LOCUS       DAJVSY010000001       102508 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.001, whole genome shotgun sequence.
ACCESSION   DAJVSY010000001 DAJVSY010000000
VERSION     DAJVSY010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 102508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 102508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..102508
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.001"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(1..610)
                     /gene="yeeE"
                     /locus_tag="OQQ19_000001"
                     /pseudo
     CDS             complement(1..610)
                     /gene="yeeE"
                     /locus_tag="OQQ19_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416517.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transport protein YeeE"
     gene            complement(789..2147)
                     /gene="plaP"
                     /locus_tag="OQQ19_000002"
     CDS             complement(789..2147)
                     /gene="plaP"
                     /locus_tag="OQQ19_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416518.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine/proton symporter PlaP"
                     /protein_id="HCS1801783.1"
                     /translation="MSHNVTPNTSRVELRKTLTLVPVVMMGLAYMQPMTLFDTFGIVS
                     GLTDGHVPTAYAFALIAILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSS
                     LLDYLFAPMINILLAKIYFEALVPSIPSWMFVVALVAFMTAFNLRSLKSVANFNTVIV
                     VLQVVLIAVILGMVVYGVFEGEGAGTLASTRPFWSGDAHVIPMITGATILCFSFTGFD
                     GISNLSEETKDAERVIPRAIFLTALIGGMIFIFATYFLQLYFPDISRFKDPDASQPEI
                     MLYVAGKAFQVGALIFSTITVLASGMAAHAGVARLMYVMGRDGVFPKSFFGYVHPKWR
                     TPAMNIILVGAIALLAINFDLVMATALINFGALVAFTFVNLSVISQFWIREKRNKTLK
                     DHFQYLFLPMCGALTVGALWVNLEESSMVLGLIWAAIGLIYLACVTKSFRNPVPQYED
                     VA"
     gene            complement(2137..2199)
                     /gene="yoeI"
                     /locus_tag="OQQ19_000003"
     CDS             complement(2137..2199)
                     /gene="yoeI"
                     /locus_tag="OQQ19_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein YoeI"
                     /protein_id="HCS1801784.1"
                     /translation="MGQFFAYATVITVKENDHVA"
     gene            complement(2414..3343)
                     /locus_tag="OQQ19_000004"
     CDS             complement(2414..3343)
                     /locus_tag="OQQ19_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416519.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1801785.1"
                     /translation="MKPLLDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESD
                     LNIQLLDRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDT
                     FPFSLLAPLIEAFYQHHSVTRLKFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFG
                     FSRLGDLEQVFAVAPHHPLALEEEPLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQE
                     AITVFDFKTKLELQISGLGCGYLPRYLAQHFLDSGALIEKKVVAQTLFEPVWIGWNEQ
                     TAGLASGWWRDEILANSAIAGVYAKSDDGKSAI"
     gene            complement(3389..4213)
                     /locus_tag="OQQ19_000005"
     CDS             complement(3389..4213)
                     /locus_tag="OQQ19_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1801786.1"
                     /translation="MKKVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSG
                     IDSYLLRMEPELVCDSDDLDALMDADALVITLPARRSGSGDEFYLQAVQELVDSALAH
                     RIPRIIFTSSTSVYGDAQGMVKETTPRNPVTNSGRVLEELEDWLHNLPGTSVDILRLA
                     GLVGPGRHPGRFFAGKTAPDGEHGVNLVHLEDVIGAITLLLQAPKGGHIYNICAPAHP
                     ARNVFYPQMARLLGLEPPQFRNSLDSGKGKIIDGSRICNELGFEYQYPDPLVMPLE"
     gene            complement(4296..4550)
                     /gene="yoeB"
                     /locus_tag="OQQ19_000006"
                     /pseudo
     CDS             complement(4296..4550)
                     /gene="yoeB"
                     /locus_tag="OQQ19_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707909.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin YoeB"
     gene            complement(4547..4798)
                     /gene="yefM"
                     /locus_tag="OQQ19_000007"
     CDS             complement(4547..4798)
                     /gene="yefM"
                     /locus_tag="OQQ19_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoeB-YefM toxin-antitoxin system antitoxin YefM"
                     /protein_id="HCS1801787.1"
                     /translation="MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEE
                     YNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKDIIE"
     gene            5081..5131
                     /gene="hisL"
                     /locus_tag="OQQ19_000008"
     CDS             5081..5131
                     /gene="hisL"
                     /locus_tag="OQQ19_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="his operon leader peptide"
                     /protein_id="HCS1801788.1"
                     /translation="MTRVQFKHHHHHHHPD"
     misc_feature    5107..5230
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            5277..6176
                     /gene="hisG"
                     /locus_tag="OQQ19_000009"
     CDS             5277..6176
                     /gene="hisG"
                     /locus_tag="OQQ19_000009"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HCS1801789.1"
                     /translation="MTDNTRLRIAMQKSGRLSDDSRELLARCGIKINLHTQRLIAMAE
                     NMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFG
                     GCRLSLATPVDEAWDGPLSLNGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVAPR
                     AGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMEESKQQLIDKLLTRIQ
                     GVIQARESKYIMMHAPTERLDEVIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWE
                     TMEKLKALGASSILVLPIEKMME"
     gene            6182..7486
                     /gene="hisD"
                     /locus_tag="OQQ19_000010"
     CDS             6182..7486
                     /gene="hisD"
                     /locus_tag="OQQ19_000010"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HCS1801790.1"
                     /translation="MSFNTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVK
                     ARGDEALREYSAKFDKTTVTALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQ
                     KLPPVDVETQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPARIAGCKKVVLC
                     SPPPIADEILYAAQLCGVQDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAK
                     RQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPAAD
                     MARRVAEAVERQLAELPRAETARQALNASRLIVTKDLAQCVEISNQYGPEHLIIQTRN
                     ARDLVDGITSAGSVFLGDWSLESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTV
                     QELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA"
     gene            7483..8553
                     /gene="hisC"
                     /locus_tag="OQQ19_000011"
     CDS             7483..8553
                     /gene="hisC"
                     /locus_tag="OQQ19_000011"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HCS1801791.1"
                     /translation="MSIVTITDLARENVRNLTPYQSARRLGGNGDVWLNANEYPTAVE
                     FQLTQQTLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDA
                     ILYCPPTYGMYGVSAETIGVECRTVPTLDNWQLDLQGISDKLEGVKVVYVCSPNNPTG
                     QLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFAL
                     AGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAER
                     ECLIAALKEIPCVEQVFDSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCL
                     RITVGTREESQRVIDALRAEQV"
     gene            8553..9620
                     /gene="hisB"
                     /locus_tag="OQQ19_000012"
     CDS             8553..9620
                     /gene="hisB"
                     /locus_tag="OQQ19_000012"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416526.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HCS1801792.1"
                     /translation="MSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPELLKLQ
                     KAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECD
                     CRKPKVKLVERYLAEQAIDRANSYVIGDRATDIQLAENMGITGLRYDRETLNWPMIGE
                     QLTKRDRYAHVVRNTKETQIDVQVWLDREGGSKINTGVGFFDHMLDQIATHGGFRMEI
                     NVKGDLYIDDHHTVEDTGLALGEALKIALGDKRGICRFGFVLPMDECLARCALDISGR
                     PHLEYKAEFTYQRVGDLSTEMIEHFFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFG
                     RTLRQAIRVEGDTLPSSKGVL"
     gene            9620..10210
                     /gene="hisH"
                     /locus_tag="OQQ19_000013"
     CDS             9620..10210
                     /gene="hisH"
                     /locus_tag="OQQ19_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HCS1801793.1"
                     /translation="MNVVILDTGCANLNSVKSAIARHGYEPKVSRDPDVVLLADKLFL
                     PGVGTAQAAMDQVRERELFDLIKACTQPVLGICLGMQLLGRRSEESNGVDLLGIIDED
                     VPKMTDFGLPLPHMGWNRVYPQAGNRLFQGIEDGAYFYFVHSYAMPVNPWTIAQCNYG
                     EPFTAAVQKDNFYGVQFHPERSGAAGAKLLKNFLEM"
     gene            10210..10947
                     /gene="hisA"
                     /locus_tag="OQQ19_000014"
     CDS             10210..10947
                     /gene="hisA"
                     /locus_tag="OQQ19_000014"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310852.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HCS1801794.1"
                     /translation="MIIPALDLIDGTVVRLHQGDYGKQRDYGNDPLPRLQDYATQGAE
                     VLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRSEEDVAALLEAGVARVVVG
                     STAVKSPEMVKGWFERFGADALVLALDVRIDEQGNKQVAVSGWQENSGVSLEQLVETY
                     LPVGLKHVLCTDISRDGTLAGSNVSLYEEVCARYPQVAFQSSGGIGDINDVAALRGTG
                     VRGVIVGRALLEGKFTVKEAIACWQNA"
     gene            10929..11705
                     /gene="hisF"
                     /locus_tag="OQQ19_000015"
     CDS             10929..11705
                     /gene="hisF"
                     /locus_tag="OQQ19_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HCS1801795.1"
                     /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYAEEGA
                     DELVFYDITASSDGRVVDKSWVSRVAEVIDIPFCVAGGIKSLEDAAKILSFGADKISI
                     NSPALADPTLITRLADRFGVQCIVVGIDTWYDAETGKYHVNQYTGDESRTRVTQWETL
                     DWVQEVQKRGAGEVVLNMMNQDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLE
                     AFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRIC"
     gene            11699..12310
                     /locus_tag="OQQ19_000016"
     CDS             11699..12310
                     /locus_tag="OQQ19_000016"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HCS1801796.1"
                     /translation="MLTEQQRRELDWEKTDGLMPVIVQHAVSGEVLMLGYMNPEALDK
                     TIESGKVAFFSRTKQRLWTKGETSGNFLNVVSIAPDCDNDTLLLLVNPIGPTCHKGTS
                     SCFGDTAHQWLFLYQLEQLLAERKSADPETSYTAKLYASGTKRIAQKVGEEGVETALA
                     ATVHDRFELTNEASDLMYHLLVLLQDQDLDLTTVIENLRKRHQ"
     gene            complement(12407..13384)
                     /gene="wzzB"
                     /locus_tag="OQQ19_000017"
     CDS             complement(12407..13384)
                     /gene="wzzB"
                     /locus_tag="OQQ19_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310855.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen chain length determinant protein
                     WzzB"
                     /protein_id="HCS1801797.1"
                     /translation="MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIAL
                     AIGYLAVAKEKWTSTAIVTQPDVGQIAGYTNAMNVIYGSAVPKVSDIQASLIGRYSTA
                     FSALAETLDNQEEAEKLTIEPTVKNQSLPLAVSYVGETPEGAQKQLAKYIQQVDDQVN
                     EELGKDLKDNIALRMKNLQDSLKTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQVQ
                     QTEDVTQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIDNLDVDKLDIHA
                     YRYVMKPTLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK"
     gene            complement(13531..13623)
                     /locus_tag="OQQ19_000018"
                     /pseudo
     CDS             complement(13531..13623)
                     /locus_tag="OQQ19_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416532.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 6-dehydrogenase"
     gene            13793..14797
                     /locus_tag="OQQ19_000019"
     CDS             13793..14797
                     /locus_tag="OQQ19_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010432020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase"
                     /protein_id="HCS1801798.1"
                     /translation="MKFLVTGAAGFIGFYLSKRLLAAGHQVVGIDNLNDYYDVNLKQA
                     RLDLLKHDNFSFYKIDLADREKMAALFADERFERVINLAAQAGVRYSLENPNAYADAN
                     LIGFLNILEGCRHNNVQHLLYASSSSVYGMNRKMPFSTDDSVDHPVSLYAATKKANEL
                     MAHTYSHLYGLPTTGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNFGKMKRDFT
                     YIDDIAEAIIRLQDVIPEKNPQWAVETGSPATSSAPYRVYNIGNSSPVELMDYINALE
                     EALGIEANKNMMPLQPGDVLETSADTKALYDVIGFKPETSVKEGVKNFVEWYRNFYKV
                     "
     gene            complement(14863..16029)
                     /gene="ugd"
                     /locus_tag="OQQ19_000020"
     CDS             complement(14863..16029)
                     /gene="ugd"
                     /locus_tag="OQQ19_000020"
                     /EC_number="1.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005227854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 6-dehydrogenase"
                     /protein_id="HCS1801799.1"
                     /translation="MKITISGTGYVGLSNGILIAQNHEVVALDIVQAKVDMLNKRQSP
                     LVDKEIEEYLATKDLNFRATTDKYDAYKNADYVIIATPTDYDPKTNYFNTSSVEAVIR
                     DVTEINPNAVMIIKSTIPVGFTESIKERFGIENVIFSPEFLREGKALYDNLHPSRIVI
                     GEQSERAKRFAALLQEGAIKQDIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYA
                     ESLGLNSRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYQSVPNNLISAI
                     VDANRTRKDFIADSILARKPKVVGVYRLIMKNGSDNFRASSIQGIMKRIKAKGVPVIV
                     YEPAMKEDDFFRSRVVRDLDAFKQEADVIISNRMSADLADVADKVYTRDLFGND"
     gene            complement(16278..17684)
                     /gene="gndA"
                     /locus_tag="OQQ19_000021"
     CDS             complement(16278..17684)
                     /gene="gndA"
                     /locus_tag="OQQ19_000021"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HCS1801800.1"
                     /translation="MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIA
                     ENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGN
                     TFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIA
                     AVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQT
                     FTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEP
                     LSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYA
                     QGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPY
                     FKQIADDYQQALRDVVAYAVQNGIPVPTFAAAVAYYDSYRAAVLPANLIQAQRDYFGA
                     HTYKRIDKEGVFHTEWLD"
     gene            complement(17812..18867)
                     /locus_tag="OQQ19_000022"
     CDS             complement(17812..18867)
                     /locus_tag="OQQ19_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020883281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1972 domain-containing protein"
                     /protein_id="HCS1801801.1"
                     /translation="MSNTAIIGTVGVPASYGGFETLVENLIETEKVNYIVYCSSKNYP
                     KKLSTYKNAKLVYIPLSANGISSVIYDAFSILHAIVFRKVNTLLILGVSGCFILPIIK
                     KISSVKIITNIDGVEWRRDKWGRFAKKFLKWSEKIAVKNSNIVISDNKEIANYVCSEY
                     MVNSQVIAYGGDHSLVFETKRCNDVENSESKYALALCRIEPENNVHVILESFSKVTKK
                     LKFIGNWGSSDYGRSLKKKYSKYNNIEIIDPIYDVEQLNIIRSGCEFYVHGHSAGGTN
                     PSLVEMMFFAKPIICFDCKYNRYTTFEQACYFRDLKDLIIKIESPKERTQGVKLKSLA
                     EKHYTWNRIREQYEQLL"
     gene            complement(18860..20152)
                     /gene="wzy"
                     /locus_tag="OQQ19_000023"
     CDS             complement(18860..20152)
                     /gene="wzy"
                     /locus_tag="OQQ19_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_060634342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O53 family O-antigen polymerase"
                     /protein_id="HCS1801802.1"
                     /translation="MLAWAPKLLLLFFLLSGLIKAISLYININLNYVFIPLLILASLF
                     YLLINRTIKMKAQGACFIFFFSISAILFLVNNIVVNNVYTQLQLMLAVTIQYIFPIII
                     ICLAGSGKLKLDIFDSLINIITKLTFLSLLIFGLCVMYDSKMVEEFYSQLYNHGLIIN
                     PFQTSEEGITLRFSGIFSSGFILASYCCFAIIYYYFNKSVNRIKFAFLFVGFVIMVVL
                     TYNRNGMLAFAVTSLFIMIHTYLRRYYLTLANLYYVFLIGILFIAPSFILYFGGDIQN
                     SYSSIDYSAFTKLSTLFSRIDAWLQVLNINDVSRLLFGSGLVQGLGEDDMNFYVDNGY
                     LYLLHQSGLIALVLYIATWSYMFISLSKNLKKRRNHNFVSVDEINICLLLILVSFTLA
                     LLNNLFFEPVFLILVLMKCVTVNNKSSSIYEKNEQTYE"
     gene            complement(20156..21250)
                     /locus_tag="OQQ19_000024"
     CDS             complement(20156..21250)
                     /locus_tag="OQQ19_000024"
                     /inference="COORDINATES: protein motif:HMM:NF025072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HCS1801803.1"
                     /translation="MKKIAILLPGPRREPVGGYKVLYQYGNYLASVGWQIDFIYLTNR
                     IVCYNRFSGLVGKIKAKLFSLLKFYKWFDFTSSNINHYVIKSLKKRDIENFNIVICSS
                     VETFIYANSSCRVNHKKLVYFVQDYENWNIPENILNYTLSHKDVDYITISDDLVKKIT
                     KMGGDVSLTLYNGINKNDFFVNIPWNERDRASFLFLYHPSERKGCDLLLRAIQKIHEV
                     DSSIKFSCFSAYTKPENFPSFIHYVYQPTVKQLNNLYNENRYFICSSIYEGFGLTAAE
                     ASFSGAIVVTTRNGGVEQFIKNEVTGFVLKERTLNSFMVAIMKLSQKDEELNLFAIES
                     SKKVRIQLDLDINFKKIDSYFKARYNNKRN"
     gene            complement(21251..22480)
                     /gene="wzx"
                     /locus_tag="OQQ19_000025"
     CDS             complement(21251..22480)
                     /gene="wzx"
                     /locus_tag="OQQ19_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_060634343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O53 family O-antigen flippase"
                     /protein_id="HCS1801804.1"
                     /translation="MVKKIVNQFIYQFGNYILPFLIIPFLINKLSIAVYKDFVVIQSL
                     VLFFAVLINYGLDLFGVRYISNNVKHLRKCKSFLYISILSRLCIFIFCSFFLLVSLMA
                     LTKPDLLYWLLCFFWMLSFVFQSNWYLQGCGDFKLITFYGLLPKLIVYPFVFILVNND
                     NDAWVYLFLCAIANYASNILMMIHIRRKLNVVAFKRTNLLRNVWIFLVKGWYIFLSQA
                     SVTLISYANIFFLPLVLEPKSFVVFSTAERIVKVLSITTTPILNVIFPHISSLIENNK
                     QRVFIMISRISLFSLIVFLLCYTLYVFIGYYLIQLIFPTISQELYSVLLLLLFNVFFV
                     FQNNLFGTQIGLNYGKDKSFTKIIAINGILNIIAMPVFSKLYHLHGTILTSLCIQLSI
                     LICMYMLAKKCGYKFKV"
     gene            complement(22461..23573)
                     /locus_tag="OQQ19_000026"
     CDS             complement(22461..23573)
                     /locus_tag="OQQ19_000026"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HCS1801805.1"
                     /translation="MKFIIIGYRDAYFWNEYGTSVRDLQIAEILSRKYHVTFINRPVS
                     IYERLKNKKKAKSEYKAYSNRITFIDHTSYDLIGPLFGRIWTKYCYKKILNRISSLFT
                     DDSIIIDFTPIAELEFKNNKRITYWYDLIDNFSIHNRFSEKEKKAVRDKYAYVDENAD
                     IITAVSDKAIKNFLNPNKYVMPNGVYLENQNHECFIDGTPNKVYQLGFVGFVTDKLDI
                     DFLNKLSKKFSIIIWGKFFDDSIRDKLNENIKIAGAFKYSDLPSIMKSFKVGLLPYLP
                     EKSHDESPLKMYEYFKYGIPCLSSMNFEIKSRWFVNYLEYSKRDLLYEKINELIVSNN
                     SESIKASIQKEWLFEIKVNKIIEDIIRRKECGKKNS"
     gene            complement(23570..24412)
                     /locus_tag="OQQ19_000027"
     CDS             complement(23570..24412)
                     /locus_tag="OQQ19_000027"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1801806.1"
                     /translation="MENTNYYKLAILIVLYGKEVEQCETFTHIDRVLKKNRMSKDDII
                     LCLWNNGPREIAFNLTTDYYTLKVCQTINNESLSYIYNLFINEVESEKYILLDHDSIL
                     KYDYVLECLNSTSDCIIPNIIVGNNIQSPKTYSIQSFNKGNTVLAIGSGICISKKLCE
                     KLRQVFGDVFDSRFYFYGVDSTFFLRLNKIGESEFIKISECVVLHSLSRLENEAIKVK
                     QFRIKERSYDQGLTLRYYFCKFTFFTVAKKLLAKLIFNKSDISLIYFAKAYFSGKHYK
                     SGKS"
     gene            complement(24399..24968)
                     /gene="rfbC"
                     /locus_tag="OQQ19_000028"
     CDS             complement(24399..24968)
                     /gene="rfbC"
                     /locus_tag="OQQ19_000028"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001100813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HCS1801807.1"
                     /translation="MNVIKTEISDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVE
                     FVQDNHSKSSKGVLRGLHYQLEPYAQGKLVRCAVGEVFDVAVDIRKSSPTFGKWVGVN
                     LSAENKRQLWIPEGLAHGFLVLSETAEFLYKTTNYYHPESDRGIIWDDPDIDVKWPLS
                     IHKPILSIKDEKQKMFKEMIALEKWNGEY"
     gene            complement(24973..25851)
                     /gene="rfbA"
                     /locus_tag="OQQ19_000029"
     CDS             complement(24973..25851)
                     /gene="rfbA"
                     /locus_tag="OQQ19_000029"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HCS1801808.1"
                     /translation="MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTL
                     MLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPTPDGLAQAFIIGEEFIGG
                     DDCALVLGDNIFYGHDLPKLMDVAVNKESGATVFAYHVNDPERYGVVEFDKNGTAISL
                     EEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSSRGELEITDINRIYMEQGRLSVAMM
                     GRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAYRKGFIAAEQVKVLAEPL
                     KKNAYGQYLLKMIKGY"
     gene            complement(25909..26808)
                     /gene="rfbD"
                     /locus_tag="OQQ19_000030"
     CDS             complement(25909..26808)
                     /gene="rfbD"
                     /locus_tag="OQQ19_000030"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HCS1801809.1"
                     /translation="MNILLFGKTGQVGWELQRALAPLGNLIALDVHSTDYCGDFSNSE
                     GVAETVKKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVIHY
                     STDYVFPGTGEIPWQEADATAPLNVYGETKLAGEKALQEHCAKHLIFRTSWVYAGKGN
                     NFAKTMLRLAKEREELAVINDQFGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAS
                     GTTTWHDYAALVFEEARKAGIPLALNKLNAVPTTAYPTPARRPHNSRLDTEKFQQNFA
                     LVLPDWQIGVKRMLNELFTTTAI"
     gene            complement(26808..27893)
                     /gene="rfbB"
                     /locus_tag="OQQ19_000031"
     CDS             complement(26808..27893)
                     /gene="rfbB"
                     /locus_tag="OQQ19_000031"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HCS1801810.1"
                     /translation="MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLA
                     DVSDSERYVFEHADICDAAVMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIV
                     GTYVLLEAARNYWSALDSDKKNSFRLHHISTDEVYGDLPHPDEVNNTEELPLFTETTA
                     YAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEG
                     KALPIYGKGDQIRDWLYVEDHARALYTVVTEGKAGETYNIGGHNEKKNIDVVLTICDL
                     LDEIVPKEKSYREQITYIADRPGHDRRYAIDAEKIGRELGWKPQETFESGIRKTVEWY
                     LSNTKWVDNVKSGAYQSWIEENYEGRQ"
     gene            complement(28266..29159)
                     /gene="galF"
                     /locus_tag="OQQ19_000032"
     CDS             complement(28266..29159)
                     /gene="galF"
                     /locus_tag="OQQ19_000032"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalF"
                     /protein_id="HCS1801811.1"
                     /translation="MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEI
                     VAAGIKEILLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNV
                     RQGEPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRS
                     QVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDIMAVGRYVLS
                     ADIWPELEHTQPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY
                     GLRNLKEGAKFRKGIEKLLSE"
     gene            complement(29334..30728)
                     /gene="wcaM"
                     /locus_tag="OQQ19_000033"
     CDS             complement(29334..30728)
                     /gene="wcaM"
                     /locus_tag="OQQ19_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis protein WcaM"
                     /protein_id="HCS1801812.1"
                     /translation="MPFKKISRRTFLTASSALAFLHTPFARALPARQSVNINDYNPHD
                     WIASFKQAFSEGQTVVVPAGFVCDNINTGIFIPPGKTLHILGSLRGNGRGRFVLQDGS
                     QVTGEEGGSMHNITLDVRGSDCTIKGLAMSGFGPVTQIYIGGKNKRVMRNLTIDNLTV
                     SHANYAILRQGFHNQIIGANITNCKFSDLQGDAIEWNVAINDSDILISDHVIERINCT
                     NGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVENGKHFVIRNIK
                     ARNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNF
                     RVNNIQLDNTHLAYKLRGIQISAGNAVSFVALTNIEMKRASLELYNKPQHLFMRNINV
                     MQESSVGPALSMNFDMRKDVRGVFMAKKETLLSLANVHAVNEKGQSSVDIDRVNHHIV
                     NVEKINFRLPERRE"
     gene            complement(30739..31959)
                     /gene="wcaL"
                     /locus_tag="OQQ19_000034"
     CDS             complement(30739..31959)
                     /gene="wcaL"
                     /locus_tag="OQQ19_000034"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaL"
                     /protein_id="HCS1801813.1"
                     /translation="MKVGFFLLKFPLSSETFVLNQITAFIDMGFEVEIVALQKGDTQN
                     THAAWTKYNLAARTSWLQDEPTGKVAKLRHRASQTLRGIHRKNTWQALNLKRYGAESR
                     NLILSAICGQVATPFRADVFIAHFGPAGVTAAKLRELGVIRGKIATIFHGIDISSREV
                     LNHYTPEYQQLFRRGDLMLPISDLWAGRLQKMGCPREKIAVSRMGVDMTRFSPRPVKA
                     PATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQ
                     LEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVST
                     LHSGIPELVEADKSGWLVPENDARALAQRLAAFSQLNTDELAPVVKRAREKVEHDFNQ
                     QVINRELASLLQAL"
     gene            complement(31956..33236)
                     /gene="wcaK"
                     /locus_tag="OQQ19_000035"
     CDS             complement(31956..33236)
                     /gene="wcaK"
                     /locus_tag="OQQ19_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis pyruvyl transferase
                     WcaK"
                     /protein_id="HCS1801814.1"
                     /translation="MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPV
                     SSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVLRRRYQHQVLLSRVTDTGKLRNI
                     AIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCTFMAKKPLFMIGHSVGP
                     FQDEQFNQLANYVFGHCDALILRESVSLDLMKRSNITTAKVEHGVDTAWLVDHHTEDF
                     TASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRILDEGYQV
                     IALSTCTGIDSYNKDDRMVALNLRQHISDPARYHVVMDELNDLEMGKILGACELTVGT
                     RLHSAIISMNFATPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQ
                     LPALNARLSEAVSRERQTGMQMVQSVLERIGEVK"
     gene            complement(33608..35086)
                     /gene="wzxC"
                     /locus_tag="OQQ19_000036"
     CDS             complement(33608..35086)
                     /gene="wzxC"
                     /locus_tag="OQQ19_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid undecaprenyl disphosphate flippase
                     WzxC"
                     /protein_id="HCS1801815.1"
                     /translation="MSLREKTISGAKWSAIATVIIIGLGLVQMTVLARIIDNHQFGLL
                     TVSLVIIALADTLSDFGIANSIIQRKEISHLELTTLYWLNVGLGLVVCVAVFLLSDLI
                     GDVLNNPDLAPLIKTLSLAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTV
                     VSAHFWPLAMIAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLVSVAPNLRFGAWLTA
                     DSIINYLNTNLSTLVLARILGAGVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQ
                     DDTEKLRVNFYKLLSVVGIINFPALLGLMVVSNNFVPLVFGEKWNSIIPVLQLLCIVG
                     LLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIVIGGQMAGAIGVTLGFLLVQI
                     INTILSYFVMIKPVLGSSYRQYILSLWLPFYLSLPTLVVSYVLGIVLKGQLALGMLLG
                     VQIAAGVLAFVVMIVLSRHPLVVEVKRQFCRSEKMKMLLRAG"
     gene            complement(35088..36467)
                     /gene="wcaJ"
                     /locus_tag="OQQ19_000037"
     CDS             complement(35088..36467)
                     /gene="wcaJ"
                     /locus_tag="OQQ19_000037"
                     /EC_number="2.7.8.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-phosphate glucose
                     phosphotransferase"
                     /protein_id="HCS1801816.1"
                     /translation="MTNLKKRERAKTNASLISMVQRFSDITIMFAGLWLVCEVSGLSF
                     LYMHLLVALITLVVFQMLGGITDFYRSWRGVRAATEFALLLQNWTLSVIFSAGLVAFN
                     NDFDTQLKIWLTSIGLVVCRSCIRIGAGWLRNHGYNKRMVAVAGDLAAGQMLMESFRN
                     QPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMQMCDGARVKKL
                     VHQLADTTCSVLLIPDVFTFNILHSRLEEMNGVPVVPLYDTPLSGVNRLLKRAEDIVL
                     ATLILLLISPVLCCIALAVKLSSPGPVIFRQTRYGMDGKPIKVWKFRSMKVMENDKVV
                     TQATQNDPRVTKVGNFLRRTSLDELPQFINVLTGGMSIVGPRPHAVAHNEQYRQLIEG
                     YMLRHKVKPGITGWAQINGWRGETDTLEKMEKRVEFDLEYIREWSVWFDIKIVFLTVF
                     KGFVNKAAY"
     gene            complement(36522..37892)
                     /gene="cpsG"
                     /locus_tag="OQQ19_000038"
                     /gene_synonym="manB"
     CDS             complement(36522..37892)
                     /gene="cpsG"
                     /locus_tag="OQQ19_000038"
                     /gene_synonym="manB"
                     /EC_number="5.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis phosphomannomutase
                     CpsG"
                     /protein_id="HCS1801817.1"
                     /translation="MKKLTCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIVLG
                     GDVRLTSETLKLALAKGLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPM
                     DYNGMKLVREGARPISGDTGLRDVQRLAEANDFPPVDETKRGRYQQINLRDAYVDHLF
                     GYINVKNLTPLKLVINSGNGAAGPVVDAIEARFKTLGAPVELIKVHNTPDGNFPNGIP
                     NPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLE
                     KNPGAKIIHDPRLSWNTIDVVTAAGGTPVMSKTGHAFIKERMRKEDAIYGGEMSAHHY
                     FRDFAYCDSGMIPWLLVAELLCLKGKTLGELVRDRMAAFPASGEINSKLAQPVEAINR
                     VEQHFSREALAVDRTDGISMTFADWRFNLRTSNTEPVVRLNVESRGDVPLMEARTRTL
                     LTLLNE"
     gene            complement(38085..39521)
                     /gene="cpsB"
                     /locus_tag="OQQ19_000039"
     CDS             complement(38085..39521)
                     /gene="cpsB"
                     /locus_tag="OQQ19_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate guanyltransferase"
                     /protein_id="HCS1801818.1"
                     /translation="MAQSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTT
                     ICRLKGVECESPVVICNEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAALAA
                     TRHSPESDPLMLVLAADHVIADEDAFRAAVRNAIPYAEAGKLVTFGIVPDLPEIGYGY
                     IRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELK
                     KYRPDILDACEKAMSAVDPDLDFIRVDEEAFLPCPEESVDYAVMERTADAVVVPMDAG
                     WSDVGSWSSLWEISAHTAEGNVCHGDVINHKTENSYVYAESGLVTTVGVKDLVVVQTK
                     DAVLIADRNAVQDVKKVVEQIKADGRHEHRVHREVYRPWGKYDSIDAGDRYQVKRITV
                     KPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPGKI
                     PLDLIEVRSGSYLEEDDVVRFADRYGRV"
     gene            complement(39524..40747)
                     /gene="wcaI"
                     /locus_tag="OQQ19_000040"
     CDS             complement(39524..40747)
                     /gene="wcaI"
                     /locus_tag="OQQ19_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis fucosyltransferase
                     WcaI"
                     /protein_id="HCS1801819.1"
                     /translation="MKILVYGINYSPELTGIGKYTGEMVEWLAAQGHEVRVITAPPYY
                     PQWQVGENYSAWRYKREEGAATVWRCPLYVPKQPSTLKRLLHLGSFAVSSFFPLMAQR
                     RWKPDRIIGVVPTLFCTPGMRLLAKLSGARTVLHIQDYEVDAMLGLGLAGKGKGGKVA
                     QLATAFERSGLHNVDNVSTISRSMMNKAIEKGVAAENVIFFPNWSEIARFQHVADVDV
                     DALRNQLGLPDNKKIILYSGNIGEKQGLENVIEAADRLRDEPLIFAIVGQGGGKARLE
                     KMAQQRGLRNMQFFPLQSYDALPALLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGN
                     AVITAEAHTELGQLCETFPGIAVCVEPESVEALVAGIRQALLLPKHNTVAREYAERTL
                     DKENVLRQFINDIRG"
     gene            complement(40744..41223)
                     /gene="gmm"
                     /locus_tag="OQQ19_000041"
                     /gene_synonym="nudD"
                     /gene_synonym="wcaH"
                     /gene_synonym="yefC"
     CDS             complement(40744..41223)
                     /gene="gmm"
                     /locus_tag="OQQ19_000041"
                     /gene_synonym="nudD"
                     /gene_synonym="wcaH"
                     /gene_synonym="yefC"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707946.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose mannosyl hydrolase"
                     /protein_id="HCS1801820.1"
                     /translation="MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGY
                     WFVPGGRVQKDEMLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHY
                     VVLGFRFRVAEEDLLLPDEQHDDYRWLTPDALLASNDVHANSRAYFLAEKRAGVPGL"
     gene            complement(41226..42191)
                     /gene="fcl"
                     /locus_tag="OQQ19_000042"
                     /gene_synonym="wcaG"
                     /gene_synonym="yefB"
     CDS             complement(41226..42191)
                     /gene="fcl"
                     /locus_tag="OQQ19_000042"
                     /gene_synonym="wcaG"
                     /gene_synonym="yefB"
                     /EC_number="1.1.1.271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HCS1801821.1"
                     /translation="MSKQRIFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDS
                     RAVHDFFASESIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKL
                     LFLGSSCIYPKLAKQPMAGSELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRS
                     VMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMA
                     AASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASK
                     PDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLENQDRFRG"
     gene            complement(42194..43315)
                     /gene="gmd"
                     /locus_tag="OQQ19_000043"
     CDS             complement(42194..43315)
                     /gene="gmd"
                     /locus_tag="OQQ19_000043"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HCS1801822.1"
                     /translation="MSKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERV
                     DHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYT
                     ADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVA
                     KLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL
                     GNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRF
                     EGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWK
                     PEITLREMVSEMVANDLEAAKKHSLLKSHGYDVAIALES"
     gene            complement(43341..43889)
                     /gene="wcaF"
                     /locus_tag="OQQ19_000044"
     CDS             complement(43341..43889)
                     /gene="wcaF"
                     /locus_tag="OQQ19_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis acetyltransferase
                     WcaF"
                     /protein_id="HCS1801823.1"
                     /translation="MQDLSGFSVPKGFRGGNAIKVQLWWAVQATIFAWSPQVLYRWRA
                     FLLRLFGAKIGKNVVIRPSVKITYPWKLTLGDYAWVGDDVNLYTLGEITIGAHSVISQ
                     KSYLCTGSHDHASQHFTINATPIVIGEKCWLATDVFVAPGVTIGDGTVVGARSSVFKS
                     LPANVVCRGNPAVVIRERVETE"
     gene            complement(43905..44651)
                     /gene="wcaE"
                     /locus_tag="OQQ19_000045"
     CDS             complement(43905..44651)
                     /gene="wcaE"
                     /locus_tag="OQQ19_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaE"
                     /protein_id="HCS1801824.1"
                     /translation="MLLSIITVAFRNLEGIVKTHASLAHLAQVEDISFEWIVVDGGSN
                     DGTREYLENLNGIFNLRFVSEPDNGIYDAMNKGIAMAQGKFALFLNSGDIFHQNAANF
                     VRKLKMQKDNVMITGDALLDFGDGHKIKRSAKPGWYIYHSLPASHQAIFFPVSGLKKW
                     RYDLEYKVSSDYALAAKMYKAGYAFKKLNGLVSEFSMGGVSTTNNMELCADAKKVQRQ
                     ILHVPGFWAELSWHLRQRTTSKTKALYNKV"
     gene            complement(44662..45879)
                     /gene="wcaD"
                     /locus_tag="OQQ19_000046"
     CDS             complement(44662..45879)
                     /gene="wcaD"
                     /locus_tag="OQQ19_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative colanic acid polymerase WcaD"
                     /protein_id="HCS1801825.1"
                     /translation="MSTSIRICSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPVLLL
                     LFLERISVKKLMIALGIGAGLTAFNYLFGQSLDASKYVTSTMLFVYIVIIIGMVWSIR
                     FKTISPHNHRKILRFFYLVVGLVVALAAVEMAQIILTGGSSIMESISKYLIYSNSYVL
                     NFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGV
                     MTFILFYLLEWAFQYLNKEAIKKKLPLALISLAVFLVGVVIAFPYISTRLGDLGTEGS
                     SSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADVGKTIDNGLYLLIIY
                     FSWFAVFLSLWYMGKVIKMMINAFGDNHNFRVQLYLFTPVSLFFTGSIFSPEYAFLIV
                     CPFILRKALNITR"
     gene            complement(45854..47071)
                     /gene="wcaC"
                     /locus_tag="OQQ19_000047"
     CDS             complement(45854..47071)
                     /gene="wcaC"
                     /locus_tag="OQQ19_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaC"
                     /protein_id="HCS1801826.1"
                     /translation="MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGK
                     ESVSHQNYPQVIKHTPRMTAMANIVLFRLFNRDLFGNFNELYRTITRTPGPVVLHFHV
                     LHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP
                     TLNNYPPVKIDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIIN
                     NGIDMATEAILADLPPVRETQGKPKIAVVAHDLRYDGKTNQQLVREMMALGDKIELHT
                     FGKFSPFTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVI
                     ATHSDAAREVLQKSGGKTVSEEEVLQLVQLSKPEIAQAIFGTTLAEFSQRSRAAYSGQ
                     QMLEEYVNFYQNL"
     gene            complement(47068..47556)
                     /gene="wcaB"
                     /locus_tag="OQQ19_000048"
     CDS             complement(47068..47556)
                     /gene="wcaB"
                     /locus_tag="OQQ19_000048"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis acetyltransferase
                     WcaB"
                     /protein_id="HCS1801827.1"
                     /translation="MLEDLRANSWSLRPCCMVLAYRVAHFCSVWRKKNVLNNIWAAPL
                     LVLYRIITECFFGYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRG
                     ADNMACPHIGNGVELGANVIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARVKV
                     IK"
     gene            complement(47559..48398)
                     /gene="wcaA"
                     /locus_tag="OQQ19_000049"
     CDS             complement(47559..48398)
                     /gene="wcaA"
                     /locus_tag="OQQ19_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaA"
                     /protein_id="HCS1801828.1"
                     /translation="MKDNPLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCS
                     TSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQGEYITGIDDDDEWTPNR
                     LSVFLAHKQQLVTHAFLYANDYVCQGEVYSQPASLPLYPKSPYSRRLFYKRNIIGNQV
                     FTWAWRFKECLFDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHINHGEMQITSSP
                     KKFSGYFHFYRKHKDKFDRASKKYQLFTLYQIRNKRMTWRTLLTLLSVRNGKRLADGI
                     RGR"
     gene            complement(48576..50738)
                     /gene="wzc"
                     /locus_tag="OQQ19_000050"
                     /pseudo
     CDS             complement(48576..50738)
                     /gene="wzc"
                     /locus_tag="OQQ19_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416564.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein kinase Wzc"
     gene            complement(50741..51184)
                     /gene="wzb"
                     /locus_tag="OQQ19_000051"
     CDS             complement(50741..51184)
                     /gene="wzb"
                     /locus_tag="OQQ19_000051"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase Wzb"
                     /protein_id="HCS1801829.1"
                     /translation="MFNNILVVCVGNICRSPTAERLLQRYHPELKVESAGLGALVGKG
                     ADPTAISVAAEHQLSLEGHCARQISRRLCRNYDLILTMEKRHIERLCEMAPEMRGKVM
                     LFGHWDNECEIPDPYRKSWETFAAVYTLLERSARQWAQALNAEQV"
     gene            complement(51190..52329)
                     /gene="wza"
                     /locus_tag="OQQ19_000052"
     CDS             complement(51190..52329)
                     /gene="wza"
                     /locus_tag="OQQ19_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein Wza"
                     /protein_id="HCS1801830.1"
                     /translation="MMKSKMKLMPLLVSVTLISGCTVLPGSNMSTMGKDVIKQQDADF
                     DLDKMVNVYPLTPRLIDQLRPRPNVARPNMTLESEIANYQYRVGPGDVLNVTVWDHPE
                     LTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGKTLAEIRSDITGRLATYIADPQ
                     VDVNIAAFRSQKTYISGQVNKSGQQAITNVPLTILDAINAAGGLTDTADWRNVVLTHN
                     GREERISLQVLMQNGDLNQNRLLYPGDILYVPRNDDLKVFVMGEVKKQSTLKMDFSGM
                     TLTEALGNAEGIDMTTSNASGIFVIRPLKGEGGRNGKIANIYQLDMSDATSLVMATEF
                     RLQPYDVVYVTTAPVSRWNRLINQLLPTISGVRYMTDTASDIHNW"
     gene            52638..52787
                     /locus_tag="OQQ19_000053"
     CDS             52638..52787
                     /locus_tag="OQQ19_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1801831.1"
                     /translation="MVIEYWLSNNAGGSVTANGIAGKVTIRQLAIFKNYIKCHSIWFL
                     GVSLG"
     gene            52988..54571
                     /locus_tag="OQQ19_000054"
     CDS             52988..54571
                     /locus_tag="OQQ19_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310895.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HCS1801832.1"
                     /translation="MEWIADPSIWAGLITLIVIELVLGIDNLVFIAILAEKLPPKQRD
                     RARVTGLLLAMLMRLLLLASISWLVTLTQPLFSFRSFTFSARDLIMLFGGFFLLFKAT
                     MELNERLEGKDSNNPTQRKGAKFWGVVTQIVVLDAIFSLDSVITAVGMVDHLLVMMAA
                     VVIAISLMLMASKPLTQFVNSHPTIVILCLSFLLMIGFSLVAEGFGFVIPKGYLYAAI
                     GFSVMIEALNQLAIFNRRRFLSANQTLRQRTTEAVMRLLSGQKEDAELDAETASMLVD
                     HGNQQIFNPQERRMIERVLNLNQRTVSSIMTSRHDIEHIDLNAPEDEIRQLLERNQHT
                     RLVVTDGDDAEDLLGVVHVIDLLQQSLRGEPLNLRVLIRQPLVFPETLPLLPALEQFR
                     NARTHFAFVVDEFGSVEGIVTLSDVTETIAGNLPNEVEEIDARHDIQKNADGSWTANG
                     HMPLEDLVQYVPLPLDEKREYHTIAGLLMEYLQRIPKPGEEVQVGDYLLKTLQVESHR
                     VQKVQIIPLHKDGELEYEV"
     gene            complement(54845..56698)
                     /gene="asmA"
                     /locus_tag="OQQ19_000055"
     CDS             complement(54845..56698)
                     /gene="asmA"
                     /locus_tag="OQQ19_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane assembly protein AsmA"
                     /protein_id="HCS1801833.1"
                     /translation="MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRNYMVKQVAARSG
                     YQLQLDGPLRWHVWPQLSILSGRMSLTAQGASQPLVRADNMRLDVALLPLLSHQLSVK
                     QVMLKGAVIQLTPQTEVVRSEDAPVAPRDNTLPDLSDDRGWSFDISSLKVADSVLVFQ
                     HEDDEQVTIRNIRLQMEQDPQHRGSFEFSGRVNRDQRDLTISLNGTVDASDYPHDLTA
                     AIEQINWQLQGADLPKQGIHGQGSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTL
                     TEKPEWQLRLQFPQLNLDNLIPLNETANGENGAAQQGQSQSTLPRPVISSRIDEPAYQ
                     GLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGGQVSLPGTLD
                     ATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQG
                     QAHVEMTDTRMEGMNFQQMIQQAVERNGGDVKAAENFDNVTRLDRFTTDLTLKDGVVT
                     LNDMQGQSPVLALSGAGTLNLAEQTCDTQFDIRVVGGWNGESKLIDFLKETPVPLRVY
                     GNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAERNKDSRNGKDVKKLLEKM"
     gene            complement(56720..57301)
                     /gene="dcd"
                     /locus_tag="OQQ19_000056"
     CDS             complement(56720..57301)
                     /gene="dcd"
                     /locus_tag="OQQ19_000056"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004942378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HCS1801834.1"
                     /translation="MRLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTF
                     RGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPAD
                     LVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSF
                     EPLSGPAARPYNRREDAKYRNQQGAVASRIDKD"
     gene            complement(57393..58034)
                     /gene="udk"
                     /locus_tag="OQQ19_000057"
     CDS             complement(57393..58034)
                     /gene="udk"
                     /locus_tag="OQQ19_000057"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002211872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HCS1801835.1"
                     /translation="MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVI
                     PEDCYYKDQSHLSMEERVKTNYDHPSAMDHNLLLEHLQALKRGSAIDLPVYSYVEHTR
                     MKETVTVEPKKVIILEGILLLTDARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRS
                     MDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE"
     gene            58352..61649
                     /locus_tag="OQQ19_000058"
                     /pseudo
     CDS             58352..61649
                     /locus_tag="OQQ19_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416571.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
     gene            complement(61688..62545)
                     /gene="alkA"
                     /locus_tag="OQQ19_000059"
     CDS             complement(61688..62545)
                     /gene="alkA"
                     /locus_tag="OQQ19_000059"
                     /EC_number="3.2.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000288352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase 2"
                     /protein_id="HCS1801836.1"
                     /translation="MYTLNWQPPYDWSWMLGFLAARAVSGVETVADDYYARSLAVGEY
                     RGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAAR
                     PGLRLPGCIDAFEQGVRAILGQLVSVAMAAKLTAKVVQLYGERLDDFPEYICFPTPQR
                     LAAADPQALKALGMPLKRAEALIHLANAALEGSLPMTIPGDVEQAMKTLQTFPGIGRW
                     TANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEG
                     WQPDGTDEL"
     gene            62679..64031
                     /gene="yegD"
                     /locus_tag="OQQ19_000060"
     CDS             62679..64031
                     /gene="yegD"
                     /locus_tag="OQQ19_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HCS1801837.1"
                     /translation="MFIGFDYGTANCSVAVMRDGKPHLLKMENDSTLLPSMLCAPTRE
                     AVSEWLYRHHDVPADDDETQALLRRAIRYNREEDIDVTAKSVQFGLSSLAQYIDDPEE
                     VWFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIRQQAQAQLPEAITQAVIGRPINF
                     QGLGGDEANAQAQGILERAAKRAGFRDVVFQYEPVAAGLDYEATLQEEKRVLVVDIGG
                     GTTDCSLLLMGPQWRSRLDREASLLGHSGCRIGGNDLDIALAFKNLMPLLGMGGETEK
                     GIALPILPWWNAVAINDVPAQSDFYSSANGRLLNDLVRDAREPEKVALLQKVWRQRLS
                     YRLVRSAEESKIALSNAAETRASLPFISDELATLISQQGLESALSQPLARILEQVQLA
                     LDNAQEKPDVIYLTGGSARSPLIKKALAEQLPGIPIAGGDDFGSVTAGLARWAEVVFR
                     "
     gene            complement(64043..65965)
                     /gene="yegI"
                     /locus_tag="OQQ19_000061"
     CDS             complement(64043..65965)
                     /gene="yegI"
                     /locus_tag="OQQ19_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310906.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase YegI"
                     /protein_id="HCS1801838.1"
                     /translation="MKPTLYTATGECVTPGRELGKGGEGAVYDIEEFVDSVAKIYHTP
                     PPASKQDKLAFMAATADAQLLNYVAWPQATLHGGRGGKVIGFMMPKVSGKEPIHMIYS
                     PAHRRQSYPHCAWDFLLYVARNIASSFATVHEHGHVVGDVNQNSFMVGRDSKVVLIDS
                     DSFQINVNGTLHLCEVGVSHFTPPELQTLSSFVGFERTENHDNFGLALLIFHVLFGGR
                     HPYSGVPLISDAGNALETDITHFRYAYASDNQRRGLKPPPRSIPLSMLPSDVEAMFQQ
                     AFTESGVATGRPTAKAWVAALDSLRQQLKKCPVSAMHVYPAHLTDCPWCTLDNQGVIY
                     FVDLGEEVITTSGDFVLAKVWAMVMASVAPPALQLPLPDHFQPTGRPLPLGLLRREYI
                     ILIEIALSALSLLLCGLQAEPRYIILVPVLSAIWIIGSLTSKAYKAEIQQRREAFNRA
                     KMDYEHLVSQIQQLGGLEGFIAKRAMLEKMKDEILGLPEEEKRALAALYDTARERQKQ
                     KFLEGFFASIPGVGPARKAALRSFGIETAADVTRRGVKQVKGFGDHLTQAVIDWKASC
                     DRRFVFRPNEAVTPADRQAVMAAKRHRLESALTVGATELQRFRLYAPARTMPLMEPLR
                     QAAEKLAQAQADLSRC"
     gene            complement(65962..66723)
                     /gene="pphC"
                     /locus_tag="OQQ19_000062"
     CDS             complement(65962..66723)
                     /gene="pphC"
                     /locus_tag="OQQ19_000062"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-serine/threonine phosphatase PphC"
                     /protein_id="HCS1801839.1"
                     /translation="MSWRLVYASAVGTSHISADLPCQDACQMQVVWLNDQQPLLVMFL
                     ADGAGSVSQGGEGATLAVNEAMAFMVQKVQDGELGLNDVLATNMVLTIRQRLFAEAEA
                     KALAVRDFACTFLGLISSPDGTLIMQIGDGGVVVDLGHGLQLPLTPMVGEYANMTHFI
                     TDEDAVSRLETFTSTGRAHKVAAFTDGIQRLALNMLDNSPHVPFFTPFFNGLASVTQE
                     QLDLLPELLKQFLSSPAVNERTDDDKTLALALWLP"
     gene            complement(66720..67379)
                     /locus_tag="OQQ19_000063"
     CDS             complement(66720..67379)
                     /locus_tag="OQQ19_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HCS1801840.1"
                     /translation="MSEQITFATSDFASNPEPRCPCILLLDVSGSMSGRPINELNAGL
                     VTFRDELLADPLALKRVELGIVTFGPVHVEQPFTSAANFFPPILFAQGDTPMGAAITK
                     ALDMVEERKREYRANGISYYRPWIFLITDGAPTDEWQAAANKVFQGEEDKKFAFFSIG
                     VQGADMKTLAQISVRQPLPLQGLQFRELFSWLSSSLRSVSRSTPGTEVVLEAPKGWTS
                     V"
     gene            complement(67600..67659)
                     /gene="ibsA"
                     /locus_tag="OQQ19_000064"
     CDS             complement(67600..67659)
                     /gene="ibsA"
                     /locus_tag="OQQ19_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsA"
                     /protein_id="HCS1801841.1"
                     /translation="MMKHVIILVILLVISFQAY"
     gene            complement(67932..67988)
                     /locus_tag="OQQ19_000065"
     CDS             complement(67932..67988)
                     /locus_tag="OQQ19_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS1801842.1"
                     /translation="MMKLLIIVVLLVISFPAY"
     gene            complement(68260..68316)
                     /locus_tag="OQQ19_000066"
     CDS             complement(68260..68316)
                     /locus_tag="OQQ19_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS1801843.1"
                     /translation="MMKLLIIVVLLVISWPAY"
     gene            68595..69842
                     /gene="mdtA"
                     /locus_tag="OQQ19_000067"
     CDS             68595..69842
                     /gene="mdtA"
                     /locus_tag="OQQ19_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416578.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter subunit MdtA"
                     /protein_id="HCS1801844.1"
                     /translation="MKGSYKSRWVIVIVVVIAAIAAFWFWQGRNDSRSAAPGATKQAQ
                     QSPAGGRRGMRSGPLAPVQAATAVEQAVPRYLTGLGTIIAANTVTVRSRVDGQLMALH
                     FQEGQQVKAGDLLAEIDPSQFKVALAQTQGQLAKDKATLANARRDLARYQQLAKTNLV
                     SRQELDAQQALVSETEGTIKADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQIS
                     SGDTTGIVVITQTHPIDLVFTLPESDIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTL
                     LSLDNQIDATTGMIKVKARFNNQNDVLFPNQFVNARMLVDTEQNAVVIPTAALQMGNE
                     GHFVWVLNSENKVSKHLVTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVVE
                     AQSATTPEEKATSREYAKKGARS"
     gene            69842..72964
                     /gene="mdtB"
                     /locus_tag="OQQ19_000068"
     CDS             69842..72964
                     /gene="mdtB"
                     /locus_tag="OQQ19_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MdtB"
                     /protein_id="HCS1801845.1"
                     /translation="MQVLPPSSTGGPSRLFIMRPVATTLLMVAILLAGIIGYRALPVS
                     ALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITL
                     QFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPPVYSKVNPADPPIMTLAVTSTAMPM
                     TQVEDMVETRVAQKISQISGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT
                     GANVNSAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAE
                     NSWLGAWANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTT
                     NIRASVDDTQFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFS
                     INNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLIFS
                     LIAVLIPLLFMGDIVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQN
                     RFSRASEKMFDRIIAAYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQD
                     NGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQ
                     INLKPLDERDDRVQKVIARLQTAVDKVPGVDLFLQPTQDLTIDTQVSRTQYQFTLQAT
                     SLDALSTWVPQLMEKLQQLPQLSDVSSDWQDKGLVAYVNVDRDSASRLGISMADVDNA
                     LYSAFGQRLISTIYTQANQYRVVLEHNTEITPGLAALDTIRLTSSDGGVVPLSSIAKV
                     EQRFAPLSINHLDQFPVTTISFNVPDNYSLGDAVQAIMDTEKTLNLPVDITTQFQGST
                     LAFQSALGSTVWLIVAAVVAMYIVLGILYESFIHPITILSTLPTAGVGALLALMIAGS
                     ELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPILMTT
                     LAALLGALPLMLSTGVGAELRRPLGIGMVGGLIVSQVLTLFTTPVIYLLFDRLALWTK
                     SRFARHEEEA"
     gene            72965..76042
                     /gene="mdtC"
                     /locus_tag="OQQ19_000069"
     CDS             72965..76042
                     /gene="mdtC"
                     /locus_tag="OQQ19_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MdtC"
                     /protein_id="HCS1801846.1"
                     /translation="MKFFALFIYRPVATILLSVAITLCGILGFRMLPVAPLPQVDFPV
                     IMVSASLPGASPETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDIN
                     GAARDVQAAINAAQSLLPSGMPSRPTYRKANPSDAPIMILTLTSDTYSQGKLYDFAST
                     QLAPTISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQG
                     ALEDGTHRWQIQTNDELKTAAEYQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGMTN
                     AKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV
                     EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMAL
                     TIATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLL
                     LMGGLPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRML
                     VALQQGYGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQA
                     DQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFTGGSRVNSGMMFITLKPRDERSETAQ
                     QIIDRLRVKLAKEPGANLFLMAVQDIRVGGRQSNASYQYTLLSDDLAALREWEPKIRK
                     KLATLPELADVNSDQQDNGAEMNLVYDRDTMARLGIDVQAANSLLNNAFGQRQISTIY
                     QPMNQYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGL
                     SAASTISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILI
                     IAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLI
                     GIVKKNAIMMVDFALEAQRHGNLTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSG
                     GDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSRKPKQTVTE"
     gene            76043..77459
                     /locus_tag="OQQ19_000070"
                     /pseudo
     CDS             76043..77459
                     /locus_tag="OQQ19_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416581.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            77456..78859
                     /gene="baeS"
                     /locus_tag="OQQ19_000071"
     CDS             77456..78859
                     /gene="baeS"
                     /locus_tag="OQQ19_000071"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     BaeS"
                     /protein_id="HCS1801847.1"
                     /translation="MKFWRPGITGKLFLAIFATCIVLLISMHWAVRISFERGFIDYIK
                     HGNEQRLQLLSDALGEQYAQHGNWRFLRNNDRFVFQILRSFEHDNSEDKPGPGMPPHG
                     WRTQFWVVDQNNKVLVGPRAPIPPDGTRRPILVNGAEVGAVIASPVERLTRNTDINFD
                     KQQRQTSWLIVALATLLAALATFLLARGLLAPVKRLVDGTHKLAAGDFTTRVTPTSED
                     ELGKLAQDFNQLASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAIQDGVRKFTPE
                     TVASLQAEVGTLTKLVDDLHQLSMSDEGALAYQKAPVDLIPLLEVAGGAFRERFASRG
                     LKLQFSLPDSITVFGDRDRLMQLFNNLLENSLRYTDSGGSLKISAEQHDKTVRLTFAD
                     SAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGG
                     VSITVELPLERDLQREV"
     gene            78856..79578
                     /gene="baeR"
                     /locus_tag="OQQ19_000072"
     CDS             78856..79578
                     /gene="baeR"
                     /locus_tag="OQQ19_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BaeR"
                     /protein_id="HCS1801848.1"
                     /translation="MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGD
                     QVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEI
                     GADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLD
                     LTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAE
                     QSFIRAVYGVGYRWEADACRIV"
     gene            79769..80101
                     /locus_tag="OQQ19_000073"
     CDS             79769..80101
                     /locus_tag="OQQ19_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310915.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YegP family protein"
                     /protein_id="HCS1801849.1"
                     /translation="MAGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKASAEKGIA
                     SVRSNSPQEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGT
                     SQTVKDNT"
     gene            80224..81624
                     /locus_tag="OQQ19_000074"
     CDS             80224..81624
                     /locus_tag="OQQ19_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000911981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HCS1801850.1"
                     /translation="MLKGLRTLFSRRVLFNVEMNNSVDCELLLIQQQLQALIAEPGNY
                     LAHDCDLNDTLVLCQLTHHHNGYIREKAVQYLGHKEDVAAIEELLLAANDWVKEVRLA
                     ATIALRHLMKDKNAAAFAVNLPMIRNLLQCQRYDHRAFVDEILRYLLTENNRPQLTYW
                     LTCPDKKLSRAVLQTLIEYGYFNDESSLLSILDKPDEGLRMLATTHWLRQQLPLSEAV
                     LTRLLKDRWPRIRQATLFSLTDRAIEMPPALHSTLLLDNNMLIRLRAKNMLHEVMDVP
                     QFWRHVVTSAEYTPSQRRAALYGLDSIHDPNILKLAEWGLSQNVFPLRLAAMHILAKA
                     NPRCGVKETILTTLANPDAAGLRFMVNICVWCRVPLTFEEIRQLQENAPSVKHACAYC
                     RLYHNLNKWDGLILLLQSQHKLTEEFAGKQLAIWQRNFNLSGIQPNALQRQQLQALFT
                     RNPELHNRLWGYIPFK"
     gene            81945..83306
                     /gene="yegQ"
                     /locus_tag="OQQ19_000075"
     CDS             81945..83306
                     /gene="yegQ"
                     /locus_tag="OQQ19_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HCS1801851.1"
                     /translation="MFKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFN
                     HENLQLGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLKPVVEMGPDALIMSDPGLIM
                     LVREYFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIRNQVPDME
                     IEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYNVQEGKEDDVGNIVHKY
                     EPIPVQNVEPTLGIGAPTDKVFMIEEAQRPGEYMTAFEDEHGTYIMNSKDLRAIAHVE
                     RLTKMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDTSLLETLEGLAHRGY
                     TEGFLRRHTHDDYQNYEYGYSVSDRQQFVGEFTGERKGDLAAVAVKNKFSVGDSLELM
                     TPQGNINFTLEHMENAKGVAMPVAPGDGYTVWLPVPQDLELNYALLMRNFSGETTRNP
                     HGK"
     gene            complement(83636..83953)
                     /locus_tag="OQQ19_000076"
     CDS             complement(83636..83953)
                     /locus_tag="OQQ19_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416589.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1801852.1"
                     /translation="MKKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDN
                     QYYTEAEASLARSRISGAENIVKNDATHFCVTQGKKMQIVELKTEGVGLHGVARLTFK
                     CGE"
     gene            84367..85265
                     /gene="yegS"
                     /locus_tag="OQQ19_000077"
                     /pseudo
     CDS             84367..85265
                     /gene="yegS"
                     /locus_tag="OQQ19_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310919.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipid kinase YegS"
     gene            complement(85347..86120)
                     /locus_tag="OQQ19_000078"
     CDS             complement(85347..86120)
                     /locus_tag="OQQ19_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020238881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1801853.1"
                     /translation="MNSFERRNKIIQLVNEQGTVLVQDLAGVFAASEATIRADLRFLE
                     QKGVVTRFHGGAAKIMSGNSETETQEVGFKERFQLASAPKNRIAQAAVKMIHEGMTVI
                     LDSGSTTMLIAEGLMTAKNITVITNSLPAAFALSENKDITLVVCGGTVRHKTRSMHGS
                     IAERSLQDINADLMFVGADGIDAVNGITTFNEGYSVSGAMVTAANKVIAVLDSSKFNR
                     RGFNQVLPIEKIDIIITDDAVSEVDKLALQKTRVKLITV"
     gene            complement(86226..87266)
                     /gene="gatD"
                     /locus_tag="OQQ19_000079"
     CDS             complement(86226..87266)
                     /gene="gatD"
                     /locus_tag="OQQ19_000079"
                     /EC_number="1.1.1.251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HCS1801854.1"
                     /translation="MKSVVNDTDGIVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPR
                     IFKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQ
                     CAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCE
                     NKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGSMQTFNSSEMSAP
                     QMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKI
                     LRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFTQAVRDIA
                     RNAMPGKVLLIP"
     gene            complement(87314..88669)
                     /locus_tag="OQQ19_000080"
     CDS             complement(87314..88669)
                     /locus_tag="OQQ19_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIC"
                     /protein_id="HCS1801855.1"
                     /translation="MFSEVMRYILDLGPTVMLPIVIIIFSKILGMKAGDCFKAGLHIG
                     IGFVGIGLVIGLMLDSIGPAAKAMAENFDLNLHVVDVGWPGSSPMTWASQIALVAIPI
                     AILVNVAMLLTRMTRVVNVDIWNIWHMTFTGALLHLATGSWMIGMAGVVIHAAFVYKL
                     GDWFARDTRNFFELEGIAIPHGTSAYMGPIAVLVDAIIEKIPGVNRIKFSADDIQRKF
                     GPFGEPVTVGFVMGLIIGILAGYDVKGVLQLAVKTAAVMLLMPRVIKPIMDGLTPIAK
                     QARSRLQAKFGGQEFLIGLDPALLLGHTAVVSVSLIFIPLTILIAVCVPGNQVLPFGD
                     LATIGFFVAMAVAVHRGNLFRTLISGVIIMSITLWIATQTIGLHTQLAANAGALKAGG
                     MVASMDQGGSPITWLLIQVFSPQNIPGFIIIGAIYLTGIFITWRRARGFIKQEKAVLA
                     E"
     gene            complement(88673..88957)
                     /gene="gatB"
                     /locus_tag="OQQ19_000081"
     CDS             complement(88673..88957)
                     /gene="gatB"
                     /locus_tag="OQQ19_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIB"
                     /protein_id="HCS1801856.1"
                     /translation="MKRKIIVACGGAVATSTMAAEEIKELCQNHNIPVELIQCRVNEI
                     ETYMDGVHLICTTARVDRSFGDIPLVHGMPFVSGVGIEALQNKILTILQG"
     gene            complement(88988..89440)
                     /gene="gatA"
                     /locus_tag="OQQ19_000082"
     CDS             complement(88988..89440)
                     /gene="gatA"
                     /locus_tag="OQQ19_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIA"
                     /protein_id="HCS1801857.1"
                     /translation="MTNLFVRSGISFVDRSEVLTHIGNEMLAKGVVHDTWPQALIARE
                     AEFPTGIMLEQHAIAIPHCEAIHAKSSAIYLLRPTNKVHFQQADDDNDVEVSLVIALI
                     VENPQQQLKLLRCLFGKLQQPDIVETLITLPETQLKEYFTKYVLDSDE"
     gene            complement(89510..90712)
                     /gene="gatZ"
                     /locus_tag="OQQ19_000083"
     CDS             complement(89510..90712)
                     /gene="gatZ"
                     /locus_tag="OQQ19_000083"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase subunit GatZ"
                     /protein_id="HCS1801858.1"
                     /translation="MKTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIE
                     ATSNQVNQFGGYTGMTPADFREFVFTIADKVGFARERIILGGDHLGPNCWQQENADAA
                     MEKSVELVKEYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQ
                     REQLSYVIGTEVPVPGGEASAIQSVHITHVEDAANTLRTHQKAFIVRGLTEALTRVIA
                     IVVQPGVEFDHSNIIHYQPQEAQPLAQWIENTRMVYEAHSTDYQTRTAYWELVRDHFA
                     ILKVGPALTFALREAIFALAQIEQELIAPENRSGCLAVIEEVMLDEPQYWKKYYRTGF
                     NDSLLDIRYSLSDRIRYYWPHSRIKNSVETMMVNLEGVDIPLGMISQYLPKQFERIQS
                     GELSAIPH"
     gene            complement(90741..91595)
                     /gene="gatY"
                     /locus_tag="OQQ19_000084"
     CDS             complement(90741..91595)
                     /gene="gatY"
                     /locus_tag="OQQ19_000084"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416599.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase subunit GatY"
                     /protein_id="HCS1801859.1"
                     /translation="MHVVSTKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAANLHAP
                     VIIAGTPGTFTHAGTENLLALVSAMAKQYHHPLAIHLDHHTKFDDIAQKVRSGVRSVM
                     IDASHLPFAQNISRVKEVVDFCHRFDVSVEAELGQLGGQEDDVQVNEADAFYTNPAQA
                     REFAEATGIDSLAVAIGTAHGMYASAPALDFSRLENIRQWVNLPLVLHGASGLSTKDI
                     QQTIKLGICKINVATELKNAFSQALKNYLTEHPEATEPRDYLQSAKSAMRDVVSKVIA
                     DCGCEGRA"
     gene            complement(91903..92955)
                     /gene="fbaB"
                     /locus_tag="OQQ19_000085"
     CDS             complement(91903..92955)
                     /gene="fbaB"
                     /locus_tag="OQQ19_000085"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006820796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I fructose-bisphosphate aldolase"
                     /protein_id="HCS1801860.1"
                     /translation="MTDIAQLLGKDADNLLQHRCMTIPSDQLYLPGHDYVDRVMIDNN
                     RPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAI
                     EAGCNCVVSTYGVLASVSRRYAHRIPFLVKLNHNETLSYPNTYDQTLYASVEQAFNMG
                     AVAVGATIYFGSEESRRQIEEISAAFERAHELGMVTVLWAYLRNSAFKKDGVDYHVSA
                     DLTGQANHLAATIGADIVKQKMAENNGGYKAINYGYTDDRVYSKLTSENPIDLVRYQL
                     ANCYMGRAGLINSGGAAGGETDLSDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKL
                     INAVQDVYLDSKITIA"
     gene            93212..94489
                     /locus_tag="OQQ19_000086"
     CDS             93212..94489
                     /locus_tag="OQQ19_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1801861.1"
                     /translation="MKTTAKLSFMMFVEWFIWGAWFVPLWLWLSKSGFSAGEIGWSYA
                     CTAIAAILSPILVGSITDRFFSAQKVLAVLMFAGALLMYFAAQQTTFAGFFPLLLAYS
                     LTYMPTIALTNSIAFANVPDVERDFPRIRVMGTIGWIASGLACGFLPQILGYADISPT
                     NIPLLITAGSSALLGVFAFFLPGTPPKSTGKMDIKVMLGLDALILLRDKNFLVFFFCS
                     FPFAMPLAFYYIFANGYLTEVGMKNATGWMTLGQFSEIFFMLALPFFTKRFGIKKVLL
                     LGLVIAAIRYGFFIYGSADEYFTYALLFLGILLHGVSYDFYYVTAYIYVDKKAPVHMR
                     TAAQGLITLCCQGFGSLLGYRLGGVMMEKMFAYQEPVNGLTFNWSGMWTFGAVMIAII
                     AVLFMIFFCESDNEITAIKVDDRDIALTQGEVK"
     gene            94486..95490
                     /locus_tag="OQQ19_000087"
     CDS             94486..95490
                     /locus_tag="OQQ19_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribosylglycohydrolase family protein"
                     /protein_id="HCS1801862.1"
                     /translation="MKTERILGALYGQALGDAMGMPSELWPRSRVKAHFGWIDRFLPG
                     PKENNAACYFNRAEFTDDTSMALCLADALLERKGKIDPDLIGRNILDWALRFDAFNKN
                     VLGPTSKIALNAIRDGKPVAELENNGVTNGAAMRVSPLGCLLPARDVDSFIDDVALAS
                     SPTHKSDLAVAGAVVIAWAISRAIDGESWSAIVDSLPSITRHAQQKRTTTFSASLAAR
                     LEIALKIVRNADGTESASEQLYQVVGAGTSTIESVPCAIALVELAQTDPNRCAVLCAN
                     LGGDTDTIGAMATAICGALHGINAIDPALKAELDAVNQLDFNRYATALAKYRQQREAV
                     "
     gene            95487..96452
                     /locus_tag="OQQ19_000088"
     CDS             95487..96452
                     /locus_tag="OQQ19_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS1801863.1"
                     /translation="MSGARLHTLLPELTTRQSVMVVGAAVIDVIADAYALPWRGCDIE
                     LKQQSVNVGGCALNIAVALKRLGIEAGNALPLGQGVWAEIIRNRMAKEGLISLIDNAE
                     GDNGWCLALVEPDGERTFMSFSGVENQWNRQWLARLTVAPGSLLYFSGYQLASPCGEL
                     LVEWLEELQDVTPFIDFGPRIGDIPDALLARIMACRPLVSLNRQEAEIAAERFALSAE
                     ITTLGKQWQEKFAAPLIVRLDKEGAWYFSNDASGCIPAFPTQVVDTIGAGDSHAGGVL
                     AGLASGLPLADAVLLGNAVASWVVGHRGGDCAPTREELLLAHKNV"
     gene            complement(96426..97172)
                     /locus_tag="OQQ19_000089"
     CDS             complement(96426..97172)
                     /locus_tag="OQQ19_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1801864.1"
                     /translation="MEQAHTQLIAQLNERILAADNTPLYIKFAETVKNAVRSGVLEHG
                     NILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFS
                     QQVVLRGKKPDTLWVNKRVVKCPEEVAQQLAVEAGSDVFLLKRIRYVDEEAVSIEESW
                     VPAHLIHDVDAIGISLYDYFRSQHIYPQRTRSRVSARMPDAEFQSHIQLDSKIPVLVI
                     KQVALDQQQRPIEYSISHCRSDLYVFVCEE"
     gene            complement(97224..98042)
                     /locus_tag="OQQ19_000090"
     CDS             complement(97224..98042)
                     /locus_tag="OQQ19_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416605.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 25 protein"
                     /protein_id="HCS1801865.1"
                     /translation="MQLRITSRKKLTSLLCALGLISIVAIYPRQKVNFFYSTAVQITD
                     YIHFYGYRPVKSFAIRIPASYTIHGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKAT
                     EGEKLVDPYFSRNWQLSRENGLLRGAYHYFSPSVAAPVQARLFLQTVDFSQGDFPAVL
                     DVEERGKLSAKELRKRVSQWLKMVEKSTGKKPIIYSGAVFYHTNLAGYFNEYPWWVAH
                     YYQRRPDNDGMAWRFWQHSDRGQVDGINGPVDFNVFNGTVEELQAFVDGIKETP"
     gene            complement(98107..98907)
                     /gene="thiD"
                     /locus_tag="OQQ19_000091"
     CDS             complement(98107..98907)
                     /gene="thiD"
                     /locus_tag="OQQ19_000091"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HCS1801866.1"
                     /translation="MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQ
                     NTRGVQSVYRIESDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRYQIQYV
                     VLDTVMLAKSGDPLLSPSAVATLRSRLLPQVSLITPNLPEAAALLDAPHARTEQEMLE
                     QGRSLLAMGCGAVLMKGGHLDDEQSPDWLFTREGEQRFTAPRIMTKNTHGTGCTLSAA
                     LAALRPRHTNWADTVQEAKSWLSSALAQADTLEVGHGIGPVHHFHAWW"
     gene            complement(98904..99692)
                     /gene="thiM"
                     /locus_tag="OQQ19_000092"
     CDS             complement(98904..99692)
                     /gene="thiM"
                     /locus_tag="OQQ19_000092"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HCS1801867.1"
                     /translation="MQVDLQSSAQSAHALHLFHQHSPLVHCMTNDVVQTFTANTLLAL
                     GASPAMVIETEEASQFAAIASALLINVGTLTQLRAQSMCAAVEQAKSSQTPWTLDPVA
                     VGALDYRRRFCLELLPHKPTAIRGNASEIMALAGIANGGRGVDTTDAAANAIPAAQTL
                     ARETGAIVVVTGEMDYVTDGHRIIGIHGGDPLMTKVVGTGCALSAVVAACCALPGDTL
                     ENVASACHWMKQAGERAVARSEGPGSFVPHFLDALWQLTQEVQA"
     regulatory      complement(99727..99823)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(101404..101697)
                     /locus_tag="OQQ19_000093"
     CDS             complement(101404..101697)
                     /locus_tag="OQQ19_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000274322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1801868.1"
                     /translation="MYGQDTTAGGNLKKDSPLGKLWDFLHSPDLPTNPDFAKPADKTG
                     WVSSYSNPTYVPPTPTITAPQLKVDMAGNPLMTPPAWLNQPLNVNVNVKVQDG"
     gene            complement(101661..>102508)
                     /locus_tag="OQQ19_000094"
     CDS             complement(101661..>102508)
                     /locus_tag="OQQ19_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005113789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tail tape measure protein"
                     /protein_id="HCS1801869.1"
                     /translation="GAVGLFVKALNQMKGTTNLTEKDLFDLMQQGKLFSKDILPEVAK
                     QMKAAARNGGALDKAMKSNRASWQRLQTSMQNAMNIFFASGFGNELTSAFDAISAAVN
                     GSGGAFEMFGHIAGKIVEGATDAFTELHDTVILTFRIIEYYASKMGITGEQLKAWGEM
                     AAYAAGVAMFAGSIWKLGVAFKWLLTMLNPLTKLLGVMKGIAAIGGIEAATTGGSGGE
                     GKDKPNKPGRGPKVGKVGGAAALSGGPVGWSIAVGSVGGDYAWDKVMTLTTPCMDRTP
                     PPGAI"
BASE COUNT        25764 a        26283 c        24599 g        25862 t
ORIGIN      
        1 cagtgacaaa gggatgccag cgtttttcaa acagaatatg agcgatcccg gttcggcgcg
       61 gcggtaaggt cgcgactttg agttttggct tcttcaactc tttcatcacc acccagagcg
      121 ttatcaccag caaaacggca accaacggcc acacagacaa attaaaagtc tcagcaatag
      181 agttatgttc agtactgtag tgctgcaagg tttgatttaa accactggca tgtggagaac
      241 gcatcaccgc actcatcacc atataagtga aaagcgcgat ccaactgccg atcaatccct
      301 cacccgcgcg ataccaggtc ccggtggcac atccacccgc cagaacaatt cccagcccga
      361 agatataccc acctataaca gtaccaggcc acgggaacgc cccggcttcg taagtcagta
      421 ggcccgccta aattaacgca aaaaccccca cactttgtac cgaaattgca atcagcaagg
      481 cgtaaaacat gcgattattt ttcgcgatat acatatcgcg aaaaccacca gtcaggcaaa
      541 aacgcccacg ctgcatgaca aatcccagca gagcaccaca aattagcccg cttaatatca
      601 ttgaaaacat aaattaatta accagatgaa tgttaatgag gaaattattc atgactggtg
      661 gaatgcagac caataaccaa attctctaaa ttagaacaaa tggttcttaa tgaggatttc
      721 gataaaaaag aataaaaaaa ccggagccaa atattcattc gactccggtt gattattaga
      781 aaagatgatt atgctacgtc ttcgtactgc ggaaccgggt tacggaagct cttggtgacg
      841 caagccaggt aaatcagacc gatagcagcc cagatcagac ccagaaccat tgagctttct
      901 tccaggttaa cccacagcgc accaacggtc agcgcaccac acatcggcag gaacagatac
      961 tggaagtgat ctttcagcgt cttattacgc ttctcacgga tccagaactg cgagatgacc
     1021 gacaggttaa cgaaggtgaa cgccaccagc gcaccaaagt taatcagcgc cgttgccatt
     1081 accaggtcga agttgattgc cagcagggca atcgcgccaa ccaggatgat gttcatcgcc
     1141 ggagtacgcc atttcgggtg tacataaccg aagaagcttt tcgggaatac gccgtcacga
     1201 cccattacgt acatcagacg cgctacgcct gcatgcgccg ccataccgga cgccagtacg
     1261 gtaatggtgg agaagatcag cgcgccaacc tggaacgctt tacccgcaac gtacagcatg
     1321 atttcaggct gtgacgcatc cggatcttta aagcgagaga tatccgggaa gtacagctgc
     1381 aggaagtaag ttgcaaagat gaagatcatg ccgccgatca gcgcggtcag gaaaatcgca
     1441 cgcgggatca cgcgctctgc atctttggtt tcttccgaca ggttgctgat gccgtcaaag
     1501 ccggtaaagg agaagcacag gattgtcgcc ccggtaatca tcgggataac atgcgcatcg
     1561 ccagaccaga atggacgagt gctcgccagc gtaccagcgc cttcaccttc aaatacgcca
     1621 taaacaacca tgcccagaat caccgcgatc agcaccacct gcaacacgac gattacagtg
     1681 ttgaagttcg ctacggattt cagactacgc aggttaaagg cggtcatgaa ggccaccaac
     1741 gccaccacaa acatccacga tgggatggaa ggcaccagag cttcaaaata gattttcgcc
     1801 agcagaatgt tgatcatcgg cgcgaacaga tagtcgagca gagaagacca acccaccata
     1861 aagccgacag tcgggctaat ggatttctgg gcgtaagtgt atgcagagcc agcagaagga
     1921 tagcggcgaa ccagcttccc gtagctcaga gccgtaaaca ggatcgcaat caatgcgaac
     1981 gcataggctg tcggcacatg accatccgtg aggcctgaaa cgataccaaa agtatcaaac
     2041 agcgtcatcg gctgcatata ggcaagaccc atcattacaa ccggaactaa cgtaagcgtt
     2101 ttacgcaatt ccacgcgaga ggtgtttgga gtaacgttat gcgacatggt cattctcctt
     2161 tacggtgata accgtcgcgt aagcaaaaaa ttgccccatt tttttggatt cctcagcgac
     2221 aacaactgtc gatttttagt aaatatctat ccggtacgaa gcccggcctc ttggtatgaa
     2281 tgattggttt gaagcaaaaa ataaccgacg ctgatgaaac gtcggttttt agtcattttt
     2341 tgacagcggc gcattgtgcc taaatggggg ggaaatgaca agagaatgag aggcttgtca
     2401 taataatttt tctttaaatg gctgattttc cgtcatcaga ttttgcataa acaccggcga
     2461 tcgcactatt tgctaaaatt tcatcccgcc accagccact ggcaagtcct gcggtctgtt
     2521 cattccagcc aatccagacg ggttcaaaga gagtttgggc gaccactttc ttctcgatta
     2581 acgcgccact atcgagaaaa tgttgcgcca gataacgggg taaatagccg cagccgaggc
     2641 cgctaatttg cagctccagc ttggttttaa aatcgaaaac ggtaatggct tcttgttcgt
     2701 cgagaagttg tgaggccgta gaagcgcctg cctgcgcagt atcccccacc acaatcgccc
     2761 gatatcgctt aataatacga cgatttaacg gctcttcttc cagggctaac ggatgatgag
     2821 gcgcgaccgc aaagacttgt tccagatcgc ccaaccgtga aaaaccaaac tcactggaag
     2881 atggtggctc atgcatcgcg ccaacaataa tatccgctcg cccctgagtc agggcatccc
     2941 atgaaccacc cagtacgcca ttgataaact tcaggcgcgt cacgctatga tgttgataaa
     3001 aagcttcaat cagtggcgct agcagagaaa aaggaaacgt gtcgtccacg ccaatcacca
     3061 gctcgttttc ccagccttca tgcagtttga tcgcctgctt ttccagttcc cgcacggtat
     3121 gcagaacttc ccgccctttc tctaataaca tttttccggt gcgggtgaat ttagcgcggt
     3181 gaccgctacg atcaagcaat tgaatattaa ggtcgctttc cagcttgtga acggtgtaac
     3241 tcagagcgga cggcgtcttg tagagtttgg ccgacgccgc cgcaaaactg ccttcttttt
     3301 ctaaggcatc gaggatcatc aacacatcca gcagtggttt catacacgcc cccttgcagt
     3361 gtatgcggcg tcctgctggc gtgatcgttt actccagcgg cattaccagc ggatcgggat
     3421 actggtattc aaatcccagt tcattacaaa tccgactgcc atcaataatc ttacctttgc
     3481 cgctgtccag actatttctg aactgcggag gttccagccc cagtaaacgg gccatctgcg
     3541 gatagaaaac attacgcgca gggtgagctg gcgcacatat attatagatg tgtccgcctt
     3601 taggtgcctg taacaacaga gtgatagcgc caataacatc ttctaaatgg actaaattaa
     3661 caccatgttc accatcaggc gcggtttttc cggcaaagaa gcgtccggga tgacgccccg
     3721 gtccgaccag gcccgcaaga cgcagaatat cgaccgaagt accgggtaaa ttgtgcagcc
     3781 agtcttcgag ttcttctaat actcgtccac tgttggttac cggattacgc ggggtagttt
     3841 ctttcaccat gccttgcgca tcgccataga cagatgttga gctggtaaaa ataattcggg
     3901 gaatacgatg ggccagcgcg ctatccacta actcttgtac cgcttgtaaa tagaactcat
     3961 cgccggagcc gctacgacgt gccggaagcg taatgaccag tgcatcggca tccatcaggg
     4021 catccagatc gtcagaatcg caaactaact caggctccat gcgaagcaga tagctatcaa
     4081 tgccactcat tcgggccgct tcgacaccat cttgtgtggt tttactcccg gtgacttgcc
     4141 agcctcgcgc tgaaagtgac atcgccagcg gcatgcctaa ccaccctaac ccgacaattg
     4201 cgaccttttt catccgttat ctcctgatac accttagatc tataaggcta cgctagcgta
     4261 tcaaaactga caattcattc tatgaatgaa tctgttcaat aatgataacg acatgctgca
     4321 atgagcagtg aatcgtcggt aaccgcgtat accagacggt gctcctctgt aatgcgtcgg
     4381 gactagaaac ctgacaaatt atgtttcagg ggttctggct tccccttacc ttcaaatggc
     4441 gttctgcggg tatctttgat aagttcattg atctttttaa caattcgctt atctgtttcc
     4501 tgccagtaca gataatcatc ccatgattcc tcagaccaga ttagtttcac tcaataatgt
     4561 ccttttctgt tcctttgcct gatttcaggc tatcgattga gtccatcaat ctccgggcgt
     4621 tagcggggga acgcagtaga taagccgtct cttccagcga gttgtattct tcgagtgaca
     4681 tcagaacaca agcctctcca ttctgacgag taataaggat cggggcatga tcttcaacgg
     4741 ctttcatcat tgttgccgac aaattctgac gcgcttcgct gtagctaatt gtacgcatgt
     4801 caatctcctc ttttgtacag ttcattgtac aatgatgggc gttaattaac tatttattaa
     4861 ttagtttgta gatcaaggta ttgtcagtga gacgaaaatc caggcttcgc tatttttggt
     4921 gccgtcagct tagaggacag tcctcttagc cccctccttt ccccgctcat tcattaaaca
     4981 aatccatcgc catagaatat ataaaaaagc ccttgctttc taacgtgaaa gtggtttagg
     5041 ttaaaagaca tcagttgaat aaacattcac agagactttt atgacacgcg ttcaatttaa
     5101 acaccaccat catcaccatc atcctgacta gtctttcagg cgatgtgtgc tggaagacat
     5161 tcagatcttc cagtggtgca tgaacgcatg agaaagcccc cggaagatca ccttccgggg
     5221 gcttttttat tgcgcggttg ataacggttc agacaggttt aaagaggaat aagaaaatga
     5281 cagacaacac tcgtttacgc atagctatgc agaaatccgg ccgtttaagt gatgactcac
     5341 gcgaattgct ggcgcgctgt ggcattaaaa tcaatcttca cacccagcgc ctgatcgcga
     5401 tggcagaaaa catgccgatt gatattctgc gcgtgcgtga cgacgacatt cccggtctgg
     5461 taatggacgg cgtggttgac ctcgggatta tcggcgaaaa cgtgctggaa gaagagctgc
     5521 ttaaccgccg cgcccagggt gaagatccac gctactttac cctgcgtcgt ctggatttcg
     5581 gcggctgccg actttcactg gcaacgccgg ttgatgaagc ctgggatggc ccgctctcct
     5641 taaacggtaa acgtatcgcc acctcttatc ctcacctgct caagcgttat ctcgaccaga
     5701 aaggtatctc ttttaaatcc tgcttactga acggttctgt tgaagtcgcc ccgcgtgccg
     5761 gactggcgga tgcgatttgc gatctggttt ccaccggtgc cacgctggaa gctaacggcc
     5821 tgcgcgaagt cgaagttatc tatcgctcga aagcctgcct gatacaacgc gatggcgaaa
     5881 tggaagaatc caaacagcaa ctgatcgaca aactgctgac ccgtattcag ggtgttatcc
     5941 aggcgcgtga atcaaaatac atcatgatgc acgcaccgac cgaacgtctg gatgaagtca
     6001 tcgccctgct gccaggtgcc gaacgcccaa ctattctacc gctggcgggt gatcaacagc
     6061 gcgtagcgat gcacatggtc agtagcgaaa ccctgttctg ggaaacgatg gaaaaactga
     6121 aagcgctggg tgccagttca atcctggtcc tgccgattga gaagatgatg gagtgatcgc
     6181 catgagcttt aacacaatca ttgactggaa tagctgtact gcggagcaac aacgccagct
     6241 gttaatgcgc ccggcgatct ccgcttctga aagcattacc cgcactgtta acgatattct
     6301 cgataacgtg aaagcacgcg gcgatgaggc cctgcgggaa tacagcgcga agtttgataa
     6361 aaccacggtt accgcactga aggtgtctgc tgaggaaatt gccgccgcta gcgaacgcct
     6421 gagcgacgag ctaaaacagg cgatggcggt ggcagtgaag aatattgaaa ccttccacac
     6481 tgcgcaaaaa ctgccgccgg tagatgtaga aacgcagcca ggcgtgcgtt gccagcaggt
     6541 cacgcgcccg gtcgcttcag ttgggttgta tattcctggc ggctccgccc cgctcttctc
     6601 aacggtatta atgctggcga ctccggcgcg tattgcgggc tgtaaaaaag tggtgctgtg
     6661 ctcaccgccg ccgattgccg atgagatcct ttatgcggcg cagctgtgcg gtgtgcagga
     6721 cgtgtttaac gtcggcggcg cacaggccat tgccgcactg gcgtttggta cggaatctgt
     6781 gccgaaagtg gacaaaatct tcgggccggg caacgccttt gtcaccgaag cgaaacgtca
     6841 ggtgagccag cgtctggacg gtgcggcgat cgatatgccc gcaggcccgt cggaagtgtt
     6901 ggtcattgcc gacagtggcg caacgccgga tttcgtggct tctgatttgc tttctcaggc
     6961 tgaacacggc ccggactcac aggtgatttt actgacgccc gctgctgata tggcgcgtcg
     7021 cgttgccgag gctgtcgaac gccagctggc agaactgccg cgtgctgaaa ccgcccgtca
     7081 ggcactgaac gccagccgcc tgatcgtgac taaagattta gcgcagtgcg tagagatctc
     7141 caaccagtac ggcccggagc acctgatcat ccagacccgc aacgcccgcg atctggtcga
     7201 tggcattacc agtgccggtt cggtatttct tggtgactgg tcactggaat cggcaggtga
     7261 ttacgcctcc ggcaccaacc acgttctgcc gacttacggt tacaccgcca cctgttccag
     7321 cctcgggctg gcagatttcc agaagcgcat gaccgtgcag gaactgtcga aagaaggttt
     7381 ctccgcgctg gcttcgacca ttgaaacatt ggccgccgcc gagcgcctga ccgcccataa
     7441 aaatgccgtt actttacgtg ttaacgccct taaggagcaa gcatgagcat cgtgactatt
     7501 accgatttag cgcgtgaaaa cgtgcgcaac ctgacgccgt atcagtcggc gcgtcgtctg
     7561 ggcggtaacg gcgatgtctg gctgaacgcc aacgaatatc ccacagccgt ggaatttcag
     7621 cttactcagc aaacgctcaa ccgctacccg gaatgtcagc cgaaagcggt gattgaaaat
     7681 tacgcgcaat atgcaggcgt aaaaccggaa caggtgctgg tcagccgtgg cgcggacgaa
     7741 ggtattgaac tactgattcg cgctttttgc gaaccgggta aagacgccat cctctactgc
     7801 ccgccaacgt acggcatgta cggcgtcagc gccgaaacca ttggcgtcga gtgccgcaca
     7861 gtgccgacgc tggacaactg gcaactggat ttacagggca tttccgacaa gctggaaggc
     7921 gtaaaagtgg tctatgtttg cagccccaac aacccgaccg ggcaactgat caatccgcag
     7981 gattttcgca ctctgctgga gttaacccgc ggtaaagcga ttgtggttgc cgatgaagcc
     8041 tatatcgagt tttgcccgca ggcatcgctg gctggctggc tggcggaata tccgcacctg
     8101 gctattttgc gcacactgtc gaaagctttt gctctggcgg gccttcgttg cggatttacg
     8161 ctggcaaacg aagaagtcat caacctgctg atgaaagtga ttgcccccta cccgctctcg
     8221 acgccggttg ccgacattgc ggcccaggcg ttaagcccgc aggggatcgt cgccatgcgt
     8281 gagcgggtgg cgcaaattat tgcagaacgc gaatgcctga ttgccgcact gaaagagatc
     8341 ccctgcgtgg agcaggtttt cgactctgaa accaactaca ttctggcgcg ctttaaagcc
     8401 tccagtgcag tgtttaaatc tttgtgggat cagggcatta tcttacgtga tcagaataaa
     8461 caaccctctt taagcggctg cctgcgaatt accgtcggaa cccgtgaaga aagccagcgc
     8521 gtcattgacg ccttacgtgc ggagcaagtt taatgagtca gaagtatctt tttatcgatc
     8581 gcgatggaac cctgattagc gaaccgccga gtgattttca ggtggatcgt tttgacaaac
     8641 tcgcctttga accgggcgtg atcccggaac tgctgaagct gcaaaaagcg ggctacaaac
     8701 tggtgatgat cactaatcag gatggtcttg gaacacaaag tttcccgcag gcggattttg
     8761 atggcccgca caacctgatg atgcagatct tcacctcgca aggcgtgcag tttgatgaag
     8821 tgctgatttg cccgcacctg cccgccgatg aatgcgactg ccgtaagccg aaagtaaaac
     8881 tggtggagcg ttatctcgct gagcaagcga tagatcgcgc caacagttat gtgattggcg
     8941 atcgcgcgac cgatattcaa ctagcagaaa acatgggcat tactggttta cgctacgacc
     9001 gcgaaaccct gaactggccg atgattggcg agcaacttac caaacgagac cgttacgccc
     9061 atgtagtgcg caacaccaaa gagacgcaga ttgacgttca ggtgtggctg gatcgcgaag
     9121 gtggcagcaa gattaacacc ggcgttggct tctttgatca tatgctggat cagatcgcca
     9181 cccacggcgg tttccgcatg gaaatcaacg tcaaaggcga cctctatatc gacgatcacc
     9241 acaccgtcga agataccggc ctggcgctgg gtgaagcgtt aaaaattgcc ctcggcgata
     9301 aacgcggtat ttgtcgcttt ggttttgtgc tgccgatgga cgaatgcctt gcccgctgcg
     9361 cactggatat ctctggtcgc ccgcacctgg aatataaagc tgaatttacc taccagcgcg
     9421 tgggcgatct cagcaccgag atgatcgagc acttcttccg ttcgctctct tacaccatgg
     9481 gcgtgaccct gcacctgaaa accaaaggta aaaacgatca ccaccgtgta gagagcctgt
     9541 tcaaagcttt tggtcgcacc ctgcgccagg ccatccgcgt ggaaggcgat accctgccct
     9601 cgtcgaaagg agtgctgtaa tgaacgtggt gatccttgat actggctgcg ccaacctgaa
     9661 ctcggtgaag tctgccattg cgcgccacgg ttatgaaccc aaagtcagcc gtgacccgga
     9721 cgtcgtgttg ctggccgata aactattttt acccggcgtt ggcaccgcac aagcagcgat
     9781 ggatcaggtg cgtgagcgcg agctgtttga tctcatcaaa gcctgtaccc aaccggtgct
     9841 aggcatctgc ttagggatgc aactgctggg gcggcgcagc gaagagagca acggcgtcga
     9901 tttgctgggc atcatcgacg aagacgtgcc gaaaatgacc gactttggtc taccgctgcc
     9961 ccatatgggc tggaaccgcg tttacccgca ggcaggcaac cgcctgtttc aggggattga
    10021 agacggcgcg tacttttact ttgttcacag ctacgcaatg ccagtcaatc cgtggaccat
    10081 cgcccagtgt aattacggcg aaccgttcac cgcggcggta caaaaagata acttctacgg
    10141 cgtgcagttc cacccggagc gttctggtgc cgctggcgct aagttgctga aaaacttcct
    10201 ggagatgtga tgattattcc ggcattagat ttaatcgacg gcaccgtggt gcgtctccat
    10261 cagggcgatt acggcaaaca gcgcgattac ggtaacgacc cgctgccgcg cttacaggat
    10321 tacgccacgc agggtgccga agtgttgcat ctggtggatc tgaccggggc aaaagatcca
    10381 gcaaaacgtc aaatcccgtt gattaaaacc ctggtcgcgg gcgttaacgt tccggtgcag
    10441 gttggcggcg gcgtgcgtag cgaagaagac gtggcggcgt tactggaagc gggcgttgcg
    10501 cgcgtggtgg tcggctccac cgcggtgaaa tcaccagaaa tggtgaaagg ctggtttgaa
    10561 cgtttcggtg ccgatgcctt agtgctggcg ctggatgtcc gtattgacga gcaaggcaac
    10621 aagcaggtgg cagtcagcgg ctggcaagag aactcgggcg tttcactgga acaactggtg
    10681 gaaacctatc tgcccgtcgg cctgaaacat gtgctgtgta ccgatatctc gcgcgacggc
    10741 acgctggcag gttctaacgt ctctttatat gaagaagtgt gcgccagata tccgcaggtg
    10801 gcatttcagt catccggcgg cattggcgac attaacgatg ttgctgccct gcgtggcact
    10861 ggcgtgcgcg gcgtaatagt tggtcgggca ttattggaag gtaaattcac cgtgaaggag
    10921 gccatcgcat gctggcaaaa cgcataattc cgtgtctcga cgttcgtgat ggtcaggtgg
    10981 tgaaaggcgt acagtttcgc aaccatgaaa tcattggcga tatcgtgccg ctggcaaaac
    11041 gctacgccga agaaggtgca gacgaactgg tgttctacga tatcaccgct tccagcgatg
    11101 gccgtgtggt agataaaagc tgggtatctc gcgtggcgga agtgatcgac attccgttct
    11161 gcgtggcggg tgggattaag tctctggaag atgccgcgaa aattctttcc tttggcgcgg
    11221 ataaaatttc catcaactcg cctgcgctgg cggatccgac gttaattact cgcctggcgg
    11281 atcgttttgg cgtgcagtgt attgtggtgg gtattgatac ctggtacgac gctgaaaccg
    11341 gtaaatatca tgtgaatcaa tataccggcg atgaaagccg cacccgcgtc actcagtggg
    11401 aaacgctcga ctgggtacag gaagtgcaaa aacgcggtgc cggagaagtc gtcctcaaca
    11461 tgatgaatca ggacggcgtg cgtaacggtt acgacctcga acaactgaaa aaagtgcgtg
    11521 aagtttgcca cgtcccgcta attgcctccg gtggcgcggg caccatggaa cacttcctcg
    11581 aagccttccg tgatgccgac gttgacggcg cgctggcagc ttccgtattc cacaaacaaa
    11641 taatcaatat tggtgaatta aaagcgtacc tggcaacaca gggcgtggag atcaggatat
    11701 gttaacagaa caacaacgtc gcgaactgga ctgggaaaaa accgacggac ttatgccggt
    11761 gattgtgcaa cacgcggtat ccggcgaagt gttaatgctg ggctatatga acccggaagc
    11821 cttagacaaa accatagaaa gcggcaaagt cgccttcttc tcgcgcacta aacagcgact
    11881 gtggaccaaa ggcgaaacgt cgggcaattt cctcaatgtg gtgagtattg caccggactg
    11941 cgacaacgac acgttactgt tactggtgaa tcctatcgga ccaacctgcc ataaaggcac
    12001 cagcagctgc ttcggcgaca ccgctcacca gtggctgttc ctgtatcaac tggaacaact
    12061 gctcgccgaa cgcaaatctg ccgacccgga aacctcctac accgccaaac tgtatgccag
    12121 cggcaccaaa cgcattgcgc agaaagtggg cgaagaaggc gtggaaaccg cactggcagc
    12181 gacagtacat gaccgctttg agctcaccaa cgaggcgtct gatttgatgt atcacctgct
    12241 ggtgctgttg caggatcagg atctggactt aacgacggtg attgagaacc tgcgtaaacg
    12301 gcatcagtga gttgcggggt aagcggatgc gatattgttg tagcatccgg aaaaaaaaac
    12361 gggcaaggtg tcaccaccct gccccttttc tttaaaaccg aaaagattac ttcgcgttgt
    12421 aattacgcag agcgttacgc cccaagacaa tccccgcgcc aaccatgccg cccagcagca
    12481 ccgccagaat caaggtaatt gcctttttcg ggctatcgcg acgaataggt aacgtcggtt
    12541 tcattacata gcggtaagca tgaatatcaa gtttatcaac gtcaagattg tcgatatcca
    12601 gcaggttttg acgagtctga tagtagtttg gtgagaacac caacggacga gtcgcttcat
    12661 gcttaatcat cgactccagc gcttcgctcc ccaaaaggaa caacgtatct tgtgtcacat
    12721 cttcagtctg ctgaacctgt ggctttgtca cctgcgcctg attcgcatac tgcaacgctt
    12781 cctgaatctg acggatacgc agatctttct gctcctgcgc aactacttcc tgagttttca
    12841 gagaatcctg caagtttttc atacgcagcg cgatgttgtc tttcaggtct tttcccagtt
    12901 cttcatttac ctggtcgtca acttgctgga tatacttcgc cagctgcttc tgagcacctt
    12961 caggtgtttc accaacataa gacaccgcta aaggtaatga ctgatttttg acggtaggct
    13021 caatggtcag cttttctgct tcttcctggt tatccagcgt ttccgctaat gctgagaatg
    13081 cagtgctgta acgtccgata agtgaagcct gaatgtcgga gactttcggt acagccgatc
    13141 cgtagatcac attcatcgcg ttggtataac cagcgatttg ccccacatca ggttgagtaa
    13201 cgatagctgt ggaagtccac ttttctttgg caacggccag ataccctata gccagggcaa
    13261 tagcaacaat gacagagatg ataattgtca tcttgccacg ccacaactgc accagtaaat
    13321 caatcaaatc aatctgttcc ggatcatggt tttgcccaga aacattatta ttttctactc
    13381 tcatcattac cctaacggac gaaataattt taagtcgcca tagtttagcg ataatcgcca
    13441 tgaatgctat aggataaatg ataaaaataa tgaattatta caaagggaac ataagagaat
    13501 cagggcgaaa atcgccatga taacaggatg ttagtcactg ccaaagagat cgcgggtgta
    13561 gactttgtct gccacatcct taagctcttc tgccatacgg ttggagataa tgacgtcggc
    13621 ttgtatagtc agcttagaac agctttgatt gtaaaatgag cacgttacca gaaaaaacag
    13681 ccaagtttag aactgatacc gattatcttt ttttcttgtc taacggtata atttaacttt
    13741 cagttatgcc agatgaagat tggctatatt ctagcctgag cgaggattat aaatgaaatt
    13801 tctggttacg ggagctgctg gctttatcgg tttctatcta agtaaacggc ttcttgcagc
    13861 tggtcatcag gttgtaggca ttgacaactt aaatgattat tacgatgtca acctcaaaca
    13921 agcacgactt gatttactca agcacgacaa cttcagtttt tataaaattg acctggccga
    13981 tcgtgagaaa atggcggcac tgtttgcaga cgagcggttc gaacgcgtaa taaacctcgc
    14041 tgcgcaagcc ggtgtacgtt actctcttga aaatcccaat gcatatgcag atgcaaacct
    14101 gattggattc ctgaacatac tagaaggatg tcgccataat aatgttcagc atctacttta
    14161 cgcttcctcc agttctgttt atggcatgaa ccgcaagatg cctttctcta cagatgactc
    14221 tgtagatcat cctgtttcgc tttatgcagc aactaaaaaa gcgaatgaac tcatggccca
    14281 tacatattct catttgtatg gcttaccgac cacagggctg cgtttcttta cggtttatgg
    14341 tccatgggga cgtccggata tggcattatt taaattcact aaagccatgc tggaaggtaa
    14401 aagcattgat gtttacaact tcggcaaaat gaagcgtgac tttacttaca ttgatgatat
    14461 tgccgaagct attattcgct tacaggatgt tattccagaa aaaaacccac agtgggctgt
    14521 agaaacaggc tcgcctgcaa caagttcagc accatatcgt gtctataaca ttggtaatag
    14581 ttcgcctgtg gagttgatgg actatatcaa tgcgttagaa gaggctctgg gtattgaagc
    14641 caacaaaaat atgatgcctc tccaacccgg tgatgtactg gaaaccagtg ctgatacaaa
    14701 agcactgtat gacgtaatag gattcaaacc tgaaacgtca gttaaagaag gggtaaagaa
    14761 ctttgtagaa tggtatcgta acttctataa agtttgattt tacaaaacca taagaaaagg
    14821 ccctaattta ttagggcctt ttcttagaat gaaacaaaat aattaatcat tgccaaacaa
    14881 gtcgcgcgta taaactttat ctgctacatc agccagatcg gcagacatac ggttagaaat
    14941 aataacatca gcttcttgtt tgaacgcatc cagatcacgt accacgcgcg accggaaaaa
    15001 atcgtcctct ttcatagctg gctcataaac gattacaggc acacctttcg ccttgattcg
    15061 cttcataata ccctgaatcg aggaagcacg aaaattgtct gaaccattct tcataatcaa
    15121 acgatagacg ccaacaactt tcggtttacg tgcaaggata gaatcggcaa taaaatcttt
    15181 gcgcgtgcgg ttggcgtcaa caattgccga gatcaggtta ttcggcacag actggtaatt
    15241 tgccagtaac tgcttagtat ctttcggcag acaataacca ccataaccga atgacgggtt
    15301 gttgtagtga ttaccgatac gcgggtcaag gcatacgccc tcaataatct ggcgtgaatt
    15361 aagtcccagg ctttcagcat aactatcaag ttcattgaaa tacgctacac gcatcgccag
    15421 ataagtgttc gcaaaaagtt taatcgcctc agcctcggtt gagtcagtaa acaatgttgg
    15481 tatgtcttgc ttaatggcgc cttcctgtaa taacgcagca aaacgtttag cgcgttcaga
    15541 ctgctcgcca atcacaatgc gtgatgggtg taagttatca taaagtgctt taccttcacg
    15601 caaaaactca ggcgaaaaga tcacattttc aataccaaaa cgttctttaa tggactctgt
    15661 aaaaccaaca gggatagttg attttataat cattaccgcg ttgggattaa tttctgtcac
    15721 atcacgaatg accgcttcca cgcttgaggt attaaaataa tttgttttcg gatcataatc
    15781 ggtaggtgtg gcaataataa cgtaatcggc atttttatac gcgtcatact tatctgtcgt
    15841 agcgcggaaa ttgagatctt tagtcgccag atactcttca atctccttat caacaagcgg
    15901 tgactgcctc ttgttaagca tgtccacttt ggcctgaacg atatccagtg caaccacttc
    15961 gtggttttgc gcaatcagaa taccatttga aagaccaaca taacctgttc ctgaaattgt
    16021 tattttcatt agctctgact tcttccggtt aaacatttag agtggtcatt aatccaccac
    16081 cacagcttca tctactgcgg gatttttaac gctgatgtag atgaactgtc aaggcagcga
    16141 tcctgctgtg cggcgctgta ttatatcgcg tttttaacta taaattataa aaaaaggccc
    16201 taacctgccg ctttgtataa taaaaaagcc cggagggttt ctccgggcct tgctttgatt
    16261 aattgattta aatcagatta atccagccat tcggtatgga acacaccttc tttatcaatg
    16321 cgcttataag tatgcgcacc gaaatagtca cgctgtgcct ggatcaggtt cgcaggcaga
    16381 acagcggcac ggtagctgtc ataataggca accgcagcgg cgaaggtcgg aaccgggata
    16441 ccgttctgta ctgcataagc aacgacatca cgcagcgcct gctggtaatc atcggcaatt
    16501 tgtttaaagt acggagccag cagcaggtta gcgatctgcg gattttcggc atatgcatca
    16561 gtgatttttt gcaggaactg cgcacggatg atgcagccag cacggaaaat cttcgcgatt
    16621 tcgccgtagt tcagatccca gttgtactct tcagacgcag cacgcagctg agagaagccc
    16681 tgggcgtaag aaacgatttt gcccagatac agagcacgac gaactttttc gatgaactca
    16741 gccttgtcgc cagctggctg cgcttgcggg ccagagagaa ctttagatgc ggcaacacgc
    16801 tgatctttca gagaagagat ataacgtgca aacacagact cggtaatcag cgacagcggt
    16861 tcgccgagat ccagcgcact ctggctggtc catttacccg tacctttgtt agccgcttca
    16921 tccaggatca catcaaccag gtagttaccg tcttcatctt ttttggtgaa gatatctttg
    16981 gtgatgtcga tcaggtagct gctcagttca ccgttattcc actcggtaaa ggtctgcgcc
    17041 agttcttcgt tggtgaggtt caggccacct ttaagcagag aataggcttc agcaatcagc
    17101 tgcatatcgc cgtattcaat accgttgtga accatcttca cataatggcc tgcaccatcg
    17161 gcaccgatat aggtaacaca tggctcaccg tcttcagcca ctgcggcgat tttagtcagg
    17221 atcggcgcaa ccagttcata ggcttctttc tggccaccag gcataatgga aggccctttc
    17281 agcgcgccct cttcaccacc ggaaacaccg gtaccaatga agttaaagcc ttcagcagaa
    17341 agctcacgat tacgacgaat ggtgtcctgg aagaaggtgt taccaccatc aatgatgatg
    17401 tcacctttat cgaggtatgg cttgagggaa tcaatagcag catccgtgcc tgcacctgct
    17461 ttcaccatta acaggatgcg acgaggcgtt tccagagatt caacaaactc tttcaccgta
    17521 tagtaaggaa ccagtttttt gcctggattt tcggcaatca cttcttccgt cttttcacgg
    17581 gaacggttga aaatagagac ggtataacca cggctttcga tattgagcgc aaggttgcgc
    17641 cccatcactg ccataccgac gactccgatc tgttgctttg acattgttta ctcctgtcag
    17701 ggggtgttca ccacgggttt gcgcggcttg aatcaagttt gaagagtacc ttataacctc
    17761 aactttacct acctgaaata tctatatgtt cttaatattc ttactccatt tttacaaaag
    17821 ctgctcatac tgttcacgaa ttctattcca tgtgtaatgt ttttcagcca gcgacttcaa
    17881 cttaacacct tgtgttctct ctttgggtga ttctatttta attataagat ccttcaggtc
    17941 tctgaaataa cacgcttgtt caaatgttgt ataacgatta tacttacaat caaaacaaat
    18001 aatcggcttt gcaaaaaaca tcatttcaac tagtgatgga ttagtacctc cagcagaatg
    18061 tccatgcaca tagaactcac atccgcttct aataatattt aattgttcaa catcataaat
    18121 tggatcaata atttctatat tattgtactt tgaatatttt ttcttaagac tacgcccata
    18181 gtcgctactt ccccaattac caataaactt caattttttg gtgactttag aaaaagattc
    18241 taatataaca tgaacattgt tttctggctc aatacgacag agagcaagag catatttact
    18301 ttcggaattc tccacatcgt tacatctttt tgtttcaaaa actagtgaat gatctccgcc
    18361 gtaggcaatt acttgagaat ttaccatata ttctgagcac acatagtttg cgatttcctt
    18421 attatcagaa atcacaatat tagaattttt cacagctatt ttttcagacc attttaaaaa
    18481 ttttttagca aacctacccc atttatctcg acgccattct actccatcaa tgtttgtaat
    18541 tattttaaca gatgatattt tttttattat aggaagaata aagcaaccag agactcctaa
    18601 aataaggagt gtatttactt ttcggaatac aatcgcatgc aatatgctaa atgcgtcata
    18661 aataacactt gatattccat tagcgctaag aggaatataa accaatttcg catttttata
    18721 tgtgcttagt tttttggggt aattttttga tgagcaataa acaatataat taaccttttc
    18781 agtttcaatt aaattttcaa caagtgtttc aaaccctcca tacgaagcag gaacacctac
    18841 agtaccaata atggcggtat tactcatatg tttgttcatt tttttcataa atactacttg
    18901 atttattatt cacagttaca catttcatta atacaagaat tagaaatacg ggttcaaaaa
    18961 atagattatt aaggagtgcc aaggtgaaac ttacaagaat aagaagtaag catatattta
    19021 tttcatctac tgaaacaaaa ttatggtttc gtcttttctt taagttttta gagagagaaa
    19081 taaacatgta actccaagta gcgatatata aaacaagagc tataagacca ctctgatgca
    19141 aaagatataa ataaccatta tcgacgtaaa aattcatatc atcttcccct aacccctgca
    19201 ctaaaccgga accaaataat aaacgagaga cgtcattaat attcaaaacc tgaagccagg
    19261 catctatacg agagaataat gtactcaatt ttgtaaaagc tgaataatct atagaagaat
    19321 atgaattctg aatgtcacca ccaaagtata atataaaact tggtgctatg aacaatattc
    19381 caatcaaaaa aacataatat aaattcgcaa gagttagata gtatcgacga aggtaagtat
    19441 gaatcattat aaataaagat gtaactgcaa atgccaacat cccgtttcta ttatatgtca
    19501 aaacaaccat tatgacaaaa ccaacaaata gaaaagcaaa ctttatacga ttgacagatt
    19561 tattaaaata ataataaatt attgcaaagc aacaataact agctaagata aacccagatg
    19621 aaaatatccc actaaaacga agagtaatac cttcttcact tgtttgaaat ggattaatta
    19681 ttaaaccatg attgtataat tgcgaataaa actcttcaac cattttagag tcatacatca
    19741 cacataaccc aaatattaaa agtgataaaa aggtaagctt tgttattata ttaatcaaag
    19801 agtcaaaaat atccaatttc aactttcccg aaccggctaa acaaatgatt ataattggaa
    19861 aaatatattg tatcgttact gcaagcatta attgtaattg tgtataaaca ttattaacaa
    19921 cgatgttatt tacaagaaac aaaattgcag atatggaaaa gaaaaatata aaacatgccc
    19981 cttgagcttt catttttatt gttctgttaa ttaacagata aaacagagag gctaatatta
    20041 atagaggaat aaacacataa ttaagattaa tatttatata caatgatata gccttaatta
    20101 atccagacaa taaaaaaaac agcaataaca actttggtgc ccaagctagc ataaattaat
    20161 tcctcttgtt attatatcta gccttaaagt aactatcaat tttcttgaaa tttatatcga
    20221 gatctagttg tattctgact tttttactac tttcaatagc aaaaagattt agttcttcat
    20281 ccttttgtga aagcttcata atagcaacca tgaaggaatt tagcgttctt tccttgagaa
    20341 caaagccagt cacttcattt ttgataaatt gttctacgcc accatttctc gttgtaacta
    20401 ctattgcccc actaaaagat gcctctgctg cagtcaaacc aaatccttca tatatactac
    20461 tgcaaatgaa gtatctattc tcattatata aattatttag ctgtttaact gtgggttgat
    20521 atacgtaatg aataaacgaa gggaaatttt ctggttttgt ataagcacta aagcaactga
    20581 atttaattga gctatcaact tcgtgaattt tttgtattgc tcttaataag agatcacaac
    20641 cctttctttc actaggatga tatagaaata aaaatgaagc tctatccctt tcattccatg
    20701 gaatgttaac aaaaaaatca tttttgttta ttccattgta caaggtgaga gaaacatccc
    20761 ctcccatttt tgtaatcttt ttcaccaagt catcagaaat agttatataa tcaacatctt
    20821 tatgtgaaag tgtatagttt aaaatattct caggaatatt ccagttttca taatcctgta
    20881 caaaatatac taatttttta tggttaactc tacatgacga attggcgtat ataaacgtct
    20941 caacagagga gcaaatgaca atattaaaat tttcgatatc tctttttttt agagatttaa
    21001 tcacataatg atttatatta gaggatgtaa aatcaaacca tttgtagaac tttaataatg
    21061 aaaataattt tgcttttatt ttacccacaa ggccagaaaa tcgattataa caaacaatac
    21121 ggttcgtcaa ataaataaaa tcaatctgcc atccaacaga tgccaaatag tttccatatt
    21181 gatacaagac tttatatcca ccaacaggct cccttcttgg tcctggtagt aaaatagcta
    21241 tttttttcat ttagacctta aatttataac cacatttttt agccaacata tacatacata
    21301 tcaaaattga taattgtatg cataaggatg ttaatattgt gccatgcagg tgatacagtt
    21361 tactaaatac aggcatggct ataatattta aaataccatt gattgcaata attttagtga
    21421 agcttttgtc tttcccataa ttcaatccaa tttgtgtacc aaagagattg ttttggaata
    21481 cgaagaatac attaaataac aacaataata atacagagta taattcttgt gatattgttg
    21541 gaaaaataag ctgtatgaga taatagccta taaaaacata caacgtgtaa cataacagaa
    21601 aaacaattaa actaaataat gatattcgag aaatcattat aaatactctt tgtttattat
    21661 tttcaattaa tgatgaaata tgtggaaaaa taacgtttag aataggcgtt gttgtaatcg
    21721 ataacacctt cacgattctt tcagcagttg aaaagacaac gaaactttta ggttccaaca
    21781 ccaaaggtag aaagaaaata ttggcataag aaatcaatgt cacactagct tgagatagga
    21841 atatatacca ccctttaact aaaaatatcc atacatttct gagcaaatta gtacgtttaa
    21901 aagctactac attcaacttc ctcctaatat gtatcatcat tagtatgttt gatgcataat
    21961 ttgctattgc acataaaaat agataaaccc aagcatcatt atcattattg accaaaataa
    22021 aaacgaaggg ataaacaata agcttaggaa gtaagccata gaacgtaatt aacttaaaat
    22081 caccacatcc ttgcaaatac caatttgatt gaaatacaaa gcttagcatc caaaaaaaac
    22141 atagcaacca ataaaggagg tcgggtttag tcaatgccat caacgacaca agcaaaaaga
    22201 atgagcaaaa tataaaaata cagagccgtg acaatatgga aatataaaga aaactcttac
    22261 attttcttag atgctttaca ttattactaa tatatctaac accaaacaga tccagcccat
    22321 aattaattaa aacagcaaaa aataatacta atgattgaat aacaacaaaa tctttataga
    22381 ccgcaataga gagtttattg attaagaaag gaattataag aaagggtaga atataattcc
    22441 caaactggta aataaattga ttaactattt tttttaccac attctttcct tcgaataata
    22501 tcttcgataa ttttattaac ttttatttca aataaccatt ctttttgtat gctggcttta
    22561 atgctttccg aattatttga gacaattaat tcatttattt tctcatataa caaatctctt
    22621 tttgagtatt ctagataatt aacaaaccat cgactcttaa tttcaaaatt catagatgat
    22681 aaacatggaa tgccatattt aaagtactca tacattttca atggtgattc atcatgcgat
    22741 ttttctggca gatatggcaa taatccgact ttaaaagatt tcattattga aggaagatca
    22801 gagtatttaa atgcccccgc tatttttata ttttcattca gcttatcacg tatagaatca
    22861 tcaaaaaatt ttccccaaat gatgatactg aatttttttg ataatttatt taaaaaatca
    22921 atatctaatt tatcagtaac gaagccaaca aatcctaatt gatatacctt atttggagtt
    22981 ccatctataa aacattcatg attttggttt tcaagataaa caccatttgg cattacatac
    23041 ttattaggat ttagaaaatt ttttatcgct ttgtcggaaa cagctgtaat tatatcagca
    23101 ttttcgtcta cataagcata tttatctcga acagcttttt tttctttttc agaaaatcta
    23161 ttatgaattg aaaaattatc tattaaatca taccaatatg ttattcgttt attgttcttg
    23221 aattctaatt cggctatagg ggtaaaatca atgatgattg aatcatctgt aaataacgat
    23281 gatattctat ttaatatctt cttgtaacaa tatttcgtcc atatgcggcc aaataacggt
    23341 ccgattaaat cataacttgt atggtcaata aaagttatcc tattactata tgctttatac
    23401 tcactttttg ctttcttctt attttttaat ctttcatata tcgacacagg tctatttata
    23461 aatgtaacat gatactttct agatagaatt tctgcaattt gtaaatctct aacagatgtc
    23521 ccatattcat tccaaaaata cgcatctcta tagccaataa taataaactt catgatttac
    23581 cgctcttata atgcttaccg ctaaaatatg cttttgcaaa atatattaaa cttatatcac
    23641 ttttattaaa aatcaacttc gcaagaagtt tttttgcgac agtaaaaaac gtaaatttac
    23701 agaaataata tcttaatgtt aatccttgat cataacttct ttctttaatt ctaaattgct
    23761 ttacttttat agcttcattt tctagtctag acaatgaatg caatacaacg cactcactga
    23821 tttttataaa ctcactttcc ccaattttat tcagccgtag aaaaaaagtt gaatcaacac
    23881 cataaaaata aaacctagaa tcaaaaacat caccaaatac ttgtcgaagt ttctcacata
    23941 attttttaga tatacaaatt ccactcccaa tagcaagcac tgtatttccc ttgttaaacg
    24001 attgaatgct atatgtttta ggactttgaa tattgtttcc tactattata ttaggaatga
    24061 tacaatcaga tgtagaatta agacattcca aaacataatc atatttcaat atggaatcat
    24121 gatctagtaa aatatatttt tctgactcca cctcattaat aaataaatta tatatataac
    24181 ttaatgattc attatttatt gtttgacaaa cttttaaggt atagtaatct gtagtcagat
    24241 taaatgcgat ttctcttggg ccattattcc aaagacacag aataatatca tcctttgaca
    24301 tcctattttt ttttagaact ctatctatat gagtaaatgt ttcacactgt tctacttctt
    24361 ttccataaag tacaattaag atagctaact tataataatt agtattctcc attccatttc
    24421 tccaacgcta tcatttcttt aaacatcttt tgtttttcat cttttataga taaaatcggt
    24481 ttatggatac ttaaaggcca ctttacgtca atgtcaggat catcccaaat aatccctcta
    24541 tcactctctg gatgataata attggtcgtt ttatataaaa actccgccgt ctcactcagc
    24601 accaaaaacc catgtgctaa tccttcaggt atccacaact ggcgcttatt ctcagcagat
    24661 aaattcaccc caacccattt gccaaaagtt ggtgacgatt tacgaatatc aaccgctacg
    24721 tcaaaaacct caccaacagc gcaacgtacc aatttccctt gcgcatacgg ttctaactga
    24781 taatgcagcc cgcgtaaaac acctttacta gacttcgaat ggttatcttg gacaaattca
    24841 actttgcggc ctacagcttc ttcaaatact ttctggttaa agctttcaaa aaagaagccg
    24901 cgctcatcgc caaaaacttt tggttcaaaa atcagcacat cagaaatttc tgttttaatt
    24961 acgttcattt aattaataac ctttaatcat tttcagcaga tactgaccat aagcattttt
    25021 tttcagcggt tcagctaata ctttcacctg ctcagcagca ataaatcctt tacggtaagc
    25081 aatttcttct gggcaggaaa cctttagtcc ctggcgctct tcaatggtgg caatgaagtt
    25141 gcttgcctca atcaggcttt gatgtgtccc cgtgtccagc catgcataac cacggcccat
    25201 catggcaaca gataaacgcc cctgttccat ataaatacgg ttaatatcgg taatttctag
    25261 ttcaccacgg gaagaaggct taaggttttt cgccatttcg acaacgtcgt tgtcatagaa
    25321 ataaagcccg gttaccgcat aattactttt tggttgtaac ggtttttctt ccaggcttat
    25381 tgccgtaccg tttttatcaa actcaacgac accgtagcgt tcaggatcat ttacgtgata
    25441 agcaaatact gttgcaccac tttctttgtt aacagctacg tccattaact tcggcagatc
    25501 gtggccgtag aagatattat caccaagaac caaagcacaa tcatcaccac cgataaactc
    25561 ttcaccgata ataaacgcct gcgcaagccc atctggagtc ggttgcactt tgtactgaag
    25621 atttagcccc cactggctcc cgtcacccag cagttgttga aaacgaggag tatcctgtgg
    25681 cgtactgata atcagaatat cgcgaatacc cgctaacatc agtgtagaga gcggataata
    25741 gatcatcggt ttatcataaa tcggtaatag ctgtttactg acagccatag ttacaggata
    25801 aagacgagta ccagaaccgc ccgctaaaat aataccttta cgcgttttca tttcatcatt
    25861 ccttttaatt catcttgctc caccatcacg aacaagatgc aaaaactatt aaatagctgt
    25921 agtcgtaaat aattcgttga gcatgcgttt cacgccaatc tgccagtcag gcaagacaag
    25981 cgcaaagttc tgctgaaatt tttctgtatc aaggcgagag ttatgcggac gacgagctgg
    26041 tgtaggatag gctgttgttg gtactgcgtt gagcttgttg agtgcaaggg gaatgcctgc
    26101 tttgcgcgcc tcttcaaaaa ccagcgcagc ataatcgtgc cacgttgtgg taccactagc
    26161 taccagatgg tacaagcctg cgacttccgg tttattcagt gccacacgaa tggcatgtgc
    26221 cgtacaatca gccagtaact ctgcgccagt tggcgcacca aactgatcgt taataacagc
    26281 taattcttca cgctcttttg ccagacgcaa catcgttttg gcgaagttat ttcctttacc
    26341 tgcatagacc cagctggtcc ggaaaataag atgcttcgca caatgctctt gtaatgcttt
    26401 ttccccggct aacttggttt caccataaac gttcagcggt gcggttgcat ccgcctcctg
    26461 ccatggtatt tcaccggttc ccggaaatac gtagtcagta gagtagtgaa taacccatgc
    26521 accgacctca ttggctgctt ttgcaatcgc ttcaacactt gtcgcattga gtaattgtgc
    26581 aaattcgggt tctgactcag ccttatctac cgcggtatga gcagccgcat taacaataac
    26641 atcagggcga atttttttga cagtttcagc tacaccttca gaattactaa aatcaccaca
    26701 ataatcagtg gagtgaacat caagagcaat caaattaccc agaggtgcca gagcacgctg
    26761 tagttcccaa cctacctgcc ctgttttgcc aaaaaggagg atattcatta ctggcggccc
    26821 tcatagttct cttcaatcca cgattgatag gcaccacttt tcacattatc aacccatttt
    26881 gtattggaca ggtaccattc cactgtcttc cgaatcccgc tctcaaacgt ttcctgtggt
    26941 ttccatccca attcgcgacc aatcttctca gcatcaatcg cataacggcg atcgtgtccc
    27001 ggacgatcgg caatataagt gatttgctca cgataagatt tctctttcgg tacaatctca
    27061 tccagcaaat cacaaatagt gagcactaca tctatgtttt tcttttcgtt gtgcccacca
    27121 atgttataag tttcacccgc tttaccttcg gttacgacgg tatataacgc acgcgcatga
    27181 tcttcaacat acagccagtc gcgaatttga tcccctttac cataaatagg taatgcttta
    27241 ccttccagag cattgagaat aaccaatgga atcaattttt ccgggaaatg ataaggacca
    27301 taattgttag agcaattagt cacaatggtc ggtaaaccat aggtacgttt ccacgcgcgg
    27361 actaaatgat cgctggatgc tttggatgcg gaataaggac tgcttggcgc gtaagctgtc
    27421 gtctcagtaa ataagggtaa ttcttctgta ttatttactt catctggatg aggcaaatca
    27481 ccatagactt cgtcagtaga aatatgatga agacggaagc tatttttctt gtcgctatca
    27541 agagcagacc agtaattgcg agcggcttcc aaaaggacat aagtaccaac aatattggtt
    27601 tcaataaatg ccgcagggcc tgtaattgaa cggtcaacat ggctttcagc agccaagtgc
    27661 atcactgcat ccggctgatg ctgagcaaaa atccgtgcca ttacagctgc atcgcaaata
    27721 tccgcatgtt caaaaacata gcgttcagaa tcagaaacat cagcaagtga ttccaggttt
    27781 ccggcgtacg ttaatttatc gacattaaca acactatcct gcgtattatt tataatgtga
    27841 cgaactacag cagaaccaat aaatcctgcg ccaccagtaa caagtatttt cacttaattt
    27901 attccatatt acttcagagc atgctgtgaa ataagcggct ctcagtttga ttaatagagg
    27961 tattaatgca cgctaccgcc cctggcttta cagctaccag agcactgcat gcatgcctac
    28021 gatgtgacga gcgttaccca ctcgcgctaa acccgaaaaa ttcaaacgct aattgtctta
    28081 ccaatccgct ctggaaacaa ggaaaatcct ggaaaacttt gactaaaatc ctattgctaa
    28141 ctcgttgtta tcctgattgt ttatataaaa caacggcagg aatattcgca acaaattact
    28201 ttcgccacga atcttcactg ccgttataat tttcttatca accgttacat ccggtcagat
    28261 tttcattatt cgcttaacag cttctcaatc cctttgcgga acttcgcccc ttctttgagg
    28321 ttgcgcagcc catacttcac gaacgcctgc atataaccca tttttttacc gcaatcgtag
    28381 ctgtcaccag tcatcagcat ggcatcaacg gactgttttt tcgccagttc ggcaatggca
    28441 tcagtcagct gaatacgccc ccatgcacca ggctgagtgt gttcaagttc cggccaaata
    28501 tcggcagaaa gcacataacg gcccacggcc atgatatctg agtccagcgt ctgcggctga
    28561 tccggttttt cgataaattc gacgatgcga ctgactttac cttcgcgatc cagcggttct
    28621 ttggtctgaa tgacagagta ttcagagagg tcacccggca tacgttttgc cagcacctgg
    28681 ctgcgtcctg tttcattgaa gcgcgcaatc atggcagcaa ggttgtagcg cagcgggtcg
    28741 gcgctggcgt cgtcgatcac aacgtctggc agcaccacga caaatggatt gtcaccaatg
    28801 gcaggtcgtg cacataaaat ggagtggccc aaacctaaag gttcgccctg acgcacgttc
    28861 ataatggtca cgcccggtgg acagatggac tgcacttccg caagcagttg acgcttcacg
    28921 cgctgctcaa ggagagattc taattcataa gaggtgtcga agtggttttc gaccgcgttc
    28981 ttggacgcgt gagttaccag gaggatttct ttgatccctg cagccacaat ctcgtcaaca
    29041 atgtactgaa tcattggctt gtcgacgatc ggtagcatct ctttgggaat cgccttagtg
    29101 gcaggcaaca tatgcatccc aagacccgct acaggaataa ctgcttttaa attcgtcatt
    29161 atttcatcca cctgtaaaat ggttgctgaa ttatagcttg ttcgattttt ttcgccagca
    29221 tcaattaccc tgaattgatt actgaattac ttgtgatgtt acgccgcttc gttgtggatt
    29281 gcagtagcat tgttcctaag tatggctcca tttttccagg aatggtcgca aatctactct
    29341 ctccgttccg gcaatctaaa gttaatcttt tccacattaa caatatggtg attaaccctg
    29401 tcgatatcga cggagctttg tcctttctca ttcaccgcat gaacatttgc aagagacagc
    29461 agtgtttctt ttttcgccat aaagacgccg cgaacgtctt tgcgcatgtc gaagttcatg
    29521 ctcaatgcgg gtccaactga ggattcctgc atcacattga tattacgcat aaaaaggtgt
    29581 tgcggtttat tgtatagctc aagcgacgca cgcttcatct caatgttagt cagcgccaca
    29641 aaggagacgg cattcccggc ggagatttgg ataccgcgca atttataagc aaggtgggta
    29701 ttatccagtt gaatattatt cactcggaaa ttttgcggta tcgagagata tttgccttta
    29761 attaccccat agccgattaa catcccggcg ctattaatca tttcaatatt atcaatcacg
    29821 aaattgtcac aaccgtaaat agcaactgtc gcgttatcaa tgcctgcttt cttactgaaa
    29881 tccggcgtga tattgcgggc tttgatatta cggataacaa aatgtttgcc attttcaaca
    29941 tggatcaact gccgacaatc cgatcccgtg atattcgcca cgacaaagtt tttcactgcc
    30001 tgatcttccg ggtaattatt atcgtaagtg cttcccgcaa ggcctatgcc aatgccccag
    30061 ttgattttgc cgttggtaca gttgatgcgc tcgatgacat ggtcggagat caaaatatca
    30121 ctgtcgttaa tcgccacgtt ccattcaata gcgtccccct gtaaatcact aaatttacag
    30181 ttggtgatgt tggcaccaat tatctggtta tgaaatccct ggcgtaagat ggcgtaatta
    30241 gcgtggctga cagtgaggtt atcgatggtc aggttgcgca tgacccgttt gtttttgccg
    30301 ccgatataaa tctgcgttac cgggccaaag ccgctcatcg ccagcccttt gatggtgcag
    30361 tcagaaccac gcacatccag ggtgatgtta tgcatactgc cgccctcctc ccctgtcacc
    30421 tggctgccgt cctgtaagac aaatcgccct ctgccgttgc cgcgcaggct tccaaggatg
    30481 tgtaacgttt ttccaggagg aatgaagatg ccggtgttga tattgtcaca aacgaatcca
    30541 gcaggcacga cgaccgtttg cccttcgctg aaggcttgtt taaatgaggc gatccagtcg
    30601 tgagggttgt agtcgttaat gttaacgctt tgtcgggcgg gaagtgcgcg agcgaaaggg
    30661 gtatggagga aggcaagcgc cgagcttgcc gtcaggaagg tgcgtcggga gattttttta
    30721 aatggcatac gttctcctct ataaagcctg caacaagctg gcgagttctc ggttaatcac
    30781 ctgctggtta aaatcgtgtt cgactttttc gcgcgcacgt ttgacaaccg gagccagttc
    30841 gtcggtgtta agttggctaa acgccgccag tcgttgcgcc agtgcgcgag catcgttctc
    30901 aggcaccagc cagccggatt tgtcggcctc caccagttcc ggtattccgc tatgcagagt
    30961 agaaaccacc ggaatgccga ccgccatcgc ttccattagc gccactggaa tgccttccat
    31021 atcaccatcc gcgcccgtta ccgatggcaa caggaagaca tccgcgtcgt cgagcatcgc
    31081 tttcacttca tggctcggtt taaagcccgg catctctacc acatcttcca gttgatattg
    31141 ttcgatgagg gtgcgcaggc gtcgttccca cgggccaatg ccgagaatgc gatagcgaaa
    31201 tgccacgccc tgctctttca actgacggca ggcttcaatc gccacatgca gacctttttt
    31261 ctcggttaag cgtgcgacgg aaataatctc cagcggtgtt gcgggcgctt tcacgggacg
    31321 cgggctaaag cgcgtcatat ctacgcccat gcgcgatacg gcgatttttt ccctcgggca
    31381 gcccattttt tgcagccttc cggcccacaa atcgcttatc ggtaacatca gatcgccacg
    31441 gcgaaacagt tgttgatatt cgggagtgta gtggttgagc acttcccgac tggaaatatc
    31501 aatgccgtgg aaaatggtgg caattttgcc gcgaatgaca cccagttcgc ggagttttgc
    31561 tgcggttacc cccgctggac caaaatgagc gatgaacaca tcggcgcgaa acggtgttgc
    31621 gacctggccg caaatggcag acaaaatcag attccgcgac tctgcgccat agcgtttgag
    31681 gttgagcgcc tgccaggtat ttttacgatg aatgcctcgt aacgtctggc tggcacggtg
    31741 gcgtagcttc gccactttgc ccgtaggttc gtcctgtaac caactggttc ttgcggcaag
    31801 gttgtatttc gtccatgccg cgtgggtgtt ctgggtgtcg cctttttgca gcgcgacaat
    31861 ctccacctca aagcccatat caataaacgc ggtaatttga ttgaggacga aggtttccga
    31921 agacagcgga aatttcagta aaaagaagcc gaccttcatt tcacctcccc gatgcgctca
    31981 agcacagatt gcaccatctg cattcccgtc tgacgctcac gactgacggc ttcgctaagt
    32041 cgtgcgttca gcgccggaag ctggcctaag gtatccgcaa ccatcgcttg caggctgccg
    32101 tctaataaat gacggatatc aattgccatc tccggtagtc ccagctgctg cataatcccg
    32161 gcggatttat gttcatagtt gatggcaatc gccggagtag caaagttcat tgagataatg
    32221 gcggagtgca ggcgcgtacc gacggtgagt tcacaggccc ccagaatttt gcccatttcc
    32281 agatcgttga gttcatccat cactacgtgg taacgggcag gatcgctgat gtgctgacgc
    32341 aagttgagcg ccaccatgcg gtcgtctttg ttatagctgt cgatgcccgt acaggtggag
    32401 agcgcaatca cctgatagcc ttcgtcgaga atgcgattga ccaccccggc aaaggctttt
    32461 tcatacgctt gctgagtggt gccgagacgt ttgtcgaacg gtgccagttc gcgcagggta
    32521 attgccaccg ttttctgttg tgcggcaacg tccagccagt gttgaacggc atagctggca
    32581 gtgaagtctt cggtgtggtg atcgaccagc cacgcagtat cgacgccatg ttccactttt
    32641 gcagtggtga tattgctgcg tttcatcaga tcaaggctga ccgattcgcg caggatcagc
    32701 gcgtcacagt gaccaaaaac gtagttcgcc agttggttaa attgctcatc ctggaaggga
    32761 ccgacgctgt gaccaatcat aaacagcggc tttttcgcca taaacgtgca aagtgcatgt
    32821 tcaaactgcg gcacgccata gagatcgaca aaaaacgatc cgccgacctg gataatggca
    32881 tcgtaacctg acagtaggcg cacgaagtca gtgaatccct gggcgatggc aatattgcgc
    32941 agcttgccag tgtcggtgac gcgcgagagc aatacctggt gttgatagcg gcgacggagg
    33001 acttttttaa cgcgcccgac aacgcccgcc gcgctgttgt gttgtttcat ttgcaggaac
    33061 agcggatcgc ccattaccgg gcggttgagc agccaggaag aactgaccgg atagcggctc
    33121 atcacgtcca cttcggcgtg tggattgagg atgttgatgg catcaagtaa gccacgcaag
    33181 atggcgctgt cgccacgatt gccgcaagtg tggttgccca gaataagtaa tttcattttt
    33241 tcctcataaa tttgatgcca ggtgaggctg cgtttgtttt gttcgttgcc gttttttgcc
    33301 tgatgcgacg ctggcgcgtc ttatcaggcc tacaagaccc gagcacagaa ccgtaggccg
    33361 gataaggcgt tcacgccgca tccggcattc agtgcctgat gcgacgctga cgcgtcttat
    33421 caggcctaca agtcccaagc acagaaccgt aggccggata aggcgttcac gccgcatccg
    33481 gcattcagtg cctgatgcga cgctgacgcg tcttatcagg cctacaggtc ccgagcacag
    33541 aaccgtagga tggataaggc gttttacgct gcacccggca accgttgtcg gaaccgaaaa
    33601 caacaactca ccccgcccgt aaaagcattt tcattttttc gctgcgacaa aactgacgct
    33661 tcacttccac caccagcgga tggcgcgaca gcacaatcat caccacaaac gccagcacgc
    33721 ccgcggctat ttgcaccccc agcagcatcc ccagcgccag ttgccctttc agcacaatgc
    33781 ccagcacata actgaccacc agcgtcggca gcgagagata aaacggcagc cacaaactca
    33841 ggatgtactg gcgataactg gaaccaagaa ccggtttaat catcacgaag taactcagaa
    33901 tggtgttgat aatctgcacc agcaggaaac cgagcgtgac gccgattgcg cccgccatct
    33961 gcccaccaat aacaatcgcc ggaataaaca gaaaggtttt gaatacgttg aatttaaagc
    34021 tgatgtcgac ccgcgctttc gccatcagca gcgaaccaat cgggttaccc acggagcgca
    34081 gcagacccac aatacacagc aattgcagca ccggaataat gctgttccac ttttcgccga
    34141 ataccagcgg tacgaagtta ttcgacacca ccatcagccc cagcagcgct ggaaagttaa
    34201 taatccccac caccgacagc agcttgtaga agttgacgcg cagcttttcg gtgtcgtcct
    34261 gaattttggc gaatgccgga aacaacacac gggtgatgat cgggttcagc ttcatcggcg
    34321 gcacaacggc cacgttgtac gccaggttgt atcccccggc cacgcccgcg ccgagaatac
    34381 gcgccagcac cagcgttgaa aggttggtgt tgagatagtt gatgatgctg tccgccgtca
    34441 gccaggcacc aaagcgtaag ttcggtgcca ccgacaccag cgagaagtgc agaccggggc
    34501 gataaatttt gcggccaaag tagccaaaca gcagcgttct taccgcacta ttgaccagat
    34561 aaccgaggat cgcgatcatc gccagcggcc agaaatgggc gctaaccacc gtaaaagtaa
    34621 agcccgccag caccgcgctg gtttcgatca tgccgatttt gttgaactcg agctccttct
    34681 gcatcaacgc gcggaactgt tgcccgtggg ggatcaccac aaacgccagc gacaatgttt
    34741 taatcaacgg tgccaggtcc gggttattca gcacgtcacc aatgagatca ctcaacaaaa
    34801 acaccgccac gcacaccaca agccccagcc cgacgttcag ccagtacaac gtggtgagtt
    34861 caaggtgact gatttctttt cgctgaataa tcgagttagc gataccgaag tcagaaagcg
    34921 tatctgccag cgcgataatc accagcgaca cggtaagcag gccgaactgg tggttgtcga
    34981 taatccgcgc cagcacggtc atctgcacca gcccgaggcc gatgatgatc accgtggcaa
    35041 tcgccgacca cttcgcgccg ctgatggtct tttcacgtaa gctcatatca atatgccgct
    35101 ttgttaacga agcccttgaa taccgtcagg aaaacgattt tgatatcgaa ccagacgctc
    35161 cattcgcgga tgtactcaag gtcgaactcg acgcgttttt ccattttctc cagcgtgtcg
    35221 gtttcgccgc gccagccatt aatctgcgcc cagccggtaa tgcccggttt cactttgtgg
    35281 cgcagcatgt agccttcaat gagctggcga tactgttcgt tatgcgccac cgcgtgtgga
    35341 cgtggcccga caatcgacat ccccccggtc agcacattga taaactgcgg caattcgtcc
    35401 agcgaggtgc ggcgcagaaa gttccccact ttggtgacgc gcggatcgtt ctgcgtcgcc
    35461 tgagtcacga ctttgtcgtt ctccatcact ttcatcgaac ggaacttcca cactttgatc
    35521 ggcttgccat ccatgccata gcgagtctgg cggaaaataa ccggtcctgg tgaactgagt
    35581 tttaccgcca gcgcaataca gcacagcacc ggggagatca gcagcagaat aagcgtcgcc
    35641 agcacaatat cttccgcacg ttttagcagg cggttaaccc cggaaagcgg cgtatcgtac
    35701 agcggcacca ccggaacgcc gttcatctct tcgagacgtg aatggagaat gttgaaggta
    35761 aagacgtcgg ggatcagcag caccgaacag gtggtgtccg ccagttgatg gaccagtttt
    35821 ttcactcgtg cgccgtcgca catttgcatc gcgatataga cgttatgaat cttgcccgct
    35881 ttcgcatcct cgaccagctg ttgcagattg cccgcccagt cgttagaaac gccacccggt
    35941 ttcgggtcgt ggtaaacgcc caccacttca aaccctaacc acggctgatt acggaagctc
    36001 tccatcagca tttgtccggc ggctaaatct cccgctacgg cgaccatacg cttgttatag
    36061 ccatgattac gcagccagcc cgccccaatg cgaatacatg aacggcaaac caccagtccg
    36121 atactggtca gccagatttt cagttgcgtg tcgaaatcat tattgaacgc caccagtccg
    36181 gcgctgaaaa tcacgcttaa ggtccagttt tgtagcaaca gggcaaattc tgtcgctgcc
    36241 cgaacaccgc gccatgagcg ataaaaatcg gtgatgccgc ccagcatctg gaacaccacc
    36301 agcgtaatca acgccaccaa caggtgcatg tagaggaatg acagtccgct cacttcgcaa
    36361 accagccata gtccggcaaa catgatggtg atatctgaaa agcgttgcac catagagatt
    36421 aacgatgcat tggttttcgc tcgctcgcgc ttttttagat ttgtcatcgt tgttcctgtt
    36481 attagcccct tacccgcagt ggggtaaggg aagatccgac attactcatt cagcaacgtc
    36541 agcagagttc gcgttcgcgc ttccatcagc ggcacatcac cgcgcgattc cacattcaac
    36601 cgcaccaccg gttcggtgtt ggaggtgcgc aggttaaagc gccagtcggc aaaggtcatg
    36661 ctgatgccat cggtacgatc caccgccagc gcctcacggc taaaatgctg ttcgacgcga
    36721 ttaatcgcct caacgggttg cgccagtttg ctgttgatct caccgcttgc cggaaacgcc
    36781 gccatccggt cgcgcaccag ttcgcccagc gtttttcctt tcaggcacaa cagttcggcg
    36841 accagcagcc acgggatcat gccgctgtcg cagtaagcga aatcacggaa gtaatggtga
    36901 gcgctcattt cgccaccgta gatggcgtct tccttgcgca tccgttcttt aataaaggcg
    36961 tgtccggttt tcgacattac cggggtgccg cctgcggcag tcaccacatc aatagtgttc
    37021 caggagagac gcggatcatg gatgatcttc gcgccgggat ttttttcgag gaacgcttct
    37081 gccagcaggc cgacaatgta gtagccctcg ataaactgcc ctttttcgtc aaacagaaaa
    37141 cagcggtcaa aatcgccatc aaaggcaatg cccatatccg cgccgtgttt gatgaccgca
    37201 ttgcgggtgt cgtcgcggca ttcaggcagc agcgggttag gaataccgtt ggggaaattg
    37261 ccgtcgggcg tgttgtgcac tttgatcaat tccacgggcg cgccgagggt tttaaagcgg
    37321 gcttcaatgg cgtccaccac cggacccgct gcgccattcc cggagttaat caccagcttg
    37381 agcggcgtga ggtttttgac attgatataa ccgaacaggt gatcaacgta agcgtcacgc
    37441 aggttgattt gctgatagcg accgcgtttg gtttcatcga cgggaggaaa gtcgttggct
    37501 tctgccagac gctggacgtc gcgcagtccg gtatcaccgc tgattgggcg agccccttcg
    37561 cgcaccagtt tcatgccgtt ataatccatc ggattatggc tggcggtaac ttcaatgccg
    37621 ccatccacgc cgagatggaa cgtggcgaaa tagatctctt cggtgccgga catgccaata
    37681 tccagcacat cgacgcccgc atcctgtaaa cctttcgcca gcgccagttt taaggtttcg
    37741 ctggtgagac ggacatcacc gcctaacaca atggttttcg gtttgagaaa ttcgccatag
    37801 gcgcgaccaa tgcgccaggc gatatcttca ttcagttctt cgcctaattt cccgcgaata
    37861 tcataggctt taaagcaggt taattttttc atgtcgttac cctttttcag gcaatagttg
    37921 gccctgaccg aaacggccaa ttttgttttt gtcgttattt acatctcggt ttcgcattca
    37981 ttgcctgatg cgacgctgcc gcgtcttatc aggcctacaa atccgaaccg taggtcggat
    38041 aaggcgttca cgccgcatcc gacaaacagc gcctgatgcg acgtttacac ccgtccgtag
    38101 cgatccgcga agcgcaccac atcatcctct tcgagataag agccggagcg cacttcaatt
    38161 aaatcgagcg gaattttccc cgggttttcc aggcaatgcg tcgcccccag cggaatataa
    38221 atggactcgt tttcaccaag cagtttgata tcaccgtcga tagtgacttt tgccgttcct
    38281 gcgacaacca cccagtgttc cgcgcggtga tgatgcatct gtaccgacaa gccttcgccc
    38341 ggtttcacgg tgatgcgttt cacctggtag cggtcgcccg cgtcgataga gtcatatttg
    38401 ccccacggac gatacacttc gcgatgcacc cgatgctcat ggcgaccatc ggctttgatc
    38461 tgctcgacca cttttttcac atcctgcacc gcgttacggt cggcaatcag cactgcatct
    38521 ttggtctgca ctaccaccaa atctttcacc ccgacggtgg tgaccaggcc agattcggca
    38581 tacacatagc tgttttcagt tttgtgatta atcacatcgc cgtggcaaac attgccctcg
    38641 gcggtgtggg cgctgatctc ccataatgaa gaccaagaac cgacatcgct ccagcccgca
    38701 tccatcggca ccacaacagc atctgccgta cgttccatga ccgcgtaatc caccgactct
    38761 tccgggcagg ggagaaacgc ttcttcatcc acgcgaataa aatcgagatc cggatcgacg
    38821 gcgctcatcg ctttttcaca ggcatcgaga atatccgggc gatatttttt cagttcttcg
    38881 agatagcgtc cggcgcggaa caggaacatg ccgctgttcc agtaatattc gccacttgcc
    38941 acataggcct gagcggtttc cagattcggt ttttcgacaa actgcgccac ttcaaaggcc
    39001 accgtatcct gctcacccgc agacacttca ccgcgacgaa tatagccata accgatttca
    39061 ggtagatccg gcacaatgcc aaaggtcacc agcttgcccg cttcggcata cggtatggca
    39121 ttacgcacgg cggcacggaa cgcgtcttca tcggcaatca catgatccgc cgccagcacc
    39181 agcattaacg ggtcgctctc cggactatga cgtgttgccg ccagcgccgc cagcgcaatg
    39241 gctggtgcag tgttacgccc tgccggttcg agaataatgt tctcggtgag tttgttcagt
    39301 tggcgcagct gttccgcgac aataaagcgg tgctgctcat tgcaaatcac caccgggctt
    39361 tcgcactcta cgcctttcag gcggcagatg gtggtttgca gcatggtgag atcgcctttc
    39421 aggcataaaa actgcttggg gtaaagtacg cgggaaagcg gccataagcg gctaccggag
    39481 ccacctgcca tcacaactgg atagagtttc gactgcgcca taattatccc cgaatatcat
    39541 ttataaattg acgtaacacg ttctctttat cgagcgtgcg ttcggcatat tcacgtgcca
    39601 ccgtgttgtg tttgggcagc aggagcgcct gacgaatccc cgccaccagc gcctcgaccg
    39661 attccggttc aacgcaaacc gcaatgcccg gaaaggtttc gcaaagctgt cccagttctg
    39721 tgtgggcttc tgcagtaatc accgcgttac cgcctaccgc cagaatattg gtcagtttcg
    39781 acggcaatac ggcatctgcc gcgccgcgtt tttgcaccac cagatggcaa tcgcccatct
    39841 tcagcagtgc gggtaaagcg tcatacgatt gcagcggaaa aaattgcatg ttgcgcagac
    39901 cacgctgttg cgccattttt tccagccgcg ctttgccgcc gccctgcccg acaatggcaa
    39961 aaatcagcgg ttcatcacgc aggcgatcgg cagcttcaat aacgttttcc agcccctgct
    40021 tttcaccaat attgccggag taaagaatga tttttttgtt atccggcagg ccaagctggt
    40081 tacgaagggc atcaacatcg acatctgcga catgctgaaa acgggcaatt tctgaccagt
    40141 tggggaagaa gatgacgttt tctgccgcca cgcctttttc gatggcttta ttcatcatcg
    40201 aacgcgaaat cgtggagacg ttatcgacgt tatgcagtcc gctacgttcg aacgccgttg
    40261 ccagctgtgc cactttgccg cctttgcctt ttccggcaag gcccagcccc agcatggcgt
    40321 ccacttcgta atcctgaata tgcagcacgg tacgcgcgcc agagagtttc gccagcaggc
    40381 gcattcccgg cgtgcaaaac agcgttggca ctacgccgat aatgcgatcc ggcttccagc
    40441 gacgttgcgc catcaacggg aaaaaactgc tgacggcaaa actgccgaga tgcaacaggc
    40501 gtttcagggt gctcggctgt tttggcacgt acagcgggca gcgccacacc gtagcggccc
    40561 cctcttctcg tttgtaccgc caggcggaat agttctcgcc cacctgccac tgcgggtagt
    40621 aaggcggtgc ggtaataacc cgcacctcat gaccttgcgc cgccagccat tcaaccatct
    40681 ctccggtgta tttgccgatg ccggttaact ccggcgagta gttaatgccg tagaccagta
    40741 ttttcataat ccgggtactc cggcacgctt ctcagcgaga aaataggcgc ggctgttagc
    40801 gtgaacatcg ttactggcga gcagcgcgtc cggcgtcagc cagcggtaat cgtcatgctg
    40861 ctcatccggc agtaacagat cttcttcagc gactctgaag cgaaaaccga gcaccacata
    40921 gtgagtggtg aaatccgtgc cggagaagtt atcgtcataa aagtgctgcc agacaccgta
    40981 aaactggcct gctgttatcg gtagacgcag ccccagttcc gccatcgtca gccgctcaaa
    41041 tgcggcttcc agcatttcgt ctttctgcac gcgccctccc ggcacaaacc agtaaccctg
    41101 cgccgggcgg ttggttcttt tgccaagcag aaactcgccg cgactgttct cgacaataaa
    41161 atcgagagag acaagcggag tggagcgcac taccgtggca aagtcttcct gacgtaaaaa
    41221 catcattacc cccgaaagcg gtcttgattc tcaaggaacc actggtaagt gctggcaagc
    41281 cccgcttcca gtgagatttc gtgataccag ccaagctgat gcaggcgcgt cacatccagc
    41341 agtttgcgcg gcgtaccatc cggcttgcta gcatcaaaaa ccacccgacc tttgtaaccc
    41401 accactttgg cgatggtttg cgccagctcg cggatagtgc agtcaacgcc cgtgccgacg
    41461 ttaatgtgtg acagcatcgg ctgggtgttt tccagccaga cttcgtgcgc cagctccatc
    41521 acatgaatgc tcgccgccgc catatcatcg acgtgcagaa attcacgcat cggtgtaccg
    41581 ctgccccaca ccaccacgtc cggcgcattc tgtgccgtcg cctcgtggaa gcgacgcagc
    41641 aatgctggga tcacatgcga gttactcgga tggaagttgt cgtgtggccc gtacaggttg
    41701 gtcggcatga ccgagcggta atcgcgtcca tactggcggt tgtaagattc gcacagtttg
    41761 atcccggcga ttttggcaat ggcgtaaggc tcgttggtcg gctccagcgt accctgcaat
    41821 aactcgcttc ctgccatcgg ctgttttgcc agtttcgggt agatacagga cgatccgaga
    41881 aacagcagtt tgttcacgtc gttctgatgc gcggcgtgaa tgatgttgct ctcaatcatc
    41941 atgttctggt agatgaaatc cgccggatac gtgttgttgg caacaatgcc gcccactttc
    42001 gccgccgcca gatagacctg gtcaatgctt tcgctggcaa agaaatcatg cacagcgcgg
    42061 ctgtccagca ggttcagctc gtcgcgggtg cgtaatacca gttccacatc accgcgctgt
    42121 tcgagctgcc gcctgatggc agaaccgacc atcccgcgat ggccagcgat aaaaatgcgt
    42181 tgtttactca tgcttatgac tccagcgcga tcgccacgtc gtagccgtga gatttcagca
    42241 gagagtgttt tttcgccgct tcgaggtcat tagccaccat ttcagacacc atctctctga
    42301 gggtgatttc cggtttccag cccagttttt cgtgcgcttt ggtcgggtcg ccgagcagcg
    42361 tttcaacttc tgccggacgg aagtaacgcg ggtcaacggc gataatcaca tcacccggtt
    42421 taacgcccgg cgcgtcatgc ccggtgacgg aaaccacaat gcccttctct tcaacacccg
    42481 tgccttcaaa gcgcagtttg atgcccagct gtgctgccgc catttccacg aactgacgca
    42541 cggagtactg aacgccggtc gcgataacga aatcttccgg ctgttcctgc tgcagcatca
    42601 tccactgcat ttttacgtag tctttggcgt ggccccagtc acgcagggaa tccatattgc
    42661 cgaggtacag gcacgactcc agcccctggg cgatgttggc gattgcgcgg gtgattttgc
    42721 gggtaacgaa ggtttcgccg cggcgcgggg attcatggtt gaagagaatt ccgttacagg
    42781 cgtacatgcc gtaggattca cggtagttaa cggtgatcca gtaggcgtac agtttggcga
    42841 ccgcatacgg agatcgcggg tagaacggcg tggtctcttt ctgcggaatt tcctgcacca
    42901 gaccatacag ttcagaggtg gaagcctgat agaaacgagt tttcttttcc agaccgagga
    42961 agcggatcgc ctccagcagg cgcagcgtac ccatcgcgtc gacgtcagcg gtatattctg
    43021 gtgactcaaa agagaccgca acgtggctca ttgcgcccag gttgtacact tcatccggct
    43081 gtacttcacg caaaatgcgc gtcaggttag aggtatcact caggtcgcca taatgcagat
    43141 ggaatttcgg gttgcaggtg tgcggatcct gataaatgtg atccacgcgc tcggtgttga
    43201 atgacgatgc gcgacgctta ataccatgca cctcgtaacc tttttccagc agaaactctg
    43261 ccaggtaaga accgtcttgt ccggttacac cggtgatgag agcgactttt gacatgtatt
    43321 attcctctgt atttttgaat ttattcagtt tcaacgcgtt cgcgtatcac cactgcggga
    43381 ttcccccggc aaaccacatt tgccggaagc gatttaaaaa cactgcttcg tgcacccacg
    43441 acggtgccgt cgccgattgt gacgcctggg gcaacaaaga catcggttgc cagccagcat
    43501 ttctcgccaa tcacaatagg cgtggcgtta atggtgaaat gttgacttgc atggtcgtgg
    43561 ctaccggtgc ataaataact tttttgcgat atcaccgaat gtgcgccaat ggttatttca
    43621 ccgagggtat ataaattgac gtcatcgccg acccacgcgt aatcacctaa ggttaatttc
    43681 cacggatagg taatttttac tgacggacga ataactacgt tttttcctat ttttgctccg
    43741 aataaacgta ataaaaaagc ccgccagcga tacaatactt gtggcgacca ggcaaatatt
    43801 gttgcctgta ctgcccacca taattgcact ttaatagcgt tgccgccccg gaaccctttc
    43861 ggcaccgaga aaccgcttaa atcttgcatt ggttttcctt atattcagac tttgttatat
    43921 aaggctttcg tctttgaggt agtacgttgg cgtaaatgcc aggataattc agcccaaaag
    43981 ccaggcacat gtaatatttg tcgttggact tttttcgcgt cagcacacaa ttccatatta
    44041 ttggtggtag ataccccacc catggaaaat tcagacacca ggccattgag ttttttaaat
    44101 gcataaccgg ctttatacat tttggctgcc agcgcgtagt cggaagaaac tttatattcc
    44161 aggtcataac gccatttttt caagccggat acagggaaaa atatcgcctg atgactggcg
    44221 ggcaggctgt gataaatata ccagcccggt ttggcgctac gtttaatttt atgcccgtcg
    44281 ccaaaatcca gcagcgcatc gccggtgatc atcacgttat ctttttgcat ttttaactta
    44341 cggacaaaat ttgcggcatt ctgatgaaaa atatcgcccg aattgagaaa caacgcgaac
    44401 ttgccttgtg ccatcgcaat gcctttgttc atggcgtcgt agataccgtt atctggctcg
    44461 ctgacaaagc gtaggttaaa gataccattg agattttcca gatactcacg ggtgccgtcg
    44521 ttggaaccgc catcgacaac aatccattcg aagctgatat cttccacctg cgccagatgc
    44581 gccagcgagg catgtgtttt gactatccct tcgaggttac gaaacgcgac agtgattatg
    44641 ctaagcaaca tgttcttatt cttacctcgt aatatttaac gcttttcgca aaataaacgg
    44701 acagacgatt aaaaatgcat attccgggct aaatatcgaa ccggtaaaaa acagcgatac
    44761 cggagtaaaa agatataatt gcacgcgaaa attgtggtta tcaccaaaag cgttgatcat
    44821 catttttatc actttcccca tgtaccacag tgataaaaac accgcgaacc aggaaaaata
    44881 aataatcagc agatacaaac cattgtctat ggtttttccg acatccgcac cgttaaatat
    44941 tccgaatgat gcgacatatt cataaagtga gccaaatctg actacaccgt caatatgggt
    45001 caaagaataa ccgaccatca ccagcggacc gacaatacga taatatgatg acgatccttc
    45061 cgtacctaaa tcgcccagac gggtggaaat ataaggaaac gcgattacca caccaaccag
    45121 gaatacagcc agagaaatca atgctaacgg taactttttc ttaatcgcct ctttattcag
    45181 atattgaaat gcccactcca gcaaataaaa caggataaag gtcataaccc ctgaaaacga
    45241 tccggataat attatccctg cgagaatcat agcatctgtt ttaggcgttt tgataccaaa
    45301 ctgtttgatg ctgagccaaa ttgagattaa tgccagagcg aaaaatgccg gttcgaaata
    45361 aagtgctgtc gtgcgcttgc cgccgaattt aatgaaattc agcacatagc tgttgctgta
    45421 aatcagatat ttcgaaatcg actccataat actgctgcca ccggtgagga taatttgtgc
    45481 catctccacc gccgccagcg ccaccaccag cccgaccacc agataaaaga aacgtaatat
    45541 cttgcgatgg ttgtgtggcg aaattgtttt aaaacgaata ctccacacca tgccaataat
    45601 gatcacaata tagacaaaca gcatagttga agtgacgtat ttactggcat ccagcgactg
    45661 accaaacaga tagttaaacg ccgtgagtcc cgcgccaatc cctaaggcaa tcatcaattt
    45721 tttaacgctg atgcgttcta aaaacagcag taacaagaca ggtaaaaaag tgacgatggt
    45781 gatggggaaa ctttcgccaa gctgggcgat tttgacgtta accagcagat aaatcagcgg
    45841 cagcaacagg tagctacaga ttctgataga agttgacata ctcctccagc atctgttgtc
    45901 cactgtaggc ggcgcggctg cgttggctga actcagccag cgtggtacca aatatcgcct
    45961 gcgcgatttc cggtttgctt aactgcacca gttgcagcac ctcttcttcg ctgacggttt
    46021 taccgccgga tttttgcaac acttcccgcg ccgcatcgct atgggtggca atcaccggca
    46081 cgccaatcga tagcgcctca cacaaaatca gcgggtagtt atcgacgcga gaactgaata
    46141 ccagcgcatc catctgattg agcgcgctca tcagcttacg tttgtcggtt tcaaagccgt
    46201 gattaaccac gttgccagcg gtgaacggcg agaacttacc aaaggtatgc agttcgattt
    46261 tgtcgcccag cgccatcatc tcacgcacca gttgctggtt agttttgccg tcgtaacgca
    46321 ggtcatgcgc caccacagcg attttcggct tgccctgggt ttcgcgcacc ggaggcagat
    46381 ccgccagaat cgcttcggtt gccatatcaa taccattatt gataatccgg caacgccctg
    46441 gaccgtacag gctattgaaa gcgtcagcca catgctggct gggggaaata aactgacagc
    46501 ccagcgccag catctcacgg aataactggc gtttgcccgc caccagctgg tgcgcccgat
    46561 caatcttcac cggcggatag ttatttaagg tcgggcattt ctggcagccc gttttccagc
    46621 cttcacaacc gtcggtaaag gcgcagcgtc cggtaacgct ccagtggtcg tgcagcgtcc
    46681 agaccagagt gacgtccggt ttatggtttt tcaccttttc gcaaaagcgc accacgctct
    46741 taagatttag ccagtagctg tgcagcacat gaaaatgcag gaccaccgga cccggtgtac
    46801 gagtaatggt gcgatataac tcattgaaat tgccaaacag atcgcgatta aacagacgaa
    46861 acaggacaat attcgccatt gcagtcatcc gcggcgtatg tttgatgacc tgcggatagt
    46921 tttgatggct gacgctctct ttgccgcctt tgccgtaacc gtagacaaaa tgtgacgcaa
    46981 gcccctgttg cagcgcacgc tggtggagat ctaacgccac acctgctgcc ccgccttccg
    47041 ccagtcgcac attaaattgc aaaatattca tttaattacc ttcactcgcg ctttttctcc
    47101 caccaccagc gcgttgtccg ggacagagtc gagcaccacg ctgcccgcac ccacggtgac
    47161 gttgttacca agcgtgatat caccaagaat aataacgttg gcaccgagtt cgacgccgtt
    47221 gccaatatgt ggacatgcca tgttatcggc accacgattg ccgatagtga cgccgtggcg
    47281 aatggtgaaa tcatcccccg ccaccacgtt tttattgatc actacggcgt aaccgtgatg
    47341 gatagtaaag cggcggccaa tggtcgcggc agcctggatt tcataaccga aaaagcattc
    47401 ggtgataatg cgatacagca ccagcagagg ggccgcccaa atattgttga ggacgttctt
    47461 tttgcgccac accgaacaaa aatgagcgac gcgatacgct agaaccatgc agcacggacg
    47521 taaactccag ctgttggcgc gcagatcttc cagcatcttt agcgcccccg aataccatca
    47581 gccagacgtt tgccgttacg caccgacagc agcgtcagca aagtgcgcca ggtcatacgt
    47641 ttattgcgga tctggtagag ggtaaacagc tgatattttt tgctggcgcg gtcaaatttg
    47701 tctttgtgct tgcggtaaaa gtggaagtat ccggagaatt ttttcggtga cgaggtgatc
    47761 tgcatttcac cgtgattgat atgcaggatc tgcgtcgcct cttccacttt ccacggttcg
    47821 ccgtactcca ccaccatccg caggaagatg tcgtaatcct gtgccgcttt cagttcggta
    47881 tcgaacaaac actctttgaa acgccatgcc caggtaaaga cctgattgcc aatgatattg
    47941 cgtttataga acaggcggcg tgagtacggc gatttgggat acagtggtaa gcttgccggt
    48001 tgggaataaa cttctccctg gcaaacgtag tcgttagcgt acaaaaaggc gtgagtgacc
    48061 agttgctgtt tatgggcgag gaagacgctc agacggttgg gtgtccattc atcatcatca
    48121 tcgatcccgg taatgtattc cccttgcgcc agcataatag cctggttacg taccgcgcac
    48181 gccccgctgt taatgtcgtt gtgaatgtaa gtgatacgcg gatcgttgag ggcggtgacg
    48241 tactgttgca gttgttccca ggaggtggag caatcatcca cgatgatcat ctcccagttg
    48301 ctgtagtcct ggcgcaagac cgattttatc gcccgaatcg ccagttgttg gcggttccag
    48361 gtcggcatat agattgagat cagcggattg tctttcatag gttgttctcc cggagtgtcg
    48421 agatgttctg ccggtttata agcttgttta cgggttctgt tgccggatgc ggcgtgagcg
    48481 ccttatccgg cctacggagc tggtttgctt gccggatgcg gcgtcaacgt aggtcggata
    48541 agatgcgtca gcatcgcatc cgacaacgga tctcgttatt tcgcatccga cttatattcg
    48601 tattcgtaat agccataatc ctgatacgcg ctggcgcggc ggaagatgga gttcagaatc
    48661 acccctttca ccggaatacc gttttgctca aagcggctca gactggtttc cacttctttc
    48721 aatgtgttga ccgcataacg cgccaccatt aatgtggttc cgacatgacg accaacaatt
    48781 gccgcatcgg tcactgccag aatcggcggc gtatcaatca acaccaggtc atagttttta
    48841 ctcgcccagt tcaccagttc ggcaaagcgt tcgctcatca acagttcaga aggatttggc
    48901 ggcacctgac cgcgcgggat caggtcaaat ttggcaatag aggtcggttt agctgcggta
    48961 gtaatatcgc cctgaccaat cagaatttcc gacaggccat tgacgttatt ggtgcccaac
    49021 agctcgtggg tgtagccttt gcgcatatcg cagtcgatca acaacacgcg tttattggtc
    49081 tggctgatca ccgccgccag gttggcgcag acaaaggttt taccaattga cgggctaacc
    49141 ccggtcatca tcaacacatt gttctgtgcc tgcatcatcg cgaagtgcaa actggtacgc
    49201 agactacgga tggcttcaat cgccagatcg gttggattcc ccaccgccag tagctggctc
    49261 tgtttatagc gtttaatccc tttgatggtt ttgacgctat cacgcgcttt ctgccattcc
    49321 gacagcggga tgctggcata gacgctaata ccgtgttctt ccagtacttg cgggctttca
    49381 atgccgcgat taaacaacga gcgcagcagc acacccacga tagaaagcat caggccaagg
    49441 ataatcgcgc cgaggataat cagccctttc ttcggtttta gcacgccagg ctgggtgatt
    49501 gccgggtcaa caatgcgcac atcgccgacg gtgctggctt cggtgatttt cagctcctgc
    49561 tctttattca gcagttgcat atagacctgc tgaccagact cgacatcgcg ggtcaggcgc
    49621 acaatctcct gctgggtttt cggcatcgcc gttacgcgac cgttaagttt ggctttctct
    49681 tcttccagcg cctgacgttt ctccagcagc gtgcggtacg ccgggtgaac tttggtgtac
    49741 agcttggaga tttccgcctc tttaaaggtc agttcgttca actgcgcgtc gatgttcacc
    49801 atcgaatcga gcaccgcttt cgcttccagc ggcagatcaa cagaatcttt atcctgacgg
    49861 aaggcattca gtttgttttc ggcaacatcg aggcggctac gtacttccgg taactgttgc
    49921 gcgaggaaag cgaggctttt cgacgcttcc gccgatttgc gctcaatatt ttgttcctga
    49981 tagttacggg cgatgctgtt aagaatgtcg cggatctgtt cgcgatcttc accggtataa
    50041 gtcaggctca gtacgcctgc gtctttgccg ttctccgtta ccatcaggct gttttgcagt
    50101 tggttgatca tccccaacgt ggagtatttg gtgacggtaa actcactgcc cgggcgggcg
    50161 tgaatggctt caaccatcag cgtgacgcct tcttttttca gcatctggcc cgcttgccca
    50221 cgggcgctaa agccgccatc actgctcagg gtgtagtttt tattgtccag cacattaagc
    50281 gtaaacacct agtccgccat ctctttcggg cggttaaagg tagtcacttt caccgtctcg
    50341 ttctggcgtc ccatcagtcg atcccagccc gccccgaaaa tcgggaacgt gtttttgctc
    50401 actgcaatat cgaggtcgag atcgtccacc gttttaccaa gcaccagacg cgaacgaatc
    50461 aactggatct cggcgtccga tgcaggcggt ttgttggcta atgccgaacc aatgtcctgc
    50521 actaacgaat tgccgctgtt ttgctcgatt tgtaccagtg cgtcggcact ataaatcggc
    50581 gtggcgaaga aggtgtaaac cacggcacag aggacaaata cagcggtgat gccaatcacc
    50641 caccagcgcg cttcaatgac ggtgccgacc aggcgaccaa tatcgatttc atcactgccc
    50701 gttaccggag cggcatgttg ttttactttt tctgtcattc ttatacctgc tctgcgttca
    50761 atgcctgcgc ccactggcgg gcagaccgtt caagtaatgt gtacaccgct gcaaacgttt
    50821 cccagctttt gcgatacgga tcggggattt cacattcgtt atcccagtga ccaaacagca
    50881 tcactttgcc gcgcatctca ggtgccatct cgcataagcg ttcgatatgg cgcttttcca
    50941 tggtcaaaat caggtcatag ttgcgacaca ggcggcggct gatttgtcgt gcacagtggc
    51001 cttccagaga cagttgatgt tctgcggcga cgctgatagc ggtaggatca gcgcccttac
    51061 cgaccagcgc gccgagtcca gcggactcca ctttcagttc cgggtgataa cgttgcagta
    51121 agcgttccgc cgtcggggaa cggcaaatat tgccgacaca gacaactaat atgttgttaa
    51181 acatgacgat taccagttat gaatgtcgct ggctgtatcc gtcatgtaac ggacaccgct
    51241 aatagttggc agcaactgat tgatcagacg gttccagcgg gaaaccgggg cggtggtgac
    51301 atacaccacg tcataaggtt gcaggcggaa ttctgtcgcc atcaccagcg acgtggcatc
    51361 ggacatatcc agctggtaga tattggcaat cttgccgtta cgcccgccct cgcctttcag
    51421 cggacgaatg acaaagatgc cgctggcgtt ggaggtggtc atgtcgatac cttcagcatt
    51481 acccagggct tcagtcaggg tcatgccgct aaagtccatt ttcagggtgc tctgtttctt
    51541 cacttcaccc atcacaaata ctttcagatc atcattacgc ggcacgtaga gaatatcgcc
    51601 gggataaagc agtcggttct gattgaggtc gccgttttgc atcagcacct gcaaagaaat
    51661 gcgttcttca cgaccattgt gtgttagcac cacgttgcgc cagtcagcgg tgtcggtcag
    51721 gccacctgcg gcgttgatgg cgtcgagaat ggtcagtggt acgttggtga tcgcctgttg
    51781 accggattta ttcacctgac ctgagatata ggtcttttgt gagcggaagg cggcgatatt
    51841 aacgtccacc tgcgggtcag cgatgtacgt cgctaagcgc ccggtaatat cactgcggat
    51901 ttcagcgagc gttttcccga ctacgtgaac cttgccgata tacgggtaaa acatagtgcc
    51961 gtcaggctgt acccagttgc cggtgtcgct ggagctgcgg tactgaccag ctggcgtggt
    52021 gagttccggg tgatcccaga cggtgacatt aagaacgtcc cccggcccga cgcgatactg
    52081 gtaattcgcg atctcgcttt ccagcgtcat attggggcgc gctacattcg gacgtgggcg
    52141 taattggtca atcaggcgcg gggtcagcgg ataaacattc accattttgt cgagatcgaa
    52201 atcagcgtcc tgctgtttga tgacgtcttt gcccatcgtc gacatattgc tgcccggaag
    52261 tactgtgcaa ccgcttatca aggttactga caccaataat ggcatcaatt tcattttgga
    52321 tttcatcatt gtttatttat cactttggca gagtaattat cctgtgcact attaatagca
    52381 atgtcgccat gcacatttac cttgcagtta attgaataca aatttaactg gcatcagtcc
    52441 taaaaaaatt gatttcatcc gcaggctatt gacagaataa ttcagactgg tctttcaggc
    52501 atccagacac gctaccgccc ctggcttttt agccaccaat acactgattt agcttaattt
    52561 tttaaaccct ctctgcatac aatcgttgat gagaaagggt tattgcggaa attaacttcc
    52621 gaatataagg tgacattatg gtaattgaat attggctctc caataatgca ggaggaagtg
    52681 ttacagctaa cggaatagca ggcaaggtaa caattcggca attggctatt tttaagaatt
    52741 atattaagtg tcattcaata tggtttttag gagtttcttt aggttgacaa tatttaatat
    52801 tgcgcctccg catgcgatat ttcttaaata atgttttatt attaccactt ttaattcagg
    52861 gataatgtga ggttattacc ctcaaataat atgagataaa tagtgctgca acattgcatt
    52921 tttgccccga tttatccatg atcgaattgt gacatttgtc atacaacgaa taggttttgt
    52981 acttactatg gaatggattg ccgatccgtc tatctgggcc gggttaatca cgctgattgt
    53041 gatcgaactg gtcctcggca ttgataacct ggtctttatt gccatcctcg ccgaaaaact
    53101 accgccgaag cagcgcgacc gcgcacgggt taccgggctg ttgctggcga tgttaatgcg
    53161 cctgttactg ctggcgtcaa tctcctggct ggtcaccctg acgcaaccgc tgttcagctt
    53221 ccgctcgttt acctttagcg cccgcgactt aatcatgctg tttggtggtt tcttcctgtt
    53281 gttcaaagcc acgatggagc tgaacgaacg gctggaaggg aaagacagca ataatcccac
    53341 acaacgcaaa ggtgcgaagt tctggggggt ggtgacacaa attgtggtac tggacgccat
    53401 cttctcactc gactcagtga ttaccgccgt cgggatggtc gaccatttac tggtcatgat
    53461 ggccgccgtg gttatcgcta tcagcctgat gttgatggcc agcaagccgt taacgcaatt
    53521 tgttaacagt cacccgacca tcgttattct ctgcttaagc ttcctgttga tgattggctt
    53581 tagcctggtg gcagaaggtt tcggcttcgt cattccgaaa ggctacctgt acgctgccat
    53641 tggtttctcg gtaatgatcg aggcgctcaa tcagttggct atctttaacc ggcgacgttt
    53701 tctttccgct aaccagacgc tacgccagcg gactaccgaa gcggtaatgc gcctgcttag
    53761 cgggcaaaaa gaagatgcgg aactggacgc cgaaaccgcg tccatgctgg tggatcatgg
    53821 taaccagcag atctttaatc cgcaggaacg gcggatgatt gagcgggtac ttaatcttaa
    53881 ccagcgtact gtcagcagca ttatgacgtc gcgccacgat attgagcata tcgatctcaa
    53941 cgcgccggaa gacgagatcc gccagttgct ggagcgaaat cagcatacgc ggctggtggt
    54001 taccgacggt gatgacgcag aagatttgct cggtgttgtt cacgttatcg acctgctaca
    54061 acagtcactg cgtggcgaac cgctcaacct gcgggtgttg attcgccagc cgctagtgtt
    54121 cccggaaacc ttgccgttgt tacctgccct ggagcagttc cgtaatgccc gcacacactt
    54181 tgcttttgtg gtggatgagt ttggctcggt ggaagggatt gtgacattaa gtgacgtaac
    54241 tgaaaccatt gccggtaact taccgaacga agtggaagag atcgacgccc gccatgatat
    54301 tcagaagaat gcggacggtt cctggacggc gaatggtcat atgccgctgg aagatctggt
    54361 gcaatatgtg ccgctgccgc tggatgaaaa acgtgaatat cacaccattg ccgggctgtt
    54421 gatggaatat ttacagcgta ttccaaaacc tggcgaagaa gttcaggtgg gggattattt
    54481 gcttaaaacg ttgcaggtgg aaagccatcg cgtgcagaag gtgcagatta ttccgctgca
    54541 taaggatggc gagttggagt acgaggtgtg atggtatcgg tcattttacc caatagccga
    54601 aaggaataag atgagggaac cgcgccagcg gcgatttacc gccgggagcc cgggttgcca
    54661 gggtggtggc gattgagccc ccctggcacg ttcaccggct tgagcgttcc atagtagcga
    54721 ggaacatcaa gtgaacggaa cagccttcga tcttacatat tcagaatata atgatgccgc
    54781 cacgaacgcc tgatgcgacg ctttacgcgt cttatcaggc ctacaggaca ggtcaccagg
    54841 taacctacat cttctccagc aacttcttca catctttgcc attgcgggaa tctttattcc
    54901 gctcggccca gtcattcaga cgacgtttcg cttcgtcctg tagatgtttg cgcagtaact
    54961 gatccacttg cagactgtaa ttgagttgct gccagttgcc ataaacccgc agcggtactg
    55021 gcgtttcttt aaggaaatca atcagtttgc tttccccgtt ccagccaccc acgacccgaa
    55081 tatcaaactg ggtgtcgcag gtttgctccg ccagattcaa cgtaccagcc ccggaaagcg
    55141 ccagcacagg cgattgacct tgcatgtcgt ttaacgtcac gacgccatcc ttcaacgtca
    55201 aatcggtggt aaagcggtca agacgcgtta cgttatcgaa gttttcagcg gccttcacat
    55261 caccaccatt acgttctacc gcttgctgaa tcatctgctg gaagttcatc ccttccatgc
    55321 gcgtgtcggt catttcgaca tgtgcctgtc cttgccagtt gtggcggaat gcgtcggcat
    55381 ctatgtcagc accggagaaa tcaccagcca gtgacatctt tccggtcaac gaaatcggat
    55441 agttaaacgc cttcagaatg gtgccaatct caacgttttc cagccgtggc tggaagttta
    55501 tccgcggatt tattgatgtc gcgtccagcg tgcccggcag tgaaacctgt ccaccgttaa
    55561 gcttgccctg cagttgagta atttccagca aacccgactt gttggtcatt tgcgtggcaa
    55621 catctgtaaa attcattccg cgccagcgca cgttactggc ctgcaacaaa atatcagccg
    55681 taaagccttg cagtccctga tatgccggtt catcaatacg cgaagaaatg accgggcgcg
    55741 gcaacgttga ttggctctgc ccctgctgcg cggcaccgtt ttcaccattc gctgtttcat
    55801 taagcgggat gaggttgtca agattcagtt gcgggaattg cagtctcagc tgccattccg
    55861 gtttctctgt cagcgtgacc tgtgcttgcc cgctcagcgt actgtcattg gcggtcaaac
    55921 taatttggtt aaatgaaagg cgtttatgtg actcctgcca ctgggcctgg aaactcccct
    55981 gcccatgaat accttgtttt ggtaaatctg caccctgcaa ctgccagtta atttgttcaa
    56041 tagccgccgt taaatcatgc ggataatcag aagcatctac cgtaccgtta agggatatcg
    56101 tgagatcgcg ctgatcgcga ttaacccgcc cggagaactc aaatgaacca cgatgttggg
    56161 gatcttgttc catttgcagg cgaatattgc ggattgtcac ctgctcgtca tcttcatgct
    56221 ggaacaccag cacgctgtcc gccaccttaa gactggatat atcaaacgac catccgcgat
    56281 cgtctgacag atccggcaag gtattgtcgc gcggtgcaac cggagcgtct tcactgcgca
    56341 ccacttccgt ctgcggcgtc agttggatca ctgccccttt tagcatcacc tgcttaacgc
    56401 tcagttgatg actcagtagt ggtaaaagcg ccacgtccag acgcatgttg tcggcgcgaa
    56461 ccagtggctg gctcgcgccc tgggcggtga gagacattcg cccggagagg atactaagct
    56521 gcggccagac gtgccaacgc agtggcccgt cgagctgcaa ttgataaccg ctacgtgcag
    56581 caacttgctt gaccatatag ttgcggaaat cattcggatt caccagcaac actaacgcag
    56641 ataacccggc caccagcacg accaggagta tcatcagcgt cgtcagaaat cgtctcatgg
    56701 tatcctcaat gggcctgaat tagtctttat cgattcggct ggctaccgcg ccctgctggt
    56761 tgcgatattt cgcatcttca cggcggttgt aaggtcgcgc cgccgggccg gaaagcggct
    56821 caaagctcag cgcaccaatt aacatgcccg gacgcagcgc cagcggcagc ttaccggagt
    56881 tgtagaactc cagcacaatg caaccagacc agcccggatc gatacggtgc gcggtgacgt
    56941 gcaccatcag ccccagacgc gccaaagagg aacgcccgtc cagccagccc accagatcgg
    57001 ctggcagcgt caccgactcc agcgtcaccg ccagcgccag ttctcctggg tgaagataga
    57061 acgcctcgcc ctcgtcgaga acgatctcat cgctcatcac gcggtcaagc gcggcgctca
    57121 cttcatcttt gggaccgctc agatcgataa acgctgccgt gtgaccacgg aaggtacgaa
    57181 atttattgcc caggcgtaca tccaccgtcg cgccgttaat acgctccact ggcggacgtg
    57241 ggttgatcga caaacggcct tcatcaagcc aggcttcaat atctcggtca cacagacgca
    57301 tggcattttc tcctttcgcg catcactccc ttaacgccaa ttacgtcaag ggcataccag
    57361 gttatcactg aacggtacac aatttatcaa gcttattcaa agaactgact tattttcgct
    57421 ttcaatatat cgatcgcgat gcggtttttc ccgccgcgcg gcacgataat gtccgcatat
    57481 tgtttagaag gctcaatgaa ttgcaggaac atcgggcgca cggttttttg atattgcgcc
    57541 atcacggaat ccattgaacg cccacgctcg ttaacgtcac gcttgatgcg gcgcatcagg
    57601 cagatatcca gcggggtatc aacgaaaatg gagaagttaa gttcgtcacg caaacgcgca
    57661 tccgtcagca acaaaatgcc ttcgagaatg atgaccttct tcggctcaac cgtcaccgtt
    57721 tctttcatac gcgtatgttc aacatagctg taaaccggca ggtcaattgc cgagccgcgt
    57781 ttcaacgctt gtaaatgctc aagcagcagg ttgtgatcca tcgcgctggg atggtcgtag
    57841 ttggtcttaa cgcgttcttc catcgacaga tggctttgat ctttgtaata gcagtcttcg
    57901 ggaattacgc cgatgtgttc atcaccgact tgctcacgta attcacgata aagggtactg
    57961 gcaataagac tcttgccgga agccgatgcg ccagcgatac cgataatgac gcactgatga
    58021 gactgatcag tcatatattt agcgacctga ttaacctgga tgttaggaag ggggcgacga
    58081 agcgccaaac gcggcaatta tagggatttc atccgcctga taccagtcga atagcgttgc
    58141 cgcgcgctca gagttaattg ttgacaaaga attcccggtg gcaaattacg ttgatcagtt
    58201 ttatgtaagg taaaaaatgt tatacgcagt tgcgcaaatt atccgccttt acgtcacttt
    58261 atgagcaatt cacatataaa atgtaaaact tttgtactag cataaacaca gaaacgaata
    58321 ctggcgacct ggtcttgcgg ataaagcggt aatgagcaaa caatcacagc atgtattaat
    58381 tgccctgccc cacccactgc ttcacctggt cagtttaggt ttagtctcgt ttatctttac
    58441 ccttttctcg cttgagcttt cgcagtttgg cacccaactc gccccactgt ggttcccgac
    58501 gtccatcatg atggtggcgt tttatcgcca tgccgggcgc atgtggccgg gaattgcgct
    58561 gagctgctcg ctgggaaata tcgccgcatc catcctgctt ttttccacca gctcgctgaa
    58621 catgacctgg acgaccatca atattgttga agccgtggtc ggggcagtgc tgctacgtaa
    58681 attgctgccg tggtataacc ccttgcaaaa tctggctgac tggctgcgtc tggcattcgg
    58741 cagcgccatt gttccgcctc tgttaggggg tgttctggtt gtcctgctga cgcccggaga
    58801 cgatcctctc agggcatttt tgatatgggt actgtcagaa tccatcggcg ctctggtact
    58861 ggtgccgctg ggattgttat ttaagccaca ctatctgctg cgccatcgca acccacggtt
    58921 actttttgag tcactgctca cattagccat cacgctgacg ttaagctggc tttctatgtt
    58981 gtacctgccg tggcctttta ctttcattat tgtgctgttg atgtggagcg ccgtgcgcct
    59041 gccacgaatg gaagcctttt tgatcttcct taccacggtg atgatggtgt cgctgatgat
    59101 ggccgcggat ccctccctgc ttgctacgcc gcgtacgtac ctgatgagcc atatgccgtg
    59161 gctactgttt ttgctgatcc tgctgcccgc caacatcatg accatggtga tgtatgcctt
    59221 tcgtgcggaa cgcaaacaca tttccgaaag cgaaacccgc tttcggaacg cgatggaata
    59281 ttccgctatc ggtatggcgt tagtgggcac cgagggacaa tggctgcaaa ccaacaaagc
    59341 gctctgccag tttctcgggt acagtcagga agagctgcgc ggactcacct ttcagcaact
    59401 gacctggccg gaggatctca ataaagatct ccaacaggtt gaaaagctga taagcggtga
    59461 aataaacacc tattcaatgg aaaaacgcta ctacaaccgt aatggcgatg ttgtctgggc
    59521 gttgcttgcc gtctcactgg tgcgccacac ggatggcacg ccgctctatt ttatcgctca
    59581 gattgaagac attaacgagc taaaacgcac cgaacaggtg aatcagcaac tgatggagcg
    59641 catcacgctg gctaacgaag cgggcgggat tggcatctgg gagtgggagc tgaagccgaa
    59701 tatttttcga gctgtatgaa attcctccgc atatcaaacc gaactggcag gtgtggtacg
    59761 agtgcgtgct gccggaagat cgccagcatg ccgaaaaagt gattcgtgat tcgttgcaat
    59821 cacgctcgcc ctttaagctg gaatttcgca ttaccgtaaa agacggtatt cgccatatcc
    59881 gcgccctcgc caaccgggta ctgaataaag aaggcgaagt cgaacgcctg ctcggcatta
    59941 atatggatat gaccgaggtt aaacagctta acgaggcatt gtttcaggaa aaagagcgcc
    60001 tgcacattac gctggattcc atcggtgaag ccgtggtctg tattgatatg gcgatgaaaa
    60061 ttacctttat gaatccagtg gcggagaaga tgagcggctg gacgcaggaa gaagcattag
    60121 gtgttccgct cctgacggtg ttgcatatta cttttggcga caacggacca ttaatggaga
    60181 acatttacag tgccgacacc tcacgttccg cgattgaaca agatgtggtg ttgcactgcc
    60241 ggaacggcgg cagttacgac gtgcattaca gtattacgcc gttaagtact ctggacggca
    60301 gcaatatagg ctcggtactg gtgattcagg acgtcaccga atcacgcaaa atgctgcgcc
    60361 agctgagcta cagcgcctcc catgatgcac tgacgcatct cgccaatcgc gccagttttg
    60421 agaagcaact gcgtatcctg ctgcaaacgg taaacagtac acatcagcga catgccctgg
    60481 tgtttatcga tcttgatcgc tttaaagcgg tgaatgacag cgccgggcat gcggcgggtg
    60541 acgctttact gcgcgaactg gcgtcgttga tgctgagtat gctgcgctcc agcgacgtgc
    60601 tggcgcgact cggtggtgat gaatttggtc tactgttgcc agactgtaat atcgaaagtg
    60661 cgcgttttat cgctacacgc attatcagtg ccgtgaatga ttatcacttt atatgggaag
    60721 gccgtgtgca tcgggtaggt gccagtgccg ggattacctt gattgatgac aacaatcatc
    60781 aggcggcaga agtgatgtcg caggctgata tcgcctgtta tgcctccaaa aatggtggac
    60841 ggggccgggt gacggtttac gaaccacagc aagctgccgc acatagcgaa cgggcggcga
    60901 tgtcgcttga tgaacagtgg cggatgatta aagagaatca gttgatgatg atcgcccacg
    60961 gtgtcgcttc gccgcggatc ccggaagcgc gtaatttgtg gctgatttca cttaagctct
    61021 ggagttgcga aggcgagatt attgatgaac aaaaatttcg tcgtagcttc agcgatccgg
    61081 cacttagcca tgctcttgac cgacgggtat tccacgaatt tttccagcag gccgcaaaag
    61141 cggttgccag taaaggcata agcatcgccc tccccctttc cgttgccggt ttgagtagcg
    61201 ccacgctggt gaatgatctg cttgagcagc tgggaaatag ccctctacca ccacggttat
    61261 tacatctgat tattccggct gaagcgattt tagatcacgc agaaagcgtg caaaaactgc
    61321 ggctggtggg atgtcggata gtgctcagcc aggtgggccg cgatctgcaa atcttcaact
    61381 cgctgaaagc gaatatggca gattacctgc tacttgatgg tgagttatgc gccaacgtgc
    61441 agggtaattt gatggatgag atgctgatta cgattattca ggggcacgct cagcgactcg
    61501 ggatgaaaac catcgccggg ccagtcgttt tacccttagt gatggatacg ctttctggca
    61561 tcggcgtcga tctgatttat ggtgatgtga ttgccgatgc ccaaccgctg gatttgctgg
    61621 tgaatagcag ttatttcgcg attaactgag agagcgtttg cccattgcct gatgcgacgt
    61681 atcaggccta caattcgtcc gttccgtctg gttgccagcc ttccgtatac cagatatgca
    61741 acagcgcata agaacgccag ggcttccagc gctcggcata acggcggatt tgtgccggtg
    61801 tcatccccgg aaatcgctgt ttaatcagat aatcatccgg cagaaaaaca tctttcgcct
    61861 gccagccacg caaagcgaaa taattcgccg tccagcgccc gatacccgga aaagtttgca
    61921 gcgttttcat cgcctgctcc acatcgcccg gaattgtcat tggtaagctg ccctccagcg
    61981 ccgcatttgc cagatgaatc agtgcctctg cccgtttcaa cggcatgcct aacgctttta
    62041 atgcctgcgg gtcggctgct gccagccgct gaggcgtggg gaagcagata tactccggaa
    62101 aatcatccag ccgttcgcca taaagctgta caactttggc agtcaatttt gccgccatcg
    62161 ccacgctcac cagttggcct aaaatcgccc gcacaccctg ctcaaaagca tcaatacagc
    62221 cgggtaaacg caatccgggc cgcgccgcgc ctaacttgcc caacgcaccg ttaacaatct
    62281 gcgggttaca ttgcagatca aacaggcggc tcattttcgc cagacactca gcggcaacgg
    62341 gttctaaacc tgcacttaaa tttatgtgca gagtatggcg ggctatatcc ggaatagcag
    62401 tcaccacgcc gcgatattcg cccaccgcca gactacgggc ataataatcg tcagcgaccg
    62461 tttccacacc actcactgca cgggcggcga gaaatcccaa catccacgac cagtcatacg
    62521 gcggctgcca gttcagggta tacatcgcat ctccttattc atccgctttc agcataaacg
    62581 ttattcagac gctacgcttt gctttcatat tccggttgtc gcgacggcaa catttcgcta
    62641 aagtcacgcc ccttcttcac cggcatgggg attatttcgt gtttattggt tttgattacg
    62701 gtacagcaaa ctgttcagtg gcggtcatgc gtgacggtaa accgcacttg ctaaaaatgg
    62761 aaaacgacag cacgctgctg ccttcaatgc tttgcgcgcc aacgcgtgaa gcggtaagcg
    62821 aatggctgta ccgccatcat gacgttccgg cagacgacga tgaaacgcag gcgttgttac
    62881 gacgggcgat tcgttataac cgcgaagaag atatcgatgt tacagcgaaa agcgtgcagt
    62941 tcggtctttc ctcactggca cagtacattg atgatccaga agaagtgtgg tttgtgaaat
    63001 caccaaaatc gttcctcggt gccagcggct taaaaccgca gcaggtagcg ctgtttgagg
    63061 atctggtctg cgcaatgatg ttgcacattc gccagcaggc gcaggcgcag ctgccagaag
    63121 cgattactca ggcggtgatt ggtcgcccga tcaacttcca ggggctgggc ggcgatgaag
    63181 caaacgccca ggcgcaaggg attctggaac gcgcggcgaa gcgtgccgga ttcagggacg
    63241 tggtattcca gtatgagccg gtcgcggctg ggctggatta cgaagccacc ttgcaggaag
    63301 aaaaacgggt gctggtggtg gatatcggtg gtggtacgac tgactgttca ttgctgctga
    63361 tgggaccgca gtggcgttcg cgtctcgatc gtgaagccag cctgctgggt cacagtggtt
    63421 gtcgtattgg cggtaacgat ctggatatcg ccctggcgtt taaaaacctg atgccactgc
    63481 tgggtatggg tggcgaaacc gaaaaaggca tcgccctgcc gatcctgccg tggtggaatg
    63541 cggttgccat caacgacgta cctgcgcaga gtgatttcta cagtagtgcc aacggtcgtc
    63601 tgcttaacga tctggtacgc gatgcccgcg aaccggaaaa agtggccctg ttacagaaag
    63661 tctggcgtca gcgtttaagc tatcgcctgg tacgcagcgc agaagagagc aaaatcgccc
    63721 tttcaaacgc tgcggaaacc cgcgcctcac tgccgtttat cagcgatgaa ctggctacgc
    63781 tgattagcca gcaagggctg gaaagcgccc tcagccagcc actggcgcgg attctggaac
    63841 aggtgcaact ggcgctggat aacgcccagg aaaaaccgga cgttatatac ctgaccggcg
    63901 gtagcgcccg ttcgccgctg attaaaaagg ctctggcaga acagttgccg ggcattccga
    63961 ttgcaggcgg cgatgacttt ggctccgtca ccgccgggct ggcacgctgg gcggaagtgg
    64021 tatttcgtta aaagaaaatg gctcagcagc ggcttaaatc tgcctgcgcc tgagccagtt
    64081 tttctgccgc ctgacgtaac ggttccatca acggcatggt ccgtgctgga gcataaaggc
    64141 ggaatcgctg caactctgtc gcgccgacag tcaacgccga ttccagccga tgtcgtttgg
    64201 cggccattac cgcctgtctg tctgctggcg ttaccgcttc gttcggcctg aacacaaaac
    64261 ggcggtcaca gctcgctttc cagtcgataa ccgcctgggt cagatggtcg ccaaaccctt
    64321 taacttgctt aacgccacga cgggtaacat ccgctgctgt ttcaatacca aaagaccgta
    64381 acgccgcttt acgcgcaggg ccaacgccgg gaatagaggc aaaaaatccc tccagaaact
    64441 tctgcttctg ccgttccctt gcggtgtcat aaagtgctgc cagagcgcgt ttctcctctt
    64501 ccggtaaccc gagaatttcg tccttcattt tttcgagcat cgcccgtttg gcgataaaac
    64561 cttccagccc gcccaactgt tggatctggc tgactaaatg ctcatagtcc attttcgcgc
    64621 gattaaatgc ctcacggcgt tgctggattt ctgctttgta cgctttgctt gtcagactgc
    64681 caataatcca gatagccgac agcacaggaa ccaaaataat ataacgcggt tctgcctgaa
    64741 ggccgcaaag caacagcgat aacgctgaca gtgcgatctc aatcagaatg atgtattcgc
    64801 gccgtaacag gcctaaagga agcggcctgc cagtcggttg gaaatgatcg ggtaatggca
    64861 attgcaatgc tggcggtgct actgacgcca tcaccatcgc ccagactttc gccagcacaa
    64921 aatcaccgct ggtggtaatg acctcttcac cgagatcaac aaaatagata acgccttgat
    64981 tatccagcgt acaccacggg cagtcggtca aatgagcggg ataaacatgc attgccgaaa
    65041 cgggacattt ctttaactgt tggcgcagag aatcaagtgc cgctacccac gctttagccg
    65101 tcggacgccc ggttgccacg ccactttccg tgaatgcctg ctgaaacatg gcttcaacat
    65161 cactcggtaa catcgatagc ggaatcgatc gtggcggcgg ttttaaacca cgtcgctgat
    65221 tatctgacgc gtaggcataa cggaaatggg taatatccgt ctccagcgca ttacccgcat
    65281 cagagataag cggcacacca gaataaggat gccggccacc aaacaagacg tgaaaaatca
    65341 gcaacgcaag gccaaaatta tcgtgatttt ctgtgcgttc aaagccgaca aatgacgaca
    65401 aggtttgtag ctctggcggc gtaaaatgcg acacgccgac ttcgcataaa tgcagtgtgc
    65461 cattgacgtt aatctgaaag gagtcgctat caatcagtac cactttgctg tcgcgaccta
    65521 ccataaaact gttctggttt acgtcaccca cgacgtgccc gtgctcgtga accgtagcaa
    65581 aagatgaagc aatattgcgc gcaacataga gtagaaaatc ccacgcacaa tgagggtaac
    65641 tctggcgacg atgtgccggg ctatagatca tatgaatcgg ttctttacca gaaacttttg
    65701 gcatcataaa accgataact tttccgcctc gtccaccgtg aagcgttgcc tgcggccagg
    65761 cgacataatt caacaactgc gcgtcagctg tcgcagccat aaaggcaagt ttgtcctgtt
    65821 ttgaggcggg tggcggcgtg tgataaatct tggcgacgct atcgacaaac tcctcgatat
    65881 cataaaccgc gccttcaccg cctttgccca gttcacggcc tggcgtaacg cactcaccag
    65941 tagcagtata taaagtgggt ttcatggtaa ccacagcgcc agtgccaacg ttttatcatc
    66001 atccgtacgc tcgtttaccg ccgggctgga caaaaactgc tttaacaatt caggtaataa
    66061 atcgagttgt tcctgcgtta ctgacgccag tccattgaaa aacggggtaa agaaaggcac
    66121 atgaggagaa ttatccagca tatttaacgc cagccgctga ataccatccg taaatgctgc
    66181 aactttatgc gcacgcccag tgctggtgaa agtttccagt ctggaaacgg catcttcgtc
    66241 ggtaatgaag tgcgtcatgt tggcatattc acccaccatc ggcgtgagag gcaattgcag
    66301 accgtgaccc aaatctacca ccacgccgcc atcgccaatc tgcataatca aggtgccgtc
    66361 aggcgatgaa atcaatccca gaaacgtgca ggcaaaatcg cgaactgcta atgctttggc
    66421 ttctgcctcg gcaaaaagtc gttgacgaat agtcagtacc atatttgtgg cgaggacatc
    66481 attaagcccc aattcaccgt cctgtacttt ttgcaccata aacgccatcg cttcattgac
    66541 ggcgagcgtc gcgccttctc ctccctgcga aacgctacct gcgccatcag caaggaacat
    66601 caccagtaat ggttgctggt cgtttaacca gacaacctgc atctggcagg catcctgaca
    66661 aggcaaatca gcactaatgt gcgatgttcc aacagcggat gcataaacca gacgccagct
    66721 cacactgacg tccagccttt tggcgcttcc agcacaactt ccgttcccgg cgtggagcgg
    66781 gaaaccgaac gcagcgaact ggataaccag ctaaacagtt cacggaattg taatccctgc
    66841 agtggcaaag gctgacgaac gctgatttgt gccagagtct tcatatccgc cccctgaaca
    66901 ccgatggaaa agaaggcaaa cttcttatct tcttccccct gaaacacttt gttggcggca
    66961 gcctgccact catcggttgg agcgccatcg gtgatcagga aaatccacgg gcgataatac
    67021 gaaataccat ttgcgcggta ctcacgtttc ctctcttcaa ccatatctag ggctttggta
    67081 atggcggccc ccataggcgt atccccctgg gcaaacagga tgggcgggaa aaagttagcg
    67141 gcgctggtaa agggttgttc cacatgcacc gggccgaacg tcacaatgcc gagttccact
    67201 ctttttaaag ccagcggatc agcaagcagt tcatcacgaa aggtaaccaa tccggcgtta
    67261 agttcattaa taggtctgcc gctcatcgag ccagaaacat ccagcagcaa aatgcagggg
    67321 caacgtggtt ccgggttact ggcaaaatcg ctggtggcaa acgtgatttg ttcgctcata
    67381 agaaatcctt tcttagagaa ttatcgaggt ccggtatcat accgattgca ataatgaaat
    67441 aagagcaaac gaagaaactt tcagaattag gcccgtcggc gcagaaaatt ttgctattcg
    67501 cctcgcaaga acggagagcc gtcgattgac actaagggcg gagtgacata atttcaggag
    67561 tgagggttag ggagaggttt ccccctcccc ctggtgttct tagtaagcct ggaagctaat
    67621 cactaagagt atcaccagta tgatgacgtg cttcatcata accctttcct tattaaaagc
    67681 cctcttctcc gggagaggct ttcccgtttc agcgtcccgc tgaaatcatc ggcttacctc
    67741 ctttcgccct gaatgcagtc tatcgctaac gcgtgaataa aatagtttcc tctgtgatta
    67801 ttgcgtaacg actcgcaaag aatatttgct ggcaggatcg cagactacaa agcctacgga
    67861 ttgacaatct tatcgtgaag gcatactttc aggagtgagg gtagagcggg gtttcccccg
    67921 ccctggtagt cttagtaagc ggggaagctt atgactaaga gcaccacgat gatgagtagc
    67981 ttcatcatga ccctttcctt atttaaggcc ccttcctcgg gaggggcttt cccgtttcag
    68041 cgtcccgctg aaatcgtcgg cttacctcct ttcgccctgt atgcagtcta tcgctgactt
    68101 gcggataaaa tagtttccag tgtgattatt gcgtaacgtc tcgcaaagaa tatttgctgg
    68161 caggatcgca gactgcaaag cctgcagatt gacaatctta tcgtgaaggc atactttcag
    68221 gagtgagggt agagcggggt ttcccccgcc ctggtagtct tagtaagctg gccagctaat
    68281 gactaagagc accacgatga tgagtagctt catcatgacc ctttccttat ttatggcccc
    68341 ttcctcggga ggggctttcc cgtttcagcg tcccgctgaa atcggcggct tacctccttt
    68401 cgccatgcaa gcagtctatc cctaacgcgt agataaaata gtttcctgtg ttattactgg
    68461 atgcgtgctc gcaaatgtgc ccgtcattca gacaattccc gacagtgttt cataattcct
    68521 ccatttttct cccttattgg ctggctacac tagtatcatt ccgcgaaacg tttcaggaag
    68581 agaaactctt aacgatgaaa ggcagttata aatcccgttg ggtaatcgta atcgtggtgg
    68641 ttatcgccgc catcgccgca ttctggttct ggcaaggccg caatgactcc cggagtgcag
    68701 ccccaggggc gacgaaacaa gcgcagcaat cgccagcggg tggtcgccgt ggtatgcgtt
    68761 ccggcccatt agccccggtt caggcggcga ccgccgtaga acaggcagtt ccgcgttacc
    68821 tcaccgggct tggcaccatt atcgccgcta atactgttac ggtgcgcagc cgcgtggacg
    68881 gtcaactgat ggcgttacat ttccaggaag gccagcaggt caaagcaggc gatttactgg
    68941 cagaaattga ccccagccag ttcaaagttg cattagcaca aacccagggc caactggcaa
    69001 aagataaagc cacgcttgct aacgcccgcc gtgatctggc gcgttatcag caactggcaa
    69061 aaaccaatct cgtctcccgt caggagctgg atgcccaaca ggcgctggtc agtgaaaccg
    69121 aaggcaccat taaggctgat gaagcaagcg tcgccagcgc gcagttgcaa ctcgactgga
    69181 gccgcatcac cgcaccagtc gatggtcgcg ttggtctcaa gcaggttgat gttggtaacc
    69241 aaatctccag tggtgatacc accggaattg tggtgatcac ccagacgcat cctatcgatt
    69301 tagtctttac cctgccggaa agcgatatcg ctactgtagt gcaggcgcaa aaagccggaa
    69361 aaccgctggt ggtagaagcc tgggatcgca ccaattcgaa gaaattaagt gaaggcacgc
    69421 tgttaagcct cgataaccaa atcgatgcca caaccggtat gattaaagtg aaagcacgct
    69481 ttaataatca gaatgatgtg ctgtttccca atcagtttgt taacgcgcgc atgttagtcg
    69541 acaccgaaca aaacgccgta gtgatcccaa cagccgccct gcaaatgggc aatgaaggcc
    69601 attttgtctg ggtgctgaat agcgaaaaca aggtcagcaa acatctggtg acgccgggca
    69661 ttcaggacag tcagaaagtg gtgatccgtg caggtatttc tgcgggcgat cgcgtggtga
    69721 cagacggcat tgatcgcctg accgaagggg cgaaagtgga agtggtggaa gcccagagcg
    69781 ccaccactcc ggaagagaaa gccaccagcc gcgaatacgc gaaaaaagga gcacgctcct
    69841 gatgcaggtg ttacccccga gcagcacagg cggcccgtcg cgcctgttta ttatgcgtcc
    69901 tgtcgccacc acgctgctga tggtggcgat cttactcgcc gggattatcg gttatcgcgc
    69961 cctgcccgtt tcggcgctgc cggaagtgga ctatccgacc attcaggtgg tcacgctcta
    70021 cccaggtgcc agcccggatg tcatgacctc tgccgttacc gcgccgctcg aacgccagtt
    70081 cgggcagatg tctggcctga aacagatgtc gtcgcaaagt tccggcggtg cgtcagttat
    70141 cactttgcag ttccagctaa cattaccgct cgatgtcgcc gagcaggaag tgcaggccgc
    70201 gattaacgct gcgaccaact tgttgccgag cgatctgcct aacccgccgg tttacagcaa
    70261 agtgaacccg gcagatccgc cgatcatgac gctcgccgtc acctcaaccg ccatgccgat
    70321 gacgcaagtg gaagatatgg tggaaacccg cgtcgcgcag aaaatctcgc agatttccgg
    70381 cgtcggcctg gtgacgcttt ccggcggtca gcgtccggct gttcgcgtca aacttaacgc
    70441 tcaggcgatt gccgccctcg gcctgaccag cgaaaccgtg cgcaccgcca ttaccggcgc
    70501 taacgttaac tcggcaaaag gtagcctcga cggcccttcc cgtgcggtca cgctttccgc
    70561 gaacgaccag atgcaatccg ccgaagagta tcgccagcta atcatcgcct accagaacgg
    70621 cgcgccaatt cgtctgggcg atgtcgcaac tgtagagcaa ggtgcagaaa acagctggct
    70681 cggcgcgtgg gcgaacaaag aacaggccat tgtgatgaat gttcagcgcc agcccggtgc
    70741 taacattatc tccaccgccg acagcattcg gcagatgctg ccacagctca ctgagagtct
    70801 gccgaaatcg gtgaaggtga cagtgctttc cgatcgcacc accaatatcc gcgcatccgt
    70861 cgatgatact cagtttgaat tgatgatggc tatcgcgctg gtagtcatga ttatctacct
    70921 gtttttgcgc aatattccgg cgaccatcat tcccggtgtt gctgtaccgc tgtcgttaat
    70981 cggcactttc gcggttatgg tgtttctcga tttttcaatc aataacctga cactgatggc
    71041 gttaactatc gccaccggat tcgtggtcga tgacgccatc gtggtgatcg aaaacatttc
    71101 ccgctatatc gaaaaaggcg aaaaaccgtt ggcggcggcg ctcaagggcg caggtgaaat
    71161 cggctttacc attatctcgc tgatcttctc actgattgcg gtgttgatcc cactgctgtt
    71221 tatgggcgat atcgtcgggc gactgttccg cgaatttgct attaccctgg cggtagcgat
    71281 tttgatctca gcggtggtgt cgctgaccct gacaccgatg atgtgcgcgc ggatgctcag
    71341 ccaggagtcg ttgcgtaaac agaaccgctt ctcccgtgcc tcggaaaaaa tgttcgacag
    71401 gataatcgcc gcctatggtc gtggactggc gaaagtgctg aatcatccgt ggctgacctt
    71461 aagcgtggca ctcagcacgc tgctgcttag cgtgctgctg tgggtgttca ttccgaaagg
    71521 tttcttcccg gtacaggaca atggcattat tcagggcact ttgcaggcac cgcaatccag
    71581 ctcctttgcc aatatggccc agcgacaacg ccaggtcgcg gacgtgattt tgcaggatcc
    71641 ggcagtgcaa agcctgacct catttgttgg cgttgatggc actaacccgt cgctgaatag
    71701 tgcacgttta caaatcaacc tcaaaccgtt ggatgaacgt gatgatcggg tgcaaaaagt
    71761 catcgcccgt ctgcaaacgg cggtagataa agtgccgggc gtcgatctct tcctgcaacc
    71821 aacgcaggat ctgactattg atactcaggt cagccgcacc cagtaccagt ttaccttgca
    71881 ggccacctca ctggatgcgc tcagtacctg ggtgccacag ttgatggaaa aactccagca
    71941 actgccacag ctttctgatg tctccagcga ctggcaggac aaagggctgg tggcgtatgt
    72001 caatgttgat cgcgacagcg ccagccgtct ggggatcagc atggcggatg tcgataatgc
    72061 cctgtacagt gcgtttggtc agcgactgat ttccactatt tatactcagg ctaaccagta
    72121 tcgcgtagtg ctggagcaca acaccgaaat taccccgggc ctcgcggcgc tggataccat
    72181 tcgcctgacc agtagcgacg gcggcgtggt gccgttaagc tcaattgcca aagttgaaca
    72241 gcgttttgcg ccgctttcca tcaaccatct ggatcagttc ccggtaacga ccatctcctt
    72301 taacgtgccg gataactatt cgctgggcga tgcggtgcag gcgattatgg acaccgaaaa
    72361 gacgctgaat ctgccggtgg atatcaccac gcaattccag ggcagcaccc tcgccttcca
    72421 gtcggcgctg ggcagcactg tctggctgat tgtcgcggcg gtggtggcga tgtatatcgt
    72481 gctcggcatt ctgtacgaga gctttattca cccgatcacc attctctcga cgctacccac
    72541 cgcaggggtc ggcgcgctgc tggcattaat gattgccggt agcgaactgg atgtgattgc
    72601 gattatcggc attattttgc tgatcggtat tgtgaagaag aacgccatca tgatgatcga
    72661 cttcgcgctg gctgctgagc gcgagcaagg catgtcgccg cgcgatgcaa tctaccaggc
    72721 ttgtctgttg cgttttcgtc cgatcctgat gaccaccctg gcggctctgc ttggcgcgct
    72781 gccgctgatg ttgagtaccg gggtcggcgc ggaactgcgt cgtccgttag gtatcggcat
    72841 ggtcggcggt ctgattgtca gccaggtgct gacgctgttc accacgccgg tgatttatct
    72901 gctgttcgac cgcctggcat tgtggaccaa aagtcgcttt gctcgccatg aagaggaagc
    72961 gtaagtgaag ttttttgccc tcttcattta ccgtccggtg gcgacgattt tactgtcggt
    73021 tgccattacc ctgtgcggca tactgggctt ccgtatgctg ccggtcgccc cgctgccgca
    73081 ggtcgatttt ccggtgatta tggtcagcgc ctcgctgccc ggtgcgtcac cagaaacaat
    73141 ggcgtcttcc gttgccacgc cgctggagcg ctcacttggg cgcattgccg gagtcagtga
    73201 aatgacctcc agcagttcgc tcggcagcac gcgtattatt ttgcagtttg attttgaccg
    73261 ggatatcaac ggcgcggcgc gcgatgtgca ggcggcgatc aacgctgcac aaagtttgct
    73321 gcccagcggg atgcccagcc gtccgaccta tcgcaaagct aacccgtcgg atgcgccaat
    73381 tatgatcctc acgctgacat ccgatactta ttcgcagggt aaactgtacg atttcgcctc
    73441 gacgcagctg gctccgacga tttcgcaaat cgacggtgtt ggtgatgtcg atgtcggcgg
    73501 cagctcactg cccgccgtac gcgtcgggct gaatccgcag gcgctgttta atcagggcgt
    73561 ctcgctggac gacgtacgca ctgccatcag caatgccaac gtgcgtaaac cgcagggggc
    73621 gctggaagat ggcactcacc gctggcagat ccagaccaat gatgagctaa aaaccgccgc
    73681 cgaatatcag ccgctgatta ttcattacaa caacggcggc gcggttcgtc tgggcgatgt
    73741 ggcgacagtg accgactctg tacaggatgt acgtaacgcc gggatgacca atgccaaacc
    73801 ggctattttg ctgatgatcc gcaagctgcc ggaagccaat attatccaga cggttgacag
    73861 catccgggca aaattaccgg agttgcagga aaccattccg gcggcgattg atctgcaaat
    73921 tgctcaggat cgctccccca ccattcgcgc ctcgctggaa gaagtcgagc aaacgctgat
    73981 tatctcggtg gcgctggtga ttctggtggt gtttttattc ctgcgctcgg gtcgcgcaac
    74041 tattattccc gccgttgcgg tgccggtttc gctgattggt acgtttgcgg cgatgtacct
    74101 gtgcggtttc agtctcaata atctttcgtt aatggcgctc accatcgcta ctggtttcgt
    74161 ggtggatgac gccatcgtgg tgctggaaaa cattgcccgt catctggaag cgggaatgaa
    74221 accgttgcaa gccgcactgc aaggtactcg cgaagtcggt tttacggtgc tgtcgatgag
    74281 tctgtcactg gtggcggtgt tcctgccgct gctgttgatg ggcggattgc cgggccgact
    74341 gttacgcgaa tttgccgtga cgctttctgt cgccattggt atatcgttgc tggtttctct
    74401 gacattaacg ccaatgatgt gtggctggat gctgaaagcc agcaagccgc gcgagcaaaa
    74461 gcgactgcgt ggttttggtc gcatgttggt agccctgcaa caaggctacg gcaagtcact
    74521 gaaatgggtg ctcaatcata cccgtctggt gggcgtggtg ctgcttggca ccattgcgct
    74581 gaatatctgg ctgtatatct cgatcccgaa aaccttcttc ccggagcagg acactggcgt
    74641 gttgatgggc gggattcagg cggatcagag tatttcgttt caggcgatgc gcggtaagtt
    74701 gcaggatttc atgaaaatta tccgtgacga tccggcagtg gataatgtca ccggctttac
    74761 aggcggttcg cgagtgaaca gcgggatgat gtttatcacc ctcaagccac gcgacgaacg
    74821 cagcgaaacg gcgcagcaaa ttatcgaccg tctgcgcgta aaactggcga aagaaccggg
    74881 ggcgaatctg ttcctgatgg cggtacagga tattcgcgtt ggtgggcgtc agtcgaacgc
    74941 cagctaccag tacacgttgt tatccgacga cctggcggca ctgcgagaat gggagccgaa
    75001 aatccgcaaa aaactggcga cgttgccgga actggcggac gtgaactccg atcagcagga
    75061 taacggcgcg gagatgaatc tggtttacga ccgcgacacc atggcacggc tgggaatcga
    75121 cgtacaagcc gccaacagtc tgttaaataa cgccttcggt cagcggcaaa tctcgaccat
    75181 ttaccagccg atgaaccagt ataaagtggt gatggaagtg gatccgcgct atacccagga
    75241 catcagtgcg ctggaaaaaa tgttcgttat caataacgaa ggcaaagcga tcccgctgtc
    75301 gtatttcgct aaatggcaac cggcgaatgc cccactatcg gtgaatcatc agggattatc
    75361 ggcggcctcg accatttcgt ttaacctgcc gaccggaaaa tcgctctcgg acgccagtgc
    75421 ggcgatcgat cgcgcaatga cccagcttgg ggtgccttcg acggtgcgcg gcagttttgc
    75481 cggcacggcg caggtgttcc aggagacgat gaactcgcag gtgatcctga ttatcgccgc
    75541 catcgccacg gtgtatatcg tgctgggtat cctttacgag agttacgtac atccgctgac
    75601 gattctctcc accctgccct cggcgggcgt tggagcgctg ttggcgctgg agctgttcaa
    75661 tgccccgttc agcctaatcg ccctgatagg gatcatgcta ttaatcggca tcgtgaagaa
    75721 aaacgccatt atgatggtcg attttgcgct tgaagcccaa cggcacggta acctgacgcc
    75781 gcaggaagct attttccagg cctgtctgct gcgttttcgc ccgattatga tgaccaccct
    75841 ggcggcgctg tttggtgcgc tgccgctggt attgtcgggc ggcgacggct cggagctgcg
    75901 gcaacccctg gggatcacca ttgtcggcgg actggtaatg agccagctcc ttacgctgta
    75961 taccacgccg gtggtgtatc tctttttcga ccgtctgcgg ctgcgttttt cgcgtaaacc
    76021 taaacaaacg gtaaccgagt aaatgacaga tcttcccgac agcacccgtt ggcaattgtg
    76081 gattgtggct ttcggcttct ttatgcagtc gctggacacc accatcgtaa acaccgccct
    76141 tccctcaatg gcgcaaagcc tcggggaaag tccgttgcat atgcacatgg tcattgtctc
    76201 ttatgtgctg accgtggcgg tgatgctgcc cgccagcggc tggctggcgg acaaagtcgg
    76261 cgtgcgcaat attttcttta ccgccatcgt gctgtttact ctcggttcac tgttttgcgc
    76321 gctttccggc acgctgaacg aactgttgct ggcacgcgcg ttacagggcg ttggcggcgc
    76381 gatgatggtg ccggtcggca gattgacggt gatgaaaatc gtaccgcgcg agcaatatat
    76441 ggctgcgatg acctttgtca cgttacccgg tcaggtcggt ccgctgctcg gtccggcgct
    76501 cggcggtctg ctggtggagt acgcgtcgtg gcactggatc tttttgatca acattccggt
    76561 ggggattatc ggtgcgatcg ccacattgct gttaatgccg aactacacca tgcagacgtg
    76621 gcgctttgat ctctccggat ttttattgct ggcggttggc atggcggtat taacccctgg
    76681 cgctggacgg cagtaaaggt acaggtttat cgccgctggc gattgctggc ctggtcgcag
    76741 ttggcgtggt ggcactggtg ctttatctgc tgcacgccag aaataacaac cgtgccctgt
    76801 tcagtctgaa actgttccgt actcgtacct tttcgctggg cctggcgggg agctttgccg
    76861 gacgtattgg cagtggcatg ttgcccttta tgacaccggt tttcctgcaa attggcctcg
    76921 gtttctcgcc gtttcatgcc ggactgatga tgatcccgat ggtgcttggc agcatgggaa
    76981 tgaagcgaat tgtggtacag gtggtgaatc gctttggtta tcgtcgggta ctggtagcga
    77041 ccacgctggg tctgtcgctg gtcaccctgt tgtttatgac taccgccctg ctgggctggt
    77101 actacgtttt gccgttcgtc ctgtttttac aagggatggt caactcgacg cgtttctcct
    77161 ccatgaacac cctgacgctg aaagatctcc cggacaatct ggcgagcagc ggcaacagcc
    77221 tgctgtcgat gattatgcaa ttgtcgatga gtatcggcgt cactatcgcc gggctgttgc
    77281 tgggactttt tggttcacag catgtcagcg tcgacagcgg caccacacaa accgtcttta
    77341 tgtacacctg gcttagcatg gcgttgatca tcgcccttcc ggcgttcatc tttgccagag
    77401 tgccgaacga tacgcatcaa aatgtagcta tttcgcggcg aaaaaggagc gcgcaatgaa
    77461 gttctggcga cccggtatta ccggcaaact gtttctggcg attttcgcca cctgcattgt
    77521 cttgctgatc agtatgcact gggcggtgcg tatcagtttt gagcgtggct ttattgatta
    77581 catcaagcat ggtaatgaac agcgattaca actgttaagt gatgcgcttg gcgagcagta
    77641 tgcgcagcat ggcaactggc gcttcctgcg caacaatgat cgctttgtct ttcagatcct
    77701 gcgttcattt gaacacgata attcggaaga taaacccggc ccgggtatgc caccgcacgg
    77761 ctggcgtacc cagttctggg tggttgatca aaacaacaaa gtgctggttg gtccgcgagc
    77821 gccgattcca cctgacggta cacggcgacc cattctggtc aacggtgcgg aagttggcgc
    77881 ggtgatcgcc tcccccgttg agcggttaac gcgcaatact gatatcaatt tcgataaaca
    77941 acagcggcaa accagctggt tgattgtcgc cctggcaacg ttactcgcgg cacttgccac
    78001 ttttctgctg gcgcgcggtt tactggcacc ggtaaaacga cttgtcgatg gcacgcacaa
    78061 actggcggcg ggcgatttca ctacccgcgt aacgcccacc agtgaagatg aactgggcaa
    78121 actggcgcaa gacttcaacc agcttgccag cacactggag aaaaaccagc aaatgcggcg
    78181 cgattttatg gccgatattt ctcacgaact gcgtacgcca ttagcggtgc tgcgcggtga
    78241 actggaagcc attcaggatg gcgtgcgtaa attcacgccg gagacggtgg cgtctttaca
    78301 ggcggaggtc ggtacactga ccaaactggt tgacgatctc catcagttgt cgatgtctga
    78361 tgaaggcgct ctcgcctatc aaaaagcacc ggtagatttg atcccactgc tggaagtggc
    78421 gggcggcgca tttcgcgaac gattcgccag tcgtggcctg aaactgcaat tttccctgcc
    78481 agacagtatt accgtatttg gcgatcgcga ccgtttaatg cagttattca ataatttact
    78541 tgaaaacagc ctgcgctata ctgacagcgg cggcagcctg aaaatctctg ccgagcagca
    78601 cgacaaaacg gtgcgcctga cctttgccga cagtgcgcca ggtgtcagtg acgagcagct
    78661 acaaaaatta tttgaacgtt tttatcgcac cgaaggttcc cgcaaccgcg ccagcggtgg
    78721 ttccgggctg gggctggcga tttgcctgaa cattgttgaa gcacataatg gccgcattat
    78781 tgctgcccat tcgccttttg gcggggtaag cattacagta gagttaccgc tggaacggga
    78841 tttacagaga gaagtatgac cgaattacca atcgacgaaa acacaccacg tattttgatc
    78901 gtggaagatg aaccgaagct ggggcagttg ctcattgatt atctgcgtgc tgcgagctat
    78961 gcgccgacgc ttatcagcca cggcgatcag gtactgccgt atgtgcgcca gacaccaccg
    79021 gatctgatcc tgttggatct gatgctccct ggcaccgatg gcttgacgct gtgccgggaa
    79081 attcgtcgtt tttctgacat tcctatcgtg atggtgacgg caaaaatcga agagatcgac
    79141 cgcctgctcg gactggagat tggcgcagat gactacatct gcaagccgta cagcccacgg
    79201 gaagtggtag cgcgcgtcaa aaccattttg cgccgttgca aaccgcagcg cgaattgcag
    79261 caacaggatg ccgaaagccc gttgattatc gacgaaggtc gttttcaggc ttcatggcgc
    79321 ggtaaaatgc ttgacctgac acctgcggaa tttcgtctgt tgaaaacgct ctctcatgaa
    79381 ccaggaaaag tgttctcccg cgagcaattg ctcaatcatc tttatgacga ctaccgcgta
    79441 gtaaccgacc gcaccattga cagccacatt aaaaacctgc gccgcaagct ggaatctctc
    79501 gacgccgaac agtcatttat ccgcgccgtt tacggcgttg gttaccgctg ggaagccgac
    79561 gcctgccgca tcgtttagtt ttagcgacat gactttgtta gccggagatg gcgttcagac
    79621 cagatccggc aacattatcc cacgcatggt cagcaaactg acattatctc tccgccctgg
    79681 caggcatcag aaaatcgctc atactttaat cggtaaacag cacctttaga tgctgttttc
    79741 gatacgcaat ttcaatcaag gagtcattat ggctggttgg tttgaactca gtaagagcag
    79801 tgataatcag ttccggtttg tgctaaaagc gggcaatggt gagactatcc tcaccagcga
    79861 gctgtataca tcaaaagcct ctgcggaaaa gggcatcgcg tcagtgcgta gcaacagccc
    79921 gcaagaagaa cgctatgaga aaaaaacggc aagtaacggc aaattctatt tcaatctgaa
    79981 agccgccaat catcaaatta tcggctccag ccagatgtac gccaccgcgc aatctcgtga
    80041 aaccggaatt gcctccgtta aagccaatgg cacaagccag acggtgaaag acaatacgta
    80101 attacgatgc cgggcgtggg ttgttggcgt ccggctttat tttctctcat cacagagtta
    80161 ctatccctca agaaattatt aaccatgaaa tgagttttct cctcataact gataaggaaa
    80221 attatgctca aaggattgcg tacattattt tcacgcaggg ttttgtttaa cgtcgaaatg
    80281 aataattctg ttgactgtga attacttctc atccagcaac aactccaggc attgatagcc
    80341 gaaccaggca attatttagc acatgattgt gatctcaacg atactctggt tctttgccag
    80401 cttacccatc atcacaatgg atatatacga gaaaaggccg tgcagtatct ggggcacaaa
    80461 gaggatgttg cggctataga agaattatta cttgcagcta atgactgggt aaaagaggtt
    80521 cgccttgctg caaccatagc attacgtcat ttaatgaagg ataagaatgc agcggcattt
    80581 gccgttaatc tacccatgat acgtaacctt ctccaatgcc agcgttacga tcaccgtgca
    80641 tttgtagacg agatacttag atatttattg acagaaaata accgcccaca attaacgtat
    80701 tggcttactt gccctgataa aaagctctcc cgcgcggtat tacaaacgct gattgaatac
    80761 ggttacttta atgatgaatc ttcactgctt tcaatactcg ataaacccga tgagggtttg
    80821 cgaatgctgg cgaccaccca ctggctgcgt caacaattac cattaagcga agcggtatta
    80881 actcgtctgt taaaagaccg ctggccgcgt attcgacaag caacgttatt tagcctcact
    80941 gaccgagcaa tagaaatgcc tccggcgttg cacagcacat tactgctgga taacaatatg
    81001 ttgatccgcc tacgcgctaa aaatatgctt cacgaagtca tggatgttcc gcaattctgg
    81061 cgtcatgttg tcacttctgc ggaatatact ccctcacagc gacgggccgc tttatacggg
    81121 ctggattcca ttcatgatcc caatatttta aaactggcag aatggggatt atcacagaat
    81181 gtattcccac tgcgtttagc cgctatgcac attcttgcaa aagctaatcc tcgttgtggc
    81241 gtcaaagaga ctattctgac cacgctggct aacccggacg ccgccgggtt gcgatttatg
    81301 gttaacatct gtgtatggtg tcgcgttccg ctcacgttcg aggaaatacg tcagttgcag
    81361 gaaaacgcgc cgtcagttaa acatgcttgc gcatattgtc ggctgtatca taacttgaac
    81421 aaatgggacg gtttaattct tcttcttcaa tcgcaacaca agctaactga agaatttgca
    81481 ggtaaacagc tcgcgatatg gcaacgcaat ttcaatcttt cgggcattca accgaatgct
    81541 cttcagcgtc agcaacttca ggcgcttttt acccgcaatc cggaacttca caacagatta
    81601 tggggttaca ttccttttaa ataacttcga attatagact tacgatgaca aatgtacctg
    81661 ctgacgagcg gaaccaaaac gaaacaatac gtgaagcttt acgcttgcta cgagaaaaac
    81721 ttgccgaggg actacgcagt ggcgaagccc aaccgtggga aaaggatctg tttttacata
    81781 aagtgaaggc cggtaacaaa taaatccccc agtcttttcc ctcacatttg cactggagcc
    81841 aaccccgccg attgcgctac aatgcccgcc cttaaagtgg gggcactccc ctaaccgctt
    81901 catcaggtga agcggatctg acctgtcatc agaacgagag aattatgttt aaaccggaac
    81961 tcctttcccc ggcgggaacg ctgaaaaata tgcgttacgc tttcgcttat ggcgcagatg
    82021 ctgtttatgc gggccagccg cgttactccc tgcgtgtgcg caacaacgaa ttcaaccacg
    82081 aaaatcttca gctcggcatc aatgaagccc acgcgctggg gaaaaagttt tatgtcgtgg
    82141 tcaacattgc accgcacaac gccaagctga aaacctttat ccgtgacctg aaaccggtgg
    82201 tggaaatggg gccggatgcg ctgattatgt ccgatccagg gctgattatg ctggtgcgtg
    82261 agtacttccc tgaaatgccg atccacctct cggtgcaggc taacgccgta aactgggcga
    82321 cggtgaaatt ctggcagcaa atgggcctga cccgcgtgat cctctctcgc gaactgtcgc
    82381 tggaagagat tgaagagatc cgcaatcagg tgccggatat ggagatcgag atcttcgttc
    82441 acggtgcgct gtgcatggcc tactccggtc gctgcctgct ctctggctat atcaacaagc
    82501 gcgatccgaa ccagggtacc tgcaccaacg cctgccgctg ggagtacaac gtccaggaag
    82561 ggaaagaaga tgacgttggc aacatcgtac acaagtacga gccgatcccg gtgcaaaatg
    82621 ttgagccgac gctaggtatc ggcgcgccaa ccgacaaagt gtttatgatc gaagaagccc
    82681 agcgtccggg cgagtatatg accgcgtttg aagatgagca cggcacttac atcatgaact
    82741 cgaaagatct gcgcgccatc gcccatgtag aacgcctgac caaaatgggc gtgcattcgc
    82801 tgaaaatcga aggccgtact aaatctttct actattgcgc acgcaccgca caggtttatc
    82861 gtaaagctat cgatgatgcc gctgcgggca aaccgttcga taccagcctg ctggaaactc
    82921 tggaaggtct ggcgcatcgt ggctataccg aaggtttcct gcgtcgtcat actcacgacg
    82981 attatcagaa ctacgaatac ggttattcag tttctgaccg ccagcagttt gttggtgagt
    83041 ttaccggtga gcgcaagggg gacctcgcag cggtagcggt gaaaaataaa ttctccgttg
    83101 gcgacagcct tgagctgatg acgccgcaag gcaacattaa ctttaccctt gagcacatgg
    83161 aaaacgccaa aggtgtagcg atgccggtcg caccaggcga tggttatact gtgtggctcc
    83221 cggtcccgca ggatcttgaa ctaaattacg cgctgctgat gcgtaatttc tccggggaaa
    83281 ccacgcgtaa cccacacggt aagtgattaa tttcgattat ttttcccgga tggaaaattc
    83341 ttagaaaccg atcacataca gctgcattta ttaaggttat catccgtttc gctgaaaaac
    83401 ataacccata aaatgctagc tgtaccagga accacctcct tagcctgtgt aatctccctt
    83461 acacgggctt attttttatg cataagccct atccctggtc accgtcttcc attgaccaca
    83521 tcgatagaat ctcccttcat agcacgatgc ctttcacgta acggcatcgt gctcgcacag
    83581 gttccggcta agcacaacca gaacgcgcat gtttgatgct taccaaaaaa tattctcact
    83641 ctccacattt gaatgtcaga cgagcgacac catgtaatcc tacaccttct gtcttcagct
    83701 caactatttg catttttttg ccctgagtaa cacagaaatg agttgcatca ttttttacta
    83761 tattttctgc accagatatt ctactcctgg ctaaagaagc ttcggcttcg gtgtagtatt
    83821 ggttatcgag tttacgctga atattacttt tatatgcaag accaaattta ccgatacttg
    83881 tctcatcatt atgcacagca caaccagaca taataaaaat actaattaat gatatagcag
    83941 ctatcttttt catctcacct ttccccatta aataccaacg acactctcta gtgtttaaat
    84001 ataataatag ctgatcatta tatttgaata ggattataat aaatgttctg tacaacattt
    84061 cctacataag taggacttac agacatgaag gccctttcca ggtaactcca tggggcttta
    84121 atatatttgg aatagtatat ttaagatgcc actgtttggt tgaatattag gcatatgctc
    84181 ttttttgaaa tttatcggtg gctaccgtta atattcgctg ttcccattgc aagctcctgg
    84241 tggtaaccac tgaatcctcc atacttgaac tgacttttta tcctccgact ttcatcctgt
    84301 tctgactcca ccttttcttt tctgctctac actatctaca gaccaatcat aaaggcacat
    84361 acgatcatgg cagaatttcc cgccagctta ctgattctta atggcaaaag tactgacaat
    84421 ctacccttgc gcgaagcaat tatgctgttg cgtgaggaag gaatgacgat ccatgtgcgg
    84481 gtcacctggg agaaaggtga tgccgcacga tttgtagagg aggcccggaa gttgggcgtc
    84541 gcaacggtaa ttgccggtgg tggcgatggc accattaatg aagtttctac ggcgttgatt
    84601 cagtgtgagg gggatggcat acccgcgctg ggaattttgc cattaggaac cgccaatgat
    84661 tttgccacca gtgtagggat tcctgaggca ctggataagg cgctgaaact ggcaattgcc
    84721 ggtaacgcca ttgcgataga tatggcgcag gtcaacaaac aaacctgttt tattaatatg
    84781 gcgacaggcg gatttgggac gcgtattacc acagaaacgc cggaaaaatt aaaagccgcg
    84841 ctgggtggcg tctcttacat cattcatggc ttaatgcgca tggatactct gcaaccggac
    84901 cgttgtgaaa tccgcggtga aaactttcac tggcaaggtg acgccctggt attggtattg
    84961 gtaacgggcg tcaggccggt ggcggtcagc aattgtgtcc gaacgcgtta attaacgatg
    85021 gcttgctgca actgcgcatt tttaccggcg atgaaattct tccggctctc gtatcaacct
    85081 taaaatctga cgaagataac ccgagtatta tcgaaggcgc ttcgtcgtgg tttgatatac
    85141 aagccccaca cgaaatcact tttaatcttg atggcgaacc gttgagcgga caaaactttc
    85201 atattgaaat acttccggcg gcgttgcgtt gtcgattacc accagattgt ccattattgc
    85261 gttaatcaaa ctattctctc ttgaaccagg gagaatccga aatgccggat gcggtgtaaa
    85321 taccttatcc ggcatacaga acaatactac accgtaatta attttacccg tgtcttctgc
    85381 aatgccagtt tatccacctc tgatacagca tcatcggtaa taataatgtc aattttttcg
    85441 attggcagta cctgattaaa accgcgacgg ttaaatttcg atgaatcgag aacggcaatc
    85501 actttattag cggctgtgac catcgcaccg ctaacggaat aaccctcatt aaaggtcgta
    85561 ataccattaa ccgcatcaat accatcagca ccgacaaaca ttaaatcggc attaatatcc
    85621 tgcagggaac gttcagcaat agatccatgc atagatcgcg ttttatggcg gaccgtgcca
    85681 ccgcagacga ccagagtaat gtctttattt tcggaaaggg caaacgctgc cgggagactg
    85741 ttggtaatca ccgtgatatt tttagcggtc attaatcctt cggcgataag cattgtggta
    85801 cttccgctgt cgagaataac ggtcatccct tcatggatca ttttgactgc cgcctgcgct
    85861 attctgtttt ttggcgcgct ggcgagctga aatcgctctt taaacccgac ttcctgggtc
    85921 tcggtttcac tattaccgga cattattttc gccgcaccgc catgaaagcg cgtaaccacg
    85981 cctttttgtt cgagaaagcg caaatcggca cggattgtcg cttccgaggc agcaaatact
    86041 cccgccagat cctgaacaag cacggttccc tgttcattca ctaattggat gatcttattc
    86101 cttcgctcga atgaattcat cgtcatttac ccatattcaa ttgtggctag tgtaaacgaa
    86161 gggggaccat tggtgaatga tctgttttgc acaataccgg gccagcatca cgctggcccg
    86221 cggtttcatg gaatgagcaa cactttgccc ggcatggcat tacgagcgat gtcacgcacc
    86281 gcctgggtga agctttcaaa gcttccacgg tgagcgatta atggctccag gcttaactta
    86341 cgttctgtca gcaaccggct cgccgtttcc cactcctgcc ccggccaagg gctggaatag
    86401 ttcatccaac tgccgataac cgtcagctct ttacgcaata ttttgccaaa cgttgccgat
    86461 gttaaatgca gatcctgatg caacgtgccc accagcgcca gttgggcatg aggaccggca
    86521 atctctaccg ccagttcgac agtttgcggt acgccagccg tctcgaggat aagctgatta
    86581 aaacgcagtt cgcgtaaaac gctctgcatt tgcggcgcgc tcatttcgct actgttaaat
    86641 gtttgcatcg aaccgaaaga ttttgccagt gccagttttt ctgagctaat gtcgatagcc
    86701 gtcacactct ttgctcccag cgcgacagcg cactgaatag ccagcaggcc aatggttccg
    86761 gcaccaataa taataacgtt tttattctca caaccttgcg ctaaatgaaa agcatgcaga
    86821 ccaacggtaa tcggctcaat aaaagcccca tcctcaatag gcatatccgt gggtagagca
    86881 aagacatttt ttcgcttaac gacaatatat tcagcaaatc caccatcacg ccgcgagcca
    86941 ataaaatcat attttgcgca ctgggaataa aaccctttca gacactctgg acaagtaaaa
    87001 cagggtaata acggcacaca ggcaaccgca tcgccagggt gtaaatcatc aacaccggat
    87061 cccaccgcat caatatagcc gctaaattca tggcctaacg ttattggata ataatgtgca
    87121 ccatttttaa atatcctggg taaatcggaa ccacataagc ccgagctggc aatttttacc
    87181 cgcacctcat cctgatgttt aatttcagga atgacgcttt ctgcaacgcg cacgatacca
    87241 tcagtatcat tcaccactga tttcataaaa actcctgatt gttaaggggg ataaactccc
    87301 cctcagttaa aaattattct gcgagaacgg ctttctcttg tttaataaaa ccacgcgctc
    87361 tacgccaggt aatgaaaata ccggtcagat aaattgcgcc gataataatg aaaccgggaa
    87421 tattttgcgg ggagaaaacc tgaatcagta accaggtaat gggagaaccg ccctgatcca
    87481 ttgaagccac catacccccg gcttttaacg ccccagcatt agccgccagt tgggtgtgca
    87541 aaccaatagt ttgcgtcgcg atccacagag tgatgctcat gatgatgaca cccgagatta
    87601 aggtgcggaa cagatttcca cgatgcacgg cgactgccat cgccacaaag aagccgatgg
    87661 tggcaagatc gccaaacggc agtacctgat tacccggaac acaaacagca attaaaatgg
    87721 tgagcgggat aaaaatcagg cttaccgata ccaccgccgt atgccccagc agtaatgcgg
    87781 gatccaggcc aatcaggaac tcctgaccgc cgaacttcgc ctgtaaacga ctacgggcct
    87841 gcttagcgat gggcgttaaa ccatccatga tgggtttaat cacccgtggc attagcagca
    87901 tcactgccgc cgtttttacc gccagctgca atacaccttt gacatcgtaa cccgcgagga
    87961 tgccgataat cagccccatc acaaaaccca cggtgacagg ttcgccaaaa gggccaaatt
    88021 tgcgctgaat atcatcggcg ctaaatttaa ttcggttaac gcctgggatt ttctcgatga
    88081 tagcatcgac cagcaccgca atcggcccca tatacgccga cgtaccgtgc ggaatagcaa
    88141 taccttccag ctcaaagaaa tttcgggtat cgcgggcaaa ccagtcgccg agcttataaa
    88201 caaacgccgc gtgaattacc acacccgcca tccctatcat ccatgaaccg gttgccagat
    88261 gcagcaacgc gccggtgaaa gtcatatgcc agatattcca gatatcaaca tttaccaccc
    88321 gcgtcatacg ggtcagtaac atcgccacgt taaccagaat agcaatcgga atcgccacca
    88381 gcgcaatttg cgacgcccag gtcattggtg aagagcccgg ccagccgaca tcgaccacat
    88441 gcagattcag gtcgaaattt tccgccatcg ctttcgccgc cggaccaatg gaatccagca
    88501 ttaagccaat cacaaggcca atgccaacaa agccaatccc tatatgaaga cccgctttaa
    88561 agcaatcgcc tgccttcatg cctaatattt tagaaaaaat aatgatgaca atcggcagca
    88621 tcaccgtagg gccgaggtcg agaatataac gcatgacttc tgaaaacata ggtcacccct
    88681 gtaagatagt cagaatttta ttttgtaatg cttcgatacc gacaccagaa acaaaaggca
    88741 tgccgtgaac taacggaata tcgccaaaac tacgatccac cctggcagta gtgcatatca
    88801 aatgcacgcc atccatatag gtttctattt cattaacccg acactggatt aattcaacag
    88861 gaatattatg attctgacac aattctttaa tttcttccgc cgccatcgta gaggtcgcaa
    88921 ccgcgcctcc gcaagcgaca ataatcttgc gtttcataaa tagtcctttt tattgttaca
    88981 gagggattta ttcgtctgaa tctaaaacat actttgtgaa gtattccttt aactgggttt
    89041 caggaagagt gattagtgtc tcgacgatat cgggctgttg taacttgcca aataaacagc
    89101 gtaaaagttt caattgctgc tgcggatttt ccacaatcaa cgcaataacc aacgatacct
    89161 ccacgtcgtt atcatcatcc gcttgctgaa aatgaacttt atttgttggc cttaacagat
    89221 aaatggctga cgacttagca tgaatcgcct cacaatgcgg tattgcaatg gcgtgctgct
    89281 caagcattat cccggtaggg aattctgctt ctctggcaat taatgcctgt ggccaggtat
    89341 catgaaccac acctttggcg agcatctcat taccgatatg ggttaaaact tcgctacgat
    89401 cgacaaaaga aattccgcta cgaacaaaca ggttagtcat ataccgtcct tattccgcac
    89461 agccgtagcg ataggcgcgc aaaacatcat aaattttatc cataatcagc taatgcggta
    89521 ttgctgataa ttccccggac tgaatgcgtt caaattgttt gggaagatac tgactaatca
    89581 tgcccagtgg gatgtccacg ccttcaagat tcaccatcat cgtttcgacg ctatttttaa
    89641 tccgactatg cggccagtaa taacgaatac gatccgacag gctgtaacga atatccagta
    89701 atgaatcgtt aaaacccgta cgataatatt ttttccagta ttgcggttcg tcgagcatca
    89761 cttcttcaat taccgccagg caaccgctgc gattttcagg ggcgataagt tcctgctcaa
    89821 tttgtgccag tgcaaatatc gcctcgcgta aagcaaaggt taatgcggga ccgactttca
    89881 atattgcaaa gtgatcgcgg actaattccc aataagccgt ccgggtctgg taatcggtag
    89941 aatgtgcttc ataaaccatt cgggtgtttt ctatccattg cgccagcggc tgcgcttcct
    90001 gcggctgata atggataata ttgctgtgat caaattccac gcccggctgc accacgatgg
    90061 caatcacgcg tgttaacgcc tctgtcagcc cacggacaat aaaggccttt tgatgcgtac
    90121 gtaaagtatt ggcggcatct tcaacatggg tgatgtgtac tgactgaatg gcgctggcct
    90181 caccgcccgg aaccggaact tcggtgccaa tgacatagct cagttgctca cgctggcaat
    90241 ctgtcgccac actttccgca gcaaagcaaa gcacagcagc tcgttccgca accgtttctg
    90301 gtgctaacgg tatgggatcc cccgcgcagg acattgacgc atcaagatga attttactga
    90361 agccggcacg aacatattcc tttaccagct cgacggattt ttccatcgcc gcatccgcat
    90421 tttcttgctg ccagcagttt ggccccagat gatcgccgcc gagaataatg cgttcgcgtg
    90481 caaacccaac tttatcggca atcgtaaaaa caaattcgcg aaagtctgcc ggtgtcattc
    90541 cggtataacc gccaaattga ttgacctggt ttgacgttgc ttcaatcagc actttgcgcg
    90601 tgctgttgcg atcaaatgcc agcgccgctt cgataaccaa cggatgggca gaacagactg
    90661 aacatatgcc gatatgttca ccagctttat gccgggcaat taacgttttc atgttttttc
    90721 cttattaaat ggcaggtgcg ttatgccctg ccctcgcagc cacaatcggc aatcactttg
    90781 ctcaccacat cgcgcattgc ggatttagcc gactgcaaat aatcccgggg ctcggtcgct
    90841 tcagggtgct cggtcaggta attttttaac gcctgcgaga aggcattttt cagctccgtt
    90901 gcaacgttga ttttgcatat ccccagtttg atggtttgct gaatatcctt agtcgataac
    90961 cctgacgcgc catgcagcac cagcggtaag ttcacccact ggcgaatgtt ctccagtcta
    91021 gaaaaatcaa gcgccggtgc gctggcatac atcccatgag ccgtgccgat ggcgaccgcc
    91081 agggaatcaa ttccggttgc ctcggcaaat tcacgcgcct gagcggggtt ggtataaaaa
    91141 gcatcggctt cattgacttg cacatcatct tcctggccgc caagttgccc cagctccgct
    91201 tcgacgctga catcaaagcg atggcaaaaa tccaccacct ctttgacccg tgaaatattt
    91261 tgcgcaaaag gcaaatgcga ggcgtcaatc atgactgagc gcacgccaga acgaaccttc
    91321 tgagcgatat cgtcaaattt cgtgtgatgg tcgagatgaa ttgccagtgg atggtgatat
    91381 tgcttcgcca tcgcgctgac cagcgccaac agattttctg taccagcatg agtaaatgtg
    91441 ccaggcgttc cggcgatgat gaccggcgca tgcaggttgg cagcggtttc caccaccact
    91501 tgcatcgttt cgagattgtg aatattgaat gccggaaccg cataaccgcc gcgctgtgcg
    91561 ttgttcagca tctgctttgt cgataccacg tgcattttca tatcctgtcg tttgttttcg
    91621 ttttcaaaat ataatgaaat tatttgtttt taaatatcga gataacgatc acaaaaacga
    91681 caatatgaaa attattcgag gagtgaaagg caaaaaaacg gcctcccgat agggaagccg
    91741 tagcaaagtg cgcgtgtttt tatgccggat gcggtgtaaa catacgtggc agtgctatgt
    91801 aggcatgata agacgcttcc gcgtcgcatc aggcataggt tgccggatgc agtgtaaacg
    91861 ccttatccgt cctacggggt ggtgttgttc gtataaggcg tatcaggcaa tagtaatttt
    91921 gctatcgaga taaacgtcct gcacggcgtt aatcagtttc acgccgtcag ccatcgattt
    91981 cttgaacgcc ttacgtccaa gaatcagccc cattccgcca gcgcgtttgt tgataaccgc
    92041 agtacgcact gcatcactga ggtcagtttc accgcctgca gcaccgccgg agtttatcaa
    92101 cccagcccgg cccatatagc agttagctaa ctgataacgc accagatcaa tcgggttttc
    92161 gctggttaac ttgctgtaca cgcgatcgtc ggtataaccg taattaatcg ctttatagcc
    92221 gccgttattt tccgccattt tttgtttgac gatatctgcg ccgatggttg ccgccagatg
    92281 gtttgcctga ccggtcaggt cggcggaaac atggtaatca acgccatctt tcttaaaggc
    92341 ggagttacgc aaataggccc acagcacggt caccatgccc agctcatgcg cacgttcaaa
    92401 agccgcagaa atttcttcaa tctggcgacg tgactcttcc gagccaaaat agatagtcgc
    92461 accaaccgcc accgcgccca tgttgaaagc ctgctccacg ctggcataca gcgtttgatc
    92521 gtaggtattc gggtaactta gcgtctcgtt gtgattaagt ttgacgagaa atggaatgcg
    92581 atgcgcatag cgccgcgata ccgacgccaa cacgccgtaa gttgatacca cacagttaca
    92641 gcccgcttcg atcgccagtt caacaatgtt tttcgggtca aagtagagcg ggttagcagc
    92701 aaatgaagct ccggcagagt gctcaacgcc ctggtcaacc ggcagaatag aaagatatcc
    92761 tgtgccagcc agacgcccgg tgttgtacaa cgtctgcata ttacgtaaca ccgctggcgg
    92821 gcgattattg tcaatcatta cgcggtctac gtagtcatgt ccggggagat aaagctggtc
    92881 agaaggaatt gtcatacaac ggtgctgtaa aaggttgtcg gcgtctttgc caagcaactg
    92941 cgcaatatct gtcattacta tgctcccgta aattccgatt ggatatcggc tatggattgt
    93001 cctggcccgc cttttgcggg caatcataat cctggtcgtt acgggcgagt ttttccatct
    93061 tttggatgtt ttttcagcgt tttctgttgg ctcgattcat cagaaaaaat gttagcgcgg
    93121 tcaagttttc accgtaaaga tatttaaaag gtattattaa gtggtattgt catcgcgtac
    93181 cttacattac ctgtcatgaa ggaattaaaa gatgaaaaca acagcaaagc tgtcgttcat
    93241 gatgtttgtt gaatggttta tctggggcgc gtggtttgtg ccattgtggt tgtggttaag
    93301 taaaagcggt tttagtgccg gagaaattgg ctggtcgtat gcctgtaccg ccattgcggc
    93361 gatcctgtcg ccaattctgg ttggctccat cactgaccgc tttttctcgg cgcaaaaagt
    93421 gctggcggta ttgatgttcg caggcgcgct gctgatgtat ttcgctgcgc aacagaccac
    93481 ttttgccggg ttctttccgt tactgctggc ttactctcta acctatatgc cgaccattgc
    93541 gctgactaac agcatcgctt ttgccaacgt gccggatgtg gagcgtgatt tcccgcgcat
    93601 tcgtgtgatg ggcactatcg gctggattgc ctccggtctg gcatgtggtt tcttgccgca
    93661 aatactgggg tatgccgata tctcaccgac taacatcccg ctgctgatta ccgccggaag
    93721 ttctgctctg ctcggtgtgt ttgcgttttt cctgcccggc acgccaccaa aaagcaccgg
    93781 caaaatggat attaaagtca tgctcggcct ggatgcgctg atcctgctgc gcgataaaaa
    93841 cttcctcgtc tttttcttct gttcattccc gtttgcgatg ccactggcgt tctattacat
    93901 ctttgccaac ggttatctga ccgaagtcgg catgaaaaat gccaccggct ggatgacgct
    93961 cggccagttc tctgaaatat tctttatgct ggcattaccg tttttcacta aacgctttgg
    94021 tatcaaaaag gtattattgc ttggtctggt catcgctgcg atccgctatg gcttctttat
    94081 ttacggtagt gcggatgaat atttcaccta cgcgttactg ttcctcggta ttttgcttca
    94141 cggcgtaagt tacgattttt actacgttac cgcttacatc tatgtcgata aaaaagcccc
    94201 cgtgcatatg cgtaccgccg cgcaggggct gatcacgctc tgctgccagg gcttcggcag
    94261 tttgctcggc tatcgtcttg gcggtgtgat gatggaaaag atgttcgctt atcaggaacc
    94321 ggtaaacgga ctgactttca actggtccgg gatgtggact tttggcgcgg tgatgattgc
    94381 cattatcgcc gtgctgttca tgattttttt ctgcgaatcc gacaacgaaa ttacggctat
    94441 caaggtcgat gatcgcgata ttgcgttgac acaaggggaa gttaaatgaa aacagaacgt
    94501 attctcggtg ctctttatgg gcaggcgtta ggggatgcga tggggatgcc ctccgagctt
    94561 tggccacgca gccgcgttaa agcacacttt ggctggattg accgttttct gcctggacca
    94621 aaggagaata acgcggcctg ttattttaac cgcgccgaat tcaccgacga tacctcgatg
    94681 gcgctgtgtc tggcggatgc gttgctggaa cgtaaaggca agatcgatcc ggatctgatt
    94741 gggcgtaata tcctcgactg ggcgctgcgt ttcgacgcct tcaacaaaaa cgtgctaggt
    94801 ccgacctcga agattgcgct taacgccatt cgcgacggta aacccgttgc tgaactggaa
    94861 aacaacggcg taaccaacgg cgcagcgatg cgcgtctcgc cattaggttg tttgcttccg
    94921 gcgcgcgatg ttgattcctt tattgatgat gtggcgctgg cgtcgagccc gacccataaa
    94981 tccgatctgg cagttgcagg tgcggtagtc atcgcatggg cgatttctcg tgctattgac
    95041 ggagaaagct ggtcagcgat tgttgattca ctgccttcaa ttacgcgaca tgcccagcaa
    95101 aaacgcacca ccacgttcag cgcctcactg gcggcgcggc tggagattgc gctgaaaatt
    95161 gtgcgcaatg ccgacggcac cgaatccgcc agcgaacagc tttaccaggt cgttggcgca
    95221 ggtaccagca ctattgagtc cgttccgtgc gccattgcgc tggttgaact ggcacaaacc
    95281 gacccgaacc gttgcgccgt cctctgcgct aaccttggcg gcgatacaga caccatcggt
    95341 gctatggcga cggcaatctg cggcgcgttg catggcatta acgctatcga tcctgcgtta
    95401 aaggcggagc tggatgcggt aaatcagctt gatttcaacc gctatgccac agcgctggcg
    95461 aaatatcgtc aacaacggga ggcggtatga gcggcgctcg attacacacg ctgctgcctg
    95521 aattaaccac gcgtcagtcg gtgatggtcg tcggcgcggc ggtcattgac gtgatcgccg
    95581 acgcttatgc cctcccctgg cgtgggtgcg atatcgaact gaaacagcag agcgttaacg
    95641 ttggcggctg cgcactgaat attgccgtgg cgttaaagcg cctcggcatc gaagcgggta
    95701 atgccttgcc gctcggtcag ggggtatggg cggagattat tcgcaaccgg atggcgaaag
    95761 aggggttaat cagcctgatc gataacgccg aaggcgataa cggctggtgt ctggcgctgg
    95821 ttgagccgga tggcgaacgt acttttatgt cattcagcgg tgtggaaaat cagtggaatc
    95881 gccagtggct ggcgcgatta accgttgcgc ctggcagcct gctctatttt tccggttatc
    95941 aactggcctc gccctgcggc gaattgttag tggaatggct ggaagagctg caagacgtga
    96001 cgccgtttat cgattttggc ccacgtattg gcgatatccc ggacgcatta ctggcgcgga
    96061 tcatggcctg tcgaccttta gtgtcactca atcgtcaaga ggctgagatt gccgccgaac
    96121 gttttgcttt atccgcagag ataacaacac ttggcaagca atggcaggag aaatttgccg
    96181 cgccgttgat cgttcgtctc gataaagaag gcgcatggta tttcagcaac gacgcttctg
    96241 gctgcattcc ggcatttcca acgcaagttg tcgacaccat tggtgcgggc gacagtcatg
    96301 ccggtggcgt acttgccggg ctggcctctg gtctgccact ggcggatgcc gtattactgg
    96361 gcaatgcagt ggcgtcatgg gttgtcgggc atcggggcgg tgattgtgcg ccaacgcgcg
    96421 aggaactact cctcgcacac aaaaacgtat agatcgctgc gacagtggct aatgctgtac
    96481 tcaataggcc gttgctgttg gtcaagcgcc acttgcttga tcaccagcac cggtattttg
    96541 ctatctaact gaatatgtga ctgaaactcg gcatccggca tccgggcgct aacgcgggaa
    96601 cgcgtacgtt gtgggtaaat gtgctggctg cggaaatagt cataaagtga aatcccgatg
    96661 gcatcaacat catgaattaa atgcgccgga acccacgatt cctcaatcga taccgcttct
    96721 tcatcgacat agcgaatacg cttaagcaaa aagacatcac ttcctgcttc gaccgccagc
    96781 tgctgcgcga cttcttcggg acatttcacg acacgcttgt taacccatag cgtatcgggc
    96841 tttttcccgc gcaataccac ctgctgagaa aaacctcgcg cttctttcaa cgagtattcg
    96901 aagatgttgt tgatctgcgt gccgtaaccg cgcgaacgcg tcaccacacc ctcttcttcc
    96961 agcgcctgca tcgccttgcg caccgtaatg cgcgaaacgc cggttaactg acttaaatca
    97021 cgctcaccgg gcaaaatatt gccatgctcc agcaccccgc tgcgcacggc attttttacc
    97081 gtttcggcaa acttaatata aagcggcgtg ttatccgccg ctaaaatacg ctcgttcagt
    97141 tgggcaatca gctgggtatg cgcttgttcc atttgtcttg ttcctgccgg ggagtctggt
    97201 gggagtatat cactgcttct tatttaaggc gtttctttaa tcccatcaac gaatgcctgc
    97261 aactcctcca ccgtgccatt aaatacatta aaatccaccg gaccattgat gccatctacc
    97321 tgtccacggt cggaatgctg ccagaagcgc caggccatgc cgtcattgtc cggacgacgt
    97381 tgataatagt gagccaccca ccacggatat tcattgaaat agcccgccag attggtgtga
    97441 taaaaaacgg ctcctgagta aataatcggc ttttttcccg tacttttttc gaccattttt
    97501 agccactgac ttactcgttt gcgtaattct tttgccgata attttccccg ttcttctacg
    97561 tccagtaccg cagggaaatc gccttgtgag aaatccaccg tttgcagaaa taatcgtgcc
    97621 tgaaccggcg ctgctaccga cggggagaaa taatgatacg ccccgcgcag caggccattt
    97681 tcgcggctta gttgccagtt acgcgaaaaa tacgggtcca ccagcttttc gccttccgtc
    97741 gccttaataa aagcaaactg taagcggata ccgttgtcgc gcatttttgc cacccgctgc
    97801 cagtcgatcc gctcctgcca gcgagaaaca tctattccgt gaatggtgta actggcagga
    97861 atgcgaatag cgaaagattt aaccgggcga taaccgtaga aatggatgta gtctgtaatc
    97921 tgaactgctg tcgaatagaa aaaattcacc ttctgacgcg gataaattgc aacgatggaa
    97981 attagcccaa gagcgcataa tagagaggtg agtttttttc gactggtaat tcttagctgc
    98041 attggtttca tccctgaatg tcagtgccaa aggctgacaa taaccaaagc agctatagta
    98101 cggtgctcac caccaggcgt ggaagtggtg aaccggacca ataccgtgac caacttccag
    98161 cgtgtcggcc tgggctaatg ctgatgaaag ccagctttta gcctcctgta cggtgtcagc
    98221 ccagtttgta tggcgcgggc gtagtgcagc caacgccgca gagagcgtac aaccagtgcc
    98281 gtgggtgttt ttggtcataa tgcgcggtgc ggtaaaccgt tgttcaccct cgcgggtaaa
    98341 cagccagtcc gggctttgct catcatccag atgaccacct ttcattagca ctgcgccaca
    98401 gcccatcgcc aacagcgatc gcccttgttc cagcatttcc tgttcggtgc gcgcgtgtgg
    98461 cgcgtcgagc aaggcggcag cttcgggcaa gtttggcgtt attaatgaaa cctgtggcaa
    98521 taatcgactg cgcagcgtag caaccgccga aggtgaaagc agcgggtcgc cgctttttgc
    98581 cagcataacg gtgtcgagta ccacgtattg gatctgataa cgttgcaacc gttctgccac
    98641 cgcttcaaca atatcggttt ccgccaacat accgatttta gtggtgtcga ttcgcacatc
    98701 gctgaacacc gaatcgagct gggcggcgac aaaatcagac tcaatgcgat acaccgactg
    98761 tacgccacgg gtattttgcg ccaccagtgc agtaataact gagcaaccat aagcgccaag
    98821 tgccgagaag gttttaagat cggcctgaat ccccgcacca ccactcggat cagtaccggc
    98881 aatcgtcaga gcgttaattc gtttcatgcc tgcacctcct gcgtcaattg ccagagcgca
    98941 tcaaggaaat gtggaacaaa actgcctggc ccctcgcttc tggcgactgc gcgttctccg
    99001 gcttgtttca tccagtgaca ggcagatgcg acattttcca gcgtatcgcc tggtaacgca
    99061 cagcaggcag cgacaaccgc cgataatgca cagccagttc ctaccacttt ggtcattaac
    99121 ggatcgccac cgtgaatacc aatgatacga tgtccatcgg taacataatc catctcgcca
    99181 gtgaccacga cgattgcgcc agtttcccgt gccagtgttt gtgcagcggg tatcgcgtta
    99241 gctgcggcgt cagtggtatc cactccccgt ccaccattag caatgccagc taatgccatg
    99301 atttccgaag cattaccacg tatagcggtt ggcttatgag gcagaagttc cagacaaaaa
    99361 cggcggcgat aatcgagtgc accaaccgct actggatcaa gcgtccaggg tgtttgagag
    99421 ctttttgctt gctcaacggc ggcacacatc gactgtgcgc gtagctgcgt cagcgtgcca
    99481 acgttaatca gcaacgcact agcaatagcc gcaaactgac tggcctcttc ggtttcgata
    99541 accatcgctg gcgatgcacc gagcgccagc aaggtattgg cagtaaaggt ttgcaccaca
    99601 tcgttggtca tgcagtgcac aagaggggaa tgttggtgaa aaaggtgtaa cgcgtgcgca
    99661 gattgcgctg aactctgcag gtcgacttgc atagtttgct cctgccataa cgtgaagaag
    99721 caatgacctg gtggtccgtg acttccctac gctggcatta tccagatcag gtaatacggg
    99781 tatttctcag ccttcacaaa gaagggcacc ccgagtcatt taaaacaaaa tcaaaagatt
    99841 gcgattaacg tcccgttaat ccctgttctg gatcatgcca gcgggaagcc aaagactcaa
    99901 ccctaaaaaa tcctctgtgt cccagtttgt gtctcacgtt gtggcccaca gataaatggc
    99961 aggcacaaaa aaaccgccca taaggcggct taagtaaatt attcagtcgt gaagatttaa
   100021 atgaaatcta ttttctgcat acgctttctt catgcagtcg aagtgctttt gccaattcca
   100081 attggaatgc aaaggaaaga cgggaacggc tgatcttgat accgtcaata atgatgtatg
   100141 tagggtaaac agtgaccatg cggcccaagt attggaagtg tttagggtgg tttactttat
   100201 cgttattcat tgtgtgccat ccgtctgggt gggggtaatc ccggcaacgg atgattgatc
   100261 taaaatcgat caaaatcaat aacttaacag atcaccaaat ccaggggggt gtacattggc
   100321 gagcctccct cagcctaacc tatacacgac cataaaatag gggcggattc cttccagttg
   100381 ggtgggaaaa tatctgggag tttggataca gtagccaggc agggtaacca gacccataga
   100441 tgagaatgtt tattattccc aaatatccag gcgaggggcc tgctgtggct ctctttacgc
   100501 gccgctgtgg cgtcttctct cctctttcta tacaatccca tagctaaccc attgcgaggc
   100561 ttacagagcg ttacagagcg tccgtgtgaa tattgcataa atgaaagtgg tgaaaggtcc
   100621 gatttggtca acttttagac aactatttaa catatgcgca acaggttaga cctgtaccct
   100681 ttcaataggt ccgcctcctg ggcgctgtgt acgccccata actgtggctc ttctgtaccc
   100741 atccgggagc cattccacag agtaaactgt aaaactgatc tgcctgtgag taacgccctt
   100801 ttcctgtgga taacttccac gcactaaccc cataaactcc ccttttgagg cgtccgcctc
   100861 ttcaggccct ttcttgtggc aaaaacacaa aaagggttta gggcggtggc taccgcccct
   100921 gtagatggga atgagtcgca ctcgaaagag ggattgagaa ccaattctca agtgataatc
   100981 gatctcattt gtgttcgaag ttttccccag aaaaataatt ttggggttaa gcatgtaaaa
   101041 tgctacacac ttgcactttg taatgataat taattgacca taaaaacaaa tagttagaag
   101101 cgctggggga gtcccactag ttacacaatt gattactttt tgagctaaaa ctgattcttt
   101161 taccgggtat acaatccatt tgatcgccct ttaccacata tttaaacgga tttaaagcca
   101221 tttatttagg gggttagcaa agtgttgatt tcatggttac agataacaaa aaagcccgcc
   101281 gggggttagc cgggggcctg tggttggggg tgtcaaacgt ggttagttcg gcccgccctg
   101341 cattagcatg ttgaaagcct gctgattatt gctctcaact tcagagcgta ccagatcctt
   101401 aacctatcca tcctgcactt tcacattaac gttcacgttt agcggctggt ttagccacgc
   101461 tggcggcgtc atcagtggat tacctgccat atcaacttta agctgtggcg ctgtaatcgt
   101521 cggcgtagga ggtacataag ttggattgga gtaagagctt acccaccctg ttttatctgc
   101581 tggtttggca aagtctggat tagtcggaag gtctggacta tggaggaaat cccacagttt
   101641 acccagcggg ctatcttttt tcagattgcc cccggcggtg gtgtcctgtc catacatggc
   101701 gtcgttagcg tcatgacctt atcccaggca taatccccac ctaccgaacc gaccgcaatg
   101761 ctccagccaa caggaccgcc agagagagcc gccgcgccgc ctaccttgcc aactttcgga
   101821 ccccgacccg gtttgtttgg cttgtcttta ccttccccac cagatccgcc agtagtagcg
   101881 gcttcaatgc caccaatagc ggcgatccct ttcatgaccc ccagtaattt ggttagtggg
   101941 ttaagcatgg tcaacaacca tttaaaggct acgcccaact tccagataga cccggcgaac
   102001 atagccaccc cggcggcgta tgctgccatt tcgccccagg ctttaagctg ctcaccagtg
   102061 atccccatct tgctggcgta atactcaata atgcggaagg tcaggatcac agtgtcatgc
   102121 aactctgtaa acgcatctgt ggcaccctca acgattttcc cggcaatatg cccgaacatc
   102181 tcaaaggccc caccagagcc gttaacagcg gcgctgatag cgtcgaaagc gctggttaat
   102241 tcgttgccga agccagaagc aaagaagatg ttcatcgcgt tctgcatact ggtttgcagg
   102301 cgctgccagc ttgcccggtt ggacttcata gccttatcca gagcgccgcc gttacgagct
   102361 gcggctttca tctgtttagc cacttccggg aggatgtcct tagagaacag cttcccttgt
   102421 tgcatcaggt caaacagatc cttttctgta aggttggttg tccctttcat ctggttgaga
   102481 gccttaacga acagacccac agcccccg
//
LOCUS       DAJVSY010000002        79461 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.002, whole genome shotgun sequence.
ACCESSION   DAJVSY010000002 DAJVSY010000000
VERSION     DAJVSY010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 79461)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 79461)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..79461
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.002"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            414..1616
                     /gene="proV"
                     /locus_tag="OQQ19_000095"
     CDS             414..1616
                     /gene="proV"
                     /locus_tag="OQQ19_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     ATP-binding protein ProV"
                     /protein_id="HCS1801870.1"
                     /translation="MAIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGV
                     KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELRE
                     VRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS
                     YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTI
                     VFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSA
                     KDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT
                     QQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCAVPVVDEDQQYVGIISKGMLLRAL
                     DREGVNNG"
     gene            1609..2673
                     /gene="proW"
                     /locus_tag="OQQ19_000096"
     CDS             1609..2673
                     /gene="proW"
                     /locus_tag="OQQ19_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     permease ProW"
                     /protein_id="HCS1801871.1"
                     /translation="MADQNNPWDTTPAADSAVQSADAWGTPATAPTDGGGADWLTSTP
                     APNVEHFNILDPFHKTLIPLDSWVTEGIDWVVTHFRPVFQGVRVPVDYILNGFQQLLL
                     GMPAPVAIIVFALIAWQISGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCI
                     VIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFA
                     LPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPSIMAGVNQTLMLAL
                     SMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGRDSRSR
                     GNRRWYTTGPVGLLTRPFIK"
     gene            2731..3723
                     /gene="proX"
                     /locus_tag="OQQ19_000097"
     CDS             2731..3723
                     /gene="proX"
                     /locus_tag="OQQ19_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708493.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     substrate-binding protein ProX"
                     /protein_id="HCS1801872.1"
                     /translation="MRHSVLFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQ
                     TLLVSRALEKLGYTVNKPSEVDYNVGYTLLASGDATFTAVNWTPLHDNMYEAAGGDKK
                     FYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKEPKIAKLFDTNGDGKADLTGCNPG
                     WGCEGAINHQLAAYELTNTVTHNQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNEL
                     KPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHIVANKAWTEKNPAAAKLF
                     AIMQLPVADINAQNAIMHDGKASEGDIQGHVDGWIKAHQQQFDGWVNEALAAQK"
     gene            4015..5199
                     /locus_tag="OQQ19_000098"
     CDS             4015..5199
                     /locus_tag="OQQ19_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1801873.1"
                     /translation="MTKPNHELSPALIVLMSIATGLAVASNYYAQPLLDTIARNFSLS
                     ASSAGFIVTAAQLGYAAGLLFLVPLGDMFERRRLIVSMTLLAAGGMLITASSQSLAMM
                     ILGTALTGLFSVVAQILVPLAATLASPDKRGKVVGTIMSGLLLGILLARTVAGLLANL
                     GGWRTVFWVASVLMALMALALWRGLPQMKSETHLNYPQLLGSVFSMFISDKILRTRAL
                     LGCLTFANFSILWTSMAFLLAAPPFNYSDGVIGLFGLAGAAGALGARPAGGFADKGKS
                     HHTTTFGLLLLLLSWLAIWFGHTSVLALIIGILVLDLTVQGVHITNQTVIYRIHPDAR
                     NRLTAGYMTSYFIGGAAGSLISASAWQHGGWAGVCLAGATIALVNLLVWWRGFHRQEA
                     AN"
     gene            5323..6060
                     /gene="ygaZ"
                     /locus_tag="OQQ19_000099"
     CDS             5323..6060
                     /gene="ygaZ"
                     /locus_tag="OQQ19_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-valine exporter subunit YgaZ"
                     /protein_id="HCS1801874.1"
                     /translation="MESPTPQPALGSATFMEGCKDSLPIVISYIPVAFAFGLNATRLG
                     FSPLESVFFSCIIYAGASQFVITAMLAAGSSLWVAALTVMAMDVRHVLYGPSLRSRII
                     QRLQKSKTALWAFGLTDEVFAAATAKLVRNNRRWSENWMIGIAFSSWSSWVFGTVIGA
                     FSGSGLLQGYPAVEAALGFMLPALFMSFLLASFQRKQSLCVTAALVGALAGVTLFSIP
                     VAILAGIVCGCLTALIQAFWQGAPDEL"
     gene            6050..6385
                     /gene="ygaH"
                     /locus_tag="OQQ19_000100"
     CDS             6050..6385
                     /gene="ygaH"
                     /locus_tag="OQQ19_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-valine transporter subunit YgaH"
                     /protein_id="HCS1801875.1"
                     /translation="MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLD
                     TIGIASICALLVVSTAPEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYG
                     LAWKVMAII"
     gene            6476..7006
                     /gene="emrR"
                     /locus_tag="OQQ19_000101"
     CDS             6476..7006
                     /gene="emrR"
                     /locus_tag="OQQ19_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter EmrAB
                     transcriptional repressor EmrR"
                     /protein_id="HCS1801876.1"
                     /translation="MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQSKLLENR
                     NKMLKAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIE
                     RRESDNDRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSALSTTEKDQLEQITRKLLS
                     RLDQMEQDGVVLEAMS"
     gene            7133..8305
                     /gene="emrA"
                     /locus_tag="OQQ19_000102"
     CDS             7133..8305
                     /gene="emrA"
                     /locus_tag="OQQ19_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter periplasmic
                     adaptor subunit EmrA"
                     /protein_id="HCS1801877.1"
                     /translation="MSANAETQTPQQPVKKSGKRKRLLLLLTLLFIIIAVAIGIYWFL
                     VLRHFEETDDAYVAGNQIQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDARQAFE
                     KAKTALASSVRQTHQLMINSKQLQANIEVQKIALAKAQSDYNRRVPLGNANLIGREEL
                     QHARDAVTSAQAQLDVAIQQYNANQAMILGTKLEDQPAVQQAATEVRNAWLALERTRI
                     VSPMTGYVSRRAVQPGAQISPTTPLMAVVPATNMWVDANFKETQIANMRIGQPVTITT
                     DIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDQKQLEQYP
                     LRIGLSTLVSVNTTNRDGQVLANKVRSTPVAVSTAREISLAPVNKLIDDIVKANAG"
     gene            8322..9860
                     /gene="emrB"
                     /locus_tag="OQQ19_000103"
     CDS             8322..9860
                     /gene="emrB"
                     /locus_tag="OQQ19_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter permease
                     subunit EmrB"
                     /protein_id="HCS1801878.1"
                     /translation="MQQQKPLEGAQLVIMTIALSLATFMQVLDSTIANVAIPTIAGNL
                     GSSLSQGTWVITSFGVANAISIPLTGWLAKRVGEVKLFLWSTIAFAIASWECGVSSSL
                     NMLIFFRVIQGIVAGPLIPLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGY
                     ISDNYHWGWIFFINVPIGVAVVLMTLQTLRGRETRTERRRIDAVGLALLVIGIGSLQI
                     MLDRGKELDWFSSQEIIILTVVAVVAICFLIVWELTDDNPIVDLSLFKSRNFTIGCLC
                     ISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGIIPVILSPIIGRFAHKLDMR
                     RLVTFSFIMYAVCFYWRAYTFEPGMDFGASAWPQFIQGFAVACFFMPLTTITLSGLPP
                     ERLAAASSLSNFTRTLAGSIGTSITTTMWTNRESMHHAQLTESVNPFNPNAQAMYSQL
                     EGLGMTQQQASGWIAQQITNQGLIISANEIFWMSAGIFLVLLGLVWFAKPPFGAGGGG
                     GGAH"
     gene            complement(9924..10439)
                     /gene="luxS"
                     /locus_tag="OQQ19_000104"
     CDS             complement(9924..10439)
                     /gene="luxS"
                     /locus_tag="OQQ19_000104"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008458247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HCS1801879.1"
                     /translation="MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPN
                     KEVMPERGSHTLEHLFAGFMRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVAD
                     AWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
                     LPKEKLQELHI"
     gene            complement(10589..12145)
                     /gene="gshA"
                     /locus_tag="OQQ19_000105"
     CDS             complement(10589..12145)
                     /gene="gshA"
                     /locus_tag="OQQ19_000105"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HCS1801880.1"
                     /translation="MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTQATTGH
                     PEALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPL
                     SMPCYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFW
                     QAKCCDISGTDAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAICSSFLQGKPTSLPF
                     EKTECGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAK
                     IGIEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDI
                     NPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNRVILEGRKPGLTLG
                     IGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGKAYQKVCDELVACFDNPDLTFSAR
                     ILRSMIDTGIGGTGKAFAEAYRNLLREEPLEILREEDFVAEREASERRQQEMETADTE
                     PFAVWLEKHA"
     gene            complement(12218..12646)
                     /locus_tag="OQQ19_000106"
     CDS             complement(12218..12646)
                     /locus_tag="OQQ19_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1801881.1"
                     /translation="MSEALSLFSLFASSFLSATLLPGNSEVVLVAMLLSGISYPWVLV
                     LTATMGNSLGGLTNVILGRFFPLRKTSRWQEKATGWLKRYGAVTLLLSWMPVVGDLLC
                     LLAGWMRISWGPVIFFLCLGKALRYVAVAAATVQGMMWWH"
     gene            complement(12643..13198)
                     /gene="yqaB"
                     /locus_tag="OQQ19_000107"
                     /pseudo
     CDS             complement(12643..13198)
                     /gene="yqaB"
                     /locus_tag="OQQ19_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311579.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-1-phosphate/6-phosphogluconate
                     phosphatase"
     gene            complement(13346..13422)
                     /locus_tag="OQQ19_000108"
     tRNA            complement(13346..13422)
                     /locus_tag="OQQ19_000108"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13386..13388),aa:Arg,seq:acg)
     gene            complement(13621..13697)
                     /locus_tag="OQQ19_000109"
     tRNA            complement(13621..13697)
                     /locus_tag="OQQ19_000109"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13661..13663),aa:Arg,seq:acg)
     gene            complement(13895..13971)
                     /locus_tag="OQQ19_000110"
     tRNA            complement(13895..13971)
                     /locus_tag="OQQ19_000110"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13935..13937),aa:Arg,seq:acg)
     gene            complement(13975..14067)
                     /locus_tag="OQQ19_000111"
     tRNA            complement(13975..14067)
                     /locus_tag="OQQ19_000111"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14031..14033),aa:Ser,seq:gct)
     gene            complement(14383..14568)
                     /gene="csrA"
                     /locus_tag="OQQ19_000112"
     CDS             complement(14383..14568)
                     /gene="csrA"
                     /locus_tag="OQQ19_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001774971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HCS1801882.1"
                     /translation="MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHR
                     EEIYQRIQAEKSQQSSY"
     gene            complement(14803..17433)
                     /gene="alaS"
                     /locus_tag="OQQ19_000113"
     CDS             complement(14803..17433)
                     /gene="alaS"
                     /locus_tag="OQQ19_000113"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HCS1801883.1"
                     /translation="MSKSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGM
                     NQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDY
                     FKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDN
                     KGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQ
                     FNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDL
                     SNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKL
                     VGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDG
                     ETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREASGFGADYNAMI
                     RVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGD
                     KGELKDANFSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSA
                     THLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNL
                     PIETNIMDLEAAKAKGAMALFGEKYDERVRVLSMGDFSTELCGGTHASRTGDIGLFRI
                     ISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTR
                     QLEKELQQLKEQAAAQESANISSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLG
                     STIIVLATVAEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGGRPDMAQAGGTD
                     AAALPAALASVKGWVSAKLQ"
     gene            complement(17561..18061)
                     /gene="recX"
                     /locus_tag="OQQ19_000114"
     CDS             complement(17561..18061)
                     /gene="recX"
                     /locus_tag="OQQ19_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HCS1801884.1"
                     /translation="MTESTSRRPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKN
                     GPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGIS
                     REATEKAMRECDIDWCALARDQATRKYDEPLPTVFSEKVKIQRFLLYRGYLMEDIQDI
                     WRNFAD"
     gene            complement(18304..19365)
                     /gene="recA"
                     /locus_tag="OQQ19_000115"
     CDS             complement(18304..19365)
                     /gene="recA"
                     /locus_tag="OQQ19_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HCS1801885.1"
                     /translation="MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTG
                     SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP
                     IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
                     GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF
                     YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELV
                     DLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNS
                     TPDFSVDDSEGVAETNEDF"
     gene            complement(19445..19942)
                     /gene="pncC"
                     /locus_tag="OQQ19_000116"
     CDS             complement(19445..19942)
                     /gene="pncC"
                     /locus_tag="OQQ19_000116"
                     /EC_number="3.5.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide amidase"
                     /protein_id="HCS1801886.1"
                     /translation="MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAG
                     SSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEPVVVEMVIGALKAARADYAVSI
                     SGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQ
                     FLQNT"
     gene            complement(20087..21172)
                     /gene="mltB"
                     /locus_tag="OQQ19_000117"
     CDS             complement(20087..21172)
                     /gene="mltB"
                     /locus_tag="OQQ19_000117"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase B"
                     /protein_id="HCS1801887.1"
                     /translation="MFKRRYVTLLPLFVLLAACSSKPKPTETETTTGTPSGGFLLEPQ
                     HNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTT
                     SVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIG
                     VETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFA
                     GAMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMAN
                     GQAPGLPNGFKTRYSISQLATAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYT
                     ITRYNHSTHYAMAVWQLGQAVALARVQ"
     gene            21428..21991
                     /gene="srlA"
                     /locus_tag="OQQ19_000118"
                     /gene_synonym="gutA"
     CDS             21428..21991
                     /gene="srlA"
                     /locus_tag="OQQ19_000118"
                     /gene_synonym="gutA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIC"
                     /protein_id="HCS1801888.1"
                     /translation="MIETITHGAEWFIGLFQKGGEVFTGMVTGILPLLISLLVIMNAL
                     INFIGQHRIERFAQRCAGNPVSRYLLLPCIGTFVFCNPMTLSQGRFMPEKYKPSYYAA
                     ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLNLPLGPLAVSYLLVGLVTNFFRGWV
                     TDLTTAIFEKKMGIQLEQKVHLAGATS"
     gene            21988..22953
                     /gene="srlE"
                     /locus_tag="OQQ19_000119"
                     /gene_synonym="gutE"
     CDS             21988..22953
                     /gene="srlE"
                     /locus_tag="OQQ19_000119"
                     /gene_synonym="gutE"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HCS1801889.1"
                     /translation="MTRIRIEKGTGGWGGPLELEATPGKKIVYITAGTRPAIVDKLAQ
                     LTGWQAIDGFKEGEPAEAEIGVAVIDCGGTLRCGIYPKRRIPTINIHSTGKSGPLAQY
                     IVEDIYVSGVKEENITVVGDATPQPSSVGRDYDTSKKITEQSDGLLAKVGMGMGMGSA
                     VAVLFQSGRDTIDTVLKTILPFMAFVSALIGIIMASGLGDWIAHGLAPLASHPLGLVM
                     LALICSFPLLSPFLGPGAVIAQVIGVLIGVQIGLGNIPPHLALPALFAINAQAACDFI
                     PVGLSLAEARQDTVRVGVPSVLVSRFLTGAPTVLIAWFVSGFIYQ"
     gene            22964..23335
                     /gene="srlB"
                     /locus_tag="OQQ19_000120"
                     /gene_synonym="gutB"
     CDS             22964..23335
                     /gene="srlB"
                     /locus_tag="OQQ19_000120"
                     /gene_synonym="gutB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HCS1801890.1"
                     /translation="MTVIYKTTITRIGASATDALSDQMLITFREGAPADLEEYCFIHC
                     HGELKGALHPGLQFTLGQHRYPVTAVGSVAEDNLRELGHVTLRFDGLNEAEFPGTVHV
                     AGPVPDDIAPGSVLKFESVKE"
     gene            23339..24118
                     /gene="srlD"
                     /locus_tag="OQQ19_000121"
     CDS             23339..24118
                     /gene="srlD"
                     /locus_tag="OQQ19_000121"
                     /EC_number="1.1.1.140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbitol-6-phosphate dehydrogenase"
                     /protein_id="HCS1801891.1"
                     /translation="MNQVAVVIGGGQTLGAFLCHGLVAEGYRVAVVDIQSDKAANVAQ
                     EINAEYGESMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAFISDFQL
                     GDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFG
                     GVGLTQSLALDLVEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPDQVEQYYIDK
                     VPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQVMF"
     gene            24223..24581
                     /gene="gutM"
                     /locus_tag="OQQ19_000122"
                     /pseudo
     CDS             24223..24581
                     /gene="gutM"
                     /locus_tag="OQQ19_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417186.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GutM"
     gene            24648..25421
                     /gene="srlR"
                     /locus_tag="OQQ19_000123"
                     /gene_synonym="gutR"
     CDS             24648..25421
                     /gene="srlR"
                     /locus_tag="OQQ19_000123"
                     /gene_synonym="gutR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucitol operon DNA-binding transcriptional
                     repressor SrlR"
                     /protein_id="HCS1801892.1"
                     /translation="MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILE
                     HAGTVIRTYGGVVLNKEESDPPIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAGST
                     VLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENA
                     FEHFSFDKLFMGTDGIDLNAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNV
                     VCSLESVDKLITDAGIDPAFRQALEEKGIDVIITGESNE"
     gene            25414..26379
                     /gene="gutQ"
                     /locus_tag="OQQ19_000124"
     CDS             25414..26379
                     /gene="gutQ"
                     /locus_tag="OQQ19_000124"
                     /EC_number="5.3.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311591.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-5-phosphate isomerase GutQ"
                     /protein_id="HCS1801893.1"
                     /translation="MSEALLNAGRQTLMLELQEASRLPERLGDDFVRAANIILHCEGK
                     VVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGA
                     KELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNT
                     LMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASV
                     MDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTTGGTTL
                     QAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQAGII"
     gene            complement(26376..27890)
                     /gene="norR"
                     /locus_tag="OQQ19_000125"
     CDS             complement(26376..27890)
                     /gene="norR"
                     /locus_tag="OQQ19_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311592.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide reductase transcriptional regulator
                     NorR"
                     /protein_id="HCS1801894.1"
                     /translation="MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALL
                     RYDSRQFIPLAIDGLAKGVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI
                     PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA
                     LLIEQLESQNMMPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG
                     TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE
                     MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREE
                     VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRLGLSRVVLSAGAR
                     NLLQHYRFPGNVRELEHAIHRAVVLARATRNGDEVILEAQHFAFPEVTLPPPEAAAVP
                     VVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGMKD"
     gene            28077..29516
                     /gene="norV"
                     /locus_tag="OQQ19_000126"
     CDS             28077..29516
                     /gene="norV"
                     /locus_tag="OQQ19_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic nitric oxide reductase
                     flavorubredoxin"
                     /protein_id="HCS1801895.1"
                     /translation="MSIVVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEK
                     NVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYC
                     TANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDA
                     VLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNL
                     PVDMIATSHGVVWRDNPTQIVELYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGI
                     AETDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLR
                     FRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDQDALELCREHGREI
                     ARQWALAPLPQSTVNKVVKEETSATTTADLGPRMQCSVCQWIYDPAKGEPMQDVAPGT
                     PWSEVPDNFLCPECSLGKDVFEELASEAK"
     gene            29513..30646
                     /gene="norW"
                     /locus_tag="OQQ19_000127"
                     /pseudo
     CDS             29513..30646
                     /gene="norW"
                     /locus_tag="OQQ19_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417191.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavorubredoxin reductase NorW"
     gene            complement(30774..33026)
                     /gene="hypF"
                     /locus_tag="OQQ19_000128"
     CDS             complement(30774..33026)
                     /gene="hypF"
                     /locus_tag="OQQ19_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HCS1801896.1"
                     /translation="MAKNTSCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGD
                     GVEVRLREDPETFLVQLHQHCPPLARIDSVEREPYIWSQLPTEFTIRQSAGGAMNTQI
                     VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCP
                     ACDKEYRDPLDRRFHAQPVACPECGPHLEWVSHGEHAEQEAALQAAIAQLKMGNIVAI
                     KGIGGFHLACDARNSNAVATLRARKHRPAKPLAVMLPVADGLPDAARQLLTTPAAPIV
                     LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN
                     EQALADLQGIADGFLIHNRDIVQRMDDSVVRESGEMLRRSRGYVPDALALPPGFKNVP
                     PVLCLGADLKNTFCLVRGEQAVLSQHLGDLSDDGIQMQWREALRLMQNIYDFTPKYVV
                     HDAHPGYVSSQWAREMNLPTQTVLHHHAHAAACLAEHQWPLDGGDVIALTLDGIGMGE
                     NGALWGGECLRVNYRECEHLGGLPAVALPGGDLAAKQPWRNLLAQCLRFVPEWQNYPE
                     TASVQQQNWSVLARAIERGINAPLASSCGRLFDAVAAALGCAPATLSYEGEAACALEA
                     LAASCHGVTHPVTMPLVDNQLDLAAFWQQWLNWQAQVNQRAWAFHDALAQGFAALMRE
                     QATMRGITTLVFSGGVIHNRLLRARLAHYLADFTLLFPQSLPAGDGGLSLGQGVIAAA
                     RWLAGEVQNG"
     gene            complement(33179..33706)
                     /gene="hydN"
                     /locus_tag="OQQ19_000129"
     CDS             complement(33179..33706)
                     /gene="hydN"
                     /locus_tag="OQQ19_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport protein HydN"
                     /protein_id="HCS1801897.1"
                     /translation="MNRFIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRI
                     HVIKGVNISTATVCRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYG
                     AMEVVVRPVIRNSGAGLNVRADKAEANKCDLCNHREDGPACMAACPTHALICVDRNKL
                     EQLSAEKRRRTALMF"
     gene            complement(33855..34865)
                     /gene="ascG"
                     /locus_tag="OQQ19_000130"
     CDS             complement(33855..34865)
                     /gene="ascG"
                     /locus_tag="OQQ19_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417194.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator AscG"
                     /protein_id="HCS1801898.1"
                     /translation="MTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESG
                     YRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHS
                     AEEERQAIQYLLDLRCNAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVW
                     CDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIA
                     NGKWTPASGAEGVETLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFD
                     DIAIAPYIVPALSSVKIPVTEMIQEIIGRLIFMLDGGDFSPPKTFSGKLIHRDSLIAL
                     SR"
     gene            35125..36582
                     /gene="ascF"
                     /locus_tag="OQQ19_000131"
     CDS             35125..36582
                     /gene="ascF"
                     /locus_tag="OQQ19_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose/arbutin/salicin transporter
                     subunit IIBC"
                     /protein_id="HCS1801899.1"
                     /translation="MAKNYAALARSEIAALGGVDNISAVTHCMTRLRFVIKDDQLIDS
                     PTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLPGDMQPAQPVGKPKLTPRRI
                     GVGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFF
                     LPLMVAASADIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFALIPVTAVKYT
                     YTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGS
                     AISALVYSIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSE
                     IGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIAS
                     LISGFICGAVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFIL
                     TLLLGFEDIPVEEAAAQARKHQSVQPTVAKEVSLN"
     gene            36591..38015
                     /gene="ascB"
                     /locus_tag="OQQ19_000132"
     CDS             36591..38015
                     /gene="ascB"
                     /locus_tag="OQQ19_000132"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase AscB"
                     /protein_id="HCS1801900.1"
                     /translation="MSVFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMA
                     VKLGLEKRFQLRDDEFYPSHEATDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGD
                     EITPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKLVEFFSRY
                     ARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHQLVASA
                     LAAKIAHEVNPQNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPA
                     YSARVFREKGVTIDKALGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSL
                     RNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDELAANGEINDDYR
                     ISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGT
                     LTRTRKKSFWWYKKVIASNGEDLE"
     gene            complement(38174..38644)
                     /gene="hycI"
                     /locus_tag="OQQ19_000133"
     CDS             complement(38174..38644)
                     /gene="hycI"
                     /locus_tag="OQQ19_000133"
                     /EC_number="3.4.23.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation peptidase HycI"
                     /protein_id="HCS1801901.1"
                     /translation="MTDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPE
                     NDIVAIRELRPTRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLK
                     EDIGEVIFLGIQPDIVGFYYPMTQPIKDAVETVYQRLEGWEGNGGFAQLAVEEE"
     gene            complement(38637..39047)
                     /gene="hycH"
                     /locus_tag="OQQ19_000134"
     CDS             complement(38637..39047)
                     /gene="hycH"
                     /locus_tag="OQQ19_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase assembly protein HycH"
                     /protein_id="HCS1801902.1"
                     /translation="MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDC
                     LEAALTCPWDEYLAWIATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAA
                     QTSQQQEWSTMLLSMLHDIHQENAIYLMVRRLRD"
     gene            complement(39044..39811)
                     /gene="hycG"
                     /locus_tag="OQQ19_000135"
     CDS             complement(39044..39811)
                     /gene="hycG"
                     /locus_tag="OQQ19_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycG"
                     /protein_id="HCS1801903.1"
                     /translation="MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVD
                     CGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQS
                     APDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL
                     GLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDFLTQ
                     LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEVRIR"
     gene            complement(39811..40353)
                     /gene="hycF"
                     /locus_tag="OQQ19_000136"
     CDS             complement(39811..40353)
                     /gene="hycF"
                     /locus_tag="OQQ19_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycF"
                     /protein_id="HCS1801904.1"
                     /translation="MFTFIKKVIKTGTATSSYPLEPIAVDKNFRGKPEQNPQQCIGCA
                     ACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWK
                     KEDFLQQSRFALCNCRVCNRPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPECKR
                     QKCLVPSDRIELTRHMKEAI"
     gene            complement(40363..42072)
                     /gene="hycE"
                     /locus_tag="OQQ19_000137"
     CDS             complement(40363..42072)
                     /gene="hycE"
                     /locus_tag="OQQ19_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycE"
                     /protein_id="HCS1801905.1"
                     /translation="MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPE
                     VVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWVTVRVEVDANKPEYP
                     SVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPA
                     PTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR
                     GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL
                     EVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR
                     RDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGP
                     MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLD
                     NLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT
                     LRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNS
                     PLK"
     gene            complement(42090..43013)
                     /gene="hycD"
                     /locus_tag="OQQ19_000138"
     CDS             complement(42090..43013)
                     /gene="hycD"
                     /locus_tag="OQQ19_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycD"
                     /protein_id="HCS1801906.1"
                     /translation="MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYR
                     DIIKLLGRQSVGPDASGWVFRLTPYVMVGVMLTIATALPVVTVGSPLPQLGDLITLLY
                     LFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNI
                     TDTVYHWPLSQSIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFG
                     VMKWGISLKQLVVLQMFVGVFIPWGQMETFTAGGLLLALVIAIVKLVVGVLVIALFEN
                     SMARLRLDITPRITWAGFGFAFLAFVSLLAA"
     gene            complement(43016..44401)
                     /gene="hycC"
                     /locus_tag="OQQ19_000139"
                     /pseudo
     CDS             complement(43016..44401)
                     /gene="hycC"
                     /locus_tag="OQQ19_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311606.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit 3"
     gene            complement(44387..44647)
                     /locus_tag="OQQ19_000140"
                     /pseudo
     CDS             complement(44387..44647)
                     /locus_tag="OQQ19_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708526.1"
                     /note="regulates several genes involved in the formate
                     hydrogenlyase system; seems to prevent binding of FhlA
                     transcriptional activator to the activator sequence of hyc
                     operon; incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
     gene            44859..45209
                     /gene="hypA"
                     /locus_tag="OQQ19_000141"
     CDS             44859..45209
                     /gene="hypA"
                     /locus_tag="OQQ19_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HCS1801907.1"
                     /translation="MHEITLCQRALELIEQQAAKHGAKRVTGVWLKIGAFSCVETSSL
                     AFCFDLVCRGSVAEGCKLHLEEQEVECWCETCQQYVTLLTQRVRRCPQCHGDMLQIVA
                     DDGLQIRRIEIDQE"
     gene            45213..46085
                     /gene="hypB"
                     /locus_tag="OQQ19_000142"
     CDS             45213..46085
                     /gene="hypB"
                     /locus_tag="OQQ19_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HCS1801908.1"
                     /translation="MCTTCGCGEGNLYIEGDEHNPHSAFRSAPFAPAARPKMKITGIK
                     APEFTPSQTEEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFAAR
                     KQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQV
                     NTGKGCHLDAQMIADAAPRLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEG
                     EDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEG
                     MDQWLNWLETQRCA"
     gene            46076..46348
                     /gene="hypC"
                     /locus_tag="OQQ19_000143"
     CDS             46076..46348
                     /gene="hypC"
                     /locus_tag="OQQ19_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 3 maturation protein HypC"
                     /protein_id="HCS1801909.1"
                     /translation="MCIGVPGQIRTIDGNQAKVDVCGIQRDVDLTLVGSCDENGQPRV
                     GQWVLVHVGFAMSVITEAEARDTLDALQNMFDVEPDVGALLYGEEK"
     gene            46348..47469
                     /gene="hypD"
                     /locus_tag="OQQ19_000144"
     CDS             46348..47469
                     /gene="hypD"
                     /locus_tag="OQQ19_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HCS1801910.1"
                     /translation="MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGH
                     THAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRV
                     PGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQ
                     AKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDF
                     HRPLVVAGFEPLDLLQGVVMLVEQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCV
                     NGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPH
                     QCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQESEA"
     gene            47466..48476
                     /gene="hypE"
                     /locus_tag="OQQ19_000145"
     CDS             47466..48476
                     /gene="hypE"
                     /locus_tag="OQQ19_000145"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311613.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation carbamoyl dehydratase
                     HypE"
                     /protein_id="HCS1801911.1"
                     /translation="MNNIQLAHGSGGQAMQQLINSLFMEAFANPWLAEQEDQARLDLA
                     QLVAEGDRLAFSTDSYVIDPLFFPGGNIGKLAICGTANDVAVSGAIPCYLSCGFILEE
                     GLPMETLKAVVTSMAETARTAGIAIVTGDTKVVQRGAADKLFINTAGMGAIPANIHWG
                     AQTLTAGDVLLVSGTLGDHGATILNLREQLGLDGELVSDCAVLTPLIQTLRDIPGVKA
                     LRDATRGGVNAVVHEFAAACGCGIEISESALPVKPAVRGVCELLGLDALNFANEGKLV
                     IAVERNAAEQVLAALHSHPLGKDAALIGEVVERKGVRLAGLYGVKRTLDLPHAEPLPR
                     IC"
     gene            48550..50628
                     /gene="flhA"
                     /locus_tag="OQQ19_000146"
     CDS             48550..50628
                     /gene="flhA"
                     /locus_tag="OQQ19_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase transcriptional activator
                     FlhA"
                     /protein_id="HCS1801912.1"
                     /translation="MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALA
                     DNAAIVLWQAQTQRASYYASREKDTPIKYEDETVLAHGPVRRILSRPDTLHCSYEEFC
                     ETWPQLVAGGLYPKFGHYCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIV
                     SVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYF
                     DIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINL
                     HERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR
                     QIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVL
                     KQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL
                     FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN
                     KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAF
                     TFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI
                     ALPEPETPPAATVVAQEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK
                     RLGIDKSALI"
     gene            complement(50665..51018)
                     /locus_tag="OQQ19_000147"
     CDS             complement(50665..51018)
                     /locus_tag="OQQ19_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide-stimulated promoter family
                     protein"
                     /protein_id="HCS1801913.1"
                     /translation="MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKR
                     LDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRP
                     VPELPEKYRPKKPRE"
     gene            complement(51095..51229)
                     /locus_tag="OQQ19_000148"
     CDS             complement(51095..51229)
                     /locus_tag="OQQ19_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1801914.1"
                     /translation="MIPELIISGEEANGEFLMLVPGKMLFCSFCVMLMKQVRKIASVE
                     "
     gene            51305..53866
                     /gene="mutS"
                     /locus_tag="OQQ19_000149"
     CDS             51305..53866
                     /gene="mutS"
                     /locus_tag="OQQ19_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HCS1801915.1"
                     /translation="MSAIENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDA
                     KRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPATS
                     KGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEP
                     ADRETMAAELQRTNPAELLYAEDFAEMSLIEGRRGLRRRPLWEFEIDTARQQLNLQFG
                     TRDLVGFGVENAPRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRN
                     LEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDF
                     TAGLQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLETVDSAPVQA
                     LREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERL
                     EVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKE
                     YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLN
                     YTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYM
                     RQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILH
                     NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKME
                     DVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES
                     ISPNAAATQVDGTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKSLV"
     gene            53972..54628
                     /gene="pphB"
                     /locus_tag="OQQ19_000150"
     CDS             53972..54628
                     /gene="pphB"
                     /locus_tag="OQQ19_000150"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-serine/threonine phosphatase"
                     /protein_id="HCS1801916.1"
                     /translation="MPSTRYQKINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFCPETD
                     LLISVGDNIDRGPESLDVLRLLNQPWFISVKGNHEAMELDAFATGDGNMWLASGGDWF
                     FDLNDSEQQEAIDLLLKFHHLPHIIEITNDIIKYVIAHADYPGDEYLFGKEIAESELL
                     WPVYRVQKSLNGELQQINGADYFIFGHMMFDNIQTFANQIYIDTGSPKSGRLSFYKIR
                     "
     gene            complement(54679..55446)
                     /locus_tag="OQQ19_000151"
     CDS             complement(54679..55446)
                     /locus_tag="OQQ19_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417215.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1801917.1"
                     /translation="MIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLE
                     QQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGSCIYLDAGT
                     TTLAIAQHLIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENRSCVGEAAATM
                     LRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWL
                     ALPLSEFDQIITDDGLPESASRALAKQDLSLLVAKNE"
     gene            55642..56550
                     /locus_tag="OQQ19_000152"
     CDS             55642..56550
                     /locus_tag="OQQ19_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HCS1801918.1"
                     /translation="MKTGSEFHVGIVGLGSMGMGAALSCVRAGLSTWGADLNSNACAT
                     LKEAGACGVSDNAATFAEKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSST
                     IASADAQEIATALAGFDLEMLDAPVSGDAVKAANGEMTVMASGSDIAFERLAPVLEAV
                     AGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAG
                     NSWMFENRMRHVVDGDYTPHSAVDIFVKDLGLVADTAKALHFPLPLASTALNMFTSAS
                     NAGYGKEDDSAVIKIFSGITLPGAKS"
     gene            56547..57809
                     /locus_tag="OQQ19_000153"
     CDS             56547..57809
                     /locus_tag="OQQ19_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001649192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HCS1801919.1"
                     /translation="MIKIGVIADDFTGATDIASFLVENGLPTVQINGVPTGKMPEAID
                     ALVISLKTRSCPVVEATQQSLAALSWLQQQGCKQIYFKYCSTFDSTAKGNIGPVTDAL
                     MDALDTPFTVFSPALSVNGRTVYQGYLFVMNQLLAESGMRHHPVNPMTDSYLPRLVEA
                     QSTGRCGVVSAHVFEQGVDAVRQELARLQQEGYRYAVLDALTEHHLEIQGEALRDAPL
                     VTGGSGLAIGLARQWAQENGNQAREAGHPLAGRGVVLSGSCSQMTNRQVAHYRQIAPA
                     REVDVARCLSTETLAAYAHELAEWVLGQESVLAPLVFATASTDALAAIQQQYGAQKAS
                     QAVETLFSQLAARLAAEGVTRFIVAGGETSGVVTQSLGIKGFHIGPTISPGVPWVNAL
                     DKPVSLALKSGNFGDEAFFSRAQREFLS"
     gene            57806..58444
                     /locus_tag="OQQ19_000154"
     CDS             57806..58444
                     /locus_tag="OQQ19_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HCS1801920.1"
                     /translation="MSDFAKVEQSLREEMTRIASSFFQRGYATGSAGNLSLLLPDGNL
                     LATPTGSCLGNLDPQRLSKVAADGEWLSGDKPSKEVLFHLALYRNNPRCKAVVHLHST
                     WSTALSCLQGLDSSNVIRPFTPYVVMRMGNVPLVPYYRPGDKRIAQDLAELAADNQAF
                     LLANHGPVVCGESLQEAANNMEELEETAKLIFILGDRPIRYLTAGEIAELRS"
     gene            58449..59225
                     /locus_tag="OQQ19_000155"
     CDS             58449..59225
                     /locus_tag="OQQ19_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HCS1801921.1"
                     /translation="MPRFAANLSMMFTEVPFIERFAAARKAGFDAMEFLFPYDYSTLQ
                     IQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNCEQV
                     HVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPDVKPHYLFSSQYQ
                     ALAIVEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGLPDRHEPDDGE
                     INYPWLFRLFDEVGYQGWIGCEYKPRGLTEEGLGWFDAWR"
     gene            59314..60678
                     /locus_tag="OQQ19_000156"
     CDS             59314..60678
                     /locus_tag="OQQ19_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family transporter"
                     /protein_id="HCS1801922.1"
                     /translation="MSTITLLCIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAG
                     IPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTI
                     AALTLAAFFLGIPVFFDVSFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPP
                     HPGPVATAGLLHADIGWLTIIGIAISIPVGIVGYFAAKIINKRQYAMSVEVLEQMQLA
                     PASEEGATKLSDKINPPGVALVTSLIVIPIAIIMTGTVSATLMPPSHPLLGTLQLIGS
                     PMVALMIALVLAFWLLALRRGWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVES
                     GVGKALANMLQMIDLPLLPAAFIISLALRASQGSATVAILTTGGLLSEAVMGLNPIQC
                     VLVTLAACFGGLGASHINDSGFWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCV
                     WAVI"
     gene            complement(60772..61764)
                     /gene="rpoS"
                     /locus_tag="OQQ19_000157"
     CDS             complement(60772..61764)
                     /gene="rpoS"
                     /locus_tag="OQQ19_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000081498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoS"
                     /protein_id="HCS1801923.1"
                     /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEE
                     LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV
                     VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
                     QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER
                     ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLAR
                     RFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE"
     gene            complement(61827..62918)
                     /gene="nlpD"
                     /locus_tag="OQQ19_000158"
     CDS             complement(61827..62918)
                     /gene="nlpD"
                     /locus_tag="OQQ19_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator NlpD"
                     /protein_id="HCS1801924.1"
                     /translation="MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAP
                     ANTNSGMLITPPPKMGTTSTAQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSY
                     SGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGG
                     NAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPAATTVTA
                     PVTVPTASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAI
                     IATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMG
                     STGTSSTRLHFEIRYKGKSVNPLRYLPQR"
     gene            complement(63058..63684)
                     /gene="pcm"
                     /locus_tag="OQQ19_000159"
     CDS             complement(63058..63684)
                     /gene="pcm"
                     /locus_tag="OQQ19_000159"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HCS1801925.1"
                     /translation="MVSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKA
                     WDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCS
                     VERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMT
                     QLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA"
     gene            complement(63678..64439)
                     /gene="surE"
                     /locus_tag="OQQ19_000160"
     CDS             complement(63678..64439)
                     /gene="surE"
                     /locus_tag="OQQ19_000160"
                     /EC_number="3.1.3.5"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HCS1801926.1"
                     /translation="MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNS
                     LTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVI
                     YSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINV
                     PDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVD
                     EGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW"
     gene            complement(64420..65469)
                     /gene="truD"
                     /locus_tag="OQQ19_000161"
     CDS             complement(64420..65469)
                     /gene="truD"
                     /locus_tag="OQQ19_000161"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HCS1801927.1"
                     /translation="MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHI
                     LVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLS
                     AFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYF
                     GAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQ
                     VVDGDALQLAGRGSWFVATTEELAELQHRVNDKELMITAALPGSGEWGTQRKALAFEQ
                     AAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVV
                     RELINTTGDYAHIAE"
     gene            complement(65466..65945)
                     /gene="ispF"
                     /locus_tag="OQQ19_000162"
     CDS             complement(65466..65945)
                     /gene="ispF"
                     /locus_tag="OQQ19_000162"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HCS1801928.1"
                     /translation="MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHAL
                     TDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQA
                     PKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK"
     gene            complement(65945..66655)
                     /gene="ispD"
                     /locus_tag="OQQ19_000163"
     CDS             complement(65945..66655)
                     /gene="ispD"
                     /locus_tag="OQQ19_000163"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HCS1801929.1"
                     /translation="MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHA
                     LLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWV
                     LVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGL
                     WHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPE
                     DLALAEFYLTRTIHQENT"
     gene            complement(66674..66985)
                     /gene="ftsB"
                     /locus_tag="OQQ19_000164"
     CDS             complement(66674..66985)
                     /gene="ftsB"
                     /locus_tag="OQQ19_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HCS1801930.1"
                     /translation="MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNA
                     KLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNN
                     R"
     gene            complement(67179..67502)
                     /locus_tag="OQQ19_000165"
     CDS             complement(67179..67502)
                     /locus_tag="OQQ19_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3561 family protein"
                     /protein_id="HCS1801931.1"
                     /translation="MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPML
                     IYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALF
                     MWLLG"
     gene            complement(67552..68157)
                     /gene="cysC"
                     /locus_tag="OQQ19_000166"
     CDS             complement(67552..68157)
                     /gene="cysC"
                     /locus_tag="OQQ19_000166"
                     /EC_number="2.7.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HCS1801932.1"
                     /translation="MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTV
                     AGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLV
                     VLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFT
                     GIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS"
     gene            complement(68157..69584)
                     /gene="cysN"
                     /locus_tag="OQQ19_000167"
     CDS             complement(68157..69584)
                     /gene="cysN"
                     /locus_tag="OQQ19_000167"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysN"
                     /protein_id="HCS1801933.1"
                     /translation="MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLI
                     GRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF
                     STEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGI
                     KHLVVAINKMDLVDYSEETFTHIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSE
                     SMSWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQ
                     RVKALPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAV
                     PSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYPVDINNLTQREVENLPLNG
                     IGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPKNEAAVASSEFSA
                     FELELNALVRRHFPHWGARDLLGDK"
     gene            complement(69586..70494)
                     /gene="cysD"
                     /locus_tag="OQQ19_000168"
     CDS             complement(69586..70494)
                     /gene="cysD"
                     /locus_tag="OQQ19_000168"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HCS1801934.1"
                     /translation="MAQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVML
                     HLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINP
                     FVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDP
                     KNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLE
                     RDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVST
                     TSERQGRVIDRDQAGSMELKKRQGYF"
     gene            70746..71783
                     /gene="iap"
                     /locus_tag="OQQ19_000169"
     CDS             70746..71783
                     /gene="iap"
                     /locus_tag="OQQ19_000169"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase isozyme conversion
                     aminopeptidase"
                     /protein_id="HCS1801935.1"
                     /translation="MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFF
                     PGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIA
                     AHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKN
                     TPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGV
                     KTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSV
                     EATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIM
                     LPLVKELAKAS"
     gene            complement(71990..72283)
                     /gene="cas2"
                     /locus_tag="OQQ19_000170"
     CDS             complement(71990..72283)
                     /gene="cas2"
                     /locus_tag="OQQ19_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated endoribonuclease
                     Cas2"
                     /protein_id="HCS1801936.1"
                     /translation="MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIW
                     QQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ"
     gene            complement(72283..73203)
                     /gene="cas1e"
                     /locus_tag="OQQ19_000171"
     CDS             complement(72283..73203)
                     /gene="cas1e"
                     /locus_tag="OQQ19_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated endonuclease Cas1"
                     /protein_id="HCS1801937.1"
                     /translation="MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHI
                     PVGSVACIMLEPGTRVSHAAVHLAATVGTLQVWVGEAGVRVYSSGQPGGARADKLLYQ
                     AKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKW
                     NGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYD
                     IADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGE
                     IEPPQPAPDMLPPAIPEPETLGDSGHRGRG"
     gene            complement(73200..73850)
                     /gene="cas6e"
                     /locus_tag="OQQ19_000172"
     CDS             complement(73200..73850)
                     /gene="cas6e"
                     /locus_tag="OQQ19_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000281458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein
                     Cas6/Cse3/CasE"
                     /protein_id="HCS1801938.1"
                     /translation="MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPSGKERQ
                     FLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELCTGQQLCFNLRANPTICKA
                     GKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDISVDAYRQQQ
                     LRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA"
     gene            complement(73832..74578)
                     /gene="cas5e"
                     /locus_tag="OQQ19_000173"
     CDS             complement(73832..74578)
                     /gene="cas5e"
                     /locus_tag="OQQ19_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein Cas5/CasD"
                     /protein_id="HCS1801939.1"
                     /translation="MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSLSALLGLLAAGV
                     GIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPE
                     LLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPL
                     APLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGKHDGLVASKILRRRDV
                     PLNRQQWLFGERTVNQGPWLSKEEPCTSQE"
     gene            complement(74589..75667)
                     /gene="cas7e"
                     /locus_tag="OQQ19_000174"
                     /pseudo
     CDS             complement(74589..75667)
                     /gene="cas7e"
                     /locus_tag="OQQ19_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311639.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein
                     Cas7/Cse4/CasC"
     gene            complement(75682..76250)
                     /gene="casB"
                     /locus_tag="OQQ19_000175"
                     /pseudo
     CDS             complement(75682..76250)
                     /gene="casB"
                     /locus_tag="OQQ19_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311640.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein Cse2/CasB"
     gene            complement(76247..77809)
                     /gene="casA"
                     /locus_tag="OQQ19_000176"
     CDS             complement(76247..77809)
                     /gene="casA"
                     /locus_tag="OQQ19_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein Cse1/CasA"
                     /protein_id="HCS1801940.1"
                     /translation="MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADL
                     QGAAWQFLLGLLQTSFAPKDQRSWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFM
                     QDFDELKVKATFIASLLPDAPGKQTKERNTDHFIKRDTTQHLCLHCVPLALFSIQLNA
                     PIGGRGYYPGLRGGGPLTTLIELLEYQGNQQTPLWRKLWLNVMPQDEADLPLPKTFDD
                     LVFPWLAPTRTSELDGAVVTDEQVNKLQAYWGMPRRIRIDFKTTSIGNCDICGRQSDA
                     LLGLMSLKNYGVQYVMWRHPLTPYRLPLKEGGDFYSVKPQPGGLIWRDWLGLIEVGNS
                     KNNTELPAQVVKLLNASNLKQTRVGLWGFGFDFEDMKVRCWYEHHFPLLLNKKEDLIP
                     KLRLAAQAASHILSLLHRALKEAWFSEKKTTKLDFGFVDIDFWNKTQHRFLRLVRKIE
                     EGQDPDELLSKWQKEMWLFARQDFDDRVFTNPYEPVDLERVMTARKKYFTTSAEKQNA
                     NAAREKKQEAAE"
     gene            complement(77907..79461)
                     /gene="cas3"
                     /locus_tag="OQQ19_000177"
                     /pseudo
     CDS             complement(77907..79461)
                     /gene="cas3"
                     /locus_tag="OQQ19_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000142534.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="CRISPR-associated helicase Cas3'"
BASE COUNT        18739 a        21556 c        20300 g        18866 t
ORIGIN      
        1 gctcctctta tgtgatgggg aaagcggttg aaacagaaga tgaagactgg aatttctgag
       61 ggtgttattt tcaaaaatat cactacccgc agcagggaaa taattcccgc caaatagctt
      121 tttatcacgc aaatattctg tagtgatcta cactgagact ctgttgcatt attcgcctga
      181 aactacaata ttcaggcgtt ttttcgctat ctatgacaaa aaatatcaac ttttctcgat
      241 ttgctctcag cccttatatc acgggaaatt ccggcgattt gctcgcatca atattcatgc
      301 cacatttgcc ctcaggggtt gcctcagatt ctcagtatgt tagggtagaa aaaagtgact
      361 atttccattg ggtaatatat cgacataaac aaataaagga atctttctat tgcatggcaa
      421 ttaaattaga aattaaaaat ctttataaaa tatttggcga gcatccacag cgagcgttca
      481 aatatatcga acaaggactt tcgaaagaac aaattctgga aaaaactggg ctatcgcttg
      541 gcgtaaaaga cgccagtctg gccattgaag aaggcgagat atttgtcatc atgggattat
      601 ccggctcggg taaatccaca atggtacgcc ttctcaatcg cctgattgaa cccacccgcg
      661 ggcaagtgct gattgatggt gtggatattg ccaaaatatc cgatgccgaa ctccgtgagg
      721 tgcgcagaaa aaagattgcg atggtcttcc agtcctttgc cttaatgccg catatgaccg
      781 tgctggacaa tactgcgttc ggtatggaat tggccggaat taatgcagaa gaacgccggg
      841 aaaaagccct tgatgcactg cgtcaggtcg ggctggaaaa ttatgcccac agctacccgg
      901 atgaactctc tggcgggatg cgtcaacgtg tgggattagc ccgcgcgtta gcgattaatc
      961 cggatatatt attaatggac gaagccttct cggcgctcga tccattaatt cgcaccgaga
     1021 tgcaggatga gctggtaaaa ttacaggcga aacatcagcg caccattgtc tttatttccc
     1081 acgatctcga tgaagctatg cgtattggcg accgaattgc cattatgcaa aatggtgaag
     1141 tggtacaggt cggcacaccg gatgaaattc tcaataatcc ggcgaatgat tatgtccgta
     1201 ccttcttccg tggcgttgat attagtcagg tattcagtgc gaaagatatt gcccgccgga
     1261 caccgaatgg cttaattcgt aaaacccctg gcttcggccc acgttcggca ctgaaattat
     1321 tgcaggatga agatcgcgaa tatggctacg ttatcgaacg cggtaataag tttgtcggcg
     1381 cagtttccat cgattcgctt aaaaccgcgt taacgcagca gcaaggtctt gatgcggcgc
     1441 tgattgatgc gccgttagca gtcgatgcac aaacgcctct tagcgagttg ctctctcatg
     1501 tcggacaggc accctgtgcg gtacccgtgg tcgacgagga ccaacagtat gtcggcatca
     1561 tttcgaaagg aatgctgctg cgcgctttag atcgtgaggg ggtaaataat ggctgatcaa
     1621 aataatccgt gggataccac gccagcggcg gacagtgccg tgcaatccgc agacgcctgg
     1681 ggtacaccgg cgactgcacc gactgacggc ggtggtgctg actggctgac cagtacgcct
     1741 gcgccaaacg tcgagcattt taatattctc gatccgttcc ataaaacgct gatcccgctc
     1801 gacagttggg tcactgaagg gatcgactgg gttgttaccc atttccgtcc cgtcttccag
     1861 ggcgtgcgcg ttccggttga ttatatcctc aacggtttcc agcaattgct gctgggtatg
     1921 cccgcaccgg tggcgattat cgttttcgct ctcatcgcct ggcagatttc cggggtcgga
     1981 atgggcgtgg cgacgctggt ttcgctgatt gccatcggcg caatcggtgc ctggtcgcag
     2041 gccatggtta ccctggcgct ggtgttaacc gccctgctgt tctgtatcgt cattggtttg
     2101 ccgctgggga tctggctggc gagaagtccg cgagcggcga aaattattcg tccactgctt
     2161 gatgccatgc agaccacgcc agcgtttgtt tatctggtgc caatcgtcat gctatttggt
     2221 atcggtaacg tgccgggcgt ggtggtgacg atcatctttg ctctgccgcc gattatccgt
     2281 ctgaccattc tggggattaa ccaggttccg gcggatctga ttgaagcctc gcgctcattc
     2341 ggtgccagcc cgcgccagat gctgttcaaa gttcagttac cgctggcgat gccgagcatt
     2401 atggcgggcg ttaaccagac gctgatgctg gccctttcta tggtggtcat tgcctcgatg
     2461 attgccgtcg gcgggctggg tcagatggta cttcgcggta tcggtcgtct ggatatgggg
     2521 cttgccaccg ttggcggcgt cgggattgtg atcctcgcca ttatcctcga tcgcctgacg
     2581 caggccgttg ggcgcgactc acgcagtcgc ggcaaccgtc gctggtacac cactggccct
     2641 gttggtctgc tgacccgccc attcattaag taactctgca cttgcccggt gacgccgggc
     2701 attatcaccc tgccaaaaaa aggaataaca atgcgacata gcgtactttt tgcgacagcg
     2761 tttgccacgc ttatctctac acaaactttt gctgccgatc tgccgggcaa aggtattact
     2821 gttaatccag ttcaaagcac catcaccgaa gaaaccttcc agacgctgct ggtcagccgt
     2881 gcgctggaga aattaggcta taccgtcaac aaacccagcg aagtagatta caacgttggc
     2941 tacaccttgc ttgcttccgg cgatgcaacc ttcaccgccg tgaactggac gccactgcat
     3001 gacaacatgt acgaagctgc cggtggcgat aagaaatttt atcgtgaagg ggtatttgtt
     3061 aacggcgcgg cacagggtta cctgatcgat aagaaaaccg ccgaccagta caaaatcacc
     3121 aacatcgcac aactgaaaga gccgaagatc gccaaactgt tcgataccaa cggcgacggt
     3181 aaagcggatt taaccggttg taatcctggc tggggctgcg aaggtgcgat caaccaccag
     3241 cttgccgcgt atgaactgac caacaccgtg acgcataatc aggggaacta cgcagcgatg
     3301 atggccgaca ccatcagtcg ctacaaagag ggcaaaccgg tgttttatta cacctggacg
     3361 ccgtactggg tgagtaatga gctgaagcca gggaaagatg tggtctggtt gcaggtgccg
     3421 ttctccgcac tgccgggcga taaaaatgcc gataccaaac tgccgaatgg cgcgaattac
     3481 ggcttcccgg tcagcaccat gcatatcgtt gccaacaaag cctggaccga gaaaaatccg
     3541 gcggcagcca aactgtttgc cattatgcag ttgccagtgg ccgatattaa cgcccagaac
     3601 gccattatgc atgacggcaa agcctcagaa ggcgatattc agggccacgt tgatggctgg
     3661 atcaaagccc accagcagca gttcgatggc tgggtgaatg aggcgctggc agcgcagaag
     3721 taatttttat tcaggcggat aaggcgtttt tgccttatcc gccgctctgt acacaatgcc
     3781 tgatgcgacg ctgacgcgtc ttatcatgcc tacaaaatac actcattccg tatggcggat
     3841 aaggcgtttt cgccgcatcc gccgttctgt gcacaatgcc tgatgcgacg ctggcgcgtc
     3901 ttatcatgcc tacaaaccac atcgcacatt tcaacaagct atctttcatc ccatattcat
     3961 caacatccgc tattattgat ttccagctta atcatcacct gatgaacaaa aataatgact
     4021 aaacctaatc atgagcttag cccggcgctg atcgtgctga tgtctatcgc caccggtctg
     4081 gcggtagcca gtaactatta cgcccagcca ttgctcgaca ccatcgcgcg taacttttcc
     4141 ctttccgcca gttcggcagg ctttattgtt accgccgcgc aattgggcta tgcagcaggt
     4201 ctgctgtttc ttgttcccct cggtgatatg tttgaacgcc gccgcctgat tgtctcgatg
     4261 accttactgg cggcaggcgg catgttaatc actgccagca gtcagtcgct ggcgatgatg
     4321 atcctcggta cggcattaac cggtttattc tctgtcgtgg cacaaattct ggttccgctg
     4381 gcagcgacgc tggcttcacc ggacaaacgc ggcaaagtgg ttggcactat tatgagcggt
     4441 ctgctgttgg ggatcttact cgcacggacc gttgccggat tgctggcgaa tctcggcggc
     4501 tggcgcaccg tcttttgggt tgcctcggtg ttaatggcac tgatggcgct ggcattatgg
     4561 cgtggtctgc cacaaatgaa atcagaaacc cacctcaact acccacagtt gttaggttcc
     4621 gttttcagca tgtttatcag cgataagatc ctgcgcaccc gcgcattgct gggctgcctg
     4681 acctttgcca acttcagcat tctctggacc tcaatggcct ttttgcttgc cgctccacct
     4741 tttaactaca gcgatggtgt cattggtctg tttggacttg cgggagctgc cggagcgttg
     4801 ggcgctcgtc cggcgggcgg ttttgccgat aagggtaaat cgcaccacac cacaactttc
     4861 ggtctgctgc tgctattact ttcatggctg gcgatctggt ttggtcacac ttccgtactg
     4921 gcgctgatta tcggcatcct ggtgctggat ctcaccgtac agggcgtgca tatcactaac
     4981 cagacggtaa tttatcgaat acaccctgat gcgcgtaatc gcctgaccgc aggttacatg
     5041 accagctact ttattggcgg tgccgccggt tcgctaattt cagcctcagc ctggcaacat
     5101 ggcggttggg ctggcgtttg tctggctggc gcgacgattg ccctggttaa cttactggtc
     5161 tggtggcgag gttttcatcg tcaggaagcc gcaaattaag caatcagcaa ccgttttcgt
     5221 ggctttacac ttataagggt gttaagaagc ccatcagtct gataaggtta agatattcat
     5281 tcagtctatt tataatatta acaatcgtta agcgtacact ctatggaaag ccctactcca
     5341 cagcctgctc ttggttcggc gaccttcatg gaaggatgca aagacagttt accgattgtt
     5401 attagttata ttccggtggc ctttgcgttc ggtctgaatg cgacccgtct gggattctct
     5461 cctctcgaaa gcgttttttt ctcctgcatc atttatgcag gcgcgagcca gttcgtcatt
     5521 accgcgatgc tggcagccgg gagtagtttg tgggttgctg cactgaccgt catggcaatg
     5581 gatgttcgcc atgtgttgta tggcccgtca ctgcgtagcc gtattattca gcgtctgcaa
     5641 aaatcgaaaa ccgccctgtg ggcatttggc ctgacggatg aggtttttgc cgccgcaacc
     5701 gcaaaactgg tacgcaataa tcgccgctgg agcgagaact ggatgatcgg cattgccttc
     5761 agttcatggt catcgtgggt atttggtacg gtaatagggg cattctccgg cagcggcttg
     5821 ctgcaaggtt atcccgccgt tgaagctgca ttaggtttta tgcttccggc actctttatg
     5881 agtttcctgc tcgcctcttt ccagcgcaaa caatctcttt gcgttaccgc agcgttagtt
     5941 ggtgcccttg caggcgtaac gctattttct attcccgtcg ccattctggc aggcattgtc
     6001 tgtggctgcc tcactgcgtt aatccaggca ttctggcaag gagcgcccga tgagctatga
     6061 ggttctgctg cttgggttac tggttggcgt ggcgaattat tgcttccgct atttgccgct
     6121 gcgcctgcgt gtgggtaatg cccgcccaac caaacgtggc gcggtaggta ttttgctcga
     6181 caccattggc atcgcctcga tatgcgctct gctggttgtc tctaccgcac cagaagtgat
     6241 gcacgataca cgccgtttcg tgcccacgct ggtcggcttc gcggtactgg gtgccagttt
     6301 ctataaaaca cgcagcatta tcatcccaac actgcttagt gcgctggcct atgggctcgc
     6361 ctggaaagtg atggcgatta tataacccac aagaatcatt tttctaaaac aatacattta
     6421 ctttatttgt tactgtcgtt actatatcgg ctgaaattaa tgaggtcata cccaaatgga
     6481 tagttcgttt acgcccattg aacaaatgct aaaatttcgc gccagccgcc acgaagattt
     6541 tccttatcag gagatccttc tgactcgtct ttgcatgcac atgcaaagca agctgctgga
     6601 gaaccgcaat aaaatgctga aggctcaggg gattaacgag acgttgttta tggcgttgat
     6661 tacgctggag tctcaggaaa accacagtat tcagccttct gaattaagtt gtgctcttgg
     6721 atcatcccgt accaacgcga cgcgtattgc cgatgaactg gaaaaacgcg gttggatcga
     6781 acgtcgtgaa agcgataacg atcgccgctg cctgcatctg caattaacgg aaaaaggtca
     6841 cgagtttttg cgcgaggttt taccaccgca gcataactgc ctgcatcaac tctggtccgc
     6901 gctcagcaca acagaaaaag atcagctcga gcaaatcacc cgcaaattgc tctcccgtct
     6961 cgaccagatg gaacaagacg gtgtggttct cgaagcgatg agctaacgcg tcatctcgct
     7021 caaaaatcca gatttataaa agaaaaaatg accggccagc atcgcaacat gctggccttt
     7081 ttggcaagca ggtcggctca gccgatgagt taagaagatc gtggagaaca atatgagcgc
     7141 aaatgcggag actcaaaccc cgcagcaacc ggtaaagaag agcggcaaac gtaagcgtct
     7201 gctcctcctt ctcaccttgc tctttataat tattgccgta gcgataggga tttattggtt
     7261 tttggtactg cgtcatttcg aagaaaccga tgacgcatac gtggcaggga atcagattca
     7321 aattatgtct caggtgtctg gcagcgtgac gaaagtctgg gccgataaca ccgattttgt
     7381 aaaagaaggc gatgttctgg tcactctcga cccgacagat gctcgccagg cgtttgaaaa
     7441 agccaaaact gcactggctt ccagcgttcg ccaaacccac cagctgatga ttaacagcaa
     7501 acagttacag gcgaatattg aggtgcaaaa aatcgccctc gcgaaagcac aaagcgacta
     7561 caaccgccgt gtgccgctgg gcaatgccaa cctgattggt cgcgaagagc tgcaacacgc
     7621 ccgcgacgcc gtcaccagtg cccaggcgca actggacgtc gctattcaac aatacaatgc
     7681 caatcaggcg atgattctgg ggactaaact ggaagatcag cctgccgtgc aacaggctgc
     7741 caccgaagta cgtaacgcct ggctggcgct ggagcgtacc cgtattgtca gtccgatgac
     7801 cggttatgtc tcccgccgcg cggtacagcc tggggcgcaa attagcccaa cgacgccgct
     7861 gatggcggta gttccagcca ccaatatgtg ggtggatgcc aactttaaag agacgcagat
     7921 tgccaatatg cgtatcggtc agccggtcac tatcaccacg gatatttacg gcgatgatgt
     7981 gaaatacacc ggtaaagtgg ttggtctgga tatgggcaca ggtagcgcat tctcactgct
     8041 tccggcgcaa aatgcgaccg gtaactggat caaagtcgtt cagcgtctac ctgtgcgtat
     8101 cgaactggac cagaaacagc tggagcaata cccgctgcgc attggtttgt ccacgctggt
     8161 gagcgtcaat accactaacc gtgacggtca ggtactggca aataaagtac gttcaacacc
     8221 ggtcgcggta agtaccgcgc gtgaaatcag cctggcacct gtcaataaac tgatcgacga
     8281 tatcgtaaaa gctaacgctg gctaatccag aggtgcgtgt gatgcaacag caaaaaccgc
     8341 tggaaggcgc gcaactggtc attatgacga ttgcgctgtc actggcgaca ttcatgcagg
     8401 tgctggactc caccattgct aacgtggcga tccccactat cgccgggaat ctgggctcat
     8461 cgctcagcca gggaacgtgg gtaatcactt ctttcggggt ggcgaatgcc atctcgatcc
     8521 cgcttaccgg ctggctggca aagcgcgtcg gggaagtgaa actgttcctt tggtccacca
     8581 tcgcctttgc tattgcgtcg tgggagtgtg gtgtctccag cagcctgaat atgctgatct
     8641 tcttccgtgt gattcagggg attgtcgctg ggccgttgat cccactttcg caaagtcttt
     8701 tgctgaataa ttacccgcca gccaaacgct caatcgcgct ggcgttgtgg tcgatgacgg
     8761 tgattgtcgc gccaatttgc ggcccaatcc tcggcggtta tatcagcgat aattaccact
     8821 ggggctggat attcttcatc aacgtgccaa ttggcgtggc ggtggtgttg atgacactgc
     8881 aaaccctgcg cggacgcgaa acccgcaccg aacggcggcg gattgatgcc gtggggctgg
     8941 cactgctggt tattggtatc ggtagcctgc agattatgct cgaccgcggt aaagagctgg
     9001 actggttttc atcacaggaa attatcattc ttaccgtggt ggcggtggtg gctatctgct
     9061 tcctgattgt ctgggagctg accgacgata acccgatagt cgatctgtcg ttgtttaagt
     9121 cgcgcaactt caccatcggc tgcttgtgta tcagcctcgc gtatatgctc tacttcggcg
     9181 cgattgttct gctgccgcag ttgttgcagg aggtctacgg ttacacggcg acctgggcag
     9241 gtttggcctc tgcgccggta gggattattc cggtgatcct gtcgccgatt atcggccgct
     9301 tcgcgcataa actggatatg cggcggctgg taaccttcag ctttattatg tatgccgtct
     9361 gcttctactg gcgtgcctat acctttgaac caggtatgga ttttggcgcg tcggcctggc
     9421 cgcagtttat ccaggggttt gcggtggcct gcttctttat gccgctgacc accattacgc
     9481 tgtctggttt gccaccggaa cgactggcgg cggcatcgag cctctctaac tttacgcgaa
     9541 cgctggcggg gtctatcggc acgtcgataa ccacgaccat gtggaccaac cgcgagtcga
     9601 tgcaccatgc gcagttgact gagtcggtaa acccgttcaa cccgaatgcc caggcgatgt
     9661 acagtcaact ggaagggctt gggatgacgc aacagcaggc atcaggctgg attgcccagc
     9721 agatcactaa tcaggggctg attatttccg ccaatgagat cttctggatg tcagccggga
     9781 tattcctcgt cctgctgggg ctggtgtggt ttgctaaacc gccctttggc gcaggtggcg
     9841 gcggaggtgg tgcgcactaa gtacaactaa gccagttcat ttgaactggc ttttttcaat
     9901 taattgtgaa gatagtttac tgactaaatg tgcagttcct gcaacttctc tttcggcagt
     9961 gccagttctt cgttgctgtt gatgcgtacg tcacgttcca gaatgctacg cgcaatatcc
    10021 tgcgcttcct gcaacgagtg catctggtaa gtgccacact ggtagacgtt cagctccggg
    10081 atctgattct gatcctgcac tttcagcacg tcttccattg ccgctttcca ggcatcagca
    10141 acacgctgct catctggcgt accaatcaga ctcatataaa aaccggtgcg gcagcccatt
    10201 ggcgagatat cgataatctc tacaccatta ccgttaagat ggttacgcat aaaaccagca
    10261 aacaggtgct ccagagtatg gctccctctt tctggcatca cttctttgtt cggcacgcag
    10321 aagcgcagat cgaacacggt gattgcgtcg ccatgcgggg tgttcattgt tttcgccacc
    10381 cgaactgcag gcgcttccat ccgggtatga tcgactgtga agctatctaa caacggcatt
    10441 tagccacctc cggtaatttt tttaaaaatt ttctgaactc tttcttccca ggcgagtctg
    10501 agtatatgaa agacgcgcat ttgttatcat catccctgaa ttcagagatg aaattttggc
    10561 cactcacgag tggccttttt cttttctgtc aggcgtgttt ttccagccac accgcaaacg
    10621 gttcggtatc agcggtttcc atttcctgct gacggcgttc agatgcctcg cgctcggcta
    10681 caaaatcctc ttcgcgcaga atttccaacg gctcttcacg cagcagatta cggtaggctt
    10741 ctgcaaacgc tttgcctgtt ccgccaatac cagtatcaat catagacctt aagatacggg
    10801 cagagaaagt cagatcggga ttatcgaagc aggcgaccag ttcatcacac actttctgat
    10861 acgctttgcc gccgttaatg ctatccaacg tttgcgcgac gcgtttcaga tcgcggaaca
    10921 gatctttacc cacctgcggt aacgggaact gcgcggtttc gcagccgata cccagcgtca
    10981 ggcccggttt gcgaccttcg aggatcaccc ggttccagtt aacgcgtgta caggcaagtt
    11041 cgctactgct catttccggt gcatcagcca gcgcacacca gaccataaac aggtcgagga
    11101 atcgcacctg ctgttcatct acaccaatcg gcgagaacgg gttgatgtcc agcgaacgca
    11161 cttcaatata ttcaatgccg ccacgtaaca gcgcatcaga aggtgactcg ccgctgcggg
    11221 taacgcgttt tggacgaatc ggcgcataca gttcgttttc aatctgcagc acgttgctat
    11281 tgatttgcag cctcttaccg tctttctcaa taccaatctt cgcgtactct tccgatggcg
    11341 ttttgattgc ctgtttaagg cccgctacgt actcgtaaag atcgttgaag gtaataccaa
    11401 gattgctttg cgatttattg gtatagccga gatcgctcaa acgaagagag gtcgcatacg
    11461 gcaggtaata cataccgcac tcggttttct caaacggcag cgacgttggt tttccttgca
    11521 ggaaagaaga acaaatcgcc ggagatgcac caaacagata aggaatgacc caaccgaaac
    11581 gatagtaatt gcggataacg cggaaatagc ccgcagaaat tttctctttg gcatcagtgc
    11641 ccgagatatc acagcacttc gcttgccaga atgccattgg caaagagaaa ttgtagtgca
    11701 cgccggaaat ggtttgcatc agcgcgccgt agcgattttt cagcccttca cgatacagcg
    11761 ttttaaagcg tccggtgtta gaagtgccgt actgtgccag ttcgatgtcc tgaccttctg
    11821 cgatgtagca tggcatactt aacggccaca tccgctcatc gcccatattg cgcgccgtat
    11881 aacgatgcag atcgcgcata aaggtcaaca tatgttcaat atcaccatcc actggtgtaa
    11941 tgaattccag caatgcttcc gcaaaatcgg tagtaatcca tttgtgcgtc agtgcggaac
    12001 ctaatgcttc aggatgacct gttgttgcct gtgtgccatc agcattaaca cgcaaagttt
    12061 cgcgctccag cccacgctgt atccccttta acgcctgagg atgtttttcc agccaggcca
    12121 gcgcctgtga tacgtccggg atcaaattga cctcccgcct gtcaaaatcg ttttaattag
    12181 cataactgta atggtgacca tatgtgcagg cctacaatta gtgccaccac atcatgccct
    12241 gaacggtagc tgctgcaact gcaacatagc gtaaagcttt accaaggcac aaaaaaaaga
    12301 ttaccggtcc ccacgagatg cgcatccatc ccgctaacag acacagtaaa tcgccaacca
    12361 cgggcatcca gcttaataat agcgtgactg caccatagcg tttcagccag ccagtagctt
    12421 tctcttgcca gcgcgatgtt ttacgcaatg gaaagaaacg cccaaggata acgttagtta
    12481 accctccaag gctattaccc attgttgctg ttaaaactaa aacccaggga taactgatcc
    12541 cggaaagcaa cattgccacc agcacgactt cggagttgcc gggtaatagt gtagcgctga
    12601 gaaaactact ggcaaacaac gagaaaagcg ataacgcttc actcacagca agcgaacatc
    12661 cacggcgtcc atgcctgctg cacgggccgc ctgaataccg aaatcggcat cttcaaagac
    12721 cacacactgc gtcggttgca cgcccatacg ctgcgcgcac aacaaaaatg tgtctggcgc
    12781 gggtttatgg tgtttgacgt gatcagcagc gacgacggcg tcaaaataac ggcgtaatcc
    12841 caggtgcgcc agcaatgcct cagcgatggc gctttcactc cccgttccta cagccattgg
    12901 gcgacgacca tgccaacttt tcaccacttc aacaagagga agcggctcga cactatccag
    12961 cagcatactt cttactgctt ctgttttttc acgcgctaac gcatgcgggg cgagatcggc
    13021 ctgattcagc tcaataattg cctgagcaat acgccaggtg ggcgatccat taagcgcaat
    13081 cattgcctga acatcgtact gaagaccgta gtgccctaat acttcgcgcc acgctttacg
    13141 gtgcgtaggc tccgtatcca ggaatatcaa aaattaaacc tgcataacgc tcgtacatgg
    13201 tcttctcgca agtcgaaaaa tatgacgcta ctttagcgta attgcttgat tttgtcgctg
    13261 atggcgaagg agaagaaaat tcaggaaatg gataaagtag ttatttagaa atgagatatt
    13321 tttgaaggaa atttttggga gaagatggtg catccgggag gattcgaacc tccgaccgct
    13381 cggttcgtag ccgagtactc tatccagctg agctacggat gcatcgggaa aatttatttt
    13441 actgctgata ttgatatcgc tactaaagcc atatcaagta agagatggtg catccgggag
    13501 gattactcgc cttgcggctc gcccttcggg ccgttgctaa agcaacgtta tcatccctgg
    13561 tgcctgcggt taattccgct acctcttcga taccttcatt gctgaagatt tcggagaata
    13621 tggtgcatcc gggaggattc gaacctccga ccgctcggtt cgtagccgag tactctatcc
    13681 agctgagcta cggatgcatc gggaaactta ctttactgca gattttttga taccgctact
    13741 aaagccgtat caagtaagag atggtgcatt cgggaggatt actcgccttg cggctcgccc
    13801 ttctggccgt tgctaaagca acgttatcct ccctggtgcc tgcggttata ccgccacctc
    13861 ttccatacct tcatcgctga aagtacgtag aatatggtgc atccgggagg attcgaacct
    13921 ccgaccgctc ggttcgtagc cgagtactct atccagctga gctacggatg caaatggcgg
    13981 tgaggcgggg attcgaaccc cggatgcagc ttttgaccgc atactccctt agcaggggag
    14041 cgccttcagc ctctcggcca cctcaccaca cgcctcttac gagtgcttcg aagaacttgt
    14101 ttatcgctca tcgtcgctgc gtggcgcaca tattactttc tgagacttat aagtcaaaca
    14161 atttttccca cacttttatc gtttgcacac ttcacgctca attagtctgt aaaaacgtca
    14221 aaaagagtgt tttatctaca gaaaaacgga ggtctggcag atagcagtaa tgcaaaaaaa
    14281 tggagactta agttgaatga acgggagtaa agcgaaaaga ctatagagtg aaggagaaat
    14341 tttgagggtg cgtctcaccg ataaagatga gacgcggaaa gattagtaac tggactgctg
    14401 ggatttttca gcctggatac gctggtagat ctcttcacgg tgaacagaaa cttccttcgg
    14461 ggcatttacg ccaatacgta cctggttgcc cttcacccct aaaactgtca cggtgacctc
    14521 atccccaatc atgagggtct caccaactcg acgagtcaga atcagcattc tttgctcctt
    14581 gaaagattaa aagagtcggg tctctctgta tcccggcatt atccatcata taacgccaaa
    14641 aagtaagcaa tgacaaacac attacatgta agcagtcatg gcattacatt ctgttaaacc
    14701 taagtttagc cgatatacac aacttcaacc tgactttatc gttgtcgata gcgttaatgc
    14761 gaatgccgtg aagcgagtcc acggcattgc ctgacgctta tattattgca atttcgcgct
    14821 gacccagcct ttcacactgg ctaacgctgc aggtaaggcc gcagcatccg taccaccggc
    14881 ttgcgccatg tcaggacgtc caccaccctt gccgcccacc tgctgagcga ccataccaat
    14941 cagttcccct gctttcacac gatctgtgac gtccttagat acgcctgcaa tcagagaaac
    15001 cttaccttcg gctaccgttg ccagcacgat aattgtcgac cccagctgat tttttaaatc
    15061 gtcaaccatg gtacgcaaca ttttcggctc aacaccgcta agctcgctaa ccaacagctt
    15121 aacaccatta acatcaattg ccttactgga aatatttgcg ctctcctgtg cggcagcttg
    15181 ttctttaagc tgttgtagtt ctttttctaa ctgacgcgta cgttccagta ctgagcgcac
    15241 tttatccgcc agattattgc tatcgccttt cagcagatgc gcgacttcgc ttaagcgatc
    15301 gctgtctgca tgaacggtgg tgatagcgcc ttctccggtt accgcttcga tacgacgaac
    15361 gcctgcagca gtacccgatt cagagatgat gcggaacaga ccaatatcac cagtgcggct
    15421 ggcgtgagta ccgccacaca gctcggtgga gaaatcgccc atgctcagca cgcgtacacg
    15481 ctcatcatac ttctcgccga acagcgccat cgcacctttc gctttcgccg cttcgagatc
    15541 catgatgttg gtttcgatcg gcaaattgcg acgaatctgt gcgttcacca ggtcttcgac
    15601 cgcacgaatc tcttccggtt tcatcgcttc gttgtgtgag aagtcgaagc gcagcacctt
    15661 gtcgttaacc agtgaacctt tctgcgatac atgagtcccc agaacctggc gcagcgcagc
    15721 gtgcatcagg tgcgttgcgg agtgattcag acgaatacgg gcgcgacgag cctcatcaac
    15781 atcagcctgc acagcgtcgc ccactttcag agaacccgca gcaagtttac cgatgtgacc
    15841 aatcgcctgg ccgtatttct gcgtatcttc caccgcgaag gagaagttag cgtctttcag
    15901 ttcgccttta tcaccaacct gaccgccgga ttccgcatag aatggtgttt gatctagcac
    15961 gaccacagct tcctggcctg cattgatggc atcaaccgct ttaccatcaa caaacagcgc
    16021 ggtcactttg ccgttcagtt ccagatggtc atagccttta aattcagatg cactatcaac
    16081 acggatcatt gcgttgtaat cggcaccaaa gccgctggct tcgcgcgcgc gacgacgctg
    16141 ctcttccatt gctgcttcaa aaccagcttc gtcaactttg atgttgcgct cacgacaaac
    16201 atcagccgtc aggtcaaccg ggaagccata ggtgtcgtac agacggaaag ccgtttcacc
    16261 atccagcgta tcaccagaaa gttttgccag ctcttcatcc agcaacgcca gaccgcgctc
    16321 cagagtacgg gcaaactgct cttcttcagt cttcagcacc tgctcaacct gcgcctgctg
    16381 gcgtttcagg tcttcacccg cagagcccat aacgtcgatc agcggaccaa ccagtttgta
    16441 gaagaaggtt tctttcgcgc cgagcatatt gccgtgacgc actgcgcgac gaatgatacg
    16501 acgcagtaca taaccacggt tttcattgga cggcattacg ccatccgcga tcaggaacgc
    16561 acaagaacga atgtggtcag cgattacgcg cagcgattta ttgctcagat cggtcgcgcc
    16621 agtgactttc gctaccgcct ggatcaacgt gcggaacagg tcgatgtcat agttagagtt
    16681 aacgtgttgc agcaccgcag caatacgctc cagacccata ccggtatcta cagacggctt
    16741 cggcagcggt tccatcgtgc catctgcctg gcggttgaac tgcatgaaga cgatgttcca
    16801 gatctcaatg tagcggtcgc cgtcttcttc cggacttccc ggagggccac cccaaatgtg
    16861 gtcgccgtga tcgtagaaga tttcggtgca cgggccgcac ggaccagtgt cacccatctg
    16921 ccagaagttg tcagatgcgt atggcgcacc tttgttatcg ccgatgcgaa taatacgttc
    16981 gcgcgggatc ccgacttctt tttcccagat ttcgtaggct tcgtcgtcgc tttcatagac
    17041 ggtaacccac agacgctctt tcggcagggc aaaccatttt tcgctggtca gcagttccca
    17101 tgcaaactga atggcatcgt gtttgaaata gtcgccgaag ctgaagttgc ccagcatttc
    17161 gaagaaggta tggtgacgcg cggtgtaacc gacgttttcc aggtcgttgt gtttaccacc
    17221 cgcacgcacg cagcgttggg aagtggtagc gcgggaataa ttacgcttgt cgagcccaag
    17281 gaacacatcc ttgaactgat tcatcccggc gttggtaaac aacaaagttg ggtcgttatg
    17341 gggtaccagg gagctgctgg caactacctg atgtccctta ctatggaaaa agtcgagaaa
    17401 cgcctgacgg atctcagcgg tgctcttgct cataattatc ctgaaatcaa gctaacgaaa
    17461 tatcgccacc agctccagcg tgtcttaacc gccgggctgg taactgaaaa gtgggaataa
    17521 gataagtttt cttgactggg aagtaaaata ccgtatgcgt tcagtcggca aaatttcgcc
    17581 aaatatcctg gatatcttcc atcagatagc cacgatagag cagaaaacgc tggatcttaa
    17641 ctttttctga aaagacagtt ggcaaaggtt catcatattt tcgcgtcgcc tgatcgcgcg
    17701 ccagtgcgca ccagtcgatg tcacattcac gcatcgcttt ttctgtcgct tcgcgggaaa
    17761 tacctttctg attcagttcc tgacgaatac gtgcaggtcc ataacctttg cggctacggc
    17821 tggcgataaa gcgcgcaaca aatcggctgt catcgagata gccatgttca tggcaccatg
    17881 caataacgcg ctcgtaatct tctgccgtag catcaatctc ttctgggcca tttttgccca
    17941 taatcggtgc cgcgagttta cgtcgcagtt cttgctcact gtgatcgcgc accgccagaa
    18001 tgcgtaccgc acgatccaac aggcgagcat atgccgggcg acgggacgtt gattctgtca
    18061 tggcatatcc ttacaactta aaaaagcaaa agggccgcag atgcgaccca ggttttgctg
    18121 ataaacagat ttaatagtca atgagtgtgc agaatgttcc cgcaggccca attcgttaga
    18181 ggatcgaggt gagagtaatt tttcacgcca gtgctggcct gttcccctca ccctaaccct
    18241 ctccccaaag gggcgagggg accgtccgtg cacacattat ctattatcat caataacgaa
    18301 cgattaaaaa tcttcgttag tttctgctac gccttcgctg tcatctacag agaaatccgg
    18361 cgttgagttc gggttgctca gcagcaactc acgtactttc ttctcgatct ctttcgcggt
    18421 ttccgggtta tctttcagcc aggcagttgc attcgcttta ccctgaccga tcttctcacc
    18481 tttgtagctg taccacgcgc ctgctttctc gatcagcttc tcttttacgc ccaggtcaac
    18541 cagttcgccg tagaagttga taccttcgcc gtagaggatc tgaaattcag cctgtttaaa
    18601 cggtgcagcg attttgttct tcaccacttt cacgcgggtt tcgctaccca ccacgttttc
    18661 gccctctttc accgcgccga tacgacggat gtcgagacga acagaggcgt agaatttcag
    18721 cgcgttacca ccggtagtgg tttccgggtt accgaacatc acaccaattt tcatacggat
    18781 ctggttgatg aagatcagca gcgtgttgga ctgcttcagg ttacccgcca gcttacgcat
    18841 cgcctggctc atcatacgtg ccgcaaggcc catgtgagag tcgccgattt cgccttcgat
    18901 ttccgctttc ggcgtcagtg ccgccacgga gtcaacgacg ataacgtcta ctgcaccaga
    18961 acgcgccagg gcgtcacaga tttccagtgc ctgctcgccg gtgtccggct gggagcacag
    19021 caggttgtcg atatcgacgc ccagtttacg tgcgtagatt gggtccagcg cgtgttcagc
    19081 atcgataaac gcacaggttt taccttcacg ctgcgctgcg gcgatcacct gcagcgtcag
    19141 cgtggtttta ccggaagatt ccggtccgta gatttcgacg atacggccca tcggcagacc
    19201 acctgcccca agcgcgatat ccagtgaaag cgaaccggta gagatggttt ccacatccat
    19261 ggaacggtct tcacccaggc gcatgatgga gcctttacca aattgtttct caatctggcc
    19321 cagtgctgcc gccaacgctt tctgtttgtt ttcgtcgata gccattttta ctcctgtcat
    19381 gccgggtaat accggatagt caatatgttc tgttgaagta attatactgt atgttcatac
    19441 agtatcaagt gttttgtaga aattgttgcc acaaggtctg caatgcatac gcagtagcct
    19501 gacgacgcac cgcatcacgg tcgccgctga agcattcccg ccgggtaatg ccttcaccgc
    19561 gggcagtggc aaaagcaaac cagacggtgc cgacaggctt ctcttcactg ccgccatccg
    19621 gcccggcgat accactaata gacacggcat aatcagcacg agccgctttc agtgcgccta
    19681 tcaccatttc caccacgacg ggttcactca ccgcgccatg ctgcgccagc gtctcttcgc
    19741 gtacgccgat catctgcgct ttggcttcgt tactgtaggt gacaaatccg cgttcaaacc
    19801 aggcggagct accggcaata tcggtaatca ctttcgctac ccaaccaccg gtacaagact
    19861 cggcagttgt tacggttgcg ccacgggctt tcagcgcctg cccaacctgt tcacttaact
    19921 gcatcagttc actgtcagtc atcacaacct ctgtcagtca aaaatttatg ccggacaaga
    19981 tagcactttc gtcaggaaga tggtgttggc gttgcaattt tacgaggagg attcagaaaa
    20041 aagctgatta gccagaggga agctcacgcc cccctcttgc aaatagttac tgcacgcgcg
    20101 ccagcgccac ggcttgtcct aactgccaga ccgccattgc gtaatgggtg ctgtggttat
    20161 aacgggtaat ggtgtagaag ttcggcagac cgtaccagta ctggtaaccg gtaccgacat
    20221 ccagacgcag caggctggct tgttgatggt tgcccagcgg ctgctgtggc gttaaacctg
    20281 ccgtggcaag ctgcgaaatg ctgtacctgg ttttgaagcc atttggcaag cctggagcct
    20341 gaccgtttgc cattaccgcg acctgatcgc ctttcaccca gccgtgcgct ttgaaatagt
    20401 tcgccacgct accgatcgca tcaaccggat cccacaggtt gatatgcccg tcgccgctga
    20461 aatctaccgc atattgtttg taagacgacg gcataaactg tccgtagccc atcgccccgg
    20521 caaaggaacc tttcagattg agcggatcgt cctgctcgtc gcgcgccatc agcaggaagg
    20581 tttccagctc gccagagaaa tactccgcgc ggcgtgggta gttaaatgac agcgttgcca
    20641 gcgcatcgag gatgcgagtt ttccccatca cgcgccccca gcgggtttca acgccgataa
    20701 tcccgacgat aatttccggc ggtacgccat acacctgcca cgcgcgattc aacgcatctt
    20761 catactgatt ccagaaaacc acaccgttct gcacgttgtc cggcgtaata aattttttgc
    20821 gataacgcag ccatgcgccg ttcggacctg atggcggttt caccgatgtg gttggtgcct
    20881 ggttatccat cagccgcagt accgaatcca gacgcttcgc ctgggagaga atttcctgca
    20941 actgctgacg atcgaaaccg tgtttgttca ccattttgtc gatgaactgc tgggcattcg
    21001 ggttattagc gaaatcgccg cccatctgca tcacattgtg ctgcggctca agcaggaagc
    21061 cgccagacgg cgttccggtg gtcgtttcag tctcagtagg ttttggcttg ctgctacagg
    21121 cggcaagcaa cacaaaaagg ggaagcaatg ttacataacg acgcttgaac atgagggggc
    21181 catttaacag attcaaccag gggcaagtat ggtaaagcat cacgccccgc acaaggaagc
    21241 ggtagtcact gcccgatacg gactttacat aactcaactc attcccctcg ctatcctttt
    21301 actcaaactt ccaaattaaa atatttatct ttcattttta gattaaaata acacttttaa
    21361 atctttcaat ctgattagat taggttgccg tttggtaata aaacaataaa tcctgaagga
    21421 gagaacaatg atagaaacca ttactcatgg tgcagagtgg tttatcgggc tgttccaaaa
    21481 gggcggagag gtgtttaccg ggatggtgac cggcattctt ccgctgttga ttagcctgct
    21541 ggttatcatg aacgcactga ttaattttat cggtcagcat cgtattgaac gttttgctca
    21601 acgttgcgcc ggtaaccctg tttcccgtta cctgctgcta ccgtgcattg gcacgtttgt
    21661 cttttgcaat ccgatgacct taagccaggg tcgctttatg ccggaaaagt acaaacccag
    21721 ctactacgcg gcggcctctt atagctgcca ctcaatgaat ggcctctttc cccatatcaa
    21781 ccctggcgaa ctgtttgttt atcttggcat tgccagcggt ctgacaacgc tgaacctgcc
    21841 acttggccca ctggcggtga gctatctgct ggttggtctg gtcaccaact tctttcgcgg
    21901 ctgggtgacc gatctgacca ccgccatttt tgagaaaaag atgggcattc aacttgaaca
    21961 aaaagttcac ctggcaggag caacatcatg acgcgtattc ggatcgaaaa aggaacgggt
    22021 ggctggggcg gcccgcttga gctggaagcc acgccgggca aaaaaatcgt ctatatcacc
    22081 gccggtaccc ggcctgcgat tgttgacaaa ctggcacaac ttactggctg gcaggctatt
    22141 gacggattta aagaaggtga acccgcggag gcggaaattg gtgtcgcggt aatcgactgt
    22201 ggcggcacat tacgctgcgg catctatccg aaacgacgta ttcccaccat taatatccac
    22261 tcgacgggca agtccggtcc gctggcgcag tacattgtgg aagatattta tgtctctggc
    22321 gtaaaagaag aaaacatcac tgtagtgggt gatgcgacac cacaaccctc ttccgtgggc
    22381 cgtgactatg acaccagtaa gaaaatcacc gaacaaagcg atggtttact ggcgaaggtg
    22441 ggaatgggca tgggcatggg gtccgccgtt gcggtgctgt ttcaatctgg tcgtgacacc
    22501 atcgacactg tattaaaaac cattctgccg tttatggcat tcgtctcggc gctcattggc
    22561 atcattatgg cttctggcct tggtgactgg attgcccacg gtcttgctcc gctggcgagc
    22621 catccactgg gtctggtcat gctggcgctc atctgctcct tcccactgct ttcacctttc
    22681 ctcggcccag gcgcagttat cgcacaggtt atcggcgtat tgattggcgt gcagattggt
    22741 ctcggcaata ttccgccgca tctggcttta ccggcactgt ttgccatcaa cgcgcaggcg
    22801 gcctgcgact tcatcccggt cggtttgtcg ctggcggaag cccgtcagga cacggttcgc
    22861 gtcggtgtcc cttctgtact ggtgagccgc tttttaaccg gcgcaccgac tgtactgatc
    22921 gcctggtttg tctccggttt tatctatcaa tagaggctga aacatgaccg ttatttataa
    22981 gaccaccatc acccgtatcg gcgcgagtgc cactgacgcc ctcagcgacc agatgctcat
    23041 cacctttcgt gaaggcgcgc cagcggacct cgaagagtat tgcttcattc attgccacgg
    23101 cgagttgaaa ggtgcactcc atcccggttt gcaatttacg ctcgggcagc atcgctatcc
    23161 ggtgaccgct gttggcagcg tggcggaaga caaccttcgc gaactgggtc atgtcaccct
    23221 gcgcttcgat ggtttaaacg aagcggaatt tccgggcact gtccatgtgg caggccctgt
    23281 acccgacgat atcgcgccgg gatcggtttt gaagtttgaa tctgttaagg agtaaaaaat
    23341 gaatcaggtt gccgttgtca tcggtggtgg gcaaacctta ggcgcgttcc tgtgccacgg
    23401 tctggttgcc gaggggtatc gcgtcgcggt tgtcgatatt cagagcgaca aagccgcaaa
    23461 tgtggcacaa gaaattaacg ccgaatatgg tgaaagtatg gcgtacggtt ttggtgctga
    23521 cgccactagc gagcaaagcg ttctggcgct ctctcgtggg gtagatgaaa tctttggtcg
    23581 cgtggatttg ctggtctata gcgccggaat agcaaaagca gcctttatca gcgacttcca
    23641 gctcggcgat tttgaccgtt cgctacaagt gaatctggtg ggttatttcc tgtgtgcccg
    23701 tgaattttcg cgtttgatga tccgcgacgg gattcagggt cgcattattc agatcaactc
    23761 gaaatccggc aaagtgggca gcaaacacaa ctctggctac agcgcagcga aatttggtgg
    23821 cgtcgggctg actcaatcac tggcgctgga tctggtggag tacggcatta cggtgcattc
    23881 actgatgctc ggtaacctgc tgaaatcgcc gatgttccag tcactgttgc cacaatacgc
    23941 gaccaagctg ggtatcaaac cggatcaagt cgagcagtat tacattgaca aagtaccgct
    24001 caaacgcggc tgcgattatc aagatgtgct gaatatgctg ctgttctacg ccagtcctaa
    24061 ggcgtcgtac tgcaccggac agtcgatcaa tgtcaccggc ggtcaggtga tgttctgatc
    24121 aacagcggag atccattaag gatctccgtg agactataga atgcctgatg cgctacgctc
    24181 atcaggcata caggacttcc gccactacat taaggaaaag ttatggtatc cgcactcatc
    24241 accgtcgccg ttatcgcctg gtgtgcgcaa ctggccttag gcggctggca aatttctcgt
    24301 tttaaccgtg ccttcgacac actatgccag caagggcggg ttggcgtggg tcgttccagc
    24361 gggcgcttta aaccgcgggt cgtggtcgcc atcggctgga cgatcagcag cgcatcgtcg
    24421 acaccttgtt tatgaaagga ctgaccgtct tcgcccgacc gcaaaaaatt cccgcaatta
    24481 ccggtatgca tgcgggtgat ttacagcccg atgtgatctt tccccatgat ccactatcac
    24541 agaatgctct atcattggcg cttaaactga aacgtggata atttcgttgt gaatgttact
    24601 tgcttgcgaa gttatcattt tgaaacctaa atcaggtaat cacgcccatg aaacctcgtc
    24661 agcgtcaggc cgccattctg gagtatctgc aaaagcaggg taaatgctcg gttgaagaat
    24721 tggcgcaata ctttgacacc acaggcacaa ccattcgcaa agatctggtc attctggaac
    24781 atgccggaac cgtcattcgt acttatggcg gagtggtgtt gaataaagag gaatccgatc
    24841 cgcctatcga tcataaaaca ctcatcaaca cccacaagaa agagctgatt gcagaagctg
    24901 ccgttagttt tatccatgat ggcgattcga tcattcttga tgctggcagt accgttttgc
    24961 agatggttcc cctgctctcg cgctttaata acatcacggt gatgaccaac agcctgcata
    25021 tcgtcaatgc gctatccgaa ctggataacg aacaaactat cctgatgcca ggcggaacgt
    25081 ttcgtaaaaa atcggcctca tttcacggac agctggcaga gaatgccttc gaacatttca
    25141 gtttcgataa attgtttatg ggcaccgacg gcatcgatct caatgcgggc gtaaccacct
    25201 tcaacgaggt ttataccgtc agtaaggcaa tgtgcaatgc cgcgcgcgaa gtgattttga
    25261 tggcggactc atcaaagttt ggccgtaaaa gccccaacgt agtttgcagt cttgaaagcg
    25321 tcgataagct gattaccgac gcaggtatcg atccggcgtt tcgtcaggcg ctggaagaga
    25381 aagggatcga tgtgatcata accggagaga gcaatgagtg aagcactact gaacgcggga
    25441 cgtcagacgt taatgctgga gttgcaggaa gcaagccgtt taccggaacg tctgggcgat
    25501 gattttgttc gcgccgccaa tatcatcctg cactgcgaag gcaaagtggt ggtttcggga
    25561 attggcaaat cgggccacat tggtaagaaa atcgccgcaa cacttgccag taccggcaca
    25621 ccggcttttt ttgtccatcc ggcagaagca ctgcacggcg atctggggat gattgaaagc
    25681 cgcgatgtga tgctgtttat ctcttactcc ggtggcgcga aggaactgga tctgattatt
    25741 ccgcgtctgg aagataaatc tatcgcgctg ctggcgatga ccggcaaacc gacgtcaccg
    25801 ctgggcctgg cggcaaaagc ggtgctggat atctccgtag aacgcgaagc ctgcccgatg
    25861 caccttgcgc cgacctccag caccgtcaat accctgatga tgggtgacgc gctggcgatg
    25921 gcggtcatgc aggcgcgcgg atttaatgaa gaagattttg cccgctccca cccagccggg
    25981 gcactgggcg ctcgcttgct gaataaagtg catcatctga tgcgccgtga cgatgccatc
    26041 ccacaggtgg cgttaaccgc cagcgtgatg gatgcgatgc tggaactcag ccgcaccggt
    26101 ctggggctgg tggcggtatg tgacgctcaa caacaggtac aaggcgtctt taccgacggc
    26161 gatttacgtc gctggctggt aggcggcggc gcactcacca cgccagttaa tgaagcgatg
    26221 acgacaggcg gcaccacgtt acaggcgcaa agtcgcgcca tcgacgccaa agagatcctg
    26281 atgaagcgca aaatcactgc cgcaccggtg gtggatgaaa acggcaaact caccggcgca
    26341 attaacctgc aggatttcta tcaggccggg attatttaat ccttcattcc cagacgtttc
    26401 gccagccgat gcaggttggc gacgtcggtt tccagcatcc gcgcgcaggc agcccagtta
    26461 tgatgatttt gtgccagtgc ctggcgaata gtttcacgct ggaacgcttc tgtcgcttca
    26521 cgcaggtttt gcttaacaac gggcaccgcc gccgcttctg gcggcggcaa cgtcacctca
    26581 ggaaaagcaa aatgttgcgc ctcaagaatc acttcatcgc cgttgcgggt ggctctcgcc
    26641 agcactaccg cccgatgaat agcatgttcc agttcgcgca cgttccccgg aaaacgatag
    26701 tgttgcagta aatttcgcgc tccggcactt aataccacgc gggagagccc cagccgcaaa
    26761 cgacactgtt cgcagaaata ccccgccagc agaatgacat catcgccccg ctcacgcagc
    26821 ggcggcaccg aaagtggaaa cacgctcagg cgatgaaaca agtcagcgcg aaatcgccct
    26881 gccagcacct cttcgcgtaa gtcgcggtta gtcgccgcca gcacgcgcac atcgacccgc
    26941 aaactacggt catcgccaac gcgctgaata tcgccatact gcaacaccct cagcagcttg
    27001 gcctgcaatg ccaacgacaa ctcgccgatc tcatccagaa acagagtgcc gttatccgcc
    27061 atttcaaact tcccgctgcg gttactgata gcgccagtaa acgctccttt cacatgcccg
    27121 aacaactcac tttccgccac actttccggc agtgcagcac agttgagata gaccagcgga
    27181 ttcaccgccc gtggcgaggc ttcatgaatc gctttcgcca ccagctcctt accggttccc
    27241 gtctcaccgc tgatcaggac gttgagatcg gacgccgcca caatctcaat ctcttttttc
    27301 agttgcgtca tgccagggga caagccaatc atctgcgtct gtttcaccgc ttcaaacggc
    27361 gtggcatcgc ctggcatcat attctggctt tccagttgtt caatcagcaa cgcattgctt
    27421 aacgctcccg ccgccagcgc agcaatcagc cgtagctctt cgtcgctgaa aacatcgaac
    27481 tgatcgggct gcatcccgtc gagcgtcagt gcgccgatca ggttttgccc ggcaaacaat
    27541 ggcagaccaa cgcaggcgtg aaccttcaga ctctcctgcc caggaatcaa accgtcatag
    27601 ggatcgggca attcgctgtc tgcgggaaag cgcaccacat ccccggcgcg ggcaatcgct
    27661 tccagccgtg gatgcccttc cagcgcaaag cgtctaccga gtacaccctt tgccagaccg
    27721 tcgatggcaa gcggaataaa ctgccgcgaa tcgtaacgta gcaacgcaga cgcatcgcac
    27781 tccagcacct gacgtagcgt ggtgatcagg cgctgaaaac gatcctgatg accaatccca
    27841 cgctgcaatt cgatggcgat attcgccagc acatcaacgg aaaaactcat ctttgcctca
    27901 ctgtcaattt gactatagat attgtcatat cgaccatttg attgatagtc attttgacta
    27961 ctcattaatg agcataattt tatttataga gtaaaaacaa tcagataaaa aactggcacg
    28021 taatctgcaa ttagcaagac atctttttag aacacgctga ataaattgag gttgctatgt
    28081 ctattgtggt gaaaaataac attcattggg ttggtcaacg tgactgggaa gtgcgtgatt
    28141 ttcacggtac ggaatataaa acgctgcgcg gcagcagtta caacagctac ctcatccgcg
    28201 aagaaaaaaa cgtgctgatc gacaccgtcg accataaatt cagccgcgaa tttgtgcaga
    28261 acctgcgtaa tgaaatcgat ctggcggata tcgattacat cgtgattaac catgcagaag
    28321 aggaccacgc tggggcgctg accgaactga tggcgcaaat tcccgatacg ccgatttact
    28381 gtactgccaa tgctatcgac tcgataaatg gtcatcacca tcatccggag tggaatttta
    28441 atgtggtgaa aactggtgac acgctggata tcggcaacgg caaacagctc atttttgtcg
    28501 aaacgccaat gctgcactgg ccggacagca tgatgactta cctgacaggc gacgcggtgc
    28561 tgttcagtaa cgatgctttc ggtcagcact actgcgacga gcatctgttc aacgatgaag
    28621 tggatcagac ggagcttttc gagcagtgcc agcgttacta cgccaatatc ctgacgccgt
    28681 tcagccgcct ggtaacaccg aaaattaccg agatcctggg ctttaactta ccagtcgata
    28741 tgatagcgac ctctcacggc gtggtatggc gcgataaccc gacgcaaatt gtcgagctgt
    28801 acctgaaatg ggcggctgat tatcaggaag acagaatcac cattttctac gacaccatgt
    28861 cgaataacac ccgcatgatg gctgacgcta tcgcccaggg gattgcggaa accgacccac
    28921 gcgtggcggt gaaaattttc aacgtcgccc gaagcgataa aaacgaaatc ctgaccaatg
    28981 tcttccgctc aaaaggcgtg ctggtcggca cttcgacgat gaataacgtg atgatgccga
    29041 aaatcgccgg gctggtggag gagatgactg gtttacgctt ccgtaacaaa cgcgccagtg
    29101 ctttcggctc tcacggctgg agcggcggtg cggtggatcg tctttccacg cgcctgcagg
    29161 atgcgggttt cgaaatgtcg cttagcctga aagcgaaatg gcgaccagac caggacgctc
    29221 tggagttatg ccgtgaacac ggtcgcgaaa tcgcccgtca gtgggcgctc gcgccgctgc
    29281 cgcagagcac ggtgaataag gtagtcaaag aagaaacctc tgccaccacg acggctgacc
    29341 tcggcccacg gatgcagtgc agcgtctgcc agtggattta cgatccggca aaaggcgagc
    29401 caatgcagga cgttgcgcca ggaacgccgt ggagtgaagt cccggataac ttcctctgcc
    29461 cggaatgctc cctcggcaaa gacgtctttg aagaactggc atcggaggca aaatgagtaa
    29521 cggcattgtg atcatcggtt cgggcttcgc cgcccgccaa ctggtgaaaa atattcgcaa
    29581 acaggacgcc actattccat taaccctgat tgccgccgac agcatggatg agtacaacaa
    29641 acctgacctc agccatgtta tcagtcaggg gcaacgtgcc gatgacctta cccgccagac
    29701 ggcgggtgaa tttgccgagc agtttaatct gcacctgttt ccacaaacct gggtgacgga
    29761 tatcgatgcc gaagcccgtg tggtgaaaag ccagaataat cagtggcaat acgacaagct
    29821 agtactggca accggtgcca gtgcctttgt cccgcctgtg cctgggcgtg agttaatgct
    29881 gacgttaaat agtcagcaag agtatcgcgc ctgtgaaacg caactgcggg atgcccgacg
    29941 cgtgttgatt gttggcggtg gtttgattgg tagcgaactg gcgatggatt tttgtcgtgc
    30001 aggcaaagcg gtcacgctaa tcgacaacgc tgccagtatt ctggcgtcgt taatgccacc
    30061 ggaagtaagc agccgcttgc agcatcggtt gacggagatg ggcgttcatc tgctgttgaa
    30121 atctcagtta caggggctgg aaaaaacgga ttctggcatt ctggcaacgc tggaccacca
    30181 gcgtagtatc gaagtggatg cggtaattgc cgccaccgga ctgcgcccgg aaacagccct
    30241 ggcacgacgc gccgggctga cgattaatcg cggcgtttgc gtcgatagtt atctgcaaac
    30301 cagtaatgac gatatttatg cgctgggcga ttacgcggaa atcaacggtc aggtactgcc
    30361 attcctgcag ccgattcaac ttagcgcgat ggtgctggca aaaaatcttc tcggcaataa
    30421 cacgccgctg aaactaccga cgatgctggt gaaaatcaaa acgccggaat taccgctgca
    30481 tctggcaggc gaaacccagc gtcaggattt acgctggcaa attaataccg aacgctaggg
    30541 aatggtggct cgcggtgttg acgatgctga ccagcttcgc gcctttgtgg tcagtgagga
    30601 tcggatgaaa gaggcatttg gattgttgaa aacattgccg atgtaggtgg gctactgtgc
    30661 ctaaaatgtc ggatgcgacg ctagcgcgtc ttatccgacc tacggggacg catgtgtagg
    30721 ccggataagg cgtttacgcc gcatccggca atggtgtcca aatgcaacac gttttatccg
    30781 ttctggactt cacccgctaa ccaacgcgcc gcagcaataa ccccctgccc cagagacaaa
    30841 ccgccatcac ccgccggtaa actctgtgga aagagcaatg tgaaatcagc gagataatgc
    30901 gccagacgtg cacgcagcaa acggttatga ataaccccgc cgctaaatac cagcgtagtg
    30961 ataccacgca tcgtggcctg ctcacgcatc aacgcggcaa aaccctgcgc cagcgcatca
    31021 tgaaacgccc acgcgcgttg attaacctgt gcctgccagt tcagccactg ctgccagaaa
    31081 gcggcgagat ccagttgatt gtccaccagc ggcatcgtca ccggatgcgt cactccgtgg
    31141 catgaggctg cgagcgcctc cagagcacaa gccgcttcac cttcataact taacgtggct
    31201 ggcgcacagc ccagtgccgc cgccactgca tcgaacaacc gcccacacga tgacgccagc
    31261 ggcgcgttaa ttccacgctc aatggcccgc gccagcacgc tccagttttg ctgttgcaca
    31321 cttgctgttt cagggtaatt ctgccactcc ggcacaaagc gcaggcactg cgccagcagg
    31381 tttcgccacg gctgcttcgc tgccaaatcg ccacccggaa gcgccactgc aggcaagccg
    31441 cccaggtgct cacattcgcg atagttcacc cgcaggcact cgccgcccca caaagcgccg
    31501 ttctccccca taccgatacc gtcgagcgtc aaagcaatga catcaccgcc atccagcggc
    31561 cactgatgct ctgccagaca cgccgctgca tgggcatgat gatgcagtac cgtttgcgtc
    31621 ggcagattca tttcacgcgc ccactggctg gagacatagc ccggatgcgc gtcatgcaca
    31681 acgtatttcg gggtaaaatc gtagatgttt tgcatcaggc gtaacgcttc gcgccactgc
    31741 atctggatgc catcgtcact taaatcgccc agatgctgac tcaacaccgc ttgttcaccg
    31801 cgcaccaggc agaaggtatt tttcagatcc gctccgagac acagcacagg cggaacattt
    31861 ttaaagcccg gaggcaaagc cagcgcatcc ggcacatacc cccgcgaacg gcgcagcatt
    31921 tcgccgcttt cgcgcaccac cgaatcatcc atccgctgca cgatgtcgcg gttatgtatc
    31981 aagaatccgt cggcaatgcc ctgcaaatcc gccagcgcct gttcgttgct gatagctggt
    32041 ggtttaccgc tcaggttgcc ggaggtcatc accagcgggc attgcagttc ctgtaacagc
    32101 aaatgctgga gcgggttcgc aggcaacatt accccgactt cgttaaggtc aggggcgata
    32161 tcatcacaaa gctcaggaac gtatttttta tccaccagca caatcggcgc ggcgggcgtg
    32221 gtaagcaact ggcgcgcagc gtctggtaaa ccgtcagcca ctggcaacat gaccgccagc
    32281 ggtttcgccg ggcgatgttt gcgcgcccga agtgtcgcca ccgcgttact gttacgtgca
    32341 tcgcaggcaa gatgaaatcc gccaatccct ttgatggcga caatgttgcc catttttaac
    32401 tgtgcgatag ccgcctgtaa tgccgcctct tgttctgcat gttcaccatg acttacccat
    32461 tcaagatgcg ggccacactc cgggcaggcc accggctggg cgtggaagcg acgatcgagc
    32521 gggtcgcggt actctttgtc acaagccgga cacaacggaa acgccgccat cacggtaaac
    32581 gggcggtcgt aaggcatggc gcgaataatg gtgaaacgcg ggccgcagtg ggtacagttg
    32641 ataaacggat aacgataacg ccgttcgcct ggggtattca tttcggcaag gcaagcaggg
    32701 caagtagcgg catccgggac aatttgcgta ttcatggcac ctcccgcgct ctggcggatg
    32761 gtgaactcag tgggcagttg tgaccagatg tacggctcac gctcgacgct atcaatacgc
    32821 gccagcggcg ggcagtgctg atgcaattga acaagaaacg tttccgggtc ttcccgcagc
    32881 cggacttcta cgccatcgcc gtcattacag acatcgccgt gaagatttaa ttgctgtgcc
    32941 agctgccaga caaacggacg aaaaccgacg ccctgcactt tgccacgaat acgcagttgg
    33001 acaccgcaag atgtgttttt tgccattgag ttattcccgc catcatgaat tgcgtaaccc
    33061 gcccagccgg acacgacagc gtcgcatccg gcagtcacag gtcggcgata ccgcctgctc
    33121 cgtattctac gaatatttcc gggaattcct ttgatgccag aacagttctg taagattttt
    33181 agaacatcag cgccgtacgg cggcgttttt ctgcactcag ttgttcaagt ttattacgat
    33241 cgacacaaat cagcgcatga gtcgggcaag ccgccataca cgccgggccg tcttcacgat
    33301 ggttgcacag gtcacattta ttggcttcgg ctttgtcagc ccgtacattc agccccgcgc
    33361 cgctgttgcg aatcaccgga cgtaccacca cttccatcgc gccatacggg caagccacaa
    33421 cgcaggtttt gcaaccaatg caacgttcct gcatcacatg aacaaaccct ttatcacggc
    33481 tgatagcacc attcgggcag acgttagcgc acggtgcatc ttcacactga cggcaaactg
    33541 tcgccgtgga aatgttcaca cctttaatga catggatacg cggtaaaaat gtttccgggg
    33601 tcagcgatgc acagtcctga ttttcctgat gagaaaccac gcacgccact tcacaggtac
    33661 ggcaaccaat acatttactc gcgtcagcaa tgatgaaacg gttcatcaaa ttctccagca
    33721 atgacagtta atgcgccgat acattcacaa atcatgccag tttttaattc actgttattt
    33781 aaggaaatta atttctgtaa tgcaggaaaa aagatgtcat cgacactagt gacgatgaca
    33841 tgtgatgaca atgtttatcg cgaaagagca atgagtgagt cgcggtggat cagttttccg
    33901 ctgaaggttt tcggcggtga gaaatccccg ccatcgagca taaaaatcag ccgtccaata
    33961 atttcctgaa tcatctcagt caccggaatt tttacgctgg agagcgccgg aacgatatag
    34021 ggggcaattg cgatatcatc gaatccgata actgacacct gctctggcac cgctacgccg
    34081 cgctcgtgca acgctttcat cgcacctatc gccatatcgt cgttactggc aactaacgcg
    34141 ctaaatttag ccccacgttc gagcaacgtt tctacccctt cggccccgct ggcgggcgtc
    34201 catttaccgt tagcgataag tttttcattg agcgcaatac catgctgcgc cagcgcgtct
    34261 ttatacccag caagacgttc aatgctggtg ggggaatcca tcgagccggt aaggaaagca
    34321 atctcctgat gtccggcgtt tatcaactct gccacggcat taaagctggt ctgtttatga
    34381 tcgcaccaga cgctatggct gctgtttttg cgcaggcggc gattaagcac cattatcggc
    34441 tgactgtgcg cgtcaatgat gtcatcgatc tcatccacgc ttaaaaaacg cgggtaaatc
    34501 ataatggcgt tgcagcgcaa atccagcaga tactgaatcg cctggcgctc ttcttcggcg
    34561 ctgtgtttac catctgccaa tagcaactgc cgccctttct cttccgccat tcgcgcggca
    34621 tgaaagagta attcactaaa ataaatgccg tggtaaagcg tgttggtcac taccagcccc
    34681 agcgtctgag tactcttcgc cgacagattg cgcgccagca agtttgggcg gtaaccgctc
    34741 tcttctaccg cctgaaacac gcgatcttta gtctcctggc tgacgtagcc attacctgaa
    34801 agcacgcggg aaacggtcgc ttttgaaacc ccggcgcgct tcgccacttc cagcatcgtc
    34861 gtcatcattt tcatcccttt acacgcaatc aacgcagtgt actgcaccgt ttgccgattg
    34921 tccttgcgca atcggcggga aaaatattca ggtgaccggt ttcacaaata taaaaaatga
    34981 ataattaact ctcttgctta tttagtgaca actattcatg attttgtgaa accggtttcc
    35041 taattccgtt tcagcatcgg catttttccg ttacgtcgac tgataacaac tacatctacc
    35101 ctactgataa caggataaaa tccgatggcc aaaaattatg cggcgctggc acgctcggag
    35161 atagcggcac tgggcggcgt tgataacatc tcggcggtca cgcactgtat gacgcgtttg
    35221 cgctttgtta tcaaagatga ccagcttatc gacagcccga cgttaaaaac catccccggc
    35281 gtgctcggcg tggtacgtag tgacaaccag tgtcaggtga ttatcggcaa taccgtttca
    35341 caagcctttc aggaagtcgt cagcctgctg ccgggagata tgcagcccgc acagcccgtg
    35401 ggtaaaccca aactcacgcc gcgtcgcatt ggtgtgggga tcctcgatgc gctgatcggc
    35461 accatgtcac cgctgatccc ggcgattatc ggcggatcga tggtcaaact gctggcgatg
    35521 atcctcgaga tgagcggcgt gctgacaaaa ggatcgccga ccttaaccat tctgaatgtg
    35581 attggtgacg gtgctttctt cttcctgccg ctgatggtcg cggcatctgc cgacatcaaa
    35641 tttaaaacca atatgtcgct ggcgattgcc atcgcgggtg tgctggtaca tccgagtttt
    35701 attgaactga tggcgaaagc ggcccagggt gaacatgtcg aatttgccct gattccggtc
    35761 accgcggtga aatacaccta cacagtgatc ccggcgctgg tgatgacctg gtgcctgtca
    35821 tatatcgaac gctgggtgga tcgcattaca ccggcggtga ccaaaaactt cctcaagcca
    35881 atgctgattg tgttgattgc cgcaccgctg gcaatcctgc tgattggccc gattggtatc
    35941 tggatcggta gcgccatttc ggcgctggtt tacagcattc atggttatct gggctggctt
    36001 tcagtcgcca ttatgggcgc gctgtggcct ctgctggtaa tgaccgggat gcaccgcgtc
    36061 tttacgccaa ccatcattca gaccattgcc gaaaccggca aagaagggat ggtcatgccg
    36121 tcagagatcg gcgctaacct gtcgctgggc ggttcatcac tggcggtggc gtggaaaacg
    36181 aaaaacccgg aactgcgcca gacggcgctg gctgcggcgg catcagccat tatggcgggg
    36241 atttccgaac cggcgttata cggcgtggcg atccgcctga aacgtccgct tatcgccagt
    36301 cttatcagcg gttttatttg cggcgcggtt gccggtatgg cggggcttgc cagccactca
    36361 atggcagcgc cggggctatt taccagcgtg caattcttcg atccggcgaa tccaatgagc
    36421 atcgtctggg tgttcgcggt catggcgctg gcggtggtgc tgtcgtttat cctcacactg
    36481 ttgctcggct ttgaggatat tcctgttgag gaagcggctg cccaggcgcg aaagcatcag
    36541 agcgtacaac cgaccgtcgc caaagaagta agtcttaatt gaggatgaaa atgtcagtat
    36601 ttccagaagg ttttttatgg ggcggcgcgc ttgccgccaa ccagtctgaa ggtgcgttcc
    36661 gtgaaggcgg aaaagggctg accaccgtcg atatgatccc acacggcgag catcgaatgg
    36721 cggtgaaact ggggctggaa aaacgttttc agttgcgcga tgacgagttt tatcccagcc
    36781 atgaggcgac ggatttttat catcgttata aagaagatat cgccctgatg gcagagatgg
    36841 gattcaaggt tttccgtacc tcaattgcct ggagccgtct ctttccgcag ggcgatgaaa
    36901 tcacgcccaa tcagcagggc attgcttttt atcgttctgt ctttgaagag tgtaaaaagt
    36961 acggtatcga accgctggtc acgttgtgcc acttcgatgt gccgatgcat ctggtcaccg
    37021 aatatggctc ctggcgtaac cgcaagctgg tggagttttt cagccgctac gccagaacct
    37081 gctttgaagc atttgatggt ctggtgaaat actggctaac cttcaatgaa atcaacatta
    37141 tgttgcatag cccgttctcc ggcgcgggtc tggtgtttga agaaggtgaa aatcaggatc
    37201 aggtgaaata tcaggccgcg catcaccagc tggttgccag tgcgctagcc gccaaaatcg
    37261 cccatgaggt taacccgcaa aatcaggtgg gctgtatgct ggcgggcggc aacttctacc
    37321 cttacagctg caaaccggaa gatgtctggg cggcgctgga gaaagatcgg gaaaacctgt
    37381 tttttatcga tgtgcaggcg cgcggcgcgt atccggctta ctctgcccgc gtatttcgcg
    37441 aaaaaggggt aaccatagat aaagcgctgg gcgatgatga gatcctgaaa aacaccgtcg
    37501 attttgtctc tttcagctat tacgcctcgc gctgcgcctc ggcggagatg aacgccaaca
    37561 acagcagtgc ggcgaacgtg gtgaaatcgc tgcgtaaccc gtatctgcaa gtgagcgact
    37621 ggggctgggg aattgatcca ctcggtctgc gtatcaccat gaatatgatg tacgatcgtt
    37681 atcagaagcc gctgtttctg gtggaaaacg gcctcggcgc aaaagatgaa cttgctgcca
    37741 atggcgagat taacgatgac tatcgcatca gctatttacg cgaacatatc cgcgcaatgg
    37801 gcgaagcgat tgcagatggc attccgctga tgggctacac cacatggggc tgtattgatt
    37861 tagtttccgc ctctacgggt gaaatgagca aacgctacgg ttttgtctac gtagaccgtg
    37921 acgacgcagg caacggcacg ctgacgcgca cacgtaagaa atcgttctgg tggtataaaa
    37981 aagtgattgc cagtaatggg gaagatttag agtaagtaac agtgccggat gcggcgtgaa
    38041 cgccttatcc ggcctacatg tcgcacgaac caggaaggcc cgataagcgc agcgcatcgg
    38101 gcaatttagc atttggcatc agagctggtt caccccatca agaacatccc tgtcctgatt
    38161 ccttaatgaa aaactactct tcttccaccg ctaactgcgc gaagccgcca ttcccttccc
    38221 agccttccag tcgttgataa acggtttcta ccgcatcttt aatcggctgg gtcatcgggt
    38281 agtaaaagcc gacgatatcc ggctgtatgc cgaggaaaat cacttcgcca atatcttctt
    38341 tcaactggtc gataagatag ttcagaggca tgttatgggt agtcatcata aacatctcgg
    38401 cgatatcatc cgggtcgatg atgcggatct cgccggggtt tagccccata tccgtggcgt
    38461 cgacaatcag taaccgcgta gggcgcagtt cacggatggc gacgatgtcg ttttccggtg
    38521 cactaccgcc gtcaatcacc acccagttac ctttcggcgc ggcggcgcac ttttccgcca
    38581 gcagcggacc tgcgccatca tcgcccatca tgctattgcc aacacagagt aaaacgtcag
    38641 tcacgcaatc tcctcaccat caaatagatg gcgttttcct gatgaatatc atgcagcata
    38701 cttaacagca ttgtactcca ttcctgctgc tgcgaagttt gcgctgcccg ggctttatcg
    38761 aatgcgttgg ccagcatcgg cacatggtta atgtcgatga cgatctcacc gtacttcggt
    38821 acgccttcca ttttgcggcg ggcttcactg cccgcctcca gagtggcaat ccatgccaga
    38881 tattcatccc acgggcaggt gagcgccgct tccaggcaat cgataacccc aaggtggtga
    38941 ccaatcgcca ggctgtaata gaccacctgc tgcgcctcgg cgggcgtggc atcgttctca
    39001 tcaataaatt tacggctcag ttgactgaac accacctttt cactcatcgg atacgcacct
    39061 cttctacaac atgattcaga tggctgacaa tctcgttcag acgcggatcg ttttccgctt
    39121 ccagccagcg tgcaacctgt tcttcgccct gccctaactg tgtcaggaag tcatcggcaa
    39181 tctgacgacc gtaacgataa cccgccaggc ggcgtgcttc gcgatccact ttcacgcgca
    39241 gcggctgcac catatcgcca tgcaggatct ccgccggttg ttcatccagt tcacccggcc
    39301 cacgggcgtg aattttctgc tccagcaggc cgagcgccat tgcaaagccg tacagcgtgg
    39361 cggcaggcgt tggcgggcag ccagggatat aaacatccac agggacaatt ttatccgtac
    39421 cgccccacac gcagtagaga tcgtggaaga tcccgccgct gttaccgcag gcaccgtagg
    39481 agatacaaat tttcgggtcc ggcgcggact gccacgcacg cagcgcaggg gatcgcattg
    39541 cacgggtgac cgcgccggta aacagtaaaa tatccgcatg acgcggtgaa ggaacgactt
    39601 taatgccgaa gcgttctgca tcaaacagcg gcgataaagt ggcgaaaatt tcgatttcgc
    39661 agccgttgca gccgccgcag tccacgcggt aaacataggc agaacgtttg atttttttca
    39721 gtaacgacgc cttcatgctg gcgatggatt catccaccgt catcgggacc ggaatgccgt
    39781 tggcgtcacg ggggcctaat aaattgctca tcagatggcc tctttcatat ggcgagtcag
    39841 ttcaatacgg tcggacggca ccaggcattt ctggcgctta cattccgggc aagtctcaaa
    39901 gctttcgcgg tggttttccg cgcggctgtc gccgttgtgc ttaagcagcg caatggcgta
    39961 gtcgatctct ttctggacgg cgaaaggacg attgcagacg cgacagttgc acagcgcgaa
    40021 gcgagactgt tgcaggaagt cttctttctt ccacaccgcc agttcgtact cttgcgacag
    40081 cttaatcgcc gccgtcgggc aaacttcttc gcagcgtcca cagaagatgc agcgcccgag
    40141 attaaactcc caggccagct ctcctgtggc gaggtcagtt tcaaccgtta aggcgtttga
    40201 cgggcaggca ttgacgcagg ccgcgcagcc gatgcactgc tgcgggttct gctctggctt
    40261 accacggaag tttttatcaa ccgcaatcgg ctccagcgga taagacgagg tcgccgtacc
    40321 ggttttgata acttttttga taaaggtaaa catggcgatt ccttatttca gcggcgagtt
    40381 tttacgctca atgctgtagc gctcgagttc tttgtacggc accactttgc tcttcttctt
    40441 acgtacatcg accacagtca tgcggtcggt acaggagtag caagggtcca ggctaccgat
    40501 aatcagcggc gcatcggaaa cagtgttgcc acgcagcatg tagcgcaggg tcggccagtt
    40561 cgcgtaggtc gcggcacggc agcgccagcg gtacagcttc tggttgtcgc cagtcatgct
    40621 ccagtggata tcatcaccgc gcggcgcttc ggcaaagccc agcgcgaaac ggtgcggaat
    40681 gtaggtaaag ccttccacca tcagcgggcc acccggcagg ttatccagac cgtagtcgat
    40741 catgttcagc gcggtataga cttcgttgat acgcactttc agacgcgaaa taacgtcgca
    40801 gccctgctcg ctgtggactt ccattggcag caggccataa ccaacaaacg ggtgatcagc
    40861 gcgggtatcg cgagcgtgtc cgctggcgcg gaccatcggg ccaacgttac tgaaatcgcg
    40921 ggcaatttcc gggtccagac gaccaatgcc gacggtgcgc tgttccatgt tcggtgtgct
    40981 cagcagcaca tccaccagct cctgcacttc acgacgcatc tgttgcgcca gctggcgggt
    41041 ctggatcatg tcatctttca acagatcgcg acgaatcccg ccgatcaggt tcaggccgta
    41101 ggttttacgc gcaccggtga ggatctcggc cattttcatg gaggtttcac gcacgcggaa
    41161 gaattgcata aagccggagt cgaagccggt aaagtggcag gcgaggccga ggttgagcag
    41221 atgcgagtgc aggcgttcca cctccagcag aatggcgcgg atcatctgcg cacgttctgg
    41281 cacctgaata cccatcgcgt tttccaccga cgtggtgtag gcggtgctgt gggcgaagcc
    41341 gcagatcccg cacacacggt cagagaggaa ggtcacttcg ttataaccca tgcgggtttc
    41401 cgccagtttt tccataccgc gatggacata gaacaagcgg tagtctgcgt cgataatgtt
    41461 ttcgccatcg acgaacagac ggaagtggcc cggttcgtca gaagtgacgt gcagcggacc
    41521 aatcggcacg acgttgtttt tcttgtcgcc cagttcgttg atgaactcgt aggtttcagc
    41581 atcggtggtc ggtgccggac gctgacgata atccatgctg tctttacgca gcggataaag
    41641 ttcatccggc cagtcatccg gcagcaccag acggcgttca tccggcagac caaccggaat
    41701 caaaccgtac atatcgcgca cttcgcgctc gccccacacc gccgccggaa cgcgcggcgt
    41761 cacggacgga tactccggtt tgttggcatc aacttcgacg cgaaccgtta cccagcactt
    41821 agtccccttc tccatcgaca gcacgtaata aacggcgtaa tgaccattca gtttgcgttc
    41881 gtcgttacca aaaagcaccg acagccagcc cccctgcttg tagtagagaa actccaccac
    41941 ttccggcaga tagttcacct ttacggtgac agtcagctga tctttggtct gccaggcgtg
    42001 gtccagcacg acgcccggaa atgcctcatt cagcgcggcg agataatgtt gacctaattt
    42061 ttcttcagac atgctcaaac tctctttaat cacgccgcca gcaaggagac gaacgctaaa
    42121 aatgcaaagc caaacccagc ccaggtaatg cgcggagtaa tatcaagacg cagacgggcc
    42181 atgctgtttt cgaacagcgc gataaccagg acgccgacca ccagttttac gatcgcaatc
    42241 accagcgcca gcagcagtcc accggcggtg aaggtttcca tttgtcccca cggaataaac
    42301 accccgacga acatctgcaa caccaccagc tgtttcaggc tgatacccca tttcatgacg
    42361 ccaaagccgc tgccgctata ctcagagagc ggaccttcct gcaactcctg ctcggcttcc
    42421 gccaggtcga acggcagttt gcccatttcg ataaaagtgg cgaacgcaca ggcgcagagc
    42481 gccagcacca gcgggatgct ttggctcagc ggccagtgat aaacggtgtc ggtaatgttg
    42541 ctgatgttgg tggaaccggc aacctgtgcg gcaacccaca gaccaagcag caacatcggt
    42601 tcgaccagca cgccaagcat cgcttcacgg ctcgcaccga tagcggtaaa cgggctaccg
    42661 gtatccagac cggaaatggc aaagaagaaa cgcgcgatgg cgaagagata cagtaaggtg
    42721 atcaaatcgc ccagttgcgg cagcggagaa ccgacggtca ccaccggcag cgcagtagcg
    42781 atagtcagca tgacgcccac catcacatac ggcgtcaggc ggaacaccca gccagaggca
    42841 tccgggccaa cgctctggcg gcccagcagt ttgataatgt cgcgatactc ctgcaacacg
    42901 cccggcccgc gacggttatg cagacgggcg cgcgccacgc gggtaatacc ggagagcagc
    42961 ggcgcaacgg caaataacac cagcgcctga attaacggat ataaaacact cattctcagg
    43021 ctcctcgtga aacaataatc accaccagta ccgccagttc aaccagcgcc atccggcgga
    43081 acagcaacgc actaccttcg cactgccagc ccggcaccag cgacaccgga ttcagccatt
    43141 tgcgcagttt cagcactggc gcaaacgcct gtttaaccgg catggcaaaa ccgtgagcgg
    43201 taatcaccat tgatttttca tggtcgtagc cgcacaccca ggccgcaccg cgggaacgtg
    43261 acggcaggcg gtcgcctttg caaatcgcca taatgatgaa tggcagcagc gggcaggcaa
    43321 tcagcagcaa tgtgatcatt ggttgagaaa cggtggtgtt agcaggctcc agaggcagag
    43381 gtacggcagc agagagcatc ggcagcagcc acggcgcagc aacaccgcca attacgcagc
    43441 aaatcgccag tgccactacg cttacgctca tcaggagcgg cgcacaggtg gcgttttcgg
    43501 cttctttggt acgcggcgcg ccgaggaacg tgacgccata gactttcgcc atacacatca
    43561 ccgccagcgc accggtaatt gccagaccca cagcgagcag cggccccagc agacgggcaa
    43621 caaacgcgcc actattgctc agtttgaaaa aggattgata gataacccat tccccggcaa
    43681 acccgttcag cggcggcagc gcagccattg ccatcaaccc gactaacatg gcgatggaga
    43741 taaccggcat tttcttgcca ataccaccga gtttttcgat atcgcgatga ccggtacgga
    43801 accagacgct ccccgccccg aggaacagta cgcttttgaa caggctatgg ttaagcagat
    43861 ggtacagacc accgaccagg ccaagagcaa tcagcgccgg ttgttcgagc gcgatacccg
    43921 ttacgccagc gcccagcccc agcaggataa tgccgatatt ttccagggtg tggtaagcca
    43981 gcaggcgctg gatgttgtgc tccatcagcg catacagacc accgacaaac gcggtgatca
    44041 tgccgagcac cagcagcacg atcccccacc acagcggtgc attaccgccc agcagtgaca
    44101 gggttaaaat gcccagcagg ccaattttca tgactaccgt agaaaacaac gcggcagctg
    44161 gcgcagaggc gttagcatgt gcctgcggca cccagccgtg cagcggaata atcccggcga
    44221 gcaggccaaa gccaatcaca ccgagcagcc agatatcgga accgagcggc agctgttgca
    44281 tacgcatatc cagcaggcgc agatccagcg tgccataacg ctgccacagc agccagcaag
    44341 caatcgccag cagcagagtg ccaagacgcc ccagcgcaaa ccacagtttg ccctcttttg
    44401 tttcgacgta atactcgatg gtgtggctgt taaagccatc cgccagggtg acgtaaatac
    44461 gaaaatgttc aaaaaggacg aaacagagtt ctttgtccgg cgcgcagctc atggcgtgat
    44521 gcaggcgcgc tttcgataac gtgatcccct gaaccagcga attgcagtag atgtgccact
    44581 ggtcctgtag gcgacgatgc cgctgtgcga tgtaatcggc tttctcgctt atttcccaaa
    44641 tagtcattgt caggttaccc gtttaacaga gatgccagct ttaagcattt tctgtgccaa
    44701 tttttaattt attgttatta aaacgatttt taagctaaag atgaatttcg tcgccgtgtc
    44761 gacgtgtcat ttcgacatca tcgacattat tcaccgcagg gataatcaac actggcacaa
    44821 ttattgcttg tagctggcaa tagttaatgg gaggcgatat gcacgaaata accctctgcc
    44881 aacgggcact ggaattgatc gaacagcagg ccgcaaaaca cggcgcaaaa cgcgtaactg
    44941 gggtctggct caaaattggc gcattttctt gtgtcgaaac cagctctctt gccttttgtt
    45001 ttgatctggt ttgccgcggc agcgtggcgg aaggttgtaa actgcacctc gaagaacaag
    45061 aggtcgaatg ctggtgtgaa acatgccaac agtatgtgac gctattgacc cagcgcgtcc
    45121 gccgctgtcc acagtgtcat ggtgacatgc tacagattgt ggcagacgac ggtttacaga
    45181 ttcggcggat agaaatagac caggagtgag cgatgtgtac aacatgcggt tgcggtgaag
    45241 gcaacctgta tatcgagggt gatgaacata accctcattc cgcgtttcgt agcgcgccat
    45301 ttgccccggc ggcacgcccg aagatgaaaa tcaccggcat taaagcgcct gaatttaccc
    45361 ccagccagac tgaagaaggc gacctgcatt acggtcatgg cgaagcgggc actcacgcac
    45421 cgggcatgag ccagcgtcgg atgctggaag tcgaaattga cgtgctggac aaaaacaacc
    45481 gtctggctga acgcaaccgc gcgcgctttg ctgcccgcaa gcaactggtg ctcaacctgg
    45541 tttccagccc aggttccggt aaaaccaccc tgctgacgga aaccctaatg cgcctgaaag
    45601 acagcgttcc gtgcgcggtt attgaaggtg accagcaaac cgtgaacgat gccgcacgca
    45661 ttcgcgctac cggcacacca gcgattcagg tgaacacagg taaaggctgc catcttgacg
    45721 cacagatgat tgccgacgcc gcaccgcgtc tgccactgga cgataacggt attctgttta
    45781 tcgaaaacgt tggcaacctc gtatgcccgg ccagcttcga tctcggtgaa aaacacaaag
    45841 tggcggtgct ttccgttacc gaaggtgaag acaaaccgct gaaatatccg catatgtttg
    45901 ccgccgcctc gctgatgctg ctcaacaaag ttgacctgtt gccgtatctc aactttgacg
    45961 ttgagaagtg catcgcctgc gcccgcgaag tcaatccaga aattgaaatc atccttattt
    46021 ccgccaccag cggtgaaggg atggaccagt ggctgaactg gctggagaca cagcgatgtg
    46081 cataggcgtt cccggccaga tccgcaccat tgacggcaac caggcaaaag tcgacgtctg
    46141 cggcattcag cgcgatgtcg atttaacgtt agtcggcagc tgcgatgaaa acggtcagcc
    46201 gcgcgtgggc cagtgggtac tggtacacgt tggctttgcc atgagcgtaa ttactgaagc
    46261 cgaagcacgc gacactctcg acgccttaca aaacatgttt gacgttgagc cggatgtcgg
    46321 cgcgctgttg tatggcgagg aaaaataatg cgttttgttg atgaatatcg cgcgccggaa
    46381 caggtgatgc agttaattga gcatctgcgc gaacgtgctt cacatctctc ttacaccgcc
    46441 gaacgccctc tgcggattat ggaagtgtgc ggtggtcata cccacgctat ttttaaattc
    46501 ggcctcgacc agttactgcc tgaaaacgtt gagtttatcc acggtccggg ttgccctgtg
    46561 tgcgtactgc cgatgggtag aatcgacacc tgcgtggaga ttgccagcca tccggaagtc
    46621 atcttctgta cctttggcga tgccatgcgc gtaccaggga aacagggatc gctgttgcag
    46681 gcaaaagcac gcggtgccga tgtgcgcatc gtttactcgc cgatggatgc gttgaaactg
    46741 gcgcaggaga atccaacccg caaagtggtg ttcttcggct taggttttga aaccaccatg
    46801 ccgaccaccg ccatcactct gcaacaggcg aaagcgcgtg atgtgcagaa tttttacttc
    46861 ttctgccagc acattacgct tatcccgacg ctgcgcagtt tgctggaaca gccggataac
    46921 ggtatcgacg cgttcctcgc gccgggccac gttagtatgg ttatcggcac tgatgcctat
    46981 aattttatcg ccagcgattt tcatcgtccg ctggtggtcg ctggtttcga accccttgat
    47041 ctactgcaag gcgtggtgat gctggtggag cagaaaatag cggcccacag caaggtagag
    47101 aatcagtatc gtcgggtggt accggatgcc ggtaacctgc tggcgcaaca ggcgattgcc
    47161 gatgtgttct gtgtcaacgg cgacagcgaa tggcgcggct taggcgtgat tgaatcttct
    47221 ggcgtgcacc tgacgccgga ttatcaacga ttcgatgccg aagcacattt ccgcccggca
    47281 ccgcagcagg tctgcgatga cccgcgcgcg cgttgtggtg aggtattaac gggcaaatgt
    47341 aagccgcatc aatgcccgct gtttggtaac acctgtaatc ctcaaaccgc atttggtgca
    47401 ctgatggtct cctccgaagg agcgtgcgcc gcgtggtatc agtatcgtca gcaggagagt
    47461 gaagcgtgaa taatatccaa ctcgcccacg gcagcggtgg ccaggcgatg cagcaattaa
    47521 tcaacagcct gtttatggaa gcctttgcca acccgtggct ggcagagcag gaagaccagg
    47581 cacgtcttga tctggcgcag ctggtagcag aaggcgatcg tctggcgttc tccaccgaca
    47641 gttacgtcat tgacccgctg ttctttcctg gcggtaatat cggcaagctg gcgatttgcg
    47701 gcaccgcgaa tgacgttgcg gtcagtggcg ctattccgtg ctatctctcc tgtggcttta
    47761 tcctcgaaga aggattgccg atggagacac tgaaagccgt agtgaccagc atggcagaaa
    47821 ccgcccgcac ggcaggcatt gccatcgtta ctggcgatac taaagtggtg cagcgcggcg
    47881 cggcagataa actgtttatc aacaccgctg gcatgggcgc aattccggcg aatattcact
    47941 ggggcgcaca gacgctaacc gcaggcgatg tattgctggt tagcggtaca ctcggcgacc
    48001 acggggcgac tatccttaac ctgcgtgaac aactggggct ggatggtgaa ctggtcagcg
    48061 actgcgcggt gctgacgccg cttattcaga cgctgcgtga cattcccggc gtgaaagcgc
    48121 tgcgtgatgc cacccgtggt ggtgtaaacg cggtggttca tgagttcgcg gcagcctgcg
    48181 gttgtggtat tgaaatttct gaatcagcac tgccggttaa acctgctgtg cgcggcgttt
    48241 gcgaactgct gggactggac gcccttaact ttgccaacga aggcaaacta gtaatagctg
    48301 ttgaacgcaa cgcagcagag caagtgctgg cagcgttaca ttcccatcca ctggggaaag
    48361 acgcggcgct aattggtgaa gtggtggaac gtaaaggtgt tcgtcttgcc ggtctgtatg
    48421 gtgtgaaacg aaccctcgat ttaccacacg ccgaaccgct tccgcgtata tgctaataaa
    48481 attctaaatc tcctatagtt agtcaatgac cttttgcacc gctttgcggt gctttcctgg
    48541 aagaacaaaa tgtcatatac accgatgagt gatctcggac agcaagggtt gttcgacatc
    48601 actcggacac tattgcagca gcccgatctg gcctcgctgt gtgaggctct ttcgcaactg
    48661 gtaaagcgtt ctgcgctcgc cgacaacgcg gctattgtgt tgtggcaagc gcagactcaa
    48721 cgtgcgtctt attacgcatc gcgtgaaaaa gacaccccca ttaaatatga agacgaaact
    48781 gttctggcac acggtccggt acgccgcatt ttgtcgcgcc ctgatacgct gcattgcagt
    48841 tacgaagaat tttgtgaaac ctggccgcag ctggtcgctg gtgggctata ccccaaattt
    48901 ggtcactatt gcctgatgcc actggcggcg gaagggcata tttttggtgg ctgtgaattt
    48961 attcgttatg acgatcgtcc ctggagcgaa aaagagttca atcgtctgca aacatttacg
    49021 cagatcgttt ctgtcgtcac cgaacaaatc cagagccgcg tcgtcaacaa tgtcgactat
    49081 gagttgttat gccgggagcg cgataacttc cgcatcctgg ttgccattac caacgcggtg
    49141 ctttcccgcc tggatatgga cgaactggtc agcgaagtcg ccaaagaaat ccattactat
    49201 ttcgacattg acgatatcag tatcgtctta cgcagccacc gtaaaaacaa actcaacatc
    49261 tactccactc actatcttga taaacaacat cccgcccacg aacagagcga agtcgatgaa
    49321 gccggaaccc tcaccgaacg cgtgttcaaa agtaaagaga tgctgctgat caatctccac
    49381 gagcgggacg atttagcccc ctatgaacgc atgttgttcg acacctgggg caaccagatt
    49441 caaaccttgt gcctgttacc gctgatgtct ggcgacacca tgctgggcgt gctgaaactg
    49501 gcgcaatgcg aagagaaagt gtttaccact accaatctga atttgctgcg ccagattgcc
    49561 gaacgtgtgg caatcgctgt cgataacgcc ctcgcctatc aggaaatcca tcgtctgaaa
    49621 gaacggctgg ttgatgaaaa cctcgccctg accgagcagc tcaacaatgt tgatagtgaa
    49681 tttggcgaga ttattggccg cagcgaagcc atgtacagcg tgcttaaaca agttgaaatg
    49741 gtggcgcaaa gtgacagtac cgtgctgatc ctcggtgaaa ctggcacggg taaagagctg
    49801 attgcccgcg cgatccataa tctcagtggg cgtaataatc gccgcatggt caaaatgaac
    49861 tgcgcggcga tgcctgccgg attgctggaa agcgatctgt ttggtcatga gcgtggggct
    49921 tttaccggtg ccagcgccca gcgcattggt cgttttgaac tggcggataa aagctccctg
    49981 ttcctcgacg aagtgggcga tatgccactg gagttacagc cgaagttgct gcgtgtattg
    50041 caggaacagg agtttgaacg tctcggcagc aacaaaatca ttcagacgga cgtacgttta
    50101 attgccgcga ctaaccgcga tctgaaaaaa atggtcgccg accgagagtt ccgtagcgat
    50161 ctctattacc gcctgaacgt attcccgatt cacctgccgc cactacgcga gcgtccggaa
    50221 gatattccgc tgctggcgaa agcctttacc ttcaaaattg cccgtcgtct ggggcgcaat
    50281 atcgacagca ttccagccga gacgctgcgc accttgagca acatggagtg gccgggtaac
    50341 gtacgcgaac tggaaaacgt cattgagcgc gcagtattgc taacacgcgg caacgtgctg
    50401 cagctgtcat tgccagatat tgctttaccg gagcctgaaa cgccgcctgc cgcaacggtt
    50461 gtcgctcagg agggcgaaga tgaatatcag ttgattgttc gcgtgctgaa agaaaccaac
    50521 ggcgtggttg ccgggcctaa aggcgctgcg caacgtctgg ggctgaaacg cacgaccctg
    50581 ctgtcacgga tgaagcggct gggaattgat aaatcggcat tgatttaact gcaaattgcc
    50641 ggacagatct gcctgtccgg catactattc acgaggtttt ttcggacgat atttttccgg
    50701 cagttctggc accggacgct tgtcatcgat gagatgacgc acggttaaga tcggatgacg
    50761 ccacagcatt ctcggcccgg cccaacgcat aatctgtttc atctcttcac gctttgcagg
    50821 ctggtaacag tgcaccggac actgcttaca ggctggtttc tcttcgccga acacacattt
    50881 atccagccgc ttttgcgcgt aaacaaacaa cgcctcgtaa tgctccggct ccgctgacgc
    50941 ctgcgggcat ttcgcttgat aaagatcgat cattttttta atcgtcagtt tttcacgaga
    51001 gatacgcttg ccggacatgc tgcctccata ctcttaaggt gtatttatat tacaacttaa
    51061 tttgaaaggg gactatggct ctgaaggagg aggtttattc aaccgacgca attttgcgta
    51121 cttgcttcat aagcatcacg caaaagctgc aaaacagcat ctttcccgga accagcatca
    51181 agaactcgcc gttcgcttct tcccctgaaa tgattaactc cggtatcatg tgcgccttat
    51241 gtgattacaa cgaaaataaa aaccatcaca ccccatttaa tatcagggaa ccggacataa
    51301 ccccatgagt gcaatagaaa atttcgacgc ccatacgccc atgatgcagc agtatctcag
    51361 gctgaaagcc cagcatcccg agatcctgct gttttaccgg atgggtgatt tttatgaact
    51421 gttttatgac gacgcaaaac gcgcgtcgca actgctggat atttcactga ccaaacgcgg
    51481 tgcttcggcg ggagagccga tcccgatggc ggggattccc taccatgcgg tggaaaacta
    51541 tctcgccaaa ctggtgaatc agggagagtc cgttgccatc tgcgaacaaa ttggcgatcc
    51601 ggcgaccagc aaaggtccgg ttgagcgcaa agttgtgcgt atcgttacgc caggcaccat
    51661 cagcgatgaa gccctgttac aggagcgtca ggacaacctg ctggcggcta tctggcagga
    51721 cagcaaaggt ttcggctacg cgacgctgga tatcagctcc gggcgttttc gcctgagcga
    51781 accggccgac cgcgaaacga tggcggcaga gctgcaacgc actaatccgg cggaactgct
    51841 gtatgcagaa gatttcgccg agatgtcgct gattgaaggc cgtcgcggcc tgcgccgtcg
    51901 cccgctgtgg gagtttgaaa tcgacaccgc gcgccagcag ttgaatctgc aatttggcac
    51961 ccgcgatctg gtcggttttg gcgtcgagaa cgcgccgcgc ggactttgtg ctgccggttg
    52021 tctgttgcag tatgcgaaag atacccaacg cacgaccctg ccgcatattc gttctatcac
    52081 catggaacgt gagcaggaca gcatcattat ggatgccgcg acacgtcgta acctggaaat
    52141 tactcagaac ctggcgggcg gtgcggaaaa tacgctggct tctgtgctcg actgcaccgt
    52201 cacgccgatg ggtagtcgta tgctgaaacg ctggctgcat atgccagtgc gcgatacccg
    52261 cgtgttgctt gagcgccagc aaactattgg cgcattgcag gatttcaccg ccgggctaca
    52321 gccggtactg cgtcaggtcg gcgaccttga acgtattctg gcacgtctgg ctttacgaac
    52381 tgctcgccca cgcgatctgg cccgtatgcg ccacgctttc cagcaactgc cggagctgcg
    52441 tgcacagtta gaaactgtcg atagtgcacc ggtacaggcg ctacgtgaga agatgggcga
    52501 gtttgccgag ctgcgcgatc tgctggagcg agcaatcatc gacacaccgc cggtgctggt
    52561 acgcgacggt ggtgttatcg catcgggcta taacgaagag ctggatgagt ggcgcgcgct
    52621 ggctgacggc gcgaccgatt atctggagcg tctggaagtc cgcgagcgtg aacgtaccgg
    52681 cctggacacg ctgaaagttg gctttaatgc ggtgcacggc tactacattc aaatcagccg
    52741 tgggcaaagc catctggcac ccatcaacta catgcgtcgc cagacgctga aaaacgccga
    52801 gcgctacatc attccagagc taaaagagta cgaagataaa gttctcacct caaaaggcaa
    52861 agcactggca ctggaaaaac agctttatga agagctgttc gacctgctgt tgccgcatct
    52921 ggaagcgttg caacagagcg cgagcgcgct ggcggaactc gacgtgctgg ttaacctggc
    52981 ggaacgggcc tataccctga actacacctg cccgaccttc attgataaac cgggcattcg
    53041 cattaccgaa ggtcgccatc cggtagttga acaagtactg aatgagccat ttatcgctaa
    53101 cccgctgaat ctgtcgccgc agcgccgtat gttgattatt accggcccga acatgggcgg
    53161 taaaagtacc tatatgcgcc agaccgcact gattgcgctg atggcctaca ttggcagcta
    53221 tgtaccggca caaaaagtcg agattggacc tatcgatcgc atctttaccc gcgtaggcgc
    53281 ggcagatgac ctggcttccg ggcgctcaac ctttatggtg gagatgactg aaaccgccaa
    53341 tattttacat aacgccaccg aatacagtct ggtgttaatg gatgagatcg ggcgtggaac
    53401 gtccacctac gatggtctgt cgctggcgtg ggcgtgcgca gaaaatctgg cgaataagat
    53461 taaggcattg acgctgtttg ccacccacta tttcgagctg acccagctac cggagaaaat
    53521 ggaagacgtc gccaacgtgc atctcgatgc gctggagcac ggagacacca ttgcctttat
    53581 gcatagcgtg caggatggcg cggcgagcaa aagctacggc ctggcggttg cagctctggc
    53641 aggcgtgcca aaagaggtga ttaagcgcgc acggcaaaaa ctgcgtgagc tggaaagcat
    53701 ttcgccgaac gccgccgcta cgcaagtgga tggtacgcaa atgtctttgc tgtcagtacc
    53761 ggaagaaacc tcgccagcgg tcgaagctct ggaaaacctg gacccggatt cactgactcc
    53821 gcgtcaggcg ctggaatgga tttatcgctt gaagagcctg gtgtaataac aattcccgat
    53881 agtcttttgc tatcgggaat attaacgaca actgacgaat aaaataaaaa ccccctgtat
    53941 aataggaaag cttattttac agggtaaaac catgccatct acacgctatc aaaaaattaa
    54001 tgcccatcac tatcgccata tatgggtcgt tggtgatata catggtgaat atcaattatt
    54061 acaatcccgc ttacatcaac tctctttttg ccctgaaacc gacttactta tttctgtcgg
    54121 cgataatatt gatcgtgggc cggagagtct tgacgtcctg cgcctgctaa accagccctg
    54181 gtttatctcc gttaaaggca accacgaagc aatggagctg gatgcgttcg cgaccggcga
    54241 tggcaatatg tggcttgcca gcggtggtga ctggtttttc gatttaaatg attcagagca
    54301 acaagaggca atagatctgt tgctgaaatt ccatcacctt ccacatatta ttgaaatcac
    54361 taacgacata ataaaatatg tcatcgcaca tgcagattat ccgggtgatg aatatctctt
    54421 tggcaaagaa atagcggaga gcgaattact ctggcctgtt tatcgtgtgc agaaatcgct
    54481 taatggcgag ttacaacaaa taaacggcgc tgattatttt atatttggac atatgatgtt
    54541 tgataacatt cagacgttcg ctaaccagat ttatattgat accggatcgc cgaaaagtgg
    54601 gcggctgtca ttttataaaa taaggtagtc tcatgcttct tctgtgaagc atgagtaacc
    54661 agatgttatt gcaggccatt attcattttt cgctaccagc aaagagagat cctgcttcgc
    54721 cagcgcgcga ctggcactct ccggcaaacc gtcgtctgta ataatctgat caaactcgct
    54781 taatggtaac gccagccatg tcgccacctg accatatttc gtcgcatcac agaccaaaac
    54841 tcgctggcgg ctggcactag caatcgcccg tttcaccgtg actttatctt ccgctggcgt
    54901 agaaatcccc cgcacactcc atgacgatgc agaaataaaa gcctgatcaa tcatcaggct
    54961 gcgcagcatg gtcgcagcgg cttccccgac acaggaacgg ttttcccgac acactgcacc
    55021 gccagtgtga ataattgtgc aattactgtt gtcgagcaag tagttcgcaa taacgaaatc
    55081 gtttgtgacc acagtcagtg actccatgtg aatcagatgc tgtgctatcg ctaacgtggt
    55141 cgttcctgca tccagataga tacaacttcc cggctgaaca agacttgccg ccagcttgcc
    55201 aatagccgct ttttgcgtca ttgctagcgc agtttttacc tgatgagaag gttcatgcgc
    55261 cacgcgtccc ggagactgga cgcctccgga caccagcaca acggctccct gctgctccag
    55321 tttttgtaaa tcccgacgaa tggtcatatg tgatacattc attctgtccg ttagttcagc
    55381 aatactgaca atgccttttt cagctaccat ctcaaggatg atttggcgac gctctacggg
    55441 tatcaacttt tgctccttcc tttgtcctgc tgacattcta cgctatttgc ctgcgaaacg
    55501 tgcgcggcgc aactaacgct tagttcacat aaaataacac acaatgttaa tttatgtgaa
    55561 tcggctcacc atatcgttat cttccagcgc ttatattcac aatatcaaac aaaatatcac
    55621 ttaaattaac aaggagagca gatgaaaacg ggatctgagt ttcatgtcgg tatcgttggc
    55681 ttagggtcaa tgggaatggg agcagcactg tcatgtgtcc gcgcaggtct ttctacctgg
    55741 ggcgcagacc tgaacagcaa tgcctgcgct acgttgaaag aggcaggtgc ttgcggggtt
    55801 tctgataacg ccgcgacgtt tgccgaaaaa ctggacgctc tgctggtgct ggtggtcaat
    55861 gcggcccagg ttaaacaggt gctgtttggt gaaacaggcg ttgcacaaca tctgaaaccc
    55921 ggtacggcag taatggtttc ttccactatc gctagtgctg atgcgcaaga aattgctacc
    55981 gctctggctg gattcgatct ggaaatgctg gatgcgccag tttctggtga tgcagtaaaa
    56041 gccgctaacg gtgaaatgac tgtcatggcc tccggtagcg atattgcctt tgaacgactg
    56101 gcacccgtgc tggaagccgt tgccggaaaa gtttatcgca taggtgcaga accgggacta
    56161 ggttcgaccg taaaaattat tcaccagttg ttagcgggcg tacatattgc tgccggagcc
    56221 gaagcgatgg cacttgcagc ccgtgcgggg atcccgctgg atgtgatgta tgacgtcgtg
    56281 accaatgccg ccggaaattc ctggatgttc gaaaaccgga tgcgtcatgt ggtggatggc
    56341 gattacaccc cgcattcagc cgtcgatatt tttgttaagg atcttggtct ggttgccgat
    56401 acagccaaag ccctgcactt cccgctgcca ttggcctcaa cagcattgaa tatgttcacc
    56461 agcgccagta acgcaggtta cgggaaagaa gacgatagcg cagttatcaa gattttctct
    56521 ggcatcactc taccgggagc gaaatcatga tcaagattgg cgttatcgcc gatgatttta
    56581 ccggcgcgac ggatatcgcc agttttctgg tggaaaacgg tctaccaacg gtacaaatta
    56641 acggtgttcc aacaggtaaa atgccggaag caatcgacgc actggtgatc agcctgaaaa
    56701 cgcgctcctg tccggtggtt gaagccacac agcaatcgct ggcggctctg agctggttgc
    56761 aacagcaagg ttgcaaacag atctatttca aatactgctc tactttcgac agtacggcga
    56821 aaggtaatat cggcccggtt accgatgcat taatggatgc tctcgacacg ccgtttacgg
    56881 tcttctctcc ggccctgtcg gtcaacggac gtacggttta tcaggggtat ttgttcgtaa
    56941 tgaatcaact gctggccgaa tccgggatgc gccatcaccc ggtaaatccc atgaccgaca
    57001 gctatcttcc ccgtctggtt gaagcgcaat ccacagggcg ctgcggcgtc gtttcggcac
    57061 atgttttcga acaaggtgtg gatgccgttc gtcaagagct ggctcgctta cagcaagagg
    57121 gctaccgcta cgcggtgctt gatgcgctga ccgaacacca tctggaaatt cagggagaag
    57181 ccttgcgcga tgccccactg gtaacgggcg gttctggtct ggcgattggc ctggcccggc
    57241 agtgggcgca agaaaacggt aaccaggctc gcgaagcagg gcatccgctc gctgggcgcg
    57301 gcgtagtgct ctccggttca tgctctcaaa tgaccaaccg ccaggtggca cattaccgtc
    57361 aaattgcacc agcccgtgaa gttgatgtgg cacgctgcct ctcaaccgaa actctggccg
    57421 cttatgcaca cgaactggca gagtgggttc tgggccagga aagtgtactt gctccactgg
    57481 tttttgccac cgccagcact gacgcattgg cagcaattca acagcaatac ggtgcacaaa
    57541 aagccagtca ggcagtagaa actctgtttt ctcaactagc ggcgcggtta gcagcggaag
    57601 gcgtgacacg ctttattgtc gcaggcggtg agacctccgg cgtagtcaca cagagcctgg
    57661 gcataaaagg gtttcatatt ggcccaacca tttcccccgg cgtgccgtgg gtaaacgcac
    57721 tggataagcc tgtctcactc gcccttaaat ctggcaactt cggtgatgaa gccttttttt
    57781 cacgagccca aagagagttt ttatcatgag cgatttcgca aaagtagagc agtctttgcg
    57841 agaggagatg acgcggattg ccagttcatt ctttcagcgc ggctatgcaa ccggttcggc
    57901 tggcaatctg tcgctgcttt tacctgacgg gaatttactg gcgacaccga caggttcatg
    57961 cctgggcaat ctcgatccgc agcggctttc caaagtcgcc gcggatggcg aatggttaag
    58021 tggtgacaaa ccctcgaaag aggtgctctt tcatctggcg ctgtatcgca acaatccgcg
    58081 ctgtaaagcg gtggtgcatt tgcacagcac atggtcgacg gcgctttcct gcctgcaagg
    58141 gctggacagc agcaacgtta ttcgtccgtt cacaccatac gtggtgatgc ggatgggaaa
    58201 tgtcccgctg gtgccctatt accgaccggg cgataaacgc atcgcacagg atctggcgga
    58261 actggcagca gacaatcagg cttttttact ggcaaatcat ggcccagtgg tttgcggtga
    58321 aagcctgcaa gaagccgcca acaatatgga agagctggag gaaacggcaa agctgatttt
    58381 tattctcggt gaccgcccga tccgttatct gaccgcaggt gaaattgcgg aattaaggag
    58441 ttaatgcaat gcctcgtttt gcagctaatt tatccatgat gttcaccgaa gtgcctttta
    58501 ttgaacgctt cgccgcagcg cgaaaagccg ggttcgatgc tatggaattt ctgtttccct
    58561 atgactactc caccctgcaa atccaaaagc aactggagca aaaccatctg acactggcgc
    58621 tgttcaatac cgctcccgga gatattaatg cgggggaatg gggattatcc gcccttcccg
    58681 gacgtgagca cgaagcacac gcagacatcg acctggcact ggaatatgca ttggcgctca
    58741 attgtgaaca agtccatgtg atggcaggcg tcgtgcccgc tggcgaagat gctgaacggt
    58801 accgggcagt atttatcgat aatctccgct acgctgccga ccgctttgcg ccacacggca
    58861 agcgaatatt agttgaagca ctcagccccg acgttaagcc tcattatctc ttctccagcc
    58921 agtatcaggc actggctatt gttgaagagg ttgcgcgaga taacgtgttt attcaactag
    58981 atacttttca tgcgcaaaaa gtagatggca acctgacgca tttaatccgc gactacgctg
    59041 ggaaatatgc gcacgtacaa attgccggac tacctgatcg acatgaaccg gacgatggag
    59101 aaatcaacta tccgtggctg ttccgcctgt tcgatgaggt gggatatcag ggctggatcg
    59161 gttgtgaata taaacctcgt ggcctcaccg aagaagggct tggctggttt gacgcctggc
    59221 gctaattcgt taaatcccta attacaacgt acccatacat ccccccatct acggatgggg
    59281 taggttaact ataactttca gacagggttt cccatgtcca caattacatt gttatgcatt
    59341 gcgttagctg gcgtaatcat gctgttgctg ctggtcatca aggcaaaggt acaaccattc
    59401 gttgctctgc tcctcgtcag cctgttagtc gcacttgcgg cgggtatacc ggcgggcgaa
    59461 gtgggtaaag tgatgatcgc cgggatgggc ggtgtgcttg gttccgtcac tattattatt
    59521 ggtctgggcg ctatgctggg gcgtatgatc gaacactctg gtggtgcaga gtcactggct
    59581 aattatttca gtcgcaagtt aggtgacaaa cgaactatcg ctgcgctgac tctggcagcg
    59641 ttcttcctcg gtattcccgt cttctttgat gtcagcttta ttattcttgc gccaatcatt
    59701 tacggttttg ccaaggttgc caaaatatcg ccactcaaat ttggcctgcc tgtcgctgga
    59761 atcatgctaa ctgttcatgt ggcagtaccg ccgcatccag gccctgtcgc cacagcgggg
    59821 ttactccacg cagacatcgg ctggctaacc atcatcggta ttgcgatttc tattcccgta
    59881 gggattgttg gctactttgc agcgaaaata atcaataagc gccaatatgc gatgtcagta
    59941 gaagtactgg aacagatgca actggctccg gccagtgagg aaggcgcgac aaaattaagc
    60001 gataaaataa atccaccggg cgtcgcgctg gtcacctcgc taattgttat tcctatcgcg
    60061 attatcatga cgggtacggt ttccgcaaca ctgatgccgc cttcgcatcc cctgcttggt
    60121 acgctacagc tgatcggctc accaatggta gctctaatga ttgcgctggt gctggcattc
    60181 tggttattgg ctttacgtcg cggctggagc ttacaacaca ccagcgacat tatgggctca
    60241 gcccttccca ctgcggcggt agtgattttg gttactggtg ctggaggggt atttggcaaa
    60301 gtgctggtgg aatcgggcgt cggcaaagcc cttgccaata tgctacaaat gattgacctg
    60361 cctctgttac cagccgcatt tattatttca ctggctctgc gtgcatcgca ggggtcagca
    60421 accgtagcaa tcctgacaac cggcgggtta ctctcagaag cggtgatggg attgaatccg
    60481 attcagtgcg tattggtgac gctggcagcc tgctttggtg ggcttggcgc gtcacatatt
    60541 aatgactcag ggttctggat tgtgaccaaa tatctggggt tgtcggtagc agacggtctg
    60601 aaaacctgga cagtgttaac gaccattctc ggttttaccg gattcttaat tacctggtgc
    60661 gtatgggcgg taatttgacc ttaataaaaa ggtccgatgg gcatcggacc ttttattgtg
    60721 cacagaaaag gccagcctcg cttgagactg gcctttctga cagatgctta cttactcgcg
    60781 gaacagcgct tcgatattca gcccctgcgt ttgcaggatt tcacgcaaac ggcgcaggcc
    60841 ttcaacctga atctggcgaa cacgttcacg ggtgaggcca atttcacgac ctacatcttc
    60901 cagtgttgcc gcttcgtacc ccagcaaacc gaatcgacgt gccagcactt cacgctgttt
    60961 ggcgttcagc tcgaacagcc atttgacgat gctctgcttc atatcgtcat cttgcgtggt
    61021 atcttccgga ccgttctctt tttcatcggc caggatgtcc agcaacgctt tttcggaatc
    61081 accacccagc ggggtgtcta ccgaggtaat gcgctcgtta agacgaagca tacggctgac
    61141 gtcatcaact ggcttatcca gttgctctgc gatctcttcc gcacttggtt catggtccag
    61201 cttatgggac aactcacgtg cggttcgcag gtaaacgttc agctccttta cgatgtgaat
    61261 cggcaaacga atagtacggg tttggttcat aatcgcccgt tcaatcgtct ggcgaatcca
    61321 ccaggttgcg tatgttgaga agcggaaacc acgttccggg tcaaacttct ctaccgcgcg
    61381 gatcagcccc aggttgccct cttcgataag gtccagcaac gccagaccac gattgccata
    61441 acggcgggca atttttacca ccagacgcaa gttactctcg atcatccggc ggcgagaggc
    61501 gacatctcca cgcagtgcgc gacgcgcaaa ataaacttct tcttcggccg ttaacagtgg
    61561 tgaataacca atctcaccaa ggtaaagctg agtcgcgtcc aacactcgct gtgtggctcc
    61621 ctgcgataac agttcctctt cggccaaatc gttatcactg ggttcctctt ctactaaggc
    61681 cttttcgtca aaaacctcaa ctccgttctc atcaaattcc gcatcttcat ttaaatcatg
    61741 aactttcagc gtattctgac tcataaggtg gctcctaccc gtgatccctt gacggaacat
    61801 tcaagcaaaa gcctggttcc gccgatttat cgctgcggca aataacgcag cgggtttacg
    61861 gatttcccct tgtaacgaat ttcaaaatgc aagcgtgttg aactggttcc ggtgctaccc
    61921 atggttgcta ttttttgccc cgccttcact tcttgttgtt cccggaccag cattgtgtcg
    61981 ttatgggcgt aggcactcag gtaatcatca ttatgtttga tgataatcag attaccgtag
    62041 ccgcgcagcg cgttaccggc ataaacaacg cggccatctg cggtcgcgat aattgcctgt
    62101 cctttgctgc ctgcgatatc aatccccttg ttgcccccct cagaagcgcc aaaggtttcg
    62161 atcactttgc cctcagtcgg ccagcgccag gtggagatag gcgtactggt tgatgtactg
    62221 ctgacagttg gctcggttgt gcttgctgtt ggtaccgtta caggcgctgt gaccgtggtc
    62281 gcagctggct tgttgttcgg caacattttg ttagcactct gttcacccga agattcagaa
    62341 tacgtaattg tcggttgcga cgcaacagca acggtggaat tttgtgcagg cttgatcaca
    62401 actccttgct ctgctgcgtc ggcctgggta atggcatttc cgccagtgat tggcgtaccg
    62461 gaagcattac ccacctgcaa ggtctgacca acgttcagcg cgtatggtgc ctgaatattg
    62521 ttgcgctgag caaggtcacg gaaatcgttg ccagtaatcc aggcgatata gaaaagtgtg
    62581 tcgccttttt tcacggtata ggtactgccg ctataactgc ctttcggaat gttcccatac
    62641 tgacggttat agacgatgcg tccgttttcc atctgtaccg gctgctgagc tactggctgc
    62701 actggctgga tttgcggttg ctgggctgta gacgtcgtcc ccattttcgg cggcggcgta
    62761 atcaacatac cagaattggt atttgcaggc gcattgccat taacggagct gaccggtgcc
    62821 ggtggatttg aagtgtcaga acagcctgcc agccatagcg aaaccagtga caaagccgca
    62881 atgcggcgaa cggtgaattt tgggcttccc gcgctcattt atcccccagg aaaaattggt
    62941 taataaccag tgacataatt accgtgcaag gcaccctact gaacactgga aaagatgttc
    63001 acgatacgct gacctgcggc aaaataacca ggaaaaatcc aggtatttcc tcacgtttta
    63061 agccagctcc cccttcacta aagggacaaa gcgcacggcc tccacggtat cgataataaa
    63121 ttcgcctccc cgacgacgca cccgtttcaa atactggtgc tcctccccta cgggtaagac
    63181 gagaatcccg ccttcgtcca gctgcgtcat tagcgcagtt ggaatttccg gcggtgccgc
    63241 cgtaacaatg atagcgtcaa acggcgcgcg tgcctgccaa ccttgccatc catcgccatg
    63301 acgggttgaa acattatgta aatcaagatt tttcaggcgg cgacgcgcct gccactgcaa
    63361 acctttaatc cgttcgaccg agcaaacatg ctggacaaga tgcgccagga ttgccgtttg
    63421 atatcccgaa ccggtgccaa tttccagcac ccgcgactgc ggcgtcagct cgagtaattc
    63481 ggtcattcgc gccaccatat acggctgcga aattgtctgc ccctgaccta tcggcaaggc
    63541 gatattgtcc caggcttttt gttcaaacgc ttcatcaacg aatttttcac gcggcacggc
    63601 agcaagtgca ttcagcacct gctcatcctg aataccttgc gcacgtaatt gatccagaag
    63661 tgcttgtacg cgtctgctta ccattgcgtg ccaactccca cgctgtttaa ccagtctgaa
    63721 accacatctt gcgcgctatg cgcagttaaa tccacatgca gcggcgtgat ggagacatag
    63781 ccctcatcta ccgcagcaaa atcggtcccc ggaccggcat cacatttacc gcccggcggg
    63841 ccaatccagt acagcgtatt gccgcgcgga tcttgctgcg ggatcacctg atctgccgga
    63901 tgtcgtgtac cgcagcgcgt cacgcgaata cctttgattt gatccaaggg taaatccgga
    63961 acgttaatat taagaatacg tccggtgcgc agcggctctt tacacagtgc gcgcaaaatt
    64021 gaacaggtta ccgccgcggc agtgtcgtaa tgtttatgcc cgtcaagcga gacggccagc
    64081 gccggaaaac ctaaatgacg gccttccatc gcggcggcta ccgtaccgga ataaataacg
    64141 tcatccccca gattcggccc ggcgttaatg ccggacacaa caatgtccgg gcgcggacgc
    64201 atcagagcat tcacgccaag atagacgcaa tcggtcgggg ttcccatttg cacagcaata
    64261 tcaccatttt caaaggtaaa cgtgcgcagg gaggattcca gtgtcagaga atttgaagcg
    64321 ccgctgcggt tacgatcggg ggcgaccacc tgaacgtcag caaactcacg caaggctttc
    64381 gccagcgttt gtataccggg tgcatgtacc ccgtcatcat tactcagcaa tatgcgcata
    64441 atcacctgtt gtgttgataa gttccctgac aacgctggtt gcaaaactac ccgccggaag
    64501 ccagaaacgg atctctacgg tgacgtcatc ccaccaattc cagcttaatt gttgcggata
    64561 cagcagcatc gctctgcgcg cggcttcaac tttttcgcgc accagtaaag cttgtaattc
    64621 agtttctgcg gcgacagctg cttgttcgaa tgccagcgct ttacgctgag ttccccattc
    64681 gccactgccc ggcaatgcgg cggttatcat cagctcttta tcgttgacgc gatgctgtaa
    64741 ttccgccagt tcttcggtgg ttgctacaaa ccagctacca cgtccggcta attgtagcgc
    64801 atcgccgtca acaacttgat taacgtctgc ttttttgagg cgctcagcaa caatctgatt
    64861 aaacaacgca ctgcgggctg ccgacaacca aaaactccgt ttattgcgat cgcgcaccgg
    64921 agtattggtt tgcgcccagc gcagcgcgcc ctgcaagttg ctaccgccaa tcccaaaacg
    64981 ttgggcaccg aagtagttcg gtacaccttt tacgcaaata tcgatcagac gttgttcaac
    65041 gtcatcgcga ttgctcactt cgcgcagaac cagggtaaag gcgttacctt tcagcgcgcc
    65101 taaacgcagc ttgcgcttgt gccgcgcata ctccagcacc tggcagcctt ccagttgaaa
    65161 ggcgctcaga tcgggcattt ccttgcctgg cacgcgagcg cataaccact gttccgtaac
    65221 agcatgtttg tctttttgcc cagcgaagct gacttcacgg gcatgaattt tcaggaattt
    65281 cgccagtgca tccgccacaa aacgggtatt gcagccgttt ttgaggattc taaccagaat
    65341 atgctcacct tcaccatcag gctcaaagcc caaatcttcc accaccacaa agtcttccgg
    65401 attggctttc agcagcccgg tgccttgcgg tttaccgtgg aggtaagtga gattatcaaa
    65461 ctcaatcatt ttgttgcctt aatgagtagc gccaccgctt cacaggcaat cccttcccca
    65521 cgtccggtaa atccaagttt ttccgtagta gtggctttca cgttaacatc atccatatgg
    65581 cagccgagat cttcggcaat aaacacgcgc atttgtggaa tgtgcggcaa catcttcggt
    65641 gcctgagcga tgatagtgac atcgacgttg cccagggtat aacccttcgc ctgaatacga
    65701 cgccaggctt cgcgtagcag ctcgcggctg tcggcacctt taaatgccgg atcggtatcc
    65761 gggaacagct tgccgatatc ccccagcgcc gccgcgccaa gcaatgcatc ggtcaacgca
    65821 tggagcgcca cgtcgccatc agaatgcgcc agcaatcctt tttcgtaagg aatgcgtacg
    65881 ccaccaatga taattgggcc ttcaccgcca aaggcatgta cgtcaaaacc gtgtccaatt
    65941 cgcattatgt attctcctga tggatggttc gggtgaggta aaactcggcc agtgccaaat
    66001 cttccgggcg cgtgacttta atgttatccg cacggccttc gaccaactga ggatggaatc
    66061 cgcaatattc cagcgccgag gcttcgtcgg taatagtcgc gccttcattt agagcgcgcg
    66121 tcagacagtc atgtaacagc tcacgaggga aaaattgcgg cgtcagcgcg tgccataagc
    66181 cgttgcgatc aacggtatga gcaatggcat ttttgcccgg ttcggcacgt ttcatcgtat
    66241 cgcgcactgg tgcggctagg atccctcccg tgcggctggt ttcgctcaac gccaacaatc
    66301 gcgcgaggtc atcctgatgc agacaaggac gagcggcgtc atgcaccaat acccactgcg
    66361 cgtcgccagc ggctttcaaa cctgccagca cggaatcggc acgctcatca ccgccatcta
    66421 caacggtgat ttgcggatga ttcgccagag gaagttgtgc aaaacggcta tcgccaggac
    66481 ttatggcaat gacgacacgt ttcacccggg gatgcgccag cagcgcatgc accgagtgtt
    66541 caagaatggt ttgattaccg attgagagat attgcttagg acattccgtt tgcattcgac
    66601 ggccaaatcc ggccgccgga accacggcgc aaacatccaa atgagtggtt gccatgttaa
    66661 ttcccgggct gatttatcga ttgttttgcc ccgcagactg tgcgcgcttc gacgcgtcag
    66721 gcaccagacg ataaaaagtt tcgcccggcc tggtcatgct gagttcatta cgcgcacgct
    66781 cttcgagcgc ctcctggccg ccattgagat cgtcaatttc ggcaaaaagt tgatcgtttc
    66841 gcgctttaag tttcgcgttt gtagcttgct gtgccgccac atcatcattg acgcgggtat
    66901 agtcatgtat accgttctta ccgaaccaca gcgaatactg tagccagacc agaatagcca
    66961 gcaacagcag cgttagttta cccatcctgc cccctgaaaa acggcatcat catcccatgc
    67021 atccgaagac gactctacat cctctgttgg ggataccgcg acaacgcggg caaatgtacc
    67081 acatttgtcc attgttacgt atacctaggg cgtgcagaac ataatctcat tattagttac
    67141 ggtttgaatt atgaacagag gagacaagaa agtacaaatt agcccagtag ccacataaac
    67201 agtgcgccaa acataatgcc tactgtcacc agggtgaaaa caatactgta gcgtagcttt
    67261 ccgtccatca atgaatgcag cgcaatcccc accactaccg cgacaggcat cagtgccaga
    67321 aagaaaggcc aggtgtagat aaagaagaac agcgtgttag agccataaat caacatcggc
    67381 atcgccagcg caaataacca ggagataaaa ccgaccacgg caccaggtag tgaccatgtg
    67441 gtttcttcat cctcagtaag gctgtcgtta tttgttagtg taatgttatg gctattacgc
    67501 atatttgatc ctgttacttt gacgaaccgg gcatggaaac ccggtggtgt ctcaggatct
    67561 gataatatcg ttctgtctca acagatctaa taattgctgt accaaatttg ttactaattg
    67621 ttcaccattg agatgaattt ctgccgattc aggcgcttcg taaacggaat ctattcccgt
    67681 aaagttgcgc agttcaccgg cacgcgcttt cttatataag cctttgggat cgcgggcttc
    67741 gcaaatcgcc agcggcgtat cgacaaacac ttcgataaag cgcccttctc ctacgcgttc
    67801 gcgaaccatc tggcgttcgg cgcggtgtgg cgagataaat gcggtcagca ccaccagtcc
    67861 ggcttcaacc atcaaattcg ccacttcacc gacgcgacgg atattctctt tacgatcggc
    67921 atcgctaaaa ccgagatcgc tgcataatcc gtggcgaaca ttgtcgccat ccagcagata
    67981 cgtactgacg ccgagtttat gtaacgcctc ctccagcgcc ccggcgaccg ttgatttacc
    68041 ggacccagag aggccggtaa accacagcac tacaccacga tgaccgtggt gtagctcgcg
    68101 ttgttgcaca gtgaccggat ggctatgcca gacgacgttt tcgtcatgca gcgccattat
    68161 ttatccccca gcaaatcgcg cgcgccccag tgcggaaagt ggcgacgaac cagggcattc
    68221 aattccagtt cgaatgcact gaattcagat gacgcaacgg cggcctcgtt tttcggctca
    68281 tgcaccatac cggcaccaac agtcacgttg ctcaggcgat cgataaaaat cagcccaccc
    68341 gtcaccggat tttgttgata acgatctaac accagcggct cgtcaaaagt gagatccacg
    68401 aggccgatcc cattcagtgg caggttttca acttcacgct gggtaaggtt attaatatca
    68461 accggatagc gaatgccatc aacacgcgcg cgcgtcttct taccggcaat tttgatgtcg
    68521 taactctggc ccggggaaag cggctgttcc gccatccata ccacatccac cgacgcgctc
    68581 ggcaccgccg gtaacgcttc gtctgccgcc agcagcagat cgccacggct gatgtcgatc
    68641 tcatccgtca gcaccagggt gatcgcttct ccggcaaagg cttcttcgcg atcaccatca
    68701 aaagtcacga tccgcgcgac gtttgattcc acaccagagg gcagcgcttt gacacgttgc
    68761 ccgacttcca cgcgaccgga tgccagcgtt ccggcgtagc cacgaaaatc gagattcggg
    68821 cgattaacgt actgcaccgg gaagcgcatt ggctgggcat ccaccactcg ctggatctcc
    68881 acggtttcca gcacttcgag cagtgtcgga ccgctgtacc acgacatact ttcactttgc
    68941 gatgccacgt tgtcgccttc cagtgcagag agcggcacaa agcggatatc cagattaccc
    69001 ggcagctgcc cggcaaaggt caaataatct tcacgaatat gggtgaacgt ctcttcactg
    69061 taatccacca gatccatttt gttgatcgcc acgaccagat gtttgatccc caacagtgtg
    69121 gagataaaac tgtgacgacg ggtttgatcg agcacgcctt tacgggcatc gatcagtaag
    69181 atcgccagtt cacatgtcga tgcgccagtt gccatattgc gagtgtactg ctcgtgccct
    69241 ggggtgtcgg cgataataaa tttacgcttc tcggtagaga aataacggta agccacgtca
    69301 atggtgatgc cctgttcgcg ctcagcttgc aggccgtcca ccagcagtgc cagatccagc
    69361 ttttcgccct gggtgccgtg acgcttactg tcgttatgca gcgatgagag ctgatcttcg
    69421 tagatttggc gggtatcatg cagcaggcga ccaatcaggg tacttttgcc gtcatcgacg
    69481 ctaccacagg tcagaaaacg cagcaggctt ttatgttgtt gcgcaatcat ccaggcttcg
    69541 acgccgcctt cattggcgat ttgttgtgca agtgcggtgt tcatcttaaa aatacccctg
    69601 acgttttttc agctccatag accccgcctg gtcgcggtca atcacgcggc cctgacgttc
    69661 actggtggta gaaaccagca tctcttcgat gatctccggc agtgtttgtg catttgactc
    69721 caccgcaccg gtcagcggcc agcagcccag cgtacggaaa cgcaccatcc gttttttaat
    69781 cacttcgccc ggttgcaggt cgatacggtt gtcatcaatc atcatcaaca taccgtcgcg
    69841 ttccagaacc ggacgttccg cagcgagata cagtggcaca atgtcgatat tttccagcca
    69901 gatgtattgc cagatatcct gctcggtcca gttagagagc gggaagacgc ggatgctttc
    69961 acctttgtta atttgcccgt tgtagttgtg ccacagctcc gggcgctgat ttttcggatc
    70021 ccagcgatgg aagcggtcac ggaaagagta gattcgctct ttagcgcggg atttctcttc
    70081 atcacggcgc gcaccaccga aggcggcatc aaaaccgtat ttgttcagcg cctgtttcag
    70141 gccttcagtt ttcataatat cggtatgttt cgcgctgccg tgtacgaatg gattaatccc
    70201 catcgccacg ccttccgggt ttttatgcac cagcagctcg cagccgtagg ctttagcagt
    70261 acgatcgcgg aactcataca tctcgcggaa tttccagccg gtatcgacat gcagcaacgg
    70321 gaaaggcagc gtacctggat aaaacgcctt gcgcgccaga tgcagcatga cgctggaatc
    70381 tttaccgata gagtagagca tcaccggatt tgagaattct gccgccacct cgcgaataat
    70441 gtggatgctt tccgcctcca gttgccgcag gtgagtaagt cgtttttgag ccataaccgt
    70501 tcctttgcaa taccgctatt ttcttgccat cagatgtttc gactataggg agcgtaagag
    70561 aacgaatgaa attaccaatt agaatgagta gttccttaac ggaataacga tttggcaaag
    70621 ctaatatcaa aaagtgctta aggcaccgga tttcgggcgt ttaggaagat ttgaaattgt
    70681 tttagcgcag cggcagtttc atactatggc ggtaaaaaaa tttgcatggt atttaaggac
    70741 tcactatgtt ttccgcattg cgccaccgta ccgctgccct ggcgctcggc gtatgcttta
    70801 ttctccccgt acacgcctcg tcacctaaac ctggcgattt tgctaatact caggcacgac
    70861 atattgctac tttctttccg ggacgcatga ccggaactcc tgcagaaatg ttatctgccg
    70921 attatattcg ccaacagttt cagcaaatgg gttatcgcag tgatattcgg acatttaata
    70981 gtcggtatat ttataccgcc cgcgataatc gtaagagctg gcataacgtg acgggaagta
    71041 cggtgattgc cgctcatgaa ggcaaagcgc cgcagcagat catcattatg gcgcatctgg
    71101 atacttacgc cccgctgagc gatgctgacg ccgatgccaa tctcggcggg ctgacgttac
    71161 aaggaatgga tgataacgcc gcaggtttag gtgtcatgct ggaattggca gaacgcctga
    71221 aaaatacgcc taccgagtat ggtattcgat ttgtggcgac cagcggcgaa gaggaaggga
    71281 aattaggcgc tgagaattta ctcaagcgga tgagtgacac cgaaaagaaa aatacgctgc
    71341 tggtgattaa tctcgataac ttaattgttg gcgataaatt gtatttcaac agcggtgtaa
    71401 aaacccctga agcagtaagg aaattaacgc gcgacagggc gctggcaatt gcgcgcagtc
    71461 acggaatagc cgcaacgacc aatccggggt tgaataaaaa ttatccgaaa ggcactgggt
    71521 gttgtaatga cgcagaaata ttcgacaaag cgggcattgc tgtactttcg gtggaagcga
    71581 ctaactggaa tcttgggaat aaggatggtt atcagcaacg cgcaaaaaca gccgcattcc
    71641 ctgcgggaaa tagctggcat gacgtaagac tggataatca acagcatatt gataaggcac
    71701 ttcctggaag aatagaacgt cgctgccgtg acgttatgcg gataatgcta ccgttggtga
    71761 aggagctggc gaaggcgtct tgatgggttt gaaaatggga gctgggagtt ctaccgcagg
    71821 ggcggggaat tctaagtgat atccattatc gcatccagtg cgcccggttt atccccgctg
    71881 gcgcggggaa cacactaagc atacataact gtttttaaac aaatttattc cgcatcaaca
    71941 atctaccaac taaattaaaa catttcctta tttttaaaga acggataact tattgattat
    72001 caacaggaag aaaagaaacc aaacgtaacc catccaaatc caccggaata cgtctgtttt
    72061 ctccccaggt ctgaaattca aaacccgact cggtattggt cgcccaggcc atcaccacat
    72121 ttccgcaacc agccagttgg gtaatttgct gccagatcat ctcccgaata cgttttgatg
    72181 tatcaccaac atacacaccg gcacgcactt ccagtagcca gattgcgagc cgtccacgta
    72241 agcgtggcgg gacattttct gtaacaacca cgaccatgct catcagccgc gtcctcgatg
    72301 accgctatcg cccaacgttt caggttcggg gatggctggc ggtaacatat ccggcgcagg
    72361 ttgtggcggt tcaatttcac ctgcggcaag gacttcctca attaacggta ttaatttgcc
    72421 cgttaactta gtgctacgga aaatatcacg acaggctaat ctgacttctt tatcaggttc
    72481 tgcgggttgc ctcgccgcta tttcaaatgc ctttggtaca accgaatcaa atttaatgat
    72541 atcggctatg tcataaacaa atgaaagcgg tttgccacta tggataaacc caatagcggg
    72601 cgcatatccc gcggctaata ctgccgcttc agatataccg tacagacatg atgtagcagc
    72661 actgatgcag cgattcacaa catcgccttt ttcccagtct ttaggatcgt atttgcgacc
    72721 attccatttc acaccatatt gtttcgccag taatgcatac gtctggcgaa cgcgagatcc
    72781 ctcaattcca cgtagctgct ccactgaacg gcgagctggc ggtggctcac gaaaacgtaa
    72841 ttcatacatt ttgcgcacca ccttcagacg tagatcttcc gttaaagcca gctttgcctg
    72901 gtagagtaac ttatcagcac gcgccccacc gggttgtccg gaagagtaga cgcgaacacc
    72961 cgcttcaccg acccagacct gtagcgtccc caccgtggcg gccagatgca ccgccgcgtg
    73021 ggaaactctc gttcccggtt cgagcataat gcaggcgacc gatcccaccg gaatgtgcgt
    73081 gcggatcccg gttttatcga tcagcacgaa agcgccgtcc agtacgtcga tttgcccgta
    73141 ctggaggaag atcatagagg tgcgatcttt taacgggatc gggctcagcg gtacaaacgt
    73201 cacgcctctg ctccgggttt gatcagcatc agaccacagc cgaacgcgcg gcttttgcca
    73261 tacccctgac tgagacgttg cagaaataac ccgggatcgg tgaccgtaag catccccgta
    73321 taatccacgc tactgaactg gatcagttgc cgggagtttt cccgccgcag ttgctgttgt
    73381 cggtaggcat caaccgagat atccagcagt gtaaaaccac ttctctcccc ctgcgctgcc
    73441 agccagtcca gcgccgcctg ttgttgatgc aaccagacat cacttccttc cgcctgcccc
    73501 ctcacctgcc gtttcgcctc catcagcaga tcgtggcgct tgcccgcttt acagattgtt
    73561 ggattcgccc gcaggttgaa acaaagttgt tgtccggtac acagctcggg cgcaaatgac
    73621 cggcattcta tggtgaacgt atcactttcc gccgggcgtt cctgcgacag tacaaaaaag
    73681 cgaaacgcgc cctggagttc ttcccgacga taaagaaatt gcctttcttt gccgctaggg
    73741 aagagatccc acagccactg atgcatcaca tattcaccgc gatccaccag atgcagcaac
    73801 tgcgcaggcg aaagctggcc ggtatgtaag gttattcttg agaggtacat ggttcctcct
    73861 tgctgagcca cggcccctga ttgacggtgc gttccccaaa cagccactgc tgacgattta
    73921 aaggaacatc ccggcggcgt aatattttgc tcgcgaccag gccgtcgtgt ttcccttccc
    73981 accagcattc atcctgaagt ttcgggagtg aaactttcag tttatggaaa tgatcctgat
    74041 actgttggta tgcattacat aaggcatcac acgcgttgcc ttcgagcagt aacggcgcaa
    74101 gaggtaatgc cagcggatga ctttttcgcc ccagataaag cggaaaaact ggatggcgta
    74161 aaccgtcctg caactgttcg aggctgtaag gcgcatcggc tgttgttgcc accgccacca
    74221 tccaccaggc atcggtgtag tagtcgcgcc gggagataat cgcgctcaaa agctcagggt
    74281 cgctcaactc ttcgcgacgg ctgaaataac gtgctttacg cacctctttt ggcatctgga
    74341 ccgtgtgata atcccgtgcc cagcgcgggt tacggctggc gcaaaccacc agtgaatagt
    74401 ggcgattaaa cgcgtttaag cgttcggtat catcacgccg gatccctacc ccggcagcca
    74461 gcagccccag caatgctgag agcgaaggca gttcatgggt atgacgcact tcgccggggg
    74521 catcgacgcc ccaggatgcc atcggcccat gaagctgaaa aatcagatat tggctcataa
    74581 gccgcccctt acgcgcagat aaagtccagc acgtccttca tgcttccctg tttgttcatc
    74641 acgtcaaaac ttgcgtaatc ggtcttctgt tcgtagaccg tattcatatt ttcgcgaaga
    74701 gttgtaatac gctgcaccgc cacctctaac tgacgggtgc cattaatggg ttcatagaaa
    74761 gctgccgcca gagaacgcgg ttgatcggtg cctttttctg ccagcgccca ggaggcataa
    74821 gcccggctgg caaagctgtt ttgtttaccg gttggggaga ctttaagcgc ggcttccgta
    74881 aaggcgcgta tggtctgatt agctaacgct tcgtcaccgc cgaggttttc taccagcaga
    74941 tctttatcaa tgcagataag atataggtgt agaacagcgc agaaccgaat ccggtttcat
    75001 ctacatgacc ggcaccggca tcttcagaag cctggcgtaa atcatctacg gcggtgaaaa
    75061 aatcattttc gacaatcgtt tcactgacac caaacgcatg cgcgacctgg caggcggctt
    75121 ctacattaaa cccgggtttt ttcgccagca tacgaccaaa catagcgata tctaccgcca
    75181 tacggtcttt acgtaacaaa gcgagatctt tctcttttgg cgcgcgcttt tcttctgcca
    75241 gttgatgggc cagcgctttt acggcgtcaa attctgccgg gctgatatgg acgagctgtt
    75301 cagtttcggc gctagtgagc ggatcttttg gttttttgtc gtttttttgt tttttgtctt
    75361 ttttggcttt cccaagataa tcggctatct ctactgccca ttcgatggct tttttatctt
    75421 cgattccttt ctcaatcagg atagttgccg cctcacgcgc aatacgcccg ctacgaacac
    75481 caatatggcc cgccagcgcc tgttcaaaaa gttcagaagt gcgccaagca cgcttcagac
    75541 tttgcgagga aacgcgcaga cgcgttgctc cacccagaat cacagttttc ggagagccgg
    75601 aatcatcacg gttaagattg gcagcagggt aagcggttaa caaatgaagc tgaataaatg
    75661 ttgtcatgag atagtccttt attaattttg ttcgttatcg gcgtcgccag cctggtaata
    75721 ttccagcgcc cagcgcccag cgcccagcgc ccagcgccca gcgcccagcg gatacggata
    75781 aattctgttg gtcgctgctg gcggcggtga tgattgagca ggtcatcgct ctcctggcac
    75841 cagcggaaga ccccctcttc tagagagtca agattgacgg aaccgtttaa taatttgacc
    75901 gcacggcgta actgccgcaa taaatcatcc ggcgttttta ctgccaacaa acgagtaaac
    75961 cgcccctttt tcattaccgc cgccagttgc gcggcaaaag gctgccgttc gtcaatagct
    76021 ttaacattgg cgctaactgc tgctatcagc gctagtgcgg tgatacgcca ctcgggttca
    76081 tcctgccact ttatttgtct gttcttaaga aacaggcgaa atccatccgt cagacaaaca
    76141 tcattaaccg tcgtactacg ccgcagactg gcacgctcgc cgcgtttatc ctgcaactct
    76201 tcatgccatt tacgcagcgc aactttatgc tcatctttta caatactcat tcagcagcct
    76261 cctgcttttt ctccctggcg gcgttagcat tttgcttctc cgctgatgtt gtaaaatatt
    76321 tcttgcgtgc ggtcatgacg cgttccaaat caacgggctc atatggattg gtaaagacac
    76381 gatcgtcaaa atcctgacgc gcgaataacc acatttcctt ttgccattta ctgagtaatt
    76441 cgtccggatc ctgaccttct tcaattttgc gcactaatct caggaatcga tgctgagttt
    76501 tgttccagaa gtcaatatcc acaaaaccga aatcaagctt tgtggttttc ttctcagaga
    76561 accatgcttc tttcaacgct cggtgtaaca agcttagaat gtgtgatgcc gcttgcgctg
    76621 ccagacgcaa cttaggtatt aggtcttctt ttttgtttaa caacagcggg aaatggtgtt
    76681 cataccaaca acgaaccttc atatcttcaa aatcaaaacc aaatccccat aagcccaccc
    76741 ttgtctgctt tagattgctg gcattcaaaa gtttcacgac ctgtgcgggg agttcagtat
    76801 tgttttttga gttacctacc tctatgaggc ctaaccagtc gcgccagatt aaaccaccag
    76861 gttgtggttt aactgagtaa aaatctccac cctctttaag cggcagacgg taaggtgtta
    76921 gaggatggcg ccacatgacg tattgaacac catagttttt gagtgacatc aagcccaaaa
    76981 gagcatcgct ctgcctaccg caaatgtcgc agttacctat tgaggttgtc ttaaaatcaa
    77041 tacgtatacg tcgtggcatt ccccagtagg cctgaagttt attgacttgt tcatccgtta
    77101 ccacagcacc gtccagttcg ctggtacgcg tcggtgcaag ccaaggaaag accaggtcat
    77161 caaaggtttt tggtaaaggt aaatcggctt catcttgcgg cattacgttt agccacagct
    77221 ttcgccacaa aggggtttgt tgattgccct gatactccag caattctata agtgtcgtca
    77281 gaggccctcc gccacgtagc ccaggatagt aaccgcgtcc acctataggt gcattcaact
    77341 ggattgaaaa aagcgctaaa ggcacacaat gcaggcacag atgctgagtt gtgtctcgct
    77401 taataaaatg gtctgtattt cgttcttttg tttgttttcc tggtgcgtca ggaagaagcg
    77461 aagcaataaa agttgcctta acttttaatt catcaaaatc ctgcataaat gaaggggaat
    77521 ctggcccaaa ctgaaaagca tgttctaaag acagcaatgc ttcccttagc ttttcagctt
    77581 ccagtccgtc ttcccagata tcatcccaac tacgttgatc ttttggcgcg aagctggttt
    77641 gtagtagccc cagcaaaaac tgccaggccg ccccctggag atctgcccgc ggcgcagcga
    77701 tatcgacaac attttcatca gccagatcga ctggtgccag tttgcctgtc gttccgtctt
    77761 taaaacgaac gggcaaccac ggggttgtca gaagtgaaaa cgagttcata cgcatcctct
    77821 cgtaaaaaag accatcccag gtcggttgtc catccttcca tccttttctg tatatcaact
    77881 attcagagag tcttgtcgca gacatctcaa ccaaccttgc caatcaatcc ctccctggcc
    77941 gaatacccgc aactttcgtc atcggtgact aaaatcacgt ttgccatttc cggatcttgc
    78001 cgctgttcaa cgcaccactg cctgaacgca tccccttcca gtaaagaaaa ctcatcccga
    78061 tgttttttcc accagcttcg gcgcactctg acaacgctca tttcccatgc gtgagcaccg
    78121 gtggcataag gcttcaccac accgtcaata caggtagcca gccacaggga aacagactct
    78181 tcagccagac gtgtcgacag tttttccgga aggtaatcgt tgatattggc ggcatagccg
    78241 agcctgaagt tcagcacata ctttttagcc cttgcgcgat cacagtaata tttgcccact
    78301 tgctcctgct cgctgcgggc aaatccttcc ggcattacca cgtcctcacc gtaaactgat
    78361 tcaataagaa gccgggctgc gtgcggcatc tgaatagcgc cttgctcacg cagcacacgc
    78421 tgcgtcagcc agattcgccc atgatcggga tagacatatg cactgttacg catggcactg
    78481 ccgaaccatt cgtcaccagg agcgtcatcc cagacggggg ccagaatcag caattcaggg
    78541 ggggaacgct cgtcttttcc gtcacgcttt aactgaccat taatatcgcg gatatgccgc
    78601 tgtaatcgcc ccgctcgctg gattagcaaa tcaatggggg ccaggtcgga gatcatttcg
    78661 tccaggtcaa tatccacgct ttgttcaatt acttgtgtac aaacaatgac ttgagacgct
    78721 ctctgtaaac tacaatattt accaaagcgt gccagcgttt ccgtttcaat tcgctggcga
    78781 tcgctaaaag caaagcggct atgaaaaagt gaaaggctgg aagcaggaat gacgccgcgg
    78841 gcaagcagct gacgatacac ctgaatagcg tcatcaacag aattccgaat ccaggcgatg
    78901 catttcccct gacttaccgc cgattcgata cgcgcaatac actcttgttc actatggagc
    78961 caacccacgc tcacgctacg ttcaacttct ttgcgcgtcg ctacccggtg cgaatgtaca
    79021 tcggttttcg tgacatgcgt cagccagggg taatcatctt ttcccaggag tggggcttct
    79081 tgctggccct ctgcaccacg cgcaaaggcg gcgacgagtt tgtcgcgctg ctgttgagat
    79141 aacgtagcag aaagcaaaat aacgctgttt ccgccacgcg cctgccgctc gatcagccct
    79201 tcaagaatgc acgacatata agcgtcacag gcgtggatct catcagccag caggattttg
    79261 ttactcagcc ccagaagccg cagattatta tgtttaaacg gcatcactgc catcatcgcc
    79321 tgatccaggg tgccgacgcc aatttcagcc agcaacgcct tcttgttact gtcggcaaac
    79381 taggccgcac aaccctggct gaaagcttgt tcatccggtt cttctgaccc gattaaatca
    79441 ccggaccaga gtgattcatt a
//
LOCUS       DAJVSY010000003        75810 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.003, whole genome shotgun sequence.
ACCESSION   DAJVSY010000003 DAJVSY010000000
VERSION     DAJVSY010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 75810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 75810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..75810
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.003"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            138..761
                     /gene="iprA"
                     /locus_tag="OQQ19_000178"
     CDS             138..761
                     /gene="iprA"
                     /locus_tag="OQQ19_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414909.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogen peroxide resistance inhibitor IprA"
                     /protein_id="HCS1801941.1"
                     /translation="MLSVVKPLQEFGKLDKCLSRYGTRFEFNNEKQVIFSSDVNSEDT
                     FFILEGVISLRREENVLIGITQASYIMGLADGLMKNDIPYKLISEGNCTGYHLPAKQT
                     ITLIEQNQLWRDAFYWLAWQNRILELRDVQLIGHNSYEQIRATLLSMIDWNEELRSRI
                     GVMNYIHQRTRISRSVVAEVLAALRKGGYIEMNKGKLVAINCLPSEY"
     gene            complement(762..1919)
                     /gene="ampH"
                     /locus_tag="OQQ19_000179"
     CDS             complement(762..1919)
                     /gene="ampH"
                     /locus_tag="OQQ19_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine-
                     carboxypeptidase/endopeptidase AmpH"
                     /protein_id="HCS1801942.1"
                     /translation="MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFY
                     GSGATGMALVVIDGNQRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLD
                     QGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPT
                     REQRWKYLSTAKLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEQITRPLGMK
                     DTTYTPSPDQCRRLMVAERGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQR
                     SNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVYMAPKEGRPGIIQKTGGGGGF
                     ITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGINDLVTELSGNKPLVIPAS"
     gene            2271..3491
                     /gene="sbmA"
                     /locus_tag="OQQ19_000180"
     CDS             2271..3491
                     /gene="sbmA"
                     /locus_tag="OQQ19_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706191.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide antibiotic transporter SbmA"
                     /protein_id="HCS1801943.1"
                     /translation="MFKSFFPKPGAFFLSAFVWALIAVIFWQAGGGDWVARITGASGQ
                     IPISAARFWSLDFLIFYAYYIVCVGLFAFFWFIYSPHRWQYWSILGTALIIFVTWFLV
                     EVGVAVNAWYAPFYDLIQTALSSPHKVTIEQFYREVGVFLGIALIAVVISVLNNFFVS
                     HYVFRWRTAMNEYYMANWQQLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLVA
                     FLPVLVTLSAHVPELPIIGHIPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVE
                     AAYRKELVYGEDDATRATPPTVRELFSAVRKNYFRLYFHYMYFNIARILYLQVDNVFG
                     LFLLFPSIVAGTITLGLMTQITNVFGQVRGAFQYLINSWTTLVELMSIYKRLRSFEHE
                     LDGDKIQEVTHTLS"
     gene            3504..4598
                     /gene="yaiW"
                     /locus_tag="OQQ19_000181"
     CDS             3504..4598
                     /gene="yaiW"
                     /locus_tag="OQQ19_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-exposed outer membrane lipoprotein YaiW"
                     /protein_id="HCS1801944.1"
                     /translation="MSRVNHLSSLSLLAVLVLAGCSSQAPQPLKKGEKAIDVASVVRQ
                     KMPASVKDRDAWAKDLATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIA
                     WQEIDRRAERMHIPAFLVHTALKIKSPNGKSYSERLDSVRTEKQLSAIFDDLISMVPM
                     GQTLFGSLNPVRTGGPMQVSIAFAEQHTKGYPWKMDGTVRQEVFSRRGGLWFGTYHLL
                     NYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYDSKEPGKTE
                     LATRKLAGKLGMSDSEIRRQLEKGDSFSFEETALYKKVYQLAEAKTGKSLPREMLPGI
                     QLESPKITRNLTTAWFAKRVDERRARCMKQ"
     gene            complement(4657..4965)
                     /locus_tag="OQQ19_000182"
     CDS             complement(4657..4965)
                     /locus_tag="OQQ19_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiY family protein"
                     /protein_id="HCS1801945.1"
                     /translation="MADFTLSKSLFSGKYRNASSTPGNIAYALFVLFCFWAGAQLLNL
                     LVHAPGVYERLMQVQETGRPRVEIGLGVGTIFGLIPFLVGCLIFAVVALWLHWRHRRQ
                     "
     gene            5225..5437
                     /locus_tag="OQQ19_000183"
     CDS             5225..5437
                     /locus_tag="OQQ19_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414914.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2754 domain-containing protein"
                     /protein_id="HCS1801946.1"
                     /translation="MNLPVKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKGWQTYAVG
                     LVTWVISFWLAGLIIRRRDEETENAQ"
     gene            complement(5461..6555)
                     /gene="ddlA"
                     /locus_tag="OQQ19_000184"
     CDS             complement(5461..6555)
                     /gene="ddlA"
                     /locus_tag="OQQ19_000184"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HCS1801947.1"
                     /translation="MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGID
                     KQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVI
                     FPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT
                     LTRANRHNISFAEVESKLRLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKV
                     IVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAP
                     EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQA
                     SGLGYTDLITRLIELALERHAADNALKTTM"
     gene            6633..6790
                     /locus_tag="OQQ19_000185"
                     /pseudo
     CDS             6633..6790
                     /locus_tag="OQQ19_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439229.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            7017..7277
                     /gene="iraP"
                     /locus_tag="OQQ19_000186"
     CDS             7017..7277
                     /gene="iraP"
                     /locus_tag="OQQ19_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraP"
                     /protein_id="HCS1801948.1"
                     /translation="MKNLIAELLLKLAQKEEESKELCAQVEALEIIVTAMLRNMAQND
                     QQRLIEQVEGALYEVKPDASIPDDDTELLRNYVKKLLKHPRQ"
     gene            7378..8793
                     /gene="phoA"
                     /locus_tag="OQQ19_000187"
     CDS             7378..8793
                     /gene="phoA"
                     /locus_tag="OQQ19_000187"
                     /EC_number="3.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414917.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase"
                     /protein_id="HCS1801949.1"
                     /translation="MKQSTIALALLPLLFTPVTKARTPEMPVLENRAAQGDITAPGGA
                     RRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPL
                     TGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKA
                     AGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLL
                     NARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNAVTEANQQKP
                     LLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTLNPQRNDSVPTLAQMTDKAIELLSK
                     NEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKDGNTLVIVTADH
                     AHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAAN
                     VVGLTDQTDLFYTMKAALGLK"
     gene            8912..9232
                     /gene="psiF"
                     /locus_tag="OQQ19_000188"
     CDS             8912..9232
                     /gene="psiF"
                     /locus_tag="OQQ19_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate starvation-inducible protein PsiF"
                     /protein_id="HCS1801950.1"
                     /translation="MKITLLVTLLFGLVFLTTVGAAERTLTPQQQRMTSCNQQATAQA
                     LKGDARKTYMSDCLKNSKSAPGEKSLTPQQQKMRECNNQATQQSLKGDDRNKFMSACL
                     KKAA"
     gene            9334..10449
                     /gene="adrA"
                     /locus_tag="OQQ19_000189"
                     /gene_synonym="dgcC"
     CDS             9334..10449
                     /gene="adrA"
                     /locus_tag="OQQ19_000189"
                     /gene_synonym="dgcC"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase AdrA"
                     /protein_id="HCS1801951.1"
                     /translation="MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLP
                     RAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNL
                     KTDAVLAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLEL
                     TGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGV
                     YNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQ
                     ITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRLPNTPQVTLRISVG
                     VAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA"
     gene            complement(10466..11275)
                     /gene="proC"
                     /locus_tag="OQQ19_000190"
     CDS             complement(10466..11275)
                     /gene="proC"
                     /locus_tag="OQQ19_000190"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HCS1801952.1"
                     /translation="MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPNKVAA
                     LHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTL
                     DQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVI
                     AEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLET
                     GEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS"
     gene            11395..11853
                     /locus_tag="OQQ19_000191"
     CDS             11395..11853
                     /locus_tag="OQQ19_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414921.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiI/YqxD family protein"
                     /protein_id="HCS1801953.1"
                     /translation="MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRF
                     IRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATI
                     RERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG"
     gene            12036..12560
                     /gene="aroL"
                     /locus_tag="OQQ19_000192"
     CDS             12036..12560
                     /gene="aroL"
                     /locus_tag="OQQ19_000192"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroL"
                     /protein_id="HCS1801954.1"
                     /translation="MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMT
                     VAEIVEREEWAGFRARETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVVYLCA
                     PVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQV
                     ISEIRSALAQTINC"
     gene            12610..12801
                     /gene="yaiA"
                     /locus_tag="OQQ19_000193"
     CDS             12610..12801
                     /gene="yaiA"
                     /locus_tag="OQQ19_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YaiA"
                     /protein_id="HCS1801955.1"
                     /translation="MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEH
                     PTAQEAMDAKKRYEDPDKE"
     gene            13059..13736
                     /locus_tag="OQQ19_000194"
     CDS             13059..13736
                     /locus_tag="OQQ19_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AroM family protein"
                     /protein_id="HCS1801956.1"
                     /translation="MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREE
                     VMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANI
                     SSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSL
                     GNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIAR
                     LAAELLV"
     gene            13808..14092
                     /gene="ppnP"
                     /locus_tag="OQQ19_000195"
     CDS             13808..14092
                     /gene="ppnP"
                     /locus_tag="OQQ19_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine/purine nucleoside phosphorylase"
                     /protein_id="HCS1801957.1"
                     /translation="MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEE
                     MTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL"
     gene            14240..14581
                     /locus_tag="OQQ19_000196"
                     /pseudo
     CDS             14240..14581
                     /locus_tag="OQQ19_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308469.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2773 domain-containing protein"
     gene            14578..14661
                     /locus_tag="OQQ19_000197"
     CDS             14578..14661
                     /locus_tag="OQQ19_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1801958.1"
                     /translation="MTQRPWSKLQHKTHNIAALKIIVRRSE"
     gene            complement(14739..15650)
                     /gene="rdgC"
                     /locus_tag="OQQ19_000198"
     CDS             complement(14739..15650)
                     /gene="rdgC"
                     /locus_tag="OQQ19_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HCS1801959.1"
                     /translation="MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMG
                     WVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKT
                     EKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGS
                     LPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEE
                     ITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFD
                     ADFILMTGELAALIQNLIEGLGGEAQR"
     gene            15775..16682
                     /gene="mak"
                     /locus_tag="OQQ19_000199"
                     /pseudo
     CDS             15775..16682
                     /gene="mak"
                     /locus_tag="OQQ19_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414928.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fructokinase"
     gene            complement(16825..18009)
                     /gene="araJ"
                     /locus_tag="OQQ19_000200"
     CDS             complement(16825..18009)
                     /gene="araJ"
                     /locus_tag="OQQ19_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414930.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter AraJ"
                     /protein_id="HCS1801960.1"
                     /translation="MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMI
                     SYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSG
                     FPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTF
                     LLIAVFNIAVMASVYFWVPDIRDEAKGKLREQFHFLRSPAPWLIFAATMFGNAGVFAW
                     FSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIV
                     LALLMFFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFN
                     LGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKP
                     LG"
     gene            complement(18135..21278)
                     /gene="sbcC"
                     /locus_tag="OQQ19_000201"
     CDS             complement(18135..21278)
                     /gene="sbcC"
                     /locus_tag="OQQ19_000201"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308474.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease subunit SbcC"
                     /protein_id="HCS1801961.1"
                     /translation="MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKT
                     TLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRAR
                     NQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAA
                     FLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQV
                     QSLTASLQVLTDEEKQLLTAQQQEQQSLNWLTRLDELQQEASRRQQALQQALAEEEKA
                     QPQLAALSLAQPARNLRPHWERIAEHSAALAHTRQQIEEVNTRLQSTMALRASIRHHA
                     AKQSAELQQQQQSLNTWLQEHDRFRQWNNELAGWRAQFSQQTSDREHLRQWQQQLTHA
                     EQKLNALAAITLTLTADEVATALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLMVTIQ
                     NGSLEQTQRNVALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPL
                     CGSTSHPAVKAYQALEPGVNQSRLLALENEVKKLGEEGAALRGQLDALTKQLQRDENE
                     AQSLRQDEQALTQQWQAVTASLNITLQPQDDIQPWLDAQDEHKRQLRLLSQRHELQGQ
                     IAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEESWLATRQQEAQSWQQRQN
                     ELTTLQNRIQQLTPILETLPQSDDLPHSEETVALDNWRQVHEQCLALHSQQQTLQQQD
                     VLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQT
                     LVTQTAETLAQHQQHRPDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDA
                     DNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQL
                     TRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSH
                     KTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVK
                     KINGLGYSKLESTFAVK"
     gene            complement(21275..22477)
                     /gene="sbcD"
                     /locus_tag="OQQ19_000202"
     CDS             complement(21275..22477)
                     /gene="sbcD"
                     /locus_tag="OQQ19_000202"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease subunit SbcD"
                     /protein_id="HCS1801962.1"
                     /translation="MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAII
                     VAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNT
                     TVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIISSQAGLNGIEKQQHLLAAITDY
                     YQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYI
                     ALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVT
                     QPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALAESLPVE
                     VLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLH
                     TLAGEHEA"
     gene            22667..23356
                     /gene="phoB"
                     /locus_tag="OQQ19_000203"
     CDS             22667..23356
                     /gene="phoB"
                     /locus_tag="OQQ19_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000113934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate response regulator transcription
                     factor PhoB"
                     /protein_id="HCS1801963.1"
                     /translation="MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE
                     PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDY
                     ITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEF
                     KLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTV
                     RGTGYRFSTRF"
     gene            23414..24709
                     /gene="phoR"
                     /locus_tag="OQQ19_000204"
     CDS             23414..24709
                     /gene="phoR"
                     /locus_tag="OQQ19_000204"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor histidine kinase PhoR"
                     /protein_id="HCS1801964.1"
                     /translation="MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLI
                     WHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRS
                     GAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRD
                     FSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTP
                     LTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNE
                     KVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTP
                     EGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLA
                     IVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD"
     gene            25116..26435
                     /gene="brnQ"
                     /locus_tag="OQQ19_000205"
     CDS             25116..26435
                     /gene="brnQ"
                     /locus_tag="OQQ19_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transporter carrier
                     protein BrnQ"
                     /protein_id="HCS1801965.1"
                     /translation="MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTA
                     AFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRT
                     ATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALV
                     ILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGV
                     TEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFG
                     GGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLS
                     QLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAF
                     SDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH"
     gene            26511..27884
                     /gene="proY"
                     /locus_tag="OQQ19_000206"
     CDS             26511..27884
                     /gene="proY"
                     /locus_tag="OQQ19_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline-specific permease ProY"
                     /protein_id="HCS1801966.1"
                     /translation="MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSV
                     LLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIV
                     AIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATI
                     IIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEII
                     GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQH
                     MGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVT
                     VLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVK
                     ALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHD
                     RQLAENQ"
     gene            28040..29762
                     /gene="malZ"
                     /locus_tag="OQQ19_000207"
                     /pseudo
     CDS             28040..29762
                     /gene="malZ"
                     /locus_tag="OQQ19_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706291.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin glucosidase"
     gene            complement(29767..30348)
                     /gene="acpH"
                     /locus_tag="OQQ19_000208"
     CDS             complement(29767..30348)
                     /gene="acpH"
                     /locus_tag="OQQ19_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP phosphodiesterase"
                     /protein_id="HCS1801967.1"
                     /translation="MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHM
                     HRRIDVLTDNLPEVREAREWFRRETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFI
                     CYARKQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALR
                     DSWYDLNAHYTALGTRFWQFYPRMMAQASHKAL"
     gene            30441..31511
                     /gene="queA"
                     /locus_tag="OQQ19_000209"
     CDS             30441..31511
                     /gene="queA"
                     /locus_tag="OQQ19_000209"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HCS1801968.1"
                     /translation="MRVTDFFFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFT
                     DLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPK
                     PGAELLLGDDESINATMTARHGALFEVEFNDDRSVLDILNSIGHMPLPPYIDRPDEDA
                     DRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVD
                     TIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPF
                     FDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRF
                     FSYGDAMFITYNPQAINERVGE"
     gene            31567..32694
                     /gene="tgt"
                     /locus_tag="OQQ19_000210"
     CDS             31567..32694
                     /gene="tgt"
                     /locus_tag="OQQ19_000210"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HCS1801969.1"
                     /translation="MKFELDTTDGRARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPE
                     EVEATGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIR
                     KITEQGVHFRNPINGDPIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSME
                     MSLRWAKRSRERFDSLGNKNALFGIIQGSVYEDLRDISVKGLVDIGFDGYAVGGLAVG
                     EPKADMHRILEHVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGH
                     LFVTDGVVKIRNAKYKSDTGPLDPECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHN
                     LRYYQRLMAGLRKAIEEGKLESFVTDFYQRQGREVPPLNVD"
     gene            32717..33049
                     /gene="yajC"
                     /locus_tag="OQQ19_000211"
     CDS             32717..33049
                     /gene="yajC"
                     /locus_tag="OQQ19_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000007628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HCS1801970.1"
                     /translation="MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQK
                     RTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAENGYIAIALNDTTEVVIKRDFVAAVL
                     PKGTMKAL"
     gene            33077..34924
                     /gene="secD"
                     /locus_tag="OQQ19_000212"
     CDS             33077..34924
                     /gene="secD"
                     /locus_tag="OQQ19_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HCS1801971.1"
                     /translation="MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVA
                     ASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREALMGVMGDKYVVA
                     LNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLRE
                     KGIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDAR
                     LSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGAT
                     ATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQD
                     EYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEV
                     INIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNI
                     EQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIA
                     GIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVII
                     LYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI"
     gene            34935..35906
                     /gene="secF"
                     /locus_tag="OQQ19_000213"
     CDS             34935..35906
                     /gene="secF"
                     /locus_tag="OQQ19_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HCS1801972.1"
                     /translation="MAQEYTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVR
                     GFNWGLDFTGGTVIEITLEKPAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAE
                     GETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVGADLTQTGAMALMAALLSILVY
                     VGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVS
                     DRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPVLEGFSLT
                     MLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSILP"
     gene            36035..36382
                     /locus_tag="OQQ19_000214"
     CDS             36035..36382
                     /locus_tag="OQQ19_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH nuclease family protein"
                     /protein_id="HCS1801973.1"
                     /translation="MAIIPKNYARLESGYREKALKIYPWVCGRCSREFVYSNLRELTV
                     HHIDHDHTNNPEDGSNWELLCLYCHDHEHSKYTEADQYGTTVIAGEDAQKDVGEAKYN
                     PFADLKAMMNKKK"
     gene            complement(36559..37443)
                     /gene="tsx"
                     /locus_tag="OQQ19_000215"
     CDS             complement(36559..37443)
                     /gene="tsx"
                     /locus_tag="OQQ19_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-specific channel-forming protein Tsx"
                     /protein_id="HCS1801974.1"
                     /translation="MKKTLLAAGAVLALSSSFTVNAAENDKPQYLSDWWHQSVNVVGS
                     YHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYADAPVFFGGNSDAKGIWNHGSPLFMEI
                     EPRFSIDKLTNTDLNFGPFKEWYFANNYIYDMGRNKNGRQSTWYMGLGTDIDTGLPMS
                     LSMNVYAKYQWQNYGAANENEWDGYRFKIKYFVPITDLWGGQLSYIGFTNFDWGSDLG
                     DDSGNAINGIKTRTNNSIASSHILALNYDHWHYSVVARYWHDGGQWNDDAELNFGNGN
                     FNVRSTGWGGYLVVGYNF"
     gene            complement(37742..38281)
                     /locus_tag="OQQ19_000216"
     CDS             complement(37742..38281)
                     /locus_tag="OQQ19_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3251 domain-containing protein"
                     /protein_id="HCS1801975.1"
                     /translation="MNTNVFRLLLLGSLFSLSACVQQSEVRQMKHSVSTLNQEMTQLN
                     QETVKITQQNRLNAKSSSGGYLLPGAKTPARLESQIGTLRMSLVNITPDTDGTTLTLR
                     IQGESNDPLPAFSGTVEYGQIQGTIDNFQEINVQNQLINAPASVLAPSDVDIPLQLKG
                     ISVDQLGFVRIHDIQPVMQ"
     gene            38432..38881
                     /gene="nrdR"
                     /locus_tag="OQQ19_000217"
     CDS             38432..38881
                     /gene="nrdR"
                     /locus_tag="OQQ19_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HCS1801976.1"
                     /translation="MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVA
                     ELVMPRVVKSNDVREPFNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGERE
                     VPSKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKEFGEEIARLED"
     gene            38885..39988
                     /gene="ribD"
                     /locus_tag="OQQ19_000218"
     CDS             38885..39988
                     /gene="ribD"
                     /locus_tag="OQQ19_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HCS1801977.1"
                     /translation="MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQ
                     RAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQD
                     PNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGR
                     TAMASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWSELDEQTQAL
                     YPQQNLRQPVRIVIDSQNRVTPEHHIVQQPGETWFARTQEDSREWPETVRTLLIPEHK
                     GHLDLVVLMMQLGKQQINSIWGEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLC
                     TLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGA"
     gene            40077..40547
                     /gene="ribE"
                     /locus_tag="OQQ19_000219"
     CDS             40077..40547
                     /gene="ribE"
                     /locus_tag="OQQ19_000219"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HCS1801978.1"
                     /translation="MNIIEANVATPDARVAITIARFNNFINDSLLEGAIDALKRIGQV
                     KDENITVVWVPGAYELPLAAGALAKTGKYDAVIALGTVIRGGTAHFEYVAGGASNGLA
                     HVAQDSEIPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA"
     gene            40567..40986
                     /gene="nusB"
                     /locus_tag="OQQ19_000220"
     CDS             40567..40986
                     /gene="nusB"
                     /locus_tag="OQQ19_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HCS1801979.1"
                     /translation="MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD
                     VLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKV
                     AINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK"
     gene            41064..42041
                     /gene="thiL"
                     /locus_tag="OQQ19_000221"
     CDS             41064..42041
                     /gene="thiL"
                     /locus_tag="OQQ19_000221"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HCS1801980.1"
                     /translation="MACGEFSLIARYFDRVRSSRLDVELGIGDDCALLNIPEKQTLAI
                     STDTLVAGNHFLPDIDPADLAYKALAVNLSDLAAMGADPAWLTLALTLPDVDEAWLES
                     FSDSLFDLLNYYDMQLIGGDTTRGPLSMTLGIHGFVPMGRALTRSGAKPGDWIYVTGT
                     PGDSAAGLAILQNRLQVADAKDADYLIKRHLRPSPRILQGQALRDLANSAIDLSDGLI
                     SDLGHIVKASDCGVRIDLALLPFSDALSRHVEPEQALRWALSGGEDYELCFTVPELNR
                     GALDVALGHLGVPFTCIGQMTADIEGLCFIRDGEPVTLDWKGYDHFATP"
     gene            42019..42537
                     /gene="pgpA"
                     /locus_tag="OQQ19_000222"
     CDS             42019..42537
                     /gene="pgpA"
                     /locus_tag="OQQ19_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HCS1801981.1"
                     /translation="MTILPRHKDVAKSRLKMSNPWHLLAVGFGSGLSPIVPGTMGSLA
                     AIPFWYLMTFLPWQLYSLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITL
                     MALPTNDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILY
                     FIGHHWPLGILS"
     gene            complement(42591..43565)
                     /gene="yajO"
                     /locus_tag="OQQ19_000223"
     CDS             complement(42591..43565)
                     /gene="yajO"
                     /locus_tag="OQQ19_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414953.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxyxylulose-5-phosphate synthase YajO"
                     /protein_id="HCS1801982.1"
                     /translation="MQYNPLGKTDLRVSRLCLGCMTFGEPDRGNHAWTLPEESSRPII
                     KRALEGGINFFDTANSYSDGSSEEIVGRALRDFARREDVVVATKVFHRVGDLPEGLSR
                     AQILRSIDDSLRRLGMDYVDILQIHRWDYNTPIEETLEALNDVVKAGKARYIGASSMH
                     ASQFAQALELQKQHGWAQFVSMQDHYNLIYREEEREMLPLFYQEGVAVIPWSPLARGR
                     LTRPWGETTARLVSDEVGKNLYKESDENDAQIAERLTGVSEELGATRAQVALAWLLSK
                     PGIAAPIIGTSREEQLDELLNAVDITLKPEQIAELETPYKPHPVVGFK"
     gene            complement(43620..45482)
                     /gene="dxs"
                     /locus_tag="OQQ19_000224"
     CDS             complement(43620..45482)
                     /gene="dxs"
                     /locus_tag="OQQ19_000224"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HCS1801983.1"
                     /translation="MSFDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVS
                     RSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKG
                     GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMA
                     FEAMNHAGDIRPDMLVVLNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSG
                     VPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGPQ
                     FLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAA
                     KDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIY
                     STFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMT
                     PSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEKLPIGKGIVKRRGEKLAI
                     LNFGTLMPEAAKVAESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAG
                     SGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWLA"
     gene            complement(45507..46406)
                     /gene="ispA"
                     /locus_tag="OQQ19_000225"
     CDS             complement(45507..46406)
                     /gene="ispA"
                     /locus_tag="OQQ19_000225"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl diphosphate synthase"
                     /protein_id="HCS1801984.1"
                     /translation="MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGG
                     KRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCH
                     VKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQAL
                     DLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLA
                     FQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQ
                     LAEQSPDTSALEALADYIIQRNK"
     gene            complement(46406..46648)
                     /gene="xseB"
                     /locus_tag="OQQ19_000226"
     CDS             complement(46406..46648)
                     /gene="xseB"
                     /locus_tag="OQQ19_000226"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HCS1801985.1"
                     /translation="MPKKNEAPASFEKALSELEQIVTRLESGDLPLEEALNEFERGVQ
                     LARQGQAKLQQAEQRVQILLSDNEDASLTPFTPDNE"
     gene            46854..48302
                     /gene="thiI"
                     /locus_tag="OQQ19_000227"
     CDS             46854..48302
                     /gene="thiI"
                     /locus_tag="OQQ19_000227"
                     /EC_number="2.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014168857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HCS1801986.1"
                     /translation="MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVV
                     RHWDNIEVRAKDENQRLAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALVQYRDQL
                     EGKTFCVRVKRRGKHDFSSIDVERYVGGGLNQHIESARVKLTNPEVTVHLEVEDDRLL
                     LIKGRYEGIGGFPIGTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEI
                     GVRQVAHYLWNRFGSSHRVRFVAINFEPVVGEILEKIDDGQMGVILKRMMVRAASKVA
                     ERYGVQALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLISYDKEHIINLARQIGTE
                     DFARTMPEYCGVISKSPTVKAVKSKIEAEEEKFDFSILDKVVEEANNVDIREIALQTE
                     QEVVEVETVNGFGPNDVILDIRSIDEQEDKPLKVEGIDVVSLPFYKLSTKFGDLDQNR
                     TWLLWCERGVMSRLQALYLREQGFNNVKVYRP"
     gene            complement(48356..48946)
                     /gene="yajL"
                     /locus_tag="OQQ19_000228"
     CDS             complement(48356..48946)
                     /gene="yajL"
                     /locus_tag="OQQ19_000228"
                     /EC_number="3.5.1.124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308505.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein deglycase YajL"
                     /protein_id="HCS1801987.1"
                     /translation="MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLA
                     ITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIV
                     AAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVKLLTSQGPGT
                     AIDFGLKIIDLQVGREKAHEVASQLVMAAGIYNYYE"
     gene            complement(48909..49820)
                     /gene="panE"
                     /locus_tag="OQQ19_000229"
     CDS             complement(48909..49820)
                     /gene="panE"
                     /locus_tag="OQQ19_000229"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HCS1801988.1"
                     /translation="MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSANLVET
                     DGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGT
                     IEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVL
                     PDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIERE
                     GHHTSAEDLRDYVMQVIDATAENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVP
                     ENTRLFEMVKRKESEYERIGTGLPRPW"
     gene            49988..50479
                     /gene="yajQ"
                     /locus_tag="OQQ19_000230"
     CDS             49988..50479
                     /gene="yajQ"
                     /locus_tag="OQQ19_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414960.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide binding protein YajQ"
                     /protein_id="HCS1801989.1"
                     /translation="MPSFDIVSEVDLQEARNAVDNASREVESRFDFRNVEASFELNDA
                     SKTIKVLSESDFQVNQLLDILRAKLLKRGIEGSSLDVPENIVHSGKTWFVEAKLKQGI
                     ESATQKKIVKMIKDSKLKVQAQIQGDEIRVTGKSRDDLQAVMAMVRGGDLGQPFQFKN
                     FRD"
     gene            complement(50607..51971)
                     /locus_tag="OQQ19_000231"
     CDS             complement(50607..51971)
                     /locus_tag="OQQ19_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308508.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1801990.1"
                     /translation="MNDYKMTPGERRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQG
                     ASEALIGIAIGIYGLTQAVFQIPFGLLSDRIGRKPLIVGGLAVFAAGSVIAALSDSIW
                     GIILGRALQGSGAIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITH
                     KLGLHALFWMIAILATTGIALTIWVVPNSSTHVLNRESGMVKGSFSKVLAEPRLLKLN
                     FGIMCLHILLMSTFVALPGQLADAGFPAAEHWKVYLATMLIAFGSVVPFIIYAEVKRK
                     MKQVFVFCVGLIVVAEIVLWNAQTQFWQLVVGVQLFFVAFNLMEALLPSLISKESPAG
                     YKGTAMGVYSTSQFLGVAIGGSLGGWIDGMFDGQGVFLAGAMLAAVWLAVASTMKEPA
                     YVSSLRIEIPANIAANEALKVRLLETEGIKEVLIAEEEHSAYVKIDSKVTNRFDVEQA
                     IRQA"
     gene            complement(52120..53010)
                     /gene="cyoE"
                     /locus_tag="OQQ19_000232"
     CDS             complement(52120..53010)
                     /gene="cyoE"
                     /locus_tag="OQQ19_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX farnesyltransferase"
                     /protein_id="HCS1801991.1"
                     /translation="MMFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLV
                     GVSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGLISPAVSLVYATLLGIAGFMLLW
                     FGANPLACWLGVMGFVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGEFDS
                     GAAILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAV
                     ATLMLSLGGYAGYKYLVVAAAVSVWWLGMALRGYKVADDRIWARKLFGFSIIAITALS
                     VMMSVDFMVPDSHTLLAAVW"
     gene            complement(53022..53351)
                     /locus_tag="OQQ19_000233"
     CDS             complement(53022..53351)
                     /locus_tag="OQQ19_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit IV"
                     /protein_id="HCS1801992.1"
                     /translation="MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPA
                     VILGTILAMAVVQVLVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNL
                     NYNMMMH"
     gene            complement(53351..53965)
                     /locus_tag="OQQ19_000234"
     CDS             complement(53351..53965)
                     /locus_tag="OQQ19_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit III"
                     /protein_id="HCS1801993.1"
                     /translation="MATDTLTHATAHAHEHGHHDAGGTKIFGFWIYLMSDCILFSILF
                     ATYAVLVNGTASGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWL
                     ALTCLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVL
                     MVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM"
     gene            complement(53955..55946)
                     /gene="cyoB"
                     /locus_tag="OQQ19_000235"
     CDS             complement(53955..55946)
                     /gene="cyoB"
                     /locus_tag="OQQ19_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002444673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit I"
                     /protein_id="HCS1801994.1"
                     /translation="MFGKLSLDAVPFHEPIVMVTIAGIILGGLALVGLITYFGKWTYL
                     WKEWLTSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQI
                     FTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSL
                     GVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAP
                     GMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYI
                     NLIWAWGHPEVYILILPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSFIVWLHH
                     FFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFS
                     VGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMIYWWPKAFGFKLNE
                     TWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQIDPQFHTMLMIAASGAVLIALG
                     ILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWANSSPPPFYNFAVVPHVHERDAFWE
                     MKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIIT
                     WIVKSFDEDVDYYVPVAEIEKLENQHFDEITKAGLKNGN"
     gene            complement(55968..56915)
                     /gene="cyoA"
                     /locus_tag="OQQ19_000236"
     CDS             complement(55968..56915)
                     /gene="cyoA"
                     /locus_tag="OQQ19_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit II"
                     /protein_id="HCS1801995.1"
                     /translation="MRLRKYNKSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLI
                     LTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIF
                     LAVLTWKTTHALEPSKPLAHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTP
                     VYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGM
                     KFKAIATPDRAEFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFAD
                     VINKFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAESAH"
     gene            complement(57376..58851)
                     /gene="ampG"
                     /locus_tag="OQQ19_000237"
     CDS             complement(57376..58851)
                     /gene="ampG"
                     /locus_tag="OQQ19_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="muropeptide MFS transporter AmpG"
                     /protein_id="HCS1801996.1"
                     /translation="MSSQYLRIFQQPRSAILLILGFASGLPLALTSGTLQAWMTVENI
                     DLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFFGRRRGWLLATQILLLVAIAAMGFLE
                     PGTQLRWMAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSG
                     GLALWLADKWLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDF
                     FGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGA
                     LYGGILMQRLSLFRALLIFGILQGASNAGYWLLSITDKHLYSMGAAVFFENLCGGMGT
                     SAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWSTFYLFSVAAA
                     VPGLILLLVCRQTLEYTRVNDNFISRTEYPAGYAFAMWTLAAGVSLLAVWLLLLTMDA
                     LDLTHFSFLPALLEVGVLVALSGVVLGGLLDYLALRKTHLT"
     gene            complement(58895..59473)
                     /locus_tag="OQQ19_000238"
     CDS             complement(58895..59473)
                     /locus_tag="OQQ19_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1801997.1"
                     /translation="MFKKILFPLVALFMLAGCAKPPTTIEVSPTITLPQQDPSLMGVT
                     VSINGADQRTDQALAKVTRDNQIVTLAASRDLRFLLQEVLEKQMTARGYMVGPNGPVN
                     LQIIVSQLYADVSQGNVRYNIATKADIAIIATAQNGNKITKNYRASYNVEGAFQASNK
                     NIADAVNSVLTDTIADMSQDTSIHEFIKQNAR"
     gene            59778..60095
                     /gene="bolA"
                     /locus_tag="OQQ19_000239"
     CDS             59778..60095
                     /gene="bolA"
                     /locus_tag="OQQ19_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414969.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator BolA"
                     /protein_id="HCS1801998.1"
                     /translation="MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLV
                     SDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTYTIKEWEGLQDTVFASPPCRGAG
                     SIA"
     gene            60439..61737
                     /gene="tig"
                     /locus_tag="OQQ19_000240"
     CDS             60439..61737
                     /gene="tig"
                     /locus_tag="OQQ19_000240"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001716227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HCS1801999.1"
                     /translation="MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGF
                     RKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGED
                     FTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDSAVEA
                     EDRVTIDFTGSVDSEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFP
                     EEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMER
                     ELKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEKQALELPR
                     ELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYEDPKEVIEFYSKNK
                     ELMDNMRNVALEEQAVEAVLAKAKVTEKETTFNELMNQQA"
     gene            61982..62605
                     /gene="clpP"
                     /locus_tag="OQQ19_000241"
     CDS             61982..62605
                     /gene="clpP"
                     /locus_tag="OQQ19_000241"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006809880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HCS1802000.1"
                     /translation="MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIF
                     LTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVS
                     TICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVK
                     GRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN"
     gene            62731..64005
                     /gene="clpX"
                     /locus_tag="OQQ19_000242"
     CDS             62731..64005
                     /gene="clpX"
                     /locus_tag="OQQ19_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001396736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HCS1802001.1"
                     /translation="MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLC
                     NDIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG
                     DTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN
                     IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT
                     VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKA
                     KSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALT
                     KQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMED
                     VEKVVIDESVIDGQSKPLLIYGKPEAQQASGE"
     gene            64193..66547
                     /gene="lon"
                     /locus_tag="OQQ19_000243"
     CDS             64193..66547
                     /gene="lon"
                     /locus_tag="OQQ19_000243"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001469947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HCS1802002.1"
                     /translation="MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAM
                     DHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISA
                     LSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSID
                     DPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVK
                     KQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQ
                     KLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRI
                     LEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR
                     GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNV
                     AFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLP
                     KQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLK
                     HIEINGDNLHDYLGVQRFDYGRADNENCVGQVTGLAWTEVGGDLLTIETACVPGKGKL
                     TYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGI
                     AMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFEN
                     KRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGMQVVTAK"
     gene            66756..67028
                     /gene="hupB"
                     /locus_tag="OQQ19_000244"
     CDS             66756..67028
                     /gene="hupB"
                     /locus_tag="OQQ19_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016535194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein HU-beta"
                     /protein_id="HCS1802003.1"
                     /translation="MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVAL
                     VGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN"
     gene            67220..69091
                     /gene="ppiD"
                     /locus_tag="OQQ19_000245"
     CDS             67220..69091
                     /gene="ppiD"
                     /locus_tag="OQQ19_000245"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCS1802004.1"
                     /translation="MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAK
                     VNDQEISRGQFENAFNSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLD
                     QYARELKLGISDEQVKQAIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQL
                     TTQQLINGVAGTDFMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYY
                     EQNKNNFMTPEQFRVSYIKLDAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQT
                     KTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKE
                     KGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVS
                     DAASNDTESLAGAEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPG
                     INSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLV
                     DLKAGKGAEAMQAAGLKFGEPKTLSRSGRDPISQAAFALPLPAKDKPSYGMATDMQGN
                     VVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ"
     gene            69242..69613
                     /locus_tag="OQQ19_000246"
     CDS             69242..69613
                     /locus_tag="OQQ19_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HCS1802005.1"
                     /translation="MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAA
                     QSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVED
                     LKQVPGMGNSLVERNLAVLTL"
     gene            69707..70105
                     /gene="fadM"
                     /locus_tag="OQQ19_000247"
     CDS             69707..70105
                     /gene="fadM"
                     /locus_tag="OQQ19_000247"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain acyl-CoA thioesterase FadM"
                     /protein_id="HCS1802006.1"
                     /translation="MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWM
                     TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITLEPEGQVVADA
                     LITFVCIDLKTQKALALEGELREKLEQMVK"
     gene            complement(70157..70852)
                     /gene="queC"
                     /locus_tag="OQQ19_000248"
     CDS             complement(70157..70852)
                     /gene="queC"
                     /locus_tag="OQQ19_000248"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HCS1802007.1"
                     /translation="MKRAVVVFSGGQDSTTCLVQALQQYDEVHCVTFDYGQRHRAEID
                     VARELALKLGARAHKVLDVTLLNELAVSSLTRDSIPVPDYEPEADGIPNTFVPGRNIL
                     FLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLGMAKDIRFETPL
                     MWIDKAETWALADYYGKLDLVRNETLTCYNGIKGDGCGHCAACNLRANGLNHYLADKP
                     TVMAAMKQKTGLR"
     gene            complement(70917..72618)
                     /locus_tag="OQQ19_000249"
                     /pseudo
     CDS             complement(70917..72618)
                     /locus_tag="OQQ19_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308526.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SgrR family transcriptional regulator"
     gene            72718..73500
                     /gene="cof"
                     /locus_tag="OQQ19_000250"
     CDS             72718..73500
                     /gene="cof"
                     /locus_tag="OQQ19_000250"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414980.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HMP-PP phosphatase"
                     /protein_id="HCS1802008.1"
                     /translation="MARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGR
                     HALEMQHILGALSLDAYLITGNGTLVHSLEGELLHRDDLPADVAELVLYQQWDTRASM
                     HIFNDDGWFTGKEIPALLQAFVYSGFRYQIIDVKKMPLGSVTKICFCGDHDDLTRLQI
                     QLYEALGERAHLCFSATDCLEVLPVGCNKGAALTVLTQHLGLSLRDCMAFGDAMNDRE
                     MLGSVGSGFIMGNAMPQLRAELPHLPVIGHCRNQAVSHYLTH"
     gene            73689..74147
                     /gene="decR"
                     /locus_tag="OQQ19_000251"
     CDS             73689..74147
                     /gene="decR"
                     /locus_tag="OQQ19_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308528.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator DecR"
                     /protein_id="HCS1802009.1"
                     /translation="MLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLED
                     DGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGE
                     YDYLMRVQVADMKRYDEFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE"
     gene            74177..75810
                     /locus_tag="OQQ19_000252"
                     /pseudo
     CDS             74177..75810
                     /locus_tag="OQQ19_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308529.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SmdA family multidrug ABC transporter
                     permease/ATP-binding protein"
BASE COUNT        18487 a        18796 c        20191 g        18336 t
ORIGIN      
        1 acgtagatca agactggtcc gcgaacgtgg gtgttaaata tacttggtaa tattcttcac
       61 tccgaagaaa ttctggtaat ttaatctaaa taatgcccgt caaggatttg acgggcatta
      121 ctgcaaagga cgcgcaaatg ttatctgtag ttaaacctct tcaggaattt ggtaagctcg
      181 ataaatgttt gtccagatac ggtacgcgct tcgagtttaa taatgaaaag caagttatat
      241 tttccagtga tgtcaatagc gaagatactt tctttatttt agagggcgtt atctctctgc
      301 gtagagaaga aaacgtactt atcggtatta cccaggcttc ttatattatg gggctggctg
      361 atggtttaat gaaaaacgat ataccataca aattaatatc agaaggaaat tgtacgggat
      421 atcatctacc agccaaacaa accattacgc ttattgaaca aaatcaactc tggcgagacg
      481 ctttttactg gttagcctgg caaaatagaa ttctggaatt acgcgacgtg cagctcattg
      541 ggcataattc ctacgaacaa atccgcgcaa cattattatc aatgattgac tggaatgaag
      601 aattgcgatc acgtattggt gtgatgaatt atatccatca acgtacacgc atatcgcgtt
      661 ctgtcgtcgc agaagttctc gctgctttgc gtaaaggcgg ctatatcgaa atgaataaag
      721 gcaaactggt cgctatcaac tgtttgcctt cagagtatta atcaggatgc agggataacc
      781 aacggtttat tcccgcttag ctcggtcacc agatcattga tgccatcgct catattttta
      841 aagcgcgtca acggcgaacg agtgaccacc acaaacgcgc caatattctt ctgcgggatc
      901 atcgccatat aggtaatgaa accgccacca ccgcctgtct tctgaataat ccccggacga
      961 ccctctttcg gggccatata tacccagcct aaaccaagcg catccgcttt gccggggaca
     1021 tccatgccaa tcactttggt aaactgcgcg cgctgataaa tcaacgtctg catgcgatct
     1081 gcctggttac tgcgctgata aaaatcagat gataaatact gctgcatcca gcgcatcata
     1141 tcgccaggcg tggaatagac gccgccgctg ccaattgccg ccagcgtgtt attgcacgga
     1201 ctggcaccgc gctcagcaac cattaagcgg cggcactgat ccggtgaggg ggtgtaggtg
     1261 gtgtctttca tccccaatgg acgggtaatc tgctcttcaa acaactgggt ataaggcttg
     1321 ccggacgcat tcgccagtgc atctgccagc aggtcgaacg caaggttaga gtacgccgcc
     1381 tgactgcctg gcgcggcttt cagcttcgcc gtagaaaggt atttccagcg ttgctcgcgc
     1441 gttggccaga caaacaccgg acgatgtgcc gcgccaccgg gctgttcacg gggcagggcg
     1501 ctggtatggg ttgccagatt cactagggta atgggcgtcc cattgtaggt tggcacgcgt
     1561 gcgcctggcg gagcatattt acttagcgga tcgtttaact tcacggtccc ctggtcgagc
     1621 aatttcacca gcatttcact ggtcattagc ttggtgaggg aagcaatacg cacgaccgaa
     1681 tccagctgcg ggcgaacgtt attaccaggt cgcgtttcgc cataactgcg aaagacgcgc
     1741 tggttaccgt cgataacaac cagcgccatc cccgtggcac cgctgccgta aaaaatatga
     1801 tcggcataac gatcgacaat atcagaggca aactccggtt cagtgatcgg ctgcgccgca
     1861 tggacggagg tcaatgacgc cgcacacagc acggcagaaa aaagcagact acgtttcaac
     1921 ggtggtgtcc atagattgaa tgaaggtaac tgagcgtatt tatactactc attgatggat
     1981 tgcaaagggc gaattagtgc aataatagtg ttaaaaacgt aacggcgcgt aaacacgatc
     2041 tttttcctgc tcaccaatgc ctgcatttgt gatcctgcgc gtgttaatcc gcttatgtaa
     2101 acaatctttg gtttgtgaaa tccgtcgaaa caattcttat ggtcaggctg gcgaactaag
     2161 cgccttgcta tgggtcacaa tgggcggttt catttggctg acgctttgta gtggtcatgc
     2221 ggttaataca cagcagttgt taaaacgata agaagttagc aggagtgcat atgtttaagt
     2281 cttttttccc aaagccggga gcgttttttc tctcggcctt tgtttgggca ttgattgccg
     2341 ttatcttctg gcaagccggt gggggagact gggtggcgcg tatcaccggc gcttccgggc
     2401 agatcccgat tagcgccgcg cgtttctggt cgttggattt cctgattttt tacgcttact
     2461 acattgtttg cgtaggactt tttgcatttt tctggtttat ctacagcccg caccgttggc
     2521 aatactggtc aatactcggt actgcactga tcatcttcgt cacctggttt ttggtggaag
     2581 tcggagtcgc cgtcaacgcc tggtatgcac cgttctatga tctgattcaa accgcgctaa
     2641 gttcgccgca taaagtcact atcgaacaat tttaccgcga agtgggcgtc tttctgggga
     2701 ttgcgctgat cgcggtggtg atcagtgtac tgaacaactt ctttgtcagt cactatgtgt
     2761 tccgctggcg tacggcgatg aacgaatatt acatggcgaa ctggcaacaa ctgcgtcata
     2821 tcgaaggtgc cgcacagcgt gtgcaggaag acaccatgcg ttttgcttca acgctggaga
     2881 atatgggcgt cagttttatc aacgccatca tgacgttggt cgccttcctg ccggtgctgg
     2941 taacgctctc cgcgcatgtg ccggagctgc cgattatcgg gcacattccg tatggtctgg
     3001 tgattgccgc tatcgtctgg tcgctgatgg ggaccggatt gctggcagtg gtagggatca
     3061 aactgccggg gctggagttt aaaaaccagc gagtagaggc cgcctaccgt aaagagctgg
     3121 tttatggtga agacgatgcc acgcgcgcga cgccgcctac ggtacgcgag ctgtttagcg
     3181 ccgtacggaa aaactatttt cgcctctatt ttcactatat gtatttcaac atcgcccgca
     3241 ttctctattt gcaggtcgat aacgttttcg gtttgttctt gctgtttccg tcaattgttg
     3301 ccggtacgat tacgctcggc ctgatgacgc agattaccaa cgtttttggt caggttcgcg
     3361 gtgctttcca gtacctgatt aactcatgga ccacactggt tgagttgatg tctatctaca
     3421 aacgtctgcg cagctttgaa catgagctgg atggtgacaa aattcaggaa gtaacccata
     3481 ccttgagcta aaaaggagaa gtaatgtcgc gcgtcaatca tctatcttcg ctgtcattgt
     3541 tggcggttct ggttttagcg gggtgtagta gtcaggctcc gcaaccgttg aaaaagggcg
     3601 aaaaagcgat agatgtagcg agcgtcgtgc ggcagaagat gcctgcgagc gtgaaagacc
     3661 gcgatgcctg ggcgaaagat ctcgccacca cctttgaaag tcaggggctg gcaccgacgc
     3721 tggaaaacgt ctgctcggtg ctggcggtgg cgcagcagga gtcaaattat caggcagatc
     3781 cggccgttcc gggcttaagc aagatcgcct ggcaagagat tgaccgtcgt gctgaacgga
     3841 tgcacattcc tgcttttctg gttcataccg cgctaaaaat caaatcgcca aacggcaaaa
     3901 gttatagcga acggttagat tcggtgcgta cagaaaagca attgagcgcg atttttgacg
     3961 atctgatcag catggtacca atggggcaga cgctgtttgg ttcgcttaat ccggtgcgca
     4021 ccggtgggcc gatgcaggtc agcattgctt ttgccgaaca gcataccaaa gggtatccgt
     4081 ggaaaatgga cggtacagtt cgtcaggaag tcttcagtcg ccgcggcggg ttgtggtttg
     4141 gtacttacca tttactgaat tatcccgcca gctatagcgc accgatatac cgctttgctg
     4201 attttaacgc tggctggtac gccagccgta atgccgcgtt tcagaacgcg gtcagtaagg
     4261 ccagcggcgt gaagctggca ctggacggtg atttaattcg ttacgacagt aaagaacccg
     4321 ggaaaaccga actggcaacg cgcaaactgg cgggaaaact ggggatgagc gacagcgaaa
     4381 ttcgccgtca gttagagaaa ggtgacagct tctcttttga ggagacggcg ctgtacaaga
     4441 aagtttatca acttgccgaa gcgaaaacgg gtaaatcact accccgcgaa atgttgcctg
     4501 gcattcaact ggaaagcccg aaaatcaccc gcaacctgac tacggcctgg tttgcgaagc
     4561 gcgtagacga acggcgggcg cgttgtatga aacagtgatc aaacaggaat gtcatgccag
     4621 ataaggcgtt ttaggccgta tctggcaacg taaatcttac tggcggcgat gtcgccagtg
     4681 cagccatagc gccaccactg caaaaatgag gcagcctact aaaaacggga tcagcccgaa
     4741 aatggtgccg acacctaaac caatttccac ccgtgggcga cctgtttcct ggacctgcat
     4801 taaacgctca tagacgccgg gcgcatgcac taacaggttc agcaattgcg ccccagccca
     4861 aaagcaaaac agcacaaaca acgcataggc aatgttgcca ggcgttgaag aggcattgcg
     4921 atattttccg ctaaacagcg attttgacag ggtgaaatca gccataaaaa cctccggaag
     4981 tcatctgctt ctcttctggt gtgataccag cggcttatgg caagtctgac aggtcattta
     5041 gattgtcaat atcagaatca tggtaaattg atgttgggaa tattcccgaa gcgtgaatct
     5101 tcgttgtgag tcacaaaatg gcaaccttaa gttaaattta ttaacaatta cgaaaatgtt
     5161 gtctacacca cagacggttg ttacagaata tgcaaggatg ttgtttttcg ttaacggagc
     5221 tgccatgaat ctgcctgtaa aaatccgccg tgactggcac tactatgcgt tcgccattgg
     5281 ccttatattc attcttaatg gcgtggtggg gttactggga tttgaagcaa aaggttggca
     5341 gacctatgcc gtcggtctgg tgacgtgggt gattagtttc tggctggcgg ggttgattat
     5401 tcgtcgtcgc gatgaagaaa ctgaaaacgc ccaataagaa tattatcggg cgttaaaata
     5461 ttacattgtg gttttcaatg cgttatccgc agcgtgacgc tccagcgcca gctcaatcaa
     5521 acgtgtgatc agatcggtgt aacccagacc gctggcttgc cacagcttcg gatacatact
     5581 gatgttggtg aagccaggca gtgtgttgat ctcgttgatc accacttcgt tctctggggt
     5641 taaaaacacg tctacacgcg ccatgcctgc gcatcccaac gtttgataag cctgaacggc
     5701 aatcgcccgg atcttatcgt tgatttctgg cgcaatggct gccggaacta ccactttcgc
     5761 gccatcttcg tcaatgtact tggtgtcgta ggcatagaag tcgctggtga gtacgatctc
     5821 gccacaggtg ctggcttgcg ggttgtcgtt gcccagaact gcgcattcga tctcacgacc
     5881 tttgatccct tgctcaacga tcactttatg atcgaattcg aacgccagat cgacggcaat
     5941 tgcgtactgt tcttcactgg ttactttgct gacaccaaca gaagagccct gattagccgg
     6001 ttttacaaac agtggtaacc tcagtttaga ctccacttcg gcaaaactaa tgttgtgacg
     6061 attggcgcgc gtcagggtaa taaatggcgc aatgttcagc ccggcatcgc gcagcagacg
     6121 tttggtaaca tctttatcca tacaggctgc tgaagccaga acatcagaac ctacaaacgg
     6181 taaattggcg acccgcagca ttccctgcaa ggaaccatct tcgcccagcg taccgtggac
     6241 aatcgggaaa atgacatcca ccgtcggtaa cggctgaccg ttttgcgcgt cgataagctg
     6301 atgctcatgt ttacttggca cctgcgcaag gctagtcgcc gaagggcgca acgcaatatg
     6361 ggcaggatcg tctgcattta gcagataatt gctggcatcg ctgacgtgcc attgcccttg
     6421 tttatcaatg cccagcagca caacgtcgaa gcgactttta tcaatggcat cgacaatgtt
     6481 ttttgccgat tgcagagaca cttcatgttc cgctgattta ccaccaaaaa cgattcctac
     6541 ccgcagtttt tccatcttaa aaacctatcc cgtctaacac aaagtgcata cattaccacg
     6601 acaaaacggg ggattcgcgg ccttctgaca gaatgttgca atcttctgct gacaaagcgt
     6661 gcaacgtaat ggtgaagaaa gtgcgttatt acaaagatgt gcgcgagatc acaaaaatga
     6721 tgaacgggaa gctaatttat tcctggctta aatggccatg cggtgagttt tttctcttag
     6781 ttgtaagtaa acgcagagaa tatatttcat aacttttgtt tataataaag gttgataatt
     6841 aaaggcctgt tctttgtgtg gttaattatt taaatatgag aaacgtttcg ctggtaatca
     6901 aacaaagaac atttgcgcaa agtatttcct ttgtcataaa aataatactt ccagacacta
     6961 tgaagttgtg aaacataatg ttaacttctc catacgttgg ataaggaaat acagacatga
     7021 aaaatctcat tgctgagttg ttattaaagc ttgcccaaaa agaagaagag tcgaaagaac
     7081 tgtgcgcgca ggtagaagct ttggagatta tcgtcactgc aatgcttcgc aatatggcac
     7141 aaaatgacca acagcgcttg attgaacagg tggagggggc tctttacgag gtaaagcctg
     7201 atgccagcat tcctgacgac gatacggagc tgctgcgcaa ttatgtaaag aagttattga
     7261 agcatcctcg tcagtaaaaa gttaatcttt tcaacagctg tcataaagtt gtcacggccg
     7321 agacttatag tcgctttgtt tttatttttt aatgtatttg tacatggaga aaataaagtg
     7381 aaacaaagca ctattgcact ggcactctta ccgttactgt ttacccctgt gacaaaagcc
     7441 cggacaccag aaatgcctgt tctggaaaac cgggctgctc agggcgatat tactgcaccc
     7501 ggcggtgctc gccgtttaac gggtgatcag actgccgctc tgcgtgattc tcttagcgat
     7561 aaacctgcaa aaaatattat tttgctgatt ggcgatggga tgggggattc ggaaattaca
     7621 gccgcacgta attatgccga aggtgcgggc ggctttttta aaggtatcga tgccttaccg
     7681 cttaccgggc aatacactca ctatgcgctg aataaaaaaa ccggcaaacc ggactacgtc
     7741 accgattcgg ctgcatcagc aaccgcctgg tcaaccggtg tcaaaaccta taacggcgcg
     7801 ctgggcgtcg atattcacga aaaagatcac ccaacgattc tggaaatggc aaaagccgca
     7861 ggtctggcga ccggtaacgt ttctaccgca gagttgcagg atgccacgcc cgctgcgctg
     7921 gtggcacatg tgacttcgcg caaatgctac ggtccgagcg cgaccagtga aaaatgtccg
     7981 ggtaacgctc tggaaaaagg cggaaaagga tcgattaccg aacagctgct taatgctcgt
     8041 gccgacgtta cgcttggcgg tggcgcaaaa acctttgctg aaacggcaac cgccggtgaa
     8101 tggcagggaa aaacgctgcg tgaacaggca caggcgcgtg gttatcagtt ggtcagcgat
     8161 gccgcctcgc taaatgcggt gacggaagcg aatcagcaaa aacctctgct tggactgttt
     8221 gctgacggca atatgccagt gcgctggcta ggaccgaaag caacgtacca cggcaatatc
     8281 gataagcccg cagtcacctg tacgcttaat ccgcaacgta atgacagtgt accaaccctg
     8341 gcgcagatga ccgacaaagc cattgaattg ttgagtaaaa atgagaaagg atttttcctg
     8401 caagttgaag gtgcgtcaat cgataaacag gatcacgctg cgaatccttg tgggcaaatt
     8461 ggcgagacgg tcgatctcga tgaagccgta caacgggcgc tggaattcgc taaaaaggat
     8521 ggcaacacgc tggtcatagt caccgctgat cacgcccacg ccagccagat tgtcgcgccg
     8581 gataccaaag ctccgggcct cacccaggcg ctaaatacca aagatggcgc agtgatggtg
     8641 atgagctacg ggaactccga agaggattca caagaacata ccggcagtca gttgcgtatt
     8701 gcggcgtatg gcccgcatgc cgccaatgtc gttggactga ccgaccagac cgatctcttc
     8761 tacaccatga aagccgccct ggggctgaaa taaaaccgcg cccggcagtg aattttcgct
     8821 gccgggtggt ttttttgctg ttagcaacca gacttaatgg caaatctcgg gcgcatacgc
     8881 tcatggttaa aacatgaaga gggatggtgc tatgaaaatt acattactgg ttaccttgct
     8941 tttcggtctg gtttttttaa ccacagtcgg cgctgccgag agaacgttaa ccccacaaca
     9001 acagcgtatg acctcctgta atcagcaggc gacggcgcag gcgttgaaag gggatgctcg
     9061 taagacctac atgagtgatt gcctgaagaa cagcaagtct gcgcctggtg aaaaaagttt
     9121 gacgccacag cagcaaaaga tgcgcgaatg taataatcaa gcaacgcaac aatctctgaa
     9181 aggtgatgat cgtaataagt ttatgagtgc ctgcctcaag aaagccgcct gatacctgat
     9241 agtgctaacg ggtgagctac gaaagtggct cacccgaaat ttcatacttc tgcctttagc
     9301 cccgtctcta taatttggga aaattgtttc tgaatgttcc caaaaataat gaatgatgaa
     9361 aactttttca aaaaagcggc ggcgcatggg gaggaacctc ctttaactcc tcaaaacgaa
     9421 catcagcggt ccgggctgcg cttcgcccgt cgcgtcagac taccccgtgc ggttggcctg
     9481 gctggcatgt tcttaccgat tgcttcaacg ctggtttcgc acccgccgcc gggctggtgg
     9541 tggctagtgt tggtcggctg ggcgttcgtc tggccgcatt tagcctggca gatagcgagc
     9601 agggccgtcg atccgcttag ccgggaaatt tacaacttaa aaaccgatgc agtattagcg
     9661 ggaatgtggg taggcgtaat gggcgtaaac gtgctgcctt ccaccgctat gttgatgatt
     9721 atgtgtctga atttgatggg ggcaggcggc ccccgtctgt ttgtcgcggg tctggtgttg
     9781 atggtggttt cctgccttgt caccctcgag cttacgggca ttaccgtgtc gttcaatagt
     9841 gcgccgctgg aatggtggct ctcccttccc attattgtcg tttatcctct gctgtttggc
     9901 tgggtcagct accagacggc aaccaaactg gcggaacata aacgcaggtt gcaggtcatg
     9961 agtacccgcg acggcatgac gggcgtgtat aaccgacgtc attgggaaac tatgttacgc
    10021 aatgaatttg ataactgtcg gcggcataat cgcgatgcaa cgttactgat tatcgatatc
    10081 gaccatttca agagcatcaa cgatacctgg ggtcatgatg tgggcgatga agcgattgtg
    10141 gcgcttaccc gacagttaca aattaccctg cgcggtagcg atgtgattgg tcggtttggc
    10201 ggcgatgagt ttgcagtaat catgtccggt acgccagctg agagcgccat taccgccatg
    10261 ttacgggtgc gtgaagggct aaacacgtta cgcttgccga atacgccaca ggtaacttta
    10321 cggattagtg tgggggttgc gccgctgaac ccacaaatga gtcactatcg tgagtggttg
    10381 aaatcggcag atttggcgct ttacaaagca aagaaagccg gacgtaaccg caccgaagtg
    10441 gcggcctgac gtcaggcgaa agtcatcagg atttgctgag tttttctgat ttttccatac
    10501 acttcgtcat cgcttcgatc actgcggcac ggaagccttt ctcttccagt acgcgtaccg
    10561 cttcaatggt ggtgcctccc ggtgagcaga ccatatcttt cagtgccccc ggatgttctc
    10621 ccgtttccag caccattttt gcggaaccca ttaccgcctg agcggcaaat ttatacgcct
    10681 gggcgcgtgg catcccgccc agcacggcgg cgtcggccat cgcttcgata aacataaata
    10741 cgtaggctgg cgaagaaccg ctcacaccga ctaccgggtg gatcatcggc tcagcaatta
    10801 cttccgcttc gccaaagcag cggaaaatat tcagcacatc agcggtatct tctggggtta
    10861 ccagcgcgtt tggcgttacg gaggtcatcc cggcattaac cagcgcggga gtgttcggca
    10921 tggcgcggat aattttccgg tcatggccca gcgcgcgggc aagctggtcg agcgtgacac
    10981 ctgcagcaat agaaacgacc agagagtctt tattcaggct ggaggtgatt tcgctaagca
    11041 ctttaatcat gatgccaggt ttaacggcag caaaaatgat gtcggcgatt tgcgccactt
    11101 cttgcgccga ttctgcggcg ttgatgccga actggtcatg cagggcggcg actttattcg
    11161 gggagggggt gtatacccag atttgccctg gaagcacctg accgctggca atcagaccgc
    11221 cgagaatggc ttttcccata ttgccgcagc caataaaacc gattttcttt tccattgcct
    11281 cactcctgcc gtgaaattca ttgttttgat aatcgctggc agaagcataa acagaactat
    11341 gccggaaggc aaaagcgcga cacaatagag gattacccaa caaaggatga ctttatgaca
    11401 atttgggtgg atgctgacgc gtgtcccaat gtaattaaag agattttgta tcgcgcggcg
    11461 gaacgtatgc agatgccgct ggtactggta gcaaaccaga gtttacgcgt gccgccatcg
    11521 cgatttattc gtacgctgcg cgtcgcggca ggtttcgacg ttgccgataa cgaaattgtc
    11581 cggcagtgtg aagcgggcga tttggtgatc accgcagata tacctttggc tgctgaagcc
    11641 atcgagaaag gcgcagcggc gcttaatccg cgcggcgaac gttacacgcc agcgaccatt
    11701 cgtgagcgcc tgacgatgcg cgattttatg gataccttac gtgccagtgg gatccagacc
    11761 ggcggaccag atagcctttc acaacgtgac cgccaggcct ttgccgcgga gctggagaag
    11821 tggtggctgg aagtgcaacg tagtcgtggc taaatgtaat ttattattta cacttcattc
    11881 ttgaatattt attggtatag taagggatgt attgagattt tcactttaag tggaattttt
    11941 tctttacaat cgaaattgta ctagtttgat ggaatgatcg ctattctcat gacaccggct
    12001 ttcgccgcat tgcgacctat tggggaaaac ccacgatgac acaacctctt tttctgatcg
    12061 ggcctcgggg ctgtggtaaa acaacggtcg gaatggccct tgccgattcg cttaaccgtc
    12121 ggtttgtcga taccgatcag tggttgcaat cacagctcaa tatgacggtc gcggagatcg
    12181 tcgaaaggga agagtgggcg ggatttcgcg ccagagaaac ggcggcgctg gaagcggtaa
    12241 ctgcgccatc cacagttatc gctacaggcg gcggcattat tctgacggaa tttaatcgtc
    12301 acttcatgca aaataacggg atcgtggttt atttgtgtgc gccagtatca gtcctggtta
    12361 accgactgca agctgcaccg gaagaagatt tacggccaac cttaacggga aaaccgctga
    12421 gcgaagaagt tcaggaagtg ctggaagaac gcgatgcgct atatcgcgaa gttgcgcata
    12481 ttatcatcga cgcaacaaac gaacccagcc aggtgatttc tgaaattcgt agcgccctgg
    12541 cacagacgat caattgttga ttttagagcg cctatactta acgttcattc cgtgaaataa
    12601 ggaagaacga tgccaacgaa accgccttat cctcgtgaag catatatagt gacgattgaa
    12661 aaaggaaagc caggacagac ggtaacctgg taccaactca gagccgatca tcctaaacca
    12721 gactcgttga tcagtgaaca tccgaccgct caggaagcga tggatgcgaa aaaacgctat
    12781 gaggaccctg acaaagagtg accgcatcag actgctcgga agggattctg agtgccacta
    12841 caagggatct gcgtcacatt tttcataatt catgtttttc taataattag aatattaaac
    12901 aataacaatc cattactgga atcatttgga atctttacat tatgccgtgc acgtctgctg
    12961 ctacgctttt tgtcatttgt agcacaagta agtgtcagca gtggtgcttc acacttgccc
    13021 ggtaattaac gacgaaagaa aagtaaggtg gatgaacaat gagtgcgtcg ttggcgatcc
    13081 tgaccatcgg cattgtacct atgcaggagg ttttgccgct cctgacggaa tacattgacg
    13141 aagataatat ttcccatcat agcctgctgg ggaagttaag tcgtgaagaa gtgatggcgg
    13201 agtacgcgcc agaagcaggc gaagacacca ttctcacatt attaaatgac aaccagctgg
    13261 cccatgtttc gcgtcgtaaa gtggagcgag acctgcaagg tgtggttgaa gtgctcgata
    13321 atcagggtta tgacgtcatt ttattaatga gtacagcaaa cattagtagt atgactgcgc
    13381 gtaatacgat ctttcttgag ccgtcgcgaa tattgcctcc actggtttcc tctattgttg
    13441 aagatcatca ggtgggggtt atcgttccgg ttgaggagat gctgcccgtt caggcgcaaa
    13501 aatggcaaat tttgcagaaa tcgccggtat tttcattggg taaccccatt catgattcag
    13561 aacaaaaaat cattgatgca gggaaagaat tactggcaaa aggggctgat gtcatcatgc
    13621 tggattgttt aggatttcac caacgtcatc gcgatttact gcaaaaacag ctcgatgttc
    13681 ctgtcttgct gtctaacgta ttgattgcac ggctggctgc ggaattactg gtgtaatttt
    13741 gcgtgacagc cagcgcctct ggcccctata gtgaagtaga tgttcaacta ccagacaggg
    13801 ccagtttatg cttcaaagta atgagtactt ttccggcaaa gtgaaatcaa tcggcttttc
    13861 cagcagcagc actggtcgcg ccagcgtggg tgttatggtt gaaggcgaat acaccttcag
    13921 caccgctgag ccggaagaga tgacggtaat cagtggcgcg ctgaatgtgt tactgcctga
    13981 tgcgaccgac tggcaggtgt atgaagccgg ttcggtgttt aatgttcccg gtcacagtga
    14041 gtttcatctg caagttgccg aacccacctc ttatctgtgc cgctatctgt aattcctcgc
    14101 cttccccttg aacgggaggg catttttctg aaatatcctc tctttaaccc ataataatat
    14161 ttcctttgct gcgatttttt caatttccga tatattcata attcatcaag gttgatataa
    14221 atatcagtga agatctccag atattgttgc ggaactggct acgataaaag ataaatcaga
    14281 tgatgaatgg tggcgtgcat tgctgcaaag tcgcaatgat catttgcgcc aaacggcatt
    14341 acgcaacgca cataccccgg cgtcgttgtt aacgacattg accgagtctc ggcatcggtc
    14401 gctagctatg aataatccac agctcgctgc cgatgtgaaa acgacgtggt taaaagagga
    14461 tccatcatta ctcttatttg tcgaacaacc cgatctttcg ctgttacggg atttagtgaa
    14521 aaccggggca atgcggaaaa ttcgcagtga agcgcgtcac tggcttgagg aaaaacaatg
    14581 acacaacgtc catggagcaa gttacagcat aaaacgcata atattgctgc gctaaaaatt
    14641 attgtccgcc gtagcgaata attatatccc tggtgtggct tcgtacgccg gataagacgc
    14701 ggcaggcgtc gcatccggca ttaaaggaaa atcagcaatt aacgttgtgc ttcgccacct
    14761 aatccttcaa tcaggttttg aattaacgct gccagttcac cagtcatcag gatgaaatcg
    14821 gcatcaaaac gctgggcgaa atcttcacgg tcgatatctt cgttttgatc gcgcagctcg
    14881 tcgcaaaact tcagacgctt gagcgaacca tcgtcgcaca tcacaaactg aatgcgctgc
    14941 tgccagtcga gcgccagttt agtcaccact tttccggctt cgatgtgatt ggtgatctct
    15001 tcgctggtca gatcttgttt cttcgcgcgg atcacgccgc catcttccag caacgatttc
    15061 agctcggctt catcaagcag ctggaagccc tgtgccgcgc taccggagcg aacccattcg
    15121 gtcagcgtca gttcaatcgg gttttccatg ctcaatggta ccacaggtaa cgaccccagg
    15181 cttttacgca gcagtgccag cgtatcttcc gcttttttgg cactggcgca gtccaccata
    15241 atcaaaccgt taaccgtgtc gatccacatc attgtctggc taaaacggct gaaagcacgc
    15301 ggcaacagag agtgcagcac ttcgtctttc agcgaatctt tttcggtttt cttcagctta
    15361 cgcgcctgtt ccgcttccag tttggcgatt ttcgcttcca gcgcctgctt aatcaccgga
    15421 gacgggagga ttttttcttc tttgcgcgcg cagataacaa tttgaccatt ggcaacgtgc
    15481 gttaacgcat cgctgtgcga tcccatcgga ggaacccagc ccatcttcgc catgtcctgg
    15541 ctgccgcatg gggtaaatgc catcgaggct agctgttttt ccatctcttc tgcacgcagc
    15601 gaaatctcgc ggctaagacg gtaaaccatt aaatttttga accacagcat gataatttcc
    15661 acggccttgt tgttaaattt agcgggcatg ataacgaatt gtcggcggcc ttgcattgcc
    15721 aatccggttg tccgtctcta cgctattgat attgaaaaaa ataaggagag taccgtgcgt
    15781 ataggtatcg atttaggcgg caccaaaact gaagtgattg cactgggcga tgcaggggag
    15841 cagttgtacc gccatcgtct gcccacgccg cgtgatgatt accggcagac tattgaaacg
    15901 atcgccacgt tggttgatat ggcggagcag gcgacggggc agcgcggaac ggtaggtatg
    15961 ggcattcctg gctcaatttc gccttacacc ggtgtggtga agaatgccaa ttcaacctgg
    16021 ctcaacggtc agccattcga taaagactta agcgcgaggt tgcagcggga agtgcggctg
    16081 gcaaatgacg ctaactgtct ggcggtttca gaagcagtag atggcgcggc agcgggagcg
    16141 cagacggtat ttgccgtgat tatcggcacg ggatgcggcg cgggcgtggc attcaatggg
    16201 cgggcgcata tcagcggcaa tggcacggca ggtgagtggg gacacaatcc gctaccgtgg
    16261 atggacgaag acgaactgcg ttatcgcgag gaagtccctt gttattgcgg taaacaaggt
    16321 tgtattgaaa cctttatttc gggcacggga ttcgcgatgg attatcgtcg tttgagcgga
    16381 catgcgctga aaggcagtga aattatccgc ctggttgaag aaagcgatcc ggtagcggaa
    16441 ctggcattgc gtcgctacga gctgcggctg gcaaaatcgc tggcacatgt cgtgaatatt
    16501 ctcgatccgg atgtgattgt cctggggggg ggatgagcaa tgtagaccgt ttatatcaaa
    16561 cggttccgca gttgattaaa caatttgtct tcggcggcga atgtgaaacg ccggtgcgta
    16621 aggcgaagca cggtgattcc agcggcgtac gcggcgctgc gtggttatgg ccacaagagt
    16681 aaaaaacgta ggcaattggc gcatcatgcc tgatgcgacg cttgccgcgt cttatcaggc
    16741 ctgcaaaatg tgccagaacc gcgtagggcg gataaggcgt tcacgccgca tccggcaata
    16801 agtaatgaac accgagacta taacctaccc cagtggtttc gccagcaccg gagtatccgc
    16861 cgcttgctgg cgcttatagc gaccatacag cagcaacgac gacatcgcag caaacgaaag
    16921 cagggcggca ggcagcgcca cgtaattata tgccagcccc agcgtcagca tcataccacc
    16981 gcaatatgcg ccgacggcgc taccgaggtt aaacgctatt tgcccacctg cggcacctaa
    17041 taactctccg cctttggcgt tttgtagtaa caatatttgt agcggtgctg aaagggcaaa
    17101 taatcccgcg caacaaataa aagcaaaaat aagcgacgtt gttttcatgc cgccgcagaa
    17161 aaagaacatc agcagtgcca gtacaattat aaagtcagtc actgctgcaa tgcgcagtgg
    17221 tgaataacgt cctgaaatcc tgccacttag catatttccc agcaccatcc ctagcccaac
    17281 taacatcata ataaaggtca tcgccgtttc cgaaaaaccg gaaataaaca tcatgtatgg
    17341 ctttacgtag ctgaaccagg caaacacacc tgcgttgcca aacatggtgg cggcgaaaat
    17401 taaccacggg gccgggctgc gcaaaaagtg aaattgttcg cgcagctttc ctttcgcctc
    17461 gtcgcgaata tccggcaccc aaaaatagac cgatgccatc accgcaatat taaaaacagc
    17521 gatcaataaa aaggtgtaac gccagctaaa ttcctgactt aaatacgttc ccagcggaat
    17581 gcccagcaaa ttggcgactg tcatcccgga aaccatcccc gccacggcgg cggtgacttt
    17641 tccgggtttg ataatttttg ataacacgat cgcgccgacg ccaaaaaatg cgccatgcgg
    17701 aaagccggat accagccgac caatggcgag catcaggtaa gacgaagaga gcgtgaacat
    17761 ggcgttgcca atgacgcaca acgccaccag aaacaacaag atatgtttga gtgagtagcg
    17821 gctggaaaag agtgcgatga ttggcgcacc gaccaccact cccagtgcat aatacgagat
    17881 catatgcccg gcagcaggaa tcgaaattcc tacgttatgc gccagctccg tgagcacgcc
    17941 cataatgcca aattcggcca tccccaaacc aaacgtgccc agagccaaag ataaaatgac
    18001 ttttttcata ccaccatcac aaccaccaga acggctacca atcaccgtag ccaataaagt
    18061 gatagcttgc aggataacga ccagcaaggc caagagataa ttcgcccctc tgtattcatt
    18121 atcctgctga atagttattt cactgcaaac gtactttcca gtttgctgta gcccaggccg
    18181 ttgatctttt tcactttgat ctgcaccgga atacgctctt tcatcgcttc tacgtggcta
    18241 atcacaccga tggttttgcc actggcgttc agggcatcca gcgcatcaag ggcggtatcc
    18301 agcgtttcgc tatccagcgt gccaaaacct tcatcaagga acagcgagtc aatacgtgtt
    18361 ttatggctga ccagatccga aagcgccagc gccagcgcca gactaacgag gaaactttcg
    18421 ccgccggaaa gggtacgggt atcgcgtacc gcatctgcct gccaggtatc aacaacctcg
    18481 acttccagcg cctcgctggc tttgcgctgt aacagatagc gcccgtgcag ccgggtaagt
    18541 tgctgattag cgagatggac taaattatcc agcgtcagcc cctgggcaaa cttgcggaat
    18601 ttatcgccct ctttggaacc tattagcgaa ttcagatatc cccagtcctc aacctgctgc
    18661 gtcatttgag caatttgctg cattaaggtt tgttgttgct gacggttatc tgcatcctgc
    18721 ttcagctgct ggcgaatctc gccttgactc gtggtgtttt cacgcaactt ttggtgagtt
    18781 tgcgctaact cttgctgaat ctgctccacc gtcacagtga gagccaaccc gtcaggtcgg
    18841 tgttgttgat gctgtgccag cgtttctgct gtctgagtga ccagcgtttg cgcctgacgg
    18901 cgctggtttt ccagattctg cttgagctgt tccagctgcg ttagtgtttg ttcatccatt
    18961 agcgccgcaa ggaacgcctg ctgatcgtca aagacgctgg cctgtagcgc ggtgtcaaac
    19021 tgcgcctggg ctttttgcag actttgcgcc gccagaacat cctgttgctg taacgtctgc
    19081 tgctggctgt gtaatgcgag acattgttca tgaacctgcc gccagttatc cagcgccaca
    19141 gtttcttcgc tgtgcgggag atcatcactt tgcggcaacg tttccagaat cggcgtcagc
    19201 tgctgaatac ggttttgcag cgtggttaat tcgttctggc gttgctgcca gctctgcgct
    19261 tcttgctgac gtgtcgccaa ccagctctct tcttcatctt cctgtggcaa tgtcagtgca
    19321 taacccgcca atgccgttaa gagctgctgc tggcgttgtt caatttgctg ttgatactgg
    19381 ataatttgct gattatgcgc ggcaatctgc ccttgtaatt catgtcgttg gctgagtaac
    19441 cgcagctggc gtttgtgctc atcttgtgca tccagccacg gttgaatatc gtcctgtggc
    19501 tgcaaggtga tattgaggct ggccgtgacg gcttgccatt gttgagtaag tgcttgctca
    19561 tcttgtcgga ggctttgcgc ttcgttttca tcgcgctgaa gctgcttcgt taatgcatcc
    19621 agttgcccgc gcagcgccgc accttcttcg ccgagctttt taacttcgtt ttccagcgcc
    19681 agtaatcgag actgattaac accaggctcc agcgcctgat acgccttgac cgccgggtgg
    19741 ctggtggaac cacaaagtgg acaaggctga cccgcctgta actgtgcacg ctgggcttcc
    19801 agcgttttga tgcgcgcttc ctgctcgcaa atggttttca catcggcaag ttgctgcgtc
    19861 ttttctttat aacgctggcg catttcgtta agtgcgacat tacgttgcgt ctgttccaga
    19921 gatccattct ggatagtgac cattaactgc gccagacgtt tttgttgggg aacaatctgc
    19981 ccatgcagcg cgaccaggcg ctgacgcagt gggcgttgct cagcatgttg cgccagggcg
    20041 gtagcaactt catcggcggt taacgtcaac gtgatcgccg caagcgcatt aagtttttgc
    20101 tcagcatggg ttaactgttg ctgccattgc cgcagatgct cgcgatcgct ggtttgttgg
    20161 gagaactgcg cacgccaacc cgccagttcg ttgttccact gacggaagcg gtcgtgttcc
    20221 tgtaaccagg tattcaggct ttgttgctgc tgctgtaatt ctgctgactg cttcgccgcg
    20281 tggtggcgaa tgctcgcgcg aagcgccatt gtgctctgta agcgagtatt tacttcttca
    20341 atctgctggc gagtatgcgc cagcgccgcg ctgtgttctg cgatgcgttc ccagtgcgga
    20401 cgaagatttc gtgccggttg tgccagactg agcgccgcca gttgaggttg cgctttttct
    20461 tcttcggcta acgcctgttg caaggcctgc tgacggcggc tggcttcttg ctgcaattcg
    20521 tccagacgcg ttaaccagtt tagtgattgt tgttcttgct gctgcgcggt aagtaactgt
    20581 ttttcttcgt cagtaagtac ctgcaaactc gctgtcagcg attgcacttg ttccggcgtg
    20641 agcaacgcga cgccgctggc ctgcgcttgc agcttctcca gctctgtgcg ggccgatttg
    20701 tgctgctcaa aaaccatcgc cgagatttgc ccgtagattt cagtgccggt taactcctcg
    20761 agcaattccg cgcgttcttt gggtttggca ttcaggaagg cagcaaattg cccctgcgaa
    20821 agcagcatcg aacgggtgaa gcgcccgtaa tccagcccgg ttaacgtcgc tgtcagttcc
    20881 agcttatctt tcactttgtc ggcgagaatt ttgccgtcgg cgcagcgcgc cagctctacg
    20941 cgtggcacct gcaaattacc gtcgggttgg ttacgcgccc gattctggct ccagaatgca
    21001 cggtacgctt cacctttcac ttcaaactcc acctccgcca gacattcggc ggtatcgcgg
    21061 gtcatgagat cattttgcga ttgtgaaacg ttagagagac gcggagtttc gtgatacagc
    21121 gccagacaaa tggcgtccag cagggtggtt ttccccgcac cggttgggcc ggtaatggca
    21181 aacagcccgt tgctggcgaa cggctcgcgg gtgaaatcaa tcttccattc gccttttaat
    21241 gagttcaggt ttttcaggcg caggctgaga attttcatgc ttcgtgttct ccggcgaggg
    21301 tatgcaacgt cgtggtgaaa agatgctgca gacgttgctg ctgcgattca tccagttctt
    21361 ccagtgccag acggcgattg aacacctctt cgacgctgag ttcgctgagg gtttcacgct
    21421 gttggctggc taatacacgc tcgcgctgtt cacgactccg acgtaccagc aatacttcga
    21481 caggcaatga ttcggctaat gcctggattt tgcgctgaat atcatgcaga tactcatcag
    21541 tagtgatttc gatatccagc cagacaggtg gctcctgcga tacatcgcgc cactgttcca
    21601 gctgtgcggt aatcgacgcc agatcgcctt tcagcaccgc catgggttga gttaccggta
    21661 cgttcaggtt ttccacgctc tctaatttgc cgtttgaaaa tgtcaccaga tggacatatt
    21721 tactcttacc gcattcatca aaactcagtg gaatggggga accgcaatag cgaacatgtt
    21781 ccatgccgcc aataatctgt gcgcggtgaa tatgcccgag cgcgatgtag tcggctggtg
    21841 gaaagttttg tgccggaaac gcgtccagcg tgccaatata aatgtcacgc acggcgtcac
    21901 ttttactggc acccacggtc gttaaatgtc ccgtggcgat gatgggcaga ggctgatcgc
    21961 cgcgcagttt gcaggcatcg gcatagtgtt gttggtaata atcggtaatc gctgccagta
    22021 aatgctgctg tttttcaata ccgttaagcc ccgcctggct ggaaataatg tcacgcgggc
    22081 gtaaaaacgg aatggggcac agcactgcgc ctggcgtccc gtcgcgacga ggcaagattt
    22141 gcggcgcatg tccggcgctg gcgaccacgg ttgtattgag gaacgccatg atatcgcgcg
    22201 attcattcag cgtggcgacc gagtcatggt ttcctgccag taccaccaga tgacagccag
    22261 tttgctgtaa attgacaaca aaacggttgt ataacgtgcg ggcgtaactg ggcggcgagc
    22321 cggtatcgaa aacatcacca gcaacaataa tcgcatccac ctgatgggtt tgtgctgtct
    22381 ccagcagcca gtcaagaaaa gcctgatgtt cagcttcgcg gcttttactg tagaagttct
    22441 ggccgagatg ccagtctgag gtgtgaagga tgcgcataac ggttccctgg cgaaaaagca
    22501 tggtcgcgat tatacccaaa cagatgtgcc atttgctttt ttctgcgcca cggaaatcaa
    22561 taacctgaag atatgtgcga cgagcttttc ataaatctgt cataaatctg acgcataatg
    22621 acgtcgcatt aatgatcgca acctatttat tacaacaggg caaatcatgg cgagacgtat
    22681 tctggtcgta gaagatgaag ctccaattcg cgaaatggtc tgcttcgtgc tcgaacaaaa
    22741 tggctttcag ccggtcgaag cggaagatta tgacagtgct gtgaatcaac tgaatgaacc
    22801 ctggccggat ttaattctcc ttgactggat gttacctggc ggctccggta tccagttcat
    22861 caaacacctc aagcgcgagt cgatgacccg ggatattcca gtggtgatgt tgaccgccag
    22921 aggggaagaa gaagatcgcg tgcgcggcct tgaaaccggc gcggatgact atatcaccaa
    22981 gccgttttcg ccgaaggagc tggtggcgcg aatcaaagcg gtaatgcgcc gtatttcgcc
    23041 aatggcggtg gaagaggtga ttgagatgca gggattaagt ctcgacccga catctcaccg
    23101 agtgatggcg ggcgaagagc cgctggagat ggggccgaca gaatttaaac tgctgcactt
    23161 ttttatgacg catcctgagc gcgtgtacag ccgcgagcag ctgttaaacc acgtctgggg
    23221 aactaacgtg tatgtggaag accgcacggt cgatgtccac attcgtcgcc tgcgtaaagc
    23281 actggagccc ggcgggcatg accgcatggt gcagaccgtg cgcggtacag gatatcgttt
    23341 ttcaacccgc ttttaacgcc ttgctcatcg gacgcagagc agggcttatg atttcttaac
    23401 tggagtatct tacgtgctgg aacggctgtc gtggaaaagg ctggtgctgg agctgctact
    23461 ttgttgcctc ccggctttca tcctgggtgc attttttggt tacctgccct ggtttttgct
    23521 ggcatcggta acaggactgc ttatctggca tttctggaat ttattgcgcc tttcatggtg
    23581 gttgtgggtg gatcgcagta tgaccccgcc accggggcgt ggtagctggg aaccgctact
    23641 atacggctta caccagatgc agctgcgaaa taaaaaacgc cgccgtgaac tgggcaatct
    23701 gattaaacgc tttcgtagcg gcgcggagtc gctgcccgac gcggtggtgc tgaccacgga
    23761 agagggcggt attttctggt gtaacggtct ggcgcaacaa attcttggtt tgcgctggcc
    23821 ggaagataac gggcagaaca tccttaacct actgcgttac ccggagttta cgcaatatct
    23881 gaaaacgcgt gatttttctc gcccgctcaa tctggtgctc aacaccgggc ggcatctgga
    23941 aattcgcgtc atgccttata cccacaaaca gttgctgatg gtggcgcgtg atgtcacgca
    24001 aatgcatcaa ctggaagggg cgcggcgtaa cttttttgcc aacgtgagcc atgagttacg
    24061 tacgccattg accgtgttac agggttacct ggagatgatg gatgagcagc cgctggaagg
    24121 cgcggtacgc gaaaaagcgt tgcacaccat gcgcgagcag acccagcgga tggaagggct
    24181 ggtgaagcag ttgctaacgc tgtcgaaaat tgaagccgcg ccgacgcaat tgctcaatga
    24241 aaaggttgat gtgccgatga tgctgcgcgt tgttgagcgc gaggctcaga ctctgagtca
    24301 gaaaaaacag acatttacct ttgagataga taacggcctc aaagtgtctg gcaacgaaga
    24361 tcagctacgc agtgcgattt cgaacctggt ctataacgcc gtgaatcata ctccagaagg
    24421 cacgcatatc accgtacgct ggcagcgagt gccgcacggt gccgaattta gcgttgaaga
    24481 taacggaccg ggcattgcac cggagcatat tccgcgcctg accgagcgtt tttatcgcgt
    24541 tgataaagcg cgttcccggc aaaccggcgg tagcggatta gggttagcga tcgtgaaaca
    24601 tgctgtgaat catcacgaaa gtcgcctgaa tattgagagt acagtaggaa aaggaacacg
    24661 tttcagtttt gttatcccgg aacgtttaat tgccaaaaac agcgattaat ccgcctttgt
    24721 catcttttat tgccataagc cagtcgatgc tggcttattt tctttgcagt caaaatacgg
    24781 gcgttagatt ttacaacggt tggtgatttt ttgttcgcat gattagccat gtctttttca
    24841 cggaaatagt gttttatact ggttggtgat ttcttatcgc tatatacctc tggtttttag
    24901 atccctcctt gctttaaaac gttataagcg tttaaattgc gcttcaggtg ctgtcatact
    24961 gactgcatta acgcggtaaa tcgaaaaact attcttcgcc gcgccaggtt gggagtattt
    25021 cccgctaaaa ttgtttaaat ataccgctgt atcatcccca gggattggca caaaaattta
    25081 acgttacaac accacatcca caggcagtat gatttatgac ccatcaatta agatcgcgcg
    25141 atatcatcgc tctgggcttt atgacatttg cgttgttcgt cggcgcaggt aacattattt
    25201 tccctccaat ggtcggcttg caggcaggcg aacacgtctg gactgcggca ttcggcttcc
    25261 tcattactgc cgttggcctg ccggtattaa cggtagtggc gctggcaaaa gttggcggcg
    25321 gtgttgacag cctcagcacg ccaatcggta aagtcgctgg cgtgctgctg gcaacggttt
    25381 gttacttggc ggtggggccg cttttcgcta cgccgcgtac agctaccgtt tcctttgaag
    25441 tggggattgc gccgctgacg ggtgattccg cgctgccgct gtttatctac agcctggtct
    25501 atttcgctat cgttattctg gtttcgctct atccgggcaa gctgctggat accgtgggca
    25561 acttccttgc gccgctgaaa attatcgcgc tggtcatcct gtctgttgcc gctattgtct
    25621 ggccggcggg ttctatcagc acggcgactg aggcttatca aaacgctgcg ttttctaacg
    25681 gcttcgttaa cggctatctg accatggata cgctgggcgc aatggtgttt ggtatcgtta
    25741 ttgttaacgc ggcgcgttct cgtggcgtta ccgaagcgcg tctgctgacc cgttataccg
    25801 tctgggctgg cctgatggcg ggtgttggtc tgactctgct gtacctggcg ctgttccgtc
    25861 tgggttcaga cagcgcgtcg ctggtcgatc agtctgcaaa cggcgctgct attctgcatg
    25921 cttacgttca gcacacattt ggcggcggcg gtagcttcct gctggcggcg ttaatcttca
    25981 tcgcctgcct ggtaacggca gttggcctga cctgtgcttg tgcagaattc tttgcccagt
    26041 acgtaccgct ctcttatcgt acgctggtgt ttatcctcgg cggcttctcg atggtggtgt
    26101 ctaacctcgg cttaagccag ctgatccaga tctccgtacc ggtgctgacc gctatttatc
    26161 cgccgtgtat cgcactggtt gtattaagtt ttacacgctc atggtggcat aattcgtccc
    26221 gcgtgattgc cccgccgatg tttatcagcc tgctttttgg tattctcgac gggatcaaag
    26281 catctgcatt cagcgatatc ttaccgtcct gggcgcagcg tttaccgctg gccgaacaag
    26341 gcctggcgtg gttaatgcca acagtggtga tggtggttct ggccattatc tgggatcgcg
    26401 cggcaggtcg tcaggtgacc tccagcgctc actaaatcac tgaacatttg ttttaaccac
    26461 ggggctgcga tgccccgtgg ttttttattg tgttgatggg ttaggaattg atggaaagta
    26521 agaacaagct aaagcgtggg ctaagtaccc gccacatacg ctttatggca ctgggttcag
    26581 caattggcac cgggctgttt tacggttcgg cagacgccat caaaatggcc ggtccgagcg
    26641 tgttgttggc ctatattatc ggtggtatcg cggcgtatat cattatgcgt gcgctggggg
    26701 aaatgtcggt acataacccg gccgccagct ctttctcgcg ttatgcgcag gaaaacctcg
    26761 gcccgctggc aggttacatt accggctgga cctactgctt tgaaatccta attgtcgcca
    26821 tcgccgatgt gaccgctttt ggtatctata tgggtgtctg gttcccgacg gtgccgcact
    26881 ggatttgggt actgagcgtg gtgctgatca tttgcgccgt aaacctgatg agcgtgaagg
    26941 tattcggtga gctggaattc tggttctcgt tctttaaagt cgccaccatc atcatcatga
    27001 ttgtcgccgg tttcggcatc atcatctggg ggattggcaa cggcgggcaa ccgaccggta
    27061 ttcataacct gtggagcaac ggcggcttct tcagtaacgg ctggcttggc atggtaatgt
    27121 cgttgcaaat ggtgatgttt gcttacggtg ggatcgaaat tatcgggatt accgccggtg
    27181 aagcgaaaga tcctgagaaa tcgattccgc gtgcgattaa ctccgtgccg atgcgtattc
    27241 tggtgttcta cgtcggtacg ctgttcgtca ttatgtctat ctacccgtgg aatcaggttg
    27301 gcactgccgg tagcccgttc gtgctgacgt tccagcatat gggcattacc tttgccgcca
    27361 gcattcttaa ctttgttgtg ctgaccgctt cgctgtcggc aattaacagt gacgtatttg
    27421 gcgtaggccg tatgctccac ggtatggcag agcagggcag cgcaccgaaa attttcagca
    27481 aaacgtcgcg tcgcggtatt ccgtgggtta cggtgctggt gatgactacc gcgctgctgt
    27541 ttgcggtgta tctgaactac atcatgccgg aaaacgtctt cctggtgatc gcttcgctgg
    27601 caaccttcgc cacggtatgg gtgtggatta tgatcctgct gtcgcaaatc gccttccgtc
    27661 gccgtttgcc gccagaagaa gttaaggcgc tgaaatttaa agtgccgggt ggggtagcaa
    27721 cgaccatcgg cgggctgatt ttcctgctct ttattatcgg gttgattggt tatcacccgg
    27781 atacgcgtat ctcgctgtat gtcggtttcg cgtggattgt tgtgctgttg attggctgga
    27841 tgtttaagcg tcgccacgat cgtcagctgg ctgaaaacca gtaatccttg cgttctgtaa
    27901 gccggttcag gaggaaatcc tgatccggct attccgaaag ttatccgccc ccgtcctcct
    27961 cccccaaata tccttcagat gatgagtgat cctgcattag gctatggcaa ggtgatcaga
    28021 ttttcatcac aggggaatta tgatgttaaa tgcatggcac ctgccggtgc ccccatttgt
    28081 taaacaaagc aaagatcaac tgctcattac actgtggctg acgggcgaag acccaccgca
    28141 gcgcattatg ctgcgtacag aacacgataa cgaagaaatg tcagtaccaa tgcataagca
    28201 gcgcagtcag ccgcagccag gcgtcaccgc agggcttcag ccgaatgccg ccggcacgac
    28261 tggagcagtt tgccgtcgat gtaccggata tcggcccaca atgggctgcg gatcagattt
    28321 tttatcagat cttccctgat cgttttgcgc gtagtcttcc tcgtgaagct gaacaggatc
    28381 atgtctatta ccatcatgca gccggacaag agatcatctt gcgtgactgg gatgaaccgg
    28441 tcacggcgca agcgggcgga tcaacgttct atggcggcga tctggacggg ataagcgaaa
    28501 aactgccgta tctgaaaaag cttggcgtga cagcgctgta tctcaatccg gtgtttaaag
    28561 ctcccagcgt acatcaatac gataccgagg attatcgcca tgtcgatccg cagtttggcg
    28621 gtgatggggc gttgctgcgt ttgcgacaca atacgcagca gctgggaatg cggctggtgc
    28681 tggacggcgt gtttaaccac agtggcgatt cccatgcctg gtttgacagg cacaatcgtg
    28741 gcacgggggg agcttgttac aaccctgaat cgccctggcg cgactggtac tcgtttagtg
    28801 atgatggcac ggcgctcgac tggcttggct atgccagctt gccgaagctg gattatcagt
    28861 cggaaagtct ggtgaatgaa atttatcgcg gggaagacag tattgtccgc cattggctga
    28921 cagcgccgtg gagtatggac ggctggcggc tggatgtggt gcatatgctg ggggaggcgg
    28981 gtggggcgcg caataatatg cagcacgttg ctgggatcac cgaagcggcg aaagaaaccc
    29041 agccggaagc gtatattgtc ggcgaacatt ttggcgatgc acggcaatgg ttacaggccg
    29101 atgtggaaga tgccgccatg aactatcgtg gcttcacatt cccgttgtgg ggatttcttg
    29161 ccaataccga tatctcttac gatccgcagc aaattgatgc ccaaacctgt atggcctgga
    29221 tggataatta ccgcgcaggg ctttctcatc aacaacaatt acgtatgttt aatcagctcg
    29281 acagccacga tactgcgcga tttaaaacgc tgctcggtcg ggatattgcg cgcctgccgc
    29341 tggcggtggt ctggctgttc acctggcctg gtgtaccgtg catttattac ggtgatgaag
    29401 tgggactgga tggtaaaaac gatccgtttt gccgtaaacc gttcccctgg caggtggaaa
    29461 agcaggatac ggcgttattc gcgctgtacc ggcgaatgat tgtgctgcgt aagaaaagtc
    29521 aggcgctgcg tcgtggcggc tgtcaggtgc tgtatgcgga agataacgta gtggtatttg
    29581 tccgcgtgct gaatcagcaa cgtgtactgg tggcaatcaa ccgtggcgag gcctgtgaag
    29641 tggtgctacc cgcgtcaccg tttctcaatg ccgtgcaatg gcaatgcaaa gaagggcatg
    29701 ggcaactgac tgacgggatt ctggctttgc ctgccatttc ggctacggta tggatgaact
    29761 aacgttttat aacgccttgt gtgacgcctg cgccatcatc cgcggataaa actgccagaa
    29821 gcgggttccg agggcggtat aatgggcgtt taaatcgtac caggagtcac gcagggcatc
    29881 cagacgtggg cgacggcttg ccatgccgtt taacacgttc tggatgaaat ccatatcgcg
    29941 atagcgcacc agccactgct ctgaccacaa gtaattgttt agattgataa aacgtggcgg
    30001 tgagtccggc aaaatcgtca tcacttgctt gcgggcataa cagataaatt cctgtagcgg
    30061 aaagtccggc gacagctgcg accagtggcg ggaaagaaag tgatcccaca tgacatccag
    30121 cgtaataggc gcaacgcggc gcgtttcacg acgaaaccac tcccgtgctt cgcggacttc
    30181 cggcagattg tcagtcaata cgtcgatacg tcgatgcata tgaatgccag ccacgacgtc
    30241 gggcggaaaa ctttcttcag gatttccgcg tacgaaatca gccagtaaat tgccggaaag
    30301 cgagctttcc gcgagatggg ctaaatgcag gtgagctaaa aaattcatcg attatattct
    30361 atccaaaggg gggtaaaggt tgcagggaga gcgccccggc actagactac ccgcctctta
    30421 ttttagtctg agtcagtgtc atgcgcgtta ccgatttctt ctttgaattg cccgaatccc
    30481 tgattgccca ctaccccatg cctgaacgca gtagctgtcg tttactgtcg ctggacgggc
    30541 ctacgggcgc gctgacgcac ggtactttca ccgatttact cgataagctc aaccccggcg
    30601 atcttctggt ttttaataat actcgcgtga tcccggcgcg cctgtttggg cgtaaagcca
    30661 gcggcggcaa gattgaagtg ctggttgagc ggatgctcga cgacaaacgc attcttgcgc
    30721 atattcgcgc ctcgaaagcg ccaaaacctg gcgcagaact gctgctgggc gatgacgaaa
    30781 gtattaacgc aacaatgacc gcgcgccacg gcgcactgtt tgaagtcgaa ttcaatgatg
    30841 atcgttcggt actggatatc ctcaacagta tcgggcatat gccgctgccg ccgtatatcg
    30901 accgtccgga cgaagacgct gaccgcgaac tttatcaaac cgtttatagc gaaaaaccgg
    30961 gcgcggttgc agccccgacc gctggtctgc attttgacga gcctttgctg gaaaaattgc
    31021 gcgccaaagg cgtggagatg gcgtttgtga cgttgcacgt tggtgcgggc accttccagc
    31081 cggtgcgcgt cgacaccatt gaagatcaca tcatgcactc ggaatacgct gaagtaccgc
    31141 aggatgtggt agacgcggta ctggcggcga aagcgcgcgg taaccgggtg attgcggttg
    31201 gcaccacttc agtacgttcg ctggaaagcg cggctcaggc agcgaaaaac gatctcattg
    31261 aaccgttctt cgacgatacc caaatcttta tctatccggg cttccagtac aaagtggtcg
    31321 atgcgctggt gacgaacttc cacttgccag agtcgacgct gattatgctg gtttcggcct
    31381 ttgccggtta tcaacacacc atgaacgcct ataaagcagc ggtagaagag aaatatcgct
    31441 tttttagtta cggtgatgcg atgtttatta cgtacaatcc gcaggcaatt aatgagcgcg
    31501 tcggggagta attccgcggc gctggtttaa aacgttggac tgtttttctg acgtagtgga
    31561 gaaaaaatga aatttgaact ggacaccacc gacggtcgcg cacgccgtgg ccgcctggtc
    31621 tttgatcgtg gcgtagtgga aacgccttgt tttatgcctg ttggcaccta cggcaccgta
    31681 aaagggatga cgccggaaga agttgaagcc actggcgcgc aaattatcct cggcaacacc
    31741 ttccacctgt ggctgcgccc gggccaggaa atcatgaaac tgcacggcga tctgcacgat
    31801 tttatgcagt ggaaggggcc gatcctcacc gactccgggg gcttccaggt cttcagcctt
    31861 ggcgatattc gtaaaatcac cgaacagggc gtgcacttcc gtaacccgat caacggcgat
    31921 ccgattttcc tcgatcctga aaaatcaatg gagattcagt acgatcttgg ttcggatatc
    31981 gtcatgatct ttgatgagtg tacgccgtat cctgctgact gggattacgc aaaacgctcc
    32041 atggagatgt ctctgcgttg ggcgaagcgt agccgtgagc gttttgacag tctcggaaac
    32101 aaaaatgcgc tgtttggtat cattcagggc agcgtttacg aagatttacg tgatatttct
    32161 gttaaaggtc tggtagatat cggttttgat ggctacgctg tcggcggtct ggctgtgggt
    32221 gagccgaaag cagatatgca ccgcattctg gagcatgtat gcccgcaaat tccggcagac
    32281 aaaccgcgtt acctgatggg cgttggtaaa ccagaagacc tggttgaagg cgtacgtcgt
    32341 ggtatcgata tgtttgactg cgtaatgcca acccgcaacg cccgaaatgg tcatttgttc
    32401 gtgaccgatg gcgtggtgaa aatccgcaat gcgaagtata agagcgatac tggcccactc
    32461 gatcctgagt gtgattgcta cacctgtcgc aattattcac gcgcttactt gcatcatctt
    32521 gaccgttgca acgaaatatt aggcgcgcga ctcaacacca ttcataacct tcgttactac
    32581 cagcgtttga tggcgggttt acgcaaggct attgaagagg gtaaattaga gagcttcgta
    32641 actgattttt accagcgtca ggggcgagaa gtaccacctt tgaacgttga ttaatattaa
    32701 taatgaggga aatttaatga gcttttttat ttctgatgcg gtagcggcaa cgggtgcacc
    32761 ggcgcaaggt agcccgatgt ctttgatttt gatgctggtg gtattcggtc tgattttcta
    32821 tttcatgatc ctgcgtccac agcagaagcg caccaaagaa cacaaaaagc tgatggactc
    32881 cattgccaaa ggtgatgaag ttctgacgaa cggtggcctg gttggtcgcg taaccaaagt
    32941 agcggaaaac ggctacattg ctatcgcgct gaatgacacc actgaagtag ttattaaacg
    33001 tgacttcgta gctgccgtcc tgccgaaagg caccatgaag gcgctgtaat taaaattttt
    33061 ccctaaggga attgccgtgt taaaccgtta tcctttgtgg aagtacgtca tgctgatcgt
    33121 ggtgattgtc atcggtctgc tgtatgcgct tcccaacctg tttggtgagg atccggctgt
    33181 tcagatcact ggtgcgcgcg gagtcgccgc cagtgagcaa acgctgatcc aggtccagaa
    33241 aacgttacaa gaagaaaaaa taactgctaa gtctgtggca ctggaagagg gcgctattct
    33301 tgcgcgcttc gactccactg acacccagct gcgcgctcgt gaagcattaa tgggcgttat
    33361 gggtgacaaa tacgtcgtgg cgcttaacct tgccccggca acgccgcgct ggctggcagc
    33421 tattcacgct gagccgatga agctcggcct tgacctgcgt ggcggcgttc acttcctgat
    33481 ggaagtggat atggacaccg cgcttggcaa actccaggaa caaaatatcg atagcctgcg
    33541 cagcgatctg cgtgaaaagg gcatcccgta taccaccgtt cgtaaagaaa acaactacgg
    33601 cctgagcatt actttccgcg atgctaaagc tcgtgatgaa gccattgcgt atctgagcaa
    33661 gcgccatccg gacctggtga ttagtagcca gggcagcaac cagctgcgtg cggtaatgag
    33721 cgatgctcgt ctgagtgaag cgcgtgaata tgcggtgcag cagaacatca atatcctgcg
    33781 taaccgtgta aaccaacttg gcgtagcgga gccggtggtt cagcgtcagg gtgctgaccg
    33841 tatcgttgtt gaactgccag gtattcagga cactgcgcgt gcgaaagaga ttctgggtgc
    33901 gacggcaacg ctggaattcc gtctggtaaa caccaacgtt gaccaggccg ctgcggcatc
    33961 cggtcgcgta ccgggcgact ctgaagtgaa acagacccgc gaaggtcagc cagttgtgct
    34021 gtacaaacgc gtaattctga ccggtgacca tatcaccgac tccacttcca gccaggacga
    34081 atacaaccaa ccgcaggtta acatctcgct cgatagcgct ggtggtaaca tcatgtctaa
    34141 cttcactaag gacaacatcg gcaaaccgat ggcaaccctg tttgtggagt acaaagacag
    34201 cggtaagaaa gatgcaaatg gtcgtgcggt tctggtgaaa caggaagagg tgattaacat
    34261 cgccaacatc cagtctcgtc tgggtaacag cttccgtatc accggcatca acaacccgaa
    34321 cgaagcccgt cagctgtcac tgctgctgcg tgccggtgcg ttgatcgcgc cgattcagat
    34381 tgttgaagaa cgtaccattg gcccaaccct gggtatgcag aacattgaac aggggctgga
    34441 ggcttgcctt gccggtctgc tggtttctat tctgttcatg atcatcttct ataagaagtt
    34501 tggtctgatt gcgaccagtg ctctgattgc caacttgatc ttaatcgtcg gcattatgtc
    34561 gctgttgcca ggcgcaacgc tgagtatgcc aggtatcgcg ggtatcgtct taacccttgc
    34621 ggtggcggtc gatgcgaacg tactgatcaa cgaacgtatt aaagaagagt tgagcaacgg
    34681 acgtactgtt caacaggcaa ttgatgaagg ttatcgtggc gcattcagtt ctatcttcga
    34741 tgcgaacatc accacgctga ttaaagtcat catcctgtac gcagtgggta ccggggcaat
    34801 taaagggttc gcgattacta ccggtatcgg tgtggcgacg tcgatgttta ccgcgattgt
    34861 cggtacgcgt gccatcgtaa acctgctata tggcggcaag cgcgtcaaga agctgtcaat
    34921 ctgaggagtg cgatgtggca caggaatata ctgttgaaca actaaaccac ggccgtaaag
    34981 tctatgactt tatgcgctgg gactactggg ctttcggcat ctctggtctg ctgttaatcg
    35041 ccgctatcgt tattatgggc gtgcgcggct ttaactgggg gctggatttc accggtggta
    35101 cggttatcga aattacgctc gaaaaaccgg ctgaaattga cgtaatgcgt gatgcattgc
    35161 aaaaagccgg ttttgaagag ccaatgctgc aaaactttgg tagcagccac gacatcatgg
    35221 tccgtatgcc gcctgctgaa ggcgaaaccg gcggtcaggt gctgggcagc caggttctga
    35281 aggtgattaa cgaatccacc aatcagaatg cagcagtgaa gcgtattgag ttcgtcggtc
    35341 cgagcgtggg ggcagacctt acgcaaaccg gtgcgatggc gttgatggcg gcgctgctgt
    35401 ctatccttgt gtacgtaggt tttcgctttg agtggcgact ggcggcaggg gttgttattg
    35461 cgctggcgca cgacgttatc attacgctgg gtattttgtc gttattccat atcgagattg
    35521 acctgaccat tgtggcatcg ttgatgtcgg ttatcggtta ctcgcttaac gacagtatcg
    35581 tggtatcgga ccgtattcgt gaaaacttcc gcaagatccg tcgcggtacg ccttacgaaa
    35641 tctttaacgt gtccttgacc cagacgctgc accgtacctt gatcacatcc ggtactacct
    35701 tgatggttat cctgatgctg tacctcttcg gtggtccggt actggaaggc ttctcgctga
    35761 ccatgcttat cggtgtttcc atcggtactg catcttccat ctatgtggca tctgcgttgg
    35821 ctctgaaact gggtatgaag cgcgaacaca tgttgcagca gaaagtggaa aaagaagggg
    35881 cggatcagcc gtcaattctg ccgtaatcaa gttcccgttg atgttgaaaa tcccggtcag
    35941 aagatcggga ttttttttga tgtatggaga ttgcgaaaat ccccgcatct tgggaaactg
    36001 cgcgtaaccc tacatttcat ccaggtaact cttcatggct atcatcccaa aaaactatgc
    36061 gcggttagaa agcggctatc gcgaaaaagc attaaaaata tatccgtggg tctgcggtcg
    36121 ctgttcccgc gagtttgttt attccaacct gcgtgaactt accgttcacc acattgatca
    36181 cgaccatacc aataacccgg aagatggcag taactgggaa ttgctttgtc tctattgcca
    36241 cgatcatgag cattcgaaat ataccgaagc ggatcagtat ggtacgaccg ttatcgcagg
    36301 ggaagatgcg cagaaagatg tcggtgaagc gaagtacaac ccattcgctg acctgaaagc
    36361 gatgatgaac aagaagaagt gattaaaacg taaaattgcc tgatgcgcta cgcttatcag
    36421 gcctacgtta tttcagcaat atattgaatt tacgtgcttt tgtgggccgg acaaagcgtt
    36481 tacgccgcat ccggcatgaa caaagctcac gttgttaaca atcagaaatg ccgggaataa
    36541 atcccggcat tttcataatc agaagttgta acctactacc aggtaaccac cccagccggt
    36601 agagcgaacg ttgaagttgc cgttgccgaa gttcagttct gcatcgtcgt tccactgacc
    36661 accgtcgtgc cagtaacgag ctacgacaga gtagtgccag tgatcgtagt tcagagccag
    36721 aatatggctg gaagcgatag agttattagt acgggtctta ataccgttga ttgcgttacc
    36781 gctgtcatcc cctaaatcgg aaccccagtc gaagttggtg aagccgatgt agctcagctg
    36841 accgccccac agatcggtaa tcggcacaaa gtatttaatt ttgaaacggt aaccgtccca
    36901 ctcgttttcg ttcgctgcgc catagttctg ccactggtat ttcgcataga cgttcatgga
    36961 caggctcatc ggcagaccag tatcgatgtc ggtacccaga cccatgtacc aggtgctctg
    37021 gcgaccattt ttattacgac ccatgtcgta aatgtagttg ttcgcgaagt accactcttt
    37081 gaacggaccg aagttaaggt cagtattggt cagcttgtcg atggagaaac gtggttcgat
    37141 ttccataaac agcggagaac cgtggttcca gataccttta gcatcggagt taccgccgaa
    37201 gaataccggc gcatccgcat aaccatagaa gtcgaaccag tcttttttag cgaatgcttc
    37261 gtactcaagg taggtatcgt tgcggatctg cggtccgaaa cgggtgtgat agcttccgac
    37321 aacgttaacg ctctggtgcc accagtcgga aagatactgc ggtttgtcgt tttcagctgc
    37381 gttgacagta aaagacgaag agagcgccag taccgcaccg gctgccagta atgttttttt
    37441 catatgtatg ccactgtttg aaaatccctt gcgggagtga aaaaggcgca aattgcgttt
    37501 ctaaatattt cgtatacaga ggagcctatt ataaaaatca ttgctcacaa aaatatgttt
    37561 cgtttcacag ttctatcatt tacgtaatcg attgcgttca cgtttacaca cattcgggcg
    37621 gggattgtac tgactttcgc ccttgttgca aacttttact atcaatccag gtgatgtaag
    37681 cagagtaaca aaatgacggg gaaagatgtt gcgggacgca caaaatcgtc ccgaaatacg
    37741 tttactgcat aacaggttga atgtcgtgga tacgtacaaa gcctaactga tccacagaaa
    37801 tcccctttaa ttgtaacgga atatcaacat cgctgggggc gaggacgctg gcaggggcat
    37861 taatcaattg attctgcaca ttgatttcct gaaagttgtc tattgttccc tgaatttgcc
    37921 catattcaac agttccgctg aatgcgggca agggatcatt cgactcaccc tgaatacgta
    37981 gtgtaagggt ggtgccatct gtatcaggcg taatattcac cagcgacata cgtaaagtac
    38041 cgatctggct ttccagtctt gccggtgttt tcgctccagg cagaaggtaa cccccactgc
    38101 tggattttgc attcagtctg ttttgctgag tgattttgac tgtttcttga ttgagttgcg
    38161 tcatctcctg gttcagcgtg ctgacgctgt gtttcatctg tcgcacttca ctttgctgca
    38221 cacaggcgct aaggctgaac aggcttccca gcaggagcag tcgaaaaacg ttagtattca
    38281 taggtcgtcc ctttctcgtc gcaattagcc taatggtaga gggtaaaagc agcgaaagca
    38341 tcgatccttt atctcaaaag cgttgcgcct ttgttgtatc gtcagttcag ggtaaaatag
    38401 atttccgtta accacctggt caggacgccg tatgcattgc ccattctgtt tcgccgtgga
    38461 cactaaggta attgactctc gtctcgtggg cgagggttca tccgtacgcc gccgtcggca
    38521 gtgtctggtg tgtaatgaac gtttcaccac ctttgaagtg gcggagctgg ttatgccgcg
    38581 tgttgtaaaa agcaacgacg tgcgtgaacc gtttaatgaa gagaaattgc gtagcggaat
    38641 gctgcgggcg ctggaaaaac gtccggtgag ttccgatgac gttgaaatgg caatcaatca
    38701 tattaaatcg cagctgcgcg ccaccggtga gcgcgaagta ccgagcaaga tgattggcaa
    38761 tctggtgatg gagcaattga aaaagctcga taaagtcgcc tatatccgtt ttgcctctgt
    38821 ctaccgcagt ttcgaagata tcaaagaatt tggcgaagag atcgcgcgcc tggaggacta
    38881 agccgtgcag gacgagtatt acatggcgcg ggcgctaaag ctggcgcaac gaggacgttt
    38941 taccacccac cccaacccaa atgtcgggtg cgtcattgtc aaagatggcg aaattgtcgg
    39001 tgaaggttac catcaacgag cgggtgaacc acatgccgaa gtacacgcgt tgcgtatggc
    39061 gggtgaaaaa gccaaaggtg caacggcgta tgtgacactc gaaccttgca gccatcacgg
    39121 ccgtacgccg ccttgctgtg atgctttaat tgccgcaggt gtggcgcgcg tggttgcctc
    39181 gatgcaagat cctaacccgc aggtcgctgg gcgtggactt taccgtctgc aacaggctgg
    39241 cattgacgtc agccacggcc tgatgatgag tgaagccgag caattgaata aaggctttct
    39301 caagcggatg cgcaccggct ttccttatat tcagttaaaa cttggcgcat cgcttgatgg
    39361 tcgcacggcg atggcgagcg gcgaaagcca gtggatcact tcgccccagg cgcggcgtga
    39421 tgtacaacga ctgcgcgcgc aaagtcatgc cattttaacc agcagcgcca cggtgctggc
    39481 ggatgatcct gccttaacgg tgcgttggtc cgaactggat gaacaaactc aggcgctcta
    39541 cccgcaacaa aatctccgcc agccggtacg tattgtgatt gatagccaaa atcgcgtgac
    39601 gccggaacat cacattgtgc agcagcccgg cgaaacctgg ttcgcgcgta cgcaggaaga
    39661 ttctcgtgag tggccggaaa cggtgcgtac cttgctgatt ccagagcata aaggtcatct
    39721 ggatctggtt gtactgatga tgcaactggg taaacagcag attaacagca tctgggggga
    39781 agcggggcca acgctcgctg gcgcattgct gcaggcgggt ttagtcgatg agctgattgt
    39841 ctatatcgca cctaaactat taggcagcga cgcccgtgga ttatgcaccc tgccagggct
    39901 tgagaaatta gccgacgccc cccaatttaa attcaaagag atacgtcatg taggcccgga
    39961 tgtttgcctg catttagtgg gtgcatgatc tcccggctcg aaagggaagc agcgcacgaa
    40021 atattatgct aaaatccgcc cccctgcggg gccatactcg aacccgaagg aagaaaatga
    40081 acattattga agctaacgtt gctaccccgg acgctcgcgt cgccatcacc atcgcgcgtt
    40141 tcaacaactt tatcaatgac agcctgctgg aaggtgcaat tgacgcactg aaacgtatcg
    40201 gtcaggtaaa agatgaaaac attaccgttg tttgggtgcc tggtgcctat gagctgccgc
    40261 tggcggcggg tgcactggct aaaaccggta aatacgacgc ggtgattgcg ctgggtacgg
    40321 ttattcgtgg tggcactgcc cattttgaat atgtcgctgg tggtgcaagc aacggcctgg
    40381 cgcatgttgc ccaggacagc gaaattccgg ttgcttttgg ggttctgacc actgaaagca
    40441 ttgaacaagc gatcgaacgt gctggcacca aagctggcaa caaaggtgca gaagctgcac
    40501 tgaccgcgct tgaaatgatt aatgtattga aagccatcaa ggcctgaaat tagtaagggg
    40561 aaatccgtga aacctgctgc tcgtcgccgc gctcgtgagt gtgccgtcca ggcgctctac
    40621 tcctggcagt tgtcccagaa cgacatcgct gatgttgaat accagttcct ggctgaacag
    40681 gatgtaaaag acgttgacgt cctgtacttc cgtgagctgc tggccggggt ggcgactaat
    40741 accgcatacc tcgacggact gatgaagcca tacctgtccc gtctgctgga agaactggga
    40801 caggtagaaa aagcagtact gcgcattgcg ctgtacgaac tgtctaaacg tagcgatgtg
    40861 ccatacaaag tggccattaa cgaagcgatc gaactggcga aatcgttcgg cgcagaagac
    40921 agccataagt tcgtcaacgg tgtactcgat aaagcagcac ctgtgattcg ccctaacaaa
    40981 aagtaatatc caggccggta gattcacgga agaccgttcc atgatcgccg gccttttctt
    41041 ttttacctgc tgaggcataa cgtatggcat gtggcgagtt ctccctgatt gcccgttatt
    41101 ttgaccgtgt aagaagttct cgtcttgatg tcgaactggg catcggcgac gattgcgcac
    41161 ttctcaatat ccccgagaaa cagaccctgg cgatcagcac tgatacgctg gtggcgggca
    41221 accacttcct ccctgatatc gatcctgctg atctggcgta taaagcactg gcggtgaacc
    41281 taagcgatct ggcagcgatg ggggccgatc cggcctggct gacgctggca ttaaccttgc
    41341 cggacgtaga cgaagcgtgg cttgagtcct tcagcgacag tttgtttgat cttctcaatt
    41401 attacgatat gcaactcatt ggcggcgata ccacgcgtgg gccattatca atgacgttgg
    41461 gtatccacgg ctttgttccg atgggacgag ccttaacgcg ctctggggcg aaaccgggtg
    41521 actggatcta tgtgaccggt acaccgggcg atagcgccgc cgggctggcg attttgcaaa
    41581 accgtttgca ggttgccgat gctaaagatg cggactactt gatcaaacgt catctccgtc
    41641 catcgccgcg tattttacag gggcaggcac tgcgcgatct ggcaaattca gctatcgatc
    41701 tctctgacgg tctgatttcc gatctcgggc atatcgtgaa agccagcgac tgcggcgtac
    41761 gtattgacct ggcattgctg ccgttttctg atgcgctttc tcgccatgtt gaaccggaac
    41821 aggcgctgcg ctgggcgctc tctggcggtg aagattacga gttgtgtttc acggtgccgg
    41881 aactgaaccg tggagcgctg gatgtggctc tcggacacct gggcgtaccg tttacctgta
    41941 tcgggcaaat gaccgccgat atcgaagggc tttgttttat tcgtgacggt gaacctgtta
    42001 cgttagactg gaaaggatat gaccattttg ccacgccata aagatgtcgc gaaaagtcgc
    42061 ctgaagatga gtaatccgtg gcatctactt gctgtcggat tcggaagtgg attaagcccg
    42121 atcgttcctg ggacgatggg ctcgctggca gcgattccgt tctggtatct gatgaccttt
    42181 ttgccctggc agctctactc gctggtggtg atgctgggga tctgtatcgg cgtctatctt
    42241 tgtcatcaga ccgcaaaaga tatgggcgtg cacgatcacg gcagcattgt ctgggacgaa
    42301 tttattggta tgtggatcac gctcatggcg ctgccgacca atgactggca gtgggttgcc
    42361 gccgggtttg tgattttccg tattctggat atgtggaaac cgtggccgat ccgctggttt
    42421 gatcgcaatg tgcatggcgg catggggatc atgatagatg atattgtcgc cggggtgatc
    42481 tccgctggca tcctgtactt tattggtcat cactggccgc tgggcattct gtcgtagttg
    42541 tgcaccgatg cctgatgtga cgcttgttgc gtctcatcag gcctggactc ttatttaaat
    42601 cctactaccg gatgcggttt atacggcgtt tccagttcgg caatctgttc cggcttcaaa
    42661 gtgatatcca ccgcgttcaa tagctcatca agctgttctt cccgcgatgt accgataatc
    42721 ggtgcggcaa tgcccggttt actcaacaac caagccagcg caacttgtgc tcgtgttgca
    42781 ccgagttctt cactgacgcc cgttaaccgc tctgcgatct gcgcgtcatt ttcatcgctt
    42841 tctttataga gatttttccc cacctcatca gacaccagtc gtgcggtagt ttctccccac
    42901 ggacgcgtca gtcgcccccg cgccagcggg ctccacggaa tcaccgccac gccctcctga
    42961 taaaacagtg gcagcatctc gcgctcttct tcgcgataaa tcagattgta gtgatcctgc
    43021 atactgacaa actgcgccca gccgtgctgt ttttggagtt ccagtgcctg agcaaactgc
    43081 gaagcgtgca ttgatgacgc gccgatataa cgcgctttcc cggcttttac cacgtcgttc
    43141 agggcttcca gcgtctcttc gatcggcgtg ttgtaatccc agcgatgaat ttgcaggata
    43201 tcgacataat ccatgccgag acgtcgcagg ctgtcgtcga tagagcgcaa aatttgtgca
    43261 cgggataatc cttccggtaa atcaccaacg cgatggaaca ctttggtggc aacgaccacg
    43321 tcttcacgac gggcgaaatc ccgcagtgcg cgaccaacga tctcttcgct gctaccatcg
    43381 gaatagctat tggcggtatc aaagaaattt atgccgcctt ccagtgcgcg tttaattatg
    43441 ggacggctgc tctcttccgg cagtgtccat gcgtgattac cacgatctgg ctcgccaaag
    43501 gtcatacagc cgaggcaaag tcgggaaacg cgaaggtcgg tttttcctaa ggggttgtat
    43561 tgcatgctgc cactcctgcc atgaataatt tcttaagcat agcaggagtg gagtagggat
    43621 tatgccagcc aggccttgat tttggcttcc ataccggcgg catcgaggcc gagttcggcg
    43681 cgcatttctt cctgcgttcc ttgcggaata aagaagtcag gcaggccaat gttcagcacg
    43741 gggactggtt tacgatgggc cattagcact tcgttcactc cgctgcctgc accgcccata
    43801 atggcgtttt cttctacggt aaccagtgct tcatgactgg cggccatttc cagaattaac
    43861 gcttcatcaa gcggtttcac aaaacgcata tcgaccagcg tggcgttcag cgattcggcg
    43921 actttcgccg cttctggcat cagcgtacca aagttaagga tcgccagttt ctcgccacga
    43981 cgcttcacaa tgcctttgcc aattggtagt ttttccagcg gcgtcagttc cacgccgacc
    44041 gcgttgccac gcgggtagcg caccgctgac gggccatcgt tatagtgata gccggtatag
    44101 agcatctggc gacattcgtt ttcatcgctc ggggtcataa tgaccatttc cggtatgcag
    44161 cgcaggtaag agagatcaaa agcaccctga tgggtttgac cgtcagcacc aacaatgccc
    44221 gcgcggtcga tggcgaacag gaccggaagc ttttgaattg ccacgtcatg cagcacctga
    44281 tcataggcgc gttgcaggaa agtggagtag atcgcgacaa tgggtttgta cccaccaatc
    44341 gccagaccgg cggcaaaggt cactgcgtgt tgctcggcaa ttgccacgtc gaagtagcga
    44401 tccgggaatt tacgagaaaa ctcgaccatg ccggaacctt cacgcatcgc cggagtaatc
    44461 gccatcagct tgttatcttt cgccgccgtt tcgcacaacc agtcgccaaa gatttttgaa
    44521 tagctcggta aaccgccgct acttttcggc aaacaaccgc tggagggatc aaatttaggc
    44581 acggcgtgga aagtgattgg gtctttttct gccggttcat aaccacgacc ttttttggtc
    44641 atgatatgca ggaactgcgg gcctttcagg tcacgcatgt tcttcagcgt ggtgataagc
    44701 cccagcacat cgtgaccgtc aaccgggccg atgtagttaa agcccagctc ttcaaacaac
    44761 gtgccaggga ctaccatgcc tttaatatgt tcttcggtac gtttgagcag ctctttaatg
    44821 ggtggcacgc cagagaaaac ttttttcccg ccttcgcgca gtgaagagta aagcttaccg
    44881 gaaagcagct gcgccagatg gttgttgagc gcgccgacat tttcggaaat cgacatttcg
    44941 ttgtcgttga ggaccaccag catatcagga cggatatcgc ccgcgtgatt catcgcttca
    45001 aacgccatgc ctgcggtaat cgcgccatcg ccgattacac agacggtacg gcgatttttg
    45061 ccttctttct cggcagcaac cgcaatacca attccggcac tgatggaggt tgatgaatgc
    45121 ccgacgctta atacgtcata ttcgctttcg ccgcgccacg ggaacgggtg caggccgcct
    45181 ttctgacgga tggtgccgat tttgtcgcgg cgtccggtca aaattttatg cggataagcc
    45241 tgatgcccca catcccaaat caattggtca aacggggtgt tgtagacata gtgcagcgcc
    45301 acggtcagtt cgaccgtgcc cagcccggag gcgaagtgcc cgctggaacg gctcacgctg
    45361 tcgagtaaat agcggcgcag ttcgtcgcag agtttcggta aactctcttt cggcaacagt
    45421 cgtaactcct gggtggagtc gaccagtgcc agggtcgggt atttggcaat atcaaaactc
    45481 atcaggggcc tattaatact tattgtttat ttattacgct ggatgatgta gtccgctagc
    45541 gcttccagtg ccgaggtatc gggtgactgt tcagccagtt gtttcagcga ctgacgggca
    45601 tcgtcgatca gatcccgggc tttcttccgg gcttgctcaa gacccagaag tgcagggtag
    45661 gtacttttac caagttgctg gtcggcaccc tggcgttttc ccaacgttgc agtatctcct
    45721 accacatcca ggatgtcatc ctgaacctgg aaggcaaggc cgatgctctc tgcgtacttg
    45781 tcgagtactg gcagagcacg acgcccttta tctccggcgc ttaatgcacc aaggcgaacg
    45841 gcggcgcgaa tcaatgcgcc ggttttatga cgatgaatac gctcaagcgc gtccagaggt
    45901 acgtgtttgc cttccgcgtc taaatctaat gcctgaccac cgcacattcc ggcaataccg
    45961 ctggcgctcg ccagttcaga aatcatcgaa attctgtcgc gatccgacac ttccggcata
    46021 tcagcatcgc ttaaaatcga gaacgccagc gtttgtaaag cgtcgccagc gagaatcgcg
    46081 tttgcttcgc caaacttcac atggcaggtc ggcaaaccgc gacgcagatc gtcatcatcc
    46141 atcgccggta aatcatcatg aattaatgag taagcgtgga tacactctac ggcggcagcg
    46201 ggtgcgtcca gcgtgtttgt gctaacgcca aacatatgac cggtggcata aaccaggaag
    46261 ggtcgcagac gcttaccacc taataatgca ccatactgca tggtttcgac cacgggagtg
    46321 ttctgaaagg gcagtggggc gataaaacgg ctcagcgcct ggttggcctg cttaacgcag
    46381 gcttcgagtt gctgcggaaa gtccattact cattgtccgg tgtaaaaggg gttagagagg
    46441 cgtcttcatt gtcagacagc agaatttgta cgcgctgttc ggcttgttgt aatttggcct
    46501 gcccctgacg tgccagctgc acgccgcgtt cgaactcgtt cagcgcctct tccagcggca
    46561 ggtcgccact ttccagacgg gttacaatct gttccagctc gctcagcgcc ttttcaaagc
    46621 tggcgggagc ctcatttttc ttcggcataa tgaatgtctg actctcaata tttttcgccc
    46681 cgtcatggta acggactcag ggcaaatagc aaataacgcg caatggtaag gtgatgtgcg
    46741 cagcaaagcg atgttagtgg tatacttccg cgcctggatg cagccgcagg tgtgggctgc
    46801 tgtatttttc cctatacaag tcgcttaagg cttgccaacg aaccattgcc gccatgaagt
    46861 ttatcattaa attgttcccg gaaatcacca tcaaaagcca atctgtgcgc ttgcgcttta
    46921 taaaaatcct taccgggaac attcgtaacg ttttaaagca ctatgatgag acgctcgctg
    46981 tcgtccgcca ctgggataac atcgaagttc gtgcaaaaga tgaaaaccag cgtctggcta
    47041 ttcgcgacgc cctgacccgt attccgggta tccaccatat tctcgaagtc gaagacgtgc
    47101 cgtttaccga catgcacgat atttttgaga aagcgttggt tcagtatcgc gatcagctgg
    47161 aaggcaaaac cttctgcgta cgcgtgaagc gccgtggcaa acatgatttt agctcgattg
    47221 atgtggaacg ttacgtcggc ggcggtttaa atcagcatat tgagtccgcg cgcgtgaagc
    47281 tgaccaatcc ggaagtgact gtccatctgg aagtggaaga cgatcgtctc ctgctgatta
    47341 aaggccgcta cgaaggtatt ggcggtttcc cgatcggcac ccaggaagat gtgctgtcgc
    47401 tcatttccgg tggtttcgac tccggtgttt ccagttatat gttgatgcgt cgcggctgcc
    47461 gcgtgcatta ctgtttcttt aaccttggcg gcgcggcgca tgaaattggc gtgcgtcagg
    47521 tggcgcatta tctgtggaac cgttttggca gctcccaccg cgtgcgtttt gtcgctatta
    47581 atttcgaacc ggtcgtcggg gaaattctcg agaaaatcga cgacggtcag atgggcgtta
    47641 tcctcaaacg tatgatggtg cgtgccgcgt ctaaagtggc tgaacgttac ggcgtacagg
    47701 cgctggtcac cggcgaagcg ctcggccagg tgtccagtca gacgctgacc aacctgcgcc
    47761 tgattgataa cgtctccgat acgctgatcc tgcgtccgct gatttcttac gacaaagagc
    47821 acatcatcaa cctggctcgc cagattggca ccgaagactt tgctcgcacg atgccggaat
    47881 attgcggtgt tatctccaaa agcccgacgg tgaaagcggt taagtcgaag attgaagcgg
    47941 aagaagagaa attcgacttc agcattctcg ataaagtggt tgaagaagcg aataacgttg
    48001 atatccgcga aatcgccctg cagaccgagc aggaagtggt ggaagtggaa accgtcaatg
    48061 gcttcggccc gaacgacgtg atcctcgata tccgttctat cgatgaacag gaagataagc
    48121 cactgaaagt cgaagggatt gatgtagttt ctctgccgtt ctataaactg agcaccaagt
    48181 ttggcgatct cgaccagaac agaacctggc tactgtggtg tgagcgcggg gtgatgagcc
    48241 gtctgcaggc gctctatctg cgcgagcagg gctttaacaa tgtgaaggta tatcgcccgt
    48301 aatttgtggt tgtaacgtcg catctggtca gatgcgacgc ttaccgcatc cgacactact
    48361 cgtaataatt ataaatccct gccgccatca ccagttgtga tgccacttca tgggctttct
    48421 cgcgcccaac ctgcaggtcg ataattttca gaccaaagtc gatagctgtc cccggcccct
    48481 ggctggtcag caattttacc cgtgcatccc agacgacgcg cttgtcctgc cattgttcag
    48541 cgggaatttt gtctttcagc gtcgggaagc cggtcatatt accaatcggg aagatatcgt
    48601 gcggcaccag cacggtggct ggcgcggcgc aaatagccgc gacgatacgc ccggaacggt
    48661 ggaactgttt aacggtttca accagcagag tgctatcgcg aaaacactct gcgcctttaa
    48721 tgccaccagg cagtacgatc acgtcatatt cgccatcagc cacctcgacc agcggcgcat
    48781 ccgccagcag cttcacgccg cgcgagcagg taattgccag gttgccatcg ctggctacgc
    48841 tggcagtggt gactttgata ccgccgcgaa ccaagaggtc gatcgtggtg acggcttcag
    48901 tctcttcact accaggggcg aggcaaacca gtgccgatgc gctcatattc actctccttt
    48961 ctttttacca tttcaaacag gcgggtgttt tccggtacgg caatcccatg cgcgcgggcg
    49021 cggcgtaaga gaaaaccatt gatatagtcg atttcggtgt ggcgcagcgc gcggatatcc
    49081 tgcaacatcg acgagatatt ttccgctgtg gcatcaatca cctgcatcac gtaatcacgc
    49141 aaatcttccg ctgaagtatg atgcccttcg cgttcgatca ctgccgcgac ttcttcgcat
    49201 atttgcataa tttcttgcgg atgatgacgt aattcaccgt tcgggcaatt ccagatggcg
    49261 gtcagtggat taatcacgca gttgactgcc agcttgcgcc acagctcggc gcgaatattg
    49321 ttatgccagg caacgtcagg caacacggtt tgtaaaatat ccgccagata actgtaatcg
    49381 ccatcctgtt gccgtgccgg accaatatgc gtgataccgt ttgccacatg aataatgaca
    49441 ttgccgtcgc ggcgggcggc atgggtggtg gtgcccatca gtaatggctg ctgaatattt
    49501 tgcaactctt cgatggtgcc catgccgttg tgaattaaca gtattggcgt ggttacaggc
    49561 agtgtggacg cgaggctttt gacggcatcg gaaacctgcc atgctttcag cgtcaccagg
    49621 agcagatcgc tggtggcgag aaaatcggga tcgttggcgg tcagcgattc gttaaatatc
    49681 gaaccatctg tctcaaccag attcgcacta caataaggtt gcggtacgcg cagccagccc
    49741 tgaacttcat gaccctgttt gcaaagtgct gtaagccata attgccctaa ggcaccgcat
    49801 cccaatacgg taattttcat tgttcctcct cacccgcaac cactccgggt gttcaataag
    49861 gctatccctt aattgtgcat gctgttgcga ctatgcacaa ttaagggata cgtcctggtg
    49921 caggactgtc ggttatttaa ctttgcgggt attatgcttc gcatcaaaaa tgaagggaga
    49981 ggaaaagatg ccatctttcg atattgtctc tgaagttgat cttcaggaag cacgtaacgc
    50041 ggtcgataac gcgagccgcg aagtggagtc ccgttttgac ttccgtaacg ttgaagcctc
    50101 atttgagctg aacgacgcca gcaaaaccat caaagtgttg agcgagtccg atttccaggt
    50161 caatcagttg ctggatattc tgcgtgccaa gctgctgaag cgcggcattg aaggcagttc
    50221 actggatgta ccggaaaata tcgttcatag cggtaaaacc tggtttgtgg aagcgaaact
    50281 gaagcagggc attgagagcg cgacccagaa aaaaatcgtc aagatgatca aagacagcaa
    50341 actgaaagtg caggcgcaaa ttcagggcga tgagatccgc gtgactggca aatctcgtga
    50401 tgatttgcag gctgtcatgg cgatggtgcg cggtggcgat ctgggtcagc cgttccagtt
    50461 caaaaacttc cgcgattaat cgcgacaacc tgcgctttgt tcatgtcaga tgcggcatga
    50521 acgcctggtt cggcctacaa aggcttgtaa atcaggagct tagtaggcct gatgagcgta
    50581 gcgcagcagg caatttcgcc tcgcttttat gcctggcgaa ttgcctgttc aacatcaaag
    50641 cgattcgtca ctttgctgtc gattttcaca taagctgaat gttcttcttc tgcaatcaac
    50701 acttctttga tgccttcagt ttctagcaaa cgcactttta acgcctcgtt tgcggcaatg
    50761 ttcgccggga tttcaatgcg caaactgctg acatacgccg gttctttcat ggtactggcg
    50821 actgccagcc acactgcggc cagcattgcg ccagcgagaa atacgccctg accgtcaaac
    50881 atgccgtcaa tccagccgcc cagtgaaccg ccaatcgcca cgccaagaaa ctggctggtg
    50941 gagtaaacac ccatcgctgt acctttgtaa cctgctggcg actctttact gataagtgaa
    51001 ggcagaaggg cttccatcaa attaaacgct acaaagaaaa gctgcacgcc gaccaccagt
    51061 tgccagaact gcgtttgcgc gttccacaac acaatttccg caaccacgat caatccgacg
    51121 cagaagacaa agacttgctt cattttgcgc ttaacttcag cgtagataat gaaaggcacg
    51181 accgagccaa aggcgattag cattgtcgcc agatagacct tccagtgttc agccgccggg
    51241 aaccctgcat cagccagttg tccgggcagg gcaacaaacg tcgacatcag caaaatatgc
    51301 agacacataa tgccaaagtt gagtttcagc agccgcggtt ccgccagcac tttactgaaa
    51361 ctgcctttca ccattccgga ctcacgatta agtacgtgag tgctactgtt gggcacaacc
    51421 caaatggtca acgcaatgcc ggtcgttgcc agaatagcga tcatccagaa cagcgcgtgc
    51481 agcccaagtt tgtgagtgat gatcgggcca agcaccatcg caatggcaaa ggtaatgcca
    51541 aagctcacgc cgataaacgc cattgctttg gtgcggtttt gttcgcgcgt gagatcggaa
    51601 agcagcgcca taacggcagc ggcaatcgca ccggagcctt gtagcgcccg gcctagaata
    51661 attccccaga tggagtcaga gagcgcagcg ataacgctac cggcggcaaa caccgccagc
    51721 ccaccgacaa ttaatggttt gcgaccaata cggtcggaaa gcaggccaaa cggaatctga
    51781 aaaacggcct gagtcagacc ataaatacca atggcaatac cgattaatgc ttcgctggca
    51841 ccttgcagag ccatgccata cgtggtcaga accggcagaa ccataaacat gcccagcatg
    51901 cgcaacgaga atacggtccc taaaccccag gtcgcgcgcc tctcacctgg cgtcatttta
    51961 taatcgttca ttaccacctc tgttttaaat tcgcgactag tgtaaagcgg caaacgaatg
    52021 gggtaaacat gcggattttt tagtaaatat ttcgagaggg atatgtttct aatgctaaga
    52081 aaaaaggtgc cgtagcacct ttttaataga gaggttttgt taccacacag cagccagcag
    52141 cgtatgcgag tccggtacca taaaatcaac ggacatcatc accgagaggg cagtgatggc
    52201 gatgatagag aagccgaaca gcttgcgcgc ccagattctg tcatcagcaa ctttataacc
    52261 gcgcagagcc atacctaacc accagacgct aaccgccgcg gcgaccacca gatatttata
    52321 tccagcgtaa ccgccaagag agagcatcag cgtggcaacg gcaaaggcga tgatatacag
    52381 cgtgatgtga ttcttcgcca ccgaaatgcc ttttaccact ggcaataccg gaatgtttgc
    52441 cgcctggtaa tccttaaagc ggaaaatggc gatggcatag gagtgaggca tctgccacag
    52501 gctgaagata gccagcagga tcgctgcgcc gctatcgaac tcgccggtta ctgcacagta
    52561 gccaatcacc ggcggcgcag cgccggagag cgaaccaatc aatgtgccgt agactgagtg
    52621 gcgtttcatg tacaggctat agacgccgac ataaaccaca aagcccatca cccccagcca
    52681 gcaggccagc ggattcgcgc caaaccacag cagcataaag ccagcaatac ccagcaaggt
    52741 ggcgtacacc agcgagacag caggagagat caggccttta accagcaccc gattcttcgt
    52801 cctttccatc tttctgtcga tatccctgtc gatgtagttg ttaaacacac aacccgacgc
    52861 cacaaccagt gacaccccaa ccagcgtgta gataaacagg ggataatcaa tgctgccctt
    52921 tgaggccagc aggaatcccc caatcaccga gatcaggttg ccaaagatga tgcctggttt
    52981 cgttacttgc aggtattgct taaacatcat aaccgccgct cttagtgcat catcatgttg
    53041 tagttgaggt tccacataat ccagatggag cctacaacca ggatagcgat gattagcacg
    53101 gtgaagacaa acgccgtcat gttccagcct tcatctgatt tggtattcat gtgcaggaag
    53161 cacaccagat gcaccagaac ctgtaccact gccattgcca ggattgttcc cagaattacg
    53221 gccggagagg cagcccctgt catcaccatc cagaacggaa tcaccgtcag aatgatcgac
    53281 aggataaagc ctgtcatgta ggtttttacg ctgccatggg acgcgccgct gtgatcggta
    53341 gaatgactca ttacatcgcc cccatcagat aaacaacagt gaacacacag atccaaacca
    53401 catccaggaa gtgccagaac aggctcaggc acatgatgcg ggtacggtta gtgctggtca
    53461 ggccgcgacg agcgatttgt accatcagca ccgccatcca gataagaccg gaagtgacgt
    53521 gcagaccgtg cgtgccgacc agcgcaaaga acgctgacag gaagccgctg cgatccggac
    53581 ccatgccgtt aacaatcagg tgatggaatt cgtagatttc catcccgata aatccggcac
    53641 caaacaaaca ggtcaacgcc agccaggaga taacctggct tttgttgttt ttgtacatgg
    53701 cgatagccgc catgccgtag gtgatggagc tgaacaacag caagaaagtt tcaaccagaa
    53761 cgaacggcag ttcgaaaatg tccttacctg tcgggccgct tgcggtgccg ttcaccagaa
    53821 cggcataggt agcaaacaag attgagaaca gaatgcagtc gctcatcagg tagatccaaa
    53881 atccgaagat tttggttccg cctgcatcgt ggtgcccgtg ttcgtgcgcg tgggcagtcg
    53941 cgtgcgtcaa agtatcagtt gccatttttc agccctgcct tagtaatctc atcgaaatgc
    54001 tggttttcca gtttttcgat ttctgccacc ggcacgtagt aatccacgtc ctcgtcgaag
    54061 cttttcacga tccaggtgat gatcatgcct gcgaagccaa caatcgccag ccaccagata
    54121 tgccagatca tggcgaaacc gaagatggtg gagaaagctg caatgacgat acctgcaccg
    54181 ctgtttttcg gcatatgaat ttcttcatag tggtcaggct ttttatacgc ttcgcctttc
    54241 tctttcattt cccagaatgc atcacgctcg tgaacgtgcg gcacaacggc aaagttatag
    54301 aacggaggcg gggaagagtt tgcccactcc agcgtacggc caccccacgg gtcgccagtc
    54361 aggtcacggt tctggtcgcg gtcgcgaata gaaacgtaca tctgaataac gaggcagaga
    54421 atacccagcg caatcagtac tgcaccgcta gctgcaatca tcagcatggt gtggaactgc
    54481 gggtcaatct gctggctcaa acgacgggtc atgcccatga agcccagtgc atacagcggc
    54541 ataaaggcaa cgaagaagcc gatgatccag aaccagaacg cgcgtttacc ccaggtttca
    54601 ttcagtttga aaccgaacgc tttaggccac cagtagatca tccctgcgaa gcagccgaag
    54661 accacgccgc cgatgataac gttatggaag tgcgcaatca ggaacaggct gttatgcaga
    54721 acgaagtccg cgcccggtac tgccagcagc acgccagtca tcccgcccac cgagaaagtg
    54781 acgataaaac cgatggtcca cagcatcgca gaatggaaca cgatacggcc ctgatacatg
    54841 gtgaacagcc agttgaagat cttcaccccg gtcgggatgg cgataatcat tgtggtgata
    54901 ccaaagaagg cgtttacgtt cgcgcccgca cccatcgtaa agaagtggtg cagccaaacg
    54961 atgaacgaca gcacggtgat acagacggtt gcccatacca gcgaggtata accaaacaga
    55021 cgtttacgcg agaaggttgc cgcaatttcg gagaacacac cgaaaacagg caggatcagg
    55081 atgtaaactt ccgggtggcc ccaggcccaa atcaggttga tgtacatcat catgttgcca
    55141 cccatatcgt tggtaaagaa atgggtgccc agatagcgat ccagggtcaa caacgcgacg
    55201 gtaaccgtca gaattgggaa ggaagcaata atcagtacgt tcgcgcacag tgatgcccag
    55261 gtaaatactg gcatcttgaa catggtcatg cccggtgcgc gcatcttcag aatggtaacg
    55321 aagaagttga taccggtaag cgtcgtacct ataccggata gctggagact ccatatccag
    55381 taatcaacac cgactcccgg actgtactct attcccgata gcggtggata ggccagccag
    55441 ccggtctgcg caaattcgcc cacgccgaga gaaacgttaa ccagaatcac accaacaaca
    55501 gtaaaccaga agcttaagtt gttgaggaac gggaacgcaa cgtcacgcgc gccgatctgc
    55561 agcggaacca ccaggttcat cagaccgata acgaaaggca tcgccacgaa gaagatcata
    55621 atcacgccgt gcgcggtgaa gatctgatcg tagtggtgag gtggcaggaa gcccgcttcg
    55681 cccgccgagg caagagcctg ctggctacgc atcataatgg cgtcagcaaa accacgcagc
    55741 aacatcacaa tcgccacgat gatatacatg ataccgaggc gtttatggtc gacggaggtc
    55801 agccactctt tccacaggta ggtccactta ccgaagtaag tgatcaggcc aacgagcgcc
    55861 agacctccca aaataatgcc agcgatcgta accatgacga taggttcatg gaacgggact
    55921 gcatcaagtg ataattttcc gaacatcttt attcttcctc aaccccttta atgggcggat
    55981 tccgcgtggc tcatgtccat gccttccata ccttcgtgtg cgctgtgctc accttctggc
    56041 tgggtcatgt ccatgctctt accgtgagcc ataaacttgt taatcacatc agcaaacaag
    56101 tctggtttca cgttggagaa atattccacc tggttgtatt cgctaggcgc ggccagtttt
    56161 tcgaacgcag ccatgtcaga catggtgttc ggcgactgct tcgcttttgc gacccactgg
    56221 tcgaattcgg cgcgatccgg tgttgcaata gctttgaact tcatgcctga gaagcccggg
    56281 ccgctgtagc tggcggagat accgtcataa gtaccgggtt cgttggcgat cagatgcagg
    56341 cgagtctgca taccagccat ggcataaatc tggctaccca gacgcggaat gaagaaggag
    56401 ttcatcacgg agttggaggt cactttgaag tacaccggag tgttcgccgg gaaagcgatt
    56461 tcattcacgg tagcaatgcc ctgttccggg tagatgaaga accatttcca gtccatggaa
    56521 accacttcga tggtaatggg cttctcgtcg tgtgccagcg gcttgctagg ctcaagagcg
    56581 tgagtggttt tccaggtcag taccgcaagg aagatgatga ttaagatagg taccgtccag
    56641 accacagctt ccactttatt ggagtgtgac cagttcgggc tgtacttagc atctttattg
    56701 ctcgcacgat acttccaggc gaaaccaaca gccatcaaga ttgcgggaat aacgacaatc
    56761 aacatcaggc caaatgccgt cagtatcagt gaacgttgct ccagaccaat ctgtcctttg
    56821 ggatctaaca gcgcagaatt acagccactg agcaatacag tgcctgcaaa taatgacaac
    56881 catcccaaac ttttattgta tttcctgagt ctcatttaac gacctcaatt ccacgggatc
    56941 tggtggcgtt taaagtgtgt gggcatttta tgggaaggtt acattactgt aaacatgatt
    57001 aaattcctgt tacttggatt tgactgtcag gtcacatatg ttgcaaaaca tatcaagttg
    57061 attttaagaa gctgttgcaa aagggcgtta taacgaaagg ggagtgcaga aggagtttgg
    57121 acgggcaatt ggtataacca atctggaata aaataattgt ttaacaaata attatcatta
    57181 tggtgacaat tgggtggggg gaaaataaag actcgttagc tgaatcgtgt aagaaaaaat
    57241 agaattcata aattgcgtca ataatttcca aacgctaagc cgcacaaaag aacaaatatt
    57301 attaagcgat actgatgttt atttagccgt aataattacg gcgagtgatt actacagcta
    57361 aataatattt acagattacg tcagatgcgt ttttcgtaga gccagataat ccagcaaacc
    57421 accaagcacg acgccagaaa gggcgactaa aaccccgact tccagcagag caggcaggaa
    57481 agagaagtgc gtcaaatcca gcgcgtccat cgtcaacagc agtaaccaca cggccaacag
    57541 gctgacgccc gccgccagtg tccacatggc aaaggcataa cctgccggat attcggtacg
    57601 ggagataaag ttgtcattta ctcgtgtata ttcaagcgtc tggcggcaaa ccagcagcaa
    57661 aataagcccc ggtacggcag cggcgacgga gaatagatag aatgtcgacc agccgtgtgc
    57721 ttcaacaaac caacccgcca cggggccgac ataaactcgt cctacagcgg aaagcgctga
    57781 gagcagggca aattgagtag cggaaaatga cttattacac agcgtcatta acagcgcgac
    57841 aaaggctgat gtgcccatcc cgccacagag gttttcgaaa aagacggctg cgcccatgct
    57901 gtagagatgc ttatcagtaa tcgacagcag ccagtaacca gcgttagacg caccttgtaa
    57961 aatgccgaaa atcagcagcg cccggaacag cgacaggcgc tgcatcaaaa tcccaccgta
    58021 caatgcgccc acaatggtcg ccagtaagcc aagcgttttg ttaaccacgc ctacttcacc
    58081 cgcatcaaac ccgacgccgc gaatcaaaaa cgtggttgtc aggctcatgg cgaatgcgtc
    58141 gcccagctta tacagcacga taagaagcaa aataagccag gcattattgc gaccaaagaa
    58201 atctcgcaga ggtgcaacaa ccgcttgttc cagcgttttt ggcacaggaa tggtgtcggt
    58261 cggttctggt gcaagcaacg tcgcgataat acaagggatc aacagcgccg ccatcaacca
    58321 gtacatgccc tgccagccca gccatttatc tgccagccac agggctaagc cgccggaaac
    58381 cagcatccct aaacggtaac ccagcacgct gattgccgcg cccgcaccac gttcttctgc
    58441 cgggagcaca tcggttttcc acgcatcgaa gacaatatcc tgggaggccg agcaaaaagc
    58501 gatcaccacc gccagtgccg ccatccagcg gagttgggtg ccaggttcga gaaaacccat
    58561 cgccgcaatg gcgactaata acaggatttg cgtggcgagc agccaaccgc gccgccgccc
    58621 aaaaaatggg ggcgtgtagc ggtccatcag cggtgaccag aggaatttaa aaacgtaagc
    58681 ctggcctacc agagagaaga aaccaatggt tttgagatca atattctcga ccgtcatcca
    58741 ggcctgtaag gtaccggatg tcagggcgag cggtagcccg gaagcaaaac ccaggatcag
    58801 caatatggct gaacgcggct gttgaaaaat acgtaaatat tgactggaca tgggcgtcta
    58861 caggcccggt ttgcaccggg ccagagggca gaaattaacg cgcgttctgc ttgatgaatt
    58921 cgtgaatgct ggtgtcctga gacatatcag cgatggtatc ggtcagcaca ctgttaaccg
    58981 catcggcgat atttttgttg gaggcctgga acgcaccttc aacgttgtag ctggcacgat
    59041 agtttttggt tattttgttg ccattctgcg cggtagcgat gatggcgata tccgctttgg
    59101 tagcgatgtt gtagcgcacg ttgccctggg acacgtcagc atacagttgg ctaacgatga
    59161 tttgcagatt aaccgggcca ttcggaccaa ccatgtaacc acgcgcggtc atctgttttt
    59221 ccagcacttc ttgcagcagg aaacgcagat cgcgggaggc ggccagggta acgatttgat
    59281 tatcgcgggt gacttttgcc agcgcctgat cggtacgctg atcggcacca ttaatgctta
    59341 cggtgacgcc catcaggctt ggatcctgct gtggcagtgt aatcgtcggg gaaacttcaa
    59401 tagttgttgg cggttttgcg catcctgcaa gcataaacag agcaactaac gggaagagga
    59461 tttttttgaa catgttcggg ctctcagaga ctcttaagcg tgtttggtaa aaattcccgc
    59521 catcataaca ttgccaacgg cgaggggaag tgggtaaggc atgtaaattc atcatgttga
    59581 cgaaataatc acccctggta aaagaaacgc tgatgcgagg cctgtgtttc aatctttaaa
    59641 tcagtaaact tcatacgctt gacggaaaaa ccaggacgaa acctaaatat ttgttgttaa
    59701 gctgcaatgg aaacggtaaa agcggctagt atttaaaggg atggatgaca tctcagcgtt
    59761 gtcggaggag atatttcatg atgatacgtg agcggataga agaaaaatta agggcggcgt
    59821 tccaacccgt attcctcgaa gtagtggatg aaagctatcg tcacaatgtc ccagccggct
    59881 ctgaaagcca ttttaaagtt gtgctggtca gcgatcgttt tacgggtgaa cgttttctga
    59941 atcgtcatcg aatgatttac agtactttag cggaggaact ctctactacc gttcatgcgc
    60001 tggctctgca tacttacact attaaggagt gggaagggtt gcaggacacc gtctttgcct
    60061 ctcctccctg tcgtggagca ggaagcatcg cgtaaaaacg catttgcaac tgtcggcgct
    60121 ttttcagtat gttgctaaag attttatgaa aaacggcctg cgggccgttt tgttttgtct
    60181 ggattttgcg ctttttgccc agcattcaga cgaaaattgc ccgggaattg tgaaaaaata
    60241 cgcgacagcg cgcaataacc gttctcgact cataaaagtg atgccgctat aatgccgcgt
    60301 cctatttgaa tgctttcggg atgattctgg taacagggaa tgtgattgat tataagaaca
    60361 tcccggttcc gcgaagccaa caacctgtgc ttgcggggta agagttgacc gagcactgtg
    60421 attttttgag gtaacaagat gcaagtttca gttgaaacca ctcaaggcct tggccgccgt
    60481 gtaacgatta ctatcgctgc tgacagcatc gagaccgctg ttaaaagcga gctggtcaac
    60541 gttgcgaaaa aagtacgtat tgacggcttc cgcaaaggca aagtgccaat gaatatcgtt
    60601 gctcagcgtt atggcgcgtc tgtacgccag gacgttctgg gtgacctgat gagccgtaac
    60661 ttcattgacg ccatcattaa agaaaaaatc aatccggctg gcgcaccgac ttatgttccg
    60721 ggcgaataca agctgggtga agacttcact tactctgtag agtttgaagt ttatccggaa
    60781 gttgaactgc agggtctgga agcgatcgaa gttgaaaaac cgatcgttga agtgaccgac
    60841 gctgacgttg acggcatgct ggatactctg cgtaaacagc aggcgacctg gaaagaaaaa
    60901 gacagcgctg ttgaagcaga agaccgcgta accatcgact tcaccggttc tgtagacagc
    60961 gaagagttcg aaggcggtaa agcgtctgat ttcgtactgg cgatgggcca gggtcgtatg
    61021 atcccgggct ttgaagacgg tatcaaaggc cacaaagctg gcgaagagtt caccatcgac
    61081 gtgaccttcc cggaagaata ccacgcagaa aacctgaaag gtaaagcagc gaaattcgct
    61141 atcaacctga agaaagttga agagcgtgaa ctgccggaac tgactgcaga attcatcaaa
    61201 cgtttcggcg ttgaagatgg ttccgtagaa ggtctgcgcg ctgaagtgcg taaaaacatg
    61261 gagcgcgagc tgaagagcgc catccgtaac cgcgttaagt ctcaggcgat cgaaggtctg
    61321 gtaaaagcta acgacatcga cgtaccggct gcgctgatcg acagcgaaat cgacgttctg
    61381 cgtcgccagg ctgcacagcg tttcggtggc aacgaaaaac aagctctgga actgccgcgc
    61441 gaactgttcg aagaacaggc taaacgccgc gtagttgttg gcctgctgct gggcgaagtt
    61501 atccgcacca acgagctgaa agctgacgaa gagcgcgtga aaggcctgat cgaagagatg
    61561 gcttctgcgt acgaagatcc gaaagaagtt atcgagttct acagcaaaaa caaagaactg
    61621 atggacaaca tgcgcaatgt tgctctggaa gaacaggctg ttgaagctgt actggcgaaa
    61681 gcgaaagtga ctgaaaaaga aaccactttc aacgagctga tgaaccagca ggcgtaattt
    61741 acgcagcata acgcgctaaa ttcgcacaaa ggcccgtcac cgccaggtgg tgggcttttt
    61801 ttgtcatgaa ttttgcatgg aaccgtgcga aaagcctctt tcggtgttag cgtaacaaca
    61861 aaagattgtt atgcttgaaa tatggtgatg ccgtacccat aacacaggga ctagctgata
    61921 atccgtccat aaggttacaa tcggtacagc aggttttttc aattttatcc aggagacgga
    61981 aatgtcatac agcggcgaac gagataactt tgcaccccat atggcgctgg tgccgatggt
    62041 cattgaacag acctcacgcg gtgagcgctc ttttgatatc tattctcgtc tacttaagga
    62101 acgcgtcatt tttctgactg gccaggttga agaccacatg gctaacctga ttgtggcgca
    62161 gatgctgttc ctggaagcgg aaaacccaga aaaagatatc tatctgtaca ttaactcccc
    62221 aggcggggtg atcactgccg ggatgtctat ctatgacacc atgcagttta tcaagcctga
    62281 tgtcagcacc atctgtatgg gccaggcggc ctcgatgggc gctttcttgc tgaccgcagg
    62341 ggcaaaaggt aaacgttttt gcctgccgaa ttcgcgcgtg atgattcacc aaccgttggg
    62401 cggctaccag ggccaggcga ccgatatcga aattcatgcc cgtgaaattc tgaaagttaa
    62461 agggcgcatg aatgaactta tggcgcttca tacgggtcaa tcattagaac agattgaacg
    62521 tgataccgag cgcgatcgct tcctttccgc ccctgaagcg gtggaatacg gtctggtcga
    62581 ttcgattctg acccatcgta attgatgcca gaggcgcaac tgtgccgcta tacttatcca
    62641 gggcggcaca acgctgtaag cggcttgcgc ctgagaatgg catttgcgtc gtcgtgtgcg
    62701 gcacaaagaa caaagaagag gttttgaccc atgacagata aacgcaaaga tggctcaggc
    62761 aaattgctgt attgctcttt ttgcggcaaa agccagcatg aagtgcgcaa gctgattgcc
    62821 ggtccatccg tgtatatctg cgacgaatgt gttgatttat gtaacgacat cattcgcgaa
    62881 gagattaaag aagttgcacc gcatcgtgaa cgcagtgcgc taccgacgcc gcatgaaatt
    62941 cgcaaccacc tggacgatta cgttatcggc caggaacagg cgaaaaaagt gctggcggtc
    63001 gcggtataca accattacaa acgtctgcgc aacggcgata ccagcaatgg tgtcgagttg
    63061 ggcaaaagta acattctgct gatcggtccg accggttccg gtaaaacgct gctggctgaa
    63121 acgctggcgc gcctgctgga tgttccgttc accatggccg acgcgactac actgaccgaa
    63181 gccggttatg tgggtgaaga cgttgaaaac atcattcaga agctgttgca gaaatgcgac
    63241 tacgatgtcc agaaagcaca gcgtggtatt gtctacatcg atgaaatcga caagatttct
    63301 cgtaagtcgg acaacccgtc tattacccgt gacgtttccg gtgaaggcgt acagcaggca
    63361 ctgttgaaac tgatcgaagg tactgttgct gccgttccac cgcagggcgg gcgtaagcat
    63421 ccgcagcagg aatttttgca ggttgatacc tccaagatcc tgtttatttg tggcggtgcg
    63481 tttgccggtc tggataaagt gatttcccac cgtgtagaaa ccggctccgg cattggtttt
    63541 ggcgcgacgg taaaagcgaa gtccgacaaa gcaagcgaag gcgagctgct ggcgcaggtt
    63601 gaaccggaag atctgatcaa gtttggtctt atccctgagt ttattggtcg tctgccggtt
    63661 gtcgcaacgt tgaatgaact gagcgaagaa gctctgattc agatcctcaa agagccgaaa
    63721 aacgccctga ccaagcagta tcaggcgctg tttaatctgg aaggcgtgga tctggaattc
    63781 cgtgacgagg cgctggatgc tatcgctaag aaagcgatgg cgcgtaaaac cggtgcccgt
    63841 ggcctgcgtt ccatcgtaga agccgcactg ctcgatacca tgtacgatct gccgtccatg
    63901 gaagatgtcg aaaaagtggt tatcgacgag tcggtaattg atggtcaaag caaaccgttg
    63961 ctgatttatg gtaagccgga agcgcaacag gcatctggtg aataattaac cattcccata
    64021 caattagtta accaaaaagg ggggatttta tctccccttt aatttttcct ctattctcgg
    64081 cgttgaatgt gggggaaaca tccccatata ctgacgtaca tgttaataga tggcgtgaag
    64141 cacagtcgtg tcatctgatt acctggcgga aattaaacta agagagagct ctatgaatcc
    64201 tgagcgttct gaacgcattg aaatccccgt attgccgctg cgcgatgtgg tggtttatcc
    64261 gcacatggtc attcccttat ttgtcgggcg ggaaaaatct atccgttgtc tggaagcggc
    64321 gatggaccat gataaaaaaa ttatgctggt cgcgcagaaa gaagcttcaa cggatgagcc
    64381 gggtgtaaac gatcttttca ccgtcgggac cgtggcctct atattgcaga tgctgaaact
    64441 gcctgacggc accgtcaaag tgctggtcga ggggttacag cgcgcgcgta tttctgcgct
    64501 ctctgacaat ggcgaacact tttctgcgaa ggcggagtat ctggagtcgc cgaccattga
    64561 tgagcgggaa caggaagtgc tggtgcgtac tgcaatcagc cagttcgaag gctacatcaa
    64621 gctgaacaaa aaaatcccac cagaagtgct gacgtcgctg aatagcatcg acgatccggc
    64681 gcgtctggcg gataccattg ctgcacatat gccactgaaa ctggctgaca aacagtccgt
    64741 tctggagatg tccgacgtta acgaacgtct ggaatatctg atggcaatga tggaatcgga
    64801 aatcgatctg ctgcaggttg agaaacgcat tcgcaaccgc gttaaaaagc agatggagaa
    64861 atcccagcgt gagtactatc tgaacgagca aatgaaagct attcagaaag aactcggtga
    64921 aatggacgac gcgccggacg aaaacgaagc cctgaagcgc aaaatcgacg cggcgaagat
    64981 gccgaaagag gcaaaagaga aagcggaagc agagttgcag aagctgaaaa tgatgtctcc
    65041 gatgtcggca gaagcgaccg tagtgcgtgg ttatatcgac tggatggtac aggtaccgtg
    65101 gaatgcgcgc agcaaggtca aaaaagacct gcgtcaggcg caggaaatcc ttgataccga
    65161 ccattatggt ctggagcgcg tgaaagatcg catccttgag taccttgcgg ttcaaagccg
    65221 tgtcaacaaa atcaagggac cgatcctctg cctggtaggg ccgccggggg taggtaaaac
    65281 ctctcttggt cagtccattg ccaaagccac cgggcgtaaa tatgtccgta tggcgctggg
    65341 cggcgtgcgt gatgaagcgg aaatccgtgg tcaccgccgt acttacatcg gttctatgcc
    65401 gggtaaactg atccagaaaa tggcgaaagt gggcgtgaaa aacccgctgt tcctgctcga
    65461 tgagatcgac aaaatgtctt ctgacatgcg aggcgatccg gcctctgcac tgcttgaagt
    65521 gctggatcca gagcagaacg tagcgttcag cgaccactac ctggaagtgg attacgatct
    65581 cagcgacgtg atgtttgtcg cgacgtcgaa ctccatgaac attccggcac cgctgctgga
    65641 tcgtatggaa gtgattcgcc tctccggtta taccgaagat gaaaaactga acatcgccaa
    65701 acgtcacctg ctgccgaagc agattgaacg taatgcactg aaaaaaggtg agctgaccgt
    65761 cgacgatagc gccattatcg gcattattcg ttactacacc cgtgaggcgg gcgtgcgtgg
    65821 tctggagcgt gaaatctcca aactgtgccg caaagcggtt aagcagttac tgctcgataa
    65881 gtcattaaaa catatcgaaa ttaacggcga taacctgcat gactacctcg gtgttcagcg
    65941 tttcgactat ggtcgcgctg ataacgaaaa ctgtgtcggt caggtaaccg gtctggcgtg
    66001 gacggaagtg ggcggtgact tgctgaccat tgaaaccgca tgtgttccgg gtaaaggcaa
    66061 actgacctat accggttcgc tcggcgaagt gatgcaggag tctattcagg cggcgttaac
    66121 ggtggttcgt gcgcgtgcgg aaaaactggg gatcaaccct gatttttacg aaaaacgtga
    66181 catccacgtc cacgtaccgg aaggtgcgac gccgaaagat ggtccgagtg ccggtattgc
    66241 tatgtgcacc gcgctggttt cttgcctgac cggtaacccg gttcgtgccg atgtggcaat
    66301 gaccggtgag atcactctgc gtggtcaggt actgccgatc ggtggtttga aagaaaaact
    66361 cctggcagcg catcgcggcg ggattaaaac agtgctaatt ccgttcgaaa ataaacgcga
    66421 tctggaagag attcctgaca acgtaattgc cgatctggac attcatcctg tgaagcgcat
    66481 tgaggaagtt ctgactctgg cgctgcaaaa tgaaccgtct ggcatgcagg ttgtgactgc
    66541 aaaatagtga cctcgcgcaa aatgcactaa taaaaacagg gctggcaggc taattcgggc
    66601 ttgccagcct ttttttgtct cgctaagtta gatggcggat cgggcttgcc cttattaagg
    66661 ggtgttgtaa ggggatggct ggcctgatat aactgctgcg cgttcgtacc ttgaaggatt
    66721 caagtgcgat ataaattata aagaggaaga gaagagtgaa taaatctcaa ttgatcgaca
    66781 agattgctgc aggggctgat atctctaaag ctgcggctgg ccgtgcgtta gatgctatta
    66841 ttgcttccgt aactgaatct ctgaaagaag gggatgatgt agcactggta ggttttggta
    66901 cttttgccgt taaagagcgt gctgcccgta ctggccgcaa cccgcagacc ggtaaagaga
    66961 tcaccatcgc tgctgctaaa gtaccgagct tccgtgcagg taaagcactg aaagacgcgg
    67021 taaactaagc gttgtccccg gtggggatgt gacgaagttc aagggcgcat ctactgatgt
    67081 gcctttttta tttgtattcg gtgactttct gcgtcttgtg ggctgacaat tgcccccgtt
    67141 tcttgtcaca ataggccttt gcgcgcatcg atacgttgcg tgaggtacac agtcatctac
    67201 agcggagtgt tgttacacca tgatggacag cttacgcacg gctgcaaaca gtctcgtgct
    67261 caagattatt ttcggtatca ttatcgtgtc gttcatattg accggcgtga gtggttacct
    67321 gattggcgga ggcaataact acgccgcaaa agtgaatgac caggaaatca gccgtgggca
    67381 gttcgagaac gcctttaaca gcgagcgtaa tcgcatgcag caacagctgg gcgatcaata
    67441 ctccgagctg gcagcgaatg aaggctatat gaaaaccctg cgtcaacagg tgctgaatcg
    67501 tctgatcgac gaggcgctgt tggatcagta cgctcgtgag ctgaaactgg gtatcagtga
    67561 tgagcaggtt aaacaggcga ttttcgcgac cccagccttc caggttgacg gcaaatttga
    67621 taacagccgc tataacggta tcctcaacca gatggggatg accgccgatc agtacgccca
    67681 ggcgctgcgt aaccagctca ctacccaaca gctgattaac ggtgttgccg gtaccgattt
    67741 tatgctgaaa ggtgaaaccg acgagctggc ggcactggtc gcgcaacaac gcgtggtgcg
    67801 tgaggcgact atcgatgtta acgcgctggc ggcgaagcag cctgtgaccg aacaggagat
    67861 tgccagctac tacgaacaaa acaaaaacaa tttcatgacg ccggaacaat tccgcgtgag
    67921 ttacatcaag ctggatgccg caacgatgca gcaaccggtt agcgatgcgg atatccagag
    67981 ctactacgat cagcatcagg atcaattcac ccagccgcag cgtacccgct acagcatcat
    68041 ccagaccaaa actgaagatg aagcgaaagc ggtacttgat gagctgaata aaggcggtga
    68101 ttttgctgca ttagccaaag aaaaatctgc cgatattatc tctgcccgta acggcggcga
    68161 tatgggttgg ttagaagatg ccactatccc cgacgaactg aaaaatgctg gtctgaaaga
    68221 aaaaggccaa ctgtctggtg tcatcaaatc ttcggtcggt ttcctgattg tacgtctgga
    68281 cgacattcag ccagcgaaag tgaaatcgtt agacgaagta cgtgacgaca ttgcggcgaa
    68341 agtgaaacac gaaaaagccc tcgatgcgta ctatgcgctg cagcagaaag tgagcgatgc
    68401 ggcaagcaac gacacagagt ctctggccgg tgcagagcaa gctgccggcg ttaaagccac
    68461 tcagacgggt tggttcagca aagataacct gccggaagag ttgaacttca agccggttgc
    68521 cgacgctatc tttaacggcg gtctggtagg tgaaaacggc gcgccgggca tcaactctga
    68581 catcatcacc gtagacggcg accgtgcatt cgtgctgcgc atcagcgagc acaaaccgga
    68641 agcggtgaaa ccgttggcag atgttcagga acaagttaag gcactggttc agcacaacaa
    68701 agctgaacaa caggcgaaag tggatgctga gaaactgctg gttgatttga aagccggcaa
    68761 aggtgcggaa gctatgcagg ctgccggtct gaaatttggc gagccgaaaa ccttaagccg
    68821 ttccggtcgt gacccgatta gccaggcggc gtttgcactg ccactgccag cgaaagacaa
    68881 accgagctac ggtatggcga ccgatatgca aggtaatgtg gttctgctgg cgctggatga
    68941 agtgaaacaa ggttcaatgc cggaagatca gaaaaaagcg atggtgcagg gtatcaccca
    69001 gaacaacgca caaatcgtct ttgaagctct gatgagtaac ctgcgtaaag aggcgaaaat
    69061 caaaattggc gatgcgctgg aacagcaata atcctgaagc cgcctcgcaa aaaaatgcgt
    69121 tgcagctgta acaagaaaag gtcgctttcg cggccttttc catttctgaa cattgccatt
    69181 tgtttactgt tttcactgcc gttaaggtga ttccactgtt aacaaacaag gagaaaacag
    69241 tatgaaacac ggaattaaag cactgctcat taccctgtcc ctggcctgtg ccggaatgtc
    69301 tcatagcgcg ctggcggcag cttctgtggc gaaaccgacg gcggtagaaa ccaaagcgga
    69361 agctcctgca gcacaaagta aagcagcagt accggcgaaa gccagtgacg aagaaggcac
    69421 ccgggtcagc attaataatg ccagcgcgga agagctagcc cgcgcgatga atggcgttgg
    69481 cctgaagaaa gcgcaggcga ttgtcagtta tcgcgaagag tacggtccgt ttaaaacagt
    69541 ggaggatcta aagcaggtgc cggggatggg caattcgctg gtggaacgta atctggcggt
    69601 attaaccctg taattaattt gcatagtggc aattttttgc cagactgaag aggtcatacc
    69661 agttatgacc tctgtactta taacaacaac gtaaggttat tgcgctatgc aaacacaaat
    69721 aaaagttcgt ggatatcatc tcgacgttta ccagcacgtc aacaacgccc gctaccttga
    69781 atttctcgaa gaagcccgct gggatgggtt ggaaaatagc gacagttttc agtggatgac
    69841 ggcccataac atcgccttcg tcgtggtcaa tatcaatatt aactatcgtc gcccagcggt
    69901 attaagtgac ctgttaacta ttaccagtca gttgcagcaa ttaaacggta aaagcggcat
    69961 cttaagccag gtcattacac tggagccgga agggcaggtg gtagcggatg cgcttattac
    70021 gtttgtttgt attgatctta aaacgcagaa agcattagct ctggaagggg aattgcgcga
    70081 aaagctggag cagatggtta agtaaacgtt ttgtggtgcc ggatgctcaa gccgcatccg
    70141 gcgacacccg gaataattac ctcaacccgg ttttctgctt catcgctgcc atcaccgtcg
    70201 gtttatcggc cagataatga ttcaaaccgt tggcgcgtaa attacatgcc gcacaatgac
    70261 cgcaaccgtc gcctttaatg ccgttatagc aggtcaacgt ttcgttacgg actaaatcca
    70321 gtttgccgta ataatctgcc agcgcccagg tttccgcttt atcaatccac atcagcggcg
    70381 tttcaaaacg aatatctttc gccatgccca aactgacggc atggtttagt gctttcacaa
    70441 actcatcgcg gcaatccggg tagccggaga aatccgtttc acagacgccg gtaattacgg
    70501 cttctgcttt tacctgatac gcatatattg ccgccagcgt caggaacaaa atattacgcc
    70561 ctgggacaaa cgtattcggg atgccatcgg cttcaggttc ataatcaggc accggaatgc
    70621 tgtcacgtgt caggctgctg accgccagct cgttgagcag cgttacatca agaaccttat
    70681 gcgcgcgtgc tcccagtttc agcgccagtt cgcgtgccac gtcgatttct gcgcgatgtc
    70741 gctgaccgta atcgaacgtc acgcaatgga cttcatcata ttgttgtaat gcctgcacca
    70801 gacaggtggt ggaatcctgg cctccactga acacaacgac agcacgtttc atagataatc
    70861 ctgcttgaac aataaaagcg ttatggtaac gcctgcgatt aacccggacc agctattcat
    70921 tgcgacggcg cgggaagcca ggcttcggta aattcaaacc agccgcgcgg tgtcagtcgc
    70981 acaccgttca cgccgggagg ggcactaatg cgatagtgat agttgaacag cggcgtcagc
    71041 gtcgcgtctg ccattaactg gctaaaaacc gctttcaggg cattaaatcg gttttcctca
    71101 tcaggcatta cttgcaccgc gtccagcgtc gattgcagat gtgcatatgc tggagcgtcg
    71161 aaaacatgtg gccatagtgg atcgcaacgt agccattgct ccagagtata ttccggtgct
    71221 tcgccaatta atctgtcgcc catcatgagg tctgcgtgtg ccagtagggt cgtgtcgtcc
    71281 cagttttttg cgttatgaaa aataattgtg agttcacagc cttccgctgc cagtgtcgcc
    71341 tgtaggcgtt ctgccatggt atgaagttct atcggtaggt gataaaccag cgtcaaggtt
    71401 ttcggtagtt tgacttcatc cggtacttgc cagtgcggaa tagtccagcc tggcagtaat
    71461 gcatgactgg cggtgatcag gttttctccg acttctaacg tttgtaataa accggattga
    71521 tgaataatgg agatcacttt tcgcgcctgc cagagggaga gtcggggact tttgcgcaac
    71581 gttaaatagc aaaaacctaa actgatgcca ctactgacct ggctgacccg ttgcagctcc
    71641 tccggtttgc cgatggtgat ttgcacggga tgccgacaac tggttcccaa atctttttcg
    71701 aaaagcggcg gagttatcca gtactcaacc gctttaagca gcggatgacg caaatggtaa
    71761 taatcatggc tctccaggcg caccagctcc gctgtgaatt gtgttaagcg aaaaggacca
    71821 gtgccgatca gtgggaattg cggatgcgcc agatggctgc aatagctcgc cagccggtgc
    71881 gcaagccagt aatcggggcg atgtaaaaag aaggtcagac actgcggatg ggtgacttca
    71941 atacgcttca cgctaataaa taattgatcc agtgctggca gttgtaacag catcaataat
    72001 cgctggtgta agtgtgaggc ttttactgca tcgccgttat gccagtgtag ggttgaacga
    72061 agataaaagt cccagcgtaa cccgtcagta gaggtttccc agtgatgcgc taaatcgcca
    72121 atcgggcgct gagtattatt atcgaagcgg gtcaggccgg aaaatatctg cccggcgaga
    72181 tgctgctcgg cacggccggg caaaaagcct ggttgtagcg gttcgagcgg gcgatagtag
    72241 ggaatacgca acgtgggtgt atcgttttgc cattgtccgc ccataaacgg ctgtaacaga
    72301 gtgcgtagct cacctggggc cagttgcgcc agctccagca catcttgctg ctttccggtt
    72361 tccagtgcct gttccatcat cgcattgcgt agcgattccg gcgtgaccag aaagcgtaat
    72421 atgtccgcgc tttccgcgtc ctgactgcgc ctgccactcc agccatcccg cctcctgtgc
    72481 ctgacgcaac agcgtacgaa catggcgttc gctgcaaaaa cagcgttcgg ccagttcgct
    72541 gacggtgacg gtttgcggct ttccggctga aggttgccac agacgttgat actggttaag
    72601 acggttgagc aatcgcatat aaacccggaa caatattatt taactattca ctattacttc
    72661 cgtatatatc aggtgatact caatctccat taaccgtgtc acagagtgga gaaagaaatg
    72721 gctcgtctgg cagcatttga tatggatggc actttattga tgcctgacca tcatttaggt
    72781 gagaaaaccc tctctacttt ggcgcgactg cgtgaacgcg acattaccct cacttttgcc
    72841 acggggcgtc atgcgctgga gatgcagcat attctcgggg cgctatcgct ggatgcatat
    72901 ttgattaccg gcaacggaac gctcgtgcat tctctggaag gtgaactttt acatcgtgat
    72961 gatttacctg cggatgtcgc ggagctggtg ctgtatcagc aatgggatac ccgagccagc
    73021 atgcatatct tcaatgacga cggttggttt accgggaaag agatccctgc gttgttgcag
    73081 gcatttgtct atagcggttt tcgttatcag ataatcgatg tcaaaaaaat gccactcggc
    73141 agcgtcacca agatctgctt ctgtggcgat cacgacgatc ttacacgctt gcagatccag
    73201 ctatacgaag cattaggcga gcgtgcacat ttgtgttttt ccgccacgga ttgcctcgaa
    73261 gtgctgccgg tgggctgcaa taaaggcgct gcattgacgg tgctgaccca acatctaggt
    73321 ttatcgttgc gcgattgcat ggcctttggt gatgcgatga acgatcgcga aatgttaggc
    73381 agcgtcggta gcgggtttat tatgggcaat gcgatgccgc aactgcgcgc ggagctcccg
    73441 catttaccgg tgattggaca ttgccgaaat caggctgtct ctcactattt gacgcactga
    73501 ctggactatc cacatctacc ttattccccc gaataatgag atcccttcca gcaccgggca
    73561 attgcccggt tttttttgcg ttgaatttgt cattttgtgc cgtggtgttt aaaccgcaca
    73621 gaataaattg tcgtgatttc acctttaaaa tagaattaaa agagaaaaaa attctctgtg
    73681 gaagggctat gttagataaa attgaccgta agctgctggc cttactgcag caggattgca
    73741 ccctctcttt gcaggcactg gctgaagccg ttaatctgac aaccacccct tgctggaagc
    73801 gcctgaaacg gctggaggac gacggtatcc ttatcggcaa agtcgccctg ctggatccgg
    73861 aaaaaatagg cctcggcctg accgcctttg tgctgataaa aacgcaacat cacagtagcg
    73921 aatggtattg ccgctttgtc acggtggtta ccgaaatgcc agaagtgctg gggttctggc
    73981 gcatggctgg tgaatacgat tatctgatgc gcgtccaggt tgccgacatg aaacgctacg
    74041 acgagtttta taagcgtctg gtaaacagcg tgccggggct gtcggacgtc acttccagct
    74101 tcgcgatgga acagattaaa tacaccactt ctttacccat cgaataaata tccagaatca
    74161 ggtcaggaca caacgcgtgc gattatttgc tcaattaagc tggtatttcc gtcgggaatg
    74221 gcgtcgctat ctcggggctg tcgccttgct tgtcattatc gcgatgctgc aactggttcc
    74281 gccaaaagtg gttggtattg ttgtcgatgg cgtgacagaa caacacttta ctaccgggca
    74341 gatcctgatg tggatcgcca ccatggtgct gattgccgtt gtggtttatt tcctgcgtta
    74401 cgtctggcgg gtattgctgt ttggtgcgtc ttatcaactg gctgttgaac tgcgtgaaga
    74461 ttattaccgt cagctaagcc ggcagcatcc tgagttttac ctgcgtcatc gcacgggtga
    74521 cctcatggct cgtgcgacca atgacgtcgt tcgcgtcgtg tttgcagccg gagaaggggt
    74581 gctgacgctg gtggattcac tggtgatggg ctgcgctgtg ttgattatga tgtctacgca
    74641 aattagctgg cagttgacct tatttgccct gttgccgatg ccagtgatgg cgatcatgat
    74701 caagcgcaac ggcgatgcct tgcatgaacg ctttaagctg gcacaggcgg cgttttctag
    74761 tcttaatgac cgcacctagg aaagcctcac cagtatccgc atgatcaaag cctttggtct
    74821 ggaagatcgc cagtcggcgt tatttgccgc ggatgccgaa gataccggca aaaaaaacat
    74881 gcgggtggcg cgtattgatg ctcgtttcga cccgaccatc tatatcgcga ttggtatggc
    74941 gaacttgctg gcgattggcg gcggtagttg gatggtggtg cagggcagtt taacgctggg
    75001 ccagctcacc agttttatga tgtatttagg tctgatgatt tggccaatgc tggcgctggc
    75061 atggatgttt aacattgtgg aacgtggtag tgctgcatac agccgtattc gcgcgatgct
    75121 ggcggaagcg ccggtggtga acgatggtag cgaacccgtg ccggaagggc gtggcgaact
    75181 ggatgtaaat attcaccagt tcacgtatcc gcagactgac catcctgcgc tggaaaacgt
    75241 caatttcgcc ctgaaacccg gtcagatgct gggtatctgc gggccgactg gttccggcaa
    75301 aagtaccctg ttgtcgctca ttcagcgtca tttcgacgtc agcgaggggg atattcgctt
    75361 tcatgatatt cctctgacga agttacaact cgatagctgg cgtagccgcc tggcggtagt
    75421 tagccagaca ccgttccttt tttccgacac cgtagcgaac aacatcgcgt tgggttgccc
    75481 gaatgccacc cagcaagaga ttgagcatgt cgcgcggtta gccagcgtac atgacgatat
    75541 tttgcgtcta ccgcaaggtt acgatacaga agtgggcgag cgcggcgtga tgctttccgg
    75601 tgggcaaaaa cagcgtatct ccattgctcg agcgttatta gtcaacgcgg aaatcctcat
    75661 ccttgatgat gcgctttcgg cggtggacgg acgcacagag caccagatcc tgcataacct
    75721 gcgtcagtgg ggacagggaa gaacggtaat catcagtgcc catcgccttt cggcactgac
    75781 ggaagccagt gaaaatgtaa tgaacgcatc
//
LOCUS       DAJVSY010000004        64628 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.004, whole genome shotgun sequence.
ACCESSION   DAJVSY010000004 DAJVSY010000000
VERSION     DAJVSY010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 64628)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 64628)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..64628
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.004"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..97
                     /locus_tag="OQQ19_000253"
     CDS             <1..97
                     /locus_tag="OQQ19_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1802010.1"
                     /translation="RLNAVLDYIDAVAATDTSTAPDVIWPELPEA"
     gene            complement(69..506)
                     /locus_tag="OQQ19_000254"
     CDS             complement(69..506)
                     /locus_tag="OQQ19_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001513774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1802011.1"
                     /translation="MFYSPSLNIFVNPALKDDYINANSWPDDALAVSDDVYNEFAINT
                     PPDDKIRVAGKNGLPTWALIPPPSYEELIQQAESERQLLLNQANEYMNSKQWPGKAAI
                     GRLKGEELAQYNLWLDYLDALELIDTSSAPDIEWPTPPAVQAR"
     gene            complement(508..894)
                     /locus_tag="OQQ19_000255"
     CDS             complement(508..894)
                     /locus_tag="OQQ19_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001537786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1802012.1"
                     /translation="MPVSHYLCIFLNVGLGELSLAGTASGVIGLNGYVTIPLIISGSR
                     RTLIIQWGQARFGGSGGEDAGYLNDFPFAFPSACYGMIVSHVGHTPSGAGILSASAIT
                     SNQFRGFSSIATAANAVLGRYIAIGV"
     gene            925..1491
                     /locus_tag="OQQ19_000256"
     CDS             925..1491
                     /locus_tag="OQQ19_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016529756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS1802013.1"
                     /translation="MLIGYVRVSTNDQNTDLQRNALNCAGCERIFEDKISGTKPDRPG
                     LKKLLRTLSAGDTLVVWKLDRLGRSMRHLVTLIEELRQRGVNFRSLTDSIDTSTPMGR
                     FFFHVMGALAEMERELIVERTRAGLAAARAKGRVGGRRPKLTTEQWAQIGRLLEAGES
                     RQRIALIFDVGVSTIYRKFPANESNESP"
     gene            1634..2806
                     /locus_tag="OQQ19_000257"
     CDS             1634..2806
                     /locus_tag="OQQ19_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath protein"
                     /protein_id="HCS1802014.1"
                     /translation="MAQDYHHGVRVVEVNEGTRSITTVSTAIVGMVCTGDDADAKMFP
                     LNKPVLITDVLTASGKAGESGTLARSLDAIADQAKPVTVVVRVPQGETEEETTTNIIG
                     AVTAEGKKTGMKALLSAQSQLGVKPRILGVPGHDTKAVATELLSVAQSLRGFAYLSAY
                     GCKTVQEAITYRENFSQREGMLIWPDFTGWDTVLNAEATAYATARALGLRAKIDEQTG
                     WHKSLSNVGVNGVTGISADVFWDLQDPATDAGLLNQNDITTLIRKDGFRFWGSRCLSD
                     DPLFAFENYTRTAQVLMDTMAEAHMWAVDKPLNPSLARDIIEGIRAKMRSLVSQGYLI
                     GGDCWLDESVNDKDTLKAGKLTIDYDYTPVPPLENLMLRQRITDQYLVNFSSQVSA"
     gene            2816..3331
                     /locus_tag="OQQ19_000258"
     CDS             2816..3331
                     /locus_tag="OQQ19_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HCS1802015.1"
                     /translation="MALPRKLKHLNLFNDGNNWQGIVESLTLPKFTRKYEKYRGGGMP
                     GAVDVDLGLDDSALDTEFSIGGTELLLFKQMGKATVDGIQLRFTGSIQRDDTGEVQAV
                     ELVVRGRHKEVDSGEWKTGESNTTKVTSTNSYAKLTINGEVLYEVDLINMVEIVDGVD
                     LMEAHRNALGL"
     gene            3386..3688
                     /locus_tag="OQQ19_000259"
     CDS             3386..3688
                     /locus_tag="OQQ19_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HCS1802016.1"
                     /translation="MSDKQTEKTIQLDTPIMRGKTEITEIVLRKPQSGALRGTRLQAI
                     MDMDVNAMMTVIPRISSPALTAQEIAEMDPADLTAMSVEVVTFLLKKSVLAGLPTA"
     gene            3703..3822
                     /locus_tag="OQQ19_000260"
     CDS             3703..3822
                     /locus_tag="OQQ19_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HCS1802017.1"
                     /translation="MADIATIFHWPPSVTDVMPLTEVLEWRDKAIQRSGASHE"
     gene            3815..6892
                     /locus_tag="OQQ19_000261"
     CDS             3815..6892
                     /locus_tag="OQQ19_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001282780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1802018.1"
                     /translation="MSDNNLRLQVILNAVDKLTRPFRSAQASSRELAAAVKKSRDAIK
                     QLDQAGSSLDSFRKLQAENQKLGDRLNYARQRANLLSQELGAMGPPSQRQVVALGRQR
                     LAVQRLEERQKKLQQQTALVRAELYRAGISANDGASATARITRETMRYNRQLSEQEAR
                     LRRVGEQQRKMHAARGAYARRLEVRDRIAGAGATTTAAGLAMGAPVMAAVKSYTSMED
                     AMKGVAKQVNGLRDDNGNRTARFYEMQGAIKAASEQLPMENGAVDFAALVEGGARMNV
                     ANPDDSWEDQKRDLLAFASTAAKAATAFELPADELSESLGKIAQLYKIPTRNIEQLGD
                     ALNYLDDNAMSKGADIIDVMQRLGGVADRLDYRKAAALGSTFLTLGAAPEVAASAANA
                     MVRELSIATMQSKSFFEGMNLLKLNPEVIEKQMTKDAMGTIQRVLEKVNALPQDKRLS
                     AMTMLFGKEFGDDAAKLANNLPELQRQLKLTAGNDALGSMQKESDINKDSLSAQWLLV
                     KTGAQNTFSSLGETLRQPLMDILYTVKSVTGALRRWVEANPELTGTLMKVAAVVAAVT
                     VGLGTLAVALAAVLGPLAVIRLGFSVLGIKTLPSVTATVTRTSNALSWLAGAPLALLR
                     RGLASSGNAAGLLTAPLSSLRRTASLTGNVLKTVAGAPVALLRSGLSGLRAVAVMFMN
                     PLAVLRGGLAATGTVLRMLASGPLAMLRVALYAVSGLLGALLSLIGLVVTALAGVALV
                     VWKYWQPITAFLGGVVEGFKAAAGPVSAAFEPLKPVFQWIGDKVQALWGWFTDLLTPV
                     KSTSAELQSAAAMGRRFGEALAEGLNMVMHPLDSLKSGVSWLLEKLGIVSKEAAKAKL
                     PESVTRQQPATVNADGKVMMPSGGFPSWGYGFAGMYDSGGYIPRGQFGIVGENGPEIV
                     NGPANVTSRRNTAALAAVVAGMMGVAATPAELPPLHPLALPAKGGEAMVSRAATVPPV
                     QRIEAPMQIIIQTQPGQSAQDIAREVARQLDERERRLKAKARSNYSDQGGYDA"
     gene            6889..7374
                     /locus_tag="OQQ19_000262"
     CDS             6889..7374
                     /locus_tag="OQQ19_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1802019.1"
                     /translation="MMMVLGLYVFMLRTVPYQELQYQRSWRHAANSRVNRRPSTQFLG
                     PDNDMLTLSGVLMPEVTGGRLSLLALEQMAEQGKAWPLIEGSGTIYGMYVIEGLNQTK
                     TEFFRDGMPRRIEFTLSLKRVDESLSDMFGDLSAQLNNLQGTATSALSDISKTVGGLL
                     S"
     gene            7371..8471
                     /locus_tag="OQQ19_000263"
     CDS             7371..8471
                     /locus_tag="OQQ19_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HCS1802020.1"
                     /translation="MNFSSELLNKGNKTPAFSISIEGRDITTVLDNRLMGLTLTDNRG
                     FEADQLDLELDDADGKIVLPRRGAVITLALGWKGQPLFPKGAFTVDEIEHTGAPDRLT
                     IRARSADFRETLNTRREKSWHKTTVGEVVKEIAARHKLKMALGEDLSDKLVEHIDQTN
                     ESDGSFLMRLARQYGAIASVKNGNLLFIRQGQGKSASGKPLPVITITRKDGNSHRFTL
                     ADRGAYTGVIASWLHTREPAKKESTTVKRKRRTKKQKKEPEAKQGDYLVGTDENVLVL
                     NRTYANRSNAERAAKMQWERLQRGVASFSLQLAEGRADLYTEMPVKVSGFKQPLDDAE
                     WTITTLTHTVSPDNGFTTSLELEVRIDDFEME"
     gene            8562..8780
                     /locus_tag="OQQ19_000264"
     CDS             8562..8780
                     /locus_tag="OQQ19_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001504085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ogr/Delta-like zinc finger family protein"
                     /protein_id="HCS1802021.1"
                     /translation="MMICPLCGSAAHTRSSFQVSSLTKERYNQCQNINCSHTFVTHET
                     FVRSIATPKESNPVQPHPMKSGQVALSL"
     gene            complement(9016..10701)
                     /locus_tag="OQQ19_000265"
     CDS             complement(9016..10701)
                     /locus_tag="OQQ19_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate:alanine antiporter"
                     /protein_id="HCS1802022.1"
                     /translation="MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVL
                     VVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGS
                     ALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGMESRQLSLALDNLS
                     LGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAY
                     RVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYP
                     DAHARLDPSFRNGKEVFDRDLLDMRIVTEEVVVKNHNAVGKRLAQLKLTDHGCFLNRV
                     IRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFVI
                     GLMIGMITFQFSTFSFGMGNAAGLLFAGIMLGFMRANHPTFGYIPQGALSMVKEFGLM
                     VFMAGVGLSAGSGINNGLGAIGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALLFGA
                     MMGARTCAPAMEIISDTAHSNIPALGYAGTYAIANVLLTLAGTIIVMVWPGLG"
     gene            10971..11348
                     /locus_tag="OQQ19_000266"
     CDS             10971..11348
                     /locus_tag="OQQ19_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YbjM"
                     /protein_id="HCS1802023.1"
                     /translation="MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLF
                     FILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFW
                     CALGALCFLFISSLFKPQHRKNQ"
     gene            complement(11378..11635)
                     /gene="grxA"
                     /locus_tag="OQQ19_000267"
     CDS             complement(11378..11635)
                     /gene="grxA"
                     /locus_tag="OQQ19_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 1"
                     /protein_id="HCS1802024.1"
                     /translation="MQTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGIT
                     KEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAAWVKENLDA"
     gene            11795..12082
                     /locus_tag="OQQ19_000268"
     CDS             11795..12082
                     /locus_tag="OQQ19_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1418 family protein"
                     /protein_id="HCS1802025.1"
                     /translation="MRAIGKLPKGVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEV
                     QILMIFLGVLLMLPAAVVVILQVAKRLAPQLMNRPPQYSRSEREKDNDANH"
     gene            12066..12777
                     /gene="nfsA"
                     /locus_tag="OQQ19_000269"
                     /pseudo
     CDS             12066..12777
                     /gene="nfsA"
                     /locus_tag="OQQ19_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308958.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase NfsA"
     gene            12838..13740
                     /gene="rimK"
                     /locus_tag="OQQ19_000270"
     CDS             12838..13740
                     /gene="rimK"
                     /locus_tag="OQQ19_000270"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6--L-glutamate ligase"
                     /protein_id="HCS1802026.1"
                     /translation="MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPA
                     ASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLR
                     SMQLLARQGIDLPVTGIVHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAA
                     ESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGG
                     AASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASPGLEGIEKTTGI
                     DIAGKMIRWIERYATTEYCLKTGG"
     gene            13828..14304
                     /locus_tag="OQQ19_000271"
     CDS             13828..14304
                     /locus_tag="OQQ19_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjN domain-containing protein"
                     /protein_id="HCS1802027.1"
                     /translation="MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVF
                     DAKIDLIDNTILFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVC
                     QSLSVMQGVTYEQFAWFVRQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH"
     gene            14655..15767
                     /gene="potF"
                     /locus_tag="OQQ19_000272"
     CDS             14655..15767
                     /gene="potF"
                     /locus_tag="OQQ19_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein PotF"
                     /protein_id="HCS1802028.1"
                     /translation="MTALNKKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIAPD
                     TVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLD
                     KSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSW
                     DLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLR
                     PNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAF
                     FDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVSAEVRENPG
                     IYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKSGK"
     gene            15862..16995
                     /gene="potG"
                     /locus_tag="OQQ19_000273"
     CDS             15862..16995
                     /gene="potG"
                     /locus_tag="OQQ19_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000996010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter ATP-binding subunit
                     PotG"
                     /protein_id="HCS1802029.1"
                     /translation="MNDAIPRPQAKTRKALTPLLEIRNLTKSYDGQHAVDDVSLTIYK
                     GEIFALLGASGCGKSTQLRMLAGFEQPSAGQIMLDGVDLSQVPPYLRPINMMFQSYAL
                     FPHMTVEQNIAFGLKQDKLPKAEIASRVHEMLGLVHMQEFAKRKPHQLSGGQRQRVAL
                     ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAG
                     RIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKERHEDGLVLYSPGLV
                     HPLKVDADASVVDNVPVHVALRPEKIMLCEEPPANGCNFAVGEVIHIAYLGDLSVYHV
                     RLKSGQMISAQLQNAHRHRKGLPTWGDEVRLCWEVDSCVVLTV"
     gene            17005..17958
                     /gene="potH"
                     /locus_tag="OQQ19_000274"
     CDS             17005..17958
                     /gene="potH"
                     /locus_tag="OQQ19_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter permease PotH"
                     /protein_id="HCS1802030.1"
                     /translation="MNTLEPAAQSKPPGGFKLWLSQLQMKHGRKLVIALPYIWLILLF
                     LLPFLIVFKISLAEMARAIPPYTELMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQS
                     LQVAAISTFCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKN
                     NGVLNNFLLWLGVIDQPLTILHTNLAVYIGIVYAYVPFMVLPIYTALIRIDYSLVEAA
                     LDLGARPLKTFFTVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQ
                     EFFNNRDWPVAAAVAIIMLLLLIVPIMWFHKHQQKSVGEHG"
     gene            17955..18800
                     /gene="potI"
                     /locus_tag="OQQ19_000275"
     CDS             17955..18800
                     /gene="potI"
                     /locus_tag="OQQ19_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter permease PotI"
                     /protein_id="HCS1802031.1"
                     /translation="MNNLPVVRSPWRIVILLLGFTFLYAPMLMLVIYSFNSSKLVTVW
                     AGWSTRWYGELLRDDAMMSAVGLSLTIAACAATAAAILRTIAAVVLVRFGRFRGSNGF
                     AFMITAPLVMPDVITGLSLLLLFVALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVIS
                     SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFV
                     SGPGATTLPMLVFSSVRMGVNPEINALATLILGAVGIVGFIAWYLMARAEKQRIRDIQ
                     RARHG"
     gene            18860..19348
                     /locus_tag="OQQ19_000276"
     CDS             18860..19348
                     /locus_tag="OQQ19_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjO family protein"
                     /protein_id="HCS1802032.1"
                     /translation="MEDETLGFFKKTSSSHARLNVPALVQVAALAIIMIRGLDVLMIF
                     NTLGVRGIGEFIHRSVQTWSLTLVFLSSLVLVFIEIWCAFSLVKGRRWARWLYLLTQI
                     TAASYLWAASLGYGYPELFSIPGESKREIFHSLMLQKLPDMLILMLLFVPSTSRRFFQ
                     LQ"
     gene            19389..20516
                     /gene="rlmC"
                     /locus_tag="OQQ19_000277"
     CDS             19389..20516
                     /gene="rlmC"
                     /locus_tag="OQQ19_000277"
                     /EC_number="2.1.1.189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(747)-C(5))-methyltransferase
                     RlmC"
                     /protein_id="HCS1802033.1"
                     /translation="MQCALYDAGRCRSCQWITQPIPEQLSAKTADLKNLLADFPVEEW
                     CAPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALK
                     PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSETKLAQLRKALPWLQE
                     QLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVA
                     SQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAA
                     ELGLTRLQFQALDSTQFATAQGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSC
                     NAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVKQ"
     gene            complement(20691..21422)
                     /gene="artJ"
                     /locus_tag="OQQ19_000278"
     CDS             complement(20691..21422)
                     /gene="artJ"
                     /locus_tag="OQQ19_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein ArtJ"
                     /protein_id="HCS1802034.1"
                     /translation="MKKLVLAALLASFTFGASAAEKINFGVSATYPPFESIGANNEIV
                     GFDIDLAKALCKQMQAECTFTNHAFDSLIPSLKFRKYDAVISGMDITPERSKQVSFTT
                     PYYENSAVVIAKKDTYKTFADLKGKRIGMENGTTHQKYIQDQHPEVKTVSYDSYQNAF
                     IDLKNGRIDGVFGDTAVVNEWLKTNPQLGVATEKVTDPQYFGTGLGIAVRPDNKALLE
                     KLNNALAAIKADGTYQKINDQWFPQ"
     gene            complement(21713..22381)
                     /gene="artM"
                     /locus_tag="OQQ19_000279"
     CDS             complement(21713..22381)
                     /gene="artM"
                     /locus_tag="OQQ19_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtM"
                     /protein_id="HCS1802035.1"
                     /translation="MFEYLPELMKGLHTSLTLTVASLIVALILALIFTIILTLKTPVL
                     VWLVRGYITLFTGTPLLVQIFLIYYGPGQFPTLQEYPALWHLLSEPWLCALIALSLNS
                     AAYTTQLFYGAIRAIPEGQWQSCSALGMSKKDTLAILLPYAFKRSLSSYSNEVVLVFK
                     STSLAYTITLMEVMGYSQLLYGRTYDVMVFGAAGIIYLVVNGLLTLMMRLIERKALAF
                     ERRN"
     gene            complement(22381..23097)
                     /gene="artQ"
                     /locus_tag="OQQ19_000280"
     CDS             complement(22381..23097)
                     /gene="artQ"
                     /locus_tag="OQQ19_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtQ"
                     /protein_id="HCS1802036.1"
                     /translation="MNEFFPLASAAGMTVGLAVCALIVGLALAMFFAVWESEKWRPVA
                     WAGSALVTILRGLPEILVVLFIYFGSSQLLLTLSDGFTINLGFVQIPVQMDIENFDVS
                     PFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRH
                     ALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIVAAAIYLVITLL
                     SQYILKRIDLRATRFERRPS"
     gene            complement(23104..23835)
                     /gene="artJ"
                     /locus_tag="OQQ19_000281"
     CDS             complement(23104..23835)
                     /gene="artJ"
                     /locus_tag="OQQ19_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1802037.1"
                     /translation="MKKVLIAALIAGFSLSATAAETIRFATEASYPPFESIDANNQIV
                     GFDVDLAQALCKEIDATCTFSNQAFDSLIPSLKFRRVEAVMAGMDITPEREKQVLFTT
                     PYYDNSALFVGQQGKYTSVDQLKGKKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAK
                     LDLQNGRIDGVFGDTAVVTEWLKDNPKLAAVGDKVTDKDYFGTGLGIAVRQGNTELQQ
                     KLNTALEKVKKDGTYETIYNKWFQK"
     gene            complement(23853..24581)
                     /gene="artP"
                     /locus_tag="OQQ19_000282"
     CDS             complement(23853..24581)
                     /gene="artP"
                     /locus_tag="OQQ19_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter ATP-binding protein
                     ArtP"
                     /protein_id="HCS1802038.1"
                     /translation="MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSL
                     LRVLNLLEMPRSGTLNIAGNHFDFTKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQQN
                     LIEAPCRVLGLSKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEP
                     QVLLFDEPTAALDPEITAQIVSIIRELAETNITQVIVTHEVEVARKTASRVVYMENGH
                     IVEQGDASCFTEPQTEAFKNYLSH"
     gene            complement(24799..25314)
                     /locus_tag="OQQ19_000283"
     CDS             complement(24799..25314)
                     /locus_tag="OQQ19_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1802039.1"
                     /translation="MRYSKLTMLIPCALLLSACTTVTPAYKDNGTRSGPCVEGGPGNV
                     AQQFYDYRILHRSNDITALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPES
                     ARVASASTIPNRDARNIPLRVDLKQGDQSWQDEVLMIQEGQCWVIDDVRYLGGSVHAT
                     AGTLRQSIENR"
     gene            25440..25763
                     /locus_tag="OQQ19_000284"
     CDS             25440..25763
                     /locus_tag="OQQ19_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-binding domain-containing protein"
                     /protein_id="HCS1802040.1"
                     /translation="MQFSTTPTLEGQTIVEYCGVVTGEAILGANIFRDFFAGIRDIVG
                     GRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSMLMVSVSGTA
                     VKTRR"
     gene            25760..26590
                     /gene="amiD"
                     /locus_tag="OQQ19_000285"
     CDS             25760..26590
                     /gene="amiD"
                     /locus_tag="OQQ19_000285"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiD"
                     /protein_id="HCS1802041.1"
                     /translation="MRRVFWLVAAALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRI
                     KVLVIHYTADDFDSSLATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGI
                     SAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKP
                     ENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASL
                     LELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQD
                     "
     gene            complement(26587..27597)
                     /locus_tag="OQQ19_000286"
     CDS             complement(26587..27597)
                     /locus_tag="OQQ19_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415389.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HCS1802042.1"
                     /translation="MKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMG
                     AEFVPADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAV
                     AWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMFSQANPQ
                     TRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLA
                     SQEACDKLPSGRVYNITNGEHRTLCSIVQKLIDELNIDCRIRSVPYPMLDMIARSMER
                     FRKSAKEPPLTHYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAWLRDHGKL
                     PR"
     gene            complement(27696..29126)
                     /locus_tag="OQQ19_000287"
     CDS             complement(27696..29126)
                     /locus_tag="OQQ19_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2867 domain-containing protein"
                     /protein_id="HCS1802043.1"
                     /translation="MPQRILVLGASGYIGQHLVRTLSQQGHQILAAARHVDRLAKLQL
                     ANVSCHKVDLSWPDNLPALLQDIDTVYFLVHSMGEGGDFIAQERQVALNVRDALREVP
                     VKQLIFLSSLQAPPHEQSDHLRARQATADILREANVPVTELRAGIIVGAGSAAFEVMR
                     DMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPASEHRIFEAAGPEVLSYQQQ
                     FEHFMAVSGKRRWLIPIPLPTRWISVWFLNVITSVPPTTARALIQGLKHDLLADDTAL
                     RALIPQRLIAFDDAVRSTLKEEEKLVNSSDWGYDAQAFARWRPEYGYFAKQAGFTVKT
                     SASLAALWQVVNQIGGKERYFFGNILWQTRALMDRAIGHKLAKGRPEREYLQTGDAVD
                     SWKVIVVEPEKQLTLLFGMKAPGLGRLCFSLEDKGDYRTIDVRAFWHPHGMPGLFYWL
                     LMIPAHLFIFRGMAKQIARLAEQSTD"
     gene            complement(29137..30138)
                     /gene="ltaE"
                     /locus_tag="OQQ19_000288"
     CDS             complement(29137..30138)
                     /gene="ltaE"
                     /locus_tag="OQQ19_000288"
                     /EC_number="4.1.2.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low-specificity L-threonine aldolase"
                     /protein_id="HCS1802044.1"
                     /translation="MIDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAA
                     ELSGKEAAIFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLFEAGGAAVLGSIQPQP
                     IDAAADGTLPLDKVAMKIKPDDIHFARTKLLSLENTHNGKVLPREYLKEAWEFTRERN
                     LALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAI
                     RWRKMAGGGMRQSGILAAAGMYALKNNVARLQEDHDNAAWMAEQLREAGADVMRQDTN
                     MLFVRVGEENAAALGEYMKVRNVLINASPIVRLVTHLDVSREQLAEVAAHWRAFLAR"
     gene            complement(30175..31893)
                     /gene="poxB"
                     /locus_tag="OQQ19_000289"
     CDS             complement(30175..31893)
                     /gene="poxB"
                     /locus_tag="OQQ19_000289"
                     /EC_number="1.2.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone-dependent pyruvate dehydrogenase"
                     /protein_id="HCS1802045.1"
                     /translation="MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEW
                     MSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHI
                     PSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLP
                     GDVALKPAPEGATTHWYHAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKE
                     LVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQF
                     PYRAFYPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADRKFLDK
                     ALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLK
                     MNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMK
                     LPVKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVD
                     EALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELA
                     KTNWLR"
     gene            complement(32026..32994)
                     /gene="hcr"
                     /locus_tag="OQQ19_000290"
     CDS             complement(32026..32994)
                     /gene="hcr"
                     /locus_tag="OQQ19_000290"
                     /EC_number="1.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH oxidoreductase"
                     /protein_id="HCS1802046.1"
                     /translation="MTMPTNQCPWRMQVHHITQETPDVWTISLICHDYYPYRAGQYAL
                     VSVRNSAETLRAYTISSTPGVSEYITLTVRRIDDGVGSQWLTRDVKRGDYLWLSDAMG
                     EFTCDDKAEDKFLLLAAGCGVTPIMSMRRWLAKNRPQADVRVIYNVHTPQDVIFADEW
                     RNYPVTLVAENNVTEGFIAGRLTRELLAGVPDLASRTVMTCGPAPYMDWVEQEVKALG
                     VTRFFKEKFFTPVAKAATSGLKFTKLQPAREFYAPVGTTLLEALESNNVPVVAACRAG
                     VCGCCKTKVVSGEYTVSSTMTLTDAEIAEGYVLACSCHPQGDLVLA"
     gene            complement(33006..34658)
                     /gene="hcp"
                     /locus_tag="OQQ19_000291"
                     /gene_synonym="priS"
     CDS             complement(33006..34658)
                     /gene="hcp"
                     /locus_tag="OQQ19_000291"
                     /gene_synonym="priS"
                     /EC_number="1.7.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxylamine reductase"
                     /protein_id="HCS1802047.1"
                     /translation="MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQG
                     LSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQC
                     LAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLK
                     GAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSIL
                     DAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLP
                     AHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVSAYDDRIWTRS
                     IVGWPGVRHLDGDDFSAVITQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVS
                     REKLRHIFLLGGCDGARGERHYFTDFATIVPDDCLILTLACGKYRFNKLEFGDIEGLP
                     RLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVK
                     NIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA"
     gene            complement(34802..35701)
                     /gene="lysO"
                     /locus_tag="OQQ19_000292"
     CDS             complement(34802..35701)
                     /gene="lysO"
                     /locus_tag="OQQ19_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415395.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lysine exporter LysO"
                     /protein_id="HCS1802048.1"
                     /translation="MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFM
                     GISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRI
                     AMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQ
                     IVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFG
                     PVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMV
                     PAAIVHGFILSLLVPILIAFFSA"
     gene            complement(36195..36890)
                     /gene="aqpZ"
                     /locus_tag="OQQ19_000293"
     CDS             complement(36195..36890)
                     /gene="aqpZ"
                     /locus_tag="OQQ19_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HCS1802049.1"
                     /translation="MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFG
                     LTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI
                     ASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATAKFAPAG
                     FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGII
                     GGLIYRTLLEKRD"
     gene            37316..38974
                     /locus_tag="OQQ19_000294"
     CDS             37316..38974
                     /locus_tag="OQQ19_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HCS1802050.1"
                     /translation="MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTL
                     LLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTP
                     CTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLR
                     DARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEH
                     YFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQA
                     KGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVE
                     HVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWV
                     INELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATV
                     RSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAI
                     HRSSKPDLAIEVAIEAGRRGVDSVPTLLKKMFSRVLWLARGRAD"
     gene            complement(38971..39927)
                     /locus_tag="OQQ19_000295"
     CDS             complement(38971..39927)
                     /locus_tag="OQQ19_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001322270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF535 domain-containing protein"
                     /protein_id="HCS1802051.1"
                     /translation="MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQ
                     KFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEAL
                     RYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLKLTMMISMDKEGDSTILF
                     RNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVM
                     EAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHY
                     RLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG"
     gene            40078..41193
                     /gene="macA"
                     /locus_tag="OQQ19_000296"
     CDS             40078..41193
                     /gene="macA"
                     /locus_tag="OQQ19_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308991.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrolide transporter subunit MacA"
                     /protein_id="HCS1802052.1"
                     /translation="MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPG
                     DLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIK
                     EVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQI
                     GTIDAEIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLA
                     DMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYY
                     ARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETR
                     EREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ"
     gene            41190..43136
                     /gene="macB"
                     /locus_tag="OQQ19_000297"
     CDS             41190..43136
                     /gene="macB"
                     /locus_tag="OQQ19_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrolide ABC transporter ATP-binding
                     protein/permease MacB"
                     /protein_id="HCS1802053.1"
                     /translation="MTPLLELKDIRRSYPAGDEQVEVLKGITLDIYAGEMVAIVGASG
                     SGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLT
                     AEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALM
                     NGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHMVIIVTHDPQVAAQAERVIEIRD
                     GEIVRNPPAIEKVNVAGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTM
                     LGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYD
                     DLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQ
                     EQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVL
                     RVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMD
                     GVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARAS
                     DVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTAT
                     GILFGWLPARNAARLDPVDALVRE"
     gene            complement(43209..43433)
                     /gene="cspD"
                     /locus_tag="OQQ19_000298"
     CDS             complement(43209..43433)
                     /gene="cspD"
                     /locus_tag="OQQ19_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock-like protein CspD"
                     /protein_id="HCS1802054.1"
                     /translation="MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKA
                     GQSVQFDVHQGPKGNHASVIVPVEVEAAVA"
     gene            43756..44076
                     /gene="clpS"
                     /locus_tag="OQQ19_000299"
     CDS             43756..44076
                     /gene="clpS"
                     /locus_tag="OQQ19_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HCS1802055.1"
                     /translation="MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVI
                     DVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCT
                     LEKA"
     gene            44107..46383
                     /gene="clpA"
                     /locus_tag="OQQ19_000300"
     CDS             44107..46383
                     /gene="clpA"
                     /locus_tag="OQQ19_000300"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpA"
                     /protein_id="HCS1802056.1"
                     /translation="MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREAL
                     EACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNE
                     VTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSE
                     EQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGV
                     GKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ
                     DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKD
                     RALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR
                     HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLK
                     NLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL
                     SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI
                     EKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDN
                     STDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEV
                     SQEARNWLAEKGYDRAMGARPMARVIQDNLKKTLANELLFGSLVDGGQVTVALDKEKN
                     ELTYGFQSAQKHKAEAAH"
     gene            complement(46727..46814)
                     /locus_tag="OQQ19_000301"
     tRNA            complement(46727..46814)
                     /locus_tag="OQQ19_000301"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(46778..46780),aa:Ser,seq:gga)
     gene            complement(47068..47286)
                     /gene="infA"
                     /locus_tag="OQQ19_000302"
     CDS             complement(47068..47286)
                     /gene="infA"
                     /locus_tag="OQQ19_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HCS1802057.1"
                     /translation="MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNY
                     IRILTGDKVTVELTPYDLSKGRIVFRSR"
     gene            complement(47571..48275)
                     /gene="aat"
                     /locus_tag="OQQ19_000303"
     CDS             complement(47571..48275)
                     /gene="aat"
                     /locus_tag="OQQ19_000303"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HCS1802058.1"
                     /translation="MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQR
                     GIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGC
                     ASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFS
                     RMENASKTALLVFCKEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGR
                     LPNNFWVPRCLFSPQE"
     gene            complement(48317..50038)
                     /gene="cydC"
                     /locus_tag="OQQ19_000304"
     CDS             complement(48317..50038)
                     /gene="cydC"
                     /locus_tag="OQQ19_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter ATP-binding
                     protein/permease CydC"
                     /protein_id="HCS1802059.1"
                     /translation="MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLS
                     ASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSK
                     LLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMMVTIGLSFLDF
                     TLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGA
                     SDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQP
                     GALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVA
                     DRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDP
                     QQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAESL
                     RRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAITRALLHDAPLVLLDEPTEGLDAT
                     TESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRY
                     YQFKQGL"
     gene            complement(50039..51805)
                     /gene="cydD"
                     /locus_tag="OQQ19_000305"
     CDS             complement(50039..51805)
                     /gene="cydD"
                     /locus_tag="OQQ19_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter
                     permease/ATP-binding protein CydD"
                     /protein_id="HCS1802060.1"
                     /translation="MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWF
                     MARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQV
                     LDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFP
                     SNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIF
                     GRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGEL
                     DFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAH
                     PQCGEVELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSL
                     LNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDA
                     SEHELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLL
                     LDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGR
                     YAELSVAGGPFATLLAHRQEEI"
     gene            complement(51928..52893)
                     /gene="trxB"
                     /locus_tag="OQQ19_000306"
     CDS             complement(51928..52893)
                     /gene="trxB"
                     /locus_tag="OQQ19_000306"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HCS1802061.1"
                     /translation="MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL
                     TTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNG
                     EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE
                     EALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGV
                     TGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQ
                     TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK"
     gene            53438..53932
                     /gene="lrp"
                     /locus_tag="OQQ19_000307"
     CDS             53438..53932
                     /gene="lrp"
                     /locus_tag="OQQ19_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001591745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-responsive transcriptional regulator
                     Lrp"
                     /protein_id="HCS1802062.1"
                     /translation="MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTP
                     CLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEE
                     IQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLV
                     IKTR"
     gene            54067..58095
                     /locus_tag="OQQ19_000308"
     CDS             54067..58095
                     /locus_tag="OQQ19_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HCS1802063.1"
                     /translation="MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSF
                     NPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQS
                     SDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHS
                     SGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYE
                     DDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDEE
                     EIIYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWA
                     APVEPVTQTPPVTSVDVPPSQPTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQ
                     YNEPLQQPVQPQQPYYAPAAEQPVQQPYYAPAAEQPVQQPYYATAPEQPAQQPYYAPA
                     PEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPV
                     VEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSAAAVP
                     PVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKR
                     IRVPTRRELASYGIKLPSQRAAEEKAREARRNQYDSGDQYNDDEIDAMQQDELARQFA
                     QTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDF
                     EFSPMKALLDDGPHEPLFTPIVEPVQQPQQLVAPQQQYQQPQQPVAPQQQYQQPQQPV
                     APQPQYQQPQQQVAPQPQYQQPQQPVAPQQQDTLLHPLLMRNGDSRPLHKPTTPLPSL
                     DLLTPPPSEVEPVDTFVLEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGV
                     KAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRD
                     NPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDV
                     RFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNL
                     AGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKK
                     VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD
                     QAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSD
                     SESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEA
                     QGIVSEQGHNGNREVLAPPPFD"
     gene            58250..58861
                     /gene="lolA"
                     /locus_tag="OQQ19_000309"
     CDS             58250..58861
                     /gene="lolA"
                     /locus_tag="OQQ19_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010354356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HCS1802064.1"
                     /translation="MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQK
                     VTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWL
                     KDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQ
                     FSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK"
     gene            58872..60215
                     /gene="rarA"
                     /locus_tag="OQQ19_000310"
                     /gene_synonym="mgsA"
     CDS             58872..60215
                     /gene="rarA"
                     /locus_tag="OQQ19_000310"
                     /gene_synonym="mgsA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein
                     RarA"
                     /protein_id="HCS1802065.1"
                     /translation="MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRA
                     IEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNR
                     NAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
                     LLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMM
                     ADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALY
                     WYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIA
                     QAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYA
                     HDEANAYAAGEVYFPREIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR"
     gene            60306..61598
                     /gene="serS"
                     /locus_tag="OQQ19_000311"
     CDS             60306..61598
                     /gene="serS"
                     /locus_tag="OQQ19_000311"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000887397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HCS1802066.1"
                     /translation="MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKT
                     ENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALT
                     IPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGS
                     RFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLF
                     HTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGR
                     DTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMG
                     FGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSG
                     LAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG"
     gene            61837..64281
                     /gene="dmsA"
                     /locus_tag="OQQ19_000312"
                     /pseudo
     CDS             61837..64281
                     /gene="dmsA"
                     /locus_tag="OQQ19_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415414.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit A"
     gene            64292..>64628
                     /locus_tag="OQQ19_000313"
     CDS             64292..>64628
                     /locus_tag="OQQ19_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HCS1802067.1"
                     /translation="MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPEVSFRRIYEYAG
                     GDWQEDNGVWHQNVFAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGC
                     RYCHMACPYG"
BASE COUNT        15886 a        16216 c        17415 g        15111 t
ORIGIN      
        1 ccgacttaac gccgtgttgg attacattga cgcggtggcg gcaacagata ccagcaccgc
       61 gccggatgtc atctggcctg aactgccgga ggcgtaggcc attcaatatc tggagcactg
      121 gaggtatcaa tcagttccag tgcgtccaga taatccagcc acaaattata ttgcgccagt
      181 tcctcacctt tcagacgacc aatagcggct ttaccgggcc attgtttact gttcatgtat
      241 tcgttggcct gattaagcaa taattgcctt tctgattctg cctgttgaat aagttcttca
      301 tatgatggtg gaggtattag tgcccatgtg ggtaatccat tttttcctgc aacacgaatt
      361 ttgtcatctg ggggcgtatt gattgcaaat tcattataaa catcatcact gacagccaga
      421 gcatcatctg gccatgaatt tgcattaatg taatcatcct taagcgcagg attcacaaaa
      481 atgtttaaag atggactata aaacatatta aacccctata gcgatataac gacctaatac
      541 agcatttgca gcagtcgcta tgcttgaaaa accgcggaac tgatttgatg taattgcaga
      601 agccgacagg attcctgcgc ctgaaggtgt atgccccaca tgactaacta tcatcccata
      661 acatgctgac ggaaaggcaa aaggaaaatc attaagatat cctgcatctt caccaccaga
      721 cccaccaaat ctcgcctgcc cccactgaat aatcagtgtt ctccgggaac ctgaaataat
      781 taacggaatc gttacatacc cattcaggcc aatgacaccc gatgcagtgc cagccagaga
      841 taattctccc aaaccaacgt ttaagaaaat gcagagataa tggctaactg gcatcatccc
      901 cggtttttat tcaggggatt gatcatgctt attggctatg tacgcgtgtc aacaaatgac
      961 cagaacaccg atttgcaacg taatgcactg aactgcgcgg gatgtgagcg gatttttgag
     1021 gataaaatca gtggcactaa gcccgacaga ccggggctta aaaaactgct caggacacta
     1081 tcggcaggag acacgctggt tgtctggaag ctggacagac tgggacgcag tatgcggcat
     1141 cttgttacgc tgatagaaga gttgcgccag cgtggtgtga atttccgaag cctgactgac
     1201 agtattgata ccagtacccc aatgggccgt ttcttttttc acgtcatggg ggctctggct
     1261 gaaatggaac gtgaactgat agttgaacgt accagagcag ggctggctgc agctcgtgcc
     1321 aaaggcagag taggtggacg ccgtcctaag ttgaccaccg aacagtgggc acagattgga
     1381 cgtttactcg aggccggaga atcaagacag cgtattgcac tgatttttga tgtgggcgtt
     1441 tctaccattt atagaaaatt tccggcgaat gagagcaatg aatcgccctg agtcagtatt
     1501 attttgattt ttcctgtaag cggacaaata ccgtcatttt gtgtgaataa cgacacaact
     1561 gcgcttagct gtttgtcagg cacaatcact tcaacatagg gcgaagccta atccaatcag
     1621 gaggttcgcc actatggctc aggattacca ccacggggtg cgcgttgttg aagtcaacga
     1681 aggcacccga tccattacca cggtgagcac cgccatcgtg ggtatggtct gcacgggcga
     1741 tgatgccgat gcaaaaatgt ttcctcttaa taaacctgtg ctgatcactg atgtgctgac
     1801 cgccagcggt aaagcgggtg agtctggcac gctggcccgt tcgctggatg ccatcgctga
     1861 ccaggcaaaa cccgtgaccg ttgttgtgcg tgtgccgcag ggtgaaacgg aagaagaaac
     1921 cacaaccaat atcattggcg cagtgaccgc cgagggtaaa aaaacaggta tgaaagccct
     1981 gttatctgcc cagtcacagc tcggcgttaa accgcgcatt ctcggcgtgc caggtcacga
     2041 cacgaaggcg gtagctactg agttgctgag cgtggcgcaa agcctgcgtg gatttgctta
     2101 cctgtcagcg tatggttgca agacggtgca ggaagcaatc acttaccgtg aaaacttcag
     2161 tcagcgtgaa ggaatgctga tctggcccga ctttactggc tgggacacgg tgctgaatgc
     2221 cgaagcaacg gcttatgcca ccgcccgtgc gctcggtctg cgcgctaaaa ttgatgagca
     2281 gaccggatgg cacaaaagcc tgtccaacgt gggcgtgaac ggtgtcaccg gaatttctgc
     2341 tgatgtgttc tgggatctgc aggacccggc aaccgatgca ggtctgctta accagaacga
     2401 tatcaccacg cttatccgca aagacggttt ccgcttctgg ggttcccgct gtctgagcga
     2461 tgatccgctc tttgccttcg aaaactacac ccgcacggcg caggtgctga tggacacgat
     2521 ggcagaagcg cacatgtggg cggtggacaa accgctgaac ccgtcgctgg cccgcgacat
     2581 tatcgaaggt atccgcgcca aaatgcgtag cctggtcagt cagggctatc tcattggtgg
     2641 tgattgctgg ctggacgagt cggtgaacga taaagacacg ctgaaagccg ggaaactcac
     2701 catcgattac gactacacgc cagtgccgcc acttgaaaac ctgatgctgc gtcagcgcat
     2761 caccgatcag tacctggtga atttctccag ccaggtcagc gcgtaagggg acaacatggc
     2821 tttaccacgc aaattaaaac acctgaacct gtttaacgac gggaacaact ggcaggggat
     2881 cgttgagtcg ctgacgctgc cgaaattcac ccgcaaatat gagaagtatc gcggcggcgg
     2941 tatgcccgga gcggtggatg tggatctggg actggatgac agtgcactgg atacagaatt
     3001 ttccattggt ggtactgaac tgctgctgtt taagcagatg ggcaaagcca cggtggatgg
     3061 catccagctg cgctttaccg gctctattca gcgtgatgat accggggaag tgcaggccgt
     3121 ggagcttgtg gtgcgtggac gtcacaaaga agtagattcc ggcgagtgga agacgggcga
     3181 aagcaacact accaaagtga ccagtaccaa cagctacgcg aagctgacca tcaatggtga
     3241 ggtgctctat gaagtggacc tgatcaacat ggtggaaatt gtggacggtg tggacctgat
     3301 ggaagcgcac cgcaacgccc tcggcctctg atgtatctga acggcgcgga atgccgcgcc
     3361 agaacctaat ttacaggaca acaaaatgag cgataagcag actgaaaaga ccattcaact
     3421 ggatactccc atcatgcgcg gtaaaacaga aattaccgaa attgtgttgc gtaaaccgca
     3481 gtccggtgcg ctgcgcggca cacgcctgca ggccattatg gatatggatg tgaacgcgat
     3541 gatgaccgtg atcccccgca tctccagtcc ggcactgact gcacaggaaa ttgcagagat
     3601 ggacccggca gatctcactg ccatgtcggt tgaggttgtc acttttttgt tgaagaagtc
     3661 ggtgcttgcc ggtttaccga cagcctgacg gttgacgatc tggtggctga tatcgccacc
     3721 atctttcact ggccgccatc cgttactgac gttatgccgc tgaccgaagt gctggaatgg
     3781 cgggataaag cgattcagag aagcggggcc agccatgagt gacaataacc tgcgtctgca
     3841 ggtgattctt aatgcggttg acaaactcac ccgcccattt cgatccgcgc aggccagttc
     3901 aagagaactg gctgctgctg tcaaaaaatc ccgcgatgca ataaagcagc ttgatcaggc
     3961 cgggagcagt ctggacagct tccgaaagct gcaggcagaa aatcagaaat taggcgacag
     4021 gctgaactat gcccgccagc gtgcaaattt gctcagtcag gaactgggag cgatggggcc
     4081 gccttcgcaa cgtcaggttg ttgctctggg ccgtcaacgg ctggctgttc agcgcctaga
     4141 agaacgccag aaaaagctgc agcagcagac ggcgcttgtg cgtgcagaac tttatcgtgc
     4201 tggtatttca gctaatgatg gcgccagtgc gacggcccgc attacccgtg aaacgatgcg
     4261 ttataacagg cagctttctg agcaggaagc gaggttacga cgtgtcgggg agcaacagcg
     4321 aaaaatgcac gccgcccggg gggcttacgc caggcgtctt gaggtaaggg atcgtattgc
     4381 aggtgccgga gccaccacca cggctgcagg gctggcaatg ggcgcaccag tgatggcggc
     4441 agtaaaaagc tataccagca tggaagatgc catgaaaggt gtggcaaagc aggtcaatgg
     4501 tctgcgtgac gataatggca accgcactgc gcgtttttac gaaatgcagg gtgccatcaa
     4561 ggctgccagc gaacagttgc cgatggaaaa cggtgctgtg gacttcgccg cactggttga
     4621 aggtggtgcg cgcatgaacg tcgcaaaccc tgacgacagc tgggaagacc agaaacgtga
     4681 cctgctggcc ttcgccagca cggcggcaaa ggcggcaaca gcctttgaac tgccagcgga
     4741 tgaactgtca gaaagtctgg ggaaaatcgc ccagctctac aaaatcccta cccgcaatat
     4801 tgagcagctc ggtgatgcgc tgaactatct ggatgataac gccatgtcga aaggggcgga
     4861 catcattgat gtcatgcaac gcctgggcgg tgtggctgac cgtctggatt atcgtaaagc
     4921 ggcggcgctg ggttccacct tcctgacact cggcgctgcg cctgaggttg cagccagtgc
     4981 agcaaacgcg atggtgcgtg aattgtccat tgccaccatg caaagcaaga gtttctttga
     5041 agggatgaat ctgctgaaac tcaatccaga agtgattgaa aagcagatga cgaaggatgc
     5101 gatgggaact atccagcggg tgctggagaa ggtgaatgcg ctgccacagg ataagcgcct
     5161 gtctgccatg accatgttgt ttggtaaaga gtttggcgat gacgcagcga aactggcaaa
     5221 caacctgccg gaacttcagc gccagttaaa actgactgcg ggcaatgatg cgctcggttc
     5281 catgcagaaa gaatccgaca tcaacaagga ttcactttct gctcagtggt tgctggtcaa
     5341 aaccggagca cagaacacct tcagcagcct gggggaaacg ctgcgccagc cgctgatgga
     5401 tattctgtac acggtgaaaa gcgtcacggg ggcgttgcgt cgctgggtgg aagctaaccc
     5461 ggaactgacg ggcactctga tgaaagtagc cgctgtggta gctgccgtta ccgtgggcct
     5521 cggcacctta gcggtggcgc tggctgcagt gctggggccg ctggcagtca tccgtctggg
     5581 attctctgtg ctgggtatca aaacgttacc ttccgttacg gcaacagtaa cccgaaccag
     5641 caacgcgttg tcctggctgg ctggcgcacc actggcactg ctgcgacgcg ggcttgcttc
     5701 atcgggcaac gctgcaggtt tacttactgc gccgttgtcg tctttgcgcc gcacggcatc
     5761 actgacggga aatgtcctga aaactgtagc aggtgcgccg gttgcacttt tgcggtctgg
     5821 attatccggt ttacgtgcgg ttgctgtgat gtttatgaat ccactggcgg tactacgcgg
     5881 cggactggct gccacaggca cggtgctgcg tatgctcgca tccggtccac tggcgatgct
     5941 gcgcgttgcc ctgtatgccg tctctggtct gttaggtgct ctgctcagtc tgataggtct
     6001 tgtggttact gcactggcgg gtgtggcgct ggttgtctgg aaatactggc agcccatcac
     6061 cgcatttctc ggtggcgtgg tggaaggatt caaagcggcg gcaggtcctg tcagtgccgc
     6121 gttcgaaccg cttaagcctg tgttccagtg gattggcgac aaagtacagg cgctgtgggg
     6181 ctggtttact gatctgctga cgcccgttaa gtcgacctct gccgaactgc agagtgcagc
     6241 ggcaatgggg cgacgattcg gggaggctct ggcggaaggg ctgaatatgg tcatgcatcc
     6301 gctggactcc ctgaaatccg gcgtttcctg gttgctggag aaacttggca ttgtcagtaa
     6361 agaggccgca aaggcgaaac tgccggaaag cgtgacgcgt cagcaacctg cgacggtgaa
     6421 tgcagacggt aaagtgatga tgccatcggg tggttttccg tcatggggat atggctttgc
     6481 ggggatgtat gacagcggcg ggtatatccc gcgcgggcag tttggcatcg tcggtgaaaa
     6541 cgggccggaa attgttaacg gcccggcaaa tgtgaccagc cggagaaata cagctgcact
     6601 ggctgccgtt gttgccggaa tgatgggtgt tgctgctacg ccagcagagc ttccaccgtt
     6661 gcaccctttg gcacttcccg cgaaaggcgg tgaagcgatg gtgagtcgtg cagccactgt
     6721 gccgcccgtt caacggattg aggcaccgat gcagatcatc attcaaacgc agccaggaca
     6781 aagtgcgcag gatattgcgc gggaggtggc ccgccagctt gatgaacgtg aacgcaggct
     6841 gaaggcaaaa gccaggagta actacagcga tcagggggga tacgacgcat gatgatggtg
     6901 ctgggattgt acgtgtttat gctgcgcacc gtgccgtatc aggagctgca gtatcaacgc
     6961 agctggcgac atgcggcaaa cagccgggta aaccgacgcc cgtcaacgca gtttctggga
     7021 ccggacaacg acatgctgac gctttctggt gttcttatgc cggaggtaac gggcggcagg
     7081 ctgtcgttgc tggctctgga gcagatggca gaacagggaa aagcatggcc cctgattgaa
     7141 ggcagcggca cgatttacgg catgtatgtg attgagggac tgaatcagac taaaacggag
     7201 tttttccgcg acggtatgcc gcgccggatt gagttcaccc tgtcgctaaa acgcgtggat
     7261 gaatccctgt ccgatatgtt cggtgatctc agtgcgcaac tgaataatct gcagggaacg
     7321 gcaacatctg ccttaagcga tatcagtaaa acggtgggag ggctgctgtc gtgaatttca
     7381 gctctgaact gcttaacaaa ggcaacaaaa ctccggcatt cagcatcagt attgaaggca
     7441 gggatatcac cactgtgctg gacaaccgcc tgatggggct gacgctgacg gataaccggg
     7501 gctttgaagc ggaccagctt gatctggagc tggacgacgc cgatggaaaa atcgtgctgc
     7561 cgcgccgtgg ggctgtcatt acgctggcgc tgggctggaa gggacagccg cttttcccga
     7621 aaggggcatt cacggtggac gagattgaac acactggcgc accggatcgc ctgactatcc
     7681 gggcgcgaag tgctgatttt cgtgaaacgc tgaatacccg ccgtgaaaag tcgtggcaca
     7741 agaccaccgt tggggaagtg gtgaaggaaa tagctgcgcg gcacaaactg aagatggcat
     7801 tgggtgaaga cttgtcggat aaactcgtgg agcatataga ccagactaat gagagtgacg
     7861 gcagtttttt gatgcggctg gcgcgccagt acggtgctat tgcgtcggtg aaaaatggca
     7921 atctgttatt catccggcag gggcagggta aaagcgccag cggtaaacca ctaccggtga
     7981 tcactatcac acgcaaggac ggcaacagtc accgctttac cctggcagat cgcggagctt
     8041 acacgggcgt cattgccagc tggttgcata cccgcgaacc cgcgaagaaa gaaagcacca
     8101 cggtgaagcg taagcgcagg actaagaagc agaagaaaga gccggaagcg aagcagggcg
     8161 attacctggt gggtacggat gaaaacgtgc tggtacttaa tcgcacttat gccaaccgga
     8221 gcaacgccga acgggcagcg aaaatgcagt gggaacgcct gcaacgcggc gttgcatcat
     8281 tctcgctaca actggcggaa gggcgggcag atctctacac agaaatgcct gtgaaggtca
     8341 gtggctttaa acagccgcta gatgatgcgg aatggaccat tacgactctg acgcatactg
     8401 tcagcccgga taacggtttt acgaccagtc tggagcttga agtgaggatt gatgatttcg
     8461 aaatggaatg attcttcgca atggagaact tttaagtttg caaagtggaa taatgcggta
     8521 tcattattgt gaatttagca aaaatgggga gagctcgaaa aatgatgatt tgcccactgt
     8581 gtggaagtgc cgcccatact cgcagcagtt ttcaggtatc ttcattgacc aaagagcgtt
     8641 acaaccagtg ccagaacatt aactgcagcc atacttttgt tacccatgaa acttttgttc
     8701 gttcgattgc aacgccaaaa gagtcaaatc cggttcagcc gcatccaatg aaatcaggac
     8761 aggtggcgct ctctctttga cgctgccgcc attttgtcgc catcgttaaa aaacagtgct
     8821 tctaacatca tgattttaaa aggcataaat ttcagacaac aaaaaaccca tcaaccttga
     8881 accgaaatgg cggggttgat gggctccaca aaatggggac atcaaagaaa agcagtggca
     8941 ctaattaaga ctgatgccct gcggaaaagt tctgcggttg tgcaaaaaaa tttcattttc
     9001 agggcaactt cagttttatc ctaatcctgg ccataccatg acgatgattg tccctgccag
     9061 cgtcagcagg acgttggcga ttgcgtaggt gcccgcatag cccagcgcag ggatgttact
     9121 gtgagctgta tcactgatga tctccattgc cggcgcgcag gtgcgtgcgc ccatcattgc
     9181 gccgaacaac agtgcgcggt tcattcgcaa tacataagca ccgaacaaga aacagataac
     9241 cacgggcaca agactgacaa ttaatccggc aatcaacatc tgaccgccaa tcgcgcccag
     9301 gccgttatta ataccgctac cggcgctcag accaacgcct gccataaaca ccatcaagcc
     9361 gaactctttc accatgctta atgcaccttg cggaatgtaa ccgaaggtcg ggtggttagc
     9421 acgcataaag cccagcataa ttccggcgaa taacaacccg gcagcgttcc ccatgccgaa
     9481 actgaatgtg ctgaactgga aggtgatcat cccgatcatc agcccaataa caaagaaggc
     9541 gcaaaatgcc agcaggtcag tgacctggct gtgaatcgag ataaagccga tgcgatcggc
     9601 gatggttttt acgcgacggg catcaccgct gacttgtaaa acgtcacctt tgttaagcac
     9661 gacgttgtca tctatcggca tctcaatctg gctacgaatg acgcggttaa ggaagcaacc
     9721 gtgatcggtc aacttcagtt gtgcgagacg tttacctaca gcgttatggt ttttaacgac
     9781 cacttcttca gtgacgatac gcatgtcgag aaggtcacga tcgaaaactt ctttaccgtt
     9841 acggaagctg ggatcgagtc gggcatgggc gtcgggatag cctaccaacg ctatttcatc
     9901 gcccatttgt agcacggcat caccgtctgg atttgccaga atcccgttac gtcgaatacg
     9961 ttcaatgtag cagccggttt gtcgataaat acccagttca cgcagatttt tgccgtcggt
    10021 ccaggccacc agctccgggc cgacgcgata ggcgcggatc accggtaaat aaaccttacg
    10081 gttggcatca gtgtccaggc cacgttcgcg ggcgatttgc tgggcgctgg tctgtaagtc
    10141 ctgatgctgc aatttcggca agtaacgcgc accaacaatc aaactcacca gaccgattaa
    10201 ataggttaag gcatacccga ggctcagatt atccagtgcc agtgagagct gcctgctttc
    10261 catgccggaa tgacgcagtg tatcgccagc accgaccaga accggtgtcg acgtcataga
    10321 gcctgctaac ataccggccg tcaggccaat atcccagcca aacagcttac ctaaccctaa
    10381 ggcgatcacc agcgcactgc caaccatcac cagtgctaac attaggtaat ttttcccatc
    10441 gcgaaaaaaa atggaaaaaa agttcggtcc ggcttcgacc ccgacgcaga aaataaacag
    10501 cataaagcca agattaagcg catcggtgtt aatgctgaaa tgttgttggc ctaataacag
    10561 cgatacgact aaaacgccaa tggaattacc cagttggatc gaaccaagtc gtaactttcc
    10621 gagacatagc ccaagcgcga ggaccacaaa taataacaga atgtaattcc catttaacaa
    10681 ttcggcgacg tttatattca cggaggctaa cttcttgttt actagtaagc tgttgaaaga
    10741 aatggtaatt tacgataatg ttttttacca gaattcaggg cgcagattca ttcagcgcac
    10801 ctaaacgata gtaaagtaac aatatatttt actagtgtaa tcacattagg tatcaacggc
    10861 tatatgaatt gcgttggcct atattagcat ggaatgcgaa gcggctttat cttactgaac
    10921 gccacactgg cgaaaaatgt gttcgataga cgcagtgtca ggaggaacga gtgaaacata
    10981 aacaacgttg ggcgggggca atctgctgtt ttgtcctctt cattgtggtg tgcctttttc
    11041 tggcgacgca catgaaaggc gcttttcggg ctgccgggca tcctgaaatc ggcttgctgt
    11101 ttttcattct tcctggagca gttgccagtt tcttttcaca gcgtagagaa gtcctgaaac
    11161 ctctatttgg cgcaatgctg gcggcaccct gttcaatgct cattatgcgg ctgttttttt
    11221 caccgacgcg ctcattctgg caagagctgg catggttact aagcgcggtg ttctggtgtg
    11281 cgctgggggc actgtgtttc ttatttatca gtagtttgtt taaaccacag cacagaaaaa
    11341 atcagtaaag ccctcaacgc gagggcttgt cagacgatca ggcgtccaga ttttctttca
    11401 cccatgcagc aaaatcggta tagccgccga tatgttgctg atcgacaaaa atctgcggca
    11461 cggtttctac gggtttacct gccttttgtt gtagatcttc tttagtgatc ccttccgcac
    11521 gaatatctac atactgatac tgaaaatcat cgcgttcatt gctcaatttc tcagccagat
    11581 cttttgcacg cacacagtaa gggcaacccg aacgaccaaa aataacggtt tgcattattt
    11641 ctctcctcat agatttatgc ctgtaatgat cacgctaaaa tgtattcgct gaaagtaggt
    11701 ttaacctgtt gcattaattg ctaaaagcta taactgttaa acacaataca gtgaaaagtt
    11761 ttagactgaa ggctcacttt gcagagggaa gcgtatgcgc gcgatcggta aattgcctaa
    11821 aggcgtgttg atactggaat ttatcggaat gatgctactg gcggtggcgc tgctgtcggt
    11881 aagcgactcc ctgtcgctgc ctgagccatt ttctcggcca gaagtgcaga ttctgatgat
    11941 ttttctcggt gttttgctca tgcttcccgc tgcggtggtg gttattcttc aggtggcaaa
    12001 acgtcttgcc ccacagctga tgaaccgtcc accgcaatat tcacgttcag aaagagaaaa
    12061 agataatgac gccaaccatt gaacttattt gtggccatcg ctccattcgc catttcactg
    12121 atgaacccat ttccgaagcg cagtgtgagg cgattattaa cagcgcccgt gcgacgtcca
    12181 gttccagttt tttgcagtgt agtagcatta ttcgcattac cgacaaagca ttacgtgaag
    12241 aactggtgac gctgaccggc gggcaaaaac acgtagcgca agcggcggag ttctgggtgt
    12301 tctgtgccga ctttaaccgc catttacaga tctgtccgga tgctcagctc ggcctggcgg
    12361 aacaactgtt gctcggtgtc gttgatacgg caatgatggc gcagaatgca ttaaccgcag
    12421 cggaatcgct gggattgggc ggggtatata tcggcggcct gcgcaataat attgaagcgg
    12481 tgacgaaact gctgaaatta ccgcagcatg ttctgccgct gtttgggctg tgccttggct
    12541 ggcctgcgga taatccggat ctcaagccgc gtttaccggc ctccattttg gtgcatgaaa
    12601 acagctatca accgctggat aaagacgcac tggcgcagta tgacgagcaa ctggcggacc
    12661 cgtggcagca ataatcgccg ggatacctgg agcgatcata tccgccgaac aatcattaaa
    12721 gaaagccgcc catttattct ggattatttg cacaaacagg gttgggcgac gcgctaaaac
    12781 cgccacgtcg atgtatgata cgcgggcttt tgaccaggtc tgacagagag gtgcagggtg
    12841 aaaattgcca tattgtcccg ggatggaacg ctctattcgt gtaagcggct gcgtgaagcc
    12901 gctatacagc gcggtcacct ggttgaaatt cttgatccgc tttcttgcta catgaacata
    12961 aatcctgcgg cgtcttctat tcactacaaa ggccgcaagt taccccattt tgacgcagtg
    13021 atcccgcgta ttggcaccgc cattaccttt tatgggacgg cggcactgcg ccagttcgag
    13081 atgctgggga gctatccgct caatgagtcg gtcgccattg cccgggcgcg tgacaaattg
    13141 cgttccatgc aactgctggc gcgtcagggc atcgacctgc ctgtcacggg cattgtgcat
    13201 tcgccggatg ataccagcga tttaatcgac atggtcggtg gtgcgccgct ggtggtcaag
    13261 ttggttgaag gcacgcaggg aattggcgtc gtgctggcgg agacgcgtca ggcggcggaa
    13321 agcgtgattg acgctttccg cggtctgaac gcgcatattc tggtgcagga atatatcaaa
    13381 gaggcgcaag ggtgcgatat ccgctgtctg gttgttggcg atgaagtggt cgctgcgatt
    13441 gaacggcggg cgaaagaggg cgattttcgt tccaatttgc atcgtggcgg cgcggcaagc
    13501 gtcgccagta tcacaccaca ggagcgtgaa atcgcgataa aagccgcgcg aacgatggcg
    13561 ctggacgttg ctggtgtgga tattctgcgt gctaatcgcg ggccgttggt gatggaagtg
    13621 aatgcgtcgc cggggctgga aggaatagaa aaaaccactg gtatcgacat cgcgggtaaa
    13681 atgatccgct ggatcgaacg ctacgctacg acagaatatt gcctgaaaac gggtggttag
    13741 tcgcaatcac attactgatc atggttttgc ctgcgctttt tgcgtaagct gtgccggtct
    13801 ttttatcgaa agaggttgta caaaattatg acatcgctgg tcgttcctgg tctggatacg
    13861 ctgcgtcaat ggctcgatga cctggggatg agtttttttg aatgtgataa ctgtcaggct
    13921 ctgcatctgc cccatatgca gaatttcgac ggtgtctttg atgccaaaat cgatctgatc
    13981 gataacacga tcctgttttc tgccatggcg gaagtccgac cttcagccgt attgccgctg
    14041 gcggcggatt tatctgccat caatgccagt tcgctgaccg tgaaagcatt tcttgatatg
    14101 caggatgata atctgccaaa gctggtggtt tgccagtctt tatccgttat gcagggcgta
    14161 acctacgagc agtttgcatg gttcgtgcgt cagagcgaag agcagatttc gatggtcatt
    14221 cttgaagcta atgcccatca actgctgtta ccgactgacg atgaagggca aaacaacgtt
    14281 accgaaaact atttcctcca ctgataactc ctttcgagca cgcagtcgct ggtgcagtga
    14341 ctgcgcactg caaaattatc tgctgttttt aaccttttct taaagattat ttcacttctc
    14401 ttgtgccgat ttggctttat cacatagagc aaatacgcat aacaatttgt taaataccgt
    14461 tttttaatcc gagctatagt ctcaaaccct ggctaaagtt attcttgcga tgcttttata
    14521 tagcgagcag tgctggccgg gagagagtta tcttttctta caccgcgccg ataaaaaata
    14581 tgcacgttta ttgcatatct tttagtatga caacttttgt tcgtttgtta acgaactttc
    14641 agaaggaaag agatatgacc gccttaaata aaaaatggct ttcgggtctg gttgcgggtg
    14701 ctctgatggc cgtctctgtc ggcacgctcg cggctgaaca aaaaacactc cacatttata
    14761 actggtctga ttatatcgcc cctgacacgg tggccaattt tgaaaaagaa accggtatta
    14821 aagtcgtcta cgatgttttc gactctaacg aagtactgga aggcaaatta atggcgggta
    14881 gcaccggctt tgacttggtg gttccatctg ccagctttct tgaacgccag ttgactgcgg
    14941 gagttttcca gccgctggac aaaagcaaat tgccggagtg gaagaatctc gacccggagc
    15001 tgctgaagct ggtcgccaaa cacgatcccg acaataaatt tgctatgccc tatatgtggg
    15061 cgacgaccgg gattggctat aacgttgata aagttaaagc tgtgctgggc gaaaacgcgc
    15121 ccgtcgatag ctgggacttg atcctcaaac ctgaaaatct ggaaaaactg aaaagctgcg
    15181 gtgtctcttt cctggatgcg ccagaagaag tttttgctac cgtgttgaat tatctcggca
    15241 aagatcccaa cagcactaaa gcggatgatt acaccggacc ggcaaccgat ctgctgttaa
    15301 agctgcgccc gaacattcgt tatttccatt catctcaata cattaacgac ctggcaaacg
    15361 gcgatatttg cgtcgctatc ggctgggcag gtgatgtctg gcaggcgtca aaccgcgcga
    15421 aggaagcgaa gaatggagtg aatgtctcgt tctcgattcc aaaagaaggg gcgatggcgt
    15481 tctttgatgt attcgccatg cctgcggatg ccaaaaacaa agacgaagcc tatcagttcc
    15541 tgaattacct gctgcgcccg gatgtagtag cgcatatttc cgaccatgtg ttctatgcca
    15601 acgccaataa agcagccacg ccgctggtga gtgcggaagt ccgtgagaac ccgggtattt
    15661 atcctccggc ggacgttcgt gcgaagctat tcactctgaa agtacaggat ccgaaaatcg
    15721 accgtgtgcg cacccgcgcg tggaccaaag tgaagagcgg aaaataatcc gcagccttag
    15781 atgccgggcg ggcgcaccac acccgccggc aattcgcacc atcatggtgc gcttgcacac
    15841 attcaatgcc ggagagcagc cgtgaatgac gctatccctc gcccgcaggc gaaaacccgt
    15901 aaggcgctga cgccgctatt agaaatccgc aacctcacca aatcctacga tggtcagcat
    15961 gcggtcgatg atgtcagcct gaccatctac aaaggtgaaa tcttcgcgct gctgggcgct
    16021 tccggctgtg gcaagtccac gcagctgcgt atgctggcag gttttgaaca accttctgcc
    16081 gggcagataa tgctcgatgg cgtcgatttg tcacaggtgc cgccttacct gcgccccatc
    16141 aatatgatgt ttcagtctta cgcgctgttt ccgcatatga ccgtggaaca gaacatcgct
    16201 tttggcctga aacaggacaa actaccgaaa gcggaaattg ccagtcgggt ccatgagatg
    16261 ctcggcctgg tgcacatgca ggagttcgcc aaacgcaaac cgcatcagct ttccggtggt
    16321 cagcgacagc gtgtggcgct ggcccgaagc cttgccaagc gcccgaaact attactgctc
    16381 gacgagccga tgggcgcgct ggataaaaag ctgcgtgacc ggatgcagct tgaagtggtg
    16441 gatattctgg agcgtgtcgg cgtgacctgt gtgatggtca ctcacgatca ggaagaggcg
    16501 atgacgatgg cgggacgtat cgccattatg aatcgcggga aatttgtcca gattggcgag
    16561 ccagaagaga tctacgaaca tccaaccacc cgctacagtg ctgaatttat cggttcggtt
    16621 aatgtctttg aaggtgtact caaagagcgt catgaggatg ggcttgtgct ttattcgcct
    16681 gggctggtgc atccactgaa agtcgacgcg gatgcctcgg tggtcgataa cgtgccggta
    16741 catgtggcgc tgcgcccgga aaaaatcatg ctttgcgaag agccgcccgc caatggttgt
    16801 aacttcgcgg tgggggaggt gatacacatt gcctatctcg gcgatctttc ggtgtatcac
    16861 gttcgtctga aaagtgggca gatgattagc gcccagctac aaaacgccca tcgtcatcgt
    16921 aaagggttac cgacctgggg cgacgaagtg cgtttgtgct gggaagtgga cagctgtgtg
    16981 gtgctgacgg tttaaggagc aaagatgaat acacttgaac ctgctgccca gtcgaaaccg
    17041 ccgggcggat ttaagctgtg gttgtcgcag ctgcaaatga agcatgggcg caaactggtc
    17101 attgcgttgc catatatctg gttgatcttg ctgtttctgc tgccatttct gattgtcttt
    17161 aaaataagcc tggcggagat ggcgcgcgct attccacctt ataccgaact gatggagtgg
    17221 gctgacgggc aactgtccat cactcttaat ctcggtaatt ttctgcaact gaccgacgat
    17281 ccgctctatt tcgatgctta tctccagtcg ctacaggtgg ctgcgatttc gacattttgc
    17341 tgtttactga tcggctatcc gctggcgtgg gcggtggcgc acagtaagcc ttcgacccgt
    17401 aatattttat tactactggt gatcctgccg tcgtggacct cgtttctgat ccgcgtttat
    17461 gcctggatgg gaatattaaa aaacaacggt gtgctgaata attttctgct gtggctgggg
    17521 gttatcgatc aaccgctgac cattcttcat accaatctgg cagtttatat tggcattgtt
    17581 tacgcctacg tgccgtttat ggtgctgccg atttataccg cgttgattcg tattgattat
    17641 tcgctagtgg aagcagcgct ggatctcggt gcacgaccgc tgaaaacgtt ctttactgtg
    17701 atcgtgccgc tgactaaagg tgggattatt gccggatcga tgctggtgtt tatcccggct
    17761 gtgggcgagt ttgtgatccc ggaactgctc ggtggcccgg acagcatcat gatcgggcgc
    17821 gtgctatggc aagagttttt caataaccgc gactggccgg tggccgcggc ggtagcgatc
    17881 atcatgttgc tgctgctaat tgtgccgata atgtggttcc acaaacacca gcaaaaaagc
    17941 gtgggagaac acggatgaat aatttaccgg tagttcgttc gccctggcgg attgtgattt
    18001 tgctgctggg ctttaccttt ctctacgcgc caatgctgat gctggttatc tattcgttta
    18061 acagctcgaa gctggtgacg gtgtgggccg gctggtcaac gcgctggtat ggtgagttat
    18121 tgcgcgatga cgcgatgatg agtgcggttg gtttaagcct gacaattgct gcctgtgcgg
    18181 caacggcggc ggcgatcctc aggactattg cggcggtggt gctggtgcgc tttggcaggt
    18241 ttcgcggatc aaatggcttt gcctttatga tcacagcgcc gctggtaatg ccagatgtca
    18301 tcacgggctt gtcgctgttg ttattattcg tcgcgcttgc tcatgccatt ggctggcctg
    18361 cggaccgcgg tatgcttacc atctggctgg cgcatgtcac tttctgtacg gcttatgtgg
    18421 cggtcgttat ttcgtcgcgt ctgcgggaac tggatcgctc gatagaagaa gcagcgatgg
    18481 atctcggtgc gacgccgctg aaagtgtttt tcgtcattac gctaccgatg atcatgcctg
    18541 cgatcatttc tggctggtta ctggctttta ctttgtcgct tgatgatctg gtgatcgcca
    18601 gctttgtttc cgggccggga gccaccacgt taccgatgct ggtcttttcc agcgtgcgga
    18661 tgggggtgaa tccggaaatc aacgcccttg caacgttaat tctcggtgcg gtcggaattg
    18721 tcggatttat cgcctggtat ctgatggctc gcgcagaaaa acagcggata cgcgatatcc
    18781 agcgtgcaag acatggctga agacactaaa atttgccaac ctggctacat aatgccgcgc
    18841 atgccgcggc attgttttca tggaagacga aacgttggga ttttttaaga aaacatcttc
    18901 atctcatgct cgcctgaatg tgcctgcgct ggtgcaggta gcggcgctcg ccattattat
    18961 gatccgtggc ctcgacgtgc tgatgatttt caatacgctg ggcgtgcgcg gtattggcga
    19021 gttcattcat cgcagcgtac aaacctggag cttaacgctg gtatttttaa gcagtctggt
    19081 gctggttttt atcgagatct ggtgtgcgtt ttcactggtg aaagggcgtc gctgggcgcg
    19141 ctggctatat ctgctgacac aaatcaccgc cgcaagttac ttgtgggcgg cttcgctggg
    19201 gtatggttat ccggagctgt tcagcattcc cggtgaatca aaacgtgaaa tcttccatag
    19261 cctgatgctg cagaagctgc cggatatgct catcctgatg ctgctgttcg ttccctcgac
    19321 cagtcggcgg ttcttccagt tgcaataatg tgtataatcg tcgcccctga tgatgtgaag
    19381 gtcaatgtat gcagtgcgca ctttacgacg cgggtcgctg tcgttcctgt cagtggataa
    19441 cgcagccgat tccagagcaa ctctccgcta aaaccgccga tcttaaaaat ctgctcgccg
    19501 attttccggt tgaggaatgg tgcgcgccgg tgtcaggccc ggaacaaggg tttcgtaata
    19561 aagccaaaat ggtggtgagt ggtagcgttg aaaaaccact gctcggtatg ctgcatcgcg
    19621 atggcacgcc ggaagacctt tgtgactgcc cgctttatcc tgcctctttt gcgcccgttt
    19681 ttgcggcgct aaaaccgttt atcgcccgtg cggggttaac gccctacaac gtggcgcgta
    19741 agcgtggcga actgaaatac attctgctga ctgaaagcca gagcgatggc ggcatgatgc
    19801 tgcgctttgt actgcgttct gaaaccaaac tggcacaact gcgtaaggcg ctgccgtggt
    19861 tacaggaaca actaccgcaa ctgaaagtta ttaccgtcaa tattcagccg gtacatatgg
    19921 cgattatgga aggggagacg gagatctacc tgactgaaca acaggcgctg gcagagcgtt
    19981 ttaatgacgt accgctgtgg atccgtccgc aaagtttctt ccagactaat ccggcggtcg
    20041 ccagccagct gtacgctacc gcgcgcgact gggtacggca gctgccagtt aaacatatgt
    20101 gggatctgtt ctgcggtgtg gggggctttg gtttacactg cgcgacgcct gacatgcagt
    20161 taaccgggat cgaaattgcg ccagaggcca ttgcctgtgc aaagcagtca gccgctgaac
    20221 tgggcttaac tcgtttacaa tttcaggcgc tggactccac tcagtttgcc actgctcagg
    20281 gggaggtgcc ggagctggtg ctggttaacc cgccgcgccg cggcattggt aaaccgctgt
    20341 gtgattatct ctcaacgatg gcaccgcgtt ttatcatcta ctccagctgt aacgcccaaa
    20401 ctatggcgaa agatatccgc gaactgcctg ggtttcgcat cgaacgggta cagctttttg
    20461 atatgttccc gcacaccgcg cactatgaag tgctgacgct gctggtgaag caataaaaaa
    20521 gccgcaggtg cggcttcaga ttgctgatca ggtgcgcttt gttcatgccg gatgcggcgt
    20581 gtacgcctta tccggcctac aaaatcatgc taaatcaata cattgcagag ttgatgtggg
    20641 ccagataagc gcagcgcatc aggcaatctt acttttgtca tcagtctcaa ttactgcggg
    20701 aaccactggt cattgatttt ctgatatgta ccgtcagctt taattgctgc cagcgcgtta
    20761 ttcagttttt ccagcagagc tttgttatcc ggacgtacag cgatgcccag accggtgccg
    20821 aagtattgcg gatcggtcac tttttcagta gcaacgccca gttgcggatt ggttttcagc
    20881 cattcgttta ccaccgctgt gtcaccaaat accccatcaa tacgaccatt tttcagatcg
    20941 ataaaggcat tctgataact gtcataggag acagttttca cttcggggtg ctgatcctga
    21001 atatatttct ggtgcgtggt gccgttttcc atcccaatac gtttgccttt cagatcggca
    21061 aacgttttgt aggtatcttt tttggcaatc acgacggctg agttttcata gtagggcgtg
    21121 gtaaacgata cctgcttgct acgctcgggc gtgatatcca taccggagat tacggcgtca
    21181 tattttctga atttcagtga cgggatcagg ctgtcgaacg cgtgattagt aaaagtacat
    21241 tctgcctgca tttgtttgca caaggctttt gccagatcga tatcaaagcc gacaatctca
    21301 ttattagcac ctatagattc aaagggtgga taggtggctg aaacgccaaa attgattttc
    21361 tctgcggcag aagcaccgaa agtaaaggaa gcaagtaaag cggcaagaac taactttttc
    21421 atgatggaac tcccgtctgt caatcttatg atttttggcc gtgtctgcgg catgggataa
    21481 caatgccatc aagtgaattt atatgcaata aatatgatta aataatttaa atgaaataaa
    21541 aaacgacgga taacttagtg agttgtccgt cttcattata agaatttatg cactatgtag
    21601 gccggataag gcgtccacgc cgcatccggc acaggcaccg tgctgatgtc tgatgcgacg
    21661 ctggcgcgtc ttatcagacc tacaaacccc ccggcgaatg tacgcagcta cattaattcc
    21721 gccgttcgaa tgccagtgct ttgcgctcga tcagacgcat catcagcgtc agcaggccgt
    21781 tgacgaccag gtaaataatc cctgccgcac cgaacaccat tacatcgtag gtgcgtccgt
    21841 acaacaactg gctgtatccc atcacttcca tcagcgtaat ggtgtaagcc agagaggtac
    21901 ttttgaacac cagcaccact tcgttggaat aagaagagag cgagcgttta aaggcatacg
    21961 gcagcaggat cgccagcgta tcttttttgc tcattcccag ggcgctacag gactgccact
    22021 gaccttctgg gatcgcacga attgcaccgt aaaacagctg cgtggtatac gccgcactgt
    22081 tcagcgataa cgcaatcagc gcacataacc acggttctga caacaaatgc cacagtgccg
    22141 gatactcctg caaagtcgga aactggcccg gcccgtaata aatcaggaag atctgcacca
    22201 gcagcggcgt accggtaaac agcgtgatat aaccccgcac cagccacacc agcaccggcg
    22261 ttttcagcgt caggatgatg gtaaaaatca atgccagaat cagtgccaca atcagcgagg
    22321 caacggttag cgtcaggctg gtgtgtagcc ctttcatcag ttcgggtaaa tactcaaaca
    22381 ttagctgggc ctccgctcaa aacgtgtcgc gcgcaggtca atgcgtttga gaatgtactg
    22441 actgagcagg gtgatcacca ggtaaatcgc cgccgccaca atataccagg taaatggttc
    22501 ctgggtacga gtagcgatgc tttttgtttg cagcattaaa tcattcacac taatcaaact
    22561 gaccagcgcg gtatctttca gcagcaccag ccactggtta ccgaggccag gcagcgcatg
    22621 acgccacatc tgcggcatca ccagacggaa aaagatagcc gatttcgaca gccccagcgc
    22681 ctgaccagac tcccactgac ccaccggcac cgctttcaac gcgccccgaa gcgtttgcga
    22741 ggcataggcg gcatacagca gtgacagagc gatgacacca caaaggaacg ggctaacgtc
    22801 gaagttctca atgtccatct gcactgggat ctgcacgaac ccaagattga tagtgaagcc
    22861 atccgaaagc gtcagcagca gctgcgagga gccaaaatag ataaacagca ccaccagaat
    22921 ttctggcagg ccacgcagaa tggttaccag cgctgaacct gcccacgcga caggacgcca
    22981 tttttccgac tcccataccg caaagaacat cgccagcgcc agcccgacaa tcaatgcaca
    23041 aacggcaagg ccgacggtca tcccggcggc gcttgctaaa ggaaaaaatt cattcatcag
    23101 gaattacttc tggaaccatt tgttgtagat ggtttcgtaa gtgccatctt tcttcacttt
    23161 ttccagcgca gtgttgagtt tctgctgcag ctcagtgttg ccctgacgta ccgcgatgcc
    23221 gaggccagtg ccgaagtaat ctttatcggt cactttgtcg cccaccgccg ccagtttcgg
    23281 gttatctttc agccactcag tgaccactgc ggtgtcaccg aagacgccgt cgatacgccc
    23341 gttttgcaga tccagttttg cgttctggta gctgtcatac ggaacggtag tgatttccgg
    23401 gtgcttatcc ataatgaatt tctggtgtgt cgtcccgttc tgtacgccga cttttttgcc
    23461 tttcagctga tcaacactgg tgtatttgcc ttgctgaccc acaaacaggg cagagttgtc
    23521 atagtacggg gtggtaaaca gcacctgctt ttcacgctcc ggagtgatat ccatgcccgc
    23581 catcacggct tctacgcgac ggaatttcag gcttgggatc aggctgtcaa acgcctggtt
    23641 agagaaagtg caggttgcat caatctcttt acacagcgct tgtgccaggt cgacgtcaaa
    23701 accaacgatc tggttgtttg catcaatcga ttcaaacgga ggataggatg cttcggtagc
    23761 aaaacgaatg gtttcggcag ctgtggcgga aagactaaaa cctgcaatta acgcggcaat
    23821 cagaactttt ttcattgttg ttatcccgaa tcttagtgag agagatagtt tttaaatgct
    23881 tcggtttgcg gctcggtaaa gcagctcgcg tcgccttgtt ctacgatatg accattttcc
    23941 atatacacca ctcggctggc ggttttacgc gccacttcaa cttcgtgggt gacgatcacc
    24001 tgggtaatat tcgtttctgc cagctcacga atgatgctga cgatttgtgc cgtaatttcc
    24061 gggtccagtg cggcggtcgg ttcatcgaac agcagtacct gcggttccat catcaacgca
    24121 cgggcaatag caacacgctg ctgctgacca ccagaaagat gcagcgggta acgatcgcta
    24181 taaggtttga gacgcagacg ttccagcagt ttttctgcac gggccagcgc ctgatcttta
    24241 ctcaacccca gtacacggca gggcgcttca atcaggtttt gctgcacggt cagatgcggc
    24301 cacaggttgt attgctgaaa caccatgcca acgttacgac gcaaatcgcg aatcgctttg
    24361 tcagaggggg ttttggtgaa atcgaaatgg ttgcctgcaa tgttgagcgt accggagcgc
    24421 ggcatctcaa gcagattgag tacacgcagc agcgagcttt tacccgcgcc gctggggcca
    24481 agtaacacca gcgtttcgcc ctgtgggcaa tccagcgtga tatcgaacag cgcctgatgc
    24541 gcgccgtaga agcaattaat gccgtttaat tgaatactca ttgacactcg tatactggca
    24601 gtctgatagc tattgaggtc gaagatagta cctttgacag aataattatg caatatttct
    24661 gctttaaaag ttaaaagcaa agcgcattat tcaataaaca tagcacaaaa taacgggggc
    24721 ggtggtcggc gagcataaat gtcggcattc ctcacgaaat gccggacaat ttacggggtt
    24781 tattggttga tcaaggcgtt agcgattctc gatggactga cggagcgtac ccgccgtggc
    24841 atgaacgctg ccgcctaagt agcgtacatc gtcgatcacc caacactggc cttcctgaat
    24901 cattaacact tcatcctgcc agctctgatc accctgtttt agatccacac gcagaggaat
    24961 atttcgcgca tcacgattcg ggattgttga ggcactggca acacgggcgc tctctggcaa
    25021 ggttgtgcga ctggagaatg gatcgttggt cagtagttcc cgatggttat tatcccggga
    25081 ggcatcgcta agcagtgtcg ccagtttgtc gctcagataa gggcgcaagg cggtgatgtc
    25141 gttgctgcgg tgcaaaatgc ggtagtcata aaattgctgg gccacgttac ccgggcctcc
    25201 ttcaacgcaa ggaccactgc gtgtgccgtt atctttataa gctggagtga ctgtggtgca
    25261 ggcactgagg agcagtgcgc aggggataag cattgtcaat ttgctgtagc gcataatgat
    25321 ttccttataa gcgatcgctc tgaaagcgtt ctacgataat aatgatatcc tttcaataat
    25381 agcgtatcag tctgataatg cttttgagat cgaaggctta gcaaacaagg agatcgatca
    25441 tgcaattttc tacaacccca actctggaag gccagaccat cgttgaatat tgcggtgtgg
    25501 tgaccggcga agcgatttta ggtgccaata ttttccgtga tttctttgcc ggtatccgcg
    25561 atatcgttgg cggacgttcc ggtgcgtatg aaaaagaact gcgtaaagca cgggagatcg
    25621 cctttgagga attaggctcc caggcgcggg cgctgggggc cgatgccgtc gtcggtattg
    25681 atatcgacta cgaaacggtc gggcaaaacg gcagtatgct gatggttagc gtcagcggta
    25741 cggcggtgaa aacgcgtcga tgagaagagt cttctggctg gtcgctgccg ctctgttatt
    25801 ggcagggtgt gcaggcgaaa aaggcattgt cgagaaagag ggatatcagc ttgatacccg
    25861 acgccaggcg caggcggcgt atccgcgcat taaagtgctg gtgatccact acaccgcaga
    25921 tgattttgat agctcgctgg cgacactgac cgataagcag gtcagctcgc attatctggt
    25981 ccctgcggta ccaccgcgat acaacggtaa accgcgcatc tggcaactgg tgccggaaca
    26041 agaactggcc tggcatgcgg ggattagcgc ctggcgcggg gcaacgcgcc ttaacgacac
    26101 ctctattggc attgagctgg aaaaccgtgg ctggcaaaaa tcggccggag tgaaatattt
    26161 tgccccgttt gaaccggcac agattcaggc gcttattcca ctggcgaaag atattattgc
    26221 ccgttatcac atcaagccgg aaaacgtagt ggcacatgcg gatatcgcac cgcagcgcaa
    26281 agacgatccg gggccattat ttccctggca gcaactggcg cagcagggga ttggtgcctg
    26341 gccggatgcg cagcgggtta acttttacct tgccgggcgc gcgccgcaca caccggtaga
    26401 taccgcgtca ttgctggagc ttttggcgcg ctacggttat gacgttaaac ctgatatgac
    26461 accgcgcgag cagcggcgcg tgattatggc attccagatg catttccgcc cgacgttata
    26521 taacggcgaa gcggatgcag aaactcaggc gattgccgaa gcattgctgg agaaatacgg
    26581 gcaggattag cgcggcagtt ttccgtggtc gcgtagccag gcggcagttt tctcgatacc
    26641 ttcatccagg gtgatgaccg gctgataacc taactcttcc tgcgcacgcg taatatccag
    26701 cgtaaagtca aaattcaact tggagacgcc gtagtgggtc agcggcggct cttttgctga
    26761 cttgcggaaa cgctccatgc tgcgggcgat catatccagc atcgggtagg ggacggaacg
    26821 aatacgacag tcaatattca actcgtcgat cagcttctgc acgatgctgc acagtgtgcg
    26881 atgctcgccg ttggtgatgt tgtacacacg cccggaaggt agcttatcgc aggcttcctg
    26941 gcttgccagc cacattgcgt gcacggcatt ttcatagtag gtcatatcga ccagcgcact
    27001 gccgccatgc ggtaacagaa tactgccgta gtggtgcatc atatgcgcca gacggggaat
    27061 aaagacttta tcgtgcggtc cgaacagact ttgtgggcgc agaatagtaa agcgcgtttg
    27121 tggattcgcc tgcgaaaaca tattgatcac ttcttcgctg gctgctttgc tgcgggcaaa
    27181 ctcgttggcg aagcggtgag ggcgaaaatc ttctttaata tcgcgatggt ggtgataatc
    27241 gaagtacagg gagggggaag agatatgaat aaagttacgc acaccccagg cgacagccca
    27301 ttcacccagg cggcgagtgg cgcgaacgtt agccagatcg aaagcctgtt gtgtccccca
    27361 gggtgaggta aagctggagc agtgccacag cgtatcaatg cccgcgagca tcactttagc
    27421 ttgtgatgaa accagctcgg tcagatccgc cggaacaaac tctgcgccca ttttttccag
    27481 caatttgccc attgcctcgt tgcgaccggt cgctcgcacg ctgatgcctt tctggcataa
    27541 aaactctacc gcgtttcgac ctaagccgct ggtggcgccg gtaaccagta ccttcatatc
    27601 aatccactgt tgttgagaaa ataacgtgcg cattcttccg tgatttcccc catgatgcaa
    27661 tgggaaacat gaaagaataa cgcaggtttt gtcgattaat ctgtgctttg ttctgccagt
    27721 ctggcgattt gttttgccat tccgcgaaaa ataaacagat gcgcggggat catcaataac
    27781 cagtaaaaca gccccggcat accgtgcgga tgccagaaag cgcggacatc gatagtacga
    27841 tagtcgcctt tatcttccag gctaaaacac agtcgtccca gccccggcgc tttcatgcca
    27901 aataacaacg taagttgttt ttccggttca acgacaatca ctttccagct atctaccgca
    27961 tcgccagtct gtaaatattc gcgctccggg cggcctttcg ccagcttatg accgatcgcg
    28021 cggtccatca acgcccgtgt ctgccacaaa atattgccaa agaaataacg ctctttaccg
    28081 ccgatttggt tcactacctg ccataaagca gcaaggctgg cggacgtttt aacggtaaac
    28141 cccgcctgtt tggcaaaata accgtactcc ggtcgccagc gggcaaaggc ctgagcgtcg
    28201 tagccccagt cgctggagtt gaccagtttt tcctcctctt tcaacgtgct acgtactgcg
    28261 tcatcgaaag cgatcagccg ttgtgggatg agtgcacgta gcgcggtatc atccgccagc
    28321 agatcgtgtt tcagcccctg aatcaacgcc ctggcggtgg tgggcggtac ggaagtaatc
    28381 acattgagaa accacaccga aatccagcgg gtggggaggg ggatggggat caaccagcgg
    28441 cgcttgccgc tcaccgccat aaaatgttca aactgttgct gataactgag cacctctggt
    28501 ccggcggctt cgaagatgcg gtgttcgctg gccggatgat ctaacaacgc caccagatag
    28561 tgcagcaagt tttccagcgc gatgggcgtg gtgcgtgaac gtacccagcg tggcggcgtt
    28621 aacactggca ggttgtagac catatcgcgc atgacttcga acgccgctga acctgcgcca
    28681 acgataattc cggctcgaag ttcggtcaca ggtacattcg cttcacgaag aatgtccgcc
    28741 gtagcctgac gagcacgcag atgatccgac tgctcatgtg gcggggcctg caacgaactg
    28801 agaaagatta attgcttaac tggtacttca cgtagcgcat cgcggacgtt gagagccacc
    28861 tggcgctcct gagcgataaa atcgccgcct tcgcccatgc tgtgcaccag aaaatagacg
    28921 gtatcgatat cctgcaacag ggccggaagg ttatccggcc agctgagatc gactttatgg
    28981 caactgacgt ttgccagttg cagctttgca agcctgtcga catgacgtgc cgccgccagg
    29041 atctgatgcc cttgctggct gagtgtgcgc accagatgct gaccaatgta gccactggca
    29101 ccgagaacta aaatgcgttg cggcacgtct ctctccttaa cgcgccagga atgcgcgcca
    29161 gtgggcggcg acttccgcca gttgttcgcg cgagacgtca agatgcgtca ccaggcggac
    29221 aatcggcgag gcgttaatca gcacgtttct cactttcatg tattcgccta acgcggcagc
    29281 attttcttcc ccgacgcgaa caaacagcat attagtgtcc tgacgcatca catccgcgcc
    29341 tgcttcacgc agttgctccg ccatccaggc ggcgttgtcg tgatcttcct gcaaccgtgc
    29401 gacgttattt ttcagggcat acatcccggc ggcagccaga atcccggact gacgcatccc
    29461 gccaccggcc attttccgcc agcggatggc acgtttaatg taatcacgat taccgacgag
    29521 taatgaaccg acaggcgtcc caagaccttt cgacaggcaa atggtgaacg aatcacaata
    29581 ttgcgtgatc tctttcagtt cgcagccgta agccaccacg gcattaaaga tgcgcgcacc
    29641 gtcaacatgc agcgccagat tgcgctcgcg ggtaaattcc catgcttctt tcaggtattc
    29701 acgcggcagc actttgccgt tgtgggtgtt ttccagactg agtaatttgg tgcgggcgaa
    29761 atggatatcg tcgggtttga ttttcatcgc cactttatcc agcggtagcg tgccgtcggc
    29821 tgccgcgtcg atgggttgcg gctgaatact gcccagcacc gctgcgccac cggcttcaaa
    29881 cagatagtta tgcgcggcct gaccgacaat atactcttcg ccacgttcgc agtgactgag
    29941 cagagcgacc aggttggcct gagtgccggt aggcagaaaa atggcggctt ctttaccgga
    30001 aagctctgct gcatagtcct gcagagcatt aacggtaggg tcgtctccgt aaacgtcgtc
    30061 cccaaccggg gcggccatca tcgcttcgag catggcgcgg ctcggtcggg taacggtatc
    30121 actgcgtaaa tcaatcatgg catgtcctta ttatgacggg aaatgccacc ctttttacct
    30181 tagccagttc gttttcgcca gttcgatcac ttcatcgccg cgtccgctga tgattgcgcg
    30241 caacatatac aagctaaatc ctttggcctg ttcgagtttg atctgcggtg gaatggctaa
    30301 ctcttctttg gcgaccacca catccaccag caccggaccg tcgatggaga aggcgcgttg
    30361 cagggcttca tcaacttcag acgctttttc tacacggata cccgtaatgc cgcacgcttc
    30421 ggcaatgcgg gcaaagtttg tgtcgtgtag ttcggtgccg tcagtcaaat agccaccagc
    30481 tttcatctcc atcgccacaa agcccagcac gctgttgtta aagacgacaa ttttcactgg
    30541 cagtttcatc tgcactactg agaggaaatc gcccatcaac atgctaaaac cgccatcgcc
    30601 gcacatggcg accacctgac gttctggctc tgtcgcctgc gcacccagcg cctgcggcat
    30661 ggcgttagcc atcgaaccgt ggttaaacga acctaacagg cgacgcttgc cgttcatttt
    30721 tagataacgt gccgcccaca ccgttggcgt accaacgtca caggtgaaaa tagcgtcatc
    30781 ggcggcaaaa tgactaattt gctgcgccag atattgcggg tgaatggctt tctcgctcgg
    30841 tttagctaaa tcgtccagcc ctttgcgggc gtcgcggtaa tcttccagcg ctttatccag
    30901 aaacttgcga tcggcttttt cttccaccaa tggaagcaat gcacgcagag tcgacttgat
    30961 atcgccgacc agtgccatat ccaccttgct gtgagcgccg atgctggctg ggttgatatc
    31021 aatctgaatg attttggcat cggtcgggta gaaggcgcgg tagggaaatt gcgtgccgag
    31081 tagcactaac gtgtcggcgt tcatcatggt atggaaacct gacgagaagc cgattaaccc
    31141 ggtcattcca acatcatacg gattatcgta ttcgacatgt tctttaccgc gcagggcatg
    31201 aacaataggc gctttaattt tcccggcaaa ctcaactaac tctttatgcg cccccgcgca
    31261 gccgctgcca cacatcaggg cgatattgct ggaataacgc agcagttgcg ccagtttgcg
    31321 taactcttct tcttccggcg tcacgactgg ttgtggcgca tgataccagt gcgtggttgc
    31381 cccttctggc gcaggtttta acgccacgtc gcctggtaac acgacaaccg aaacgccacg
    31441 gttaagcacc gctttgcgca tggcaatcgc cagtacttgt gggatctgct ccgggctgga
    31501 aaccagctcg caatagtgac tacattcgcg gaatagctct tgtgggtggg tttcctggaa
    31561 atagccgctg ccaatttcgc tggagggaat atgagcggca atcgccagta ccggaacgtg
    31621 attgcggtgg caatcaaaca ggccgttgat taagtgcagg ttgccggggc cgcacgatcc
    31681 ggcgcagacc gccagttctc cgctaagttg tgcttcagcg ccagcggcaa aggccgccac
    31741 ttcttcgtgg cgggtggaca tccactcgat ggtgcccatg cgattaagac tgtcactaag
    31801 accattcaga gagtcgcctg tgactcccca gatgcgtttc acccctgccg attcgagtgt
    31861 tttggcgata taagctgcaa ccgtttgttt catggttctc catctcctga atgtgataac
    31921 ggtaacaagt ttagttcatc tgacggaggg ggaagggatg ggagagaaag gaggcactaa
    31981 cggttaaata gcccgatgaa aggaatatca tcgggcataa ggcgattatg cgagaaccaa
    32041 atccccctgc ggatggcagg agcaggccag tacgtaacct tcagcgattt cggcgtcggt
    32101 cagcgtcatt gtactgctca ccgtatattc accggaaacc acttttgtct tacagcagcc
    32161 gcaaacaccc gcacggcagg cagcgacaac cggaacgtta ttgctttcca gcgcctccag
    32221 tagcgtggtg ccaaccgggg cgtaaaattc tcgtgccggt tgcagtttgg tgaatttcag
    32281 accgctggtc gccgcttttg ctactggggt gaagaatttc tctttaaaga aacgcgtcac
    32341 gccgagcgct ttcacttcct gctctaccca atccatatac ggagccgggc cgcaggtcat
    32401 cacggtacgt gaagctaagt caggtacacc tgccagcagt tctcgagtga gacgaccagc
    32461 gataaagcct tcggtaacgt tattttctgc caccagcgtt accggatagt tacgccactc
    32521 atcggcgaaa ataacatcct gcggcgtatg cacgttgtag atcacccgca catcggcctg
    32581 tggacggttc ttcgcaagcc agcgacgcat cgacataatc ggcgtgacgc cgcagcctgc
    32641 cgccagcaac aggaatttat cttctgcttt atcgtcgcag gtaaattccc ccatcgcgtc
    32701 cgaaagccag agataatcac cgcgttttac atcgcgcgtc agccactggg agccgacacc
    32761 gtcatcaatc cgccgcacgg tcagggtgat atattcactc acgcctggcg tggaggaaat
    32821 ggtgtaagca cgcagcgttt ccgctgagtt tcgcacgctg accagtgcat attgcccggc
    32881 gcgatatggg tagtaatcgt ggcaaatcag ggaaatcgtc cacacatccg gcgtttcttg
    32941 cgtaatgtga tgaacctgca tccgccacgg gcattgattc gttggcatcg tcatcgacaa
    33001 actccttacg cgctcaacag ttgcttcatg tcttcttcaa cagtggtgat agaacgcagg
    33061 ccgaatttct cgttcagcac cgccagcagg tctggtgtca ggaaaccagg tgcagtcggg
    33121 ccggtgacga tatttttcac gcccagagaa agcagcgtca gcagaatgac gatcgctttc
    33181 tgttcaaacc aggagagcac cagcgacagc ggcagatcgt tcacaccaca gcccagtttc
    33241 tctgccagag tgacagccag aataatcgct gagtaagcat cgttacattg acctgcatct
    33301 accagacgcg gcagaccttc gatatcgcca aactcaagtt tgttaaagcg atatttacca
    33361 caggcgaggg tcaggatcag gcagtcatcc ggcacgatgg tggcgaaatc ggtgaagtag
    33421 tggcgctcgc cgcgtgcgcc gtcacagcca ccaagcagga agatatgacg cagtttttca
    33481 cggctcacca gatcaatcag cgtatcagca gcgccaagca gcgtctggcg accaaaaccc
    33541 acggtgataa ggtgcggaat ttcgctgtac gggaagcctg ccatctgttg cgcctgggtg
    33601 ataaccgcag agaaatcatc accgtccaga tgacgcacgc caggccagcc aacaatgctg
    33661 cgggtccaga tacgatcgtc ataagcgctt acggttgggt cgatgatgca gttcgaggtc
    33721 atcacgatgg ggccagggaa acgagcgaac tccacttgct gattctgcca gccgctgccg
    33781 tagttaccga ccagatgctt gaatttacgc agctccgggt agccatgcgc aggcagcatt
    33841 tcgccgtggg tgtagacatt aacgcccgtg ccttcggtct gttccagcag gttgtagaga
    33901 tctttgagat cgtgaccgga aatcagaatg catttacccg ccgtcgcttt gacgttgacc
    33961 tgggttggcg tcgggtgacc gtatttaccg gtttcgcctg catccagaat gctcatcact
    34021 ttgaagttca tctggccgat ttccattgaa cactcaagaa gcgcgttcat atcggcaggc
    34081 caggtcccca gccacgccat gattttatgg tactgggcat aaatatcgtt gtcgtattga
    34141 ccgagaacat gcgcgtgttc catataggcc gccgcacctt tcaggccata caggcacagc
    34201 agacgcaggc cgagaatgtt ttcgccaatc gccgctttat ctttgttagg ggtaaattct
    34261 gctgcctgac gttgcagctc gccgagatca tcgctcacca gttgcaggtc agccatcggg
    34321 ttatcgacgc gcgcgttggc atctacagcc aggcattgtg ctttcagcgc ctcgcgcaag
    34381 gcaatcgctt cacgagcgta gccgacaata cgcggagaat cgaagttaac gttggtcagg
    34441 gttgagaaaa aggcacgtgg cgcgaagctg tcaacatcgt ggttgatgat gccgtattca
    34501 cgcgctttta ccgcccaggc agaaagccct tgcagcgccg cgatgagtaa atcctgaagg
    34561 tcagaagttt ccgccgtttt accacacatc ccctgcgcgt atgagcagcc gtttcctgcc
    34621 ggagtacgga tagtttgttc acattgcaca caaaacatga tcacaccttt taaagttata
    34681 tttaatatac atgtttaagg ttaagacgct taacgcgggg ataaaaggga tttttcatgc
    34741 aactttaagg gagattgatt tagcgcaatt ttggcggcag ggatctaccg ccagagaggt
    34801 attacgcaga gaaaaaggcg atgaggatcg gcactaacag gctaagaata aaaccgtgaa
    34861 caattgccgc cgggaccata tccagcccgc cagtacgttg aagaacgggc agggtgaaat
    34921 ccattgatgt ggcaccgcat aagcccagtg cagtagagcg gctgcggcga atcagcccag
    34981 ggatcaacat aatagcaatc agttcacggg ccagatcatt aaaaaacgcc gcgctcccga
    35041 ttaccggacc aaaagattcg gtcaataaaa taccggaaag agaataccag ccgaaaccgg
    35101 aggccattgc cagcgcggta ttgatgggga gatcaagaat aaaggcgtta attaaaccac
    35161 caattaatga actgacaacc accaccacgg cgacaatcat tccccggcga ttaaggacaa
    35221 tctgctttaa ggtcatgcca ttattgcgca actgaatacc aacgaggaaa agtagcaaaa
    35281 ttaacgtgta ttcactggct tcggtcgcgt gttgtaagaa agccagtcca ctcagaccaa
    35341 tggcaaaacc aatcactact acgccgcaca gttttagcga ctccagcgcc atcgcaatac
    35401 gcgacgggag tttttcttgc tgatggtggt tgcgccacgg caggcctcgc tccagccaca
    35461 tcagggcggc aatattacac agtaaaataa cggtaatact gacggcagaa taatgcagaa
    35521 tcgccaacag gttactggcg aggttatcga gaaacgccag actgataccc ataaaaaaga
    35581 gaataaggta aaccatccag cttaatagct gattaataac ttttaacgca gcttgttggc
    35641 gaagcggaat gaggtaaccc acaatcaggg gaaccagaat gattaacagc ccagaaaaca
    35701 tgaaaaccca gtccttgcaa agatgaagtc gaaatgcgcg atgacacact actgaaagcg
    35761 gaaggacgag taaagttgca attaaaagga aatgttatgc ataaggagca gtagagtatt
    35821 cgttttcatt taaagatatt cttgcgcttt aattacaaac tgcaccgatg ttggtggcgt
    35881 caaaatcgcc gaggcgttcc ctgaaggccg gggcagccca catggatgtg ggctgagggc
    35941 gcgttttaca gggatgttac ctcgcgcccg acccggtagc cgtaagggat aagtcgaggg
    36001 caccgcgcag cggcgatttt gttcgccaga gcccgggggg gcagggggcg gcggcgattg
    36061 gccgccccct gcgcgctcct tgcgccagtg gcaatatgtg gcttagctca tgaaaggagc
    36121 gcaacaagat gatgaatcaa catataacaa catcttaaaa aaagcctgac attacgctag
    36181 gccttctgcg ttaattaatc acgcttttcc agcagggtcc ggtaaatcag accaccgata
    36241 atgccgccga caattggcac cacccagaag aaccacagtt gttctaatgc ccagccgccc
    36301 tggaagatag caaccgcggt gctgcgcgcc gggttaacag aagtgttagt caccggaata
    36361 ctaattaagt gaatcagggt taaggccaga ccaatagcga tcggcgcaaa acctgccggc
    36421 gcgaatttgg cggttgcgcc gtggatcacc aacaggaaac ctgcactcaa taccagttca
    36481 actaccagcg cggaaagcat ggaataaccg cctggtgaat gctcgccata accgttagaa
    36541 gcaaaaccgc tggctgccgc gtcaaaaccc gttttaccac tggcaattaa atacagcagc
    36601 gccgctgcaa caataccgcc gacaacctgg gcaattacgt agccaacgac ttcttttgcc
    36661 ggaaaacgtc cgccagccca taaaccaata gtgaccgccg ggttaaaatg accaccagaa
    36721 atatgaccaa cagcaaaggc catcgtcaga acggtcagac cgaacgccaa cgccacgccg
    36781 gcaaaaccaa tgcctaattc cgggaagcct gcggccagta cagcactacc acagccacca
    36841 aaaacaagcc agaaagtacc aaaacattca gctgctaatt ttctgaacat atccacctca
    36901 attaaaaatt gaccctgtga aaaatatggt cgttttatag ggtcgtcgta aaaaaatgac
    36961 gacggaaata atgcgcggct attttaaaaa cgaaggcgag tcattcacca gataaataaa
    37021 tccagtaaat ttgatttagg gcaacagcgg gttgccccat atagtcattt gtctgattga
    37081 cagtgtagtg cacgcaaaag atttaatcct ttaggcgtaa taaaaaataa tatatcatgc
    37141 taattatttg attttgttgt ttttgcagac ttatcagcaa gagggagtat aacgcgatta
    37201 ttcgctcatt tttcagacat ttgccatgct taaatgtgat gtcatcacgt attagcaagg
    37261 cctttcccgt tatactgcca gcgtaaagga taagtcacat atttctggag gggatatgat
    37321 tcttgagcgc gttgaaattg tgggttttcg cggtatcaac cgtttgtcgt tgatgctgga
    37381 acaaaacaac gtcctgattg gggagaacgc gtggggtaaa tccagcttgc tggacgcctt
    37441 aaccctgctg ctatcgccag aatcagatct ctaccatttt gagcgcgacg atttctggtt
    37501 cccgccggga gatatcaacg ggcgagaaca tcatctgcat attattttga ccttccgcga
    37561 atcgctgcca ggccgacatc gggttcgccg ttatcggccg ctggaagcgt gctggacgcc
    37621 atgcaccgat ggctatcacc gtatttttta tcgtctggaa ggggagagtg cggaagacgg
    37681 cagcgtgatg acactgcgca gttttctcga taaagacgga catccgattg atgtcgagga
    37741 tattaacgat caggcacgcc atctggtgcg tttaatgccg gtgctgcgct tgcgtgatgc
    37801 ccgttttatg cgccgtattc gtaacggcac ggtgccaaat gtccctaatg tggaagtcac
    37861 cgcgcgccag ctcgatttcc tcgcccgtga gttatcctca catccgcaaa atctctctga
    37921 tgggcagatt cgtcagggac tttccgcaat ggtacagctg cttgagcatt atttctctga
    37981 gcagggggcc ggacaggcgc gatatcgttt aatgcggcgg cgggccagca atgagcaacg
    38041 aagctggcgc tatctggaca tcatcaaccg gatgattgac cgacctggag ggcgctcgta
    38101 tcgggttatt ttgctcggcc tgtttgctac tttattgcag gcaaaaggca cattgagact
    38161 ggataaagac gcgcgtccat tgttgctgat cgaagatcca gaaacccgtt tacaccccat
    38221 tatgctttca gttgcctggc atctgttgaa tcttctgcca ttgcagcgca ttgccaccac
    38281 caactcgggt gagttgcttt cgttaacgcc ggtagagcat gtttgccgac tggtacgtga
    38341 gtcctcgcgc gttgccgcct ggcgtctggg gccgagtggc ttgagtaccg aagatagccg
    38401 acgcatatcc tttcacattc gttttaaccg tccgtcatcg ctgtttgcac gctgctggtt
    38461 gctggtggaa ggggaaacgg aaacctgggt tatcaatgaa ctggcgcgtc agtgcggaca
    38521 tcattttgat gccgaaggga tcaaggtcat tgagtttgcc cagtccgggc taaagccact
    38581 ggttaaattt gcccgccgaa tggggattga atggcatgta ctggtcgatg gcgatgaagc
    38641 agggaagaaa tatgccgcta cggtacgcag cctgttgaat aacgatcggg aagccgaacg
    38701 agaacattta acggcgttac cggcgctgga tatggaacat tttatgtatc gccagggatt
    38761 ttccgatgtg ttccaccgcg tggcgcaaat cccggaaaat gtaccgatga atctacgcaa
    38821 aattatctcg aaagcgatcc atcgctcttc caaacccgat cttgccattg aagtggcaat
    38881 agaggcagga cgtcgtggtg tggactccgt accgacgctg ctgaaaaaaa tgttctcacg
    38941 cgtgctgtgg ctggcgcgcg gtcgcgcgga ttaaccgcga aacatcgtgg ccatttgtgg
    39001 ctgaatagcg tcgagcatct catagcgccg acggtattca gcccgttttt tactggcgat
    39061 ttcggcaatc tcttttcgtg ctatctgtgc tggaaggcgg taatggcgtt cagcatcaca
    39121 tacgccgcca accgattccc agaaagcgtt gtaatcagcg tggatcttgc cttctttatc
    39181 gcgataacgc aggctgcggt aaatatgcgt ttcattgctg acggcaataa tctgctctac
    39241 ctgcaaacgt tgggcaaaca gacaggccgc ttccatcacg aggcgtttgg gaaatagccc
    39301 gtggcaggct ttcgtcgcat tctggatttc ctgatgtgga atttcccatt ttgcgccttg
    39361 cagtccgcca ataaacatcg ttcttttccc ctgatattca cacagggtaa acgtgatctc
    39421 tgccagagga ataccttcgc tgttgcgaaa caggattgtg ctgtcacctt ctttatccat
    39481 tgagatcatc atggtcagct taagcgtgaa ctgctcgccg tttttgcctt ccagcttcgc
    39541 cagttgcagc ccgggggtat tcaaatataa gctgaattct tccgccgaca tacatccgcg
    39601 gagtaacgca taatggtaac gtaacgcctc cagcaattgc ttacggctaa gattcgccgc
    39661 aaggtaaggg cgatgcagac gcacaggcag tcgcggctgg cgcgttaaca acacattgag
    39721 attaggccag tgggaaagtt cgttcatcca ctcaacgctt aaacgcggca taatcaacga
    39781 gcgcagcaaa aatttctggc gaaaactacg gcgatgccag aatttacccg gccgacactg
    39841 tccacgtgcc agactaagaa aaagtgacag gctgctgaga gattcagatg gcgtaaaggt
    39901 ccgttcagtt agctgcgaca tattcatgaa atcattggtt atacatgacg tcgatttcac
    39961 cattgcgtat cttaaccaaa catcaatagt gtgattacta acgtaaattt tagggttttg
    40021 ttgatatttc gttgaagtta atgacccgga ttggcatatg gagtattcag aatatttatg
    40081 aaaaagcgga aaaccgtgaa gaagcgttac gttattgcgc tggtgatagt catcgccgga
    40141 ctgattacgt tatggagaat tcttaacgca cccgtgccga cttatcagac actgattgtg
    40201 cgccccggtg atttacagca aagcgtgctg gcgaccggaa agctggacgc gctgcgtaag
    40261 gttgatgtgg gcgcgcaggt cagcggtcag ttgaaaactc tgtcggtggc gattggcgat
    40321 aaagtaaaaa aagaccagct tttaggggtt attgatcctg aacaggctga aaaccagatt
    40381 aaggaggtcg aagcaacgct gatggagcta cgtgcgcagc ggcagcaggc ggaagcggag
    40441 ctgaaactgg cgcgggtgac gtattcccgt cagcaacgtc tggcacaaac gcaggcggtt
    40501 tcacagcagg atctcgacac cgccgcgacg gagatggctg tgaaacaggc gcaaattggc
    40561 accattgacg cggaaatcaa gcgcaatcag gcttctctcg atacggctaa aaccaatctc
    40621 gattacactc gcatcgttgc cccgatggcc ggggaagtca cgcaaatcac cactctgcaa
    40681 ggccagacgg tgattgccgc acaacaagca ccgaacattc tgacgctggc agatatgagc
    40741 accatgctgg taaaagcgca ggtttctgaa gcggatgtaa tccacctgaa gccggggcaa
    40801 aaagcttggt ttacggtgct tggcgatcca ctgacgcgct acgaggggca aatcaaggat
    40861 gtactaccga cgccggaaaa ggttaacgac gctattttct attacgcccg ttttgaagtc
    40921 cccaacccca atggtttgct gcggctggat atgactgcgc aagtgcatat tcagctcacc
    40981 gatgtgaaaa atgtgctgac gatccctctg tcggcgttag gcgatccggt tggcgataat
    41041 cgttataaag tcaaattgtt gcgtaatggt gaaacacgcg agcgtgaagt gacgattggc
    41101 gcacgtaacg ataccgatgt tgagattgtc aaagggctgg aagcgggcga tgaagtggtg
    41161 attggtgagg ccaaaccagg agctgcacaa tgacgccttt gctcgaatta aaggatattc
    41221 gtcgcagcta tcctgccggt gatgagcagg ttgaggtgct gaagggcatc accctcgata
    41281 tttatgccgg tgagatggta gcgattgttg gcgcttcagg ttccggtaaa tcgaccctga
    41341 tgaatattct cggctgtctg gataaggcca ccagcggcac ctatcgcgtc gccggtcagg
    41401 atgttgccac actggacgcc gatgcgctgg cgcaactgcg ccgcgagcat ttcggcttta
    41461 ttttccagcg ttaccattta ctttcgcatt taaccgccga gcagaacgtt gaagtacccg
    41521 ccgtctatgc cggtcttgag cggaaacagc ggctgcttcg cgcccaggag ttactgcaac
    41581 gactggggct ggaagaccgt acagagtatt atccggcaca gctttcgggt ggtcagcaac
    41641 agcgcgtcag catcgcgcgg gcattgatga acggcggtca ggtaattctt gccgatgaac
    41701 caaccggcgc actggacagc cattctggcg aagaggtgat ggcgatcctg catcagctgc
    41761 gcgatcgcgg gcatatggtg attatcgtca cccacgatcc gcaggtcgct gctcaggccg
    41821 agcgggtgat cgaaattcgc gacggcgaaa ttgtgcgcaa tcctcccgcc attgaaaaag
    41881 tgaatgttgc tggcgggacg gagcctgttg tcaacacggt gtctggctgg cggcagtttg
    41941 tcagcggttt taacgaggcg ctgacgatgg catggcgggc gctggcagcg aataaaatgc
    42001 gtactttact gaccatgctg gggattatta tcggtattgc gtcggtggtt tccattgtcg
    42061 tggtgggtga cgccgccaaa caaatggtgc tggcggatat tcgttctatt ggtacgaata
    42121 ctattgatgt ctatcccggg aaagattttg gcgatgacga tccgcaatat cagcaggcgc
    42181 tgaagtacga cgacttaatc gccatccaaa aacaaccgtg ggtcgcctca gccacacctg
    42241 ccgtctcgca aaacctgcgc ctgcgttata acaatgttga tgttgctgcc agtgccaatg
    42301 gcgtgagcgg cgattatttt aatgtctatg gcatgacctt cagtgaagga aacaccttta
    42361 atcaggagca gctgaacggt cgtgcgcagg tcgtggttct cgacagtaat actcgccgcc
    42421 agcttttccc ccataaagca gatgtggttg gcgaggtgat tctggtcggc aatatgcccg
    42481 ccagagtcat tggtgtggcg gaagaaaaac agtcgatgtt tggtagcagt aaagtgctgc
    42541 gtgtctggct accttacagc acgatgtccg ggcgagttat gggccagtcg tggctgaact
    42601 ccattactgt cagggtaaaa gaaggatttg acagcgccga ggcggaacag caactcacgc
    42661 gtttactttc actgcgccac ggaaagaagg atttctttac ctggaacatg gacggcgtct
    42721 tgaaaactgt tgaaaagacc acacgtactt tacaactgtt tctgacgctg gtggcggtga
    42781 tttcgctggt ggtgggcggt attggtgtaa tgaatattat gctggtgtca gtgaccgagc
    42841 ggacgcggga aattggcatt cgcatggctg taggtgcgcg agcaagcgat gttttgcaac
    42901 agttcctgat cgaagccgta ctggtttgct tggtcggtgg cgcgttggga ataacgctgt
    42961 cactgttaat tgctttcacc ttgcagcttt tcttacccgg ctgggagatt ggtttttcac
    43021 cgttggcact gctgctggcg tttctctgct cgacggccac cgggatttta tttggatggt
    43081 tacccgcacg aaatgcggca cgactggatc cagtagatgc tctggtacga gagtaatttt
    43141 tgagataaaa atgccagccg atcgggctgg cattttgcct ttaggatgta cacaatgaga
    43201 cagaagagct atgcgactgc cgcttctact tcgacgggca caataacact ggcgtgattg
    43261 ccttttggcc cctggtggac atcaaactga acggattgtc cagcttttag cgttctgtaa
    43321 ccatccatct gaatggtgga ataatgagcg aaaatatctt cgccgccgcc ttcagggcag
    43381 atgaaaccaa accctttggc attgttgaac cacttaacag tacccttttc catgcttcga
    43441 catccttcgc aaatcttata caagtaagat ggaataaacc ggggtcagag agggggctgt
    43501 tcaaaacctc gccaactcta gaaatacaat ttagagaatt agggcgagcc gtcaagcgtt
    43561 tgacaggggc cagggggcag gtatgaatca aaaatttgaa gcagttaacg ctattgacag
    43621 gaatgtgaca gatgtcgctg atgccaacga tagatgatag ttatctatca tgtggagtag
    43681 attggtcagg caaataagct cttgtcagcg gcagggcgtt ctgccgataa ccgtaaccga
    43741 agatgataac tgacaatggg taaaacgaac gactggctgg actttgatca actggcggaa
    43801 gaaaaagttc gcgacgcgct aaaaccgcca tctatgtata aagtgatatt agtcaatgat
    43861 gattacactc cgatggagtt tgttattgac gtgttacaaa aattcttttc ttatgatgta
    43921 gaacgtgcaa cgcaattgat gctcgctgtt cactaccagg ggaaggccat ttgcggagtc
    43981 tttaccgccg aggttgcaga aaccaaagtg gcgatggtga acaagtacgc gagggagaat
    44041 gagcatccat tgctgtgtac gctagaaaaa gcctgaatgc aggcataaaa attgggggag
    44101 gtgcctatgc tcaatcaaga actggaactc agtttaaata tggctttcgc cagagcgcgc
    44161 gagcaccgtc atgagtttat gaccgtcgag cacttgttac tggcgctgct cagtaaccca
    44221 tctgcccggg aggcgctgga agcgtgttct gtggatttgg ttgcgctccg tcaggaactg
    44281 gaagccttta ttgaacaaac cacacccgtt ctgcctgcca gtgaagagga gcgcgacaca
    44341 cagccgacgc tgagttttca gcgtgtactg caacgtgcgg tcttccatgt ccagtcctcc
    44401 ggtcgcaatg aggtaaccgg tgcaaacgtt ctggtcgcta tctttagcga acaggagtcg
    44461 caggcggcat atctgttgcg taaacatgaa gtcagccgtc tcgatgtggt gaactttatc
    44521 tctcatggca cgcgtaaaga cgagccgaca cagtcttctg atcctggcag ccagccaaac
    44581 agcgaagaac aagctggtgg ggaggaacgt atggagaatt tcacgacgaa cctgaatcag
    44641 cttgcgcgcg tgggcggaat cgacccactg attggtcgtg agaaggagct ggagcgtgct
    44701 attcaggttc tctgccgtcg ccgtaaaaac aacccgctgc tggtggggga atctggtgtc
    44761 ggtaaaaccg cgattgcgga aggtcttgcc tggcgaattg ttcagggcga tgtgccggaa
    44821 gtgatggctg actgtacgat ttactctctc gatatcggtt ctctgttagc gggcactaaa
    44881 tatcgcggcg actttgaaaa acgttttaaa gcgttgctca agcagctgga gcaggacact
    44941 aacagcatcc tgtttattga tgagatccac accattatcg gtgcgggtgc agcgtctggt
    45001 ggccaggtcg atgcggctaa cctgatcaaa ccgttgctct ccagcggtaa aattcgcgta
    45061 attggttcga caacctatca ggagttcagc aacattttcg agaaagaccg tgctctggcg
    45121 cgtcgcttcc agaaaattga tattactgaa ccgtcgatcg aagaaactgt tcaaatcatc
    45181 aatggcctga aaccgaagta tgaagcgcac cacgacgtgc gttataccgc aaaagcggtg
    45241 cgtgcagcgg tagagctggc ggtgaaatac attaacgatc gtcatctgcc ggataaagcc
    45301 attgacgtta tcgacgaagc gggcgctcgc gcacgcctga tgccggtaag caaacgcaag
    45361 aaaaccgtta atgtggcgga tattgagtcc gtggtggccc gtattgcgcg cattccagag
    45421 aagagtgttt ctcagagtga ccgcgatacc ctgaaaaacc tcggcgatcg cctgaaaatg
    45481 ctggtcttcg gtcaggataa agccattgag gcgctgactg aagccattaa gatggcgcgt
    45541 gcaggtttag gtcacgaaca taaaccggtt ggttcgttcc tgtttgccgg ccctaccggg
    45601 gtcgggaaaa cagaggtgac ggtacagctt tcgaaagcgt tgggcattga gctgctgcgc
    45661 tttgatatgt ccgagtatat ggaacgccat accgtcagcc gtctgattgg tgcgcctccg
    45721 ggatacgttg gttttgatca gggaggtttg ctgactgatg cggtcatcaa gcatccacat
    45781 gcggtgctgt tgctggacga aatcgagaaa gcgcatccgg acgtgttcaa tattctgttg
    45841 caggtgatgg acaacggtac gctgaccgat aacaacggac gcaaagcgga cttccgtaac
    45901 gtggtgctgg tgatgaccac caacgccggg gtacgtgaaa ctgagcgtaa atccattggt
    45961 cttatccacc aggataacag caccgatgcg atggaagaga tcaagaagat ctttacaccg
    46021 gaattccgta accgtctcga caacattatc tggttcgatc atctgtcaac tgacgtgatc
    46081 catcaggtgg tggataaatt catcgtcgag ttgcaggttc agctggatca gaaaggtgtt
    46141 tctctggaag tgagccagga agcgcgtaac tggctggccg agaaaggtta cgaccgggca
    46201 atgggcgcac gtccgatggc gcgtgtcatc caggacaacc tgaaaaaaac gctcgccaac
    46261 gaactgctgt ttggttcgct ggtggacggc ggtcaggtca ccgtcgcgct ggataaagag
    46321 aaaaatgagc tgacttacgg attccagagt gcacaaaagc acaaggcgga agcagcgcat
    46381 taatctgatt gttaggtagg ttggtcaagt ccgtaatctc gaaagaggtt acggactttt
    46441 tgtttatggg gtggaggagg ttcagaccct ttttttaatg atgatggtaa gttgttgata
    46501 attagtgctg cgggaaggta aggataaaaa agggtgctgc aggagaatgg gatggttttg
    46561 ctttatttac aacgggctaa acgtgtagta tttgagttca ctgccgtaca ggcagcttag
    46621 aaattcacag gtaacatact ccacccgccc accatgttca ctgccgtaca gacagataaa
    46681 atgcgaaaaa aaagctcgca ctttcgtacg agctcttctt taaatatggc ggtgaggggg
    46741 ggattcgaac ccccgatacg ttgccgtata cacactttcc aggcgtgctc cttcagccac
    46801 tcggacacct caccaaattg ttttgctacc aaacctcatg ggtggcaacg gggcgctact
    46861 atagggagtt ggagtaaaac ggtcaagaag aattttaatg ataattattg tttgctcata
    46921 ctgtaaacaa gttgtgcagt atatctacat cgagacaagt tacggactta tacttccaaa
    46981 gtacttcata catatcacaa aataaaaagg ccggttaaac cgacctttta ctcgttcttt
    47041 ctcttcgccc atcaggcggt aaaacaatca gcgactacgg aagacaatgc ggcctttgct
    47101 caggtcgtac ggggtcagtt caacagtcac tttgtcgccc gtcaggatgc ggatgtagtt
    47161 tttgcgcatt ttaccggaga tgtgtgcagt aaccacgtga ccgttttcta actctacgcg
    47221 gaacatggta ttaggcaacg tttcaagaac ggtaccttgc atttcaatat tgtcttcttt
    47281 ggccatctaa tcctctgggg tatcactacc gtaatttgaa ccggcaagat aatgccgaag
    47341 ttctgtaaat aagtaaagat ttgcgcgcta aatcgcaaca aacaggttcg gcacattact
    47401 ccgaaaacac acggctaagc cgcaccaaaa gcgcaacgta taagggagcg gtgagataaa
    47461 cgatgggcgt tacctgacgc gaaaaattcc ttatcggcag cggggtaatg agcgtaacca
    47521 actctgcgac cgcaattata acactctggg gagaaatgtg ccgaaaacat tcattcttgt
    47581 ggtgaaaaca agcatcgtgg tacccagaaa ttattcggca atcgtccgag gcgcatttga
    47641 ttgagataat taaggtaatc ccggcgggga atttcgcagg caccaagcga tgctgtgtga
    47701 tcgttaagga cctggcagtc gataagctta ccgccatgac cgataaattc cttacagaat
    47761 accagaagcg ccgttttaga cgcattttcc atccggctga acatggactc gccacaaaat
    47821 agcgttccct gggccacgcc gtacataccg ccgacaagct catcttcacg ccagacttca
    47881 atggagtggg catggccgag ttcgtgaagg cgatggtagg cttcgaccac gccacgcgtg
    47941 atccaggttc cttcttcgcg atcgctggca cagccttcaa tgacctgacc aaaagcgtaa
    48001 ttcatcgtga cacgataggg cgagcgttta tgaaatcgct tcatactacg gctgatatgc
    48061 agtgattctg gccatagcac cgcgcgggga tcgggcgacc accagaggat ggggtcgcct
    48121 ggagaaaacc acggaaaaat accacgctgg taagccatta acaggcgcgc agggctaaga
    48181 tcgcccccaa gtgccagcag gccgttaggc tcacgtaatg cgccttccgg ggaagggaag
    48241 gctattgaat ggcgagaaag ctgaaccagg cgcatgaccg caaaactcca cgcaagtcgg
    48301 atcgttcaat aatagcttac aaaccctgct tgaactggta ataacgcccc tgtctggcaa
    48361 gcagctctgc gtgagtacct tgctcaataa tttgcccgtt gtccatcact attatttgtt
    48421 ggaaacgaga gagtccgcga agtcgatggg tgaccattaa caccgttttc tcacgcatca
    48481 tttctgcaag caattcaagg atctggcttt cggttgtggc atctaagcct tcggtaggtt
    48541 catccagcaa caccagtggc gcatcatgta acagcgcacg ggtgatagcc agacggcgca
    48601 gttcaccacc ggagagctgg cgtccgcctt cacctaacca actgttgaga cctgcatcct
    48661 cgagcagctt ctccagacca acgcgacgca agctctccgc cagagcctca tcactactgc
    48721 caggcgaggc gagtaacaga ttatcacgca gcgtggcgct aaacagatgc actcgctgag
    48781 gaacaacgct gatggtctgt cgtagagccg cttcattcag gctggctatg gggctatcgt
    48841 taagcaaaat ctcgccctgt tgcgggtccc aagcgcgggt cagcagttgt aacagtgttg
    48901 atttgccgca tccggttcgc ccgagaatcg caatatgttc cccggcgttt acctgaagag
    48961 aaatcccttt aagtgcctgt tgggattgct ccggataagt gaactgaaca tcccgtaatg
    49021 tcagcgaaac gcgatcggca acacgagttt gggtatcagg gaaggtgact tccggttttt
    49081 gatccgttaa atcagtgatc cgaacggcag aggcaatgac ttgccccaga tgctgaaatg
    49141 cacccgttac tggtgccagt gcttcaaacg cggctaacgc gcagaagaca aacagggcaa
    49201 ttaacgcgcc gggttgagca ttgccgccaa cgccgccaga cgccatccac agcatcagga
    49261 tcaccgctaa cgcgccaatg agcagcatta tcgcttgcga caatgcggtc agttcagatt
    49321 gacggcgttg cgcttccagc cattgaattt ctgtattctc tagttgcgtg cgataacgat
    49381 cgctggcacc aaaaatggtc agctcagctt gcccttgcag ccaggccgtc agttgttggc
    49441 gatactgtcc gcgaagatga gtcagatttt gcccggtgct ttttcccgca cgataaaaca
    49501 gcggtggcat caggaaaagc gtcagtaaca taatgccgcc cagcgtaaag gcgagggtga
    49561 aatcaaggaa acttaacccg attgtcacca tcataatcac cacaaaagcg cccaccagcg
    49621 gcgagataac gcgcaggtaa agatgatcga gcgtatcaac atccgccacc acgcgattga
    49681 gcaattcgcc ctgacgatag cgcgccagtc cggcagggga gaggggcaac aatttgctga
    49741 aggtgtaaat gcgcagatgc tgcaacacgc ggaaagtcgc gtcgtgactt accagacgtt
    49801 caaaataacg cccggcagta cgggtgattg cggcaccacg cacgcccgca gcgggtagca
    49861 tatagttgaa gctgtacagt ccggcaaccc ccgcaaccgc tgaggccgag aggaaccagc
    49921 cggaaagtgt caacagtccg atactggcga gcagcgtcac aattgccagc acaataccaa
    49981 gacttaacat ccatttatga cgtttataca gtgctagata gggtagcaaa gcgcgcattt
    50041 aaatctcctc ctgacgatgg gccagtaatg tggcgaatgg gccaccagcc acacttaatt
    50101 ccgcgtaacg tccttgctca ataatccggc catcctgcat aacccaaatg acatcccagt
    50161 cagcaagatc ttctaactgg tgggtgacca ttaacgttgt ctggcgcaga gaggcggcat
    50221 tcagcgcctc cattacgcgc tgttcactgt gagcatcaag gctggcagcg ggttcatcca
    50281 acagtaatag cgaacaggga tttagtaacg cacgggccac cgccacgcgc tgcgcctgcc
    50341 ccacggaaag gcgggcagcc tggtcgccaa caggcgtatc aacgccttgt ggcaggagcg
    50401 gtagaaactc gctgacccag gcgttatcca gcgctgcttg taattcatgt tcgctggcat
    50461 caggtcgcgc cagtagtacg ttatcccgta atgttgctgc cggtaattgt ggattttgcc
    50521 caacccagga gagatgttta cgccatgatt ctggtgataa atcgcgtaat tctatcccgt
    50581 tgattcgtag cgatccctga tatgagagaa aaccagaaag cgcgttcaac agtgaacttt
    50641 tacctgaacc gctgcgacca accaacacgg cacgttggcc tgctggcaaa gtaaagttca
    50701 gcggtccggc cagcgtttta ccttccggcg acgtgataaa cagatcctcg gcctcaatgg
    50761 tcaccggatc ggtcgatgct aattccacct cgccacactg cggatgggcg agcggggttt
    50821 ccataaacgt tttcagactg tcagctgcac caacagcctg ggctttagca tgataaaacg
    50881 taccgagatc gcgtaatggc tggaaaaact ctggcgcaag gatcagggcc agaaaacccg
    50941 cagccagcgt cacgccagta tcgtagtgac caaaatccag ctcgccaaga taggaaaaac
    51001 caaagtagac cgccaccaga gcaattgaca gcgaggtaaa aaattcgaga atgccggagg
    51061 ataaaaatgc cagccgtagc acttccattg tccgttggcg gaaatcttcc gaagcagaac
    51121 gaatactttc aatttcagct tcaccacgac caaaaatacg caatgtttcc atgccgcgca
    51181 ggcgatcgag gaaatgccca cttaagcgag caagagcgag aaagttacgt cggttagcat
    51241 cggcagcccc cattccaacc agcgccataa acaacggaat taacggtgca gtgcccagca
    51301 gaatgagcgc cgcagcccag tttgagggga agattgccac cacaatcagc aacggcaccg
    51361 acactgccag cgccatttgc ggcaggtagc gtgcatagta atcatgcata tcgtcaattt
    51421 gctcgagtac cagcgtcgcc cagctccccg caggtttacc ctgaatccac gctggccctg
    51481 cttgttgcag acggtcgaga acctgccggc ggatggcaaa gcggatatgc tgcccggcgt
    51541 gataacccac ccgttcgcgt aaccagacca cccatgcgcg cagtacaaag gtcagaacca
    51601 gtaacgtaaa gggaagcagc agggcttcac ggggaatatt ctccataatc atatgttgca
    51661 gaattcgcgc catgaaccag gcctgggcaa tgatcaatat gccgctcaca aagcccagca
    51721 gacgagaaat attcagccaa cgttgggaga tgacgctttg ctgttttaac cagcgggtta
    51781 actctttttg acgagattta ttcattgcac gcttagcagg tgagttatca gaattatttg
    51841 cagagcaatg ttacaacggg gaaaaaataa aggcgaccca tagtcgcaag gtgtcgcctt
    51901 ctttactttt gttactgatt tgtaaaatta ttttgcgtca gctaaaccat cgaggtagcg
    51961 ttccgcatca agtgctgcca tgcagcctgt accggccgaa gtaatggcct gacgataaat
    52021 atgatccatc acgtcacccg cggcaaagac gccaggaatg ctggtctggg tggcattacc
    52081 atgaataccc gactgtactt tgatgtagcc gttttccagt tccagctgcc cttcgaaaat
    52141 ggcagtattc gggctgtgac cgatagcaac aaacagaccg gcaacgtcga gtgattcgat
    52201 gttatcgctg ttttgcgtat cgcgcagacg aacgccagtg acacccattt gatcgccggt
    52261 cacttcttcc agcgtccggt tggtgtgcag aatgatgttg ccgttctcca ctttatccat
    52321 cagacgctta atgaggattt tttccgcgcg gaaaccgtca cggcggtgaa tcagatgtac
    52381 ttccgaagcg atgttagaca gatacaacgc ctcttcaacc gcggtattgc cgccgccgat
    52441 gaccgcaact ttctggttgc gatagaagaa accgtcgcag gttgcacaag cagaaacccc
    52501 acggccttta aaggcttctt cagagggcag gccgagatag cgtgcagaag ctccggtggc
    52561 aataatcagc gcgtcgcaag tgtattcgcc gttatcgcca ttcagacgga acggacggtt
    52621 ttgcagatcc accttgttga tatgatcaaa aatgatttca gtttcaaatt tggtggcatg
    52681 ttcgtgcatg cgctccatta ataacggacc ggtcagatcg tttggatcgc caggccagtt
    52741 ttccacttct gtggtggtgg tcagttggcc gcctttttcc atgccggtaa tcagcacagg
    52801 ttgcaggttg gcgcgcgccg catagacagc agcggtgtat cccgccgggc ctgaacccag
    52861 gataagcagt ttactgtgtt tggtcgtgcc catgagatcc ccatagttgt tggcagacaa
    52921 tgggcaggat tgtagggaat ttactgacgt aaaaaaagag tatgacgatt ttgttaacaa
    52981 tttgtgcaat cggcagcatc gataagcagg tcaaattctc ccgtcattat cacctctgct
    53041 acttaaattt cccgctttat aagctgatta aatgatgaat aaacgcccct gttaatgaat
    53101 atctggcatg ttgtactaaa aatcgatgtt ttgctttgac aatcccctgg tgttttgcga
    53161 aaacattcga ggaagaaaaa aaacagtatt cttatatgcg cataaccatg catgtaaata
    53221 ccatgtttac cgtgctagtg aaatctacgt atggcgtgga cagacgccat tcgtgatgtc
    53281 gatagctgcc acaaggcaac ggtcttctca ccgtagaccc aggcattgcg cgccgtgaat
    53341 cttcatgatt tcggtctatc gtgacgggta gcgactctga acagtgatgt ttcagggtca
    53401 gacaggagta gggaaggaat acagagagac aataataatg gtagatagca agaagcgccc
    53461 tggcaaagat ctcgaccgta tcgatcgtaa cattcttaat gagttgcaaa aggatgggcg
    53521 tatttctaac gtcgagcttt ctaaacgtgt gggactttcc ccaacgccgt gccttgagcg
    53581 tgtgcgtcgg ctggaaagac aagggtttat tcagggctat acggcgctgc ttaaccccca
    53641 ttatctggat gcatcacttc tggtattcgt tgagattact ctgaatcgtg gcgcaccgga
    53701 tgtgtttgaa caattcaata ccgctgtaca aaaacttgaa gaaattcagg agtgtcattt
    53761 agtatctggt gatttcgact acctgttgaa aacacgcgtg ccggatatgt cagcttaccg
    53821 taagttgctg ggggaaaccc tgctgcgtct gcctggcgtc aatgacacac ggacatacgt
    53881 tgttatggaa gaagtcaagc agagtaatcg tctggttatt aagacgcgct aacacggaac
    53941 aggtgcaaaa tcggcgtatt ttgattacac tcctgttaat ccatacagca acagtactgg
    54001 ggtaacctgg tactgttgtc cgttttagca tcgggcagga aaagcctgta acctggagag
    54061 cctttcttga gccaggaata cactgaagac aaagaagtca cattgacaaa gttaagtagc
    54121 ggccgtcgcc ttctggaagc gttgctgatc cttattgtcc tgtttgccgt ctggttgatg
    54181 gctgccttac taagctttaa cccttcggac cccagctggt cgcaaacggc ctggcatgaa
    54241 cctatccata atttaggtgg gatgcccggt gcgtggctgg cagatacgct gttctttatt
    54301 tttggcgtga tggcttacac cattcccgtc attattgtcg gcggttgttg gtttgcctgg
    54361 cgtcatcagt ccagtgacga atacattgat tattttgccg tttcgttacg catcattggc
    54421 gttttggcgc tcatccttac ctcctgtggt ctggcggcaa tcaacgctga cgatatctgg
    54481 tattttgcct ccggtggcgt cattggcagc ttactaagca ctacgttaca accactgcta
    54541 cacagtagcg ggggaactat tgcgctgctc tgcgtttggg ctgcgggcct gacgctgttc
    54601 accggttggt catgggtgac cattgctgaa aaactcggcg gctggatttt aaacattctc
    54661 accttcgcca gtaatcgtac ccgtcgcgat gatacctggg tcgatgaaga tgaatatgaa
    54721 gatgacgaag agtatgaaga tgaaaaccac ggcaaacagc atgaatcacg ccgtgcccgt
    54781 attcttcgcg gcgcgctagc gcgtcgtaaa cggttggcgg aaaaattcat taatccgatg
    54841 gggcggcaaa cagacgctgc gttgttctcc ggtaagcgga tggatgatga agaagagatt
    54901 atctacactg cacgcggtgt ggctgccgac ccggacgacg tcctattttc gggcaatcgt
    54961 gcaacgcagc cagaatatga cgaatacgat ccattattaa acggtgcgcc aattaccgaa
    55021 cctgttgctg tagcagctgc tgctaccacg gcgacacaaa gctgggctgc gccggttgaa
    55081 cctgtgaccc agacgccgcc tgttacttct gttgatgttc caccttcgca acctacagta
    55141 gcctggcagc ctgtaccggg tccacaaacg ggagagccgg ttattgctcc tgcaccggaa
    55201 ggttacccac agcagccaca atatgcgcag cctgcagtgc aatataatga gccgctgcaa
    55261 caacctgtac agccacagca gccgtattat gcgcctgcag ctgaacaacc tgtgcaacaa
    55321 ccttactacg ctcctgcggc ggaacaacct gttcagcaac cgtattacgc aactgcgccg
    55381 gaacagcctg cgcaacagcc gtattatgcc cctgcgccag aacaaccggt ggcaggtaac
    55441 gcctggcaag ccgaagagca gcaatccact tttgctccac agtctacata ccagactgag
    55501 caaacttatc agcagccagc cgctcaggag ccgttgtacc aacagccgca acccgttgaa
    55561 cagcagcctg ttgtggagcc tgaacccgtt gtagaagaga caaaacccgc gcgtccgccg
    55621 ctttactatt ttgaagaagt ggaagagaag cgagcccgtg aacgtgaaca acttgcggcc
    55681 tggtatcaac cgattccaga accggttaaa gaaccagaac cgatcaaatc ttcgttgaaa
    55741 gcgccttctg ctgcagcagt acctccagta gaagccgctg ccgctgtttc tccgctggca
    55801 tctggcgtga aaaaagcgac actggcgacg ggggctgccg caaccgttgc cgcgccagtc
    55861 ttcagtctgg caaatagcgg tggaccgcgt ccgcaagtca aagagggaat tggcccgcag
    55921 ttgccacgac cgaaacgtat tcgcgtgcca actcgtcgtg aactggcgtc ttacggtatt
    55981 aagctgccct cacagcgtgc ggcggaagag aaagcccgtg aagcccggcg caatcagtat
    56041 gattctggcg atcagtataa cgatgatgaa atcgatgcga tgcagcagga tgaactggca
    56101 cgtcagttcg cccagacaca gcagcaacgc tatggcgaac agtatcaaca tgatgtgccc
    56161 gtaaacgcag aagatgcaga tgctgcggca gaggctgaac tggctcgtca gtttgcgcaa
    56221 actcaacaac aacgttattc cggcgaacaa ccggctgggg cgaatccgtt ctcgctggat
    56281 gattttgaat tttcgccaat gaaagcgttg ctggatgatg gtccacacga accgttgttt
    56341 acgccaattg ttgaacctgt acagcagccg caacaactgg ttgcaccgca gcagcagtat
    56401 cagcagccac aacagccggt tgcgccacag cagcaatatc agcagccgca acagccggtt
    56461 gcgccgcagc cgcagtatca gcagccacaa cagcaggttg cgccgcagcc acaatatcag
    56521 cagccgcaac aaccggttgc accgcagcag caggataccc tgcttcatcc gctgttgatg
    56581 cgtaatggcg acagccgtcc gttgcataaa ccgacgacgc cgctgccttc tctggatttg
    56641 ctgacaccgc cgccgagcga agtggagccg gtagatacct ttgtgcttga acaaatggct
    56701 cgcctggtgg aagcgcgtct ggctgatttc cgtattaaag ccgatgtcgt caattactct
    56761 ccggggccgg ttatcactcg ctttgaactt aacctggctc ctggcgtaaa agcggcgcgc
    56821 atttctaact tgtcacggga ccttgcccgt tcactttcga cggtggcggt gcgtgtcgtt
    56881 gaagttattc ctggcaaacc ctatgtaggt ctggagttac caaataaaaa acgacaaacc
    56941 gtttatctgc gcgaagtttt ggataacgcc aaattccgcg ataatccgtc gccattaacc
    57001 gtggtgctgg gtaaagatat cgccggtgag ccggtggttg ccgatctggc gaaaatgccg
    57061 cacttgttgg ttgcggggac taccggttcc ggtaaatctg tcggtgtgaa cgcgatgatc
    57121 ctgagcatgc tttataaagc acagccagaa gatgtgcgtt tcatcatgat cgacccgaaa
    57181 atgctggagc tttcggttta tgaaggcatt ccgcatctgt taacggaagt cgttactgat
    57241 atgaaagatg ccgccaacgc gctgcgctgg tgtgttaacg agatggagcg tcgttataaa
    57301 ctgatgtctg cgctgggtgt gcgtaatctg gcgggttata acgaaaaaat tgctgaagcc
    57361 gatcgcatga tgcgtccgat tccagacccg tactggaagc cgggtgacag tatggatgcc
    57421 cagcatccgg tgctgaaaaa agaaccatac attgtggtgt tggttgacga atttgccgac
    57481 ctgatgatga cggtaggtaa aaaagtggaa gagctgatag cacgtctggc gcaaaaagcc
    57541 cgtgccgcgg gtatccacct cgtactggca actcagcgtc catcggttga tgttattact
    57601 ggtctgatta aagcgaatat tccgacccgt atcgccttta ccgtatccag taagattgac
    57661 tcacgtacca ttcttgatca ggctggcgcg gaatcactgc tggggatggg ggatatgctc
    57721 tactctgggc cgaactccac gttgccggta cgtgtccatg gtgcttttgt tcgcgatcag
    57781 gaagttcatg ccgtggtgca ggactggaaa gcgcgtggtc gcccacagta tgttgatggc
    57841 atcacttccg acagtgaaag cgaaggtggc gcgggcggtt tcgatggcgc tgaagaactg
    57901 gatccgttgt tcgatcaggc ggtgcagttt gtcactgaaa aacgcaaagc gtcaatttct
    57961 ggcgtacagc gtcagttccg cattggttat aaccgtgcag cgcgtattat cgaacagatg
    58021 gaagcgcagg ggattgtcag cgaacagggg cacaacggta atcgtgaagt gctggcccca
    58081 ccgccgtttg actaattaat gcattgccgg ataaggcgcg gtagcgtcgc atccggcact
    58141 ctatcaactg aaaattcagt attttctttt ttcctcaagc tgattattag cctggaatag
    58201 agagtagagg gaactcccga tcgggagtga cgtaatttga ggaataatga tgaaaaaaat
    58261 tgccatcacc tgtgcattac tctcaagctt agtagcaagc agcgtttggg ctgatgccgc
    58321 aagcgatctg aaaagccgcc tggataaagt cagcagcttc cacgccagct tcacacaaaa
    58381 agtgactgac ggtagcggtg cggcggtgca ggaaggtcag ggcgatctgt gggtgaaacg
    58441 tccaaactta ttcaactggc atatgacaca acctgatgaa agcattctgg tttctgacgg
    58501 taaaacactg tggttctata acccgttcgt tgagcaagct acggcaactt ggctgaaaga
    58561 tgccaccggt aatacgccgt ttatgctgat tgcccgcaac cagtccagcg actggcagca
    58621 gtacaatatc aaacagaatg gcgatgactt tgtcctgacg ccgaaagcca gcaatggcaa
    58681 tctgaagcag ttcaccatta acgtgggacg tgatggcaca atccatcagt ttagcgcggt
    58741 ggagcaggac gatcagcgca gcagttatca actgaaatcc cagcaaaatg gggctgtgga
    58801 tgcagcgaaa tttaccttca ccccgccgca aggcgtcacg gtagatgatc aacgtaagta
    58861 gaggcacctg agtgagcaat ctgtcgctcg atttttcgga taatactttt caacctctgg
    58921 ccgcgcgtat gcggccagaa aatttagcac agtatatcgg ccagcaacat ttgctggctg
    58981 cggggaagcc gttgccgcgc gctatcgaag ccgggcatct gcattctatg atcctctggg
    59041 ggccaccggg taccggcaaa acaactctcg ctgaagtgat tgcccgctat gcgaacgctg
    59101 atgtggaacg tatttctgcc gtcacctctg gcgtgaaaga gattcgcgag gcgatcgagc
    59161 gcgcccggca aaaccgcaat gcaggtcgcc gcactattct ttttgttgac gaagttcacc
    59221 gtttcaacaa aagccagcag gatgcatttc tgccacatat tgaagacggc accatcactt
    59281 ttattggcgc aaccactgaa aacccgtcgt ttgagcttaa ttcggcactg ctttcccgtg
    59341 cccgtgtcta tctgttgaaa tccctgagta cagaggatat tgagcaagta ctaactcagg
    59401 cgatggaaga caaaacccgt ggctatggtg gtcaggatat tgttctgcca gatgaaacac
    59461 gacgcgccat tgctgaactg gtgaatggcg acgcgcgccg ggcgttaaat acgctggaaa
    59521 tgatggcgga tatggccgaa gtcgatgata gcggtaagcg ggtcctgaag cctgaattac
    59581 tgaccgaaat cgcaggtgaa cgtagtgccc gctttgataa caaaggtgat cgcttttacg
    59641 atctcatttc cgcactgcat aaatcggtac gtggtagcgc acccgatgcg gcgctgtact
    59701 ggtatgcgcg aattattact gccggtggcg atccgttata tgttgcgcgt cgctgtctgg
    59761 cgattgcgtc tgaagatgtg ggtaatgctg atccacgagc gatgcaggtg gcaattgcag
    59821 cctgggattg ctttactcgc gttggcccgg cggaaggtga acgcgccatt gctcaggcga
    59881 ttgtttacct ggcctgcgcg ccaaaaagca acgctgtcta cactgcgttt aaagctgcgc
    59941 tggcggatgc tcgcgaacgt ccggattatg acgtgccggt tcatttgcgt aatgcgccga
    60001 cgaaattaat gaaggaaatg ggctacgggc aggaatatcg ttacgctcat gatgaagcaa
    60061 acgcttatgc tgccggtgag gtttacttcc cgcgggaaat agcacaaaca cgctattatt
    60121 tcccgacaaa caggggcctt gaaggcaaga ttggcgaaaa gctcgcctgg ctggctgaac
    60181 aggatcaaaa tagccccata aaacgctacc gttaatgtta tcgttgcggt aatgttgtta
    60241 ctgtatccct gtggtcgcag gctgtggcca catctcccat ttaattcgat aagcacagga
    60301 taagcatgct cgatcccaat ctgctgcgta atgagccaga cgcagtcgct gaaaaactgg
    60361 cacgccgggg ctttaagctg gatgtagata agctgggcgc tctcgaagag cgtcgtaaag
    60421 tattgcaggt caaaacggaa aacctgcaag cggagcgtaa ctcccgatcg aaatccattg
    60481 gccaggcgaa agcgcgcggg gaagatatcg agcctttacg tctggaagtg aacaaactgg
    60541 gcgaagagct ggatgcagca aaagccgagc tggatgcttt acaggctgaa attcgcgata
    60601 tcgcgctgac catccctaac ctgcctgcag atgaagtgcc ggtaggtaaa gacgaaaatg
    60661 acaacgttga agtcagccgc tggggtaccc cgcgtgagtt tgactttgaa gttcgtgacc
    60721 acgtgacgct gggtgaaatg cactctggcc tcgactttgc agctgcagtt aagctgactg
    60781 gttcccgctt tgtggtaatg aaagggcaga ttgctcgcat gcaccgcgca ctgtcgcagt
    60841 ttatgctgga tctgcatacc gaacagcatg gctacagtga gaactatgtt ccgtacctgg
    60901 ttaaccagga cacgctgtac ggtacgggtc agctgccgaa atttgctggc gatctgttcc
    60961 atactcgtcc gctggaagaa gaagcagaca ccagtaacta tgcgctgatc ccaacggcag
    61021 aagttccgct gactaacctg gtgcgcggtg aaatcatcga tgaagatgat ctgccaatta
    61081 agatgaccgc ccacacccca tgcttccgtt ctgaagccgg ttcatatggt cgtgacaccc
    61141 gtggtctgat ccgtatgcac cagttcgaca aagttgaaat ggtgcagatc gtgcgcccgg
    61201 aagactcaat ggcggcgctg gaagagatga ctggtcatgc agaaaaagtc ctgcagctgc
    61261 tgggcctgcc gtaccgtaaa atcatccttt gtaccggcga catgggcttt ggcgcttgca
    61321 aaacctatga cctggaagta tggatcccgg cacagaacac ctaccgtgag atctcttcct
    61381 gctccaacgt ttgggatttc caggcacgtc gtatgcaggc acgttgccgc agcaagtcgg
    61441 acaagaaaac ccgtctggtt cataccctga acggttctgg tctggctgtt ggtcgtacgc
    61501 tggttgcagt aatggaaaac tatcagcagg ctgatggtcg tattgaagta ccagaagttc
    61561 tgcgtccgta tatgaacgga ctggaatata ttggctaata cccaattttt ctgaatctaa
    61621 aaagcgcctg cgggcgcttt ttttgtctcc ctttgatacc gaacaataat tactcctcac
    61681 ttacacgtaa tactactttc gagtgaaaat ctacctatct ctttgatttt caaattattc
    61741 tatgtataca agcctatata gcgagctgct atagaaataa ttacacaata cggtttgtta
    61801 ctggaatcaa tcgtgagcaa gcttgagtga gccattatga aaacgaaaat ccctgatgcg
    61861 gtattggctg ctgaggtgag tcgccgtggt ttggtaaaaa cgacagcgat cggcggcctg
    61921 gcaatggcca gcagcgcatt aacattacct tttagtcgga ttgcgcacgc tgtcgatagc
    61981 gccattccaa caaaatcaga cgaaaaggtt atctggagcg cctgtacagt taactgtggt
    62041 agtcgctgcc cgctacgtat gcacgtcgtg gacggtgaaa tcaaatatgt cgaaacggac
    62101 aataccggcg atgacaatta cgacggcctg cactaggttc gcgcctgcct gcgtgggcgt
    62161 tccatgcgtc gccgtgtcta caatccggac cgcctgaaat atccgatgaa acgagtcggg
    62221 gcgcgcggtg aaggcaaatt cgagcgcatt agctgggaag aagcctacga catcatcgcg
    62281 accaatatgc agcgcctgat caaagagtac ggcaacgagt ctatctatct gaactatggc
    62341 accggtacgc tgggcggcac catgacccgc tcctggccgc cgggaaatac cctggtcgcg
    62401 cggctgatga actgctgcgg cggctatctg aaccattacg gcgactactc ctccgcgcaa
    62461 attgcggaag gtttgaacta tacctacggc ggctgggcag atggcaacag cccgtcggat
    62521 atcgaaaaca gtaagctggt agtgctgttt ggtaataacc ctggcgaaac gcgaatgagt
    62581 ggcagtgggg tgacttacta tcttgaacag gcacgccaga aatctaatgc ccgcatgatc
    62641 atcatcgatc cgcgctatac cgacaccggt gccgggcgcg aagatgagtg gatccctatt
    62701 cgtccgggaa cagatgccgc actggttaac ggtctggcgt acgtcatgat cactgaaaac
    62761 ctggtggatc aggcattcct cgataaatat tgcgttggct acgatgagaa aaccctgcca
    62821 gccagtgcgc cgaaaaatgg ccactataaa gcttatattc tgggtgaagg gccagatggc
    62881 gtggctaaaa caccggaatg ggcctcacaa atcaccggtg ttccggcaga caaaatcatc
    62941 aaactggctc gtgaaatcgg cagtaccaaa ccggcgttta tcagccaggg atggggcccg
    63001 cagcgtcacg ctaacggtga aatcgcaacc cgtgctatct cgatgctggc gattctgacc
    63061 ggtaacgttg gtattaacgg aggcaacagc ggcgcgcgtg aaggttcata cagcttaccg
    63121 tttgtccgta tgccgacctt ggaaaacccg atccagacca gcatttcgat gtttatgtgg
    63181 accgatgcca ttgaacgtgg cccggaaatg acggcgctgc gtgatggtgt acgcgggaaa
    63241 gataagctgg atgtgccgat caaaatgatc tggaactatg ccggtaactg cctgattaac
    63301 cagcattctg aaatcaaccg tacccatgaa atccttcagg atgataagaa gtgcgagctg
    63361 attgtggtta tcgactgcca catgacctca tcggcgaaat atgctgacat cctgctgcct
    63421 gactgcaccg cttccgaaca gatggacttt gcgctgaatg catcctgcgg gaatatgtct
    63481 tacgtgattt tcaacgatca ggtgattaaa ccgcgctttg aatgtaagac catctatgaa
    63541 atgaccagcg aactggcaaa acgtcttggc gttgagcaac agtttactga aggccgtaca
    63601 caggaagagt ggatgcggca tctgtatgcc cagtcgcggg aagcgattcc tgaactacca
    63661 acgtttgaag agttccgcaa gcaggggatc tttaaaaagc gcgacccaca agggcaccac
    63721 gttgcttata aagctttccg tgaagatcct caggcaaatt cactgaccac gccatcgggc
    63781 aaaattgaga tttattcgca ggcgctggct gacattgccg ctacctggga attgccagaa
    63841 ggagatgtga tcgatccact gccgatctac acgccgggct ttgaaagtta tcaggatccg
    63901 ttgaacaaac agtatccgct gcagcttacg ggtttccact ataaatctcg cgttcactca
    63961 acttacggcg acgttgatgt gctgaaagca gcttgccgtc aggaaatgtg gatcaacccg
    64021 cttgatgcgc aaaaacgcgg tatcaacaac ggcgataaag tcaggatctt taacgatctt
    64081 ggtgaggttc atattgaggc gaaagtgacg ccacgaatga tgccgggtgt ggtcgcactg
    64141 ggtgaaggtg cctggtatga cccggataca aaacgtgtcg ataagggcgg ttgtatcaac
    64201 gtactgacca ctcaacgtcc gtctcctctc gctaagggga atccgtcaca tacaaacctt
    64261 gttcaggttg aaaaggtgta aggagtaacc gatgacaacc cagtatggat tttttattga
    64321 ttccagccgt tgcaccggtt gcaaaacctg cgagctggcc tgtaaagact acaaagattt
    64381 gacgccagaa gtcagcttcc gccgcattta tgaatatgct ggcggcgact ggcaggaaga
    64441 taacggtgtc tggcaccaga acgtgtttgc ctactatctg tcgatttcat gtaaccactg
    64501 cgaagatccg gcttgtacta aagtctgccc gagcggtgcg atgcataaac gtgaagatgg
    64561 ttttgttgtg gtcgatgaag atgtgtgcat tggctgccgc tactgccata tggcttgccc
    64621 gtatggcg
//
LOCUS       DAJVSY010000005        58841 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.005, whole genome shotgun sequence.
ACCESSION   DAJVSY010000005 DAJVSY010000000
VERSION     DAJVSY010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 58841)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 58841)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..58841
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.005"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            98..2620
                     /gene="mrcB"
                     /locus_tag="OQQ19_000314"
     CDS             98..2620
                     /gene="mrcB"
                     /locus_tag="OQQ19_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glycosyl
                     transferase/transpeptidase"
                     /protein_id="HCS1802068.1"
                     /translation="MAGNDREPIGRKGKPTRPVKQKVSRRRYEDDDDYDDYDDYEDEE
                     PMPRKGKGKGKGRKPRGKRGWLWLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQL
                     PAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFD
                     FPDSKEGQVRAHLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPR
                     SGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNL
                     FLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYY
                     FGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYD
                     MLSARPLGVQPRGGVISPQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAA
                     EKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSI
                     GSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGLVWSPQNDDRRYSESGRVMLV
                     DALTRSMNVPTVNLGMALGLPAVTDTWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQA
                     FQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGT
                     GRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTITWAGRDNNQPTKLYGASGAM
                     SIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGMRVLPVWTSDPQSLCQQSE
                     MQQQPSGNPFDQSSQPQQQPAQQEQKDSDGVAGWIKDMFGSN"
     gene            2840..5029
                     /gene="fhuA"
                     /locus_tag="OQQ19_000315"
     CDS             2840..5029
                     /gene="fhuA"
                     /locus_tag="OQQ19_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrichrome porin FhuA"
                     /protein_id="HCS1802069.1"
                     /translation="MARSKTAQPKHSLRKIAVVVATAVSGMSVYAQAAVEPKEDTITV
                     TAAPAPQESAWGPAATIAAKHSATATKTDTPIEKTPQSISVVTNEEMQMHQFQSVKEA
                     LGYTPGVTVSSRGASNTYDFVIIRGFSSVGLNQNNYLDGLKLQGNFYNDAVIDPYMLE
                     RVELMRGPTSVLYGKSNPGGIISMVSKRPTTEPLKEIQFKMGTDNLFQTGFDFSDALD
                     DNGEFSYRLTGLARSTNEQQKNSESQRYTIAPSFSWRPDDKTNFTFLSYFQNEPETGY
                     YGWLPKEGTVEPLPNGKRLPTDFNEGASNNTYSRNQKMVGYSFEHGFNDTFTVRQNLR
                     FSEMKTSQKSVYGTGIAGDGHTLNRGTVVDNERLQNFSVDTQLESKFATGDVEHTLLT
                     GVDFMRMRNDINASFGSAPSIDLYNKYHPEYFAFGSAEPYQMNESKQTGIYVQDQAEW
                     NKWVFTLGGRYDWSKQATTVRENSYTPTEGYIERNDHQFTWRGGVNYLFDNGISPYFS
                     YSQSFEPSAFDLWSNPRISYKPSKGEQYEAGVKYVPNDMPVVVTGAVYQLTKTNNLTA
                     DPTNPLAQVPAGEIRARGVELEAKAALNANINLTASYTYTDAEYTKDTNLKGKTPEQV
                     PEHMASLWGDYTFNEGPLSGLTLGTGGRFIGSSYGDPANTFKVGSAAVMDAVVKYDLA
                     RFGMAGSSLAVNVNNLLDREYVASCFQTYGCFWGAERQVVATATFRF"
     gene            5080..5877
                     /gene="fhuC"
                     /locus_tag="OQQ19_000316"
     CDS             5080..5877
                     /gene="fhuC"
                     /locus_tag="OQQ19_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe3+-hydroxamate ABC transporter ATP-binding
                     protein FhuC"
                     /protein_id="HCS1802070.1"
                     /translation="MQEYTNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIG
                     HNGSSKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTV
                     RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM
                     LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYL
                     VALRGGEMIAQGTPAEIMRGDTLEMIYGIPMGILPHPAGAAPVSFVY"
     gene            5877..6767
                     /gene="fhuD"
                     /locus_tag="OQQ19_000317"
     CDS             5877..6767
                     /gene="fhuD"
                     /locus_tag="OQQ19_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-hydroxamate ABC transporter
                     substrate-binding protein FhuD"
                     /protein_id="HCS1802071.1"
                     /translation="MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWL
                     PVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVW
                     SAGYGPSAEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYED
                     FIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWG
                     STAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYG
                     ATLSAMHFVRVLDNAIGGKA"
     gene            6764..8746
                     /gene="fhuB"
                     /locus_tag="OQQ19_000318"
     CDS             6764..8746
                     /gene="fhuB"
                     /locus_tag="OQQ19_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-hydroxamate ABC transporter permease
                     FhuB"
                     /protein_id="HCS1802072.1"
                     /translation="MSKRIALFPALLLALLVIVATALTWMNFSQALPRSQWAQAAWSP
                     DIDVIEQMIFHYSLLPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLG
                     ITVTTLWAIPGAMASQFAALAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAI
                     NQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLD
                     DGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPR
                     LMLASLIGALILWLSDQIILWLTRVWMEVSTGSVTALIGAPLLLWLLPRLRSISAPDM
                     KVNDRVAAERQHVLAFALAGGVLLLMAVVVALSFGRDAHGWMWASGALLDDLMPWRWP
                     RIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWL
                     LPAGSIGAAVTLLIIMIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQV
                     LTWISGSTYNATDAQVWRTGIVMVILLAITPLYRRWLTILPLGGDTARAVGMALTPTR
                     IALLLLAACLTATSTMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFA
                     DWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR"
     gene            complement(8781..10061)
                     /gene="hemL"
                     /locus_tag="OQQ19_000319"
     CDS             complement(8781..10061)
                     /gene="hemL"
                     /locus_tag="OQQ19_000319"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HCS1802073.1"
                     /translation="MSKSENLYSAARELLPGGVNSPVRAFTGVGGTPLFIEKADGAYL
                     YDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTEL
                     VPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTL
                     GQPNSPGVPADFAKHTLTCTYNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPQPE
                     FLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAF
                     GGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTTRLAEG
                     LLEAAEEAGTPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVY
                     LAPSAFEAGFMSVAHSMEDINNTIDAARRVFAKL"
     gene            10286..11707
                     /gene="clcA"
                     /locus_tag="OQQ19_000320"
     CDS             10286..11707
                     /gene="clcA"
                     /locus_tag="OQQ19_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H(+)/Cl(-) exchange transporter ClcA"
                     /protein_id="HCS1802074.1"
                     /translation="MKTDTPSLETPQAARLRRRQLIRQLLERDKTPLAILFMAAVVGT
                     LVGLAAVAFDKGVAWLQNQRMEALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAP
                     EAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGR
                     MVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAV
                     FIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGM
                     QDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLV
                     FIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVVVELFPQYHLEAGTFAIA
                     GMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSEILA
                     RTLAKQEAEQLARSKAASASENT"
     gene            11731..11796
                     /locus_tag="OQQ19_000321"
     CDS             11731..11796
                     /locus_tag="OQQ19_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802075.1"
                     /translation="MAIIIGLEFAQLPMSFGAKYE"
     gene            11789..12133
                     /gene="erpA"
                     /locus_tag="OQQ19_000322"
     CDS             11789..12133
                     /gene="erpA"
                     /locus_tag="OQQ19_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HCS1802076.1"
                     /translation="MSDDVALPLEFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSG
                     FQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNA
                     KSTCGCGSSFSI"
     gene            complement(12180..12803)
                     /locus_tag="OQQ19_000323"
     CDS             complement(12180..12803)
                     /locus_tag="OQQ19_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRIC cation channel family protein"
                     /protein_id="HCS1802077.1"
                     /translation="MLVYWLDIVGTVVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGG
                     TIRDMALDHGPVFWVKDPTDLVVAMVTSMLTIVLVRQPRRLPKWMLPVLDAVGLAVFV
                     GIGVNKAFNAEAGPLIAVCMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGIV
                     HATAYYTFSVPLETASMMGMVVTLLIRLAAIRWHLKLPTFALDENGR"
     gene            complement(12841..13640)
                     /gene="btuF"
                     /locus_tag="OQQ19_000324"
                     /pseudo
     CDS             complement(12841..13640)
                     /gene="btuF"
                     /locus_tag="OQQ19_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414700.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter substrate-binding
                     protein BtuF"
     gene            complement(13633..14331)
                     /gene="mtnN"
                     /locus_tag="OQQ19_000325"
     CDS             complement(13633..14331)
                     /gene="mtnN"
                     /locus_tag="OQQ19_000325"
                     /EC_number="3.2.2.16"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/S-adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HCS1802078.1"
                     /translation="MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVA
                     LLKSGIGKVAAALGATLLLEHGKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADV
                     TAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAK
                     IRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQS
                     SLMVESLVQKLAHG"
     gene            14415..15932
                     /gene="dgt"
                     /locus_tag="OQQ19_000326"
     CDS             14415..15932
                     /gene="dgt"
                     /locus_tag="OQQ19_000326"
                     /EC_number="3.1.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dGTPase"
                     /protein_id="HCS1802079.1"
                     /translation="MAQIDFRKKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPA
                     IRRLQQKTQVFPLERNAAVRTRLTHSMEVQQVGRYIAKEILSRMKELKLLEAYGLDEL
                     TGPFESIVEMSCLMHDIGNPPFGHFGEAAINDWFRQRLHPEDAESQPLTDDRCSVAAL
                     RLRDGEEPLNELRRKIRQDLCHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWW
                     RGETPETHHYLMKKPGYYLSEEAYIARLRKELNLALYSRFPLTWIMEAADDISYCVAD
                     LEDAVEKRIFTVEQLYHHLHEAWGQHEKGSLFSLVVENAWEKSRSNSLSRSTEDQFFM
                     YLRVNTLNKLVPYAAQRFIDNLPAIFAGTFNHALLEDASECSDLLKLYKNVAVKHVFS
                     HPDVEQLELQGYRVISGLLEIYRPLLSLSLSDFTELVEKERVKRFPIESRLFHKLSTR
                     HRLAYVEAVSKLPSDSPEFPLWEYYYRCRLLQDYISGMTDLYAWDEYRRLMAVEQ"
     gene            16062..17486
                     /gene="degP"
                     /locus_tag="OQQ19_000327"
     CDS             16062..17486
                     /gene="degP"
                     /locus_tag="OQQ19_000327"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine endoprotease DegP"
                     /protein_id="HCS1802080.1"
                     /translation="MKKTTLALSALALSLGLALSPLSATAAETSSATTAQQMPSLAPM
                     LEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGN
                     GGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRS
                     DIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNA
                     ENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNL
                     TSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGD
                     VITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSS
                     IFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKV
                     LDSKPSVLALNIQRGDSTIYLLMQ"
     gene            17641..18798
                     /gene="cdaR"
                     /locus_tag="OQQ19_000328"
     CDS             17641..18798
                     /gene="cdaR"
                     /locus_tag="OQQ19_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CdaR"
                     /protein_id="HCS1802081.1"
                     /translation="MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERI
                     GELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLR
                     KYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDL
                     NQPRVVAIVEVDSGQLGVDSAMAELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNS
                     FGRWDAEDHRKRVEQLITRMKEYGRLRFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQ
                     RMPESRCYFYQDLMLPVLLDSLRGDWQANELARPLARLKAMDNNGLLRRTLAAWFRHN
                     VQPLATSKALFIYRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEER"
     gene            complement(18887..19273)
                     /locus_tag="OQQ19_000329"
     CDS             complement(18887..19273)
                     /locus_tag="OQQ19_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000272186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3461 family protein"
                     /protein_id="HCS1802082.1"
                     /translation="MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDKGEFFAK
                     SVKFKYPRQRKTVVADGVGQGYKEVQEISPNLRYIIDELDQICQRDRSEVDLKRKILD
                     DLRHLESVVTNKISEIEADLEKLTRK"
     gene            complement(19435..20247)
                     /gene="yaeI"
                     /locus_tag="OQQ19_000330"
     CDS             complement(19435..20247)
                     /gene="yaeI"
                     /locus_tag="OQQ19_000330"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414706.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase YaeI"
                     /protein_id="HCS1802083.1"
                     /translation="MISRRRLLQATAATIATSSGFGYMHYWEPGWFELIRHRLAFFKD
                     NAAPFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFS
                     DVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSVGITVLFNQATVIATPNRQFE
                     LVGTGDLWAGQCKPPPASEANLPRLMLAHNPDSKEVMRDEPWDLMLCGHTHGGQLRVP
                     LVGEPFAPVEDKRYVAGLNAFGERHIYTTRGVGSLYGLRLNCRPEVTMLELV"
     gene            complement(20302..21126)
                     /gene="dapD"
                     /locus_tag="OQQ19_000331"
     CDS             complement(20302..21126)
                     /gene="dapD"
                     /locus_tag="OQQ19_000331"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HCS1802084.1"
                     /translation="MQQLQNIIETAFERRAEITPTNADTVTREAVNQVIALLDSGALR
                     VAEKIDGQWVTHQWLKKAVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEG
                     FRVVPPAAVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG
                     GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRE
                     TGEIHYGHVPAGSVVVSGNLPSKDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID"
     gene            complement(21157..23829)
                     /gene="glnD"
                     /locus_tag="OQQ19_000332"
     CDS             complement(21157..23829)
                     /gene="glnD"
                     /locus_tag="OQQ19_000332"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     uridylyltransferase/uridylyl-removing protein GlnD"
                     /protein_id="HCS1802085.1"
                     /translation="MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQ
                     RWLGDAFDNGISAEQLIEARTEFIDQLLQRLWIEAGFSQIADLALVAVGGYGRGELHP
                     LSDIDLLILSRKKLPDDQAQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVAT
                     NLIESRLLIGDVALFLELQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPD
                     IKSSPGGLRDIHTLQWVARRHFGATSLDEMVGFGFLTSAERAELNECLHILWRIRFAL
                     HLVVSRYDNRLLFDRQLSVAQRLNYSGEGNEPVERMMKDYFRVTRRVSELNQMLLQLF
                     DEAILALPADEKPRPIDDEFQLRGTLIDLRDETLFMRQPEAILRMFYTMVRNSAITGI
                     YSTTLRQLRHARRHLQQPLCNIPEARKLFLSILRHPGAVRRGLLPMHRHSVLGAYMPQ
                     WSHIVGQMQFDLFHAYTVDEHTIRVMLKLESFASEETRQRHPLCVDVWPRLPSTELIF
                     IAALFHDIAKGRGGDHSILGAQDVVHFAELHGLNSRETQLVAWLVRQHLLMSVTAQRR
                     DIQDPEVIKQFAEEVQTENRLRYLVCLTVADICATNETLWNSWKQSLLRELYFATEKQ
                     LRRGMQNTPDMRERVRHHQLQALALLRMDNIDEEALHQIWSRCRANYFVRHSPNQLAW
                     HARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQI
                     FTTRDGMAMDTFIVLEPDGSPLSADRHEVIRFGLEQVLTQSSWQPPQPRRQPAKLRHF
                     TVETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVED
                     LFIIATADRRALNNELQQEVHQRLTEALNPNDKG"
     gene            complement(23891..24685)
                     /gene="map"
                     /locus_tag="OQQ19_000333"
     CDS             complement(23891..24685)
                     /gene="map"
                     /locus_tag="OQQ19_000333"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HCS1802086.1"
                     /translation="MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRI
                     CNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIK
                     DGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAE
                     GFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMK
                     DGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISHDE"
     gene            25053..25778
                     /gene="rpsB"
                     /locus_tag="OQQ19_000334"
     CDS             25053..25778
                     /gene="rpsB"
                     /locus_tag="OQQ19_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HCS1802087.1"
                     /translation="MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLE
                     KTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLT
                     NWKTVRQSIKRLKDLETQSQDGTFEKLTKKEALMRTRELEKLENSLGGIKDMGGLPDA
                     LFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVA
                     ATVREGRSQDLASQAEESFVEAE"
     gene            26036..26887
                     /gene="tsf"
                     /locus_tag="OQQ19_000335"
     CDS             26036..26887
                     /gene="tsf"
                     /locus_tag="OQQ19_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HCS1802088.1"
                     /translation="MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKS
                     GAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVA
                     GKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKG
                     ADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG
                     RMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEV
                     AAMSKQS"
     gene            27034..27759
                     /gene="pyrH"
                     /locus_tag="OQQ19_000336"
     CDS             27034..27759
                     /gene="pyrH"
                     /locus_tag="OQQ19_000336"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000224576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HCS1802089.1"
                     /translation="MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKEL
                     VELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNA
                     RLMSAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADV
                     VLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVF
                     NMNKPGALRRVVMGEKEGTLITE"
     gene            28051..28608
                     /gene="frr"
                     /locus_tag="OQQ19_000337"
     CDS             28051..28608
                     /gene="frr"
                     /locus_tag="OQQ19_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000622421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HCS1802090.1"
                     /translation="MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEY
                     YGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPL
                     PPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDV
                     QKLTDAAIKKIEAALADKEAELMQF"
     gene            28700..29896
                     /gene="ispC"
                     /locus_tag="OQQ19_000338"
     CDS             28700..29896
                     /gene="ispC"
                     /locus_tag="OQQ19_000338"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HCS1802091.1"
                     /translation="MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVE
                     QCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIV
                     GAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSL
                     PQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKI
                     SVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDM
                     RTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTA
                     LNAANEITVAAFLAQQIRFTDIAALNLSVLEKMDMREPQCVDDVLSVDANAREVARKE
                     VMRLAS"
     gene            30084..30842
                     /gene="ispU"
                     /locus_tag="OQQ19_000339"
                     /gene_synonym="uppS"
     CDS             30084..30842
                     /gene="ispU"
                     /locus_tag="OQQ19_000339"
                     /gene_synonym="uppS"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308203.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl-diphosphate-specific
                     ditrans,polycis-undecaprenyl-diphosphate synthase"
                     /protein_id="HCS1802092.1"
                     /translation="MLSATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKA
                     GAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRH
                     NVRLRIIGDTSRFNSRLQECIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEK
                     VQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFIDV
                     LWPDFDEQDFEGALNAFANRERRFGGTEPGDETA"
     gene            30855..31712
                     /gene="cdsA"
                     /locus_tag="OQQ19_000340"
     CDS             30855..31712
                     /gene="cdsA"
                     /locus_tag="OQQ19_000340"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414717.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HCS1802093.1"
                     /translation="MLKYRLISAFVLIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWG
                     QLSGFTTRSQRVWLAVLCGLLLALMLFLLPEYHRNIHQPLVEISLWASLGWWIVSLLL
                     VLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLYVMIL
                     VWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVAPV
                     TLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFAC
                     LLLLVFRTL"
     gene            31724..33076
                     /gene="rseP"
                     /locus_tag="OQQ19_000341"
     CDS             31724..33076
                     /gene="rseP"
                     /locus_tag="OQQ19_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma E protease regulator RseP"
                     /protein_id="HCS1802094.1"
                     /translation="MLSFLWDLASFIVALGVLITVHEFGHFWVARRCGVRVERFSIGF
                     GKALWRRTDKLGTEYVIALIPLGGYVKMLDERAEPVVPELRHHAFNNKSVGQRAAIIA
                     AGPVANFIFAIFAYWLVFIIGVPGVRPVVGEIAANSIAAEAQIAPGTELKAVDGIETP
                     DWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHWAFEPDKEDPVSSLGIRPR
                     GLQIEPVLENVQPNSAASKAGLQAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEI
                     ERQGSLLSLTLIPESKPGNGKAIGFVGIEPKVIPLPDEYKVVRQYGPFNAIVEATDKT
                     WQLMKLTVSMLGKLITGDVKLNNLSGPISIAKGAGMTAELGVVYYLPFLALISVNLGI
                     INLFPLPVLDGAHLLFLAIEKIKGGPVSERVQDFCYRIGSILLVLLMGLALFNDFSRL
                     "
     gene            33106..35538
                     /gene="bamA"
                     /locus_tag="OQQ19_000342"
     CDS             33106..35538
                     /gene="bamA"
                     /locus_tag="OQQ19_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HCS1802095.1"
                     /translation="MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALL
                     SMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGN
                     KSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPR
                     NRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQK
                     LAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGN
                     LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKT
                     VKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRL
                     GFFETVDTDTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWL
                     GTGYAVGINGTKNDYQTYAELSVTNPYFTVDGVSLGGRLFYNDFQADDADLSDYTNKS
                     YGTDVTLGFPINEYNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGEHPSTSDQDNSFK
                     TDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVTLDTATYVPIDDD
                     HKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYFPHQASNY
                     DPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFITPTPFISDKYANSVRTSFFWD
                     MGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDK
                     AEQFQFNIGKTW"
     gene            35660..36145
                     /gene="skp"
                     /locus_tag="OQQ19_000343"
                     /gene_synonym="hlpA"
                     /gene_synonym="ompH"
     CDS             35660..36145
                     /gene="skp"
                     /locus_tag="OQQ19_000343"
                     /gene_synonym="hlpA"
                     /gene_synonym="ompH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone Skp"
                     /protein_id="HCS1802096.1"
                     /translation="MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSN
                     TLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFE
                     QDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQV
                     K"
     gene            36149..37174
                     /gene="lpxD"
                     /locus_tag="OQQ19_000344"
     CDS             36149..37174
                     /gene="lpxD"
                     /locus_tag="OQQ19_000344"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HCS1802097.1"
                     /translation="MPSIRLADLAQQLDAELHGDGDIVITGVASMQSAQTGHITFMVN
                     PKYREHLGLCQASAVVMTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAP
                     SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTI
                     YHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRG
                     ALDDTVIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGH
                     MEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDDMSKRLKSLE
                     RKVNQQD"
     gene            37279..37734
                     /gene="fabZ"
                     /locus_tag="OQQ19_000345"
     CDS             37279..37734
                     /gene="fabZ"
                     /locus_tag="OQQ19_000345"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000210741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HCS1802098.1"
                     /translation="MTTNTHTLQIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNV
                     SVNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFK
                     RPVVPGDQMIMEVTFEKTRRGLTRFKGVALVDGKVVCEATMMCARSREA"
     gene            37738..38526
                     /gene="lpxA"
                     /locus_tag="OQQ19_000346"
     CDS             37738..38526
                     /gene="lpxA"
                     /locus_tag="OQQ19_000346"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HCS1802099.1"
                     /translation="MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVGIGEGTVL
                     KSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGT
                     VQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVH
                     QFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNA
                     YKLIYRSGKTLDEVKPEIAELAETYPEVKAFTDFFSRSTRGLIR"
     gene            38526..39674
                     /gene="lpxB"
                     /locus_tag="OQQ19_000347"
     CDS             38526..39674
                     /gene="lpxB"
                     /locus_tag="OQQ19_000347"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HCS1802100.1"
                     /translation="MTEQRPLTIALVAGETSGDILGAGLIRALKERVPNARFVGVAGP
                     RMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTKRFGELKPDVFVGIDAPDF
                     NITLEGNLKKQGIKTIHYVSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVP
                     CRFIGHTMADAMPLDPDKNAARDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQL
                     LRQTYPDLEIVVPLVNAKRREQFERIKAEVAPDFSVHLLDGMGREAMVASDAALLASG
                     TAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTDYVSLPNLLAGRELVKELLQEECEP
                     QKLAAALLPLLANGKISHAMHDTFRELHQQIRCNADEQAAQAVLELAQ"
     gene            39671..40267
                     /gene="rnhB"
                     /locus_tag="OQQ19_000348"
     CDS             39671..40267
                     /gene="rnhB"
                     /locus_tag="OQQ19_000348"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HCS1802101.1"
                     /translation="MIEFVYPHTQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLN
                     DSKKLSEKRRLALCEEIKEKALSWSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAP
                     EYVLIDGNRCPKLPMPAMVVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFA
                     QHKGYPTAFHLEKLAEHGATEHHRRSFGPVKRALGLAS"
     gene            40304..43786
                     /gene="dnaE"
                     /locus_tag="OQQ19_000349"
     CDS             40304..43786
                     /gene="dnaE"
                     /locus_tag="OQQ19_000349"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HCS1802102.1"
                     /translation="MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDF
                     TNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLIS
                     KAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEE
                     HFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVA
                     IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEY
                     FLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQ
                     MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL
                     NPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG
                     HPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNA
                     GKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIN
                     WALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ
                     PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYG
                     IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGVNAEL
                     AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV
                     GLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG
                     GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK
                     AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKE
                     IERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVML
                     FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYASGLAISL
                     TDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDL
                     RGLIGSEQVELEFD"
     gene            43799..44758
                     /gene="accA"
                     /locus_tag="OQQ19_000350"
     CDS             43799..44758
                     /gene="accA"
                     /locus_tag="OQQ19_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HCS1802103.1"
                     /translation="MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLR
                     EKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIV
                     GGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITF
                     IDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVN
                     MLQYSSYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAH
                     RNPEAMAASLKAQLLADLADLDVLSTEDLKNRRYQRLMSYGYA"
     gene            44857..46966
                     /gene="ldcC"
                     /locus_tag="OQQ19_000351"
                     /pseudo
     CDS             44857..46966
                     /gene="ldcC"
                     /locus_tag="OQQ19_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414728.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lysine decarboxylase LdcC"
     gene            47023..47412
                     /locus_tag="OQQ19_000352"
     CDS             47023..47412
                     /locus_tag="OQQ19_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308216.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HCS1802104.1"
                     /translation="MLGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSW
                     KGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLAFSVDDIDAAVAHLESHNVKCEA
                     IRVDPYTQKRFTFFNDPDGLPLELYEQ"
     gene            47477..48775
                     /gene="tilS"
                     /locus_tag="OQQ19_000353"
     CDS             47477..48775
                     /gene="tilS"
                     /locus_tag="OQQ19_000353"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HCS1802105.1"
                     /translation="MTLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVTL
                     RAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFA
                     RTLLPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTR
                     GELAQWALAHGLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAE
                     QESLLDELLADDLAHCQTSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALV
                     RIWQEVALAREDASPCLRLGAFEIRRYQSQLWWIKSVTGQSETIVPWQTWLQPLELPA
                     GLGSVQLTAGGDIRPPRADEAVSVRFKSAGLLHIVGRNGGRKLKKIWQELGVPPWLRD
                     TTPLLFYGETLIAAAGVFVTQEGVAEGENGVSFVWQKTLS"
     gene            complement(48824..49084)
                     /gene="rof"
                     /locus_tag="OQQ19_000354"
     CDS             complement(48824..49084)
                     /gene="rof"
                     /locus_tag="OQQ19_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rho-binding antiterminator"
                     /protein_id="HCS1802106.1"
                     /translation="MLMNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASD
                     LVSRKNVEYLVVEAAGETRELRLDKITSFSHPEIGTVVVSES"
     gene            complement(49071..49271)
                     /locus_tag="OQQ19_000355"
     CDS             complement(49071..49271)
                     /locus_tag="OQQ19_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeP family protein"
                     /protein_id="HCS1802107.1"
                     /translation="MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALS
                     EAVREKAAYAAANLLVSDYVNE"
     gene            49437..49982
                     /locus_tag="OQQ19_000356"
     CDS             49437..49982
                     /locus_tag="OQQ19_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeQ family protein"
                     /protein_id="HCS1802108.1"
                     /translation="MALKATIYKATVNVADLDRNQFLDASLTLARHPSETQERMMLRL
                     LAWLKYADERLQFTRGLCADDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQAAEV
                     ALFTYNSRAAQIWWQQNQSKCVQFANLSVWYLDDEQLAKVSAFADRTMTLQATIQDGV
                     IWLSDDKNNLEVNLTAWQQPS"
     gene            49979..50401
                     /gene="arfB"
                     /locus_tag="OQQ19_000357"
     CDS             49979..50401
                     /gene="arfB"
                     /locus_tag="OQQ19_000357"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HCS1802109.1"
                     /translation="MIVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIR
                     ASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAVIKDLTTEQ
                     KARRPTRPTRASKERRLASKAQKSSAKAMRGKVRSGRE"
     gene            50415..51125
                     /gene="nlpE"
                     /locus_tag="OQQ19_000358"
                     /gene_synonym="cutF"
     CDS             50415..51125
                     /gene="nlpE"
                     /locus_tag="OQQ19_000358"
                     /gene_synonym="cutF"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308221.1"
                     /note="NlpE, an outer membrane lipoprotein, interacts
                     directly with CpxA, the sensor histidine kinase of the Cpx
                     system for response to envelope stress; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response activation lipoprotein
                     NlpE"
                     /protein_id="HCS1802110.1"
                     /translation="MVKKAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPMPQS
                     WRGVLPCADCEGIETSLFLEKDGTWVMNERYLGAREEPSSFASHGTWARTADKLVLTD
                     SKGEKSYYRAKGDALEMLDREGNPIESQFNYTLEPAQSSLPMTPMTLRGMYFYMADAA
                     TFTDCATGKRFMVANNAELERGYLAARGHSEKPVLLSVEGHFTLEANPDTGAPTKVLA
                     PDTAGKFYPNKDCSSLGQ"
     gene            complement(51325..52145)
                     /locus_tag="OQQ19_000359"
                     /pseudo
     CDS             complement(51325..52145)
                     /locus_tag="OQQ19_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414735.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YaeF family permuted papain-like enzyme"
     gene            complement(52198..53916)
                     /gene="proS"
                     /locus_tag="OQQ19_000360"
     CDS             complement(52198..53916)
                     /gene="proS"
                     /locus_tag="OQQ19_000360"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HCS1802111.1"
                     /translation="MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLP
                     TGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGER
                     PFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDA
                     YSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGE
                     DDVVFSDTSDYAANIELAEAIAPKEPRAAATQEMTLVDTPNAKTIAELVEQFNLPIEK
                     TVKTLLVKAVEGSSFPLVALLVRGDHELNEVKAEKLPQVASPLTFATEEEIRAVVKAG
                     PGSLGPVNMPIPVVIDRTVAAMSDFAAGANIDGKHYFGINWDRDVATPEVADIRNVVA
                     GDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCYGIGVTR
                     VVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQGIEVL
                     LDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVEYL
                     VKQIKG"
     gene            complement(54027..54734)
                     /gene="tsaA"
                     /locus_tag="OQQ19_000361"
     CDS             complement(54027..54734)
                     /gene="tsaA"
                     /locus_tag="OQQ19_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HCS1802112.1"
                     /translation="MSSFQFEQIGVIRSPYKEKFAVPRQPGLVKSANGELHLIAPYNQ
                     ADAVRGLEAFSHLWILFVFHQTMEGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGM
                     SLVELKEVVCHKDSVILKLGSLDLVDGTPVVDIKPYLPFAESLPDASASYAQSAPAAE
                     MAVSFTAEVEKQLLTLEKRYPQLTLFIREVLAQDPRPAYHKGEETGKTYAVWLHDFNV
                     RWRVTDAGFEVFALEPR"
     gene            complement(54731..55135)
                     /gene="rcsF"
                     /locus_tag="OQQ19_000362"
     CDS             complement(54731..55135)
                     /gene="rcsF"
                     /locus_tag="OQQ19_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rcs stress response system protein RcsF"
                     /protein_id="HCS1802113.1"
                     /translation="MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAP
                     RATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKAN
                     AVLLHSCEVTSGTPGCYRQAVCIGSALNITAK"
     gene            complement(55253..56068)
                     /gene="metQ"
                     /locus_tag="OQQ19_000363"
     CDS             complement(55253..56068)
                     /gene="metQ"
                     /locus_tag="OQQ19_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     lipoprotein MetQ"
                     /protein_id="HCS1802114.1"
                     /translation="MAFKFKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQ
                     VAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYK
                     LVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDG
                     VGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGI
                     FVEDKDSPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW"
     gene            complement(56108..56761)
                     /gene="metI"
                     /locus_tag="OQQ19_000364"
     CDS             complement(56108..56761)
                     /gene="metI"
                     /locus_tag="OQQ19_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease MetI"
                     /protein_id="HCS1802115.1"
                     /translation="MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPG
                     QIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAP
                     FIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY
                     SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK"
     gene            complement(56754..57785)
                     /gene="metN"
                     /locus_tag="OQQ19_000365"
     CDS             complement(56754..57785)
                     /gene="metN"
                     /locus_tag="OQQ19_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014168731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein
                     MetN"
                     /protein_id="HCS1802116.1"
                     /translation="MIKLSNITKVFHQGTRIIQALNNVSLHVPAGQIYGVIGASGAGK
                     STLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGN
                     VALPLELDNTPKDEIKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK
                     VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE
                     LIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAEPFTDCVPMLRLEFTGQ
                     SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHH
                     VKVEVLGYV"
     gene            57973..58545
                     /gene="gmhB"
                     /locus_tag="OQQ19_000366"
     CDS             57973..58545
                     /gene="gmhB"
                     /locus_tag="OQQ19_000366"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HCS1802117.1"
                     /translation="MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKK
                     MGFVLVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEE
                     FRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAAAANVGTKVLVRTGKP
                     ITPEAENAADWVLNSLADLPQAIKKQQKPA"
BASE COUNT        14048 a        14494 c        16108 g        14191 t
ORIGIN      
        1 accgatcgaa cacaaatttt gagagatatc ttcttctgtc ttgtaacaga agaacagaaa
       61 atcgggcttt tgcgcctgaa tattgcggag aaaaagcatg gccgggaatg accgcgagcc
      121 aattggacgc aaagggaaac cgacgcgtcc ggtcaaacaa aaggtaagcc gtcgtcgtta
      181 cgaagatgac gatgattacg acgattatga tgactatgag gatgaagaac cgatgccgcg
      241 caaaggtaag ggcaaaggca aagggcgtaa gcctcgtggc aaacgcggct ggctatggct
      301 actgctaaaa ctggctatcg tttttgccgt gctgatcgcc atttacggcg tttatctcga
      361 tcaaaaaatt cgtagccgta ttgatggcaa ggtctggcaa ctgcctgcag cagtttatgg
      421 ccgaatggtc aatcttgagc cagatatgac catcagcaag aacgagatgg tgaagctgct
      481 ggaggcgact cagtatcgtc aggtgtcgaa aatgacccgt cctggcgaat ttaccgtgca
      541 ggccaacagc attgagatga tccgccgtcc gtttgatttc ccggacagta aagaagggca
      601 ggtgcgtgcg catctgacct ttgatggtga tcatctggcg accatcgtca atatggagaa
      661 caaccgtcag ttcggctttt tccgtcttga tccgcgtctg atcaccatga tctcctcgcc
      721 aaacggtgag caacgtctgt ttgtgccgcg cagtggtttc cctgatttgc tggtggatac
      781 tttgctggcg acagaagacc gccatttcta cgagcatgat gggatcagcc tctactcaat
      841 tgggcgtgcg gtgctggcaa acctgaccgc aggtcgcacg gtgcagggtg cgagtacgct
      901 gacgcaacag ctggtgaaaa acctgttcct ctccagcgag cgctcttact ggcgtaaagc
      961 gaacgaagcc tacatggcgc tgatcatgga cgcgcgttac agcaaagacc gtattcttga
     1021 gctgtatatg aacgaggtgt atctcggtca gagcggcgac aacgaaatcc gcggcttccc
     1081 gctggcaagc ttgtattact ttggtcgccc ggtagaagag ctaagcctcg accagcaggc
     1141 gctgttagtc ggtatggtga aaggggcgtc catctacaac ccgtggcgta acccgaaact
     1201 ggcgctggag cgacgtaatc tggtgctgcg tctgctgcaa cagcaacaga ttattgatca
     1261 agaactctat gacatgttga gtgcccgtcc gctgggggtt cagccgcgcg gtggggtgat
     1321 ctctcctcag ccagccttta tgcaactggt gcgtcaggag ctgcaggcaa aactgggcga
     1381 taaggtaaaa gatctctccg gcgtgaagat cttcactacc tttgactcgg tggcccagga
     1441 cgcggcagaa aaagccgccg tggaaggcat tccggcactg aagaaacagc gtaagttgag
     1501 cgatcttgaa actgcgattg tggtcgtcga ccgctttagt ggtgaagttc gtgcgatggt
     1561 gggaggttct gagccgcagt ttgcgggcta caaccgtgcg atgcaggcgc gtcgttcgat
     1621 tggttccctt gcaaaaccag cgacttatct gacggcttta agccagccga aaatctatcg
     1681 cctgaacacg tggattgccg atgcgccaat cgcgctgcgt cagccgaatg gcctggtctg
     1741 gtcaccgcag aacgatgacc gtcgttatag cgaaagcggc agagtgatgc tggtggatgc
     1801 gttgacccgt tcgatgaacg tgccgacggt aaatctgggg atggcgctgg ggctgcctgc
     1861 agttacggat acctggatca aactgggcgt accgaaagat cagctgcatc cggttccggc
     1921 gatgctgctg ggggcgttga acttaacgcc aatcgaagtg gcgcaggcgt tccagaccat
     1981 cgccagcggt ggtaaccgtg caccgctttc tgcactgcgt tcggtaatcg cggaagatgg
     2041 caaggtgctg tatcagagct tcccgcaggc agaacgcgct gttccggcgc aggcggcgta
     2101 tctgacacta tggaccatgc agcaggtggt acaacgtggt acgggtcgtc agcttggggc
     2161 gaaatacccg aacctgcatc tggcagggaa aacagggact accaacaata acgtagatac
     2221 ttggtttgca ggcattgacg gcagcacggt gaccatcacc tgggcaggcc gtgataacaa
     2281 ccagccgacc aaactgtatg gagccagcgg ggcaatgtcg atttatcagc gttatctggc
     2341 taaccagacg ccaacgccgc tgaatcttgt tccgccagaa gatattgcag atatgggcgt
     2401 ggactacgac ggcaactttg tttgcagcgg tggcatgcgt gtcttgccgg tctggaccag
     2461 cgatccgcaa tcgctgtgcc agcagagcga gatgcagcag cagccgtcag gcaatccgtt
     2521 tgatcagtct tctcagccgc aacagcaacc tgctcagcaa gagcagaaag acagcgacgg
     2581 tgtagccggt tggatcaagg atatgtttgg tagtaattaa catctaagcg tgaaataccg
     2641 gatggcgagt tgccatccgg taaaataaca tcccatctaa gatattaacc ctttcttttc
     2701 atctggttgt ttattaaccc ttcaggaacg ctcagattgc gtaccgcttg cgaacccgcc
     2761 agcgtttcga atattatctt atctttataa taatcattct cgtttacgtt atcattcact
     2821 ttacatcaga gatataccaa tggcgcgttc caaaactgct cagccaaaac actcactgcg
     2881 taaaatcgca gttgtagtag ccacagcggt tagcggcatg tctgtttatg cacaggcagc
     2941 ggttgaaccg aaagaagaca ctatcaccgt taccgctgca cctgcgccgc aagaaagcgc
     3001 atgggggcct gctgcaacta ttgcggcgaa gcactctgct actgcgacta aaacggatac
     3061 accaattgaa aaaacgccgc agtctatttc ggttgtgaca aatgaagaga tgcagatgca
     3121 tcaatttcag tctgtaaaag aagcattagg ttatacacct ggcgttacgg ttagcagtcg
     3181 tggtgcttct aatacatatg attttgttat cattcgtggt ttctcatctg ttggtctgaa
     3241 tcaaaataat taccttgatg gactaaaact tcagggcaac ttttataacg atgctgtgat
     3301 tgatccttac atgctcgaga gggttgaact gatgcgtggg ccgacgtctg ttctctatgg
     3361 aaaaagtaat cctggtggga ttatttctat ggtgagtaag cgtccgacca ctgaacccct
     3421 gaaagaaatt cagtttaaaa tggggacgga taatctgttt cagaccggat tcgatttcag
     3481 tgatgcactg gatgataacg gtgagttctc ttaccgtttg acgggcctcg ctcgctcaac
     3541 aaacgaacag cagaaaaact ctgaatctca gcgttatacc attgctccat cattctcatg
     3601 gcgtccagac gacaaaacca attttacttt cctgtcctat ttccagaatg aaccagaaac
     3661 gggttattac ggttggttgc cgaaagaggg gaccgttgag ccattgccta atggtaagcg
     3721 tctaccgact gacttcaatg aaggtgcatc gaataataca tactcccgta accagaaaat
     3781 ggtgggatat agttttgaac atggttttaa tgacaccttc accgtgcgtc agaatctgcg
     3841 tttcagtgaa atgaaaacct cacagaaaag tgtttatggc acagggattg ctggtgatgg
     3901 tcatacccta aaccgcggga cagtggtgga taatgagcgt ctacaaaact ttagcgttga
     3961 tacccaactt gaaagtaagt ttgctacagg tgacgtcgag catactttgc tgacaggggt
     4021 agacttcatg cggatgcgta atgatatcaa tgccagcttt ggatccgcac catccatcga
     4081 tctttataac aaatatcacc ctgaatactt tgcatttggt agcgcagagc cataccagat
     4141 gaatgaaagc aaacaaacag gtatttatgt tcaggatcag gcggaatgga ataaatgggt
     4201 attcactctg gggggacgct acgattggtc taagcaagcg accactgttc gtgaaaactc
     4261 ttatacgccg actgaaggtt atattgagcg caatgatcat cagttcacct ggcgcggtgg
     4321 tgtaaattac ttattcgata atggtatttc accttacttt agctatagcc agtcctttga
     4381 accgagtgct ttcgatctgt ggagcaaccc acgcatttcc tataagccat cgaaaggtga
     4441 acagtatgaa gctggcgtaa aatatgttcc gaatgatatg ccggtcgttg ttacgggcgc
     4501 agtctatcaa ttgacgaaaa caaataacct gacagcagac ccaacaaacc cattagcgca
     4561 agtcccagca ggtgagattc gcgctcgtgg tgtggaactt gaagcaaaag cggcgttaaa
     4621 tgccaatatt aacttgacgg cttcttatac ctacaccgat gcggaataca ccaaagacac
     4681 caatctcaaa ggtaaaactc cagaacaagt accggagcat atggcatctc tctgggggga
     4741 ttataccttc aatgaagggc cgctttctgg tttaacattg ggaacaggtg gtcgttttat
     4801 tggttccagc tatggtgatc cggcaaacac ttttaaagtg ggtagcgcag ctgtaatgga
     4861 tgctgttgta aaatatgatc tggcacgctt tggtatggcg ggatccagcc ttgctgtgaa
     4921 cgtcaacaat ttgctcgatc gtgagtatgt tgccagttgc ttccagactt atggctgctt
     4981 ctggggcgca gaacgtcagg tcgttgcaac cgcaaccttc cgtttctaat ttctcttttg
     5041 gggcacggat ttccgtgccc atttcacaag ttggctgtta tgcaggaata cacgaatcat
     5101 tccgatacca cttttgcact gcgtaatatc tcctttcgtg tgcccgggcg cacgcttttg
     5161 catccgctgt cgttaacctt tcctgccggg aaagtgaccg gtctgattgg tcacaacggt
     5221 tctagtaaat ccactctgct caaaatgctt ggccgtcatc agcctccgtc agaaggggag
     5281 attcttcttg atgcccagcc gctggaaagc tggagcagca aagcgtttgc ccgcaaagtg
     5341 gcttatttgc cgcagcagct tcctccggca gaagggatga ccgtgcgtga actggtggcg
     5401 attggtcgtt acccgtggca tggcgcgctg gggcgctttg gggcggcaga tcgcgaaaaa
     5461 gtcgaggaag ctatctcgct ggttggctta aaaccgctgg cgcatcggct ggttgatagt
     5521 ctctctggcg gcgaacgtca gcgggcgtgg atcgccatgc tggtggcgca ggatagccgt
     5581 tgtctgttgc tcgacgaacc gacctcggcg ctggatatcg cccaccaggt tgatgtgctg
     5641 gcgctggtgc accgtttaag tcaggagcgt ggcctgacgg tcattgccgt gttgcacgat
     5701 atcaatatgg cggcacgcta ctgtgattat ctggtcgccc tgcgcggtgg tgaaatgatt
     5761 gctcagggaa cgcctgcgga aattatgcgc ggcgataccc tcgaaatgat ttatggcatc
     5821 ccgatgggta ttttgccgca tccggcgggt gctgcacctg tgagttttgt ttattgatga
     5881 gcggcttacc tcttatttcg cgccgtcgac tgttaacggc gatggcgctt tctccgttgt
     5941 tatggcagat gaataccgcc cacgcggcgg ctattgatcc caatcgtatt gtggcgctgg
     6001 agtggttgcc ggtggaatta ctgctggcgc tcggcatcgt gccttacggc gtagcggata
     6061 ccatcaacta tcgcctgtgg gtcagcgaac caccattgcc ggactcagtg atcgacgtcg
     6121 gtttgcgcac agaacctaac cttgaactgc tgaccgaaat gaaaccgtcg tttatggtct
     6181 ggtcggcagg atatggccct tcagcagaaa tgctggcacg tattgcgccg gggcgtggat
     6241 ttaacttcag cgacggcaaa cagccgctgg cgatggcgcg taaatcactg acggaaatgg
     6301 cagatttact taacctgcaa agcgcagcag aaacgcattt agcgcaatat gaagacttta
     6361 tccgcagcat gaaaccccgc tttgtgaagc gtggtgcacg cccgttattg ctgacgacgc
     6421 ttatcgatcc gcgccatatg ttggtcttcg gtccaaacag cttgttccag gaaattcttg
     6481 atgagtacgg catcccaaat gcctggcaag gggaaaccaa cttctggggc agtaccgccg
     6541 tcagtatcga tcgtctggca gcgtataaag acgttgatgt gctctgtttt gatcacgaca
     6601 acagcaaaga catggatgcg ctaatggcaa ccccgctgtg gcaggccatg ccgtttgtcc
     6661 gcgccggacg ctttcagcgc gtacccgcag tctggtttta tggtgcgacg ctctcggcaa
     6721 tgcactttgt gcgcgttctg gataacgcca tcggaggtaa agcgtgagta aacgaattgc
     6781 gcttttcccg gcgttattgc tggcgctgct ggtgattgtc gctacggcgc tgacctggat
     6841 gaacttttcg caggcgctgc cgcgtagcca gtgggcgcag gccgcctggt cgccggatat
     6901 tgacgtcatc gagcagatga tttttcacta cagcttgctg ccgcgtctgg cgatttcgct
     6961 gctggtgggc gcaggcctgg ggctggtggg cgtgctgttt cagcaagtgc tgcgtaatcc
     7021 gctggcggaa ccgacgacac ttggcgttgc tacaggcgcg caactgggga ttaccgtcac
     7081 tacgctctgg gcgatcccag gggcgatggc gagtcagttt gctgcgctgg cgggcgcttg
     7141 cgttgttggc ttaatcgtct ttggcgtcgc gtgggggaaa cggctttcgc cggtaacgct
     7201 gatcctcgcg gggctggtag tgagccttta ttgtggggca atcaatcagt tactggttat
     7261 cttccaccat gaccaactgc aaagcatgtt cctgtggagc accggaacgc tgacgcaaac
     7321 cgactggggc ggtgttgagc gtttatggcc gcagttgctg ggcggtgtga tgctgacgtt
     7381 gctgctactt cgcccgttaa ccctgatggg gcttgatgat ggcgtggcgc gcaatctcgg
     7441 gctggccttg tcgctcgcgc gtctggcggc gctgtcgctg gcgattgtca tcagtgcgct
     7501 gctggtgaac gcggtgggga ttatcggctt tatcgggttg tttgcgccgt tgctggcaaa
     7561 aatgctgggg gcgcggcgtc tgctgccgcg actgatgctg gcgtcgttga ttggtgcgct
     7621 gatcctctgg ctttccgatc aaatcatcct ctggctgact cgcgtgtgga tggaagtgtc
     7681 caccggttcg gtcactgcgt tgatcggtgc gccgctgcta ctgtggctgt tgccgcgttt
     7741 acgcagcatt agcgcgccgg atatgaaggt caacgatcgt gtcgcggctg aacgccaaca
     7801 tgtgctggcg tttgccctcg cgggcggcgt gctgctgttg atggctgtgg tggtggcgct
     7861 gtcgtttggt cgtgatgcgc acggctggat gtgggcgagc ggggcgttgc tcgatgattt
     7921 aatgccctgg cgctggccgc gaattatggc ggcgctattt gcgggcgtca tgctggcggt
     7981 ggcgggctgt attattcagc gactgaccgg caacccgatg gcaagcccgg aagtgctggg
     8041 gattagctcc ggcgcagcgt ttggcgtggt actgatgctg tttctggtac cgggtaatgc
     8101 ttttggctgg ctgttacccg cgggaagtat cggtgccgcg gtgacgctgt tgattattat
     8161 gatcgccgcc gggcgcggtg gattttcccc acaccgcatg ttactggcgg ggatggcgtt
     8221 aagtaccgca ttcaccatgc ttttaatgat gttgcaggcg agtggtgacc cgcgaatggc
     8281 gcaagtgctc acctggatct ctggttcgac ctacaacgcc accgatgcgc aggtctggcg
     8341 taccggaatt gtgatggtga ttttgctggc gattaccccg ctgtaccgcc gctggctgac
     8401 cattttacct ctgggcggtg ataccgcacg agctgtggga atggcgctga cgccgacgcg
     8461 aattgcgctg ctgctgttag cggcttgcct gacggcgacc tcgacgatga ctattggacc
     8521 gttgagtttt gttggtttaa tggcaccgca tattgcgcgg atgatgggtt ttcgacggac
     8581 gatgccacac atcgtaattt cggcgctggt gggtggttta ctgctggtat tcgctgactg
     8641 gtgtgggcgg atggtgctgt ttccattcca gatcccggcg gggctgctgt cgacctttat
     8701 cggcgcgcca tattttatct atttgttgag aaagcagagc cgttaattga gtgcctcgcc
     8761 cggtgggcga ggcaaaatta tcacaacttc gcaaataccc gacgtgcagc atcgatggtg
     8821 ttattgatat cttccatgct gtgcgccaca gacataaagc ccgcttcaaa cgctgacggt
     8881 gccaggtaaa caccttcgtc cagcatcata tggaagaaac gcttaaagcg ttccacgtca
     8941 caggccatca catcctgata gcacgtcacg gactcggcgt cggtaaagaa aataccgaac
     9001 atgccgccaa cgtggttaac gaccagcgga gttccggctt cttctgccgc ttccagcaga
     9061 ccttctgcca gacgtgttgt cagctcatcc agcgtttcgt gaacgcccgg ctgcgcgact
     9121 tcattcagac aggcgaaacc cgctgccatc gcaatcgggt taccggaaag cgtacccgcc
     9181 tgatagaccg gacccgtcgg ggccagcgca tccattacat cacgacgacc accgaatgcg
     9241 cctaccggca ttccaccgcc gatgattttg ccgaggcagg ttaaatctgg cactacgccg
     9301 taataatcct gtgcgccagc cagtgccacg cggaagccgg tcatcacttc atcgatgatc
     9361 agcaacgcgc caaattcgtc gcacagcgca cgcagacctg gcaggaactc tggctgcggc
     9421 ggaacacagt tcatattgcc tgccaccggc tcgacgataa tacaggcaat ctcttgcggg
     9481 tattgctcaa acgcggcgcg tacagaagcc agatcgttat aagtacaggt taaggtatgt
     9541 ttggcgaaat ctgccggaac acccggcgag tttggctggc ctaacgtgag tgcgccagaa
     9601 ccggctttca ccagcaggca gtcagcgtga ccgtggtaac aaccttcaaa tttaatgatt
     9661 ttgtcgcgac cggtaaaacc acgggccagg cggatggcgc tcatggtcgc ttcagtgccg
     9721 gagttcacca tgcgcaccat atccatggtc gggaccagtt cggtcaccag ttgcgccatt
     9781 ttcacttcca tttcggtcgg tgcaccaaag cttaaaccac gctcggcggc ttcaatcacg
     9841 gcattgcgga tagccggatg gttatggccc agcaccatcg gcccccagga accgacataa
     9901 tcgatatagg ctttgccatc aacatcgtac agataagcgc cgtccgcttt ttcgataaac
     9961 agtggagtgc cgcccacgcc agtaaaggcg cgaacagggg agttcacacc gccagggagc
    10021 agctcgcgcg ctgcgctgta aagattttca gacttactca tggagggttc ctgattcgta
    10081 gaaaaagtga atggctgcta ttctatgtta ttcataacaa gttaaatact cgtcaaacat
    10141 caggctgctt gtactggtgc aatcctgatt tcttagagta taaaagtttt gtgcatttga
    10201 aacattacgc tttgcaaagg attttcatgg aacgtgcgag taaaatgccg tcatcttatt
    10261 tgtatgacca ataagtgatc attggatgaa aactgatact ccctctttag aaacaccgca
    10321 ggccgcgcgc ctgcgacgca gacaactgat tcgccaactt cttgagcgcg ataaaacccc
    10381 gttagccatt ttgtttatgg cggcagtcgt cggcacgctt gtcgggctgg cagcggttgc
    10441 ttttgacaaa ggtgtcgcct ggttgcagaa ccaacgtatg gaggcgctgg tacatactgc
    10501 tgataattat ccgcttctgt taaccgtcgc ttttctctgt tcggcggtgc tggcgatgtt
    10561 cggctacttt ttggtgcgca aatacgcgcc ggaagcaggt ggttcgggga tcccggaaat
    10621 tgaaggggcg ctggaagatc aacgtcccgt tcgctggtgg cgtgtgttgc cggtgaaatt
    10681 ctttggcggg ctggggacac tcggcggagg catggtgctg gggcgcgaag ggccaaccgt
    10741 gcagatcggc ggcaatatcg gtcgcatggt actcgatatt ttccgcctga aaggtgatga
    10801 agctcgccat acgctgctgg caaccggtgc tgctgcgggg ctggctgcgg cctttaacgc
    10861 gccgctggcg ggtattttgt ttattatcga agagatgcgt ccgcagtttc gctatacgtt
    10921 aatttcgatt aaagcggtat ttattggcgt cattatgtcg accattatgt accggatttt
    10981 taatcatgaa gttgcgttga ttgacgtcgg taaactttct gatgcgccgc ttaatacgct
    11041 gtggctttat ctgatcctcg gtattatttt tggcattttc ggccctattt ttaataaatg
    11101 ggtgctgggg atgcaggatt tgctgcaccg tgtgcacggc ggcaatatta ccaaatgggt
    11161 gctaatgggc ggtgcgattg gcggtctgtg tggattgctg gggtttgtgg caccagcaac
    11221 gtcgggcggc ggttttaacc tgattcctat cgctaccgca gggaatttca gcatgggaat
    11281 gctggtgttt atcttcgtcg cgcgggtcat taccacctta ctgtgcttct cttccggcgc
    11341 gccgggcggt atttttgccc cgatgctggc gctgggtact gtgctgggaa ccgctttcgg
    11401 aatggttgtc gttgagctgt ttccgcaata tcaccttgag gcggggactt ttgctattgc
    11461 cggaatgggg gcgttactgg cggcatctat tcgcgcgccg ttaacgggga tcattttggt
    11521 tctggagatg accgataact accagctcat tttgccaatg attattaccg gtcttggcgc
    11581 aacactatta gcgcaattta ccggcgggaa accgctatat tcggagattc ttgcgcgcac
    11641 gctggcaaaa caggaagctg agcaactggc gcgaagcaag gccgcatcag ccagcgagaa
    11701 tacttgaacg aaataccagg gtattagata atggcgatta ttattgggtt agaatttgcc
    11761 caattgccga tgtcgtttgg agcaaaatat gagtgatgac gtagcactgc cgctggagtt
    11821 taccgacgca gcagccaaca aagttaaaag cctgatcgct gacgaagata acccgaatct
    11881 gaaattacgc gtgtatatca ccggtggcgg ttgcagcggc ttccagtatg gtttcacctt
    11941 tgatgatcag gtgaacgaag gcgatatgac catcgaaaaa cagggcgttg gcctggtggt
    12001 tgatccgatg agcctgcaat atctggtcgg tggttccgtt gactataccg aaggactgga
    12061 aggttctcgt ttcatcgtga ccaacccgaa cgcgaaaagc acctgcggtt gcggttcttc
    12121 ctttagcatc taatctgttg ttcatgtgcc ggataaacta tccggcacat cttctctctt
    12181 caacgcccat tctcatccag cgcaaacgtc ggtagcttaa gatgccaacg aatagccgcc
    12241 agccgaatca atagcgtcac gaccatgccc atcatactgg ctgtttccag tggtacggaa
    12301 aatgtgtaat aagccgtagc gtggacaata ccgccgataa tacaggcagt tgcgtagatt
    12361 tctgtacgta aaatcatggg gatttcgcgg gccagtacat cacgaatgat cccgccgcca
    12421 acgccagtaa tgacgcccat acaaaccgcg attaacggac cggcttccgc attaaaggct
    12481 ttattcacgc caatgccgac aaacaccgcc agaccaacgg cgtccagcac cggcaacatc
    12541 cattttggta agcgtcttgg ctggcgcacc agcacgatgg tcagcatgct ggttaccatt
    12601 gcaacgacca gatcggtggg atctttcacc caaaataccg ggccgtgatc cagcgccatg
    12661 tcgcgaattg tcccgccgcc tacagcggta accacgccca gtaccagaac accaaaaggg
    12721 tccatacgca attttccggc taacaaaacg ccggagatgg caaataccac tgtgccgact
    12781 atatccagcc aatagacgag cattgttcaa tccccactga gcacctaaaa aggtcaggcg
    12841 ctaatctacc tgtgaaagcg cattacagag ctgttgtgca gcgaggataa tacgtgggct
    12901 tgcacgtcaa accagtcact cgtgagagga ataacgggaa ttttgagctg ttcaccccag
    12961 tattgtttga ttttaggaat ttggtccggt ccgcctgtaa tgacaatcgc ctgtggcgag
    13021 cgtgctaaca cctgttcgcg gctaacttgc ggccaaggaa cccggctgtc tttaaagatg
    13081 ttttctccgc cacaaacttc gagtacctgg ttttgaatcg actcttttcc actggtaaat
    13141 ggcggattaa tgccgaattg cagaaaaaca cgttttttag gtttatcagc atattgcgct
    13201 ttcaattgcg cgtactgatc cagcagggat tgcgcggctt gttcggcctt atccggttgc
    13261 ggactccagg gggccagttg acgtaacgca ttggcaattt gttcaatgct tgtcgcatcg
    13321 acccacatca cttttattcc cggcgaagcc agctggtcaa cctgccgctc ggcattacct
    13381 ccacgccagg caatcaccag atcgggtttc agcgcgacaa tgcgttccag attcatcccc
    13441 tgccaggtgg aaacctgctc aatcttttgc gcttgtggag gatagtcgga atagctgctg
    13501 accccaaccg gcgtgatccc ggcggcaaag gcaagttcag tgttggcggg agaaagcgtg
    13561 atgacgcgcg gtgccgcgtt gagccacagt ggcgcgagaa aagacagggc gaccagcgcc
    13621 ctgaacagtg acttagccat gtgccagttt ctgcaccagt gactcaacca tcaggctgga
    13681 ctgtttagcg gcaacagcca ggaactcatc gaagctaaga tgagactgtt gatcggccac
    13741 gtcggagatg gcgcgtacga caacaaacgg gacgttgaaa ttgtggcaga catgggcgat
    13801 tgccgtcgct tccatctcta cagcaatggc ctgtgggaag ttgtggcgga ttttcgccag
    13861 accaacagaa ccgttgatga aagcgtcgcc gctaacaatc aggccacgta cagcgttaag
    13921 attcagttcg gcaatgcagg cctcagcggc agcgatcagt ttatcgtcag ctttaaagcc
    13981 tgccggacag cctggtaact gaccgtattc ataaccaaat gccgtgacat ccgcgtcgtg
    14041 ataacgtgct tcgtccgaga caacgatatc gcccactttc aacgttggtg ccaggccacc
    14101 ggcagaaccg gtgttaataa tcacatctgg cttgccgtgt tccaacagca aagtggcacc
    14161 cagcgccgca gcgactttac cgatgcccga tttcagaagc gcaacctcgg ttccattcag
    14221 ttggccggta tagatttcgc aaccgccgag actgatagtt tgacgatttt cgattttgtc
    14281 acgcagcagc gtaacttctt cttccattgc accaatgatg ccgattttca tagatttact
    14341 cgcgataagc ccgatttgaa ggcatagttt accatgcgct tacggggaag cgtatttctc
    14401 acgcgggaga ggacatggca cagattgatt tccgaaaaaa aataaactgg catcgtcgtt
    14461 accgttcacc gcagggcgtt aaaaccgaac atgagatcct gcggatcttc gagagcgatc
    14521 gcgggcgtat catcaactct ccggcaattc gtcgtctgca acaaaagacc caggtttttc
    14581 cactggagcg caatgccgcc gtgcgcacgc gtcttaccca ctcgatggaa gtccagcagg
    14641 tggggcgcta catcgccaaa gaaattctaa gccgtatgaa agagcttaaa ttactggaag
    14701 catacggcct ggatgaactg accggcccct ttgaaagcat tgttgagatg tcatgcctga
    14761 tgcacgatat cggcaatccg ccgtttggtc attttggcga agcggcgata aatgattggt
    14821 ttcgccagcg tttgcacccg gaagatgccg aaagccagcc tctgactgac gatcgctgca
    14881 gcgtggcggc actacgttta cgggacgggg aagaaccgct taacgagctg cggcgcaaga
    14941 ttcgtcagga cttatgtcat tttgagggga atgcacaagg cattcgtctg gtgcatacat
    15001 tgatgaggat gaatctcacc tgggcacagg ttggcggtat tttaaaatat acccgtccgg
    15061 cgtggtggcg tggcgaaacg cctgagacac atcactattt aatgaaaaag ccgggttatt
    15121 atctttctga agaagcctat attgcccggt tgcgtaaaga acttaatttg gcgctttaca
    15181 gtcgttttcc attaacgtgg attatggaag cagccgacga catctcctat tgtgtggcag
    15241 accttgaaga tgcggtagag aaaagaatat ttaccgttga gcagctttat catcatttgc
    15301 acgaagcgtg gggccagcat gagaaaggtt cgctcttttc gctggtggtt gaaaatgcct
    15361 gggaaaaatc acgctcaaat agtttaagcc gcagtacgga agatcagttt tttatgtatt
    15421 tacgggtaaa caccctaaat aaactggtac cctatgcggc acaacgattt attgataatc
    15481 tgcctgcgat tttcgccgga acgtttaatc atgcattatt ggaagatgcc agcgaatgca
    15541 gcgatcttct taagctatat aaaaatgtcg ctgtaaaaca tgtgtttagc catccagatg
    15601 tcgagcagct tgaattgcag ggctatcggg tcattagcgg attattagag atttatcgtc
    15661 ctttattaag cctgtcgtta tccgacttta ctgaactggt agaaaaagaa cgggtgaaac
    15721 gtttccctat tgaatcgcgc ttattccaca aactctcgac gcgccatcgg ctggcctatg
    15781 tcgaggctgt cagtaaatta ccgtcagatt ctcctgagtt tccgctatgg gaatattatt
    15841 accgttgccg cctgctgcag gattatatca gcggtatgac cgacctctat gcgtgggatg
    15901 aataccgacg tctgatggcc gtagaacaat aaccaggctt ttgtaaagac gaacaataaa
    15961 tttttacctt ttgcagaaac tttagttcgg aacttcgcgc tataaaacga atctgaagaa
    16021 cacagaaatt ttgcgttatc tgttaatcga gactgaaata catgaaaaaa accacattag
    16081 cactgagtgc actggctctg agtttaggtt tggcgttatc tccgctctct gcaacggcgg
    16141 ctgagacttc ttcagcaacg acagcccagc agatgccaag ccttgcaccg atgctcgaaa
    16201 aggtgatgcc ttcagtggtc agcattaacg tagaaggtag cacaaccgtt aatacgccgc
    16261 gtatgccgcg taatttccag cagttcttcg gtgatgattc tccgttctgc caggaaggtt
    16321 ctccgttcca gagctctccg ttctgccagg gtggccaggg cggtaatggt ggcggccagc
    16381 aacagaaatt catggcgctg ggttccggcg tcatcattga tgccgataaa ggctatgtcg
    16441 tcaccaacaa ccacgttgtt gataacgcga cggtgattaa agtccagctg agcgatggcc
    16501 gtaagttcga cgcgaagatg gtcggcaaag atccgcgctc tgatatcgcg ctgatccaaa
    16561 tccagaaccc gaaaaacctg accgcaatta agatggcgga ttctgatgca ctgcgcgtgg
    16621 gtgattacac cgtagcgatt ggtaacccgt ttggtctggg cgagacggta acttccggga
    16681 ttgtctctgc gctggggcgt agcggcctga atgctgaaaa ctacgaaaac ttcatccaga
    16741 ccgatgcagc gatcaaccgt ggtaactccg gtggtgcgct ggttaacctg aacggcgaac
    16801 tgatcggtat caacaccgcg atcctcgcac cggacggcgg caacatcggt atcggttttg
    16861 caatcccgag caacatggtg aaaaacctga cctcgcagat ggtggaatac ggccaggtga
    16921 aacgcggtga gctgggtatt atggggactg agctgaactc cgaactggcg aaagcgatga
    16981 aagttgacgc ccagcgcggt gctttcgtaa gccaggttct gcctaattcc tccgctgcaa
    17041 aagcgggcat taaagcgggt gatgtgatca cctcactgaa cggtaagccg atcagcagct
    17101 ttgccgcact gcgtgctcag gtgggtacta tgccggtggg cagcaaactg accctgggct
    17161 tactgcgcga cggtaagcag gttaacgtga acctggaact gcagcagagc agccagaatc
    17221 aggttgattc cagctccatc ttcaacggca ttgaaggcgc tgagatgagc aacaaaggca
    17281 aagatcaggg cgtggtagtg aacaacgtga aaacgggcac tccggctgcg cagatcggcc
    17341 tgaagaaagg tgatgtgatt attggcgcga accagcaggc agtgaaaaac atcgctgaac
    17401 tgcgtaaagt tctcgacagc aaaccgtctg tgctggcact gaacattcag cgcggcgaca
    17461 gcaccatcta cctgttaatg cagtaatctc actcaacccc ttcctgaaaa cgggaagggg
    17521 ttctccttac aatctgtgaa cttcaccaca actccataca tcttcatcat cctttaggca
    17581 tttgcacaat gccgtacgtt acgtacttcc ttatgctaag ccgtgcataa cggaggactt
    17641 atggctggct ggcatcttga taccaaaatg gcgcaggata tcgtggcacg taccatgcgc
    17701 atcatcgata ccaatatcaa cgtaatggat gcccgtgggc gaattatcgg cagcggcgat
    17761 cgtgagcgta ttggtgaatt gcacgaaggt gcattgctgg tactttcaca gggacgagtc
    17821 gtcgatatcg atgacgcggt ggcacgtcat ctgcacggtg tgcggcaagg gattaatcta
    17881 ccgttacggc tggaaggtga aattgtcggc gtaattggcc tgacaggtga accagagaat
    17941 ctgcgtaaat atggcgaact ggtctgcatg acggctgaaa tgatgctgga acagtcgcgg
    18001 ttgatgcact tgttggcgca ggatagccgt ttgcgggagg aactggtgat gaacctgatt
    18061 caggcagagg agaatactcc cgcacttact gaatgggcgc aacggctggg gatcgatctc
    18121 aatcaaccgc gagtggtggc tattgttgag gtcgacagcg gtcagcttgg tgtggacagc
    18181 gcaatggcgg agttacaaca actgcaaaac gcgctgacta cgcccgagcg taataatctg
    18241 gtggcgattg tctcgctaac cgaaatggtg gtgttgaaac cggcgttgaa ctcttttggg
    18301 cgctgggatg cagaagatca tcgtaagcga gttgaacaac tgattacccg catgaaagag
    18361 tacggccggc tgcgttttcg cgtttcactg ggcaactatt ttaccggtcc tggcagtatt
    18421 gcccgatcct atcgtacggc gaaaacgacg atggtggtgg gtaaacagcg gatgccagaa
    18481 agtcgctgct atttttatca ggatctgatg ttacctgtgt tactcgacag tttgcgtggc
    18541 gactggcagg ccaacgaact ggcgcgaccg ctggcgcggc tgaaagcgat ggacaataac
    18601 ggcttgctgc gacgaacgct ggcggcgtgg tttcgtcaca atgtgcaacc gctggcaacg
    18661 tcaaaggcgt tgtttattta tcgtaatacc ctggagtatc ggcttaatcg tatatcggaa
    18721 ctgaccgggc ttgatttggg caattttgat gacaggttgc tgctgtatgt ggcgttacaa
    18781 ctggatgaag agcggtaggt tatgcgttaa ggttgaggcg gcgctgtctc atttccctca
    18841 gcccgaaggg gagaggggaa tgcccgaatt aaccgtcaat tcgggattat ttacgcgtta
    18901 gtttttccag atcggcttca atctcgctga tcttattggt tacgactgac tccaggtgac
    18961 gtaagtcgtc gaggatctta cgcttaagat caacttcgct gcggtcacgc tggcagattt
    19021 gatcaagctc atcaatgata taccgtagat tcgggctgat ttcctggact tctttataac
    19081 cctgacccac accatcagcg acgaccgttt tacgctgacg cggatattta aacttaacgc
    19141 tcttggcgaa aaactcgcct ttgtctttct ggaaatagat tttcagaata tcgttgttgg
    19201 cttcctgccg gaggctgtaa cgatcaattt cttcaggatt ggtaataccc agacttttca
    19261 gattgtcgta catagcgtta cctcaaaatg agtcagtaaa ttgtgcttat tttagcattt
    19321 ggcctagccc gcccggctcg actgtgatcg cagaaagcct ttttcttcca gacttctatc
    19381 atggcgtaaa aatcaaaaaa ttacctgctt tattgtggtg ataaaattca cgttctacac
    19441 cagttccagc atcgttactt ccgggcggca gttcagacgc aaaccataca aactgcccac
    19501 gccacgggtt gtgtagatgt gtcgttcgcc aaaggcattt aatccggcga cgtaacgttt
    19561 atcttcgaca ggggcaaaag gttcaccaac caacggtacg cgcagttgcc cgccgtgagt
    19621 atggccgcac agcatcagat cccagggttc atcacgcatg acttctttgc tgtcgggatt
    19681 atgtgccagc atcagtcttg gcagatttgc ttcgctggcg ggaggtggtt tgcattgtcc
    19741 ggcccataag tcaccggtgc ctaccagttc gaattgcctg ttcggcgtgg cgatcaccgt
    19801 agcctggtta aacaacaccg tgatgcccac tgatttcaac gtctcgccaa ttaagtgatt
    19861 tttttctgta ccaacagggc gatcgtggtt gccgaagcag gcaaacgtcg gcgcacattc
    19921 ggcaaggggg gagaggacat cactaaacgc cgaaaaattc agcggcatat caaataatac
    19981 gtaatcgccg cccagtaata tcaaatcggg cttttgttct atgccaagag caatcgcgtc
    20041 agaaatcagg cttaaaggaa caaaacgaga gtaatggaga tcggccagaa aaagaatttt
    20101 gaatggtgct gcgttgtctt taaaaaaggc gaggcggtga cggattaatt caaaccagcc
    20161 tggctcccag taatgcatat aaccgaaacc tgagctcgtg gctatcgtcg cggcagtagc
    20221 ctgcaacaat cggcggcgtg aaatcatcgc tcatccctgc aaaaaaaatc gggcagcgtc
    20281 gtgctgcccg tgtgcatact tttagtcgat ggtacgcagc agttcgttaa tgccgacttt
    20341 gccgcgagtt ttcgcgtcaa ctttcttaac gataaccgca cagtagaggc tgtatttgcc
    20401 atcttttgac ggcagattac ctgaaacaac cacagacccc gccggaacgt gaccgtagtg
    20461 gatttcgccg gtttcacggt cgtaaatacg ggtgctctga ccaatgtata cgcccatgga
    20521 aatgacggaa ccttcttcga caatcacccc ttcaactact tcagagcgtg cgccaatgaa
    20581 gcagttatct tcaatgatgg ttgggttagc ctgcagcggt tccagcacgc cgccgatgcc
    20641 cacgccaccg gaaaggtgga cgtttttacc aatctgcgca caagaaccga cggtcgccca
    20701 ggtatcaacc atggtgcctt catcaacata tgcgccgatg ttgacgtaag acggcatcag
    20761 cacggtgtta cgggcaataa acgcaccctg acgtaccgcc gctggtggca caacgcggaa
    20821 gccttctttc tggaaacgtg cttcgtcgta gtcggcgaat ttcattggca ctttgtcgaa
    20881 gtagcggctt tctgcccctt cgatcacctg attatcatta atacggaaag agagcagcac
    20941 cgcttttttc aaccactgat gcgtcaccca ctgaccgtca attttttccg ctacacgcag
    21001 tgcaccggaa tccagcaggg cgatcacctg atttaccgct tcgcgggtaa cggtgtctgc
    21061 gttggttggc gtgatctcgg cacggcgttc aaaagcggtt tcaataatgt tctgtaactg
    21121 ctgcattgtt aaactctttt catatcagta aacacatcac cctttatcgt ttggattgag
    21181 ggcctctgtc aaccgctgat gcacttcctg ctgcaactcg ttattaagcg cacgccggtc
    21241 agcggtggca attatgaata aatcttctac tcgctcgcca atggttgtaa ttcgggcacc
    21301 atgaagcgaa attcccagat cggcaaaaat tttcccgact ctcgccagca gtcctggctg
    21361 gtcgagcgcg ataagctcaa ggaacgattt gcggtcggta tgggtcggca aaaacgttac
    21421 ttcggtttca acagtaaaat ggcgtaattt ggcgggttgg cgacggggct gcggtggctg
    21481 ccagctactt tgcgtcagta cttgctccag accaaaccga ataacctcat gacgatctgc
    21541 ggacagcggg ctgccatcgg gttccagcac gataaaggta tccatcgcca taccgtcgcg
    21601 agtggtgaaa atttgtgcgt cgtgaacact taaattgcgg cggtctaatt cggcacagac
    21661 ggcggcaaac agataggggc ggtccgggct ccagataaaa atctcggtgc ctccacgcgt
    21721 agcctgcggg ctaagcaata ccagtggttt gcttaaatca tgctgtaata aatggcgggc
    21781 atgccaggcc agttgatttg ggctatggcg gacaaaatag ttagcacgac agcgtgacca
    21841 aatttggtgc agcgcctctt cgtcgatgtt atccatgcgc agtagtgcca gtgcctggag
    21901 ttggtgatgg cgaacccgtt cgcgcatatc cggcgtgttt tgcattccgc gtcgtagctg
    21961 cttttcggtg gcaaaataga gttcgcgcaa cagactttgc ttccagctat tccacagcgt
    22021 ttcgttggtg gcgcaaatgt cagccactgt caggcatacc agatagcgca gacgattttc
    22081 cgtttgaact tcttcggcaa actgcttgat gacttcaggg tcctgaatat cgcggcgttg
    22141 tgctgtcacc gacatcagca agtgctggcg aaccagccag gcaaccagct gtgtttcgcg
    22201 tgagttcagc ccgtggagtt ctgcaaaatg cactacatcc tgagcaccga gaatggagtg
    22261 gtcgccgccg cgtcctttgg cgatatcgtg aaacagcgcg gcgatgaaaa tcagctcagt
    22321 tgacggcagg cgcggccaga cgtccacaca caacggatgg cgctggcgcg tttcttcact
    22381 ggcaaaactc tccagtttca gcatcacgcg gatagtatgt tcatccaccg tgtaggcgtg
    22441 gaacagatca aactgcatct gcccgacgat atgcgaccat tgcggcatat acgcgccgag
    22501 cacgctatgg cgatgcattg gcaatagccc gcgccgcacc gctccggggt gacgcagaat
    22561 gctcaaaaac agttttcgtg cttccggaat attacacagc ggttgttgca gatggcgacg
    22621 ggcatggcgt aactggcgca gcgtggtgga gtaaatgccg gtgatcgcac tgttgcgcac
    22681 catggtgtag aacatacgca agatggcttc cggctggcgc ataaatagtg tttcatcacg
    22741 caggtcgatt agcgtaccgc gtagctgaaa ctcatcgtcg attggacgtg gtttttcgtc
    22801 ggcaggaagg gcgaggatgg cttcatcgaa cagttgcagc agcatctggt tgagttcact
    22861 gacgcggcgt gtaacgcgga agtaatcctt catcatccgc tcgaccggtt cgttgccttc
    22921 accactgtaa ttcagacgct gagcgacgct aagttggcga tcgaataaca ggcgattatc
    22981 gtaacggctg acgaccagat gcagggcaaa gcgaatacgc cacagtatat gcagacattc
    23041 gtttaattcc gcccgctccg ctgaggttaa gaagccaaac ccaaccattt catccagcga
    23101 tgttgcgcca aaatgacggc gggccaccca ttgcagagtg tggatatcgc gcaagccgcc
    23161 agggctactt ttgatgtctg gttcaagatt gtagctggtg ccgtggtaac gctgatggcg
    23221 ctggttctgt tcttcaactt tcgccgcgta gaacttgtcg gaaggccaga atccttcgct
    23281 aaaaatatgt ttttgcagtt cgaggaagag cgcaacatcg ccaattaata agcgggattc
    23341 gattaaattg gtggcgacgg ttaaatccga taacccttcc agcatgcact cttcaagcgt
    23401 gcgcacacta tgaccgactt ccagctttac atcccagagc agcgttaaca gctcgcccac
    23461 tttttgcgcc tgatcgtccg ggagcttttt acggcttaaa atcagtaaat cgatgtcaga
    23521 aagtggatgc agctcgccac gaccgtagcc accgacggcg accaatgcca ggtcggcaat
    23581 ctggctgaat cccgcttcaa tccataatcg ttgcaggagc tggtcgataa actcggtgcg
    23641 cgcctcaatc aactgttctg cagagatccc attgtcaaag gcatcaccca gccaacgctg
    23701 gaaagtatcg atatgggctt ttatcccacc gacggttaat tcatcacggg gccagacgca
    23761 tggattttgc ggttgaccgg gcagggtggg gagagcggtg tttgcgtact gttctggaag
    23821 ggtattcatt gtgcgccact cataagatta aattatcgca ttaaaaaagc cggcattcgc
    23881 cggcttcatc ttattcgtcg tgcgagatta tcgccgggat ggtgtcatcc ttgcgtagcg
    23941 tcagaatttc gcagccgtta tcagtcacca caatagtatg ctcatattgt gcagacaagc
    24001 tgcgatcttt ggtttttacc gtccagccat ctttcatggt gcggatctct tttttacccg
    24061 cgttgaccat tggctcgatg gtgaacgtca tcccaggttt cagtacgacg ttggtttcac
    24121 gggagtcata gtgcagcacc tgcggttctt catggaagcc gcgaccaata ccgtgtccgc
    24181 aatattcacg aacgacggag aagccttctg cttcgacaaa cttctgaatc gccgcaccga
    24241 tttcgcgcag gttaatgcct ggtttgacca tgcgcagcgc caggtacagg ctttcttgcg
    24301 tgatgcggca cagacgttcg cccatgatgg tcggcttacc gacgataaac attttcgagg
    24361 tatcgccgtg gaaaccatct ttgattacgg tgacatcaat gttaacgata tcgccatctt
    24421 tcagcagctt cgcatcgtcc gggataccgt ggcacaccac ttcattaata gagatgcaaa
    24481 cggatttcgg atagccgtga tagccgaggc aggcagaaac cgcgtgttgt tcattaacaa
    24541 tgtaatcatt acagatgcga tccagctcgc cggtgctgac gcccggttta acatacggtt
    24601 cgatcatctc cagcacttcg gcagccagtc ggccagcgac gcgcattttt tcgatatctt
    24661 ctggggtctt gattgagata gccattaatt ctgtccatca gcgtcggtga taccgacaat
    24721 atatatgtaa gtgccgtcaa tggtatcaca cccgggcaaa ttgagaatca ttctgaattt
    24781 cgccaaacgt gccactgaac gttttctata atagaaaatt caacgtctga tgctgtacac
    24841 agcgccaaca attattggtg tccatgacgt atttgtggta taaagcgcgc cggacttccg
    24901 atccatttcg tatacacaga ctggacggaa gcgacaatct cactttgtgt aacaacacac
    24961 acgtatcggc acatattccg gggtgccctt tggggtcggt aatatgggat acgtggaggc
    25021 ataaccccaa cttttatata gaggttttaa tcatggcaac tgtttccatg cgcgacatgc
    25081 tcaaggctgg tgttcacttc ggtcaccaga cccgttactg gaacccgaaa atgaagccgt
    25141 tcatcttcgg tgcgcgtaac aaagttcaca tcatcaacct tgagaaaact gtaccgatgt
    25201 tcaacgaagc tctggctgaa ctgaacaaga ttgcttctcg caaaggtaaa atccttttcg
    25261 ttggtactaa acgcgctgca agcgaagcgg tgaaagacgc tgctctgagc tgcgaccagt
    25321 tcttcgtgaa ccatcgctgg ctgggcggta tgctgactaa ctggaaaacc gttcgtcagt
    25381 ccatcaaacg tctgaaagac ctggaaactc agtctcagga cggtactttc gaaaagctga
    25441 ccaagaaaga agcgctgatg cgcactcgtg agctggagaa actggaaaac agcctgggcg
    25501 gtatcaaaga catgggcggt ctgccggacg ctctgtttgt aatcgatgct gaccacgaac
    25561 acattgctat caaagaagca aacaacctgg gtattccggt atttgctatc gttgatacca
    25621 actctgatcc ggacggtgtt gacttcgtta tcccgggtaa cgacgacgca atccgtgctg
    25681 tgaccctgta cctgggcgct gtagctgcaa ccgtacgtga aggccgttct caggatctgg
    25741 cttcccaggc ggaagaaagc ttcgtagaag ctgagtaata aggcttgata actcccccaa
    25801 aatagttcga gttgcagaaa ggcggcaagc tcgagaattc ccgggagctt acatcagtaa
    25861 gtgaccggga tgagcgagcg aagataacgc atctgcggcg cgaaatatga agggggagag
    25921 cccttataga ccaggtagta cacgtttggt tagggggcct gcatatggcc ccctttttca
    25981 cttttatatc tgtgcggttt aatgccgggc agatcacatc tccgaggatt ttagaatggc
    26041 tgaaattacc gcatccctgg taaaagagct gcgtgagcgt actggcgcag gcatgatgga
    26101 ttgcaaaaaa gcactgactg aagctaacgg cgacatcgag ctggcaatcg aaaacatgcg
    26161 taagtccggt gctattaaag cagcgaaaaa agcaggcaac gttgctgctg acggcgtgat
    26221 caaaaccaaa atcgacggca actacggcat cattctggaa gttaactgcc agactgactt
    26281 cgttgcaaaa gacgctggtt tccaggcgtt cgcagacaaa gttctggacg cagctgttgc
    26341 tggcaaaatc actgacgttg aagttctgaa agcacagttc gaagaagaac gtgttgcgct
    26401 ggtagcgaaa attggtgaaa acatcaacat tcgccgcgtt gctgcgctgg aaggcgacgt
    26461 tctgggttct tatcagcacg gtgcgcgtat cggcgttctg gttgctgcta aaggcgctga
    26521 cgaagagctg gttaaacaca tcgctatgca cgttgctgca agcaagccag aattcatcaa
    26581 accagaagac gtatccgctg aagtggtaga aaaagaatac caggtacagc tggatatagc
    26641 gatgcagtct ggtaagccga aagaaatcgc agagaaaatg gttgaaggcc gcatgaagaa
    26701 attcaccggc gaagtttctc tgaccggtca gccgttcgtt atggaaccaa gcaaaactgt
    26761 tggtcagctg ctgaaagagc ataacgctga agtgactggc ttcatccgct tcgaagtggg
    26821 tgaaggcatc gagaaagttg agactgactt tgcagcagaa gttgctgcga tgtccaagca
    26881 gtcttaatta tcaaaaagga gccgcctgag ggcggcttct ttttgtgccc atcttgtaaa
    26941 ttcagctaac ccttgtgggg ctgcgctgaa aagcgacgta caatgtcgct agtattaatt
    27001 catttcaatc gttgacagtc tcaggaaaga aacatggcta ccaatgcaaa acccgtctat
    27061 aaacgcattc tgcttaagtt gagtggcgaa gctctgcagg gcactgaagg cttcggtatt
    27121 gatgcaagca tactggatcg tatggctcag gaaatcaaag aactggttga actgggtatt
    27181 caggttggtg tggtgattgg tgggggtaac ctgttccgtg gcgctggtct ggcgaaagcg
    27241 ggtatgaacc gcgttgtggg cgaccacatg gggatgctgg cgaccgtaat gaacggcctg
    27301 gcaatgcgtg atgcactgca ccgcgcctat gtgaacgctc gtctgatgtc cgctattcca
    27361 ttgaatggcg tgtgcgacag ctacagctgg gcagaagcta tcagcctgtt gcgcaacaac
    27421 cgtgtggtga tcctctccgc cggtacaggt aacccgttct ttaccaccga ctcagcagct
    27481 tgcctgcgtg gtatcgaaat tgaagccgat gtggtgctga aagcaaccaa agttgacggc
    27541 gtgtttaccg ctgatccggc gaaagatcca accgcaacca tgtacgagca actgacttac
    27601 agcgaagtgc tggaaaaaga gctgaaagtc atggacctgg cggccttcac gctggctcgt
    27661 gaccataaat taccgattcg tgttttcaat atgaacaaac cgggtgcgct gcgccgtgtg
    27721 gtaatgggtg aaaaagaagg gactttaatc acggaataat tcccgtgatg gataaataag
    27781 ggtaagattc cgcgtaagta tcgcgggggc gtaagtctgg ttataaggcg ttattgttgc
    27841 aggcagtttg gtcacggcca gcgcgcagca accggagcgt acaaaagtac gtgaggatgg
    27901 cgagcactgc tcggggccaa aatggcaaat aaaatagcct aataatccag acgattaccc
    27961 gtaatatgtt taatcagggc tatacttagc acacttccac tgtgtgtgac tgtctggtct
    28021 gactgagaca agttttcaag gattcgtaac gtgattagcg atatcagaaa agatgctgaa
    28081 gtacgcatgg acaaatgcgt agaagcgttc aaaacccaaa tcagcaaaat acgcacgggt
    28141 cgtgcttctc ccagcctgct ggatggcatt gtcgtagaat attacggcac gccgacgccg
    28201 ctgcgtcagc tggcaagcgt aacggtagaa gattcccgta ctctgaaaat caacgtgttt
    28261 gatcgttcaa tgtctccggc cgttgaaaaa gcgattatgg cgtccgatct tggcctgaac
    28321 ccgaactctg cgggtagcga catccgtgtt ccgctgccgc cgctgacgga agaacgtcgt
    28381 aaagatctga ccaaaatcgt tcgtggtgaa gcagaacaag cgcgtgttgc agtacgtaac
    28441 gtgcgtcgtg acgcgaacga caaagtgaaa gcactgttga aagataaaga gatcagcgaa
    28501 gacgacgatc gccgttctca ggacgatgta cagaaactga ctgatgctgc aatcaagaaa
    28561 attgaagcgg cgctggcaga caaagaagca gaactgatgc agttctgatt tcttgaacga
    28621 caaaaacgcc gctcagtaga tccttgcgga tcggctggcg gcgttttgct ttttattctg
    28681 tctcaactct ggatgtttca tgaagcaact caccattctg ggctcgaccg gctcgattgg
    28741 ttgcagcacg ctggacgtgg tgcgccataa tcccgaacac ttccgcgtag ttgcgctggt
    28801 ggcaggcaaa aatgtcactc gcatggtaga acagtgcctg gaattctctc cccgctatgc
    28861 cgtaatggac gatgaagcga gtgcgaaact tcttaaaacg atgctacagc aacagggtag
    28921 ccgcaccgaa gtcttaagtg ggcaacaagc cgcttgcgat atggcagcgc ttgaggatgt
    28981 tgatcaggtg atggcagcca ttgttggcgc tgctgggctg ttacctacgc ttgctgcgat
    29041 ccgcgcgggt aaaaccattt tgctggccaa taaagaatca ctggttacct gcggacgtct
    29101 gtttatggac gccgtaaagc agagcaaagc gcaattgtta ccggtcgata gcgaacataa
    29161 cgccattttt cagagtttac cgcaacctat ccagcataat ctgggatacg ctgaccttga
    29221 gcaaaatggc gtggtgtcca ttttacttac cgggtctggt ggccctttcc gtgagacgcc
    29281 attgcgcgat ttggcaacaa tgacgccgga tcaagcctgc cgtcatccga actggtcgat
    29341 ggggcgtaaa atttctgtcg attcggctac catgatgaac aaaggtctgg aatacattga
    29401 agcgcgttgg ctatttaacg ccagcgccag ccagatggaa gtgctgattc acccgcagtc
    29461 agtgattcac tcaatggtgc gctatcagga cggcagtgtt ctggcgcagc tgggggaacc
    29521 ggatatgcgt acgccaattg cccacaccat ggcatggccg aatcgcgtga actctggcgt
    29581 gaagccgctc gatttttgca aactaagtgc gttgacattt gccgcaccgg attatgatcg
    29641 ttatccatgc ctgaaactgg cgatggaggc gttcgaacaa ggtcaggcag cgacgacagc
    29701 attgaatgcc gcaaacgaaa tcaccgttgc tgcttttctt gcgcaacaaa tccgctttac
    29761 ggatatcgct gcgttgaatt tatcggtact ggaaaaaatg gatatgcgcg aaccacaatg
    29821 tgtggacgat gtgttatctg ttgatgcgaa cgcgcgtgaa gtcgccagaa aagaggtgat
    29881 gcgtctcgca agctgaggat aatccggcta cagagagtct cgctatttgt tagcgtaggg
    29941 cttcagtgat atagtctgcg ccatctgatc gtaagtagtt ggctttataa ggtcaggtat
    30001 gccgtggttt tgcatggctt tttttgtata ggcttcagta ttcctgagta ccgtaaaccc
    30061 tgtcagggaa taaaaaacgc gtgatgttgt ctgctactca accacttagc gaaaaattgc
    30121 cagcgcatgg ctgccgtcat gttgcgatca ttatggacgg caatggtcgc tgggcaaaaa
    30181 agcaagggaa gattcgtgcc tttgggcata aagccggggc aaaatccgtc cgccgggctg
    30241 tctcttttgc ggccaacaac ggtattgagg cgttaacgct gtatgccttt agtagtgaaa
    30301 actggaaccg accagcgcag gaagtcagtg cgttaatgga actgtttgtg tgggcgctcg
    30361 atagcgaagt aaaaagtctg caccgacata acgtgcgtct gcgtattatt ggcgatacca
    30421 gtcgctttaa ctcgcgtttg caagaatgta ttcgtaaatc tgaagcgcta acagccggga
    30481 ataccggtct gacgctgaat attgcggcga actacggtgg acgttgggat atagtccagg
    30541 gagtcaggca actggctgaa aaggtgcagc aaggaaacct gcaaccagat cagatagatg
    30601 aagagatgct aaaccagcat gtctgtatgc atgaactggc ccctgtagat ttagtaatta
    30661 ggactggggg ggagcatcgc attagtaact ttttgctttg gcaaattgcc tatgccgaac
    30721 tttactttat agatgttctc tggcccgatt tcgatgaaca agactttgaa ggggcgttaa
    30781 atgcctttgc taatcgagag cgtcgtttcg gcggcaccga gcccggtgat gaaacagcct
    30841 gatggggggc gcttttgctg aagtatcgcc tgatatctgc ttttgtgtta atacccgtcg
    30901 tcatcgcggc gttgtttctg ttgccgccgg tggggttcgc cattgtaacg ctggtggtct
    30961 gcatgctggc agcgtgggaa tggggacagc ttagcggttt taccactcgt tcgcagcgag
    31021 tatggttggc ggtgttatgc gggttattgt tggcgctgat gctttttctg ttgccggaat
    31081 atcaccgaaa tattcatcaa ccgctggttg aaatctcact ttgggcttcg ctgggttggt
    31141 ggattgtctc gctattgctg gtgctgtttt acccaggttc cgcagcaatc tggcgtaact
    31201 ctaaaacatt gcgccttatt tttggcgtgc taaccattgt tcccttcttc tggggcatgc
    31261 tggcgttacg ggcctggcac tatgacgaga atcattacag tggcgcaata tggctgctct
    31321 atgtcatgat cctggtatgg ggcgctgact ccggcgcata tatgtttggc aaattgtttg
    31381 gtaaacataa gctggcaccg aaggtttctc cgggtaaaac ctggcaaggc tttataggtg
    31441 gactcgctac tgcagcggta atctcatggg gttatggcat gtgggcgaat ctcgacgtcg
    31501 ctcccgtcac cttactcatt tgctctattg tcgcagcgtt agcctcagtg ctcggcgatc
    31561 tgaccgagag tatgtttaag cgtgaagcag gaattaagga cagcggtcat ttaattccag
    31621 gacacggtgg tattttagat cgtattgata gcctgacggc tgcggtaccg gtctttgctt
    31681 gcttgttgtt actggtattc aggacgcttt aacggaaggt aatatgctga gttttctctg
    31741 ggatttggct tcgttcatcg ttgcactggg tgtacttatc actgtgcatg aatttggtca
    31801 tttctgggtt gcccggcgtt gtggtgttcg cgttgagcgt ttctcaatag ggtttggtaa
    31861 ggcgctctgg cggcgaactg ataagctcgg caccgaatat gttatcgccc tgatcccgct
    31921 gggcggttat gtcaaaatgc tggatgagcg cgcagaaccg gtcgttccgg aactccgcca
    31981 ccatgccttc aataataaat ctgttggcca acgagcggcg attattgccg caggtccggt
    32041 tgcaaacttc atttttgcta tctttgccta ctggctggtt tttattattg gtgtgcctgg
    32101 cgtacgtccg gtggttggtg aaatagcagc caattcgata gctgcggaag cacaaattgc
    32161 accaggtacg gaactaaaag ccgtagatgg tatcgaaacg cctgattggg atgccgtgcg
    32221 tttgcagttg gtcgataaaa ttggcgatga aagcaccacc attacagtag cgccatttgg
    32281 cagcgaccaa cggcgggatg taaagctcga tttacgtcac tgggcgtttg agcctgataa
    32341 agaagatccg gtatcttcgc tggggattcg tcctcgtggg ctgcaaattg aacctgtact
    32401 ggaaaatgtg cagccaaact cggcggcaag caaggcaggt ttgcaagcag gcgacaggat
    32461 cgttaaagtc gatggtcagc ccttaacgca gtgggtgacc tttgtgatgc ttgtccggga
    32521 taacccgggg aaatccttag cgttagaaat cgaaaggcag ggaagtctct tgtctttgac
    32581 attaatcccg gagagtaaac cgggtaatgg taaagcgatt ggttttgtcg gtattgagcc
    32641 gaaagtcatt cctttgccag atgagtataa agttgtacgc cagtatgggc cgttcaacgc
    32701 catcgtcgaa gccacggaca aaacgtggca gctgatgaag ctgacggtca gtatgctggg
    32761 aaaattgatc accggtgatg tgaaactgaa caacctcagt gggccgatct ctatcgccaa
    32821 gggggctggg atgacagcgg aactcggggt agtttattac ctgccgtttc ttgcgcttat
    32881 tagcgtgaac ttagggataa ttaacctgtt tccgttgccc gtacttgacg gggcgcatct
    32941 gctgttcctt gcgatcgaaa agatcaaggg cggaccggta tccgagcggg ttcaagactt
    33001 ttgttatcgc attggctcga ttctgctggt gctgttaatg gggcttgcac ttttcaatga
    33061 tttctctcgg ttatgagagt tagttaggaa gaacgcataa taacgatggc gatgaaaaag
    33121 ttgctcatag cgtcgctgct gtttagcagc gccaccgtat acggtgctga agggttcgta
    33181 gtgaaagata ttcatttcga aggccttcag cgtgtcgccg ttggtgcggc cctcctcagt
    33241 atgccggtgc gtacaggcga cacggttaat gatgaagata tcagtaatac cattcgcgct
    33301 ctgtttgcta ccggcaactt tgaggatgtt cgcgtccttc gtgatggtga tacccttctg
    33361 gttcaggtaa aagaacgtcc gaccattgcc agcattactt tctccggtaa caaatcggtg
    33421 aaagatgaca tgctgaagca aaacctcgag gcttctggtg tgcgtgtggg cgaatccctc
    33481 gatcgcacca ccattgccga tatcgagaaa ggtctggaag acttctacta cagcgtcggt
    33541 aaatatagcg ccagcgtaaa agctgtcgtg accccgctgc cgcgcaaccg tgttgaccta
    33601 aaactggtgt tccaggaagg tgtgtcagct gaaatccagc aaattaacat tgttggtaac
    33661 catgctttca ccaccgacga actgatctct catttccaac tgcgtgacga agtgccgtgg
    33721 tggaacgtgg taggcgatcg taaataccag aaacagaaac tggcgggcga ccttgaaacc
    33781 ctgcgcagct actatctgga tcgcggttat gcccgtttca acatcgactc tacccaggtc
    33841 agtctgacgc cagataaaaa aggtatttac gtcacggtga acattaccga aggcgatcag
    33901 tacaagcttt ctggcgttga agtgagcggc aaccttgccg ggcactccgc tgaaattgag
    33961 cagctgacta agatcgagcc gggcgagctg tataacggca ccaaagtgac caagatggaa
    34021 gatgacatca aaaagcttct cggtcgctat ggttatgcct atccgcgcgt acagtcgatg
    34081 cctgaaatta acgatgccga caaaaccgtt aaattacgcg tgaacgttga tgcgggtaac
    34141 cgtttctacg tgcgtaagat ccgttttgaa ggtaacgata cctcgaaaga tgccgtcctg
    34201 cgtcgcgaaa tgcgtcagat ggaaggtgca tggctgggaa gcgatctggt cgatcagggt
    34261 aaggagcgtc tgaatcgtct gggcttcttt gaaactgtcg ataccgatac ccaacgtgtt
    34321 ccgggtagcc cggaccaagt agatgtagtc tacaaggtga aagaacgtaa caccggtagc
    34381 ttcaacttcg ggattggtta cggtactgaa agtggcgtga gcttccaggc tggcgtgcaa
    34441 caggataact ggttaggtac aggttatgct gttggtatca acgggaccaa aaacgattac
    34501 cagacctatg ctgaattgtc ggtaaccaac ccgtacttca ctgtagatgg tgtaagcctc
    34561 ggtggtcgtc tcttctataa tgacttccag gcagatgacg ccgacctgtc cgactatacc
    34621 aacaagagtt atggtacaga cgtgacgttg ggcttcccga tcaacgaata taactcgctg
    34681 cgtgcaggtc tgggttatgt acataactcc ctgtccaaca tgcagcctca ggttgcgatg
    34741 tggcgttatc tgtactctat gggtgaacat ccgagcacct ctgatcagga taacagcttc
    34801 aaaacggacg acttcacgtt caactatggt tggacctata acaagcttga ccgtggttac
    34861 ttcccgacag atggttcacg tgtcaacctg accggtaaag tgaccattcc tggatcggat
    34921 aacgaatact acaaagtgac gttagacacg gcgacttatg tgccgatcga tgacgatcac
    34981 aaatgggttg ttctggggcg tacccgctgg ggttatggtg atggtttagg cggcaaagag
    35041 atgccgttct acgagaactt ctatgccggt ggttccagca ccgtccgtgg cttccagtcc
    35101 aataccattg gtccgaaagc agtttacttc ccgcatcagg ccagtaatta tgatccggac
    35161 tatgattacg aatgtgcgac tcaggacggc gcgaaagacc tgtgtaaatc ggatgatgct
    35221 gtaggcggta acgccatggc ggttgccagc ctcgagttca tcaccccgac gccgtttatt
    35281 agcgataagt atgctaactc ggttcgtact tccttcttct gggatatggg taccgtttgg
    35341 gatacaaact gggattccag ccaatattct ggatatccgg actatagtga tccaagcaat
    35401 atccgtatgt ctgcgggtat cgcattacaa tggatgtccc cattggggcc gttggtgttc
    35461 tcctacgccc agccgttcaa aaagtacgat ggagacaagg cagaacagtt ccagtttaac
    35521 atcggtaaaa cctggtaagt gttctccaca aaggaatgta gtggtagtgt agcgatgact
    35581 ttaggcgatc aatataagat cgccgggcca cgcaaagaac tgcaccctcc ggtgcaaatg
    35641 ggatggtaag gagtttattg tgaaaaagtg gttattagcg gcaggtctcg gtttagcact
    35701 ggcaacttct gctcaggcgg ctgacaaaat tgcaatcgtc aatatgggca gcctgttcca
    35761 gcaggtagcg cagaaaaccg gtgtttctaa cacgctggaa aatgagttca aaggccgtgc
    35821 cagcgaactg cagcgtatgg aaaccgatct gcaggctaaa atgaaaaagc tgcagtccat
    35881 gaaagcgggc agcgatcgca ctaagctgga aaaagacgtg atggctcagc gccagacttt
    35941 tgctcagaaa gcgcaggctt ttgagcagga tcgcgcacgt cgttccaacg aagaacgcgg
    36001 caaactggtt actcgtatcc agactgctgt gaaatccgtt gccaacagcc aggatatcga
    36061 tctggttgtt gatgcaaacg ccgttgctta caacagcagc gatgtaaaag acatcactgc
    36121 cgacgtactg aaacaggtta aataagtaat gccttcaatt cgactggctg atttagcgca
    36181 gcagttggat gcagaactac acggtgatgg cgatatcgtc atcaccggcg ttgcgtccat
    36241 gcaatctgca caaacaggtc acattacgtt catggttaac ccaaaatacc gtgagcattt
    36301 aggcttgtgc caggcgtccg cggttgtcat gacccaggac gatcttcctt tcgcgaaaag
    36361 tgccgcgctg gtagtgaaga atccctacct gacttacgcg cgcatggcgc aaattttaga
    36421 taccacgccg cagcccgcgc agaacattgc acccagtgcg gtgatcgacg cgacggcgaa
    36481 gctggggaac aatgtatcga ttggcgctaa cgcggtgatt gaatccggcg ttgaactggg
    36541 cgataacgtg attatcggtg ccggttgctt cgtaggtaaa aacagcaaaa tcggtgcagg
    36601 ttcgcgtctc tgggcgaacg taaccattta ccatgagatc cagatcggtc agaattgcct
    36661 gatccagtcc ggaacagtgg taggcgcaga cggctttggt tatgccaacg atcgtggtaa
    36721 ctgggttaag atcccacaga ttggtcgcgt aattattggc gatcgcgtgg agatcggtgc
    36781 ctgcactacc atcgatcgcg gcgcactgga tgacactgtt attggcaatg gcgtgatcat
    36841 tgataaccag tgccagattg cacataacgt cgtgattggc gacaatacgg cggttgccgg
    36901 tggcgtcatt atggcgggca gcctgaaaat tggtcgttac tgcatgatcg gcggagccag
    36961 cgtaatcaac gggcatatgg aaatatgcga caaagtgacg gttacgggca tgggtatggt
    37021 gatgcgtccc atcactgaac caggcgtcta ttcctcaggc attccgctgc aacccaacaa
    37081 agtctggcgc aaaaccgctg cactggtgat gaacattgat gacatgagca agcgtctgaa
    37141 atcgcttgag cgcaaggtta atcaacaaga ctaacgttcc atcttttgtt cgccaaactt
    37201 tacggcctgt ctcattctta cgattgcggc aggccgtgtt attattgtcg tttcttatat
    37261 tttgacagga agagtatctt gactactaac actcatactc tgcagattga agagatttta
    37321 gaacttctgc cgcaccgttt cccgttctta ctggtggatc gcgtgctgga ttttgaagaa
    37381 ggtcgttttc tgcgcgcagt aaaaaatgtc tctgtcaatg agccattctt ccagggccat
    37441 ttccctggaa aaccgatttt cccgggtgtg ctgattctgg aagcaatggc acaggcaaca
    37501 ggtattctgg cgtttaaaag cgtaggaaaa ctggaaccgg gtgagctgta ctacttcgct
    37561 ggtattgacg aagcgcgctt caagcgcccg gtcgtgcctg gcgatcaaat gatcatggaa
    37621 gtcactttcg aaaaaacgcg ccgcggcctg acccgtttta aaggggttgc tctggtcgat
    37681 ggtaaagtag tttgcgaagc aacgatgatg tgtgctcgta gccgggaggc ctgatacgtg
    37741 attgataaat ccgcctttgt gcatccaacc gccattgtgg aagagggcgc gtcaattggc
    37801 gcgaacgcac acattggtcc tttttgtatc gttggacccc atgtcggaat tggtgagggt
    37861 accgtactga aatctcacgt tgtcgtgaat ggtcatacta aaattggccg cgataatgag
    37921 atttatcagt tcgcctccat cggcgaagtt aaccaggatc tgaaatatgc tggcgaaccg
    37981 acccgtgtgg aaatcggcga tcgtaaccgc attcgcgaaa gcgtcaccat tcatcgtggc
    38041 acagtccagg gcggtggatt gacgaaggtg ggcagcgaca acttactgat gatcaacgcg
    38101 cacattgcgc acgattgtac ggtaggtaac cgctgtattc tcgccaacaa cgcaacgctg
    38161 gcgggtcacg tatcggttga cgacttcgcg atcatcggcg gcatgaccgc agtccatcag
    38221 ttctgcatca ttggtgcgca cgtgatggtt ggcggctgct ccggtgtggc gcaggacgtc
    38281 cctccttatg tcattgcgca gggtaaccac gcaacgccgt tcggtgtcaa tatcgaaggg
    38341 ctgaagcgcc gcggattcag ccgtgaggcg attaccgcta tccgcaatgc gtataagctg
    38401 atttatcgta gcggtaaaac gctcgatgaa gtgaaaccgg aaattgctga actggcggaa
    38461 acatatccgg aagtgaaagc ctttaccgat ttcttttcac gctcaacgcg cggtctgatt
    38521 cgttaatgac tgaacagcgt ccattaacga ttgccctggt cgccggagaa acctccggcg
    38581 atatcctagg ggccggttta atccgcgctc tgaaagaacg tgtgcccaac gcccgctttg
    38641 ttggtgttgc cgggccacga atgcaggctg aaggctgcga agcctggtac gaaatggaag
    38701 aactggcggt gatgggcatt gttgaagtgc tcggtcgtct gcgtcgctta ctgcatattc
    38761 gtgccgatct gacaaagcgt tttggcgaac tgaagccaga tgtttttgtt ggtattgatg
    38821 cgcctgactt caatattact cttgaaggta acctcaaaaa gcagggtatc aaaaccattc
    38881 attacgtcag tccgtcagtc tgggcgtggc gacagaaacg tgttttcaaa ataggcagag
    38941 ccaccgatct ggtgctcgca tttctgcctt tcgaaaaagc gttttatgac aaatacaacg
    39001 taccgtgccg ctttatcggt cataccatgg ctgatgccat gccattagat ccagataaaa
    39061 atgccgcccg tgatgtgctg gggatccctc acgatgccca ctgcctggcg ttgctaccgg
    39121 ggagccgtgg tgcagaagtt gaaatgctta gtgccgattt cctgaaaacg gcccagcttt
    39181 tgcgccagac atatccggat ctcgaaatcg tggtgccact ggtgaatgcc aaacgccgcg
    39241 agcagtttga acgcatcaaa gctgaagtcg cgccagactt ttcagttcat ttgctggatg
    39301 ggatgggccg tgaggcgatg gtcgccagcg atgcggcgct actggcgtcg ggtacggcag
    39361 ccctggagtg tatgctggcg aaatgcccga tggtggtggg atatcgcatg aagcctttta
    39421 ccttctggtt ggcgaagcgg ctggtgaaaa ctgattatgt ctcgctgcca aatctgctgg
    39481 cgggcagaga gttagtcaaa gagttattgc aggaagagtg tgagccgcaa aaactggctg
    39541 cggcgctgtt accgctgttg gcgaacggga aaatcagcca cgcgatgcac gataccttcc
    39601 gtgaactgca tcagcagatc cgctgcaatg ccgatgagca ggcggcacaa gccgttctgg
    39661 agttagcaca atgatcgaat ttgtttatcc gcacacgcag ctggttgcgg gtgtggatga
    39721 agtcggacgc gggccgttag ttggcgcggt cgtcaccgct gcggtgatcc ttgacccggc
    39781 gcgcccgatt gccgggctga atgattccaa aaagctgagc gaaaaacgcc gtctggcgct
    39841 ctgtgaagag atcaaagaga aagcgttgag ctggagtctg ggccgcgcgg aaccccacga
    39901 aatcgacgag ctgaacattc ttcatgcgac catgctggcg atgcagcgtg ccgtcgctgg
    39961 gctgcatatt gcgccggaat atgtgttgat tgatggtaac cgctgcccga aattaccgat
    40021 gcctgcgatg gttgtggtga aaggcgatag ccgcgtaccg gaaatcagtg ccgcgtctat
    40081 cctggcgaaa gtgacgcgtg acgccgaaat ggcggcgctg gatattgttt tcccgcaata
    40141 tggttttgcc caacacaaag ggtacccaac cgcttttcat ctggaaaaac tggctgaaca
    40201 cggcgcgacc gaacaccatc ggcgcagctt tgggcctgtc aaacgcgcac tgggacttgc
    40261 gtcctgattc ttgtgtcgag attaagtaaa ccggaatctg aagatgtctg aaccacgttt
    40321 cgtacacctg cgggtgcaca gcgactactc gatgatcgat ggcctggcca aaactgcacc
    40381 gttggtaaaa aaggcggcgg cgttgggtat gccagcactg gcgatcaccg atttcaccaa
    40441 cctttgtggt ctggtgaagt tctacggagc gggacatggc gcagggatta agcctatcgt
    40501 cggggcagat tttaacgtcc agtgcgacct gctgggtgat gagttaaccc acctgacggt
    40561 actggcggcg aacaataccg gctatcagaa tctgacgttg ctgatctcaa aagcgtatca
    40621 gcgcgggtac ggtgccgctg ggccgatcat cgatcgcgac tggcttatcg aattaaatga
    40681 agggttgatc cttctttccg gcgggcgcat gggcgacgtc ggacgcagtc ttttgcgtgg
    40741 taacagcgcg ctggtagatg agtgtgtcgc gttttatgaa gaacacttcc cggatcgcta
    40801 ttttctcgag ctgatccgca ccggcaggcc ggatgaagaa agctatctgc acgcggcggt
    40861 ggaactggcg gaagcgcgcg gtttgcccgt cgtggcgact aacgatgtgc gctttatcga
    40921 cagcagcgac tttgacgcac acgaaatccg cgtcgcgatc cacgacggct ttaccctcga
    40981 cgatcctaaa cgcccgcgta actattcgcc gcagcaatat atgcgtagcg aagaggagat
    41041 gtgtgagctg tttgccgaca tccccgaagc ccttgccaac accgttgaga tcgccaaacg
    41101 ctgtaacgta actgtgcgtc ttggtgaata cttcctgccg cagttcccga ccggggacat
    41161 gagcaccgaa gattatctgg tcaagcgtgc aaaagagggc ctggaagagc gtctggcctt
    41221 tttattccct gacgaggaag aacgtgttaa gcgccgcccg gaatatgacg aacgtctgga
    41281 gactgaactt caggttatca accagatggg cttcccgggc tacttcctca tcgttatgga
    41341 atttatccag tggtcgaaag ataacggcgt accggtaggg ccaggccgtg gctccggtgc
    41401 gggttcactg gtggcctacg cgctgaaaat caccgacctc gatccgctgg aatttgacct
    41461 gctgttcgaa cgtttcctta acccggaacg tgtctccatg cctgacttcg acgttgactt
    41521 ctgtatggag aaacgcgatc aggttatcga gcacgtagcg gacatgtacg gtcgtgatgc
    41581 ggtatcgcag atcatcacct tcggtacaat ggcggcgaaa gcggtgatcc gcgacgtagg
    41641 ccgcgtgctg gggcatccgt acggctttgt cgatcgtatc tcgaaactga tcccgcccga
    41701 tccggggatg acgctggcga aagcgtttga agccgagccg cagctgccgg aaatctacga
    41761 agcggatgaa gaagttaagg cgctgatcga catggcgcgc aaactggaag gggtcacccg
    41821 taacgccggt aagcacgccg gtggggtggt tatcgcgccg accaaaatta ccgattttgc
    41881 gccgctttac tgcgatgaag agggcaaaca tccggtcacc cagtttgata aaagcgacgt
    41941 tgaatacgcc ggactggtga agttcgactt ccttggtttg cgtacgctca ccatcatcaa
    42001 ctgggcgctg gagatgatca acaagcggcg ggcgaagaat ggcgagccgc cgctggatat
    42061 cgccgcgatc ccgctggatg acaagaaaag cttcgacatg ctgcaacgct cggaaaccac
    42121 ggcggtattc cagcttgaat cgcgcggcat gaaggatctg atcaagcgtc tgcaacctga
    42181 ctgcttcgaa gatatgatcg cactggtggc gctgttccgc ccaggtccgt tgcaatcagg
    42241 gatggtggat aactttatcg accgtaaaca tggtcgcgaa gaaatctcct atccggacgt
    42301 acagtggcag catgaaagcc tgaaaccggt actggagcca acctacggca tcatcctgta
    42361 tcaggaacag gtcatgcaga ttgcgcaggt gctttctggt tataccctcg gtggcgcgga
    42421 tatgctgcgt cgtgcgatgg gtaagaaaaa gccggaagag atggctaagc agcgttctgt
    42481 atttgctgaa ggtgcagaaa agaacggagt caacgccgaa ctggcgatga aaatcttcga
    42541 cctggtggag aaattcgcgg gttacggatt taacaaatcg cactctgcgg cctatgcttt
    42601 ggtgtcatat caaacgttat ggctgaaagc gcactatccg gcggagttta tggcggcggt
    42661 aatgaccgcc gatatggaca acaccgagaa ggtggtgggc ctggtggatg agtgctggcg
    42721 gatggggctg aaaatcctgc caccagatat aaactccggt ctttaccatt tccacgtcaa
    42781 cgacgacggc gaaatcgtgt atggtattgg cgccatcaaa ggggtaggtg aaggtccgat
    42841 tgaggccatc atcgaagccc gtaataaagg cggctacttc cgcgaactgt ttgatctctg
    42901 cgcccgtacc gacaccaaaa agttaaaccg gcgggtgctg gaaaaactga tcatgtccgg
    42961 ggcgtttgac cgtcttgggc cacaccgcgc ggcgctgatg aactcgctgg gtgatgcgtt
    43021 aaaagcggca gatcaacacg cgaaagcgga agctatcggt caggccgata tgttcggcgt
    43081 gctggccgaa gagccggaac aaattgaaca atcctacgcc agctgccaac cgtggccgga
    43141 gcaggtggtg ttagatgggg aacgtgaaac gttaggtctg taccttacgg gacaccctat
    43201 caaccagtat ttaaaagaga ttgagcgtta tgtcggaggc gtaaggctga aagacatgca
    43261 cccgacagaa cgtggtaaag tcatcacggc tgcggggctc gttgttgccg cgcgggttat
    43321 ggtcaccaag cgcggcaatc gtatcggtat ctgcacgctg gatgaccgtt ccgggcggct
    43381 ggaagtgatg ttgtttactg acgccctgga taaataccag caattgctgg aaaaagaccg
    43441 catacttatc gtcagcggac aggtcagctt tgatgacttc agcggtgggc ttaaaatgac
    43501 cgctcgcgaa gtgatggata ttgacgaagc ccgggaaaaa tatgctagcg ggcttgctat
    43561 ctcgctgacg gacaggcaaa ttgatgacca gcttttaaac cgactccgtc agtctctgga
    43621 accccaccgc tctgggacaa ttccagtaca tctctactat cagagggcgg atgcacgcgc
    43681 gcggttgcgt tttggcgcga cgtggcgtgt ctctccgagc gatcgtttat taaacgatct
    43741 ccgtggcctc attggttcgg agcaggtgga actggagttt gactaataca ggaatactat
    43801 gagtctgaat ttccttgatt ttgaacagcc gattgcagag ctggaagcga aaatcgattc
    43861 tctgactgcg gttagccgtc aggatgagaa actggatatt aacatcgatg aagaagtgca
    43921 tcgtctgcgt gaaaaaagcg tagaactgac acgtaaaatc ttcgccgatc tcggtgcatg
    43981 gcagattgcg caactggcac gccatccaca gcgtccttat accctggatt acgttcgcct
    44041 ggcatttgat gaatttgacg aactggctgg cgaccgcgcg tatgcagacg ataaagctat
    44101 cgtcggtggt atcgcccgtc ttgacggtcg tccggtgatg atcattggtc atcaaaaagg
    44161 tcgtgaaacc aaagaaaaaa ttcgccgtaa ctttggtatg ccagcgccag aaggttaccg
    44221 caaagcactg cgtctgatgc aaatggctga acgctttaag atgcctatca tcacctttat
    44281 cgacaccccg ggggcttatc ctggcgtggg cgcagaagag cgtggtcagt ctgaagccat
    44341 tgcacgcaac ctgcgtgaaa tgtctcgcct cggcgtaccg gtagtttgta cggttatcgg
    44401 tgaaggtggt tctggcggtg cgctggcgat tggcgtgggc gataaagtga atatgctgca
    44461 atacagctcc tattccgtta tctcgccgga aggttgtgcg tccattctgt ggaagagcgc
    44521 cgacaaagcg ccgctggcgg ctgaagcgat gggtatcatc gctccgcgtc tgaaagagct
    44581 gaaactgatc gactccatca tcccggaacc gctgggcggc gctcaccgta acccggaagc
    44641 gatggcggca tcgttgaaag cgcaactgct ggcggatctg gccgatctcg atgtgttaag
    44701 cactgaagat ttaaaaaatc gtcgttatca gcgcctgatg agctacggtt acgcgtaatt
    44761 cgcaaaagtt ctgaaaaagg gtcacttcgg tggccctttt ttatcgccac ggtttgagca
    44821 ggctatgatt aaggaaggat tttccaggag gaacacatga acatcattgc cattatggga
    44881 ccgcatggcg tcttttataa agatgagccc atcaaagaac tggagtcggc gctggtggcg
    44941 caaggctttc agattatctg gccacaaaac agtgttgatt tgctgaaatt tatcgaacat
    45001 aaccctcgaa tttgcggcgt gatttttgac tgggatgagt acagtctcga tttatgcagc
    45061 gatatcaatc aacttaatga atatctcccg ctttatgcct tcatcaacac ccactcgacg
    45121 atggatgtca gcgtgcagga tatgcggatg gcgctctggt tttttgaata tgcgctgggg
    45181 caggcggaag atatcgccat tcgtatgcgt cagtacacca acgaatatct tgataacatt
    45241 acgccgccgt tcacgaaagc cttgtttacc tacgttaaag agcggaagta caccttttgt
    45301 acgccggggc atatgggcgg caccgcatat caaaaaagcc cggttggctg cctgttttat
    45361 gattttttcg gcgggaatac cctcaaggct gatgtctcta tttcggtcac cgagcttggt
    45421 tcgttgctcg accacaccgg gccacacctg gaagcggaag agtacatcgc gcggactttt
    45481 ggcgcggaac agagttatat cgttaccaac ggaacatcga cgtcgaacaa aattgtgggt
    45541 atgtacgccg cgccatccgg cagtacgctg ttgatcgacc gcaattgtca taaatcgctg
    45601 gcgcatctgt tgatgatgaa cgatgtagtg ccagtctggc tgaaaccgac gcgtaatgcg
    45661 ttggggattc ttggtgggat cccgcaccgt gaatttactc gcgacagcat cgaagagaaa
    45721 gtcgctgcca ccacgcaggc acaatggccg gttcatgcgg tgattaccaa ctccacctat
    45781 gatggcttgc tctacaacac cgactggatc aaacagacgc tggatgtccc gtcgatccac
    45841 ttcgattccg cctgggtgcc gtacacccat tttcatccga tctaccaggg gaaaagtgat
    45901 cttcgaaacg caatcgaccc acaaaatgct ggcggcgtta tcgcaggctt cgctgatcca
    45961 cattaaaggc gagtatgacg aagaggcgtt taacgaagcc tttatgatgc ataccaccac
    46021 ctcgcccagt tatcccattg ttgcttcggt tgagacggcg gcggcgatgc tgcgtggtaa
    46081 tccgggcaaa cggctgatta accgttcggt ggagcgggcg ctgcattttc gcaaagaggt
    46141 ccagcggttg cgggaagagt ctgacggttg gtttttcgat atctggcaac cgccgcaggt
    46201 ggatgaagcc gaatgctggc ccgttgcgcc aggcgaacag tggcacggct ttaacgatgc
    46261 ggatgccgat catatgtttc tcgatccggt taaagtcact attttgatac cggggatgga
    46321 cgaacagggc aatatgagcg aggaggggat cccggcggcg ctggtggcaa aattcctcga
    46381 cgaacgtggg atcgtagtag agaaaaccgg cccttataac ctgctgtttc tctttagtat
    46441 tggtatcgat aaaaccaaag caatgggatt attgcgtggg ttgacggaat ttaaacgctc
    46501 ttacgatctc aacctgcgga tcaaaaatat gctacccgat ctctatgctg aagatcccga
    46561 tttctaccgc aatatgcgta ttcaggatct ggcgcaaggg atccataagc tgattcgtaa
    46621 acacgatctt cccggtttga tgttgtgggc attcgatact ttgccggaaa ttatcatgac
    46681 gccacatcag gcatggcaga gacagattaa aggtgaagta gaaaccattg cgctggaaca
    46741 actggtcggt agagtatcgg caaatatgat cctgccttat ccaccgggcg taccgctgtt
    46801 gatgccagga gaaatgctga ccaaagagag ccgcacggta ctcgattttc tactgatgct
    46861 ttgttccgta gggcaacatt accccggttt tgaaacggat attcacggcg cgaaacagga
    46921 cgaagacggc gtttaccgcg tacgagtcct aaaaatggcg ggataacttg ccagagcggc
    46981 ttacgggcga gtaacgtgct gttaacaaat aaaggagacg ttatgctggg tttaaaacag
    47041 gttcaccata ttgcgattat tgcgacggat tatgcggtga gcaaagcttt ctactgcgat
    47101 attcttggtt tcacgctgca aagcgaagtc tatcgcgaag cgcgcgactc gtggaaaggg
    47161 gatttggcgc ttaatgggca atatgtgatt gagcttttct cttttccgtt cccgccggag
    47221 cgccccagcc gaccggaagc ttgcggcctg cgtcatctgg cttttagcgt tgatgacatc
    47281 gatgcggcag tggcgcacct tgaaagccat aacgtgaagt gtgaagccat ccgtgtcgat
    47341 ccatacacgc aaaaacgctt caccttcttt aacgatccgg acgggctgcc gttggaactg
    47401 tatgagcagt aaggcttgtc atcgccgcat ttgcccggta acgtgccggg cattgctact
    47461 gtaaaatcgc accatcatga cactcacgct caatagacaa cttctcacct cacgccagat
    47521 tttggtcgcc tttagcggcg ggcttgactc caccgttctg ctgcatcagt tggtgcagtg
    47581 gcggacggaa aatccgggcg tcactctgcg cgctattcat gtgcatcacg gtttaagtgc
    47641 caatgccgat gcctgggtta cgcattgcga aaacgtctgc caacagtggc aggtgccgct
    47701 ggtggtcgaa cgcgtacaac ttgcgcaaga ggggctgggg attgaggccc aggcgcggca
    47761 ggcgcgttat caggcatttg cccgtaccct attgcccggc gaagtgctgg tcaccgcgca
    47821 acatctcgac gatcaatgtg aaacctttct gctggcgcta aaacgcggta gcggccctgc
    47881 cgggctttcg gctatggcgg aagtttcgga gtttgccgga acacggctta tccgcccgtt
    47941 gcttgcccgc acgcgggggg aactggcgca gtgggcattg gcgcatggtt tacgctggat
    48001 tgaagacgaa agtaatcagg acgactcata cgatcgtaac tttctgcgcc tgcgcgtagt
    48061 gccgttattg cagcagcgtt ggccgcattt tgcggaagca acggcccgca gcgccgcact
    48121 ttgtgctgaa caagagagtc tgttggatga actgctggcg gatgatttag cacactgcca
    48181 aacgtcgcag gggacgctgc agattgcgcc aatgctggcg atgagtgatg cccgccgcgc
    48241 ggcgattatc cgtcgctggc tggcagggca gaatgcacca atgccttccc gcgacgcgct
    48301 ggtgcggatc tggcaggaag tggcgctggc gcgggaagat gcctccccct gtttacgctt
    48361 gggcgcgttt gaaatccgcc gctatcagtc gcaactgtgg tggattaaat ccgtcaccgg
    48421 gcaaagtgaa accattgtgc cgtggcagac gtggctacaa ccgctggaat taccggcggg
    48481 gctgggaagc gtacagctta ctgcgggagg cgatattcgc cctccgcgtg cagacgaagc
    48541 ggtcagcgtg cgtttcaaat cggcaggatt gctgcatatt gtcgggcgca acggcggacg
    48601 taagctgaag aaaatctggc aagagttagg cgtgccgccg tggctacgtg acaccacgcc
    48661 actgctgttt tatggcgaaa cgctgattgc ggcggcaggg gtatttgtga cgcaagaagg
    48721 tgtggctgaa ggtgagaatg gcgtaagttt tgtctggcag aaaacgctta gttaagtgaa
    48781 agccggataa gacgcatcaa acgtcgcatc cggcgaaagt caatcaggac tcgctcacca
    48841 ccaccgtacc gatttccggg tggctaaagc tggtaatttt atccagacgt agctcacggg
    48901 tttcgccagc ggcctcgacg accagatact ccacattttt gcgggagact aaatcgctgg
    48961 cttttgcctg caatttttcg ccatctttca gctcaagtgt cagcattaaa tgatgctggc
    49021 aggcgagctc aagattatcg taatcatcac aattgattgg ttgatacgta tcattcatta
    49081 acataatcgc tcaccagtaa gtttgccgca gcgtatgctg ctttttccct gacagcctca
    49141 gaaagggcgt cgtcggcagc catttcattc agcactttca aaacgcagcc cagcgcgtcc
    49201 ggaacgtatc ctaagtctcc gctggcgatt tccgcgtacc gcttgcgtat taactcacaa
    49261 tatttttcca catgccctcc tgtcagcaca ctgacttaac cgtggatgca agtctaagcc
    49321 tacgaagata aactctgttt cgcaaggtga ctataccaca ctcatttctg caatatcagc
    49381 gccgcaactg cacgtattcc gttacaatgg cctcctgatt cgaaaggagt tttcttatgg
    49441 cgcttaaagc gacaatttat aaagcgacgg ttaatgtggc cgatctcgac cgcaaccagt
    49501 ttctcgatgc ctctctgacg ctggcgcgcc acccttcaga aacccaggag cgtatgatgc
    49561 tgcgcctgct ggcgtggctg aaatatgctg atgaacgtct gcaatttacc cgtggtttgt
    49621 gtgccgatga tgagccggaa gcgtggctgc gtaacgatca cctgggcatt gatttgtgga
    49681 ttgagctggg gctgccggat gagcggcgga ttaagaaagc ctgcacccag gccgcagaag
    49741 tggcgctgtt tacctataat agtcgggcgg cgcaaatctg gtggcagcaa aatcagagca
    49801 aatgtgtgca gtttgccaat ctttccgtct ggtatctgga cgatgaacaa ctggcgaaag
    49861 taagcgcctt tgccgatcgt accatgacgc tgcaggcaac gattcaggat ggcgtgatct
    49921 ggttatcgga cgataagaat aatctggaag ttaacttaac cgcctggcaa caaccttcat
    49981 gattgtgatt tcccgacatg ttgctattcc cgatggtgag cttgagatca ccgccattcg
    50041 tgcgcagggc gcgggcgggc agcatgttaa taagacctca acggccattc atctgcgttt
    50101 tgacattcgg gcgtccagcc tgccagagta ttacaaagag cgtctgctcg ccgccagcca
    50161 tcatttgatc agcagtgatg gcgtgattgt cattaaggca caggaatacc gcagtcagga
    50221 actgaaccgc gaagccgcgc tagcccggct ggtggcagtg attaaagatt taacaacaga
    50281 acaaaaagcc cgacgaccca cgcggcccac ccgtgcatcg aaagagcgca ggctggcatc
    50341 gaaagcacaa aaatcaagcg cgaaggcgat gcgcggcaaa gtacgcagcg gtcgggaata
    50401 aaaagaagga atagatggtg aaaaaagcga tagtgacagc gatggctgta atcagcctct
    50461 ttactctgat gggatgtaat aaccgggccg aagtcgatac gctttctcca gcacaggctg
    50521 ccgaactgaa accgatgccg caaagttggc gcggcgtgct gccgtgtgct gattgtgaag
    50581 gaatcgaaac ctctctgttc ctcgaaaaag acggaacatg ggtgatgaat gagcgttatc
    50641 tcggtgctcg tgaagaacct tcctccttcg cttcccacgg tacatgggcg cgaaccgctg
    50701 acaagctggt attaaccgac agcaaaggtg aaaagtcata ttatcgggcg aaaggcgatg
    50761 cgctggagat gctcgatcgt gaaggcaatc cgattgaatc gcagttcaac tatacgctgg
    50821 aaccggcaca atccagttta cctatgacgc cgatgaccct gcgaggcatg tatttttata
    50881 tggctgatgc ggcgaccttc actgattgcg cgaccggaaa acgtttcatg gtagcgaata
    50941 acgcagagct ggagcgtggc tacctggctg cgcgcggtca cagtgaaaaa ccggtgttac
    51001 tgtcagtaga aggtcacttt acgcttgagg ctaatccgga tactggtgcg ccaaccaaag
    51061 tattagcgcc cgatacggcg ggtaaatttt acccgaataa ggattgcagt agtttggggc
    51121 agtaaacctg cttaaggcag aaacaaacgc aaaacaggcc agaaggatat atttcaacat
    51181 tttgaatttg cacgtttttt gtaggccgga taaggcgttt acgccgcatc cggcaatggt
    51241 gctcaacgcc tgatgcgacg ctggcgcgtc ttatcatgcc tacaaccccc ctcatacctt
    51301 aaggcggata aggcatttac tttatcaccg ggtcaaacca acaaagcgac ccgccttgat
    51361 ataaatccct ggcttcaggt gcccaacata ctgtaactgc gtttctggct taaacgcaga
    51421 gacatcacca atacgcatat gcatcagatc ggcagggcta atccagcccg attgcgccag
    51481 tgtaagtgga tgtccggctt tggcaaatgc atcagtgaca aattccgaac aaaaccacga
    51541 ctttttgtct ccttcgccca cactgcttaa ctgcgctttc gccaggccgc tgacgcactg
    51601 ctggcgaaaa tcctcggaga actgattcag tgagcacatc tggcgagtca ccataaaggg
    51661 aataaattcg acaatgccgc gatagttata accgctatct ttgattttat tggcaaacgc
    51721 ggtgatatct gtggcttgtt gcggggtaag atccgggact cgtaagacga aaagcttatc
    51781 actatgcttc atcgcttttt taagggaaac aatctggacg ccagcgcctg tcgcttctgc
    51841 aacgttatta tcacccagaa agattgcaac gtgactcaca gaggaagtgc tgaagacgcg
    51901 gattccaaat gaggttaccc caaggcttga ggagaacagc aaatcgccgg gtttgagatc
    51961 aggtgccgtt atttctttta ttgattgttc ggtgaaagag ctttgatgct ggaatttgac
    52021 agcccatgtt tttgcctcgg catctactgc tgtggctgat ggggctggct gatatcaacg
    52081 gtacaagccg aaagtaaaag aaagctgggg agaagcaggc ggcagtacgc ctttggttta
    52141 tccattttat acaatccatg taaaaaaggg ccctgaaatt caggaccctt tctggcatca
    52201 gcctttaatc tgtttcacca gatattcgac gatgtcacca gtcttaatta actgtttctc
    52261 gccgttgcga cgatatttat attcgatatc gtcgttgtcg aggttacggt cgcccagcac
    52321 aatagtgtgc ggaataccga tcagttccat atcagcaaac atcacgcccg gacgctcttt
    52381 gcggtcatcc agcagcactt cgataccttg tgcacgcagt tcgctgtaca gtttctcagc
    52441 aagctcttgt acgcggaagg atttgtgcat gttcatcggc agaatcgcca cctggaacgg
    52501 cgcgatagcg tcaggccata cgatgccgcg ttcgtcgtag ttctgctcaa tcgccgcagc
    52561 taccacacgc gttaccccga taccgtagca acccatcgtc aggatttggt tacggccatc
    52621 ttcaccctgt acggaggctt tcagtgcttc ggagtacttg gtacccagct ggaagatgtg
    52681 accaacttcg ataccacgtt tgatcagcag cgtaccctgg ccatccgggc ttggatcgcc
    52741 agccaccacg ttacggatat ctgcaacttc cggggtagcg acatcgcgat cccagttgat
    52801 accgaagtag tgtttaccat cgatgttagc accagcagcg aaatcactca tcgccgcaac
    52861 ggtacggtca atcaccaccg gaatcggcat gtttaccgga cccagtgaac ccggaccggc
    52921 tttaaccaca gcacgaattt cttcttcggt cgcgaaagtc agcgggcttg caacctgcgg
    52981 cagtttttct gctttaactt cgttcagctc gtgatcaccg cgcaccagca gcgcaaccag
    53041 cgggaagctg ctgccttcaa ccgctttaac cagcagagtc ttaaccgttt tctcaatcgg
    53101 cagattgaac tgttcaacca gttccgcgat ggttttcgcg ttcggcgtat caaccagcgt
    53161 catttcctgg gtagcagcag cgcgcggttc tttcggcgcg atagcttctg ccagttcaat
    53221 gttcgctgca tagtcagagg tgtcggagaa gaccacatcg tcttcaccgc tctgcgccag
    53281 cacctggaat tcgtgagagg cgctgccgcc gatagaaccg gtgtcggctt gcacggcgcg
    53341 gaaatccagc cccatgcggc tgaagatttt gctgtaggcc gcatacattg catcgtaggt
    53401 ttcctgcagg gattcctgag aagtatggaa agagtaagca tctttcatca ggaattcgcg
    53461 ggaacgcatg acgccgaaac gcggacgcac ttcgtcgcgg aacttggtct ggatctgata
    53521 gaagttcagc ggcagctgtt tgtaagagct aagctcgtta cgaatcaggt cagtgataac
    53581 ttcttcatga gttgggccga gtacgaacgg acgctcgcca cggtcaacaa aacgcagcag
    53641 ttccggaccg tactgttccc aacgaccact ctcttgccac aaatcggctg gctgaaccac
    53701 cggcatcgac acctcgattg caccggcgtt gttcatctct tcacgcacga tgttttcgac
    53761 ttttttcaga acgcgcacgc cggtcggcag ccaggtatat aacccggagg ccagcttgcg
    53821 gatcatcccg gcgcgcagca tcagctgatg gctgatcacc tcggcgtcgg caggtgtctc
    53881 cttgagagtg gagagcaggt attggctagt acgcatgttg ttacggttcc agttggaagg
    53941 tagaacaggc tcaaggcgag cctgggacaa aaaaagtgat ttagtttacc agtgcaaaag
    54001 aaatgtcaaa agagaagggc gtgaatttaa cgcggttcca gcgcaaagac ttcaaaacct
    54061 gcgtcggtga cgcgccagcg aacgttaaaa tcatgtagcc agacggcata ggttttgccc
    54121 gtttcctcac ctttatgata ggccgggcgc gggtcctgcg ccagtacttc gcggataaac
    54181 agcgttaact gcggataacg cttctccagc gtcaaaagct gcttttcgac ctctgcggta
    54241 aaactcaccg ccatctctgc agctggcgca ctttgcgcat agctggcact ggcatcggga
    54301 agcgattcgg caaaggggag atacggtttg atatccacta ccggcgtacc atcgaccaga
    54361 tccagactgc cgagcttcag aatcacgctg tctttatggc aaacaacctc tttcagctct
    54421 accagcgaca taccaattgg gttagggcgg aaagtagagc gtgttgcgaa aacccccatt
    54481 ctggcgttac cgccgaggcg cggtggacgc acagtcggac gccagccgcc ttccatcgtt
    54541 tgatgaaaga cgaaaaggat ccataaatgg ctgaacgctt ccaggccgcg aacggcgtcg
    54601 gcctggttgt agggagcaat gagatgcagt tcgccgttgg cgctttttac cagacctggc
    54661 tggcgcggaa cggcgaattt ttctttatag ggcgagcgaa taacgcctat ttgctcgaac
    54721 tggaaactgc tcatttcgcc gtaatgttaa gcgcagagcc gatacataca gcctgacgat
    54781 agcagcctgg cgtaccgctg gtgacttcgc agctatgcag taataccgca ttggctttca
    54841 ttttagaggc gttgatttgc atccgcttac gcgcggttgg aatgctcggc ggagagtcct
    54901 gattagaggc ctggcaagag tcgccactga cttcaccgag atcgcggaac ggtttgccga
    54961 ctaattcttc tgcattggta taaattcgga ccggcgtggc gcgcggcgct ttcggttttg
    55021 caggctccgc tttcggctgg ggtgcagtgc tttgaacggg ttcgacaggg gatctgctta
    55081 acatggaaca gccgcttagc atgagtgcta ctaaacagat cggtaaagca cgcatagtat
    55141 ttcctcaatg tatgatcaaa acgtcaatat tgaatcagga gcttgtaaaa atgacaagac
    55201 gggcaagtgc ccatcctgaa tgatattaca aattgtggaa acagcctaaa aattaccagc
    55261 ctttaacagc gccgccgtta aacactttgt ttgctgcttc gtaaacttca tcagactgat
    55321 aagcctggac gaatttcttc acgttctcgg cgtctttgtt atcttcacgc gttacgatca
    55381 ggtttacgta cggggagtct ttatcttcga caaagatacc gtctttcgct ggagtcaggc
    55441 caatctggct ggcataggtg gtattgataa ctgccagagc gatttgtgcg tcgtccagag
    55501 atcgaggcag ctgcggtgct tccagctcaa caattttcag attttttggg ttctcaacaa
    55561 catcaagtac ggtcggcagc aggccaacgc catctttcag tttgatcaag cccacttttt
    55621 gcagcagcag cagtgaacga ccaaggttag ttggatcgtt tggcacggca acctgcgaac
    55681 catcctgcag ttcatccagt gatttgattt tcttggagta accagcaatc ggataaacaa
    55741 aagtgttgcc tactgcgacc agtttgtagc cacgatcttt cagttgctga tcaaggtacg
    55801 gtttatgctg gaaggcgttg gcgtcgatat cgcctttgct caatgcttcg tttggcagaa
    55861 catagtcgtt gaaggttacc agctcaacgt ccaggccata tttgtctttc gcaactttct
    55921 gcgcgacttc tgcaacctgc tgttcggcac caacaatcac gccgacttta atgtggtttg
    55981 gatctttttc atcctgaccg cagcctacca gtgccagtga tccaatcagg gctcccactg
    56041 ccgcaaaggt tttgaatttg aacgccatac cttattcctt cttcaattat ttatgttgtg
    56101 ttgaacgtta cttgcgagtg acagcccgga cgatgcggtc gcctgcgaac tgaattaaat
    56161 aaaccagaat gaccagcaat accagtaccg tattcatcac cgtcgcgtta tagccgatgt
    56221 agccatactg atagccaatc tgacctaaac caccggcacc gacagcacca cccatcgcgg
    56281 aataaccgac tagggtaatc agggtgatag ttgccgcatt caccagaccc ggcaatgctt
    56341 ccggtaacag cactttacgg acgatctgca tcggcgtggc acccattgca cgggaagctt
    56401 caattaaccc ggttgggatc tccagcagag cgttctcgac catacgggca ataaacggtg
    56461 ctgcaccaac ggttaacgga acaatcgctg cctgcaaacc aatcgatgta ccaacaataa
    56521 cgcgggtaaa cggaatcatc cataccagca agataatgaa cgggatagaa cggaaaatgt
    56581 tcacaatcgc agaaacggta cgatacagct tcgcgttagc aataatttgc cccggacgcg
    56641 tgacataaag cagaacgcca accggcagac caatcacaaa gccaaaaaaa ccggatacga
    56701 aggtcattgc cagcgtttcc catacgccac gaaccagcag ccacatcatc ggctcagaca
    56761 taacccagta cctctacttt tacatggtgt tcctgcagcc aggcaatggc ggcttgcgta
    56821 tcttgttgtg tgccgtgcat ttcagtcagc atgatgccga acttaacgcc accggcgtag
    56881 tccatctgcg cgctaataat gttgttgttg acgttgaaac gacgcgcggt ttcagaaagc
    56941 agtggggcat cgaccgattg accggtaaac tccagacgca gcatcggcac gcagtcagta
    57001 aatggctccg cttgcagacg ttcctggtaa tcttccggga tatccagatg cagggtcgac
    57061 tgaataaact tctgcgccag cggcgtttta ggatgcgaga acacttcact taccgtgtcc
    57121 tgctcgatca gttcgccatt gctgatgacc gccacgcaat cacaaatacg cttcacaacg
    57181 tccatttcgt gggtgatcaa cagaatcgtc aaacccagac ggcggttaat gtctttcagc
    57241 agttcgagaa tagaacgtgt cgttgccggg tccagcgcgc tggtggcttc atcacacagc
    57301 aatactttgg gattgctggc taatgcacgg gcaatcgcca cacgttgttt ctgcccaccg
    57361 gaaagattcg acgggtagct atcatgctta tcgccaagac caaccaatga cagcaattcc
    57421 gtcacgcgac gtttgatctc gtctttcggt gtgttgtcca gctccagcgg cagagccacg
    57481 ttgccaaaaa cagtacgcga agagagcagg ttaaaatgct ggaaaatcat accaatctgg
    57541 cggcgagctt tggtcaactc ggattctgac agcgtggtca gttcctggcc atcgaccagc
    57601 acgctaccct cggttgggcg ctccagcagg tttacacaac gtataagcgt actcttaccc
    57661 gcgcctgagg caccgataac gccataaatt tgtccagctg gcacatgcag gctgacgttg
    57721 ttcaacgcct ggatgatgcg ggtgccctgg tggaacactt tggtgatatt cgaaagtttt
    57781 atcattgatt atttattatc gtcattaagt tagtcgtggc atctcgaatg cctgaaacgg
    57841 gcaacgccgt caatgaaatg gatgttaagg catccagacg tctaaatcaa tcaggtttat
    57901 gcgaagagca ctttcttgca ggtcgaaaca tgcgatacta gcgtcacatg ccttattaag
    57961 gagctataaa aggtggcaaa gagcgtaccc gcaatttttc ttgaccgtga tggcaccatt
    58021 aatgtcgatc acggctatgt ccatgagatc gacaactttg aatttatcga cggtgttatt
    58081 gacgccatgc gcgagctaaa aaaaatgggc tttgtgctgg tggtagtaac caaccagtct
    58141 ggcattgctc gcggtaaatt taccgaagca cagtttgaaa cgctgaccga gtggatggac
    58201 tggtcgctgg cggaccgaga tgtcgatctg gatggtatct attattgccc gcatcatccg
    58261 cagggtagtg ttgaagagtt tcgccaggtc tgcgactgcc gtaaaccaca tccggggatg
    58321 cttttgtcag cacgcgatta tttgcatatt gatatggccg cttcttatat ggtgggcgat
    58381 aaattagaag atatgcaggc agcggctgcg gcgaacgtgg gaacaaaagt gctggtgcgt
    58441 acgggtaaac ctattacgcc tgaagcagaa aacgcggcgg attgggtgtt aaatagcctg
    58501 gcagacctgc cgcaagcgat aaaaaagcag caaaaaccgg cataatgatt aaaagatgag
    58561 cgattgaaat aaaaatgcat ttttccactt gtcttcctga gacgactccc tataatgcgc
    58621 ctccatcgac acggcggatg tgaatcactt cacacaaaca gccggttcgg ttgaagagaa
    58681 aaatcctgaa attcagggtt gactctgaaa gaggaaagcg taatatacgc cacctcgcga
    58741 cagtgcgcta aagtgcgtcg caactgctct ttaacaattt atcaggcaat ctgtgtgggc
    58801 actcgaagat acggattctt aacgtcgcaa gacgaaaaat g
//
LOCUS       DAJVSY010000006        47217 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.006, whole genome shotgun sequence.
ACCESSION   DAJVSY010000006 DAJVSY010000000
VERSION     DAJVSY010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 47217)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 47217)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..47217
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.006"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            27..764
                     /locus_tag="OQQ19_000367"
     CDS             27..764
                     /locus_tag="OQQ19_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone"
                     /protein_id="HCS1802118.1"
                     /translation="MPARHLYFIMTNTWNRLALLIFAVLSLLVAGELRAGVVVGGTRF
                     IFPADRESISILLTNTSQESWLINSKINRPTRWAGGKASTVPAPLLAAPPLILLKPGT
                     TGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPG
                     DPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNAGVVPPKSQRQTSWCQ
                     AIAPCHVAWRAINDYDGLSAKKEQNLP"
     gene            875..1885
                     /gene="pyrD"
                     /locus_tag="OQQ19_000368"
     CDS             875..1885
                     /gene="pyrD"
                     /locus_tag="OQQ19_000368"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HCS1802119.1"
                     /translation="MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPA
                     KPVNCMGLTFKNPLGLAAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFR
                     LVDAEGLINRMGFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICME
                     KIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKI
                     APDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKST
                     EIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVT
                     HI"
     gene            2059..2601
                     /gene="zapC"
                     /locus_tag="OQQ19_000369"
     CDS             2059..2601
                     /gene="zapC"
                     /locus_tag="OQQ19_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415466.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapC"
                     /protein_id="HCS1802120.1"
                     /translation="MRIKPDDNWRWYYDEEHDRMMLDLANGMLFRSRFARKMLTPDAF
                     SPAGFCVDDAALYFSFEEKCRDFNLSKEQKAELVLNVLVAIRYLKPQMPKSWHFVSHG
                     EMWVPMPGDAACVWLSDTHEQVNLLVVESGENAALCLLAQPCVVIAGRAMQLGDAIKI
                     MNDRLKPQVNVDSFSLEQAV"
     gene            complement(2598..3707)
                     /gene="ycbX"
                     /locus_tag="OQQ19_000370"
     CDS             complement(2598..3707)
                     /gene="ycbX"
                     /locus_tag="OQQ19_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-N-hydroxylaminopurine resistance protein YcbX"
                     /protein_id="HCS1802121.1"
                     /translation="MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGT
                     FITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIA
                     PDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQ
                     RCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQ
                     KHPAGEPLKTLQSFRTAQDNGDVDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAA
                     ADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQ
                     ILEGEVSPLKKSAMGDDGTILCCSCVPKTALKLAR"
     gene            3951..6059
                     /gene="rlmKL"
                     /locus_tag="OQQ19_000371"
     CDS             3951..6059
                     /gene="rlmKL"
                     /locus_tag="OQQ19_000371"
                     /EC_number="2.1.1.173"
                     /EC_number="2.1.1.264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 23S rRNA
                     (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA
                     (guanine(2445)-N(2))-methyltransferase RlmL"
                     /protein_id="HCS1802122.1"
                     /translation="MNSLFASTARGLEELLKTELENLGAVECQVVQGGVHFKGDTRLV
                     YQSLMWSRLASRIMLPLGECKVYSDLDLYLGVQAINWTEMFNPGATFAVHFSGLNDTI
                     RNSQYGAMKVKDAIVDAFTRKNLPRPNVDRDAPDIRVNVWLHKETASIALDLSGDGLH
                     LRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGL
                     HRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNAR
                     LAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK
                     NQFGGWNLSLFSASPDLLSCLQLRADKQYKAKNGPLDCVQKNYHVAESTPDSKPAMVA
                     EDYANRLRKNLKKFEKWARQEGIECYRLYDADLPEYNVAVDRYSDWVVVQEYAPPKTI
                     DAHKARQRLFDIIAATISVLGIAPNKLVLKTRERQKGKNQYQKLGEKGEFLEVTEYNA
                     HLWVNLTDYLDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTGSATVHAGLGGALSTTT
                     VDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKR
                     MEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEITQKT
                     LSQDFARNRQIHNCWLITAA"
     gene            6071..7978
                     /locus_tag="OQQ19_000372"
     CDS             6071..7978
                     /locus_tag="OQQ19_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1802123.1"
                     /translation="MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKST
                     LMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYH
                     DISRLVMNDPSEKNLNELAKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGG
                     WLRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRN
                     MATRIVDLDRGKLVTYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKA
                     RRTRNEGRVRALKAMRRERGERREVMGTAKMQVEEASRSGKIVFEMEDVCYQVDGKQL
                     VKDFSAQVLRGDKIVLIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRA
                     ELDPDKTVMDNIAEGKQEVMVNGKPRHVLSYLQDFLFHPKRAMTPVRALSGGERNRLL
                     LARLFLKPSNLLILDEPTNDLDVETLELLEELIDSYQGTVLLVSHDRQFVDNTVTECW
                     IFEGGGKIGRYVGGYHDARGQQEQYVALKQPAVKKTEEAAAAKAETVKRSSSKLSYKL
                     QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER
                     WEYLEALKNGG"
     gene            8108..9361
                     /gene="pqiA"
                     /locus_tag="OQQ19_000373"
     CDS             8108..9361
                     /gene="pqiA"
                     /locus_tag="OQQ19_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiA"
                     /protein_id="HCS1802124.1"
                     /translation="MCEHHHAAKHILCSQCDMLVALPRLEHGQKAACPRCGTTLTVAW
                     DAPRQRPTAYALAALFMLLLSNLFPFVNMNVAGVTSEITLLEIPGVLFSEDYASLGTF
                     FLLFVQLVPAFCLITILLLVNRAELPVRLKEQLARVLFQLKTWGMAEIFLAGVLVSFV
                     KLMAYGSIGVGSSFLPWCLFCVLQLRAFQCVDRRWLWDDIAPMPELRQPLKPGVTGIR
                     QGLRSCSCCTAILPADEPVCPRCSTKGYVRRRNSLQWTLALLVTSIMLYLPANILPIM
                     VTDLLGSKMPSTILAGVILLWSEGSYPVAAVIFLASIMVPTLKMIAIAWLCWDAKGHG
                     KRDSERMHLIYEVVEFVGRWSMIDVFVIAVLSALVRMGGLMSIYPAMGALMFALVVIM
                     TMFSAMTFDPRLSWDRQPESEHEES"
     gene            9366..11006
                     /gene="pqiB"
                     /locus_tag="OQQ19_000374"
     CDS             9366..11006
                     /gene="pqiB"
                     /locus_tag="OQQ19_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706874.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intermembrane transport protein PqiB"
                     /protein_id="HCS1802125.1"
                     /translation="MESNNGEAKIQKVKNWSPVWIFPIVTALIGAWVLFYHYSHQGPE
                     VTLITANAEGIEGGKTTIKSRSVDVGVVESATLADDLTHVEIKARLNSGMEKLLHKDT
                     VFWVVKPQIGREGISGLGTLLSGVYIELQPGAKGSKMDKYDLLDSPPLAPPDAKGIRV
                     ILDSKKAGQLSPGDPVLFRGYRVGSVETSTFDTQKRNISYQLFINAPYDRLVTSNVRF
                     WKDSGIAVDLTSAGMRVEMGSLTTLLSGGVSFDVPEGLDLGQPVAPKTAFVLYDDQKS
                     IQDSLYTDHIDYLMFFKDSVRGLQPGAPVEFRGIRLGTVSKVPFFAPNMRQTFNDDYR
                     IPVLIRIEPERLKMQLGENTDVVEHLGELLKRGLRGSLKTGNLVTGALYVDLDFYPNT
                     PAITGIREFNGYQIIPTVSGGLAQIQQRLMEALDKINKLPLNPMIEQATSTLSESQRT
                     MKNLQTTLDSMNKILASQSMQQLPTDMQSTLRELNRSMQGFQPGSAAYNKMVADMQRL
                     DQVLRELQPVLKTLNEKSNALVFEAKDKKDPEPKRAKQ"
     gene            11003..11566
                     /gene="pqiC"
                     /locus_tag="OQQ19_000375"
     CDS             11003..11566
                     /gene="pqiC"
                     /locus_tag="OQQ19_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HCS1802126.1"
                     /translation="MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNR
                     LLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGW
                     VVASQPLGSVQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDG
                     YDEMVKVLAGVWSQEAASIAQEIKRLP"
     gene            11822..11989
                     /gene="rmf"
                     /locus_tag="OQQ19_000376"
     CDS             11822..11989
                     /gene="rmf"
                     /locus_tag="OQQ19_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome modulation factor"
                     /protein_id="HCS1802127.1"
                     /translation="MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGW
                     REAMADRVVMA"
     gene            complement(12059..12577)
                     /gene="fabA"
                     /locus_tag="OQQ19_000377"
     CDS             complement(12059..12577)
                     /gene="fabA"
                     /locus_tag="OQQ19_000377"
                     /EC_number="4.2.1.59"
                     /EC_number="5.3.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014915875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-hydroxydecanoyl-ACP
                     dehydratase/trans-2-decenoyl-ACP isomerase"
                     /protein_id="HCS1802128.1"
                     /translation="MVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMT
                     ETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEG
                     KGRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASD
                     LKVGLFQDTSAF"
     gene            complement(12646..14406)
                     /locus_tag="OQQ19_000378"
     CDS             complement(12646..14406)
                     /locus_tag="OQQ19_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lon protease family protein"
                     /protein_id="HCS1802129.1"
                     /translation="MTITKLAWRDLVPDTDSYQEIFAQPHLIDENDPLFSDTQPRLQF
                     ALEQLLHTRASSSFMLAKAPEESEYLNLIADAARTLQSDAGQLVGDHYEVSGHSIRLR
                     HAVSADDNFATLTQVVAADWVEAEQLFGCLRQFNGDITLQPGLVHQANGGILIISLRT
                     LLAQPLLWMRLKNIVNRERFDWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQE
                     MEPELSEQAIYSEFEDTLQIVDAESVSQWCRWVTFTARHNHLPAPGADAWPVLIREAA
                     RYTGEQETLPLSPQWILRQCKEVASLCDGDTFSGEQLNLMLQQREWREGFLAERMQDE
                     ILQEQILIETEGERIGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFTDIERKAE
                     LGGNIHAKGMMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISA
                     LADVPVNQSIAITGSVDQFGRAQPVGGLNEKIEGFFAICQQRELTGKQGVIIPTANVR
                     HLSLHSELVKAVEEGKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQERIAQASQ
                     QEGRHRFPWPLRWLNWFIPN"
     gene            14592..15044
                     /gene="matP"
                     /locus_tag="OQQ19_000379"
     CDS             14592..15044
                     /gene="matP"
                     /locus_tag="OQQ19_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ter protein MatP"
                     /protein_id="HCS1802130.1"
                     /translation="MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVL
                     LSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQ
                     RLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKLDLQALLGKE"
     gene            complement(15120..16160)
                     /gene="ompA"
                     /locus_tag="OQQ19_000380"
     CDS             complement(15120..16160)
                     /gene="ompA"
                     /locus_tag="OQQ19_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpA"
                     /protein_id="HCS1802131.1"
                     /translation="MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGF
                     INNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTA
                     KLGYPITDDLDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRL
                     EYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLK
                     SDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSER
                     RAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV
                     KGIKDVVTQPQA"
     gene            complement(16517..17026)
                     /gene="sulA"
                     /locus_tag="OQQ19_000381"
     CDS             complement(16517..17026)
                     /gene="sulA"
                     /locus_tag="OQQ19_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division inhibitor SulA"
                     /protein_id="HCS1802132.1"
                     /translation="MYTSGYAHRSSSFSSAASKIARVSTENTTAGLISEVVYREDQPM
                     MTQLLLLPLLQQLGQQSRWQLWLTPQQKLSREWVQASGLPLTKVMQISQLSPCHTVES
                     MVRALRTGNYSVVIGWLADDLTEEEHAELVDAANEGNAMGFIMRPVSASSHATRQLSG
                     LKIHSNLYH"
     gene            17245..17874
                     /gene="sxy"
                     /locus_tag="OQQ19_000382"
     CDS             17245..17874
                     /gene="sxy"
                     /locus_tag="OQQ19_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRP-S regulon transcriptional coactivator Sxy"
                     /protein_id="HCS1802133.1"
                     /translation="MKSLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVDDTVFAMVS
                     DGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKLVRLSKYS
                     LDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
                     SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE"
     gene            complement(17837..19999)
                     /gene="yccS"
                     /locus_tag="OQQ19_000383"
     CDS             complement(17837..19999)
                     /gene="yccS"
                     /locus_tag="OQQ19_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309071.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01666 family membrane protein"
                     /protein_id="HCS1802134.1"
                     /translation="MAFMLSPLLKRYTWNSAWLYYARIFIALCGTTAFPWWLGDVKLT
                     IPLTLGMVAAALTDLDDRLAGRLRNLIITLFCFFIASASVELLFPWPWLFAIGLTLST
                     SGFILLGGLGQRYATIAFGALLIAIYTMLGTSLYEHWYQQPMYLLAGAVWYNVLTLIG
                     HLLFPVRPLQDNLARCYEQLARYLELKSRMFDPDIEDESQAPLYDLALANGLLMATLN
                     QTKLSLLTRLRGDRGQRGTRRTLHYYFVAQDIHERASSSHIQYQTLREHFRHSDVLFR
                     FQRLMSMQGQACQQLSRCILLRQPYQHDPHFERAFTHIDAALERMRDNGAPADLLKTL
                     GFLLNNLRAIDAQLATIESEQAQALPHNNDENELADDSPHGLSDIWLRLSRHFTPESA
                     LFRHAVRMSLVLCFGYAIIQITGMHHGFWILLTSLFVCQPNYNATRHRLKLRIIGTLV
                     GIAIGIPVLWFVPSLEGQLVLLVITGVLFFAFRNVQYAHATMFITLLVLLCFNLLGEG
                     FEVALPRVIDTLIGCAIAWAAVSYIWPDWQFRNLPRMLERATEANCRYLDAILEQYHQ
                     GRDNRLAYRIARRDAHNRDAELASVVSNMSSEPNVTPQIREAAFRLLCLNHTFTSYIS
                     ALGAHREQLTNPEILAFLDDAVCYVDDALHHQPADEERVNEALASLKQRMQQLEPRAD
                     SKEPLVVQQVGLLIALLPEIGRLQRQITQVPQETPVSA"
     gene            complement(20009..20455)
                     /locus_tag="OQQ19_000384"
     CDS             complement(20009..20455)
                     /locus_tag="OQQ19_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YccF domain-containing protein"
                     /protein_id="HCS1802135.1"
                     /translation="MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEI
                     TKLSLVPYGNEAIHVDELNPAGKNVLLNTGGTVLNIFWLIFFGWWLCLMHIATGIAQC
                     ISIIGIPVGIANFKIAAIALWPVGRRVVSVETAQAAREANARRRFE"
     gene            20578..22632
                     /gene="helD"
                     /locus_tag="OQQ19_000385"
     CDS             20578..22632
                     /gene="helD"
                     /locus_tag="OQQ19_000385"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase IV"
                     /protein_id="HCS1802136.1"
                     /translation="MELKATTLGKRLAQHPYDRAVILNAGIKVSGDRHEYLIPFNQLL
                     AIHCKRGLVWGELEFVLPDEKVVRLHGTEWGETQRFYHHLDAHWRRWSGEMSEIASGV
                     LRQQLDLIATRTGENKWLTREQTSGVQQQIRQALSALPLPVNRLEEFDNCREAWRKCQ
                     AWLKDIESARLQHNQAYTEAMLTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGA
                     GSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRERLHTEDITARTFH
                     ALALHIIQQGSKKVPIVSKLENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQ
                     WSVPEGNFWDDEKLQRRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLM
                     APLLKAWKGALKAENAVDFSGLIHQAIVILEKGRFISPWKHILVDEFQDISPQRAALL
                     AALRKQNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENFGEGERCDLDTTYRFNSRI
                     GKVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALLDKLSGYAKPEERILIL
                     ARYHHMRPASLEKAATRWPKLQIDFMTIHASKGQQADYVIIVGLQEGSDGFPAAARES
                     IMEEALLPPVEDFPDAEERRLMYVALTRARHRVWALFNKENPSPFVEILKNLDVPVAR
                     KP"
     gene            complement(22664..23122)
                     /gene="mgsA"
                     /locus_tag="OQQ19_000386"
     CDS             complement(22664..23122)
                     /gene="mgsA"
                     /locus_tag="OQQ19_000386"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415483.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HCS1802137.1"
                     /translation="MELTTRTLPARKHIALVAHDHCKQMLMSWVERHQPLLEQHVLYA
                     TGTTGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDV
                     KALLRLATVWNIPVATNVATADFIIQSPHFNDAVDILIPDYQRYLADRLK"
     gene            complement(23218..23880)
                     /locus_tag="OQQ19_000387"
     CDS             complement(23218..23880)
                     /locus_tag="OQQ19_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2057 family protein"
                     /protein_id="HCS1802138.1"
                     /translation="MKTGIVTTLIALCLPVSVFATTLRLSTDVDLLVLDGKKVSSSLL
                     RGADSIELDNGPHQLVFRVEKTIHLSNSEERLYISPPLVVSFNTQLINQVNFRLPRLE
                     NEREANHFDAAPRLELLDGDATPIPVKLDILAITSTAKTIDYEVEVERYNKSAKRASL
                     PQFATMMADDSTLLSGVSELDAIPPQSQVLTEQRLKYWFKLADPQTRNTFLQWAEKQP
                     SS"
     gene            24053..24466
                     /locus_tag="OQQ19_000388"
     CDS             24053..24466
                     /locus_tag="OQQ19_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HCS1802139.1"
                     /translation="MKETDIAGILTSTHTIALVGASDKPDRPSYRVMKYLLDQGYHVI
                     PVSPKVAGKTLLGQQGYGTLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWMQL
                     GVINEQAAVLARDAGLNVVMDRCPAIEIPRLGLAK"
     gene            complement(24511..24828)
                     /gene="hspQ"
                     /locus_tag="OQQ19_000389"
     CDS             complement(24511..24828)
                     /gene="hspQ"
                     /locus_tag="OQQ19_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock protein HspQ"
                     /protein_id="HCS1802140.1"
                     /translation="MIASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVND
                     ELRAAPWYHVVMEDDNGLPVHTYLAEAQLSSELQDEHPEQPSMDELAQTIRKQLQAPR
                     LRN"
     gene            complement(24886..26076)
                     /gene="rlmI"
                     /locus_tag="OQQ19_000390"
     CDS             complement(24886..26076)
                     /gene="rlmI"
                     /locus_tag="OQQ19_000390"
                     /EC_number="2.1.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415487.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytosine(1962)-C(5))-methyltransferase
                     RlmI"
                     /protein_id="HCS1802141.1"
                     /translation="MSVRLVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVD
                     HQGKWLARGAYSPASQIRARVWTFDPSESIDIAFFSRRLQQAQKWRDWLAQKDGLDSY
                     RLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAALVSALQTLYPECAIYDRSDVA
                     VRKKEGMELTLGLVTGELPPALLPIEEHGMKLLVDIQHGHKTGYYLDQRDSRLATRRY
                     VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV
                     RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGI
                     LLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGLYLKGFA
                     CRVM"
     gene            26171..26449
                     /gene="yccX"
                     /locus_tag="OQQ19_000391"
     CDS             26171..26449
                     /gene="yccX"
                     /locus_tag="OQQ19_000391"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HCS1802142.1"
                     /translation="MSKVCIIAWVYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSV
                     EVVACGEEGQVEKLMQWLKSGGPRSARVERVLSEPHHPSGELTDFRIR"
     gene            complement(26446..26775)
                     /gene="tusE"
                     /locus_tag="OQQ19_000392"
     CDS             complement(26446..26775)
                     /gene="tusE"
                     /locus_tag="OQQ19_000392"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309080.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusE"
                     /protein_id="HCS1802143.1"
                     /translation="MLIFEGKEIETDTEGYLKESSQWSEPLAVVIAENEGISLSPEHW
                     EVVRFVRDFYLEFNTSPAIRMLVKAMANKFGEEKGNSRYLYRLFPKGPAKQATKIAGL
                     PKPVKCI"
     gene            complement(26866..27525)
                     /gene="yccA"
                     /locus_tag="OQQ19_000393"
     CDS             complement(26866..27525)
                     /gene="yccA"
                     /locus_tag="OQQ19_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000375124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease modulator YccA"
                     /protein_id="HCS1802144.1"
                     /translation="MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTV
                     LMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGM
                     GDVIAMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL
                     HLAISAVFILISSGAILFETSNIVHGGETNYIRATVSLYVSLYNIFVSLLSILGFASR
                     D"
     gene            complement(27732..27819)
                     /locus_tag="OQQ19_000394"
     tRNA            complement(27732..27819)
                     /locus_tag="OQQ19_000394"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(27783..27785),aa:Ser,seq:tga)
     gene            28246..29364
                     /gene="hyaA"
                     /locus_tag="OQQ19_000395"
     CDS             28246..29364
                     /gene="hyaA"
                     /locus_tag="OQQ19_000395"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 1 small subunit"
                     /protein_id="HCS1802145.1"
                     /translation="MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAW
                     ALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAE
                     EVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTC
                     ASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVD
                     RMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS
                     STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGV
                     VAAAVGVHAVASAVDQRRRHNQQPTETEHQPGNEDKQA"
     gene            29361..31154
                     /gene="hyaB"
                     /locus_tag="OQQ19_000396"
     CDS             29361..31154
                     /gene="hyaB"
                     /locus_tag="OQQ19_000396"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase large subunit"
                     /protein_id="HCS1802146.1"
                     /translation="MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVIT
                     NAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDN
                     ANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSP
                     GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVK
                     IHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMI
                     PDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNV
                     LPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQ
                     ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLG
                     RILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAP
                     RGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEI
                     LRTLHSFDPCLACSTHVLGDDGSELISVQVR"
     gene            31173..31880
                     /gene="hyaC"
                     /locus_tag="OQQ19_000397"
     CDS             31173..31880
                     /gene="hyaC"
                     /locus_tag="OQQ19_000397"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase b-type cytochrome subunit"
                     /protein_id="HCS1802147.1"
                     /translation="MQQKSDNVVSHYVFEAPVRIWHWLTVLCMAVLMVTGYFIGKPLP
                     SVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFVGNRYSRELFIVPVWRKSWW
                     QGVWYEIRWYLFLAKRPSADIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHSQYAIF
                     APFRYVVEFFYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALREDIMSDGTVISTMV
                     NGYRSHKFGKISNKECS"
     gene            31877..32464
                     /locus_tag="OQQ19_000398"
     CDS             31877..32464
                     /locus_tag="OQQ19_000398"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 1 maturation protease"
                     /protein_id="HCS1802148.1"
                     /translation="MSEQRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDG
                     GTQGLNLLGYVESASHLLILDAIDYGLEPGTLRTYAGERIPAYLSAKKMSLHQNSFSE
                     VLALADIRGHLPAHIALVGLQPAMLDDYGGSLSELAREQLLAAEQSALAQLAAWGSVP
                     QLANESRCLNYDCLSMENYEGVRLRQYRMTQEEQG"
     gene            32461..32859
                     /gene="hyaE"
                     /locus_tag="OQQ19_000399"
     CDS             32461..32859
                     /gene="hyaE"
                     /locus_tag="OQQ19_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase-1 operon protein HyaE"
                     /protein_id="HCS1802149.1"
                     /translation="MSNDTPFDALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSD
                     PKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGVFRFPTTLVFTGGN
                     YRGVLNGIHPWAELINLMRGLVEPQQERAS"
     gene            32856..33713
                     /locus_tag="OQQ19_000400"
     CDS             32856..33713
                     /locus_tag="OQQ19_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein"
                     /protein_id="HCS1802150.1"
                     /translation="MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCA
                     HSPQVIALLNELQHQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQA
                     DDSKSEIQEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPP
                     IDGLMNGLPLAHELLAHVRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIG
                     YGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVC
                     QWLAEAAPT"
     gene            33847..35391
                     /gene="appC"
                     /locus_tag="OQQ19_000401"
     CDS             33847..35391
                     /gene="appC"
                     /locus_tag="OQQ19_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-II oxidase subunit 1"
                     /protein_id="HCS1802151.1"
                     /translation="MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTG
                     KTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWAFYSNYVGDIFGAPLAMEALM
                     AFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFD
                     IDTLRMEMTSFSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERDVALR
                     SFAIGSVFGTLAIIGTLQLGDSSAYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPE
                     QDQERNAFAIKIPALLGILATHSLDKPVPGLKNLMAETYPRLQRGRMAWLLMQEISQG
                     NREPHVLQAFRELEGDLGYGMLLSRYAPDMNHVTAAQYQAAMRGAIPQVAPVFWSFRI
                     MVGCGSLLLLVMLIALVQTLRGKIDQHRWVLKMALWSLPLPWIAIEAGWFMTEFGRQP
                     WAIQDILPTYSAHSALTTGQLAFSLIMIVGLYTLFLIAEVYLMQKYARLGPSAMQSEQ
                     PTQQQG"
     gene            35403..36539
                     /gene="appB"
                     /locus_tag="OQQ19_000402"
     CDS             35403..36539
                     /gene="appB"
                     /locus_tag="OQQ19_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HCS1802152.1"
                     /translation="MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDD
                     ERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPL
                     AFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGS
                     FWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLSSQLATKRAALLVMLCFLLA
                     GYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPL
                     LTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQL
                     TLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY"
     gene            36552..36644
                     /gene="cbdX"
                     /locus_tag="OQQ19_000403"
     CDS             36552..36644
                     /gene="cbdX"
                     /locus_tag="OQQ19_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-II oxidase subunit CbdX"
                     /protein_id="HCS1802153.1"
                     /translation="MWYLLWFVGILLMCSLSTLVLVWLDPRLKS"
     gene            36724..38022
                     /gene="appA"
                     /locus_tag="OQQ19_000404"
     CDS             36724..38022
                     /gene="appA"
                     /locus_tag="OQQ19_000404"
                     /EC_number="3.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acid phosphatase/4-phytase"
                     /protein_id="HCS1802154.1"
                     /translation="MKAILIPFLSLLIPLTSQSAFAQSEPELKLESVVIVSRHGVRAP
                     TKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYFGHYQRQRLVADGLLAKKGCPQP
                     GQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNA
                     NVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDESCSLTQALPS
                     ELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNAQF
                     YLLQRTPEVARSRATPLLDLIMAALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGG
                     ALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNT
                     PPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL"
     gene            complement(38137..40317)
                     /gene="etk"
                     /locus_tag="OQQ19_000405"
     CDS             complement(38137..40317)
                     /gene="etk"
                     /locus_tag="OQQ19_000405"
                     /EC_number="2.7.10.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein kinase"
                     /protein_id="HCS1802155.1"
                     /translation="MTTKNMNTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLI
                     AVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMIPNSSPESAPEIQLLQSRMILGK
                     TIAELNLRDIVEQKYFPIVGRGWARLTKEKPGELAISWMHIPQLNGQDQQLTLTVGEN
                     GHYTLEGEEFTVNGMVGQRLEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETF
                     TVSERSKESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQL
                     PEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLY
                     KKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNR
                     QQELSISKSSAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLR
                     RGVEAPEQLEEHGISVYATIPMSEWLDKRTRLRKKNLFSNQQRHRTKNIPFLAVDNPA
                     DSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI
                     DADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSEL
                     LMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVS
                     LSMQRLEQAGVNIKGAILNGVIKRASTAYSYGYNYYGYSYSEKE"
     gene            complement(40337..40783)
                     /gene="etp"
                     /locus_tag="OQQ19_000406"
                     /gene_synonym="yccY"
     CDS             complement(40337..40783)
                     /gene="etp"
                     /locus_tag="OQQ19_000406"
                     /gene_synonym="yccY"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-tyrosine-phosphatase Etp"
                     /protein_id="HCS1802156.1"
                     /translation="MAQLKFNSILVVCTGNICRSPIGERLLRKRLPGVKVKSAGVHGL
                     VKHPADATAADVAANHGVSLEGHAGRKLTAEMARNYDLILAMESEHIAQVTAIAPEVR
                     GKTMLFGQWLEQKEIPDPYRKSQDAFEHVYGMLERASQEWAKRLSR"
     gene            complement(40771..41910)
                     /locus_tag="OQQ19_000407"
     CDS             complement(40771..41910)
                     /locus_tag="OQQ19_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HCS1802157.1"
                     /translation="MKKNIFKFSVLTLAVLSLTACTLVPGQNLSTRNKDVIELPDNQY
                     DLDKMVNIYPVTPGLIDQLRAKPIMSQANPELEQQIANYEYRIGIGDVLMVTVWDHPE
                     LTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGKTLTQVRNEITARLDSVIESPQ
                     VDVSVAAFRSQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQN
                     GVKTKVNLYALMQRGDLRQNKLLHPGDILFIPRNDDLKVFVMGEVGKQSTLKMDRSGM
                     TLAEALGNAEGMNQDVADATGIFVIRATQNKQNGKIANIYQLNAKDASAMILGTEFQL
                     EPYDIVYVTTAPLARWNRVISLLVPTISGVHDLTETSRWIQTWPN"
     gene            complement(41956..44052)
                     /locus_tag="OQQ19_000408"
     CDS             complement(41956..44052)
                     /locus_tag="OQQ19_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbH domain-containing protein"
                     /protein_id="HCS1802158.1"
                     /translation="MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQ
                     MPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGD
                     QSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMA
                     WGYAGNAGNITNPFCRVNDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPL
                     RLKLEYDGNNYQNDFAGKLPQASHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTN
                     FNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGFEAPEIQLRDKTLYMS
                     GQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAG
                     TAPGQSEQLQQQRVEAEDLSAFGRGYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGL
                     MSSARYWFTDHLLLDGGIFTNIYNNYDKFKSSLLPADSTLPRVRTHIRDYVRNDVYLN
                     NLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDASWALGVDVNYVKQRDWD
                     NMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKRFDSGVAVG
                     VWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRK
                     YQLYPMTAEREVPVGQ"
     gene            complement(44052..44798)
                     /locus_tag="OQQ19_000409"
     CDS             complement(44052..44798)
                     /locus_tag="OQQ19_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis GfcC family protein"
                     /protein_id="HCS1802159.1"
                     /translation="MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPMEN
                     VVQLVTQPQLRDRLWWPGALLTDSAAKAKALKDYQHVMAQLASWEAEADDDVAATIKS
                     VRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAG
                     QLPWQAGRSVTDYLQDHPRLAGADKNNVMVITPEGETVVAPVALWNKRHVDPPPGSQL
                     WLGFSAHVLPEKYADLNDQIVSVLTQRVPD"
     gene            complement(44795..45439)
                     /gene="gfcB"
                     /locus_tag="OQQ19_000410"
     CDS             complement(44795..45439)
                     /gene="gfcB"
                     /locus_tag="OQQ19_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein GfcB"
                     /protein_id="HCS1802160.1"
                     /translation="MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQI
                     QALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQDNAMLVTHNGRLLKTVKLNNNLL
                     EVTNSGQDPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGRNV
                     LCNVWQEEVTSTRPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP"
     gene            complement(45546..45851)
                     /locus_tag="OQQ19_000411"
     CDS             complement(45546..45851)
                     /locus_tag="OQQ19_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415507.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine-rich inner membrane protein GfcA"
                     /protein_id="HCS1802161.1"
                     /translation="MKHKLSAILMAFMLTTPAAFAAPEATNGTEATTGTTGTTTTTTG
                     ATTTATTTGGVAAGAVGTATVVGVATAVGVATLAVVAANDSGDGGSHNTSTTTSTTR"
     gene            complement(46293..46505)
                     /gene="cspH"
                     /locus_tag="OQQ19_000412"
     CDS             complement(46293..46505)
                     /gene="cspH"
                     /locus_tag="OQQ19_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock-like protein CspH"
                     /protein_id="HCS1802162.1"
                     /translation="MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEV
                     LIPGLRVEFCRVNGLRGPTAANVYLS"
     gene            46791..47003
                     /gene="cspG"
                     /locus_tag="OQQ19_000413"
     CDS             46791..47003
                     /gene="cspG"
                     /locus_tag="OQQ19_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock protein CspG"
                     /protein_id="HCS1802163.1"
                     /translation="MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRT
                     LNENQKVEFSIEQGQRGPAAANVVTL"
     gene            47014..47202
                     /locus_tag="OQQ19_000414"
     CDS             47014..47202
                     /locus_tag="OQQ19_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HCS1802164.1"
                     /translation="MTQHLHFRCPCCHGSQYRTSAFDVTERNPLGAKCIFCKSTMITF
                     DNVTLQIRTDHAPLDFTK"
BASE COUNT        11625 a        11730 c        12414 g        11448 t
ORIGIN      
        1 tagcgatgtg cagtcgggta aagtgaatgc cagcgcgaca tttgtacttc attatgacta
       61 atacgtggaa cagattggcg ctcttgattt tcgccgtttt atcgctgctg gtggcgggtg
      121 aattgcgggc aggagtggtg gtcggcggaa cgcgatttat ctttccggca gacagagaat
      181 cgatatctat tttactgact aataccagtc aggaatcctg gctgattaac agtaaaatca
      241 accgcccaac gcgttgggcc ggggggaaag cgtcgacagt gccagcacca ttactggccg
      301 ctccgccact tattctcctg aagcccggta ctacaggcac gttgcgcttg ctgagaacgg
      361 aaagcgacat cttgcctgtg gatcgcgaaa cgctatttga gttaagcatt gccagcgtgc
      421 catccggcaa agttgaaaat cagagcgtaa aagtggcgat gcgctcggta tttaaactgt
      481 tctggcgacc cgaaggtttg ccgggcgacc cgctggaagc ttatcaacaa ttacgctgga
      541 cacggaattc gcagggtgta caactcacta acccaacgcc ttactacatt aacctgattc
      601 aggtgagcgt aaatggtaaa gcgttaagta atgcgggagt tgtgccgcct aaaagccagc
      661 gtcagacaag ctggtgtcag gcaatcgcac cgtgtcatgt cgcctggcgg gcgataaatg
      721 attacgacgg gttgagtgca aagaaggagc aaaatctgcc ctgaaacagg ttcggaaaac
      781 gtttgcgttt tttttgccgc aggtcaattc ccttttggtc cgaactcgca cataatacgt
      841 ccccggtttg cacaccggga atccaggaga gttcatgtac taccccttcg ttcgtaaagc
      901 ccttttccag ctcgatccag agcgcgctca tgagtttact tttcagcaat tacgccgtat
      961 tacaggaacg ccgtttgaag cactggtgcg gcagaaagtg cctgcgaaac ctgttaactg
     1021 catgggcctg acgtttaaaa atccgcttgg tctggcagcc ggtcttgata aagacgggga
     1081 gtgcattgac gcgttaggcg cgatgggatt tggatcgatc gagatcggta ccgtcacgcc
     1141 acgtccacag ccaggtaatg acaagccgcg tctctttcgt ctggtagatg ccgaaggttt
     1201 gatcaaccgt atgggcttta ataatcttgg cgttgataac ctcgtagaga acgtaaaaaa
     1261 ggcccattat gacggcgtcc tgggtattaa catcggcaaa aataaagata cgccagtgga
     1321 gcagggcaaa gatgactatc tgatttgtat ggaaaaaatc tatgcctatg cgggatatat
     1381 cgccatcaat atttcatcgc cgaatacccc aggattacgc acgctgcaat atggtgaagc
     1441 gctggatgat ctcttaaccg cgattaaaaa taagcaaaat gatttgcaag cgatgcacca
     1501 taaatatgtg ccgatcgcag tgaagatcgc gccggatctt tctgaagaag aattgatcca
     1561 ggttgccgat agtttagttc gccataatat tgatggcgtt attgcaacca ataccacact
     1621 cgatcgttct cttgttcagg gaatgaaaaa ttgcgatcaa accggtggct taagtggtcg
     1681 tccgcttcag ttaaaaagca ccgaaattat tcgccgcttg tcactggaat taaacggtcg
     1741 cttaccgatc atcggtgttg gcggcatcga ctcggttatc gctgcgcgtg aaaagattgc
     1801 tgcgggtgcc tcactggtgc aaatttattc tggttttatt tttaaaggtc cgccgctgat
     1861 taaagaaatc gttacccata tctaattatt tcttcgaatt cctctttata agataatcag
     1921 ggctttattt tcagccctgg ttgttttata ttcatcgctg ttgcttattt agacattttg
     1981 tacttttatt gttgaggtta ttaagcgaag cgacaatgga ttgtgttgct gcggttttat
     2041 agggtagggg agaggcagat gcgaattaaa ccagacgata actggcgttg gtattacgat
     2101 gaagagcacg atcgaatgat gctcgattta gccaatggta tgctatttcg ctcacgtttt
     2161 gcgcgcaaga tgttgactcc agatgccttt tctcccgcag gcttttgcgt tgacgacgcc
     2221 gcgctctatt tctcttttga agaaaagtgc cgcgatttta atttatctaa agaacaaaaa
     2281 gccgaactgg tgctgaatgt actggtagca attcgctatc tcaaaccgca aatgccgaaa
     2341 agctggcatt ttgtttccca tggtgaaatg tgggtgccca tgccgggcga tgcggcctgc
     2401 gtttggttga gcgatactca cgagcaggtc aatttgctgg tcgttgaatc tggcgaaaat
     2461 gccgcactat gcctgctggc acaaccctgc gttgttattg cgggtcgcgc gatgcagttg
     2521 ggcgacgcca ttaaaatcat gaacgacagg ctgaaaccgc aggttaatgt tgacagcttc
     2581 agcctcgaac aggcagtcta acgcgccaac ttaagtgcag tcttcggtac acagctacag
     2641 caaagaatgg tgccatcatc gcccattgct gattttttca gcggcgagac ttcgccttct
     2701 aaaatctgaa cacggcaact tccacaaatg cccgcgcggc aagaataagg gatacgaatt
     2761 ccctgatttt ctaattgctc cagcaacacc tgttggttat ttccacgaaa tgcctgtccc
     2821 tgccagtcaa tatctacatt tgcgtccggt tgttgcgtga tgttggcggt atcatcagcg
     2881 gcagctgcgc cgtaaatttt tgccggagcc gttgccagaa tttccacctc atcgccaacg
     2941 cgaatcacgc cgctattacg ggcaattaaa ttctgaccaa aatcgacatc gccgttatcc
     3001 tgggcagtgc ggaaagattg caatgttttt aatggttcgc ctgccggatg tttttgccct
     3061 ttttctgggc tgacggtggt gaaaatacag cggctacaag gtttaaccac atcaaacacc
     3121 acatcaccaa tgcgaatcac tttccagcga tcttcttccc aggctgacgc gccggaaacc
     3181 accagattgg ggcggaattg ctccattttt acactggccg gacaacgttg ttggagatca
     3241 cgtaacgagg cttcgttagc aagaaggtaa ggatagccat cagcaaatga cagaggtaca
     3301 gtgttgtggc gtttcacgcg ccgggtcatt tgtggcccca cccagcgtaa ttgcacttcg
     3361 cgggagaaaa atccacttag ccatttgttg atcgcgtctg gcgcaattcg cgcggtaaaa
     3421 tgtgtgcccc aaacttcggt tggtgcgtct tgtgtggcga aatcagcaaa acgaacatat
     3481 gcgctactgc catctggtgc ggtgagatgc aagccatcat gcacaggtga aggagtaaac
     3541 cgtaccatct ggggaaactg gcgagcggta ataaacgtac cgtcaggttc cgtgatcata
     3601 aagatgcgat cgaaggccag accactgaca tcagccagag catgtgtaag accaatgccg
     3661 cgcatcgatt taacaggatg aataaaaagc cgggttaatg tcgccacggt gcggtcctca
     3721 aatgaaaata agccctcaac tttatgacat gacgcgctta ttagctataa tgcgcaacaa
     3781 ttttcttagc gcctgtccca ttaggctatt ttatttgtca gtttggccct gggttgtgct
     3841 cgaaatcctc acgtacttgt gtacgctccg gtttctccgc gctgtccatg tccagactga
     3901 ctgcaacaat tacgcctact gcggtaggct cttagagtaa aagtgacgat atgaattctc
     3961 tgtttgccag tacggcccgt gggctggaag agctgttaaa aactgaactg gaaaacctgg
     4021 gggccgttga atgccaggtg gttcagggtg gggtccattt caagggcgac acacggcttg
     4081 tttaccagag cctgatgtgg agccgcctgg cctcgcgtat tatgttgccg ctgggcgagt
     4141 gtaaggttta cagcgattta gacctctatc tcggtgttca ggcgatcaac tggacagaga
     4201 tgtttaatcc tggcgcgacc ttcgctgtcc acttcagtgg tttgaatgac accatccgca
     4261 acagtcagta cggcgcgatg aaagtgaaag acgcgatcgt cgatgctttc acgcggaaaa
     4321 atctgccgcg tccaaatgtt gatcgcgatg cgccggatat ccgcgttaac gtctggctgc
     4381 ataaagaaac cgccagtatc gctcttgatc tgagtggtga tggtttacat ctgcgtggct
     4441 atcgcgatcg tgctggtatt gcgccgatca aagaaaccct ggcagccgct attgtgatgc
     4501 gatccggctg gcagcctgga acaccgctgc tcgatccgat gtgtggttcc ggtacgttgc
     4561 tgattgaagc ggcgatgctg gcgaccgatc gcgcacccgg cttgcaccgt gggcgttggg
     4621 gctttagcgg ctgggcgcag catgatgaag ctatctggca ggaagtgaaa gcggaagcgc
     4681 aaactcgcgc ccgtaaaggc ctggctgagt atagctctca tttttacggt tcggacagcg
     4741 acgcacgggt gattcaacgt gcacgcacta acgcccgtct tgcggggatt ggtgaactga
     4801 tcacctttga ggtgaaagat gtcgcgcaac tgaccaatcc gctgccgaaa gggccgtacg
     4861 gcacagtgtt gagcaacccg ccatacgggg aacgtctgga cagcgaaccg gcgctgattg
     4921 cgctgcatag cctgctgggt cggatcatga aaaaccagtt tggtggctgg aatctctctt
     4981 tgtttagtgc ctcgccggat ctgctaagct gcttgcagct gcgtgcagac aaacagtaca
     5041 aggcgaaaaa cggcccgctg gactgcgtac agaaaaatta ccacgttgcc gaaagcactc
     5101 cagacagcaa accggcgatg gtagcggaag actacgccaa ccgcctgcgt aagaacctca
     5161 aaaaattcga gaagtgggct cgccaggaag gaattgaatg ttaccgcctg tatgacgccg
     5221 atctgccgga atataacgtt gccgttgacc gttattccga ctgggtggtg gtgcaggagt
     5281 atgcaccgcc aaaaactatt gatgctcaca aagcgcgtca gcgtctgttc gatattatcg
     5341 ctgcaaccat ttcggtactg gggattgcgc caaacaaact ggtgctgaaa acccgtgaac
     5401 gccagaaggg caaaaaccag taccagaaac tgggcgagaa gggcgagttt cttgaagtta
     5461 ccgaatataa cgctcacttg tgggtgaacc tgacggatta tctcgatact ggtctgttcc
     5521 tcgatcaccg tatcgcccgc cgtatgctcg gtcagatgag caaaggcaaa gatttcctca
     5581 acctgttctc ttataccggt agcgccaccg tgcatgcggg attaggcggc gcgctcagca
     5641 ccaccaccgt ggatatgtcg cgtacttatc tggagtgggc agaacgcaac ctgcgtctga
     5701 atggcctaac cgggcgtgcg catcgcctga ttcaggccga ttgcctggcg tggctgcgtg
     5761 aggcaaatga acagtttgat ctgatcttta tcgatccgcc aaccttctct aactcaaaac
     5821 gaatggaaga tgcgtttgat gttcagcgcg atcatctggc gctgatgaaa gatttgaaac
     5881 gtctgctgcg tgcaggtggg acgatcatgt tctcgaacaa caaacgtggc ttccgtatgg
     5941 atctcgacgg cctggcaaaa ctgggactga aagcacaaga aattacgcaa aaaacgctct
     6001 cccaggattt cgcccgtaac cgccagatcc acaactgctg gctgattacc gcagcctgaa
     6061 aggaatagta atgtcattaa tcagtatgca tggcgcatgg ctgtcgttca gcgacgcgcc
     6121 gcttctcgat aacgcagaac tgcatatcga agataacgaa cgtgtttgtc tggtgggccg
     6181 caacggcgcg ggcaaatcga cgttaatgaa aatcctcaac cgtgaacaag ggctggatga
     6241 cggtcgcatt atttacgagc aagatttgat tgtagctcgt ctgcaacagg atccgccgcg
     6301 taacgttgag ggtagcgttt atgatttcgt tgccgaaggc attgaagaac aagcggaata
     6361 tctgaaacgc tatcacgata tttcgcgcct ggtgatgaac gacccgagcg agaaaaatct
     6421 caacgaactg gcgaaggttc aggaacagtt ggatcaccac aacctgtggc agctggaaaa
     6481 ccgcatcaac gaagtgctgg cgcaactggg gttagatcct aatgttgcgc tgtcgtcgct
     6541 ttccggcggc tggttgcgta aagcggcatt aggacgcgcg ctggtgagta atccgcgcgt
     6601 gctgttgctt gatgaaccga caaaccacct ggatattgaa accatcgact ggctggaagg
     6661 gttccttaaa accttcaatg ggacgattat tttcatctcc cacgaccgtt cgtttatccg
     6721 caatatggcg acgcgcattg ttgatctcga tcgcggcaag ctggtgacct atccagggaa
     6781 ttacgaccag tacctgcttg aaaaagaaga agccctgcgc gtggaagaac tacaaaatgc
     6841 cgagttcgat cgcaaactgg cgcaggaaga ggtgtggatc cgccagggga tcaaagcacg
     6901 ccgtacccgt aatgaaggcc gcgtacgcgc cctgaaagca atgcgtcgcg agcgtggtga
     6961 acgtcgcgaa gtgatgggta ccgcaaagat gcaggtggaa gaggccagcc gctccggtaa
     7021 gatcgttttc gaaatggaag acgtttgcta ccaggttgac ggtaagcaac tggtgaaaga
     7081 tttttcggcc caggttctac gtggcgacaa aattgtcctg attggtccga atgggtgcgg
     7141 caaaaccacg ctgctgaaac tgatgctcgg tcagcttcaa gcggacagcg ggcgtattca
     7201 cgttggcacc aaactggaag tggcttattt cgatcagcac cgcgcggaac tggatcccga
     7261 taaaacggtg atggataaca ttgccgaagg taagcaagag gtgatggtta acggcaagcc
     7321 acgccacgta ttgagctatt tgcaggactt tctgttccat ccgaaacggg cgatgacgcc
     7381 ggtacgtgcg ctttctggcg gtgagcggaa ccgcttgctg ctggcgcgtt tgttcctcaa
     7441 accaagcaac ttattgattc ttgacgaacc gaccaacgat cttgatgtcg aaacgctgga
     7501 actgctggaa gaactgatcg acagctatca gggcacggta ttgctggtta gccacgatcg
     7561 tcagtttgtc gataacaccg ttacagaatg ttggatcttc gaaggcggcg gtaaaattgg
     7621 tcgttatgtc ggcggttatc atgatgcccg tggtcagcaa gagcagtatg tggcgctcaa
     7681 acagcctgcg gtgaaaaaaa ccgaagaagc cgccgcggca aaagcagaaa ctgtaaaacg
     7741 cagcagtagc aaactaagct ataaattgca gcgcgaactg gagcagctac cgcaattgct
     7801 cgaagatctg gaggcgaagc tggaagccct acagacgcag gtggcggatg cttccttctt
     7861 cagtcagcca catgagcaga cacaaaaagt gctcgccgat atggctgctg cagagcagga
     7921 gctggagcaa gcctttgaac gctgggagta tcttgaagcg ttaaaaaatg gtggctgatc
     7981 gcaaaatagt cgatttaaac agagacagct gacaacggta aaattgcctg atgaactggg
     8041 tttatcaggc atgaaaacca acactttgtt agtcatctgt aaaatagcgc atcattaagg
     8101 agtaccaatg tgcgaacatc atcatgccgc gaagcacatc ctgtgctcgc agtgtgacat
     8161 gctggtggcg ttaccgcgcc ttgagcatgg tcagaaagcg gcatgtcccc ggtgtggcac
     8221 aacgttaacc gtggcgtggg atgcccctcg gcagcgtccg accgcctatg cgttggctgc
     8281 actgttcatg ctgttgctgt ccaacttgtt tccttttgtg aatatgaacg ttgcaggagt
     8341 taccagtgaa attacattac tggaaattcc cggcgtgctt ttttctgagg actacgccag
     8401 cctcggcacc tttttcctgt tgtttgtgca actggttccc gcgttttgtc tgataaccat
     8461 tctgttactg gtgaatcgcg cggaattacc ggtccgttta aaagagcaac tggcacgggt
     8521 gctttttcaa ctcaaaacct ggggaatggc ggagattttc ctcgcgggtg tgctggtcag
     8581 tttcgttaaa ctgatggctt acggcagcat tggggtaggc agcagctttc tcccctggtg
     8641 tttattttgt gtcctgcaac tgcgcgcttt tcagtgcgtt gatcgtcgct ggttatggga
     8701 cgacatcgcc ccgatgccag aactgcgcca gccgctaaaa ccaggcgtca cggggatacg
     8761 tcaggggctg cgttcgtgct cctgttgtac ggcaatcctt cctgctgatg aacccgtgtg
     8821 cccgcgttgt agtaccaaag ggtacgttcg gcgtagaaac agcctgcagt ggacactcgc
     8881 gctgcttgta acgtccatca tgctgtatct tccggctaat attttgccca tcatggtgac
     8941 ggatttatta ggctcgaaga tgccgtcgac gattctcgct ggggtcattc tgttatggag
     9001 cgaaggctct tatcccgtcg ctgcggtgat ctttctggcc agtattatgg tgccaacgtt
     9061 aaagatgatc gccatcgcgt ggctgtgttg ggatgccaaa gggcatggca agcgcgacag
     9121 tgaaagaatg catttgattt atgaagttgt tgagtttgta ggccgctggt cgatgattga
     9181 cgttttcgtt atcgcggtgc tctcggcgct ggtgcgtatg ggaggtttaa tgagtattta
     9241 tccggcaatg ggtgcattaa tgtttgcttt agtcgtcata atgacaatgt tttctgctat
     9301 gacgtttgac ccgcgtttgt cgtgggatcg tcaacctgaa tcagagcatg aggagtcctg
     9361 acagtatgga atctaataat ggggaagcca aaatccagaa agtgaagaac tggtctcccg
     9421 tgtggatatt tcctatcgtc acggcgctca ttggggcctg ggttctattt tatcattaca
     9481 gccatcaggg accggaagtg accctgatca ccgcgaatgc ggaaggaatt gaaggtggca
     9541 aaaccaccat taaaagccgt agcgttgacg tcggcgtggt tgaaagcgcc acactggctg
     9601 atgatttgac gcacgttgaa atcaaagcgc ggctgaattc cggtatggaa aaattgctgc
     9661 ataaagacac cgtcttttgg gtggtgaaac cgcagattgg tcgcgaaggg attagcggcc
     9721 tgggaacgct gctgtctgga gtttatatcg aactgcagcc aggcgcgaaa ggcagcaaaa
     9781 tggataaata cgatttgctg gactcgccac cgttggcccc gcctgatgcg aaaggtatcc
     9841 gtgtgattct cgatagcaaa aaagccgggc agctctcgcc aggagatccg gtgctgttcc
     9901 gtggctatcg ggtaggttcg gttgaaacca gcaccttcga tacgcaaaaa cgcaatatca
     9961 gttatcaact gttcatcaat gcaccttatg accgactggt gaccagcaat gttcgcttct
    10021 ggaaagatag tggcattgcg gttgatctga cgtcagcggg gatgcgtgtg gagatgggct
    10081 cattgacaac gctgcttagt ggcggtgtta gctttgatgt gccggaaggt ctggatttag
    10141 ggcagccagt ggcaccgaaa acagctttcg ttttgtatga tgatcagaag agcattcagg
    10201 attcgttgta caccgatcac attgattatc tgatgttctt taaagattcg gtacgcggtc
    10261 tgcaaccggg agctccggta gaattccggg gtattcgcct gggtaccgta agcaaagtgc
    10321 cattctttgc gccgaatatg cgtcagacat ttaacgatga ttaccgtatt ccggtactga
    10381 ttcgtatcga gccagagcgg ctgaaaatgc agcttggcga aaatacggat gttgttgagc
    10441 accttggcga attgttgaaa cgtggtttac gcggatcgct gaaaaccgga aacctggtca
    10501 ctggtgcact gtatgttgat ctcgatttct atccaaatac gcctgcaata accggtattc
    10561 gtgaatttaa tggttatcag attatcccga ctgttagcgg cggcctggcg caaatccagc
    10621 aacgactgat ggaagcgttg gataagatca acaaactgcc attgaatccg atgattgaac
    10681 aggcaaccag tacgctttct gaaagtcagc gcacaatgaa aaacctgcaa acgacgctgg
    10741 atagcatgaa caagatcctc gctagccagt cgatgcagca gttgccgacg gatatgcagt
    10801 caacgttgcg tgaattgaat cgcagcatgc agggcttcca gcctggctcc gcagcctaca
    10861 acaagatggt ggcggatatg cagcgccttg atcaggtgtt gcgagaactg caaccggtgc
    10921 tgaaaacgct caatgagaag agtaacgcgc tggtatttga agcgaaggac aaaaaagatc
    10981 cagagccgaa gagggcgaaa caatgaaaaa gtggctagtg acgattgcag cactgtggct
    11041 ggccggatgc agctccggcg aaattaataa aaactattac cagttacctg tggtgcagag
    11101 cggtacacaa agtaccgcca gccagggcaa tcgtctgtta tgggtagagc aggtcactgt
    11161 tcctgactat ctggcgggga atggtgtggt ttatcaaacc agtgatgtga agtatgtgat
    11221 tgccaacaac aacttgtggg ccagcccgtt ggatcaacag ttgcgcaaca ccctggttgc
    11281 caacctgagt acgcaactgc ccggctgggt ggttgcctcc cagcctctgg gaagcgtcca
    11341 ggacacgctc aatgttaccg taacggagtt taacggtcgc tatgatggca aggtcattgt
    11401 cagtggtgag tggctgttga accaccaggg acaactgatc aaacgtccgt tccgtctgga
    11461 aggagtgcaa actcaggatg gttacgatga gatggttaaa gtgctggccg gtgtctggag
    11521 tcaggaagcc gcttctattg cacaagagat aaagcgtcta ccttaattat aaagatttgt
    11581 aagtataacc gtctccggta tgttgcctga ggcggttttt ttgtttctaa cgtgcggaaa
    11641 aatttgttcc tcttcacatt ttttgtacaa ccgacatgcc cgtgtagctc acaaatatga
    11701 cagtggcgtg aattttgcgc attgacggca gttatgattc gcggtattgc ttaactgtga
    11761 ttgcacattt agtaatcact gttttctttt ccaccagaaa ccagtatgag ggaaacgagg
    11821 catgaagaga caaaaacgag atcgcctgga acgggcacat caacgtggtt atcaggccgg
    11881 catcgccgga cgctcaaaag aaatgtgtcc ctatcagacg ctgaatcaaa ggtcacaatg
    11941 gctgggaggc tggcgagaag ccatggcgga cagggtagta atggcctgat tctgtctctt
    12001 taaaaagaaa cctccgcatt gcggaggttt cgccttttga tactctgtct gatgataatc
    12061 agaaggcaga cgtatcctgg aacagaccga ctttcaggtc gctggcggta tagatcagac
    12121 gaccatcaac cagcacttcg ccatctgcca gacccataat cagacgacga ttaacaatgc
    12181 gtttaaagtg aatacggtag gtcacttttt tcgctgtcgg cagtacctga ccagtgaatt
    12241 tcacttcgcc aacgcccagc gcgcggcctt taccttcgcc gcccagccag ccgaggtaga
    12301 accctactag ctgccacatt gcgtccaggc ccaggcatcc cggcataacc ggatcgccaa
    12361 tgaagtggca tccgaagaac cacagatccg gattgatatc cagttctgct tcaacatacc
    12421 ctttgtcgaa gttaccaccc gtttcggtca ttttgaccac acggtccatc atcagcatgt
    12481 tcggtgctgg caattgcggg cctttagcgc caaacagttc accgcgacca gaggcaagaa
    12541 ggtcttcttt tgtataggat tcgcgtttat ctaccatgtt ctctgtaagc cttattttat
    12601 tgaagcacgc aggatagcta acacgtgtac gctgaacaag tccgatcagt tcggaataaa
    12661 ccagttcagc caacgtaatg gccatggaaa acggtgacgt ccttcctgtt gcgatgcttg
    12721 cgcgatacgt tcctggatgg tttgcatcag cgtcgtttgg ccttcgccat cccacaccag
    12781 atttaataat aacggcagtg cgtcagtcac atcgtctact gcccagatgg tgaatttgcc
    12841 ttcttctacc gctttcacca gttcactgtg aagacttaaa tggcgaacgt tagctgtggg
    12901 gataatgaca ccttgtttcc cggttaactc acgttgctgg caaatagcaa agaagccttc
    12961 gattttctca tttaaaccac cgaccggctg ggcgcgaccg aactgatcga ctgaacctgt
    13021 gatagcgata ctctgattca ccggcacatc ggcgagggcg cttatcaggg cgcagagttc
    13081 agccatcgag gcactatctc catcaacttc actgtatgac tgctcaaatg tcagcgatgc
    13141 tgagaagggg atctgttgct caagctgtag ttccgacatc aggaacgctt gcatgatcat
    13201 catccctttc gcatggatat tgccgccaag ttccgctttg cgttcgatgt cggtgaattc
    13261 accatcgcca atatgcacaa cgcagctaat gcgagaaggt tcgccaaaag cgcgtggatg
    13321 acccggaaat tcaatgaccg aaagggcgtt aatttgcccg atgcgttcgc cttcggtttc
    13381 aatcaggatt tgctcctgaa ggatctcatc ctgcatacgt tcagcgagga aaccttcgcg
    13441 ccattcacgc tgctgcagca ttaagtttag ctgctcgccg gagaaggtgt cgccatcaca
    13501 cagggaggcg acctctttac actggcggag gatccactgc gggctaagcg gaagtgtttc
    13561 ttgttcaccg gtgtagcgtg ctgcttcgcg gataagtacc ggccaggcat ccgctcccgg
    13621 ggcaggtaag tgattatgtc tggcggtaaa tgtcacccag cgacaccact ggcttactga
    13681 ctccgcatcg acaatctgca gagtatcttc aaattcgcta taaatagcct gctctgaaag
    13741 ctctggctcc atctcctgga aatcagccaa tgattcgcgt tcgcctacca gaatgacttt
    13801 cagcttcaat ggcatcgaag gcacagagac ggggagaggg cgcgactcat caaacgcaac
    13861 ccagtcaaaa cgctcgcggt taacgatatt tttcagccgc atccacagca gaggttgcgc
    13921 cagcagtgta cgcaaagaga tgatgagaat accgccattt gcctgatgca ccagaccagg
    13981 ctgcagggta atgtcgccat taaactggcg caggcagcca aagagttgct ccgcttctac
    14041 ccagtcggca gcgacaactt gcgttaaagt cgcaaaatta tcatctgcac tcactgcgtg
    14101 acgtaagcgg atggagtggc cggaaacctc atagtgatcg cccaccagtt ggcctgcatc
    14161 gctttgtagc gtacgcgcgg catcggcaat aagattcaga tactcagact cttccggggc
    14221 cttagccagc ataaaagagg aggatgctcg cgtatgcagc aactgctcca gcgcaaattg
    14281 cagccgcggt tgagtatcac tgaataaagg atcgttttcg tcaatcaaat gtggctgagc
    14341 aaatatttcc tgatagctat cggtatcagg aaccaggtca cgccatgcaa gtttcgtaat
    14401 ggtcaaagtt gatgtttttt agtctgttgt caaagccgcg attataccgt aaccggcact
    14461 acagcacacg tagaaagcac cgacaatact cctggcatgg gcgttaaagc tcacaggatg
    14521 gagattcttt tcttcactgg cctaaaaagc tgatattctg taaagagtta cacggtaaca
    14581 ttgagatcgc tatgaaatat caacaacttg aaaatcttga aagcggttgg aaatggaagt
    14641 atctggtgaa gaagcatcgc gaaggggagt taattacccg ttacatagaa gccagtgccg
    14701 cccaggaagc cgtcgatgtg ttgctctcgc tggaaaatga acccgtgctg gtaaatggct
    14761 ggattgacaa gcatatgaat ccggaactgg tcaatcgcat gaagcaaacc attcgggcca
    14821 gacggaagcg ccattttaat gcggaacacc agcatacgcg caaaaagtcg atcgatctgg
    14881 aatttattgt ctggcaacgt ctggctggtc ttgcgcagcg tcgcggtaaa acgctttctg
    14941 aaacgattgt tcagctgatt gaagatgcgg aaaacaaaga gaaatacgcg aataaaatgt
    15001 cttctctgaa gctggatctg caggcattgc tgggtaagga ataactgacg aaagtcagtt
    15061 caatttacta aaggcaaaaa aaaccccgca gcagcggggt ttttctacca gacgataact
    15121 taagcctgcg gctgagttac aacgtctttg atacctttaa cttcgatctc tacgcgacga
    15181 tccggagcca ggcagtcgat cagtgcagca cgctgtttca cgttgtcaca ggtgttgcca
    15241 gtaaccgggt tggattcgcc cataccacgt gcggagatct tgtctgccgg gatacctttg
    15301 gagatcaggt aatcaacaac agactgagca cggcgctcgg acagaccctg gttgtaagcg
    15361 tcagaaccga tgcggtcggt gtaacccaga acaactacgg aaccgtcttt cggatccagg
    15421 ttgctcagct ggctgtacag ctgatccaga gcagcctgac cttccggttt cagggttgct
    15481 ttgttgaagt tgaacagaac gtcagacttc agagtgaagt gcttggtctg tacttccggt
    15541 gccggagctg gagccggagc aactactgga gctgcttcgc cctgaccgaa acggtaggaa
    15601 acacccaagc tcagcatgcc gttgtccgga cgagtgccga tggtgtgtgc gtcaccgatg
    15661 ttgttggtcc actggtattc cagacgggta gcgatttcag gagtgatcgc gtactcaaca
    15721 ccgccagcga agaccggaga aacgccggtg tcgtggtttt taccataaac gttggattta
    15781 gtgtctgcac gccataccat accacccaga cgagtgtaga tgtccaggtc gtcagtgatt
    15841 gggtaaccca gtttagcggt cagttgaacg ccctgagctt tgtatgcacc gttttcaacg
    15901 ctgcctttgt acggcatacg acctaaccag tcgtaaccca tttcaaagcc aacatacggg
    15961 ttaacctggt aaccaccaaa agcaccagcg cccagttggt tttcatgggt cgggccattg
    16021 ttgttgatga aaccagtgtc atggtactgg gaccagccca gtttagcacc agtgtaccag
    16081 gtgttatctt tcggagcggc ctgcgctacg gtagcgaaac cagccagtgc cactgcaatc
    16141 gcgatagctg tctttttcat tttttgcgcc tcgttatcat ccaaaatacg ccatgaatat
    16201 ctccaacgag ataacacggt taaatccttc accgggggat ctgctcaata ttaactctac
    16261 cgatatcttc ggcttatgcc gagcacccct ggcgatgtaa agtctacaac gtagttgaaa
    16321 acttacaagt gtgaactccg tcaggcatat gaaaaaaaag tcttgtataa ggtatgttta
    16381 atcttttttg tcagcgacaa tttacagaag aaaatcgcgg aaaccgcttc agacaagcct
    16441 ccgcaaggaa aattagtcac gactgaaagc attggctggg cgacaaaaaa agttccagga
    16501 ttaatcctaa atttacttaa tgatacaaat tagagtgaat ttttagcccg gaaagttgtc
    16561 tcgtggcgtg agaggatgcg cttaccggac gcataataaa ccccatagcg ttaccttcat
    16621 ttgccgcatc aacaagttca gcatgctctt cttcagtcaa atcatctgcc aaccaaccga
    16681 tcaccacact gtaattgccc gtgcgtaaag cgcgaaccat tgactccaca gtgtggcaag
    16741 gggagagctg gctaatctgc attactttcg ttaagggtag cccagatgcc tgaacccatt
    16801 cccgactcag tttttgttgc ggtgttaacc agagttgcca gcgcgattgc tgaccgagtt
    16861 gctgtaacaa tggcaacagt agaagttgcg tcatcatggg ctgatcttcg cgatagacaa
    16921 cttcactgat aagcccggct gtagtgtttt ccgtagagac acgcgcaatt ttacttgctg
    16981 cggatgagaa cgacgaagaa cgatgtgcat agcctgaagt gtacataatc aatccagccc
    17041 ctgtgagtta ctgtatgaat gtacagtaca tccagtgaca acaaagatca accctatttt
    17101 cggaaagagc ctcgcaaatt ttttcgttgg tgacgggaaa acataaatta atcttgcccc
    17161 ttaagaataa gttgcctatt ttcgtagtta acggatccgt taatgtgaat cattctttta
    17221 tgttatgatt ttaaaaggaa ttttatgaaa agcctctcct ataagcggat ctataaatca
    17281 caagaatacc tggcaatgtt gggcacaatt gaataccgat cattgtttgg cagttacagc
    17341 ctgaccgttg acgacacggt gtttgcgatg gtttctgatg gtgagttgta tcttcgggct
    17401 tgtgagcaaa gtgcacagta ctgtgtaaaa catccgcctg tctggctgac atataaaaag
    17461 tgtggccgat ccgttaccct taattactat cgggttgatg aaagtctatg gcgaaatcaa
    17521 ctgaagctgg tgcgtctgtc gaaatattct ctcgatgcag cgctgaaaga gaaaagcacg
    17581 cgcaataccc gggaaagact gaaagatttg cccaatatgt cttttcatct ggaagcgatt
    17641 ctcggggagg tggggattaa ggatgtacgg gcgttacgta tacttggggc aaaaatgtgt
    17701 tggttgcgac tgcggcagca aaacagtctg gtgacagaaa agattctgtt tatgcttgaa
    17761 ggtgccatta tcggcattca tgaagctgcg ctcccggtgg cacgccgcca ggagcttgca
    17821 gaatgggctg actcacttac gccgaaacag gagtttcctg cggaacttga gtaatctggc
    17881 gttgcagacg accaatctca ggcagtaatg caatcaataa tccaacttgt tgtacgacca
    17941 gaggttcttt gctgtctgcc cgtggttcaa gttgctgcat ccgctgtttc aggctagcta
    18001 atgcctcatt gacgcgttct tcatcagcag gttgatgatg taacgcgtca tcaacatagc
    18061 aaactgcgtc atcaagaaac gccagaattt caggattagt taactgctcc cggtgagcac
    18121 cgagggctga gatatagctg gtaaacgtat ggttaaggca cagcaaccga aacgcggctt
    18181 cgcgaatttg cggggtaacg ttcggctcgc tggacatatt tgataccacc gacgccagct
    18241 cagcatcacg gttgtgtgca tcgcggcggg caatacgata cgccagacgg ttatcacgcc
    18301 cctgatggta ttgctccagt atggcatcga gataccgaca gttggcctct gtggcgcgtt
    18361 cgagcatgcg cggcaaattg cgaaactgcc agtcaggcca gatgtagctc actgccgccc
    18421 acgcaatggc acaaccaatc agcgtatcga ttacgcgagg taacgctact tcaaaacctt
    18481 cacccagtaa gttaaaacac agtagcacca aaagtgtgat gaacatcgtt gcatgagcgt
    18541 attgcacgtt acggaaggca aaaaagagca cgccggtaat aaccagcagc accagctgcc
    18601 cttccagtga tggcacaaac cacagcacag gaatgccaat ggcgatacct accagcgtac
    18661 caataatcct taacttcagg cggtggcgcg tggcgttata gtttggctgg cagacaaaca
    18721 aacttgtcag caagatccaa aacccgtgat gcattccggt tatttgaatg atggcgtagc
    18781 cgaagcacaa caccagcgac attcttaccg catgacggaa gagggcggat tccggcgtga
    18841 agtgacggct aagacgcagc cagatatcac tcaacccgtg cgggctgtca tcagcgagct
    18901 cattttcgtc attattatgg ggtagtgcct gggcctgttc tgattcaatt gttgccagtt
    18961 gggcatcaat ggcgcgtaaa ttgttcagca aaaatcccag tgttttgagt aaatcggcgg
    19021 gtgcgccgtt atcgcgcatc cgctccagcg cagcatcaat atgcgtaaaa gcgcgctcaa
    19081 aatgcggatc atgttgataa ggctgacgca acaaaataca gcgtgacagt tgctggcacg
    19141 cctggccctg catcgacatc agccgctgaa aacggaacag cacgtcgctg tggcgaaaat
    19201 gttcacgcaa tgtttgatac tgaatatgag aagagctggc acgctcgtga atatcctgtg
    19261 cgacaaagta ataatgcagc gtgcgacgcg ttccccgttg accacgatcg ccacgtaagc
    19321 gggtcagcag cgagagtttc gtctgattca atgtcgccat cagcagaccg ttggcgagag
    19381 ccaaatcgta cagcggtgcc tggctttcat cttcaatatc aggatcaaac atgcgcgact
    19441 tgagctcaag ataacgcgcc agttgttcat agcaacgcgc caggttgtcc tgcagcgggc
    19501 ggaccgggaa cagcagatga ccaataagtg tcaggacgtt gtaccagacg gcaccggcca
    19561 gcagatacat cggctgctga taccagtgct catacagtga tgttcccaac atagtgtaaa
    19621 tggcgatcag caatgcaccg aaggcaattg ttgcatagcg ttgacccaga ccgccgagca
    19681 aaatgaagcc gctggtagag agcgttaagc caatcgcaaa tagccagggc cagggaaaca
    19741 gcaattctac tgaggccgag gcgataaaaa agcagaacag cgtaatgatg aggttacgca
    19801 aacgtcccgc cagtcggtca tcgagatcgg tcagcgccgc tgccaccatc cccagcgtta
    19861 gcggaatcgt cagttttaca tcacccagcc accacggaaa cgctgtggtt ccacaaagcg
    19921 caataaaaat acgcgcgtaa tacagccagg cgctgttcca ggtatagcgt ttgagcaaag
    19981 gacttagcat aaaggccata ttagtggatt attcaaaacg acgacgtgca ttggcttcac
    20041 gcgcagcttg cgctgtttct accgatacca cgcgacgacc aaccggccat agtgcaatag
    20101 cggcaatttt aaagttcgca atgccgacag gaatgccaat gattgaaata cattgtgcga
    20161 tgcccgttgc aatgtgcatc aggcataacc accagccaaa gaaaatcagc cagaaaatat
    20221 tcaataccgt accgccagta ttcagcagca catttttgcc agccgggttc agttcatcga
    20281 catgaatagc ttcattgcca taaggcacca gagacagttt agtgatctcc cagcaggatc
    20341 gtgtcagcgg taaggtaaaa atcagcacaa tactgaccag agtcgccaac agccagccca
    20401 gagtggtggc aaatccgcca agcacaaagt tcagaatgtt caaaacggta cgcataaaac
    20461 ctcgctttac tgtggttttc agtaatgggc ggcaattgta acgttttttt gggctggagc
    20521 acgttttctc tgacggttac actgataaga aataatttcg tgtggatcta cagagtcatg
    20581 gaactgaaag cgacaacgct tggaaaacgt ctggcacagc acccttacga tcgggcggtg
    20641 atcctcaatg ccgggattaa agtctccggc gatcgccacg aataccttat tcctttcaat
    20701 caattactgg cgattcactg taagcgtggt ctggtatggg gcgagctgga atttgtactg
    20761 ccggacgaaa aagtggtgcg tctgcacggc accgaatggg gcgagacgca gcgtttttac
    20821 catcatcttg atgctcactg gcggcggtgg agtggcgaga tgagcgaaat tgcgtctggt
    20881 gttttacgcc agcaactgga tttgattgcc acgcgcactg gagaaaataa atggctgacg
    20941 cgtgagcaaa cctctggcgt tcagcaacaa atccgccagg ctttgtcggc gttgccgttg
    21001 ccggttaacc gactggaaga attcgataac tgccgtgagg cgtggcgtaa atgtcaggcc
    21061 tggttgaaag atattgaaag cgctcggttg cagcataacc aggcgtatac cgaagccatg
    21121 cttaccgagt atgcggattt tttccgccag gtcgagtctt caccgctgaa tccggcgcag
    21181 gcccgggcag tcgttaatgg cgagcattct ctgttagtgc tggcaggtgc aggaagcgga
    21241 aaaacgtcgg tgctggtggc ccgtgcaggc tggttgctgg cacgtggtga agcgtcccct
    21301 gagcaaattt tattgctggc gtttggtcgc aaagccgctg aagagatgga cgagcggatt
    21361 cgcgaacggc tacataccga agacattacc gcacgcacgt ttcatgcgct ggcgctgcat
    21421 attattcagc agggcagcaa aaaagttccg atagtcagca aactggaaaa tgataccgct
    21481 gcccgtcatg aactctttat tgctgagtgg cgcaagcaat gcagcgaaaa gaaagcgcag
    21541 gcgaagggct ggcggcaatg gctgacggaa gaaatgcagt ggtcagtgcc agaaggtaac
    21601 ttctgggatg atgaaaaatt acagcgtcgc cttgcctctc gcctcgatcg ctgggtaagt
    21661 ctgatgcgga tgcacggtgg tgcacaggca gaaatgattg ccagtgcacc cgaagagatt
    21721 cgcgatctgt tcagtaaacg tatcaagttg atggccccgt tattaaaagc ctggaaaggt
    21781 gcgctgaagg cagaaaacgc tgtcgatttt tcgggcctta ttcatcaggc gattgtgatt
    21841 ctggagaaag gtcgctttat cagcccgtgg aagcatattc tggttgatga atttcaggat
    21901 atctcgccgc agcgggcagc gttgttagcg gcattacgca agcaaaacag tcagacgacg
    21961 ttgttcgctg ttggtgatga ctggcaggcg atttaccgat tcagcggtgc gcaaatgtcg
    22021 ctcaccaccg ctttccatga aaactttggt gaaggcgaac gttgtgattt agacacgact
    22081 taccgtttta acagtcgtat cggtaaggtg gcaaaccgtt ttattcagca gaacccaggc
    22141 cagctgaaaa agccgctaaa cagcttaacc aatggagaca aaaaagccgt cacgttattg
    22201 gatgagagtc aacttgacgc tttgctggat aagctctctg gttatgccaa accggaagag
    22261 cgcattctga tcctggcgcg ttaccatcac atgaggcctg ccagcctgga aaaagcggca
    22321 acacgctggc cgaagttgca aatcgacttt atgaccattc atgccagcaa agggcaacag
    22381 gcggattacg tcatcatcgt tggcttgcag gagggaagtg atggttttcc ggctgcggcg
    22441 cgggagtcga ttatggaaga ggcgctactg ccaccggttg aggatttccc ggacgctgaa
    22501 gaacggcggt taatgtacgt ggcgctgacc cgggcacgcc atcgggtatg ggcactgttt
    22561 aacaaagaga atccctctcc ctttgttgaa atactgaaaa atctggatgt gccggtggcg
    22621 agaaaaccgt aagaaacagg tggcgtttgc cacctgtgca atattacttc agacggtccg
    22681 cgagataacg ctgataatcg gggatcagaa tatcgaccgc gtcgttgaaa tgcggcgact
    22741 ggattatgaa gtctgccgtt gccacgttgg tggcgaccgg aatgttccat accgtcgcca
    22801 gacgcagcaa ggctttcacg tcaggatcgt gcggcacggc atttagtgga tcccagaaga
    22861 aaatcaatac atcaattttc ccttctgaga tcaatgcgcc aacctgctgg tcacccccca
    22921 ttgggccact caacatcgcg ttgacgttca tgccggtcgc gcgggaaatt aagttaccgg
    22981 tagtgcctgt tgcatacagt acgtgttgtt ccagtaacgg ttgatgccgt tccacccagc
    23041 tcatcagcat ttgtttgcag tgatcgtgtg ccaccagcgc aatatgtttc cgcgcaggta
    23101 aagtgcgagt cgtcagttcc ataatgtaca tccgtagtca actttcctac agattactgt
    23161 aagcacttat cgctgcaaga taaagaccga aaaagcctgc gcacaggcac aaaaatctca
    23221 ggaagatggt tgtttttccg cccactgcag gaaagtattt cgcgtttgtg ggtcagccag
    23281 tttaaaccaa tacttcagcc gttgttctgt gagcacctga gactgcggtg gaatagcatc
    23341 cagctcggaa acacccgaaa gcagcgtact gtcatctgcc atcatcgtgg caaattgcgg
    23401 tagtgaagcg cgtttcgcgg atttgttata gcgttcaacc tcgacctcat aatcaatcgt
    23461 ttttgccgtt gaggtaatgg cgagaatatc cagctttacc ggaatcggcg tcgcatcgcc
    23521 atccaacaat tcaaggcgcg gcgcggcatc aaaatggtta gcttcccgct cattctccag
    23581 gcgaggcagg cgaaaattga cctggttgat gagctgggta ttaaaactga ccactagcgg
    23641 tggggagata tacagccgtt cttcactatt ggaaagatga atcgtcttct caacgcgaaa
    23701 cactaactga tgcggtccat tatccagttc aatgctgtcc gcaccgcgca gcagagagct
    23761 ggaaaccttc ttgccgtcga gtaccagaag atcgacatcg gttgaaagcc gcagcgtggt
    23821 ggcaaaaacg gataccggca aacataatgc aatcaaggtg gtcacgatgc cggttttcat
    23881 aggtagctcc tgtcaaaaga ccgcccgaat aataatgtgt caaaattttt ctttaatcat
    23941 acttactaac atatagacat atttcccgct tttgctctca ttcattcgta ttagctgcat
    24001 ggttggcatg tcggctttgt cgtacacttt gttaaacagt ctggaggaaa taatgaaaga
    24061 aaccgatatt gcaggcattt taacgtccac tcacaccatt gcgctggtgg gggcaagcga
    24121 caaacccgat cgtcccagct atcgcgtgat gaaatatcta ctcgaccagg ggtatcatgt
    24181 cattccggtt tcgccaaaag ttgccggcaa aacgctgctg ggccagcagg ggtatggcac
    24241 gctggcagac gttccggaaa aggtcgatat ggtcgatgtt ttccgtaatt cagaagcggc
    24301 gtggggcgtg gcacaggaag ctattgccat tggcgcgaaa accctctgga tgcaactggg
    24361 ggtgattaat gagcaagcgg cagtactggc acgggatgcc gggttgaatg tggtgatgga
    24421 tcgctgcccg gctattgaga tccctcgcct gggcctggcc aaataaaaaa tccccggaag
    24481 gcaaaaacct tccggggatt cgttcaggga tcagttacgc agacgcgggg cctggagttg
    24541 tttgcggatg gtctgcgcca gctcatccat ggatggctgt tcaggatgtt catcctgcaa
    24601 ttcgctactt agctgggctt cagccaggta ggtatgaacc ggtaggccgt tatcgtcctc
    24661 catcactacg tgataccacg gagcggcgcg aagctcgtca tttaccgcca gctcatcagg
    24721 cgacggttca gagagcgaat aaaccgggtc gatatccacg accactccga gataacctaa
    24781 cagggaatgg cggacctgct ggccgatacc gaatttgctg gcaatcatag tcacctcccg
    24841 ggaaatcttt acctttgata taagggtaaa attccacatt tcaagttaca tgacgcgaca
    24901 ggcaaaccct ttcagatata gcccttccgg ataggtagcg atcaccggat gatcggctgc
    24961 ctgacggaac tgctctataa attgtacatc acggccggca tcaattgcgg catccgcgat
    25021 gattttctga aataaatcgc tggtcatcag accggaacag gagaaagtca ggagaatacc
    25081 gccttcattc agcaactgaa tcgccagcat gttgatatct ttatagccac gacacgcgcc
    25141 catcaactgg cttttattct caacaaactt cggcgggtcc atcacgataa cgtcaaattt
    25201 ttcaccgcga tcgcgataag tacgcagcaa tttaaagaca tcatcacgga caaactcagc
    25261 cttgctcaga tccagtttgt tcagctcaac gttctgccgt gcaatatcca gcgcttcctg
    25321 ggaggtatca acgctgacaa cctggctgca accgcccatc agtgccgata cggcgaaacc
    25381 accggtatag gagaaacagt tcagcacacg tttattttca acgtagcggc gggtagccag
    25441 gcggctgtct cgctggtcca ggtagtagcc cgttttgtgt ccgtgctgaa tatccaccag
    25501 cagcttcatg ccgtgttctt caatcggcag cagggcaggc ggcaactcgc cggtgacgag
    25561 gcccagggtc agctccatcc cttctttttt acgtaccgca acatcgctgc gatcgtaaat
    25621 cgcacattcc gggtacagcg tttgcagggc actaactaat gccgcgcgct gatattctgc
    25681 cccagcactc agcagttgca gcaccagaaa attaccgaaa cgatcgatag taatacccgg
    25741 caggccatca gattctccgg cgattaaacg atagctgtcg aggccatctt tttgcgccag
    25801 ccagtcacgc catttttgtg cttgttgcaa acggcgggaa aaaaaagcaa tgtcgataga
    25861 ctcagacggg tcaaacgtcc agacgcgcgc ccggatttgc gaagctggcg aataagcgcc
    25921 gcgtgctaac cattttccct gatgatcaac aatatcgatg gtttcaccga ggctggcttt
    25981 accttccatg cgggcaacgg ccccggaaaa gacccacgga tggcgacgaa gtaatgattt
    26041 ttcgcgccct ttggctaaca ctaaacgtac actcataatt tacttttctg tcgatgcaaa
    26101 gaaatgggcg tcattgtccg gagttttcca tggatttgca acgcgtccat taaggataag
    26161 gagagcagca atgtcgaaag tctgcataat tgcctgggtt tacgggcgag ttcagggcgt
    26221 aggatttcgc tacaccacac agtacgaagc gaaaagactg ggtttaaccg ggtacgccaa
    26281 aaatcttgac gatggcagcg tggaagtggt tgcctgcggt gaagaagggc aggtggaaaa
    26341 attaatgcag tggttaaaga gtggcggccc gcgttctgcg cgtgtagaac gggtgctcag
    26401 cgagccgcat catccctcgg gggaattaac cgattttcgt atccgttaaa tacattttac
    26461 cggttttggc aggccagcaa ttttggtggc ttgcttagcc ggacctttcg gaaacagtcg
    26521 gtataaatag cggctgttac ctttttcttc gccaaattta ttcgccatcg cttttaccag
    26581 catacgaatc gccggagaag tattgaattc cagatagaaa tcacgcacaa aacgcaccac
    26641 ttcccagtgt tccggtgaca gcgaaatccc ttcgttctct gcaatcacca ctgccagcgg
    26701 ctcactccac tggctgcttt ctttgagata gccttcggta tccgtttcta tctctttacc
    26761 ttcgaagatc agcataatta ttactacctt aatcagactg gcggcagtgt aacaaaaaac
    26821 aaagccccgc ataaagcgag gctatgaaag tgttagcggg tgagattaat cgcggctggc
    26881 gaagcccaga atgctcagca ggctgacgaa gatgttgtac agcgaaacat acaggctaac
    26941 cgtggcacga atatagttcg tttcaccgcc atgaacgatg ttgctggttt caaacaaaat
    27001 agcgccagag gagatcaaaa tgaagaccgc actgatcgcc agatgcagag caggcagctg
    27061 caggaagata ttagcaacca taccaatcag caccaccaca atacccgcca tcagcatacc
    27121 gccgaggaac gacatatctt tgcgggtggt cagcacatat gcagagcagc agaagaacac
    27181 taacgccgtt ccgcccagag ccatagcgat tacgtccccc attccggcag acagataggt
    27241 gttcagaata ggtccgagga tataacccag aaaaccggta aaggcgaatg cggagataat
    27301 cccggtcggc ttattcgccg ttttataggt caggaacatc aaaccataca tacccaccag
    27361 cgtcagaatc agacccggag atggcagcat cagcaccgta ctggcagttg cggtaatcgc
    27421 cgaaaaggcc agcgtcaggc tcagcagaaa ataggtatta cgcagcacct tatgggtgct
    27481 aagcagtgat gtacggtcat gtgaagaact aacaatacga tccattgagt cactctctat
    27541 gacagatgta attaattaag cagcataatg ataatgcgta agggcaccca gaagttttac
    27601 ccatctttac gcatttgatc tggaacaggt ttaacagcgg attatcaggt cattaagcaa
    27661 atataacgcc ctgagaattt cgacaggcaa aagaaaaagg ggttagcatt tagctaaccc
    27721 cttatcttat ttggcggaag cgcagagatt cgaactctgg aaccctttcg ggtcgccggt
    27781 tttcaagacc ggtgccttca accgctcggc cacacttccg gaatgacgcg cactataaac
    27841 atcccgatgc ggcgtgtaaa cccctaattt gtttgtttgc ctgaaaaaca gccaaaagtg
    27901 cattgatagc gtgaaataac agcagattga tcatttcatc accatgaatt ccttctcttt
    27961 tactcgttta gcaaccggct aaacatcccc accgcccggc aaaaagaaaa ataggtccat
    28021 ttttatcgct aaaagataaa tccacacagt ttgtattgtt ttgtgcaaaa gtttcactac
    28081 gctttattaa caatactttc tggcgacgtg cgccagtgca gaaggatgag ctttcgtttt
    28141 cagcatctca cgtgaagcga tggtttgcct tgctacaggg acgtcgcttg ccgaccataa
    28201 gcgcccggtg tcctgccggt gtcgcaagga gaagagacgt gcgatatgaa taacgaggaa
    28261 acattttacc aggccatgcg gcgtcagggc gttacccggc gcagctttct caaatattgt
    28321 agtctggctg ccacgtcgct gggattaggc gcgggaatgg caccaaagat tgcctgggcg
    28381 ctggagaaca aaccccgcat tccggtggta tggatccacg gtctggaatg cacctgctgt
    28441 accgaatctt ttatccgctc cgctcaccca ctggcgaagg acgtcatcct ttccctgatt
    28501 tccctcgatt atgacgatac tttgatggct gccgccggaa cccaggcgga agaagtcttc
    28561 gaagacatca tcacgcaata caatggcaaa tatatcctcg cagtagaagg taatccgccg
    28621 ctgggcgagc aggggatgtt ctgtatcagc agcggtcgac cgtttattga gaaactcaaa
    28681 cgtgccgctg ccggagccag cgcgattatc gcctggggaa cctgcgcgtc ctggggctgc
    28741 gtgcaggccg cgcggcccaa tccgacgcag gcaacgccta tcgacaaagt catcaccgac
    28801 aaacccatta tcaaagtacc tggctgcccg ccgatcccgg atgtgatgag cgccatcatt
    28861 acttacatgg tgacctttga tcgcttgcca gatgtcgaca gaatgggccg tccgctgatg
    28921 ttctatggtc agcgaatcca cgataaatgc tatcgccgcg cccacttcga cgccggagag
    28981 ttcgtccaga gttgggatga tgacgctgcc cgcaaaggtt actgcctgta caaaatgggc
    29041 tgcaaagggc ctaccaccta taacgcctgt tcctccacac gctggaatga tggcgtttct
    29101 ttcccaatcc agtctggtca cggctgcctg ggctgtgcgg aaaatggttt ctgggatcgc
    29161 ggttcgttct acagccgcgt ggtcgatatt ccgcaaatgg gtactcattc caccgccgat
    29221 accgtcggtt taaccgcgct tggcgtggtg gcagcggctg ttggtgtgca cgcagtcgcc
    29281 agcgccgttg accagcgcag acgtcataac cagcaaccta cagaaaccga acatcagcca
    29341 ggcaatgagg ataaacaggc atgagcactc agtacgaaac tcagggatac accatcaata
    29401 atgccggacg ccgcctggtg gtcgacccga ttacgcgcat cgaaggccac atgcgctgcg
    29461 aagtgaatat taacgatcag aatgtgatca ccaatgccgt ctcctgcggc accatgtttc
    29521 gcgggctgga gatcatccta caagggcgcg acccgcgcga tgcgtgggcg ttcgttgaac
    29581 gtatctgcgg cgtctgtact ggcgtacacg ccctggcttc ggtttacgcc atcgaagatg
    29641 ctatcggtat taaagtgccg gacaacgcca atatcatccg caacattatg ctggcaacgc
    29701 tctggtgcca cgatcatctg gtgcacttct atcagcttgc cgggatggac tggatcgatg
    29761 tgttagatgc gctgaaagcc gacccgcgga aaacctccga actggcgcaa agtctctcct
    29821 cttggccgaa atcatcccct ggctatttct tcgacgtaca aaaccgcctg aaaaaatttg
    29881 ttgaaggcgg gcagttgggg atcttccgca atggctactg ggggcacccg cagtacaaac
    29941 tgccgccaga agctaacctg atgggctttg cccactatct cgaagctctc gatttccagc
    30001 gtgaaattgt caaaatccac gcggtctttg gcggtaaaaa cccgcatcca aactggattg
    30061 tcggcgggat gccttgcgcc atcaacattg acgaaagcgg cgcggtcggg gcagtcaata
    30121 tggaacgcct gaacctggtg cagtcaatta tcacccgcac ggcggacttc attaacaacg
    30181 tgatgatccc cgacgcctta gccatcggtc agttcaacaa accgtggagc gaaatcggca
    30241 ctggtctttc tgataaatgc gttctcagct acggcgcatt cccggatatt gccaacgact
    30301 ttggcgagaa aagtctgctg atgcctggcg gcgcggtgat taacggcgac ttcaacaatg
    30361 tgctgccagt ggatttggtt gatccgcagc aggtgcagga gtttgtcgac cacgcctggt
    30421 atcgatatcc caacgatcag gtcgggcgtc atccgttcga tggcatcacc gacccgtggt
    30481 acaaccccgg cgatgtcaaa ggcagcgata ccaacattca gcagctgaat gaacaggaac
    30541 gctactcgtg gatcaaagcg ccacgctggc gcggtaacgc gatggaagtg gggccgctgg
    30601 cgcgcacgtt aatcgcttat cacaaaggcg atgctgcgac cgttgagtcg gtcgatcgca
    30661 tgatgtcggc gttgaacctg ccgctttccg gtatccagtc aacgttaggc cgcattttgt
    30721 gccgcgcgca cgaagcgcag tgggccgcag gtaagttgca gtatttcttc gacaagctga
    30781 tgaccaacct gaaaaacggc aatctcgcca ctgcttccac ggaaaaatgg gaacctgcaa
    30841 cctggccgac agagtgccgt ggtgtcggtt ttaccgaagc gccgcgcggg gcgttaggcc
    30901 actgggccgc cattcgcgat ggcaagattg atctctacca gtgcgtggtg ccgaccacct
    30961 ggaacgccag cccgcgcgat cccaaagggc agattggcgc ttatgaagcg gcgctgatga
    31021 acaccaaaat ggcgatcccc gagcaaccgc tggagatcct gcgtactctg cacagctttg
    31081 acccgtgcct cgcctgttca acacacgtgc tgggcgacga cggtagcgag ctgatctccg
    31141 tgcaggtgcg ttaacagcga aggagaatca tcatgcaaca gaaaagcgac aacgttgtca
    31201 gccactatgt ctttgaagcg ccagtccgca tctggcactg gttgacggtg ttatgcatgg
    31261 cggtgttgat ggtcaccgga tactttatcg gcaagccgct accttccgtc agcggcgagg
    31321 cgacgtatct gttctatatg ggctacatca ggttaattca cttcagcgcc gggatggttt
    31381 ttaccgtggt tttgctgatg cggatctact gggcttttgt tggcaatcga tactcccgcg
    31441 agctgtttat cgtgccggta tggcgtaaaa gctggtggca gggcgtgtgg tatgaaatcc
    31501 gctggtatct gtttctggca aaacgtccga gtgccgatat aggccataat cccatcgccc
    31561 aggcggcgat gttcggctat ttcctgatgt cggtctttat gatcatcact ggttttgcgc
    31621 tgtacagcga acacagccag tacgctattt ttgcgccgtt ccgttatgtg gtggaatttt
    31681 tctactggac gggtggcaac tcaatggaca ttcacagctg gcatcggctg gggatgtggc
    31741 tgattggcgc gtttgtgatc ggtcatgtct acatggcgct gcgtgaagac atcatgtccg
    31801 acggcacggt gatctccacc atggtcaacg gctaccgtag ccacaaattt ggcaaaataa
    31861 gtaacaagga gtgttcatga gcgagcaacg cgtggtggtc atggggctgg gcaacctgct
    31921 gtgggccgat gaaggcttcg gcgtgcgggt ggcggaacgg ctgtatgccc attaccactg
    31981 gcccgagtat gtggagattg tcgatggcgg tactcaggga ctgaacttgc tggggtatgt
    32041 cgaaagcgcc agccatctgt tgattctcga tgccattgac tacgggctgg aacctggaac
    32101 gctgcgaacc tatgccggag aacgcattcc ggcttatctc agcgcgaaga aaatgagcct
    32161 gcatcagaac agtttctccg aagtgctggc gctggcagat atccgcggac atctgccagc
    32221 acatattgcc ctcgtcgggc tgcaacccgc gatgctcgac gactacggcg gcagcctgag
    32281 cgaactggca cgggagcaac tgctcgctgc ggaacaatcg gcgctggcgc agttggctgc
    32341 gtggggaagt gtgccgcaac tggctaatga atcgcgttgt ctcaattatg actgtctgtc
    32401 gatggaaaat tacgaaggcg ttcgcttgcg ccagtaccgg atgacacagg aggagcaggg
    32461 atgagcaacg acacgccatt tgatgcgttg tggcaacgaa tgctggcgcg cggctggacg
    32521 ccggtcagtg aatcccgtct tgacgactgg cttacgcaag cgccagacgg cgtggtgtta
    32581 ttaagcagtg acccgaaacg cacgccagag gtcagcgata atccggtaat gattggcgaa
    32641 ttactgcacg agtttcccga ctatacatgg caggtggcga ttgctgacct tgagcagagc
    32701 gaagccatcg gcgatcgctt tggcgtcttt cgctttccta ccactttagt gtttaccggc
    32761 ggaaactatc gcggcgtgct gaatggtatt cacccgtggg cggaactgat aaacctgatg
    32821 cgcgggcttg tcgaaccgca gcaggagcgt gcctcatgag cgaaactttt ttccatctgc
    32881 tggggccagg aacgcaaccg aacgatgaca gtttcagcat gaatccactg ccgatcacct
    32941 gtcaggtgaa tgatgaaccg agtatggcgg ccctggagca atgtgctcac agcccgcagg
    33001 tgattgcgct gttaaacgag ttacaacatc aactaagcga acgccagccg ccgttgggcg
    33061 aggtgctggc agtcgatctg ttaaatctca acgccgacga tcgtcacttt atcaatacgc
    33121 ttctcgggga aggggaagtg tcagtgcgca ttcagcaggc tgacgacagt aaaagtgaaa
    33181 tacaggaggc gatcttctgc ggattatggc gggtgcgcag acgtcgcggc gaaaagttgc
    33241 tggaggacaa actggaggct ggctgcgcgc cgctggcgtt gtggcaggcg gcaacgcaaa
    33301 atctcttgcc gacagattcg ctgttaccgc cgcccattga tggcctgatg aatggcctac
    33361 cgttggcgca tgagttactg gcacatgtac gtaaccccga cgcgcagccg cacagcatta
    33421 atctgacgca attacccatc agcgaggctg atcggctttt tctctcacgt ctctgtgggc
    33481 cgggaaatat tcagattcgt accattggct atggcgagag ctatatcaac gccacggggt
    33541 tacgccatgt ctggcattta cgctgtacgg acaccttaaa aggcccgtta ctggaaagtt
    33601 atgaaatctg cccaataccg gaagtggtgc tggcagcgcc agaagatttg gtcgactctg
    33661 cgcagcggct tagcgaggta tgtcagtggc tggcggaagc tgcaccgacg taaaaagacg
    33721 gtaagtatcg ctttcagtct tatgaatatc gcaatcggcg aatacctctg gtcgtagagt
    33781 ttcaggataa agagggagat ctaacattat cgggttattt ttctctcttc gcctacagga
    33841 gtgcgcatgt gggatgtcat tgatttatcg cgctggcagt ttgctctgac cgcgctgtat
    33901 cactttttat ttgtacccct taccctgggg ctgatttttt tgctggctat catggaaacc
    33961 atttacgtgg tcaccggcaa aacaatctac cgcgatatga cgcgcttctg gggtaagctc
    34021 ttcggtatca attttgctct tggcgtggct accggcctga ccatggagtt tcagtttggt
    34081 actaactggg cattctattc caactatgtg ggcgatattt ttggcgcacc gctggcgatg
    34141 gaagcattaa tggccttctt cctcgaatcc acctttgtcg ggcttttctt cttcggctgg
    34201 cagcggctga ataaatacca gcacctgctg gtgacgtggc tggtggcgtt cggttcaaat
    34261 ctctctgcat tgtggatatt gaatgccaac ggttggatgc aatacccgac cggtgcgcat
    34321 tttgatatcg acaccctacg tatggagatg accagcttca gcgagctggt ctttaacccg
    34381 gtcagccagg tgaaatttgt gcacaccgta atggcgggct acgtgaccgg ggccatgttt
    34441 attatggcga tcagcgcctg gtatttactg cgcggacggg agcgcgatgt tgcattacgc
    34501 tcgtttgcca tcggttccgt cttcggtact ctggcgatta tcggcacgct acaactcggg
    34561 gacagttctg cgtatgaagt cgcgcaagta caaccggtaa aactggcggc gatggaaggg
    34621 gagtggcaaa cggaacctgc tcctgcaccg ttccatgtgg ttgcctggcc ggaacaggat
    34681 caagagcgta acgcctttgc catcaaaatt cccgcgctgt tagggatcct cgccactcac
    34741 tcattagata aacccgtgcc gggtctgaag aatttgatgg ctgaaaccta cccacgcttg
    34801 caacgcggac gtatggcctg gctgttaatg caggaaatat cgcaaggcaa tcgtgagccg
    34861 catgtgttgc aggcattccg ggaactggaa ggtgacctgg gctacggcat gttgctctcc
    34921 cgctatgcgc cggatatgaa tcatgtcaca gccgcacagt accaggcggc gatgcgtggc
    34981 gcgatacctc aggttgcgcc ggtattctgg agtttccgca tcatggtggg ctgtggttcc
    35041 ctgctgctac tggtgatgct gattgcgctt gtccagacgc tgcgtggcaa aatcgaccag
    35101 catcgctggg tgctgaaaat ggcgctctgg agtttgccgt tgccgtggat tgcgattgaa
    35161 gccgggtggt ttatgaccga gtttggtcgt cagccgtggg cgatacagga catcttaccg
    35221 acatactccg cgcactccgc tttaaccaca ggacaactgg ctttctcact gatcatgatc
    35281 gtagggcttt acaccctgtt cttaatcgcc gaagtctacc tgatgcagaa atatgcccgt
    35341 ctggggccga gcgcgatgca gagtgaacaa ccgacgcagc aacaggggta aagaagaaaa
    35401 tcatgtttga ttatgaaaca ttgcgcttca tctggtggct gctgattggc gtgatcctgg
    35461 tggtctttat gatctccgac ggatttgaca tggggatcgg ctgtctgctg ccgctggtgg
    35521 cgcgtaatga tgatgaacgc cggatagtga taaacagcgt tggtgcacac tgggaaggca
    35581 accaggtctg gttgatcctc gctggtgggg cattatttgc cgcctggccc agagtgtatg
    35641 cagcggcgtt ttccggcttt tatgtggcga tgatcctggt gctgtgctca ctgttcttcc
    35701 gcccgctggc ctttgattat cgcggaaaaa tcgccgatgc acgctggcgt aaaatgtggg
    35761 acgccggtct ggtcatcggc agtctggtgc cgccggtagt cttcggtatc gccttcggca
    35821 acttgttgct cggcgtgccg tttgccttca caccgcaatt acgcgtggag tatctcggca
    35881 gcttctggca actgctgacg ccattccctt tattgtgcgg attgctcagc cttgggatgg
    35941 taattttgca aggtggcgtc tggttacaac tgaaaactgt tggtgtgatt catctgagtt
    36001 cacagctggc caccaaacgc gctgcactgt tggtgatgct gtgctttttg ctggcgggtt
    36061 actggctgtg ggtcggtatt gatggctttg tactgctcgc ccaggatgct aacggtcctt
    36121 ccaatccgtt aatgaaactg gtggcagtgc tacctggtgc ctggatgaat aatttcgtcg
    36181 aatcgcccgt tttgtggatc ttcccgctgc tggggttctt ctgcccattg ctgacggtga
    36241 tggcgattta tcgtggtcgc ccaggttggg gatttttaat ggcgtcattg atgcaatttg
    36301 gcgtgatttt cacggcaggc atcacgctgt tccccttcgt catgccgtca agcgtgagtc
    36361 cgatctccag cctgacgttg tgggacagca cttccagcca gctgacgctg agcattatgt
    36421 tggtaatcgt gctgatattt ttgcccattg tgttgctcta cactctctgg agctactaca
    36481 aaatgtgggg gcgcatgaca acagaaactc tccgccgtaa cgaaaacgag ttgtactaag
    36541 gagcaggaac aatgtggtat ttactttggt tcgtcggcat tttgttgatg tgttcgctct
    36601 ccacccttgt gttggtatgg ctggacccgc gtctgaaaag ttaacgaacg taggcctgat
    36661 gcggcgcatt agcatcgcat caggcaatca ataatgtcag atatgaaaag cggaaacata
    36721 tcgatgaaag cgatcttaat cccattttta tctcttctga ttccgttaac ctcgcaatct
    36781 gcattcgctc agagtgagcc ggagctgaag ctggaaagtg tggtgattgt cagtcgtcat
    36841 ggtgtgcgtg ctccaaccaa ggccacgcaa ctgatgcagg atgtcacccc agacgcatgg
    36901 ccaacctggc cggtaaaact gggttggctg acaccgcgcg gtggtgagct aatcgcctat
    36961 ttcggacatt accaacgcca gcgtctggtg gccgacggat tgctggcaaa aaagggctgt
    37021 ccgcagcctg gtcaggtcgc gattattgct gatgtcgacg agcgtacccg taaaacaggc
    37081 gaagccttcg ccgccgggct ggcacctgac tgtgcaataa ccgtacatac ccaggcagat
    37141 acgtccagtc ccgatccgtt atttaatcct ctaaaaactg gcgtttgcca actggataat
    37201 gcgaacgtga ctgacgcgat cctcagcagg gcaggagggt caattgctga ctttaccggg
    37261 catcggcaaa cggcgtttcg cgaactggaa cgggtgctta attttccgca atcaaacttg
    37321 tgccttaaac gtgagaaaca ggacgaaagc tgttcattaa cgcaggcatt accatcggaa
    37381 ctcaaggtga gcgccgacaa tgtctcatta accggtgcgg taagcctcgc atcaatgctg
    37441 acggagatat ttctcctgca acaagcacag ggaatgccag agccggggtg gggaaggatc
    37501 accgattcac accagtggaa caccttgcta agtttgcata acgcgcaatt ttatttgcta
    37561 caacgcacgc cagaggttgc ccgcagccgc gccaccccgt tattggattt gatcatggca
    37621 gcgttgacgc cccatccacc gcaaaaacag gcgtatggtg tgacattacc cacttcagta
    37681 ctgtttattg ccggacacga tactaatctg gcaaatctcg gcggcgcact ggagctcaac
    37741 tggacgcttc ccggtcagcc ggataacacg ccgccaggtg gtgaactggt gtttgaacgc
    37801 tggcgtcggc taagcgataa cagccagtgg attcaggttt cgctggtctt ccagacttta
    37861 cagcagatgc gtgataaaac gccgctgtca ttaaatacgc cgcccggaga ggtgaaactg
    37921 accctggcag gatgtgaaga gcgaaatgcg cagggcatgt gttcgttggc aggttttacg
    37981 caaatcgtga atgaagcacg cataccggcg tgcagtttgt aatgcataaa aaagagcatt
    38041 cagttacctg aatgctctga ggctgatgac aaacgaagaa ctgtctaatg cgtagaccgg
    38101 aaaaggcgtt cacgccgcat ccggccactt tcagttttac tctttctcgg agtaactata
    38161 accgtaatag ttatagccgt aactgtaagc ggtgctggcg cgtttaatca caccattgag
    38221 gatagcgcct ttaatattga cgcctgcctg ttccaggcgc tgcattgaca aactcacctc
    38281 tttggcggtg ttcaagccaa aacgcgcaac cagcaggctg gtgccaacag aacgccccac
    38341 gaccgcggca tcactcaccg ccagcatcgg cggcgtatcg acaatcacca gatcgtaatg
    38401 gtcgttcgcc cattccagta attgacgcat ccgatcgcgc atcagcagtt cagacgggtt
    38461 aggtggcacc tgaccgcgag taatcacatc aaagcctcct ttgccaaaat gctggatcac
    38521 tttgttgagc tcatctttac ctgccagata ttccgacaag ccatgttcat tactcacggt
    38581 aaacaggtta tgcgaataac cacggcgtaa gtcggcatca ataaataaca ctttttgatc
    38641 ggactgggcg atcaccgctg ccagagttga actgacaaac gttttaccac tgtctggcgt
    38701 cgcaccggtg atcatcagaa tgttattctc cgtctccatc atagcgaagt gcagactggt
    38761 tcgtagcgca cgtacggctt ccacagcaga atccgccggg ttatccaccg ccaggaaggg
    38821 gatattttta gtacgatggc gctgctgatt agaaaataaa tttttcttac gcagacgggt
    38881 acgtttatcc agccactcgg acattgggat agtggcataa acgctgatgc cgtgctcttc
    38941 cagttgttcc ggggcttcta caccacgacg caacatcgca cgcgccagca cggcacccac
    39001 cgaaataaac aggccaagaa taaaaccaag caccacgttc aacgcttttt tcggtttcac
    39061 tggctgcggc tgagtgactg ctgggtcgat aatccgcacg ttaccaatgg cactggattt
    39121 cgaaatactc aactcctgct ggcggttaag taattgcaga tataccgcac ggcccgcttc
    39181 tacgtcacgg cttaaacgta acacttcctg ttgagtggaa ggcattgccg atacccgctt
    39241 attcaggcgt ttgcgttctt gctccagcgt ctggcgtttt tccagcagcg cacgataagt
    39301 tgggtgatct ttcttataca gctgggagat ctctgcctcg cggaaagtca gctcattgag
    39361 ttgattatca acgttcacaa tctgctcaag aacggctttg gcttctaggt taaggtcaac
    39421 cgaatcgcgc tgctggcgat aaacgttgag tttttcttcc gcctggtcca gctcgctgcg
    39481 cacttcaggc aactggcgct gtaagaattc aaggctttgt gaatcctgcg ccgcctggcg
    39541 agcgatattc tgttgcaaat agttgttagc gatgctgttc agaatacgag taatcaactg
    39601 gggatcatca ccagtcatgg taagttccag catcccgctt tctttactgc gttcgctaac
    39661 ggtaaaggtt tcctgcaatg cgttaatcgc ttccagttcg gtacgctggc tcaggacaaa
    39721 ctgtgttcct ggtttggcct taatgtccgc gatagtcagc gcaacgccat ctttttccag
    39781 acgctggccg accataccat tgacggtgaa ctcttcacct tccagtgtat agtggccgtt
    39841 ttccccaacc gtgagtgtca gttgctgatc ctgaccattc agttgtggaa tatgcatcca
    39901 gctgatcgcc agctcacctg gtttttcttt ggttaatctc gcccagccgc gacccacaat
    39961 cggaaaatac ttctgctcaa ctatgtcgcg cagattcagt tcagcaatgg ttttaccgag
    40021 aatcatgcgc gattgcagca gttggatctc cggtgcagac tcgggcgatg agttagggat
    40081 catatcgctc aggccgctga gaatggcgtt gccctgtttt tgctcaacct ggaccagagt
    40141 atctgcctga taaattggtg tgcttaacag cgagtaagcg acagcgatca gcgtgaataa
    40201 cgcggttacg ctgataataa acttacggtg atcccataac tcgccgacca gacgaagcag
    40261 atcgatctca ttttcctgag tgctgcctgg tggcgtattc atatttttag ttgtcatcgt
    40321 attttataaa ctcaaattac cggctgaggc gcttcgccca ttcctgactg gcgcgctcca
    40381 acataccgta gacatgttca aatgcgtcct gacttttacg atagggatcc gggatctctt
    40441 tctgttccag ccattgccca aacagcattg tcttcccgcg gacctcggga gcgattgcgg
    40501 taacctgagc aatatgctct gactccattg ccagaatcag atcgtaattt cgtgccatct
    40561 cagcagtgag cttacgtccg gcatgtcctt caagagatac gccatgatta gcggcaacat
    40621 ctgctgctgt cgcatctgca gggtgtttta ccagaccatg aacacctgcc gatttgactt
    40681 ttacgcctgg cagacgttta cgcagcaagc gctcgccaat gggcgaacgg caaatgttgc
    40741 cggtacaaac caccaggatg gagttaaatt ttagttgggc catgtttgaa tccaccgtga
    40801 agtctctgtc aggtcatgca ccccggaaat cgtcggtacc agcagagaaa tcacacggtt
    40861 ccaacgagcc agcggcgcgg tagtgacata aacaatgtcg taaggttcaa gctggaattc
    40921 cgttccgagt atcattgccg atgcgtcctt cgcattcagc tgataaatat tggcgatttt
    40981 gccattctgc ttgttttgcg ttgcacgaat aacaaaaatc cccgtcgcat cagcgacatc
    41041 ctgattcata ccctcagcgt tacccagcgc ttccgccagg gtcataccgc tgcggtccat
    41101 tttcagcgtg ctctgtttac ccacttcacc catcacgaag actttcagat catcgttgcg
    41161 cggaataaat aaaatatcgc ccgggtgcag cagtttgttc tggcgcaagt cgccacgctg
    41221 catcagcgca tagaggttca ctttggtctt tacgccattc tgggtgagca ccacgttgcg
    41281 ccagtctgca tctgcggtca gaccgcccgc ggcgttaatc gcatccatga tggtcagagg
    41341 aatattggta atcggctgct gacccgattt gctgacttcg ccggtgacgt acgctttttg
    41401 cgatcggaac gccgcgacgc tgacatcgac ttgcgggctt tcaatgactg aatcgagacg
    41461 cgctgtaatc tcgttgcgta cttgggtaag tgttttcccg gccactttca ggcgaccaat
    41521 ataggggtag aaaatcgcac catcggcgtt aacccagttg ccggtatcac tggcgctacg
    41581 gtattgccct gcgggggtgg ttagttccgg gtgatcccag accgtaacca tcaacacatc
    41641 accaatcccg atacgatatt catagtttgc gatttgctgc tccagctccg ggttagcctg
    41701 cgacataatc ggtttggcgc gcaactgatc aatcaatcct ggcgtgacgg gatagatatt
    41761 gaccattttg tccaggtcat actgattgtc aggtagttca atgacatcct tgttcctggt
    41821 cgataaattc tgaccaggaa caagggtaca tgctgtcaaa gacagaacag ccaatgtcag
    41881 taccgaaaac ttaaaaatgt tctttttcat tggtttatat ttatcagtca atgtaatgtt
    41941 atgaattacg tcaggttatt gtccaaccgg tacttctcgc tctgccgtca ttggatagag
    42001 ctggtatttg cgtgacagca tttgtccacc atcacgcgtc aatggtgtcc acgaaaccac
    42061 cgcgcggttg cggttaggtc caatggtcat caagtcgaat ggaatcgaga tataaaaacc
    42121 tttactaaag ccgccttcgc cgtagtcatc tttagatacg ttactgattg ccgcccatac
    42181 ccctaccgcc acgccgctgt caaagcgttt ggcgacgtcg atcgttgctc ctttatcttt
    42241 tgccagatat tgcccaacgc taagtttcat cagtacgcca ttgagcgtcg gcgggttcca
    42301 gtaagccgtc acgaaaccag ttggcgtgga ataatcggtg aagcgcatca tgttgtccca
    42361 gtcacgttgc ttcacgtagt taacgtccac acccagcgcc cagctggcat ctagcgggcg
    42421 ataaagcagc tcggaaccga caccggcgta catcgtttcc agataaccgc catacacctg
    42481 gccatagaaa ccattgccta agtcggcaaa gtagttcgcc tgcaagttgt tgagataaac
    42541 gtcattgcga acgtaatcac ggatatgcgt gcgcacgcgg ggcagggtag agtccgcggg
    42601 caacagcgaa gacttaaact tgtcgtagtt gttgtaaata ttggtgaaaa taccgccatc
    42661 aagcagcagg tggtcggtaa accagtagcg ggcactggac atcagcccca gctggaacat
    42721 atagaaatct tccgggccgc ccagcgactg tgaaagtgtt gggttgaaag agtagctaaa
    42781 gcgatcttca cgaatacggt agccccgacc aaaggcagaa agatcttctg cttcaacacg
    42841 ttgttgttga agttgctctg attgaccagg cgctgtacca gccagctgtt tgcgcaggct
    42901 ggctacgtcg gtttcggtag tcaccatcgc catatgctcg cgcttttgcg tcacgctaat
    42961 cttctcaacg ccttgcggca ggttattcac cagaatccgg ttggcacgat cgaccgcttc
    43021 gcgagaatca cggtatttgt attgttgacc agacatatac agcgtcttat cgcgcagctg
    43081 aatttccggt gcttcaaaac ctgcgttgta cttcagcgcg gtaagttggt tcgctactgt
    43141 ggtgtactgc aatccttcag attcaggcgc aggttgatat gccggttttg gcgtatcgcg
    43201 cagggcaggg cgcagatcgt tgaaattggt ccgtaacgtg aagccaaaca tcaacgtgtt
    43261 accgcgttca taactcaggt tgagatctgc ccagctggca gcgcgataaa ctgcgccgac
    43321 gttgaaatgg cttgcctgag gcagtttgcc agcgaaatca ttctggtaat tgttgccatc
    43381 gtattcgagt ttcagacgca ggggattcca cggcgtttga tactcaatgc cgccaaagat
    43441 ggaagccggg ccacgaaaga tatcgctaaa gctgatatcg cccgcatcgt gagactctgc
    43501 gcgatgacaa tatttatcgt tcacccggca aaacgggttg gtaatattgc ccgcattacc
    43561 ggcgtagccc catgccatcc cgagggtgaa atcaaatggc cccgcttgct tgctggccac
    43621 cagatactca ccgtcaaaca gacccgtacc agcaatatca cgtttaccaa acgccacttg
    43681 cggtagccag taaccttctt cccacaggcg aagtttaaaa tcgaatgatt tgtctttgta
    43741 tgactgatcg ccgctgaaat cttcccactg gctatatttg cgtgtgcgca catccgtata
    43801 acgaatggtg ccttccagcc atgggaacag cgccacggag gtggagtaga accggtattg
    43861 atcgttatcc cggtagttga cgctgaattc accttccggt gcgatgcgcg catttggcat
    43921 ctgcaacaat cctgtgccgc caaagtctga ttgcgacgaa cccagcggat ccgggtaggt
    43981 taatacttca gcatgacagg cactggagac ggcaatggcc aggcagctta aaagataaga
    44041 attcttcttc atcagtcagg aacacgttgc gttaaaacag acacaatctg gtcatttaaa
    44101 tcagcatatt tttcgggcag tacatgcgca gaaaagccca accaaagctg gctgccaggc
    44161 ggtgggtcca catgtctttt attccacagg gcaacagggg cgacgacagt ctcaccctca
    44221 ggcgtaatca ccataacgtt attcttgtcc gcgcctgcaa ggcgggggtg atcttgcaga
    44281 taatcggtaa cgctacggcc tgcctgccag ggcaattgcc cggccccaga aaccgcaccc
    44341 agcagagtaa tagtcaccgg acgctgtacg gtatagagcg tatagtcccc gaccaacggg
    44401 ggattgctgt tctcatccac tcgaacaaaa tcagggtcca gtttgaccgg taagcgacca
    44461 gtgatattga gattgagtaa ctgctggcgc acagatttaa tcgttgccgc cacatcgtcg
    44521 tcagcttctg cttcccagga agcaagctgt gccatgacat gttggtagtc tttaagcgct
    44581 ttagctttcg ccgcagagtc ggtcagcaag gcaccaggcc accagaggcg atcgcgcagt
    44641 tgcggttgtg tcaccaactg gacaacattt tccatggggc caacggaaag tgtctgttgt
    44701 tcgccaggca gataaatagt caccgttcct tgcgcaaagg catggggtgt cattacgtaa
    44761 agtacgctgg caatgaaata cgactgtaat ttattcatgg tgcgggttta agaaacgtca
    44821 tttctacggg aataacccct gcgcctaaca tttgccgact ttgacgaacc tggccagtag
    44881 ccgaatcgac ccagaatgtg ttttgccact gtttttctgg ccgcgtggaa gtcacctctt
    44941 cctgccagac attacacagc acattgcgac ccgcaatatt cagcgtctct aatccagcaa
    45001 aggaaaaagt agaactcagg gtcgcagagc gaaaatggtt gtcttcactc cagagaatat
    45061 cgcgcgtcca gcggctgcca tcttttattg ccagcgcgtt acgcagaggg tcctgcccgg
    45121 aatttgtcac ttccagcaga ttattattaa gtttgacggt ttttaaaaga cgtccattgt
    45181 gggtaaccag catggcgtta tcctgggata accatttgct ttgttcttgt tctatatatc
    45241 ccagtaccac aaagattcgt tgcccttcat taaggcgtaa atacatcgtg gaataaggca
    45301 acgcctggat ctgctgatcc gctacggtga tatcctgatt atcgaaaagg ctggcgcgaa
    45361 atgtatcgac catactttgc tggctgtgcg tacatcccgc aagaaatagt gcgaaaatcg
    45421 ataaaataag agggcgcacc tttaatcctt gaaaggttaa ttaaaaaaat gcaaatcttt
    45481 aaagcccggt acgaatatcg caaccgggta tcatttaact ttaatttcga cgcgttaaag
    45541 cagtattagc gtgtagtgga cgtggtggtt gaggtgttat gagaaccgcc atcgccactg
    45601 tcatttgctg caacaactgc caacgtcgcc acaccaacag ccgttgccac accgacaact
    45661 gtcgccgtgc cgacagcgcc agcagccacg ccaccagtgg tagtagcagt cgtggttgcg
    45721 ccggtagtgg tcgttgtggt gccagtagta cccgtcgttg cctcggtccc gtttgttgct
    45781 tcaggggcag caaacgcagc tggcgtcgtc aacatgaagg ccataaggat tgcagaaagc
    45841 ttgtgtttca taacttttcc tttattcatc gcatggacaa tacgtacgct tgagatcagg
    45901 attgtctact ttgagtataa catccttgtg aaatctccct ttcctcatac cgcttgcact
    45961 atatactgcg ggtaggaaag gcgcgcagag ggaaatataa gattgttaac tatccccctc
    46021 tggaaatacg acttgtgagc ataagataaa tcttagcaaa atacaaatta aagataagga
    46081 aattgttacg aaagctatta attattgctg gtaatatagt ttcaagtggt actataactg
    46141 gctgttaaat ggcatttata actattaggt gcagagatat tcgcttaaat ggattagttt
    46201 ctttgtggaa aagtaactga tgttataata tatgatgttg actattgcac tattccaata
    46261 aaaccagtca gctttaaaca agcagcgtca tattaagaga gataaacatt tgccgctgtt
    46321 ggtcctcgca ggccatttac gcggcaaaat tccacacgta atcctggtat aagcacttct
    46381 gcgtcgcggg gagtgaatgc ggaaatatgg acctgaactt ctttacgacc gtcggagggg
    46441 ataatgaatc ctttgccgct tttgcgatca aaggttttga caattcctgt cattttacgg
    46501 gacaaacaaa ttccttactg aaaatactgc gctgcactat acggggttaa taaaataaag
    46561 ccagcgatat ttaagaccgc cggacggcta aaataaaatt tgcttaatct caattatcat
    46621 gcgttaatag ctgcgtcggt ttgaaagaca gacagcatac aaagtagttt actaaagcag
    46681 ttctcattat caggcattat ccccttcttt tgagtctctc tcctgaacac taagtagttt
    46741 ctgtattaaa gccctgtttg ccgaaaggcc caaaatgaag gaagtaaaat atgtctaata
    46801 aaatgactgg tttagtaaaa tggtttaacg cagataaagg ttttggcttt atcactcctg
    46861 atgatggcag caaagacgtt ttcgtccatt tcactgccat ccagagcaat gaattccgca
    46921 cgctgaacga aaatcagaaa gttgaatttt ctattgagca ggggcaacgt ggccccgcgg
    46981 cagcgaacgt tgttacgctc taaggttgcc gttattactc aacatctcca tttccgctgt
    47041 ccatgttgtc atggttcaca gtaccgcaca tcggcattcg atgtgacgga gcgaaatcct
    47101 ttgggcgcta agtgtatttt ttgtaaatcg acgatgatca cctttgataa cgtcacgctg
    47161 caaatacgca ctgaccatgc gccgctggat ttcacaaaat aatatcaggc tccctcg
//
LOCUS       DAJVSY010000007        45400 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.007, whole genome shotgun sequence.
ACCESSION   DAJVSY010000007 DAJVSY010000000
VERSION     DAJVSY010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 45400)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 45400)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..45400
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.007"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(17..1189)
                     /gene="cgtA"
                     /locus_tag="OQQ19_000415"
     CDS             complement(17..1189)
                     /gene="cgtA"
                     /locus_tag="OQQ19_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Obg family GTPase CgtA"
                     /protein_id="HCS1802165.1"
                     /translation="MKFVDEASILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGD
                     VWMEADENLNTLIDYRFEKSFRAERGQNGASRDCTGKRGKDVTIKVPVGTRVIDQGTG
                     ETMGDMTKHGQRLLVAKGGWHGLGNTRFKSSVNRTPRQKTNGTPGDKRELLLELMLLA
                     DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLI
                     EGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGTDPVENARIIISELEKYSQDLAAK
                     PRWLVFNKIDLLDKAEAEEKAKAIAEALGWEDKYYLISAASGLGVKDLCWDVMTFIIE
                     NPVVQAEEAKQPEKVEFMWDDYHRQQLEEIAEEDDEDWDDDWDEDDEEGVEFIYKR"
     gene            complement(1205..2170)
                     /locus_tag="OQQ19_000416"
     CDS             complement(1205..2170)
                     /locus_tag="OQQ19_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012135318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1802166.1"
                     /translation="MKQQAGIGILLALTTAICWGALPIAMKQVLEVMEPPTIVFYRFL
                     MASIGLGAILAVKKRLPPLRVFRKPRWLILLAVATAGLFGNFILFSSSLQYLSPTASQ
                     VIGQLSPVGMMVASVFILKEKMRSTQVVGALMLLSGLVMFFNTSLVEIFTKLTDYTWG
                     VIFGVGAATVWVSYGVAQKVLLRRLASPQILFLLYTLCTIALFPLAKPGVIAQLSHWQ
                     LACLIFCGLNTLVGYGALAEAMARWQAAQVSAIITLTPLFTLFFSDLLSLAWPDFFAR
                     PMLNLLGYLGAFVVVAGAMYSAIGHRIWGGLRKHTTVVSQPRAGE"
     gene            complement(2297..2554)
                     /gene="rpmA"
                     /locus_tag="OQQ19_000417"
     CDS             complement(2297..2554)
                     /gene="rpmA"
                     /locus_tag="OQQ19_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HCS1802167.1"
                     /translation="MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK
                     FHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE"
     gene            complement(2575..2886)
                     /gene="rplU"
                     /locus_tag="OQQ19_000418"
     CDS             complement(2575..2886)
                     /gene="rplU"
                     /locus_tag="OQQ19_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015960603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HCS1802168.1"
                     /translation="MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANG
                     EEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGIS
                     A"
     gene            3145..4116
                     /gene="ispB"
                     /locus_tag="OQQ19_000419"
     CDS             3145..4116
                     /gene="ispB"
                     /locus_tag="OQQ19_000419"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HCS1802169.1"
                     /translation="MNLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVSGGG
                     KRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAA
                     FGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITE
                     ENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNA
                     DGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQGNGRHLLEPVLEAMN
                     ACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLAHIAVQRDR"
     gene            4346..4624
                     /gene="sfsB"
                     /locus_tag="OQQ19_000420"
     CDS             4346..4624
                     /gene="sfsB"
                     /locus_tag="OQQ19_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator SfsB"
                     /protein_id="HCS1802170.1"
                     /translation="MESNFIDWHPPDIIAGLRKKGTSMAAESRRNGLSSSTLANALSR
                     PWPKGEMIIAKALGTDPWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK"
     gene            complement(4672..5931)
                     /gene="murA"
                     /locus_tag="OQQ19_000421"
     CDS             complement(4672..5931)
                     /gene="murA"
                     /locus_tag="OQQ19_000421"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HCS1802171.1"
                     /translation="MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNV
                     PKLKDVDTSMKLLSQLGAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVA
                     RFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDK
                     VSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGV
                     ERLGGGVYRVLPDRIETGTFLVAAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVG
                     EDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMH
                     VPELSRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRI
                     YHIDRGYERIEDKLRALGANIKRVKGE"
     gene            complement(5986..6240)
                     /gene="ibaG"
                     /locus_tag="OQQ19_000422"
     CDS             complement(5986..6240)
                     /gene="ibaG"
                     /locus_tag="OQQ19_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417657.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family iron metabolism protein IbaG"
                     /protein_id="HCS1802172.1"
                     /translation="MENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVK
                     KQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF"
     gene            complement(6400..6693)
                     /gene="mlaB"
                     /locus_tag="OQQ19_000423"
     CDS             complement(6400..6693)
                     /gene="mlaB"
                     /locus_tag="OQQ19_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312097.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance protein MlaB"
                     /protein_id="HCS1802173.1"
                     /translation="MSESLSWMQTGDTLALSGELDQDVLLPLWEMREEAVKGITCIDL
                     SRVSRVDTGGLALLLQLIDLAKKQGNNVTLQGVNDKVYTLAKLYNLPADVLPR"
     gene            complement(6693..7328)
                     /gene="mlaC"
                     /locus_tag="OQQ19_000424"
     CDS             complement(6693..7328)
                     /gene="mlaC"
                     /locus_tag="OQQ19_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HCS1802174.1"
                     /translation="MFKRLMMVALLVIAPLSAATAADQTNPYKLMDEAAQKTFDRLKN
                     EQPQIRANPDYLRTIVDQELLPYVQVKYAGALVLGQYYKSATPAQREAYFAAFREYLK
                     QAYGQALAMYHGQTYQIAPEQPLGDKTIVPIRVTIIDPNGRPPVRLDFQWRKNSQTGN
                     WQAYDMIAEGVSMITTKQNEWGTLLRTKGIDGLTAQLKSISQQKITLEEKK"
     gene            complement(7347..7898)
                     /gene="mlaD"
                     /locus_tag="OQQ19_000425"
     CDS             complement(7347..7898)
                     /gene="mlaD"
                     /locus_tag="OQQ19_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HCS1802175.1"
                     /translation="MQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYA
                     TFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIR
                     TSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNK
                     NSGDAPAAAPGNNETTEPVGTTK"
     gene            complement(7903..8685)
                     /gene="mlaE"
                     /locus_tag="OQQ19_000426"
     CDS             complement(7903..8685)
                     /gene="mlaE"
                     /locus_tag="OQQ19_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014071945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HCS1802176.1"
                     /translation="MLLNALASLGHKGIKTLRTFGRAGLMLFNALVGKPEFRKHAPLL
                     VRQLYNVGVLSMLIIVVSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPV
                     VAALLFAGRAGSALTAEIGLMRATEQLSSMEMMAVDPLRRVISPRFWAGVISLPLLTV
                     IFVAVGIWGGSLVGVSWKGIDSGFFWSAMQNAVDWRMDLVNCLIKSVVFAITVTWISL
                     FNGYDAIPTSAGISRATTRTVVHSSLAVLGLDFVLTALMFGN"
     gene            complement(8693..9502)
                     /gene="mlaF"
                     /locus_tag="OQQ19_000427"
     CDS             complement(8693..9502)
                     /gene="mlaF"
                     /locus_tag="OQQ19_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid ABC transporter ATP-binding protein
                     MlaF"
                     /protein_id="HCS1802177.1"
                     /translation="MEQSVANLVDMRDVSFTRGNRCIFDNISLTVPRGKITAIMGPSG
                     IGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNV
                     FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA
                     LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWIL
                     ADKKIVAHGSAQALQANPDPRVRQFLDGIADGPVPFRYPAGDYHADLLPGS"
     gene            9712..10689
                     /locus_tag="OQQ19_000428"
     CDS             9712..10689
                     /locus_tag="OQQ19_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/sodium antiporter"
                     /protein_id="HCS1802178.1"
                     /translation="MLLATALLIVGLLLVVYSADRLVFAASILCRTFGIPPLIIGMTV
                     VSIGTSLPEIIVSLAASLHEQRDLAVGTALGSNIINILLILGLAALVRPFTVHSDVLR
                     RELPLMLLVSVVAGSVLYDGQLSRSDGIFLLFLAVLWLLFIVKLARQAERQGTDSLTR
                     EQLAELPRDGGLPVAFLWLGIALIIMPVATRMVVDNATVLANYFAISELTMGLTAIAI
                     GTSLPELATAIAGVRKGENDIAVGNIIGANIFNIVIVLGLPALITPGEIDPLAYSRDY
                     SVMLLVSIIFALLCWRRSPQPGRGVGVLLTGGFIVWLAMLYWLSPILVE"
     gene            10703..11689
                     /gene="kdsD"
                     /locus_tag="OQQ19_000429"
     CDS             10703..11689
                     /gene="kdsD"
                     /locus_tag="OQQ19_000429"
                     /EC_number="5.3.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-5-phosphate isomerase KdsD"
                     /protein_id="HCS1802179.1"
                     /translation="MSHVELQPGFDFQQAGKEVLAIERECLAELDQYINQNFTLACEK
                     MFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIA
                     ISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAP
                     TSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPH
                     VKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRRVFDMGVDVRQLSIADV
                     MTPGGIRVRPGILAVEALNLMQSRHITSVMVADGDHLLGVLHMHDLLRAGVV"
     gene            11710..12276
                     /gene="kdsC"
                     /locus_tag="OQQ19_000430"
     CDS             11710..12276
                     /gene="kdsC"
                     /locus_tag="OQQ19_000430"
                     /EC_number="3.1.3.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate-8-phosphatase KdsC"
                     /protein_id="HCS1802180.1"
                     /translation="MSKAGASLATCYGPVSADVIAKAENIRLLILDVDGVLSDGLIYM
                     GNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNK
                     LIAFSELLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIA
                     GGRGAVREVCDLLLLAQGKLDEAKGQSI"
     gene            12273..12848
                     /gene="lptC"
                     /locus_tag="OQQ19_000431"
     CDS             12273..12848
                     /gene="lptC"
                     /locus_tag="OQQ19_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HCS1802181.1"
                     /translation="MSKARRWVTIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKS
                     EHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAK
                     LTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSG
                     LKMRGNLRSKNAELIEKVRTSYEIQNKQTQP"
     gene            12817..13374
                     /gene="lptA"
                     /locus_tag="OQQ19_000432"
     CDS             12817..13374
                     /gene="lptA"
                     /locus_tag="OQQ19_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide ABC transporter
                     substrate-binding protein LptA"
                     /protein_id="HCS1802182.1"
                     /translation="MKFKTNKLSLNLVLASSLLAASIPAFAVTGDTDQPIHIESDQQS
                     LDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNG
                     KPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRV
                     TTVLVPSQLQDKNNKGQTPAQKKGN"
     gene            13381..14106
                     /gene="lptB"
                     /locus_tag="OQQ19_000433"
     CDS             13381..14106
                     /gene="lptB"
                     /locus_tag="OQQ19_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003861862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HCS1802183.1"
                     /translation="MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTT
                     TFYMVVGIVPRDAGNIIIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV
                     LQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL
                     LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH
                     GTPTEILQDEHVKRVYLGEDFRL"
     gene            14154..15587
                     /gene="rpoN"
                     /locus_tag="OQQ19_000434"
     CDS             14154..15587
                     /gene="rpoN"
                     /locus_tag="OQQ19_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HCS1802184.1"
                     /translation="MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESN
                     PLLEQIDTHEEIDTSETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSG
                     DYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLED
                     ILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARL
                     IISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDV
                     LVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLE
                     SRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHS
                     PRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG
                     IMVARRTVAKYRESLSIPPSNQRKQLV"
     gene            15610..15897
                     /gene="hpf"
                     /locus_tag="OQQ19_000435"
     CDS             15610..15897
                     /gene="hpf"
                     /locus_tag="OQQ19_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome hibernation promoting factor"
                     /protein_id="HCS1802185.1"
                     /translation="MQLNITGNNVEITEALREFVRAKFAKLEQYFDRINQVYVVLKVE
                     KVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH"
     gene            16015..16506
                     /gene="ptsN"
                     /locus_tag="OQQ19_000436"
     CDS             16015..16506
                     /gene="ptsN"
                     /locus_tag="OQQ19_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS IIA-like nitrogen regulatory protein PtsN"
                     /protein_id="HCS1802186.1"
                     /translation="MTNNDTTLQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLS
                     LPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDNQ
                     PVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIITDTEGTP
                     DEA"
     gene            16552..17406
                     /gene="rapZ"
                     /locus_tag="OQQ19_000437"
     CDS             16552..17406
                     /gene="rapZ"
                     /locus_tag="OQQ19_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HCS1802187.1"
                     /translation="MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTL
                     ADREISAAVSIDVRNMPESPEIFEQAMSNLPDAFSPQLLFLDADRNTLIRRYSDTRRL
                     HPLSSKNLSLESAIDKESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKREREL
                     TMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNF
                     IYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRH
                     RTLEKRKP"
     gene            17403..17675
                     /gene="npr"
                     /locus_tag="OQQ19_000438"
     CDS             17403..17675
                     /gene="npr"
                     /locus_tag="OQQ19_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000216792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS phosphocarrier protein NPr"
                     /protein_id="HCS1802188.1"
                     /translation="MTVKQTVEITNKLGMHARPAMKLFELMQGFDAEVLLRNDEGTEA
                     EANSVIALLMLDSAKGRQIEVEATGPQEEEALAAVIALFNSGFDED"
     gene            17889..18521
                     /gene="yrbL"
                     /locus_tag="OQQ19_000439"
     CDS             17889..18521
                     /gene="yrbL"
                     /locus_tag="OQQ19_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoP regulatory network protein YrbL"
                     /protein_id="HCS1802189.1"
                     /translation="MIRLSEQSPLGTGRHRKCYAHPEDAQRCIKIVYHRGDGGDKEIR
                     RELKYYAYLGRRLKDWSGIPRYHGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQCR
                     YEEDIAQLRQLLKQLKRYLQDNRIVTMSLKPQNILCHHISESEVIPVVCDNIGESTLI
                     PLATWSKWCCLRKQERLWKRFIAQPALAIALQKDLQPRESKTLALTSREA"
     gene            complement(18518..19246)
                     /gene="mtgA"
                     /locus_tag="OQQ19_000440"
     CDS             complement(18518..19246)
                     /gene="mtgA"
                     /locus_tag="OQQ19_000440"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HCS1802190.1"
                     /translation="MSKSRLTVFSFVRRFLLRLMVVLAVFWGGGIALFSVAPVPFSAV
                     MVERQVSAWLHGNFRYVAHSDWVSMDQISPWMGLAVIAAEDQKFPEHRGFDVASIEKA
                     LAHNERNENRIRGASTISQQTAKNLFLWDGRSWVRKGLEAGLTLGIETVWSKKRILTV
                     YLNIAEFGDGVFGVEAAAQRYFHKPASKLTRSEAALLAAVLPNPLRFKVSSPSGYVRS
                     RQAWILRQMYQLGGEPFMQQHQLD"
     gene            complement(19243..19896)
                     /gene="elbB"
                     /locus_tag="OQQ19_000441"
     CDS             complement(19243..19896)
                     /gene="elbB"
                     /locus_tag="OQQ19_000441"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709007.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenoid biosynthesis glyoxalase ElbB"
                     /protein_id="HCS1802191.1"
                     /translation="MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ
                     QVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLS
                     NFATLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTA
                     EVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAYMLAQNIAEAASGIDKLVSRVLVLAE"
     gene            complement(20126..22462)
                     /gene="arcB"
                     /locus_tag="OQQ19_000442"
     CDS             complement(20126..22462)
                     /gene="arcB"
                     /locus_tag="OQQ19_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobic respiration two-component sensor
                     histidine kinase ArcB"
                     /protein_id="HCS1802192.1"
                     /translation="MKQIRLLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTM
                     VLHGQVESIDVIRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRERDL
                     SLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKEREETQIQLEQQSSFLRSF
                     LDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLKPADVYSPEAAAKVIETDEK
                     VFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLMGFGRDITERKRYQDAL
                     ERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNI
                     FNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQV
                     ITDGTRLRQILWNLISNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKI
                     FAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPSV
                     AEEVDDAFDEDDMPLPALNVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFK
                     PGEYDLVLLDIQLPDMTGLDISRELTKRYPREDLPPLVALTANVLKDKQEYLNAGMDD
                     VLSKPLSVPALTAMIKKFWDTQDDEESTVTTEENSKSEALLDIPMLEQYLELVGPKLI
                     TDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQS
                     PDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKATKK"
     gene            complement(22558..23487)
                     /locus_tag="OQQ19_000443"
     CDS             complement(22558..23487)
                     /locus_tag="OQQ19_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312117.1"
                     /note="This family includes YhcC from E. coli K-12, an
                     uncharacterized radical SAM protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01212 family radical SAM protein"
                     /protein_id="HCS1802193.1"
                     /translation="MQLQKLVNMFGGDLTRRYGQKVHKLTLHGGFSCPNRDGTIGRGG
                     CTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYFQAYTSTFAEVQVLRSMYQ
                     QAVSQANIVGLCVGTRPDCVPDAVLDLLCEYKDQGYEVWLELGLQTAHDKTLHRINRG
                     HDFACYQRTTQLARQRGLKVCSHLIVGLPGEGQAECLQTLERVVETGVDGIKLHPLHI
                     VKGSIMAKAWEAGRLNGIELEDYTLTAGEMIRHTPPEVIYHRISASARRPTLLAPLWC
                     ENRWTGMVELDRYLNEHGVQGSALGRPWLPPTE"
     gene            24162..28622
                     /gene="gltB"
                     /locus_tag="OQQ19_000444"
     CDS             24162..28622
                     /gene="gltB"
                     /locus_tag="OQQ19_000444"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HCS1802194.1"
                     /translation="MLYDKSLERDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGA
                     ILADGKTGDGCGLLLQKPDRFFRIVAQERGWRLAKNYAVGMLFLNKDPELAAAARRIV
                     EEELQRETLSIVGWRDVPTNEGVLGEIALSSLPRIEQIFVNAPAGWRPRDMERRLFIA
                     RRRIEKRLEADKDFYVCSLSNLVNIYKGLCMPADLPRFYLDLADLRLESAICLFHQRF
                     STNTVPRWPLAQPFRYLAHNGEINTITGNRQWARARTYKFQTPLIPDLHDAAPFVNET
                     GSDSSSMDNMLELLLAGGMDIIRAMRLLVPPAWQNNPDMDPELRAFFDFNSMHMEPWD
                     GPAGIVMSDGRFAACNLDRNGLRPARYVITKDKLITCASEVGIWDYQPDEVVEKGRVG
                     PGELMVIDTRSGRILHSAETDDDLKSRHPYKEWMEKNVRRLVPFEDLPDEEVGSRELD
                     DDTLASYQKQFNYSAEELDSVIRVLGENGQEAVGSMGDDTPFAVLSSQPRIIYDYFRQ
                     QFAQVTNPPIDPLREAHVMSLATSIGREMNVFCEAEGQAHRLSFKSPILLYSDFKQLT
                     TMKEEHYRADTLDITFDVTKTTLEATVKELCDKAEKMVRSGTVLLVLSDRNIAKDRLP
                     VPAPMAVGAIQTRLVDQSLRCDANIIVETASARDPHHFAVLLGFGATAIYPYLAYETL
                     GRLVDTHAIAKDYRTVMLNYRNGINKGLYKIMSKMGISTIASYRCSKLFEAVGLHDDV
                     VGLCFQGAVSRIGGASFEDFQQDLLNLSKRAWLARKPISQGGLLKYVHGGEYHAYNPD
                     VVRTLQQAVQSGEYSDYQEYAKLVNERPATTLRDLLAITPGENAVNIADVEPASELFK
                     RFDTAAMSIGALSPEAHEALAEAMNSIGGNSNSGEGGEDPARYGTNKVSRIKQVASGR
                     FGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHH
                     DIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGT
                     GASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDIIKAAILGAE
                     SFGFGTGPMVALGCKYLRICHLNNCATGVATQDDKLRKNHYHGLPFKVTNYFEFIARE
                     TRELMAQLGVTRLVDLIGRTDLLKELDGFTAKQQKLALSKLLETAEPHPGKALYCTEN
                     NPPFDNGLLNAQLLQQAKPFVDERQSKTFWFDIRNTDRSVGASLSGYIAQTHGDQGLA
                     ADPIKAYFNGTAGQSFGVWNAGGVELYLTGDANDYVGKGMAGGLIAIRPPVGSAFRSH
                     EASIIGNTCLYGATGGRLYAAGRAGERFGVRNSGAITVVEGIGDNGCEYMTGGIVCIL
                     GKTGVNFGAGMTGGFAYVLDESGDFRKRVNPELVEVLNVDDLAIHEEHLRGLITEHVQ
                     HTGSQRGEEILANWSTFATKFALVKPKSSDVKALLGHRSRSAAELRVQAQ"
     gene            28635..30053
                     /gene="gltD"
                     /locus_tag="OQQ19_000445"
     CDS             28635..30053
                     /gene="gltD"
                     /locus_tag="OQQ19_000445"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001540975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit GltD"
                     /protein_id="HCS1802195.1"
                     /translation="MSQNVYQFIDLQRVDPPKKPLKIRKIEFVEIYEQFSEGQAKAQA
                     DRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDR
                     LCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLA
                     CADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTE
                     VGRDVQLDDLLSDYDAVFLGVGTYQSMRGGLENKDADGVYAALPFLIANTKQLMGFGE
                     TRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKN
                     AREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPA
                     DAVIMAFGFRPHNMEWLAKHSVELDSQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSD
                     LVVTAIAEGRKAADGIMNWLEV"
     gene            30237..30716
                     /locus_tag="OQQ19_000446"
     CDS             30237..30716
                     /locus_tag="OQQ19_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005085993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HCS1802196.1"
                     /translation="MESLSERTSTGYQQIHDGIIHLVDSARTETVRSVNALMTATYWE
                     IGRRIVEFEQGGEARAAYGAQLIKRLSKDLSLRYKRGFSAKNLRQMRLFYLFFQHVEI
                     RQTVSGELTPLGIPQTPSAEFPSAKIWQTLSAKLRGCLIFPQLLYCISYFRFVYSCK"
     gene            30733..31038
                     /locus_tag="OQQ19_000447"
     CDS             30733..31038
                     /locus_tag="OQQ19_000447"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1802197.1"
                     /translation="MIYIEQLELIHKSGDVLYPVKITRKSSGKTAFHLVPFGLNKTHD
                     LLEVEDASEAIRLVIDERHSIRCSTLTATITNKKGKRIKRTGIYSIKGVNIKEYNVR"
     gene            complement(31114..31578)
                     /locus_tag="OQQ19_000448"
     CDS             complement(31114..31578)
                     /locus_tag="OQQ19_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HCS1802198.1"
                     /translation="MMMGEVQSLPSAGLHPALQDALTLALAARPQEKAPGRYELQGDN
                     IFMNVMTFNTQSPVEKKAELHEQYIDIQLLLNGEERILFGMAGTARQCEEFHHEDDYQ
                     LCSTIDNEQAIILKPGMFAVFMPSEPHKPGCVVGEPGEIKKVVVKVKADLMA"
     gene            complement(31575..32450)
                     /gene="nanK"
                     /locus_tag="OQQ19_000449"
     CDS             complement(31575..32450)
                     /gene="nanK"
                     /locus_tag="OQQ19_000449"
                     /EC_number="2.7.1.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312122.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine kinase"
                     /protein_id="HCS1802199.1"
                     /translation="MTTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPQALRDA
                     LAALVAPLQAHAQQVAIASTGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLSNLPTIA
                     INDAQAAAWAEYQALEGDITDMVFITVSTGVGGGVVSGGKLLTGPSGLAGHIGHTLAD
                     PHGPVCGCGRTGCVEAIASGRGIAAAAQGELMGADARTIFTRAGQGDEQAQQLIHRSA
                     HVLARLIADIKATTDCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHD
                     AGLLGAALLAQGEKL"
     gene            complement(32447..33136)
                     /locus_tag="OQQ19_000450"
     CDS             complement(32447..33136)
                     /locus_tag="OQQ19_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HCS1802200.1"
                     /translation="MSLLAQLDQKIAANGGLIVSCQPVPDSPLDKPEIVAAMALAAEQ
                     AGAVAIRIEGVANLQATRAVVSVPIIGIVKRDLEDSPVRITAYIEDVDALAQAGADII
                     AIDGTDRPRPVPVETLLARIHHHGLLAMTDCSTPEDGLACQKLGAEIIGTTLSGYTTP
                     ETPEEPDLALVKTLSDAGCRVIAEGRYNTPAQAADAMRHGAWAVTVGSAITRLEHICQ
                     WYNTAMKKAVL"
     gene            complement(33184..34674)
                     /gene="nanT"
                     /locus_tag="OQQ19_000451"
     CDS             complement(33184..34674)
                     /gene="nanT"
                     /locus_tag="OQQ19_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312124.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialic acid transporter NanT"
                     /protein_id="HCS1802201.1"
                     /translation="MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLT
                     EVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLAC
                     GFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVA
                     AQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILY
                     RGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSTGKRWPT
                     GVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYNPHTVANVLFFSGFGAAVGCCVSGFL
                     GDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIG
                     GYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSFSLTFVVILLI
                     GLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGSTKNDLVKTKS"
     gene            complement(34783..35676)
                     /gene="nanA"
                     /locus_tag="OQQ19_000452"
     CDS             complement(34783..35676)
                     /gene="nanA"
                     /locus_tag="OQQ19_000452"
                     /EC_number="4.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate lyase"
                     /protein_id="HCS1802202.1"
                     /translation="MATNLRGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYV
                     GGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDA
                     VSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPG
                     VGALKQTSGDLYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQ
                     GIVKALKEGDIQTAQKLQTECNKVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGP
                     VDEKYLPELKALAQQLMQERG"
     gene            complement(35798..36589)
                     /gene="nanR"
                     /locus_tag="OQQ19_000453"
     CDS             complement(35798..36589)
                     /gene="nanR"
                     /locus_tag="OQQ19_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417693.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NanR"
                     /protein_id="HCS1802203.1"
                     /translation="MGLMNAFDSQTEDSSPAIGRNLRSRPLARKKLSEMVEEELEQMI
                     RRREFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSADT
                     IIGELSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIDLLAKALEINSQ
                     SLDNNAAFIRSDVDFHRVLAEIPGNPIFMAIHVALLDWLIAARPTVTDQALHEHNNVS
                     YQQHIAIVDAIRRHDPDEADRALQSHLNSVSATWHAFGQTTNKKK"
     gene            36969..38335
                     /gene="dcuC"
                     /locus_tag="OQQ19_000454"
                     /pseudo
     CDS             36969..38335
                     /gene="dcuC"
                     /locus_tag="OQQ19_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417694.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuC"
     gene            complement(38378..38875)
                     /gene="sspB"
                     /locus_tag="OQQ19_000455"
     CDS             complement(38378..38875)
                     /gene="sspB"
                     /locus_tag="OQQ19_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HCS1802204.1"
                     /translation="MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPME
                     YARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGT
                     MFEPEAAYDEDTSIMNDEEASADNETVMSVIDGDKPDHDDDTHPDDEPPQPPRGGRPA
                     LRVVK"
     gene            complement(38881..39519)
                     /gene="sspA"
                     /locus_tag="OQQ19_000456"
     CDS             complement(38881..39519)
                     /gene="sspA"
                     /locus_tag="OQQ19_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stringent starvation protein A"
                     /protein_id="HCS1802205.1"
                     /translation="MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKD
                     NPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESRLY
                     MHRIEKDWYTLMNTIINGSASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCY
                     LAPLLWRLPQLGIEFSGPGAKELKGYMTRVFERDSFLASLTEAEREMRLGRS"
     gene            complement(39914..40306)
                     /gene="rpsI"
                     /locus_tag="OQQ19_000457"
     CDS             complement(39914..40306)
                     /gene="rpsI"
                     /locus_tag="OQQ19_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000829824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HCS1802206.1"
                     /translation="MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETA
                     RMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAG
                     FVTRDARQVERKKVGLRKARRRPQFSKR"
     gene            complement(40322..40750)
                     /gene="rplM"
                     /locus_tag="OQQ19_000458"
     CDS             complement(40322..40750)
                     /gene="rplM"
                     /locus_tag="OQQ19_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HCS1802207.1"
                     /translation="MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEY
                     TPHVDTGDYIIVLNADKVAVTGNKCTDKVYYHHTGHIGGIKQATFEEMIARRPERVIE
                     IAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI"
     gene            complement(40968..42095)
                     /gene="zapE"
                     /locus_tag="OQQ19_000459"
     CDS             complement(40968..42095)
                     /gene="zapE"
                     /locus_tag="OQQ19_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HCS1802208.1"
                     /translation="MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSRP
                     PAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQR
                     LHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLM
                     KALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTL
                     TQAHLWLSPLHDETRAQMDKLWLALAGAKRENSPTLEINHRPLATMGAENQTLAVSFT
                     TLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVS
                     AEVPLYEIYQGDRLKFEFQRCLSRLQEMQSEEYLKREHLAG"
     gene            42289..42687
                     /locus_tag="OQQ19_000460"
     CDS             42289..42687
                     /locus_tag="OQQ19_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1043 family protein"
                     /protein_id="HCS1802209.1"
                     /translation="MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAE
                     LDEYREELVSHFARSAELLDTMAHDYRQLYQHMAKSSSSLLPELSAEANPFRNRLAES
                     EASNDQAPVQMPRDYSEGASGLLRTGAKRD"
     gene            42841..44208
                     /gene="degQ"
                     /locus_tag="OQQ19_000461"
     CDS             42841..44208
                     /gene="degQ"
                     /locus_tag="OQQ19_000461"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine endoprotease DegQ"
                     /protein_id="HCS1802210.1"
                     /translation="MKKQTQLLSALALSVGLTLSASFQAVASIPGQVADQAPLPSLAP
                     MLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKG
                     YVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSD
                     KLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGAL
                     LNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEM
                     SADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIAT
                     TEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDCGKGI
                     KIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKPAIIALQIVRGNESI
                     YLLMR"
     gene            44298..45365
                     /gene="degS"
                     /locus_tag="OQQ19_000462"
     CDS             44298..45365
                     /gene="degS"
                     /locus_tag="OQQ19_000462"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane-stress sensor serine
                     endopeptidase DegS"
                     /protein_id="HCS1802211.1"
                     /translation="MFVKLLRSVAIGLIVGAILLVAMPSLRSLNPLSTPQFDSTDETP
                     ASYNLAVRRAAPAVVNVYNRGVNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDAD
                     QIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGN
                     PYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTL
                     SFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQSGGI
                     DQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV
                     VMRDDKQLTLQVTIQEYPATN"
BASE COUNT        11173 a        12128 c        11450 g        10649 t
ORIGIN      
        1 gccggggttt tgctgattaa cgcttgtaaa tgaactcaac gccttcttcg tcgtcttcgt
       61 cccagtcatc atcccagtcc tcatcatcct cttcagcaat ctcttcaagc tgctggcgat
      121 gataatcatc ccacatgaat tcgactttct ctggctgttt cgcttcttca gcctgcacga
      181 ccgggttttc aatgataaag gtcatcacat cccagcagag atctttcacg cccagtccac
      241 tcgccgcaga gatcagataa tatttatctt cccagcccag cgcttcagca atcgctttcg
      301 ctttctcttc agcttctgcc ttatccagca gatcgatctt attgaacact aaccaacgcg
      361 gtttcgccgc cagatcctgg ctgtattttt ccagctcgct gataataata cgcgcgtttt
      421 caaccggatc ggtgccgtca atcggatcga tatcgatgag gtgcaacagg acgcggcaac
      481 gttccaggtg cttcaggaag cggataccca gacctgcgcc ttccgcagcg ccttcaatca
      541 gtcctggaat atcggcaaca acgaagctct tttcgttgtc cattcgtacc acacccagac
      601 ttggcaccag agtggtaaac ggataatccg ccactttcgg tttagccgcc gataccgcgc
      661 gaataaaggt cgatttaccc gcgtttggca tccccaacat accgacgtca gccagcagca
      721 tcagctccag cagcagctca cgcttatcac ccggcgtacc gttggttttc tgccgtggtg
      781 tacggttaac ggacgatttg aaacgggtat tgcccagacc gtgccagccg cccttagcaa
      841 ccagcagacg ctgaccgtgt ttagtcatat cgcccatggt ttcaccagta ccctggtcga
      901 ttacacgcgt acctaccggc actttaatcg tcacgtcttt accgcgctta ccggtacaat
      961 cgcggcttgc gccgttctga ccgcgctctg cacggaaaga tttttcaaaa cgataatcga
     1021 taagcgtgtt caggttttcg tcggcttcca tccatacgtc accaccatca ccaccgtcgc
     1081 cgccatccgg gccgcctttc ggaatatact tttcgcggcg gaagctcacg caaccattac
     1141 cgccatcacc tgcaacgacc agaatcgatg cttcatcaac aaacttcatt ttattctccg
     1201 taaatcattc gcctgcgcgg ggttgcgata ccaccgttgt atgcttacgt aatccgcccc
     1261 aaatacgatg accaatggcg gaatacatcg cgcccgcaac cacgacaaac gcaccgagat
     1321 aacctaaaag gtttaacatc ggtctggcga agaaatcggg ccaggccagt gataaaagat
     1381 ctgaaaaaaa cagcgtaaac agtggggtga gcgtgatgat cgcgctcacc tgcgctgcct
     1441 gccagcgagc catcgcttcc gccagggcgc catatcctac caatgtattc agtccgcaaa
     1501 aaattaaaca tgcgagctgc cagtggctaa gctgcgctat cactcctggc tttgccagag
     1561 ggaagagcgc aattgtacat aaagtgtaca gcaaaaacag gatctgcggt gaggccagcc
     1621 gacgcaataa aaccttttgc gccacgccat aactcaccca aactgtcgcc gcaccgaccc
     1681 caaagatgac tccccaggtg taatcagtga gctttgtaaa tatctcgacc agactggtgt
     1741 taaaaaacat caccaggccg ctcaggagca tcaatgcccc tacaacctga gtgctgcgca
     1801 ttttctcttt caggataaat acgctggcaa ccatcatgcc aactggcgag agttgcccaa
     1861 tcacctgcga agcggtcgga ctcaggtatt gcaaggatga gctgaacagg atgaagttcc
     1921 caaacagccc ggcggtcgcc actgccaaca aaatcaacca gcgtggctta cgaaacacgc
     1981 gtaatggcgg caacctcttc ttcaccgcaa gaatggcacc caggccaata ctcgccatca
     2041 agaaacggta aaacacgatt gtcggaggtt ccatcacctc cagcacctgc ttcattgcga
     2101 ttggcaacgc cccccagcaa attgctgtgg tgagcgccaa aagaatgcca atgcctgcct
     2161 gctgcttcat accgtattcc ctgcaaagcg catttgcgga ttaacgtcgc accatgctca
     2221 tttttaccgg ttatcgaatg taaaaagccc cgcaacgtgt tgcggggctt tcatccgtta
     2281 ccgggacgcg aaaaacttat tcagcttcga tgctgataaa tttacggttt ttcgggcctt
     2341 taacttcgaa tttcacttta ccgtctgctt tagcaaacag agtgtggtca cgaccgcaac
     2401 ctacgttagc gccagcgtgg aatttggtac cacgttgacg aacgatgatg ctacccgcca
     2461 gaacggattc gccaccgaaa cgcttaacgc ccaggcgttt agcttctgaa tcgcgaccgt
     2521 tacgtgtgga gccgccagcc tttttatgtg ccatttgaaa tctctcctca ggtcttaggc
     2581 gctgatgcca gtaattttca catcagtgaa ccactgacga tggccctgct gcttacgata
     2641 gtgtttacga cgacgaaact taacgatttt aactttctcg ccacgaccgt gagcaacaac
     2701 ttcagctttg attacgccgc catcaacgaa aggaacgccg attttgactt cttcaccgtt
     2761 tgcgatcatc agcacttcag cgaactcaac agtttcgcca gttgcgatgt ccagcttttc
     2821 caggcgaacg gtctgacctt cgcttactcg gtgttgttta ccaccacttt ggaaaaccgc
     2881 gtacatataa aactccgctt ccgcgcacac cttttcaatg attcagagtg cgctataaat
     2941 attcacaata gggcgcgaat attacgcaaa acgcacgtct ttgacaagtg ctacagtcaa
     3001 tacacgaaga aaaaaaacac aacttgtacg gtaacgttta tctgtgccat tttttcagta
     3061 caatcaccct atattcctaa ccataaaccc taagttgcct ttgttcacag taaggtaatc
     3121 ggggcgaaaa gcccggcttt tgcgatgaat ttagaaaaaa tcaatgagtt aaccgcgcaa
     3181 gatatggcgg gtgttaatgc ggcaatcctt gagcagctta attccgacgt ccaactgatc
     3241 aatcagttag gctattacat cgtcagcggc ggcggtaaac gtattcgtcc gatgattgct
     3301 gtactggctg cacgagctgt tggctatgag ggaaatgcgc atgtcaccat tgctgccctg
     3361 atcgagttta tccacacggc gactctgcta cacgacgacg ttgtggatga atcagatatg
     3421 cgcaggggta aagctaccgc caacgctgca tttggcaatg ccgccagcgt gctggtaggc
     3481 gattttattt atacccgcgc gttccagatg atgaccagcc tcggttcact caaagtgctg
     3541 gaagtcatgt cagaagctgt aaacgtcatc gcagaaggtg aagttctgca actgatgaac
     3601 gttaacgatc cggacatcac tgaagaaaac tacatgcgcg ttatctatag caaaaccgcg
     3661 cgtctgtttg aggctgccgc gcagtgttcc gggattctgg ctggctgtac gccggaggag
     3721 gagaaaggcc tgcaggatta tgggcgctat ctcggcactg ctttccagtt gatcgacgat
     3781 ttactcgatt acaatgccga tggcgaacag ttaggtaaaa acgtcggcga cgatctgaac
     3841 gaaggtaaac cgacgctgcc gctgctgcat gcgatgcatc atggcacacc agaacaggca
     3901 cagatgatcc gtaccgccat cgaacagggt aacggtcgcc atcttctgga accggttctg
     3961 gaagcaatga acgcttgtgg atctcttgaa tggacgcgtc agcgcgccga ggaagaagca
     4021 gacaaagcca tcgcagcgtt acaggtgctc ccggacaccc cttggcgaga agcactcatc
     4081 ggcctcgcgc acatcgctgt tcaacgcgat cgttaatccc ctcccttcat cccgcgcagt
     4141 gcgcgggatg attccagtaa attccataaa aacactaatt cagcgctata acacctgaaa
     4201 aaaaaagggc gatgaatctt tatatattct gaatattcac actctttaca ggaacttttt
     4261 agagcaatag gccatcagga gtatagtgat gcccgacaga agaagtgttc tgaatgaaag
     4321 cgactaactt aaggagtgag gaaagatgga aagtaatttc attgactggc atccccctga
     4381 catcattgca ggtttgcgca agaaaggaac gtcaatggcg gcggaatctc gcagaaatgg
     4441 tttgagttcc tcaacgctgg caaacgcatt atcgcgccca tggccgaaag gagagatgat
     4501 tattgcgaaa gccctgggaa ctgacccctg ggttatctgg ccatcacgct accatgatcc
     4561 gcagacccat gagtttatcg acagaacgca gttgatgcgt agctacacta aaccgaaaaa
     4621 atgagtggtc tggcggtagc cccgcgaacg gggctgccag ctctcagacg attactcgcc
     4681 tttcacacgc ttaatatttg cacctaaagc gcgcagtttg tcttcaatgc gttcgtagcc
     4741 acgatcgatg tgataaatac gatcaaccac cgtcgtccct tccgcaatac agccagccag
     4801 caccaggctt gctgatgcac gcagatcggt tgccataacc tgtgcaccag aaagtttttc
     4861 aacaccatga caaataacgg tattgctttc gatttcggca tgcgcgccca tacggctaag
     4921 ctccggcaca tgcataaagc ggttttcaaa gaccgtttcg gtgatgaatc cggtcccttc
     4981 tgccaccagg ttcaacagcg tgaactgggc ctgcatatcg gtcgggaatg ccggatgcgg
     5041 cgcggtacgt acgttaacag ccttcggacg tttgccatgc atatccaggc taatccagtc
     5101 ttcgccgact tcgatgtccg ctccagcgtc acgcagtttc gccagcacgg cgtcgagagt
     5161 atctggctgc gcgttacggc agataatttt gccgcgagaa atcgccgccg ccaccaggaa
     5221 agtaccggtt tcgatacgat ccggtagcac gcgatagaca ccgccgccta aacgttccac
     5281 accttcgatg acgatacgat cggtgccctg accgctaatt ttcgcaccca gcgtaatcag
     5341 gaagttcgcg gtatcgacga tttccggttc acgcgctgcg ttttcaataa tcgtggtacc
     5401 ttccgccagg gttgcagcac acatgatggt caccgttgcg ccaacgctga ctttatccat
     5461 cacgatatgt gcgcctttca gacgaccatc gacggaagct ttaacgtaac cttcttccag
     5521 tttgatggtc gcgcctaatt gttcgaggcc agaaatgtgt agatcaaccg gacgcgcacc
     5581 gatcgtacaa ccgccaggca gtgaaacttg cccctgacca aagcgcgcta ccagcggccc
     5641 cagtgcccag atagaagcac gcatggtttt aaccagatcg taaggtgcgc agaatacatt
     5701 aacgtcgcgg gcatcaatat gcacagaacc attacgttct actttcgcac ccagctgact
     5761 tagcagcttc attgatgtat cgacgtcttt cagtttcggg acgttctgga tctctaccgg
     5821 ttcttccgcc agtagagcgg caaaaaggat aggcagagca gcatttttag cgccggaaat
     5881 tgtgacttcg ccctggagct tcgttggccc ctgaacacga aatttatcca tttagtttgt
     5941 tctcagttaa caattcatat ccgctaccgg cgaatcgccc atagctcaaa agccgttcag
     6001 tttgcgatcg cgcgcccact ccgcaggggt atacgctttg atcgacacag catgaatgcg
     6061 gttatccgca atatattcca tcagcgggcc atagaccgtc tgctgttttt taacccgact
     6121 catgccgtca aacaactcac ccacggcaat aacctgaaag tggctgccat cgccggaaac
     6181 gtggacttcc tggagggaga gagcgttcat caacacgctc tgaatttcat tattttccat
     6241 gggatcttca atcatcagtt aataaaccag cgaaacatct tagagcaaag ttgcgctggc
     6301 ataaataagc aaaaagcctc gctgataaat cagacaaggc tcgacttgca ggcaggtttg
     6361 ccggacaggc ggttaacgcc atatccggcc tgaaaaaatt taacgaggca gaacatcagc
     6421 aggcaaatta tacaatttcg ccagggtata cactttgtcg tttaccccct gaagcgtcac
     6481 attgttgccc tgctttttcg ccagatcgat aagctggagc agcagtgcca gtccccccgt
     6541 atccacgcgg gacacacggc taagatcgat gcaggtaatc cccttcaccg cttcctcacg
     6601 catttcccaa agcggtagca aaacgtcctg atccagctct ccggataacg ccagcgtgtc
     6661 acccgtctgc atccagctca gtgactcgct cattattttt tctcttccag agtgattttc
     6721 tgttgagaaa tcgatttcag ttgcgcagtc aggccgtcga tacctttggt acgcagcagc
     6781 gttccccact cgttttgttt ggtggtgatc atactgacgc cttcagcaat catgtcgtaa
     6841 gcctgccagt tgcccgtctg ggagttttta cgccactgga agtccagacg caccggcggg
     6901 cggccattcg gatcaataat ggtaacgcga atcggcacaa tggttttatc gcccagcggc
     6961 tgttctggcg caatctgata ggtttgacca tgatacatcg ccagcgcctg accgtaagcc
     7021 tgcttcaggt actcacggaa agcggcaaag taggcttcac gttgagcagg ggtcgcactc
     7081 ttgtaatact ggcccagcac cagcgcaccg gcgtatttca cctgtacgta tggcagcagt
     7141 tcctgatcaa caatggtacg cagataatcc gggttggccc gaatttgcgg ttgctcattc
     7201 ttcaggcgat cgaacgtttt ctgcgccgcc tcgtccatca gcttataagg attggtctgg
     7261 tctgccgcgg ttgccgcact cagcggtgca atcaccagca aagcgaccat cattaaacgt
     7321 ttaaacatgc gtcggttctc ctgaaattat ttcgttgtac ccacaggttc agtggtttca
     7381 ttattacctg gcgcagcagc tggcgcatcg ccactattct tattgtcatc gcctttacta
     7441 ccgtaaagga actgaccaat gagatcttcc agcaccatcg cagacttagt gtcctgaatt
     7501 gtatcgccat ccttcaggat agcagtcccc agttccgggt cttcaaaacc gacgtttaat
     7561 gccagatatt gttcccccag taggccggaa gtacgaatgc tcagcgaact ggtatctgga
     7621 atgtggttat aacgttgttc aatttccagc gttacgcgtg gcagataggt tttcgggtcc
     7681 agcgtaatat ccgccacccg gcccacaaca acgccaccaa tactgaccgg agagcgcgct
     7741 ttcaggccgc caatgttatc gaacgtcgca taaagcgtgt aggtcggttc agtacgtatg
     7801 gacgtcacgt tcgccgcctt caggcaaaca aacagagccg ccagcagtgc tgctaataaa
     7861 aagataccca cccaaatttc attttttttc gtttgcatgt actcaattcc caaacatcaa
     7921 tgcggtcagc acaaaatcca gccccagaac agccagagac gagtggacaa cggtgcgagt
     7981 ggttgcccgg ctaatcccgg cagacgtcgg gatggcgtcg tagccgttaa acaacgaaat
     8041 ccacgtcacc gtgatggcga acaccacgct cttaatcaga cagttgacca gatccatacg
     8101 ccagtcgacg gcattttgca ttgccgacca gaagaacccg ctatcaatgc ctttccaact
     8161 gacgccgacc agagatccgc cccagatccc cacggcgacg aaaataaccg tcaacagtgg
     8221 taatgaaata accccagccc agaaacgggg agaaataacc cgacgcagcg gatccaccgc
     8281 catcatctcc atactggaga gttgctctgt agcgcgcatc aggccgattt ctgcggttag
     8341 cgccgaacca gcacgcccgg caaacaacaa cgcggcaacc accggcccca gttcacgcag
     8401 tagcgataac gccaccagca tacccagact ggtttccgca ctataagtgg tcagaaccag
     8461 ataaccttgc agccccaaca ccattccgat gaacacgcca gaaaccacaa taatcagcat
     8521 cgacaggacg ccgacattat agagctggcg caccagcagc ggcgcatgtt tgcgaaattc
     8581 cggtttgccg accagcgcat tgaataacat taacccggcc cgcccgaacg ttctcagggt
     8641 tttaatccct ttatgtccga gcgacgccag cgcatttaac agcatgagtg gcttaactcc
     8701 ctggtaaaag atcagcgtga taatcgccgg caggatagcg gaacggaaca ggcccgtcag
     8761 ctatcccgtc cagaaactga cgtacgcgcg gatcaggatt cgcctgcaac gcctgggcac
     8821 tgccatgagc gacaattttt ttgtccgcca ggatccaggc gtgatccgca atacttaaca
     8881 cttccggcac atcgtgagaa accaccacac aagtcacgcc cagcgcgctg ttcagctcag
     8941 aaatcagctt caccagtacg cccatggtga tgggatcttg cccaacaaaa ggttcatcaa
     9001 acatgatgag atccggctcc agcgcaatcg cacgcgccag cgctgcacgc cgcgccatcc
     9061 caccggaaag ttcagaaggc attagtttag ccgctccacg cagccccacg gcctccagct
     9121 tcatcatcac cgtactatgc aacaatggcg cgggaagttg ggtatgttcg cgcagtggat
     9181 aggcgacgtt gtcaaatacg ttcatatcag tgaacaacgc cccggactga aataacatgc
     9241 tcatccgttt gcgcactgta tacaggcgcg aacgagacat cgccggaata ttctcaccat
     9301 cgaaaaggat ctcaccatga tctggtgcga tttgcccgcc aatcagacgg agtagcgtcg
     9361 ttttaccgat gcccgatggc cccatgatcg ccgtgatctt ccctcgcggc acggtcaggg
     9421 aaatattatc gaagatgcag cgattgccac gcgtaaaact gacatcgcgc atatcgacta
     9481 aattcgccac agactgctcc ataattcacc cttcgtcttg cgttgatttt ctaagcatgg
     9541 cgctcaattt aaccttgaac ccaacatatt tacagaatat tacccgccgt ggttagcgaa
     9601 agctggcatt tgttttactt tttagccgca taaagtcaaa attaagaatc cgttacggct
     9661 ttctgaaaat cttcagcgga ccggcgagta tacctgaaga aaggacgtta gatgctttta
     9721 gctacggcac tgttaattgt tggtttactt ttggtcgttt acagtgccga ccgcctggtt
     9781 tttgccgcgt ctattctttg ccgaaccttt ggcatcccgc cgctgatcat cggcatgacg
     9841 gtggtcagta ttggtacatc gttaccagaa atcatcgtct cgcttgccgc gtctctgcac
     9901 gaacaacgcg atttagccgt tggtacagcc ctcggctcaa acattatcaa tattttgctg
     9961 atcctcggtc tggctgcgct ggttcgtcct tttaccgtcc attccgatgt tctgcgtcgt
    10021 gaattaccct taatgttgtt ggtcagcgta gtggccggtt ccgtactcta tgacggacaa
    10081 cttagtcgca gcgatggtat ctttctcctc tttctggctg tgctatggct gctgttcatt
    10141 gttaaacttg cacgtcaggc tgaacgtcag gggactgaca gcctgaccag agagcagctt
    10201 gcagagctgc cgcgtgacgg cggattgccc gtcgcgtttt tatggctcgg cattgcgctt
    10261 atcatcatgc cagtggccac gcggatggtg gttgataacg ccacggtgct ggcgaattac
    10321 tttgccatca gcgagttgac gatgggtctg acggcaattg ctatcggaac cagcctgccg
    10381 gaactggcaa ccgcaatagc gggggttcgc aaaggtgaaa acgacattgc tgtcggaaat
    10441 atcattggcg caaacatttt taatattgtc atcgtgttgg gtttacccgc gctgataaca
    10501 ccaggagaga ttgatccatt ggcgtacagt cgtgactaca gcgtgatgtt gctggtgagc
    10561 attatttttg cgttgctgtg ctggcggcgc tccccgcaac cgggccgtgg tgtaggggta
    10621 ttattaactg gcggatttat cgtatggctg gcgatgttgt actggttatc gccaatactc
    10681 gttgaataac tggaaacgca ttatgtcgca cgtagagtta caaccgggtt ttgactttca
    10741 gcaagcaggt aaagaagtcc tggcgattga acgtgaatgc ctggcggagc ttgatcaata
    10801 catcaatcag aatttcacgc ttgcctgtga aaagatgttc tggtgtaaag ggaaagttgt
    10861 cgtcatgggg atggggaaat cggggcacat cgggcgcaaa atggccgcaa cgtttgccag
    10921 caccggtaca ccttcatttt tcgtccatcc tggtgaagcc gcgcatggtg atttaggcat
    10981 ggtcacccca caggatgtgg tgattgctat ctctaactca ggtgaatcca gcgaaatcac
    11041 ggccttaatt ccagtgctta agcgtcttca cgtaccgtta atctgcatca ccggtcgccc
    11101 ggagagcagc atggcgcgcg ccgcagatgt gcatctgtgt gttaaagtag cgaaagaagc
    11161 ctgtccgtta gggctggcac cgaccagcag caccaccgcc acgctggtta tgggcgatgc
    11221 cctcgctgtc gcgctgttaa aagcacgcgg ctttactgct gaagattttg cgctctcaca
    11281 cccaggcggc gcactgggtc gtaaacttct gctgcgcgta aacgatatta tgcatacggg
    11341 cgatgagatc ccgcatgtta agaaaacggc cagtctgcgt gacgcattgc tggaagttac
    11401 ccgcaaaaat cttggtatga ctgtcatttg cgatgacaat atgatgattg aaggcatctt
    11461 taccgacggt gatttacgcc gtgtcttcga tatgggagtg gatgttcgtc agttaagtat
    11521 tgccgatgtg atgacgccgg ggggaatacg cgtgcgccct ggcattctgg ccgttgaggc
    11581 actgaactta atgcagtccc gccatatcac ctccgtgatg gttgccgatg gcgaccattt
    11641 actcggtgtg ttacatatgc atgatttact gcgtgcaggc gtagtgtaaa gattcaagga
    11701 taaacaacaa tgagcaaagc aggtgcgtcg cttgcgacct gttacggccc tgtcagcgcc
    11761 gacgttatag caaaagcaga gaacattcgt ctgctgatcc tcgacgttga tggcgtactg
    11821 tcagatggcc tgatttatat gggcaataac ggcgaagagc tgaaagcgtt caatgttcgt
    11881 gacggttatg gcattcgttg tgcgctcacc tctgatattg aagtcgctat cattaccggg
    11941 cgaaaggcta aactggtaga agatcgttgt gccacattgg ggatcactca cttgtatcag
    12001 gggcagtcaa acaaactgat cgcctttagc gaactgctgg aaaaactggc gattgccccg
    12061 gaaaatgtgg cttatgtcgg cgatgatctc atcgactggc cggtaatgga aaaagtgggt
    12121 ttaagcgtcg ccgtggccga tgctcatcca ctgttgatcc cgcgcgccga ttatgtgacg
    12181 cgcattgctg gcggtcgtgg cgcagtgcga gaagtttgcg acttattact cctggcgcag
    12241 ggcaaactgg atgaagccaa agggcaatcg atatgagtaa agccagacgt tgggttacca
    12301 ttgtgctatc actggcggtt ctggtgatga tcggcattaa tatggccgaa aaagacgata
    12361 ccgcccaggt ggtcgtcaac aacaatgatc ccacctataa aagcgagcat acggacacgc
    12421 tcgtctataa cccagaaggg gcactaagct atcgattgat tgctcaacac gttgaatatt
    12481 attccgatca ggccgtttcg tggtttacgc agccggtact taccacgttt gataaggata
    12541 aaatcccgac atggtccgta aaagcagata aagccaagct gaccaatgac cggatgctct
    12601 atttatatgg acacgttgaa gtcaacgcac ttgtgccgga ctctcaactt cgcagaatca
    12661 cgacggataa cgcgcagatc aatctggtga cgcaggatgt tacctctgaa gacctcgtca
    12721 cgttatacgg aacaacattt aactccagcg gtctgaaaat gcgcggcaac ttacgcagca
    12781 agaacgccga gctgattgaa aaggttagaa catcctatga aattcaaaac aaacaaactc
    12841 agccttaatc ttgtgcttgc cagctcactt ctggccgcca gcattccggc atttgccgta
    12901 accggagaca ctgatcagcc gatccacatt gaatcggacc agcaatctct tgatatgcaa
    12961 ggcaacgtgg ttacctttac cggtaatgtc atcgtcaccc agggcaccat caaaattaat
    13021 gccgacaaag tggtcgttac ccgtccgggc ggcgaacaag gtaaagaagt gattgacggc
    13081 tacggtaaac cggcaacgtt ctaccagatg caggacaacg gtaaacccgt tgaaggtcat
    13141 gcttcccaga tgcactacga actggcaaaa gattttgtcg ttctgacggg taatgcttat
    13201 ctgcagcagg tcgatagcaa cattaagggc gataagatca cttacctggt gaaagagcag
    13261 aaaatgcagg ctttcagcga caaaggcaag cgcgtaacaa ccgttctggt gccgtcgcag
    13321 ctgcaggaca aaaacaacaa aggccagacc ccggcacaga agaagggtaa ttaattcgtt
    13381 atggcaacat taactgcaaa gaaccttgca aaagcctata aaggccgtcg cgtggtagaa
    13441 gacgtcagcc tgaccgtcaa ctccggggaa attgtcggtc tgctggggcc aaacggtgcc
    13501 ggtaagacca ccactttcta tatggttgtt ggcattgtgc cgcgcgatgc gggcaacatc
    13561 attattgatg atgacgatat cagtctgctg cctctgcatg cacgcgcgcg ccgcggtatc
    13621 ggctatctgc cacaggaagc ctccattttc cgtcgcctca gcgtttacga taacctgatg
    13681 gcggtactgc aaattcgtga cgacttgtct gctgaacaac gtgaagaccg cgcgaacgag
    13741 ctgatggaag agtttcacat tgagcacctg cgtgacagca tggggcagtc actctccggg
    13801 ggtgaacgtc gccgtgtaga aattgcccgc gcactggctg cgaatccgaa atttattcta
    13861 ctcgacgaac cgtttgccgg ggttgacccg atctcggtta tcgacattaa acgcatcatt
    13921 gaacacctgc gcgacagcgg cctgggcgta ctgatcactg accacaacgt gcgtgaaaca
    13981 ctggcggttt gtgaacgcgc ttatatcgtc agtcaggggc atttgattgc ccacggcacg
    14041 cctacagaaa tcttacaaga cgaacacgtt aagcgtgtat accttgggga agacttcaga
    14101 ctctgatagg gtagaagttt gcgacgtttt agcaggagag tacgattctg aacatgaagc
    14161 aaggtttgca actcaggctt agccaacaac tggcgatgac gccacagctt caacaggcga
    14221 ttcgtctgtt gcagttgtcg acgctggaac ttcagcagga gctacagcag gcgctggaga
    14281 gtaatccgct gcttgagcaa atcgacactc atgaagaaat cgacaccagc gaaacgcaag
    14341 acagtgaaac gctggacacc gccgacgcgc tcgaacaaaa agagatgccg gaagagctgc
    14401 cgctcgatgc cagttgggac accatttaca ccgctggtac accatccggc accagcggtg
    14461 actacattga cgatgagctg ccggtctatc agggcgaaac gacgcagacc ttgcaggatt
    14521 acctgatgtg gcaggtcgag ctgacaccgt tttccgacac tgaccgcgct attgctacct
    14581 ctatcgtcga tgccgttgat gacaccggtt atctgactgt cccgctggaa gatattctcg
    14641 aaagtatggg cgatgaagag atcgacatcg acgaggttga agccgtcctt aagcggatcc
    14701 aacggtttga tccggtcggt gtagcggcaa aagatctgcg tgactgcctg ctaatccaac
    14761 tctcccaatt cgataaaacc acgccgtggc tggaagaggc cagactgatc attagcgatc
    14821 atctcgatct gttagccaat cacgacttcc gcactttaat gcgcgtcacg cgtctgaaag
    14881 aagatgtgct gaaagaagcc gtcaatctga tccagtcgct cgatccgcgc cccgggcagt
    14941 cgatccagac tggcgaacct gagtatgtca ttccagatgt gctggtgcgt aagcataacg
    15001 gtcactggac ggtagaactc aacagtgaca gcattccgcg tctgcaaatc aaccagcact
    15061 acgcctcgat gtgcaataac gcgcgcaacg atggtgacag ccagtttatc cgcagcaatc
    15121 tgcaggatgc caaatggttg atcaagagtc tggaaagccg taacgatacg ctactgcgcg
    15181 tgagtcgctg tatcgttgaa cagcagcaag ccttctttga gcaaggtgaa gaatatatga
    15241 aaccgatggt actggccgat atcgcccagg ctgtcgaaat gcatgaatcg acgatatctc
    15301 gcgtgaccac gcaaaaatac ctgcatagtc cacgaggcat ttttgaactg aagtatttct
    15361 tttccagtca cgtcaatacc gagggcggcg gcgaagcttc ctccacggcg attcgtgcgc
    15421 tggtgaagaa attaatcgcg gcggaaaacc cagcgaaacc gttgagcgac agcaagttaa
    15481 cctctttgct gtcggaacaa ggtatcatgg tggcacgccg cactgttgcg aagtaccgag
    15541 agtctttatc cattccgccg tcaaaccagc gtaaacagct cgtttgaccc aaccgataag
    15601 gaagacacta tgcagctcaa cattaccgga aataacgtcg agatcaccga ggcactgcgc
    15661 gaatttgtta gagccaaatt tgccaaactt gagcaatatt ttgaccgaat caaccaggtc
    15721 tatgttgttc tgaaagtgga gaaagtcacc cacacctcag atgcaacact gcatgtaaac
    15781 ggtggtgaaa ttcatgccag cgcggaaggt caggacatgt acgctgccat tgatggctta
    15841 attgataagc tggcacgcca gttgaccaaa cataaagata aactgaaaca acactaattg
    15901 tccgggcaat tagcatgtgc atggcggcct gttgtgcggc acaacgggcc atttgtacgg
    15961 ttaatgctcc gagcctgttc cactgtttga gtgggcaggt tcttaggtga aattatgaca
    16021 aataatgata caactctaca gcttagcagt gttcttaaca gggaatgtac gcgaagccgc
    16081 gttcactgtc agagcaaaaa acgcgccctg gaaatcatca gcgagctggc ggcgaaacaa
    16141 cttagcctgc cgcctcaggt ggtttttgaa gctatcctga cgcgggaaaa aatgggcagt
    16201 accggtatcg gcaatggtat tgccattccg catggcaaac tggaagaaga tactctgcgc
    16261 gccgttggcg ttttcgttca gctcgaaacg cctatagctt tcgatgccat cgacaaccaa
    16321 ccggtggact tactttttgc cctgctggtg ccggcagacc aaactaaaac gcacctgcat
    16381 actctgtcgc tggtggcgaa acgtctggcg gacaaaacca tctgccgccg tttacgcgca
    16441 gcccagagcg atgaagagct gtatcaaatc attacggata ccgaaggtac tccggatgaa
    16501 gcgtagttat tcggtaatgt ctcttttaga cgttgtgagg agaaacagta catggtactg
    16561 atgatcgtca gcggacgttc aggttcaggt aaatctgtcg ccctgcgtgc gctggaagat
    16621 atgggttttt actgcgtgga taaccttccc gtagtgttgt tacccgatct ggctcgaacc
    16681 ctggccgatc gcgagatttc tgccgccgtc agcattgatg ttcgtaatat gccggagtca
    16741 ccagaaatat tcgaacaggc gatgagtaac ctgcctgacg ctttctcacc gcaactcctg
    16801 ttcctggatg ccgaccgtaa taccttaatt cgtcgttaca gtgacacgcg ccgactgcat
    16861 ccgctttcca gcaaaaacct gtcgctggaa agtgctatcg acaaagaaag cgatttgctg
    16921 gagcctctgc gttcgcgagc ggatctgatt gtcgatacct cagaaatgtc cgttcacgag
    16981 ctggctgaaa tgctgcgtac ccgtctgctg ggtaaacgtg aacgcgaact gaccatggtc
    17041 tttgagtctt tcggcttcaa acacggtatc cctatcgatg cagattacgt ctttgacgtg
    17101 cgcttcttgc cgaacccgca ctgggatccg aaactgcgtc caatgacagg tcttgataaa
    17161 cctgtcgccg cgttcctcga ccgccacaca gaagtacaca attttatcta ccagacgcga
    17221 agctatcttg agctatggtt acctatgctg gaaaccaaca accgtagcta cttgacggtc
    17281 gccattggtt gtaccggcgg gaagcaccgt tcggtgtata ttgcagagca actggcagac
    17341 tacttccgct cgcgcggtaa aaacgtccag tcacgccatc gtacgctgga aaaacgtaaa
    17401 ccatgaccgt caagcaaact gttgaaatca caaacaagct gggcatgcat gcccggcctg
    17461 caatgaagct gtttgaatta atgcagggtt ttgacgctga agtgctgtta cgtaatgacg
    17521 aaggcaccga ggccgaagcc aacagcgtta ttgcgctgct gatgttggat tctgccaaag
    17581 gacggcagat tgaagttgaa gcgaccggcc cacaggaaga ggaagcactg gccgccgtta
    17641 tcgccctctt taactctggt tttgatgaag attaatcttc atcactttga catacaactc
    17701 ccttcaaact ccccccgaca ataagaaaat cacgtactga aatcgttctc aatcaacgtc
    17761 atttgtacat tttgtgcgct tttcactttc agaagaacct taagaaaacc ttaagaggca
    17821 ttgtttaggt tttgtttaag ttaatcgacc atactggaga tcgtcagaaa atatttccag
    17881 gagatggcat gattcgctta tctgaacaaa gtcccctggg caccggaaga catcggaaat
    17941 gttatgcgca tccggaagat gcccaacgct gtatcaagat tgtctaccat cgtggcgatg
    18001 gtggcgataa agagatccgc cgtgagttaa agtactacgc gtatcttggt cgccggttaa
    18061 aagactggag tggaataccg cgctatcacg gtaccgttga gacggattgc ggaaccggtt
    18121 atgtctacga tgtgattgca gattttgacg gcaaaccctc cattacgctg accgaatttg
    18181 ctgaacaatg ccgttacgaa gaagacattg cacaactgcg ccagctactg aaacagctga
    18241 agcgttattt gcaggataac cgtatcgtga cgatgtcgct gaagccgcag aatatcctct
    18301 gccaccacat cagtgagtca gaggttatcc cggtcgtctg cgacaacatt ggtgaaagca
    18361 cattgattcc actggcgacc tggtcgaagt ggtgttgtct gcgtaagcaa gagcggttat
    18421 ggaaacgatt tatcgcccaa ccggcgctgg ctattgccct gcagaaagat ctgcaacctc
    18481 gtgagagcaa aacgctggcc ctcacttcgc gcgaagctta atccagctgg tgttgttgca
    18541 taaacggctc accgcctaac tgatacatct gccgtaaaat ccacgcctga cggctacgca
    18601 cgtagcccga tggcgaggag actttgaaac gaagtggatt aggtaataca gctgccagta
    18661 atgcagcttc cgaccgggta agtttgctcg cgggtttgtg gaaataacgt tgtgccgcag
    18721 cttcgacgcc aaacacaccg tcgccaaatt cggcgatatt caggtaaacc gtcaggatac
    18781 gctttttgct ccagactgtt tctatcccca gcgttaatcc agcttccagc ccttttcgta
    18841 cccagctacg cccatcccat aaaaagagat ttttggccgt ctgctgagaa atcgttgaag
    18901 caccgcgaat acggttttca ttgcgctcgt tgtgcgccag ggctttctca atggaagcga
    18961 catcaaagcc ccggtgctca ggaaatttct gatcttctgc ggcaatcacc gccagtccca
    19021 tccacggcga gatttgatcc atactgaccc agtcagaatg tgccacgtaa cgaaaattgc
    19081 catgcagcca ggcgctgacc tgtcgctcga ccattaccgc tgagaaggga acaggcgcaa
    19141 cactaaacaa cgcgatgccc ccgccccaga aaacggcgag gacaaccatt aaccgcaaaa
    19201 gaaaacggcg aacgaaacta aacaccgtta agcggctttt actcattcag ccagaaccag
    19261 cacgcgggaa accagcttat caatgccgct cgccgcttct gcaatgttct gcgccagcat
    19321 atatgctggg gtggtgacaa tcttattgtc ttcatcaacc acgatatcat cgacaggaca
    19381 gggcacatgc tccgcgccca tctcttccag cacttctgcg gtatcgatat cagtaccgat
    19441 ggtcaaacgc agcgggaaat cgaaaatttt cggcagcatc gccggggcaa tacacataaa
    19501 accaagcggt tttccggcct gatgcatcgc ttgtgccagc gcctttaatt cacggtcaac
    19561 ggtgcattcg ctaccaagag tggcaaaatt gcttaaattc ttcgccgcgc caaacccccc
    19621 cggcacaatc aacgcatcca gttcagcggc atcggcctgg gccagaggac ggatttcacc
    19681 gcgcgttatt cgtgccgctt caatcagcac gttgcgcgtt tccgtcatcg cttcgccagt
    19741 taaatggttg ataacatcaa cctgctgctt atcaggtgca aagcagaccg cctgcgcacc
    19801 gctgcgtgaa atagctaaca acgtcaacac cgcttcatga atttcagaac cgtcatagac
    19861 gccgcatccg ctcagaatta cgccaatttt cttcattgtg atcatccttt cgcaattgac
    19921 tgaaacacat taattttttt aataaaaatg gtacgcatca cacatttaac tgattcatgt
    19981 aacaaatcat ttaagttttg ctatcttaac tgcgtgcggc ctgaaaaaca gtgctgtgcc
    20041 cttgtaactc atcataataa tttacggcgc agccaagatt tccctggtgt tggcgcagta
    20101 ttcgcgcacc ccggtctagc cggggtcatt ttttagtggc ttttgccacc cacgctttca
    20161 gcacttctac gtcgtgacgc cactcttctt tcatctcttc aatccattca ccgacgttat
    20221 cttcccaggc aggaaggtca ggagactgaa tttgctgacc cagctgttgc agatggcgta
    20281 accccactga ccccgccgca cctttaattt tatgtccttc ctcaacaatg ccttttttat
    20341 cctgcgccgt cagattcgac tccagcacgc tgacatagcc cggcatcatc ttctcaaaca
    20401 ccgctaaccc gtcggtgatc agcttcggtc ctacaagttc gagatactgt tccagcatgg
    20461 gaatatcgag caatgcttct gatttactgt tctcttctgt cgtcaccgta ctctcctcat
    20521 catcctgggt atcccagaat ttcttgatca tcgcggttag cgccggaacc gaaagcggct
    20581 tactcagcac atcatccatt ccagcattga ggtactcttg tttgtctttc agcacgttag
    20641 cggttaaggc caccagcggc ggtaaatcct cgcgcggata acgcttcgtc agttcacgag
    20701 agatatccag cccggtcata tctggcaact gaatatccag caacaccagg tcgtattcgc
    20761 ccggtttaaa catctccagc gccgccttgc cggtcatggc gacatcaacg ctgttaccta
    20821 atttttccag cacagaacgc gcaacaatca cgttcagttc aatgtcttcc accagcagca
    20881 cattcagcgc cggtaaaggc atatcgtctt catcaaacgc atcatcgacc tcttctgcta
    20941 ccgacggtgc gtggatcgtc aacgtaaagg ttgaaccttt gccctgttcg ctggtaaccg
    21001 taatatcgcc gcccatattt ttcgccagac gacgagaaac ggccagacca ataccggtgc
    21061 cggtggcagg tttaccgcca tgactgtctt tcacctggta atacatggcg aaaattttat
    21121 ccagctcatc ctgcggaatg ccgataccag agtcttccac ttcaaaatgc agcatatcgc
    21181 cttcatcgta gcgcacgcgc acggtaacct ggccttgctg ggtgaatttg acggcgttac
    21241 tgatgaggtt ccacaggatc tgccgtaaac gcgtcccgtc ggtaatgacc tgatgcggta
    21301 atggcagcgt cggctccagg ttaaagcgca atcctttttg ttgcgcctgc aatgcggaga
    21361 gattttccag atcggcaagg aagctggtga aatcaaccgg ttgattatca agctggacct
    21421 tgcgccgttc catcttatcc atgtcgataa tatcgttaaa gatattcccc agcgtgacgg
    21481 ccgaaacatg gatggtcttg agatattttt cctgctcggc ggtgagttcg gtatccagca
    21541 gaatgcggct cagaccgacg ataccgttca gcggtgtacg caattcgtga ctgatggtgg
    21601 agataaacgt cgttttgtcg cggctggccc gttcaagcgc atcctgatac cgcttacgct
    21661 cggtaatgtc gcgaccaaag cccatcaaac cgtgacgttt acccacgcgg tcgtagtacg
    21721 gcactttacg gatttcaaag caggctttgc gcccgtccgg gtaatccagc cactgttcat
    21781 aggtcagtga cacattatga cggaacactt tttcatcggt ttcaatgact tttgcggcgg
    21841 cttccggtga gtaaacatca gcaggtttca ggtgaaccag ttgtttttcg ctttttccgg
    21901 tcagcagctc catcgcgcgg ttacagccgg aaaactcttt atcttcgtta cgataaaaaa
    21961 ccaggtcggg tgaagcatca aggaaggaac gtaagaatga ggattgctgc tcgagctgaa
    22021 tttgtgtctc ttcgcgctct ttgatttcaa ttttcagttg gccgaaggtt tcctgcagtt
    22081 ctgcttccgc tttttcacga acggcaattt cctgatttag ctgggcaata ttatctttta
    22141 actgaacgtt gaggctcaaa tcgcgctcgc gcatctcctc cagtttttgc accagccgtg
    22201 acagacgttg tcgtgactcc tccagttgct cgacgaccac cgatagaaag tagaccgccc
    22261 acggcgtaat cagcaaacca aagaagatag aacgaataac atcaatgctt tcgacctgac
    22321 catgcagcac catggttacc gccatttgta ccacaatggc aagaacgacg agggccagcg
    22381 ccagcaacat tgagaagcgc accagaccta acttcatcat caggtcaaca taatactgcg
    22441 ccagcagacg aatttgcttc attagggaat tccttcacga caacctgccc caataatacc
    22501 caattctgac agttacgtta taaattgtgt gagaaatgcg gaattcccct caacgaccta
    22561 ctccgttgga ggtagccacg gacgtcccag cgccgatccc tgtacgccat gttcattcag
    22621 atagcgatcc agctcgacca ttcccgtcca tcgattttcg caccacagcg gagcaagcag
    22681 cgtcgggcga cgggcgctgg cggaaatgcg gtggtagatc acttccggtg gcgtatggcg
    22741 aatcatttct ccggcagtga gcgtgtaatc ctccagttca ataccgttca aacgccccgc
    22801 ttcccaggct ttcgccataa tgctgccttt cacaatatgc agcggatgca gctttatgcc
    22861 gtccacgccg gtttcaacca ctcgctccag cgtttgcaaa cattcagcct gcccttcacc
    22921 aggcaggccg acaattaagt gggaacacac cttcagcccg cgctgacgtg ccagctgggt
    22981 tgtacgctga taacaggcaa aatcatggcc gcggttgatg cgatgcagtg ttttgtcgtg
    23041 ggcggtttgt agccccagct ccagccacac ttcgtaaccc tggtccttat attcgcaaag
    23101 cagatccagc accgcatccg gcacgcagtc cgggcgggta ccaacacaca aaccgacaat
    23161 attggcctgg ctcaccgcct gctgatacat agaacgcagc acctgaactt ccgcaaaggt
    23221 gctagtatac gcctgaaagt aggccagata gcgtttagcg cggttaacta aattcgcctg
    23281 gtgcgccagt tgctcggcaa tggaacgatg ctgctgcgct tcatcggcaa acgaggcaac
    23341 attacagaat gtgcagccac cacgcccgat ggtaccgtca cggttagggc agctaaaacc
    23401 gccgtgcagc gtcagcttat gcaccttttg cccataacga cgggtgagat caccaccaaa
    23461 catattgact aatttctgta actgcataat ctgatagacc gcgccttgaa aagaggccaa
    23521 agcctgccat ttttagctca attcggcgat gacctggatc aatcgtcccg gcctgctttt
    23581 atcaactgca taatcaatca aaattaccga aatttcatgc ataatcacat aaatcacttt
    23641 tgcttatctt gtgtcagatt tttttatctc cttatggatt ttaggcaaaa acagtagcat
    23701 gaaacgtcat taccaattaa ggcagtataa aatgctggtt ttctcgtcag ttcaaggtag
    23761 gataagggtt aacacgcctt tatgacagtc aggaattgac tgtttctcta acgacttccc
    23821 ttttagcctt aaagataaaa ttcattttaa tttcagttac ttaataaaga attttgcgct
    23881 aaagcacatt tctgtaccaa taagcttgcc atttgacctg tatcagcttt cccgataagt
    23941 tggaaatccg ctggaagctt tctggatgag cagcctgctc atcatattta tgcagtaatt
    24001 gagatcccct cttcaccgta ttaaccgatg cgaaaaggac aacaaggggg cgaatacgag
    24061 gcgcgcgtat gacacgcaac ccccgtcgcc acgctctttc tgtgcccgtg cgcagcggtt
    24121 cggaagtggg gttcccgcag agcctggggg aggttcacga tatgttgtac gataaatccc
    24181 ttgagaggga taactgtggt ttcggcctga tcgcccacat agaaggcgaa cctagccaca
    24241 aggtagtgcg tactgcaata cacgcactgg cccgcatgca gcaccgtggc gcgattctcg
    24301 ccgatggtaa aaccggtgac ggttgcggct tgctgttaca aaaaccggat cgcttttttc
    24361 gcatcgttgc gcaggagcgc ggctggcgtt tagcaaaaaa ctacgctgtc gggatgctct
    24421 tcctgaataa agatcctgaa ctcgcggctg ccgcacgccg catcgttgaa gaagagctgc
    24481 aacgcgaaac cttgtcgatt gtgggctggc gtgatgtccc cactaacgaa ggcgtgctgg
    24541 gtgaaatcgc cctctcctct ctgccccgca ttgagcaaat tttcgttaac gctccggcag
    24601 gctggcgtcc gcgggatatg gagcgccgtc tgtttatcgc ccgccgccgc attgaaaagc
    24661 gtctcgaagc cgacaaagac ttctacgtct gtagcctgtc gaatctggtg aacatctata
    24721 aaggtctgtg tatgccggcg gatctgccgc gcttttatct ggatcttgcg gacctgcgtc
    24781 tggaatcggc catctgcctg ttccaccagc gcttctccac taacaccgta ccgcgctggc
    24841 cgctggcgca gccgttccgc tacctggcgc ataacggtga aatcaacacc atcaccggta
    24901 accgccaatg ggcgcgtgcg cgtacctata aattccagac gccgcttatc cctgatctgc
    24961 acgacgccgc accgttcgtc aacgaaaccg gctctgactc cagttcgatg gataacatgc
    25021 tggaactgct gctggcaggc gggatggata tcatccgcgc catgcgtctg ttagtgccac
    25081 ccgcctggca gaacaacccg gatatggacc cggaactgcg tgccttcttt gactttaact
    25141 ccatgcatat ggagccgtgg gatggcccgg cgggcatcgt gatgtccgac ggtcgttttg
    25201 ccgcctgtaa cctcgaccgt aacggtctgc gtccggcgcg ctacgtcatc accaaagata
    25261 agctcatcac ctgcgcctct gaagtcggta tctgggatta ccagcctgac gaagtggtcg
    25321 aaaaaggccg cgtcgggcca ggcgaactga tggttatcga cacccgcagt gggcgtattc
    25381 tgcactcggc agaaaccgat gacgatctga aaagccgcca tccatataaa gagtggatgg
    25441 agaaaaacgt ccgccgactg gtaccgtttg aagatctgcc cgatgaagaa gtgggtagcc
    25501 gcgaattgga cgacgacacg cttgccagct accagaaaca gtttaactac agtgcggaag
    25561 agctggactc cgtaattcgc gtactgggcg aaaacggtca ggaagcggtc ggttcgatgg
    25621 gcgatgatac cccattcgcc gtgctctcca gtcagccgcg cattatttac gactacttcc
    25681 gccagcagtt tgcccaggtg actaacccgc caatcgaccc gctgcgtgaa gcgcatgtta
    25741 tgtcgctcgc caccagtatc ggtcgtgaaa tgaacgtctt ttgcgaagca gagggccagg
    25801 cgcaccgttt aagctttaaa tcgccgattc tgctctactc cgatttcaaa cagctcacga
    25861 cgatgaaaga ggagcactac cgcgcagata cgctggatat cacctttgac gtcactaaaa
    25921 ccacgctcga agcgacagtc aaagagctgt gcgacaaagc cgaaaaaatg gtacgtagcg
    25981 gcaccgtgct gctggtgctc tccgaccgga atatcgctaa agatcgcctg ccggttccag
    26041 ccccgatggc ggttggcgcg atccagaccc gtctggtcga tcaaagcctg cgttgcgatg
    26101 ccaacatcat cgtcgaaacc gccagcgccc gcgatccgca ccacttcgcc gtgttgctgg
    26161 gcttcggcgc gacggctatt tatccatacc ttgcctatga aacgctgggc cgcctggtag
    26221 acacccatgc gattgccaaa gattatcgta ccgtgatgct caactaccgt aacggcatca
    26281 acaaaggctt gtacaaaatc atgtccaaaa tgggcatctc caccatcgcc tcttaccgct
    26341 gctcgaaact gtttgaagcg gtcggtctgc acgatgatgt agtgggcctg tgcttccagg
    26401 gggcggtcag ccgcattggt ggggcgagct ttgaagactt ccagcaggat ctgctgaacc
    26461 tgtcgaaacg tgcctggctg gcgcgtaagc ccatcagcca gggcggcctg ctgaaatacg
    26521 tccacggcgg cgaataccac gcttacaacc cggacgtggt gcgcacgctg caacaggcgg
    26581 tacaaagcgg cgagtacagc gactatcagg aatacgcgaa gctggttaat gagcgtccgg
    26641 caaccacgct gcgcgatctg ctggcaatta cgccgggtga aaacgcggtc aacattgctg
    26701 atgttgaacc ggcaagcgaa ctgtttaaac gctttgatac cgccgcgatg tctatcggcg
    26761 cgttaagccc ggaagcccac gaggcgctgg cggaagcgat gaatagcatc ggcggtaact
    26821 cgaactccgg tgaaggcggc gaagacccgg cgcgctatgg cactaacaaa gtgtcgcgca
    26881 tcaagcaggt ggcttctggt cgcttcggcg ttactccggc gtatctggtc aatgccgacg
    26941 tcattcagat taaagtcgcc cagggcgcga agccgggcga aggcggtcag ttgccgggcg
    27001 acaaagtcac tccttacatc gccaaactgc gctattcggt gcccggagtg acgctgatct
    27061 ccccgccgcc gcaccacgat atctactcta tcgaggactt agcgcagctc attttcgacc
    27121 tcaagcaggt taacccgaaa gcgatgatct ccgtgaagct ggtttccgaa ccgggcgtag
    27181 gcaccatcgc gactggcgtg gcaaaagctt atgccgattt aatcaccatc gcaggctatg
    27241 acggtggcac cggcgcaagc ccgctgtcgt cagtgaaata cgcaggttgc ccgtgggagc
    27301 tggggcttgt tgaaacccag caggcgctgg ttgccaatgg tctgcgtcat aagatccgtt
    27361 tgcaggtcga tggcggcctg aaaaccggtg ttgatatcat caaagcggcg attctcggcg
    27421 cagaaagctt cggcttcggc actggcccaa tggtcgcgct cggctgtaaa tatctgcgta
    27481 tttgccacct gaacaactgc gcaacgggtg tggcaactca ggatgacaaa ctgcgtaaga
    27541 atcactatca cggcctgccg ttcaaggtga cgaattactt tgagtttatc gcccgtgaaa
    27601 cccgcgagct gatggcacag ctgggggtaa cgcggctggt ggatctgatt ggtcgcaccg
    27661 acctgctgaa agagctggac ggtttcaccg ccaaacagca gaaactggcg ctgtcgaagc
    27721 tgctggagac cgccgaaccg catccaggta aggcactcta ctgcaccgaa aacaacccgc
    27781 cgtttgataa cggcctgctg aacgcgcagt tgctgcaaca ggcgaaaccg tttgtcgatg
    27841 aacgccagag caaaaccttc tggttcgata tccgcaatac cgatcgctcc gtgggcgcgt
    27901 cgctttcagg ctatatcgcc cagacgcacg gcgatcaggg gctggcagcc gatcctatca
    27961 aagcgtactt caacggcacc gcaggccaga gtttcggtgt atggaacgcg ggcggcgtgg
    28021 aactgtacct gaccggggat gccaacgact atgtcggtaa aggcatggcg ggcggcttaa
    28081 tcgccattcg tcctccggtt ggttccgcct tccgcagcca tgaagcaagt attatcggca
    28141 acacctgcct gtatggcgcg accggtggtc gtctgtatgc cgcaggccgc gcgggtgaac
    28201 gtttcggcgt gcggaactcc ggtgctatca ccgtggtaga aggcattggc gacaacggct
    28261 gtgaatatat gacgggcggt attgtctgta ttctgggtaa aaccggcgtt aacttcggtg
    28321 cgggcatgac cggcggcttc gcttacgttc tcgatgaaag cggtgatttc cgcaaacgcg
    28381 ttaacccgga actggtcgag gtcttaaacg ttgacgatct ggcgatccat gaagagcatc
    28441 tgcgcggtct tatcaccgag catgttcagc atactggctc tcagcgcggt gaagagattc
    28501 tggcgaactg gtcaaccttc gccactaaat ttgcgctggt taaaccgaag tccagtgatg
    28561 taaaagcact gctgggtcac cgtagtcgta gcgcagcaga gttgcgcgtg caggcgcagt
    28621 aaggggtagc aacaatgagt cagaatgttt atcaatttat cgacctgcag cgcgttgatc
    28681 cgcctaagaa accgctgaag atccgcaaaa ttgagtttgt tgaaatttac gagcagtttt
    28741 ccgaaggcca ggccaaagcg caggctgacc gctgcctgtc gtgcggcaac ccatactgcg
    28801 agtggaaatg tccggtacac aactacatcc cgaactggct gaagctcgcc aacgaggggc
    28861 gtatttttga agcggcggaa ctgtcgcacc agaccaacac cctgccggaa gtttgcggac
    28921 gagtctgccc gcaagaccgt ctgtgcgaag gttcctgcac tctgaacgat gagtttggcg
    28981 cggtgaccat cggcaacatt gagcgttata tcaatgataa agcgttcgaa atgggctggc
    29041 gtccggatat gtccggcgtg aagcaaaccg gtaaaaaagt ggcgattatc ggcgcaggcc
    29101 cggcaggtct ggcgtgtgcg gatgtcctga cgcgtaacgg cgtaaaagcc gttgtcttcg
    29161 accgtcatcc agaaattggc gggctgctga ccttcggtat tccggccttc aagctggaaa
    29221 aagaggtaat gacgcgtcgc cgtgaaatct tcaccggcat gggtattgaa ttcaaactca
    29281 ataccgaagt gggccgcgac gtgcagctgg acgatctgct gagtgattac gatgccgtct
    29341 tccttggcgt cgggacttat cagtcaatgc gcggcggtct ggaaaacaaa gacgccgatg
    29401 gcgtgtacgc agcgctgccg ttccttatcg ccaacaccaa acagttaatg ggctttggtg
    29461 aaacccgcga cgaaccgttc gtcagcatgg aaggcaaacg cgtggtggtc cttggcggtg
    29521 gcgacactgc gatggactgc gtgcgtacgt ccgtgcgcca gggagcgaag cacgttacct
    29581 gtgcctatcg tcgtgatgaa gagaacatgc cgggttcccg ccgcgaagtg aaaaacgcgc
    29641 gggaagaagg cgtagagttc aaattcaacg tccagccact ggggattgaa gtgaacggta
    29701 acggcaaagt cagcggcgta aaaatggtac gtaccgaaat gggcgaaccg gatgccaaag
    29761 gccgtcgccg cgcggagatc gttgcaggtt ccgaacatat cgttccggca gatgcagtga
    29821 tcatggcgtt tggtttccgt ccacacaaca tggaatggct ggcaaaacac agcgtcgagc
    29881 tggattcaca aggccgcatc atcgccccgg aaggcagcga caacgccttc cagaccagca
    29941 acccgaaaat ctttgctggc ggcgatatcg tccgtggttc cgatctggtg gtaaccgcta
    30001 ttgccgaagg tcgtaaggcg gcagacggta ttatgaactg gctggaagtt taagctctgt
    30061 cccagcgccg cctcctcaga aaagagtcgg cgctgaaatt ctcctttctt tctggaaagc
    30121 gcctcgcata atctgaagaa aaccaatgta atacgctcat ctggattgtt accggtagat
    30181 gcccggcgta tagctgattc cattattcaa cgcagcgcca tataaaggga cagataatgg
    30241 aatcgctctc agagagaacc tcaacaggct accagcaaat ccacgacggt attattcacc
    30301 tggtcgatag cgcccggacg gaaacggtac gtagcgttaa cgcgctgatg accgcgacat
    30361 actgggaaat tggccgacga attgtcgaat ttgaacaagg tggcgaggca agggctgcgt
    30421 atggtgcgca gctaatcaag cgactatcaa aggatttaag tctaaggtat aagcgtgggt
    30481 tctctgcaaa aaacttacgc caaatgaggc ttttttacct cttttttcaa catgttgaaa
    30541 ttcgccagac agtgtctggc gaattaacac cattgggaat tccgcagaca ccatctgcag
    30601 aattcccatc ggcaaagatt tggcagacgc tgtctgccaa attgagaggc tgtttgatat
    30661 ttccacagct tttgtattgc atctcctatt ttcggtttgt atattcatgc aaataaacga
    30721 aggaaagttg ccatgattta cattgaacag cttgaattaa tccataaaag tggtgatgtg
    30781 ttgtatccag taaaaataac cagaaaatca tcaggaaaaa ctgccttcca tcttgttcca
    30841 ttcggcttaa ataagactca cgaccttcta gaggtggaag atgcttcaga agcaattcgg
    30901 ctggtgattg atgaacgtca ttccattcgc tgcagtacac ttacagcaac tattacgaat
    30961 aaaaagggca agcgaattaa gcggacaggt atatacagta tcaagggtgt taacataaaa
    31021 gaatacaacg tcaggtaatg gcacagagcg gtccgtcagt tcaggtttgg ctctgtgcca
    31081 aagatgggtc aggtcacacc tgatctaata aatttaagcc attaaatcag ccttaacctt
    31141 caccaccacc tttttaatct cacccggctc gccgacaacg catcctggtt tatgcggttc
    31201 acttggcata aacacggcga acattcccgg ttttaagatg atggcttgct cgttatcaat
    31261 ggtgctgcaa agctgataat catcctcatg gtggaactct tcacactggc gcgcagtgcc
    31321 tgccatgcca aacagaatcc gttcctcacc gtttaataac agctggatat caatgtattg
    31381 ctcgtgcaat tccgcttttt tctcgacggg cgattgagtg ttaaacgtca tgacattcat
    31441 aaagatattg tcgccctgta attcgtaacg accaggcgct ttttcttgcg gtctggcagc
    31501 taatgccagc gttaacgcgt cctgtaacgc aggatgtaac ccagcagacg gtaatgactg
    31561 tacttcaccc atcatcataa tttttctccc tgggccaaca gcgcagcccc aagtaaacct
    31621 gcatcgtggc ggtagtgcgc cgccagtaaa tcaacatgaa atgccgctgg ctcctgcgcc
    31681 agatacgttt ccaccaacgc cagataccct tctgccagac caacgctgcc accgaccacc
    31741 acgcactggc aatcagttgt ggctttaata tcagcgatca gccttgccag cacatgtgcg
    31801 gagcggtgaa tcagttgctg cgcctgctcg tcgccctgcc cggcgcgtgt gaaaatagtt
    31861 ctcgcatccg cgcccatgag ttcaccttgc gctgccgctg caataccgcg accagaagca
    31921 atcgcttcca cgcaacctgt gcgtccacag ccgcagactg ggccgtgtgg atcggcaagc
    31981 gtatgcccga tgtgccccgc cagaccgcta gggccggtaa gcagtttacc gccgctcact
    32041 acaccgccgc cgacgccagt ggaaacggtg ataaacacca tatcggttat atcgccttcc
    32101 agcgcctgat actctgccca tgctgcggcc tgcgcgtcgt taatggcaat ggtcggcaaa
    32161 ttggaaagtt gttccagcgt tttgactaac ggaaagtgta gcaatccacc aagattatgc
    32221 ggattcagcg ccagcaagct gccgtcgcga ataattccgg ttgaagcgat ggcaacctgc
    32281 tgcgcatgag cttgcaacgg ggcgactaac gcggctaagg catcacgcaa cgcctgcgga
    32341 gtctggctgg ctggtgtcgg aagttctcgg cgatcgcgga tctgcccgtc agcgccaatc
    32401 agcgcggcgg caagtttagt accgccgata tcaatcgcca acgtggtcat agcaccgcct
    32461 ttttcatcgc tgtgttgtac cactgacaaa tgtgttcaag acgcgtaatg gcagaaccga
    32521 ccgtcaccgc ccacgcgccg tggcgcatcg catctgccgc ctgagcaggc gtgttgtaac
    32581 gcccttcggc aatcacccga catccggcgt cgctcaacgt tttcaccagc gccagatccg
    32641 gctcttctgg cgtttcaggc gtggtatagc cagaaagcgt agtgccaata atttcggctc
    32701 ccagcttttg gcatgccagg ccgtcttccg gcgttgagca gtcggtcatc gccagtaaac
    32761 cgtgatggtg aatacgtgcc agcagcgttt caacaggcac cggacgcggg cggtcggtgc
    32821 cgtcaatggc gataatgtcc gcgcccgcct gcgccagcgc atcaacatct tcaatatagg
    32881 ccgtgatgcg taccggagaa tcctccagat cgcgtttcac aattccaata atcggcacgc
    32941 tcaccaccgc acgcgtggct tgcagatttg ccacaccttc aatgcgaatg gcaaccgcgc
    33001 ccgcctgttc tgccgctaat gccatggcag cgacgatttc gggtttatcg agcgggctgt
    33061 ccggaaccgg ctggcaggag acaatcaggc caccgttagc agcgattttt tgatccagtt
    33121 gtgcaagtaa cgacatacat cttcccttag cgaaaggccc ggtacagaga ccgggcaaca
    33181 ggattaactt ttggttttga ctaaatcgtt tttggtgctg ccaaatggca cggcaccgct
    33241 aaatggtttg ccgtcgatag cgtcatgagt acgcaatgct tccgggcgca gccaacgctg
    33301 aacgcgggaa ggcatatcca gaccaatcag caggatcacc acaaatgtca gactgaacga
    33361 tagcgatgcc agcgcagtac ccagatccag acgttgagcg atcaacgcgc cgatgattgg
    33421 ggccagtgcg ccgcccaatg cgccaacgtt gtaggtaaag cccaggcccg ctgcacgctg
    33481 gtcggtatcg aaataaccgc caatcagttt cggtaagatc ccggcgatcc cttgtccaag
    33541 catttgctgg aagaacagta acagaccgag cacccagacg tttgcgccgc caatcgcaaa
    33601 taccggaata atcaacagct gcgaggccaa caggctacaa acgtaggctt tgcgggttcc
    33661 cagccagtca ccgaggaagc cgctgacaca gcaccccacc gcagccccaa agccgctaaa
    33721 gaacagcaca ttggcgacag tatgcgggtt ataagccaga tcggttttca gatacgttgg
    33781 cagcagcgcc tgaatcggcc atgagtagag gaaagcaaac aacacgacca ccatcagcat
    33841 tacgcccgtt ggccagcgtt tacccgtact ttgcaccata aagctgataa agattgcggc
    33901 gcataacagc ccaagaacag cgacgatcgc ggcattttgc aggttaccgg cgaagcaaaa
    33961 ccacagcgca gtagccgccg ccagtgtcat tacgatattg gcaatgcgat gttcaccacg
    34021 gtagagaata tctaccatcg tgcgtactgg tgctttacct gcatgcttct ctttccagtc
    34081 ttccgcttcc gggatgtttt tacgcagcca gagagcaaag atgataggca aaatgccgat
    34141 aaagaacagc gcacgccagc cccagaccgg aaccaccagg ctatagacct gagcggcaac
    34201 gacggccccc acagagaagc ctgaaatcag aaaaccactg gctttgttac gcagatgttt
    34261 tggccagctt tcaatgacat aggtggcgct ggaaccgtat tcacccgcca tccccatgcc
    34321 gatgaccaga cgcgcgataa acatggtgat gtagcctggc gcaaagccgc aggccagcgt
    34381 cccggccgag aagagaacga tgctggtgac cattgccaga cgacgcccgt agcggtcacc
    34441 catagcgccg agcatcaggc cgccgaacca gcgagagata aaggctgcgg agatcagact
    34501 tgccgcctgc accgtcgtca gcccgaattc accctgtact tcggtgagta ccagggcgat
    34561 taaaacgaaa tcaaaaccgt caagcagata tcccaaccag gcagcggaaa atgcgcgcca
    34621 ttgtgcacgg ttgagatggc gataccacgg gatattctgg gttgtagtac tcattgtgag
    34681 tctcccgcgg tgggcgatgc ccacacgctt tggtataaaa attgtagggt acagatgcgt
    34741 ttatttcccc tcacccggta ggggcgagcg aggggaaaca actcacccgc gctcttgcat
    34801 caactgctgg gccagcgcct tcagttctgg cagatatttt tcatctaccg gtccaaacgg
    34861 tttgcggcac agcggcacag aaacgacatc catataatgg aggacagttt tcaggccgcg
    34921 gaatacgccc gttttgatca gtaaatcaat gactttattg cattcagttt gcagtttctg
    34981 cgcggtctgg atatcgcctt ctttcagcgc cttaacgatc ccctgatagc gccagcccat
    35041 gatgttgtag gtactaccga taccaccatc agcgcccgcc agcagaccag aggcgaagat
    35101 ttcgtcgtaa ccgttataga gcacaagatc aggatgttca cgacggatct gctccatctg
    35161 atagagatcg ccagaggtct gtttcagcgc acctacgcca ggcaatgtaa caagtgtgtt
    35221 gatctgatcc agggtcagtt ttaccccact cagggctgga atgttgtaca ccaccatcgg
    35281 caaaccatcc gccgaatcaa taattgcccg atagtgatcg cagtgttctt caaagctgaa
    35341 aggatagtag aacggcgtga cggcggagac ggcatcgaag ccataacgtt tagccgatgc
    35401 cgcaagttgt tggctttcgg cggtgctgac gcaaccgacg tgggcgatga gtttaatctt
    35461 acctttcgcc tcttcggcga cgatttccag tacctgttca cgctcggaaa ggctttgtac
    35521 aaaggcctcg ccggtcgaac cacccacgta taaaccgtcg atgccctgct gaatattgaa
    35581 ctgaaccagg cgacgcagac tcgctttatc cagtgcttgt tgttggtcaa aaggagtcag
    35641 gagtgcagcc attacgccac gtaaattcgt tgccataaat acctctgaag tgatgcttgt
    35701 ctgataaacg atataccttt atacctgtta taccagatca attaagcaac accccataca
    35761 gaaagcttat aatgcgatct gcttcactaa agtggcatta tttctttttg ttggtggtct
    35821 gaccgaaagc gtgccaggta gcagagacgc tgttgagatg cgattgcaac gcacgatcgg
    35881 cttcgtcagg atcatgacgg cggatcgcat caacgatcgc aatatgctgt tgataactaa
    35941 cgttgttatg ttcgtgcagt gcctgatcgg taaccgttgg gcgtgcggca ataagccagt
    36001 cgagcagggc aacgtggatc gccatgaaga ttgggttacc ggggatctcc gccagcacgc
    36061 ggtggaaatc aacgtctgaa cgaatgaatg ccgcgttgtt atccagcgac tgactgttga
    36121 tttccagtgc ttttgccagc aaatcgattt gctcatcggt ggcatgttca gccgcatagc
    36181 gcaccagact ggattcaaag aacagacgta attgttcgaa atgggcaatc ccaccgggat
    36241 gagaaaggaa atctttcgcc atgccggaaa gctcaccgat gatagtgtcc gcagaaggac
    36301 gcgagacgcg agcgcgttcg ccgttgttta tttgcaccag acctttgcgt tttaacgctg
    36361 ccagcgcttc acgcaccgaa ggacgcccga cgttaaagaa cgccatcagt tcgcgttcag
    36421 acggtaattg ttcaccttcg ccaaattcac gacggcggat catctgttcc agctcttctt
    36481 ccaccatttc ggagagtttt ttacgcgcca gcgggcggct acgcaagttg cgaccaattg
    36541 caggtgaaga atcttcggtt tgcgaatcaa atgcgttcat aaggcccatt ctgtaaggtc
    36601 agtgtgatta acatcatcag tgacatccta tcacaggatt gaaagtaggg gaaaatggca
    36661 ggtttttctc tttgtgcctc atcattacca taattaacgg aataattaac tattgcgaaa
    36721 aattaatgta acgcagataa aaacatcccg tttgaattat ttataagact attcacgagc
    36781 attatgaata ttatgaatgc gttcttgcaa aataatcata agcgcatatt ttttaatgaa
    36841 aaattatctc acctacaatt aaaaacacga catccgcacc ataaatagac ttgcaaaaaa
    36901 tataacatca ttgttttcaa tctgccgttt atgggattga ccgttttctt ttgacacgga
    36961 gttcaacaat gttcggcata attatatctg tcatcgtatt aattacgatg ggctatttga
    37021 tcctgaaaaa ctacaaacct caggtggtgc tggctgccgc aggtatcttc ctgatgatgt
    37081 gcggtgtctg gttagggttc ggtggtgtac tcgagcccgc caaaagcagc ggctacttga
    37141 tcgtcgatat ttataatgaa atcctgcgca tgctgtccaa ccgcattgcc ggattggggc
    37201 tatcgattat ggcggtgggc ggtatgcccg ctacatggag cgcatagggg ccagtcgcgc
    37261 gatggtgagc ttgttaagcc gcccgttaaa actcattcgc tcaccgtata ttattctgtc
    37321 ggcaacttac gtcatcggtc aaatcatggc gcagtttatt accagcgcct ccggtctggg
    37381 tatgttgctg atggtcacct tatttccgac actggtgagt ctgggagtaa gtcgtctctc
    37441 tgcggtggcg gttatcgcaa ccacaatgtc cattgagtgg ggaattctgg aaacgaactc
    37501 catttttgca gcccaggtcg cgggaatgaa aattgccact tacttcttcc actaccagct
    37561 tccggtcgcc tcttgcgtca ttatctcggt ggcgatctcc cactttttcg tgcaacgcgc
    37621 ttttgacaaa aaagataaaa atatcaatca cgaacaagca gagcaaaaag ctctcgataa
    37681 tgtcccgccg ctctattacg ccattttacc tgtgatgccg ttaatcctga tgctcggctc
    37741 gctgttcctc gcccacgtcg ggctgatgca gtcagaactg catctggtgg tggtgatgtt
    37801 actgagtttg acggtgacga tgtttgttga gttcttccgc aagcataact tgcgcgaaac
    37861 aatggacgat gtgcaggcgt tttttgacgg catgggtacg cagtttgcca acgtggtaac
    37921 gctggtggtc gcgggtgaaa tatttgcgaa aggcttaacg acgattggca ctgtcgatgc
    37981 ggttatcagg ggtgcggagc attctggtct gggcggtatt ggcgtgatga ttattatggc
    38041 gctggtcatt gccatttgtg ccattgtgat gggctctggc aatgcgccgt ttatgtcatt
    38101 tgccagtctt attccgaata tcgcagctgg actacatgta ccagcggttg taatgattat
    38161 gccgatgcat tttgccacga cgctagcgcg cgcggtttcg ccgattactg cggtggtggt
    38221 cgttacgtca ggaattgcag gcgtttcgcc ttttgcggtg gtgaagcgaa cagcgatccc
    38281 catggcagtc ggtttcgtgg tgaatatgat tgccacaatc aagctatttt attaagccat
    38341 taaaagacaa aacaggccac cagggcctgt ttttgtatta cttcacaacg cgtaatgccg
    38401 gtcgaccacc gcgtggtggc tgcggaggtt catcgtcagg atgagtgtca tcatcgtgat
    38461 ctggcttgtc gccatcaata accgacataa cggtttcgtt gtctgccgat gcctcttcat
    38521 cattcatgat gctggtatct tcatcgtagg cagcttcagg ctcaaacatt gtgcctgcgc
    38581 cattttcacg ggcgtagata gccagcacgg cagccagcgg cacagaaacc tgacgcggaa
    38641 tgccgccaaa gcgcgcgtta aagcgcacct catcattcgc cagttccaga ttgccgacag
    38701 cacgcggcgc aatgttgagt acgatttgcc cgtcacgcgc atattccata ggaacctgca
    38761 cgccagggag cgtcacatcc accaccaggt gcggcgtgag ctggttatcc agcaaccact
    38821 catagaatgc acgcagcaga tagggacgac gtggtgttag ctgtgacaaa tccatacaga
    38881 ttaactccgg cccagacgca tttcacgttc tgcttcagtt aaagaagcaa ggaaagagtc
    38941 acgctcaaag acgcgggtca tatagccttt cagctctttc gcacccgggc cgctgaactc
    39001 gatgcccagt tgcggcagac gccacagcag cggagcaaga tagcaatcga ccaggctgaa
    39061 ctcatcgctc aggaagtacg gcttctgacc gaagaccggc gcaatcgcca gcagttcttc
    39121 gcgcagttgc ttacgtgcgg catctgcttc agaagctgaa ccgttgatga tggtgttcat
    39181 cagcgtgtac cagtcttttt cgatgcgatg catgtacaga cggctttcac cgcgagctac
    39241 cgggtaaaca ggcatcagtg gcggatgcgg gaaacgctca tccagatatt ccataatgat
    39301 gcgagattcc cacagggtca gctcacgatc caccagggtc ggaacgctct gattcgggtt
    39361 gaggtcaatc agatcctgag gcggattgtc cttttccacg tgttcgatct cgaaacttac
    39421 acctttctca gccagcacaa tgcggacctg atggctatag atgtcagtag gaccggaaaa
    39481 cagcgtcatt accgaacgtt tgttggcagc gacagccatg aaaacctcca ggtatagtca
    39541 gaatttttac tgctaccagc caccaggtgg ccagtcagaa gttgtgttac ccagtaagga
    39601 acgactctct ttgttcgaaa atcaaacaaa aaatgagcaa tacccgacat ttgggcagaa
    39661 aattggatga tagtttacca gattttgcga cctttgtggt gagtcgatgc cggaaatggg
    39721 gaaaaagaga tgcgctttag tctgaaatag ttgacttagt cccttattgg cgatgtggtt
    39781 tttgttttac ctgtctgtca ggtggcagca aaaagcaact ttccagtttt tacgctgatt
    39841 cagattttag ctataaaaaa acccgccgaa gcgggttttt tcgaaaattg ttttctgccg
    39901 gagcagaagc caattaacgt ttggagaact gcggacgacg acgtgcttta cgcagaccga
    39961 ctttcttacg ttcaacctga cgagcgtcac gagtaacgaa gccagcttta cgcagttcag
    40021 aacgcaggga ctcgtcgtat tccatcagag cgcgggtgat accgtgacgg atcgcaccag
    40081 cctgaccaga gataccacca cctttaacgg tgatgtacag gtccagtttc tcaaccatgt
    40141 cgaccagttc cagcggctga cgaactacca tgcgggcagt ttcacgaccg aagtactgtt
    40201 ccagagaacg ttggttgatt acgattttac cgttgcccgg tttgatgaaa acgcgagctg
    40261 cggaactttt gcggcgacca gtgccgtagt attgattttc agccattgcc tataatcccg
    40321 attagatgtc aagaacttgc ggttgctgtg ccgcgtggtt gtgctcgtta cccgcgtaaa
    40381 ctttcagttt acggaacata gcacgaccca gcgggccttt tggcaacatg cctttaaccg
    40441 cgatttcaat cacacgctca ggacggcgag caatcatctc ttcaaaggtc gcttgtttga
    40501 taccaccgat gtggccggtg tggtgatagt acactttgtc agtacacttg ttgccggtta
    40561 cagcaacttt gtcagcgttc agaacgatga tgtaatcacc ggtatctacg tgcggagtgt
    40621 attccgcttt gtgcttaccg cgcaggcgac gagccagttc agtagccaga cggcccagag
    40681 ttttaccggt cgcgtcaaca acataccagt cgcgttttac ggtttctggt ttagctgtaa
    40741 aagttttcat taaaagctta cccaataaat agttacacgt tggtgaacac ccaaacgtct
    40801 tcaattgttg aggttcacac gacaaagtcc ggcaaaccta ccccttcgaa tagcctatgc
    40861 cagcacacaa aaagttttgg gaaaaaactt tcttgtaacg tggggtcgca ggattataga
    40921 gaagtcgggg tcaaagatcg accccttttt gtgatttgtg acaggtttta acccgccaaa
    40981 tgctcgcgct tcagatactc ttcgctttgc atctcttgca gacgtgacag gcaacgctgg
    41041 aactcaaact tcagccgatc gccctgataa atttcataca gcggcacttc tgcactcacc
    41101 actaatttga catggcgctc gtaaaactca tccaccagcg caataaagcg ccgcgcttcg
    41161 ctctccatca accgcgtcat aactggtaca tcaaacaaca tgaccgtatg aaagaggcgt
    41221 gagagcgcaa tatagtcatg ctggctgcgg gcatcgacac acaaggtggt aaaagagaca
    41281 gcaagcgtct gattctcagc gcccattgtc gccagcggtc gatggttgat ttctaacgtc
    41341 ggtgaatttt cgcgtttcgc tcccgccagc gccaaccata gtttatccat ttgtgcccgg
    41401 gtttcatcgt ggagtggcga aagccacaga tgcgcctgag tgagtgtacg cagtcgataa
    41461 tcaacaccag cgtccacgtt cattacatca caatgctgtt taatggcatc gattgcaggc
    41521 agaaaacgcg cacgttgcaa gccatttcga taaagttcgt ccggcggaat atttgacgtt
    41581 gctaccaggg taataccgcg ggcgaacagg gctttcatca gaccgccaag tagcatggcg
    41641 tcggtaatat cagaaacaaa aaattcgtca aaacagagca cgtcagtttc ggctttaaag
    41701 cgatcggcaa taatttccag cggatcggtc tgcccctgta aggcagttag ctcttcgtgc
    41761 acccgcagca taaaacggtg aaagtgcagg cgctgtttcc gctctcccgg caggctttga
    41821 tagaaaaggt ccatcagcca ggttttcccg cgtcctacac cgccccacat atataagcca
    41881 cgcactggcg tatgctttgt gtcttcgcgt ttaccccaca gcttaccgac ccgcgccatt
    41941 agcccactcg tcctgggggc tggtggcctg ctattgatga gttcttgata aataatttcc
    42001 aggcggctga cggcctcttt ttgaacgtcg tcgggttgat ggctgccttc attgagcgcc
    42061 ttcaggtatt gcgatgttgg ggtaacgctt tgcatgatct tattattatt ccttgaataa
    42121 tcggtgcgcc gttgttcacg gttgacgaaa aaaaggccgt tctacactac gcgatatgca
    42181 gtcgggattc cacttctgtg gaattaacgg ttatagtggc ataatcagcc gtaggcatgg
    42241 agcctgaagc caacacccta cggaaacaaa agacaacggg agatgttcat gacctgggaa
    42301 tatgcgctaa ttgggttagt cgtcggcatc attattggtg ctgtggccat gcgttttggt
    42361 aatcgtaaac tacgccagca acaggcgttg cagtacgaac tggaaaagaa taaagctgaa
    42421 ctggacgagt atcgcgaaga gctggttagc cactttgccc gcagcgcgga attactggat
    42481 accatggcgc acgactatcg ccagctgtat cagcacatgg cgaaaagctc cagcagcctg
    42541 ctgccggaac tgtctgctga agcaaacccg ttccgtaatc gtctggcaga gtctgaagcc
    42601 agcaacgatc aggcaccggt gcagatgcct cgcgactatt ctgaaggtgc atccggcctg
    42661 ctgcgtactg gcgcgaagcg cgactaattt atttttcggg cgcagccatt gcgccctcct
    42721 cttctctccc tccccgacta tcatttaatc tggtgtctca ttgttagccg tctgaaaatt
    42781 caataacatc aaactgtttt gaatctcttt tcttatcatt caggtacgag agcaggaata
    42841 atgaaaaaac aaacccagct gttgagtgca ttagcgttaa gtgtcgggtt aactctctcg
    42901 gcgtcatttc aggccgtcgc gtcgattcca ggccaggttg ccgatcaggc ccctctcccc
    42961 agtctggctc caatgctgga aaaagtgctt ccggcagtgg tgagcgtacg ggtggaagga
    43021 acggccagtc agggacagaa aatcccggaa gaattcaaaa agttttttgg tgatgattta
    43081 ccggatcaac ctgcacaacc cttcgaaggt ttaggttccg gtgtcatcat caacgccagt
    43141 aaaggctatg tgctgaccaa caaccatgtg attaatcagg cacagaaaat cagtattcag
    43201 ctcaatgatg ggcgcgagtt tgatgcaaaa ctgattggta gcgatgacca gagcgatatc
    43261 gccctgttac aaattcaaaa cccgagcaaa ttaacgcaaa tcgctattgc cgactccgat
    43321 aaattgcgcg tcggtgattt tgccgtagcg gtcggtaacc catttggcct tgggcaaacc
    43381 gccacctctg gcattgtttc cgcattaggc cgcagcgggt tgaatcttga aggtctggaa
    43441 aactttatcc agacagatgc ttccattaac cgcggtaact ccggcggtgc actattaaac
    43501 cttaacggtg agttaattgg catcaacact gcaatccttg cgcctggcgg cgggagcgtc
    43561 gggattggat ttgccatccc cagtaatatg gcgcgaacac tggcgcagca gcttatcgac
    43621 tttggtgaaa tcaaacgcgg tttgttaggc atcaaaggca ccgagatgag tgccgatatc
    43681 gccaaagcct tcaaccttga cgtgcagcgt ggcgcgtttg tcagcgaagt gttgccaggt
    43741 tctggctcgg caaaagcggg cgtcaaagcg ggcgatatta ttaccagcct caacggcaaa
    43801 ccgctgaata gctttgctga gttgcgctct cgtatcgcga ctacagagcc gggcacgaaa
    43861 gtgaagcttg gcctgctgcg taacggcaaa ccactggaag tagaagtgac gcttgatacc
    43921 agcacctctt cgtcggccag cgctgaaatg atcacgccag cgctggaagg tgcaacgttg
    43981 agcgatggtc agctaaaaga ttgcggcaaa ggtattaaga tcgatgaagt tgtcaaagga
    44041 agcccagctg ctcaggcagg cttgcaaaaa gacgatgtga tcattggcgt caaccgcgat
    44101 cgggtgaact cgattgctga aatgcgtaaa gtgctggcgg caaaaccggc catcatcgcc
    44161 ctgcaaattg tacgcggcaa tgaaagcatc tatctgctga tgcgttaatg tcgtaaaccg
    44221 ggcatcaggc ttacgtgtga tgtccggtta actcgtggta tgctgctgcc gttccctttt
    44281 ttaatgacgc ctccatcatg tttgtgaagc tcttacgttc cgttgcgatt ggattaattg
    44341 tcggcgctat tctgctggtt gccatgcctt cgctgcgcag ccttaacccg ctttccactc
    44401 cgcaatttga cagtaccgat gagacgcctg ccagctataa tctggcggtt cgccgcgccg
    44461 cgccagcggt ggttaacgtt tacaaccgtg gtgtgaacac caactctcac aaccagcttg
    44521 agatccgcac cctgggatcc ggtgtaatca tggatcaacg cggttatatc atcaccaata
    44581 aacacgtcat caacgacgcc gatcagatca tcgtcgcctt acaggatgga cgtgtatttg
    44641 aagcattgct ggtgggatct gactctctaa ccgatctggc ggtacttaaa attaatgcca
    44701 ctggcggttt acctaccatt ccaattaatg cacgtcgcgt accgcacatt ggcgacgtag
    44761 tactggcgat cggtaacccg tacaacctcg ggcagaccat tacccaaggg attattagtg
    44821 ccacggggcg aatcggtctg aaccctaccg ggcggcaaaa cttcctacaa accgatgctt
    44881 ccattaacca cggtaactct ggcggcgcgc tggtgaactc gctgggagaa ctgatgggca
    44941 ttaacacgct gtcgtttgat aagagtaacg atggcgaaac gccggaaggt atcggctttg
    45001 cgattccttt ccagttagca accaaaatta tggataagct gatccgcgat gggcgcgtga
    45061 tccgcggcta cattggcatt ggtggacgtg agatcgcacc actgcacgcg cagagcggtg
    45121 gtatagatca actgcaaggg atcgtggtta atgaagtgtc acctgacggc ccggcggcga
    45181 atgcgggtat tcaggtcaac gatctgatta tttcggtgga taacaaaccg gccatctctg
    45241 ctctggagac gatggatcag gtggcagaaa ttcgccctgg ttcggtgatc ccggttgtag
    45301 tgatgcgtga tgataagcag ttaacgctgc aggtcaccat tcaggaatat ccggcaacca
    45361 attaagtcga gtgctcaaaa caaaaaaccg gagtctgtgc
//
LOCUS       DAJVSY010000008        43867 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.008, whole genome shotgun sequence.
ACCESSION   DAJVSY010000008 DAJVSY010000000
VERSION     DAJVSY010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 43867)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 43867)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..43867
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.008"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            83..625
                     /gene="lpfE"
                     /locus_tag="OQQ19_000463"
     CDS             83..625
                     /gene="lpfE"
                     /locus_tag="OQQ19_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000831423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long polar fimbrial protein LpfE"
                     /protein_id="HCS1802212.1"
                     /translation="MKRTILALCLLPLSFSSFAATTDLGPKGTLKFTLKISQGACELV
                     KDSVEVDMGTAVLKKPVRIGTEINPTPFSIGLKNCSEVVRAYVTMDGTPNADDSNLFA
                     LDAGGATGVGLKIKTAAGVQQFPENTTPIPVEFAINGDGAHQLNYIASYVPIRADATI
                     GRADATVDFTVQYSTNNFTS"
     gene            865..2556
                     /gene="eptB"
                     /locus_tag="OQQ19_000464"
     CDS             865..2556
                     /gene="eptB"
                     /locus_tag="OQQ19_000464"
                     /EC_number="2.7.8.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418002.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid A phosphoethanolamine
                     7''-transferase"
                     /protein_id="HCS1802213.1"
                     /translation="MRYIKSITQQKLSFLLAIYIGLFMNGAVFYRRFGSYAHDFTVWK
                     GVSAVVELAATVLVTFFLLRLLSLFGRRSWRILASLVVLFSAGASYYMTFLNVVIGYG
                     IIASVMTTDIDLSKEVVGLNFILWLIAVSALPLILIWNNRCRYTLLRQLRTPGQRIRS
                     LAVVVLAGIMVWAPIRLLDIQQKKVERATGVDLPSYGGVVANSYLPSNWLSALGLYAW
                     ARVDESSDNNSLLNPAKKFTYQAPQNVDDTYVVFIIGETTRWDHMGIFGYERNTTPKL
                     AQEKNLAAFRGYSCDTATKLSLRCMFVRQGGAEDNPQRTLKEQNIFAVLKQLGFSSDL
                     YAMQSEMWFYSNTMADNIAYREQIGAEPRNRGKPVDDMLLVDEMQQSLGRNPDGKHLI
                     ILHTKGSHFNYTQRYPRSFAQWKPECIGVDSGCTKAQMINSYDNSVTYVDHFISSVID
                     QVRDKKAIVFYAADHGESINEREHLHGTPRELAPPEQFRVPMMVWMSDKYLENPANAQ
                     AFAQLKKEADMKVPRRHVELYDTIMGCLGYTSPDGGINENNNWCHIPQAKEAAAN"
     gene            2648..2724
                     /locus_tag="OQQ19_000465"
     tRNA            2648..2724
                     /locus_tag="OQQ19_000465"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2682..2684,aa:Pro,seq:cgg)
     gene            3468..5075
                     /gene="dppA"
                     /locus_tag="OQQ19_000466"
                     /pseudo
     CDS             3468..5075
                     /gene="dppA"
                     /locus_tag="OQQ19_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418001.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter substrate-binding
                     protein DppA"
     gene            5383..6402
                     /gene="dppB"
                     /locus_tag="OQQ19_000467"
     CDS             5383..6402
                     /gene="dppB"
                     /locus_tag="OQQ19_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter permease DppB"
                     /protein_id="HCS1802214.1"
                     /translation="MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGI
                     SPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLEL
                     GVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW
                     NLTPASGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLA
                     VIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLA
                     GAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPR
                     IRHKK"
     gene            6412..7314
                     /gene="dppC"
                     /locus_tag="OQQ19_000468"
     CDS             6412..7314
                     /gene="dppC"
                     /locus_tag="OQQ19_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010426221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter permease DppC"
                     /protein_id="HCS1802215.1"
                     /translation="MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIVLF
                     IAIFANWIAPYNPAEQFRDALLAPPAWQEGGSMAHLLGTDDVGRDMLSRLMYGARLSL
                     LVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS
                     IGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAP
                     LIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAI
                     LLTVLAFNLMGDGLRDALDPKLKQ"
     gene            7325..8308
                     /gene="dppD"
                     /locus_tag="OQQ19_000469"
     CDS             7325..8308
                     /gene="dppD"
                     /locus_tag="OQQ19_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HCS1802216.1"
                     /translation="MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGS
                     GKSVSSLAIMGLIDYPGRVMAEKLVFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSL
                     NPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
                     RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVA
                     EAAHKIIVMYAGQVVETGDAHAIFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPG
                     KYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLDDAGRPTL"
     gene            8305..9309
                     /gene="dppF"
                     /locus_tag="OQQ19_000470"
     CDS             8305..9309
                     /gene="dppF"
                     /locus_tag="OQQ19_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP binding subunit
                     DppF"
                     /protein_id="HCS1802217.1"
                     /translation="MSTQEATLQQPLLQAIDLKKHYPVKKGMFAPERLVKALDGVSFN
                     LERGKTLAVVGESGCGKSTLGRLLTMIETPTGGELYYQGQDLLKHDPQAQKLRRQKIQ
                     IVFQNPYGSLNPRKKVGQILEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDRYPH
                     MFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFI
                     SHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRER
                     IKLSGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQLKDYGGQLVACFAVDQDENPQR
                     "
     gene            complement(9339..10610)
                     /locus_tag="OQQ19_000471"
     CDS             complement(9339..10610)
                     /locus_tag="OQQ19_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCS1802218.1"
                     /translation="MQHNTLSKHNQKLPFTRYDFGWVLLCIGMAIGAGTVLMPVQIGL
                     KGIWVFITAAIIAYPATWVVQDIYLKTLSESDSCNDYTDIISHYLGKNWGIFLGVIYF
                     LMIIHGIFIYSLSVVFDSASYLKTFGLTDADLSQSLLYKVAIFAVLVAIASGGERLLF
                     KISGPMVVVKVGIIVVFGFAMIPHWNFANITAFPQASVFFRDVLLTIPFCFFSAVFIQ
                     VLNPMNIAYRKREADKVLATRLALRTHRISYITLIAVILFFAFSFTFSISHEEAVSAF
                     EQNISALALAAQVIPGHIIHITSTVLNIFAVLTAFFGIYLGFHEAIKGIILNLLSRII
                     DTKKINSRMLTLAICAFIVITLTIWVSFRVSVLVFFQLGSPLYGIVSCLIPFFLIYKV
                     AQLEKLRGFKAWLILLYGILLCLSPLLKLIE"
     gene            11086..11193
                     /locus_tag="OQQ19_000472"
     CDS             11086..11193
                     /locus_tag="OQQ19_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin Ldr family
                     protein"
                     /protein_id="HCS1802219.1"
                     /translation="MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK"
     gene            complement(11280..12959)
                     /gene="bcsG"
                     /locus_tag="OQQ19_000473"
     CDS             complement(11280..12959)
                     /gene="bcsG"
                     /locus_tag="OQQ19_000473"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsG"
                     /protein_id="HCS1802220.1"
                     /translation="MTQFTQNTAMPSSLWQYWRGLSGWNFYFLVKFGLLWAGYLNFHP
                     LLNLVFAAFLLMPIPRYSLHRLRHWIALPIGFALFWHDTWLPGPESIMSQGSQVAGFS
                     TDYLIDLVTRFINWQMIGAIFVLLVAWLFLSQWIRITVFVVAILLWLNVLTLAGPSFS
                     LWPAGQPTTTVTTTGGNAAATVETTGGAPVVGDMPAQTTPPTTANLNAWLNNFYNAEA
                     KRKSTFPSSLPADAQPFELLVINICSLSWSDIEAAGLMSHPLWSHFDIEFKNFNSATS
                     YSGPAAIRLLRASCGQTSHTNLYQPANNDCYLFDNLSKLGFTQHLMMGHNGQFGGFLK
                     EVRENGGMQTELMDQTNLPVILLGFDGSPVYDDTTVLNRWLDVIEKDKNSRSATFYNT
                     LPLHDGNHYPGVSKTADYKARAQKFFDELDAFFTELEKSGRKVMVVVVPEHGGALKGD
                     RMQVSGLRDIPSPSITDVPVGVKFFGMKAPHQGAPIVIDQPSSFLAISDLVVRVLDGK
                     IFTEDNVDWKKLTSGLPQTAPVSENSNAVVIQYQDKPYVRLNGGDWVPYPQ"
     gene            complement(12956..13147)
                     /gene="bcsF"
                     /locus_tag="OQQ19_000474"
     CDS             complement(12956..13147)
                     /gene="bcsF"
                     /locus_tag="OQQ19_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417994.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsF"
                     /protein_id="HCS1802221.1"
                     /translation="MMTISDIIEIIVVCALIFFPLGYLARHSLRRIRDTLRLFFAKPR
                     YVKPAGTLRRTEKARATKK"
     gene            complement(13144..14715)
                     /gene="bcsE"
                     /locus_tag="OQQ19_000475"
     CDS             complement(13144..14715)
                     /gene="bcsE"
                     /locus_tag="OQQ19_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsE"
                     /protein_id="HCS1802222.1"
                     /translation="MRDIVGPVFSIGISSLWDELRHMPAGGVWWFNVDRHEDAISLAN
                     QTIASQAETAHVAVISMDSDPAKIFQLDDYQGPEKIKLFSMLNHEKGLYYLTRDLQCS
                     IDPHNYLFILVCANNAWQNIPAERLRSWLDKMNKWSRLTHCSLLVINPGNNNDKQFSL
                     LLEEYRSLFGLASLRFQGDQHLLDIAFWCNEKGVSARQQLSVQQQNGIWTLVQSEEAE
                     IQPRSDEKRILSNVAVLEGAPPLSEHWQLFNNNEVLFNEARTAQAATVVFSLQQNAQI
                     EPLARSIHTLRRQRGSAMKILVRENTASLRATDERLLLACGANMVIPWNAPLSRCLTM
                     IESVQGQKFSRYVPEDITTLLSMTQPLKLRGFQKWDVFCNAVNNMMNNPLLPAHGKGV
                     LVALRPVPGIRVEQALTLCRPNRTGDIMTIGGNRLVLFLSFCRINDLDTALNHIFPLP
                     TGDIFSNRMVWFEDDQISAELVQMRLLAPEQWGMPLPLTQSSKPVINAEHDGRHWRRI
                     PEPMRLLDDAVERSS"
     gene            14988..15176
                     /locus_tag="OQQ19_000476"
     CDS             14988..15176
                     /locus_tag="OQQ19_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhjR family protein"
                     /protein_id="HCS1802223.1"
                     /translation="MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQ
                     LAAALKRWPLLAEFAQQK"
     gene            15188..15940
                     /gene="bcsQ"
                     /locus_tag="OQQ19_000477"
     CDS             15188..15940
                     /gene="bcsQ"
                     /locus_tag="OQQ19_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsQ"
                     /protein_id="HCS1802224.1"
                     /translation="MAVLGLQGVRGGVGTTTITAALAWSLQMLGENVLVVDACPDNLL
                     RLSFNVDFTHRQGWARAMLDGQDWRDAGLRYTSQLDLLPFGQLSIEEQENPQHRQTRL
                     SDICSGLQQLKASGRYQWILIDLPRDASQITHQLLSLCDHSLAIVNVDANCHIRLHQQ
                     ALPDGAHILINDFRIGSQVQDDIYQLWLQSQRRLLPMLIHRDEAIAECLAAKQPVGEY
                     RSDALAAEEILTLANWCLLNYSGLKTPVGSAS"
     gene            15937..18549
                     /gene="bcsA"
                     /locus_tag="OQQ19_000478"
     CDS             15937..18549
                     /gene="bcsA"
                     /locus_tag="OQQ19_000478"
                     /EC_number="2.4.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417990.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-forming cellulose synthase catalytic
                     subunit"
                     /protein_id="HCS1802225.1"
                     /translation="MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILA
                     WIFIPLEHPRWQRIRAEHKNLYPHINASRPLDPVRYLIQTCWLLIGTSRKETPKPRRR
                     AFSGLQNIRGRYHQWMNELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSLIL
                     ALICVTQPFNPLAQFIFLMLLWGVALIVRRMPGRFSALMLIVLSLTVSCRYIWWRYTS
                     TLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVPLPKDMSLWPSVDIF
                     VPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQNVGVKYIARTTH
                     EHAKAGNINNALKYAKGEFVSIFDCDHVPTRSFLQMTMGWFLKEKQLAMMQTPHHFFS
                     PDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIAVE
                     TVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWARGMVQIFRLDNP
                     LTGKGLKFAQRLCYVNAMFHFLSGIPRLIFLTAPLAFLLLHAYIIYAPALMIALFVLP
                     HMIHASLTNSKIQGKYRHSFWSEIYETVLAWYIAPPTLVALINPHKGKFNVTAKGGLV
                     EEEYVDWVISRPYIFLVLLNLVGVAVGIWRYFYGPPTEMLTVVVSMVWVFYNLIVLGG
                     AVAVSVESKQVRRSHRVEMTMPAAIAREDGHLFSCTVQDFSDGGLGIKINGQAQILEG
                     QKVNLLLKRGQQEYVFPTQVARVMGNEVGLKLMPLTTQQHIDFVQCTFARADTWALWQ
                     DSYPEDKPLESLLDILKLGFRGYRHLAEFAPSSVKGIFRVLTSLVSWVVSFILRRPER
                     SETAQPSDQALAQQ"
     gene            18560..20899
                     /gene="bcsB"
                     /locus_tag="OQQ19_000479"
     CDS             18560..20899
                     /gene="bcsB"
                     /locus_tag="OQQ19_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis cyclic di-GMP-binding
                     regulatory protein BcsB"
                     /protein_id="HCS1802226.1"
                     /translation="MKRKLFWICAVAMGMSAFPSFMTQATPATQPLINAEPAVAAQTE
                     QNPQVGQVMPGVQGADAPVVAQNGPSRDVKLTFAQIAPPPGSMVLRGINPNGSIEFGM
                     RSDEVVTKAMLNLEYMPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPIN
                     PLFITDFNRVRLEFVGHYQDVCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPV
                     PFFDPRDNRTNTLPMVFAGAPDVGLQQASAIVASWFGSRSGWRGQNFPVLYNQLPDRN
                     AIVFATNDKRPDFLRDHPAVKAPVIEMINHPQNPYVKLLVVFGRDDKDLLQAAKGIAQ
                     GNILFRGESVVVNEVKPLLPRKPYDAPNWVRTDRPVTFGELKTYEEQLQSSGLEPAAI
                     NVSLNLPPDLYLMRSTGIDMDINYRYTMPPVKDSSRMDISLNNQFLQSFNLSSKQEAN
                     RLLLRIPVLQGLLDGKTDVSIPALKLGATNQLRFDFEYMNPMPGGSVDNCITFQPVQN
                     HVVIGDDSTIDFSKYYHFIPMPDLRAFANAGFPFSRMADLSQTITVMPKAPNEAQMET
                     LLNTVGFIGAQTGFPAINLTVTDDGSTIQGKDADIMIIGGIPDKLKDDKQIDLLVQAT
                     ESWVKTPMRQTPFPGIVPDESDRAAETRSTLTSSGAMAAVIGFQSPYNDQRSVIALLA
                     DSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLRVGDVYYVGHLPWFERVWYAL
                     ANHPILLAVLAAISVILLAWVLWRLLRIISRRRLNPDNE"
     gene            20906..22012
                     /gene="bcsZ"
                     /locus_tag="OQQ19_000480"
     CDS             20906..22012
                     /gene="bcsZ"
                     /locus_tag="OQQ19_000480"
                     /EC_number="3.2.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase"
                     /protein_id="HCS1802227.1"
                     /translation="MNVLRSGIVTMLLLAAFSVQAACTWPAWEQFKKDYISQEGRVID
                     PSDARKITTSEGQSYGMFFALAANDRAAFDNILDWTQNNLAQGSLKERLPAWLWGKKE
                     NSKWEVLDSNSASDGDVWMAWSLLEAGRLWKEQRYTDIGSALLKRIAREEVVTVPGLG
                     SMLLPGKVGFAEDNSWRFNPSYLPPTLAQYFTRFGAPWTTLRETNQRLLLETAPKGFS
                     PDWVRYEKDKGWQLKAEKTLISSYDAIRVYMWVGMMPDSDPQKARMLNRFKPMATFTE
                     KNGYPPEKVDVATGKAQGKGPVGFSAAMLPFLQNRDAQAVQRQRVADNFPGSDAYYNY
                     VLTLFGQGWDQHRFRFSTKGELLPDWGQECANSH"
     gene            21994..25467
                     /gene="bcsC"
                     /locus_tag="OQQ19_000481"
                     /pseudo
     CDS             21994..25467
                     /gene="bcsC"
                     /locus_tag="OQQ19_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026226.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsC"
     gene            25549..27537
                     /gene="hmsP"
                     /locus_tag="OQQ19_000482"
     CDS             25549..27537
                     /gene="hmsP"
                     /locus_tag="OQQ19_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator HmsP"
                     /protein_id="HCS1802228.1"
                     /translation="MRVSRSLTIKQMAMVAAVVLVFVFIFCTVLLFHLVQQNRYNTAT
                     QLESIARSVREPLSSAILKGDIPEAEAILASIKPAGVVSRADVVLPNQFQALRKSFIP
                     ERPVPVMVTRLFELPVQISLGVYSLERPANPQPIAYLVLQADSFRMYKFVMSTLSTLV
                     TIYLLLSLILTVAISWCINRLILHPLRNIARELNAIPAQELVGHQLALPRLHQDDEIG
                     MLVRSYNLNQQLLQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTTALMIIT
                     CETLRDTAGVLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHA
                     ITLGQQVLTIMSERLPIERIQLRPHCSIGVAMFYGDLTAEQLYSRAISAAFTARHKGK
                     NQIQFFDPQQMEAAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQ
                     QPDGSWDLPDGLIDRIECCGLMVTVGHWVLEESCRLLAAWQERGIMLPLSVNLSALQL
                     MHPNMVADMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDF
                     GMGYAGLRQLQHMKSLPIDVLKIDKMFVEGLPEDSSMIAAIIMLAQSLNLQMIAEGVE
                     TEAQRDWLAKAGVGIAQGFLFARPLPIKIFEESYLEEK"
     gene            27720..29006
                     /gene="dctA"
                     /locus_tag="OQQ19_000483"
     CDS             27720..29006
                     /gene="dctA"
                     /locus_tag="OQQ19_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DctC"
                     /protein_id="HCS1802229.1"
                     /translation="MKTSLFKSLYFQVLTAIAIGILLGHFYPEIGEQMKPLGDGFVKL
                     IKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPG
                     AGMNVDPATLDAKAVAVYADQAKDQGIVAFIMDVIPASVIGAFASGNILQVLLFAVLF
                     GFALHRLGSKGQLIFNVIESFSQVIFGIINMIMRLAPIGAFGAMAFTIGKYGVGTLVQ
                     LGQLIICFYITCILFVVLVLGSIAKATGFSIFKFIRYIREELLIVLGTSSSESALPRM
                     LDKMEKLGCRKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNSQMDIVHQITLLI
                     VLLLSSKGAAGVTGSGFIVLAATLSAVGHLPVAGLALILGIDRFMSEARALTNLVGNG
                     VATIVVAKWVKELDHKKLDDVLNNRAPDGKTHELSS"
     gene            29226..30710
                     /locus_tag="OQQ19_000484"
     CDS             29226..30710
                     /locus_tag="OQQ19_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HCS1802230.1"
                     /translation="MQGTKIRLLAGGLLMMATAGYVQADALQPDPAWQQGTLSNGLQW
                     QVLTTPQRPSDRVEIRLLVNTGSLAESTQQSGYSHAIPRIALTQSGGLDAAQARSLWQ
                     QGIDPKRPMPPVIVSYDTTLFNLSLPNNRNDLLKEALSYLANATGKLTITPETINHAL
                     QSQDMVATWPADTKEGWWRYRLKGSTLLGHDPADPLKQPVEAEKIKDFYQKWYTPDAM
                     TLLVVGNVDARSVVDQINKTFGELKGKRETPAPVPTLSPLRAEAVSIMTDAVRQDRLS
                     IMWDTPWQPIRESAALLRYWRADLAREALFWHVQQALSASNSKDIGLGFDCRVLYLRA
                     QCAINIESPNDKLNSNLNLVARELAKVRDKGLPEEEFNALVAQKKLELQKLFAAYARA
                     DTDILMGQRMRSLQNQVVDIAPEQYQKLRQDFLNSLTVEMLNQDLRQQLSNDMALILL
                     QPKGEPEFNMKALQAAWDQIMAPSTAAVATDDVHPEVTDIPPAQ"
     gene            complement(30806..31735)
                     /gene="kdgK"
                     /locus_tag="OQQ19_000485"
     CDS             complement(30806..31735)
                     /gene="kdgK"
                     /locus_tag="OQQ19_000485"
                     /EC_number="2.7.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417983.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxygluconokinase"
                     /protein_id="HCS1802231.1"
                     /translation="MSKKIAVIGECMIELSEKGADVKRGFGGDTLNTSVYIARQVDPA
                     ALTVHYVTALGTDSFSQQMLDAWHGENVDISLTQRMENRLPGLYYIETDSTGERTFYY
                     WRNEAAAKFWLESEQSTAICEELANFDYLYLSGISLAILSPTSREKLLSLLRECRANG
                     GKVIFDNNYRPRLWASKEETQQVYQQMLECTDIAFLTLDDEDALWGQQPVEDVIARTH
                     NAGVKEVVVKRGADSCLVSIAGEGLVDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLT
                     GGSAENAAKRGHLTASTVIQYRGAIIPREAMPA"
     gene            31967..32734
                     /gene="pdeH"
                     /locus_tag="OQQ19_000486"
     CDS             31967..32734
                     /gene="pdeH"
                     /locus_tag="OQQ19_000486"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417982.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase"
                     /protein_id="HCS1802232.1"
                     /translation="MIRQVIQRISNPEASIESLQERRFWLQCERAYTWQPIYQTCGRL
                     MAVELLTVVTHPLNPSQRLPPDRYFTEITVSHRMEVVKEQIDLLAQKADFFIEHGLLA
                     SVNIDGPTLIALRQQPKILRQIERLPWLRFELVEHIRLPKDSTFASMCEFGPLWLGDF
                     GTGMANFSALSEVRYDYIKIARELFVMLRQSPEGRTLFSQLLHLMNRYCRGVIVEGVE
                     TPEEWRDVQNSPAFAAQGWFLSRPAPIETLNTAVLAL"
     gene            32804..34864
                     /locus_tag="OQQ19_000487"
     CDS             32804..34864
                     /locus_tag="OQQ19_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417981.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HCS1802233.1"
                     /translation="MSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSA
                     ELNRPFAIRGDLGVVWERQKQETGWRSWVPWPHVHAEDIILGNPPDIPEVTMVHLPRV
                     EATLAPLALLTKTVWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWS
                     FRLDNILFDQGRIAIDDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYVFG
                     LKAQGRYNGEPLTGTGKIGGMLALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGG
                     VDLRLKFSGDSLGDLYELTGVLLPDTPPFETDGRLVAKIDTEKSSVFDYRGFNGRIGD
                     SDIHGSLVYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKS
                     VQPAGKVLPYDRFETDKWDVMDADVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQP
                     LKFGMAGGSIAANIHLEGDKKPMQGRADIQARRLKLKELMPDVELMQKTLGEMNGDAE
                     LRGSGNSVAALLGNSNGNLKLLMNDGLVSRNLMEIVGLNVGNYIVGAIFGDDEVRVNC
                     AAANLNIANGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSP
                     LYVRGTFKNPQAGVKAGPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILS
                     QMKK"
     gene            complement(35098..36420)
                     /locus_tag="OQQ19_000488"
     CDS             complement(35098..36420)
                     /locus_tag="OQQ19_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HCS1802234.1"
                     /translation="MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATA
                     AVIVFPHIFFPQGDPTAATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLL
                     TMGISTVVIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRA
                     LYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVS
                     LHESPVFEKVAKAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFST
                     AAAPVGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLLILFALF
                     AFNPLLGSGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVSSI
                     LGASVAPYIAAWLQTNYGLGAVGLYLAAMAGLTLIALLLTHETQHQSL"
     gene            complement(36831..37844)
                     /gene="yhjD"
                     /locus_tag="OQQ19_000489"
     CDS             complement(36831..37844)
                     /gene="yhjD"
                     /locus_tag="OQQ19_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YhjD"
                     /protein_id="HCS1802235.1"
                     /translation="MTQENEIKRPTQDLEHEPIKQLDNSEKGGKVSQALETVTTTAEK
                     VQRQPVIAHLIRATERFNDRLGNQFGAAITYFSFLSMIPILMVSFAAGGFVLASHPML
                     LQDIFDKILQNISDPTLAATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAI
                     RAQSRDVWERSPQDQEKFWVKYLRDFISLIGLLIALIVTLSITSVAGSAQQMIISALH
                     LNSIEWLKPTWRLIGLAISIFANYLLFFWIFWRLPRHRPRKKALIRGTFLAAIGFEVI
                     KIVMTYTLPSLMKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGK
                     TQP"
     gene            complement(37893..38792)
                     /locus_tag="OQQ19_000490"
     CDS             complement(37893..38792)
                     /locus_tag="OQQ19_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417978.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1802236.1"
                     /translation="MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQL
                     GTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGI
                     AKNLLLPRLSEFLYLHPGIELELSSHDRPVDILHDGFDCVIRTGALPEDGVIARPLGK
                     LTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKSGG
                     MLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQR
                     RELSRRVNLFMQWLAGVMKEHLD"
     gene            39312..39914
                     /locus_tag="OQQ19_000491"
     CDS             39312..39914
                     /locus_tag="OQQ19_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HCS1802237.1"
                     /translation="MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLES
                     YPEALVMLDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVP
                     RDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNK
                     EIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS"
     gene            complement(39965..41614)
                     /locus_tag="OQQ19_000492"
     CDS             complement(39965..41614)
                     /locus_tag="OQQ19_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalase"
                     /protein_id="HCS1802238.1"
                     /translation="MLNQKIQNPNPDELMIEVDLCYELDPYELKLDEMIEAEPEPEMI
                     EGLPASDALTPADRYLELFEHVQSAKIFPDSKTFPDCAPKMDPLDILIRYRKVRRHRD
                     FDLRKFVENHFWLPEVYSSEYVSDPQNSLKEHIDQLWPVLTREPQDHIPWSSLLALPQ
                     SYIVPGGRFSETYYWDSYFTMLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYY
                     LSRSQPPVFALMVELFEEDGVRGARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMP
                     DGSLLNRYWDDRDTPRDESWLEDVETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRD
                     TGRLASIRTTQFIPIDLNAFLFKLESAIANISALKGEKETEALFRQKASARRDAVKRY
                     LWDDENGIYRDYDWRREQLALFSAAAIVPLYVGMANHEQADRLANAVRSRLLTPGGIL
                     ASEYETGEQWDKPNGWAPLQWMAIQGFKMYGDDLLGDEIARSWLKTVNQFYLEQHKLI
                     EKYHIADGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP"
     gene            42018..43415
                     /gene="ccp"
                     /locus_tag="OQQ19_000493"
     CDS             42018..43415
                     /gene="ccp"
                     /locus_tag="OQQ19_000493"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c peroxidase"
                     /protein_id="HCS1802239.1"
                     /translation="MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAV
                     SENNKVLGFLREKGCDYCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAAL
                     LADKPVSQSDLNKIEWVMQYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYA
                     SNDTAPEHRNEPVQPIPQKLPTDAQKVALGFALYHDPRLSADSTISCAHCHALNAGGV
                     DGRKTSIGVGGAVGPINAPTVFNSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSW
                     DEIIAKLEKDPQLKAQFLEVYPQGFSGENITDAIAEFEKTLITPDSPFDKWLRGDENA
                     LTAQQKKGYQLFKDNKCATCHGGIILGGRSFEPLGLKKDFNFGEITAADIGRMNVTKE
                     ERDKLRQKVPGLRNVALTAPYFHRGDVPTLDGAVKLMLRYQVGKELPQEDVDDIVAFL
                     HSLNGVYTPYMQDKQ"
     gene            43626..>43867
                     /locus_tag="OQQ19_000494"
     CDS             43626..>43867
                     /locus_tag="OQQ19_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HCS1802240.1"
                     /translation="MDQKLLTDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQ
                     IINDELYLDGNARQNLATFCQTWDDENVHKLMDLSI"
BASE COUNT        10541 a        10995 c        11918 g        10413 t
ORIGIN      
        1 ccgttagcac taccggaaaa ttacccgctg ccggggatta tagcggtatt gctaccatac
       61 atgtcgaact ggagtaacag tcatgaagcg aacaatactt gcgttatgcc tgctgcctct
      121 ttccttttcg tcattcgcgg caaccacgga tttagggccg aaaggaacat tgaaattcac
      181 ccttaaaatc agccagggtg cttgcgaact ggtgaaagac agcgttgagg ttgacatggg
      241 caccgcggtt ctcaaaaagc cggtaagaat cggaacggaa attaatccca ctcctttttc
      301 catcggcctg aaaaactgta gcgaagtggt cagagcctac gtgactatgg acggtacacc
      361 caatgcagac gactcaaatc tttttgcgct ggatgcgggt ggcgctacag gcgttgggct
      421 gaaaatcaaa accgctgctg gagtacaaca gttcccggaa aatacaacgc cgataccggt
      481 tgagtttgca attaacggtg atggcgcaca tcaactgaac tatatcgcca gctacgtgcc
      541 tattcgcgcc gatgcaacta ttggtcgcgc agatgcaacg gtcgacttta ctgtacagta
      601 cagtacgaat aatttcacat cttaagggcc agttaactgg ccctttttac tgctttttgt
      661 aacgctaaag tctcttttca aacttgcatt tttgtaaatt tgtgcttcat gcacactctt
      721 tccccacact ttttcgcttt gctgtggtct acttattcgc gcgtgtagat tttacttatc
      781 tgactacctc cgcacttttc ccctgccggg cctgaaaagc cgctaagcag ggtgttatca
      841 cctgtttgtc cagggtttgt ttgcatgaga tacatcaaat cgattacaca gcagaagctg
      901 agctttttgc ttgcaatcta tattggcctt tttatgaatg gcgcggtttt ttatcgccgc
      961 ttcggcagct atgcgcacga ttttaccgtc tggaaaggcg tttctgctgt tgttgaactg
     1021 gccgccaccg tactggtgac cttcttttta ctacgtcttc tatcgctgtt tggccgccgc
     1081 agctggcgta ttctggcgtc gctggtggtg ctcttttccg caggtgccag ctattacatg
     1141 accttcctta atgtggtcat tggttatggc atcatcgctt ccgtcatgac caccgatatc
     1201 gacctgtcaa aagaagttgt tggtctgaac tttattctct ggttaatcgc cgttagtgca
     1261 ttgcctctta tccttatctg gaataaccgc tgtcgctaca ccttgctccg acaactgcga
     1321 accccagggc agcgtattcg cagcctggcg gtcgtcgtac tggcgggtat tatggtttgg
     1381 gcaccgattc gtttgctgga tatccagcag aagaaagtgg agagggcgac cggcgttgat
     1441 ttgccgagtt atggcggtgt cgtagcgaac tcttatctgc catcaaactg gctttctgcg
     1501 ttggggctgt atgcctgggc gcgggtcgat gaatcttccg ataataattc attgcttaat
     1561 ccggcgaaga agtttacata ccaggctcca caaaacgttg atgatactta tgtcgtgttt
     1621 atcatcggtg aaaccacgcg ttgggaccat atgggtattt tcggctatga gcgtaatacc
     1681 acgccgaaac tggcccagga gaaaaatctg gcggcgttcc gtggttactc ctgtgatacc
     1741 gcaaccaaac tctcactgcg ttgcatgttt gtacgtcagg ggggcgcgga agataatccg
     1801 cagcgcacat taaaagaaca gaacattttc gcggttctga agcagttagg attcagttct
     1861 gacctctacg ctatgcagag cgaaatgtgg ttctacagca acacgatggc ggacaacatt
     1921 gcttatcgtg agcagattgg tgcggagcca cgtaatcgtg gcaagccggt agatgatatg
     1981 ttgctggtag acgaaatgca gcaatcgcta gggcgcaacc cggatggtaa gcatctgatc
     2041 attctgcata ccaaaggttc gcattttaac tacacccagc gttatccgcg tagcttcgcg
     2101 cagtggaagc cggaatgtat tggtgttgat agcggctgta ccaaagcgca gatgatcaac
     2161 tcctatgaca actcggtgac ctatgtggat cactttatct ccagcgtgat tgatcaggtt
     2221 cgcgataaga aagcgattgt gttctacgca gctgaccacg gtgagtcaat taatgaacgc
     2281 gagcacctgc acggcacgcc gcgtgaattg gcaccgccgg agcagttccg cgtaccgatg
     2341 atggtctgga tgtcagataa atatctggaa aatccggcca atgcgcaggc atttgcgcag
     2401 ctgaaaaaag aagccgacat gaaagtgcca cgccgtcacg tagagctgta cgataccatc
     2461 atgggttgtc ttggctatac ttcaccggat ggtggaatta acgaaaacaa caactggtgt
     2521 cacatcccgc aggcaaaaga ggcagcggct aactaagcgg cctgctgact ttctcgccga
     2581 tcaaaaggca ttttgctatt aagggattga cgagggcgta tctgcgcagt aagatgcgcc
     2641 ccgcattcgg tgattggcgc agcctggtag cgcacttcgt tcgggacgaa ggggtcggag
     2701 gttcgaatcc tctatcaccg accaaattcg aaaagcctgc tcagcgagca ggcttttttg
     2761 catttgaagc ccatgaggat gagaacctcc gggggctggg aggttcgact cgacgtaggc
     2821 ctgataagac gcgccagcgt cgcatcaggc aacggcaccg cacttattgt cggatgcggc
     2881 gcgaccgcct tattcgacca acacaccaca cattttcctg ccaactttgc gccccatatc
     2941 tcactatcca ttaacggatt tgtgacagaa accattgtct ttttttatat ttgcttaaat
     3001 ctttttttgc gttacttatg gctggcgctg gcattttccg ctgtgcgttt tagcgttcat
     3061 ggtattaatc gctcagatat ccaccttttc ctcagatttt tttcattaaa tgcataaaac
     3121 ttaatcacca aatgttgcta aatattaagc tgattgttct ggttatgttg gagtagcaca
     3181 aatttctctg ctgcaaatag ctgtttgaag ttttttaatc tttgtttgtg ggttctcacc
     3241 gttggtgtaa atcccggttg gctgtattga cgttttcaca ttctgttgac agattgtagg
     3301 tcacgagggg cattttatgg aggatccgca ctgttacact gatgttaatt agtacggcat
     3361 ccccacctca taacgttgac ccgaccgggc aaaaaacaaa aaaggtcagg tagcgacaac
     3421 ccactgcaaa gggttaaaac aacaaacatc acaattggag cagaataatg cgtatttcct
     3481 tgaaaaagtc agggatgctg aagcttggtc tcagcctggt ggctatgacc gtcgcagcaa
     3541 gtgttcaggc taaaactctg gtttattgct cagaaggctc tccggaaggg tttaacccgc
     3601 agctgtttac ctccggcacc acctatgacg cctcttccgt accgctttat aaccgcctgg
     3661 ttgaatttaa aatcggcacc actgaagtga taccgggcct cgctgaaaag tgggaagtca
     3721 gctaagacgg taaaatctat accttccatc tgcgtaaagg tgtgaagtgg cacgacaata
     3781 aagaattcaa accgacgcgt gaactgaacg ccgatgacgt ggtgttctcg ttcgaccgtc
     3841 agaaaaacgc gcaaaacccg taccataaag tctctggcgg cagctacgaa tacttcgaag
     3901 gcatgggctt gccggagctg atcagtgaag tgaaaaaggt ggacgacaac acagttcagt
     3961 tcgtactgac tcgcccggaa gcgccgttcc tcgctgatct ggcaatggac ttcgcctcta
     4021 ttctgtcaaa agaatatgct gatgcgatga tgaaagccgg tacaccggaa aaactggacc
     4081 tcaacccaat cggaaccggt ccgttccagt tacagcagta ccaaaaagat tcccgtatcc
     4141 gctacaaagc gtttgatggc tactggggca ccaaaccgca gatcgatacg ctggtcttct
     4201 ctattacccc tgatgcttcc gtgcgttacg cgaaattgca gaagaatgaa tgccaggtga
     4261 tgccgtaccc gaacccggca gatatcgctc gcatgaagca ggataaatcc atcaacctga
     4321 tggaaatgcc ggggctgaac gtcggctacc tctcgtataa cgtgcagaaa aaaccgctgg
     4381 atgacgtgaa agttcgccag gcactgacct acgcggtgaa caaagacgcg atcatcaaag
     4441 cggtttatca gggcgcgggt gtatcagcga aaaacctgat cccgccaacc atgtggggct
     4501 ataacgacga cgttcaggat tacacctacg atcctgaaaa agcgaaagcc ttgctgaaag
     4561 aagcgggtct ggaaaaaggt ttctccatcg acctgtgggc gatgccggta caacgtccgt
     4621 ataacccgaa cgctcgctgc atggcggaga tgattcaggc agactgggcg aaagtgggcg
     4681 tgcaggccaa aatcgtcacc tacgaatggg gtgagtacct caagcgtgcg aaagatggcg
     4741 aacatcagac ggtaatgatg ggctggactg gcgataacgg ggacccggat aacttcttcg
     4801 ccaccctgtt cagctgcgcc gcctctgaac aaggttctaa ctactcaaaa tggtgctaca
     4861 aaccgtttga agatctgatt caaccggcgc gtgctaccga cgaccataac aaacgcgttg
     4921 aactgtacaa gcaatcgcag gtggtgatgc acgatcaggc tccggcactg atcatcgctc
     4981 actccaccgt gtttgaaccg gtacgcaaag aagtcaaagg ctatgtggtt gatccattag
     5041 gcaaacatca cttcgaaaat gtctctatcg aataattaaa agccatacaa gactgatggt
     5101 aaaggcaaaa ctgcctgatg tgctccgctt atcaggccta cgaaaattct gcaatgtatt
     5161 gaatttacac gattttgtag gccggataag gcgttaacgc cgcatccggc ataaacaaag
     5221 cgcactttgt caacaatctg tatacccggt ggcgctgtgc ctctgcgtgc agcgccatcc
     5281 ggcagcaata cttcattctc tgtccgacaa gggcgggaat tgatttgtga gcaatacaga
     5341 cacgcagttc caggctgcgg gtcactatag agaatccggg ttatgttgca gtttattctc
     5401 cgacgtttgg gactcgtcat ccccacgttt atcggtatta cccttctcac atttgccttt
     5461 gtccacatga tcccgggcga tccggtgatg atcatggcag gcgaacgtgg gatctcccct
     5521 gagcgtcacg cgcagctgct ggctgaactc ggcttagata aaccgatgtg gcagcagtat
     5581 ctccattaca tttggggcgt aatgcacggc gatctaggca tttcaatgaa aagccgaatt
     5641 ccagtatggg aagagttcgt gccgcgcttt caggccacgc tggaacttgg cgtctgcgcg
     5701 atgatttttg ctacggcagt cggtattccg gttggtgtgc tggctgcggt taaacgcggt
     5761 tccattttcg atcacactgc agttggcctg gcgctgaccg gctactcgat gccgatcttc
     5821 tggtggggca tgatgctgat catgctggtt tcggtgcact ggaacctgac gcccgcctcc
     5881 ggtcgcgtga gcgatatggt gttcctcgat gactccaatc cgttaaccgg ttttatgcta
     5941 atcgacaccg ccatctgggg tgaagacggc aactttatcg atgccgtcgc ccatatgatc
     6001 ttgcctgcca ttgtgctggg tactattccg ctggcggtca ttgtgcgtat gacacgctcc
     6061 tcgatgctgg aagtgctggg cgaggattac atccgcaccg cgcgcgccaa agggctaacc
     6121 cgcatgcggg tgattatcgt ccatgcgctg cgtaacgcga tgctgccggt ggtgaccgtt
     6181 atcggcctgc aggtgggaac attgctggcg ggggcgattc tgaccgaaac catcttctcg
     6241 tggcccggtc tgggacgctg gttgattgac gcactgcaac gccgcgacta tccggtagtg
     6301 cagggcggcg tattgctggt ggcgacgatg attatcctcg tcaacttgct ggtcgatctg
     6361 ctgtacggcg tggtgaaccc gcgtattcgt cataagaagt aaggggacat catgtcacag
     6421 gttactgaaa ataaagtgat tagcgcaccg gtgccgatga ccccgttaca ggagttctgg
     6481 cactatttta aacgcaacaa aggcgcggtc gtcgggctgg tttacgtcgt catcgtgctg
     6541 ttcatcgcga tctttgccaa ctggattgca ccctataacc cggcggaaca gttccgcgat
     6601 gcactgctcg ccccgccagc ctggcaggaa ggcggcagca tggcgcactt gctgggcacc
     6661 gatgacgtag gccgtgatat gctgtcgcgc ctgatgtacg gtgcgcgcct gtcgctgctg
     6721 gttggctgtc tggtagttgt gttatcgctg attatgggcg ttattctcgg cctgatcgcc
     6781 ggttactttg gcggcctagt cgataacatc attatgcgcg tggtcgatat catgctggcg
     6841 ctgccaagtc tgctgctggc gctggtgctg gtggcaattt tcggcccgtc gattggtaac
     6901 gccgcgctgg cactgacctt cgttgccttg ccgcactatg tgcgcttaac ccgcgccgcc
     6961 gtgctggtgg aagttaaccg cgattacgtc accgcgtctc gcgtggcggg tgccggggcg
     7021 atgcgtcaga tgtttattaa catcttcccg aactgccttg cgccgctgat tgttcaggcg
     7081 tcgctcggtt tctctaacgc cattctcgat atggctgctc ttggtttcct cggcatgggg
     7141 gcacagccgc caacgccgga gtggggcacc atgctctccg acgtgttgca gttcgcgcaa
     7201 agcgcctggt gggtcgtgac cttcccgggt ctggcgatcc tgctgacggt gctggcattt
     7261 aacctgatgg gtgacggtct gcgtgacgcg ctcgatccca aactgaagca gtaagaggtt
     7321 cgagatggcg ttattaaatg tagataaatt atcggtgcat ttcggcgacg aaagcgcacc
     7381 gttccgcgcc gtagaccgca tcagctacag cgtaaaacag ggcgaagtgg ttgggattgt
     7441 gggtgagtcc ggctccggta agtcggtcag ttccctggcg attatggggc tgattgatta
     7501 tccgggccgc gtaatggcgg aaaaactggt gtttaacggt caggatttgc agcgtatatc
     7561 agaaaaagag cgccgcaacc tggtgggtgc cgaagtggcg atgatcttcc aggacccgat
     7621 gaccagcctt aacccgtgct acaccgtggg tttccagatc atggaagcga ttaaggtgca
     7681 tcagggcggc aacaaaagta cccgccgtca gcgggcgatt gacctgctga atcaggtcgg
     7741 tattcccgat ccggcttcgc gtctggatgt ttacccgcat cagctttccg gcggcatgag
     7801 ccagcgcgtg atgatcgcca tggcgattgc ctgtcgacca aaactgctga ttgccgatga
     7861 gccgaccacc gcgctggacg tgaccattca ggcgcaaatc atcgaactac tgctggagct
     7921 acagcagaaa gagaacatgg cgctggtgtt gattacccat gacctggcgc tggtggcgga
     7981 agctgcgcat aaaatcattg tgatgtatgc aggccaggtg gtggaaacgg gcgatgcgca
     8041 cgccatcttc catgcgccgc gtcacccgta tactcaggca ttgctgcgtg cgctgccaga
     8101 atttgctcag gacaaagaac gtctggcgtc gttgccaggt gtcgttcccg gcaagtacga
     8161 ccgcccgaac ggctgcctgc ttaacccgcg ctgcccctat gccactgaca gatgtcgcgc
     8221 tgaagaaccg gcgctgaata tgctcgctga cgggcgtcag tccaaatgcc attacccact
     8281 tgatgatgcc gggaggccga cactatgagt acgcaagagg ccaccctgca acaaccgctg
     8341 ttgcaggcta tcgacctgaa aaaacattat ccggtgaaga aaggcatgtt cgcgccggaa
     8401 cgtctggtta aagcgctgga tggcgtttcg tttaaccttg aacgtggcaa aacgctggca
     8461 gtagtgggcg aatctggctg cggtaaatcg accctcggtc ggttgctgac gatgattgaa
     8521 acgcccaccg gtggcgagct gtattaccag gggcaggatc tgcttaagca cgatccgcag
     8581 gcgcagaagc tgcgtcggca gaaaatccag atcgtcttcc agaaccctta cggttcgctg
     8641 aatccgcgta aaaaagtcgg gcaaattctt gaagagccgc tgctgatcaa caccagctta
     8701 agcaaagaac agcgtcggga aaaagccctg tcgatgatgg cgaaagtcgg cctgaaaacc
     8761 gagcactatg accgctatcc gcatatgttc tccggcggtc agcgtcagcg tatcgccatc
     8821 gcccgtggtc tgatgctcga cccggatgtg gtgattgccg atgaaccggt ttccgcgctg
     8881 gatgtttcag tgcgcgcgca ggtgctgaat ctgatgatgg atttgcagca ggagttgggg
     8941 ctgtcttatg tctttatctc ccacgacctg tcggtggtgg agcacattgc tgatgaagtg
     9001 atggtgatgt acctgggccg ctgcgtggag aagggaacga aagaccaaat cttcaataac
     9061 ccgcgccatc cgtacactca ggcgctactt tccgcgacgc cgcgcctgaa cccggacgat
     9121 cgccgcgagc gcatcaagct cagcggtgaa ctaccaagcc cactgaatcc accgccgggt
     9181 tgcgccttca acgcccgctg tcgtcggcgc ttcggcccct gcacccagtt gcagccgcag
     9241 ctaaaagact acggcggtca actggtagct tgttttgctg ttgatcagga tgaaaatccg
     9301 cagcgttaac tcacaaaacc ggggccatgc gctccggttt actcaatcag cttcaacagt
     9361 ggcgacaagc atagcaaaat gccgtaaagc agaattagcc aggctttaaa tccgcgaagt
     9421 ttttccagtt gtgcgacttt atagatcagg aaaaacggaa tgaggcacga cacaatgcca
     9481 tataacgggc ttcccaactg aaagaacacc agcaccgata cacgaaacga aacccaaatc
     9541 gtcaacgtaa tgacgataaa agcgcagatc gccagagtca gcatgcgtga gttaattttc
     9601 ttggtatcaa taattcggct taacagattg agaataatgc ctttaatagc ctcgtggaaa
     9661 ccgagataaa tgccaaagaa tgcggtcagt acggcaaaga tattcagcac cgtagaggtg
     9721 atatgaatga tatgtccagg gatcacctgc gcggccagtg ccagtgccga gatattttgt
     9781 tcaaaggcag aaacggcttc ttcgtggcta attgagaagg taaacgaaaa ggcaaaaaac
     9841 aggatcaccg cgatgagcgt gatataacta attcggtggg tacgcagcgc gagccgggtt
     9901 gccagtactt tatctgcttc ccgtttacga taggcaatat tcattgggtt aagtacctga
     9961 ataaataccg cagaaaagaa gcaaaatgga attgtaagca ggacatcgcg gaaaaagacg
    10021 gaggcttgcg ggaaggcggt tatattggcg aaattccagt gcgggatcat cgcaaaaccg
    10081 aacacgacaa taatccctac tttgaccacc accattggcc cggaaatctt aaacagtaat
    10141 cgttcaccac cagacgcaat cgctaccagt acggcgaaaa tagcgacttt ataaagtaga
    10201 gattgtgaaa gatcggcatc ggttaaaccg aaggttttca ggtacgaggc gctgtcgaaa
    10261 accacggaga gagagtagat aaaaatcccg tggataatca tcaaaaagta gataaccccg
    10321 aggaaaattc cccagttctt ccccaggtaa tgactgataa tatcggtgta gtcattacag
    10381 gaatcgcttt cagaaagggt ttttaaataa atgtcctgca ctacccaggt ggcaggataa
    10441 gcaatgatcg ctgcggtaat aaatacccaa attcccttca agccaatttg tactggcatc
    10501 agcacggttc cggcaccaat cgccatgcct atgcataata aaacccagcc gaagtcgtag
    10561 cgtgtaaacg gcaatttctg attgtgtttc gatagtgtgt tgtgctgcat aaagtcctgt
    10621 ccagaaagaa gtcggcctcg caaaaatgaa taaacccagt ttctcttgcg caacaggtgg
    10681 agaagtcgaa tacgcagtat gtaaaaaatg aggcaacaga ttcactgggg aggtcgcgag
    10741 gaggcgcaat tctacaaaat tgcgcatttc actaccagtc tggagtcagc ccggatatga
    10801 actgcaacta ttgcaaataa agaaattaag ctggaaggca tcgcgcaatg aggaagattg
    10861 ccgggtgctg acagtaaaaa gcaatcgtaa aatcagcggc aagccgaaag ggttccggtg
    10921 aggcgcaatg ttgcgggggc tttatccctg gtggcattgg ttgctggaga gagaaaaccc
    10981 ccgcacgttg caggtatgca cctgacaaca tcacgggggc taatcttgaa cccaaacaac
    11041 tcaagaatag ccgcgaaacg ttggcattac aacacaggcg gctatatgac gctcgcagaa
    11101 ctgggcatgg ccttctggca tgatttagcg gctccggtca ttgctggcat tcttgccagt
    11161 atgatcgtga actggctgaa taagcggaag taacgtgtca tgcgggcgtc aggctgccgt
    11221 aatggcaatt tgcgcccgga tcaggccgca gaggttaaac tctgcggcct ttttcgtgct
    11281 tactgcgggt aaggcaccca gtcgccgccg ttcaggcgaa cgtacggttt atcctggtat
    11341 tgaataacta ctgcatttga gttctcggag accggtgctg tttgtggcaa cccactggtg
    11401 agttttttcc agtcaacatt gtcttcggtg aaaatcttgc catcaagaac gcgaaccacc
    11461 agatcggaga tagccaggaa gctgctcggt tggtcgatga caatcggtgc cccctgatgt
    11521 ggtgccttca tgccgaagaa tttcacccca acggggacgt ctgtgataga cgggctaggg
    11581 atatcacgta ggccagatac ctgcattctg tcgcccttca gcgcgccgcc gtgttccggc
    11641 accacgacca ccatcacttt acgacccgat ttctccagtt cagtaaagaa ggcgtccagt
    11701 tcatcaaaga atttctgcgc ccgcgctttg taatccgctg ttttgctgac ccccggataa
    11761 tggttgccgt catgcagtgg aagcgtgttg tagaacgtgg cactacggct gtttttatct
    11821 ttttcgataa cgtccagcca gcggttaagc acggtggtat cgtcataaac cggcgaacca
    11881 tcaaagccca gcaaaataac cggcagattt gtttgatcca tcaattcagt ctgcatgccg
    11941 ccattttcgc gaacttcttt caaaaaaccg ccgaactggc cgttatgtcc catcatcagg
    12001 tgctgggtaa agcccagttt cgaaaggtta tcaaacagat agcagtcgtt atttgccggt
    12061 tgatacagat tagtgtgcga agtctgcccg cagctggcgc gcagtaaacg gatcgccgcc
    12121 gggccactgt aggaggtggc ggagttaaag ttcttgaact caatatcgaa atgcgaccac
    12181 agtggatgcg acatcaaccc ggcggcttct atatccgacc aggaaagcga acagatgtta
    12241 atcaccagta gttcaaatgg ctgagcatca gcgggcagcg aagacgggaa ggtcgattta
    12301 cgtttcgcct ccgcgttata gaaattattc agccaggcgt taaggttcgc cgttgttggc
    12361 ggtgtagttt gtgcgggcat atcacccact accggtgcgc cacccgtcgt ctcaacggtt
    12421 gccgctgcgt taccacccgt cgttgttaca gtggtcgtcg gttgtccggc tggccacaag
    12481 gagaaacttg gtcccgccag ggtaagtacg ttcagccata gcagtatggc aaccacaaaa
    12541 acggtaatgc gaatccattg tgacaggaat aaccaggcca ctaataaaac aaaaatggcc
    12601 ccaatcatct gccagttaat aaagcgtgtg acaaggtcga ttaaataatc ggtactgaac
    12661 cccgccacct gcgaaccctg gctcattatg ctttccgggc caggcaacca ggtgtcatgc
    12721 cagaacaaag caaagccgat cggcagggca atccagtggc gcaagcgatg caggctgtag
    12781 cgcggaatgg gcatcagcag aaacgcggca aacaccaaat tgaggagcgg atggaagtta
    12841 agatatcccg cccacaacag gccgaactta accagaaaat agaagttcca gccggaaagg
    12901 ccgcgccagt attgccagag ggaagaaggc atggcggtat tttgcgtaaa ttgagtcatt
    12961 ttttggttgc cctggctttt tccgtgcggc gtaatgtccc ggctggttta acataacgag
    13021 gtttagcaaa gaacaaacgt aaggtgtcgc gaatgcgtcg caaagagtgc cgcgccagat
    13081 agcccagcgg gaaaaatatc agtgcgcaaa cgacaataat ttcaatgata tcgctgatgg
    13141 tcatcatgat gagcgctcca cagcatcatc taacagtcgc atgggttctg gtattcgtcg
    13201 ccagtggcga ccatcgtgct cggcattgat gaccggttta gaactttgcg ttaaaggcag
    13261 cggcatgccc cattgttctg gggcaagcag gcgcatctgc accagctcgg cactgatttg
    13321 atcatcttca aaccagacca tacggtttga gaaaatgtcg ccagtaggca atgggaaaat
    13381 atgattcaac gcggtatcca gatcgttaat ccgacagaat gagagaaaca gcaccagccg
    13441 attaccgcca atggtcatga tatcgccggt acggttaggg cgacacagcg tcagggcttg
    13501 ttcaacgcgg atacccggta ccggacgtag ggcaaccaga acgcctttac cgtgggcagg
    13561 taatagaggg ttattcatca tgttgttgac ggcattacag aacacatccc acttctggaa
    13621 accacgcagt ttgagcggct gggtcattga cagcaaggta gtgatatctt ccggcacata
    13681 gcgactaaac ttctgccctt gcacgctttc gatcatcgtc agacaacggg agagtggcgc
    13741 attccacgga ataaccatat ttgcaccgca ggccaataac aaacgttcat cggtggcgcg
    13801 caggctagcg gtattttccc gcacgaggat tttcatcgca ctaccgcgct ggcgacgcag
    13861 ggtatgaatg ctgcgggcca gtggctcgat ttgcgcattt tgctgtaaag aaaagaccac
    13921 cgtcgccgcc tgagcggtac gggcttcatt gaacaggact tcgttattgt tgaacagttg
    13981 ccagtgttcc gatagcggcg gcgcaccttc cagtacagca acattactca gaatgcgttt
    14041 ttcgtcgctg cgtggttgga tctccgcctc ttcgctttga actaatgtcc agataccatt
    14101 ttgttgctga acgctaagct gctgacgggc gctgacccct ttttcgttgc accagaaggc
    14161 aatatccagc aaatgttggt caccctgaaa acgcaaactg gcaagaccaa aaagtgaacg
    14221 gtattcctca agcaacaatg aaaattgttt atcgttatta tttccgggat taattaccaa
    14281 aagcgaacaa tgggttaacc tgctccattt attcatttta tccaaccatg agcgaagccg
    14341 ctcggcagga atgttttgcc atgcgttatt tgcgcaaaca agaataaaaa ggtaattatg
    14401 gggatcaata gaacactgca aatcacgggt caaatagtat agaccttttt catgatttag
    14461 cattgaaaat aattttattt tttccggccc ttgataatca tctaattgaa agattttcgc
    14521 cggatcgctg tccatgctaa tgaccgcgac gtgtgcggtt tcagcctggg atgcaattgt
    14581 ttgattcgcc agactgatag catcttcatg gcgatcgacg ttaaaccacc agacgccgcc
    14641 tgctggcata tgtcgcagct catcccataa tgatgagata ccgatagaga atacagggcc
    14701 cacaatgtcc ctcatgtcac cattttgtct gattatcagt ttactagcga aagctaagaa
    14761 ataaacctac cattgaaatt aaaacttatc agatttagca tgtgaatcaa tttagaagat
    14821 cacaagacgt gtgattttag tcttttcgtt tttaactttt tctgttgcgt aacggaaagt
    14881 caaaaagtga gcaaattccc gtctcgccgt aaacaataaa ccggcgaaat gctcacggtt
    14941 agaattgtct catgaacggt acggttattt catagggatc aagcaaaatg aataacaatg
    15001 aaccagatac tctgcctgat cccgcgatag gctatatctt ccagaatgat attgtggcgt
    15061 taaagcaggc attttcactg cctgatattg attatgccga tatttcccaa cgcgaacagt
    15121 tggccgcggc attaaaacgc tggccgttgc tggcagagtt tgcgcaacaa aagtagggga
    15181 ttggtgaatg gccgtactgg gattgcaggg ggtgcgggga ggcgtgggga caacaaccat
    15241 caccgccgca ttagcctggt cattacaaat gttgggagaa aatgtcctgg tggtcgatgc
    15301 ctgcccggac aacttgttgc gcctgtcatt taatgttgat tttacccacc gtcagggctg
    15361 ggccagagcg atgctggatg gccaggactg gcgtgacgct gggttgcgct acacctcgca
    15421 gctcgatttg ctgccttttg gtcagttatc cattgaagaa caagaaaatc cacagcacag
    15481 gcaaacccgg ctgagcgata tttgctccgg cttacagcaa ctaaaagcca gcgggcgtta
    15541 ccagtggatt ttaatcgact taccgcgtga tgcctcgcag ataacccacc agctgctgag
    15601 tttgtgcgat cactcgctgg caatcgtcaa tgtggatgcc aactgccata tccgactgca
    15661 tcagcaagcg ctgccggatg gcgcacatat tttgattaat gacttccgta ttggcagtca
    15721 ggttcaggac gatatttacc agctttggtt gcaaagccag cgccgattac tgccgatgct
    15781 cattcatcgt gatgaagcga tagctgaatg cctggcggct aagcaaccag taggtgaata
    15841 tcgcagtgat gcgctggcgg ctgaagagat actgacgctg gcgaactggt gcctgttgaa
    15901 ctactccggg ctgaaaacgc cagtcgggag tgcatcatga gtatcctgac ccggtggttg
    15961 cttatcccgc cggtcaacgc gcggcttatc gggcgttatc gcgattatcg tcgtcacggt
    16021 gcgtcggctt tcagcgcgac gctcggctgt ttctggatga tcctggcctg gatttttatt
    16081 ccgctggagc acccgcgctg gcagcgtatt cgcgcagaac ataaaaacct gtatccgcat
    16141 atcaacgcct cgcgtccgct ggacccggtc cgttatctca ttcaaacatg ctggttactg
    16201 atcggtacat cgcgcaaaga aacgccgaaa ccgcgcaggc gggcattttc aggtctgcag
    16261 aatattcgtg gacgttacca tcaatggatg aacgagctgc ctgagcgcgt tagccataaa
    16321 acacagcatc ttgatgagaa aaaagagctc ggtcatttga gtgccggggc gcggcggttg
    16381 atcctcggta tcatcgtcac cttctcgctg attctggcgt taatctgcgt tactcaaccg
    16441 tttaacccgc tggcgcagtt tatcttcctg atgctgctgt ggggtgtagc gctgatcgta
    16501 cggcggatgc cggggcgctt ctcggcgcta atgttgattg tgctgtcgct gaccgtttct
    16561 tgccgttata tctggtggcg ttacacctct acgctgaact gggacgatcc ggtcagcctg
    16621 gtgtgcgggc ttattctgct cttcgctgaa acgtacgcgt ggattgtgct ggtgctcggc
    16681 tacttccagg tcgtatggcc gctgaatcgt cagccggtgc cattgccgaa agatatgtcg
    16741 ctgtggccgt cggtggatat ctttgtcccg acttacaacg aagatctcaa cgtggtgaaa
    16801 aataccattt acgcctcgct gggtatcgac tggccgaaag acaaactgaa catctggatc
    16861 ctcgatgacg gcggcaggga agagtttcgc cagtttgcgc aaaacgtggg ggtgaaatat
    16921 atcgcccgca ccactcatga acatgcgaaa gcgggcaaca tcaacaatgc gctgaaatat
    16981 gccaaaggcg agttcgtatc gattttcgac tgcgaccacg taccaacgcg atcgttcctg
    17041 caaatgacca tgggctggtt cctgaaagag aaacagctgg cgatgatgca gacgccgcac
    17101 cacttcttct cgccggaccc gtttgaacgc aacctggggc gttttcgtaa aacgccgaac
    17161 gaaggcacgc tgttctatgg tctggtgcag gatggcaacg atatgtggga cgccactttc
    17221 ttctgcggtt cctgtgcagt aattcgtcgc aaaccattgg atgaaattgg cggtattgct
    17281 gtcgaaacgg taaccgaaga tgcgcacacg tctctgcgcc tgcaccgtcg tggctacacc
    17341 tctgcatata tgcgtattcc gcaggcggcg gggctggcga ccgaaagtct gtcggcgcat
    17401 atcggtcagc gtattcgctg ggcacgcggg atggtgcaaa tcttccgtct cgataacccg
    17461 cttaccggta aagggctgaa attcgcccag cggctgtgct acgtcaacgc catgttccac
    17521 ttcttgtcgg gcattccacg actgatcttc ctgactgcgc cgctggcgtt cctgctgctt
    17581 catgcctaca tcatctatgc gccagcgttg atgatcgccc tgttcgtgct gccgcatatg
    17641 atccatgcca gcctgaccaa ctcgaagatc cagggcaaat atcgccactc tttctggagt
    17701 gaaatctacg aaacggtgct ggcgtggtat atcgcaccac cgacgctggt ggcgctgatt
    17761 aacccgcaca aaggcaaatt taacgtcacc gccaaaggtg gactggtgga agaagagtac
    17821 gtcgactggg tgatctcgcg gccctacatc ttccttgttc tgctcaacct ggtgggtgtt
    17881 gcggtcggca tctggcgcta cttctatggc ccgccaaccg agatgctcac cgtggtcgtc
    17941 agtatggtgt gggtgttcta caacctgatt gttcttggcg gcgcagttgc ggtatcggta
    18001 gaaagcaaac aggtacgccg atcgcaccgc gtggagatga cgatgcccgc ggcaattgcc
    18061 cgcgaagatg gtcacctctt ttcgtgtacc gttcaggatt tctccgacgg tggtttgggg
    18121 atcaagatca acggtcaggc gcagattctg gaagggcaga aagtgaatct gttgcttaaa
    18181 cgcggtcagc aggaatacgt cttcccgacc caggtggcgc gcgtgatggg taatgaagtt
    18241 gggctgaaat taatgccgct caccacccag caacatatcg attttgtgca gtgtacgttt
    18301 gcccgtgcgg atacatgggc gctctggcag gacagctacc cggaagataa gccgctggaa
    18361 agtctgctgg atattctgaa gctcggcttc cgtggctacc gccatctggc ggagtttgcg
    18421 ccttcttcgg tgaagggcat attccgtgtg ctgacttctc tggtttcctg ggttgtatcg
    18481 tttattctgc gccgcccgga gcggagcgaa acggcacaac catcggatca ggctttggct
    18541 caacaatgat gataacgcga tgaaaagaaa actattctgg atttgtgcag tggctatggg
    18601 gatgagtgcg ttcccctctt tcatgacgca ggcgacgcca gcaacgcaac cactgatcaa
    18661 tgctgagcca gctgtagccg cccagacgga acaaaatccg caggtggggc aagtgatgcc
    18721 gggcgtgcag ggcgctgatg cgccagtcgt ggcgcagaac ggtccttcgc gtgatgtgaa
    18781 gctgaccttt gcgcaaattg cgcctccgcc gggtagcatg gtgctacgtg gcattaaccc
    18841 gaacggcagc attgagtttg gtatgcgcag cgatgaagtg gtgacgaagg cgatgctcaa
    18901 cctcgaatac atgccatcgc catcgttact gcctgtccag tcgcagttaa aggtttatct
    18961 caatgatgag ctgatgggcg tactgccagt gaccaaagaa cagttgggta aaaaaacgct
    19021 ggcgcaaatg cccattaacc cactgtttat taccgacttc aaccgtgtgc ggctggagtt
    19081 tgtcggccat tatcaggacg tgtgcgaaaa cccggccagc accacgcttt ggctggatgt
    19141 tgggcggagc agtggactgg atctgaccta tcagaccctg aatgtgaaga atgacctgtc
    19201 acacttcccg gtgccattct ttgacccgcg cgataaccgt actaacacct tgccgatggt
    19261 ctttgcgggt gcgccggatg ttgggctgca acaagcatct gccattgtcg cctcgtggtt
    19321 tggttcgcgt tctggctggc gtgggcagaa cttcccggtg ctctataacc aactgccgga
    19381 tcgtaatgcc attgtctttg caaccaacga caaacggccg gacttcctgc gcgatcatcc
    19441 ggcggtaaaa gccccggtga ttgagatgat caaccatccg cagaatcctt acgtcaaact
    19501 gctggtggtg tttggtcgtg acgacaaaga cctgttgcag gcagcgaaag gtatcgctca
    19561 gggtaacatt ctgttccgtg gtgaaagcgt ggtagtgaat gaagtgaaac cgctgctacc
    19621 gcgtaagccg tacgatgcgc cgaactgggt acgtaccgat cgtccggtca catttggcga
    19681 actgaaaacc tatgaagaac agttacaatc cagcggtctt gagccagcag cgattaacgt
    19741 ttcgctaaac ctgccgccgg atctctacct gatgcgcagt accggcattg atatggatat
    19801 taattaccgc tacaccatgc cgccggtgaa agacagttcg cggatggata tcagcctgaa
    19861 taaccagttc ctgcaatcct tcaacctgag cagcaaacag gaggcgaacc gcctgctgct
    19921 gcggattccg gtattacaag gtttgctgga tggcaaaaca gatgtctcta ttccggcgct
    19981 gaaactgggc gcgaccaacc agctgcgctt cgactttgag tatatgaacc cgatgccggg
    20041 cggttcggtg gataactgta ttaccttcca gccggtgcag aatcatgtgg tgattggtga
    20101 cgactccacc atcgacttct cgaagtatta ccacttcatc ccgatgccgg atctacgcgc
    20161 ctttgctaac gcgggcttcc cattcagccg gatggcggat ctgtcgcaaa ccatcaccgt
    20221 gatgccgaaa gcgcctaacg aagcacagat ggaaacgttg ctgaatactg ttggttttat
    20281 cggcgcacag acgggcttcc cggcgattaa tctgacggtg accgatgatg gcagcaccat
    20341 tcagggcaaa gatgccgaca tcatgatcat cggtggtatc ccggacaaac tgaaagacga
    20401 taagcagatc gacctattgg tgcaggcgac cgaaagctgg gtgaaaacac cgatgcgcca
    20461 gaccccgttc cccggcattg tgccggacga gagcgatcgc gcggcagaaa cccggtcaac
    20521 gctgacctct tccggtgcga tggcggcggt gattggcttc cagtcgccgt ataacgacca
    20581 gcgcagcgtg attgcgctgt tggcagatag cccacgcggt tatgaaatgc ttaacgatgc
    20641 ggtgaacgat agcggcaaac gcgccaccat gttcggttcg gtcgcggtga tccgcgagtc
    20701 cggtatcaac agcctacgtg ttggcgacgt ttattacgta ggtcatctgc cgtggttcga
    20761 gcgcgtgtgg tatgcgctgg caaaccatcc gattctgctg gcggtgctgg cggctatcag
    20821 tgtgatattg ctggcatggg tactgtggcg tctgctgcga attattagtc gtcgtcgtct
    20881 taacccggat aacgagtaat tgaagatgaa tgtgttgcgt agtggaatcg tgacgatgct
    20941 gttgttggct gcctttagtg ttcaggcagc ctgtacctgg cctgcctggg agcagtttaa
    21001 aaaggattac atcagtcagg aagggcgcgt catcgacccc agcgacgcgc gcaaaatcac
    21061 cacctccgaa gggcaaagtt acggtatgtt ctttgccctg gcggctaacg accgtgcagc
    21121 tttcgataat attctcgact ggacgcagaa caatctcgct cagggttctt taaaagaacg
    21181 tttgcccgcc tggctgtggg gcaagaaaga gaacagtaag tgggaagtgc tggacagcaa
    21241 ttcggcctcc gatggtgatg tctggatggc ctggtcgttg ctggaggcgg ggcgtttgtg
    21301 gaaagagcag cgttataccg acatcggcag cgcgttgcta aaacgtatcg cgcgggagga
    21361 agtggtgacg gtgcctgggc tgggttccat gttgttaccg ggcaaagtgg gttttgctga
    21421 ggataacagc tggcgtttta accccagcta cctgccgccg acgctggcgc agtatttcac
    21481 ccgctttggc gcgccgtgga ctacgctgcg cgaaaccaat caacgtttat tgctggaaac
    21541 cgccccgaaa ggcttttcgc cagactgggt gcgttatgag aaagacaaag gctggcagct
    21601 aaaagccgaa aaaacattga tcagcagcta cgacgccatc cgcgtttaca tgtgggtagg
    21661 catgatgcct gacagcgatc cgcagaaagc gcggatgctc aaccggttta aaccgatggc
    21721 gacattcact gagaaaaacg gttatccgcc ggaaaaagtg gatgtggcta cggggaaagc
    21781 gcagggtaaa ggaccagtcg gtttttctgc cgccatgctg ccctttttac aaaaccgcga
    21841 tgcgcaggcc gttcagcgtc agcgcgtggc cgataacttt cccggcagcg atgcctatta
    21901 caactatgtg ctgaccctgt ttggacaagg ctgggatcaa caccgtttcc gcttctcgac
    21961 aaaaggtgag ttattacctg actggggcca ggaatgcgca aattcacact aaacatattc
    22021 acgctttccc tcggtctggc cgtcatgccg atggtcgagg cagcaccaac cgctcagcaa
    22081 cagttgctgg agcaagttcg gttaggcgaa gcgacccatc gtgaagatct ggtgcaacag
    22141 tcgttatatc ggctggaact tattgatccg aataacccgg acgtcgttgc cgcccgtttc
    22201 cgttctttgt tacgttaggg cgatattgat ggcgcgcaaa aacagctcga tcggctgtcg
    22261 cagttagcgc cgagttcaaa tgcgtataaa tcgtcgcgga ctacgatgct actttccacg
    22321 ccggatggtc gtcaggcact gcaacaggca cgattgcagg cgacgaccgg tcatgcagaa
    22381 gaagctgtgg cgagttacaa caaactgttc aacggtgcgc cgccggaagg tgacattgct
    22441 gtcgagtact ggagtacggt ggcgaaaatt ccggctcgcc gtggcgaagc gattaatcag
    22501 ttaaaacgca tcaatgcgga tgcaccgggc aatacgggcc tgcaaaacaa tctggcgcta
    22561 ttgctgttta gtagcgatcg ccgtgacgaa ggttttgccg tcctggaaca gatggcaaaa
    22621 tcgaacgccg ggcgcgaagg ggcctctaaa atctggtacg ggcagattaa agacatgccc
    22681 gtcagtgatg ccagtgtgtc ggcgctgaaa aaatatctct cgatctttag tgatggcgat
    22741 agcgtggcgg ctgcgcaatc gcaactggca gaacagcaaa aacagctggc cgatcctgct
    22801 ttccgcgctc gtgcgcaagg tttagcggcg gtggactctg gtatggcggg taaagccatt
    22861 cccgaactac aacaggcggt gcgggcgaac ccgaaagaca gtgaagctct gggggcgctg
    22921 ggccaggcgt attctcagaa aggcgatcgc gccaatgcag tggcgaatct ggaaaaagcc
    22981 ctcgcactgg acccgcacag cagcaacaac gacaaatgga acagtctgct gaaagtaaac
    23041 cgctactggc tggcgatcca gcagggcgat gctgcgctga aagccaataa tcctgaccgg
    23101 gcagaacgcc tgttccagca ggcgcgtaat gtcgataaca ccgacagtta tgcagtgctg
    23161 gggctgggcg atgtggcgat ggcgcgaaaa gattatcccg ccgccgaacg ttattatcag
    23221 cagaccttgc gtatggacag cggcaacact aacgccgtgc gcgggctggc aaatatttac
    23281 cgccagcaat cgccagaaaa agctgaagcg tttatcgcct cgctctctgc cagtcagcgg
    23341 cgtagcattg atgatatcga acgcagcctg caaaacgacc gtctggcaca gcaggcagag
    23401 gcactggaaa accagggcaa atgggcgccg gcggcagcac ttcagcggca acgactggcg
    23461 ctggaccccg gcagcgtatg gattacttac cgactttcgc aggatctctg gcaggccgga
    23521 caacgcagcc aggccgatac gttaatgcgc aatctggcgc agcagaagtc gaacgacccg
    23581 gagcaggttt acgcttacgg gctgtacctc tctggtcatg accaggacag agcggcgctg
    23641 gcgcatatca acagcctgcc gcgcgcgcag tggaacagca atattcagga gctggttaat
    23701 cgactgcaaa gcgatcaggt gctggaaacc gctaatcgcc tgcgagaaag cggcaaagaa
    23761 gctgaagcgg aagcgatgct gcgtcagcaa ccaccttcca cgcgtattga cctcacgctg
    23821 gctgactggg cgcagcagcg acgtgattac accgccgccc gcgctgcata tcagaatgtc
    23881 ctgacgctgg agccaactaa cgccgatgcc attctggggc tgacggaagt ggatattgct
    23941 gccggtgaca cagcggcggc acgtagccag ctggcgaaac tgcccgctac cgataacgcc
    24001 tcgctgaaca cacagcggcg cgtggcgctg gcgcaggcgc agcttggaga taccgcagcg
    24061 gcgcagcaga cgtttaataa gttgatcccg caggcaaaat ctcagccacc gtcgatggaa
    24121 agcgcgatgg tgctgcgcga cggtgcgaag tttgaagcgc aggcgggcga tccaaagcag
    24181 gcgctggaaa cctacaaaga cgccatggtc gcatccggtg tgactacgac gcgtccgcag
    24241 gataacgaca cattcacccg actgacccgt aacgacgaga aagatgactg gctgaaacgc
    24301 ggcgtgcgca gcgatgcggc gggcctctat cgccagcagg atcttaacgt caccctcgag
    24361 cacgattact ggggttcgag cggcaccggt ggttactccg atctgaaagc gcacactacc
    24421 atgttgcagg tggatgcgcc gtattctgac gggcggatgt tctttcgcag tgatttcgtc
    24481 aatatgaacg tcggcagttt ctccactaat gccgatggca aatgggatga caactggggc
    24541 acctgtacat tacaggactg tagtggcaac cgcagccagt cggactccgg tgccagcgtg
    24601 gaggtcggct ggcgaaatga cgtctggagc tgggatatcg gtaccacgcc gatgggcttc
    24661 aacgtggtgg atgtggtcgg cggcatcagt tacagcgatg atatcgggcc gctgggttac
    24721 accgttaacg cccaccgtcg gcccatctcc agttctttgc tggcctttgg tgggcaaaaa
    24781 gactccccga gcaataccgg gaaaaaatgg ggtggcgtac gtgccgacgg tgtggggcta
    24841 agtctgagct acgataaagg tgaagcaaac ggcgtctggg catcgcttag tggcgaccag
    24901 ttaaccggta aaaatgtcga agataactgg cgcgtgcgct ggatgacggg ctattactat
    24961 aaggtcatta accagaacaa tcgccgcgtc acaatcggcc tgaacaacat gatctggcat
    25021 tacgacaaag atctgagtgg ctactcactc ggtcagggcg gttactacag tccgcaggaa
    25081 tacctgtcgt ttgctatacc ggtgatgtgg cgggagcgca cggaaaactg gtcgtgggag
    25141 ctgggggcgt ctggctcgtg gtcgcattca cgcaccaaaa ccatgccgcg ttatccgctg
    25201 atgaatctga tcccgaccga ctggcaggaa gaagctgcgc ggcaatccaa cgatggcggc
    25261 agcagtcagg gcttcggcta cacggcgcgg gcattacttg aacgacgtgt tacttccaac
    25321 tggtttgttg gcacggcaat tgatatccag caggcgaaag attacgcacc cagccatttc
    25381 ctgctctacg tacgttattc cgccgccgga tggcagggtg acatggattt accgccgcag
    25441 ccgctgatac cttacgccga ctggtaagtt ttcagatagc gcctctctta atgccgctgc
    25501 gatcgggtat actcgggcgg caatctggga tttccggggg gagacaattt gcgcgtaagt
    25561 cgctcgttaa caatcaagca gatggcaatg gtggcagccg ttgtcctggt gttcgttttt
    25621 attttttgca ccgttttgct gttccatctg gtccagcaga atcgctataa cacggctacg
    25681 caactggaaa gcattgctcg ctctgtacgc gaacccttat cttcagctat tttgaaaggc
    25741 gatattcccg aagcggaagc tattcttgcc agcattaaac cggcaggcgt ggtcagccgt
    25801 gccgatgtag tgctgcctaa ccagttccag gcgctgcgta aaagttttat tccagagcgc
    25861 ccggtgccgg taatggttac tcgcctgttt gagctaccgg ttcaaatctc gctgggcgtt
    25921 tactcgctcg aacgtccggc aaacccgcag ccaattgcct atctggtact acaggcggat
    25981 tccttccgta tgtataagtt cgtgatgagc accctctcaa cgttagtgac catttactta
    26041 cttttgtcgc ttatcctgac cgtcgccatc agctggtgca ttaaccgcct gattttgcat
    26101 ccgttacgca atattgctcg cgaacttaac gccatcccag cccaggagct tgttggtcac
    26161 caactggcat taccgcgtct gcatcaggac gatgaaatcg gtatgttggt gcgcagttac
    26221 aacctcaacc agcaattgct gcagcgccat tatgaagaac agaacgaaaa tgcgatgcgc
    26281 ttcccggtgt cggatttgcc gaacaaagcc ttgctgatgg agatgctgga gcaggttgtc
    26341 gcgcgtaaac aaaccaccgc gctgatgatc atcacctgtg aaaccctgcg tgatactgcg
    26401 ggcgtgctga aagaggcgca acgagaaatt ctgctgctga cgctggtgga aaaactcaaa
    26461 tcggtactgt cgccacgtat gatcctcgcg cagattagcg gttatgactt tgctgtcatt
    26521 gccaacggtg tacaggaacc gtggcacgca atcaccttag gtcagcaagt gctcactatc
    26581 atgagcgagc gcctgccgat tgaacgtatt caactccgtc cgcactgtag cattggcgtg
    26641 gcgatgttct acggcgatct caccgccgaa cagctttaca gtcgcgctat ttctgcggca
    26701 tttaccgctc gccataaagg caagaatcag attcagttct ttgatccgca gcagatggaa
    26761 gccgcccaga agcggttgac ggaagagagc gatatcctta atgcactgga aaatcatcag
    26821 tttgctattt ggttacagcc acaggtcgag atgaccagcg gtaaactggt cagtgcggaa
    26881 gtgttactgc gtatccagca accggatggc agttgggacc tgccggatgg cttaatcgat
    26941 cgcattgagt gctgtgggct gatggttacc gtcggtcact gggtgctgga agagtcctgt
    27001 cgattgcttg cagcctggca agagcgcggc attatgctgc ccttgtcggt aaacctctct
    27061 gcgctgcaac tgatgcaccc aaatatggtg gcggatatgc tggaactgtt aacccgctat
    27121 cgcattcaac cgggaacact gattctggaa gtgacagaaa gccgacgtat tgacgaccct
    27181 catgctgcgg tggcaatcct ccgtccgctg cgcaatgccg gagttcgggt ggcgctggat
    27241 gatttcggca tgggctacgc agggctgcgt cagctgcagc atatgaaatc gttgccaatc
    27301 gacgtactga aaatcgacaa aatgtttgtt gaaggcttgc cggaagatag cagcatgatt
    27361 gctgcaatta tcatgctggc gcagagcctg aacttacaaa tgattgccga aggcgtggag
    27421 actgaagcac aacgcgactg gctggcaaaa gcgggcgttg gtattgccca gggcttcctt
    27481 tttgctcgcc cactccctat taaaatcttc gaagagagtt acctggaaga aaagtagcta
    27541 ccccaaactg attacaaaac tttaaaaagt gctggtttgt gcgagccagc tcaaactttt
    27601 taaccttttt gtttcaatta tgatccaggt acatttctgt gatgttgtct gggtgttatt
    27661 ttaaggccgc aggtacctca taaccttaca agacctgtag ttttactaaa ggacacccta
    27721 tgaaaacctc tctgtttaaa agcctttact ttcaggtcct gacagcgata gccattggta
    27781 ttctccttgg ccatttctat cctgaaatag gcgagcaaat gaaaccgctt ggcgacggct
    27841 tcgttaagct cattaagatg atcatcgctc ctgtcatctt ttgtaccgtc gtaacgggca
    27901 ttgcgggcat ggaaagcatg aaggcggtcg gtcgtaccgg cgcagtcgca ctgctttact
    27961 ttgaaattgt cagtaccatc gcgctgatta ttggtcttat catcgttaac gtcgtgcagc
    28021 ctggtgccgg aatgaacgtc gatccggcaa cgcttgatgc gaaagcggta gcggtttacg
    28081 ccgatcaggc gaaagaccag ggcattgtcg ccttcattat ggatgtcatc ccggcgagcg
    28141 tcattggcgc atttgccagc ggtaacattc tgcaggtgct gctgtttgcc gtactgtttg
    28201 gttttgcgct ccaccgtctg ggcagcaaag gccaactgat ttttaacgtg atcgaaagtt
    28261 tctcgcaggt catcttcggc atcatcaata tgatcatgcg tctggcacct attggtgcgt
    28321 tcggggcaat ggcgtttacc atcggtaaat acggcgtcgg cacactggtg caactggggc
    28381 agctgattat ctgtttctat attacctgta tcctgtttgt ggtgctggta ttgggttcaa
    28441 tcgctaaagc gactggtttc agtatcttca aatttatccg ctacatccgt gaagaactgc
    28501 tgattgtact ggggacttca tcttccgagt cggcgctgcc gcgtatgctc gacaagatgg
    28561 agaaactcgg ctgccgcaaa tcggtggtgg ggctggtcat cccgacaggc tactcgttta
    28621 accttgatgg cacatcgata tacctgacaa tggcggcggt gtttatcgcc caggccacta
    28681 acagtcagat ggatatcgtc caccaaatca cgctgttaat cgtgttgctg ctttcttcta
    28741 aaggggcggc aggggtaacg ggtagtggct ttatcgtgct ggcggcgacg ctctctgcgg
    28801 tgggccattt gccggtagcg ggtctggcgc tgatcctcgg tatcgaccgc tttatgtcag
    28861 aagctcgtgc gctgactaac ctggtcggta acggcgtagc gaccattgtc gttgctaagt
    28921 gggtgaaaga actggaccac aaaaaactgg acgatgtgct gaataatcgt gcgccggatg
    28981 gcaaaacgca cgaattatcc tcttaatctc accacttatg cccgcactcc cttccccgag
    29041 tgcgggtgtt tgcgcataat tgacccctgt gcctgaactt accacctggg tgagttcagg
    29101 tttatttcac ttcttccgtg acattttcat gttcttgcgg tctaacacga agtgttttta
    29161 acgtcattta gactgactga caacgggcag ttttttatta ccaggatagt tgatcagggg
    29221 ttcacatgca gggcacaaaa attcgacttt tagcgggcgg tttgctgatg atggccactg
    29281 ctggctatgt gcaggcagat gcgctccagc ctgatccagc atggcaacag gggacgcttt
    29341 ccaacggttt acagtggcaa gtgctgacca ccccccagcg tcccagcgat cgtgttgaaa
    29401 ttcgcctgct ggttaatacc ggttcgctcg ccgaaagtac acaacagagc ggttacagtc
    29461 acgccatccc tcgtattgcg ctaacgcaaa gcggtggcct tgacgcagca caggcgcgtt
    29521 cattgtggca gcaggggatc gaccctaaac gcccgatgcc gccggtaatt gtctcttatg
    29581 acaccacgct gtttaatctg agtttgccca ataaccgtaa cgatttgctg aaagaagcgc
    29641 tctcttatct ggcaaatgcc actggcaaat tgaccatcac accagaaacc atcaaccacg
    29701 cgctgcaaag tcaggacatg gtggcaacct ggcctgccga tactaaagag ggctggtggc
    29761 gctatcgtct gaaagggtca accttgttag gtcacgatcc tgccgatccg ctgaaacaac
    29821 ccgttgaagc ggaaaaaatt aaagatttct atcagaaatg gtacaccccg gatgcaatga
    29881 cgctactggt ggtgggaaac gtggatgcgc gctcggttgt cgaccaaatc aacaaaacgt
    29941 ttggcgaact gaaaggcaaa cgtgaaacgc cagctccggt gccgacgctt tctccgctgc
    30001 gtgcggaagc ggtgagtatt atgactgacg cggtgcgtca ggaccggtta tctatcatgt
    30061 gggatacgcc gtggcagccg attcgtgaat cagccgcact gctgcgctac tggcgtgcgg
    30121 acctggcccg cgaggcgctg ttctggcatg ttcagcaagc gttaagcgcc agtaacagca
    30181 aagacatcgg tcttggattt gactgccgtg tgctgtatct gcgtgcgcag tgtgccatca
    30241 acatcgaatc accaaacgac aagctgaaca gcaaccttaa tctggtggcg cgtgaactgg
    30301 cgaaggttcg cgataaaggt ctgccggaag aagagttcaa tgcgttagtg gcgcaaaaga
    30361 aactggagct gcagaaactg tttgccgcct atgcgcgggc tgataccgat attctgatgg
    30421 gtcagcggat gcgttcgttg caaaatcagg tcgtcgatat cgcgccggag cagtatcaga
    30481 aactgcggca ggatttcctt aacagcctga cggtggagat gttaaatcag gatctgcgtc
    30541 agcagttgtc gaatgatatg gcgttaatac tgctgcagcc gaaaggcgag ccggaattta
    30601 acatgaaagc gttgcaggcg gcctgggatc aaatcatggc cccatcgact gctgctgtcg
    30661 ccacggatga cgtacatcct gaagtgacgg atattccacc tgcacagtaa tgcctgatgg
    30721 tgatgagtta gcacaaccat caggtattta tggatgagct ggatagaggg gtaacacttt
    30781 atccagcctt ttgcatatgc tgcgtttacg ctggcatcgc ctcacgcggg ataatcgcgc
    30841 cgcgatactg aataacggta cttgcggtca ggtgcccgcg tttcgccgcg ttttccgcac
    30901 tgccgcccgt caaacgtacc gccagataac cggcgctgaa agagtcgcca gctgcggtgg
    30961 tatcgatcac tttttctttc ggcagtttca ccgccggaac atccactaac ccttcgccag
    31021 caatggacac caggcaagaa tccgccccgc gtttcaccac cacttctttc acgcccgcgt
    31081 tatgggtgcg cgcaatgacg tcttccaccg gctgttgacc ccacagcgcg tcttcatcgt
    31141 ccagcgtcag gaaggcgata tccgtgcatt ccagcatttg ttggtacacc tgctgtgtct
    31201 cttctttgct ggcccacagg cgcggacgat agttattgtc gaaaatcact tttccgccgt
    31261 tggcgcggca ttcgcgcagc agggaaagca gcttttcgcg gctggtcggg cttaagatcg
    31321 ccaggctaat cccgctcagg tagagataat cgaaattcgc cagctcttcg caaatcgccg
    31381 tagactgctc actctccagc cagaatttgg cggcggcttc gttccgccag tagtagaacg
    31441 tacgctcgcc ggtgctgtcg gtttcaatgt agtaaaggcc cggcagacgg ttttccatcc
    31501 gttgggtcag ggaaatatca acgttctcgc cgtgccaggc gtccagcatc tgctggctaa
    31561 aactgtccgt tcccagcgcc gttacgtaat gaacggttaa tgccgcagga tcgacctgac
    31621 gggcgatata gacggaagtg ttcagggtat cgccgccgaa accgcgctta acgtccgcgc
    31681 ctttctcgga aagctcaatc atgcattcgc caatcacggc aatctttttg gacatagtcg
    31741 tgaacctgat ctgtaaaaaa ttagcgttag tttgcgctgt ggtggtttgc tggtcaacaa
    31801 tattaaaaca gtgttccatt atttttttga gccagaacgt attcctgaaa gattccgttg
    31861 tggagtgagg aaatttaccc cggccaggcg gtaaagttct gcccttacgc gccgataatc
    31921 tttgtcgagt ccgggtagca tcacttttaa acacaggaca tctttgatga taaggcaggt
    31981 tatccagcga ataagcaacc ctgaagcaag catcgagagc ttgcaggaac ggcgtttttg
    32041 gttgcagtgt gagcgtgctt acacctggca gccgatctat caaacatgcg ggcggttaat
    32101 ggccgtggag ctattaacgg tggtcacgca tcccttgaac ccttcgcaac gcctgccgcc
    32161 ggatcgctat tttactgaaa tcaccgtcag ccatcggatg gaggttgtga aagagcagat
    32221 tgatttgctg gcgcaaaaag ccgacttctt tatagagcac ggcctgctgg catcggtcaa
    32281 tattgatggc cctacgctca tcgccctgcg tcagcaacca aaaatcctgc gccaaattga
    32341 gcgtcttccc tggctgcgtt tcgaactggt ggagcatatc cgtctgccga aagattcaac
    32401 ctttgcctcg atgtgtgaat ttggcccgct gtggctgggt gattttggta ccgggatggc
    32461 aaatttctct gcactaagtg aagtgcgtta tgactacatc aaaatcgcgc gagaactgtt
    32521 tgtgatgctg cgtcagtcgc cggaaggacg cacactcttt tctcagcttt tacatctaat
    32581 gaatcgctat tgtcgcgggg tgattgttga gggcgtagaa acgccggaag agtggcgtga
    32641 tgtacagaac tcgcccgcat tcgccgcaca aggctggttt ctttcacgcc cggcaccgat
    32701 agaaacgctg aatacggcgg ttctggcgct ataagctgcc tcattttccg cctggctgga
    32761 ctatctttag gactggcaca ggaagaatat gaggaagcga acgatgagca aggcaggcaa
    32821 aataactgct gcgatttcag gggctttctt gttgttgatt gtcgtggcga tcattttgat
    32881 tgcaactttt gactggaatc gactcaaacc gaccatcaac cagaaagtct ctgcggagtt
    32941 gaatcgtccg ttcgctatcc gtggcgatct gggcgtggtg tgggagcggc aaaaacaaga
    33001 aactggctgg cgcagctggg tgccgtggcc tcatgtacat gcagaagaca tcattcttgg
    33061 caatccaccg gatattcccg aagtcacgat ggtgcatttg ccgcgagtag aggcaacgct
    33121 ggcaccgctg gcgctgctga ccaaaacggt ctggctgccg tggatcaagc tcgaaaagcc
    33181 cgacgcgcgc ctgattcgcc tctccgaaaa gaacaataac tggacgttta atctcgccaa
    33241 cgatgataac aaagacgcga atgcaaagcc gtcggcatgg tcgtttcggc tggataatat
    33301 tcttttcgat caagggcgga tcgccattga tgacaaagta agcaaagcgg atctggaaat
    33361 ttttgttgat ccgttaggca agccgctgcc gttcagcgaa gttactggat cgaaaggtaa
    33421 agcggataaa gaaaaggtgg gcgattacgt ttttggcctg aaggcgcagg gacgttataa
    33481 cggtgaaccg ctcacgggta cgggaaaaat aggcggtatg ctggcgctgc gtggcgaagg
    33541 gacgccgttt ccggtacagg ctgatttccg ttcaggtaat acccgtgttg cttttgatgg
    33601 cgtcgtgaat gacccaatga agatgggcgg tgtcgattta cggcttaaat tttctggcga
    33661 ttcactgggt gatctctatg aactgacggg cgttctgctg cccgataccc cgccgtttga
    33721 aacggatggt cggctggtag cgaaaatcga cactgaaaaa tcgtcggtct ttgattatcg
    33781 cggttttaat gggcgaattg gcgatagcga tatccacggt tctctggtct acaccaccgg
    33841 aaagccgcga ccaaaactgg aaggtgatgt cgagtcgcgg caattgcggc tggcggacct
    33901 gggaccgttg attggcgttg attcggggaa aggggcagaa aagtcgaaac ggtctgaaca
    33961 gaagaagggc gaaaaaagcg ttcagcctgc gggcaaagtg ctgccttatg accgcttcga
    34021 aaccgataaa tgggacgtta tggatgccga tgttcgcttc aaaggccgac gtatcgagca
    34081 tggcagtagc ctgccgatta gcgatctttc tactcatatc atcctcaaaa atgctgacct
    34141 gcgcctgcaa ccgctgaaat ttggcatggc gggcggcagc attgcggcga atatccatct
    34201 ggaaggcgat aaaaagccga tgcaggggcg ggcagatatt caggctcgtc gactgaaact
    34261 gaaagaactg atgcccgatg tggaactgat gcagaagacg ctgggggaaa tgaacggtga
    34321 cgcggaacta cgcggtagcg gtaactcggt ggcggcgctt ttaggcaaca gtaacggcaa
    34381 cctgaaactg ttgatgaatg acgggctggt gagccgcaac ctgatggaga ttgttgggct
    34441 gaatgtcggc aactacattg tcggtgcgat atttggtgac gatgaggtgc gggtgaactg
    34501 cgcggcggcg aatctgaata ttgccaacgg cgtagcgcgc ccgcagattt ttgctttcga
    34561 tactgagaac gcgttgatta atgttaccgg cacggcaagt tttgcttcgg aacagctgga
    34621 tttgactatt gatccggaga gtaaagggat tcggattatc acactgcgtt cgccgctgta
    34681 tgtgcgtggg acgtttaaaa atccgcaggc tggggtgaaa gccggaccgc tgattgcccg
    34741 tggtgccgtt gcggcggcac tggcaacgct ggtaacaccg gcggcggcgt tattggcact
    34801 gatctcacct tccgaagggg aggctaatca gtgtcggacg atattgtcgc agatgaagaa
    34861 gtgatgaggt tggattgtgt ttgctggtga gttcgggagc agcgtgttcc cctcacccta
    34921 atcctctccc caaaggggcg aggagactgt tttgtgcgtg ttgaaacaac gagtaccgct
    34981 tttccgttca ctttctgggg gagggctgtt atgttcgcga tataacatct cgctccgctt
    35041 ttctccctct ccctttcagg gagagggctg gggtgagggt ggctgcccac acgatactta
    35101 caacgactga tgttgcgtct catgggtcag cagcagggcg attaacgtca agccagccat
    35161 cgccgccaga tataacccca ccgcacctaa cccgtagtta gtctgcaacc aggctgcgat
    35221 atacggcgca acggaagccc cgagaatcga cgatacgttg taagagaacg atgctccggt
    35281 gtaacgcact tctgtcggga acagctctgg taacagcgcg cccatcggac cgaaggtcag
    35341 ccccatcaga cttaacccca gcagcaggaa ggcaaaaacc agaatcgggt tgccagaacc
    35401 gagcaaaggg ttaaaggcga atagcgcgaa caggatgagc agcgtggtga tgattaccat
    35461 gcttttacgg cgaccaaagg catcagccag taatccagcg actggcacca tcacgccaaa
    35521 accaataact gccatcatca acatccacaa cacttcgtta cgcggcaggc caagcccaac
    35581 tggcgcggcg gcggtactaa aggtcatgga gtagaccgtc atgatgtaaa acagcgtata
    35641 ggttgccagc ataatgaacg tacccagtac ggttacgcga acatgtttgg tcagcagcgt
    35701 acccagcggg atcttcacct gttttttcgc tttagcgact ttctcaaaca ccggcgactc
    35761 atgcagcgac acgcgaacat acaggccgat aatgaccagc accgccgaga agataaatgg
    35821 cacacgccag ccccagctca taaactgctc gtcggtcagt agccaggaaa gcagcaagaa
    35881 agtgccgttg gcaaagaaga agccaatcgg tgcgcccagc tgcgggaagg agccgtacaa
    35941 tgcacgtttg cgcggtgggg cgttttcagt cgccagcagc gccgcgccgc cccattcacc
    36001 acctaagccc agaccctgac caaatcgagc cagcgccagc agcagcgggg cgaaaatacc
    36061 aatcgtggca tagcctggca gcagaccaat caccacggtc gaaatcccca tcgttagcaa
    36121 cgaggcgacc agcgtcgctt tacgcccaac gcgatcgcca aaatgaccaa aaacggcaga
    36181 gccaatgggg cgcgcgacga aggcgatggc gaaggtggcg agcgactgta gcgttgctgc
    36241 cgtaggatcg ccctgcggga agaagatatg cggaaacaca ataacggccg cagtggcgta
    36301 aatgtaaaag tcgaagaact caatggctgt gccaatgaga gaggcgacaa ggactttatt
    36361 acgcgagttg atcggcgtgt attcttgctc gtggtcgagt gttgtggctg ttgcttgcat
    36421 aatcttttct tattttttgg ctaacgaata gccatattac gcacagcaaa agcgatattt
    36481 caatgtgtaa caaatcgcgg aaatggtcaa aaaccaggca aaaaggggat aatgtttagg
    36541 ccagtgattt ttcttctatg aaatgcttca cataatttta taaatagtgg ataaaactgg
    36601 tttcaggtta aataaaagtt accaactgga tttatatgct ggggttatga gttagaatga
    36661 aattgtttgc tcccaaatag atggctgaag aggctctggg gacgagtttc aagaggttat
    36721 gtgcgcatta tagccggatg cgatgctggc gcatcttatc cggcctacgg ggagccaggc
    36781 cgaataaaat cgtatgccgg ataaggcgtt tacgccgcat ccggcctatt ttaaggctgc
    36841 gttttccctg gcattcgcgg gtcgtcttta tattcggcgg tggcaatcca cgccgcgcaa
    36901 aacagcgtca aacgggcgaa gaagtagaaa aatgccatca gccccagcac ggaaccaaat
    36961 gctgcgccag agggggattt catcagcgat ggcagggtgt aggtcatcac gattttaatc
    37021 acttcaaaac caatagcagc cagaaatgtt ccgcgaatca gggctttttt gcgcggacgg
    37081 tggcgcggca accgccagaa gatccagaag aaaagcagat agttggcgaa gatggaaatc
    37141 gccaggccaa tcaatcgcca cgtcggtttc agccactcaa tgctgttcag gtgcagggcg
    37201 ctaataatca tttgctgcgc cgaaccggca accgaggtga tcgaaagcgt cacaatcagc
    37261 gcaatcaaca aaccaatcag tgaaataaaa tcacgcagat attttaccca gaacttctcc
    37321 tgatcttgcg gcgagcgttc ccagacatca cgcgactggg cacgaatcgc ttcacgcagg
    37381 ttacccatcc agttgatgcc ggaataaagt gccaccgcca ggccgacaag ccctacagtc
    37441 gtacgctgct gaacggcggt gttgatggtg tttttcaacg tggcggctag tgtcggatcg
    37501 ctgatgtttt gcagaatttt gtcgaagata tcctgtagca acatcggatg ggaggccagc
    37561 acaaagcccc ctgcggcaaa cgacaccatc aaaatcggga tcatcgacaa aaatgagaaa
    37621 taggtgatag ccgcaccaaa ctggttaccc agccgatcgt taaagcgttc tgtcgcgcga
    37681 atcaggtgcg caataaccgg ttggcgttgg actttttcgg cagtggtggt gacggtttcc
    37741 agcgcctggc taactttgcc gcctttctcg ctattatcca actgcttaat cggctcgtgc
    37801 tccagatcct gggtgggacg tttgatctcg ttttcctgcg tcatccgctc ttttgtcctt
    37861 ctgtcgtggt cattcttaaa aagtatagtc ggtcagtcca ggtgctcttt cattacgcca
    37921 gccagccact gcataaacag gtttacacgc cgggaaagct cccgacgctg cgggtaaacc
    37981 agcgaaaggg agagcggctc ggcacggtag ccaggtaata cttcaataag ccgcccggca
    38041 cgcagggctt cgcgcacggc aatgcgcggg atctgaataa tccccagacc ggcaagaccg
    38101 gcggcgagat agttttcgct actatttacc gtcaacatgc cgccagactt aaaccactgg
    38161 acgccattaa cgctggcaac ctcaaaacct aacggatgta cacccaggtg cggtgtataa
    38221 cgcactattg cgtgtgaagt cagatcatcg gggctttgcg gataaccaaa gcgcgtcaga
    38281 tagtgcggac tggcacagtt gaccatggtc agtttgccga ggggacgggc gataacgcca
    38341 tcttccggta acgcgccagt gcgtatcacg caatcaaaac catcatgaag aatatctacc
    38401 ggacggtcat ggctactcag ttccagctca attcccggat gcagatagag aaattccgac
    38461 aggcgcggca gtaacaggtt tttcgcgatt cctggcggga tgtcgatgcg taatttaccg
    38521 ctgatactgg tggcatcctg ttgaaacaga ccgtccagtt cgttgagatt actcaacaca
    38581 tcttttgccc gttgataata ggtcatgcct tctggcgtga gtttgacccg tcgcgtggtg
    38641 cgctggagaa gctgggtgcc aagttgatgt tccagtgcct gtatctggcg cgaaacactt
    38701 ccctttggca aagcaaagaa atccgctgcg cgggaaaaac tttccagctc cgcgactttg
    38761 atgaacaact gcattgcgtg aattttatcc atttctttga ccgattgttg ttcacagcga
    38821 aacagtaacg cgcatatcgc attgtttatt gttttttcta acatctaatg ccgggtttca
    38881 caatgttgtc atgacgaatg tggcgatttc tcagcaggaa aagggcggaa tagctttatg
    38941 agaaaggtga atccccttaa acagagcgta tttttcagtg attcccttta aagtgaatag
    39001 aggacgtatt ggctatttgt gcttattttt gtctcattgc catttgttat tttggcttgt
    39061 agtcgcggaa tttcattttt aattgcatgc gtactaacca ccaatataag gaaatcctca
    39121 aaattgtttt aaatagtgcc ctcgacatgt aatttcaggc gtttagctgt aactatttat
    39181 atcggtaact attttctacg cgtcatctct gtagaatggc caccgccaaa tggcgaattc
    39241 ttattttttc tcgcgggtaa tacccttcca ctacttaagt ctttttaaca tattcaggtg
    39301 gagattcagt tatgcaaata gtcatgtttg acaggcagtc aatatttatt catggaatga
    39361 aaatcagttt acagcagcgt attccagggg tgagtattca gggggccagt caggcagacg
    39421 agttatggca aaagctggaa agttaccctg aagccttagt tatgctcgat ggcgatcagg
    39481 atggtgagtt ttgctactgg ttgctgcaaa aaaccgtggt gcagtttcct gaggttaagg
    39541 tgttaatcac ggcgacggat tgcaataaac ggtggttaca ggaagttatc cattttaatg
    39601 tgctggccat tgtgcctcgt gattcaaccg tcgagacatt tgcgttggcg gtaaatagtg
    39661 cggcgatggg gatgatgttt ctgcctggag actggcggac gacgccggaa aaggacatta
    39721 aagatctcaa atcgttaagc gcccgccagc gggagatttt aaccatgtta gcggcgggcg
    39781 agtcaaataa ggagatcggc agagcgctga atatcagtac cggaacggta aaagcgcatc
    39841 tggaatccct gtatcgccgt ctggaagtga aaaatcgcac ccaggcggca atgatgttaa
    39901 atatctcctc ctgaagagga taattttaca gccagcagga agttagcggc tggctgtaaa
    39961 aatattatgg ttcgccgtac aaaccaatta aacggcgtac cacaccgtta gtccagccaa
    40021 acccatcctg caacggatac tcgccaccgc cgccttcgcg tggaacacca tcggcaatat
    40081 ggtatttttc gatcagtttg tgctgttcca gatagaactg attcaccgtc ttcagccagc
    40141 ttcgcgcgat ttcatcaccc agaaggtcat cgccgtacat tttaaatccc tgaatcgcca
    40201 tccattgtaa cggtgcccag ccgttgggtt tatcccactg ttcaccggtt tcgtactcgc
    40261 ttgccagaat cccgccaggt gtcagtaacc gactgcgcac ggcatttgcc agacgatcgg
    40321 cctgttcatg gttcgccata ccgacataga gtggcacaat ggcggcagcg gaaaacagcg
    40381 ccagttgttc gcgtcgccag tcgtaatcgc ggtagatgcc gttttcatca tcccagaggt
    40441 aacgctttac cgcatcgcga cgggcactgg ccttctggcg gaacagtgct tctgtctctt
    40501 tctcgccttt cagcgccgag atgttggcga tggcgctctc cagtttaaac aggaaggcat
    40561 tcagatcgat ggggatgaac tgggtggtac gaatactcgc cagacgacca gtatcacgca
    40621 gccaacggga agagtaatcc caaccggagg ccgcccccgc tcgtaaatcg cggtacacct
    40681 cgttgggcgg gcgaccagaa tgtttcgcgg tttcaacgtc ctcaagccag gattcgtcac
    40741 gcggcgtgtc gcgatcgtcc cagtaacggt tgagcagcga tccgtccggc atccgcacaa
    40801 catggcgata ggcctgatta gggatcaacg attctgcacc gtccatccag aaggcatatt
    40861 ccattttcag gtggtcgaga tagcggcgcg caccgcgtac accatcttct tcaaacaact
    40921 ccaccatcag cgcaaaaacc ggtggttgcg agcggctcaa ataataggtg cggttgccgt
    40981 tggggatgtg accgtagttt tcgatcatcc aggcgaagtt atcggccatg catttcagca
    41041 aatcttcccg accactttcc gccagcccca gcatggtgaa ataggaatcc caatagtagg
    41101 tttcgctaaa acggccgccc gggacaatat atgactgcgg tagcgccagc agagaagacc
    41161 acggaatgtg atcctgtggt tcgcgggtta gcaccggcca cagctggtcg atatgctctt
    41221 tcagggaatt ttgcgggtcc gatacatact cgctggagta gacctccggc agccagaagt
    41281 gattttcaac aaacttgcgc aagtcaaaat cacgatgacg gcgcacttta cggtagcgga
    41341 ttaaaatatc cagcgggtcc attttgggtg cgcagtcggg aaaggtttta ctgtcgggga
    41401 aaattttcgc cgactgaaca tgctcgaaca gttcgagata gcgatcggca ggcgtcagcg
    41461 catcagaggc gggcagccct tcaatcatct cgggttccgg ttctgcctcg atcatctcat
    41521 ccagttttaa ttcatacggg tccagttcat agcagagatc gacttcgatc atcagttcgt
    41581 ctggattagg gttttgaatt ttctgattga gcataaggat ccaacctccg aaattcgtcg
    41641 ctaattatcg gcttttcttt aagggtagtc attcgctccg cctggtgggc gacaaagcgt
    41701 gcggtggatc acgtttatta acttgtcaaa aaatataacg cactaatatc aatggaattt
    41761 ataaaaatac ggatttggtg ttgtttttca ttttcagaac attcaatcct gctctcgccg
    41821 caatcatgat atgccattcc tgatctgggt aataggcaca ggctatctta ttgatagttt
    41881 atattcatgt aattgattga ttcctatcaa aaagcgtatc tccctgtttt ttatgatggc
    41941 tttgtctcgc agagacgttt gcagcattct ggaaaatttt ctgggtcaca ataactcacc
    42001 accgtgaggg aagaataatg aaaatggtct cacgtattac cgcgatcggc ctggctggcg
    42061 tcgcgatttg ctatttaggg ttatctggtt atgtgtggta ccacgataat aaacgcagta
    42121 aacaggccga tgttcaggca tctgctgtca gtgaaaataa taaggtttta ggctttctcc
    42181 gcgaaaaagg atgcgactat tgccacacgc cttcggcaga attacccgcc tattattata
    42241 ttcctggcgc gaaacagttg atggattacg acattaagct tggatataaa tcttttaacc
    42301 tcgaggccgt gcgtgcggca ctgctggctg ataaacccgt ttcgcaaagc gatctgaata
    42361 agattgaatg ggtgatgcag tatgaaacta tgccaccaac gcgttatacc gcgctacact
    42421 gggcgggtaa ggtgagtgat gaagagcggg cggaaatact ggcctggatt gcaaaacagc
    42481 gcgcggaata ttacgccagc aatgatactg ctccggagca tcgcaatgaa ccggtgcagc
    42541 ccatcccgca aaaactgcct accgatgcgc aaaaagtggc gttgggcttt gcgctgtatc
    42601 acgatccccg tttatcggct gatagcacca tttcatgcgc tcattgccat gcgttgaatg
    42661 cggggggcgt cgatggcaga aaaacatcga ttggtgttgg tggcgcagtt gggccgatta
    42721 acgcgccgac ggtatttaac tcagtattta acgttgagca gttctgggat ggtcgtgcgg
    42781 caacattgca ggatcaggca ggtggaccgc cgttgaaccc gattgaaatg gcgtcgaaat
    42841 cctgggacga aattattgct aagctggaaa aagatccgca gcttaaagcg cagttcctcg
    42901 aagtttatcc gcaaggtttc agtggcgaaa atattactga tgccattgct gaatttgaga
    42961 aaacattaat tacgccggat tccccatttg ataaatggtt gcgtggagat gaaaatgcgc
    43021 tgacggcgca acagaaaaaa ggctatcaat tatttaaaga taataaatgt gcaacttgtc
    43081 atggtggtat tattctcggc ggacgttcct ttgaaccgtt ggggctgaaa aaagacttta
    43141 actttgggga aattacggcg gcggatattg gtcgtatgaa tgtgactaaa gaagagcgtg
    43201 ataaattgcg ccagaaagta cccggtttac gtaacgttgc tttaacggca ccgtacttcc
    43261 atcgcggtga cgtgccgacg ctggacgggg cggtgaaact gatgctgcgc tatcaggtag
    43321 gcaaagagct gccgcaggag gatgtggatg atatcgtagc tttcctgcac agtctgaacg
    43381 gggtgtacac gccgtatatg caggataaac aataactaat ttgatcgccc gaacaggaat
    43441 gtttgggcga tttttattac gataataaag tctgttttta atattatcat gttaaatgtt
    43501 tatattataa aaagtcgttt ttctgcttag gattttgtta tttaaattaa gcctgtaatg
    43561 ccttgcttcc attgcggata aatcctactt ttttattgcc ttcaaataaa tttaaggagt
    43621 tcgaaatgga ccagaagctg ttaacggatt tccgctcaga actactcgat tcacgttttg
    43681 gcgcaaaggc catttctact atcgcggagt caaaacgatt tccgctgcac gaaatgcgcg
    43741 atgatgtcgc atttcagatt atcaatgatg aattatatct tgatggcaac gctcgtcaga
    43801 acctggccac tttctgccag acctgggacg acgaaaacgt ccataaattg atggatttgt
    43861 cgatcaa
//
LOCUS       DAJVSY010000009        43398 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.009, whole genome shotgun sequence.
ACCESSION   DAJVSY010000009 DAJVSY010000000
VERSION     DAJVSY010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 43398)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 43398)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..43398
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.009"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            164..421
                     /locus_tag="OQQ19_000495"
                     /pseudo
     CDS             164..421
                     /locus_tag="OQQ19_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311868.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase"
     gene            complement(471..1727)
                     /gene="nupG"
                     /locus_tag="OQQ19_000496"
     CDS             complement(471..1727)
                     /gene="nupG"
                     /locus_tag="OQQ19_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311867.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease NupG"
                     /protein_id="HCS1802241.1"
                     /translation="MNLKLQLKILSFLQFCLWGSWLTTLGSYMFVTLKFDGASIGAVY
                     SSLGIAAVFMPALLGIVADKWLSAKWVYAICHTIGAITLFMAAQVTTPEAMFLVILIN
                     SFAYMSTLGLINTISYYRLQNAGMDIVTDFPPIRIWGTIGFIMAMWVVSLSGFELSHM
                     QLYIGAALSAILVLFTLTLPHIPVAKQQANQSWTTLLGLDAFALFKNKRMAIFFIFSM
                     LLGAELQITNMFGNTFLHSFDKDPMFASSFIVQHASIIMSISQISETLFILTIPFFLS
                     RYGIKNVMMISIVAWILRFALFAYGDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVE
                     KEVSPAIRASAQGMFLMMTNGFGCILGGIVSGKVVEMYTQNGITDWQTVWLIFAGYSV
                     VLAFAFMAMFKYKHVRVPTGTQTVSH"
     gene            complement(1929..3008)
                     /gene="mltC"
                     /locus_tag="OQQ19_000497"
     CDS             complement(1929..3008)
                     /gene="mltC"
                     /locus_tag="OQQ19_000497"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417438.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltC"
                     /protein_id="HCS1802242.1"
                     /translation="MKKYLALALIAPLLISCSTTKKGDTYNEAWVKDTNGFDILMGQF
                     AHNIENIWGFKEVVIAGPKDYVKYTDQYQTRSHINFDDGTITIETIAGTEPAAHLRRA
                     IIKTLLMGDDPSSVDLYSDVDDITISKEPFLYGQVVDNTGQPIRWEGRASNFADYLLK
                     NRLQSRSNGLRIIYSVTINMVPNHLDKRAHKYLGMVRQASRKYGVDESLILAIMQTES
                     SFNPYAVSRSDALGLMQVVQHTAGKDVFRSQGKSGTPSRSFLFDPASNIDTGTAYLAM
                     LNNVYLGGIDNPTSRRYAVITAYNGGAGSVLRVFSNDKIQAANIINTMTPGDVYQTLT
                     TRHPSAESRRYLYKVNTAQKSYRRR"
     gene            complement(3073..3348)
                     /locus_tag="OQQ19_000498"
     CDS             complement(3073..3348)
                     /locus_tag="OQQ19_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HCS1802243.1"
                     /translation="MSRTIFCTFLQREAEGQDFQLYPGELGKRIYNEISKEAWAQWQH
                     KQTMLINEKKLNMMNAEHRKLLEQEMVNFLFEGKEVHIEGYTPEDKK"
     gene            complement(3376..4428)
                     /gene="mutY"
                     /locus_tag="OQQ19_000499"
     CDS             complement(3376..4428)
                     /gene="mutY"
                     /locus_tag="OQQ19_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HCS1802244.1"
                     /translation="MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQ
                     VATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGG
                     KFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEV
                     ENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWSL
                     YPGKKPKQTLPERTGYFLLLQHEDEVLLAQRPPSGLWGGLYCFPQFADEESLRQWLAQ
                     RQIAADNLTQLTAFRHTFSHFHLDIVPMWLPVSSFTGCMDEGNALWYNLAQPPSVGLA
                     APVERLLQQLRTGAPV"
     gene            4589..5308
                     /gene="trmB"
                     /locus_tag="OQQ19_000500"
     CDS             4589..5308
                     /gene="trmB"
                     /locus_tag="OQQ19_000500"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HCS1802245.1"
                     /translation="MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPV
                     MGVEFSEDMLDFPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGA
                     CLASAHEEGLNNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVP
                     FAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSESNDYVPRPASRPVTK
                     FEQRGHRLGHGVWDLMFERVK"
     gene            5308..5634
                     /locus_tag="OQQ19_000501"
     CDS             5308..5634
                     /locus_tag="OQQ19_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggL family protein"
                     /protein_id="HCS1802246.1"
                     /translation="MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKTVDD
                     FINEVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEHQAIVRKWLEERKLDEVRTSEL
                     FDVWWD"
     gene            5818..6537
                     /locus_tag="OQQ19_000502"
     CDS             5818..6537
                     /locus_tag="OQQ19_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2884 domain-containing protein"
                     /protein_id="HCS1802247.1"
                     /translation="MMRKMLLAAALSVTAMTAHADYQCSVTPRDDVIVSPQTVQVKGE
                     NGNLVITPDGNVMYNGKQYSLNAAQREQAKDYQAELRSTLPWIDEGAKSRVEKARIAL
                     DKIIVQEMGESSKMRSRLTKLDAQLKEQMNRIIETRSDGLTFHYKAIDQVRAEGQQLV
                     NQAMGGILQDSINEMGAKAVLKSGGNPLQNVLGSLGGLQSSIQTEWKKQEKDFQQFGK
                     DVCSRVVTLEDSRKALVGNLK"
     gene            6713..7759
                     /gene="ansB"
                     /locus_tag="OQQ19_000503"
     CDS             6713..7759
                     /gene="ansB"
                     /locus_tag="OQQ19_000503"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 2"
                     /protein_id="HCS1802248.1"
                     /translation="MEFFKKTALAALVMGFSGAALALPNITILATGGTIAGGGDSATK
                     SNYTAGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKT
                     DGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAAD
                     KASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARK
                     HTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVF
                     DTLATAAKNGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQ
                     TKDPQQIQQIFNQY"
     gene            7876..8883
                     /locus_tag="OQQ19_000504"
     CDS             7876..8883
                     /locus_tag="OQQ19_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1202 family protein"
                     /protein_id="HCS1802249.1"
                     /translation="MKKQWIVGTALLMLMTGNAWADGEPPTENILKDQFKKQYHGILK
                     LDAITLKNLDAKGNQATWSAEGDVSSSDDLYTWVGQLADYELLEQTWTKDKPVKFSAM
                     LTSKGTPASGWSVNFYSFQSAASDRGRVVDDIKTNNKYLIVNSEDFNYRFSQLESALN
                     TQKNSIPALEKEVKALDKQMVAAQKAADAYWGKDANGKQMTREEAFKKIHQQRDEFNK
                     QNDSEAFAVKYDKEVYQPAIAACHKQSEECYEVPIQQKRDFDINEQRRQTFLQSQKLS
                     RKLQDDWVTLEKGQYPLTMKVSEINSKKVAILMKIDDINQANERWKKDTEQLRRNGVI
                     K"
     gene            complement(9038..10174)
                     /gene="hemW"
                     /locus_tag="OQQ19_000505"
     CDS             complement(9038..10174)
                     /gene="hemW"
                     /locus_tag="OQQ19_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HCS1802250.1"
                     /translation="MVKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLL
                     CDLDNDVAYAQGREVKTIFIGGGTPSLLSGPAMQTLLDGVRARLPLAADAEITMEANP
                     GTVEADRFVDYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSF
                     NLDLMHGLPDQSLEEALGDLRQAIELNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALW
                     DIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNLNYWRFGDYIGIGCGAHGKVTFPDG
                     RILRTTKTRHPRGFMQGRYLESQRDVEAADKPFEFFMNRFRLLEAAPRAEFSAYTGLC
                     EDVIRPQLDEAIAQGYLTECADYWQITEHGKLFLNSLLELFLAE"
     gene            complement(10167..10760)
                     /locus_tag="OQQ19_000506"
     CDS             complement(10167..10760)
                     /locus_tag="OQQ19_000506"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XTP/dITP diphosphatase"
                     /protein_id="HCS1802251.1"
                     /translation="MQKVVLATGNAGKVRELASLLSDFGLDIVAQTDLGVDSAEETGL
                     TFIENAILKARHAAKVTGLPAIADDSGLAVDALGGAPGIYSARYSGEDATDQKNLQKL
                     LETLKDVPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIF
                     FVPSEGKTAAELTREEKSAISHRGQALKLLLDALRNG"
     gene            complement(10768..11058)
                     /locus_tag="OQQ19_000507"
     CDS             complement(10768..11058)
                     /locus_tag="OQQ19_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417428.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggU family protein"
                     /protein_id="HCS1802252.1"
                     /translation="MNAVTVNDDGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVD
                     GQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQIKIINPQQIPPEIAALIN"
     gene            complement(11055..11621)
                     /gene="yggT"
                     /locus_tag="OQQ19_000508"
     CDS             complement(11055..11621)
                     /gene="yggT"
                     /locus_tag="OQQ19_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotic shock tolerance protein YggT"
                     /protein_id="HCS1802253.1"
                     /translation="MNTLTFLLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVT
                     QPIIGPLRRVIPAMGPIDSASLLVAYILSFIKAIVLFKVVTFLPIIWIAGLLILLKTI
                     GLLIFWVLLVMAIMSWVSQGRSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVL
                     LLYVINMGVAEVLQATGNILLPGMWMAL"
     gene            complement(11639..12343)
                     /gene="yggS"
                     /locus_tag="OQQ19_000509"
     CDS             complement(11639..12343)
                     /gene="yggS"
                     /locus_tag="OQQ19_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate homeostasis protein"
                     /protein_id="HCS1802254.1"
                     /translation="MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIA
                     EAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHT
                     IDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRL
                     RGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTM
                     VRIGTAIFGARDYSKK"
     gene            12361..13341
                     /locus_tag="OQQ19_000510"
     CDS             12361..13341
                     /locus_tag="OQQ19_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417425.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HCS1802255.1"
                     /translation="MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDALDV
                     EELLREWLDDDQRAILLENGQLDFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQ
                     LEQLGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
                     YIYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETG
                     HLVLATLHTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVAL
                     FELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQRVGEGRL"
     gene            complement(13517..13933)
                     /gene="ruvX"
                     /locus_tag="OQQ19_000511"
     CDS             complement(13517..13933)
                     /gene="ruvX"
                     /locus_tag="OQQ19_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HCS1802256.1"
                     /translation="MSGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNL
                     IERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVE
                     ARSGLFEQGGYRALNKGKVDSASAVIILESYFEQGY"
     gene            complement(13933..14496)
                     /locus_tag="OQQ19_000512"
     CDS             complement(13933..14496)
                     /locus_tag="OQQ19_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HCS1802257.1"
                     /translation="MNLQHHFLIAMPALQDPIFRRSVVYICEHNTNGAMGIIVNKPLE
                     NLKIEGILEKLKITPEPRDESIRLDKPVMLGGPLAEDRGFILHTPPSNFASSIRISDN
                     TVMTTSRDVLETLGTDKQPSDVLVALGYASWEKGQLEQEILDNAWLTASADLNILFKT
                     PIADRWREAAKLIGVDILTMPGVAGHA"
     gene            complement(14605..15555)
                     /gene="gshB"
                     /locus_tag="OQQ19_000513"
     CDS             complement(14605..15555)
                     /gene="gshB"
                     /locus_tag="OQQ19_000513"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HCS1802258.1"
                     /translation="MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLY
                     LINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVLLMRKDPPFDTEFIYATYIL
                     ERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILK
                     PLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEP
                     VPYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIG
                     DRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQQQ"
     gene            complement(15568..16299)
                     /gene="rsmE"
                     /locus_tag="OQQ19_000514"
     CDS             complement(15568..16299)
                     /gene="rsmE"
                     /locus_tag="OQQ19_000514"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014226833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HCS1802259.1"
                     /translation="MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFD
                     GSNQVFDAEITSASKKSVEVKVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIEL
                     GVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWC
                     AEQDEGLKLNLHPRASNSINTLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLG
                     PRVLRTETTALTAITALQVRFGDLG"
     gene            complement(16379..17086)
                     /gene="endA"
                     /locus_tag="OQQ19_000515"
     CDS             complement(16379..17086)
                     /gene="endA"
                     /locus_tag="OQQ19_000515"
                     /EC_number="3.1.21.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease I"
                     /protein_id="HCS1802260.1"
                     /translation="MYRYLSIAAVVLSAAFSGPALAEGINSFSQAKAAAVKVHADAPG
                     TFYCGCKINWQGKKGVVDLQSCGYQVRKNENRASRVEWEHVVPAWQFGHQRQCWQDGG
                     RKNCAKDPVYRKMESDMHNLQPSVGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKEK
                     AAEPPARARGAIARTYFYMRDQYNLTLSRQQTQLFNAWNKMYPVTDWECERDERIAKV
                     QGNHNPYVQRACQARKS"
     gene            complement(17181..17678)
                     /locus_tag="OQQ19_000516"
     CDS             complement(17181..17678)
                     /locus_tag="OQQ19_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HCS1802261.1"
                     /translation="MKTSRLPIAIQQAVMRRLREKLAQANLKLGRNYPEPKLSYTQRG
                     TSAGTAWLESYEIRLNPVLLLENSEAFIEEVVPHELAHLLVWKHFGRVAPHGKEWKWM
                     MENVLGVPARRTHQFELQSVRRNTFPYRCKCQEHQLTVRRHNRVVRGEAVYRCVHCGE
                     QLVAK"
     gene            complement(17755..19149)
                     /gene="galP"
                     /locus_tag="OQQ19_000517"
     CDS             complement(17755..19149)
                     /gene="galP"
                     /locus_tag="OQQ19_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/proton symporter"
                     /protein_id="HCS1802262.1"
                     /translation="MPDAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIA
                     DEFQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAA
                     PNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLS
                     DTAFSYTGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRLRDTS
                     AEAKRELDEIRESLQVKQSGWALFKENSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPK
                     IFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVL
                     GTMMHIGIHSPSAQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTA
                     TNWIANMIVGATFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIERN
                     LMKGRKLREIGAHD"
     gene            complement(19585..20739)
                     /gene="metK"
                     /locus_tag="OQQ19_000518"
     CDS             complement(19585..20739)
                     /gene="metK"
                     /locus_tag="OQQ19_000518"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HCS1802263.1"
                     /translation="MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACET
                     YVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPD
                     INQGVDRADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPW
                     LRPDAKSQVTFQYDDGKIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLT
                     SATTFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAA
                     YAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFF
                     DLRPYGLIQMLDLLHPIYKETAAYGHFGREHFPWEKTDKAQLLRDAAGLK"
     gene            complement(21043..21258)
                     /locus_tag="OQQ19_000519"
     CDS             complement(21043..21258)
                     /locus_tag="OQQ19_000519"
                     /inference="COORDINATES: protein motif:HMM:NF037550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802264.1"
                     /translation="MGITSAGMQSRDAECGERIFTRTVRQVKQQTTVHYFVSPPRPPV
                     KTNPQAKTLISTRLEVATRKKRRVLFI"
     gene            21394..21525
                     /gene="yqgB"
                     /locus_tag="OQQ19_000520"
     CDS             21394..21525
                     /gene="yqgB"
                     /locus_tag="OQQ19_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417414.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid stress response protein YqgB"
                     /protein_id="HCS1802265.1"
                     /translation="MKKKPVAQLERQHSLLENPCAYGLLSQFQAAIVVNCFTLNKII"
     gene            21534..23510
                     /gene="speA"
                     /locus_tag="OQQ19_000521"
     CDS             21534..23510
                     /gene="speA"
                     /locus_tag="OQQ19_000521"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HCS1802266.1"
                     /translation="MSDDMSMGLPSSAGEHGVLRSMQEVAMSSQEASKMLRTYNIAWW
                     GNNYYDVNELGHISVCPDPDVPEARVDLAQLVKTREAQGQRLPALFCFPQILQHRLRS
                     INAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLA
                     HAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPR
                     LGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVETLREAGRLDSLQLLHFHLGSQ
                     MANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNE
                     YANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEYTVPTAPAE
                     DAPRALQSMWETWQEMHEPGTRRSLREWLHDSQMDLHDIHIGYSSGTFSLQERAWAEQ
                     LYLSMCHEVQKQLDPQNRAHRPIIDELQERMADKMYVNFSLFQSMPDAWGIDQLFPVL
                     PLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEYDPENPPMLGFFMVG
                     AYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELSDEGDTVADMLQYVQLDPKTLLTQF
                     RDQVKKTDLDAELQQQFLEEFEAGLYGYTYLEDE"
     gene            23647..24567
                     /gene="speB"
                     /locus_tag="OQQ19_000522"
     CDS             23647..24567
                     /gene="speB"
                     /locus_tag="OQQ19_000522"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HCS1802267.1"
                     /translation="MSTLGHQYDNSLVSNAFGFLRLPMNFQPYDSDADWVITGVPFDM
                     ATSGRAGGRHGPAAIRQVSTNLAWEHNRFPWNFDMRERLNVVDCGDLVYAFGDAREMS
                     EKLQAHAEKLLAAGKRMLSFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCE
                     FDHGTMFYTAPKEGLIDPNHSVQIGIRTEFDKDNGFTVLDACQVNDRSVDDVIAQVKQ
                     IVGDMPVYLTFDIDCLDPAFAPGTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVA
                     PAYDQSEITALAAATLALEMLYIQAAKKGE"
     gene            complement(24773..25531)
                     /gene="loiP"
                     /locus_tag="OQQ19_000523"
                     /gene_synonym="yggG"
     CDS             complement(24773..25531)
                     /gene="loiP"
                     /locus_tag="OQQ19_000523"
                     /gene_synonym="yggG"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311838.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease LoiP"
                     /protein_id="HCS1802268.1"
                     /translation="MKIRALLVAMSVATVLTGCQNMDSNGLLSSGAEAFQAYSLSDAQ
                     VKTLSDQACQEMDSKATIAPANSEYAKRLTTIANALGNNINGQPVNYKVYMAKDVNAF
                     AMANGCIRVYSGLMDMMTDNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRVAAASA
                     GGIVGSLSQSQLGDLGEKLVNSQFSQRQEAEADDYSYDLLRQRGISPAGLATSFEKLA
                     KLEEGRQSSMFDDHPASAERAQHIRDRMSADGIK"
     gene            25809..27800
                     /gene="tkt"
                     /locus_tag="OQQ19_000524"
     CDS             25809..27800
                     /gene="tkt"
                     /locus_tag="OQQ19_000524"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HCS1802269.1"
                     /translation="MSSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDF
                     LKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPE
                     VGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMME
                     GISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDG
                     HDAASIKRAVEEARAVTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQ
                     LGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMP
                     SDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSG
                     SKAINEDAAGNYIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAAL
                     MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVE
                     RQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPELIFIATGSEVELAVA
                     AYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVG
                     LNGAIIGMTTFGESAPAELLFEEFGFTVDNVVAKAKELL"
     gene            28114..28557
                     /gene="cmtB"
                     /locus_tag="OQQ19_000525"
     CDS             28114..28557
                     /gene="cmtB"
                     /locus_tag="OQQ19_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001239649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IIA"
                     /protein_id="HCS1802270.1"
                     /translation="MRLSDYFPESSISVIHSAKDWQEAIDFSMVSLLDKNYISENYIQ
                     AIKDSTINNGPYYILAPGVAMPHARPECGALKTGMSLTLLEQGVYFPGNDEPIKLLIG
                     LSAADADSHIGAIQALSELLCEEEILEQLLTASSEKQLADIISHR"
     gene            28585..29973
                     /gene="cmtA"
                     /locus_tag="OQQ19_000526"
     CDS             28585..29973
                     /gene="cmtA"
                     /locus_tag="OQQ19_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICB"
                     /protein_id="HCS1802271.1"
                     /translation="MENKSARAKVQAFGGFLTAMVIPNIGAFIAWGFITALFIPTGWL
                     PNEHFAKIVGPMITYLLPVMIGSTGGHLVGGKRGAVMGGIGTIGVIVGAEIPMFLGSM
                     IMGPLGGLVIKYVDKALEKRIPAGFEMVINNFSLGIAGMLLCLLGFEVIGPAVLIANT
                     FVKECIEALVHAGYLPLLSVINEPAKVLFLNNAIDQGVYYPLGMQQASVNGKSIFFMV
                     ASNPGPGLGLLLAFTLFGKGMSKRSAPGAMIIHFLGGIHELYFPYVLMKPLTIIAMIA
                     GGMSGTWMFNLLDGGLVAGPSLGSIFAYLALTPKGSFLATIAGVTVGTLVSFAITSLI
                     LKMEKTVETESEDEFAQSTNAVKAMKQEGAFSLSRVKRIAFVCDTGMGSSAMGATTFR
                     KRLEKAGLAIEVKHYAIENVPADADIVVTHASLEGRVKRVTDKPLILINNYIGDPKLD
                     TLFNQLTAEHKH"
     gene            29988..31265
                     /locus_tag="OQQ19_000527"
     CDS             29988..31265
                     /locus_tag="OQQ19_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HCS1802272.1"
                     /translation="MKTKVAAIYGKRDVRLREFELPEITDNELLVSVISDSVCLSTWK
                     AALLGSEHKRVPDDLENHPVITGHECAGVIVEVGKNLTGKYKKGQRFVLQPAMGLPSG
                     YSAGYSYEYFGGNATYMIIPEIAINLGCVLPYHGSYFAAASLVEPMCCIIGAYHANYH
                     TTQYVYEHRMGVKPGGNIALLACAGPMGIGAIDYAINGGIQPSRVVVVDIDDKRLAQV
                     QKLLPVDLAASKGIELVYVNTKGMSDPVQTLRALTGDVGFDDIFVYAAVPAVVEMADE
                     LLAEDGCLNFFAGPTDKNFKVPFNFYNVHYNSTHVVGTSGGSTDDMKEAIALSATGQL
                     QPSFMVTHIGGLDAVPDTVLNLPDIPGGKKLIYNGVTMPLTAIADFAEKGKTDPLFKE
                     LARLVEETHGIWNEQAEKYLLAQFGIDIGEAAQ"
     gene            31262..32227
                     /gene="yggF"
                     /locus_tag="OQQ19_000528"
     CDS             31262..32227
                     /gene="yggF"
                     /locus_tag="OQQ19_000528"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HCS1802273.1"
                     /translation="MMSLAWPLFRVTEQAALAAWPQTGCGDKNKIDGLAVTAMRQALN
                     DVAFRGRVVIGEGEIDHAPMLWIGEEVGKGDGPEVDIAVDPIEGTRMVAMGQSNALAV
                     MAFAPRDSLLHAPDMYMKKLVVNRLAAGVIDLSLPLADNLRNVARALGKPLDKLRMVT
                     LDKPRLSAAIEEATQLGVKVFALPDGDVAASVLTCWQDNPYDVMYTIGGAPEGVISAC
                     AVKALGGDMQAELIDFCQAKGDYTENRQIAEQESKRCKAMGVDVNRVYSLDELVRGND
                     ILFSATGVTGGELVNGIQQTANGVRTQTLLIGGADQTCNIIDSLH"
     gene            32249..32758
                     /gene="fumE"
                     /locus_tag="OQQ19_000529"
     CDS             32249..32758
                     /gene="fumE"
                     /locus_tag="OQQ19_000529"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarase E"
                     /protein_id="HCS1802274.1"
                     /translation="MAKLTEDDVLEQLDAQDNLFSFMKTAHSILLQGIRQFLPSLFVD
                     NDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQD
                     ETPGFADDMTWDFISNVNSITRNAMLYDALKAMKFADFAVWSEARFSGMVKTALTLAV
                     TTILKELTP"
     gene            32755..33468
                     /locus_tag="OQQ19_000530"
     CDS             32755..33468
                     /locus_tag="OQQ19_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside/nucleotide kinase family protein"
                     /protein_id="HCS1802275.1"
                     /translation="MKIELTVNGLKIQAQYQNEEIENVHKPLLRMLAALQTVNPQRRT
                     VVFLCAPPGTGKSTLTTFWEYLAQQDPELPAIQTLPMDGFHHYNSWLDAHQLRPFKGA
                     PETFDVAKLAENLRQVVEGDCTWPQYDRQKHDPVEDALHVTAPLVIVEGNWLLLDDEK
                     WCQLAQFCDFSIFINAPATALRERLVGRKLAGGVSLADAETFYDRTDGPNVRRVLEES
                     LPANLTLMMTATGEYRLVD"
     gene            complement(33440..34117)
                     /locus_tag="OQQ19_000531"
     CDS             complement(33440..34117)
                     /locus_tag="OQQ19_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708691.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HCS1802276.1"
                     /translation="MLTLNQISYRWPGAATDCLCDISLQLKQGEWLALTGDNGAGKST
                     LLRVMAGLLTPTAGTVMLQQQAMKNLKNRQRAAKVGVLFQEAENQLFHSTVADEIAFG
                     LKLQKCPADEITQRTHAALQCCQLADTANSHPLDLHSAQRRMVAVACLEALSPPLLLL
                     DEPSRDFDENWLSVFESWLEKCRQRGTSVVAISHDAAFTRRHFSRVVRLEDGVIRNVN
                     PPDDIHP"
     gene            complement(34111..34788)
                     /locus_tag="OQQ19_000532"
     CDS             complement(34111..34788)
                     /locus_tag="OQQ19_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     ATP-binding protein"
                     /protein_id="HCS1802277.1"
                     /translation="MVTLEQFRYCPTHSTHPPFCYDFHYVKPGMVAIFGDNGSGKSTL
                     AQLMAGWYPDFLPGEITGTGTLLGTPIGHLPLNEQSATIQLVQQSPYLQLSGCTFSVE
                     EEVAFGPENLCLAEAEIMARIDAALTLTECQPLRHRHPATLSGGETQRVVIACAIAMQ
                     PKLLILDEAFSRLTPQASEMLLQRLQHWAFERGSLIILFERHRTPFLNYCQQAWQLQN
                     GALQPLC"
     gene            complement(34776..35483)
                     /locus_tag="OQQ19_000533"
     CDS             complement(34776..35483)
                     /locus_tag="OQQ19_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HCS1802278.1"
                     /translation="MHPFTSLTLWALAACTTLILPAQTILPIYSAATFFCLIALKATR
                     RRAKYVVWLMFSLGAGLWLVHGGWLPEWLSGTPRSPERWSHAITLWLRILVIVSTSQL
                     WMQYVPVQCFIRALFASRLPPGVAYLFAGPLLVVEQLKRQLAIIHEAQRARGVPLDEG
                     WYQRLRAMPALIIPLTHNALNDLAVRGAALDMRAFRIHNRRTTLWAPADSTLQRVARY
                     TMILLMLTEFGAWIWLR"
     gene            complement(35484..36062)
                     /locus_tag="OQQ19_000534"
     CDS             complement(35484..36062)
                     /locus_tag="OQQ19_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HCS1802279.1"
                     /translation="MARSHFSSQALVLIVISIAINMIGGQLASMVKLPIFLDSIGTLI
                     SAVLLGPVIGMLTGLLTNLLWGLLTDPIAAAFAPVAMVIGLVAGWLARAGWFRTLPKV
                     VVSGVIITLAVTVVAVPLRTALFGGVTGSGADLFVAWMHSMGQNLVESVAITVIGANL
                     VDKILTAVIVWLLLRQLPIRTTRHFPAMAAVR"
     gene            complement(36085..36516)
                     /locus_tag="OQQ19_000535"
     CDS             complement(36085..36516)
                     /locus_tag="OQQ19_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS1802280.1"
                     /translation="MMTLPYPYSSSARFYALRLLPGQEVFSQLHAFAQQHQLHAAWIA
                     GCTGSLTDVALRYARQEGTTLLNGTFEVISLNGTLEQSGEHLHLCVSDPHGTMLGGHM
                     MPGCTVRTTLELVIGSLEELAFSRQPCALSGYDELHISPVK"
     gene            36888..37907
                     /gene="epd"
                     /locus_tag="OQQ19_000536"
     CDS             36888..37907
                     /gene="epd"
                     /locus_tag="OQQ19_000536"
                     /EC_number="1.2.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="erythrose-4-phosphate dehydrogenase"
                     /protein_id="HCS1802281.1"
                     /translation="MTVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGM
                     AHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGV
                     YGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCI
                     IPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAG
                     ITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIV
                     DYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA
                     TVAFR"
     gene            37957..39120
                     /gene="pgk"
                     /locus_tag="OQQ19_000537"
     CDS             37957..39120
                     /gene="pgk"
                     /locus_tag="OQQ19_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HCS1802282.1"
                     /translation="MSVIKMTDLDLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTI
                     ELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDGVDVA
                     EGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADV
                     ACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIA
                     NTFIAAQGHDVGKSLYEADLVDEAKRLLTTCNIPVPSDVRVATEFSETAPATLKSVND
                     VKADEQILDIGDASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA
                     FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEERAKK"
     gene            39335..40414
                     /gene="fbaA"
                     /locus_tag="OQQ19_000538"
     CDS             39335..40414
                     /gene="fbaA"
                     /locus_tag="OQQ19_000538"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016505616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HCS1802283.1"
                     /translation="MSKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSIN
                     AVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYG
                     VPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSK
                     YLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFT
                     IAASFGNVHGVYKPGNVVLTPTILRDSQEYVSKKHNLPHNSLSFVFHGGSGSTAQEIK
                     DSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVW
                     LRAGQTSMIARLEKAFQELNAIDVL"
     gene            40772..41632
                     /gene="mscS"
                     /locus_tag="OQQ19_000539"
     CDS             40772..41632
                     /gene="mscS"
                     /locus_tag="OQQ19_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small-conductance mechanosensitive channel MscS"
                     /protein_id="HCS1802284.1"
                     /translation="MEDLNVVDSINGAGSWLVANQALLLSYAVNIVAALAIIIVGLII
                     ARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA
                     AGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADG
                     KIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKD
                     REMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVN
                     FKRVKEDKAA"
     gene            41771..42406
                     /gene="argO"
                     /locus_tag="OQQ19_000540"
     CDS             41771..42406
                     /gene="argO"
                     /locus_tag="OQQ19_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine exporter ArgO"
                     /protein_id="HCS1802285.1"
                     /translation="MFSYYFQGLDLGAAMILPLGPQNAFVMNQGIRRQYHIMIALLCA
                     ISDLVLICAGIFGGSALLMQSPWLLALVTWGGVVFLLWYGFGAFKTAMSSNIELASAE
                     VLKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWF
                     FGLAILAAWLAPRLRTAKSQRIINLVVGCVMWFIALQLARDGIAHAQALFS"
     gene            42499..43239
                     /locus_tag="OQQ19_000541"
     CDS             42499..43239
                     /locus_tag="OQQ19_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative stress defense protein"
                     /protein_id="HCS1802286.1"
                     /translation="MKFKVIALAALMGISGMAAQANELPDGPHIVTSGTASVDAVPDI
                     ATLAIEVNVAAKDAATAKKQADERVAQYISFLELNQIAKKDISSANLRTQPDYDYQDG
                     KSILKGYRAVRTVEVTLRQLDKLNSLLDGALKAGLNEIRSVSLGVAQPDAYKDKARKA
                     AIDNAIHQAQELANGFHRKLGPVYSVRYHVSNYQPSPMVRMMKADAAPVSAQETYEQA
                     AIQFDDQVDVVFQLEPVDQQPAKTPAAQ"
BASE COUNT        10610 a        10831 c        11559 g        10398 t
ORIGIN      
        1 atctaacccg acgtacaatg tgttattgtt gttcatgctg gcctccgtgg tggaaatacc
       61 ggggtgtagc aacagctcac ccatgcggct ctgacaacga tgttaacccg cgttaaatat
      121 cccacgttgg ccagcatctg tctcacggaa agtcatactg ccttatattc gcggtgaagt
      181 ggagttggtg cggattcgtg atgccgaagg gcgaattgcg gcagaagggg cgttgcctta
      241 tccacctggc gtgctttgcg tggtacccgg ggaagtctgg ggtggggcgg ttcaacgtta
      301 tttccttgca ctggaagaag gggtaaattt gttgccggga ttttcgccgg agctgcaagg
      361 tgtttatagc gaaaccgatg cggatggcat gaaacggttg tacggttatg tgttgaagta
      421 agaataaaaa aaacgggtca ccttctggcg acccgttttt ctttgcgtaa ttagtggcta
      481 accgtctgtg tgcctgtcgg gacacgaacg tgtttatatt tgaacatcgc catgaacgcg
      541 aaggccagaa ccacggagta accagcgaaa atcaaccata cggtctgcca gtcggtaatg
      601 ccgttttggg tgtacatctc aacaacttta ccgctcacga tgccgccgag gatacagccg
      661 aagccgttag tcatcatcag gaacatccct tgtgcactgg cgcgaattgc cgggctaact
      721 tctttttcga caaacaccga accagagatg ttgaagaagt cgaatgcgca accgtaaacg
      781 atcatcgaca gtaccagcag tacagtaccg aacggagtcg ggtcgccgta agcaaacagc
      841 gcaaaacgca ggatccacgc cacaatactg atcatcatta cgttcttaat accgtagcgg
      901 cttaagaaga acgggatggt cagaatgaac agggtttcag agatctgcga aatcgacatg
      961 atgattgacg catgctgcac aataaagctg ctggcaaaca tcggatcttt gtcgaagctg
     1021 tgcaggaagg tattaccgaa catgttggta atctgcagtt ccgcgcccag cagcattgag
     1081 aagataaaga agattgccat acgcttgttt ttaaacagcg cgaatgcatc gaggcccagc
     1141 agggttgtcc agctctgatt cgcttgctgt ttagcaaccg gaatatgcgg cagagtcagg
     1201 gtaaacagaa ccagaatggc ggaaagtgct gcgccaatat acagctgcat gtggcttaat
     1261 tcgaagccag acaggctcac cacccacatt gccatgataa agccgatggt gccccagata
     1321 cggattggcg ggaagtcagt aacgatatcc atcccggcat tttgcaggcg atagtaagag
     1381 atggtgttga ttaacccaag cgttgacata taagcaaacg agttaatcaa tatcacaagg
     1441 aacatcgcct ccggtgtcgt gacctgtgcc gccatgaaca gcgtgatagc gccaatggtg
     1501 tggcaaatgg catataccca tttcgcactt aaccatttgt cggccacaat ccccagcagc
     1561 gcaggcataa agaccgctgc gatacccagt gagctataaa ctgcgccaat agaagcaccg
     1621 tcaaacttca gggtaacaaa catataggag ccgagggtcg tcagccaact tccccacaga
     1681 cagaactgca gaaaagagag gattttcagc tgcagcttaa gattcatgtt aatttcctca
     1741 catcgtgatg cggatgagtg tttgaaaaag cacatttgac cgtgcgagat gatgggattc
     1801 tatcaacttc gcggactggt tttttgttac ctgtggcaaa taattgcaaa cattcccaat
     1861 ttgcaaaacg aaattgtgat gtggataaca tttttgcccc tgagcatcgt caggggcggt
     1921 taatggaatt atcggcggcg gtaggatttt tgcgcggtat tcactttata aagataacgg
     1981 cgagattccg cagagggatg gcgggtcgtc agcgtctgat aaacatcgcc cggcgtcatg
     2041 gtgttaataa tattggcagc ctgaatctta tcattcgaaa agactcgcag cacgctgcct
     2101 gcgccgccgt tataggcggt gatgacggca taacgccgcg atgttgggtt atcaattccg
     2161 ccgagataaa cattgttcag catcgccaga tacgcggtgc cggtatcaat attgctggca
     2221 ggatcaaaca agaaactgcg gctcggcgtg ccggatttcc cctgcgagcg gaacacatct
     2281 ttcccggcag tatgttgtac cacctgcatt aatcccagcg catcggaacg gctgaccgca
     2341 tacgggttaa aggaagattc ggtctgcata attgccagaa tcagcgactc atcaacgcca
     2401 tatttccgtg acgcctggcg gaccatgccg agatatttgt gcgcacgttt atcaaggtgg
     2461 ttcggtacca tgttaatggt gacgctgtag atgatacgca gcccgttact gcggctttgc
     2521 agacggtttt tcagcagata atccgcgaag ttgcttgcgc gaccttccca gcgaatcggc
     2581 tgcccggtgt tgtccaccac ctgaccgtaa aggaaaggtt ctttcgaaat cgtaatatca
     2641 tcaacgtcgg aatagagatc gaccgaactc ggatcgtcac ccatcagcaa cgttttgata
     2701 attgcccggc gcaaatgcgc ggcaggttct gtcccggcga tagtttcgat agtaatcgta
     2761 ccgtcatcga agttgatgtg gctgcgggtc tgatattgat cggtgtattt cacgtagtcc
     2821 ttaggaccgg cgatcaccac ctctttgaat ccccagatgt tctcaatatt gtgggcaaat
     2881 tgccccatca gaatatcaaa accgttggta tctttgaccc aggcttcgtt ataggtatcg
     2941 ccttttttgg tcgtcgaaca ggagatgagc aacggcgcaa tcaaagccag cgcgagatat
     3001 tttttcatca ttccgggtgc gtgttgtgtt tgtttttatg caagttgccg gaggcgtgct
     3061 ccggcactgt ttttattttt tatcttccgg cgtatagccc tcgatatgca cctctttacc
     3121 ctcgaacagg aagttgacca tctcctgctc aagcagcttg cggtgctcgg cattcatcat
     3181 gttgagtttc ttttcattaa tcagcatggt ttgcttgtgc tgccactgcg cccaggcttc
     3241 tttggagatc tcgttataga tgcgttttcc cagctcgccg gggtacagct gaaaatcctg
     3301 accttctgct tcacgttgca ggaaagtaca aaaaatcgtt ctgctcataa atcatcctct
     3361 ttatcgactc acgcgctaaa ccggcgcgcc agtgcgtaac tgctgtaaca aacgctccac
     3421 gggagccgcc aggccaactg acggcggttg cgctaagtta taccagagcg cattgccttc
     3481 atccatgcag ccggtgaatg acgacacggg aagccacata ggcacaatat ctaagtggaa
     3541 atggctgaag gtatgccgaa acgcggtcag ttgcgtcagg ttatcggcag caatctgccg
     3601 ttgcgccagc cactgccgca aactttcttc gtcggcaaac tgcgggaaac agtataaacc
     3661 gccccacaat ccgctcggcg gacgctgcgc cagcaatact tcatcttcgt gctgtaacag
     3721 caaaaagtag ccggtgcgct ccggcagcgt ctgtttcggt tttttgcccg gataaagcga
     3781 ccagctatta ttggcggcgg caatacatcc gttttgtagc ggacagagcg aacatttcgg
     3841 cttcgagcgc gtacaaatca tcgcgcccaa atccatcatc gcctgattaa accgttccac
     3901 gccgaccgcg ggcgtcacct gctcgctcaa actccataat ttattctcga cctctttttt
     3961 cccaggccag ccgcttacag catagcagcg cgccagcacg cgtttgacgt taccgtcgag
     4021 aatcggaaag tgcttaccca gagaaagcga gagaatcgcg cctgcggtgg aacgcccgac
     4081 gcccggtaac gccgcgactt cttcaaaggt ttccgggaat ttaccgccgt gtaaggtcgc
     4141 cacttgttgt gccgctttat gcagattgcg cgcgcgggcg taatagccaa gcccggtcca
     4201 caagtggaga acttcgtcga gcggcgcatt ggcgagatcg gtcaccgtcg ggaagcgcgc
     4261 cataaagcgt tcaaaatagg ggataacggt cgcaacctga gtttgttgca acatcacttc
     4321 tgagagccat actttgtagg gcgtcttgtc aatttgccag ggcagcgttt ttcgcccgta
     4381 tttatcgtac cagtccagaa cctgggctga aaattgcgac gcttgcatgg tcaccgaatt
     4441 cactgttgtt gggggcaaga ttgcagcaca gcgacggcag ggtgtaaacc ggaactttcc
     4501 gcagccacgg ccttatcatg cttgcatccg gcaactaact ttggataatg cccgttttca
     4561 gaacactttc acaagcgact aaatctttat gaaaaacgac gtcatttcac cggaatttga
     4621 tgaaaacggc cgcccactgc gccgtatccg tagttttgtg cgccgccagg ggcgactgac
     4681 caaaggccag gaacatgcgc tggaaaacta ctggccggtg atgggcgttg agttcagcga
     4741 agatatgctg gatttccccg cgctttttgg ccgtgaagcg ccggtgacgc ttgagattgg
     4801 ttttggcatg ggggcgtcgc tggtggcaat ggctaaagat cgccctgagc aggacttcct
     4861 cggcattgaa gtgcattcac cgggcgttgg tgcgtgcctg gcttctgcgc atgaagaagg
     4921 tttaaacaac ctgcgagtga tgtgtcacga tgcggttgaa gtgctgcata aaatgattcc
     4981 tgacaattca ttgcgcatgg tgcagctctt tttccctgac ccgtggcaca aagcgcgcca
     5041 taataaacgc cgtatcgtac aggtgccgtt tgccgaactg gtaaaaagca aactgcagct
     5101 ggggggcgta ttccatatgg cgaccgactg ggaaccttat gcggaacata tgcttgaagt
     5161 gatgtcttct attgacggtt ataaaaacct gtcagagagc aatgattacg taccgcgtcc
     5221 ggcatcacgt ccggtgacga aatttgaaca acgtggtcat cgtcttggtc acggagtatg
     5281 ggacttaatg ttcgagaggg tgaaataatg gcaaagaacc gtagccgtcg tctgcgtaaa
     5341 aaaatgcaca tcgacgaatt ccaggaatta ggattttcgg tggcatggcg attcccggaa
     5401 ggtacatcgg aagaacagat tgataaaacc gttgatgatt ttattaacga ggttatcgaa
     5461 ccgaacaaac tggcctttga cggcagcggt tatctggcct gggaaggtct gatctgcatg
     5521 caggaaatcg gcaaatgcac cgaagaacat caggcgattg tgcgtaagtg gctggaagag
     5581 cgcaaactgg atgaggtacg caccagcgaa cttttcgacg tttggtggga ctaagaaagc
     5641 atacgggcga tgacaaatgc aaaactgcct gatgcgctac gcttatcagg cctggaaaga
     5701 tgcacgatcg agtaggcggg ataaggtgtt tacgccgcat ccggcatgga aaacgcgtac
     5761 tttgttatca atctggggcc agcaaatgct ggcctgattt tttcttgagg gaagactatg
     5821 atgcgcaaaa tgctgctggc ggcagcactt tcagtgacgg caatgaccgc tcacgccgac
     5881 taccagtgca gcgtcacgcc gcgtgacgat gtgattgtca gcccgcaaac cgtgcaggtg
     5941 aagggcgaaa acggcaatct ggtgatcacg ccagacggca acgtgatgta taacggtaag
     6001 caatattccc tgaatgccgc ccagcgcgag caggcgaagg attatcaggc tgaactacgc
     6061 agcacgctgc cgtggattga tgaaggcgcg aaaagccgcg tcgaaaaagc ccgtattgcg
     6121 ctggataaaa ttatcgttca ggagatgggc gaaagcagca aaatgcgcag ccgtctgacc
     6181 aaacttgatg cgcaactgaa agagcagatg aaccgcatta tcgaaacgcg cagcgatggc
     6241 ctgacgtttc actataaagc cattgatcag gttcgcgccg aaggccagca attagtgaat
     6301 caggcaatgg gtggaatttt acaggacagc attaatgaaa tgggcgcgaa agcggtgctg
     6361 aaaagcggcg gtaacccatt acagaatgtg ctgggaagcc tgggggggct gcaatcctca
     6421 atccaaaccg agtggaaaaa gcaggaaaaa gatttccagc agtttggcaa agatgtttgt
     6481 agccgcgttg tgactctgga agatagccgc aaagccctgg tcgggaattt aaaataatcc
     6541 tctattttaa gacggcataa tactttttta tgccgtttaa ttcttcgttt tgttacctgc
     6601 ctctaacttt gtagagctcc aaaatatatt cacgttgtaa attgtttaac ctcaaatttc
     6661 ccatacagag ctaagggata atgcgtagcg ttcacgtaac tggaggaatg aaatggagtt
     6721 tttcaaaaag acggcacttg ccgcactggt tatgggtttt agtggtgcag cattggcatt
     6781 acccaatatc accattttag caaccggcgg gaccattgcc ggtggtggtg actccgcaac
     6841 caaatctaac tacacagcgg gtaaagttgg cgtagaaaat ctggttaatg cggtgccgca
     6901 actaaaagac attgcgaacg ttaaaggcga gcaggtagtg aatatcggct cccaggacat
     6961 gaacgataat gtctggctga cactggcgaa aaaaattaac accgactgcg ataaaaccga
     7021 cggcttcgtc attacccacg gtaccgacac gatggaagaa accgcttact tcctcgacct
     7081 gacggtgaaa tgcgacaaac cggtggtgat ggtcggcgca atgcgcccgt ccacgtccat
     7141 gagcgcagac ggtccattca acctgtataa cgcggtagtg accgcagctg ataaagcatc
     7201 cgctaatcgt ggcgtgctgg tggtgatgaa cgacaccgta ctggacggtc gcgatgtaac
     7261 caaaaccaac accaccgacg tagcgacctt caagtctgtt aactacggtc ctctgggata
     7321 cattcacaac ggtaagattg actaccaacg taccccggca cgtaagcaca ccagcgatac
     7381 gccattcgat gtctctaagc tgaatgagct gccgaaagtc ggcatcgttt ataactacgc
     7441 taacgcatcc gatcttccgg ctaaagcact ggtagatgcg ggctatgatg gcatcgttag
     7501 cgctggtgtg ggtaatggta acctgtataa atccgtgttc gacaccctgg caaccgccgc
     7561 gaaaaacggc actgcagtag tgcgttcttc ccgcgtaccg acgggtgcta ccactcagga
     7621 tgctgaagtg gatgatgcga aatacggctt cgtcgcctct ggcacgctga acccgcaaaa
     7681 agcgcgcgtc ctgctgcagc tggctctgac gcaaaccaaa gatccgcagc agatccagca
     7741 gatcttcaat cagtactaat cacctcgctc cggtatcgtg ccggggcttt ttcacttcag
     7801 acttacgtcc attgccaatt ttcattaccc taatgataat caccggaata aattatttcg
     7861 cgtgaggttt ttcgggtgaa aaagcaatgg attgttggca cggcactgct tatgttgatg
     7921 actggtaatg cctgggcaga tggcgaaccg ccaactgaaa atatcttaaa agatcaattc
     7981 aaaaagcagt atcacggcat tctcaagctt gatgctatca ccttaaaaaa tcttgatgct
     8041 aagggtaatc aggccacctg gtcagcggaa ggcgatgtct cttccagtga cgatctctat
     8101 acctgggtcg gtcagttggc agattacgaa ctgctcgaac agacctggac gaaagataaa
     8161 ccggtaaaat tctcggcgat gttaaccagt aaaggaacgc ccgcgtctgg ctggtcggtg
     8221 aacttttact cttttcagtc ggcagccagc gatcgtgggc gggtggtcga cgatatcaaa
     8281 acgaataata aatatctgat cgtgaatagc gaagatttca attatcgctt tagtcagctt
     8341 gaatctgcgt tgaataccca gaagaactcg attcctgcgc tggaaaagga agtgaaagcg
     8401 cttgataagc aaatggtggc ggcgcagaaa gcagcggatg catattgggg aaaagatgca
     8461 aacggtaagc aaatgacccg cgaagaagcc tttaaaaaaa ttcaccaaca gcgtgatgag
     8521 tttaataaac agaacgatag cgaggcgttc gcggttaaat atgacaaaga ggtttatcaa
     8581 ccggcgattg cggcatgtca taaacagagt gaagagtgtt atgaagtgcc gattcagcag
     8641 aaacgagatt tcgatatcaa cgaacaacgg cgacagactt ttctgcaatc acaaaaactc
     8701 agccgtaaat tgcaggatga ctgggtaacg ctcgaaaaag ggcaatatcc gttaacgatg
     8761 aaagtttcag aaataaacag taaaaaagtc gcgattttga tgaaaattga cgatatcaac
     8821 caagctaatg aacgctggaa aaaagatacc gaacaactgc ggcgcaatgg ggtgattaag
     8881 taagtttgat atagtgcacg atttgtagca ggatgcggcg ttgaccccgc atccggcaat
     8941 caacgtctga tgcgacgctt gcgcgtctta tcagacctac aaccgttgcc acatgtaggc
     9001 tggataaggc gttcacgccg catccggcaa tacaagttta ctcagccaga aaaagctcca
     9061 gcagcgaatt taaaaacagc ttcccatgtt ccgttatctg ccagtaatcc gcacattctg
     9121 tgagataacc ctgggcaatc gcctcgtcta actgtgggcg aatcacatct tcgcaaagcc
     9181 cggtatacgc actaaactct gcgcgtggcg cggcctccag caagcgaaag cggttcataa
     9241 agaactcaaa cggcttatct gcggcttcga catcacgctg gctttccaga taccttcctt
     9301 gcataaaacc acgaggatga cgcgttttag tggtacgcag aatgcgccca tccgggaagg
     9361 tgactttgcc gtgcgcgccg cagccaatac cgatgtagtc accaaatcgc cagtagttga
     9421 gattgtgctg gcactgataa ccgggtttgg cgtaagcgga agtttcatat tgctgataac
     9481 ccgctgcggt taataactga tgcccctgtt cgaaaatatc ccacagcgcg tcatcgtccg
     9541 gcagcaccgg tggtcgcgaa ccaaacagcg tattgggttc gatggtcagt tgataccagg
     9601 aaagatgcgg cggattcagt tcaatggcct ggcgtagatc gccaagcgcc tcttccagtg
     9661 attgatccgg tagtccatgc atcaaatcaa ggttaaagct acgtaaccct aaaccgctcg
     9721 ccagctttgc cgctcgtttc gcttcttgcg ggccatgaat gcgcccaagt cgtttcagct
     9781 tttcttcgct aaaactctgc acaccaatag agatgcggtt cacaccagca cgctgataat
     9841 cgacaaagcg atcggcttct accgtaccag ggttcgcttc catagtaatt tctgcatccg
     9901 ctgccagcgg caaacgcgca cgcacgccgt ccagcagcgt ttgcatcgcc gggccggaaa
     9961 gcaggctcgg cgtaccaccg ccaataaaga ttgtctttac ttcacggccc tgagcgtaag
    10021 ccacatcatt gtccagatcg caaagcagat gctgaacata atcgtcgtgc ggcacttctc
    10081 ctttcaacgc gtgagagttg aaatcgcagt acgggcattt ctgcacgcac cacgggatgt
    10141 gaatgtagag actcagcggc ggtaatttaa ccattacgta aagcgtccag cagcagtttc
    10201 aacgcctgac cacggtggga aatggcgctc ttttcttcgc gggtcagttc ggcggcggtt
    10261 ttcccttcgg aaggtacgaa gaagattgga tcataaccaa agccaccagt gcccgctggt
    10321 tcgcgagtaa tcacgcccgg ccagctgccg tggcatacca gcggagtcgg atcttccgcg
    10381 tgacgcagat ataccagcac gcagtggaaa cgtgcctgac gttggtcgtc cggtacgtct
    10441 ttcagtgttt ccaacagttt ttgcagattc ttttgatcgg tcgcgtcttc accggaataa
    10501 cgcgcggagt aaatacccgg cgcgccaccc agcgcatcta ccgccagacc agagtcgtcg
    10561 gcaattgccg gtaaaccggt cacttttgcc gcatggcgcg ctttcagaat cgcgttttcg
    10621 ataaaggtta ggccggtttc ttcagcggaa tcaacgccga ggtctgtttg tgccacgata
    10681 tcaagaccaa agtcgctaag cagcgacgcc agctcacgca ctttaccggc attgccggtt
    10741 gcgaggacaa ctttttgcat aggataccta attaattaac gccgcgattt ctggcgggat
    10801 ttgttgcgga ttaatgattt taatttgttt gtggcggcca agttcgcctt tttcaatcac
    10861 cacctggctt ttggcaaccc ggaattgctt accgagaaac ttcaccagat gactgttggc
    10921 ctggccgtca actggcggcg cggtaatggc gactttaact tcgtcgccat gtaaaccgac
    10981 aatagaatca cggctggctt tcggctgaat atagagccgt aaaaccagac cgtcatcatt
    11041 aactgttacg gcattcataa cgccatccac atccccggca gcaggatgtt tccggttgcc
    11101 tgtaatactt ctgcgacacc catattgatg acatacagca gcagaacgag gatcatcggc
    11161 gagaaatcaa tcccacccat tgccggtagc aagcggcgaa tcgggcgcag cagcggatcg
    11221 gccagctgaa tcagcacgta ttcaatcggg ctacgaccct ggcttaccca gctcataatc
    11281 gccatcacca gcaggaccca gaaaatcagc aagccgatgg ttttcagcag aatcagtaaa
    11341 ccggcaatcc agatgattgg caggaaggtc accactttaa acagcacaat ggctttgata
    11401 aaactgagaa tataggcaac cagcagcgag gcgctgtcaa tgggacccat tgccggaata
    11461 acgcggcgca gtggcccgat aattggctgc gttaccttca ctacaaactg tgagaagggg
    11521 ttgtaaaaat cacaatgagc ccactgcatc cagatgcgta ataacagcac catggtatac
    11581 agctcaatga ccgttgaaag caggaaagtc aacgtattca tggcgttcct ttaattcctt
    11641 attttttaga gtaatcacgc gcaccaaaaa ttgcagtgcc gatacgaacc atcgtgctac
    11701 ctgccgcaat ggcggcttcc atatcgtccg acattcccag agagagcgtg tcgatatgcg
    11761 ggtagcgcgt tttcagtccg gcaaatgcta cagccatttg gcgtgcaact tcaaactgcc
    11821 ttacatattc tgactcaggc gcagggattg ccatcagccc gcgcagacgt aaacgcggta
    11881 gttcagcgac cgccgctgcc agctcgtcca gttctgccag ttgaatcccg gacttactgt
    11941 tttcatcact aatattaatt tgaatcagta cgttaagagg gggaagttct gccgggcgct
    12001 gatcgttgag gcgggtagca atgcgcaaac ggtcgatggt atgacaccag tcgaaatgct
    12061 ctgccaccag gcggctttta ttagactgca acgggccaat aaaatgccat tctaatcctg
    12121 ttacgcccag ttcctgaaag tggcgaattt tatctacccc ttcctgaacg tagttttcac
    12181 caaattgacg ctgcccggca tcaatggctt ctgcgatggc gctcgcaggt tttgttttac
    12241 tgactgcaag cagcgtaatt tcttctggag aacggccgca acgcgttgca gccgctgaga
    12301 ttttgtcccg gacctgtgcc aggttatgcg caatatcgtt cattttccga ggatcttagt
    12361 atgaatatgg aagaaattgt ggcccttagt gtaaagcata acgtctcgga tctacacctg
    12421 tgcagcgcct ggcccgcacg atggcgcatt cgcgggctaa tggaagctgc gccgtttgat
    12481 gcgctggacg tcgaagagct actgcgggag tggctggatg acgatcagcg ggcaatattg
    12541 ctggaaaatg gccagctgga ttttgccgtg tcgctggcgg aaaaccagcg attgcgtggc
    12601 agcgcattcg cgcaacggca tggcatttcg ctggcgttac ggctgttacc ttcgcactgc
    12661 ccgcagctcg aacagcttgg cgcaccaacg gtattgccgg aattactcaa gagcgagaat
    12721 ggcctgattc tggtgacggg ggcgacgggg agcggcaaat ctaccacgct ggcggcgatg
    12781 gttggctatc tcaatcaaca tgccgatgcg catattctga cgctggaaga tcctgttgaa
    12841 tatatctatg ccagccagcg atgtttgatc cagcagcggg aaattggttt gcactgtatg
    12901 acgttcgcat cgggattgcg ggccgcattg cgggaagatc ctgatgtgat tttgctcgga
    12961 gagctgcgtg acagcgagac aatccgtctg gcactgacgg cggcagaaac cgggcatttg
    13021 gtgctagcaa cattacatac gcgtggtgcc gcgcaggcag ttgagcgact ggtggattca
    13081 tttccggcgc aggaaaaaga tcccgtacgt aatcaactgg caggtagttt acgggccgtg
    13141 ttgtcacaaa agctggaagt ggataaacag gaaggacgcg tggcgctgtt tgaattattg
    13201 attaacactc ccgcggtggg gaatttgatt cgcgaaggga aaacccacca gttaccgcat
    13261 gttattcaaa ccgggcagca ggtggggatg ataacgtttc agcagagtta tcagcagcgg
    13321 gtgggggaag ggcgtttgtg acgttgccat gcccgatgcg caagtttata gggcctataa
    13381 aggcaataaa tgtctgatgc gactctaacg cgtcttatca gacctacagc cgctgccaga
    13441 tgtgtgctgg ataaggcgtt cacgccgcat ccggcaagat ggcggtaacg actatccgcc
    13501 aggcttttag atcgccttaa tatccctgct cgaaatagct ttcgagaata ataaccgcag
    13561 aggcagagtc gactttgcct ttgttgagcg cccgatagcc gccctgttca aacagaccgg
    13621 aacgggcttc cacggtgcta agacgttcgt catggagctt tacttcaaca ccgaaacgac
    13681 catgaatacg gttggcaaat ttacgcgctc tggcagtcaa tggttgctcg gtgccgtcca
    13741 tattcagcgg caaaccgacg atgatttcgt ccggctgcca ctctttcagt aaacgttcga
    13801 tgaggttcca gtccggcgta ccgtcctgtg ctttaattgc aggcaaaggg cgagcagtgc
    13861 cggtaatgcg ttggccgacc gctacgccaa tgcttttggt gccgaagtcg aaggcgagta
    13921 aggttccact catcaggcgt gccctgccac accaggcatg gtgagaatat ccacaccaat
    13981 cagttttgcc gcctcgcgcc agcggtcggc aatcggcgtt ttgaacagaa tattcagatc
    14041 cgccgaggcc gttagccacg cgttatcgag aatttcttgt tccagttgac ctttttccca
    14101 ggaggcatag cccagagcca ccaatacgtc agacggttgt ttatcggtgc cgagcgtttc
    14161 cagcacatcg cgggaagtgg tcatcaccgt gttgtctgaa atgcgaatgc tggaagcaaa
    14221 attggagggc ggagtatgca aaataaaccc gcgatcttca gccagtgggc cgccgagcat
    14281 aaccggttta tccagacgga ttgattcatc acgcggctcc ggcgtgatct tcagcttttc
    14341 cagaatccct tcaattttga gattttccag cggcttgttg acgatgatcc ccattgcacc
    14401 attggtatta tgttcgcaaa tgtagaccac ggaacgacgg aaaatcggat cctggagagc
    14461 aggcatggca ataagaaagt gatgctgtaa attcattgtc agaggttctg tttcctggtt
    14521 caaaaaagca acagcgccca gtatgcgtgg aaagaagggc gctgtcactc agagtctcaa
    14581 cgagatcctt ctcgctaagg tgggttactg ctgctgtaaa cgtgcttcga tggcatccat
    14641 taacattccg gtgatcgaca ccggaaactc tgcttcaatc tcacgaatac aggttgggct
    14701 ggtgacgtta atttcagtca gacggtcgcc gatgatatcc agaccaacaa aaatcagccc
    14761 tttttctttc agcgtcggcc cgatctgacg ggcgattttc cagtcacttt ccgtcagcgg
    14821 ccgaggttca ccgcgaccac cggcagccag attgccacgg gtttcgcccc cctgcggaat
    14881 acgcgccagg cagtacggta ccggctcgcc atccaccacc agcacgcgtt tgtcgccatc
    14941 tttaatggct ggcaggtaat tttgcgccat gcagtagcga gtgccatgct cagtcagggt
    15001 ttcggcaatc acgccgaggt ttggatcgcc ttctttcacg cggaaaatcg acgcgccgcc
    15061 cataccgtcc agcggcttaa gaatgatgtc gctgtgtttc tcccagaacg cttttagctg
    15121 cgctttattg cgcgtaacca gcgtttctgg cgttaagtca gagaaccagg cggtaaacag
    15181 tttctcgtta cagtcgcgca ggctctgcgg cttgttaacg atcagcgtcc ctttctcttc
    15241 ggcacgttcc agaatatagg tcgcgtagat aaactcggta tcaaacggcg ggtctttacg
    15301 catcaggagc acatcgagat cggccagcgg cagatcctgt tcaccgacga acgaaaacca
    15361 ctcttcgtag ttctgcttca cgttcagcgt gcgggtatgg gcgcgagctt cgccattgat
    15421 cagatacaga tcgcccatct ccatatagtg aagttcgtaa ccacgacgct gtgcttccag
    15481 caacatagcg aaactggaat ctttcttgat gttgatgttt gcgatggggt ccatcacgat
    15541 gccgagcttg atcattattc ttctccgtta gcccaaatcg ccaaatcgta cttgtagcgc
    15601 ggtaatggcg gtgagcgcag ttgtctctgt acgcaaaacg cgaggtccca acaggatatc
    15661 agtaaattga tagcgggcag tcatggcaat ttcatctgcc gataaaccac cttccgggcc
    15721 aatcagcagg cggacgcgtt caaccggtaa cggcaacgta ttgatgctgt tactggcgcg
    15781 cgggtgaaga ttcagtttca gtccttcatc ctgctctgca caccaggctt ccagatccat
    15841 cgctggacgg atttccggca cccggttacg accacactgc tcacaggcag caattgcaat
    15901 cttctgccac tgctggagct tcttgttcag acgttcacta tccagtttaa cgccgcagcg
    15961 ctcagaaaaa agtggcgtaa tgaggcttac accgagttcg atcgatttct ggatcgtaaa
    16021 ttccattttt tcaccacgcg acatcacctg accgaggtga atatgcagcg gagattcgcg
    16081 atcgtcgatc ttgccttcca gcaccttcac ttccacgctt tttttgctgg cgctggtaat
    16141 ttcggcgtca aagacctggt tgctaccgtc aaacaattgc aacgcctgcc ccggccccat
    16201 gcgcagtacg cgcccgatat ggttggcggc atcttcgcaa agcgcgatgt gagaatggct
    16261 ggtcagtggt tcaggatgat aaatgcgggg gatacgcata gttaaaaatc cgcgtcgtct
    16321 ccccacgcgg ttgtacgcgt ggggtagggg ttaacaaaaa gagtcccgct agtgtaggtt
    16381 agctctttcg cgcctggcaa gcgcgttgca catacgggtt atgattgcct tgcaccttcg
    16441 cgatgcgttc atcgcgctcg cactcccagt cggtaaccgg atacatcttg ttccatgcgt
    16501 tgaacagctg cgtttgctgg cgagagagtg tcaggttgta ttggtcgcgc atatagaagt
    16561 aggtgcgcgc aatggcaccg cgtgcacgcg ctggtggttc ggcagctttt tctttgaaat
    16621 cgaccttcat ggcgcattga ccgtactggc cttcgccgcc attccactgg ctgtacataa
    16681 agttgccgcg atcgccattc acctcaccga ctgacggctg caggttatgc atatcgcttt
    16741 ccatcttgcg atagaccgga tctttagcgc agtttttacg tccaccgtcc tgccagcact
    16801 ggcgctggtg accgaactgc caggcgggaa cgacgtgttc ccactctacg cggctggctc
    16861 ggttttcatt tttgcgcacc tgatagccgc acgattgcag atcaacaacg ccttttttgc
    16921 cctgccagtt aattttacat ccgcaataaa acgtaccggg cgcgtcagcg tggactttta
    16981 ccgccgcggc tttcgcctga gaaaaactat tgataccttc ggccaacgcc gggccggaaa
    17041 atgctgcgct cagtaccacc gcagcaatag acaaataacg gtacatcact tactccgtgt
    17101 taaaacgagc cagcaacgta gcgaaagttg ttttggtatg caatcagcca gatcaggaaa
    17161 gttcctgata gttcagatgg ttattttgcg accagttgtt cgccgcagtg aacacagcga
    17221 tagacggctt cgccacgaac tacgcgatta tggcggcgta cggtaagctg atgctcctgg
    17281 cacttgcagc ggtaggggaa ggtgttgcga cgcacggatt gcagttcgaa ctgatgcgta
    17341 cgacgggcgg gaacacccag cacgttttcc atcatccact tccactcttt gccatgtggt
    17401 gctacgcgcc cgaaatgttt ccataccagc aaatgtgcca gttcgtgcgg caccacttct
    17461 tcaataaagg cttcactgtt ttccaacagc aaaacgggat tgaggcggat ttcatagctt
    17521 tccagccagg ctgttccggc ggaggtgccg cgctgggtat aagagagttt tggctccggg
    17581 tagttacgcc ccaatttcag gttagcctgg gcgagttttt cccgcaggcg acgcataacg
    17641 gcctgttgga tggcgatagg gagacgggat gttttcatag cggcagagga tagagcgaag
    17701 aaaagatgac tgcaagaggt ggcttcctcc gcgatgggag gaagcttggg gagattaatc
    17761 gtgagcgcct atttcgcgca gtttacgacc tttcatcaga ttacgttcaa tatgttccag
    17821 cgaaacgtgt ttggtttccg gtaccagcca caatgtcagc aggataaaca gtacgttcag
    17881 agccgcatac acccagaagg tgttggcgtt acccagtgtg ttgagcatgg tcaggaacgt
    17941 tgcgccaacg atcatgttgg caatccagtt ggtggcggta gagcaggtga tgccaaaatc
    18001 gcggcctttc agcggctgaa tttcggagca cagtacccaa atcagcggac cggcactcat
    18061 ggcaaaaccg acaataaaca tcagcagcat ggcgatggcg aaatactgcg ctgacggaga
    18121 gtgaataccg atatgcatca ttgtaccgag tacgcccatg ccagcagcca tcaccaggaa
    18181 gcccagcgtt agcgttggtt tacgtcccca gcggtcaaca aggccgattg cgataaaggt
    18241 ggcaagtacg ttggtcaggc cgacaatcac tgtcccccac atttgctcgg tagtgttggt
    18301 ataacccgcc agttcgaaga ttttcggcgc gtaatacatg atgacgttca tcccggtgaa
    18361 ttgctgcatt acctgtaaca gtacgccaag gaacaccgcg cggcggaagt tgctattctc
    18421 tttaaacagc gcccagccac tctgtttaac ctgcaaactt tcacggattt catccagttc
    18481 gcgtttcgct tccgcgctgg tgtcacgcag gcgtagcagc acgcgttcgg catcaacaaa
    18541 acggcgtttg gcggcaaacc aacgtgggct gtctggcagg aagaagacac caatcagcag
    18601 caaaattgcc gggatgataa tcacacccag catccagcgc catgcaccgg tgtagctgaa
    18661 ggcggtatca gaaagataag caccgaggat cccgatagtg atcatcaact gatacatcga
    18721 gatcatactg ccacgaattt tttccggcgc aatttcagag aggtacagcg gtgcggtata
    18781 agaggccaca cccaccgcca gccccagtag aacgcgggaa agaatcagta cttcaacgtt
    18841 tggcgcagcc gcagagaaca gcgaaccggc aacaaacaaa attgcgccga tcatcaggct
    18901 ctttttgcgc ccgagtttaa aggagagcca gccgctgccc accgcaccga ctgccgcacc
    18961 gaacatcatg gagcttacga cccattcttg cgtgtgcgaa gtaatctgga attcatctgc
    19021 aataaacggc agtgcgccag caattacacc gatatccagg ccaaagagta atcccgccag
    19081 agcggcaagg aagcagacga aaaacgtcat tgccttgttt gaccgcccct gttttttagc
    19141 gtcaggcatg atgccctcca atatggttat tttttattgt gaattaagat aggtgagtac
    19201 gacgtaaaaa gatgtgaagc aaatcacatc agtgtaatcg cttacactaa catttatctt
    19261 agttatggtt taagtgcatg aaaataattg agttatatca tcatagatta aacgctgtta
    19321 tctgcaatta agactttact gaaaagaaat gtaacaactg tgaaaactga ataataatat
    19381 gaaaatatta caaatatttg gctggtgtta ttggtgtaat cggtttcagt agtgatgata
    19441 atttgcgata aaacgtgttg aggaagaatg atgttattgt gcgggcagct ttttgccgga
    19501 tgcggcgtga atgcctatcc accgcggtga ggtaaaagaa aaaggccagc gcgaggctgg
    19561 cctttgaaag caggtgaaga aagattactt cagaccggca gcatcgcgca gcagctgcgc
    19621 tttgtcggtt ttttcccacg ggaaatgttc acgaccaaag tgaccgtatg ctgcggtttc
    19681 tttgtagatc gggtgcagca gatccagcat ctgaatcaga ccgtatgggc gcaggtcgaa
    19741 gaactcacgt accagcagag tcagttgttc agaaggcact ttctcagtac cgaaagtttc
    19801 taccatgatg gaggtcggtt cagccacgcc gattgcgtag gaaacctgaa tttcacaacg
    19861 atcggccagg ccagcagcaa cgatgttttt cgcgacataa cgtgctgcgt aggctgcgga
    19921 acggtccact tttgatggat ctttaccaga gaatgctccg ccaccgtgac gtgccatgcc
    19981 gccgtaggta tcaacgataa ttttacgacc agtcagaccg cagtcaccca tcgggccacc
    20041 gataacaaaa cgaccggtcg ggttgatgaa gaatgtggtg gcagaagtca gccattcagc
    20101 gggcagaatt ggcttgatga tctcttccat taccgcttct tgcagcgatt tctggtcgat
    20161 ctcttcagag tgctgagtgg aaagcacgac agcatcaata ccaacgattt tgccgtcgtc
    20221 atactggaaa gtcacctggc ttttcgcgtc cgggcgcagc cacggcagag tgccgttttt
    20281 acgcacttca gcctgacgct gtaccagacg gtgtgcatag gtgataggtg ctggcatcag
    20341 cacgtcggtt tcattagttg cgtagccaaa catcagaccc tggtcacccg cgccctgttc
    20401 cagcggatcg gcacggtcaa cgccctggtt gatgtcagga gactgtttgc cgatagcgct
    20461 cagaaccgca caggagttag cgtcaaagcc catgtcggaa tgcacatagc caatttcgcg
    20521 aacggtgtta cgagtgatct cttcgatgtc tacccaggcg ctggtggtga tttcgccgcc
    20581 aactaaaacc atgccggttt ttacgtaggt ttcgcaagca acgcgtgctt tcggatcctg
    20641 ttcgaggatc gcgtctaaaa cggcatcaga gatttggtca gcaattttgt caggatgccc
    20701 ttcagagacg gactcggacg taaaaaggtg ttttgccata tttaatatca cctaaagaga
    20761 atttggttag ctcaaactgt tgtgtggatt ttctgtggta gcggatccta ccacgactct
    20821 gcaggttaaa aacactggca gtctgagtgt taatcggtat ggatggatta acatctagat
    20881 ggctatttta ggtcaattct tcacccgatt tccacttttt tttgaatcgt gtctcattct
    20941 gttaaaaacg tggctggaaa ttttttctga caatgccggc attctgcgta tttatatttt
    21001 gcaattttct gccattgtgg ggtataaaac gcggcgcgcg gcttaaataa aaagcacacg
    21061 acgtttcttt cgtgttgcca cttccagccg ggttgaaatc agagttttgg cttgtgggtt
    21121 cgtcttaaca ggcggccgtg gaggtgatac gaaataatga accgtagtct gctgcttaac
    21181 ctgtctcacc gttctggtga agattcgttc cccgcactct gcatctctgc tttgcatacc
    21241 tgccgatgtt atacccatct cggcgcttct caggattcaa gagctggtta cagttactga
    21301 ggactgaaca agggcgctct tgtaaaaaca agagttttct cgtggtttcg ccgaactgtc
    21361 acacttacgt tcggttatgt gcttaataat gttatgaaaa agaaaccggt tgcgcagttg
    21421 gagcgtcagc attcactgct ggaaaatcca tgtgcttatg ggttgttatc gcagttccag
    21481 gctgcgatag tcgttaactg ttttacactt aataaaataa tttgaggttc gctatgtctg
    21541 acgacatgtc tatgggtttg ccttcgtcag cgggcgaaca cggtgtacta cgctccatgc
    21601 aggaggttgc aatgagctcc caggaagcca gcaagatgct gcgtacttac aatattgcct
    21661 ggtggggcaa taactactat gacgttaacg agctgggcca catcagcgtg tgcccggacc
    21721 cggacgtccc ggaagctcgc gtcgatctcg cgcagttagt gaaaactcgt gaagcacagg
    21781 gtcagcgtct gcctgcactg ttctgtttcc cacagatcct gcagcaccgt ttgcgttcca
    21841 ttaacgccgc gttcaaacgt gcgagggaat cctacggcta taacggcgat tacttccttg
    21901 tttatccgat caaagttaac cagcaccgcc gcgtgattga gtccctgatt cattcgggcg
    21961 aaccgctggg tctggaagcc ggttccaaag ccgagttgat ggcagtgctg gcacatgctg
    22021 gcatgacccg tagcgtcatc gtctgcaacg gttataaaga ccgcgaatat atccgcctgg
    22081 cattaattgg cgagaagatg gggcacaagg tctatctggt cattgagaag atgtcagaaa
    22141 tcgccattgt gctggatgaa gcagaacgtc tgaatgtcgt tcctcgtctg ggcgtgcgtg
    22201 cacgtctggc ttcgcagggc tcgggtaaat ggcagtcttc cggcggggaa aaatcgaagt
    22261 tcggcctggc tgcgactcag gtactgcaac tggttgaaac gctgcgtgaa gctgggcgtc
    22321 tcgacagcct gcaactactg cacttccacc tcggttcgca gatggcgaat attcgcgata
    22381 tcgccacggg cgttcgtgaa tccgcgcgtt tctatgtgga actgcacaag ctgggcgtca
    22441 atattcagtg cttcgacgtc ggcggcggtc tgggcgtgga ctatgaaggc acccgttcgc
    22501 agtctgactg ctccgtaaac tacggcctca atgaatatgc caacaacatc atctgggcga
    22561 ttggtgatgc gtgtgaagaa aacggtctgc cgcatccgac ggtaatcacc gaatcgggtc
    22621 gtgcggtgac tgcgcatcac accgtgctgg tgtctaatat catcggcgtg gaacgtaacg
    22681 aatacacggt gccgaccgcg cctgcagaag atgcgccgcg cgcgctgcaa agcatgtggg
    22741 aaacctggca ggagatgcac gaaccgggaa ctcgccgttc tctgcgtgaa tggttacacg
    22801 acagtcagat ggatctgcac gacattcata tcggctactc ttccggcacc tttagcctgc
    22861 aagaacgtgc atgggcagaa caactctatc tgagcatgtg ccatgaagtg cagaagcaac
    22921 tggatccgca aaaccgtgcg catcgtccga taatcgacga actgcaggaa cgtatggcgg
    22981 acaaaatgta cgtcaatttc tcgctgttcc agtcaatgcc ggacgcatgg gggatcgacc
    23041 agttgttccc ggttctgccg ctggaagggc tggatcaagt gccggaacgt cgcgctgtgc
    23101 tgctggatat tacctgtgac tctgacggtg ctatcgacca ctatattgat ggtgatggta
    23161 ttgccacgac aatgccaatg ccggagtacg atccagagaa tccgccgatg ctcggtttct
    23221 ttatggtcgg cgcatatcag gagatcctcg gcaacatgca caacctgttc ggtgataccg
    23281 aagcggttga cgtgttcgtc ttccctgacg gtagtgtaga agtggaactg tctgacgaag
    23341 gcgataccgt tgcggatatg ctgcaatatg tgcagctcga tccgaaaacg ctgttaactc
    23401 agttccgcga tcaagtgaag aaaaccgatc ttgatgctga actgcaacaa cagttccttg
    23461 aagagttcga ggcaggtttg tacggttata cttatctgga agatgagtaa gtccgtatta
    23521 cttgaatccg cttaatttag cggtgataat ccgccacaat ttattgtgac aaatccaacc
    23581 cttcctcgtc gggcctaacg acgcggaagg gtttttttat atcgactttg taataggagt
    23641 ccatccatga gcaccttagg tcatcaatac gataactcac tggtttccaa cgcctttggt
    23701 tttttacgcc tgccgatgaa cttccagccg tatgacagcg atgctgactg ggtgattact
    23761 ggtgtgccgt tcgatatggc cacttctggt cgtgcggggg gacgccacgg tccggcagcg
    23821 atccgtcagg tttcgacgaa tcttgcctgg gaacacaatc gcttcccgtg gaatttcgac
    23881 atgcgtgagc gcctgaacgt cgtggactgc ggcgatctgg tatatgcctt tggcgatgcc
    23941 cgtgagatga gcgaaaaact gcaggcacac gccgagaagc tgctggctgc cggtaagcgt
    24001 atgctctctt tcggtggtga tcactttgtt acgctgccgc tgctgcgtgc tcatgcgaag
    24061 catttcggca aaatggcgct ggtacacttt gacgcccaca ccgataccta cgcgaacggt
    24121 tgtgaatttg accacggcac catgttctat accgcgccga aagaaggtct gatcgacccg
    24181 aatcattccg tgcagattgg tattcgtacc gagtttgata aagacaacgg ttttaccgtg
    24241 ctggacgcct gccaggtgaa cgatcgcagc gtggatgacg ttatcgccca agtgaaacag
    24301 attgtgggtg atatgccggt ttacctgacc tttgatatcg actgcctaga tcctgctttc
    24361 gcgccgggaa ccggtacgcc agtgattggc ggcctgacct ccgatcgcgc cattaaactg
    24421 gtacgcggcc tgaaagatct caacattgtt gggatggacg tagtggaagt ggctccggca
    24481 tacgatcagt cggaaatcac cgctctggct gcggcgacgc tggcgctgga gatgctgtat
    24541 attcaggcgg cgaaaaaggg cgagtaagca ccagatgcga tgcgcacggg taaaacgtgc
    24601 cattaatgtc ggatgcggcg tgaacgcctt atccgaccta cgttcggcac ccgtaggccg
    24661 gataagatgc gccagcatcg catccggcaa tgcgcacaag gtaacaaatg tgccattaat
    24721 gtcagatgcg gcgtgaacgc cttatctgac ctacgttcga caccaccagg ctttacttaa
    24781 tcccatccgc gctcatgcga tcgcgaatat gctgggcgcg ttcggcggat gccggatggt
    24841 cgtcaaacat tgagctttgg cggccttctt ccagtttcgc cagtttttca aagctggtgg
    24901 caagacctgc cgggctgatg ccgcgttggc gcagaagatc gtaagaataa tcatcggctt
    24961 ctgcttcctg gcgctgggag aattgcgaat tgactaattt ctcgcccaga tcaccaagtt
    25021 gtgattgaga taaactgccg acaatcccgc ccgcagaggc cgcagctact cgcacggcat
    25081 ttgtaccaag cgccacctgc atccctttct tcacatggcc taacgccacg tgccccatct
    25141 cgtgaccgat caccgcttcg acttcgttat ccgtcatcat atccatcagc ccgctataga
    25201 cgcggataca gccgttagcc attgcaaagg cgttcacatc cttcgccata tacactttgt
    25261 aattcaccgg ctgaccgttg atattgttgc ctagcgcatt ggcaatagtt gtcagacgtt
    25321 tagcgtattc gctattggct ggcgcaatcg tcgccttgct gtccatctcc tgacatgcct
    25381 gatcgctcag ggttttcacc tgcgcatcac tcaaactgta agcctgaaaa gcttccgctc
    25441 ctgatgagag cagtccgttg gagtccatat tctggcaacc agtcagtacc gttgccacgc
    25501 tcattgctac caataaggcg cgaattttca tgttttctct tccgcacaag gtcaggatta
    25561 ttctaaaaat gcgccgtttg caggtgaatc gacgctcagt ctcagtataa ggaaaagcgc
    25621 agcggacggg cgagtagatt gcgcaacatg cgagcatgat ccagagattt ctgaagcggc
    25681 aaaaggatgt tccatgtaca tgacgcgcgg cttgcggtaa attgttggca aattttccgg
    25741 cgtagcccaa aacgcgctgt cgtcaagtcg ttaagggcgt gcccttcatc atccgatctg
    25801 gagtcaaaat gtcctcacgt aaagagcttg ccaatgctat tcgtgcgctg agcatggacg
    25861 cagtacagaa agccaaatcc ggtcacccgg gtgcccctat gggtatggct gacattgccg
    25921 aagtcctgtg gcgtgatttc ctgaaacaca acccgcagaa tccgtcctgg gctgaccgtg
    25981 accgcttcgt gctgtccaac ggccacggct ccatgctgat ctacagcctg ctgcacctca
    26041 ccggttacga tctgccgatg gaagaactga aaaacttccg tcagctgcac tctaaaactc
    26101 cgggccaccc ggaagtgggt tacaccgctg gtgtggaaac caccaccggt ccgctgggtc
    26161 agggtattgc caacgcagtc ggtatggcga ttgcagaaaa aacgctggcg gcgcagttta
    26221 accgtccggg ccacgacatt gtcgaccact acacctacgc cttcatgggc gacggctgca
    26281 tgatggaagg catctcccac gaagtttgct ctctggcggg tacgctgaag ctgggtaaac
    26341 tgattgcgtt ctacgatgac aacggtatct ctattgatgg tcacgttgaa ggctggttca
    26401 ccgacgacac cgcaatgcgt ttcgaagctt acggctggca cgttattcgc gacatcgacg
    26461 gtcatgacgc ggcatccatc aaacgcgcag tagaagaagc gcgcgcagtg actgacaaac
    26521 cgtccctgct gatgtgcaaa accatcatcg gtttcggttc cccgaacaaa gccggtactc
    26581 acgactccca cggtgcgccg ctgggcgacg ctgaaattgc cctgacccgc gaacagctgg
    26641 gctggaaata tgcaccgttc gaaatcccgt ctgaaatcta tgctcagtgg gatgcgaaag
    26701 aagcaggcca ggcgaaagaa tccgcatgga acgagaaatt cgctgcttac gcgaaagctt
    26761 atccgcagga agccgctgaa tttacccgcc gtatgaaagg cgaaatgccg tctgacttcg
    26821 acgcgaaagc aaaagagttc attgctaaac tgcaggctaa cccggcgaaa atcgccagcc
    26881 gtaaagcgtc tcagaatgct atcgaagctt tcggtccgct gttgccggaa ttcctcggcg
    26941 gttctgctga cctggcaccg tctaacctga ccctgtggtc tggttctaaa gcaatcaacg
    27001 aagatgctgc gggtaactac atccactacg gtgttcgcga gttcggtatg accgcgattg
    27061 ctaacggtat ctccctgcac ggtggtttcc tgccgtacac ctccaccttc ctgatgttcg
    27121 tggaatacgc acgtaacgcc gtacgtatgg ctgcgctgat gaaacagcgt caggtgatgg
    27181 tttacaccca cgactccatc ggtctgggcg aagatggccc gactcaccag ccggtagagc
    27241 aggtcgcttc tctgcgcgta accccgaaca tgtctacatg gcgtccgtgt gaccaggttg
    27301 aatccgcggt cgcgtggaaa tacggtgttg agcgtcagga cggcccgacc gcactgatcc
    27361 tctcccgtca gaacctggcg cagcaggaac gaactgaaga gcaactggca aacatcgcgc
    27421 gcggtggtta tgtgctgaaa gactgcgccg gtcagccgga actgattttc atcgctaccg
    27481 gttcagaagt tgaactggct gttgctgcct acgaaaaact gactgccgaa ggcgtgaaag
    27541 cgcgcgtggt gtccatgccg tctaccgacg catttgacaa gcaggatgct gcttaccgtg
    27601 aatccgtact gccgaaagcg gttactgcac gcgttgcggt agaagcgggt attgctgact
    27661 actggtacaa gtatgttggc ctgaatggcg ctatcatcgg tatgaccacc ttcggtgagt
    27721 cagctccggc agagttgctg ttcgaagagt tcggcttcac cgtcgacaac gtcgttgcga
    27781 aagcaaaaga actgctgtaa ttagcatttc gggtaaaaag gtcgcttcgg cgaccttttt
    27841 tattaccttg atatgtccgt ttgcggacaa gcaatagata aagcgtgttg cagatcacaa
    27901 atatttatat gcaataaata tcaattatgt aatatgcatc acgatatgcg tattgacatt
    27961 tgttgttata tctataactc aatgttatat aagaaattaa taattcactg ttttcaaaac
    28021 accggtttcc ctgctcaatt gctttcatta aaccgcacga gtattttatt tttaccgccg
    28081 gacggtaccc taaaaataaa ataaggataa tttatgcggc ttagtgacta ttttccagaa
    28141 tcatcaatct cagttataca ttcagcaaaa gattggcagg aagctatcga tttctcgatg
    28201 gtatcattgc tggataaaaa ctatatcagc gagaattaca ttcaggcaat taaagattcc
    28261 accattaaca atggccctta ttatattctc gcaccaggcg tggcaatgcc tcatgcgcga
    28321 ccggaatgtg gggcgcttaa aaccgggatg tctttgacat tacttgaaca aggtgtttat
    28381 tttccgggga atgacgaacc aattaaatta ctcatcggac tctctgctgc cgatgccgat
    28441 tcgcacattg gcgctattca ggcgttaagt gaattactgt gcgaagaaga aatactcgaa
    28501 caactcttaa cagcatcatc agaaaaacaa ttagcggaca ttatcagcca cagataatta
    28561 ctctctcctc tacaggataa tattatggaa aacaagtctg ctcgtgcaaa ggtccaggct
    28621 tttgggggct ttttgactgc aatggtcatc cccaatattg gtgcttttat tgcctggggt
    28681 tttattactg cgttatttat tcccaccggt tggctgccta acgaacattt cgccaaaatt
    28741 gtcggcccga tgattaccta tttattgccc gtgatgattg gttctacagg tggtcatctg
    28801 gtcggcggta aacgcggggc ggtcatgggc ggaataggta ctattggtgt gatcgttggc
    28861 gcagagatcc cgatgttcct tggctcaatg atcatggggc cgctcggtgg gttggtcata
    28921 aaatatgtcg ataaggcact ggaaaaacgc atacctgccg gttttgagat ggttatcaat
    28981 aacttctcat taggtatcgc ggggatgctc ctttgtctgc tgggttttga agtgatcggc
    29041 ccggcggtgt taattgccaa tactttcgtc aaagagtgta tcgaggcgct ggtacatgcg
    29101 ggttatctgc ctctgctgtc agtcatcaat gaaccggcga aagtgctttt ccttaataat
    29161 gcgatcgatc agggcgtcta ttatccgctg ggaatgcaac aggcttcggt taacggtaaa
    29221 tccatcttct ttatggtggc ctctaaccca ggtccgggcc tggggctgct gctggcgttt
    29281 accttgtttg gtaaagggat gagtaaacgt tctgcgcccg gggcgatgat tattcacttc
    29341 ctcggtggga tccacgaact gtatttccca tatgtgctga tgaagccgct gactattatt
    29401 gccatgattg cgggcggtat gtctggtacc tggatgttta acttactgga cggtggtctg
    29461 gtggctggcc caagtctggg gtctatcttt gcttacctgg cactgacgcc gaaaggctcg
    29521 ttcctggcga caattgccgg tgttacggta ggtaccctgg tgtcctttgc tattacttcg
    29581 ctgatactga agatggaaaa aacggtggaa acggagagcg aagatgagtt tgctcagtca
    29641 accaatgcgg ttaaggcgat gaaacaagag ggtgcattct cgttaagcag ggttaagcgt
    29701 atcgcctttg tttgcgatac ggggatgggc tccagtgcga tgggcgcgac caccttccgt
    29761 aaacgcctgg aaaaagcggg gctggcaata gaagtaaaac attacgcgat agaaaacgtg
    29821 cctgcggatg ccgatatcgt cgtcactcac gccagtctgg aagggcgcgt gaaacgtgtg
    29881 acggataaac cgctgatatt gattaataac tatattggcg atccaaaact cgacacttta
    29941 tttaatcaat taaccgccga acataaacac tgattacaga ggtaaaaatg aaaaccaaag
    30001 ttgctgctat ttatggcaag cgggatgtcc gtctgcgcga atttgaactg ccagaaatta
    30061 ccgataatga actgttagtg agtgtaattt ctgacagcgt ctgtttatcg acctggaaag
    30121 cggcgttact cggtagtgaa cataaacgcg tacccgacga tttagaaaat catccggtca
    30181 ttaccgggca tgaatgtgcc ggggttattg tcgaagtggg taaaaatctc actggcaaat
    30241 ataaaaaagg ccagcgtttt gtattgcaac cggcgatggg gttaccaagc ggatattcag
    30301 caggctacag ctacgaatat tttggcggta acgccaccta tatgattatt cccgaaatcg
    30361 ccattaattt gggctgcgta ttaccgtatc acggctctta ttttgctgcg gcgtcgctgg
    30421 tagagcctat gtgctgcatt attggtgctt atcatgccaa ttatcacacc acgcaatatg
    30481 tttatgagca tcgcatgggc gtcaaacctg gcggcaatat tgcactgctg gcgtgtgcgg
    30541 gtccgatggg cattggcgct atcgattacg ccattaacgg tggcatacaa ccgtcacggg
    30601 tggtggtggt cgatatcgac gacaaacgcc tggcgcaggt gcagaagctg ctgccggtgg
    30661 atctggcggc cagtaaaggc attgagctgg tgtatgtgaa taccaaaggg atgagcgatc
    30721 cggtccagac gctgcgggcg ctgacaggag atgtcgggtt cgatgacatt tttgtttatg
    30781 cggcggtgcc tgctgtcgtt gagatggctg acgaattact ggcggaagat ggctgtctga
    30841 acttctttgc cgggccgacg gataaaaact tcaaagtgcc gtttaatttc tacaacgtcc
    30901 attacaacag cacgcacgta gtcggtacat ccggcggttc aacggacgac atgaaagagg
    30961 cgattgcgtt aagcgccacg gggcagttgc agccgtcctt tatggtcacg catatcggtg
    31021 ggctggatgc ggtgccagat accgtgctca atctgccgga tatccctggc ggtaaaaaac
    31081 tcatttataa cggcgtgacc atgccgctca ctgccattgc cgattttgcc gaaaaaggca
    31141 aaaccgatcc gctatttaaa gagttggcgc ggctggttga ggaaacgcac ggcatctgga
    31201 atgaacaggc cgagaaatat ctgctggcac aatttggcat tgatatcggg gaggccgcgc
    31261 aatgatgtcc ctggcgtggc cattatttcg cgttacggaa caggcagcgt tagctgcctg
    31321 gccgcaaacc ggatgtggcg acaaaaataa aattgatggc ctggcggtca ccgcgatgcg
    31381 ccaggcatta aacgacgtcg cttttcgtgg acgagtggtt atcggcgaag gagaaattga
    31441 ccatgcgccg atgctgtgga ttggcgaaga ggtgggcaaa ggcgatgggc cagaagtcga
    31501 tatcgcggtt gatcccattg aaggcacgcg gatggtggcg atggggcaga gcaatgcgct
    31561 ggcggtcatg gctttcgccc ctcgggatag cctgttacat gcgcccgata tgtatatgaa
    31621 aaagctggtt gttaatcgac tggctgccgg ggtgattgat ctgtctttgc ctctggcgga
    31681 caacttgcgt aacgtggcgc gggcgttagg taaaccgctg gacaagctgc gcatggttac
    31741 gctggataaa ccgcgcctga gtgccgcgat tgaggaagca acacagctgg gcgtgaaggt
    31801 ttttgccctg ccggatggcg atgtcgccgc cagcgtgctg acctgctggc aggataatcc
    31861 ttacgatgtg atgtacacca tcggcggtgc gccagaaggc gtgatttctg cctgtgccgt
    31921 taaagcatta ggcggggata tgcaggccga gctgattgac ttttgtcagg ctaaagggga
    31981 ttacacggaa aatcggcaga ttgcagagca ggagagcaag cgttgcaagg caatgggcgt
    32041 tgacgttaac cgtgtgtact cgctcgatga actggtgagg gggaacgata tcctctttag
    32101 cgctacgggc gtgacgggcg gcgagttggt gaacggtatc caacagacgg cgaatggggt
    32161 gcggacgcag acattactga tcggcggcgc ggaccaaacg tgtaatataa tagactccct
    32221 gcattgatgg tgatctatcg gaagaccaat ggcgaagctg acagaagatg atgtgcttga
    32281 gcaactggat gcacaggaca atttattttc atttatgaaa actgcgcatt ctattttgct
    32341 ccaggggata cgccagtttc tgccgtcgct gtttgtcgat aacgatgaag agatcgtgga
    32401 atatgcagtg aagccgttac tcgcccaaag cggcccgctt gacgatattg atgttgcgct
    32461 gcgtttgatt tatgcgctgg ggaaaatgga taaatggctg tacgccgata tcacgcattt
    32521 ttcccagttc tggcattacc tgaacgaaca ggatgaaacg cccggatttg ccgatgacat
    32581 gacctgggat tttatcagca acgtcaatag cataacccgc aatgcgatgc tctatgacgc
    32641 gttgaaagcg atgaagttcg ccgatttcgc cgtctggtca gaggcgcgtt ttagcgggat
    32701 ggtcaaaacg gcgctgacgc tggcagtaac gacaatctta aaggaattaa cgccgtgaaa
    32761 attgaattaa cggtgaatgg gctgaagata caggcacagt accagaacga agagattgaa
    32821 aatgtacata aaccgttgct gcgtatgctg gcggccttac agacggtaaa tccgcagcgg
    32881 cgtacggtgg tttttctttg cgctccgccg gggacgggta aatctaccct aaccaccttc
    32941 tgggaatatc tcgcgcaaca agacccggag ctgcccgcta ttcagacgct cccgatggat
    33001 ggttttcacc attacaatag ctggctggac gcgcatcaat tgcgcccctt caaaggcgca
    33061 ccagagacat ttgacgttgc gaaactggcg gaaaatctgc gccaggtggt ggaaggggat
    33121 tgtacgtggc cgcagtacga tcgacaaaag catgatcctg ttgaagatgc gttgcacgtt
    33181 accgcaccac tcgtcatcgt cgaaggaaac tggttgttgc tggacgacga gaagtggtgc
    33241 cagcttgcgc aattttgtga tttctcgatc tttatcaacg cgccagctac tgcgttgcgg
    33301 gagcgtctgg tggggcgcaa gctggcggga ggggtatcgc tggcagatgc agaaaccttt
    33361 tatgaccgta ccgacgggcc gaatgttcgc cgggtgctgg aagagagtct gcctgcaaat
    33421 ttgaccttaa tgatgaccgc tacgggtgaa tatcgtctgg tggattaacg ttcctgatta
    33481 caccatcttc cagtcgcacc acacgagaga aatgacgccg ggtaaatgcg gcgtcatgac
    33541 tgattgctac cacgctcgtg cctcgctggc ggcacttctc cagccagctt tcaaacacgc
    33601 tcaaccaatt ttcgtcaaaa tcccgactcg gctcgtccag cagtaatagt ggcggagaga
    33661 gtgcttccag gcaggcgacg gcgaccatcc gtcgctgcgc actatgcaga tccaacgggt
    33721 gcgagttggc agtgtctgct aactgacaac attgcagggc agcatgggta cgttgagtga
    33781 tttcatccgc cgggcatttt tgcagtttca aaccaaatgc gatctcgtca gcgacggtgc
    33841 tgtgaaaaag ttggttttcc gcttcctgaa acagtacgcc aacctttgcc gcgcgctggc
    33901 ggtttttcag gtttttcatc gcctgttgtt gcagcataac cgtaccggct gtgggcgtaa
    33961 gaagacctgc cattactcgt aacagcgtcg atttccctgc gccattgtca ccggtcagcg
    34021 ccaaccattc accttgtttg agttgcagag aaatgtcgca aagacaatcc gttgccgcgc
    34081 caggccagcg ataagatatc tgatttaacg ttaacatagt ggctggagcg ctccgttttg
    34141 caattgccac gcttgctggc agtagttcag gaaaggtgtg cgatgacgtt caaaaagaat
    34201 aatcagcgaa ccacgttcaa acgcccagtg ttgtaagcgc tgcaacagca tttcgctggc
    34261 ctgcggcgtc aggcggctaa aggcttcatc aagaattaag agctttggct gcatcgcgat
    34321 ggcgcaggcg atgaccacgc gctgtgtctc tccaccggag agtgttgccg ggtgacgatg
    34381 gcgcaacggc tggcactcgg tcagagtcag ggcggcatca atccgcgcca taatctctgc
    34441 ttcagcaaga cacagatttt ctggcccaaa ggcaacttct tcttccacgc taaaggtaca
    34501 gccggagagc tgcaaatagg gcgattgctg gacgagctgg atggtggcgg attgttcatt
    34561 aagcgggaga tgcccaatgg gcgtaccgag gagcgtcccc gtgcctgtta tctctcctgg
    34621 cagaaagtcc ggataccagc ccgccatcag ctgtgccagc gtacttttgc cactgccgtt
    34681 gtcaccaaag atggcgacca tccccggttt gacatagtga aagtcataac agaacggagg
    34741 atgcgttgag tgtgtcgggc aataacggaa ctgttctaac gtaaccatat ccacgctccg
    34801 aattctgtca gcatcagcaa gatcatggtg taacgcgcta cgcgttgtag ggtgctatcg
    34861 gctggtgccc acaacgttgt tcgtcggttg tggatccgaa atgcccgcat atccagcgcc
    34921 gcacctcgga cagccagatc gttaagcgca ttgtgtgtta gcggaataat taacgcgggc
    34981 atcgcacgta aacgctgata ccagccctca tccagcggca cgccgcgggc acgctgcgct
    35041 tcatgaataa tcgctaattg ccgttttaac tgctcaacga ccaataacgg cccggcaaac
    35101 agataagcga cgcctggcgg caggcgagaa gcaaacagag cgcgaataaa acattgcacg
    35161 gggacgtact gcatccacaa ctgtgaggtt gaaacaatca ccagaatccg caaccagagc
    35221 gtaatagcat gcgaccaccg ttctggcgag cgtggcgtgc cgcttagcca ttctggtagc
    35281 cagccaccgt gtaccagcca cagcccggct cccagcgaga acatcagcca gacgacatat
    35341 tttgcccgcc gccgcgtggc ctttagcgca ataaggcaga aaaaggtcgc cgcgctatag
    35401 atcggcaaaa tggtctgcgc gggcaggata agcgtggtgc aggccgccaa tgcccacagt
    35461 gttaatgagg taaatggatg catttagcgc acggcagcca ttgccggaaa atggcgcgtg
    35521 gtgcgaatcg gcagctggcg cagtaaaagc cagacaatca ccgctgtaag aattttatcg
    35581 accaggttcg cgcctatcac cgtaatcgcc accgactcca ccaggttttg ccccatcgag
    35641 tgcatccagg caacgaacaa atcggctccg ctaccggtga caccgccgaa cagcgcagta
    35701 cgcagcggta cagcgacgac cgttaccgca agcgtaataa tcacgccgct gacaacgact
    35761 tttggcaggg tgcgaaacca acccgctcgc gccagccaac cggcgaccag gccgatgacc
    35821 atcgcgacgg gtgcaaatgc ggcggcgatc gggtcggtca gcaatcccca gagtaaattg
    35881 gtcagtaagc cggtcagcat tccgatcacc ggaccaagca gtaccgcgct aataagtgtg
    35941 ccgatggagt cgagaaatat aggtaatttg accatgctgg ccagttgccc gccgatcata
    36001 ttgatggcga tagatataac gatcaacacc agtgcctgac tggaaaagtg gctacgcgcc
    36061 ataagaaaac ctctttgaaa gtagttattt aacgggggaa atatgcaact cgtcgtaacc
    36121 agaaagcgcg caaggttggc ggctaaacgc cagttcctca aggctaccga tcaccagttc
    36181 aagcgtggtc cgcacggtac agccgggcat catatgaccg ccaagcatcg tgccgtgtgg
    36241 atcggaaacg cagagatgaa gatgctcacc actctgttcc agcgtgccgt ttagtgagat
    36301 cacttcgaat gtaccgttca ggagcgtggt gccttcttgc ctggcatagc gcaaggcgac
    36361 gtcagtcagg ctaccggtac agcctgcaat ccaggcggca tgaagttgat gctgctgtgc
    36421 aaaagcgtgt agctgggaaa aaacttcctg cccggggagg aggcgcagtg cgtaaaagcg
    36481 tgcggaggaa gaatatgggt agggcaatgt catcattgga gtactccgaa actcggacgt
    36541 attgcggata atatcgacgc tgcatcagtc atattctgat ataagtcagg gtttgtgacg
    36601 gcacaacgaa aagattttgc tacgcttatt cgtgattctg caaagtggaa taaattctac
    36661 aggggcgggg ctgaaaacgt gacgtaagtc agataattgc tttctttgac tggacaatca
    36721 ttccttttat tccacgtttc gcttatccta gctgaagcgt ttcagtcgat taaatgttcg
    36781 acaattaacc aatcagtcgc agtttgcgac aggtaaggtt tccccggacg atttgctgga
    36841 ttactctgtc tggcaaattt gctcagggaa aaccttgcag gagatctatg accgtacgcg
    36901 tagcgataaa tggcttcggt cgcatcgggc gtaatgtggt tcgtgctttg tatgaatccg
    36961 gacgccgggc ggaaattacc gtggtggcaa tcaacgaact ggcggatgct gcgggcatgg
    37021 cgcatttgtt gaaatatgac accagccatg gccgttttgc atgggaagta cgacaggaac
    37081 gcgatcaact ttttgttggt gatgacgcca tccgcgtatt gcatgaacgt tcactgcaat
    37141 cgctcccctg gcgtgaactt ggcgttgatg tagtcctcga ctgcaccggc gtatatggct
    37201 cccgcgagca tggcgaagcg catattgccg ccggggccaa aaaagtgctc ttttcacatc
    37261 ctggcagtaa cgatctcgac gcgaccgttg tttacggcgt caatcaggat caacttcgtg
    37321 cggaacaccg catcgtttct aacgcttcct gtaccacgaa ttgcataatt cccgtcatca
    37381 aattgttaga tgatgcgtac ggtattgagt ccggcactgt gaccacaatt cactccgcca
    37441 tgcacgatca acaggttatt gatgcatacc atcctgacct gcgtcgcacc cgggcagcca
    37501 gccagtcgat cattccggtc gatactaaac tggccgccgg tatcacacga ttttttccgc
    37561 aatttaacga tcgctttgaa gcgattgcgg tacgtgtgcc aaccataaat gtgacggcaa
    37621 tcgatttaag cgtgacggtg aagaaacctg taaaagccaa tgaagtcaac ctgttgctgc
    37681 aaaaagcagc acaaggtgca tttcatggta tagttgacta tacggaattg ccgttggtct
    37741 ctgtagattt taaccacgat ccgcacagtg ccattgtcga tggcacccaa acccgggtca
    37801 gtggcgcaca cctgatcaaa acgttggtct ggtgcgataa cgaatggggc tttgctaacc
    37861 gaatgctcga cacgacgtta gctatggcta ctgttgcttt caggtaagac gcaagcagcg
    37921 tctgcaaaac ttttagaatc aacgagagga ttcaccatgt ctgtaattaa gatgaccgat
    37981 ctggatcttg ctgggaaacg tgtatttatc cgtgcggatc tgaacgtacc agtaaaagac
    38041 gggaaagtaa ccagcgacgc gcgtatccgt gcttctctgc cgaccatcga actggccctg
    38101 aaacaaggcg caaaagtgat ggtaacttcc cacctgggtc gtcctaccga aggcgagtac
    38161 aacgaagaat tctctctgct gccggttgtt aactacctga aagacaaact gtctaacccg
    38221 gttcgtctgg ttaaagatta cctcgacggc gttgacgttg ctgaaggtga actggttgtt
    38281 ctggaaaacg ttcgcttcaa caaaggcgag aagaaagacg acgaaaccct gtccaaaaaa
    38341 tacgctgcac tgtgtgacgt gttcgtaatg gacgcattcg gtactgctca ccgcgcgcag
    38401 gcttctactc acggtatcgg taaattcgct gacgttgcgt gcgcaggccc gctgctggca
    38461 gctgaactgg acgcgctggg taaagcactg aaagaacctg ctcgcccgat ggtggctatc
    38521 gttggtggtt ctaaagtatc taccaaactg accgttttgg actccctgtc taaaatcgct
    38581 gaccagctga ttgttggtgg tggtatcgct aacaccttta tcgcggcaca aggccacgat
    38641 gtgggtaaat ccctgtacga agctgacctg gttgacgaag ctaaacgtct gctgaccacc
    38701 tgcaacatcc cggttccgtc tgatgttcgc gtagcaaccg agttctctga aactgcaccg
    38761 gctaccctga aatctgttaa cgatgtgaaa gctgacgagc agatcctgga tatcggtgat
    38821 gcttccgctc aggaactggc tgaaatcctg aagaatgcga aaaccattct gtggaacggt
    38881 ccggttggcg tgttcgaatt cccgaacttc cgcaaaggta ctgaaatcgt ggctaacgct
    38941 atcgcagaca gcgaagcgtt ctccatcgct ggcggcggcg acactctggc agcaatcgac
    39001 ctgttcggca ttgctgacaa aatctcctac atctccactg gcggcggcgc attcctcgaa
    39061 ttcgtggaag gtaaagtact gcctgcagta gcgatgctcg aagagcgcgc taagaagtaa
    39121 aaaatcacag ggcagggaaa cctgcccttg tttcagcgcg cttttagagc acgcattttt
    39181 tcatactcta aataattcga gttgcaggaa ggcgacaaga gagtgaatcc ccaggagctt
    39241 acataagtaa gtgactgggg tgagcgaacg cagacgcagc acatgcaact tgaagtatga
    39301 tgagtataag gcccgacgat acaggacaag agacatgtct aagatttttg atttcgtaaa
    39361 acctggcgta atcactggtg atgacgtaca gaaagttttc caggtagcaa aagaaaacaa
    39421 cttcgcactg ccagcagtaa actgcgtcgg tactgactcc atcaacgccg tactggaaac
    39481 tgctgctaaa gttaaagcgc cggttatcgt tcagttctcc aacggtggtg cttcctttat
    39541 cgctggtaaa ggcgtgaaat ctgacgttcc gcagggtgct gctatcctgg gcgcgatctc
    39601 tggtgcgcat cacgttcacc agatggctga acattatggt gttccggtta tcctgcacac
    39661 tgaccactgc gcgaagaaac tgctgccgtg gatcgacggt ctgctggacg cgggtgaaaa
    39721 acacttcgca gctaccggta agccgctgtt ctcttctcac atgatcgacc tgtctgaaga
    39781 atctctgcaa gagaacatcg aaatctgctc taaatacctg gagcgtatgt ccaaaatcgg
    39841 catgactctg gaaatcgaac tgggttgcac cggtggtgaa gaagacggcg tggacaacag
    39901 ccacatggac gcttctgcac tgtacaccca gccggaagac gttgattacg catacaccga
    39961 gctgagcaaa atcagcccgc gtttcaccat cgctgcgtcc ttcggtaacg tacacggtgt
    40021 ttacaagccg ggtaacgtgg ttctgactcc gaccatcctg cgtgattctc aggaatatgt
    40081 ttctaagaaa cacaacctgc cgcacaacag cctgagcttc gtattccacg gtggttccgg
    40141 ttctactgct caggaaatca aagactccgt aagctacggc gtagtgaaaa tgaacatcga
    40201 taccgatacc caatgggcaa cctgggaagg cgttctgaac tactacaaag cgaacgaagc
    40261 ttatctgcag ggtcagctgg gtaacccgaa aggcgaagat cagccgaaca agaaatacta
    40321 cgatccgcgc gtatggctgc gtgccggtca gacttcgatg atcgctcgtc tggaaaaagc
    40381 attccaggaa ctgaacgcga tcgacgttct gtaagatatt cctttctgct tatctcaagg
    40441 cccgctctgc gggtcttttt ttcgccaaaa gcaaaattgc ctgatgcgct acgcttatca
    40501 ggcctacacg tatcctgcaa tatattgaat ttgcaggttt ttgtaggccg gataaggcgt
    40561 tcacgccgca tccggcatga caaagcgcac attgatatct gtctgagccc cgctctgcgg
    40621 ggattttttc gccaaaagca aggtgattca gatgagaaat ctgtgaccta tttggcaaaa
    40681 ttatgcttta ttgtttaccc ttgtcagact gcccgtcata aggcggcgga gtgtatttct
    40741 ccattttgag tcagttgaaa aggaatattg aatggaagat ttgaatgttg tcgatagcat
    40801 aaacggcgcg ggaagctggc tggtagctaa ccaggcgctg ctgctaagtt atgcagtaaa
    40861 catcgtggcg gcactcgcga tcatcatcgt tggtttgatt atcgcgcgga tgatttccaa
    40921 cgcggtgaat cgcctgatga tctcccgtaa aatcgatgcc actgttgctg attttctttc
    40981 tgcattagtc cgttacggta ttatcgcctt tacgctaatc gctgccctgg gacgcgtggg
    41041 tgtacaaaca gcgtcagtca ttgctgtact cggtgccgca ggcttagctg ttggtctggc
    41101 tttgcagggg tcactttcta acctggccgc tggcgtgtta cttgtcatgt tccgaccgtt
    41161 ccgtgccgga gaatatgttg acctcggcgg cgtagccggt actgtgctga gtgtgcagat
    41221 tttctccacc accatgcgta ctgcagacgg taaaattatc gttattccga acggtaaaat
    41281 tattgccgga aatattatta acttctcccg cgagccagtt cgccgtaacg aatttattat
    41341 tggcgtggcg tatgattccg atatcgatca ggttaagcag atcctgacca atattatcca
    41401 gtctgaagat cgcattttga aagatcgcga aatgactgtg cgcctgaacg aacttggtgc
    41461 atcgtcgatt aatttcgtgg tccgcgtctg gagcaacagc ggcgatctgc aaaacgtgta
    41521 ctgggatgtg ctggagcgta ttaaacgtga atttgatgcc gccggtatca gcttcccgta
    41581 cccgcaaatg gatgtgaact ttaagcgggt gaaagaagac aaagctgcgt aatcaacgct
    41641 gaggccagat aatactctct ggcctctctc ttattagtta ttctgattgc caattaatat
    41701 tatcaatttc cgctaataac aatcccgcga tatagtctct gcatcagata cttaattcgg
    41761 aatatccaac gtgttttctt attactttca aggtcttgat cttggggcag ctatgattct
    41821 gccgctcggc ccacaaaatg cttttgtgat gaatcagggc attcgtcgtc agtaccacat
    41881 tatgattgcc ttactttgcg ctatcagcga tttggtcctg atttgcgcgg ggatttttgg
    41941 tggtagcgcg ttattgatgc agtcgccgtg gttgctggcg ctggtcacct ggggcggcgt
    42001 agtcttcttg ctctggtatg gttttggcgc ttttaaaaca gcgatgagta gtaatattga
    42061 gttagctagt gccgaagtcc tgaagcaagg cagatggaaa attatcgcca ccatgttggc
    42121 agtgacctgg ctgaatccgc atgtttacct ggatactttt gttgtactgg gcagccttgg
    42181 cgggcagctt gacgtcgaac caaaacgttg gtttgcgctc gggacaatta gcgcctcttt
    42241 cctgtggttc tttggtctgg ctattctcgc agcctggctg gcaccgcgcc tgcgcacggc
    42301 aaaatcacag cgcattatca atctggtagt gggatgtgtc atgtggttta tagccttgca
    42361 gctggcgaga gacggtattg ctcatgcaca agccttgttc agttaggcgc tatctgatgg
    42421 aaaaataaaa cagaggcgct aagcttgcct ccagaggtcc tgaattttgg gcaagtcaat
    42481 taacacggag agactaacgt gaagttcaaa gttatcgccc tagcggcatt aatgggtatt
    42541 agcgggatgg cagcgcaggc taacgaattg ccggatggac cgcatattgt cacctccggt
    42601 acggcaagtg tggatgcggt gccagacatt gccactcttg cgattgaagt taacgtggcc
    42661 gcgaaggatg ccgctacagc caagaaacag gcagatgagc gcgtcgcaca atacatttcc
    42721 ttccttgaac tcaatcagat cgcgaaaaaa gatatcagct cagcgaattt acgcacccag
    42781 ccagattatg attatcagga tggtaaaagt atcctgaaag gctaccgcgc tgtgagaacg
    42841 gtggaagtca cgctccgtca gttagacaaa ctgaattcct tgctggatgg cgcgctgaag
    42901 gcgggtctta acgaaattcg ttcagtgtcg ctgggcgtgg cgcagccgga tgcctataaa
    42961 gacaaagcgc gtaaggcagc gattgataac gcgattcatc aggcgcagga actggcgaac
    43021 ggctttcatc gtaaactggg gccggtatat agcgtgcgct accatgtttc caactatcag
    43081 cccagcccaa tggtgcggat gatgaaagcc gatgccgcgc cggtgtctgc ccaggaaact
    43141 tacgagcagg ccgctattca gtttgatgat caggtcgatg tggtcttcca gttagaacct
    43201 gtggatcaac aacccgctaa aacacctgca gcacaataat acttgtagcc cgacgtattc
    43261 gtcgggctaa tgcctttacc cgatattgcc tcctttttct gtaattttct gtaaaaccat
    43321 gacgtaatca cctatctttg ctcgcggttt catcaaggat aggctgactg aaacggttaa
    43381 gcggacaagg atgcgggg
//
LOCUS       DAJVSY010000010        42371 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.010, whole genome shotgun sequence.
ACCESSION   DAJVSY010000010 DAJVSY010000000
VERSION     DAJVSY010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 42371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42371
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.010"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            100..639
                     /locus_tag="OQQ19_000542"
     CDS             100..639
                     /locus_tag="OQQ19_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5384 family protein"
                     /protein_id="HCS1802287.1"
                     /translation="MKKVFLCAILASLSYPAIASSLQDQLSAVAEAEQQGKNEEQRQH
                     DEWVAERNREIQQEKQRRANAQVAANKRAATAAANKKARQDKLDAEASADKKRDQSYE
                     DELRSLEIQKQKLALAKEEARVKRENEFIDQELKHKAAQTDVVQSEADANRNMTEGGR
                     DLMKSVGKAEENKSDSWFN"
     gene            complement(734..2311)
                     /gene="guaA"
                     /locus_tag="OQQ19_000543"
     CDS             complement(734..2311)
                     /gene="guaA"
                     /locus_tag="OQQ19_000543"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HCS1802288.1"
                     /translation="MTENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEA
                     QIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEA
                     SNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFVTVAST
                     ESCPFAIMANEEKRFYGVQFHPEVTHTRQGMHMLERFVRDICQCEALWTPAKIIDDAV
                     ARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDM
                     FGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQ
                     GTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELG
                     LPYDMLYRHPFPGPGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYNKVSQAFTV
                     FLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGIS
                     RVVYDISGKPPATIEWE"
     gene            complement(2380..3846)
                     /gene="guaB"
                     /locus_tag="OQQ19_000544"
     CDS             complement(2380..3846)
                     /gene="guaB"
                     /locus_tag="OQQ19_000544"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004151980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HCS1802289.1"
                     /translation="MLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM
                     LSAAMDTVTEARLAIALAQEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLP
                     TTTLREVKELTERNGFAGYPVVTEENELVGIITGRDVRFVTDLNQPVSVYMTPKERLV
                     TVREGEAREVVLAKMHEKRVEKALVVDDEFHLIGMITVKDFQKAERKPNACKDEQGRL
                     RVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGG
                     NVATAAGARALAEAGCSAVKVGIGPGSICTTRIVTGVGVPQITAVADAVEALEGTGIP
                     VIADGGIRFSGDIAKAIAAGASAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLG
                     AMSKGSSDRYFQSDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCGTI
                     DELRTKAEFVRISGAGIQESHVHDVTITKESPNYRLGS"
     gene            4008..5378
                     /gene="xseA"
                     /locus_tag="OQQ19_000545"
     CDS             4008..5378
                     /gene="xseA"
                     /locus_tag="OQQ19_000545"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HCS1802290.1"
                     /translation="MLPSQSPAIFTVSRLNQTVRLLLEHEMGQVWISGEISNFTQPAS
                     GHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIVESM
                     QPAGEGLLQQKYEQLKAKLQAEGLFDQQYKKPLPSPAHCVGVITSKTGAALHDILHVL
                     KRRDPSLPVIIYPTAVQGDDAPGQIVRAIELANQRNECDVLIVGRGGGSLEDLWSFND
                     ERVARAIFASRIPVVSAVGHETDVTIADFVADLRAPTPSAAAEVVSRNQQELLRQVQS
                     TRQRLEMAMDYYLANRTRRFTQIHHRLQQQHPQLRLARQQTMLERLQKRMSFALENQL
                     KRTGQQQQRLTQRLNQQNPQPKIHRAQTRIQQLEYRLAETLRVQLSATRERFGNAVTH
                     LEAVSPLSTLARGYSVTTATDGNVLKKVKQVKAGEMLTTRLEDGWIESEVKNIQPVKK
                     SRKKVH"
     gene            complement(5375..5590)
                     /locus_tag="OQQ19_000546"
     CDS             complement(5375..5590)
                     /locus_tag="OQQ19_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417005.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HCS1802291.1"
                     /translation="MELHCPQCQHVLDQDNGHARCPSCGEIIEMKALCPDCHQPLQVL
                     KACGAVDYFCQHGHGLISKKRVEFVLA"
     gene            complement(5659..7131)
                     /gene="der"
                     /locus_tag="OQQ19_000547"
     CDS             complement(5659..7131)
                     /gene="der"
                     /locus_tag="OQQ19_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417006.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HCS1802292.1"
                     /translation="MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGR
                     AEIEGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAI
                     AKHLRSREKPTFLVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLL
                     PWMEDLAPQEEVDEDAEYWAQFEVEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTL
                     TNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVI
                     KTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQV
                     KETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAV
                     EDHQPPLVRGRRVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMG
                     SPIRIQFKEGENPYANKRNTLTPTQMRKRKRLMKHIKKNK"
     gene            complement(7249..8427)
                     /gene="bamB"
                     /locus_tag="OQQ19_000548"
     CDS             complement(7249..8427)
                     /gene="bamB"
                     /locus_tag="OQQ19_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamB"
                     /protein_id="HCS1802293.1"
                     /translation="MQLRKLLLPGLLSVTLLSGCSLFNSEEDVVKMSPLPTVENQFTP
                     TTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDG
                     WFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDG
                     LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPATAFGAAVVGGDNGRVSA
                     VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ
                     IMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYD
                     GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR
                     "
     gene            complement(8438..9058)
                     /gene="yfgM"
                     /locus_tag="OQQ19_000549"
     CDS             complement(8438..9058)
                     /gene="yfgM"
                     /locus_tag="OQQ19_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ancillary SecYEG translocon subunit YfgM"
                     /protein_id="HCS1802294.1"
                     /translation="MEIYENENDQVEAVKRFFAENGKALAVGVILGVGALIGWRYWNS
                     HQVDSARSASLAYQNAVTAVSEGKPDSIPAAEKFAAENKNTYGALASLELAQQFVDKN
                     ELEKAAAQLQQGLADTSDENLKAVINLRLARVQVQLKQADAALKTLDTIKGEGWAAIV
                     ADLRGEALLSKGDKQGARSAWEAGVKSDVTPALSEMMQMKINNLSI"
     gene            complement(9076..10350)
                     /gene="hisS"
                     /locus_tag="OQQ19_000550"
     CDS             complement(9076..10350)
                     /gene="hisS"
                     /locus_tag="OQQ19_000550"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HCS1802295.1"
                     /translation="MAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLP
                     IVEQTPLFKRAIGEVTDVVEKEMYTFEDLNGDSLTLRPEGTAGCVRAGIEHGLLYNQE
                     QRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEH
                     VTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQAL
                     LNDAPALGDYLDEESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSL
                     GSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPIVDIYLV
                     ASGADTQSAAMALAERLRDELQGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEV
                     TNGTAVVKDLRSGEQTAVAQDSVAAHLRTLLG"
     gene            complement(10461..11579)
                     /gene="ispG"
                     /locus_tag="OQQ19_000551"
                     /gene_synonym="gcpE"
     CDS             complement(10461..11579)
                     /gene="ispG"
                     /locus_tag="OQQ19_000551"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HCS1802296.1"
                     /translation="MHNQAPIQRRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEAT
                     VNQIKALERVGADIVRVSVPTMDAAEAFKLIKQRVNVPLVADIHFDYRIALKVAEYGV
                     DCLRINPGNIGNEERIRMVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLES
                     AMRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARSGAV
                     KSAIGLGLLLSEGIGDTLRVSLAADPVEEIKVGFDILKSLRIRSRGINFIACPTCSRQ
                     EFDVIGTVNALEQRLEDIITPMDVSIIGCVVNGPGEALVSTLGVTGGNKKSGLYEDGV
                     RKDRLDNNDMIDQLEARIRAKASQLDEARRIDVQQVEK"
     gene            complement(11606..12619)
                     /gene="rodZ"
                     /locus_tag="OQQ19_000552"
     CDS             complement(11606..12619)
                     /gene="rodZ"
                     /locus_tag="OQQ19_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoskeleton protein RodZ"
                     /protein_id="HCS1802297.1"
                     /translation="MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTV
                     RDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLLGLEKQAPLRAAKVAPMQSFSL
                     GKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELSSNSEQ
                     GQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANV
                     DTAATLAPTAATTPDGAAPLPTDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLF
                     SGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQS
                     PAQ"
     gene            complement(12904..14058)
                     /gene="trmG/rlmN"
                     /locus_tag="OQQ19_000553"
     CDS             complement(12904..14058)
                     /gene="trmG/rlmN"
                     /locus_tag="OQQ19_000553"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA
                     large subunit methyltransferase RlmN"
                     /protein_id="HCS1802298.1"
                     /translation="MSEQLVTPENVTTKDGKINLLDLNRQQMREFFKDLGEKPFRADQ
                     VMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQ
                     RVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG
                     AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPA
                     LDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVT
                     IEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVL
                     MSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEAIDIKAV"
     gene            complement(14208..14639)
                     /gene="ndk"
                     /locus_tag="OQQ19_000554"
     CDS             complement(14208..14639)
                     /gene="ndk"
                     /locus_tag="OQQ19_000554"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HCS1802299.1"
                     /translation="MAIERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTV
                     EQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGT
                     LRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVCPRTR"
     gene            complement(14788..17100)
                     /gene="pbpC"
                     /locus_tag="OQQ19_000555"
     CDS             complement(14788..17100)
                     /gene="pbpC"
                     /locus_tag="OQQ19_000555"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417014.1"
                     /note="penicillin-binding protein 1C; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase PbpC"
                     /protein_id="HCS1802300.1"
                     /translation="MLRLLTKRGCWITLAAVPFLLFLAAWGADKLWPLPLHEVNPARV
                     VVAQDGTPLWRFADADGIWRYPVTIEDVSPRYLEALINYEDRWFWKHPGVNPFSVARA
                     AWQDLTSGRVISGGSTLTMQVARLLDPHPKTFGSKILQLWRALQLEWHLSKREILILY
                     LNRAPFGGTLQGIGAASWAYLGKSPANLSYSEAAMLAVLPQAPSRLRPDRWPERAEAA
                     RNKVLERMAVQGVWSREQVKESREEPIWLAPRQMPQLAPLFSRMMLGKSKSDKIVTTL
                     DAGLQRRLEELAQNWKGRLPPRSSLAMIVVDHTDMRVRGWVGSVDLNDDSRFGHVDMV
                     NAIRSPGSVLKPFVYGLALDEGLIHPASLLQDVPRRTGDYRPGNFDSGFHGPISMSEA
                     LVRSLNLPAVQVLEAYGPKRFAAKLRNVGLPLYLPNGAAPNLSLILGGAGAKLEDMAA
                     AYTAFARHGKAGKLRLQPDDPLLEWPLMSSGAAWIIRRIMADEAQPLPDSALPRVAPL
                     AWKTGTSYGYRDAWAIGVNARYVIGIWTGRPDCTPVVGQFGFASAVPLLNQVNNILLS
                     RSANLPEDPRPNSVTRGVICWPGGQSLPEGDGNCRRRLATWLLDGSQPPTLLLPEQEG
                     INGIRFPIWLDENGKRVAADCPQARQEMINVWPLPLEPWLPASERRAVRLPPASTSCP
                     PYGHYAQLPLQLTGVRDGAIIKRLPGAAEATLPLQSSGGAGERWWFLNGEPLTERGRN
                     VTLHLTDKGDYQLLVMDDVGQIATVKFVMQ"
     gene            complement(17101..22062)
                     /gene="yfhM"
                     /locus_tag="OQQ19_000556"
     CDS             complement(17101..22062)
                     /gene="yfhM"
                     /locus_tag="OQQ19_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha2-macroglobulin"
                     /protein_id="HCS1802301.1"
                     /translation="MKKLRVAACMLMLALAGCDNNDNAPTAVKKDAPSEVTKAASSEN
                     ASSAKLSVPERQKLAQQSAGKVLTLLDLSEVQLDGAATLVLTFSIPLDPDQDFSRVIH
                     VVDKKSGKVDGAWELSDNLKELRLRHLEPKRDLIVTIGKEVKALNNATFSKDYEKTIT
                     TRDIQPSVGFASRGSLLPGKVVEGLPVMALNVNNVDVNFFRVKPESLPAFISQWEYRN
                     SLANWQSDKLLQMADLVYTGRFDLNPARNTREKLLLPLGDIKPLQQAGVYLAVMNQAG
                     RYDYSNPATLFTLSDIGVSAHRYHNRLDIFTQSLENGAAQQGIEVSLLNEKGQTLTQA
                     TSDAQGHVQLENDKNAALLLARKDGQTTLLDLKLPALDLAEFNIAGAPGYSKQFFMFG
                     PRDLYRPGETVILNGLLRDADGKALPDQPIKLDVIKPDGQVLRSVVSQPENGLYHFTW
                     PLDSNAATGMWHIRANTGDNQYRMWDFHVEDFMPERMALNLTGEKTPLTPNDEVKFSV
                     VGYYLYGAPANGNTLQGQLFLRPLREAVSALPGFEFGDIAAENLSRTLDEVQLTLDDK
                     GRGEVSTESQWKETHSPLQVIFQGSLLESGGRPVTRRAEQAIWPANALPGLRPQFALK
                     SVYDYRTDSTVKQPIVDEGSNAAFDIVYSDAQGVKKAVSGLQVRLIRERRDYYWNWSE
                     DEGWQSQFDQKDLIENEQTLDLKADETGKVSFPVEWGAYRLEVKAPNEAVSSVRFWAG
                     YSWQDNSDGSGAVRPDRVTLKLDKASYRPGDTIKLHIAAPTAGKGYAMVESSEGPLWW
                     QEIDVPAQGLDLTIPVDKTWNRHDLYLSTLVVRPSDKSRSATPKRAVGVLHLPLGDEN
                     RRLDLALETPAKMRPNQPLTVKIKASTKNGEKPKQVNVLVSAVDSGVLNITDYVTPDP
                     WQAFFGQKRYGADIYDIYGQVIEGQGRLAALRFGGDGDELKRGGKPLVNHVNIVAQQA
                     LPVTLNEQGEGSVTLPIGDFNGELRVMAQAWTADDFGSNESKVIVAAPVIAELNMPRF
                     MASGDTSRLTLDITNLTDKPQKLNVALTASGLLELVSDSPAAVELAPGVRTTLFIPVR
                     ALPGYGDGEIQATISGLALPGETVADQHKQWKIGVRPAFPAQTVNYGTALQPGETWAI
                     PADGLQNFSPVTLEGQLLLSGKPPLNIARYIKELKAYPYGCLEQTASGLFPSLYTNAA
                     QLQALGIKGDSDEKRRASVDIGISRLLQMQRDNGGFALWDKNGDEEYWLTAYVMDFLV
                     RAGEQGYSVPTDAINRGNERLLRYLQDPGMMSIPYADNLKASKFAVQSYAALVLARQQ
                     KAPLGALREIWEHRADAASGLPLLQLGIALKTMGDATRGEEAIVLALKTPRNSDERIW
                     LGDYGSPLRDNALMLSLLEENKLLPDEQYTLLNTLSQQAFGERWLSTQESNALFLAAR
                     TIQDLPGKWQAQTSFSAEPLTGEKTLNSNLNSDQLATLQVRNSGDQPLWLRMDASGYP
                     QSAPLPANNVLQIERHILGTDGKSKSLDSLRSGDLVLVWLQVKASNSVPDALVVDLLP
                     AGLELENQNLANGSASLEQSGDEVQNLLNQMQQASIKHIEFRDDRFVAAVAVDEYQPV
                     TLVYLARAVTPGTYQVPQPMVESMYVPQWRATGAAEDLLIVRP"
     gene            22262..23107
                     /gene="sseA"
                     /locus_tag="OQQ19_000557"
     CDS             22262..23107
                     /gene="sseA"
                     /locus_tag="OQQ19_000557"
                     /EC_number="2.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-mercaptopyruvate sulfurtransferase"
                     /protein_id="HCS1802302.1"
                     /translation="MSTTWFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLN
                     GHIPGAVFFDIEALSDHTSPLPHMLPRPKTFAVAMRELGVNQDKHLIVYDEGNLFSAP
                     RAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVKVTDV
                     LLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDE
                     LDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLP
                     VEPVK"
     gene            complement(23600..24376)
                     /gene="sseB"
                     /locus_tag="OQQ19_000558"
     CDS             complement(23600..24376)
                     /gene="sseB"
                     /locus_tag="OQQ19_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708361.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enhanced serine sensitivity protein SseB"
                     /protein_id="HCS1802303.1"
                     /translation="MSETKNELEDLLEKAATEPAHRPAFFRTLLESTVWVPGTAAQGE
                     AVVEDSALDLQHWEKEDGTSVIPFFTSLEALQQAVEDEQAFVVMPVRTLFEMTLGETL
                     FLNAKLPTGKEFMPREISLLIGEEGNPLSSQEILEGGESLILSEVAEPPAQMIDSLTT
                     LFKTIKPVKRAFICSIKENEEAQPNLFIGIEADGDIEEIIQATGSVATDTLPGDEPID
                     ICQVKKGEKGISHFITEHIVPFYERRWGGFLRDFKQNRII"
     gene            complement(24518..25801)
                     /gene="pepB"
                     /locus_tag="OQQ19_000559"
     CDS             complement(24518..25801)
                     /gene="pepB"
                     /locus_tag="OQQ19_000559"
                     /EC_number="3.4.11.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase PepB"
                     /protein_id="HCS1802304.1"
                     /translation="MTEAMKITLSTQPADARWGEKATYSINNDGITLHLNGADDLGLI
                     QRAARKIDGLGIKHVQLSGEGWDADRCWAFWQGYKAPKGTRKVEWPDLDDAQRQELDN
                     RLMIIDWVRDTINAPAEELGPSQLAQRAVDLISNVAGDRVTYRITKGEDLREQGYMGL
                     HTVGRASERSPVLLALDYNPTGDKEAPVYACLVGKGITFDSGGYSIKQTAFMDSMKSD
                     MGGAATVTGALAFAITRGLNKRVKLFLCCADNLISGNAFKLGDIITYRNGKKVEVMNT
                     DAEGRLVLADGLIDASAQKPEMIIDAATLTGAAKTALGNDYHALFSFDDALAGRLLAS
                     ASQENEPFWRLPLAEFHRSQLPSNFAELNNTGSAAYPAGASTAAGFLSHFVENYQQGW
                     LHIDCSATYRKAPVEQWSAGATGLGVRTIANLLTA"
     gene            complement(25979..26179)
                     /gene="iscX"
                     /locus_tag="OQQ19_000560"
     CDS             complement(25979..26179)
                     /gene="iscX"
                     /locus_tag="OQQ19_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004104502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HCS1802305.1"
                     /translation="MGLKWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDD
                     DPQASNEKILEAILLVWLDEAE"
     gene            complement(26191..26526)
                     /gene="fdx"
                     /locus_tag="OQQ19_000561"
     CDS             complement(26191..26526)
                     /gene="fdx"
                     /locus_tag="OQQ19_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015683702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HCS1802306.1"
                     /translation="MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEK
                     SCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQARVTDEDLVVEIPR
                     YTINHAREH"
     gene            complement(26528..28378)
                     /gene="hscA"
                     /locus_tag="OQQ19_000562"
     CDS             complement(26528..28378)
                     /gene="hscA"
                     /locus_tag="OQQ19_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001559634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HCS1802307.1"
                     /translation="MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETL
                     ADHEGRHLLPSVVHYQQQGHSVGYDARTNAALDTANTISSVKRLMGRSLADIQQRYPH
                     LPYQFQASENGLPMIETAAGLLNPVRVSADILKALAARATEALAGELDGVVITVPAYF
                     DDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISIL
                     RLSRGVFEVLATGGDSALGGDDFDHLLADYIREQADIPDRSDNRVQRELLDAAIAAKI
                     ALSDADSVTVNVAGWQGEISREQFNELIAPLVKRTLLACRRALKDAGVEADEVLEVVM
                     VGGSTRVPLVRERVGEFFGRPPLTSIDPDKVVAIGAAIQADILVGNKPDSEMLLLDVI
                     PLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRS
                     LARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE
                     IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDNAA
                     AHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKGHSVDEV"
     gene            complement(28395..28910)
                     /gene="hscB"
                     /locus_tag="OQQ19_000563"
     CDS             complement(28395..28910)
                     /gene="hscB"
                     /locus_tag="OQQ19_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone HscB"
                     /protein_id="HCS1802308.1"
                     /translation="MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQ
                     LAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREEL
                     DEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTVRKLRFLDKLRSS
                     AEQLEEKLLDF"
     gene            complement(29006..29329)
                     /gene="iscA"
                     /locus_tag="OQQ19_000564"
     CDS             complement(29006..29329)
                     /gene="iscA"
                     /locus_tag="OQQ19_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HCS1802309.1"
                     /translation="MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEF
                     VDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCG
                     ESFHV"
     gene            complement(29346..29732)
                     /gene="iscU"
                     /locus_tag="OQQ19_000565"
     CDS             complement(29346..29732)
                     /gene="iscU"
                     /locus_tag="OQQ19_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000331707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HCS1802310.1"
                     /translation="MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQ
                     IKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLVEAQAIKNTDIAEELELPPV
                     KIHCSILAEDAIKAAIADYKSKREAK"
     gene            complement(29760..30974)
                     /gene="iscS"
                     /locus_tag="OQQ19_000566"
     CDS             complement(29760..30974)
                     /gene="iscS"
                     /locus_tag="OQQ19_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017459011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HCS1802311.1"
                     /translation="MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFG
                     WQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKT
                     EHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVV
                     QDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYV
                     RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNR
                     LWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLE
                     PSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQ
                     GVDLNSIEWAHH"
     gene            complement(31086..31574)
                     /gene="iscR"
                     /locus_tag="OQQ19_000567"
     CDS             complement(31086..31574)
                     /gene="iscR"
                     /locus_tag="OQQ19_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002913993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HCS1802312.1"
                     /translation="MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQ
                     LFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQGGD
                     KCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRTRTQDAIDVKL
                     RA"
     gene            complement(31844..32584)
                     /gene="trmJ"
                     /locus_tag="OQQ19_000568"
     CDS             complement(31844..32584)
                     /gene="trmJ"
                     /locus_tag="OQQ19_000568"
                     /EC_number="2.1.1.200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ"
                     /protein_id="HCS1802313.1"
                     /translation="MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDS
                     QAIALAAGASDVIGNAHIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA
                     EAANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAW
                     LATQENGEQVEHEETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTR
                     ARPESQELNILRGILASIEQQNKGNKAE"
     gene            32703..33506
                     /gene="suhB"
                     /locus_tag="OQQ19_000569"
     CDS             32703..33506
                     /gene="suhB"
                     /locus_tag="OQQ19_000569"
                     /EC_number="3.1.3.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000553460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-1-monophosphatase"
                     /protein_id="HCS1802314.1"
                     /translation="MHPMLNIAVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVD
                     KAAEAVIIDTIRKSYPQHTIITEESGELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVS
                     IAVRIKGRTEVAVVYDPMRNELFTATRGQGAQLNGYRLRGSTARDLDGTILATGFPFK
                     AKQYATTYINIVGKLFNECADFRRTGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGEL
                     LVREAGGIVSDFTGGHNYMLTGNIVAGNPRVVKAMLANMRDELSDALKR"
     gene            33651..34505
                     /locus_tag="OQQ19_000570"
     CDS             33651..34505
                     /locus_tag="OQQ19_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311427.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS1802315.1"
                     /translation="MALPVNKRVLKILFILFVVAFCVYLVPRVAINFFYYPDDKIYGP
                     DPWSAESVEFTAKDGTRLQGWFIPSSTGPADNAIATIIHAHGNAGNMSAHWPLVSWLP
                     ERNFNVFMFDYRGFGKSKGTPSQAGLLDDTQSAINVVRHRSDVNPQRLVLFGQSIGGA
                     NILAVIGQDDREGIRAVILDSTFASYATIANQMIPGSGYLLDESYSGENYIASVSPIP
                     LLLIHGKADHVIPWQHSEKLYSLAKETKRLILIPDGEHIDAFSDRHGDVYREQMVDFI
                     LSALNPQN"
     gene            34696..35976
                     /gene="csiE"
                     /locus_tag="OQQ19_000571"
     CDS             34696..35976
                     /gene="csiE"
                     /locus_tag="OQQ19_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417030.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stationary phase inducible protein CsiE"
                     /protein_id="HCS1802316.1"
                     /translation="MMPTLAPPSVLSAPQRRCQILLTLFQPGLTATMATFSELNGVDD
                     DIASLDISETGREILRYHQLTLTTGYDGSYRVEGTVLNQRLCLFHWLRRGFRLCPSFI
                     TSQFTPALKSELKRRGIARNFYDDTNLQALVNLCSRRLQKRFETRDIHFLCLYLQYCL
                     LQHHAGITPQFNPLQRRWAESCLEFQVAQEIGRHWQRRALQPVPPDEPLFMALLFSML
                     RVPDPLRDAHQRDRQLRQSIKRLVNHFRELGNVRFYDEQGLCDQLYTHLAQALNRSLF
                     AIGIDNTLPEEFAKLYPRLVRTTRAALAGFESEYGVHLSDEESGLVAVIFGAWLMQEN
                     DLHEKQIILLTGNDSEREAQIEQQLRELTLLPLNIKHMSVKAFLQTGAPRGAALIIAP
                     YTMPLPLFSPPLIYTDLTLTTHQQEQIRKMLESA"
     gene            complement(35968..37107)
                     /locus_tag="OQQ19_000572"
     CDS             complement(35968..37107)
                     /locus_tag="OQQ19_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate MFS transporter"
                     /protein_id="HCS1802317.1"
                     /translation="MVLQSTRWLALGYFTYFFSYGIFLPFWSVWLKGIGLTPETIGLL
                     LGAGLVARFLGSLLIAPRVSDPSRLISALRVLAMMTLLFAVAFWAGAHVAWLMLVMIG
                     FNLFFSPLVPLTDALANTWQKQFPLDYGKVRLWGSVAFVIGSALTGKLVTMFDYQVIL
                     ALLTLGVASMLLGFLIRPTIQPQGASRQQESTGWSAWLALVLQNWRFLACVCLLQGAH
                     AAYYGFSAIYWQAAGYSASAVGYLWSLGVVAEVIIFALSNKLFRRCSARDMLLISAIC
                     GVVRWGIMGATTALPWLIVVQILHCGAFTVCHLAAMRYIAARQGSEVIRLQAVYSAVA
                     MGGSIAIMTVFAGFLYQYLGHGVFWVMALVALPAMFLRPKVVPSC"
     gene            complement(37267..38157)
                     /gene="hcaR"
                     /locus_tag="OQQ19_000573"
     CDS             complement(37267..38157)
                     /gene="hcaR"
                     /locus_tag="OQQ19_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator HcaR"
                     /protein_id="HCS1802318.1"
                     /translation="MELRHLRYFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVG
                     VPLLVRDKRKVALTAAGECFLQDALAILEQAENAKLRARKTVQEDRQLTIGFVPSAEV
                     NLLPKVLPMFRLRQPDTLIELVSLITTQQEEKIRRGELDVGLMRHPVYSPEIDYLELF
                     DEPLVVVLPVDHPLAHEKEITAAQLDGVNFVSTDPAYSGSLAPIVKAWFAQENSQPNI
                     VQVATNILVTMNLVGMGLGVTLIPGYMNNFNTGQVVFRPIAGNVPSIALLMAWKKGEM
                     KPALRDFIAIVQERLASVTA"
     gene            38293..39654
                     /locus_tag="OQQ19_000574"
     CDS             38293..39654
                     /locus_tag="OQQ19_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic ring-hydroxylating dioxygenase subunit
                     alpha"
                     /protein_id="HCS1802319.1"
                     /translation="MTTPSDLNIYQLIDTQNGRVTPRIYTDPDIYQLELERIFGRCWL
                     FLAHESQIPKPGDFFNTYMGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRA
                     FTCPYHGWSYGINGELIDVPLEPRAYPQGLCKSHWGLNEVPCVESYKGLIFGNWDTSA
                     PGLRDYLGDIAWYLDGMLDRREGGTEIVGGVQKWVINCNWKSPAEQFASDQYHALFSH
                     ASAVQVLGAKDDGSDKRLGDGQTARPVWETAKDALQFGQDGHGSGFFFTEKPDANVWV
                     DGAVSSYYRETYAEAEQRLGEVRALRLAGHNNIFPTLSWLNGTATLRVWHPRGPDQVE
                     VWAFCITDKAASDEVKAAFENSATRAFGPAGFLEQDDSENWCEIQKLLKGHRARNSKL
                     CLEMGLGQEKRRDDGIPGITNYIFSETAARGMYQRWADLLSSESWQEVLDKTAAYQQE
                     VMK"
     gene            39651..40169
                     /locus_tag="OQQ19_000575"
     CDS             39651..40169
                     /locus_tag="OQQ19_000575"
                     /EC_number="1.14.12.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate/cinnamic acid dioxygenase
                     subunit beta"
                     /protein_id="HCS1802320.1"
                     /translation="MSAQVSLELHLRISQFLFHEASLLDDWKFRDWLAQLDEEIRYTM
                     RTTVNAQTRDRRKGVQPPTTWIFNDTKDQLERRIARLETGMAWAEEPPSRTRHLISNC
                     QISETDIPNVFAVRVNYLLYQAQKERDETFYVGTRFDKVRRLEDDNWRLLERDIVLDQ
                     AVITSHNLSVLF"
     gene            40169..40489
                     /locus_tag="OQQ19_000576"
     CDS             40169..40489
                     /locus_tag="OQQ19_000576"
                     /EC_number="1.14.12.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-phenylpropionate/cinnamic acid
                     dioxygenase ferredoxin subunit"
                     /protein_id="HCS1802321.1"
                     /translation="MNRIYACPVADVPEGEALRIDTSPVIALFNVGGEFYAINDRCSH
                     GNASMSEGYLEDDATVECPLHAASFCLKTGKALCLPATDPLTTYPVHVEGSDIFIDLP
                     EAQP"
     gene            40486..41298
                     /gene="hcaB"
                     /locus_tag="OQQ19_000577"
                     /gene_synonym="phdD"
                     /gene_synonym="yfhX"
     CDS             40486..41298
                     /gene="hcaB"
                     /locus_tag="OQQ19_000577"
                     /gene_synonym="phdD"
                     /gene_synonym="yfhX"
                     /EC_number="1.3.1.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate-dihydrodiol/cinnamic
                     acid-dihydrodiol dehydrogenase"
                     /protein_id="HCS1802322.1"
                     /translation="MSDLHNESIFITGGGSGLGLALVERFIEEGAQVATLELSAAKVA
                     SLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNASLVNTPA
                     ETLETGFHELFNVNVLGYLLGAKACAPALIASEGSMIFTLSNAAWYPGGGGPLYTASK
                     HAATGLIRQLAYELAPKVRVNGVGPCGMASDLRGPQALGQSETSIMQSLTPEKIAAIL
                     PLQFFPQPADFTGPYVMLASRRNNRALSGVMINADAGLAIRGIRHVAAGLDL"
     gene            41308..42320
                     /locus_tag="OQQ19_000578"
                     /pseudo
     CDS             41308..42320
                     /locus_tag="OQQ19_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417037.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phenylpropionate dioxygenase ferredoxin
                     reductase subunit"
BASE COUNT        10022 a        11713 c        10634 g        10002 t
ORIGIN      
        1 acgacaggtt tagccgttgt tattaccaca acgtataacg aaacgcgtat tcagccaaat
       61 actaaatgtc ctgaaaagag ctaataatca ggaggagtca tgaagaaagt ttttctttgc
      121 gccatcttgg cctccttaag ctatccggct atcgcctcat cattgcagga tcaactctct
      181 gctgtagcag aagcggaaca gcaaggtaaa aatgaagagc aaaggcagca tgacgaatgg
      241 gtcgcggagc gcaacaggga aatccagcaa gagaagcaac gtcgcgcaaa tgcccaggtc
      301 gccgctaaca aaagagcggc aacggcagca gcaaataaga aagctcgtca ggataaactg
      361 gacgccgaag cctctgcgga caaaaaacgc gatcaaagtt atgaagatga gctacgcagc
      421 ttagagattc agaaacaaaa actggcgctg gcaaaagaag aagcccgcgt taagcgagaa
      481 aacgaattta tcgatcagga actgaagcac aaagctgcgc aaaccgatgt ggtgcaatct
      541 gaagctgacg ccaacagaaa tatgactgaa ggcggtcgcg atctgatgaa aagcgtgggc
      601 aaagcagaag agaacaaatc ggacagctgg tttaattaat cgatgttagt aacttcaagc
      661 ctatgattct tgaagataaa aaaccctctg tagtaacaga gggttttgtt cattcatagt
      721 gcagggatta aaatcattcc cactcaatgg tagctggcgg cttgccgctg atgtcataca
      781 ccacgcggga aataccgttc acttcattga taatgcggtt ggaaacgcga ccgaggaaat
      841 cgtacggcag atgcgcccag tgtgcggtca taaagtcgat ggtttcgaca gcacgcagag
      901 agacaaccca gtcatactta cgaccatcgc ccattacgcc aacggaacgt accggcagga
      961 acacagtgaa cgcctggctg actttgttgt acaggtccgc tttacgcagt tcttcaatga
     1021 agatggcgtc agcacggcgc agcaggtcac agtactcttt cttcacttca cccagcacac
     1081 gaacgccaag gcctggtccc gggaacgggt gacggtacag catgtcgtac ggcaggccca
     1141 gctccagacc aatcttacgc acttcgtctt tgaacagctc tttcagcggt tcaaccaggc
     1201 ccatcttcat ctctttcggc aggccgccca cgttgtggtg agatttgatg acgtgtgctt
     1261 taccggttgc agaagccgca gattcgataa cgtcagggta gatggtgccc tgcgccagcc
     1321 acttcacgtc ttccagtttc agcgcttctt catcgaacac ttcaacgaaa acgcgcccga
     1381 tgattttacg ttttgcttcc ggatcgtttt cgccagccag cgctgacagg aagcgatctt
     1441 ctgccggtac gtgaacaatg ttcagaccaa agtgatcgcc aaacatatcc agaacctgct
     1501 ctgcttcgtt gagacgcagc aggccgttgt cgacgaatac gcaagtcaga tttttaccga
     1561 tagcgcggtg cagcagcatt gcggttacgg aggaatccac accaccagag aggccgagga
     1621 tgactttatc gtcgcctacc tgctcgcgga tgcgagctac agcatcgtcg ataattttcg
     1681 ctggcgtcca cagggcttca cactggcaga tatcacgcac aaaacgctcc agcatgtgca
     1741 taccctggcg ggtgtgagtc acttccgggt ggaactgtac gccatagaag cgtttttctt
     1801 cgttagccat aatggcaaac gggcagcttt cggtgctggc tacggtgacg aagtcggacg
     1861 ggatagcggt aactttatcg ccgtggctca tccagacatc gagcagcggt ttaccgtctg
     1921 cggtcagcgc atcttcgata ccgcgaacca gtgcgctgtc gtttacgact tcaacctgcg
     1981 cgtagccaaa ttcacgttcg ttagaggctt caacgtgacc gcccaactgc attgccatgg
     2041 tctgcatgcc atagcaaacg ccgaataccg gtacgcctgc ttcaaagaca tactgcggcg
     2101 cacgcggact gttttcttca gtagtacttt ccgggccgcc ggaaagaata atgccgcttg
     2161 gattgaagtc acgaatttgt gcttctgtca catcccacgc ccacagttcg cagtaaacac
     2221 ccagctcacg cacgcggcgc gcaaccagtt gagtgtactg agaaccgaag tccagaatga
     2281 ggatgcgatg cttatgaatg ttttccgtca ttgacgctta ttccgaggca agtgaaacag
     2341 ataatataaa tcgcccgaca tgaagtcggg cgaagagaat caggagccca gacggtagtt
     2401 cggggactct ttagtaatgg tcacgtcgtg aacgtggctt tcctgaatgc ccgcaccgct
     2461 gatacgtaca aactccgctt tagtacgcag ttcgtcgata gtaccacagc cggtcaggcc
     2521 catacaggag cgcaggccgc ccatctgctg gtgaatgatc tctttcaggc gacctttata
     2581 ggctacgcga ccttcgatac cttccggcac tagtttgtcg gcagcgttgt cactctggaa
     2641 gtaacggtca gaagaacctt tggacatcgc acccagagag cccataccac ggtaagattt
     2701 gtaagaacgg ccctggtaga gttcaatttc acccggagat tcttcagtac ccgccagcat
     2761 ggaacccacc attaccgcgc ttgcgccagc ggcgatagct ttggcgatgt cgccggagaa
     2821 gcgaatacca ccatctgcga taaccggaat acctgtgcct tccagcgctt caactgcgtc
     2881 agcaacggca gtgatctgcg gaacacctac gccagtaacg atacgagtcg tacagataga
     2941 accagggccg ataccgactt taaccgcgct gcaaccagct tctgccaaag cgcgtgcacc
     3001 tgcagctgtt gccacgttgc cgccgatgat ttgcagatcc ggatatttag cacgggtttc
     3061 acggatacgc tgcaaaacgc cttctgagtg gccgtgggag gagtcgatca gcagaacgtc
     3121 aacgccagcg gcaaccagcg cgtcaacacg ctcttcgtta cccgcacctg cgccaactgc
     3181 agcaccaaca cgcagacggc cttgctcgtc tttacaggcg ttcggtttac gttccgcttt
     3241 ctggaagtct ttcacggtga tcatgccgat caggtggaat tcgtcatcaa ccaccagcgc
     3301 tttttcaacg cgtttttcgt gcatttttgc cagcaccact tcacgggctt caccttcacg
     3361 cacggtgacc agacgctctt tcggcgtcat gtaaacgcta accggctggt tcaggtcggt
     3421 aacaaaacgc acgtcacgac cggtgataat acccaccagt tcgttttctt cggtaacaac
     3481 cggatagccc gcaaaaccgt tacgctcggt cagttctttc acttcgcgca gcgtcgtggt
     3541 tggcagaaca gtctgcggat cagtcaccac accagattcg tgttttttca cacggcgaac
     3601 ttcttctgcc tggcgttcaa tggacatgtt tttgtggata aagccgatac cgccttcctg
     3661 agccagagca atagccaggc gcgcttccgt tacggtatcc attgctgcgg aaagcatagg
     3721 gatattcaga cgaatagttt tcgtcagctg ggtgctgagg tcagcagtat tcggcagaac
     3781 ggtagaatga gcaggaacga ggagaacgtc gtcaaacgtc agagcttctt tagcgatacg
     3841 tagcatgggc aatatctcga ccagagtggt taataaatat tgccgcggca ttatacagag
     3901 cgtaaccgat tgcatctacc cctttttgca aaaaatgctt gctatccccg aagggcgggt
     3961 tactatcgac tgaataacct gctgatttag aatttgatct cgctcacatg ttaccttctc
     4021 aatcccctgc aatttttacc gttagtcgcc tgaatcaaac ggttcgtctg ctgcttgagc
     4081 atgagatggg acaggtttgg atcagcggcg aaatctctaa tttcacacaa ccggcttccg
     4141 gtcactggta ctttacactc aaagacgaca ccgcccaggt acgctgcgcg atgttccgca
     4201 acagcaaccg ccgggtgacc ttccgtccac agcatggaca acaagtttta gttcgcgcca
     4261 atattacgct ctacgagccg cgcggtgact accagataat cgttgagagt atgcagccgg
     4321 ccggtgaagg gctgctgcaa cagaagtacg aacagctcaa agcgaagttg caggctgaag
     4381 gtttgttcga tcagcaatac aaaaaaccac ttccctcccc tgcgcattgc gttggtgtga
     4441 tcacctcaaa aaccggtgct gcgctacatg atattttgca tgtgttaaaa cgtcgcgatc
     4501 cttctctacc ggtgatcatc taccccaccg ccgttcaggg cgatgacgca ccggggcaaa
     4561 ttgttcgcgc cattgaactg gcgaatcagc gcaatgagtg cgacgtgttg atcgttgggc
     4621 gcggcggcgg ttcgctggaa gatttatgga gttttaacga cgaacgcgta gcgcgggcga
     4681 tttttgccag ccgcattccg gtcgtcagcg ccgtcgggca tgagacggat gtgaccattg
     4741 ccgattttgt tgccgatctg cgtgcgccaa cgccgtctgc cgccgctgaa gtagtgagcc
     4801 gtaatcagca agagttactg cgccaggtgc aatcgacccg tcaacggctg gagatggcga
     4861 tggattatta tctcgccaac cgcacgcgtc gctttacgca gatccatcac cgattacagc
     4921 aacagcatcc gcagctccgg ctggcacgcc agcaaaccat gcttgagcgc ctgcaaaagc
     4981 ggatgagctt tgcgctggaa aatcaactta agcgtaccgg gcaacagcag cagcggttaa
     5041 cacagcggct gaatcagcaa aatccacagc cgaagattca tcgcgcgcaa acgcgcattc
     5101 agcaactgga atatcgttta gcagaaaccc tgcgcgtaca gcttagcgcc acgcgtgaac
     5161 gtttcggtaa tgcagtaacg cacctcgaag ccgtaagccc actgtcaacg ctggcgcgtg
     5221 gatacagcgt tactactgct actgacggca atgtactgaa aaaagtgaag caagttaaag
     5281 cgggtgaaat gctaaccaca cgtctggaag acggctggat agaaagtgaa gttaaaaaca
     5341 tccagccagt aaaaaaatcg cgtaaaaagg tgcattaagc cagcacgaat tcaacgcgtt
     5401 ttttcgatat caagccatgc ccgtgctgac agaagtaatc tactgcaccg caggctttta
     5461 acacctgcaa cggttgatgg cagtctggac aaagagcttt catttcaata atttccccgc
     5521 aggatgggca acgcgcatgg ccgttatcct gatcaagcac atgctgacat tgtggacaat
     5581 gcagttccat atgaattcct ccggtagcca tccctctaca ttcatagagg gaatggcaga
     5641 taaaatactt acggataatt atttattttt cttgatgtgc ttcatcagac gcttacgttt
     5701 acgcatctgg gttggcgtca gggtgttacg cttgttcgca tacgggtttt ccccttcttt
     5761 gaactgaata cgaatcggcg atcccattac gtccagcgat ttgcggaagt agttcatcaa
     5821 gtagcgcttg taggaatcag gcaggtcttt cacctgatta ccgtgaatca ccacaatcgg
     5881 cgggttataa ccaccagcgt gggcatattt cagcttcaca cgacgaccgc gtaccagcgg
     5941 cggttggtga tcttcaacag ccatcgtcat gatgcgcgtc agcatagagg tccccacacg
     6001 acgggtggag ctgtcatacg cttcacgtac tgattcaaac aagttaccaa caccactgcc
     6061 gtgcaaggca gagataaagt gcacacgagc aaaatcgata aagcccagac ggaagtccag
     6121 cgtttctttc acctgctctt tcacttcctg gctcaggcca tcccacttat tcaccacaat
     6181 gacaagtgag cgcccactat tgagaataaa gcccagcagc gagagatcct gatcggaaat
     6241 accttcgcgc gcatcaatca ctaacatcac cacgttggca tcttcaatgg cctgcaacgt
     6301 tttgattacg gagaatttct ctacagcatc ggtgattttg ccgcgtttac gtacgccagc
     6361 ggtgtcaatg agcacatact cacgtccatc gcgttccatt ggaatgtaga tactgtcacg
     6421 cgtcgtgcca ggcatgtcat aaacaacaac gcgctcttca ccaagaatac ggttagtgag
     6481 tgtagactta cctacgttcg gacgacccac aatcgccagt ttgatcggca gactttgcgg
     6541 gtcgaagtcg tcttcctctt cttcttcgcc gttctcttcc acttcaaatt gcgcccagta
     6601 ttcagcgtct tcgtcgactt cctcttgcgg tgcgagatct tccatccacg gcagcagcac
     6661 atgctccagc agacttaata cgccacgacc gtgagacgcg gcgatcgggt agatttcacc
     6721 taagccaagc gagtagaaat caaccactgc ctgatcggga tccagaccgt cagttttgtt
     6781 tgccaccagg aaggtcggtt tttcacggga gcgcagatgt ttggcaatcg cttcatctgc
     6841 cggcatcagg cccgcgcgcg catccaccat aaacagtacg acgtccgctt cttcaatcgc
     6901 cagcagcgac tgttccgcca tgcgggtttc tacaccgtct tctgtgccat caatcccgcc
     6961 ggtatcaata cagataaact cacggccttc aatttccgca cgaccgtact tacggtcacg
     7021 agtcagaccc gggaaatccg caaccagcgc atctcgggtg cgagttagac ggttaaataa
     7081 cgtggatttt cctacgttag ggcgcccgac aagcgcgacc acaggtacca tgtttaaagc
     7141 ctcattttta taaatcatca gacaacgcac gctatattcg cgtcgttgtt aaaaacagga
     7201 aaacggcccc tgtccaggag ccgttttcaa agtgaacgac agagacgatt aacgtgtaat
     7261 agagtacacg gttccgtctt ttgcctggat cagcagtttg ccgtcagcgg caaccggttc
     7321 agtctggaaa ccggaactat caactttttg ctgggcaacg aaacgaccat cttcgacatt
     7381 aatccagtgc agataacctt cactgtcacc gaccaccagg ttgccatcat acagcaccgg
     7441 agaagtcagc aggcgatgca acagatcgct ttgtgtccac agcgtaacgc cgccatcaat
     7501 ggtcaacgcc atcacccggt cattttgatc gaccagatag atgcgattgc cgtcgacgat
     7561 gaaatcattc accgaaccca gttcgcgttt ccacataatc tgaccactgc gcagatcaag
     7621 cgccgtcagg ttaccattat aggccagcgc gaaaacaacg ccgttaacaa cgacgggagt
     7681 cgtgtcaaca tcgctcagac ggtcaatttc ggtagaaccg gtcgcctggg aaatacgctg
     7741 ctgccaaatc atctggccct gttccatcag cactgcgctg acgcgaccat tatcgccccc
     7801 cacgacggcc gcaccaaaag ccgttgccgg cgcagactcg ccacgcaaag agagcgaagg
     7861 catatcgagg ttaactgtcc atttgacagc gccgtcagct tcgttcagcg cttgtaactg
     7921 accgttactg gtgtggatta acaccagacc gtcgctgacc accgggcgcg aaagtgcttc
     7981 acccgcgact ttagtttgcc atgccacagt accatcgctg gtattcagcg cgtaaacctg
     8041 cgccttttcg ctgccaatgt agacatgccc accagacacg gtcacaccgc cagaaagtaa
     8101 tgcaggctct ttagagaacc agccatcttt ctcggccagg ctgacagacc agatttcttt
     8161 gccatcatcc gcattcagcg cttttaccaa accagcgcgg tccgctgcat agacaacgtt
     8221 gtccgccagt gccggatgaa gattggaata gaagttgcca atgccgctac caacggaagt
     8281 actccacgcc gtggtcggcg taaactggtt ttcaacggtt ggcaatgggg acatctttac
     8341 cacatcttct tcgctgttaa acagcgaaca gccgcttaaa agggtaacgg aaagcagtcc
     8401 tggcagcagt aatttacgca attgcatcgg gtccctctca gatggacaaa ttattaattt
     8461 tcatctgcat catttcgctc agtgccggag taacatcgct tttcacgcct gcttcccatg
     8521 cactacgcgc accttgctta tcacctttgc tcagcaatgc ttcaccacgc aggtcggcaa
     8581 caatggcagc ccacccttca cctttgatgg tatcaagggt tttcagcgcg gcatcagcct
     8641 gcttgagctg tacctgaacg cgagcaagac gcagatttat cacggctttg agattttcat
     8701 cgctcgtgtc tgccagcccc tgttgtaact gggcggcagc tttctctagt tcatttttgt
     8761 caacaaattg ctgcgcaagt tccaaagaag ccagcgcacc ataagtattt ttattttcag
     8821 cagcaaattt ttccgccgcc gggatgctat ccggtttgcc ttcgctcact gcggtaaccg
     8881 cattttgata ggcaagagaa gcggagcgtg cagaatcaac ctgatggctg ttccagtagc
     8941 gccagccaat cagtgcgcca acgcccaaaa tcaccccaac agccagtgct ttgccatttt
     9001 cagcaaaaaa gcgtttaacc gcttctacct ggtcgttttc gttctcgtaa atttccacgc
     9061 tgtccttctc cttccttaac ccagtaacgt gcgcaaatgc gcggctacgc tatcctgcgc
     9121 aactgccgtt tgctcaccag agcgcaaatc cttcactact gctgtgccgt tagtcacttc
     9181 agactcaccc agcaccacag caacgcgggc accccattta tcagcacggg caaactgttt
     9241 cttaaagttg ccgccgccgt ggttggtcat caatttcacg ccctgtaatt catcacgcag
     9301 acgctcagct aatgccatag ccgcagattg tgtatcagca cctgaagcca ccaggtatat
     9361 atcgacaata ggatcggctt taaattccgg attaacggcc tgtactaaca atacaagacg
     9421 ttcgaggccc atcgcaaaac cgacagccgg tgttgcacga ccgcccagtt gttccacaag
     9481 accgtcataa cgaccgcctg cacacacggt gccctgggag ccgagactgt tagtcaccca
     9541 ctcgaaaacg gtacggttat agtaatccag accacgcacc agacgctggt ttacggtgta
     9601 agcgatcccc gcgctctcaa gcagtttgca cagaccggca aaatgctcac gagattcctc
     9661 gtccagataa tcacctaatg ccggagcgtc gttgagaagc gcctgcactt ccggattttt
     9721 tgaatccagc acgcgcagcg ggttagtgta catgcggcgt ttgcagtctt cgtccagctt
     9781 ttctttatgc tgctcaagga atgccaccag cgcatcgcgg taattggcgc gtgcttccag
     9841 cgaaccgata gaattcagct caagagttac gtgttcggaa atacccagcg cgcgccacca
     9901 gcgggcggtg agcataatca gttcagcgtc gatatccgga ccttgcagac cgaaaacttc
     9961 gcagcccaac tgatggaact gacgataacg ccctttctgc ggacgctcgt gacggaacat
    10021 cggcccgata taccacagac gctgttcctg attgtacaga agaccatgct cgatgccggc
    10081 gcgtacacag cccgccgtcc cttcagggcg cagagtcagg ctgtcgccat tgagatcctc
    10141 aaaggtgtac atctcttttt caaccacgtc ggtgacttca ccaatcgcac gtttgaatag
    10201 cggggtctgc tctacaatcg gcaagcggat ttcactgtaa ccgtagctgc cgagcacgtt
    10261 tttcagtgtg ccttcaatgc gctgccagat ggccgtttcg ccaggcaggt aatcgttcat
    10321 gccgcgaatg gcttgaatgt tttttgccac gtttattctc tttctgaata taaaaatgaa
    10381 ccctcaacgc ttccctcaat gtttggggag ccatgcgggt tcaatcatac acgggaagcg
    10441 aggcgcttcc catcacgtta ttatttttca acctgctgaa cgtcaattcg acgcgcttca
    10501 tccagctgac tggctttcgc acgaatgcgt gcttccagct ggtcgatcat atcgttgttg
    10561 tccagacggt ctttgcgcac gccatcttca tagaggccgc ttttcttgtt gccgccggtg
    10621 acgccgagtg tagaaaccag cgcctcacct gggccattca ccacgcagcc gataatagaa
    10681 acgtccatcg gagtgatgat atcttccagg cgttgctcca gcgcgttaac cgtaccgata
    10741 acatcaaatt cctgacgcga acaggtcggg caggcgatga agttgatccc tcgcgaacgg
    10801 atacgcagcg atttcaaaat atcgaaaccg actttgatct cttcgaccgg atcggccgcc
    10861 agcgatacgc gcagcgtgtc gccgatgcct tcagacagca gcagacctaa accaatggcg
    10921 gattttactg ccccgctgcg tgcaccaccg gcttcggtga tccccagatg cagcggctga
    10981 tcgatctgtt ttgccagcaa acgataagac tcaacagcga ggaagacgtc agacgctttc
    11041 acgctgactt tgaactgatc gaagttcagg cgatcgagat gatcaacatg acgcatggcg
    11101 gattccagca acgcctgcgg cgtcggttcg ccatactttt cttgcagatc tttttccagc
    11161 gatccggcgt taacgccaat acggatcgga atgtttttat cgcgcgcaca gtcaaccacc
    11221 atgcgaatac gctcttcatt accgatattg ccagggttaa tacgcagaca atcgacgccg
    11281 tattccgcta ctttcagcgc aatgcgatag tcgaagtgga tgtcagccac cagcggcacg
    11341 ttaacccgct gtttgatgag tttgaacgct tctgccgcgt ccatcgtcgg tacggagaca
    11401 cggacgatat cagcgccaac gcgttccagc gccttgattt gattgaccgt tgcttcgaca
    11461 tctgtcgtac gcgtattggt catggactgt acggcgatgg gagcaccatc gccaatcggc
    11521 acattcccaa cgtaaatacg tgttgatttt ctacgttgaa ttggagcctg gttatgcatg
    11581 aaaaatctcc cgcgttaccc gtctgttact gcgccggtga ttgttcggca ttgagggtca
    11641 gacgcgcaac ctggttagtt ctgataaaac gactcagatc gacaggtttc ccttgatact
    11701 ggatctgtac tgcggctggc gcaccaattt tcagtttgta cggtgcctgg ccggttaagt
    11761 tcaaattacc gtctttacgc tgcataccgc taaacaattt tttaccggta gcatcagtga
    11821 cctccagcca gcaatcggca gtaaagttca tcaccagcgc attcggatca gccaccggcg
    11881 tggtcacgcc agcctgatcg gttggcaacg gcgcagcacc atctggcgtt gttgctgccg
    11941 ttggtgccag ggtcgcggcg gtatcaacat ttgcctgcga aggcgaaaca accgcattct
    12001 gttgcggatc aacagctggt gctggcgcag ttacggcagg tgtttgcgtg ttggttgcgg
    12061 tagtatccac agacgctggc ggcgtggacg ttgtagccgg gtctgtagtt gtcgacgtat
    12121 ttaacggaac actctgcccc tgctcgctat tactgctcag ttccgccgaa gattgatcgg
    12181 ccatagtggt gatctcttcc tgctgagctt tgtggtcttg ccaccaccag gcaccgctca
    12241 ggccgataac cacaaacaac accagccagg tgaaggtcat cagccagccg tcacgttttt
    12301 tgcggcgttt accgagggaa aaactctgca tcggcgcaac tttcgcagcc cgtagtggag
    12361 cctgcttttc cagccctagc agcagttctt cttctggaat atgtaccaga cgcgcataag
    12421 agcggatata tccgcgcagg aatgttgaag caagatcggc gggtgcctta tcttcttcaa
    12481 tgtcgcgtac cgtggaaacc ttcaggcaaa gtcgctcggc aacggcctgc tgactaagtc
    12541 ctagttgttc gcgagcatta cgcaggcgag cgccggtagt aagtgcttca ttttggtcgt
    12601 gcgtggcttc agtattcatt cgctgcaggt acgtttaaat gagaattgag atgccggtga
    12661 accatcatgc tcacccacac cgcgaaacat ccgttaagtt aaccgttatc atacagtata
    12721 agaccgtctg tgtgctcgtg acaaagccca cattcactaa ggctaactta ctgttgcatc
    12781 gttacatact gccttaaagt cagcaaaaac gcaccgttaa tattgaccag acaattgcaa
    12841 cttaatactt cattcataaa agattacgcc acggtacata aagtaaccgt ggcgtaatgg
    12901 ctatcagacc gctttaatgt cgatggcttc accctgcatc cgtttacgca gggtacgttt
    12961 cgtacggtcg ataacatcgc ccgccaactg accacaggca gcatcgatat catcaccacg
    13021 agttttacgc acaatagtgg tgaaaccgta gctcatcagc acttttgaga aacggtcgat
    13081 acggctgttc gaactgcgtc catacggcgc gcccgggaac gggttccacg ggatcaggtt
    13141 gatcttacac ggcgtatctt tcagcagctc cgccagttgg tgcgcgtgtt cagtgccgtc
    13201 gttaacgtgg tcaagcatca cgtattcaat agtgactcgg ccctgattgg cgttggattt
    13261 ctccagataa cggcgcaccg cagcaaggaa cgtttcgata ttgtactttt tgttgatcgg
    13321 cacaatttcg tcacgaattt cgtcgttcgg cgcgtgcagg gaaattgcca gtgcaacgtc
    13381 gatcatatcg cccagtttat ccagcgccgg aactacaccg gaagtagaaa gcgtgacgcg
    13441 acgtttagac aggccaaaac cgaaatcatc cagcatgatt tccatcgccg gaacgacgtt
    13501 gttcaggttg agcagcggct cgcccatgcc catcatcact acgttagtga ttgggcgctg
    13561 accggtgact tttgctgcgc cgacgatttt cgccgcacgc cacacctggc cgataatttc
    13621 cgacacccgc aggttgcgat taaagccctg ctgggcggtg gaacagaatt tacactccag
    13681 cgcacacccc acctgcgaag agacgcagag cgtggcacgg tcgtcttccg ggatatacac
    13741 cgtttcgacg cgctgatcgc caacggcgat cgcccattta atggtgccgt cggatgaacg
    13801 ctgttcttca accacttccg gtgcgcggat ttccgccacc tctttcagtt tgccgcgcaa
    13861 cactttgttg atgtcggtca tctcatcaaa gttgtcgcag caatagtgat acatccactt
    13921 catcacctga tcggcgcgga agggtttttc acctaaatct ttaaaaaact cccgcatctg
    13981 ctgacggttg agatccagca ggttgatttt tccatctttc gtggtgacgt tttcaggtgt
    14041 gactaattgt tcagacatat gctattccgg cctcgttatt acacgttatg gcccctggag
    14101 ggttgaaaaa agaaacgccc cggtgagcgg ctgctcgtcc gggggcgctg cattgtacaa
    14161 attctggcgc acggatgcca cgtttgcacg cggcatttac gaaattatta acgggtgcgc
    14221 gggcacactt cgccttcgcc aaagaaataa gcgatttcgc gagcggcaga ttcgacggaa
    14281 tcagaaccgt gggtaccgtt ttcggtcagg ctgtcagcgt aatcagcgcg cagagtacca
    14341 gccagtgcgt ttgccggatt ggtcgcgccc agcagatcgc ggtgacgctg aacggcgttt
    14401 tcaccttcca gcacggaaac cacgatcggg ccagaggtca tgaattcaac cagaccatca
    14461 aagaacggtt ttccatcgtg ttcagcataa aagccacgtg cctgttcaac ggtcaggtgc
    14521 agcattttgg tgccgacaat tttgaaccct gcagcttcaa agcgcgcaaa gatattacca
    14581 atgacgtttt ttgctaccgc gttcggtttg atgatggaaa aagtacgttc aatagccatt
    14641 tttacctctg taaattgttc tgttgttgtc tgtaccagcg tacgagatgg cgcggattat
    14701 aatgagcaac agggccgttg actattgatg aaggtaacat ttttttaaaa taaaatgagt
    14761 tttagcaaca atcagggaca aaacagacta ttgcatgaca aatttcactg tcgcgatttg
    14821 ccccacgtca tccatcacca gcaattgata atcaccttta tccgtcaaat gcagggtcac
    14881 gttgcgcccg cgttcagtta acggttcgcc attcagaaac caccagcgtt cacctgcccc
    14941 tccacttgat tgcaacggca aagtcgcttc cgctgcgccc ggtaaacgtt taataatcgc
    15001 gccatcgcga acgcctgtca gctgcagcgg gagctgggca tagtgaccgt atggcgggca
    15061 acttgtcgag gccggtggta agcgcacagc gcgacgttct gatgcgggca gccagggttc
    15121 cagcggtagc ggccagacat ttatcatttc ttgtcgcgct tgcgggcaat cagcggcaac
    15181 acgtttgcca ttttcatcca gccagatggg gaaacgaatg ccattaatgc cttcctgctc
    15241 cggcagtaat agagttggcg gctgactccc gtccagcagc caggttgcca ggcggcggcg
    15301 acagttaccg tcaccttccg gcaaagactg tccgcccggc cagcagataa cgccacgagt
    15361 gactgagttc gggcgcgggt cttccggcag attcgcactg cgcgacagta agatattatt
    15421 gacctgattc aacaatggta cggcactggc aaagccaaac tgaccaacaa cgggcgtgca
    15481 gtccggtctg ccagtccaga tcccaatgac atagcgagcg ttaaccccaa tcgcccaggc
    15541 gtcacgatag ccatagctgg tgcccgtttt ccatgccagt ggggcgacgc gcggcaaggc
    15601 actatccggc aagggttgcg cttcatcagc cataatccgg cgaatgatcc acgccgcccc
    15661 cgacgacatt aaaggccatt caagcagcgg atcgtcaggc tgtaagcgca atttgcctgc
    15721 cttgccgtgg cgagcaaacg cggtatacgc tgccgccata tcttccagtt ttgcaccagc
    15781 gccgccgaga atgagtgaaa gattcggcgc agcaccgttg ggcaaatata acggcaatcc
    15841 aacattgcgt aactttgccg caaaccgttt cggtccatag gcttccagca cctgcacagc
    15901 aggtaagttc agcgagcgca ccagcgcctc gctcatgctg atcgggccat gaaaaccgct
    15961 atcaaagtta cctggtcgat aatcaccggt gcgccggggg acgtcttgca gcagtgatgc
    16021 cgggtggatc aagccttcat ccagcgccag accataaaca aacggtttga gcaccgatcc
    16081 tggcgatcgg atcgcattga ccatatcaac atgaccaaag cgtgaatcat cgttgagatc
    16141 aaccgatccc acccagccgc gaacacgcat atcggtatga tcaaccacga tcatcgccag
    16201 tgagctgcgc ggtggcaacc gccctttcca gttttgcgcc agttcttcca gacgtcgttg
    16261 aagaccggca tccagcgtag taacgatttt gtcgcttttg cttttaccga gcatcatgcg
    16321 cgaaaacagc ggtgccagtt gcggcatttg tcggggtgcc agccagatgg gttcttccct
    16381 tgactctttt acctgctcac gggaccacac accttgcacg gccatccgtt cgagcacttt
    16441 attacgcgcg gcttcggcac gctccggcca acgatccggg cgcagtcggc tgggcgcttg
    16501 cggtaacacc gccagcattg ccgcctcgga atagcttaaa ttcgcaggcg attttccgag
    16561 ataagcccaa cttgccgcac cgatcccctg caacgtaccg ccaaacggag cgcggttaag
    16621 atacaagatc agaatttcac gcttagacaa atgccactcc agttgcaacg cgcgccagag
    16681 ctggagaatt ttgctaccaa atgttttggg gtgaggatca agcagacgag caacctgcat
    16741 agtgagcgtg ctgccaccag aaataacccg tcccgaagtg agatcttgcc atgctgcgcg
    16801 cgccaccgag aatggattca cccccggatg cttccagaac cagcgatctt cataattgat
    16861 cagcgcttca aggtaacgtg gagacacatc ttcgattgtt accggataac gccagatgcc
    16921 atcagcatcg gcgaagcgcc agagcggcgt accatcctgc gccacgacca ctcgtgcggg
    16981 attgacttca tgcagcggta gaggccagag tttatctgct ccccacgctg caagaaaaag
    17041 gagaaatggc acagctgcca gcgttatcca gcagccgcgt ttggttaaca agcgaagcat
    17101 ttacggtcgg acaatcagca gatcttcagc cgcgccggtc gcccgccatt ggggaacata
    17161 cattgattcc accatcggtt gcggtacctg atacgttccc ggcgtcaccg cccgcgccag
    17221 atacaccagc gttaccggtt ggtattcatc aacggcaacc gccgccacaa agcgatcgtc
    17281 acggaactca atgtgcttaa tgctcgcctg ctgcatctgg ttcagtaagt tttgcacttc
    17341 gtcaccactt tgctccaggc tggcgctacc gttcgccaga ttctgatttt ccagttccag
    17401 acccgcaggc agcagatcca cgactaacgc atccggcacg ctgttactgg cttttacctg
    17461 caaccagacc agcaccagat cgccgctacg taacgagtcc agcgatttgc tcttaccatc
    17521 agtaccaaga atatgacgct cgatttgcag cacattgttc gccggtaaag gtgcggattg
    17581 cggataaccg ctggcatcca tacgcaacca taacggctga tcgccactgt ttctcacctg
    17641 caaggtggca agttgatcgc tattcagatt gctgtttagc gttttctcgc ctgtcagcgg
    17701 ctcagctgag aaagaggttt gcgcctgcca tttacccggt aaatcctgaa tcgtacgggc
    17761 agccaggaac aacgcgttac tttcctgcgt cgatagccag cgttcaccaa acgcctgctg
    17821 cgaaagtgtg ttcagcaaag tgtactgctc atcgggtagc agtttatttt cttccagcaa
    17881 ggagagcatt aacgcgttgt cgcgcagtgg actaccgtaa tcacccagcc atatccgctc
    17941 atcactattt ctcggcgttt tcagcgccag cacaatcgct tcttcaccac gcgttgcatc
    18001 acccatggtt ttcagcgcaa tgccaagttg cagcagcggt aaaccagaag cggcatctgc
    18061 acgatgctcc cagatttcac gcagcgcacc cagtggtgct ttttgctgac gggccagcac
    18121 cagcgcagcg taagactgaa cggcgaattt actggctttg agattatccg cgtacgggat
    18181 cgacatcatg cccggatctt gtaaatagcg cagcagacgc tcattacccc ggttaatggc
    18241 gtctgtcggc acgctgtaac cctgttcgcc tgcgcggacc aggaaatcca tcacgtaagc
    18301 cgtcagccag tactcttcgt caccgttttt atcccacagc gcaaagccgc cgttatcacg
    18361 ttgcatttgc agcaaacggg aaatgccgat atcgaccgat gcacggcgtt tctcatcact
    18421 gtcgcctttg atgcccaacg cctgcagttg ggctgcgttg gtataaagtg acgggaacag
    18481 gccgctggcg gtttgctcaa gacagccgta cggatacgct tttaactctt tgatataacg
    18541 tgcaatgttc agcggtggtt tgccgctcaa caacaattgc ccttccagcg taacaggcga
    18601 gaagttttgc aatccatccg ccggaatcgc ccatgtctca ccaggctgta acgccgtacc
    18661 gtaattaacc gtttgtgccg ggaacgccgg acggacgccg attttccact gcttatgctg
    18721 atcggcaacg gtttcacccg gtaacgctaa cccgctaatg gtggcctgaa tttctccatc
    18781 gccataaccc ggcaatgctc gcaccgggat aaacagcgta gtacgcacac ctggcgctaa
    18841 ttcaacggct gcgggtgaat cgctgaccag ttcaagcaaa ccactggcgg tcagggcaac
    18901 gttcagtttt tgcggtttat cggtaagatt agtgatatcc agcgtcagac gcgaggtatc
    18961 gccactcgcc ataaagcgcg gcatgttcag ttcagcaatc accggtgcgg caactatcac
    19021 tttgctttcg ttgctaccga aatcatctgc cgtccaggct tgcgccatga cgcgcaattc
    19081 accgttaaaa tcgccaatcg gcagtgtaac cgagccttcg ccctgttcgt tgagcgttac
    19141 cggcagcgcc tgctgcgcga caatattgac gtgattgacc agcggtttac caccacgttt
    19201 cagctcatca ccatcgccac cgaaacgcag agctgccaga cgcccctgac cttcaataac
    19261 ctgaccgtaa atatcgtaaa tgtctgcgcc atagcgtttc tgaccaaaga acgcctgcca
    19321 cggatctggc gtgacgtagt cagtaatatt cagcacacca ctatcaacgg cagacaccag
    19381 cacattcacc tgtttaggct tctcgccatt tttagtgctg gctttaattt tcacggttaa
    19441 tggttgattg ggacgcattt ttgctggtgt ttccagcgcc agatcgaggc gacggttttc
    19501 atcgccaagc ggcagatgca acacaccaac cgcgcgtttt ggcgtcgcgg agcgagattt
    19561 atcgctagga cgtaccacca gcgtacttaa atacagatca tgacgattcc aggttttatc
    19621 gaccggaatc gtcagatcca gcccttgagc cggaacatca atctcttgcc accacagcgg
    19681 cccttcactg gactcgacca tcgcataacc tttacccgcc gttggcgcgg cgatatgcaa
    19741 cttaatggtg tcgccagggc gataactggc tttatccagt ttcagcgtga cacggtcggg
    19801 tcgcactgcg ccgctaccgt cgctgttgtc ctgccagcta tagccagccc agaaacgaac
    19861 actactgacc gcttcattcg gcgctttgac ttccagacga taagcgcccc actctaccgg
    19921 aaaactgacc ttgccggttt cgtccgcttt cagatccaga gtttgttcat tttcgatcag
    19981 atctttttga tcaaactgtg actgccagcc ttcatcttct gaccagttcc agtagtaatc
    20041 gcggcgttcg cgaatcaggc gcacctgcaa gcccgacacg gcttttttca cgccttgtgc
    20101 atcgctataa acgatgtcaa aagcggcgtt actgccttca tcaacaatgg gctgtttcac
    20161 cgtgctgtca gtgcgataat cgtaaaccga tttcaaggcg aactgcggac ggagccccgg
    20221 caatgcattg gcaggccaga tagcctgctc agcgcggcgc gtcaccgggc gaccgcccga
    20281 ttccagcaaa ctgccctgga aaataacctg caatggggaa tgcgtttcct tccactggct
    20341 ttctgtagaa acttcgccgc gccctttatc atccagcgtc aactgaactt catccagcgt
    20401 gcgggaaagg ttttcggcag ctatatcgcc gaattcaaaa ccaggtaagg ctgacacagc
    20461 ctcacgcagt gggcgcagga aaagttgccc ttgcaaagta ttaccattag caggcgcacc
    20521 gtacaggtag tatcccacca cggagaattt cacttcatca ttcggcgtaa gcggggtttt
    20581 ctcaccggtc agattcagcg ccatacgctc tggcataaaa tcttcgacgt ggaaatccca
    20641 catccggtac tggttatcgc ccgtgttggc gcgaatatgc cacataccgg ttgccgcatt
    20701 gctatcgagt ggccaggtaa agtggtagag gccattctcc ggctgactaa cgacgctcct
    20761 gagtacctgc ccgtcaggtt taatcacgtc taacttgatg ggttgatcgg gcaatgcttt
    20821 accgtctgca tcgcgcagta aaccattgag gattaccgtt tcacctgggc gataaagatc
    20881 gcgtgggcca aacatgaaaa actgtttgct atagcctggc gcgccagcaa tgttaaattc
    20941 tgctaagtcc agcgccggaa gttttaaatc gagtagcgtt gtctgaccgt ctttacgtgc
    21001 cagcagtaat gccgcatttt tatcattttc cagctgcaca tgcccctgag cgtcactggt
    21061 tgcctgagtc agagtctgcc ctttctcatt taataaagag acttcaattc cttgctgggc
    21121 cgcgccgttt tccagacttt gggtaaagat atccagacga ttgtgataac ggtgagctga
    21181 aacgccgata tcacttaacg taaacagcgt cgcgggatta ctgtaatcgt aacgtccagc
    21241 ctgattcatc acagccagat acacgcccgc ctgctgaagc ggtttgatat cgcccagcgg
    21301 cagcaataat ttttcacggg tgttacgcgc aggattgaga tcaaaccgtc cggtgtagac
    21361 cagatccgcc atctgcagca gtttgtctga ctgccagttc gccagcgaat tgcggtattc
    21421 ccattggcta atgaatgctg gcagagattc tggcttaacg cggaagaagt taacatcgac
    21481 attattaacg ttgagcgcca ttaccggcag cccttcaacg actttgccag gcagcagcga
    21541 accacggctg gcaaaaccga cgctgggttg gatgtcgcgg gtagttatag ttttttcgta
    21601 atctttactg aaggttgcat tgttgagtgc tttgacctcc ttgccaatag taacgatcaa
    21661 atcacgtttc ggttcgaggt ggcgtaaacg tagctcttta agattatctg acagctccca
    21721 ggcaccatcc actttgccgc tttttttatc gacgacatga ataacgcgtg agaaatcctg
    21781 atccgggtcg agagggatgg agaacgtcag caccagcgtg gctgcaccat caagttggac
    21841 ttcagagaga tccagcaatg tcagcacctt accggcactc tgttgggcca gtttttgtct
    21901 ctccggcacg gagagttttg ctgaactcgc gttttctgaa gaggccgctt tagtaacttc
    21961 agaaggcgca tcttttttca ccgctgttgg cgcgttatcg ttgttgtcgc accctgccag
    22021 cgccagcatt agcatgcagg cggctacgcg taactttttc atccctgcca caatggcccg
    22081 ttagcaacgt cgaataatta ttatgcgtga gaatttacgt tatgtaattc agtatcacgc
    22141 ccatacaatc cgaattttag tgagaattgt ggctcagaca gccaaatcag cctctttcgc
    22201 ttgtcgcttt tcactaaaca tccgacaatt tagcctaacc ccggcaaaaa tggagatgcc
    22261 tatgtccacg acatggtttg taggagccga ctggctcgcc gaacatattg atgacccgga
    22321 aattcagatt atcgatgccc gcatggcgtc gcctggacag gaagatcgta acgttgctca
    22381 ggagtatctg aatggacata ttcccggcgc agtgtttttt gatatcgaag cgctttctga
    22441 tcacacttcc ccgcttccgc acatgctgcc gcgcccgaaa acgttcgccg tggcgatgcg
    22501 tgaattaggc gttaaccagg ataagcacct gattgtctat gacgaaggta atcttttctc
    22561 agccccacga gcatggtgga tgctgcgcac ctttggtgta gagaaagtgt cgattctggg
    22621 gggtggactt gcaggctggc agcgcgatga tctgctgtta gaagaaggtg cagtagagct
    22681 gccggaagga gagtttaacg ccgcgtttaa tcctgaagcc gtggtgaaag taaccgatgt
    22741 attattggca agccatgaaa atacggcgca aattattgat gcccgcccgg ctgcacgttt
    22801 taacgcagaa gttgatgaac ctcgcccagg tttacgtcgc ggacatattc ccggagcact
    22861 gaatgttccg tggacggaac tggtgcgcga aggcgaacta aaaacgaccg atgaactgga
    22921 tgcgatattt tttggtcgcg gcgtcagcta cgacaaacca attatcgtca gctgcggctc
    22981 tggtgtaacg gcagccgtgg ttttgttagc actcgcgacg ctggatgtgc caaacgtgaa
    23041 actgtacgac ggcgcatgga gtgaatgggg cgcgcgggca gatttaccgg ttgagccagt
    23101 gaaataagta ttttacaggc aataaaaaac cgccgaattt ggcggttttt tattgctggt
    23161 ctggttcgcg gcctttccag caggttgtat taccgtagta atgcaagcgc gtctcagcgg
    23221 agacaatact cgccagtaac tctctttttg tcaagcaaaa gagagttatt attgttctgt
    23281 tagtatatta tccactgcgg ccctttccgc cgtctcgcaa gcgggcgctg gcttaaggaa
    23341 aggatgttcc gcgaccgtta gagcaagcgc gtctcagcgc ttgctatcgc ggcaatatcg
    23401 ccagtggtgc tgtcgtgatg cggtcttcgc atggaccgca caatgaagat acggtgcttc
    23461 tgtatcgtac ttattgtttc tggtgcgctg ttttcccaag taaataataa ccggagtctc
    23521 tccggcgaca atttactggt ggttaacaac cttcagagca gcaagtaagc ccgaatgccg
    23581 ccctttaggg cggcatattt tagattatcc ggttttgttt aaagtcacgc aaaaaacctc
    23641 cccagcgacg ttcatagaat ggcacaatat gttcggtaat aaagtggcta attccttttt
    23701 cccctttttt cacctgacaa atatcgattg gttcatcgcc aggtaatgta tcggtcgcta
    23761 cacttcccgt cgcctgaata atttcttcga tatcaccatc ggcttcaatg ccaataaata
    23821 aattaggctg tgcctcttcg ttctctttaa ttgaacaaat aaaagcacgc ttcaccggct
    23881 taatggtttt aaataaggtg gtgagtgaat caatcatttg tgctggcggc tctgcaactt
    23941 ccgataatat cagcgattca ccgccttcca ggatttcctg gctgctcagc ggatttccct
    24001 cttcaccaat caacaaactg atttcacgcg gcataaattc tttaccggtc ggcagtttgg
    24061 cattaaggaa gagcgtttcg ccaagggtca tctcaaacaa tgtgcgaacg ggcattacga
    24121 caaatgcctg ttcgtcttca accgcctgtt gaagcgcttc taacgaggtg aaaaaaggaa
    24181 tgacgctggt gccgtcttct ttttcccagt gctgtaaatc aagcgcacta tcttcaacca
    24241 cagcctcgcc ctgcgccgcc gtaccaggca cccagacggt ggattccagt agagtacgga
    24301 aaaaggccgg gcggtgtgcc ggttcggttg ctgctttttc cagcaggtct tcaagttcgt
    24361 tttttgtttc ggacataaga accacaattc attcaacgtt cggggcgcaa atgcctgatg
    24421 cgctacgctt atcaggccta caagggattc gcaatttgtt gaatttgcag aatttgtagg
    24481 ccggataagg cgtttacgcc gcatccggca tattagttta cgccgttaac agattagcta
    24541 tcgtgcgcac accaagtccc gtagcgcccg cagaccactg ttcaaccggc gctttacggt
    24601 aagtcgccga gcagtcgata tgcagccagc cttgctgata gttctcaaca aagtgcgaca
    24661 ggaagcccgc cgccgtgctc gcgcctgccg gatacgccgc gcttccggta ttgttcagtt
    24721 cggcaaagtt agacggcagc tggctgcggt ggaattccgc cagcggcaga cgccagaatg
    24781 gttcgttctc ttgtgaggca ctcgccagca aacgaccggc aagcgcatcg tcaaaactga
    24841 acagcgcgtg ataatcatta cccagcgcag ttttcgccgc cccggtgagg gtcgccgcat
    24901 caatgatcat ttccggtttc tgcgcactgg catcaatcag accatcggca agcaccagac
    24961 gcccttcggc atcagtgttc atcacttcaa cttttttacc gttgcgatag gtgatgatat
    25021 cgcccagctt gaacgcattg ccgctaatca ggttatccgc acagcagagg aacagcttca
    25081 cgcgcttgtt cagtccgcgc gtaatggcaa atgccagcgc cccggtaacc gttgccgcgc
    25141 cgcccatgtc cgacttcatc gagtccataa acgcagtctg tttgatgctg tagccgccgg
    25201 agtcaaaagt gataccttta cctaccaggc acgcgtacac tggcgcttct ttatcgccag
    25261 ttgggttgta atccagcgcc agcaataccg gagaacgttc tgaagcgcgt ccgacggtgt
    25321 gcagccccat ataaccttgc tcacgcagat cttcgccttt ggtgatccga taagtcacac
    25381 gatcgcccgc gacgttgctg atcagatcaa cagcacgctg tgccagttgc gatggtccca
    25441 attcttctgc cggtgcgttg atggtgtcac gcacccagtc gatgatcatc aggcggttat
    25501 ccagttcctg gcgctgggca tcgtccagat ccggccactc cactttacgc gtgcctttcg
    25561 gggctttgta accttgccag aatgcccagc agcgatccgc atcccagcct tcaccgctta
    25621 actgaacatg cttgatgccc agaccgtcaa tcttgcgcgc cgcacgctgg atcagcccca
    25681 gatcgtctgc cccgttcaaa tgcagggtaa tgccgtcatt attaatgctg taagttgctt
    25741 tttctcccca gcgcgcgtcg gcaggttggg tagagagggt aatcttcatc gcttctgtca
    25801 ttttagttat ccttctttgt aaaagggccg ccagttggca gccccaggat ttttccgcta
    25861 aatgattcgc gttgcaggaa ggcggcaagt gagtgaagcc ccaggagcat agataactat
    25921 gtgactgggg tgaacgagcg cagccaacgc atctgcggcg tgaagcatga cgcggaaatt
    25981 attcggcctc gtccagccag actaacaaaa tcgcttcgag gattttctcg ttggatgcct
    26041 gcgggtcgtc gtcgaaatct tccagatcgc aaatccactg atgcatatcg gtgaatcgaa
    26101 ccgttttcgg atcaagatca ggatacgcat cgtacagtgc ttcgccaatt tcgcggctat
    26161 cggtccactt aagtcccata ctaacctctg ttaatgctca cgcgcatggt tgatagtgta
    26221 acgcgggatt tcgactacta aatcttcgtc ggtaacgcgt gcctggcagc ttaaacggct
    26281 ttcgggctcc agtccccagg ctttgtccag catgtcgtct tcctgctctg agctttctgg
    26341 cagcgagtca aaaccttcac gaacgatgca gtggcaggtg gtgcaagcac aggatttttc
    26401 acaggcgtgt tcaatctcga taccgttacg cagcgctgcg tcgagaatgg tttcaccgct
    26461 attagcttcc agaacagcgc catcagggca gaggtcctga tgaggcaaaa taacaatctt
    26521 tggcatatta aacctcgtcc acggaatggc ctttcagcgc acgacgaacc gactggtcca
    26581 tgcggcgagc ggcgaaatcc tgggtttgtt tgtctacgtt tttaatcgct tgttcgatgg
    26641 cgtcaacatc atcgccctga gccacttcac tcaggtgagc ggcagcattg tcaatgacct
    26701 gacgctctgc ggcgcttaac agcgcggcat cagcagccag cgcgccgtgc agactttcca
    26761 gcacacgcgc cgcttctact ttttgttctg ccagcatacg ggcttttacg tcctgctcgg
    26821 catagctcat tgaatctttg atcatcgaag cgatttcgct atcggtcaga ccgtaagaag
    26881 gtttgacctg aatagacgcc tcaacgccgg tggatttctc catcgccgtc acgctcaaaa
    26941 gaccgtcggc atcgacctgg aacgtcacgc gaatatgcgc accgccagcc ggtagcgccg
    27001 gaataccacg cagcgcaaaa cgcgccagtg agcggcagtc ctgcaccagt tcgcgctcac
    27061 cctgcattac atggatagac atcgccgtct gaccatcttt aaaggtggtg aaatcctgag
    27121 cgcgggccac cggaatagtg gtattacgcg gaatcacttt ctccaccagg ccgcccatcg
    27181 tttcgaggcc cagcgacagt gggatcacat caagcagcag catttcgctg tccggcttgt
    27241 tacccaccag aatatccgcc tgaatcgccg cgccaatagc gacgacttta tccgggtcga
    27301 tggaagtcag cggtggacga ccgaaaaatt cgcctacccg ttcacgcacc agcggcacgc
    27361 gagtagaacc gccaaccatc accacttcca gcacttcatc agcttctacg cccgcgtctt
    27421 tcagcgcacg acgacaagcc agtaaggttc gttttaccag tggcgcgatc agttcattga
    27481 attgttcacg gctgatttcg ccctgccagc ccgcaacgtt aacggtcacg gagtccgcat
    27541 cgctcagcgc gattttggct gcaatggcgg catccagcag ttcacgctga acgcggttat
    27601 cgctacgatc aggaatgtcc gcctgctcgc gaatgtaatc cgccagcaga tggtcgaaat
    27661 catcgccgcc gagcgcggaa tcaccgccgg ttgccagcac ttcaaacacg ccgcgactta
    27721 agcgcagaat ggaaatatca aacgtcccgc caccgaggtc ataaacggcg atcacgcctt
    27781 cctgaccgga atccagcccg taggcgatag ccgcagcggt cggttcgtta agtaagcgca
    27841 gaacatgcaa ccccgccaga cgcgccgcgt ctttggtgcc ctgacgctgg gcatcgtcaa
    27901 agtacgccgg aacggtgata acgacaccat ccagctcgcc tgccagggct tcagttgccc
    27961 gcgccgccag tgctttgagg atgtccgcag aaacgcgcac cgggttcagc agccccgccg
    28021 ccgtttcaat cattggcagg ccgttttcgc tggcctggaa ttgataaggc aaatgcggat
    28081 agcgttgctg gatatcagcc agcgagcgtc ccatcaggcg tttaacagaa ctaatggtgt
    28141 tggcggtatc gagcgctgcg ttagtacgcg cgtcataacc caccgaatgc ccttgctgtt
    28201 gatagtgaac aacagatggc agcaggtgac ggccttcatg gtcggctaac gtttcggcct
    28261 gaccgctgcg cactgtcgct accagcgagt tggttgtgcc caggtcaata ccggccgcca
    28321 gacgacgctg atgcggcgca gcactcaaac caggttcact aatttgtaat aaggccatgt
    28381 ttagcttcca gaaattaaaa atcgagcagt ttttcttcga gttgttcggc actgcttcgc
    28441 agtttatcga gaaaacgcag cttacgcacg gtatccgccg ccgcgtccca cgtctcgttg
    28501 tctaactgtt caaccatcaa ctgatggcgg gtatcaaaca tctttttcac acgtttgata
    28561 aagctttcca gccgcgcttc atctttcgcc tgttcgatct cgtccagttc ttcgcgcagc
    28621 tccagctgtt ccatcaggaa cgcggtgtcg cgcacagtat gctgctcgct ggcgagatca
    28681 aaaccgtgca aagaaagcaa atattccgcg cgcattaacg gatgacgcag cgtttgccag
    28741 gcctggttaa tggttgcaga ttgctgtacg gcggcgagtt gttccgcctg gcttccgctg
    28801 gcgaatttat caggatgata ctgacgttgt agatcctgaa aacgcaggct cagtgcctgg
    28861 gtatcgagtt gataacgggc aggcaagcca aagagggtga agtaatccat aacattctca
    28921 gggctgcgat ccgccgcgat aacggcgaat caggtaaaac aaaccccacg cgcaggcgac
    28981 cacggtgggg ttatcggtat gcgcatcaaa cgtggaagct ttcgccgcaa ccacactcat
    29041 ctttaacgtt cgggttggtg aatttaaacc cttcattcag gccttctttt acgaagtcca
    29101 gctgcgtacc gtccagaaat tgcaggcttt tgccatcgac cacgactttc acgcctttgt
    29161 cttcaaacac gatgtcttcc ggcgtcggtt cgtcaacaaa ttccagtaca taagccatac
    29221 ctgaacatcc ggaggttctc acgcccagac gcaggccaaa ccctttgccg cggttagcca
    29281 gaaaggtatt tactcgcgct gctgcactgt cgctcagtgt aatcgacata accaaacctc
    29341 aactcttatt ttgcttcacg tttgctttta tagtccgcaa tggcggcttt gatcgcgtct
    29401 tctgccagaa tagaacagtg aattttcacc ggcggcagtt caagttcttc agcaatatcg
    29461 gtgtttttga tcgcctgcgc ttcgacgaga gacttccctt tcacccattc ggtgaccagg
    29521 gagctggaag cgatagcaga accgcagccg taagttttaa aacgcgcgtc ttcaatgata
    29581 ccttcatcgt tgactttaat ctgcaacttc atcacgtcgc cacaggccgg tgcacccacc
    29641 atgccgctgc cgacgttctc gtcgttgttg tcaaaggaac ccacgttacg cggattctcg
    29701 taatggtcga taactttttc gctgtaagcc attataaatt ctcctgattc cgataccgat
    29761 taatgatgag cccattcgat gctgttcaga tccacgccct gcttgtacat ttcccacagc
    29821 ggagaaaggt cacgcagacg accgatggat ttacgaacta actcgatggt gtagtcgatc
    29881 tcttcttcag tagtaaaacg acctaaagag aaacggatag agctatgtgc cagctcgtcg
    29941 ttcagcccca gcgcgcgcag cacgtaggac ggttcgaggc ttgctgacgt acaggcggaa
    30001 cctgaagaaa ctgcgaggtc tttcagcgcc ataatcagcg actcaccttc aacgtagttg
    30061 aagctgacgt tgagaatgtt cggcgcaccg tgttccaggt caccgttcag gtaaacttct
    30121 tcgatatctt tgatgccgtt ccacagacgg ttacgcaggc cgcgcagacg ttccatctcg
    30181 gtcgccatct cttcttttgc gatgcgatag gcctcgccca ttccgacgat ctggtgaaca
    30241 ggcagagtgc cggaacgcat accgcgctcg tgaccgccgc cgtgcatttg cgcttcgatg
    30301 cgtacgcgcg gtttacgacg tacatacagc gcaccgatac ctttcgggcc atagattttg
    30361 tgaccggaga aagacatcag gtcaactttc aactggctca ggtcgatagg cagtttgccc
    30421 acgctctggg ttgcatcaac gtgatagata atgccacgag cacggcacat ttcgccgata
    30481 gccgcgatat cctgcaccac gccgatttcg ttatttacgt gcatgatgga aacaaggatg
    30541 gtgtcgtcac gcatcgctgc ttcaagttct ttcaggtcga taatgccgtt acgctgcggt
    30601 gccaggtagg tgacttcaaa accttcgcgc tccagctgac ggcaggtatc cagtaccgct
    30661 ttgtgttcgg ttttgctagt gatgatgtgc ttgccttttt tctgataaaa gttggctgca
    30721 cctttgatcg ccaggttgtc agattcggtt gcaccagagg taaagacgat ttcacgcgga
    30781 tcagcgccga ccagatcggc aatctgatta cgggcgatat ctaccgcttc ttcagcctgc
    30841 cagccgaaac ggtgagaacg agaggccggg ttaccaaagg ttccgtccat cgtcatgaac
    30901 tgcatcattt tctcggcaac acgcgggtcc accggcgtgg ttgcggagta gtcgagataa
    30961 atcggtaatt tcattgctct ataaactccg tacatcactc aatgcaagga atcaggctac
    31021 cggctggatg tacgaccgtg tttacggagt atttagcact ccggcctgat tctgaattct
    31081 ttttattaag cgcgtaactt aacgtcgatc gcgtcttgtg tgcgggtgcg tggcgcgtcg
    31141 tgagtatgct gacgaccaga cacatccagc acttcctggt tattaaccag ttcgcctaaa
    31201 gtaatgttgt tgagaaaacc ggtgagacgg tcgctcaaat cacgccacag cgcgtgggtc
    31261 aggcatttat cgccgccctg gcagccgcct ttaccctgac aacgggtggc atctacagat
    31321 tcgtcaacgg cgctaatcac ttcgccaacg gcgatgctgc tggcatcttt gcctaacaga
    31381 taaccaccgc ctggtccacg tacgctggaa accagaccat ttttacgcag acgggaaaac
    31441 agttgttcca gataagaaag ggaaatgccc tgacgttcgg aaatatcagc caacggtacc
    31501 gggcccgctt cagagttgag cgcaacgtca agcattgcgg tcacggcata gcgcccttta
    31561 gatgtcagtc tcatgtctta cttcacctca aactcgcccc tgcccggggt tttttattgt
    31621 aaaagtgggg gtattgaata gcagggtcaa gtctgacatt cccgagtaaa ttggtcaact
    31681 atttacttga ctgatttagt cgggtattta accttcagtg ccattttttt atcgtggcgt
    31741 ttgtacctgt tgtcggatgc ggtgtgaaca ccttatccga cctacggttc tgtacattgt
    31801 aggcctgata agacgcgtta agcgtcgcat caggcaacta ctgttattcg gccttgttac
    31861 ctttattctg ctgctcaata gaagccagaa tcccgcgcag gatattcaat tcctggcttt
    31921 ccgggcgcgc acgggtaaac agacggcgca atttattcat cacctgcccc ggatggtttt
    31981 cacggataaa accggttgcc agcagcgttt gttccagatg accataaaaa cgctccagat
    32041 catcgaccag cggatacggc gtctcttcat gctcgacctg ctcgccgttt tcctgagttg
    32101 ccagccaggc catgcgcact tcataggcaa taacctgaac cgccatcgcc aggttcagcg
    32161 agctgtattc cgggttagcc gcaatcgcga catgataatg gcatttctgc aactcttcat
    32221 tggtcaagcc gacgcgctcg cgaccaaaca ccagcgccac cggggtattt gccgcttcag
    32281 cgacgctttt caggccgcat tcgcgcgggt cgagcatcgg ccatggcagc gtgcgggaac
    32341 gtgcgctggt gcccaccacc aagctacaac cggctaacgc ttcgtcgagc gtatcgacga
    32401 tgtgagcatt accaatcaca tcgctggccc ctgctgccag ggcaatcgcc tgggagtcgg
    32461 gtttcaccag tggattaacc agccacagat tggttaatcc cattgttttc atggcacggg
    32521 caacagaacc catattgccg gtgtgtgacg tctccaccag cacaattcga atattttgca
    32581 gcattgtctt tcttcatcta aagattattc acgcatctta tcataaaacg aagacagatg
    32641 ccgatctcgc tgctatactc tgcgccgttt tcccgttctt taacatccag tgagagagac
    32701 cgatgcatcc gatgctgaac atcgccgtgc gcgcagcgcg caaggcgggt aatttaattg
    32761 ccaaaaacta tgaaaccccg gacgctgtag aagcgagcca gaaaggcagt aacgatttcg
    32821 tgaccaacgt agataaagct gccgaagcgg tgattatcga cacgattcgt aaatcttacc
    32881 cacagcacac catcatcacc gaagaaagcg gtgaacttga aggtactgat caggatgttc
    32941 aatgggttat cgatccactg gatggtacta ccaactttat caaacgtctg ccgcacttcg
    33001 cggtatctat cgccgttcgt atcaaaggcc gcaccgaagt tgctgtggta tacgatccta
    33061 tgcgtaacga actgttcacc gccactcgcg gtcagggcgc acagctgaac ggctaccgtc
    33121 tgcgcggtag caccgctcgc gatctcgacg gtaccattct ggcgaccggc ttcccgttca
    33181 aagcaaaaca gtacgccact acctacatca acatcgtcgg caaactgttc aacgaatgtg
    33241 cagacttccg tcgtaccggt tctgcggcgc tggatctggc ttacgtcgct gcgggtcgtg
    33301 ttgacggttt ctttgaaatc ggtctgcgtc cgtgggattt cgcggcaggc gagctgctgg
    33361 ttcgtgaagc gggcggcatc gtcagcgact tcaccggtgg tcataactat atgctgaccg
    33421 gtaacatcgt tgctggtaac ccgcgtgttg tgaaagccat gctggcgaac atgcgtgatg
    33481 agttaagcga cgctctgaag cgttaatgac tcaggcgggt gatgtcactc acccgccctc
    33541 gcctttcagg cgctattccg aaatacttcc tcaccgcttt actttctttc gtcactctcc
    33601 caccatcttt ccccgattaa tggatgataa agaagtcaca aggaaaggtt atggcgctgc
    33661 cagtgaacaa acgcgttctc aaaattctgt ttattctctt tgttgttgcc ttctgcgttt
    33721 atttagtgcc gcgcgttgcc atcaacttct tctattatcc tgacgataaa atttacggtc
    33781 ccgacccctg gtcggcggaa tccgtcgaat ttacggctaa ggacggtact cgtctgcaag
    33841 gctggtttat tccttcttcg acgggccctg ctgacaatgc catcgcaacc atcattcatg
    33901 ctcacggcaa tgccggaaat atgtccgccc actggccgct ggtcagttgg ttacccgagc
    33961 gtaatttcaa cgtttttatg tttgattatc gcgggtttgg taaatcaaaa ggcacgccgt
    34021 cccaggccgg attgctggac gatacgcaaa gtgccatcaa tgtggtgcgc catcgcagtg
    34081 atgtaaaccc acaacggctg gtgctgttcg ggcagagtat tggcggggcg aatattcttg
    34141 ctgttattgg tcaggatgat cgtgaaggca tacgtgcggt gatcctcgac tccacatttg
    34201 cctcttatgc aaccatcgcc aatcagatga tccccggcag tggctactta cttgatgaga
    34261 gttacagcgg cgaaaattat atcgccagcg tcagcccgat cccgctttta ctcattcacg
    34321 gtaaagctga tcacgttatc ccatggcagc acagcgaaaa gttgtatagc ctggcaaaag
    34381 agacaaaacg gttgatccta atcccggatg gcgaacacat tgatgctttt tccgatcgtc
    34441 acggcgatgt ttatcgcgaa cagatggtgg actttatcct tagcgcgttg aatccgcaga
    34501 actaacccat gatcgctagc acgataatca ttcacaaaac caccttaaga catgctaatc
    34561 cactggtcag aacagtttaa gatgagaaaa attctgtgac gcttgccaac atttctgatg
    34621 attagcattc ccttcgccat ttacctgagc aaactttagc tattcttatc aattatgctt
    34681 atgggagatc tacagatgat gcctacgctt gctccaccat ctgtcctttc ggctccccag
    34741 cgccgctgcc agatcttgct gacgctcttt cagccggggt tgaccgccac catggcaacc
    34801 ttcagcgagc ttaatggtgt ggatgatgat attgccagtc ttgatatcag cgaaacagga
    34861 cgggagatcc tgcgctatca tcaactcaca ctgacgactg gttatgacgg tagctaccgg
    34921 gttgaaggta cagtgcttaa ccaacgtttg tgtttatttc actggctacg acgtggtttc
    34981 cgtctgtgtc cgtcatttat taccagccaa ttcacccccg ccctgaagag tgaactgaag
    35041 cggcgcggaa ttgcgcgtaa cttttacgac gataccaatc tacaagcgtt agtgaatctc
    35101 tgctcccgac ggctgcaaaa acgctttgaa acgcgcgata ttcatttcct gtgtctgtat
    35161 ctgcaatatt gtttgctgca acaccacgct ggaattacgc ctcagtttaa tccgctccaa
    35221 cgtcgctggg cggaatcctg ccttgaattt caggtagcgc aggaaattgg acgccactgg
    35281 cagcgtcggg cgctccagcc tgtaccgcct gatgagccac tgtttatggc attacttttt
    35341 tccatgttgc gggttcccga tccattgcgt gatgcgcatc agcgagacag acaattgcgt
    35401 cagtctatca aacgtctggt aaaccatttt cgtgagctgg gaaatgttcg tttttatgat
    35461 gaacaggggt tatgcgatca gctttatacc cacctcgccc aggcgttaaa tcgcagtttg
    35521 tttgccatcg gtattgataa taccctgcca gaagagttcg ccaaactgta cccacgcctg
    35581 gtgcgcacca cccgcgcggc gctggccgga tttgaaagtg aatacggcgt ccatctttct
    35641 gatgaggaaa gtggtctggt cgcggtgatt ttcggtgcct ggctaatgca ggaaaacgat
    35701 ctgcatgaaa aacagattat tcttcttacc gggaatgata gcgagcgaga agcgcagatt
    35761 gagcagcagt tacgcgaact aacgttactg ccgctcaaca ttaaacatat gtcggtaaag
    35821 gcatttttgc agacaggcgc tccgcgcggc gcggcactga ttattgcgcc ttataccatg
    35881 ccgttaccgc tcttttcacc accgctgatc tatacggacc tgacactgac aacacatcaa
    35941 caggagcaga tccgcaaaat gctcgaatca gcatgaggga acaactttcg ggcgcaaaaa
    36001 cattgccgga agcgccacca gcgccattac ccagaacacg ccgtggccca gatattgata
    36061 caggaaaccg gcgaaaacgg tcatgatagc tatactgccg cccatcgcga cggcagagta
    36121 aaccgcctgt aaacggatga cttcgctacc ctggcgagcg gcaatatagc gcatggcggc
    36181 caggtggcag accgtgaagg cgccgcaatg cagaatttgc accactatca accacggcaa
    36241 cgccgtagtt gctcccataa tgccccagcg cactacgccg caaatcgccg agatcaacag
    36301 catatcgcgt gcactacaac ggcggaaaag tttattactc agcgcaaaga taatgacttc
    36361 cgccaccacg cccagcgacc acaaataccc caccgccgag gccgagtagc cagctgcctg
    36421 ccagtaaatg gcgctaaaac cgtaataggc cgcatgtgcc ccctgcaata aacaaacgca
    36481 ggccagaaag cgccagttct gaagaaccag cgccaaccac gctgaccaac cggtgctctc
    36541 ctgctggcgg cttgcccctt gtggctgaat cgtcggacgg atgagaaagc cgagcagcat
    36601 agatgccacg cccaatgtta acagcgcgag gatcacctga taatcaaaca tagtgaccag
    36661 tttgcccgtc agcgccgagc caatgacaaa cgccaccgag ccccacagtc gcactttgcc
    36721 gtaatcaagc gggaactgct tttgccacgt attcgccagt gcatcggtca acggtaccag
    36781 cggtgagaaa aagaggttaa agccaatcat caccagcatc agccacgcta cgtgcgcccc
    36841 cgcccagaag gcgacagcaa agagaagtgt catcattgcc agcacgcgca aggcggaaat
    36901 caggcgagaa ggatcgctga cgcggggcgc gatgagcaaa ctcccgagaa aacgggcaac
    36961 cagacctgcc cccaataaca ggccgatggt ttctggcgtt aaaccaatcc ctttaagcca
    37021 gacgctccag aaaggtagaa aaatgccgta actaaaaaag tatgtgaaat agccgagcgc
    37081 caaccagcgc gtggattgca aaaccatgag tccctcccgt caggaggcgt tagtctgggg
    37141 ttaatcgaat gttggtgcaa gttgaaaaat aagaatattc gagcctgctt cccgatgtct
    37201 gtaacgccag ttcacaagca ctaaaaaact gcgatccgcg acgcatgttg caaaaataat
    37261 gcgtaattat gccgttacgc ttgccaaacg ttcctgcaca atggcgatga aatcgcgtaa
    37321 tgccggcttc atctcccctt tcttccacgc catcagtaaa gcaatggaag gcacatttcc
    37381 ggcaatggga cgaaaaacaa cctgtccggt attaaaatta ttcatataac cgggtatcaa
    37441 agtgacgccc agccccatgc ccaccagatt catggtcacc agaatattcg ttgccacctg
    37501 gacgatattt ggctggctgt tttcttgcgc aaaccacgct ttaacgatcg gcgcaagcga
    37561 accggaatac gccggatcgg tactgacgaa attcacgcca tccagttgcg cggcggtgat
    37621 ctctttttca tgtgctaaag ggtgatcaac cggtaacaca accactaatg gttcgtcaaa
    37681 aagctccaga taatcaatct ccgggctata aacaggatgg cgcattaagc cgacgtcgag
    37741 ttcaccacgg cgaatttttt cctcctgttg cgtggtgatt aaactcacca gctcaatcaa
    37801 ggtgtctggc tgtctgagac gaaacatcgg taatactttt ggcagtaaat tcacttccgc
    37861 cgatggcaca aagccaatgg ttaattgtct gtcttcctga acagttttcc gcgcccgtaa
    37921 tttggcattt tccgcttgtt cgaggattgc cagcgcgtcc tggagaaaac attctcccgc
    37981 cgccgtcaac gcgactttgc gcttatccct caccagtaac ggaacaccga cacagttttc
    38041 aagatcgcgg atctggctgc ttaacgaagg ctgtgaggta tgcagttttt ccgccgcacg
    38101 ggtaaagttc agtgcctgcg ccactgcgac gaaatagcgt aaatgccgta gttccatcac
    38161 cttccccttg ttatcgaaaa aacgtctcag ctggtagaaa ttaactattt cacatattag
    38221 caaccaacca gcaacatcct tatggcacaa aaatagaagg tcaatacatc ttatctttca
    38281 ggattaaaaa atatgaccac accctcagat ttgaacattt accaactgat tgacacccaa
    38341 aatggtcggg tcactccgcg tatttatacc gacccggata tttaccaact ggagcttgag
    38401 cgtattttcg gtcgttgctg gctatttctc gcccacgaaa gccagatccc aaaacccggt
    38461 gatttcttta acacctacat gggagaagat gcggttgtcg tagtgcgtca gaaagacggc
    38521 agcatcaagg cgtttctcaa ccaatgccgc caccgggcca tgcgtgtgag ttatgcagat
    38581 tgcggcaaca ctcgcgcctt tacctgcccg tatcacggct ggtcttatgg cattaacggc
    38641 gagttgatcg atgtaccgct ggaacctcgc gcctacccac aagggttgtg taaatcccac
    38701 tgggggctaa acgaagttcc ttgtgtggag agttataaag ggctgatttt tggcaactgg
    38761 gataccagcg caccgggcct gcgtgattac cttggtgaca ttgcctggta tctggatggc
    38821 atgctggatc gtcgcgaagg cggcaccgaa attgtcggcg gcgtacaaaa gtgggtgatc
    38881 aactgtaact ggaaatcccc ggcagagcag ttcgccagtg accaatatca tgctctgttc
    38941 agccatgctt ctgccgttca ggtattaggg gcgaaagatg atggcagcga taagcgtctc
    39001 ggtgatggac aaaccgcccg cccggtgtgg gaaaccgcca aagatgcgct gcaatttggt
    39061 caggacggtc acggtagcgg tttcttcttt actgaaaaac cggatgctaa tgtctgggtc
    39121 gatggcgcgg tttccagcta ttaccgcgaa acctatgccg aagcagaaca acgtttaggt
    39181 gaagttcgcg ccctgcgcct ggcgggtcat aacaatatat tccccacgct ttcatggcta
    39241 aacggcactg ccacactccg cgtctggcat ccgcgcggcc ctgatcaagt tgaagtgtgg
    39301 gcgttctgta ttactgacaa agccgcctcc gatgaagtta aagccgcttt tgaaaacagc
    39361 gccactcgtg cttttggtcc tgctggtttt ctcgagcagg atgactcgga gaactggtgt
    39421 gaaatccaga aattgcttaa aggccaccgc gcccgcaaca gcaaactgtg tctggaaatg
    39481 gggcttggtc aggaaaagcg ccgcgacgac ggcattcctg gcattactaa ctatatcttt
    39541 tcagaaactg ccgctcgtgg aatgtaccaa cgctgggccg atcttctgag tagcgaaagc
    39601 tggcaggaag tgctcgataa aaccgccgct taccagcagg aggtgatgaa atgagtgcgc
    39661 aagtttcact agagttacat ctccgcatta gccagtttct ctttcacgaa gccagcttac
    39721 tggacgactg gaaatttcgt gactggctgg cgcagctcga cgaagagatt cgttacacca
    39781 tgcgcaccac agttaacgcg caaacacgcg accgccgcaa aggcgtccag ccaccgacaa
    39841 cctggatttt taatgacacc aaagaccagc tggagcggcg aatcgcccgt ctggaaacgg
    39901 gcatggcctg ggcagaagag ccgccgtcac gcacccgtca cttaatcagc aactgccaga
    39961 taagcgaaac cgacatccca aacgtatttg ctgtgcgggt aaattatctg ctttatcagg
    40021 cacaaaaaga gcgcgatgaa acattctatg ttggaacgcg tttcgacaaa gttcgccgtc
    40081 tggaagatga caactggcgc ttgctggaac gggatatcgt cctggatcaa gcggtaatca
    40141 cttcccataa cctgagtgta ctgttctgat gaatcgaatt tatgcgtgtc ccgttgcgga
    40201 tgtgccggag ggtgaggctc tccggatcga tacctcgccc gtcatcgccc tgttcaacgt
    40261 tggcggcgag ttttatgcca ttaacgatcg ttgcagccat ggtaatgcgt cgatgtcaga
    40321 agggtatctg gaagatgacg ccacggtgga gtgcccgcta cacgccgcca gtttttgcct
    40381 gaaaacgggg aaagcgttat gcctgcccgc caccgatccg ctcaccactt atccagtaca
    40441 cgttgaaggt agtgacattt tcatcgactt accggaggcg cagccatgag cgatctgcat
    40501 aacgagtcca tttttattac cggcggcgga tcgggattag ggctggcgct ggtcgagcga
    40561 tttatcgaag aaggcgcgca ggttgccacg ctggaactgt cggcggcaaa agtcgccagt
    40621 ctgcgtcagc gatttggcga acatattctg gcggtggaag gtaacgtgac ctgttatgcc
    40681 gattatcaac gcgcggtcga tcagatcctg actcgttccg gcaagctgga ttgttttatc
    40741 ggcaatgcag gcatctggga tcacaatgcc tcactggtta atactcccgc agagacgctc
    40801 gaaaccggct tccacgagct gtttaacgtc aacgtactcg gttacctgct gggcgcaaaa
    40861 gcctgcgctc cggcgttaat cgccagtgaa ggcagcatga ttttcacact gtcaaatgcc
    40921 gcctggtatc ctggcggcgg tggcccgctg tacaccgcca gtaaacatgc cgcaaccgga
    40981 cttattcgcc aactggctta tgaactggca ccgaaagtgc gggtgaatgg cgtcggcccg
    41041 tgtggtatgg ccagcgacct gcgcggccca caggcgctcg ggcaaagtga aacctcgata
    41101 atgcagtctc tgacgccgga gaaaattgcc gccattttac cgctgcaatt tttcccgcaa
    41161 ccggcggatt ttacggggcc gtatgtgatg ttggcatcgc ggcgcaataa tcgcgcatta
    41221 agcggtgtga tgatcaacgc tgatgcgggt ttagcgattc gcggcattcg ccacgtagcg
    41281 gctgggctgg atctttaagg aagcacgatg aaagaaaaaa cgatcattat tgtcggtggc
    41341 gtgcaagcgg cggcaatggc tgcggcctcg ctacgccagc aagggttcac cggtgagctg
    41401 catctgtttt ccgatgagcg acatcttcct tatgaacgac ctccactctc gaaatccatg
    41461 ttgctggaag attccccgca gttacagcag gtgttacccg ctaactggtg gcaggaaaac
    41521 aatgttcatc tgcattccgg tgtaaccatc aaaacgctgg gtcgcgacac acgagagtta
    41581 gtgttaacca acggcgaaag ctggcactgg gatcagcttt ttatagcaac cggcgcggca
    41641 gctcgaccgc tgccgttgct tgatgcactg ggagaacgct gctttaccct acgccatgcc
    41701 ggtgatgccg ccagactgcg agaagttctg cagcccgaac ggtcagtcgt gattgtcggt
    41761 gccggaacta ttggtctgga actggctgcc agcgccacgc agcgcagcgc agatgtaagg
    41821 tgacagtgat tgaactggcg gcaaccgtca tgggccgtaa tgcaccaccg cccgtgcaac
    41881 gctatctttt acagcgccac cagcaggctg gtgtgcgcat tctgctcaat aatgccattg
    41941 aacatgtagt cgatggtgaa aaagtagaac tgacgctgca aagtggggaa acgcttcagg
    42001 ctgatgtggt gatttacggt attggtatca gcgccaacga gcaactggct cgcgaggcca
    42061 accttgatac tgccaatggc attgtcattg atgaggcttg ccgcacctgc gatcccgcga
    42121 tctttgccgg tggcgatgtg gcaatcactc gtcttgataa tggtgcacta caccgctgtg
    42181 aaagctggga aaacgccaat aaccaggcgc aaattgccgc tgccgcaatg ttagggctac
    42241 cgctaccgct actgccgtgg ttctggagcg atcagtacag tgataactta cagtttattg
    42301 gcgatatgcg tggcgatgac tgaggtagcc tgagtttaac ggacactcct tcctgaaata
    42361 gaatggcatc a
//
LOCUS       DAJVSY010000011        40982 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.011, whole genome shotgun sequence.
ACCESSION   DAJVSY010000011 DAJVSY010000000
VERSION     DAJVSY010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 40982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40982
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.011"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..334)
                     /locus_tag="OQQ19_000579"
     CDS             complement(<1..334)
                     /locus_tag="OQQ19_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
                     /protein_id="HCS1802323.1"
                     /translation="MNKEEQYLLFALSAPMEILNQGCKPAHDSPKMYTGIKEFDLSSS
                     WGINNRDDLIQTIYQMTDDGHANDLAGLYLTWHRSSPEEWKALIAGGSERGLIYTQFV
                     AQTAMCCGE"
     gene            complement(415..1842)
                     /locus_tag="OQQ19_000580"
     CDS             complement(415..1842)
                     /locus_tag="OQQ19_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HCS1802324.1"
                     /translation="MKNCWKILDIEETTDVDIIRRAYLALLPSFHPETEPQGFKQLRQ
                     AYEEALRIAQSPAKSVWQPEEYEVAEHEILLAFRALLASDSERFLPSAWQRFIQQLNY
                     CSMEEIDELRWSLCTIAMNTAHLSFECVVLLAERLRWLQEENVGEIDEEELESFLYAI
                     AKGNVFNFQTILHLPVAVQNDTIDFYQMFARIWSSHPEWLTLYLAQHRAVIIPDDAKL
                     HRNLLRWYSAGRLDIPELLDYARSWREAEPDNEDARYYEYAQRVYCGEGESLLAELCD
                     YWREYPSTQADALILQWCRQHRVDYYPLVVMMIEARELVNDQGKQLLYVPGDSARTRF
                     HLYEILSDEKLSALGRSLVEMVLHKGRKPRISLTRDTEHLLWPLYLVAKQLVQASQPT
                     EESLMPIVSRLDAEDRCPLEALIIRRLLIQAANFTEKQTVEPEPQPQPMPVDDGGPGC
                     LGVIKIIFYIFIFAGLIGKILHLFG"
     gene            complement(1839..2546)
                     /locus_tag="OQQ19_000581"
     CDS             complement(1839..2546)
                     /locus_tag="OQQ19_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
                     /protein_id="HCS1802325.1"
                     /translation="MDMGSQKILFALSTPMEIRNECCLPSHSSPKMYLGTCFFDLSSS
                     WGIDDRDDLLRTIHRMIENGHAARLAGFYHRWFRYSPCEWRDYLAELNEQGQAYAQFV
                     ASTAECCGEGGIKAWDYVRMGFLSRMGVLNNWLSEEESLWIQSRIHLRALRYYSNWRQ
                     YFAGYTFGRQYWQSPEDDHLPLLREFLARKEYDDSGNDMFYQLFASDDAYYPTLSWQP
                     LADYPTCPETLKDMSDL"
     gene            2709..3686
                     /locus_tag="OQQ19_000582"
     CDS             2709..3686
                     /locus_tag="OQQ19_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415177.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEL1-like repeat protein"
                     /protein_id="HCS1802326.1"
                     /translation="MIFTSSCCDNLSIDEIIERAEKGDCEAQYIVGFYYNRDSAIDSP
                     DDEKAFYWLKLAAEQGHCEAQYSLGQKYTEDKSRHKDNEHAIFWLKKTALQGHTFASN
                     ALGWILDRGEDPNYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYK
                     QAALQGHSDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGE
                     GVDQDYKQAMYWYLKAAAQESVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDA
                     TAWYNLAIMYHYGEGRPVDLRQALDLYRKVQSSGTRDVSQEIRETEDLL"
     gene            complement(3756..4238)
                     /locus_tag="OQQ19_000583"
     CDS             complement(3756..4238)
                     /locus_tag="OQQ19_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon-containing protein"
                     /protein_id="HCS1802327.1"
                     /translation="MNKVAQYYRELVASLSERLRNGERDIDALVEQARERVIKTGELT
                     RTEVDELTRAVRRDLEEFAMSYEESLKEESDSVFMRVIKESLWQELADITDKTQLEWR
                     EVFQDLNHHGVYHSGEVVGLGNLVCEKCHFHLPIYTPEVLTLCPKCGHDQFQRRPFEP
                     "
     gene            4473..7055
                     /gene="leuS"
                     /locus_tag="OQQ19_000584"
     CDS             4473..7055
                     /gene="leuS"
                     /locus_tag="OQQ19_000584"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008456064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HCS1802328.1"
                     /translation="MQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYP
                     SGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTY
                     DNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCP
                     NDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKS
                     MQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNP
                     ELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGA
                     VMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDH
                     EAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQL
                     PVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPEY
                     KEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQ
                     GMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSK
                     NNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTA
                     KGDVAALNVDALTEDQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP
                     TDGEQDRALMQEALLAVVRMLNPFTPHICFTLWQELKGEGDIDNAPWPVADEKAMVED
                     STLVVVQVNGKVRAKITVPVDATEEQVRERAGQEHLVAKYLDGVTVRKVIYVPGKLLN
                     LVVG"
     gene            7070..7651
                     /gene="lptE"
                     /locus_tag="OQQ19_000585"
     CDS             7070..7651
                     /gene="lptE"
                     /locus_tag="OQQ19_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HCS1802329.1"
                     /translation="MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPN
                     GPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSITKDTASVFRNGQTAEYQMIM
                     TVNATVLIPGHDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLP
                     SIRAADIRSDEEQTSTTTDTPATPARVSTTLGN"
     gene            7651..8682
                     /gene="holA"
                     /locus_tag="OQQ19_000586"
     CDS             7651..8682
                     /gene="holA"
                     /locus_tag="OQQ19_000586"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HCS1802330.1"
                     /translation="MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAA
                     QGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTG
                     LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNL
                     ELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWV
                     DALLMGKSKRTLHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKH
                     RVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHK
                     PLADVFIDG"
     gene            8684..9325
                     /gene="nadD"
                     /locus_tag="OQQ19_000587"
     CDS             8684..9325
                     /gene="nadD"
                     /locus_tag="OQQ19_000587"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HCS1802331.1"
                     /translation="MKSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP
                     HRPQPEANSVQRKHMLELAIANKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPL
                     AFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNQED
                     LHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLYR"
     gene            9349..9959
                     /locus_tag="OQQ19_000588"
                     /pseudo
     CDS             9349..9959
                     /locus_tag="OQQ19_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415171.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin/alpha-ribazole phosphatase"
     gene            10219..10536
                     /gene="rsfS"
                     /locus_tag="OQQ19_000589"
                     /gene_synonym="rsfA"
     CDS             10219..10536
                     /gene="rsfS"
                     /locus_tag="OQQ19_000589"
                     /gene_synonym="rsfA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007373852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HCS1802332.1"
                     /translation="MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTS
                     SRHVMSIADHVVQESRAAGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEK
                     LWS"
     gene            10540..11007
                     /gene="rlmH"
                     /locus_tag="OQQ19_000590"
     CDS             10540..11007
                     /gene="rlmH"
                     /locus_tag="OQQ19_000590"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HCS1802333.1"
                     /translation="MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRG
                     KNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLI
                     GGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE"
     gene            11038..12939
                     /gene="mrdA"
                     /locus_tag="OQQ19_000591"
     CDS             11038..12939
                     /gene="mrdA"
                     /locus_tag="OQQ19_000591"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-transpeptidase MrdA"
                     /protein_id="HCS1802334.1"
                     /translation="MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQI
                     VRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTL
                     DALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG
                     YKRRYYPYGSALTHVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVL
                     HGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVT
                     DPRTGGVLALVSTPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKP
                     YVAVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESADTFF
                     YQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIP
                     VGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIH
                     SGYWELAKDGMYGVANRPNGTTHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAE
                     RLRDHKLMTAFAPYNNPQVAVAMILENGGAGPAVGTLMRQILDHIMLGDNNTDLPAEN
                     PAVAAAEDH"
     gene            12942..14054
                     /gene="mrdB"
                     /locus_tag="OQQ19_000592"
                     /gene_synonym="rodA"
     CDS             12942..14054
                     /gene="mrdB"
                     /locus_tag="OQQ19_000592"
                     /gene_synonym="rodA"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004885876.1"
                     /note="rod shape-determining protein RodA; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase MrdB"
                     /protein_id="HCS1802335.1"
                     /translation="MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIG
                     MMERKIGQIAMGLVIMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRW
                     LDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDL
                     GTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPE
                     SDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVG
                     ILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGV
                     PLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV"
     gene            14065..15153
                     /gene="rlpA"
                     /locus_tag="OQQ19_000593"
     CDS             14065..15153
                     /gene="rlpA"
                     /locus_tag="OQQ19_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic peptidoglycan transglycosylase RlpA"
                     /protein_id="HCS1802336.1"
                     /translation="MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEIS
                     GADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFD
                     PTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSN
                     NTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILP
                     VSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPA
                     MVTPQAASQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGP
                     FASKAEASTLQQRLQTEAQLQSFITTAQ"
     gene            15293..16504
                     /gene="dacA"
                     /locus_tag="OQQ19_000594"
     CDS             15293..16504
                     /gene="dacA"
                     /locus_tag="OQQ19_000594"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase DacA"
                     /protein_id="HCS1802337.1"
                     /translation="MNTIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQI
                     DAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGN
                     DAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVG
                     LMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFT
                     FNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKG
                     REAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDMYLTIPRGRM
                     KDLKASYVLNSSELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIID
                     YIKLMFHHWFG"
     gene            16615..16878
                     /locus_tag="OQQ19_000595"
     CDS             16615..16878
                     /locus_tag="OQQ19_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HCS1802338.1"
                     /translation="MKTKLNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYT
                     PTVKPSSKGNYHSVSITINATHIEQVEILYEELGKIDIVRMVL"
     gene            16979..17620
                     /gene="lipB"
                     /locus_tag="OQQ19_000596"
     CDS             16979..17620
                     /gene="lipB"
                     /locus_tag="OQQ19_000596"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415163.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HCS1802339.1"
                     /translation="MYQDKILVRQLGLQPYEPISQAMHEFTDTRDDSTLDEIWLVEHY
                     PVFTQGQAGKAEHILMPGDIPVIQSDRGGQVTYHGPGQQVMYVLLNLKRRKLGVRELV
                     TLLEQTVVNTLAELGIEAHPRADAPGVYVGEKKICSLGLRIRRGCSFHGLALNVNMDL
                     SPFLRINPCGYAGMEMAKISQWKPEATTNNIAPRLLENILALLNNPDFEYITA"
     gene            17879..18832
                     /locus_tag="OQQ19_000597"
     CDS             17879..18832
                     /locus_tag="OQQ19_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415162.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
                     /protein_id="HCS1802340.1"
                     /translation="MDSNNQIEPCLSRKSSEGKPQIFTTLRNIALNLLTIFEAVYVHK
                     GIVNAAKVLNLPPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLES
                     ILGALDIEGSYDKQRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQL
                     SQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLLSLEDDRETIDNAAHVLLL
                     PEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPSRFYNLFSRCWP
                     LEKLPFPSLNKEQIDFSIHYNKFSLRDPILHGVIDVIRNAF"
     gene            19041..20006
                     /gene="lipA"
                     /locus_tag="OQQ19_000598"
     CDS             19041..20006
                     /gene="lipA"
                     /locus_tag="OQQ19_000598"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HCS1802341.1"
                     /translation="MSKPIVMERGVKYRDADKMALIPVKNVAIEREALLRKPEWMKIK
                     LPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCD
                     VAHGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKS
                     PQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLL
                     ERFKEAHPEIPTKSGLMVGLGETNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQ
                     RYVSPDEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK"
     gene            complement(20107..20310)
                     /gene="tatE"
                     /locus_tag="OQQ19_000599"
     CDS             complement(20107..20310)
                     /gene="tatE"
                     /locus_tag="OQQ19_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatE"
                     /protein_id="HCS1802342.1"
                     /translation="MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMN
                     DDDAAAKKGADVDLQAEKLSHKE"
     gene            complement(20439..21227)
                     /locus_tag="OQQ19_000600"
     CDS             complement(20439..21227)
                     /locus_tag="OQQ19_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deaminated glutathione amidase"
                     /protein_id="HCS1802343.1"
                     /translation="MLVAAGQFAVTSVWEKNAEICASLMAQAAENDVSLFVLPEALLA
                     RDDHDADLSVKSAQLLEGEFLGRLRRESKRNMMTTILTIHVPSTPGRAWNMLVALQAG
                     NIVARYAKLHLYDAFAIQESRRVDAGNEIAPLLEVEGMKVGLMTCYDLRFPELALAQA
                     LQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTTCYMVAAGECGNKNIGQSRIIDPF
                     GVTIAAASEMPALIMAEVTPERVRQVRAQLPVLNNRRFAPPQLL"
     gene            21320..21703
                     /gene="crcB"
                     /locus_tag="OQQ19_000601"
     CDS             21320..21703
                     /gene="crcB"
                     /locus_tag="OQQ19_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HCS1802344.1"
                     /translation="MLQLLLAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLTANLIG
                     AFIIGMGFAWFSRMTNIDPVWKVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLN
                     VFVNLLGSFAMTALAFWLFSASTAH"
     gene            complement(21758..21967)
                     /gene="cspE"
                     /locus_tag="OQQ19_000602"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
     CDS             complement(21758..21967)
                     /gene="cspE"
                     /locus_tag="OQQ19_000602"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator/RNA stability
                     regulator CspE"
                     /protein_id="HCS1802345.1"
                     /translation="MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTL
                     AEGQRVEFEITNGAKGPSAANVIAL"
     gene            complement(22142..22702)
                     /gene="pagP"
                     /locus_tag="OQQ19_000603"
     CDS             complement(22142..22702)
                     /gene="pagP"
                     /locus_tag="OQQ19_000603"
                     /EC_number="2.3.1.251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) palmitoyltransferase PagP"
                     /protein_id="HCS1802346.1"
                     /translation="MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAPTWQQ
                     PEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDS
                     WNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGP
                     VTFQMTYIPGTYNNGNVYFAWMRFQF"
     gene            23291..24676
                     /gene="dcuC"
                     /locus_tag="OQQ19_000604"
     CDS             23291..24676
                     /gene="dcuC"
                     /locus_tag="OQQ19_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuC"
                     /protein_id="HCS1802347.1"
                     /translation="MLTFIELLIGVVVIVGVARYIIKGYSATGVLFVGGLLLLIISAI
                     MGHKVLPSSQASTGYSATDIVEYVKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMV
                     VKLASKPLQYINSPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRG
                     AAAAICASPAAIILAPTSGDVVLAAQASEMSLIDFAFKTTLPISIAAIIGMAIAHFFW
                     QRYLDKKEHISHEMLDVSEITTTAPAFYAILPFTPIIGVLIFDGKWGPQLHIITILVI
                     CMLIASILEFLRSFNTQKVFSGLEVAYRGMADAFANVVMLLVAAGVFAQGLSTIGFIQ
                     SLISIATSFGSASIILMLVLVILTMLAAVTTGSGNAPFYAFVEMIPKLAHSSGINPAY
                     LTIPMLQASNLGRTLSPVSGVVVAVAGMAKISPFEVVKRTSVPVLVGLVIVIVATELM
                     VPGTAAAVTGK"
     gene            complement(24717..25397)
                     /gene="dpiA"
                     /locus_tag="OQQ19_000605"
                     /gene_synonym="citB"
     CDS             complement(24717..25397)
                     /gene="dpiA"
                     /locus_tag="OQQ19_000605"
                     /gene_synonym="citB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator DpiA"
                     /protein_id="HCS1802348.1"
                     /translation="MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARM
                     MIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVF
                     DYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGID
                     PLTLNAVRKLFKEPGVQHTTETVAQALTISRTSARRYLEYCASRHLIIAEIVHGKVGR
                     PQRIYHSG"
     gene            complement(25366..27023)
                     /gene="dpiB"
                     /locus_tag="OQQ19_000606"
                     /pseudo
     CDS             complement(25366..27023)
                     /gene="dpiB"
                     /locus_tag="OQQ19_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308685.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase DpiB"
     gene            27372..28430
                     /gene="citC"
                     /locus_tag="OQQ19_000607"
     CDS             27372..28430
                     /gene="citC"
                     /locus_tag="OQQ19_000607"
                     /EC_number="6.2.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415151.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[citrate (pro-3S)-lyase] ligase"
                     /protein_id="HCS1802349.1"
                     /translation="MFGNDIFTRVKRSENKKMAEIAQFLHENDLSVDTTVEVFITVTR
                     DEKLIACGGIAGNIIKCVAISESVRGEGLALTLATELINLAYERHSTHLFIYTKTEYE
                     ALFRQCGFSTLTSVPGVMVLMENSATRLKRYAESLKKFRHPGNKIGCIVMNANPFTNG
                     HRYLIQQAAAQCDWLHLFLVKEDSSRFPYEDRLDLVLKGTADIPRLTVHRGSEYIISR
                     ATFPCYFIKEQSVINHCYTEIDLKIFRQYLAPALGVTHRFVGTEPFCRVTAQYNQDMR
                     YWLKTPTISAPPIELVEIERLRYQEMPISASRVRQLLAKNDLTAIAPLVPAVTLHYLQ
                     NLLEHSRQDAAARQKTPA"
     gene            28445..28741
                     /gene="citD"
                     /locus_tag="OQQ19_000608"
     CDS             28445..28741
                     /gene="citD"
                     /locus_tag="OQQ19_000608"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase acyl carrier protein"
                     /protein_id="HCS1802350.1"
                     /translation="MKINQPAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGDA
                     IRTTILDVLARYNVRGVQLNVDDKGTLDCILRARLEALLARASGIPTLPWEDCQ"
     gene            28738..29646
                     /gene="citE"
                     /locus_tag="OQQ19_000609"
     CDS             28738..29646
                     /gene="citE"
                     /locus_tag="OQQ19_000609"
                     /EC_number="4.1.3.34"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415149.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (pro-3S)-lyase subunit beta"
                     /protein_id="HCS1802351.1"
                     /translation="MISASLQQRKTRTRRSMLFVPGANAAMVSNSFIYPADALMFDLE
                     DSVALREKDTARRMVYHALQHPLYRDIETIVRVNALDSEWGVNDLEAVVRGGADVVRL
                     PKTDTAQDVLDIEKEILRIEKACGREPGSTGLLAAIESPLGITRAVEIAHASERLIGI
                     ALGAEDYVRNLRTERSPEGTELLFARCSILQAARSAGIQAFDTVYSDANNEAGFLQEA
                     AHIKQLGFDGKSLINPRQIDLLHNLYAPTQKEVDHARRVVEAAEAAAREGLGVVSLNG
                     KMVDGPVIDRARLVLSRAELSGIREE"
     gene            29657..31189
                     /gene="citF"
                     /locus_tag="OQQ19_000610"
     CDS             29657..31189
                     /gene="citF"
                     /locus_tag="OQQ19_000610"
                     /EC_number="2.8.3.10"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase subunit alpha"
                     /protein_id="HCS1802352.1"
                     /translation="MTQKIEQSQRQERVAAWNRRAECDLAAFQNSPKQTYQAEKARDR
                     KLCANLEEAIHRSGLQDGMTVSFHHAFRGGDLTVNMVMDVIAKMGFKNLTLASSSLSD
                     CHAPLVEHIRQGVVTRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELNI
                     DVAFLGVPSCDEFGNANGYTGKACCGSLGYAMVDADNAKQVVMLTEELLPYPHNPASI
                     EQEQVDLIVKVDRVGDAAKIGAGATRMTTNPRELLIARSAADVIVNSGYFKEGFSMQT
                     GTGGASLAVTRFLEDKMRSRDIRADFALGGITATMVDLHEKGLIRKLLDVQSFDSHAA
                     QSLARNPNHIEISANQYANWGSKGASVDRLDVVVLSALEIDTQFNVNVLTGSDGVLRG
                     ASGGHCDTAIASALSIIVAPLVRGRIPTLVDNVLTCITPGSSVDILVTDHGIAVNPAR
                     PELAERLQEAGIKVVSIEWLRERARLLTGEPQPIEFTDRVVAVVRYRDGSVIDVVHQV
                     KE"
     gene            31193..31743
                     /gene="citX"
                     /locus_tag="OQQ19_000611"
                     /pseudo
     CDS             31193..31743
                     /gene="citX"
                     /locus_tag="OQQ19_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308680.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase holo-[acyl-carrier protein]
                     synthase"
     gene            31718..32595
                     /gene="citG"
                     /locus_tag="OQQ19_000612"
                     /pseudo
     CDS             31718..32595
                     /gene="citG"
                     /locus_tag="OQQ19_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308679.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="triphosphoribosyl-dephospho-CoA synthase CitG"
     gene            32646..34109
                     /gene="citT"
                     /locus_tag="OQQ19_000613"
     CDS             32646..34109
                     /gene="citT"
                     /locus_tag="OQQ19_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/succinate antiporter CitT"
                     /protein_id="HCS1802353.1"
                     /translation="MSLAKDNIWKLLAPLVVMGVMFLIPVPNGMPPQAWHYFAVFVAM
                     IVGMILEPIPATAISFIAVTICVIGSNYLLFDAKELADPAFNAQKQALKWGLAGFSST
                     TVWLVFGAFIFALGYEVSGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNT
                     ARTGGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVL
                     GLEFVSKIAGIQISWLQWFLCFLPVGVILLIIAPWLSYVLYKPEITHSEEVATWAGDE
                     LKTMGALTRREWTLIGLVLLSLGLWVFGSEVINATAVGLLAVSLMLALHVVPWKDITR
                     YNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLEGFSPNATVIVLVLVFYFAH
                     YLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIY
                     GCGYVKSKDYWRLGAIFGVIYISMLLLVGWPILAMWN"
     gene            34220..35026
                     /gene="rna"
                     /locus_tag="OQQ19_000614"
     CDS             34220..35026
                     /gene="rna"
                     /locus_tag="OQQ19_000614"
                     /EC_number="4.6.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease I"
                     /protein_id="HCS1802354.1"
                     /translation="MKAFWRNAALLAVSLLPFSSANAVALQAKQYGDFDRYVLALSWQ
                     TGFCQSQHDRNRNERDECRLQTETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFG
                     CATRPIPNLPEAHASRMCSSPETGLSLETAAKLSEVMPGAGGRSCLERYEYAKHGACF
                     GFDPDAYFGTMVRLNQEIKESEAGKFLADNYGKTVSRRDFDAAFAKSWGKENVKAVKL
                     TCQGNPAYLTEIQISIKADAINAPLSANSFLPQPHPSNCGKTFVIDKVGY"
     gene            35256..35666
                     /gene="rnk"
                     /locus_tag="OQQ19_000615"
     CDS             35256..35666
                     /gene="rnk"
                     /locus_tag="OQQ19_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside diphosphate kinase regulator"
                     /protein_id="HCS1802355.1"
                     /translation="MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMC
                     SPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLR
                     VGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL"
     gene            complement(35897..37135)
                     /locus_tag="OQQ19_000616"
     CDS             complement(35897..37135)
                     /locus_tag="OQQ19_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent formaldehyde
                     dehydrogenase"
                     /protein_id="HCS1802356.1"
                     /translation="MKALTYHGPHHVQVENVPDPGIEQADDIILRITATAICGSDLHL
                     YRGKIPQVKHGDIFGHEFMGEVVETGKDVKNLQKGDRVVIPFVIACGDCFFCRMQQYA
                     ACENTNAGKGAALNKKQIPAPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLL
                     SDDKALFLSDILPTAWQAAKNAQIQQGSSVAVYGAGPVGLLTIACARLLGAEQIFVVD
                     HHPYRLSFAADRYGAIPINFDEDSDPAQSIIEQTAGHRGVDAVIDAVGFEAKGSTTET
                     VLTNLKLEGSSGKALRQCIAAVRRGGIVSVPGVYAGFIHGFLFGDAFDKGLTFKMGQT
                     HVHAWLGELLPLIEKGLLKPEEIVTHYMPFEEAARGYEIFEKREEECRKVILVPGAQS
                     AEEAQKAVSGLVNAMPGGTI"
     gene            37356..37784
                     /gene="uspG"
                     /locus_tag="OQQ19_000617"
     CDS             37356..37784
                     /gene="uspG"
                     /locus_tag="OQQ19_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspG"
                     /protein_id="HCS1802357.1"
                     /translation="MYKTIIMPVDVFEMELSDKAVRHAEFLTQDDGVIHLLHVLPGSA
                     SLSLDRFAADVRRFEEHLQHEAEERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAE
                     ELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVVR"
     gene            complement(37905..39470)
                     /gene="ahpF"
                     /locus_tag="OQQ19_000618"
     CDS             complement(37905..39470)
                     /gene="ahpF"
                     /locus_tag="OQQ19_000618"
                     /EC_number="1.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017455864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit F"
                     /protein_id="HCS1802358.1"
                     /translation="MLDTNMKTQLKAYLEKLTKPVELIATLDDSAKSAEIKELLAEIA
                     ELSDKVTFKEDNSLPVRKPSFLITNPGSNQGPRFAGSPLGHEFTSLVLALLWTGGHPS
                     KEAQSLLEQIRHIDGDFEFETYYSLSCHNCPDVVQALNLMSVLNPRIKHTAIDGGTFQ
                     NEITDRNVMGVPAVFVNGKEFGQGRMTLTEIVAKIDTGAEKRAAEELNKRDAYDVLIV
                     GSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVH
                     VDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGE
                     DQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA
                     DQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG
                     LLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKAS
                     LSAFDYLIRTKTA"
     gene            complement(39641..40204)
                     /gene="ahpC"
                     /locus_tag="OQQ19_000619"
     CDS             complement(39641..40204)
                     /gene="ahpC"
                     /locus_tag="OQQ19_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003858764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit C"
                     /protein_id="HCS1802359.1"
                     /translation="MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFT
                     FVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTG
                     ALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAS
                     HPGEVCPAKWKEGEATLAPSLDLVGKI"
     gene            40576..>40982
                     /gene="dsbG"
                     /locus_tag="OQQ19_000620"
     CDS             40576..>40982
                     /gene="dsbG"
                     /locus_tag="OQQ19_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415137.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbG"
                     /protein_id="HCS1802360.1"
                     /translation="MLKKILLLALLPAIAFAEELPAPVKAIEKQGITIIKTFDAPGGM
                     KGYLGKYQDMGVTIYLTPDGKHAISGYMYNEKGENLSNTLIEKEIYAPAGREMWQRME
                     QSHWLLDGKKDAPVIVYVFADPFCPYCKQFWQQA"
BASE COUNT        10180 a        10481 c        10071 g        10250 t
ORIGIN      
        1 cttccccaca gcacatagcg gtttgggcaa cgaattgggt ataaatcaac cctctctccg
       61 agccaccagc aattaatgct ttccactctt caggggaaga gcgatgccat gtcagatata
      121 agccagctaa atcattggca tgaccatcat cagtcatctg ataaatagtc tgaattaaat
      181 catcacgatt atttattccc caggatgatg agagatcgaa ttcttttata ccggtataca
      241 tttttggcga gtcatgcgcg ggtttgcaac cctgattaag tatttccatg ggcgcagaaa
      301 gcgcaaaaag aagatattgt tcttccttat tcatttgtta ataatccctt aagtgcatta
      361 actgactact tttttatatt acttgccggg ctttccgcac attaacgtcg actgtcaccc
      421 gaacagatgg agtattttcc ctatcaaacc ggcaaagata aaaatgtaga aaataatttt
      481 gatgacgccc agacagcccg gcccaccatc gtcaacgggc attggctgcg gttgcggctc
      541 cggttcaaca gtttgcttct cggtaaaatt cgccgcctga attaataatc gacgaataat
      601 taatgcttcc agtggacaac gatcttctgc atcaagacgg cttacgatcg gcattaatga
      661 ttcttctgtc ggttggctgg cctgcactaa ttgtttggca actaaatata atggccataa
      721 gagatgttct gtatcacgcg tgagtgagat ccgcggctta cgtcctttgt gcaaaaccat
      781 ctcgaccagt gaacgcccca gcgcagagag tttttcatcg ctgagtattt cgtataaatg
      841 aaaacgcgta cgggcgctgt cgccggggac ataaagtagc tgtttaccct gatcgttaac
      901 cagttcacga gcttcaatca tcatcaccac taacgggtaa taatcgaccc gatgctgacg
      961 gcaccattgc aatattaaag catccgcctg ggtggaggga tactcgcgcc agtagtcaca
     1021 aagttctgcc agcaagcttt cgccttctcc acaatagacg cgttgcgcgt attcataata
     1081 acgcgcatct tcattatcag gttcagcttc ccgccacgac cgggcgtaat ccagaagttc
     1141 ggggatatcc aggcgacctg cgctatacca gcggagtaaa tttctgtgca gttttgcatc
     1201 atcggggatg atcactgcgc gatgttgcgc taaatacaat gtcagccatt ctggatgcga
     1261 tgaccaaatc cgagcgaaca tttggtaaaa atcgatggtg tcattttgca cggcaacggg
     1321 cagatgcaga atggtctgga agttaaaaac attccccttc gcaatggcat ataaaaagga
     1381 ttccagttct tcttcgtcta tttccccgac gttttcctcc tgcaaccacc gcaatctttc
     1441 tgctaataac accacgcact cgaaggataa atgggcagtg ttcatggcga ttgtgcacag
     1501 cgaccagcgt aattcatcaa tctcttccat cgagcaataa tttaattgct gaatgaatcg
     1561 ctgccaggcg gagggcagaa aacgttcgct atcagaggca agtaacgcgc gaaaggcgag
     1621 cagaatttca tgttctgcta cctcatattc ttctggttgc caaacagatt tagcaggcga
     1681 ctgcgcaatc cgtagcgcct cctcatacgc ctgacgaagt tgtttaaaac cctgcggttc
     1741 ggtttctgga tgaaaggacg gtaacagcgc cagataagcg cggcggataa tatcgacgtc
     1801 agtcgtttcc tctatatcga ggatcttcca gcaatttttc ataagtcgct catatcctta
     1861 agcgtttccg ggcatgtggg gtagtcagcc agtggttgcc aggacaaggt agggtaatac
     1921 gcatcatcac tggcaaataa ttgataaaac atatcattgc cggaatcgtc gtattcttta
     1981 cgcgctaaga attcgcgtaa taaaggcaga tgatcatctt cgggagactg ccaatattgc
     2041 cgaccaaagg tataaccggc aaagtattgc cgccagttac tataataacg tagagcccgt
     2101 agatgaatac gcgactggat ccatagactt tcttcttcac tcaaccagtt attaagtacg
     2161 cccattcgac ttaaaaaacc catccggaca taatcccatg ctttaattcc tccctcacca
     2221 cagcattcgg ctgtgctggc gacaaattgc gcataagcct gaccttgctc atttaattca
     2281 gcaagatagt cacgccattc acatggagaa taacgaaacc agcggtgata aaaccctgcc
     2341 aaccgagcgg catgaccgtt ctcgatcatt cggtgaattg tgcgcagcag gtcatcacgg
     2401 tcatcaattc cccatgagga agaaaggtca aaaaagcatg tacctaaata cattttgggg
     2461 gatgaatgcg aaggtaaaca gcattcattg cgtatttcca tcggagtgga aagtgcaaac
     2521 aatatttttt gcgaccccat gtccatataa tttatcctta aacattcatt taatgaatgt
     2581 aaactacatt tcgagactca gttatttata cttttctgac gcgacataat acgcataaaa
     2641 taaggcttac gcaaaaatgg aacacataaa atataatatg ttttatctac aaccataagg
     2701 aaatgataat gatttttacg tcaagttgct gcgataattt atcaatagat gagattatcg
     2761 aacgtgctga aaaaggcgat tgcgaggctc aatatattgt tgggttttat tataatcgcg
     2821 atagcgcaat tgactctccg gacgacgaaa aggcctttta ctggctgaag ctggccgccg
     2881 agcaaggtca ttgtgaagca caatattcct taggacaaaa gtatactgag gataaaagcc
     2941 gtcataaaga taatgagcat gccatctttt ggctgaaaaa aactgcccta caaggccata
     3001 ctttcgcttc caacgccctt ggctggatac tggatcgtgg agaagacccc aattataaag
     3061 aagcggttgt ctggtatcag atagccgcgg agagcggaat gtcttatgcg caaaataatc
     3121 ttgggtggat gtacagaaat ggcaacggag tcgcaaaaga ctatgcgctg gcatttttct
     3181 ggtacaaaca agctgcatta caaggccata gtgacgcgca aaacaatctg gccgatcttt
     3241 atgaagacgg aaaaggcgtt gctcaaaaca agacactcgc cgcattctgg tatttgaaaa
     3301 gcgcacagca gggtaatcgg cacgcccagt ttcaaattgc atgggattat aacgctggcg
     3361 aaggggtgga ccaggactat aagcaagcga tgtactggta tctgaaggct gccgctcagg
     3421 aaagcgtcgg cgcttacgtc aacatcggtt atatgtataa acacggacaa ggcgttgaga
     3481 aagattatca ggctgccttt gaatggttta cgaaagccgc tgaatgcaat gacgccactg
     3541 cctggtataa cctggccatt atgtatcact acggagaagg aagacctgtc gatctccgac
     3601 aggctctcga cctgtatcgt aaagttcagt catccggaac cagagatgtc agtcaggaaa
     3661 ttcgtgagac tgaagattta ctgtagagat aaaaacaagg gccggggaat ttcattcggc
     3721 ccatattctc tttattgctg tgcgaaatca gactattacg gctcaaacgg gcgtctctgg
     3781 aactggtcat gaccacattt cgggcatagc gtcagcactt ccggtgtgta gatcgggaga
     3841 tggaagtgac atttctcgca gaccagattt cccagcccga ccacttctcc gctgtgataa
     3901 accccatgat gattgaggtc ctggaaaact tcgcgccatt caagctgcgt tttatcggtg
     3961 atatctgcca gctcctgcca taagctttct ttaatcaccc gcataaagac gctgtcagat
     4021 tcttctttca ggctctcttc atagctcatg gcgaactctt ccaggtcacg tcttacagct
     4081 cgcgtcagct catcgacctc ggttcgcgtt aactcccctg tttttattac gcgctcgcgc
     4141 gcctgttcca ccagtgcgtc gatatcacgt tcgccattgc gcaggcgttc gctcagtgac
     4201 gcgaccagtt cacggtaata ttgagcaacc ttgttcatcg tttcatctcc cgggtcgtta
     4261 actgactata ataatagacg ttctttgttc cttgctttgc taatacgccc acaaactctg
     4321 taaattaatg tatgaataat ccgggcatca tttcaacgtc gagtgcgcga aaggctgttt
     4381 tgacgcggac gtttgggcta tgctatgcgg atctgaaaaa ccacctcaac gctacatttg
     4441 tagccgtatt gaaaacagga ccactggctg ccatgcaaga gcaataccgc ccggaagaga
     4501 tagaatccaa agtacagctt cattgggatg agaagcgcac atttgaagta accgaagacg
     4561 agagcaaaga gaagtattac tgcctgtcta tgcttcccta tccttctggt cgactacaca
     4621 tgggccacgt acgtaactac accatcggtg acgtgatcgc ccgctaccag cgtatgctgg
     4681 gcaaaaacgt cctgcagccg atcggctggg acgcgtttgg tctgcctgcg gaaggcgcgg
     4741 cggtgaaaaa caacaccgct ccggcaccgt ggacgtacga caacatcgcg tatatgaaaa
     4801 accagctcaa aatgctgggc tttggttatg actggagccg cgagctggca acctgtacgc
     4861 cggaatacta ccgttgggaa cagaaattct tcaccgagct gtataaaaaa ggcctggtat
     4921 ataagaagac ttctgcggtc aactggtgcc cgaacgacca gaccgtactg gcgaacgaac
     4981 aagttatcga cggctgctgc tggcgctgcg ataccaaagt tgaacgtaaa gagatcccgc
     5041 agtggtttat caaaatcact gcttacgctg acgagctgct caacgatctg gataaactgg
     5101 atcactggcc agacaccgtt aaaagcatgc agcgtaactg gatcggtcgt tccgaaggcg
     5161 tggagatcac cttcaacgtt aacgactatg acaacacgct gaccgtttac actacccgcc
     5221 cggacacctt tatgggttgt acctacctgg cggtagctgc gggtcatccg ctggcgcaga
     5281 aagcggcgga aaataatcct gaactggcgg cctttattga cgaatgccgt aacaccaaag
     5341 ttgccgaagc tgaaatggcg acgatggaga aaaaaggcgt cgatactggc tttaaagctg
     5401 ttcacccatt aacgggcgaa gaaattcccg tttgggcagc aaacttcgta ttgatggagt
     5461 acggcacggg cgcagttatg gcggttccgg gtcacgacca gcgcgactac gagtttgcct
     5521 ctaaatacgg cctgaacatc aaaccagtta tcctggctgc tgacggctct gagccagatc
     5581 tttctcagca agccctgact gaaaaaggcg tgctgttcaa ctctggcgaa ttcaacggtc
     5641 ttgaccatga agcggccttc aacgccatcg ccgataaact gactgcgatg ggcgttggcg
     5701 agcgtaaagt gaactaccgc ctgcgcgact ggggtgtttc tcgtcagcgt tactggggcg
     5761 cgccgattcc gatggtgacg ctggaagacg gtaccgtaat gccgaccccg gacgaccagc
     5821 tgccggtgat cctgccggaa gatgtggtga tggacggcat taccagcccg attaaagcag
     5881 atccggagtg ggcaaaaact accgttaacg gtatgccagc gctgcgtgaa accgacactt
     5941 tcgacacctt tatggagtcc tcctggtact atgcgcgcta cacttgccca gagtacaaag
     6001 aaggtatgct ggattccgaa gcggctaact actggctgcc ggtggatatc tacattggtg
     6061 gtatcgaaca cgccattatg cacctgctct acttccgctt cttccacaaa ctgatgcgtg
     6121 atgcaggcat ggtgaactct gacgaaccag cgaaacagtt gctgtgtcag ggtatggtgc
     6181 tggcagatgc cttctactat gttggcgaaa acggcgaacg taactgggtt tccccggttg
     6241 atgctatcgt tgaacgtgac gagaaaggcc gtatcgtgaa agcgaaagat gcggcaggcc
     6301 atgaactggt ttataccggc atgagcaaaa tgtccaagtc gaagaacaac ggtatcgacc
     6361 cacaggtgat ggttgaacgt tacggcgcgg acaccgttcg tctgtttatg atgtttgctt
     6421 ctccggctga tatgactcta gaatggcagg aatccggtgt ggaaggggct aaccgcttcc
     6481 tgaaacgtgt ctggaaactg gtttacgagc acacagcaaa aggtgatgtt gcggcactga
     6541 acgttgatgc gctgactgaa gatcagaaag cgctgcgtcg cgatgtgcat aaaacgatcg
     6601 ctaaagtgac cgatgatatc ggccgtcgtc agaccttcaa caccgcaatt gcggcgatta
     6661 tggagctgat gaacaaactg gcgaaagcac caaccgatgg cgagcaggat cgcgctctga
     6721 tgcaggaagc gctgctggcc gttgtccgta tgcttaaccc gttcaccccg cacatctgct
     6781 tcacgctgtg gcaggaactg aaaggcgaag gcgatatcga caacgcgccg tggccggttg
     6841 ctgacgaaaa agcgatggtg gaagactcca cgctggtcgt ggtgcaggtt aacggtaaag
     6901 tccgtgccaa aatcaccgtt ccggtggacg caacggaaga acaggttcgc gaacgtgctg
     6961 gccaggaaca tctggtagca aaatatcttg atggcgttac cgtgcgtaaa gtgatttacg
     7021 taccaggtaa actcctcaat ctggtcgttg gctaagcgcg ggaggaagcg tgcgatatct
     7081 ggcaacattg ttgttatctc tggcggtgtt aatcaccgcc gggtgtggct ggcatctgcg
     7141 tgataccacg caggttcctt ccactatgaa ggtcatgatc ctggactcag gcgatccgaa
     7201 cgggccatta agccgtgcgg tgcgtaacca gttacgtctg aatggtgtcg agttgcttga
     7261 taaagaaacc acgcgtaagg acgttccatc cctgcgtttg ggtaaagtga gcatcacgaa
     7321 agataccgca tcggtattcc gtaacggtca aacagcagag tatcagatga tcatgacggt
     7381 gaatgcgacc gtgttgatcc ccggccatga tatctacccg attagcgcca aagtcttccg
     7441 ttcgttcttt gataacccgc aaatggcgtt agcgaaagat aacgaacaag acatgatcgt
     7501 aaaagagatg tacgaccgtg ctgccgaaca gctgattcgt aagctgccaa gcatccgtgc
     7561 tgcggatatt cgttccgacg aagaacagac gtcgaccaca acggatactc cggcaacgcc
     7621 tgcacgcgtc tccaccacgc tgggtaactg atgattcggt tgtacccgga acaactccgc
     7681 gcgcagctca atgaagggct gcgcgcggcg tatcttttac ttggtaacga tcctctgtta
     7741 ttgcaggaaa gccaggacgc tgttcgtcag gtagctgcgg cacaaggatt cgaagaacac
     7801 cacacttttt ccattgatcc caacactgac tggaatgcga tcttttcgtt atgccaggct
     7861 atgagtctgt ttgccagtcg acaaacgcta ttgctgttgt taccagaaaa cggaccgaat
     7921 gcggcgatca atgaacaact tctcacactc accggacttc tgcatgacga cctgctgttg
     7981 atcgtccgcg gtaataaatt aagcaaagcg caagaaaatg ccgcctggtt tactgcgctt
     8041 gcgaatcgca gcgtgcaggt gacctgtcag acaccggagc aggctcagct tccccgctgg
     8101 gttgctgcgc gcgcaaaaca gctcaactta gaactggatg acgcggcaaa tcaggtgctc
     8161 tgctactgtt atgaaggtaa cctgctggcg ctggctcagg cactggagcg tttatcgctg
     8221 ctctggccag acggcaaatt gacattaccg cgcgttgaac aggcggtgaa tgatgccgcg
     8281 catttcaccc cttttcattg ggttgatgct ttgttgatgg gaaaaagtaa gcgcacattg
     8341 catattcttc agcaactgcg tctggaaggc agcgaaccgg ttattttgtt gcgcacatta
     8401 caacgtgaac tgttgttact ggttaacctg aaacgccagt ctgcccatac gccactgcgt
     8461 gcgttgtttg ataagcatcg ggtatggcag aaccgccggg gcatgatggg cgaggcgtta
     8521 aatcgcttaa gtcagacgca gttacgtcag gccgtgcaac tcctgacacg aacggaactc
     8581 accctcaaac aagattacgg tcagtcagtg tgggcagagc tggaagggtt atctcttctg
     8641 ttgtgccata aacccctggc ggacgtattt atcgacggtt gatatgaaat ctttacaggc
     8701 tctgtttggc ggcacctttg atccggtgca ctatggtcat ctaaaacccg tggaaacgct
     8761 ggcgaatttg attggtctga cgcgggtcac aatcatccct aataatgttc ctccgcatcg
     8821 tccccagccg gaagcgaaca gcgtgcagcg taaacacatg cttgaactgg cgattgccaa
     8881 caagccatta tttactcttg atgaacgcga gctaaagcgc aatgccccct cttacactgc
     8941 gcaaacactg aaagagtggc ggcaggaaca aggaccggac gtgccgctgg cgtttattat
     9001 tggtcaggat tcactgctga cctttccgac ctggtacgaa tacgaaacga tactcgacaa
     9061 tgcacatttg atcgtctgtc ggcgtccagg ttacccactt gaaatggcgc aaccgcaata
     9121 ccagcaatgg ctggaagatc atttgacaca taaccaggaa gatcttcacc ttcagcctgc
     9181 cggtaaaatt tatctggctg aaacgccgtg gtttaacatc tcggcgacca tcatccgcga
     9241 acgtttgcaa aacggtgaat cgtgtgagga tttattgccg gaaccggtac tgacttacat
     9301 taaccaacaa ggcttgtatc gctgatacct gtcgttacgg agggcatgat gcgactgtgg
     9361 ttaattcgtc atggtgaaac gcaagcgaat atcgatggtc tttacagcgg tcatgcgccc
     9421 cccccctgac cgcgcgcggt attgagcaag cgcaaaatct gcatacgctg ctacatggtg
     9481 tttcctttga tctggtttta tgcagtgaac tggaacgggc acagcatacc gcgcgactgg
     9541 ttctcagtga ccgccagctc cccgtgcaaa tcatccctga actcaacgaa atgttttttg
     9601 gcgactggga gatgcgacat catcgcgacc tcatgcaaga agatgccgaa aactatagcg
     9661 cgtggtgcaa tgactggcag catgcaatcc ccacgaacgg tgaaggattt caggcatttt
     9721 cgcaacgtgt ggaacgcttt atcgcaaggc ttagtgaatt tcagcactat cagaatattt
     9781 tagtcgtcag ccatcagggt gtactgagtc tgttaatcgc ccgtttaatt ggcatgcctg
     9841 ccgaggctat gtggcatttt cgcgttgacc aggggtgttg gagcgccatt gatatcaacc
     9901 aaaaattcgc gacgctacgc gtcctcaata gccgtgccat cggggtcgat aatgcatgac
     9961 ttttctgttt ttttacgggt aagccgcaac gaccattgac agacccgggc aggctgatat
    10021 tctccgcagc cagacttttt tcgccagaca cgactttgta gaaattgttt tacaaaaatg
    10081 gcgatgcaat ctgcggcgcg gggtgggatg atagcccact ttcgaaagcc gattcggcga
    10141 caattgtccc gaaatcgcct ctggttcagg tatactgaca gaccattttt atctatttga
    10201 ttcacccagg gggaaaactt gcagggtaaa gcactccagg attttgttat cgacaaaatt
    10261 gatgacctca aaggtcagga catcatcgcc ttagacgttc aaggcaaatc cagcatcacc
    10321 gactgcatga tcatctgtac gggtacgtcc agccgtcatg ttatgtccat tgctgaccac
    10381 gttgtgcagg agtctcgcgc agcgggcctg ttaccgctcg gcgtagaagg tgaaaacagc
    10441 gccgactgga ttgtcgtgga tttgggcgat gtgattgtcc atgtcatgca ggaagagagc
    10501 cgtcgcctgt atgaactgga aaaactctgg agttaatgcg tgaagctgca acttgtcgcc
    10561 gtgggaacga aaatgccgga ctgggtacaa accggtttta ccgagtacct gcgtcgtttt
    10621 ccgaaagata tgcccttcga gctgattgaa attccggccg gaaaacgcgg caagaatgcg
    10681 gacatcaagc gcatactcga caaagagggt gagcagatgt tggcggccgc aggcaaaaac
    10741 cgcattgtca ccctcgatat tccaggcaag ccctgggata cgccgcagtt agccgctgag
    10801 ctggaacgct ggaagctgga tggtcgcgac gtcagtctac tgattggcgg gcctgaaggg
    10861 ttgtcgcctg cctgtaaagc ggcggcggag cagagctggt cgctgtcggc gcttaccctc
    10921 ccccatccgc tggttcgcgt gctggtcgca gagagtctgt accgggcgtg gagcatcacc
    10981 accaaccatc cttatcaccg tgagtgataa gggagctttg agtagaaaac gcagcggatg
    11041 aaactacaga actcttttcg cgactatacg gcagagtccg cgctgtttgt gcgccgggcg
    11101 ctggtcgcct ttttggggat tttgctgctg accggcgtgc ttatcgccaa cctgtataat
    11161 ctgcaaattg ttcgctttac cgactaccag acccgctcta atgaaaaccg cattaagctg
    11221 gtgcctatcg cgcccagccg cggcattatt tacgaccgta atggtatccc tctggccctc
    11281 aaccgcacta tctaccagat agaaatgatg ccagagaaag tcgataacgt gcagcaaacg
    11341 ctggacgctt tgcgcagcgt ggttgatctg accgatgacg atattgctgc attccgaaaa
    11401 gagcgcgcac gttcacaccg tttcacctct attcccgtga aaactaacct gaccgaagta
    11461 caagtagctc gctttgccgt caatcagtac cgttttccgg gggttgaagt taaaggctat
    11521 aaacgtcgtt actatcctta cggttcggcg ttgacccacg tcatcggcta tgtgtcgaaa
    11581 atcaacgata aagacgtcga acgcctgaat aatgacggca aactggccaa ctatgcggca
    11641 acgcatgata tcggtaagct gggcattgag cgttactatg aagacgtgct gcacggtcag
    11701 accggttatg aagaggttga agttaacaac cgtgggcgtg ttatccgcca gttaaaagaa
    11761 gtaccaccgc aagccggaca cgatatttac ctgacgctgg atctcaaact ccagcaatat
    11821 attgaaacgc tgctggcggg tagccgcgca gctgtggtag tcaccgatcc gcgtacaggt
    11881 ggggtgctgg cgctggtttc cacgcctagt tatgacccaa acttgtttgt tgacggtatc
    11941 tccagcaaag attattccgc cttgttgaac gacccgaata caccgctggt gaaccgcgcc
    12001 acacaggggg tttatcctcc cgcgtctaca gttaaaccct atgtggcggt ttcggcattg
    12061 agcgccgggg tgatcacgcg caatacgacg ctgtttgacc caggctggtg gcaactgcca
    12121 ggttcggaaa aacgttatcg tgactggaaa aaatggggcc acgggcgtct gaatgtcaca
    12181 agatcgctgg aagaatctgc ggataccttc ttctatcagg tggcctacga tatggggatc
    12241 gatcgcctct ccgaatggat gggtaaattc ggttatggtc attacaccgg tatcgacctg
    12301 gcggaagaac gttccggcaa catgcctacc cgcgaatgga aacagaaacg ctttaaaaaa
    12361 ccgtggtatc agggtgacac cattccggtt ggtatcggtc agggttactg gacagcgacc
    12421 ccaatccaga tgagtaaggc actgatgatc ctgattaatg acggtatcgt gaaggttccg
    12481 catttgctga tgagcaccgc cgaagacggc aaacaggtgc catgggtaca accgcatgaa
    12541 ccgcccgtcg gcgatattca ttccggttac tgggagctgg cgaaagacgg tatgtacggt
    12601 gttgctaacc gccctaacgg tacgacgcat aaatactttg ccagcgcacc gtacaaaatt
    12661 gcggcgaaat ctggtaccgc tcaggtcttc ggtctgaaag cgaacgaaac ctataatgcg
    12721 cacaaaattg ccgagcgttt acgtgaccac aaactgatga ccgcctttgc gccatacaac
    12781 aatccgcaag tggctgtcgc catgattctg gagaacggcg gcgcgggtcc ggcggttggt
    12841 acgctgatgc gtcagatcct cgaccacatt atgctgggtg ataacaacac cgatctgcct
    12901 gcggaaaatc cagcggttgc cgcagcggag gaccattaat catgacggat aatccgaata
    12961 aaaaaacatt ctgggataaa gtccatctcg atcccacaat gctgctgatc ttactggcat
    13021 tgctggttta cagcgcccta gttatctgga gcgccagcgg tcaggatatt ggcatgatgg
    13081 agcgtaaaat cggccaaatc gcgatgggtc tggtcatcat ggtggtgatg gcgcaaattc
    13141 ctccacgcgt ttatgaaggc tgggccccct atctctatat catctgtatt attttgctgg
    13201 tggcggtaga tgctttcggt gccatctcta aaggtgctca acgctggctg gacctcggta
    13261 ttgttcgttt tcagccgtcg gaaattgcca aaatagccgt accactgatg gttgcgcgct
    13321 ttatcaaccg cgacgtttgc ccaccgtcgt tgaagaacac aggcatcgcg ctggtgctga
    13381 tatttatgcc cacgctgctg gtggctgcac agcctgacct gggaacatca atcctcgttg
    13441 cgctttccgg tctgtttgta ctgttcctct ctggccttag ctggcgtctg attggcgtcg
    13501 cagtagtgct ggtggcggcg ttcattccta ttctgtggtt cttcctgatg catgattacc
    13561 agcgccagcg cgtaatgatg ctcctagacc cggaatcaga cccactcggc gcgggctatc
    13621 acattattca gtctaaaatt gctattggct ccggcggatt acgcggcaaa ggctggctgc
    13681 atggcactca gtcacaactt gaatttctac ccgaacgcca taccgacttt atcttcgcgg
    13741 tactggcgga agagctggga ttagtgggca ttttgattct gctcgctctc tacattctgc
    13801 tgatcatgcg cgggctgtgg atagccgcca gagcgcaaac cacctttggt cgcgtcatgg
    13861 ctggcggctt aatgctgata ttattcgttt atgtcttcgt aaatattggt atggtaagcg
    13921 gtattctgcc ggttgtaggg gttccgctcc cactggtcag ttatggagga tcagcgctaa
    13981 ttgtgctgat ggctgggttc gggattgtaa tgtcaatcca cacccacagg aaaatgttgt
    14041 cgaaaagcgt gtaagaggtg cgcaatgcgt aagcagtggc tcgggatctg catcgcggca
    14101 ggaatgctcg cggcatgtac aagcgatgat ggtcagcaac agacggtaag tgtaccgcag
    14161 cctgcggtat gtaacggccc catagttgaa attagcgggg cggacccgcg tttcgaacca
    14221 ctgaacgcga cggcaaatca ggattaccag cgcgacggta aaagctacaa aatcgtgcag
    14281 gatccgtctc gatttagcca ggcgggactg gcggcaatct atgatgccga accaggcagt
    14341 aacctgacgg cctctggcga agctttcgat ccgacacagc tgacggcggc ccatccaacg
    14401 cttccgatcc ccagctacgc cagaatcact aacctggcta acgggcgaat gatcgtggtg
    14461 cgcattaatg atcgcggccc ttacggcaac gaccgcgtta tttcgctttc tcgcgcggca
    14521 gctgaccgtc ttaacacgtc aaacaacacc aaagttcgta tcgatccgat tattgtcgcc
    14581 caggatggtt cgctttctgg tcctggtatg gcttgtacca cagtcgccaa acagacttac
    14641 gccctgcctg cacctcccga tttaagcggt ggcgcgggaa caagttcagt gtctggcccg
    14701 cagggtgaca ttcttccggt cagtaattcg acgctaaaaa gcgaagatcc gaccggcgcg
    14761 ccggtaacca gtagcggttt cctcggcgca ccaacgacct tagcgcctgg tgtactggaa
    14821 ggcagcgaac cgacgcctgc gccacagccc gttgttacag ctccgtcgac aacgcctgca
    14881 acctcgcctg caatggtgac accgcaagcc gcctcgcaaa gcgccagcgg caactttatg
    14941 gtgcaagtcg gggccgttag cgatcaggct cgtgcgcaac agtaccaaca gcaactggga
    15001 cagaagttcg gcgtccccgg tcgcgtaact caaaatggcg cggtctggcg gatccagctt
    15061 ggccccttcg ccagcaaagc cgaagccagt accttgcagc aacgtttgca aaccgaagcc
    15121 caattacagt catttattac caccgcgcag tagcgtaaag caggcatctg atgtgtcaat
    15181 ttctgtaaat gacgttaaca aagtcacgcg gaaagtcaga tgcctgccgg tagtgcattt
    15241 gctatagtag ggcacttttt ttaattccat cacggatgtc gtagttcaga ccatgaatac
    15301 cattttttcc gctcgtatca tgaagcgcct ggcgctcacc acggctcttt gcacagcctt
    15361 tatctctgct gcacatgccg atgacctgaa tatcaaaact atgatcccgg gtgtaccgca
    15421 gatcgatgcg gagtcctaca tcctgattga ctataactcc ggcaaagtgc tcgccgaaca
    15481 gaacgcagat gtccgccgcg atcctgccag cctgaccaaa atgatgacca gttacgttat
    15541 cggccaagca atgaaagccg gtaaatttaa agaaactgat ttagtcacta tcggcaacga
    15601 cgcatgggcc accggtaacc cggtgtttaa aggctcttcg ctgatgttcc tcaaaccggg
    15661 catgcaggtt ccggtttctc agctgatccg cggtattaac ctgcaatcgg gtaacgatgc
    15721 ttgtgtcgcc atggctgatt ttgccgctgg tagccaggac gcttttgttg gcttgatgaa
    15781 cagctacgtt aacgccctgg gcctgaaaaa cacccacttc cagacggtac atggtctgga
    15841 tgctgatggt cagtacagct ccgcgcgcga tatggcgctg atcggccagg cgttgatccg
    15901 tgacgtaccg aatgaatact cgatctataa agaaaaagaa tttacgttta acggtattcg
    15961 ccagctgaac cgtaacggcc tgttatggga taacagcctg aatgtcgacg gcatcaaaac
    16021 cggacacact gacaaagcag gttacaacct tgttgcttct gcgactgaag gccagatgcg
    16081 cttgatctct gcggtgatgg gcggacgtac ttttaaaggc cgtgaagccg aaagtaaaaa
    16141 actgctgacc tggggcttcc gtttcttcga aaccgttaac ccactgaaag taggtaaaga
    16201 gttcgcctct gaaccggttt ggtttggtga ttctgatcgc gcttcgttag gggttgataa
    16261 agacatgtac ctgaccattc cgcgtggtcg catgaaagat ctgaaagcca gctatgtgct
    16321 gaacagcagt gaattgcatg cgccgctgca aaagaatcag gtcgtcggaa ctatcaactt
    16381 ccagcttgat ggcaaaacga tcgagcaacg cccgctggtt gtgttgcaag aaatcccgga
    16441 aggtaacttc ttcggcaaaa tcattgatta cattaaatta atgttccatc actggtttgg
    16501 ttgaaaatta aacacttgaa agtgtaattt ccgtccccat atactaagca tcagtaaaaa
    16561 aactcccgcc ttctggcggg agttgctatt taattacgtt acgccggagc tgacatgaaa
    16621 accaaactta acgaactgct tgaattccct actcctttta cttacaaagt tatggggcag
    16681 gcgttacctg agctggttga tcaggtggtt gaagtggtac agcgccatgc gccaggtgac
    16741 tacaccccaa cggtaaaacc aagcagcaaa ggcaactacc actcggtatc tatcactatc
    16801 aacgccactc atatcgagca ggttgaaata ctgtatgaag aactgggcaa aatcgatatt
    16861 gtccgcatgg ttctgtaact cgcttctccg ttacccggct cctggtcggg taactcccct
    16921 ctcctcgctg tgatatactt ttcccccact tttactcatt ctccacggag atgccgtttt
    16981 gtatcaggat aaaattcttg tccgccagct cggtcttcag ccttacgagc caatctccca
    17041 ggctatgcat gaattcaccg atacccgcga tgatagtacc cttgatgaaa tctggctggt
    17101 cgagcactat ccggtattca cccaaggtca ggcaggaaaa gcggagcaca ttttaatgcc
    17161 gggtgatatt ccggtgatcc agagcgatcg cggtgggcag gtgacttatc acgggccggg
    17221 acaacaggtg atgtatgtgt tgcttaacct gaaacgccgt aaactcggtg tgcgtgaact
    17281 ggtgaccttg cttgagcaaa cagtggtgaa taccctggct gaactgggta tagaagcgca
    17341 tcctcgggct gacgcgcctg gtgtctatgt cggggaaaag aaaatttgct cactgggttt
    17401 acgaattcga cgcggttgtt cattccacgg tctggcatta aacgtcaata tggatctttc
    17461 accattttta cgtattaatc cttgtgggta tgccggaatg gaaatggcta aaatatcaca
    17521 atggaaaccc gaagcgacga ctaataatat tgctccacgt ttactggaaa atattttagc
    17581 gctactaaac aatccggact tcgaatatat taccgcttaa ttccatacat caatggccca
    17641 atttacactg ggtcattact cataatacct gctaatgctt tacatctcct tcgcgtttgt
    17701 atattttctt tatcacttgc agaaatgcgg tgccacgcct tgctccgtaa ctcaccccat
    17761 tgattaacct attgaaatag ttgattatgg tgagcaaaag cgttccgttc caattagaca
    17821 taagattatt gtaatttttt aaatattatt tttccatgaa taaaattgga gtaagtgcgt
    17881 ggatagtaat aatcaaattg aaccctgttt aagcagaaag tcgtcagaag gtaaaccaca
    17941 aatatttaca accttacgaa atattgctct taaccttctg actatttttg aagctgtata
    18001 tgtacataaa gggatcgtta atgcagcgaa agtgcttaat ctgcccccct cggcaatcag
    18061 tcagtctatt cagaaactgc gcgttatatt ccctgaccca ttgtttattc gcaaaggcca
    18121 aggtgtcact cctaccgcat ttgcgatgca tctacatgag tatatcagtc agggccttga
    18181 gtccattctt ggcgcgctgg atatcgaagg aagctatgat aagcaacgaa cgataactat
    18241 tgcgaccact ccctcggtcg gagccctggt ccttcctgtc atctatcggg cgattaaaac
    18301 tcactatccg cagcttttac tgcgcaaccc gcccatcagc gacgcggaaa accaactcag
    18361 tcagtttcaa accgatctca tcatcgataa catgttttgc accaatcgta cggtgcaaca
    18421 tcatgttctg ttcaccgaca atatggtgtt aatttgccgc gagggaaatc cactactctc
    18481 tttagaagat gacagagaga ctatcgacaa cgctgcgcat gtacttctgt taccggaaga
    18541 gcaaaatttc agcggtctgc ggcagagagt tcaagaaatg tttccggacc ggcaaatcaa
    18601 tttcaccagc tacaacattt tgacaatcgc tgcactggtt gccaacagtg acatgttagc
    18661 gattattccc agccgttttt ataacctgtt tagccgctgc tggccgctgg aaaaactgcc
    18721 ttttccgtcc ttaaataagg agcaaataga tttctctatc cactacaaca aattcagcct
    18781 gcgtgatccc atcctgcacg gagtaataga tgttatccgt aatgcatttt gaaaaagtat
    18841 tgttacagcc agatcacagc gcagaacgat aaaatggcac aatccaacaa caattttaca
    18901 ttttcgcgac cgctttggct gctttcaggt ccgtttcaat gatatactgc cagtcgttaa
    18961 ttcaaaaata gttgataatt acaacaatct attgaattga aacgctttcc ttcgtaattc
    19021 gcaactggaa cacgcacgct atgagtaaac ccattgtgat ggaacgcggt gttaaatacc
    19081 gcgatgccga taagatggcc cttatcccgg ttaaaaacgt ggcaatagag cgcgaagccc
    19141 tgctgcgcaa gccggaatgg atgaaaatca agcttccagc ggactctaca cgtatccagg
    19201 gcatcaaagc cgcaatgcgc aaaaatggcc tgcattctgt ctgcgaggaa gcctcctgcc
    19261 ctaacctggc ggaatgcttc aaccacggca cagcaacgtt tatgatcctc ggcgctattt
    19321 gtacccgccg ttgtccgttc tgtgatgttg cccacggtcg cccggtagct cctgatgcca
    19381 atgaaccagt gaaactggcg cagaccattg ccgatatggc gctgcgttat gtggttatca
    19441 cctccgttga ccgtgatgac ctgcgcgatg gcggtgccca gcactttgcg gattgcatta
    19501 ctgccattcg ggaaaaaagc ccgcaaatca aaattgaaac tctggtgccg gatttccgtg
    19561 gtcgtatgga tcgtgctctg gatattctga ctgcaacgcc accagatgtg ttcaaccata
    19621 acctggaaaa cgtaccgcgt atttaccgtc aggtacggcc tggggcagat tacaactggt
    19681 cgctgaagct gctggaacgc tttaaagaag cgcatccgga aatcccgacc aagtctggtc
    19741 taatggtggg actgggtgaa accaatgaag aaattattga ggtaatgcgc gacctgcgcc
    19801 gtcatggtgt gacgatgtta acgctggggc aatatttgca gccaagccgc catcacctgc
    19861 cggttcaacg ttacgttagc ccggatgagt tcgacgaaat gaaagccgaa gcgctggcga
    19921 tgggctttac ccatgctgca tgcggtccgt ttgtccgttc ttcttaccac gccgatttgc
    19981 aggcgaaagg gatggaagtt aagtaatcct gtaataatta cttacatctg tctgataaaa
    20041 aacccgcttt ttgaagcggt ttttttgtat cgaacaagat attgagggag cgtcctgctc
    20101 gccacgtcac tctttatgag agagcttttc agcctgaaga tcaacgtctg cgcctttttt
    20161 cgccgcagca tcatcatcat tcatcgcctt cttgaaccct ttaatggccg ctccaaggtc
    20221 tccgcccagc gtacgtaact tcttagtccc aaacagcaga acgaccagcg ccgcaactac
    20281 tagcagtttg gtaatactaa tctcacccat agataccttc ttgacatata accggcaaca
    20341 gaacgcgcct taaaaaccag agaatattaa cggtcattcg acgcgcgcac acaatagcaa
    20401 tctgtaacaa ggtgaatcaa gcgccgagta aaaaaacatc ataataattg cggcggcgca
    20461 aagcgacggt tgtttaagac gggcagttgc gcgcgcacct gacgcacacg ttcgggcgtc
    20521 acttccgcca taatgagtgc aggcatttct gacgctgccg caatggtgac gccaaaggga
    20581 tctataatcc ggctttgccc gatatttttg ttcccgcact cgcccgccgc caccatataa
    20641 caggtggtat ccagcgcacg agcggcaagc aacgttgacc agtgatgctc tttgagcggc
    20701 ccgcgaaccc aggcggcagg aagtaccagg atttcagctc cctgtaatgc ctgtgccagc
    20761 gccagctctg gaaagcgtaa gtcataacag gtcatcagac cgaccttcat cccttccacc
    20821 tccagtaacg gagcgatttc attaccagca tcaacacggc gtgattcctg aatggcaaat
    20881 gcatcataga gatgcagttt ggcataacgg gcgacgatgt ttcctgcctg aagtgccacc
    20941 agcatattcc atgcgcgccc cggcgttgaa ggaacatgaa tcgtcagaat tgtcgtcatc
    21001 atgttacgtt tactttctcg ccgtaaacgt ccgaggaatt cgccttccag cagctgtgct
    21061 gatttaaccg atagatctgc atcatgatca tcgcgtgcca gcaatgcttc cggcaggaca
    21121 aacagcgata cgtcgttttc cgccgcctgc gccatcaacg aggcacaaat ctcagcgttc
    21181 ttttcccaca cagatgtaac agcaaactgt cctgcagcaa ccagcattgc cacctcctgt
    21241 cagagtcgta aaattcgcca acgacgatta ttcggcgtta cacttatcac tcatacaaat
    21301 caaatagcag gattttgcag tgttacaact tcttttagca gtttttattg gcggtggtac
    21361 gggaagcgtg gcgagatggc tgttaagtat gcgatttaac ccactgcatc aggcgattcc
    21421 gttggggacg ctgacagcaa acctgattgg ggcattcatc ataggaatgg gattcgcatg
    21481 gttcagcagg atgacgaaca ttgatccagt gtggaaagta ttaatcacca ccggattttg
    21541 tggcggtcta acaaccttct caacattttc ggcagaagtg gtgtttttgt tacaagaggg
    21601 tcgctttggc tgggcattac tgaacgtttt cgtcaacctt ctggggtctt ttgccatgac
    21661 agcactggct ttctggctgt tttcggcctc aaccgcacac taaagaccca aaaaaaaccc
    21721 gctgattaag cgggttttga attcttgctg acgtatctta cagagcgatt acgtttgcag
    21781 cagaagggcc tttggcaccg ttagtgattt cgaactctac gcgctgacct tcagcaagag
    21841 ttttaaaacc attagtctgg attgcagaga agtgtacgaa cacgtctttg ctgccgtctt
    21901 ccggagtaat gaaaccgaat cctttggact cattaaacca cttaacgtta cctttaatct
    21961 tagacatcaa aattaccttt acatgaaaaa tagacacaaa tgctgcgtcg gttaccagta
    22021 caccaattgt ggtacgcttt gtccagtgca actttactaa aaagtgataa aagtcgcgtt
    22081 atttttgatg ttacttattt tagctattga ttttaaagaa gttactaaaa cttcatttgt
    22141 ctcaaaactg aaagcgcatc caggcaaagt acacattgcc attgttgtag gtacccggaa
    22201 tgtaggtcat ctgaaaagtc actgggccat aacccacgga ggccaatggc agtagaaccg
    22261 ggagagggat gtaattccag ttatcgcgtg ccgttacgcc agcggtgaat cccagaccta
    22321 aatgaaaatt ttcatccgcc agcggtcgcc aggtactttc ccatccgtat ccggcaatcg
    22381 gttcccattt gttccacgag tccttaaatg ccatggcata caggccatgc cagtttcctt
    22441 tttcatccca acgcgacagg ccaaaaccgc caccccacgg tcgctcgtta tagcgatcgg
    22501 ttttttcttt gtcgtaagcg aaacgtgcat gccaggtgat ggcaggaata tataaatcat
    22561 aatgttcagg ctgttgccag gttggtgcaa tattttctct aaacgttgtc atccactcat
    22621 ctgcgttagc aaaaacttta ccaacgctga ttaactgaat aaaaacaaag gaaaagatag
    22681 cgacatattt actcacgttc atttgtgacc ataaaacatt tatcaaaaat ctactactag
    22741 catagcaaag ctacaattaa cataacctta atagacccaa cataaagaat aatctgaata
    22801 gctgctctat ttatttccgc ttgttcaagt taaatatttc cgcgcatcga ttaaagatga
    22861 tgcgtcgttt tctgcgatgg gaatagtcaa aaaagaaaaa ccaagtcttt tttgatgaca
    22921 aaatgcaatc aaggaaaaat tattttattt tttaacgaga tacaacaatc accttaacaa
    22981 agtatataat atatatcgtc aacctatgct catattagat tattttttga gcgcacagcc
    23041 gcagctaaca ccattgcaat taacaaattt gcatcaatcc accatcaatt tgcacacatt
    23101 attatgtgat aattgccaac cgctaaatat gcgttttgtt atctatgtat aaaaacagta
    23161 acttcaatgt cttaatggca gtttttcttg attttaatca gcattcatcg ccaatttatt
    23221 gggcatattt tttccttaag ctttaggaat tttttattat ttactttggg gcctggagac
    23281 aggaaaaatt atgctgacat tcattgaact ccttattggg gttgtggtta ttgtgggtgt
    23341 agctcgctac atcattaaag ggtattccgc cactggtgtg ttatttgtcg gtggcctgtt
    23401 attgctgatt atcagtgcca ttatggggca caaagtgtta ccgtccagcc aggcttcaac
    23461 aggctacagc gccacggata tcgttgaata cgttaaaata ttactaatga gccgcggcgg
    23521 cgacctcggc atgatgatta tgatgctgtg tggatttgcc gcttacatga cccatatcgg
    23581 cgcgaatgat atggtggtca agctggcgtc aaaaccattg cagtatatta actcccctta
    23641 cctgctgatg attgccgcct attttgtcgc ctgtctgatg tctctggccg tctcttccgc
    23701 aaccggtctg ggtgttttgc tgatggcaac cctatttccg gtgatggtaa acgttggtat
    23761 cagtcgtggc gcagctgctg ccatttgtgc ctccccggcg gcgattattc tcgcaccgac
    23821 ttcaggggat gtggtgctgg cggcgcaagc ttccgaaatg tcgctgattg acttcgcctt
    23881 caaaacgacg ctgcctatct caattgctgc aattatcggc atggcgatcg cccacttctt
    23941 ctggcaacgt tatctggata aaaaagagca catctctcat gaaatgttag atgtcagtga
    24001 aatcaccacc actgctcctg cgttttatgc cattttgccg ttcacgccga tcatcggtgt
    24061 actgattttt gacggtaaat ggggtccgca attacacatc atcactattc tggtgatttg
    24121 tatgctgatt gcctccattc tggagttcct ccgcagcttt aatacccaga aagttttctc
    24181 tggtctggaa gtggcttatc gcgggatggc agatgcgttt gctaacgtgg tgatgctgct
    24241 ggttgccgct ggggtattcg ctcaggggct tagcaccatc ggctttattc aaagtctgat
    24301 ttctatcgct acctcgtttg gttcggcgag tatcatcctg atgctggtat tggtgattct
    24361 gacaatgctg gcggcagtca cgaccggttc aggcaatgcg ccgttttatg cgtttgttga
    24421 gatgatcccg aaactagcgc actcttccgg cattaacccg gcgtatttga ctatcccgat
    24481 gctgcaggcg tcaaaccttg gccgtaccct ttcgcccgtt tctggcgtag tcgttgcggt
    24541 tgccgggatg gcgaagatct cgccgtttga agtcgtaaaa cgcacctcgg taccggtgct
    24601 tgttggtttg gtgattgtta tcgttgctac agagctgatg gtgccaggaa cagcagcagc
    24661 ggtcacaggc aagtaaatag taatgccgga ggcaagtttc ctccggcttt atcatgtcac
    24721 ccactgtggt atatgcgttg tggtctgcca actttgccgt gaacaatttc agcaataatc
    24781 agatggcggc tggcgcaata ttcaagataa cgtctggcag acgtgcggct gatggtcagt
    24841 gcctgcgcca ccgtttctgt cgtatgttgc acaccaggct ctttaaacag ttttcgcacc
    24901 gcgtttagcg tcaagggatc aatgccggtc ggcagttcgt ctttaggttc accgcgagca
    24961 taggcattaa acatctcatc aatttgcttc tggctggcgc tatcaatact ttccagcata
    25021 tgtttacgct ggcggaaacg ggttagcgtt tgccccagcc gttcataggc aatgggctta
    25081 atgagataat caaatacacc acaacgtacg gcttcagaca ccgtttccat atcgctggct
    25141 gcagtggtaa acaccacgtc gccgggataa tgcgcctgca ccagttcatg caataaatta
    25201 atccctctgc cgtcaggaag atagttatcg agcaagatta gccccggctt aaaacgctcg
    25261 atcatcattc gggcctgcgc caggtttccc gccagtaata tctgactgaa tccgggaatg
    25321 tgacgaatat attccgcatg catctctgcc agcggcgttt cgtcctcaac gatcaatagg
    25381 gttaatggag ctgtcattag gtttcacttt cggaatatag attgaaaata aggtaccgca
    25441 gggatcatta tcttcgagag tgataacacc accgcagcgc gttacgtagc tggcaatcaa
    25501 gtacaaccca atgccatgtt caccgggctc gtcagcacgc gtactgaccc cctgctcaaa
    25561 tattttgtct cgtagagact ctggaacgcc gcagccctga tcggcgactt caatcaccac
    25621 atcatcgcct tcatcgctga ggaataattc aacgatcttg tttccttcat cgctacgcag
    25681 gctggcttcg aaggcgttat caagtaaatt gcccacaatg gctgcaaact cggtgctatc
    25741 cagtcctggc ggcagttgcg aaagctggct accggggaca atgatcattt ttagccccag
    25801 ttcccgggcg cgctgcactt taccaaaaag cagccccgcc acctagcgat cggcaaacgc
    25861 ctcgcgcagg ctgtcaataa gctgttgctg ggcctgagac tccccctgca ccatcgccag
    25921 cacgcgatca tactctttca tctgcaacag accattgagc gtcgacatcc aattgagatg
    25981 ctcgtgtcgc aatgtacgaa ggctctcaac gtattgtttt atttgcgtca gttgcgcatt
    26041 gagggtggaa atttcgtctt tactgcgaaa gctgataatg gcccccagca aatcatcacc
    26101 tgaacgaata gcttcccgat tggcaataac gctcagaccg ttaaagttag ccaccatatc
    26161 ctgacgtttt tcatcaatct gttcggtaaa gaaatcggcg ggcctgacca cttcagcaat
    26221 gggtttaccc aaccattgcc gtccggggga actcagcccc agcatctttc ttgcgttacg
    26281 attgatggcg gtaatgtaac cgtgcggatc caccgcaatc agcccttcat aaaccgaact
    26341 aaacagcgcc tcttgctgac ggaccacgcg tgcgatttgc tttggctcca tgcccatcat
    26401 ctgccgacgg atatgcgcgg ccaggaacca cgacagcaac atcagaatcc ctaacagcac
    26461 gacaaacaca cctgccatcg gtaataaaaa ctcagcccgc cagctatcga ttttactcac
    26521 caggtagcca atcgacacca cgccgatgac ttttccatcg tcatcaaaga ttggcgtttt
    26581 ggcgcgcatc gccatcccca ttgacccttt cccggtaatg aagtagctct cccctttctc
    26641 cagcgcgccc tgtttggtga actgcatagg ataaccaatt ttctccggat taggatggta
    26701 aaggcggatc gagtgccggt cgccatcacc acataatcaa aatcggtatc tctttgtaat
    26761 ttgttagcga tggtcgccag ccgtttgtag tcacgcgttt tcaccgcaga gatgacactg
    26821 tcattggagg caataatttt cgcctgattc attgccatgt cgcgtacatg aagcgttaaa
    26881 tagtcctcaa aactggccgt aaaatattgc gccaaggctg caatgacaaa tattgagaac
    26941 accagaatca gcaaaaagat acgcagcgga aatgccagtc tttggaaaaa tgcaaactgt
    27001 ttattctcgt taagctgcaa cattgttttc cttgcgggtt atcccgagcc tctttgacag
    27061 atgtaattaa aatgttgaat caaaatacat agatattaat tatgatcgtg gcaaatttta
    27121 ttcattaaat caattaaatc acttaaacct gcaggtcatt tcgtaattac attaattaaa
    27181 aaacttaaac cattaaataa ataaaaattt cacgccgaaa tactccttag gatgtatagc
    27241 gaaaggagaa aaagatatac ctcgatcacc cccctttctc ccaagtgaaa ataaaaggtt
    27301 atcagtttgc aacattgaac aacattcgtt gcaaatcgat aacaacatgc accttcagga
    27361 tactatttat tatgttcggc aatgatattt tcacccgcgt aaaacgttca gaaaataaaa
    27421 aaatggcgga aatcgcccaa ttcctgcatg aaaatgattt gagcgttgac accacagtcg
    27481 aagtatttat taccgtaacc cgcgatgaaa agcttatcgc gtgcggtgga attgccggaa
    27541 atattattaa atgcgttgct atcagtgaat ccgttcgcgg tgaaggactg gcgctgacat
    27601 tagccactga actgataaac ctcgcctatg agcggcacag cacgcatctg tttatttata
    27661 ccaaaaccga atacgaggcg ctgttccgcc agtgcggttt ttccacgctg accagcgtac
    27721 ccggcgtgat ggtgctgatg gaaaacagcg ccacgcgact gaaacgctat gccgaatcgc
    27781 tgaaaaaatt tcgtcatcca gggaacaaga ttggctgcat tgtgatgaac gccaatccct
    27841 ttacgaatgg tcaccgttat ctgattcaac aagctgcggc acagtgcgac tggttgcatc
    27901 tgtttttagt caaagaagat tcttcacgct tcccctatga agaccggctg gatctggtgt
    27961 taaaaggcac cgccgatatt ccacgcctga ctgtgcatcg cggctccgaa tacatcatct
    28021 cccgcgctac gttcccttgc tacttcatta aagaacagag cgtcattaac cattgttaca
    28081 ccgaaattga tctgaagatt ttccgtcagt acctcgctcc cgcactgggt gtaactcacc
    28141 gctttgtcgg tactgaaccc ttttgtcgcg ttaccgccca gtacaaccag gatatgcgct
    28201 actggctgaa aacgccgact atctccgcac cgcccatcga actggttgaa attgagcggc
    28261 tgcgttacca ggagatgccg atatccgctt cccgggtacg tcaactgctg gcgaaaaacg
    28321 atctcacggc tatcgcgccg ctggtccctg cagtcacgct gcattatttg cagaacctgc
    28381 ttgagcactc ccgccaggac gcggcagctc gtcaaaagac ccccgcatga gaaacaggtg
    28441 aaaaatgaaa ataaaccagc ccgccgttgc aggcaccctt gagtctgggg atgtgatgat
    28501 acgcatcgcc ccactcgata cgcaggatat cgacctgcaa atcaacagca gcgttgagaa
    28561 acagtttggc gatgcaattc gcaccaccat tctggacgtt ctcgcccgct acaacgtgcg
    28621 cggcgtacag ctgaatgtcg atgacaaagg cacactggac tgcattttac gtgcacgact
    28681 ggaagccctg ctggcacgcg ccagcggtat cccgactctg ccatgggagg attgccaatg
    28741 atttccgctt cgctgcaaca acgtaaaact cgcacccgcc gcagcatgtt gtttgtgcct
    28801 ggtgccaatg ccgcgatggt cagcaactcc ttcatctacc cggctgatgc cctgatgttt
    28861 gacctcgaag actccgtggc attacgtgaa aaagacaccg cccgccgcat ggtttatcac
    28921 gcgctgcaac atccgctgta tcgcgatatt gaaaccattg tgcgtgtcaa cgcgctggat
    28981 tccgaatggg gtgttaacga cctggaagcc gtcgttcgcg gtggtgcgga cgttgtgcgt
    29041 ctgccgaaaa ccgataccgc tcaggatgtt ctggatattg aaaaagagat cctgcgtatc
    29101 gaaaaagcct gtggtcgtga acccggcagc accggcctgc tggcggcgat tgaatctccg
    29161 ctgggcatta cccgcgcagt ggaaatcgct cacgcttccg agcgtttgat cggtatcgcc
    29221 ctcggtgcag aagactatgt gcgcaacctg cgtacagaac gctccccgga aggaactgaa
    29281 ctgctgttcg cacgctgttc cattttgcag gccgcgcgct ctgcgggtat tcaggcgttc
    29341 gataccgtct attccgacgc taacaacgaa gccggattcc tgcaagaagc cgcccacatc
    29401 aaacagctgg gctttgacgg caaatcgctg atcaacccgc gtcagattga tctgctgcac
    29461 aacctctacg caccgaccca gaaagaagtg gatcacgccc gccgcgtcgt agaagccgct
    29521 gaagccgccg ctcgcgaagg cctcggcgtg gtttccctga acggcaagat ggtggacggt
    29581 ccggttatcg atcgcgcccg tctggtgctc tcccgtgcag aactttccgg catccgcgaa
    29641 gaataaggca atcaaaatga cgcagaaaat tgaacaatct caacgacaag aacgggtagc
    29701 ggcctggaat cgtcgcgctg aatgcgatct tgccgctttc cagaactcac caaagcaaac
    29761 ctaccaggct gaaaaagcgc gcgatcgcaa actgtgtgcc aacctggaag aagcgattca
    29821 tcgctctggt ttacaggacg gcatgacggt ttccttccat cacgctttcc gtggcggtga
    29881 cctgaccgtc aatatggtga tggacgtcat cgcgaagatg ggctttaaaa acctgactct
    29941 ggcctccagc tccctgagtg attgccatgc gccgctggta gaacacattc gccagggcgt
    30001 ggttacccgc atttatacct ctggcctgcg cggtccactg gcggaagaaa tctcccgtgg
    30061 tctgctggcg gaaccggtgc aaatccactc tcacggcgga cgtgtgcatc tggtacagag
    30121 cggcgaactg aatatcgacg tggctttcct cggcgtccca tcctgtgatg aattcggtaa
    30181 tgccaacggt tacaccggta aagcctgctg tggctccctc ggctatgcaa tggttgatgc
    30241 cgacaacgca aaacaggtcg tgatgcttac cgaagaactg ctgccttatc cgcataatcc
    30301 ggcaagcatt gagcaagagc aggttgattt gatcgtcaaa gttgatcgcg ttggcgatgc
    30361 tgcaaaaatc ggcgctggtg cgacccgtat gaccactaac ccgcgcgaac tgcttattgc
    30421 ccgtagcgct gcggatgtga ttgtcaactc tggctacttc aaagaaggtt tctccatgca
    30481 aaccggcacc ggcggcgctt cgctggcggt aacccgtttc ctggaagaca aaatgcgtag
    30541 ccgcgatatt cgcgccgact tcgccctcgg cggtattact gcaacgatgg ttgatctgca
    30601 cgaaaaaggt ctgatccgca aactgctgga tgtgcagagc tttgacagcc atgctgcgca
    30661 atcgctggcc cgtaacccca atcacatcga aatcagcgcc aaccagtacg ctaactgggg
    30721 ttcgaaaggc gcatcggttg atcgtctcga cgtggtggta ctgagcgcgc tggaaattga
    30781 cacccagttc aacgttaacg tgctgaccgg ctctgacggc gtactgcgtg gtgcttccgg
    30841 tggtcactgc gataccgcga ttgcctctgc gctttccatc atcgtcgcgc cgctggtacg
    30901 cggtcgtatt ccgactctgg tggataacgt gctgacctgc atcaccccgg gctccagtgt
    30961 cgatattctg gtcacagacc acggtatcgc agttaacccg gcacgtccgg agctggcaga
    31021 acgtctgcag gaagcgggca ttaaagtggt ttccattgag tggctgcgtg aacgtgcgcg
    31081 tctgctgacc ggtgaaccac agccgattga attcaccgac cgcgtcgttg ccgttgtgcg
    31141 ttaccgcgat ggctcggtga tcgatgttgt acatcaggtg aaggaataag ccatgcacct
    31201 gcttcctgaa ctcgccagcc accatgcggt gtcaattccc gagctgctcg tcagccggga
    31261 tgaaaggcaa gcacggcaac acgtctggct caagcgccat cctgttccac tggtctcctt
    31321 taccgtggtt gcgcctaggc cgattaaaga cagtgaggtc acacgccgaa tttttaatca
    31381 tggcgtgaca gccttgcgtg ccttagccgc aaaacagggc tggcaaattc aggagcaggc
    31441 tgcactggtt tccgccagcg ggccggaggg tatgttgagc attgccgccc cggctcgcga
    31501 cctcaagctc gccaccattg agcttgaaca tagtcatcct ctcgggcggt tatgggatat
    31561 cgatgtcctg acgcccgaag gcgaaattct ctcccgccgc gactattcac tgccgcctcg
    31621 ccgctgcctg ttgtgcgagc aaagcgcagc cgtctgcgcg cgtggaaaac ccatcaactg
    31681 accgatttac tcaaccgcat ggaggcactg ctgaacgatg tcgatgcctg caacgtcaac
    31741 taaaaccaca aagcttgcga cgtcattaat cgatgagtac gccctgctgg gctggcgcgc
    31801 catgctgact gaagtcaatc tgtcaccgaa accaggtctc gtggatcgca ttaactgcgg
    31861 tgcgcataaa gatatggcgc tggaagattt ccaccgcagc gcgctggcga ttcagggctg
    31921 gctaccccgt ttcattgaat ttggtgcctg tagtgcggaa atggcaccag aagcggtact
    31981 ccacggatta cgcccaattg gtatggcttg caaaggtgat atgttccgcg ccaccgcggg
    32041 cgtaaacacg cataagggca gcattttttc tttagggcta ctgtgtgcgg caattggccg
    32101 tttgcttcag ctcaaccagt cgctaacgcc aacaaccgtt tgttctacgg cggcaagttt
    32161 ctgccgtggc ctgaccgatc gcgaactgcg taccaataat tcacaactga cggcaggtca
    32221 acggttgtac cagcagcttg cccttaccgg cgcacgcggt gaagccgaag cgggttatcc
    32281 actggtgatc aaccacgcct tgccgcatta cctcactctg ctggatcagg ggttagatcc
    32341 tgaactggca ttgctcgata ccttgctcct actgatggcg atcaacggcg ataccaacgt
    32401 tgcttcgcgc ggtggcgagg gggcctgcgc tggctacagc gcgaggcgca aacattattg
    32461 caaaaagggg gcattcgaac ccccgccgat ctcgattatc tccggcagtt cgacagggag
    32521 tgtatcgaac gaaatctcag tccaggcggc agtgccgacc tgctgatcct tacctggttt
    32581 ttagcacaga tttaattatt taagcacttg ataaatttgg aaatattaat tttcggagaa
    32641 cccgtatgtc tttagcaaaa gataatatat ggaaactatt ggccccactg gtggtgatgg
    32701 gtgtcatgtt tcttatccct gtccccaacg gtatgccacc acaggcatgg cattacttcg
    32761 ctgtgtttgt ggcaatgatt gtcggcatga tcctcgagcc aattccggca acagcgatca
    32821 gttttattgc ggttactatt tgcgttattg gcagtaatta cctgctcttt gatgccaaag
    32881 aattagctga cccagcgttt aatgcgcaaa aacaggcgct gaaatggggt ctggctggtt
    32941 tttccagcac cacggtatgg ctggtatttg gcgcatttat ttttgcatta gggtatgaag
    33001 tttccgggtt aggtcgtcgc attgcccttt tcctggtgaa attcatgggc aaacgcacgc
    33061 tgacgttggg ttatgcgatt gtcattatcg acattctgct ggcgccgttt acaccgtcca
    33121 acaccgcgcg taccgggggt acggtttttc cggtcattaa aaacctgccg ccgttgttta
    33181 aatcattccc caacgatccg tccgcgcgtc gtattggcgg ctatttgatg tggatgatgg
    33241 tcattagtac cagtctgagt tcgtccatgt ttgtcaccgg tgcggcacca aacgtgctgg
    33301 gtctggagtt cgtcagcaaa attgccggta tccagattag ctggttgcag tggttcctct
    33361 gcttcctgcc ggttggggtt atcttgctta tcattgcgcc gtggctttcc tacgtgctgt
    33421 acaaaccgga aatcacacac agtgaagaag tggcaacctg ggcgggtgat gaactgaaaa
    33481 ccatgggtgc gctgacacgc agagagtgga cactgattgg ccttgtattg ctcagcttag
    33541 gtttgtgggt ttttggcagt gaagtcatta atgctactgc agttggtctg ctggcagttt
    33601 cgctaatgct ggccctgcac gttgtgcctt ggaaagatat tacccgctat aacagcgcat
    33661 ggaacacgct ggtcaacctg gcaactctgg ttgtgatggc taacggcctg actcgttctg
    33721 gctttattga ctggttcgcc ggtaccatga gtacgcacct ggaaggattc tcaccaaacg
    33781 caacggtgat tgtactggtt ctggtgttct actttgcaca ctacctgttt gccagcctgt
    33841 ctgcgcacac cgcaaccatg ctgccggtta ttctggccgt cggtaaaggt attccgggcg
    33901 taccaatgga acaactgtgt atcctgctgg tgctgtctat cggtatcatg ggctgtctga
    33961 cgccctatgc aaccggtcct ggggtgatta tttacggctg tggctatgtg aaatcaaaag
    34021 attactggcg tcttggcgca atcttcgggg tgatttatat ctctatgttg ctgttggttg
    34081 gctggccgat tctcgccatg tggaactaat acgttcgcca aacgctgaat aaatcatcac
    34141 gcccgccagg taagcccacc tggcgggcgt gatgatttaa tagatagtat tcagtgtatg
    34201 tatgagttcc acacccatta tgaaagcatt ctggcgtaac gccgcgttgc tcgcggtttc
    34261 tctgcttccc ttctcttctg ccaacgccgt agcgttgcag gcaaaacagt atggcgattt
    34321 tgatcgctat gtcctggccc tctcctggca aaccggattt tgccagagtc aacacgatcg
    34381 aaatcgtaac gaacgagatg aatgtcgcct gcaaaccgaa acgaccaaca aagctgattt
    34441 tctgaccgta catggtctgt ggccaggatt gcctaaatcg gttgctgccc gtggtgttga
    34501 tgaacgccgc tggatgcgct tcggttgcgc tactcgccca atcccgaatc taccagaagc
    34561 gcacgccagc cggatgtgtt catcgccgga aaccgggtta tcactggaaa cggccgctaa
    34621 actaagtgaa gtcatgccag gagctggcgg acgttcctgc ctggaacgct acgaatatgc
    34681 caaacacggt gcctgctttg gttttgatcc ggacgcatac ttcggtacga tggtacgcct
    34741 gaatcaagaa attaaagaga gcgaagccgg aaaattcctt gcggataatt acggtaaaac
    34801 agtgagccgc cgtgactttg acgccgcctt tgccaaaagc tggggaaaag agaacgtgaa
    34861 agcagttaag ctaacgtgcc agggtaaccc tgcgtatttg actgaaattc agatctcgat
    34921 caaagctgac gccatcaacg ctccgctttc tgcaaactca ttcttgccac aaccacaccc
    34981 aagcaactgt ggcaaaacct ttgtgattga taaagtgggt tattaatcat ctgatttaca
    35041 aaacacgcta attcgtcttc cataaaccgt gacgattaag aattatacat aatgcgctgc
    35101 attgaggaat tccctgaatg tgacgcaaat cacttcaaag agtgagcaac agtcagtatc
    35161 atcatgtgag ttaaaccctc gccgcctgac ggtgagggtt ttcttttggg tatgtttatc
    35221 tgcgacactc gcagtaccga cgacatggag taaaaatgtc cagaccaact atcatcatta
    35281 acgacctgga tgccgaacgc atcgatattc tgctggagca acccgcctat gctggtttgc
    35341 caatcgccga cgcgttaaac gcagagttgg atcgcgccca aatgtgttcg ccagaagaga
    35401 tgccacacga cgtggtgaca atgaacagcc gggttaaatt ccgcaatctt agcgatggcg
    35461 aagtgcgtgt gcgcacgctg gtgtatccgg caaaaatgac cgatagcaat actcagcttt
    35521 ccgttatggc tccggtaggt gccgcactgc tggggctgcg cgttggcgat tccattcact
    35581 gggaacttcc gggcggcgtt gcaacccacc ttgaagtgct ggaactcgaa taccagccag
    35641 aagctgctgg cgactacctg ctttaatccc atctgcacaa gcgataactc gctttgccca
    35701 gaggatgcac tcgcatcctc tttacgcaaa atcagcaatt tttcctggtt ctcactgttc
    35761 acttttgctg caaaattatt ccgtttcgtt tgtgggaata accatggcag aagcatttta
    35821 catcctgata ggatttctga ttatggcggc gattatcgtc atggctgtcc tttacctcga
    35881 aaaccactcc tgacgatcat attgttcccc ccggcatcgc attcaccaga cctgaaactg
    35941 ccttctgcgc ctcctctgcg ctttgtgcac cgggtaccag aatcacctta cggcactcct
    36001 cttcacgttt ttcgaaaatc tcatatcccc gggcggcctc ttcaaacggc atatagtggg
    36061 taacaatttc ttctggtttc agtaatcctt tctcaattaa cggtaataat tctcccagcc
    36121 atgcgtgaac gtgggtctgt cccattttaa acgtcaaccc tttatcaaag gcgtcaccaa
    36181 acaggaaacc gtgaataaat ccagcgtaga cgcccggtac gctaacaatg ccgccacgcc
    36241 tgaccgccgc aatacactgg cgcaacgctt taccgctgct gccctccagt ttcaggttag
    36301 tcagcaccgt ttccgtagtg ctgcctttcg cttcaaaacc gacggcgtct attactgcat
    36361 ccacgccccg gtgacctgcc gtttgttcaa taattgactg tgccggatcg ctatcttcat
    36421 cgaaattaat cgggatcgcg ccgtagcggt cagcggcgaa actcaagcgg tagggatgat
    36481 gatcaacaac aaaaatctgt tccgcaccga gcaaccgtgc acaggcgatt gtcaacaatc
    36541 ccactggacc ggcaccatag actgcaacgc ttgaaccttg ttggatctgc gcattttttg
    36601 ctgcctgcca tgccgttggc agaatatcag aaaggaaaag ggctttatca tctgaaagca
    36661 aaggcggtac tttaaacggc cccacattcc ctttagggac gcggacatat tccgcctgtc
    36721 caccaggaac gccaccatac aggtgactat aaccaaacaa tgccgcggga gctggtatct
    36781 gttttttatt gagcgcagcg cctttacccg cattggtatt ttcgcaggcg gcatattgct
    36841 gcattcgaca gaaaaaacag tcgccacaag caatgacaaa cggaattacc acccggtcgc
    36901 ctttttgcaa attttttacg tcctttccgg tttcaacgac ttcccccata aattcatgac
    36961 caaaaatatc gccatgttta acctggggta ttttgcctcg ataaagatgg agatcagagc
    37021 cacagatcgc cgttgccgta atacgcagaa taatatcatc tgcctgttca atgcccggat
    37081 cgggaacatt ttctacctga acgtgatgtg ggccgtgata agtcaatgct ttcatgcaac
    37141 ctccagagac agttcaaaaa agagtcagtc tttaagggta gctatcacag cgggaaaacg
    37201 ggcggtaccg caggttttgg gagaattcct ggtgttcagt gagaatatat taatcacaga
    37261 aaccgttcgt aaggaaaaag aaccagacaa atatcaggga taaatattat aatcatggcg
    37321 aatgatttgt tcatgattaa cagggagaaa gggttatgta taagacaatc attatgccag
    37381 ttgatgtatt tgaaatggaa ttgagcgaca aagctgttcg ccacgctgaa ttcctcaccc
    37441 aggatgacgg agttattcat ctacttcacg tactacccgg gtcagccagc ctgagcctgg
    37501 accgttttgc cgctgatgtg cgtcgttttg aagagcatct gcaacatgaa gcagaagaac
    37561 gtctgcaaac gatggtcagc cacttcacca tcgatccttc ccgcattaaa caacatgtcc
    37621 gttttggtag cgtgcgggat gaagtcaatg agttggcaga agaactgggg gctgatgttg
    37681 tagttatcgg ttctcgcaac ccatcgattt cgacccatct gttaggttct aacgcctcga
    37741 gcgtgatccg ccacgccaat ctgcctgtac tggtcgttcg ctaacagata aaagtattta
    37801 tgccgccctg cctggaacat cccggcaggg ctttttaatg ccataaaaaa gccgctaggt
    37861 ttgaccccgg cggctaagca attgcaggtg aatcttactt cttcttatgc agttttggtg
    37921 cgaatcaggt agtcaaaagc actcagagag gctttggcac cttcgccagt ggcgatgatg
    37981 atctgcttgt acggaaccgt cgtacagtca cccgctgcga atacgccttt gacgttggtt
    38041 tcgcatttcg catcaatgat aatctcaccc atgcggttac gttcgactgc gccttcgagc
    38101 cagttggtgt tcggcagcag accaatctgc acgaaaatac cggccagttc gatgttgtga
    38161 atatcgccgc tgacacgatc tcgatattcc agaccaacga ctttgctgcc gtcgcctttc
    38221 acttccgtgg tttgcgcatt cagaataatg tcgacgtttt tcaggctgcg cagtttgtcc
    38281 tgcagaacct ggtcggcttt catttctggc gcaaattcca gcagcgttac gtgctcaacg
    38341 atacccgcca ggtcaattgc cgcttccacg ccggagttac cgccgccgat aaccgctacg
    38401 cgtttacctt taaacagcgg gccgtcgcag tgcgggcagt aggtcacgcc tttggtgcga
    38461 tactgatctt cgcccggaac gttcatgttg cgccattttg caccggtcgc cacgataatg
    38521 ctgcgtgctt tcagtaccgc gccagaagct gtttcaatct gatgcagacc accttcaact
    38581 gctgctggga tcagtttgct ggcgctctgg ctgtcgatca catcaacgtc gtattcatca
    38641 acgtgaactt tcagtgcgcc tgccagcttc tgcccttcag tcttcggtac agaaatgtag
    38701 ttttcgatat caacggtatc gaggatctga ccaccaaaac gttcgcccat cagaccggta
    38761 cggatgcctt tacgtgcgga gtaaattgct gccgctgcac ccgccgggcc ggaaccgacg
    38821 attaatacgt cataagcatc acgcttgttc agctcttctg ccgcacgttt ttccgcgccc
    38881 gtatcaattt tggcaacgat ttcagtcaac gtcatgcggc cctgaccaaa ctctttcccg
    38941 tttacgaaca ctgccggaac gcccatcacg ttgcgatcgg tgatttcgtt ctggaaggtg
    39001 ccgccgtcaa ttgcagtgtg cttgatgcgc gggttcagta cgctcatcag gttcagcgcc
    39061 tgcaccacgt ccgggcagtt atggcaagag agcgagtaat aggtttcgaa ttcaaaatca
    39121 ccgtcaatat ggcgaatctg ctccagcaga gactgcgctt ctttcgacgg atgaccaccg
    39181 gtccacagca acgccagtac cagcgaggtg aactcgtggc ccagcgggga gcctgcaaaa
    39241 cgtggcccct ggttggaacc tgggttggtg atcaggaaag acggcttacg caccggcaag
    39301 ctgttatctt ctttaaaggt gactttgtct gacagttctg cgatttcagc caacagttcc
    39361 ttgatttctg ccgatttagc gctgtcatcc agcgtggcaa ttaactcaac aggcttggtc
    39421 aatttctcaa ggtaagcctt gagttgagtt ttcatatttg tgtcgagcat gtttatctcc
    39481 tgggctttaa acatcatcat gcaagcggcc tctacggcta cctggatgca gcttgcatca
    39541 tagtgcgggg aagaaaatcg ggtgccgcag cacccgaaga attaggtgaa tttccgaagt
    39601 atttcgcgcc ggagttggta gcgcgaaaga cgaaggaaat ttagatttta ccaaccaggt
    39661 ccagagacgg agccagagtt gcttcacctt ctttccattt agccgggcaa acttcacctg
    39721 ggtgagaagc tacgtactgt gctgctttga ttttacgcag caggtcagac gcgtcacggc
    39781 caatgccttc agcggtaact tcgattgcct ggatgatacc ctgcgggtca acaacgaagg
    39841 tcgcacggtc agccagacct tcatcttcac gcatgttgtc gaagttacgg gtcagggcgc
    39901 cagtcgggtc gccgatcatc gcatatttga ttttagcgat ggtttcagag ctgctgtgcc
    39961 atgctttgtg ggtgaagtga gtatcggtag atactgcgta tacgtctacg cccagtttct
    40021 gcagttcttc gtagtggtca gcaacgtcac ccagttcggt cgggcatacg aaagtaaagt
    40081 cagccgggta gaagaagaag acgctccagc ggccttcggt atctttttcg gtgatttcga
    40141 tgaattcgcc gtttttgaat gcctggtttt taaaaggttt aattttggtg ttaatcaagg
    40201 acatctatac ttcctccgtg ttttcgatga gatgtaaggt aaccaatttt tgccgattcg
    40261 gctaatgcgt ttccattatc aaatcgataa gttttacctt acaaccttcg taagacaact
    40321 ttgtgaactt tgcaccgcca gcggcgataa aaagtaaaat ggcccccttt ccaggtgacc
    40381 gtgtaatctg aactaccctt tggtatcttc agcgcctgcc tgcaggctga ggcgttgccc
    40441 ttacaaatgc aacaacgaca tggattacaa caccctcata aacaaagggc aatcacctga
    40501 tctaagctct tacctatgac agtgataggt tatgcctttt actcgacttt tgcactgact
    40561 gaaaaggaca aattaatgtt aaaaaagata cttttactgg ctctgcttcc tgcaatcgcc
    40621 ttcgcagagg aacttcctgc tccagtaaaa gcgattgaaa aacagggcat tacaatcatc
    40681 aaaacgttcg atgcccccgg aggaatgaaa ggttatctcg gaaagtatca ggatatgggc
    40741 gtcaccatct acctgactcc agatggtaag cacgctatct ctggttacat gtacaacgag
    40801 aaaggtgaaa acctgagtaa cacacttatc gaaaaagaaa tttacgcacc agccggacgc
    40861 gaaatgtggc aacggatgga acaatcccac tggctcctcg acggtaaaaa agatgcgccg
    40921 gtcattgtct acgtcttcgc cgatccgttc tgcccatatt gtaaacagtt ctggcagcag
    40981 gc
//
LOCUS       DAJVSY010000012        40517 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.012, whole genome shotgun sequence.
ACCESSION   DAJVSY010000012 DAJVSY010000000
VERSION     DAJVSY010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 40517)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40517)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40517
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.012"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(115..2436)
                     /locus_tag="OQQ19_000621"
     CDS             complement(115..2436)
                     /locus_tag="OQQ19_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HCS1802361.1"
                     /translation="MMNDSFCRIIAGEIQARPEQVDAAVRLLDEGNTVPFITRYRKEI
                     TGGLDDTQLRNLETRLSYLRELEERRQAILKSISEQGKLTDDLAKAINATLSKTELED
                     LYLPYKPKRRTRGQIAIEAGLEPLADLLWSDPSHTPEVAAAQYVDADKGVADTKAALD
                     GARYILMERFAEDAALLAKVRDYLWKNAHLVSTVVSGKEEEGAKFRDYFDHHEPLSTV
                     PSHRALAMFRGRNEGVLQLSLNADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRK
                     GVVSWTWRIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLMAAPAGLRATMGLDP
                     GLRTGVKVAVVDATGKLVATDTIYPHTGQAAKAAMTVAALCEKHNVELVAIGNGTASR
                     ETERFYLDVQKQFPKVTAQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRL
                     QDPLAELVKIDPKSIGVGQYQHDVSQTQLARKLDAVVEDCVNAVGVDLNTASVPLLTR
                     VAGLTRMMAQNIVAWRDENGQFQNRQQLLKVSRLGPKAFEQCAGFLRINHGDNPLDAS
                     TVHPEAYPVVERILAATQQALKDLMGNSSELRNLKASDFTDEKFGVPTVTDIIKELEK
                     PGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISS
                     LSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPGETNARRGGGNERPQ
                     NNRPAAKPRGREAQPAGNSAMMDALAAAMGKKR"
     gene            complement(2533..3009)
                     /gene="greB"
                     /locus_tag="OQQ19_000622"
     CDS             complement(2533..3009)
                     /gene="greB"
                     /locus_tag="OQQ19_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312275.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HCS1802362.1"
                     /translation="MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSE
                     NADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHR
                     FRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYVKP"
     gene            3237..3956
                     /gene="ompR"
                     /locus_tag="OQQ19_000623"
     CDS             3237..3956
                     /gene="ompR"
                     /locus_tag="OQQ19_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014646135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator OmpR"
                     /protein_id="HCS1802363.1"
                     /translation="MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL
                     TRESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDY
                     IPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMP
                     LTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAH
                     PRYIQTVWGLGYVFVPDGSKA"
     gene            3953..5305
                     /gene="envZ"
                     /locus_tag="OQQ19_000624"
     CDS             3953..5305
                     /gene="envZ"
                     /locus_tag="OQQ19_000624"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     EnvZ"
                     /protein_id="HCS1802364.1"
                     /translation="MRRLRFSPRSSFARTLLLIVTLLFASLVTTYLVVLNFAILPSLQ
                     QFNKVLAYEVRMLMTDKLQLEDGTQLVVPPAFRREIYRELGISLYSNEAAEEAGLRWA
                     QHYEFLSHQMAQQLGGPTEVRVEVNKSSPVVWLKTWLSPNIWVRVPLTEIHQGDFSPL
                     FRYTLAIMLLAIGGAWLFIRIQNRPLVDLEHAALQVGKGIIPPPLREYGASEVRSVTR
                     AFNHMAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEE
                     CNAIIEQFIDYLRTGQEMPMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHP
                     LSIKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVR
                     GDSARTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVTRAQGTTKEG
                     "
     gene            complement(5381..7003)
                     /gene="pckA"
                     /locus_tag="OQQ19_000625"
     CDS             complement(5381..7003)
                     /gene="pckA"
                     /locus_tag="OQQ19_000625"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HCS1802365.1"
                     /translation="MRVNNGLTPQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGY
                     ERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETW
                     QHLKGLVTRQLSGKRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEEL
                     AGFKPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSM
                     MNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDD
                     GVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDGTIDFDDGSKTENTRV
                     SYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHFLSGFTAKLA
                     GTERGITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRI
                     SIKDTRAIIDAILNGSLDNAETFTLPMFNLAIPTELPGVDTKILDPRNTYASPEQWQE
                     KAETLAKLFIDNFDKYTDTPAGAALVAAGPKL"
     gene            7382..9106
                     /locus_tag="OQQ19_000626"
     CDS             7382..9106
                     /locus_tag="OQQ19_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HCS1802366.1"
                     /translation="MDNVELSPATRWGMIATGLLQGLVCYLLIAWLAGKNHSWIVYGV
                     PATVAFSSVLLFSVISFKQKRLWGWLALVFIATTGMSGWLKWQTDGMNPWRAEKAIWD
                     FGCYLLLMAMLLLPWIQQSLRIRNCSSRYSYFYQSVWHNVLILLVIFLANGLTWLVLL
                     LWGELFKLVGIKFFNTLFFATDWFMYLTLGLVTALAVILARTQSRLIDSIQKLFTLIA
                     TGLLPLVSLLTLMFIITLPFTGLSAISRHISAAGLLLTLAFLQLILMAIVRDPQKASL
                     PWTGPLRCLIKTALLVAPLYVFVAAWALWLRVAQYGWTVDRLQGALAVLVLLVWSLGY
                     FVSIVWRNGQNPLVLQGKVNLAVSLLVLVILVLLNSPVLDSMRISVNSHMARYQSGKN
                     TPDQVTIYMLEQSGRYGRAALESLKSDAGFMKDPKRARDLLMALDGEQHLQEQVSEKV
                     LAENVLIAPGSVKPDVTFWSALIQDRYNVMTCIEKDACVLVEQDLNSDGQAERILFAF
                     NDDRVIVYGFDSDRKEWDALDMSLLPNEITKEKLLTAAKDGKLGTRPKAWRDLTVDGE
                     TLEINLSK"
     gene            complement(9241..10119)
                     /gene="hslO"
                     /locus_tag="OQQ19_000627"
     CDS             complement(9241..10119)
                     /gene="hslO"
                     /locus_tag="OQQ19_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417860.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HCS1802367.1"
                     /translation="MPQHDQLHRYLFENFAVRGELVTVSETLQQILENHDYPQPVKNV
                     LAELLVATSLLTATLKFDGDITVQLQGDGPMNLAVINGNNNQQMRGVARVQGEIPENA
                     DLKTLVGNGYVVITITPSEGERYQGVVGLEGDTLAACLEDYFMRSEQLPTRLFIRTGD
                     VDGKPAAGGMLLQVMPAQNAQQDDFDHLATLTETIKTEELLTLPANEVLWRLYHEEEV
                     TVYDPQDVEFKCTCSREHCADALKTLPDEEVDSILAEDGEIDMHCDYCGNHYLFNAMD
                     IAEIRNNASPADPQVH"
     gene            complement(10144..10545)
                     /gene="hslR"
                     /locus_tag="OQQ19_000628"
     CDS             complement(10144..10545)
                     /gene="hslR"
                     /locus_tag="OQQ19_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated heat shock protein Hsp15"
                     /protein_id="HCS1802368.1"
                     /translation="MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK
                     PSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMAMAR
                     KLNALTMPHPDRRPDKKERRDLLRFKHGDSE"
     gene            complement(10556..11224)
                     /gene="yrfG"
                     /locus_tag="OQQ19_000629"
     CDS             complement(10556..11224)
                     /gene="yrfG"
                     /locus_tag="OQQ19_000629"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP/IMP nucleotidase"
                     /protein_id="HCS1802369.1"
                     /translation="MHINIAWQDVDTVLLDMDGTLLDLAFDNYFWQKLVPETWGAKNG
                     VTPQEAMEYMRQQYHDVQHTLNWYCLDYWSEQLGLDICAMTTEMGPRAVLREDTIPFL
                     EALKASGKQRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWHAVAE
                     ATGLKAERTLFIDDSEAILDAAAQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLI
                     PSLM"
     gene            complement(11289..13424)
                     /gene="igaA"
                     /locus_tag="OQQ19_000630"
     CDS             complement(11289..13424)
                     /gene="igaA"
                     /locus_tag="OQQ19_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular growth attenuator protein IgaA"
                     /protein_id="HCS1802370.1"
                     /translation="MSTIVIFLAALLACSLLAGWLIKVRSRRSQLPWTNAFADAQTRK
                     LTPEERSAVENYLESLTQVLQVPGPTGASAAPISLALNAESNNVMMLTHAITRYGIST
                     DDPNKWRYYLDSVEVHLPPFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQETR
                     GYALQPVPSTQASIRGEESEQIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFF
                     CLITPDVFVPWLAGGALLLLGAGLWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQE
                     QINNISLGIIDLVYPAHWQPYIAQDLDQQTDIDIYLDCHVVRQGRYLSLHDEVKNFPL
                     QHWLRSTIIAAGSLLVLFMLLFWIPLDMPLKFTLSWMKGAQTIEATSVKQLADAGVRV
                     GDTLRISGTGMCNIRTSGTWSAKTNSPFLPFDCSQIIWNDARSLPLPESELVNKATAL
                     TEAVNRQLHPKPEDESRVSASLRSAIQKSGMVLLDDFGDIVLKTADLCSAKDDCVRLK
                     NALVNLGNSKDWDALVKRANAGKLDGVNVLLRPVSAESLDNLVATSTAPFITHETARA
                     AQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYDYPPQEQWNAFQKLAQMLMHTPFNA
                     EGIVTKIFTDANGTQHIGLHPIPDRSGLWRYLSTTLLLLTMLGSAIYNGVQAWRRYQR
                     HRTRMMEIQAYYESCLNPQLITPSESLIE"
     gene            13744..14304
                     /gene="nudE"
                     /locus_tag="OQQ19_000631"
     CDS             13744..14304
                     /gene="nudE"
                     /locus_tag="OQQ19_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP compounds hydrolase NudE"
                     /protein_id="HCS1802371.1"
                     /translation="MSKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERMRP
                     TNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGF
                     GANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLE
                     DPDFNEARNVSALFLVREWLKGQGRV"
     gene            complement(14469..17021)
                     /gene="mrcA"
                     /locus_tag="OQQ19_000632"
     CDS             complement(14469..17021)
                     /gene="mrcA"
                     /locus_tag="OQQ19_000632"
                     /EC_number="2.4.1.129"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312265.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase/peptidoglycan
                     DD-transpeptidase MrcA"
                     /protein_id="HCS1802372.1"
                     /translation="MKFVKYFLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRL
                     QIPMQIYSADGELIAQYGEKRRIPVTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIF
                     RAASVALFSGHASQGASTITQQLARNFFLSPERTLMRKIKEVFLAIRIEQLLTKDEIL
                     ELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLNEMAVIAGLPKAPSTFNPLYSMDRA
                     VARRNVVLSRMLDEGYITQQQFDQTRTEAINANYHAPEIAFSAPYLNEMVRQEMYNRY
                     GESAYEDGYRIYTTITRKVQQAAQQAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNN
                     KITDTLKALPTYGPLLPAAVTSANPQGATAMLADGSTVALSMEGVRWARPYRSDTQQG
                     PTPRKVTDVLQTGQQIWVRQVGDAWWLAQVPEVNSALVSINPQNGAVMALVGGFDFNQ
                     SKFNRATQALRQVGSNIKPFLYTAAMDKGLTLASMLNDVPISRWDAGAGSDWQPKNSP
                     PQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSA
                     SFTPMQVARGYAVMANGGFLVDPWFISKIENDQGGVIFEAKPKVACPECDIPVIYGDT
                     QKSNVLENNDVEDVAISREQQNVSVPMPQLEQANQALVAKTGAQEYAPHVINTPLAFL
                     IKSALNTNIFGEPGWQGTGWRAGRDLQRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVW
                     IGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPAWDAYMKAVLEGVPEQPLTPPPG
                     IVTVNIDRSTGQLANGGNSREEYFIEGTQPTQQAVHEVGTTIIDNGEAQELF"
     gene            17141..17920
                     /gene="hofM"
                     /locus_tag="OQQ19_000633"
     CDS             17141..17920
                     /gene="hofM"
                     /locus_tag="OQQ19_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofM"
                     /protein_id="HCS1802373.1"
                     /translation="MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDII
                     KDGRIVDAQQLAKTLLPWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWL
                     SGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPD
                     ASALQRFLPFLPSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALFVDPDS
                     VAICGEGGFDPWEAVSVRQPLLPPPGGDFAIALGLALGKAY"
     gene            17920..18459
                     /gene="hofN"
                     /locus_tag="OQQ19_000634"
     CDS             17920..18459
                     /gene="hofN"
                     /locus_tag="OQQ19_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofN"
                     /protein_id="HCS1802374.1"
                     /translation="MNPPINFLPWRQQRRTAFLCFWLLMFVAPLLLAVGITLILRLTG
                     SAEARIDAVLLQAEQQLARSLQITKPRLLEQQQLRKQRSQRQRQRQFTRDWQSALEAL
                     AALLPEHAWLTTISWQQGTLEIKGLTTSITALNALETSLRQDASFHLNQRGATQQDAQ
                     GRWQFEYQLTRKVSDEHVL"
     gene            18443..18883
                     /gene="hofO"
                     /locus_tag="OQQ19_000635"
     CDS             18443..18883
                     /gene="hofO"
                     /locus_tag="OQQ19_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofO"
                     /protein_id="HCS1802375.1"
                     /translation="MNMFFDWWFATSPRLRQFCWAFWLLMLVTLIFLSSTHHEERDAL
                     IRLRASHHQQWATLYRLVDTTPFSEEKTLPFSPLDFQLPGAQLVSWHPSAQGGELALK
                     TLWEAVPSAFTRLAERNVSVSRFSLSVEGDDLLFTLQLETPHEG"
     gene            18873..19277
                     /gene="hofP"
                     /locus_tag="OQQ19_000636"
     CDS             18873..19277
                     /gene="hofP"
                     /locus_tag="OQQ19_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofP"
                     /protein_id="HCS1802376.1"
                     /translation="MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMV
                     GRGERIIGVIKDGQKKWRRVQQNDVLENGWTILQLTPDVLTLGTGTNCEPPQWLWQRQ
                     GDTNEAMDSRTTVDADTRRTGGKAAKSDADGG"
     gene            19189..20427
                     /gene="hofQ"
                     /locus_tag="OQQ19_000637"
     CDS             19189..20427
                     /gene="hofQ"
                     /locus_tag="OQQ19_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA uptake porin HofQ"
                     /protein_id="HCS1802377.1"
                     /translation="MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQE
                     KLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNNIA
                     RQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDN
                     KTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT
                     LGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIK
                     QGSEIPYQVSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQA
                     DGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDG
                     KEYERRELVVFITPRLVSSE"
     gene            20828..21349
                     /gene="aroK"
                     /locus_tag="OQQ19_000638"
     CDS             20828..21349
                     /gene="aroK"
                     /locus_tag="OQQ19_000638"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004709337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroK"
                     /protein_id="HCS1802378.1"
                     /translation="MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG
                     ADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVY
                     LETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAK
                     VVANQIIHMLESN"
     gene            21406..22494
                     /gene="aroB"
                     /locus_tag="OQQ19_000639"
     CDS             21406..22494
                     /gene="aroB"
                     /locus_tag="OQQ19_000639"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HCS1802379.1"
                     /translation="MERIVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNET
                     LAPLYLDKVRGVLEQAGVNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVAL
                     GGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQP
                     ASVVVDLDCLKTLPPRELASGLAEVIKYGIILDGAFFNWLEENLDALLSLDGPAMAYC
                     IRRCCELKAEVVAADERETGLRALLNLGHTFGHAIEAEMGYGNWLHGEAVAAGMVMAA
                     RTSERLGQFSSAETQRIITLLKRAGLPVNGPREMSAQAYLPHMLRDKKVLAGEIRLIL
                     PLAIGKSEVRSGVSHELVLNAIADCQSA"
     gene            22586..23872
                     /gene="damX"
                     /locus_tag="OQQ19_000640"
     CDS             22586..23872
                     /gene="damX"
                     /locus_tag="OQQ19_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein DamX"
                     /protein_id="HCS1802380.1"
                     /translation="MDEFKPEDELKPDPSDRRTGRSRQSSERSERTERGEPQINFDDI
                     ELDDTDDRRPTRAQKERNEEPEIEEEIDESEDETVDEERVERRPRKRKKAASKPASRQ
                     YMMMGVGILVLLLLIIGIGSALKAPSTSSSDQTASGDKSIDLAGNATDQANGVQPAPG
                     TTSAENTQQDVSLPPISSTPTQGQTPAATDGQQRVEVQGDLNNALTQPQNQQQLNNVA
                     VNSTLPTEPATVAPVRNGNASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEP
                     KPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTA
                     GNVGSLKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGV
                     YASKEEAKKAVSTLPADVQAKNPWAKPLRQVQADLK"
     gene            23979..24815
                     /gene="dam"
                     /locus_tag="OQQ19_000641"
     CDS             23979..24815
                     /gene="dam"
                     /locus_tag="OQQ19_000641"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine-specific DNA-methyltransferase"
                     /protein_id="HCS1802381.1"
                     /translation="MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLN
                     TDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQ
                     DPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFF
                     YCESYADSMARADDASVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVE
                     RHIPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPA
                     KK"
     gene            24833..25510
                     /gene="rpe"
                     /locus_tag="OQQ19_000642"
     CDS             24833..25510
                     /gene="rpe"
                     /locus_tag="OQQ19_000642"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HCS1802382.1"
                     /translation="MKQYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVP
                     NLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRT
                     LQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLRE
                     VRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSE
                     LAKVSHE"
     gene            25503..26261
                     /gene="gph"
                     /locus_tag="OQQ19_000643"
     CDS             25503..26261
                     /gene="gph"
                     /locus_tag="OQQ19_000643"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HCS1802383.1"
                     /translation="MNKFEDIRGVAFDLDGTLVDSAPGLAAAVDMALYALELPVAGEE
                     RVITWIGNGADVLMERALAWARQERATLRKTMGKPPVDDDIPAEEQVRILRKLFDRYY
                     SEVAEEGTFLFPHVADTLGALQAKGLPLGLVTNKPTPFVAPLLEALDIAKYFSVVIGG
                     DDVQNKKPHPDPLLLVAERMGIAPQQMLFVGDSRNDIQAAKAAGCPSVGLTYGYNYGE
                     AIDLSQPDVIYQSINDLLPALGLPHSENQESKND"
     gene            26254..27258
                     /gene="trpS"
                     /locus_tag="OQQ19_000644"
     CDS             26254..27258
                     /gene="trpS"
                     /locus_tag="OQQ19_000644"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HCS1802384.1"
                     /translation="MTKPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQ
                     HAITVRQDAQKLRKATLDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFG
                     ELSRMTQFKDKSARYAENINAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDI
                     AQRFNALYGEIFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVK
                     KIKRAVTDSDEPPVVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGE
                     VADAVSGMLTELQERYHRFRNDEAFLQQVMKDGAEKASVHASRTLKAVYEAIGFVAKP
                     "
     gene            27527..28432
                     /locus_tag="OQQ19_000645"
     CDS             27527..28432
                     /locus_tag="OQQ19_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709156.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802385.1"
                     /translation="MRRTFIKKEGVVITTLARYLLGEKCGNRLKTIDELATECRSSVG
                     LTQAALKTLESSGAIRIERRGRNGSYLVEMDNKALLSHVDINNVVCAMPLPYTRLYEG
                     LASGLKAQFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALE
                     LGPHTYVGEHQLICRKGESGNVKRVGLDSRSADQKIMTDVFFGDSDVERVDLSYHESL
                     QRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLL
                     RAVVDKHALLAHQQRVVSGEQEPSY"
     gene            28449..28811
                     /locus_tag="OQQ19_000646"
     CDS             28449..28811
                     /locus_tag="OQQ19_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417841.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HCS1802386.1"
                     /translation="METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTM
                     AMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEE
                     GYLLANLYGLWMAANEEV"
     gene            28895..30058
                     /locus_tag="OQQ19_000647"
     CDS             28895..30058
                     /locus_tag="OQQ19_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfX family PLP-dependent enzyme"
                     /protein_id="HCS1802387.1"
                     /translation="MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQVLENGKR
                     LIETARLYGIELYLMTKQFGRNPWLAEKLLALGYSGIVAVDYKEARVMRRAGLSVAHQ
                     GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLY
                     PGQESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQAR
                     DQLAKSGIALEQLNAPSATSCTSLPLLAQYGVTHAEPGHALTGTIPANQQGDQSERIA
                     MLWLSEISHHFRGDSYCYGGGYYRRGHAQHALVFTPENQKITETNLKTVDDSSIDYTL
                     SLAGEFPVSSAVVLCFRTQIFVTRSDVVLVSGIHRGEPKIVGRYDSLGNSLGA"
     gene            30058..31284
                     /locus_tag="OQQ19_000648"
     CDS             30058..31284
                     /locus_tag="OQQ19_000648"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HCS1802388.1"
                     /translation="MARFVVLVIDSFGVGAMKDVTLVRPQDAGANTCGHILSQLPHLQ
                     LPTLEKLGLINALGYAPGDMQPSDSATWGVAELQHEGGDTFMGHQEILGTRPLPPLRM
                     PFCDVIDRVEQALVSAGWQVERRGDELQFLWVNQAVAIGDNLEADLGQVYNITANLSV
                     ISFDDAIKIGRIVREQVQVGRVITFGGLLTDSQRILDAAESKEGRFIGINAPRSGAYD
                     NGFQVVHMGYGVDKKVQVPQKLYEAGVPTVLVGKVADIVSNPYGVSWQNLVDSQRIMD
                     ITLDEFNTHPTAFICTNIQETDLAGHAEDVARYAERLQVVDRNLARLVDAMQPDDCLV
                     VMADHGNDPTIGHSHHTREVVPLLVYQQGLAATQLGVRTTLSDVGATVCEFFRAPPPQ
                     NGRSFLSSLRFAGDTL"
     gene            31281..32157
                     /locus_tag="OQQ19_000649"
                     /pseudo
     CDS             31281..32157
                     /locus_tag="OQQ19_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417838.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotriesterase-related protein"
     gene            32168..32521
                     /locus_tag="OQQ19_000650"
     CDS             32168..32521
                     /locus_tag="OQQ19_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417837.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2620 domain-containing protein"
                     /protein_id="HCS1802389.1"
                     /translation="MKKIGVAGLQREQIKKTIEATAPGSFEVFIHNDMEAAMKVKSGQ
                     LDYYIGACNTGAGAALSIAIAVIGYNKSCTIAKPGIKAKDEHIAKMIAEGKVAFGLSV
                     EHVEHAIPMLINHLK"
     gene            32533..33837
                     /locus_tag="OQQ19_000651"
     CDS             32533..33837
                     /locus_tag="OQQ19_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfT family protein"
                     /protein_id="HCS1802390.1"
                     /translation="MDLYIQIIVVACLTGMTSLLAHSSAAVFHDGIRPILPQLIEGYM
                     NRREAGSIAFGLSIGFVASVGISFTLKTGLLNAWLLFLPTDILGVLAINSLMAFGLGA
                     IWGVLILTCLLPVNQLLTALPVDVLGSLGELSSPVVSAFALFPLVAIFYQFGWKQSLV
                     AAVVVLMTRVVVVRYFPHLNPESIEIFIGMVMLLGIAITHDLRHRDENDIDASGLSVF
                     EERTSRIIKNLPYIAIVGALIAAVASMKIFAGSEVSIFTLEKAYSAGVTPEQSQTLIN
                     QAALAEFMRGLGFVPLIATTALATGVYAVAGFTFVYAVGYLSPNPMVAAVLGAVVISA
                     EVLLLRSIGKWLGRYPSVRNASDNIRNAMNMLMEVALLVGSIFAAIKMAGYTGFSIAV
                     AIYFLNESLGRPVQKMAAPVVAVMITGILLNVLYWLGLFVPA"
     gene            33849..34921
                     /locus_tag="OQQ19_000652"
                     /pseudo
     CDS             33849..34921
                     /locus_tag="OQQ19_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417835.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
     gene            complement(35073..35804)
                     /gene="phoB"
                     /locus_tag="OQQ19_000653"
     CDS             complement(35073..35804)
                     /gene="phoB"
                     /locus_tag="OQQ19_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417834.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator PhoB"
                     /protein_id="HCS1802391.1"
                     /translation="MSATDRYSHQLLYATVRQRLLDDIAQGVYQAGQQIPTENELCTQ
                     YNVSRITIRKAISDLVADGVLIRWQGKGTFVQSQKVENALLTVSGFTDFGVSQGKATK
                     EKVIEQERVSAAPFCKKLNIPGNSEVFHLCRVMYLDKEPLFIDSSWIPLSRYPDFDEI
                     YVEGSSTYQLFQERFDTRVVSDKKTIDIFAATRPQAKWLKCELGEPLFRISKIAFDQN
                     DKPVHVSELFCRANRITLTIDNKRH"
     gene            complement(35904..36689)
                     /gene="frlD"
                     /locus_tag="OQQ19_000654"
     CDS             complement(35904..36689)
                     /gene="frlD"
                     /locus_tag="OQQ19_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 6-kinase"
                     /protein_id="HCS1802392.1"
                     /translation="MKTLATIGDNCVDIYPQLNKAFSGGNAVNVAVYCTRYGIQPGCI
                     TWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELHDNDRVFGDYTEGVMADF
                     ALSEEDYAWLAQYDIVHAAIWGHAEDAFPQLHAAGKLTAFDFSDKWDSPLWQTLVPHL
                     DFAFASAPQEDETLRLKMKAIVARGAGTVIVTLGENGSIAWDGAQFWRQAPEPVTVID
                     TMGAGDSFIAGFLCGWSAGMTLPQAMAQGTACAAKTIQYHGAW"
     gene            complement(36686..37516)
                     /gene="frlC"
                     /locus_tag="OQQ19_000655"
     CDS             complement(36686..37516)
                     /gene="frlC"
                     /locus_tag="OQQ19_000655"
                     /EC_number="5.1.3.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 3-epimerase"
                     /protein_id="HCS1802393.1"
                     /translation="MKTGMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDL
                     KAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEM
                     NAGYTLISAAHAGYLTPPNVIWGRLAENLSELYEYAENIGMDLILEPLTPYESNIVCN
                     ANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASDTH
                     YIPGEGKMPLRELMRDIIERGYEGYCTVELVTMYMNEPRLYARQALERFRALLPEDER
                     "
     gene            complement(37566..38588)
                     /gene="frlB"
                     /locus_tag="OQQ19_000656"
     CDS             complement(37566..38588)
                     /gene="frlB"
                     /locus_tag="OQQ19_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417830.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 6-phosphate deglycase"
                     /protein_id="HCS1802394.1"
                     /translation="MLDIDKSTVDFLVTENMVQEVEKVLSHDVPLVHAIVEEMVKRDI
                     DRIYFVACGSPLNAAQAAKHLADRFSDLQVYAISGWEFCDNTPYRLDDRCAVIGVSDY
                     GKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADCIWEIHLLLCYSVV
                     LEMITRLAPNAEIGKIKNDLKQLPNALGHLVRTWEEKGRQLGELASQWPMIYTVAAGP
                     LRPLGYKEGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTER
                     AINFVKQRTDNVIVIDYAEISQGLHPWLAPFLMFVPMEWLCYYLSIYKDHNPDERRYY
                     GGLVEY"
     gene            complement(38609..39997)
                     /gene="frlA"
                     /locus_tag="OQQ19_000657"
     CDS             complement(38609..39997)
                     /gene="frlA"
                     /locus_tag="OQQ19_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417829.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine/psicoselysine transporter"
                     /protein_id="HCS1802395.1"
                     /translation="MTANSPLQRVGQEKGIAMGSQELQRKLGFWAVLAIAVGTTVGSG
                     IFVSVGEVAKAAGTPWLTVLTFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGS
                     RPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDPLPGKFIAAGLIIAFMLLHL
                     RSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGI
                     SATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISDLMPFDKL
                     ANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFF
                     KCFGHVHPKYNTPDVSIILQGAQGLFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWC
                     RKRDDYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAF
                     WAKRSRQLNALS"
     gene            complement(40242..40409)
                     /locus_tag="OQQ19_000658"
     CDS             complement(40242..40409)
                     /locus_tag="OQQ19_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfL family protein"
                     /protein_id="HCS1802396.1"
                     /translation="MNKFIKVALVGAVLATLTACTGHIENRDKNCSYDYLLHPAISIS
                     KIIGGCGPTAQ"
     gene            complement(40435..>40517)
                     /locus_tag="OQQ19_000659"
     CDS             complement(40435..>40517)
                     /locus_tag="OQQ19_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS1 family transposase"
                     /protein_id="HCS1802397.1"
                     /translation="KSLSFSKSVELHDKVIGHYLNIKHYQ"
BASE COUNT         9373 a        10272 c        11132 g         9740 t
ORIGIN      
        1 tgtggaataa aaaggccgga gatattctcc ggcactttta tgtcaggcaa ggcgttcgtt
       61 gccagatgcg gcgtgaacgc cttatcgcgc aggtttaggg gccagtccgg gcgtttaacg
      121 ttttttgccc attgccgccg ccagcgcatc catcatcgcg ctattaccgg caggctgcgc
      181 ttcacgaccg cgtggtttgg ctgccgggcg gttgttttgc gggcgttcat taccgccgcc
      241 gcgacgggcg ttggtttcgc caggctgctc gtccagacgc atagtcaggg cgatacgttt
      301 acgctgaaga tccacttcca gcactttcac cttcacaatg tcgcccgctt tcaccacggt
      361 atgcggatct tccacaaact tgttcgacaa tgaagagatg tgaaccaggc cgtcctgatg
      421 cacgccgata tcgacaaacg cgccaaagtt ggtgacgttg gtcaccgcac cttcgaggat
      481 catacccggt tgcaggtcgt tcattgtctc gacgccatcg gcaaactgag cggttttaaa
      541 ttccggacgc ggatcgcgac ccggtttttc cagctctttg atgatgtcag ttactgtcgg
      601 cacaccgaat ttttcatcag taaagtcaga cgctttcagg ttacgcagtt cgctgctgtt
      661 acccatcaga tctttcagtg cctgctgtgt tgctgccaga atgcgttcca ccaccggata
      721 ggcttccggg tggacggtag aagcatccag cgggttatca ccgtggttaa tgcgcaagaa
      781 gcccgcgcac tgctcgaagg ctttcggccc cagacggctg actttcagca gttgctgacg
      841 gttctggaac tggccgttct catcgcgcca ggccacgatg ttttgcgcca tcatgcgcgt
      901 caggcccgcc acgcgggtta acagcggaac agaagcagtg ttgagatcga cgccaacggc
      961 gtttacgcag tcttctacta ctgcgtccag tttgcgggcc agttgcgtct ggctgacgtc
     1021 atgctgatac tgacctacgc cgatagattt cggatcgatt ttcaccagct ccgccagcgg
     1081 atcctgcaaa cggcgggcga tagacaccgc gccacgcagc gaaacgtcga gatccgggaa
     1141 ctcctgcgct gccagctcgg aagctgagta aaccgacgcg ccagcttcgc tgacgatcac
     1201 tttctgtgcg gtcactttcg ggaactgctt ctgcacgtcg agatagaaac gttcagtttc
     1261 gcgggaagct gtaccgttgc cgatcgccac cagttcaacg ttatgttttt cacacaaggc
     1321 agcaacggtc atcgctgctt ttgcggcttg tccggtgtgc gggtaaatgg tatcggtcgc
     1381 taccagtttg ccagtggcat cgaccaccgc cacttttacc ccagtacgca gacccggatc
     1441 gaggcccatc gttgcacgca gtccggcagg ggccgccatc agcagatcgt gcaggttacg
     1501 ggcaaagacg ttgattgctt catcttccgc gcgttcgcgc acggtaccca tcagttcggt
     1561 ttccagatgc atcagcacct tgatgcgcca ggtccagctc actacgcctt tgcgccagct
     1621 atccgccggg gcattgttca ggcgcaggcc aaggtgatcc atgatgattt gctcgcaata
     1681 gctctctttg ggcggctcat cgaactgcgg atcggcattc agcgaaagct ggagtacgcc
     1741 ttcgttacgc ccacggaaca tcgccagagc gcggtgagaa ggcaccgtgg acaacggttc
     1801 gtgatgatcg aaatagtcgc ggaatttcgc cccttcctct tctttaccgc tcaccaccgt
     1861 agaaaccaaa tgcgcgttct tccacagata atcacgcact ttcgccagca gcgcggcatc
     1921 ttcggcaaac cgttccatca ggatatagcg cgcgccatcc agcgcggctt tggtatctgc
     1981 cacgccttta tcggcatcaa catattgtgc agcggcgact tctggcgtgt gtgacggatc
     2041 gctccacagc aggtcagcca acggctcaag ccctgcttca atggcgattt gcccgcgggt
     2101 gcggcgttta ggtttgtagg gcaggtagag gtcttcgagt tcggttttgc ttagggtggc
     2161 gttgatggcc ttcgccagat catcggtgag tttgccttgc tcggaaatgg acttgaggat
     2221 cgcctgacgt ctctcttcca gctcgcgcag atagctcaga cgcgtttcca gattacgcag
     2281 ctgcgtgtca tccagaccgc cggtgatttc cttacgataa cgtgtgataa acggcacggt
     2341 attcccttcg tcaagcaggc gaacggcagc gtcaacctgt tccgggcgcg cctgaatttc
     2401 acccgcaata atgcggcaga acgaatcatt catcatggtt tgagttcatc ttttcggatc
     2461 aaaaatcagg ggatagttat acggactggc tggcaaaaat gccagccatc ggcaggaggt
     2521 taagactctt ccttacggtt tcacgtactc gatagcatta acataccagc tcgcttcccc
     2581 ggcaggggta ttcaccaccg ccagatcgcc gacttctttt ttcagcaatg cgcgggccat
     2641 cggggaatcg atagagatgt aatctttacg gccaaaaatt tcatcgtagc cgacaatacg
     2701 gaaacggtga gtcacgccat cgtcgttttc aatctccacc cacgcgccaa aaaagacttt
     2761 gccttcctgc tgaggggagt aatcgacgat tttgagattt tccatgcatt tagtgagata
     2821 gcgcacgcga cggtcgattt cacgcagacg ctttttatta tactgatagt cagcattttc
     2881 gctgcggtcg cccagacttg cggcccaggt cacctttttt gtgacctccg ggcgttcttc
     2941 acgccagaga taattaagct cttgtttgag tttttcatac ccttcccggg taaccagggg
     3001 cgttttcatc tcgttgattc cctttgtctg tttgataatg cgcacattgg gtataacgtg
     3061 atcatatcaa cagaatcaat aatgtttcgc cgaataaatt gtatacttaa gctgctgttt
     3121 aatatgcttt gtaacaattt aggctgaaat tcataccaga tttagctggt gacgaacgtg
     3181 agctttttta agaatacacg cttacaaatt gttgcgaacc tttgggagta caaacaatgc
     3241 aagagaacta caagattctg gtggtcgatg acgacatgcg cctgcgtgcg ctgctggaac
     3301 gttatctcac cgaacaaggc ttccaggttc gaagcgtcgc taatgcagaa cagatggatc
     3361 gcctgctgac tcgtgaatct ttccatctta tggtactgga tttaatgtta cctggtgaag
     3421 atggcttgtc gatttgccga cgtcttcgta gtcagagcaa cccgatgccg atcattatgg
     3481 tgacggcgaa aggggaagaa gtggaccgta tcgtaggcct ggagattggc gctgacgact
     3541 acattccaaa accgtttaac ccgcgtgaac tgctggcccg tattcgtgcg gtgctgcgtc
     3601 gtcaggcgaa cgaactgcca ggcgcaccgt cacaggaaga ggcggtaatt gctttcggta
     3661 agttcaaact taacctcggt acgcgcgaaa tgttccgcga agatgagccg atgccgctca
     3721 ccagcggtga gtttgcggta ctgaaggcac tggtcagcca tccgcgtgag ccgctctccc
     3781 gcgataagct gatgaacctt gcccgtggtc gtgaatattc cgcaatggaa cgctccatcg
     3841 acgtgcagat ttcgcgtctg cgccgcatgg tagaagaaga tccagcgcat ccgcgttaca
     3901 ttcagaccgt ttggggcctg ggctacgtct ttgtaccgga cggctctaaa gcatgaggcg
     3961 attgcgcttc tcgccacgaa gttcatttgc ccgtacgtta ttgctcatcg tcaccttgct
     4021 gttcgccagc ctggtgacga cttatctggt ggtgctgaac ttcgcgattt tgccgagcct
     4081 ccagcagttt aataaagtcc tcgcgtacga agtgcgtatg ttgatgaccg acaaactgca
     4141 actggaggac ggcacgcagt tggttgtgcc tcccgctttc cgtcgggaga tctaccgtga
     4201 gctggggatc tctctctact ccaacgaggc tgccgaagag gcaggtctgc gttgggcgca
     4261 acactatgaa ttcttaagcc atcagatggc acagcaactg ggcggcccga cggaagtgcg
     4321 cgttgaggtc aacaaaagtt cgcctgtcgt ctggctgaaa acctggctgt cgcccaatat
     4381 ctgggtacgc gtgccgctga ccgaaattca tcagggcgat ttctctccgc tgttccgcta
     4441 tacgctggcg attatgctat tggcgatagg cggggcgtgg ctgtttattc gtatccagaa
     4501 ccgaccgttg gtcgatctcg aacatgctgc tttgcaggtc ggtaaaggga ttattccacc
     4561 gccgctgcgt gaatatggcg cgtccgaggt acgttcggtt acccgcgcct ttaaccatat
     4621 ggcggctggt gttaagcaac tggcggatga ccgcacgctg ctgatggcgg gggtaagtca
     4681 tgacttacgc acgccgctga cgcgtattcg cctggcgacc gagatgatga gcgaacagga
     4741 tggctacctg gccgaatcga tcaataaaga tatcgaagag tgcaacgcca tcattgagca
     4801 gtttatcgac tacctgcgca ccgggcagga gatgccgatg gaaatggcgg atctcaacgc
     4861 agtactcggt gaggttattg ctgccgaaag tggctatgag cgggaaattg aaaccgcgct
     4921 ttaccccggc agcattgaag tgaaaatgca cccgctgtcg atcaaacgcg cggtggcgaa
     4981 tatggtggtc aacgccgccc gttacggcaa tggctggatc aaagtcagca gcgggacgga
     5041 gccgaatcgc gcctggttcc aggtggaaga tgacggtccg ggaattgcgc cggaacaacg
     5101 taagcacctg ttccagccgt ttgtccgcgg cgacagtgca cgcaccatta gcggcacggg
     5161 attagggctg gcaattgtgc agcgtatcgt ggataaccat aacgggatgc tggagcttgg
     5221 caccagcgag cggggcgggc tttccattcg cgcctggctg ccagtgccgg taacgcgggc
     5281 gcagggcacg acaaaagaag ggtaaataaa cgggaggcga aggtgcctcc cgttttgctt
     5341 tctataagat actggataga tattctccag cttcaaatca ttacagtttc ggaccagccg
     5401 ctaccagcgc ggcacccgca ggggtgtcgg tgtatttatc gaagttgtcg ataaacagtt
     5461 tcgccagggt ttcggctttt tcctgccact gttccggaga agcgtaggtg ttacgcggat
     5521 cgagaatctt cgtgtctacg cccggcagtt cggttgggat cgccaggtta aacatcggca
     5581 gagtgaaggt ttctgcatta tccagcgaac cgttgaggat ggcgtcgata atggcgcggg
     5641 tatctttaat cgagatacgt ttgcctgtgc cgttccagcc agtgttaacc agataagcct
     5701 gcgcgcccgc cgcctgcata cgtttcacca gcacttctgc gtactgagtc gggtgcagcg
     5761 acaggaatgc cgcgccgaag caagcggaga aggttggcgt cggttcggtg atgccacgct
     5821 cagtaccggc cagtttggcg gtgaagccag agaggaagtg atactgggtt tgatcggcag
     5881 tcaggcgaga aaccggcggc aacacgccga aagcatcagc agtcaggaag ataaccttag
     5941 tcgcgtggcc cgctttggaa accggcttaa cgatgttatc gatgtgatag attggataag
     6001 aaacgcgggt gttctcggtt tttgaaccat catcaaagtc gatagtgcca tcttcacgca
     6061 cggtgacgtt ttccagcagc gcatcacgac ggatagcgtt gtagatttca ggttccgctt
     6121 ctttcgacag cttgatagtt tttgcgtagc agccgccttc gaaattaaac acgccgtcat
     6181 cgtcccagcc gtgttcgtca tcgccaatca ggcggcgttt cgggtcggtg gaaagggtgg
     6241 ttttaccggt gccggaaagg ccgaagaaca ccgcaacatc gcctttctcg ccaacgttgg
     6301 cggagcagtg catagaagcg atacctttca gcggcagcag gtagttcatc atcgagaaca
     6361 tccctttctt catttcgccg ccgtaccagg tgccgccaat cagctgcatg cgctcggtca
     6421 ggttaaacgc cacgaagttt tcggagttca gaccctgttc tttccactgc gggttagtgc
     6481 acttcgcgcc gttcataacg ataaagtctg gtttgaaacc tgccagctct tcatcgctcg
     6541 ggcgaataaa catgtttttg acaaaatgcg cctgccaggc cacttcggtg atgaaacgga
     6601 cggaaagacg agtatccggg ttcgcaccac agaaagcgtc gacaacgaac agacgtttgc
     6661 cggaaagctg cctggtcacc aggcctttca gatgctgcca ggtttccgga gagagaggtt
     6721 tgttgtcgtt cttacctttg cctttgtctg cccaccagaa agtatcgcga gtggtatcgt
     6781 cacggacgat atacttatct tttggtgaac gaccggtgaa gatcccggta tcgacggcaa
     6841 cggcacccag attagttaac accccgcgct cataacctgt caggctcgga tcgagctctt
     6901 cctgatacag caggtcgtag cttgggttgt aaacgatatc atgtacgtca ctgataccat
     6961 aagcctcgag ttcttgcggg gtcaaaccat tgttaacgcg catttcactg ctccttagcc
     7021 aatatgtatt gcctgaatag taaagtcttt ttgggggtgt taaccgcgac aaggctcata
     7081 gatttacgta tctggagaaa ttcatatttg acaaaaaacc ccgtgattcc tgttacgaaa
     7141 cggttgctat tatcgcagaa atagcatttt aggtgtggaa aatgttctca aaaggttaaa
     7201 tcttggttta tatggcggga atattgtgag tggaatcgca ttccttaatg aaattgatgc
     7261 aaattcaatc ggtaaagtat cgattcacca cgctaacttt ttttgattat tttctgaaaa
     7321 aagcaaaata ctactgcccg gatgcgataa ttaacccacc ttttgattct ggataaccaa
     7381 catggataac gttgaacttt caccggcaac acgctggggg atgattgcta ccggattact
     7441 tcaggggctg gtttgctacc tgttgatcgc ctggcttgcc ggaaaaaatc acagttggat
     7501 tgtttatggc gtgcctgcga ccgttgcgtt ttcatccgtt ttactcttct ccgtgatctc
     7561 ttttaaacag aagcgccttt ggggatggct ggcgctggtg tttattgcca cgacagggat
     7621 gagcggttgg ctgaagtggc aaactgatgg catgaacccc tggagagctg aaaaggcgat
     7681 ttgggatttt ggctgctatc tgctgttgat ggcaatgttg ttgctaccgt ggatacaaca
     7741 aagccttcgt atccgcaatt gcagtagccg ctatagctac ttttaccagt cagtatggca
     7801 taacgtactt atattactgg tgatttttct cgccaatggc ctgacgtggc tggtgctttt
     7861 actgtggggt gagttgttta aacttgttgg catcaagttt ttcaatacgc tcttttttgc
     7921 aaccgactgg tttatgtatc ttacattagg tctggttacc gcactggcgg tgattctcgc
     7981 gcgcacacag tcacgtttaa tcgactctat tcaaaagttg ttcacgttaa tcgccacggg
     8041 gttgctgccg ttagtatcat tgctaaccct gatgtttatc atcactctgc cgtttacggg
     8101 cctgagcgcg atttctcgcc acatctccgc cgccgggttg ctgttaacgc tggccttttt
     8161 gcaattgatc ttaatggcta ttgtccgcga tccgcaaaaa gcgtcacttc cctggacggg
     8221 gccgttgcgt tgcctgatta aaaccgcttt gctggttgct ccgctgtatg tgttcgtcgc
     8281 cgcctgggcg ttatggctgc gggtcgctca gtacggctgg actgtcgacc gcttgcaggg
     8341 cgcgctggcg gtgctggtgt tactggtgtg gtcgctgggg tattttgtca gtatcgtctg
     8401 gcgtaatggg caaaatcccc ttgttcttca gggcaaagtg aaccttgcgg tttcgttatt
     8461 ggtgttggtg atactggtgc ttcttaattc gccggtgctg gacagtatgc gtattagcgt
     8521 gaacagtcat atggcgcgtt atcagagcgg caaaaacacg ccagaccagg taactatcta
     8581 catgctcgaa cagagcggtc gctatggacg tgcggcgctt gagtcgctga aaagcgatgc
     8641 cgggtttatg aaagacccga aacgcgcgcg ggatctgctg atggcgttag atggagagca
     8701 acatcttcag gaacaggtat cggaaaaagt attagccgaa aatgtgttaa ttgcccctgg
     8761 ttctgttaaa ccggatgtga cattctggtc ggccttaatc caggatcgct ataacgtgat
     8821 gacctgtatt gaaaaagacg cctgcgtcct ggtcgagcaa gatctgaata gtgatggtca
     8881 ggcggagcgg atcctgtttg cttttaatga tgacagagtc attgtctatg gctttgactc
     8941 agacagaaaa gaatgggacg cgcttgatat gagtttactt ccgaacgaaa taacgaaaga
     9001 aaaattactc acagctgcga aggatggaaa actggggacg aggccgaaag cgtggcgcga
     9061 tctgacggta gatggtgaaa cgctggaaat aaacttaagt aagtgacaac gcttttatcg
     9121 gatacgacgc tgtatctgac caaaataatt tgcgatttat ttcataggcg ctggtaagcg
     9181 cagcacatca ggccattaag ttgtaaaatc cggcagagcc ctctctgccg gacatactca
     9241 ttaatgaact tgcggatctg ccggagacgc gttgttgcgg atttcagcaa tatccatcgc
     9301 attgaacaga tagtggttac cgcagtaatc acaatgcatg tcaatttcgc catcttccgc
     9361 caggatgcta tcaacttctt catcaggcag cgttttcagc gcatcggcgc aatgttcacg
     9421 cgagcaggtg catttgaact ccacatcctg cggatcgtaa accgtcacct cttcttcgtg
     9481 atacaaacgc cacaacactt cgtttgccgg taaggtcagc agttcttcgg ttttgatggt
     9541 ttcggttagc gtcgccaggt ggtcaaagtc gtcctgctgg gcattttgcg caggcattac
     9601 ctgcaacaac ataccgcctg cagccggttt gccgtctacg tcgccggtgc gaataaacag
     9661 gcgcgtcggc agctgttcag aacgcataaa gtaatcttcc aggcaggccg ccagggtatc
     9721 accttccaga ccaactacgc cctgatagcg ttcgccttcg ctcggggtaa tggtgatcac
     9781 cacgtaacca ttgccgacca gcgttttcag gtcggcattt tctggaattt cgccctgcac
     9841 gcgcgccaca ccgcgcattt gctggttatt gttaccgtta ataaccgcca gattcatcgg
     9901 accgtcgccc tgcagctgta cggtgatatc accatcaaac ttcagcgtag cggttaacag
     9961 gctggtcgca accagcagtt ctgccagcac gtttttaacg ggctgcggat aatcgtggtt
    10021 ctcaaggatc tgttgcaggg tttccgaaac ggttaccagt tcgccgcgaa cggcaaaatt
    10081 ttcaaacaga tagcgatgta attggtcatg ttgcggcata atcatctctc ttgcaggtga
    10141 cagttattca ctgtcgccgt gtttaaatcg taacaggtcg cggcgctctt ttttgtccgg
    10201 gcgtcggtcc gggtgcggca tggttaaggc attaagttta cgtgccatcg ccattttttc
    10261 gcgtttctct acactttccg cagtctcttc atacagcaag gctgcctcgc tggcggggcg
    10321 acgctgttca gtaatcgcct ttacaatcac cgtgcgttcg tcatttccct ggcgcagagt
    10381 gagcgtggca ttcagctcga cgattttgct cggcttgctg cgctgcccgt tgtaatgcac
    10441 cttaccgcct tcaatcattt cacgggccag cgcgcgggtt ttataaaaac gggcagccca
    10501 tagccattta tccagtcgaa cctcaacagc aggtttctct ttcatggcgt ctccttcaca
    10561 ttagcgaggg gatcaggcgg cggtagtcat tcagtgacgg atggcgttga tactgtttct
    10621 cggcaatccc ggaatcagga ttagtcacgc cgaggcagta acgaatacca aattgcgcgg
    10681 cagcatcgag aatcgcttcg ctgtcatcaa taaacagcgt tctttcagct ttcagacccg
    10741 tagcttcggc caccgcatgc cataaccgct gatcctcttt cggataacca aatgtgtggg
    10801 tggaaagtaa taaatcaagg tgtgcgtcca gacccgtatg ctcaagtttt accgccaggt
    10861 tgtgcggatg agcattggtg agcaaaattc gctgcttacc gctggctttc agtgcctcaa
    10921 gaaacggaat ggtatcttca cgcagtacgg cgcgcggtcc catctcggtg gtcattgcac
    10981 agatatccag acccagttgc tcactccagt aatcaagaca gtaccagttt agcgtatgct
    11041 gtacgtcgtg atattgctgg cgcatatatt ccatcgcttc ctgtggcgta accccgtttt
    11101 tcgcgcccca tgtttcaggc accagctttt gccagaaata gttatcgaag gcgaggtcga
    11161 gcaacgtgcc gtccatatcc agcagaacgg tatctacgtc ctgccaggca atgttgatat
    11221 gcatgaggga aatctccaga gtgaagcaat ttgcgcgaca gggtagcata acctgtcgcg
    11281 caaacgtgtt attcgataag gctttctgaa ggggtgatca gttgcgggtt caggcagctt
    11341 tcataatagg cctgaatctc catcatgcga gtgcgatgac gctggtaacg acgccaggcc
    11401 tgtacgccat tgtaaatggc gctacccagc atcgtcagta gcagcaatgt ggtgctgaga
    11461 tagcgccaca ggccggaacg atccgggatc ggatgaaggc caatatgctg cgtaccattg
    11521 gcgtcagtga agatttttgt gacgatacct tcggcgttaa acggcgtatg catcagcatt
    11581 tgtgccagtt tctggaaagc gttccactgt tcttgcggcg ggtagtcgta aagtgatgcc
    11641 gaaggccagg gctgatcaac aaaatcgctg ccttcgtcgc tgacaatcag gaatccgccg
    11701 ggggccggac tgtttagtga ttgtgccgct cgcgccgttt catgcgtgat aaacggcgcg
    11761 gtggaggttg ccaccaggtt atccagcgat tccgcactca ccgggcgtaa taacacattc
    11821 acgccatcga gcttcccggc gttggcgcgt tttaccagcg cgtcccagtc tttactgttg
    11881 ccgagattga ccagcgcatt tttcagtcgc acacagtcat ctttggcaga acataaatcc
    11941 gctgtcttca gtacaatgtc gccaaaatca tcaagcaata ccatgccgga tttttgaatc
    12001 gctgaacgta atgaggcact gacgcgagat tcatcttccg gtttagggtg cagctggcga
    12061 ttaactgctt cagtcaatgc cgtcgctttg ttgaccagtt cagattctgg taatggtaat
    12121 gagcgggcgt cattccagat gatctgcgag cagtcaaacg gtaaaaaagg tgaattggtt
    12181 ttcgcgctcc aggttccgga agtgcgaata ttacacattc ccgtaccgct aatacgcaat
    12241 gtatcgccta cccgcacgcc agcgtcagcc agttgtttta cgctggtggc ttcaatggtc
    12301 tgcgcgcctt tcatccatga gagagtgaat ttcagcggca tatccagcgg gatccagaat
    12361 aacagcataa acagcaccag cagcgagccc gcagcgataa tcgtactgcg cagccagtgc
    12421 tgtaacggaa agttttttac ttcatcatgc agcgaaagat atcgcccctg acgcactacg
    12481 tggcagtcga gatagatatc aatatcggtt tgttgatcga gatcctgagc aatgtatggc
    12541 tgccagtgtg cgggatagac caggtcgata ataccgagtg aaatattgtt gatctgttcc
    12601 tgatcgtttt cgccaaacaa tccccaacga cggggtgtac cgcgcagaca atgaatttcc
    12661 cgcagggagg attttgccgg gggcgcgaat agcccccaca gacctgcgcc cagcagcagt
    12721 aatgcgccgc ctgccagcca cggaacaaat acatccgggg taatcaggca gaaaaagaac
    12781 atcaggaagg aggcgacgat cagcaacgct tcacgcagcc cgcgcggacg actcagcgca
    12841 tattcttcat gcgtttcttt gcgaatattg agtagctcga tttgctcact ctcttccccg
    12901 cgaatcgacg cctgcgtgga cggaacaggt tgcaaggcat agccgcgcgt ttcctgcatg
    12961 tactcctgta gcgtatgacc gttgagtgaa ataaccaacg gcagcgaatc ggtatgaatc
    13021 agttcaacgg tattctcatc gttgatgtac tgttcccaga aggggggcag gtggacttct
    13081 accgaatcga ggtagtaacg ccatttattc ggatcgtcgg tagagatgcc gtaacgtgtg
    13141 atagcgtgtg tcagcatcat gacgttgttg ctttcggcat tcagcgccag agagatcggt
    13201 gccgcgctag ctcccgttgg gccaggcacc tgtaatacct gcgtcaggct ctcaagataa
    13261 ttttcaacgg cgctacgttc ttcaggtgtg agtttacgcg tttgcgcatc cgcgaaggcg
    13321 ttggtccagg gcagctgact ccgtctggat cgcactttta tcagccatcc cgcaagtagt
    13381 gagcaggcca gcaaagcagc taaaaaaatc acaatggtgc tcatgctttc cccatcttac
    13441 ttagtctgtc aggcgtggtc agtcgcacca gacacaatac atgattctgc ggttggctat
    13501 cggcaagcgt ggagtttaac ttgagcatca ttaagcacat cacagtaacc gctgatcata
    13561 gcaaaccctc tgaaggcgga atatcagcaa attcctagag ttatttcaac ctattgactt
    13621 ttaatttgat ttgaggacga ttatttatta agttacataa atgtaaataa catgcaattc
    13681 acattgccga aagcgtgtcc gatatcgcac aataaccgct gatttcacag catagatccc
    13741 acgatgagca aatcattaca aaaacccacc attctgaatg ttgaaactgt agcccgttcc
    13801 cgactgttta ccgtcgagag cgtggatctg gagttcagca atggcgtgcg gcgtgtttat
    13861 gaacgaatgc gtccaaccaa ccgggaagca gtgatgattg tgccgattgt ggacgatcac
    13921 ctgatcctga tccgcgaata cgcagtggga actgaatcct acgaattagg tttttcgaaa
    13981 ggattaattg atccgggtga aagcgtctac gaagccgcta accgcgagct aaaagaagag
    14041 gttggatttg gtgcgaacga tctgactttt ttgaagaagc tcagcatggc accgtcttac
    14101 ttttccagca aaatgaatat cgtggtcgcg caagatctct acccggaatc gctggaaggc
    14161 gatgagccag agccgctacc acaggtgcgc tggccgctgg cgcatatgat ggatttgctg
    14221 gaagaccctg acttcaacga agcgcgtaat gtcagcgcgc tgttcctcgt gcgcgaatgg
    14281 ttgaaagggc aggggcgagt gtaaatgcgt gaagtttgcc tgatgcacaa cgcttatcag
    14341 gcttatgggg ttcctgcaat atattgattt ttcacgattt tgttagccgg gtaacgcggt
    14401 cacccgcatc cagcataaac aaatgcactt tgtcagccaa ctgaaaaggc gccgaagcgc
    14461 ctttttaatc agaacaattc ctgtgcctca ccattatcga taatggtcgt tcccacctcg
    14521 tgcaccgcct gttgtgtcgg ctgcgtacct tcgatgaaat actcttcgcg gctgttgcca
    14581 ccattagcta actgcccggt gctgcgatcg atattcaccg tcacaatacc cggtggcggc
    14641 gtcagcggct gctccggcac accttcaaga acggctttca tataagcgtc ccatgcaggc
    14701 tgggcactct tggctccgcc ttcgtaacct gagatctgat ctttaatcgc tccggaagcc
    14761 gttgtatgac cgagattacg acggtgatca tcaaagccaa tccagaccga ggtcacaacg
    14821 cccggaccgt aacccgagaa ccacgcatct ttcgaactgt tagtggtacc ggttttcccg
    14881 ccgatatcgc gacgctgcaa atcacgacct gcacgccagc cagtaccctg ccagcctggc
    14941 tcaccaaaga tattggtgtt caaagcactc ttaatcagga atgccagcgg agtgttgatg
    15001 acgtgcggtg cgtactcctg cgcgccagtc ttcgccacta acgcctgatt tgcctgctcc
    15061 agctgcggca ttggtacaga aacattctgc tgctcgcggg agatagcgac atcttcaaca
    15121 tcgttatttt ccagcacgtt cgatttctgc gtatcaccgt aaatcaccgg aatatcgcat
    15181 tccgggcagg ctactttcgg tttcgcttcg aaaatcacgc cgccctgatc gttttcaatt
    15241 ttgctgataa accacgggtc caccaggaag ccgccgttcg ccatgaccgc gtagccgcgc
    15301 gccacctgca ttggggtgaa ggacgctgaa cccagcgcca gcgattcggt gtggacaatg
    15361 ttttgcgccg ggaagccgaa gcgttgcaga tattctgcag cgtagtcgac gcccatagcc
    15421 cgcattgcac gtaccatcac cacgtttttc gactgaccca gcccctgacg taagcgaatt
    15481 ggaccagcat attgtggcgg cgagtttttc ggctgccagt cagaaccggc acctgcgtcc
    15541 cagcgagaaa ttggcacatc gttcaacata cttgccagcg tcagaccttt atccatcgcc
    15601 gcggtgtaga ggaacggttt gatgttggaa cccacctgac gcagtgcctg ggtggcgcgg
    15661 ttaaacttgc tctgattgaa atcaaagcca ccgaccagcg ccataacggc accgttttgc
    15721 ggattgatcg acaccagcgc cgagttcact tccggcactt gtgccagcca ccatgcatcg
    15781 ccaacctgac gaacccagat ttgctgaccc gtttgcagaa catcggtcac tttacgcggc
    15841 gtcggtccct gctgagtatc cgaacggtaa ggacgcgccc agcgaacgcc ttccatactc
    15901 aatgcgacgg tcgacccgtc cgccagcatc gccgtcgctc cctgaggatt ggcgctggtg
    15961 actgcggcag gcagcagcgg accataggtc ggcagcgcct tcagcgtatc ggtaatcttg
    16021 ttgttatccc acgccgactc gcccactttc cacagcacat ttgccgggcc gcgatagccg
    16081 tggcgcatgt cgtagtccag cacgttatta cgtaccgcct gctgtgcggc ctgctgcact
    16141 ttgcgggtga tggtggtgta aatgcgataa ccgtcttcat aggcactttc gccataacgg
    16201 ttatacatct cctggcgcac catttcgttc aggtacggcg cagagaaagc aatctccggc
    16261 gcgtgatagt tagcgttaat cgcctcagtg cgtgtctgat cgaactgttg ttgggtgata
    16321 tacccttcat ccagcatccg cgacagtacg acgttacgcc gcgcgacggc acgatccatt
    16381 gagtagagcg gattaaaggt ggaaggcgct ttcggcagcc cggctatcac agccatttcg
    16441 ttcagcgtca gttggtcgac cgttttaccg aaatagactt gtgccgcagc accgacacca
    16501 taggcgcggt aaccgaggta aatcttattc agataaagct cgaggatctc gtctttcgtc
    16561 agcaactgtt caatgcgaat cgcgaggaag acttccttaa tcttacgcat cagcgtgcgt
    16621 tctggactga ggaagaagtt tctcgccagc tgctgggtaa tggtactcgc cccttgtgac
    16681 gcgtggccgg agaacagcgc cacacttgcc gcacggaaga tccccaccgg gtcaacgccg
    16741 tgatgctcgt agaagcggct gtcttccgtc gcgataaagg ctttcaccat ctccggcggg
    16801 atttgatcca acgtaaccgg aatacgacgt ttctcaccgt attgagcaat cagctcgcca
    16861 tcggcgctgt aaatctgcat cggaatttgc aggcgaacat cttttaatgt cgccacatcc
    16921 ggcagttgtg gctcgatgta gcggtatagg ccataaatcg agcctgctcc cagcagaatg
    16981 caacagactg caaggatcaa aaaatacttt acgaacttca ctggaaattt cccatttagt
    17041 ttcatttggg cagtttataa acaaacgcgc ggtagtataa aggcaagcca gacgcattga
    17101 tatacccgtc agagtgacgg gtgataagga gatcatcaca atggcattta agatctggca
    17161 aattggtttg catttacaac agcaagaagc ggtagcggtt gcgatcgtgc ggggcgcaaa
    17221 agaatgcttt ttgcaacgct ggtggcggtt gccgctggag aacgacatta tcaaagatgg
    17281 gcggattgtt gatgcgcagc agctggctaa aacgttgtta ccttggagtc gcgaactgcc
    17341 gcagcgtcat cacattatgt tggcgtttcc cgccagtcgc acattacagc ggtcatttcc
    17401 gcgcccgtcg atgtcccttg gtgagcggga gcaaacggcc tggctgtcag ggacgatggc
    17461 ccgcgagctg gatatggatc cggactccct gcgcttcgat tacagcgaag actcactcag
    17521 tcccgcctat aacgtgactg ccgcgcaaag caaagagctg gcaacgctgc ttactctggc
    17581 agaaaggttg cgtgttcatg ttagtgcgat caccccggat gccagtgcat tacagcgatt
    17641 cctgcctttt ttaccttctc atcagcaatg tctggcctgg cgtgataacg aacagtggct
    17701 gtgggcgacg cgctatagct gggggcgcaa actggcggtg gggatgacta gcgcgaagga
    17761 gctggcggca gcgttattcg ttgatcccga cagcgtcgcg atatgtggcg aaggcggatt
    17821 tgacccctgg gaggccgttt ctgttcgtca gccgctgcta ccgccgcctg gtggagactt
    17881 tgccatcgcg ctggggctgg cgcttgggaa ggcgtactga tgaacccgcc aattaatttt
    17941 ttgccctggc gacagcaacg ccggaccgct tttctgtgtt tctggttgct gatgttcgtt
    18001 gcgcctctgc tgctggccgt cgggataacg ctaatactgc gtctgacagg cagcgccgaa
    18061 gcgcgcatag acgcagtttt gcttcaggcg gaacaacaac tcgcccgcag cttacagata
    18121 acgaagccac gtttgctgga gcaacagcag ttacgcaaac agcgttcgca acggcagcgc
    18181 cagcgacaat ttacccgcga ctggcaatct gcgctggaag cactggcggc gcttttaccc
    18241 gagcacgcct ggctgacaac gataagctgg cagcagggaa cgctggagat caaggggctg
    18301 acaacaagca ttaccgcgtt aaacgcacta gaaacgtcac tccgccagga tgcgtctttt
    18361 catctcaatc agcggggagc cacgcagcag gatgcgcagg gacgctggca atttgagtat
    18421 cagttaacaa ggaaggttag cgatgaacat gttctttgac tggtggttcg ccacatcacc
    18481 ccgcctccgc cagttttgct gggcattctg gttgctgatg ttagttacgc tcatttttct
    18541 gtcatcgaca caccatgaag agcgcgacgc attaattcga ttacgggcaa gtcatcacca
    18601 gcagtgggcc acactgtatc gcctggttga caccactccc ttcagcgaag aaaaaacgct
    18661 gcccttttcg ccactggatt ttcagttgcc cggcgcgcaa ctggtttcct ggcatccatc
    18721 cgcgcaggga ggtgagttgg cgttgaaaac gctgtgggaa gcagtgccgt cggcattcac
    18781 acggctggca gagcgcaacg tcagcgtgag ccgtttttcg ttaagcgtgg aaggtgatga
    18841 tcttttgttc acgctacaac tggagacgcc gcatgagggt taaacgctgg ttgttggcag
    18901 gtattgcatt gtgcctttta accggtatgc gtgacccttt taaaccgccg gaagatctat
    18961 gccggattag cgaacttagc cagtggcgct atcaggggat ggtagggcga ggcgagcgca
    19021 tcatcggtgt aataaaagac gggcaaaaga aatggcgacg ggtgcagcaa aacgatgtgc
    19081 tggaaaacgg ctggacaatt ttacagctga cgccagacgt actaacgctg ggtaccggga
    19141 caaactgcga accgccacaa tggttgtggc aacggcaagg agatacaaat gaagcaatgg
    19201 atagccgcac tactgttgat gctgataccc ggcgtacagg cggcaaagcc gcaaaaagtg
    19261 acgctgatgg tggatgacgt tccggtagct caggtgttgc aggcgctggc tgaacaggag
    19321 aagttgaacc tggtcgtgtc gccagacgtc agcggtacgg tgtcgttaca tctaacagat
    19381 gttccctgga agcaggcact acaaactgta gtgaaaagcg ctggactgat aacgcggcag
    19441 gaaggcaaca ttctctcagt gcattccatt gcctggcaga ataacaatat cgcccgccag
    19501 gaggcggagc aggcgcgggc gcaggcaaat ctgccgctgg aaaatcgcag tataaccctg
    19561 caatacgccg acgcgggaga actggcgaaa gcgggggaga agctactgag tgccaaaggg
    19621 agtatgaccg tcgataaacg caccaatcgc cttttgctac gagataacaa aacggcgtta
    19681 agcgcgcttg aacagtgggt agcgcaaatg gatctgccgg tcgggcaggt tgagctgtcg
    19741 gcgcatattg tcaccattaa tgaaaaaagt ttgcgtgagt taggcgtgaa atggacgctg
    19801 gccgatgcgc aacacgctgg tggcgttggg caagtcacca cgcttggtag cgacctctcc
    19861 gtagcgacgg cgacaacgca tgtcggtttt aacattgggc gcatcaacgg acgcttgctg
    19921 gatcttgagc tttccgcgct cgaacaaaaa cagcagctgg atattatcgc cagtccgcgt
    19981 ctgctggcct cacatcttca gcctgccagc attaaacagg ggagcgaaat tccatatcag
    20041 gtttccagcg gggaaagtgg cgcgacgtcg gtggaattta aagaggccgt cctggggata
    20101 gaggtcacgc ccacggtgtt acaaaaaggt cgcatccggc tgaaattaca catcagccag
    20161 aacgttccgg ggcaggtgct acagcaggcc gatggcgaag tgctggcgat tgataagcag
    20221 gagatcgaaa cgcaggtcga ggtcaaaagc ggagaaacgt tggcgctggg cggcattttt
    20281 acccgtaaaa ataaatcggg tcaggatagc gtaccgttgc ttggcgacat tccctggttc
    20341 gggcaattat ttcgtcatga cggaaaagaa tatgaacgac gcgagttagt ggtgtttatc
    20401 acgccacgac tggtttccag tgagtaaaca gccgtaaaag cggtaatgtt tttatgctga
    20461 acgtgtttca tctatttgac gcgcgcaggt atttagcata caaggagtac cgatttgaga
    20521 gttggcgctc ttcgctgcct gcgttccatg atgatgattt atcattcagg cggcattttg
    20581 ctgtcttttt tacgctaatc ttacccggtg atttatcgcc agagcggtgg tagcaaggca
    20641 gcgcgcttgc agcgaccaga tatgcagagg gatgggtgat ttattcagtt gccaaacccg
    20701 ctggagtatt gagataattt tcagtctgac tctcgcaata tcttatgagg tttcagttca
    20761 tgtcctgcgg cgctctctga gcgaagcggg tttatcatta acgaatagtc ttagtagtac
    20821 cgaaaaaatg gcagagaaac gcaatatctt tctggttggg cctatgggtg ccggaaaaag
    20881 cactattggg cgccagttag ctcaacaact caatatggaa ttttacgatt ccgatcaaga
    20941 gattgagaaa cgaaccggag ctgatgtggg ctgggttttc gatttagaag gcgaagaagg
    21001 cttccgcgat cgcgaagaaa aggtcatcaa tgagttgacc gagaaacagg gtattgtgct
    21061 ggctactggc ggcggctctg tgaaatcccg tgaaacgcgt aaccgtcttt ccgctcgtgg
    21121 cgttgtcgtt tatcttgaaa cgaccatcga aaagcaactt gcacgcacgc agcgtgataa
    21181 aaaacgcccg ttgctgcacg ttgaaacacc gccgcgtgaa gttctggaag cgttggccaa
    21241 tgaacgcaat ccgctgtatg aagagattgc cgacgtgacc attcgtactg atgatcaaag
    21301 cgctaaagtg gttgcaaacc agattattca catgctggaa agcaactaat tctggcttta
    21361 tatacactcg tctgcgggta cagtaattaa ggtggatgtc gcgttatgga gaggattgtc
    21421 gttactctcg gggaacgtag ttacccaatt accatcgcat ctggtttgtt taatgaacca
    21481 gcttcattct taccgctgaa atcgggcgag caggtcatgt tggtcaccaa cgaaaccctg
    21541 gctcctctgt atctcgataa ggtccgcggc gtacttgaac aggcgggtgt taacgtcgat
    21601 agcgttatcc tccctgacgg cgagcagtat aaaagcctgg ctgtactcga taccgtcttt
    21661 acggcgttgt tacaaaagcc gcatggtcgc gatactacgc tggtggcgct tggcggcggc
    21721 gtagtgggcg atctgaccgg cttcgcggcg gcgagttatc agcgcggtgt tcgtttcatt
    21781 caagtcccga cgacgttact gtcgcaggtc gattcctccg ttggcggcaa aactgcggtc
    21841 aaccatcccc tcggtaaaaa catgattggc gcgttctacc agcctgcttc agtggtggtg
    21901 gatctcgact gtctgaaaac gcttcccccg cgtgagttag cgtcggggct ggcagaagtc
    21961 atcaaatacg gcattattct tgacggtgcg ttttttaact ggctggaaga gaatctggat
    22021 gcgttgttga gtctggacgg tccggcaatg gcgtactgta ttcgccgttg ttgtgaactg
    22081 aaggcagaag ttgtcgccgc cgacgagcgc gaaaccgggt tacgtgcttt actgaatctg
    22141 ggacacacct ttggtcatgc cattgaagct gaaatggggt atggcaattg gttacatggt
    22201 gaagcggtcg ctgcgggtat ggtgatggcg gcgcggacgt cggaacgtct cgggcagttt
    22261 agttctgccg aaacgcagcg tattataacc ctgctcaagc gggctgggtt accggtcaat
    22321 gggccgcgcg aaatgtccgc gcaggcgtat ttaccgcata tgctgcgtga caagaaagtc
    22381 cttgcgggag agatacgctt aattcttccg ttggcaattg gtaagagtga agttcgcagc
    22441 ggcgtttcgc acgagcttgt tcttaacgcc attgccgatt gtcaatcagc gtaacaacaa
    22501 gaaaggtcag gccgcttatc aagcggtcta ttagcttcag gttaattgca acgtggtaag
    22561 cattaacctt ttagtggggt gttaaatgga tgaattcaaa ccagaagacg agctgaaacc
    22621 cgatcccagc gatcgtcgta ctggtcgttc tcgtcaatct tctgaacgtt ctgagcgtac
    22681 tgaacgtggc gaaccgcaga tcaattttga tgatattgaa cttgatgaca ctgacgatcg
    22741 ccgtccgact cgtgcgcaaa aagagcgcaa tgaggaaccg gaaatcgaag aagaaattga
    22801 cgaatccgaa gatgaaaccg tggatgaaga gcgcgtagag cgtcgtccgc gtaagcgcaa
    22861 aaaagcagcc agtaaacccg cttctcgtca gtatatgatg atgggcgtcg gcattctggt
    22921 tctactgctg ttgatcatcg gtatcggttc tgcgctaaaa gccccctcga cctcttccag
    22981 cgatcaaacc gcgtctggcg ataagagtat tgatcttgca ggcaatgcga ccgatcaggc
    23041 gaatggggtg cagccagcgc cgggaaccac gtctgcggaa aatactcagc aggatgtttc
    23101 tctgccaccg atctcttcta cgccgactca agggcaaacc ccggcggcaa cggatggtca
    23161 acaacgtgtt gaagtgcagg gtgacctgaa caatgcgctg actcagccac aaaatcagca
    23221 acagttgaac aatgtggcgg tcaattccac attgccgacc gaacccgcga ctgtcgcgcc
    23281 tgttcgcaat ggcaatgcat cgcgtgacac ggcgaaaacg caaaccgctg aacgtccgtc
    23341 cactacgcgc ccagctcgtc agcaggcggt gattgaaccg aaaaaaccgc aagcaaccgt
    23401 gaaaacggag ccgaagccgg tagcacagac gccgaagcgt actgaaccag ctgcccctgt
    23461 ggcgagcacg aaggcaccgg ctgcgacttc tacgccagca ccaaaagaga cggcgactac
    23521 ggctccagta cagacggcat ccccggcgca aaccacggca acaccagccg ctggagggaa
    23581 gaccgcaggt aatgttggtt cgttgaaatc ggcaccgtcc agccattaca ctctgcagct
    23641 gagcagttcc tctaactacg acaacctgaa cggttgggcg aagaaagaga atctgaaaaa
    23701 ctacgttgtc tatgaaacga cgcgtaatgg tcagccgtgg tatgtcctgg tttctggcgt
    23761 gtacgcttcg aaagaagagg cgaaaaaagc ggtatctaca ttgccagcag atgttcaggc
    23821 caaaaacccg tgggcgaaac cgctgcgtca ggtacaggcc gatctgaagt aatcaaggtt
    23881 atctcccgca atggtttatc gttgcgggag ctgcctgaag cgctggatgc tgtcggagct
    23941 ttctccacag ccggagaagg tgtaattagt tagtcagcat gaagaaaaat cgcgcttttt
    24001 tgaagtgggc agggggcaag tatcccctgc ttgatgatat taaacggcat ttgcccaagg
    24061 gcgaatgtct ggttgagcct tttgtaggtg ccgggtcggt gtttctcaac accgactttt
    24121 ctcgttatat ccttgccgat atcaatagcg acctgatcag tctctataac attgtgaaga
    24181 tgcgtactga tgagtacgta caggccgcac gcgagctgtt tgttcccgaa acaaattgcg
    24241 ccgaggttta ctatcagttc cgcgaagagt tcaacaaaag ccaggatccg ttccgtcggg
    24301 cggtactgtt tttatatttg aaccgctacg gttacaacgg cctgtgtcgt tacaatctgc
    24361 gcggtgagtt taacgtgccg tttggccgct acaaaaaacc ctatttcccg gaagcagagt
    24421 tgtatcactt cgctgaaaaa gcgcagaatg cctttttcta ttgtgagtct tacgccgata
    24481 gcatggcgcg cgcagatgat gcatccgtcg tctattgcga tccgccttat gcaccgctgt
    24541 ctgcgaccgc caactttacg gcgtatcaca caaacagttt tacgcttgaa caacaagcgc
    24601 atctggcgga gatcgccgaa ggtctggttg agcgccatat tccagtgctg atctccaatc
    24661 acgatacgat gttaacgcgt gagtggtatc agcgcgcaaa attgcatgtc gtcaaagttc
    24721 gacgcagtat aagcagcaac ggcggcacac gtaaaaaggt ggacgaactg ctggctttgt
    24781 acaaaccagg agtcgtttca cccgcgaaaa aataattctc aaggagaagc ggatgaaaca
    24841 gtatttgatt gccccctcaa ttctgtcggc tgattttgcc cgcctgggtg aagataccgc
    24901 aaaagccctg gcagctggcg ctgatgtcgt gcattttgac gtcatggata accactatgt
    24961 tcccaatctg acgattgggc caatggtgct gaaatccttg cgtaactatg gcattaccgc
    25021 ccctatcgat gtacatctga tggtgaaacc cgtcgatcgc attgtgcctg atttcgctgc
    25081 cgctggtgcc agcatcatta cctttcatcc agaagcctcc gagcatgttg accgcacgct
    25141 gcaactgatt aaagaaaatg gctgtaaagc gggtctggta tttaacccgg cgacacctct
    25201 gagctatctg gattacgtga tggataagct ggatgtgatc ctgctgatgt ctgttaaccc
    25261 aggttttggc ggtcagtcgt tcattccaca aacactggat aaactgcgcg aagtacgtcg
    25321 tcgtatcgac gagtctggtt ttgacattcg actggaagtg gacggtggcg tgaaggtgaa
    25381 caacattggc gaaatcgctg cggcgggcgc ggatatgttc gtcgccggtt cggcaatctt
    25441 cgaccagcca gactacaaaa aagtcattga tgaaatgcgc agtgaactgg caaaggtaag
    25501 tcatgaataa gtttgaagat attcgcggcg tcgcttttga tctcgacggt acgctggttg
    25561 acagtgctcc cggtcttgct gctgcggtag atatggcgct gtatgcgctg gagttacccg
    25621 tcgcaggtga agaacgcgtt attacctgga ttggtaacgg cgcagatgtt ctgatggagc
    25681 gtgcattggc ctgggcgcgt caggaacgtg cgactctgcg taaaacaatg ggtaaaccgc
    25741 ccgttgatga cgacattccg gcagaagaac aggtacgtat tctgcgtaaa ctgttcgatc
    25801 gctactatag cgaggttgcc gaagagggga cgtttttgtt cccgcacgtt gccgatacgt
    25861 tgggcgcgtt gcaggctaaa ggcctgccgc taggcctggt caccaacaaa ccgacgccgt
    25921 tcgtcgcgcc actgctcgaa gccttagata ttgccaaata ctttagcgtg gttatcggcg
    25981 gcgatgatgt gcaaaacaaa aaaccgcatc cggacccgct gttactggtg gctgagcgga
    26041 tgggaattgc cccacaacag atgctgtttg tcggcgactc acgcaatgat attcaggcgg
    26101 caaaagcggc aggttgccca tcagttggct taacctacgg atataactac ggcgaggcta
    26161 tcgatctcag ccagcctgat gtaatttatc agtctataaa tgaccttctg cccgcattag
    26221 ggcttccgca tagcgaaaat caggaatcga aaaatgacta agcccatcgt ttttagtggc
    26281 gcacagccct caggtgaatt gaccattggt aactacatgg gtgcgctgcg tcagtgggta
    26341 aacatgcagg atgactacca ttgcatttac tgtatcgttg accaacacgc gatcaccgtg
    26401 cgccaggatg cacagaagct gcgtaaagcg acgctggata cgctggcctt gtatctggct
    26461 tgtggtatcg atcctgagaa aagcaccatt tttgttcagt cccacgtacc agaacatgcg
    26521 cagttaggct gggcactgaa ctgctatacc tacttcggcg aactgagccg catgacccag
    26581 tttaaagata aatctgcgcg ttatgccgag aacatcaacg ctggtctgtt tgactatccg
    26641 gtgctgatgg ctgcggacat cctgctgtat caaactaatc tggtaccggt gggtgaagac
    26701 cagaaacagc acctggaact gagtcgcgat atcgcccagc gtttcaacgc gctgtatggc
    26761 gagatcttta aggtgccgga gccgtttatt ccgaaatctg gcgcgcgcgt aatgtcgctg
    26821 ctggagccga ccaagaagat gtccaagtct gacgataacc gcaataacgt tatcggcctg
    26881 ctggaagatc cgaaatcggt agtgaagaaa atcaaacgcg cggtcactga ctccgacgag
    26941 ccgccggtag ttcgctacga tgtgcagaac aaagcgggcg tttccaacct gctggatatc
    27001 ctttctgcgg taacgggcca gagcatccca gaactggaaa aacagttcga aggcaagatg
    27061 tatggccatc tgaaaggtga agtggctgat gccgtttccg gtatgctgac tgaattgcag
    27121 gaacgctatc accgtttccg caacgatgaa gccttcctgc aacaggtgat gaaagacggc
    27181 gcagaaaaag ccagtgtaca cgcttcccgt acgctgaaag cggtgtacga agcgattggt
    27241 tttgtggcga agccgtaata tcaaaacgct cggacggtcc cctcgcccct ttggggagag
    27301 ggttagggtg aggggagcag gcaagcgcca gtgggaatta ccctttgctc gcattgtcga
    27361 ataaatcact tcgtcatcac tctgaaaccg gggaaacccg gtttttttat cctcatttgc
    27421 aataatccga aaaaatgtga agcgcctcgc cgtttccaca tctcacagtt gccacttatc
    27481 ttcattttaa tgaagatata aacattcatt ttattgaaaa tatattatgc gtcgaacgtt
    27541 tatcaaaaaa gaaggcgtcg tcatcacgac gctggcccgt tatttgttgg gtgaaaaatg
    27601 cggtaatcga ctgaaaacca tagatgagct ggcaactgaa tgccgttcat cggttggcct
    27661 gacgcaggcc gcgttgaaaa cgttggaatc aagtggagcg atacggattg aacgccgtgg
    27721 gcgcaatggc agttatctgg tcgaaatgga taacaaagcg ctgctgagtc atgtggatat
    27781 caataacgtt gtgtgtgcca tgcctttgcc ctatacccgc ttgtacgaag gtttagcaag
    27841 cgggctgaaa gcccagtttg atggcattcc tttttattat gcgcatatgc gtggcgcgga
    27901 tattcgtgtg gagtgtttgc ttaacggtgt ctatgacatg gcagtagttt cccgcctggc
    27961 ggcggaaagt tatctcagcc aaaacaattt gtgcatcgcc ctcgagcttg gcccgcatac
    28021 gtatgttggt gaacatcaac tgatatgccg caaaggtgag tctggaaatg ttaagcgagt
    28081 aggtctcgat agtcgttcgg cggatcagaa aatcatgacc gatgtctttt ttggcgatag
    28141 tgatgtggaa cgtgtcgatc tctcttatca cgagagttta caacgcattg ttaaaggcga
    28201 tgtcgatgcg gttatctgga acgtggtggc ggaaaacgaa ctgaccatgc tgggattaga
    28261 ggcgacgccg ctcacagacg atccgcgatt tttacaggcc accgaagccg tggtcctgac
    28321 gcgagtcgat gattacccaa tgcaacaact gctgcgtgcc gttgtagata aacacgccct
    28381 gctcgcccat caacaacggg tagtgagtgg ggaacaggaa ccgagttatt aaacgaaagg
    28441 catctgatat ggaaaccaga ctcaacctgc tttgcgaggc aggcgttatt gataaggaca
    28501 tctgcaaagg catgatgcag gtcgtcaacg tactggaaac agagtgccat ctgccggtgc
    28561 gcagtgagca aggaacgatg gcgatgacac atatggcgag tgcactgatg cgcagtcgcc
    28621 gtggtgaaga aatagagccg ctggataacg aattgctggc agagctggcg caatccagcc
    28681 actggcaagc cgttgtgcaa ttgcatcagg tgttgttgaa ggaattcgca ctggaagtta
    28741 atccgtgtga agaaggctat ttgctggcca acctttatgg attatggatg gctgctaacg
    28801 aagaggtttg aagctcccga caaatccacg tcgcacaacc taaatattca aaaaaatgaa
    28861 tatttaattc aaggaacaga aacgaggcaa caagatgttt gtagaagcat tgaaacgcca
    28921 gaacccggcg ctgatttccg ccgcactaag tttgtggcag cagggcaaga tcgccccgga
    28981 cagctgggtg atcgacgtgg atcaggtact ggaaaacggt aagcgactga ttgagacggc
    29041 gcggctttac ggcattgaac tgtatctgat gaccaagcag tttggccgta acccatggct
    29101 ggcggaaaaa ttgctggcat taggttacag cggcattgtg gcggtggatt acaaagaggc
    29161 gcgagtcatg cgccgcgctg gtttgtcggt ggcgcatcag gggcatctgg tacaaatccc
    29221 ttgtcatcag gttgctgacg ccgttgaaca gggcaccgac gtcatcaccg tgtttactct
    29281 cgacaaagcg cgggaagttt ctgcggcagc ggtgaaggcc ggacgtgtgc agtttgtgct
    29341 gctcaaagtt tatagcgacg atgattttct ttatccgggg caggagagcg gttttgtaca
    29401 gcattcgctg cacgaggtgg ttgctgaaat taagaaactg ccgggtctgc atttagccgg
    29461 acttacccat ttcccttgcc tgctttggga tgaggctgcc ggaaaagttt tgccgacacc
    29521 gaatcttcac acgctgatac aggcacggga tcaactggcg aaatctggta ttgcacttga
    29581 gcaactgaac gcgccttcag cgaccagctg cacttcgctg ccattactgg cgcaatacgg
    29641 tgtgactcat gccgaacccg gtcatgcgct gacgggcact attccggcaa accagcaggg
    29701 cgatcagtct gaacgtatcg cgatgctctg gttgagtgaa atctcccatc atttccgtgg
    29761 cgacagctac tgctacggtg gcggttacta ccgtcgtggt catgcgcaac atgcgttggt
    29821 gtttacgcca gaaaatcaaa agattactga aaccaatctc aaaactgtgg atgacagcag
    29881 tatcgactac accctgtcgc tggcaggcga gtttccggta agcagtgcag tggtgctctg
    29941 tttccgcacg cagatttttg tcacccgtag cgatgtggtg ctggtgtccg gtattcaccg
    30001 tggcgaaccg aaaatcgttg gtcgttatga cagtcttgga aactctctgg gggcgtaatg
    30061 gcgcgatttg tggtgttagt gattgatagc tttggcgtag gggcaatgaa agatgtcacg
    30121 ctggtgcgtc cgcaagatgc gggagcgaat acatgtggtc acatcctgag ccagttgccg
    30181 catttgcagc taccaacgct ggagaagctg gggctaatca acgcattggg ttatgcgcca
    30241 ggcgatatgc agccgtcaga ttccgcaacc tggggcgtgg cagagctgca acatgaaggt
    30301 ggcgatacct ttatggggca tcaggaaatt ttaggcacgc gcccgttacc gccgctgcgg
    30361 atgccttttt gcgatgtgat tgaccgtgtt gagcaggcat tagtatccgc cggttggcag
    30421 gtggagcgcc gtggcgatga actgcaattt ctgtgggtca atcaggcggt tgcgattggc
    30481 gataatctcg aggcggattt aggccaagtc tataacatta ccgccaatct ctctgtgatc
    30541 tcttttgacg acgcaatcaa aattggtcgt atcgtgcgtg agcaggtaca ggtcggtcgg
    30601 gtcattacat ttggtggcct gttaaccgac agtcaacgca ttctcgatgc cgcagaaagc
    30661 aaagaagggc gctttattgg tatcaatgcg ccgcgttctg gcgcttatga caacggcttc
    30721 caggtcgtgc atatgggcta cggtgtcgat aaaaaagtgc aggtgccgca aaaactgtat
    30781 gaggcgggcg tgccaaccgt gctggtgggt aaggtggcag atatcgtcag caatccttat
    30841 ggcgtgagct ggcaaaacct ggtggatagc cagcggatta tggatatcac cctcgacgaa
    30901 tttaacaccc atccgacggc gtttatttgc accaatatcc aggaaaccga cctcgctggt
    30961 catgcagaag acgtcgcacg ttatgccgaa cgtttgcagg tcgttgaccg taaccttgcc
    31021 cggcttgttg atgcgatgca gccagatgat tgcctggtcg tgatggcgga tcacggcaac
    31081 gatccgacca ttggtcacag ccaccatacc cgcgaagtgg tgccgctgct ggtttatcag
    31141 caaggcctgg ctgctacgca gctcggtgtg cgcaccacgc tttctgatgt gggagctacc
    31201 gtgtgtgaat ttttccgtgc gccaccgcca caaaatggtc gctcttttct ttcctccctc
    31261 cggtttgcag gagacaccct atgagttttg atccgacggg ttacaccctg gcccatgagc
    31321 atctgcatat tgatctctcc ggctttaaaa acaacgtgga ctgccgcctt gatcagtatg
    31381 cgttcatttg ccaggagatg aacgacctga tgacccgggg tgtacgtaat gtgattgaga
    31441 tgaccaaccg ttacatgggg cgcaatgcgc aatttatgct cggtgtaatg cgcgaaaccg
    31501 ggatcaacgt ggtggcctgt actggttatt accaggatgc gtttttcccg gaacatgtgg
    31561 tgacccgcag cgtgcaggaa ctggcgcagg agatggtcga tgaaattgaa cagggtatcg
    31621 atggcacgga gctgaaagcc gggctcatcg cggagatcgg ctccagcgaa ggaaagatta
    31681 cgccgctgga agagaaggta tttattgccg ctgcgctggc gcataaccag accggacgcc
    31741 cgatctccac gcatacgtcg ttcagcacca tggggctgga acaactggct ctgttgcaag
    31801 cccacggagt tgatctttcg cgcgtcaccg ttggtcactg cgatctgaaa gacaacctcg
    31861 acaacatttt gaagatgatc gatctcggcg cgtacgtgca gttcgacacc attggtaaga
    31921 acagttacta cctggacgaa aagcgcattg cgatgctcca cgctacgtga ccgtgggttg
    31981 ctgaaccgcg tcatgctgtc gatggatatt acgcgccgct cccatttaaa agccaatggt
    32041 ggttatggct atgactattt attgaccacc tttattccgc aattgcgcca gtcaggattc
    32101 agtcaggccg atgtggatgt gatgttacgt gaaactccct ctcaattttt ccaataagga
    32161 cagactcatg aaaaagattg gcgttgcagg cttacagcgt gagcagatta aaaaaaccat
    32221 tgaagcgacg gctcctggca gttttgaagt tttcattcac aacgacatgg aagcggcaat
    32281 gaaagtgaaa tccgggcaac tggattacta catcggtgcg tgtaataccg gtgcgggcgc
    32341 ggcattgtcg attgccatcg cggtgattgg ctataacaaa agttgcacca ttgccaaacc
    32401 aggcattaaa gcgaaagacg agcatatcgc caaaatgatc gctgaaggaa aagtggcgtt
    32461 tggcctttcc gttgagcacg tcgaacacgc gattccgatg ctgattaacc atctgaaata
    32521 aaaggcacga ctatggatct gtatattcag attatcgtgg tggcgtgcct gacgggtatg
    32581 acatcgcttc tggcgcatag ctcggcggct gtttttcatg acggcatccg cccgatcctg
    32641 ccgcaactga ttgaaggcta tatgaaccgt cgcgaggcgg ggagtatcgc ttttggtctg
    32701 agcattggtt ttgtggcctc ggtggggatc tcttttaccc tgaaaaccgg gctgctcaac
    32761 gcatggttac tctttcttcc taccgatatc ctcggcgtac tggcgataaa cagcctgatg
    32821 gcgtttggtc ttggcgctat ctggggcgtg ttgatcctta cttgcctgtt gccagtaaac
    32881 cagctgctga ccgcgctgcc ggtggatgta ttaggtagcc tcggggaatt aagctcgccg
    32941 gtagtttctg cttttgcact gttcccgctg gtggcgattt tctaccagtt tggctggaag
    33001 caaagtctgg tcgccgccgt ggttgttctg atgacccgtg tggtagtcgt gcgctatttc
    33061 ccacatctta accctgaatc catcgaaatc tttattggca tggtgatgct gctggggatc
    33121 gcgataactc acgacctgcg tcatcgtgat gaaaatgata ttgatgccag cgggctttcg
    33181 gtgtttgaag aacgcacgtc gcggattatc aaaaacttac cctatatcgc catcgtggga
    33241 gcattgattg ccgccgttgc cagcatgaag attttcgccg gcagtgaagt gtcgatcttc
    33301 actctggaga aagcgtactc cgcaggcgta acgccggaac aatcgcaaac gctgatcaac
    33361 caggcggcac tggcagaatt tatgcgcggg ctgggttttg taccgttgat tgccaccacc
    33421 gccttagcaa cgggtgtgta tgcagttgcg ggctttacct ttgtttatgc ggtgggctat
    33481 ctctcgccga atccgatggt tgcagcggta ttaggcgcag tggttatttc ggcggaagtc
    33541 ttgctgcttc gttctatcgg caaatggctg ggacgctacc cgtcggtgcg taatgcgtcg
    33601 gataacatcc gtaacgccat gaatatgctg atggaagtgg cgctgctggt cggttcgatt
    33661 ttcgcagcaa ttaagatggc gggttatacc ggattctcta tcgcggttgc catttacttc
    33721 ctcaacgaat ccctgggccg tccggtacag aaaatggcgg caccggtcgt ggcagtaatg
    33781 atcaccggta ttctgctgaa tgttctttac tggcttggcc tgttcgttcc ggcttaagga
    33841 aggcacctat gaagacgttt cctctgcaaa gcctgacgct tattgaggcg cagcaaaagc
    33901 agtttgcgct ggtggacacg atttgccgtc actttcccgg cgcggagttt ctaaccagcg
    33961 gtgatttggg cttaacgccg gggctgaatc aaccgcgtat tacccaacgg gtggagcagg
    34021 tgctggctga tgcatttcac gcacaggctg cggcgctggt gcagggcgcg gggactggcg
    34081 cgattcgcgc cgggctggca gctttgctca aaccggggca gcgtcttctg gtgcatgacg
    34141 cgcctgttta cccgacgaca cgggttatta ttgagcagat ggggctgacg cttattactg
    34201 ttgatttcaa tgacctgtcg gcactgaagc aggtcgtcga cgagcaacaa ccggatgcgg
    34261 cgctggtgca gcatacgcgc cagcagccgc aggacagcta cgtgctggca gatgtgctgg
    34321 caacgttgcg ccagcgttaa ccgatgacaa ctatgcggtg atgaaggtgg cgcgaatcgg
    34381 ctgtgaatgc ggcgcgaatg tctcgacatt ttcctgcttc aagctatttg ggccagaggg
    34441 tgttggtgca gtggtcggcg atgctgatgt tatcaaccgt attcgcgcca cgctttactc
    34501 cggcggtagc cagatccagg gcgcacaggc gctggaagta ttgcgttgtc tggtgtttgc
    34561 gccagtgatg cacgcggtgc aggcaggggt atctgaacgg ttgctggctt tgcttaacgg
    34621 tggtgaggtg ccggaagtga aaagcgcggt gattgctaat gcgcagtcga aggtgttgat
    34681 tgtcgagttt catcagccga ttgccgccag agtgctggaa gaggcgcaaa agcgcggtgc
    34741 cttgccttac ccggtgggtg cagagtcgaa atatgaaatc ccgccgctct tttatcgcct
    34801 ttccggaacg tttcgccagg cgaatccaca atcagaacat tgtgcgattc gcattaaccc
    34861 gaatcgcagc ggtgaagaga cggtgctgcg gattttgcgt gagagtattg ccagtattta
    34921 atgctggata gcaccgtcaa gctaaattcc gtactgaacg gtcccctcgc ccctttgggg
    34981 agagggttag ggtgagggga acgtacggga tgtaaaattc aacgcgccag catcgccgga
    35041 tgcgatgctg gcgcatctta tccggcctac ggttaatgtc ttttattatc aatagttaag
    35101 gtgatgcgat tggcgcggca gaagagttcg gagacgtgca ccggtttgtc attctgatca
    35161 aaggcgattt tgctgatgcg aaacaacggt tcgcccagtt cgcatttcag ccattttgcc
    35221 tgcgggcggg tggcggcaaa gatatcgatg gtctttttgt cgctgaccac tcgcgtgtca
    35281 aaacgctcct gaaataactg ataggtggag cttccttcga cgtaaatctc atcaaagtca
    35341 ggataacgcg acagcgggat ccatgaacta tcaataaaca gcggctcttt atcgagatac
    35401 atcacccggc agagatggaa cacttcgctg tttccgggga tgttcagctt tttgcaaaac
    35461 ggcgcggcgc tgacccgttc ctgttcgatc actttctctt tcgtcgcctt gccttgtgag
    35521 acgccaaaat cggtaaaacc actgacagta agcagggcgt tttcaacttt ctggctttgt
    35581 acaaaggtgc cttttccctg ccagcggatc agtacgccgt ccgccactaa gtcgctgatg
    35641 gctttgcgaa tggtaatgcg gctgacgtta tattgtgtac aaagctcgtt ttcggtaggg
    35701 atctgttgcc cggcctggta aaccccctgc gcgatatcat ccagcagtcg ctggcggacg
    35761 gtagcgtaga ggagttgatg agagtagcgg tccgtagctg acataatcga ccctgaaata
    35821 aagaatgaat tactcggatt atagggtcgt tttccggcaa gtaacagcac gttggcgtga
    35881 agatgctcac gccaacgtta tacctaccag gcaccgtggt actgaatggt tttcgccgcg
    35941 cacgccgttc cctgcgccat cgcctgcggt aatgtcatcc ccgcagacca gccgcaaagg
    36001 aatccggcaa tgaacgaatc tccggcaccc atggtgtcga taaccgtcac cggttcagga
    36061 gcctgacgcc agaactgcgc gccatcccag gcaatgctgc cgttttcacc cagcgtgaca
    36121 atcactgttc ctgcgccacg ggcaacaatc gctttcatct tcagacgcag cgtttcgtct
    36181 tcttgcggtg cggaggcaaa ggcaaaatcg agatgcggca ccagtgtctg ccagagcggg
    36241 ctgtcccact tgtcggagaa gtcgaaagcg gtaagtttgc ccgcagcgtg cagctgtggg
    36301 aatgcgtctt ccgcatgtcc ccagattgcc gcgtgcacaa tgtcatactg cgccagccag
    36361 gcgtaatcct cttcactcag ggcaaagtcg gccatcacgc cttcggtgta gtcgccaaaa
    36421 acgcgatcat tgtcgtgcag ttccacctga gtttgtgcgg taacgccgtg tttcgtatgg
    36481 acatggctga tatcgacgcc catgcgggcg agatcctgct tcagctttgt gccgtagtca
    36541 tcgtcaccca cccaggtaat gcatcccggc tgtatgccgt agcgagtgca gtacaccgcc
    36601 acattgaccg cattaccgcc agaaaacgct ttattcagtt gcgggtagat atcgacgcag
    36661 ttatcgccga ttgtcgccag ggttttcatc tctcatcctc cggcagcagc gcgcgaaagc
    36721 gttccagcgc ctggcgggca tagagtctgg gctcgttcat atacatcgtc accagctcca
    36781 ccgtacagta accctcatag ccccgctcaa taatatcgcg catcagttcc cgcagcggca
    36841 ttttgccttc tccaggaatg taatgcgtgt cgctggcccc gtcgctgtcg acaatatgca
    36901 gatgacgtaa tttatcgccc agtttgtcga aataactcat caccggttcc gcctggacat
    36961 acggcgcgca aatgtcgacc atgctgaaca ggcgcggcga aggcaccagc gccagcgcat
    37021 gaagcacatc attagcatta cacacgatgt tcgattcata cggcgttaac ggttcgagga
    37081 ttagatccat gccgatgttt tccgcgtact catacagttc gcttaggttc tctgccagcc
    37141 gtccccagat aacattaggt ggcgtgagat agcccgcgtg ggccgcggaa atcagcgtat
    37201 aacccgcgtt catctctttt gccatatcca tcgccagctt gatcatgtcg aggctttcgc
    37261 gacgcatatg ttcatcgccc agcatcatgt tatacggata gccattggtt tctggcgtat
    37321 agccgataat cggcatctga tacgtctgcg ccagcgcctt gatttgtttg atgccgcccg
    37381 cttttaagtc cggcgcgaac gcgtgcgggc gaccgcccca aatttcgatg ccgtcgtaac
    37441 ccagctcgct tgcatcacga aatgcgtgtt caataggcag ccgctggtgg ccgcaggtaa
    37501 acatacctgt tttcatcggg taactccttg cgtaaatccg gcccgttgcc gggccgggcg
    37561 agggattaat attccaccag accaccgtaa tagcggcgtt catccgggtt gtgatctttg
    37621 taaatagaca ggtagtagca gagccactcc attggcacga acatcaggaa cggtgccagc
    37681 cacgggtgca gcccttgcga aatttcggcg taatcgatga cgatcacgtt gtcagtacgc
    37741 tgtttaacaa agttaatggc gcgttcggtg gtgtggcgac tttcatcatt gccgagcagg
    37801 aacaggaacg gaacgcccgg ttcgacaatc tccagcgggc catggcggaa ctctccgctc
    37861 tcaatcacgc agccgtgcgt ccaggtaaat tccatcagcg ttacaatgcc ttctttgtaa
    37921 cccagcggac gcagcggacc cgcagcaacg gtataaatca tcggccactg gctggccagt
    37981 tcaccaagct ggcggccttt ttcttcccag gtgcgtacca gatgaccgag cgcattcggc
    38041 aactgcttga gatcgttttt gatcttgccg atttccgcgt tcggcgcgag gcgggtgatc
    38101 atctccagca ccacgctgta gcagagcagc aggtgaattt cccagataca gtcggcctga
    38161 taatcaatgc taaattccgc cgccgaggta atcgggctgt ccgcgcgttt ggtgaacgcc
    38221 gcagtgagtg cgccgcaggc ccggcccagc tccagcgctt tgattacctc ttccgtttta
    38281 ccgtagtcag aaacgccaat caccgcgcaa cgatcgtcga ggcgatacgg ggtgttatcg
    38341 cagaactccc agccggaaat ggcgtagacc tgaagatcgg aaaagcgatc cgccagatgt
    38401 ttcgccgctt gcgccgcgtt gagtggcgag ccgcaggcaa cgaaataaat acgatcaatg
    38461 tcgcgcttca ccatctcttc cacgatggcg tgcaccagcg gaacgtcatg gctgagaact
    38521 ttttccactt cctgaaccat attttcggtg accagaaagt ccacggtgct tttatcaata
    38581 tccaacattt tattttctcc agataacatt acgacaaagc gttgagctgg cggctacgct
    38641 tcgcccagaa ggcgtaagca ggcagaccag tagcaataac gatgacggcg cagataaggc
    38701 cgggaatcgg tgcccagaca aaggttgagg cgaccagaat gaggcttgac gcaatggcga
    38761 gggtggtcat cagcccgaaa gcaggagtac gccacagcgg tttgtaatcg tcgcgtttac
    38821 gacaccagat gatggagccg aaggtgaggg tatttttgaa acacatcacc agggtgaaat
    38881 aacccagcag gctggtgaga tcggaaacga agatgaagaa gagcccctgc gccccttgca
    38941 ggatgatgga gacatccggc gtgttgtatt tcggatgcac atggccgaag catttaaaga
    39001 acaggttgtc tttcgccatc gcgtattcca gccgcggctg gtacatcacg cagctggaaa
    39061 gcgaaccaag aatgacgatc atcgccgtga tggcaacaaa gatcccagcg gtgctgccga
    39121 gtgcggggat ccaggtcagg gcgtcggaaa tcggcgtttc agaattggcg agtttgtcga
    39181 agggcatcag gtcggaaatc accagcgcca gcagggtgta gagcaccaga accagcagac
    39241 aggaaccaat cagcgctcgt ggcatggttt ttccggggtt tttaatttcg ccggtcatat
    39301 aacagataga ggccatgccg gtatacgacc aactggtggc agagatcccc gccagcagcg
    39361 ccataaagct gcccgttgcg ccaatcgcag tggtggtagg ggcggcaaaa ttctccgctt
    39421 taaaccagaa gatcccaagg ccaatgacga tagtgaacgg gataattttg gcgatggtaa
    39481 ttagcgtctg aaacgctgcg ccgccttcaa cggagcgcag gtgtagcaac ataaaggcga
    39541 taattaatcc ggcggcgata aatttaccgg gcaacggatc gataggcgtt aaaaagccaa
    39601 gattgctgac aatcgccagc gccataatcg acaatgacgg cgcatcgttg gcccagaagc
    39661 tggcccagcc ggagaggaaa gccagcggtc ggcttccggc atttttcaga taaacataat
    39721 ctgcgccatt ttccggataa gcggtggata gttccgcata gacgcacatt tgcgggatca
    39781 caattaaccc gccaatgaca aacgtgagca ccgtaagcca cggcgtgccc gctgcttttg
    39841 ccacttcacc cacagataca aaaataccgg agccgacggt tgtcccgacg gcgattgcaa
    39901 gaacggccca aaatccgagc ttgcgttgga gttcctggct tcccatagcg ataccttttt
    39961 cttgtccaac acgttgtagg ggagagtttg cagtcattta aaaggtaaca tgacaatgca
    40021 tgatgaatat aataacatat gatgttatgt aatgcggagg aagatcacaa aatttcgcac
    40081 aggatcgcgc tgtggctaat gaatgtagtt atccaattga aattaaagtg aaaatatttt
    40141 tacgggtggg gagcaagaag gatatagaaa caaatacgcc ctcggaaaat ccagagggcg
    40201 tcgggcaatt aaaccggtgt tagccgattt ctgtcagaga cttactgtgc agtaggaccg
    40261 caaccgccaa tgattttaga aatagaaatt gccgggtgca gcaggtagtc gtaagagcag
    40321 ttcttatcac ggttttcaat atgaccagta catgcagtta acgtagccag tactgcacct
    40381 accagtgcaa ctttaataaa tttgttcatt tacattcccg gtaatgactc caacttactg
    40441 atagtgtttt atgttcagat aatgcccgat gaccttgtca tgcagctcca ccgattttga
    40501 gaacgacagt gacttcc
//
LOCUS       DAJVSY010000013        40514 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.013, whole genome shotgun sequence.
ACCESSION   DAJVSY010000013 DAJVSY010000000
VERSION     DAJVSY010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 40514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40514
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.013"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(154..1011)
                     /gene="murI"
                     /locus_tag="OQQ19_000660"
     CDS             complement(154..1011)
                     /gene="murI"
                     /locus_tag="OQQ19_000660"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312925.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HCS1802398.1"
                     /translation="MATKLQDGNTPCLAATPSEPRPTVLVFDSGVGGLSVYDEIRHLL
                     PDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERYPLALAVVACNTASTVSLPA
                     LREKFDFPVVGVVPAIKPAARLTANGIVGLLATRGTVKRSYTHELIARFANECQIEML
                     GSAEMVELAEAKLHGEDVSLDALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVL
                     PEGTRLVDSGAAIARRTAWLLEHEAPDAKSADANIAFCMAMTPEAEQLLPVLQRYGFE
                     TLEKLAVLG"
     gene            complement(956..2804)
                     /gene="btuB"
                     /locus_tag="OQQ19_000661"
                     /pseudo
     CDS             complement(956..2804)
                     /gene="btuB"
                     /locus_tag="OQQ19_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418401.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent vitamin B12 receptor BtuB"
     regulatory      complement(2858..3048)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            3162..4262
                     /gene="trmA"
                     /locus_tag="OQQ19_000662"
     CDS             3162..4262
                     /gene="trmA"
                     /locus_tag="OQQ19_000662"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HCS1802399.1"
                     /translation="MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHY
                     RMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLR
                     HKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK
                     IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELY
                     CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG
                     VREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPCILYISCNPETLCKNLE
                     TLSQTHKVERLALFDQFPYTHHMECGVLLTAK"
     gene            complement(4302..4661)
                     /locus_tag="OQQ19_000663"
     CDS             complement(4302..4661)
                     /locus_tag="OQQ19_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YijD family membrane protein"
                     /protein_id="HCS1802400.1"
                     /translation="MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLV
                     LTVYCLHQRYLNRTMPVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIM
                     VFWIGAKMRNRKQEVAE"
     gene            complement(4661..5311)
                     /gene="fabR"
                     /locus_tag="OQQ19_000664"
     CDS             complement(4661..5311)
                     /gene="fabR"
                     /locus_tag="OQQ19_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002460670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor FabR"
                     /protein_id="HCS1802401.1"
                     /translation="MMGIRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREAGI
                     APTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGN
                     NPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVT
                     IVFSAGAEALDVGVEQRRQLEERLVLQLRMISKGAYYWYRREQEKTAIIPGNVKDE"
     gene            5632..7032
                     /gene="sthA"
                     /locus_tag="OQQ19_000665"
     CDS             5632..7032
                     /gene="sthA"
                     /locus_tag="OQQ19_000665"
                     /EC_number="1.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418397.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Si-specific NAD(P)(+) transhydrogenase"
                     /protein_id="HCS1802402.1"
                     /translation="MPHSYDYDAIVIGSGPGGEGAAMGLVKQGARVAVIERYQNVGGG
                     CTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADILNHADNVINQQTRMRQ
                     GFYERNHCEILQGNARFVDEHTLVLDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTH
                     PRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQE
                     MSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTD
                     SLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALV
                     KGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMN
                     VGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTM
                     AEAYRVAALNGLNRLF"
     gene            complement(7015..7932)
                     /gene="oxyR"
                     /locus_tag="OQQ19_000666"
     CDS             complement(7015..7932)
                     /gene="oxyR"
                     /locus_tag="OQQ19_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016831323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator OxyR"
                     /protein_id="HCS1802403.1"
                     /translation="MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELG
                     VMLLERTSRKVLFTQAGMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVG
                     PYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCVILALVKESEAFIEVPL
                     FDEPMLLAIYEDHPWANRECVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTH
                     FRATSLETLRNMVAAGSGITLLPALAVPPERKRDGVVYLPCIKPEPRRTIGLVYRPGS
                     PLRSRYEQLAEAIRARMDGHFDKVLKQAV"
     gene            complement(8199..9572)
                     /gene="argH"
                     /locus_tag="OQQ19_000667"
     CDS             complement(8199..9572)
                     /gene="argH"
                     /locus_tag="OQQ19_000667"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HCS1802404.1"
                     /translation="MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKAL
                     VTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKK
                     LHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRA
                     QPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGF
                     ASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSG
                     SSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDAFDT
                     WLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAV
                     VEAIRQGKPLEDLPLDELQKFSHVIGEDVYPILSLQSCLDKRAAKGGVSPQQVAQAIA
                     FAQARLG"
     gene            complement(9633..10409)
                     /gene="argB"
                     /locus_tag="OQQ19_000668"
     CDS             complement(9633..10409)
                     /gene="argB"
                     /locus_tag="OQQ19_000668"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418394.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HCS1802405.1"
                     /translation="MMNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGG
                     GCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGL
                     FLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVN
                     ADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKV
                     NAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRILA"
     gene            complement(10417..11421)
                     /gene="argC"
                     /locus_tag="OQQ19_000669"
     CDS             complement(10417..11421)
                     /gene="argC"
                     /locus_tag="OQQ19_000669"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HCS1802406.1"
                     /translation="MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKL
                     ISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDL
                     SGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAAQ
                     LALKPLIDADLLDLNQWPAINATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEI
                     ATHLGADVIFTPHLGNFPRGILETITCRLKSGVTQAQVAQVLQQAYAHKPLVRLYDKG
                     VPALKNVVGLPFCDIGFAVQGEHLIIVATEDNLLKGAAAQAVQCANIRFGYAETQSLI
                     "
     gene            11575..12726
                     /gene="argE"
                     /locus_tag="OQQ19_000670"
     CDS             11575..12726
                     /gene="argE"
                     /locus_tag="OQQ19_000670"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HCS1802407.1"
                     /translation="MKNKLPPFIEIYRALIATPSISATEEALDQSNADLITLLADWFK
                     DLGFNVEVQPVPGTRNKFNMLASIGQGAGGLLLAGHTDTVPFDDGRWTRDPFTLTEHD
                     GKLYGLGTADMKGFFAFILDALRDIDVTKLKKPLYILATADEETSMAGARYFAETTAL
                     RPDCAIIGEPTSLQPVRAHKGHISNAIRIQGQSGHSSDPARGVNAIELMHDAIGHILQ
                     LRDNLKERYHYEAFTVPYPTLNLGHIHGGDASNRICACCELHMDIRPLPGMTLNELNG
                     LLNDALAPVIERWPGRLTVDELHPPIPGYECPPNHQLVEVVEKLLGAKTEVVNYCTEA
                     PFIQTLCPTLVLGPGSINQAHQPDEYLETRFIKPTRELIIQVIHHFCWH"
     gene            13078..15729
                     /gene="ppc"
                     /locus_tag="OQQ19_000671"
     CDS             13078..15729
                     /gene="ppc"
                     /locus_tag="OQQ19_000671"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004203687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HCS1802408.1"
                     /translation="MNEQYSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKS
                     SRAGNDANRQELLTTLQNLSNDELLPVARAFSQFLNLANTAEQYHSISPKGEAASNPE
                     VIARTLRKLKNQPELSEDTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQ
                     LDNKDIADYEHNQLMRRLRQLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVP
                     NYLRELNEQLEENLGYKLPVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKAT
                     DLFLKDIQVLVSELSMVEAPPELLALVGEEGAAEPYRYLMKNLRSRLMATQAWLEARL
                     KGEELPKPEGLLTQNEELWEPLYACYQSLQACGMGIIANGDLLDTLRRVKCFGVPLVR
                     IDIRQESTRHTEALGELTRYLGIGDYKSWSEADKQAFLIRELNSKRPLLPRNWQPSAE
                     TREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEAGIGFAMPVAPLFETL
                     DDLNNANDVMTQLLNIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIR
                     TCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLP
                     EITVSSLSLYTGAILEANLLPPPEPKESWRRIMDELSVISCDVYRGYVRENKDFVPYL
                     RSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQK
                     VVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKEL
                     RNLQEEDIKVVLAIANDSHLMADLPWIAESIQLRNIYTDPLNVLQAELLHRSRQAEKE
                     GQEPDPRVEQALMVTIAGIAAGMRNTG"
     gene            15912..17645
                     /locus_tag="OQQ19_000672"
     CDS             15912..17645
                     /locus_tag="OQQ19_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709755.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase CptA"
                     /protein_id="HCS1802409.1"
                     /translation="MHSTEVQAKPLFSWKALGWALLYFWFFSTLLQAIIYISGYSGTN
                     GIRDSLLFSSLWLIPVFLFPKRIKIIAAVIGVVLWAASLAALCYYVIYGQEFSQSVLF
                     VMFETNTNEASEYLSQYFSLKIVLIALAYTAVAVLLWTRLRPVYIPKPWRYVVSFALL
                     YGLILHPIAMNTFIKNKPFEKTLDNLASRMEPAAPWQFLTGYYQYRQQLNSLTKLLNE
                     NNALPPLANFKDESGNEPRTLVLVIGESTQRGRMSLYGYPRETTPELDALHKTDPNLT
                     VFNNVVTSRPYTIEILQQALTFANEKNPDLYLTQPSLMNMMKQAGYKTFWITNQQTMT
                     ARNTMLTVFSRQTDKQYYMNQQRTQSAREYDTNVLKPFQDVLNDPAPKKLIIVHLLGT
                     HIKYKYRYPENQGKFDGNTDHVPPGLSAEELESYNDYDNANLYNDHVVASLIKDFKAA
                     DPNGFLVYFSDHGEEVYDTPPHKTQGRNEDNPTRHMYTIPFLLWTSEKWQATHPRDFS
                     QDVDRKYSLAELIHTWSDLAGLSYDGYDPTRSVVNPQFKETTRWIGNPYKKNALIDYD
                     TLPYGDQVGNQ"
     gene            17860..18711
                     /locus_tag="OQQ19_000673"
     CDS             17860..18711
                     /locus_tag="OQQ19_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1802410.1"
                     /translation="MYHDISYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLE
                     IVLEGEFVDTGAGATLVPGDVLYVAAGGWNFPQWKTPTTTFSVLFGKQQLGFSVVQWD
                     GKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQ
                     IQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYL
                     NHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLT
                     EKPTTPE"
     gene            complement(18698..19039)
                     /locus_tag="OQQ19_000674"
     CDS             complement(18698..19039)
                     /locus_tag="OQQ19_000674"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose-like transporter subunit IIB"
                     /protein_id="HCS1802411.1"
                     /translation="MAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVSIETQGALG
                     TENRLADEDIRRADVALLITDIELAGAERFEHCRYVQCSIYAFLREPQRVMSAVRKVL
                     SAPQQTHLILE"
     gene            complement(19041..19919)
                     /locus_tag="OQQ19_000675"
     CDS             complement(19041..19919)
                     /locus_tag="OQQ19_000675"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418387.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[formate-C-acetyltransferase]-activating enzyme"
                     /protein_id="HCS1802412.1"
                     /translation="MTSSAGQRISCNVVETRLNDVARIFNIQRYSLNDGEGIRTVVFF
                     KGCPHLCPWCANPESISGKIQTVRREAKCLHCAKCLRDADECPSGAFERIGRDISLDA
                     LEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPAS
                     KLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPRLPLIPG
                     FTLSRENMQQALDVLIPLNIRQIHLLPFHQYGEPKYRLLGKTWSMKDVAAPSSADVAT
                     MREMAERAGFQVTVGG"
     gene            complement(19885..22182)
                     /locus_tag="OQQ19_000676"
     CDS             complement(19885..22182)
                     /locus_tag="OQQ19_000676"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HCS1802413.1"
                     /translation="MTNRISRLKTALFANTREISLERALLYTASHRQTEGEPVILRRA
                     KATAYILEHVEISIRDEELIAGNRTVKPRAGIMSPEMDPYWLLKELDQFPTRPQDRFA
                     ISEEDKRIYREELFPYWEKRSMKDFINGQMTDEVKAATSTQIFSINQTDKGQGHIIID
                     YPRLLNHGLGELVAQMQQHCQQQPENHFYQAALLLLEASQKHILRYAVLAETMAANCT
                     DAQRREELLTIAEISRHNAEHKPQTFWQACQLFWYMNIILQYESNASSLSLGRFDQYM
                     LPFYQASLTQGEDPAFLKELLESLWVKCNDIVLLRSTSSARYFAGFPTGYTALLGGLT
                     ENGRSAVNVLSFLCLDAYQSVQLPQPNLGVRTNALIDTPFLMKTAETIRLGTGIPQIF
                     NDEVVVPAFLNRGVSLEDARDYSVVGCVELSIPGRTYGLHDIAMFNLLKVMEICLHEN
                     EGNAALTYEGLLEQIRAKISHYITLMVEGSNICDIGHRDWAPVPLLSSFISDCLEKGR
                     DITDGGARYNFSGVQGIGIANLSDSLHALKGMVFEQQRLSFDELLSVLKANFATPEGE
                     KVRARLINRFEKYGNDIDEVDNISAELLRHYCKEVEKYQNPRGGYFTPGSYTVSAHVP
                     LGSVVGATPDGRFAGEQLADGGLSPMLGQDEQGPTAVLKSVSKLDNTLLSNGTLLNVK
                     FTPATLEGEAGLRKLADFLRAFTQLKLQHIQFNVVNADTLWEAQQRPQDYAGLVVRVA
                     GYSAFFVELSKEIQDDIIRRTAHQL"
     gene            complement(22233..22553)
                     /locus_tag="OQQ19_000677"
     CDS             complement(22233..22553)
                     /locus_tag="OQQ19_000677"
                     /EC_number="2.7.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose-like transporter subunit IIB"
                     /protein_id="HCS1802414.1"
                     /translation="MTKIIAVTACPSGVAHTYMAAEARESAAKAKGWEVKVETQGSIG
                     LENELTAEDVASADMVILTKDIGIKFEERFAGKTIVRVNISDAVKRADAIMSKIEAHL
                     AQTA"
     gene            complement(22568..23647)
                     /locus_tag="OQQ19_000678"
     CDS             complement(22568..23647)
                     /locus_tag="OQQ19_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit EIIC"
                     /protein_id="HCS1802415.1"
                     /translation="MNELVQILKNTRRHLMTGVSHMIPFVVSGGILLAVSVMLYGKGA
                     VPDAVADPNLKKLFDIGVAGLTLMVPFLAAYIGYSIAERSALAPCAIGAWVGNSFGAG
                     FFGALIAGIIGGIVVHYLKKIPVHKVLRSVMPIFIIPIVGTLITAGIMMWGLGEPVGA
                     LTNSLTQWLQGMQQGSIVMLAVIMGLMLAFDMGGPVNKVAYAFMLICVAQGVYTVVVI
                     AAVGICIPPLGMGLATLIGRKNFSAEERETGKAALVMGCVGVTEGAIPFAAADPLRVI
                     PSIMVGSVCGAVTAALVGAQCYAGWGGLIVLPVVEGKLGYIAAVAVGAVVTAVCVNVL
                     KSLARKNGSSTDEKEDDLDLDFEIN"
     gene            23956..26457
                     /gene="ptsP"
                     /locus_tag="OQQ19_000679"
     CDS             23956..26457
                     /gene="ptsP"
                     /locus_tag="OQQ19_000679"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312903.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HCS1802416.1"
                     /translation="MALIVEFICELPNGVHARPASHVETLCNTFSSQIEWHNLRTDRK
                     GNAKSALALIGTDTLAGDNCQLLISGADEQEAHQRLSQWLRDEFPHCDAPLAEVKSDE
                     LEPLPVSLTNLNPQIIRARTVCSGSAGGILTPISSLDLNALSNLPAAKDVDAEQSALE
                     NGLTLVLKNIEFRLLDSDGATSAILEAHRSLAGDTSLRQHLLTGVSEGLSCAEAIVAS
                     ANHFCEEFARSSSSYLQERALDVRDVCFQLLQQIYGEQRFPAPGKLTQPAICMADELT
                     PSQFLELDKNHLKGLLLKSGGTTSHTVILARSFNIPTLVGVDIDALTPWQHQTIYIDG
                     NAGAIVVEPGEAVARYYQQEARVQDALREQQRVWLTQQARTADGIRIEIAANIAHSVE
                     AQAAFGNGAEGVGLFRTEMLYMDRTSAPGESELYNIFCQALESANGRSIIVRTMDIGG
                     DKPVDYLNIPAEANPFLGYRAVRIYEEYASLFTTQLRSILRASAHGSLKIMIPMISSM
                     EEILWVKEKLAEAKQQLRNEHIPFDEKIQLGIMLEVPSVMFIIDQCCEEIDFFSIGSN
                     DLTQYLLAVDRDNAKVTRHYNSLNPAFLRALDYAVQAVHRQGKWIGLCGELGAKGSVL
                     PLLVGLGLDELSMSAPSIPAAKARMTQLDSRECRKLLNQAMACRTSLEVEHLLAQFRM
                     TQQDAPLVTAECITLESDWRSKEEVLKGMTDNLLLAGRCRYPRKLEADLWAREAVFST
                     GLGFSFAIPHSKSEHIEQSTISVARLQAPVRWGDDEAQFIIMLTLNKHAAGDQHMRIF
                     SRLARRIMHEEFRNALVNAASADAIASLLQHELEL"
     gene            26469..27131
                     /gene="fsa"
                     /locus_tag="OQQ19_000680"
     CDS             26469..27131
                     /gene="fsa"
                     /locus_tag="OQQ19_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HCS1802417.1"
                     /translation="MELYLDTANVAEVERLARIFPIAGVTTNPSIIAASKESIWEVLP
                     RLQKAIGDEGILFAQTMSRDAQGMVEEAKRLRDAIPGIVVKIPVTSEGLAAIKMLKKE
                     GITTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQGGDGIRTVQELQALLEMHAPES
                     MVLAASFKTPRQALDCLLAGCESITLPLDVAQQMLNTPAVESAIEKFEHDWNAAFGTT
                     HL"
     gene            27142..28245
                     /gene="gldA"
                     /locus_tag="OQQ19_000681"
     CDS             27142..28245
                     /gene="gldA"
                     /locus_tag="OQQ19_000681"
                     /EC_number="1.1.1.6"
                     /EC_number="1.1.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional L-1,2-propanediol
                     dehydrogenase/glycerol dehydrogenase"
                     /protein_id="HCS1802418.1"
                     /translation="MDRIIQSPGKYIQGADVINRLGEYLKPLAERWLVVGDKFVLGFA
                     QSTVEKSFKDAGLVVEIAPFGGECSQNEIDRLRGIAETAQCGAILGIGGGKTLDTAKA
                     LAHFMGVPVAIAPTIASTDAPCSALSVIYTDEGEFDRYLLLPNNPNMVIVDTKIVAGA
                     PARLLAAGIGDALATWFEARACSRSGATTMAGGKCTQAALALAELCYNTLLEEGEKAM
                     LAAEQHVVTPALERVIEANTYLSGVGFESGGLAAAHAVHNGLTAIPDAHHYYHGEKVA
                     FGTLTQLVLENAPVEEIETVAAFSHAVGLPITLAQLDIKEDVPAKMRIVAEAACAEGE
                     TIHNMPGGATPDQVYATLLVADQYGQRFLQEWE"
     gene            28519..29136
                     /locus_tag="OQQ19_000682"
     CDS             28519..29136
                     /locus_tag="OQQ19_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1287 domain-containing protein"
                     /protein_id="HCS1802419.1"
                     /translation="MKASLALLSLLTAFTSHSLKSPAVPPTVVQIQANTNLAIADGAR
                     QQIGNTLFYDPAYVRLTYPGGDVPQERGVCSDVVIRALRSQKVDLQKLVHEDMAKNFA
                     EYPQKWKLKRPDSNIDHRRVPNLETWFSRHNKTRPISKNAGDYQAGDIVSWRLDNGLA
                     HIGVVSDGFARDGTPLVIHNIGAGAQEEDVLFSWRMVGHYRYFVK"
     gene            complement(29163..30068)
                     /gene="yijE"
                     /locus_tag="OQQ19_000683"
     CDS             complement(29163..30068)
                     /gene="yijE"
                     /locus_tag="OQQ19_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine transporter YijE"
                     /protein_id="HCS1802420.1"
                     /translation="MSAAGKSNPLAISGLVVLTLIWSYSWIFMKQVTSYIGAFDFTAL
                     RCIFGALVLFIVLLLRGRGMHPTPFKYTLAIALLQTCGMVGLAQWALVSGGAGKVAIL
                     SYTMPFWVVIFAALFLGERLRRGQYFAILIAAFGLFLVLQPWQLDFSSMKSAMLAILS
                     GVSWGASAIVAKRLYTRHPRVDLLSLTSWQMLYAALVMSVVALLVPQREIDWQPTVFW
                     ALAYSAILATALAWSLWLFVLKNLPASIASLSTLAVPVCGVLFSWWLLGENPGAVEGS
                     GIVLIVLALALVSRKKKEAVSVKSI"
     gene            complement(30162..32342)
                     /gene="katG"
                     /locus_tag="OQQ19_000684"
     CDS             complement(30162..32342)
                     /gene="katG"
                     /locus_tag="OQQ19_000684"
                     /EC_number="1.11.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase/peroxidase HPI"
                     /protein_id="HCS1802421.1"
                     /translation="MSTSDDIHNTTATGKCPFHQGGHDQSAGAGTTTRDWWPNQLRVD
                     LLNQHSNRSNPLGEDFDYRKEFSKLDYYGLKKDLKALLTESQPWWPADWGSYAGLFIR
                     MAWHGAGTYRSIDGRGGAGRGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGQKISWA
                     DLFILAGNVALENSGFRTFGFGAGREDVWEPDLDVNWGDEKAWLTHRHPEALAKAPLG
                     ATEMGLIYVNPEGPDHSGEPLSAAAAIRATFGNMGMNDEETVALIAGGHTLGKTHGAG
                     PTSNVGPDPEAAPIEEQGLGWASTYGSGVGADAITSGLEVVWTQTPTQWSNYFFENLF
                     KYEWVQTRSPAGAIQFEAVDAPEIIPDPFDPSKKRKPTMLVTDLTLRFDPEFEKISRR
                     FLNDPQAFNEAFARAWFKLTHRDMGPKSRYIGPEVPKEDLIWQDPLPQPIYNPTEQDI
                     IDLKFAIADSGLSVSELVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVR
                     ALPVLEKIQKESGKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDI
                     EMFELLEPIADGFRNYRARLDVSTTESLLIDKAQQLTLTAPEMTALVGGMRVLGANFD
                     SSKNGVFTDRVGVLSNDFFVNLLDMRYEWKATDESKELFEGRDRETGEVKYTASRADL
                     VFGSNSVLRAVAEVYASSDAHEKFVKDFVAAWVKVMNLDRFDLL"
     gene            complement(32671..33561)
                     /gene="metF"
                     /locus_tag="OQQ19_000685"
     CDS             complement(32671..33561)
                     /gene="metF"
                     /locus_tag="OQQ19_000685"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HCS1802422.1"
                     /translation="MSFFHASQRDALNQRLAEVQGQINVSFEFFPPRTSEMEQTLWNS
                     IDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTI
                     ARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAK
                     SAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFK
                     QAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYT
                     LNRAEMSYAICHTLGVRPGL"
     gene            complement(33910..36342)
                     /gene="metL"
                     /locus_tag="OQQ19_000686"
     CDS             complement(33910..36342)
                     /gene="metL"
                     /locus_tag="OQQ19_000686"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000110794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase II"
                     /protein_id="HCS1802423.1"
                     /translation="MSVIAQAGAKGRQLHKFGGSSLADVKCYLRVAGIMAEYSQPDDM
                     MVVSAAGSTTNQLINWLKLSQTDRLSAHQVQQTLRRYQCDLISGLLPAEEADSLISAF
                     VSDLERLAALLDSGINDAVYAEVVGHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAE
                     RAAQPQVDEGLSYPLLQQLLVQHPGKRLVVTGFISRNNAGETVLLGRNGSDYSATQIG
                     ALAGVSRVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPV
                     SGSEIDLQLRCSYTPDQGSTRIERVLASGTGARIVTSHDDVCLIEFQVPASQDFKLAH
                     KEIDQILKRAQVRPLAVGVHNDRQLLQFCYTSEVADSALKILDEAGLPGELRLRQGLA
                     LVAMVGAGVTRNPLHCHRFWQQLKGQPVEFTWQSDDGISLVAVLRTGPTESLIQGLHQ
                     SVFRAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLAGVVDSRRSLLSYD
                     GLDASRALAFFNDEAVEQDEESLFLWMRAHPYDDLVVLDVTASQQLADQYLDFASHGF
                     HVISANKLAGASDSNKYRQIHDAFEKTGRHWLYNATVGAGLPINHTVRDLIDSGDTIL
                     SISGIFSGTLSWLFLQFDGSVPFTELVDQAWQQGLTEPDPRDDLSGKDVMRKLVILAR
                     EAGYNIEPDQVRVESLVPAHCEGGSIDHFFENGDELNEQMVQRLEAAREMGLVLRYVA
                     RFDANGKARVGVEAVREDHPLASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGA
                     IQSDINRLAQLL"
     gene            complement(36345..37505)
                     /gene="metB"
                     /locus_tag="OQQ19_000687"
     CDS             complement(36345..37505)
                     /gene="metB"
                     /locus_tag="OQQ19_000687"
                     /EC_number="2.5.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine gamma-synthase"
                     /protein_id="HCS1802424.1"
                     /translation="MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAH
                     DYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYG
                     GSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKIC
                     HLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDV
                     VTELAWWTNNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLY
                     HPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLI
                     SHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANKG"
     gene            37782..38099
                     /gene="metJ"
                     /locus_tag="OQQ19_000688"
     CDS             37782..38099
                     /gene="metJ"
                     /locus_tag="OQQ19_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015855437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="met regulon transcriptional regulator MetJ"
                     /protein_id="HCS1802425.1"
                     /translation="MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRR
                     QVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPET
                     WEY"
     gene            38283..38891
                     /locus_tag="OQQ19_000689"
     CDS             38283..38891
                     /locus_tag="OQQ19_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiX family permuted papain-like enzyme"
                     /protein_id="HCS1802426.1"
                     /translation="MKNRLLILSLLVSVPAFAWQPQTGDIIFQISRSSQSKAIQLATH
                     SDYSHTGMLVIRNKKPYVFEAVGPVKYTPLKQWIAHGEKGKYVVRRVEGGLSVEQQQK
                     LAQTVKRYLGKPYDFSFSWSDDRQYCSEVVWKVYQNALGMRVGEQQKLKEFDLSNPLV
                     QAKLKERYGKNIPLEETVVSPQAVFDAPQLTTVAKEWPLFSW"
     gene            39036..39711
                     /locus_tag="OQQ19_000690"
                     /pseudo
     CDS             39036..39711
                     /locus_tag="OQQ19_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(39883..40155)
                     /locus_tag="OQQ19_000691"
     CDS             complement(39883..40155)
                     /locus_tag="OQQ19_000691"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802427.1"
                     /translation="MELQLSDKGVIKMKAIQCCYFLALVSSNLMAGVMGNDNIFLSNS
                     DSAALYCVAKIFPDGENILIYKVNIINASSKKDVFFMKAQHQPTMT"
     gene            complement(40121..40514)
                     /locus_tag="OQQ19_000692"
                     /pseudo
     CDS             complement(40121..40514)
                     /locus_tag="OQQ19_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001747579.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4329 domain-containing protein"
BASE COUNT         9965 a        11136 c        10076 g         9337 t
ORIGIN      
        1 gcttttctct gttgagattc tcaggagaac cccgctgacc cggcggcgtg tttgccgttg
       61 ttccgtgtca gtggtggcgc attataggga gttattccgg cctgacaaga ggaaatttaa
      121 aataattttc tgaccgcgca acattcaacc aaatcagcct aaaactgcca gtttttcgag
      181 cgtttcgaag ccgtaacgct gtaaaacggg caataattgt tcagcttctg gcgtcattgc
      241 catacaaaag gcaatattcg catcggcaga ttttgcatcc ggggcttcat gttctaacaa
      301 ccaggccgtt cggcgagcaa tcgctgcgcc agaatccact agccgggttc cctctggcag
      361 cacttgtaac agttcttctt gtagtagagg gaaatgggtg caacccaata caacggtatc
      421 tggcggctct ttcattctta accacgggcg taggatacgt tttagtgcat ccagagaaac
      481 atcttcgcca tgtagcttcg cttcagccaa ctcaaccatc tctgccgagc ccagcatttc
      541 tatctggcat tcattagcga aacgcgcgat cagctcatga gtataagaac gtttaactgt
      601 tccgcgggtt gccagtaatc cgacaatgcc atttgccgtc agacgtgcag caggtttaat
      661 cgccggcacg acaccaacaa ccgggaagtc gaacttttcg cgtaatgcag gaagtgaaac
      721 ggtactggca gtgttgcaag cgaccacagc cagcgcaagg ggataacgtt cttgcaccgc
      781 ggtgacaatt gccaccactc gctcaacaat aaacgcttcg cttttttcgc catacgggaa
      841 agcgacgtta tcgaaagcat aaatgtaatg gagatccggt aagagatgcc ggatctcgtc
      901 atagaccgac aacccaccga cgccggagtc aaacaccagc acggtgggac gtggttcaga
      961 aggtgtagct gccagacaag gtgtattccc gtcctgcagt ttggtagcca tagactgtct
     1021 cataatcttt gtcgaacagg ttggctattt taccacgaac tgtcaggtga gaggtgaccg
     1081 gatacgcaac cgcaagatcc cacaagctca caccgcccat tttaacggtt tgataaggat
     1141 aagatgagta atccttatca tagcgagtgc ctaaatactg ataagtaata ccccagtcga
     1201 agtcatacaa ctgccagtcg agctggtatt tcacctgctg tttagcacgg cgtaacaacg
     1261 gcgtgtcggt aatcgcattg cgcgcatcga cataatcata actcacagta tgcgtcagtg
     1321 gtccggtatc aaaattggcg gtcgcctcga cgcccttaat ccgcgctttc ccttcgttgt
     1381 aatatttcag ggtgtgatca tcataatcga tcaagtcact gacatcgtta cgatatccgg
     1441 aaatacgcca gttcacccca gcggttaagc cttcaaacgc gccttcccac tgtttgcttt
     1501 tctccgggtc cagattcgga tttccgtaga agccatacag ttgccccaga tttggtgcct
     1561 tataagatgt cccgtaggaa gcaatgaagc gataaccttc gatgaattcc caaccggcgc
     1621 tggtttgcca ggttccatga cgaccaaact gtgagttatc gtcactgcgt gctgcgcctt
     1681 caaaggtaaa atcgccgact tgttgcagcc cggtcagata gatgccggta ttacgttgat
     1741 catatccatc ctcaacataa cctgtacccg gcgtcgtagt ctgtttctgc cagtcgacac
     1801 ccgcaccaat actaccgtga ccaacgatga cattgtttgc ccactggacg gtgtattgct
     1861 tcatctcatc gagcgtcgcc gacgaatcat aacgaccata atggggatcg tagttgtaat
     1921 ctttgctatg gctatagctg gtaatgagtt gtgatttaat cagttcgccg ttatagcgca
     1981 gcccggcgtc ccaactttgg ctatagagtt tacggatatc gagcaacggt gaaccgggag
     2041 aataatacgc gtcataattg gtacggttat catagccata gccgcgcaca aagccgctcc
     2101 aggcatcagt aaagttatgc tccagcgcgc cataaagcgt tttacttaaa aaaacatcgt
     2161 tatctgtctg cgcttgcgtt ccggtattac cataggcaac aacatcataa ccatgagtat
     2221 gggcataatc gcccaacagc gttacccgtg tcttatcccc cagttgttgc tgcgtagaga
     2281 catcatagtt ctgataacta ttgcttcccc accctgctga aatttccgtt ccgggttcat
     2341 cgcgcgtcgt gatgatattc accaccccgc ctattgcatc ggaaccataa acagcggagc
     2401 gcggcccacg gatatattca acacgctgga caagcgcacg caatagggaa ctggctaagg
     2461 tcggcagaac cactcacccc cgccagattc aggcgtacgc catcaattaa caccaacaca
     2521 tgactggcat ttgtaccgcg aataaaaata gatgagagct gacctgaacc gccgttttgg
     2581 gtgatatcga cgcccggaag acggcgcagc acatcattga ccgaggtcga ctgccagcgg
     2641 tcgatatcct gacgggtcac aacggtggtt ggtgcaagca cagtgctgcg cggctgttca
     2701 aaacggttag cagtaacgac gagagtatcc gggctggtat cctgtgccca agcggaaaag
     2761 gctgtgacag aacacgccgt cagcagcgaa gcttttttaa tcattgtaaa gcatccacaa
     2821 tagaagaagg atgccgcagg tttcatcaat attacgcgat gatgagacgt tggccggcag
     2881 gtcttcgggc ttggaggggt atctaagata ctaagagatg atgacttccc accggatggc
     2941 agtgtccgca taacgcaatc atcgcacctt tccttaccgc tgcgcgtcag ctccagattc
     3001 gcactggatt ccctattaac tcacaggacc ggcaagtgga tgctacaggt tgtaacaagt
     3061 tactgtccag acgtagctca caaataggaa ttcatcaaga tctggacatc tgatgagcaa
     3121 tccctacaat cgccgcgtac tttaattttt caggatacat catgaccccc gaacaccttc
     3181 caacagaaca gtatgaagcg cagttagccg aaaaagtggt acgtttgcaa agtatgatgg
     3241 caccgttttc tgacctggtt ccggaagtgt ttcgctcgcc ggtcagtcat taccggatgc
     3301 gtgcggagtt ccgcatctgg cacgatggcg atgacctgta tcacatcatt ttcgatcaac
     3361 aaaccaaaag ccgtatccgc gtggatagct tccccgccgc cagtgaactt atcaaccagt
     3421 tgatgacggc gatgattgcg ggtgtgcgta ataatcccgt tctgcgccac aagttgttcc
     3481 agattgatta cctcaccacg ctgagtaatc aggcggtggt ttccctgcta taccataaga
     3541 agctggatga tgagtggcgt caggaagcgg aggccctgcg cgatgcactg cgcgcgcaga
     3601 atctgaatgt gcatctgatt ggtcgggcaa cgaaaaccaa aatcgagctg gatcaagatt
     3661 acatcgacga gcgtctgccg gtcgcaggga aagagatgat ctaccgtcag gtagaaaaca
     3721 gctttaccca gccgaacgcg gcgatgaata ttcagatgct ggaatgggcg ctggacgtaa
     3781 ccaaaggctc aaaaggcgat ttactggagc tgtactgcgg caacggtaac ttttcattag
     3841 cgctggcgcg caattttgat cgggtattag ccaccgaaat cgctaagccg tcggttgctg
     3901 ctgcgcaata caacatcgca gctaaccata ttgataacgt acaaattatt cgtatggcgg
     3961 cagaagaatt tactcaggcg atgaatggtg tgcgcgagtt taaccgcctg caagggatcg
     4021 acttaaagag ttatcagtgc gaaaccattt ttgtcgaccc accgcgcagc ggtctggaca
     4081 gtgaaaccga gaaaatggtg caggcgtatc cgtgtatttt gtacatctcc tgtaacccgg
     4141 aaacgttatg caagaatctg gaaacattaa gccagacgca caaggtcgaa cgtctggctc
     4201 tgtttgatca gttcccctac acgcaccata tggagtgcgg cgtattactg accgcgaagt
     4261 aaaacccatg ccggatgcgc cagcatccgg cataataccg attactcagc aacttcctgc
     4321 ttacggttac gcatcttcgc gccaatccag aacaccataa tgacggagag tactgccggg
     4381 aagaagttag agccgatatc cggatattcc gcacgaacta ccgtgctgta cagcagtacg
     4441 ccgagaataa aacaggcagc tgccagaccc ggcaagccta ccggcatagt gcgattaaga
     4501 taacgttgat gcaggcagta aaccgtcagc accagggaaa taatcgggaa tacagaaaat
     4561 ggcacaatgg agctaaacag cgctgcgaaa gtaccattaa tcgataagcc agcaactaac
     4621 gccagcagca gcgtacctct atcttgattt gcttgtttca ttactcgtcc ttcacatttc
     4681 ccggaataat tgcggttttc tcttgttcac ggcgatacca gtaataagcc cctttcgaaa
     4741 tcattcgcag ttgcagtacc agtcgctctt ctaattgccg acgttgttcg acgccgacgt
     4801 ccaacgcctc ggcacccgca ctgaagacaa ttgtcaccat tgcttcggct tgcgcttcag
     4861 taaacgcacg cggcatatgg ttttcgagtt ccagatagtc cgcaagttcc gcaatgaagt
     4921 gctgaatttc acgcgcaacg gcggcacgaa acgcagcgga ggtgccggag cgttcccgca
     4981 ataataaccg gaaggcgtta ggattattac cgatgaactc cataaatgtg gagaccgagg
     5041 tgcggatcac actcccgcct ttggcgatac gctgacgcgc ctggcgcatg agttggcgta
     5101 gcattaaacc gctctcatca accatggtca gacccagttc gtctacgtcg cggaaatgcc
     5161 gataaaaaga ggtgggagca atgcccgctt cacgcgccac ttcacgcaaa ctcaggctgg
     5221 cgaagctgcg ttcagcactt aattggctaa atgcggcttc caccagcgaa cggcgggttt
     5281 tttctttttg ttgcgctctt atgcccatca cgatgtctga atccttgcca aaagtactgc
     5341 tggcactata ccagagaatg aacatactgg attgctccag tattgtgaat gaacggtaac
     5401 gcaataaaac atatttactg gccggttctt ttacgtacag cggaaacctg ccgcttaaac
     5461 ggagagtatc gtcgataaaa atccaataaa acgtcagggc aaaagtaaga aacagacaaa
     5521 gcaaaggccg ctcaggatat agccagataa atgacgggga tcaattggct tacccgcgat
     5581 aaaatgttac cattctgttg cttttatgta taagaacagg taagccctac catgccacat
     5641 tcctacgatt acgatgccat agtaataggt tccggccccg gcggcgaagg cgctgcaatg
     5701 ggcctggtta agcaaggtgc gcgcgtcgca gttatcgagc gttatcaaaa tgttggcggc
     5761 ggttgcaccc actggggcac catcccgtcg aaagctctcc gtcacgccgt cagccgcatt
     5821 atagaattca atcaaaaccc actatacagc gaccattccc gactgctccg ctcttctttt
     5881 gccgatatcc ttaaccatgc cgataacgtg attaatcaac aaacgcgcat gcgtcaggga
     5941 ttttacgaac gtaatcactg tgaaatattg caggggaacg ctcgctttgt tgacgagcat
     6001 acgttggtgc tggattgccc ggacggcagc gtcgaaacac taaccgctga aaaatttgtt
     6061 attgcctgcg gctctcgtcc atatcatcca acagatgttg atttcaccca tccacgcatt
     6121 tacgacagcg actcaattct tagcatgcac cacgaaccgc gccatgtact tatctatggt
     6181 gctggagtga tcggctgtga atatgcgtcg atcttccgcg gtatggatgt aaaagtggat
     6241 ctgatcaaca cccgcgatcg cctgctggca tttctcgatc aagagatgtc agattctctc
     6301 tcctatcact tctggaacag tggcgtagtg attcgtcaca acgaagagta cgagaagatc
     6361 gaaggctgtg acgatggtgt gatcatgcat ttgaagtcgg gtaaaaaact gaaagctgac
     6421 tgcctgctct atgccaacgg tcgcaccggt aataccgatt cgctggcgtt acagaacatt
     6481 gggctggaaa ctgacagccg cggacagctg aaggtcaaca gcatgtatca gaccgcacag
     6541 ccgcacgttt acgcggtggg cgacgtgatt ggttatccga gcctggcatc agcggcctat
     6601 gaccaggggc gcattgccgc gcaggcgctg gtaaaaggcg aagccaccgc acatctgatt
     6661 gaagatatcc ctaccggcat ttacaccatc ccggaaatca gctctgtggg caaaaccgaa
     6721 cagcagctga ccgcaatgaa agtgccatat gaagtgggcc gcgcccagtt taaacatctg
     6781 gcacgcgcac aaatcgtcgg catgaacgtg ggcacgctga aaattttgtt ccatcgggaa
     6841 acaaaagaga ttctgggtat tcactgcttt ggcgagcgcg ctgccgaaat tattcatatc
     6901 ggtcaggcga ttatggaaca gaaaggtggc ggcaacacta ttgagtactt cgtcaacacc
     6961 acctttaact acccgacgat ggcagaagcc tatcgggtag ctgcgctaaa tggcttaaac
     7021 cgcctgtttt aacactttat cgaaatggcc atccattctt gcgcggatgg cctctgccag
     7081 ctgctcatag cggctgcgca gcggtgagcc aggacgataa accaggccaa tcgtgcggcg
     7141 aggttccggc ttaatacacg gcaaataaac aaccccatcg cgtttgcgct ccggcggcac
     7201 agccagcgca ggcagtaaag tgatcccgct acctgccgcc accatgttac gcagtgtctc
     7261 caggctggtc gcgcggaagt gtgtatcttc atccgccccg gcttcaaagc agaaacccat
     7321 tgcctgatcg cgcaaacagt gaccatcttc cagcatcagc agtttttccc ctgccagatc
     7381 ggccatcggt acgcattcgc ggttcgccca cgggtgatct tcatagatag ccagcaacat
     7441 tggctcatca aacaacggca cttcaatgaa tgcttcgctc tctttcacca gcgcgaggat
     7501 cacgcaatcg agtttgccgc tgtccagttg cgccagtaac tggtgggtct gtgcttcatg
     7561 cagatacatt tccagctttg gaaatgtctg gtgcagcatc gggataatat gcggcagcag
     7621 gtacggtcca accgtaggaa tcaaaccaat atgcagcggt ccggacatcg tctcgccctg
     7681 ctggcttgcc atctctttaa ggactttcac ctcacgcagc acggtacgcg cctgatccac
     7741 cagcagcatt cccgcctggg tgaacaacac tttacggctg gtccgctcca gcaacatcac
     7801 gcccagctca tcttccagct tacgaatttg gccgctaagc gtcggctggc taacgtggca
     7861 ggaatctgcc gcacgccgaa aatggcggtg ttcagccaat gccaccaggt actcaagatc
     7921 acgaatattc attatccatc ctccatcgcc acgatagttc atggcgatag gtagaatagc
     7981 aatgaacgat tatccctatc aagcattctg actgataatt gctcacagaa acggagcggc
     8041 acctctttta acccttgaag tcactgcccg tttcgagagt ttctcaactc gaataactaa
     8101 agccaacgtg aacttttgcg gatctccagg atccgctttt ttttgccata aaaaagcccg
     8161 gcgataagcc aggctcaaat ttgtacatat aaatgttctt accccaaccg cgcctgcgca
     8221 aaagcaatcg cttgggccac ctgctgcggt gagacgccgc cttttgccgc acgcttgtcg
     8281 aggcacgatt gtagcgacag aatcggatag acatcttcgc caatcacgtg gctgaatttc
     8341 tgcaactcgt cgagcggcag atcttccagc ggtttgccct gacgaatggc ttccaccacc
     8401 gcttcaccca cgatatggtg cgcctcgcgg aaaggtacgc ctttcgccac caggtaatcc
     8461 gccagttcgg tggcgttggc gtaaccctgc tgagccgctt cctggcaacg tggacgtttc
     8521 acctgaatgc cgtccagcac cagcgccgcc atatgcaggc agtccagcca ggtatcgaac
     8581 gcgtcgaaca gaccttcttt gtcttcctgc atatctttgt tgtaagccag cggcaaacct
     8641 ttcagcgtca tcatcatgcc ggttaacgca ccctgcaccc gaccgcattt accgcgaatc
     8701 agctccagcg catccgggtt tttcttctgc ggcattaatg atgaaccgga agtcacgcgg
     8761 tcagaaagct ccacaaaccc cgcttcgccg gtgttaaaga aaatcagatc ttcagcaaaa
     8821 cgcgacagat gcaccatgcc gatagcggca gccgacagca gttccaacac atggtcacgg
     8881 tcagaaacgc tgtccagact gttacgggtc gccgaagcaa agcccagcca gcctgctaac
     8941 tgttcacggt cgatttcata ggccgttccc gccagcgcgc cacagcctaa tgggctgaca
     9001 tccagacgct taagcgcatc ctgcaaacgg ctttcatcac gcgccagcat ctcaacatag
     9061 gccaggcacc agtgcgcgaa cgtcaccggc tgggcgcgtt gcaggtgagt gtaacctggc
     9121 attaccgcgt cctgattgtt ttgtgcggtt tccaccagcg ccgattgcag ctgccggtta
     9181 gccgtcagta actcgctaac ggtatctttg caccacagtt tcaggtcagt cgctacctga
     9241 tcattacggc tacgcccggt atgcagcttt ttgcctaact ggcccacttt gtcgatcagt
     9301 ttgccttcca cccagctatg gatatcttcg gcgtcgcttt caaggatttg ttgtggcctg
     9361 gcgcgaacat cttccagcaa cacgttcagc gcctcttcca gttgcgcctg ctcttctgcg
     9421 gttaacacgc cgaccgttac cagggctttg gaccaggcca cagagccaac aatatcctgc
     9481 tccgccagac ggtaatcaaa gcgcagtgag tcgttgaatt gtttgaaccg ttgatctgct
     9541 gcctgggtaa aacgcccgcc ccaaagtgcc ataactctgt ttccttattt tgaaattcaa
     9601 tgccggaaag ctgcgcctcc ggctaacaaa acttaagcta aaatccgcgt acccatcggc
     9661 ataccgttaa acagtgccgg aagctgctcc gcatgacgcc aggaggcgat atctaccgga
     9721 cggcccagcg tgcgggccgc atccagcgcc gcgttcactt tcactatcat gccgtcagta
     9781 ataatgccct gctcaatcag ttgttctgct ttcgcggcgg tcatttcggc aatgcgttgc
     9841 cctttgccgt cgagaatgcc gctgacgtcg gagagcaaaa tcagatccgc gcccagcgtt
     9901 gccgccagcg ccgttgccgc ctggtcggca ttgacgttca tcagttgccc ttcgtctgtt
     9961 acgccaatgg agctgaccac cggcagataa ccgttctcca gcaaggagtt gataagctta
    10021 ggcgaacctg gctgcgccag tccaacatga cctaactctt catcaagctg ggtcactttg
    10081 acgctgtcgc catcaccgag aaacaaacct acagccgcaa tctgatgttt cttcgcccat
    10141 gccaacaggg ttttatttgc cgttcccgcc agtgctccgg tgataatgtc tatctgatca
    10201 gcaggcgtca cccgcaggcc gtttttcttt ttcaccggca gattcagccc tttcatcagc
    10261 tcatccacca cgcaaccgcc gccgtgcaca atcaccagcg gacgctgatg tgactcacga
    10321 taattcacca gtgcgctaaa cagacgttcc agcgcctctt cactatccag cagtacgccg
    10381 cccagtttga taattaatgg attcatcatt gcacccttaa ataagagact gcgtttccgc
    10441 atagccgaaa cgaatattgg cgcactgtac cgcttgtgcc gccgcgcctt tcagtaagtt
    10501 gtcttcggtc gccacaataa tcagatgctc gccctgaacg gcaaacccga tatcgcaaaa
    10561 tggcagccca acgacatttt tcagcgccgg aacgcctttg tcatacagcc gcaccagcgg
    10621 tttatgggca tacgcctgct gtaacacttg cgcgacttgc gcctgggtca cacccgattt
    10681 caggcggcag gtaatggttt cgagaatgcc gcgcgggaaa ttgcccagat gtggggtgaa
    10741 gataacgtca gcaccgaggt gtgtggcgat ctctggttga tggcgatgag taaagacgcc
    10801 atacggttgc aggctaactt cacaaaaact atttgaaatc gctgccttac gtcctgcacc
    10861 gctcacgccg ctggtggcgt taatcgccgg ccactgattg aggtcaagaa gatcggcatc
    10921 aatcaacggt ttcagcgcca gctgtgccgc cgtcggataa cagcctggca ccgcaatcaa
    10981 attcgcttct tttaatttat taccgcacca ctccgccaga ccgtaggctg cctgttccag
    11041 cagttccggg tattgatggg taaagccgta atatttttca tagaaggtgg cgtcgttaac
    11101 acgaaacgcg ccggaaaggt cgaacaccac gcagcccgct tcaagaaact gcggcgctaa
    11161 atcgtggcta acttcatggg cggtggcgag aaacactacg tccacccctg ggctaaactc
    11221 gctgatatcc gacatcggct gcaacggcag ctcaacgatg ccttttagct gcggatgcaa
    11281 atcggagatt aactttcccg catcattgct ttgcgctgaa acagtcaaag cggttatgtt
    11341 catatgcgga tggcgattta cataggtcac tagctctgcg ccagcgtagc cgctggcacc
    11401 cacaatcagc gtattcaaca tcggggctat tcaccttctt atgtctggtt gccaggttaa
    11461 acgtaaaaca ttcaccttac ggctggtggg ttttattacg ctcaacgtta gtgtattttt
    11521 attcataaat actgcatgaa tattgatact atcatgacca gaggtgtgtc aacaatgaaa
    11581 aacaaattac cgccatttat cgagatttac cgcgctctga ttgccacacc ttcaataagc
    11641 gctacggaag aggcactcga tcaaagcaat gcagatttaa tcactctgct ggcggactgg
    11701 tttaaagatt tgggcttcaa tgtggaagtg cagcctgttc caggaactcg caacaaattc
    11761 aatatgctgg caagtatcgg acagggggct ggcggcttgt tgctggcggg gcataccgat
    11821 acggtgccat ttgatgacgg tcgctggacg cgcgatccgt ttacactgac ggagcatgac
    11881 ggcaagcttt acggcttagg caccgccgac atgaaaggct tttttgcgtt tatccttgat
    11941 gcgctacgcg atatcgacgt cacgaaactg aaaaaaccgc tctacattct ggcgactgct
    12001 gatgaagaaa ccagtatggc cggagcgcgt tattttgccg aaactaccgc cctgcgcccg
    12061 gattgcgcca tcattggcga accgacgtca ctacaaccgg tacgcgcaca taaaggtcat
    12121 atctctaacg ccatccgtat tcagggccag tcggggcact ccagcgatcc agcacgcgga
    12181 gttaacgcta tcgaactaat gcacgacgcc atcgggcata ttttgcaatt gcgcgataac
    12241 ctgaaagaac gttatcacta cgaagcattt accgtgccat accctacgct caacctcggg
    12301 catattcacg gtggcgacgc ttctaaccgt atttgcgctt gctgtgagtt gcatatggat
    12361 attcgtccgc tgcctggcat gacactcaat gaacttaatg gtttgctcaa cgatgcattg
    12421 gctccggtga tcgaacgctg gccgggtcgt ctgacggtcg acgagctgca tccgccgatc
    12481 cctggctatg aatgcccacc gaatcatcaa ctggttgaag tggttgagaa attgctcgga
    12541 gcaaaaaccg aagtggtgaa ttactgtacc gaagcgccgt ttattcaaac gttatgcccg
    12601 acgctggtgc tcggtccggg ttccatcaat caagctcatc agcctgatga atatctggag
    12661 acgcggttta ttaaacccac ccgtgagttg attatccagg taattcacca tttttgctgg
    12721 cattaaaacg taggccggat aaggcgctcg cgccgcatcc ggcaccgttg ccaaactccg
    12781 gtgccgcaat aatgtcggat gcgatgcttg cgcatcttat ccgacctaca cctttggtgt
    12841 tatgtatggc gattttttaa catttccata agttacgctt atttaaagcg tcgtgaattt
    12901 aatggcgtaa attcctgcta tttattcgtt tgctgaagcg atttcgcagc atttgacgtc
    12961 accgctttta cgtggcttta taaaagacga cgaaaagcaa agcccgagca tattcgcgcc
    13021 aatgcgacgt gaaggataca gggctatcaa acgataagat ggggtgtctg gggtaatatg
    13081 aacgaacaat attccgcatt gcgtagtaat gtcagtatgc tcggcaaagt gctgggagaa
    13141 accatcaagg atgcgttggg agaacacatt cttgaacgcg tagaaactat ccgtaagttg
    13201 tccaaatctt cacgcgctgg caatgatgct aaccgccagg agttactcac caccttacaa
    13261 aatttgtcga acgacgagct gctgcccgtt gcgcgtgcgt ttagtcagtt cctgaacctg
    13321 gccaacaccg ccgagcaata ccacagcatt tcgccgaaag gcgaagctgc cagcaacccg
    13381 gaagtgatcg cccgcaccct gcgtaaactg aaaaaccagc cggaactgag cgaagacacc
    13441 atcaaaaaag cagtggaatc gctgtcgctg gaactggtcc tcacggctca ccctaccgaa
    13501 attacccgtc gtacactgat ccacaaaatg gtggaagtga acgcctgctt aaaacagctc
    13561 gataacaaag atatcgctga ctacgaacac aaccagctga tgcgtcgcct gcgccagtta
    13621 atcgcccagt catggcatac cgatgaaatc cgtaagctgc gtccaagccc ggtagatgaa
    13681 gccaaatggg gctttgccgt agtggaaaac agcctgtggc aaggcgtacc aaattacctg
    13741 cgcgaactga acgaacaact ggaagagaac ctcggctaca aactgcccgt cgaatttgtt
    13801 ccggtccgtt ttacttcgtg gatgggcggc gaccgcgacg gcaacccgaa cgtcactgcc
    13861 gatatcaccc gccacgtcct gctactcagc cgctggaaag ccaccgattt gttcctgaaa
    13921 gatattcagg tgctggtttc tgaactgtcg atggttgaag cgccccctga actgctggcg
    13981 ctggttggcg aagaaggtgc cgcagaaccg tatcgctatc tgatgaaaaa cctgcgttct
    14041 cgcctgatgg cgacacaggc atggctggaa gcgcgcctga aaggcgaaga actgccaaaa
    14101 ccagaaggcc tgctgacaca aaacgaagaa ctgtgggaac cgctctacgc ttgctaccag
    14161 tcacttcagg cgtgtggcat gggtattatc gccaacggcg atctgctcga caccctgcgc
    14221 cgcgtgaaat gtttcggcgt accgctggtc cgtattgata tccgtcagga gagcacccgc
    14281 cataccgaag cgctgggcga gctgacccgc tacctcggta tcggcgacta caaaagctgg
    14341 tcagaggccg acaaacaggc gttcctgatc cgcgaactga actccaaacg tccgcttctg
    14401 ccgcgcaact ggcaaccaag cgccgaaacg cgcgaagtgc tcgatacctg ccaggtgatt
    14461 gccgaagcgc cgcaaggctc cattgccgcc tacgtgatct cgatggcgaa aacgccgtcc
    14521 gacgtactgg ctgtccacct gctgctgaaa gaagcgggta tcgggtttgc gatgccggtt
    14581 gctccgctgt ttgaaaccct cgatgacctg aacaacgcca acgatgtcat gacccagctg
    14641 ctcaatatcg actggtatcg cggcctgatt cagggcaaac agatggtgat gattggctat
    14701 tccgactcag caaaagatgc gggcgtgatg gcagcgtcct gggcgcaata tcaggcacag
    14761 gatgcattaa tcagaacctg cgaaaaagcg ggtattgagc tgacgttgtt ccacggtcgc
    14821 ggcggttcca ttggtcgcgg cggtgcacct gcccatgcgg cactgctgtc acaaccgcca
    14881 ggaagcctga aaggcggcct gcgcgtaacc gaacagggcg agatgatccg ctttaaatat
    14941 ggtctgccag aaatcaccgt cagcagcctg tcgctttata ccggggcgat tctggaagcc
    15001 aacctgctgc caccgccgga gccgaaagag agctggcgtc gcattatgga tgaactgtca
    15061 gtcatctcct gcgatgtcta ccgcggctac gtacgtgaaa acaaagattt tgtgccttac
    15121 ttgcgctccg ctacgccgga acaagaactg ggcaaactgc cgttgggttc acgtccggcg
    15181 aaacgtcgcc caaccggcgg cgtcgagtca ctacgcgcca ttccgtggat cttcgcctgg
    15241 acgcaaaacc gtctgatgct ccccgcctgg ctgggtgcag gtacggcgct gcaaaaagtg
    15301 gtcgaagacg gcaaacagag cgagctggag gctatgtgcc gcgattggcc attcttctcg
    15361 acgcgtctcg gcatgctgga gatggtcttc gccaaagcag acctgtggct ggcggaatac
    15421 tatgaccaac gcctggtaga caaagcactg tggccgttag gtaaagagtt acgcaatctg
    15481 caagaagaag acatcaaagt ggtgctggcg attgccaacg attcccatct gatggccgat
    15541 ctgccgtgga ttgcagagtc tattcagcta cggaatattt acaccgaccc gctgaacgta
    15601 ttgcaggccg agttgctgca ccgctcccgc caggcagaaa aagaaggcca ggaaccggat
    15661 cctcgcgtcg aacaagcgtt aatggtcact attgccggga ttgcggcagg tatgcgtaat
    15721 accggctaat cttcctcttc tgcaaaccct cgtgcttttg cgcgagggtt ttctgaaata
    15781 cttctgttct aacaccctcg ttttcaatat atttctgtct gcattttatt caaattctga
    15841 atataccttc agatatcctt aaggaattgt cgttacattc ggcgatattt ttttcaagac
    15901 aggttcttac tatgcattcc acagaagtcc aggctaaacc cctttttagc tggaaagccc
    15961 tgggttgggc actgctctac ttttggtttt tctctactct gctacaggcc attatttaca
    16021 tcagtggtta tagtggcacc aacggcattc gcgactcgct gttattcagc tcgctgtggt
    16081 tgatcccggt attcctcttt ccgaagcgga ttaaaattat tgccgcagta atcggcgtgg
    16141 tgctatgggc ggcctctctg gcggcgctat gctactacgt catctacggg caggagttct
    16201 cgcagagcgt tctgtttgtg atgttcgaaa ccaacaccaa cgaagccagc gagtatttaa
    16261 gccagtattt cagcctgaaa attgtgctta tcgcgctggc ctatacggcg gtggcagttc
    16321 tgctgtggac acgcctgcgc ccggtctata ttccaaagcc gtggcgttat gttgtctctt
    16381 ttgccctgct ttatggcttg attctgcatc cgatcgccat gaatacgttt atcaaaaaca
    16441 agccgtttga gaaaacgttg gataacctgg cctcgcgtat ggagcctgcc gcaccgtggc
    16501 aattcctgac cggctattat cagtatcgtc agcaactaaa ctcgctaaca aagttactga
    16561 atgaaaataa tgccttgccg ccactggcta atttcaaaga tgaatcgggt aacgaaccgc
    16621 gcactttagt gctggtgatt ggcgagtcga cccagcgcgg acgcatgagt ctgtacggtt
    16681 atccgcgtga aaccacgccg gagctggatg cgctgcataa aaccgatccg aatctgaccg
    16741 tgtttaataa cgtagttacg tctcgtccgt acaccattga aatcctgcaa caggcgctga
    16801 cctttgccaa tgaaaagaac ccggatctgt atctgacgca gccgtcgctg atgaacatga
    16861 tgaaacaggc gggttataaa accttctgga tcaccaacca gcagacgatg accgcccgca
    16921 ataccatgct gacggtattt tcgcgccaga ccgacaagca gtactacatg aaccagcaac
    16981 gtacgcagag tgcgcgtgaa tacgacacca acgtgctgaa gccgttccag gatgtgctga
    17041 atgaccctgc gccgaagaaa ctgatcatcg ttcatctgct gggtacgcat atcaaataca
    17101 aataccgcta cccggaaaat cagggcaagt ttgatggcaa taccgatcat gttccgccag
    17161 gattaagcgc agaagagctg gaatcatata acgattatga caacgctaac ttgtataacg
    17221 atcatgtggt tgccagcctg attaaagact ttaaagcggc agacccgaac ggattcctgg
    17281 tttacttctc tgaccacggt gaagaggttt acgacacgcc gccgcacaaa actcaggggc
    17341 gtaacgaaga caacccgacg cgccacatgt acaccattcc gttcctgctg tggacgtcgg
    17401 aaaaatggca agcgactcat ccccgtgatt tctcacagga tgtcgatcgt aaatacagcc
    17461 tggcggaact gatccacacc tggtcagatt tggcgggctt atcttacgac ggttacgatc
    17521 caacccgttc agtggtgaat ccgcagttca aagaaactac ccgctggatt ggtaacccgt
    17581 acaagaaaaa cgcgctgatc gattacgaca ctctgccgta tggcgaccag gtaggtaatc
    17641 agtaattatc agccaggcgc tatttgccgg atgcgacgct tgacgcgtct tatccggcct
    17701 acagatcgcg gcggtaggct ggataaggcg tttacgccac atccggcaat acaactgccg
    17761 caatgtttac atcgaactcc cctcaggcca cacttttcag gtggcctttt ttaataatgc
    17821 cagttactgt tttcccgtct acatacctaa gggaataaca tgtatcacga catcagctat
    17881 ctgctctccc gcctgatcaa cggcccgctg tccctgcgcc agatttactt tgccagcagt
    17941 aacggcccgg tgcccgatct tgcgtatcag gtcgattttc cacggctgga aattgtgctg
    18001 gaaggtgagt ttgttgatac cggcgctgga gcaacgttag ttcccggcga tgtgctgtac
    18061 gttgccgctg gtggctggaa tttcccacaa tggaaaacac ccactaccac ctttagcgtg
    18121 ctgtttggca aacagcaact cggcttcagc gtcgtgcaat gggatggcaa acaatatcaa
    18181 aatctggcga agcaacacgt cgcccgacgc ggcccacgta taggttcttt tctgctacaa
    18241 acgctcaatg aaatgcaaat gcagccgcag gagcagcaaa cggcaaggct tatcgtagcc
    18301 agcctgctta gccactgccg cgatttgctc ggcagccaaa tccagaccgc ctcacgcagc
    18361 caggcactat ttgaagctat tcgcgattat atcgacgaac gctatgcctc cgcgcttacc
    18421 cgcgaatctg tcgcacaggc attctatatt tcaccaaact atctctcgca cctgtttcaa
    18481 aaaacggggg ccattggttt taacgaatac ctgaatcaca cgcgactgga gcacgctaag
    18541 acgttattga aaggctatga cctgaaggta aaagaagtgg cgcacgcctg cggctttgtc
    18601 gacagcaact acttctgccg tctgtttcgt aaaaacaccg aacgctcgcc gtcggaatat
    18661 cgccgacagt accacagcca actgacagaa aaaccgacta ctccagaata agatgggttt
    18721 gctgcggcgc agaaagcact ttgcgcaccg cgctcattac ccgctgcggc tcacgcagga
    18781 atgcgtagat gctgcattgc acatagcggc aatgttcaaa tcgctcggca ccggcaagct
    18841 cgatatccgt aatcaacaga gcaacatccg cccgacggat atcctcgtcc gctaaacgat
    18901 tctccgttcc cagcgcgccc tgagtttcaa tgctgacgcc ccacttctct aactggcaca
    18961 acttttccag ccgttccgcc gccatataag tatgcgccac gccgcttacg caggcggtta
    19021 ctgccaccag gtatgccatt ttaacctccc acggtaacct gaaatccggc ccgttctgcc
    19081 atttcgcgca tcgttgccac atcggctgat gacggcgcag caacatcctt catcgaccat
    19141 gttttcccca gcaggcggta tttcggctcg ccgtactgat gaaacggcaa cagatggatc
    19201 tgcctgatat tcagcgggat cagcacgtcc agcgcctgct gcatattctc ccggctgagt
    19261 gtgaaaccgg ggatcagcgg caaacgcggg atcacgttga caccctcact caccagcaaa
    19321 cgcaggttct ccagtacgcg tggcaggttc atcttcacca catcccgcgc ctgagtcgcg
    19381 tccataattt ttaaatcgaa caacacttca tcgcacaatt tcgccagcgg taacagcttg
    19441 ctggctggtg cgtctccggc agtttcaatg gcacatgaga caccccacag ccgcagtcgc
    19501 tgtaaaaaac gggtagcaaa ctccgcctgc attaacactt cgccgccaga aagcgtgacg
    19561 ccgccgccgg acgtgcgaaa aaaaatgtca tctttcatca cttcccgttc cagagcgtca
    19621 aggctgatat cgcgaccaat ccgttcaaac gccccggagg ggcattcatc cgcatcacgc
    19681 aaacatttcg cacagtgcag acatttcgcc tctctgcgta ccgtctggat tttgccggag
    19741 atcgactccg gattagcaca ccacgggcaa agatgcggac agcctttaaa aaagaccacc
    19801 gtacgaatgc cctcgccgtc attcagtgaa taacgctgaa tgttgaaaat gcgcgccaca
    19861 tcattgaggc gcgtttccac aacgttacag ctgatgcgct gtccggcgga tgatgtcatc
    19921 ctggatctcc ttcgacagtt cgacaaagaa ggcgctgtat ccggcaacgc gcaccaccag
    19981 cccggcataa tcttgtgggc gctgttgcgc ttcccacaac gtgtcggcgt tcaccacgtt
    20041 aaactgaata tgctgcaact taagctgggt aaacgcccgt aagaagtcgg ccagtttgcg
    20101 taatcccgct tcaccttcca gggtcgccgg agtgaatttc acgttcagca acgtaccgtt
    20161 agacagcagc gtattatcga gcttactgac tgacttcagt accgctgttg gcccttgttc
    20221 gtcctggccc agcataggtg acaagccgcc gtctgccagc tgttctccgg caaaacgacc
    20281 gtctggcgtc gcgccaacca ccgatcccaa cgggacgtga gcagaaacgg tatacgatcc
    20341 cggcgtgaag taaccaccgc gcgggttctg gtatttttcc acttctttgc agtagtggcg
    20401 caacagttcg gcgctaatgt tatccacctc gtcgatatcg ttaccatatt tctcaaagcg
    20461 gttaattaag cgagcgcgga ctttttcgcc ttctggcgtt gcaaagttgg cttttaatac
    20521 cgacagcaat tcgtcaaaac ttaaacgctg ttgctcaaaa accatccctt tcaacgcatg
    20581 gagagaatcg ctcaggttgg cgataccgat cccctgtacg ccggagaagt tataacgcgc
    20641 gccgccatcg gtaatatcgc gacctttttc cagacaatcg ctgataaaag acgagagcag
    20701 cggtacaggt gcccagtcgc gatggccgat atcacaaata ttgctgccct caaccatcag
    20761 ggtgatgtag tggctgatct tggcgcggat ctgctccagt aaaccttcat aagtcagcgc
    20821 agcattgcct tcattttcat gcaggcagat ttccatcact ttcagcagat taaacatcgc
    20881 gatgtcatgc aagccgtagg ttctgccggg aatagataat tccacacagc ccactacgga
    20941 atagtcgcgc gcatcttcca gcgaaacgcc acggttgagg aacgctggta ccaccacttc
    21001 atcgttaaag atttgcggaa taccggtgcc gaggcgaatg gtttcggcgg ttttcatcag
    21061 gaatggcgtg tcgatcaagg cgttagtgcg cacgccgagg ttcggttgcg gtaattgcac
    21121 gctttgatag gcgtcaaggc aaaggaacga aagcacgttc accgcgctac gtccgttctc
    21181 ggttaacccg ccgagcagtg cggtatagcc ggtcgggaaa cctgcgaaat aacgcgcgct
    21241 gctggtggag cgcaacagca cgatgtcgtt gcatttcacc cataaagatt cgagcagttc
    21301 tttcaggaac gccggatctt cgccctgggt taaagatgcc tgatagaacg gcaacatata
    21361 ctggtcgaag cgccctaaag acagcgaact ggcgttggat tcgtattgca gaatgatgtt
    21421 catgtaccag aataactggc acgcctgcca gaacgtctgc ggcttatgtt cggcgttatg
    21481 gcgagagatc tccgcaatag tcagcagttc ttcgcgacgc tgggcatctg tgcagtttgc
    21541 cgccatcgtt tccgccagta cagcgtaacg caaaatgtgt ttctgcgagg cttccagcag
    21601 taacagcgct gcctgataaa agtgattctc cggctgttgc tgacaatgtt gctgcatctg
    21661 tgccaccaac tcccccagcc cgtgattcaa caggcgtggg taatcaataa taatgtgccc
    21721 ctggccttta tccgtctggt taatgctgaa aatctgcgtg ctggtcgcgg cttttacttc
    21781 atccgtcatc tgcccgttga tgaaatcttt catcgaacgt ttttcccagt acgggaacaa
    21841 ctcttcacga tagatacgtt tatcttcttc gctgatagca aagcggtcct gcggacgcgt
    21901 cgggaattga tccagctctt tcagcagcca gtaagggtcc atttccggcg acataatccc
    21961 ggcgcgcggt tttacggtgc ggttaccggc aatcagttct tcatcacgaa tcgaaatttc
    22021 aacatgttca aggatatacg ctgttgcttt cgcccggcgc aatatcaccg gttcgccttc
    22081 ggtttgccga tggctggcgg tataaagcag cgcccgctcc agcgagattt cacgggtatt
    22141 ggcaaacagt gcagttttga ggcgagagat acgattcgtc atgaggaact cctgtgggaa
    22201 agcgaacccg cccttgcgag cgggagaaga acttaagcgg tttgcgccag gtgagcttca
    22261 attttgctca taatggcgtc agcacgtttt actgcatcgc tgatgttgac gcgcacgatg
    22321 gtcttgccag caaaacgctc ttcaaacttg atgccgatat ctttggtcag aatcaccata
    22381 tcagcgctcg ccacatcttc cgcagtcagt tcattttcca gaccaattga cccctgggtt
    22441 tctactttca cttcccagcc tttcgctttc gcggcacttt cccgcgcctc tgctgccata
    22501 taggtatggg caacacctga aggacatgcg gttactgcaa taattttcgt catggctcgt
    22561 tcctcaatta attaatttca aaatccaaat ccaggtcgtc ttctttttca tcagtcgaag
    22621 acccattttt acgcgccaga cttttcagca cgttcacaca aacagccgtc accactgctc
    22681 cgacagccac tgctgcgata taacccagct tgccttcaac caccggcagc acaatcagac
    22741 caccccagcc tgcatagcac tgcgcaccga ccagcgccgc agttactgca ccacaaactg
    22801 aaccgaccat gatggaagga atgacacgca gcggatcggc agcggcgaaa ggaatcgccc
    22861 cttcagtaac gccaacacag cccatcacca gtgccgcttt gccggtttcg cgctcttctg
    22921 cggagaaatt tttacgacca atcagcgtcg ccagccccat ccccagcggc gggatacaaa
    22981 tacccacggc agcgatgacc accacggtat aaacaccctg agcaacgcaa atcagcatga
    23041 aggcataggc tactttgtta accggaccgc ccatatcgaa cgccagcatc agacccatga
    23101 tcaccgccag cataacaatg ctgccctgct gcatcccctg aagccactga gtcaggctgt
    23161 tggtcaacgc ccctacaggc tcgcccaagc cccacatcat gatgcctgcg gtaatcagtg
    23221 tgccgacgat aggaataatg aagataggca tcaccgagcg cagaacttta tgcaccggaa
    23281 ttttcttcag gtaatgcacc acgatgccgc cgataatccc ggcgatcagt gcaccaaaga
    23341 agcccgcacc aaagctgtta ccaacccagg caccgatagc gcacggagcc agcgcagaac
    23401 gctctgcaat ggagtaacca atgtaagcgg cgaggaaagg caccatcagc gtcaaacctg
    23461 caacgccgat atcaaacagt tttttcaaat tcggatcggc tacggcatcc ggcactgcgc
    23521 ctttgccata caacatgacg gaaaccgcca gcaaaatacc gcccgatacc acgaagggaa
    23581 tcatgtgtga aacgcccgtc attaaatgac gacgggtatt tttcaggatc tgcaccaact
    23641 cattcataag ctgctcccgg gcttgcgaaa gcccatgtcc atatttttga tggaggaaac
    23701 aataggcaat cgcaggcgga gcaaacagtg gataaaaagg ccatttactg gacttttgta
    23761 atatcagtac aaaaatgcga tccgcctcat aacttgcgat aaaccggaag catgccgcaa
    23821 aacggcgtct tgtgagacgc gtcgcaaatt gacggttaca ttacatttgt ccagcttttg
    23881 gcagatttgt cacatggcag gccgttgccg tgcgctctta tcctgtaaac agaaaaccgt
    23941 accgggagag aggcaatggc cctgattgtg gaatttattt gtgagctacc taacggcgta
    24001 catgcgcgtc cggcaagcca cgttgaaacg ctgtgtaata ctttttcatc acaaattgag
    24061 tggcataacc tgcgcactga ccgcaagggc aacgccaaaa gcgcccttgc gctgattggc
    24121 accgatacgc tggcgggcga taactgccag ttactgattt ccggggccga cgaacaggaa
    24181 gcgcaccagc gtttaagcca atggctgcgc gatgaattcc cccactgcga tgcgccgctg
    24241 gcggaagtta aatctgacga actggaacca ctgccggttt cactgaccaa tctgaatccg
    24301 caaattatcc gcgcccgcac cgtgtgcagc ggtagtgcag gcggcattct gacgccgatc
    24361 tcttctttag atctcaatgc gctgagtaat cttcccgcag ccaaagacgt tgacgccgag
    24421 caatccgcac tggaaaatgg cctgacgctg gtactgaaaa acattgagtt tcgtctgctg
    24481 gatagcgacg gtgctaccag cgcgatactg gaagctcacc gatccctggc tggcgataca
    24541 tctttacgtc agcacttact gacaggcgtc agcgagggat taagctgtgc cgaagcgatt
    24601 gtcgccagtg cgaatcactt ttgcgaagag ttcgcccgtt ccagcagcag ctacctgcaa
    24661 gaacgtgccc tggacgtacg cgacgtctgc ttccagttac tccagcaaat ctacggtgag
    24721 caacgcttcc cggcaccggg caaactgacg cagcccgcca tttgtatggc tgatgaactg
    24781 actcccagcc agttcctcga actggataaa aatcacctca aaggtctgtt actgaaaagt
    24841 ggcggcacca cctcacatac cgtaattctt gcccgttcgt tcaacattcc gacactggtt
    24901 ggtgtagata ttgatgccct tactccgtgg cagcatcaaa cgatttatat cgacggcaac
    24961 gccggggcga ttgtggttga gccaggggaa gccgtggccc gttattatca gcaagaagcc
    25021 cgcgtacagg acgcccttcg tgagcaacag cgtgtctggc tgacccaaca agcccgtacc
    25081 gctgacggta tccgcattga aattgccgct aacatcgctc actccgtgga agcgcaggcc
    25141 gcattcggca atggtgcgga aggcgttggt ttgttccgca ctgaaatgct ctatatggat
    25201 cgcaccagtg caccgggcga aagcgagctg tacaacattt tttgtcaggc gctggagtct
    25261 gccaacggac gcagcattat tgtgcgcact atggacattg gcggcgacaa acccgttgat
    25321 tatctgaaca ttccggcaga agctaacccg ttcctcggtt atcgcgctgt gcgtatttat
    25381 gaagaatacg cctcgctgtt caccacacaa ctacggtcga tcctgcgcgc ctccgctcac
    25441 ggcagcctga aaatcatgat cccgatgatc tcctcaatgg aagagatctt atgggtgaaa
    25501 gaaaaactgg cggaagccaa acagcaactg cgtaacgaac acattccgtt tgatgagaag
    25561 atccagcttg gcattatgct ggaagtaccg tcggtgatgt tcatcatcga tcaatgctgc
    25621 gaagagattg atttctttag tattggtagt aatgacctga cgcaatatct gctggcagtg
    25681 gatcgcgata acgctaaggt tactcgtcac tacaacagcc tgaatccggc attcttgcgg
    25741 gcgctcgatt acgccgtgca ggcggtgcat cgccagggca aatggattgg tctgtgcggt
    25801 gagctgggag cgaaaggttc cgtgctgccg ttgctggtcg gcttagggct ggatgaactc
    25861 agcatgagcg caccatcaat tccggcggcg aaagcgcgga tgacgcaact tgatagccgt
    25921 gagtgccgca agttgctcaa ccaggcaatg gcctgccgta cttcgctgga agtggaacac
    25981 ctgctggcgc aattccgcat gacccaacag gacgcaccgc tggtcaccgc cgagtgcatc
    26041 acgctggaaa gtgactggcg cagcaaagaa gaagtgctca aaggcatgac cgataacctg
    26101 ctgctggcgg gccgctgccg ctatccgcgt aaactggaag ccgacttatg ggcgcgcgag
    26161 gccgttttct ctaccggtct gggctttagt tttgccattc cacacagcaa atcagaacac
    26221 attgagcaat ccaccatcag cgtggcgcgt ctgcaagcgc cggtgcgctg gggcgatgat
    26281 gaagcgcaat tcatcattat gttaaccctg aacaaacacg ctgcgggcga tcagcacatg
    26341 cgcattttct ctcgcctcgc tcgccgcatc atgcacgaag aattccgtaa cgcgctggtt
    26401 aacgccgcct ctgccgacgc tatcgccagc ctgctgcaac atgaactgga actgtaaaag
    26461 gaaacatcat ggaactgtat ctggacaccg ctaacgtcgc agaagtcgaa cgtctggcac
    26521 gcatattccc cattgccggg gtgacaacta acccgagcat tatcgctgcc agcaaggagt
    26581 ccatctggga agttctgccg cgtctgcaaa aagcgattgg tgatgagggc attctgtttg
    26641 ctcagactat gagtcgtgac gcgcagggta tggtggaaga agcgaagcgc ctgcgcgacg
    26701 ccattccggg cattgtggtg aaaatcccgg tgacttccga aggtctggcc gccattaaga
    26761 tgctgaaaaa agagggtatt actacgcttg gcaccgcagt gtacagtgct gcacaagggt
    26821 tactggccgc gctggcaggg gcaaaatacg ttgctccgta tgttaaccgc gtagatgccc
    26881 agggcgggga cggcattcgt acggttcagg agctgcaagc gctgttagaa atgcacgcac
    26941 cagaaagcat ggtgctggcg gccagcttta aaacgccgcg tcaggcgctg gactgtttac
    27001 tggcaggatg tgaatccatc accctgccct tagatgtagc gcaacaaatg ctcaacaccc
    27061 ctgcggtaga gtcagctata gagaagttcg aacacgactg gaatgccgca tttggcacta
    27121 ctcatctcta aaggagcaat tatggaccgc attattcaat caccgggtaa atacatccag
    27181 ggcgctgatg tgattaatcg tctgggcgaa tacctgaagc cgctggcaga acgctggtta
    27241 gtggtgggtg acaaatttgt tttaggtttt gctcaatcca ctgtcgagaa aagctttaaa
    27301 gatgctggac tggtagtaga aattgcgccg tttggcggtg aatgttcgca aaatgagatc
    27361 gatcgtctgc gtggcatcgc ggagactgcg cagtgtggcg caattctcgg tatcggtggc
    27421 ggaaaaaccc tcgatactgc caaagcactg gcacatttca tgggtgttcc ggtagcgatc
    27481 gcaccgacta tcgcctctac cgatgcaccg tgcagcgcat tgtctgttat ctacaccgat
    27541 gagggtgagt ttgaccgcta tctactgttg ccaaataacc cgaatatggt cattgtcgac
    27601 accaaaatcg tcgctggcgc tcctgcacgt ctgttagcgg cgggtatcgg cgatgcgctg
    27661 gcaacctggt ttgaagcacg cgcctgttcc cgtagcggcg ctaccactat ggcgggcggc
    27721 aagtgcaccc aggcggcgct ggcactggca gaactgtgct acaacactct gctggaagaa
    27781 ggcgaaaaag cgatgcttgc cgccgaacag catgtagtaa cccctgcgct ggaacgcgtg
    27841 attgaagcga acacctattt aagcggtgtt ggttttgaaa gcggcggact ggcggcggct
    27901 catgcggtgc ataacggcct gaccgctatc ccggacgcgc atcactatta tcacggtgaa
    27961 aaagtggcat tcggtacgct gacgcagctg gtactggaaa acgcgccggt tgaggaaatc
    28021 gaaaccgtag ctgcatttag ccatgcggta ggtttgccaa taactctcgc tcaactggat
    28081 attaaagaag atgtcccggc gaaaatgcga attgtggcag aagcggcatg tgcagaaggt
    28141 gaaaccatcc acaacatgcc tggcggcgcg acgccagatc aggtttacgc cactctgctg
    28201 gtagccgacc agtacggtca gcgtttcctg caagagtggg aataacctac tccaaactcc
    28261 cggcttgtcc gggagtttga acgcaaaatt gcctgatgcg ctacgcttat caggcctacg
    28321 caatctctgc aatatattga atttgcgtgc tttttaggcc agataaggcg ttcacgccgc
    28381 atccggcact ctgtgccagt aatctgaaac tcctacgttg ttcaggagtt ttttatccgc
    28441 ttctggacat tttctctaca gaacaatcgt tagcccggaa ggtcgaatct gtgactctta
    28501 ttttcacgga cgaaccagat gaaagcttca ctggcgctgc tcagcctgct aacggcattt
    28561 accagccact ccttaaaatc tcccgccgtt ccaccaaccg tggtacaaat ccaggccaat
    28621 accaaccttg ccatcgcaga cggtgccaga cagcaaatcg gcaacacgct attttacgat
    28681 ccggcgtatg tgcggcttac ctatcctggc ggtgatgtcc cgcaagaacg cggtgtatgt
    28741 tccgatgtgg tgatccgtgc attgcgcagc cagaaggtcg atttgcagaa actggttcac
    28801 gaagatatgg cgaagaattt tgccgagtac ccgcaaaaat ggaagttaaa gcgcccggac
    28861 agcaacatcg atcaccgtcg ggtgcctaat ctggaaacct ggtttagccg ccacaacaaa
    28921 acacgcccca tcagtaaaaa tgccggtgac tatcaagcgg gcgatattgt ctcctggcga
    28981 ttagataacg ggctggcgca tattggggtg gtgtcagatg gcttcgcccg cgacggtacg
    29041 ccactggtga tacataacat tggcgcaggc gcgcaggaag aagatgtgct gtttagctgg
    29101 cggatggtgg ggcattatcg ttattttgtt aaataagcga tcgccccaca tgaagaaaaa
    29161 attcagatgc tttttacact gacagcttct tttttcttac ggctcaccag cgccagtgcc
    29221 agcacaatca gcacaatacc gctaccttca acggcccccg gattctcacc gagcagccac
    29281 caggaaaaga gtacgccgca aacgggaacg gccagcgtgc ttaagctggc aatactggca
    29341 ggcaagtttt tcaatacaaa caaccataag ctccacgcca gcgccgtcgc cagaatcgca
    29401 ctgtaggcca gcgcccagaa cacggtgggc tgccagtcaa tttcacgttg cggcaccagt
    29461 aaagcgacca cactcatcac cagcgccgca tagagcatct gccaggatgt taacgataat
    29521 aaatccacgc gcggatgacg ggtgtatagg cgtttagcaa caatcgcgct cgccccccaa
    29581 ctaacaccgg agaggattgc cagcatggca cttttcatcg aagagaaatc gagttgccac
    29641 ggctgcaaca ccaaaaataa gccgaaagcg gcaatcagaa tcgcgaaata ttgcccacgt
    29701 cgcaggcgtt caccgagaaa caacgcggcg aaaatcacca cccagaacgg catggtatag
    29761 ctcaggatcg ccaccttccc cgcacctccg ctgaccaacg cccactgcgc cagaccaacc
    29821 atcccgcagg tttgtaacag ggcaatggct aaggtgtatt taaacggcgt cgggtgcatt
    29881 ccgcgaccac gtaataaaag gacgatgaat aaaacgagag cgccgaaaat gcagcgtaag
    29941 gcggtaaagt cgaaggcacc gatgtaactg gtgacttgct tcatgaaaat ccagctataa
    30001 ctccagataa gtgtgagcac aaccaggcca ctgattgcca gtgggttgct ctttcctgcg
    30061 gcagacatga gagatccagt gtgtagtttt cctgtggaca ctatacgccg gtaaagaaac
    30121 ttcagcgact gcctgaaaga cagtcactga agaaggtcag attacagcag gtcgaaacgg
    30181 tcgaggttca tcactttcac ccatgccgct acgaagtctt taacaaactt ctcgtgggca
    30241 tcgctgctgg cgtaaacttc cgctaccgca cgcaggacag agttagaacc aaataccaga
    30301 tccgcacggc tggctgtgta tttcacttcg ccggtttcgc ggtcacgtcc ttcgaacagc
    30361 tctttcgatt cgtcagtcgc tttccactcg taacgcatat ccagcaagtt cacgaagaag
    30421 tcattgctca atacgccaac gcggtcagtg aagacgccgt ttttgctgct atcgaagttg
    30481 gcacccagta cacgcatccc gcccaccagc gcagtcattt ccggcgcggt cagcgtcagt
    30541 tgctgtgctt tgtcgatcag cagtgactcg gtggtggaaa cgtccagacg agcgcgatag
    30601 ttacggaaac cgtcagcaat tggctccagc agctcaaaca tctcaatgtc agtctgatcc
    30661 tgacgcgcat caacgcgacc cggcgcaaac ggtacatgaa tgctcaaacc tgcggcgctt
    30721 gcggctttct caacaccaac cacaccagcc agcacgatga tatccgccag cgaggcttta
    30781 ccagactctt tctggatttt ctccagaaca ggcagagcac gaacggctgc ggcgttcaca
    30841 tcccagtcgc gctgcggcat taatgccaga cgcgcaccgt tggcaccacc gcgtttgtcg
    30901 ccaccacgga aggtagaagc agatgcccag gccaccgata ccagctcact aacagacaga
    30961 ccagaatccg caatcgcgaa tttcagatcg ataatgtcct gctcggtcgg gttgtagatc
    31021 ggctgcggca gcggatcttg ccagatcaga tcttctttcg gcacttccgg cccgatgtag
    31081 cgagatttcg gccccatatc cctgtgcgtc agtttgaacc aggcacgggc aaaggcttcg
    31141 ttgaacgcct gcggatcgtt gaggaaacga cgagagatct tctcgaactc aggatcaaaa
    31201 cgcagcgtca ggtcggtcac cagcattgtc ggtttacgtt tcttcgacgg atcgaacgga
    31261 tccgggataa tttccggtgc gtctaccgct tcgaactgga ttgctccagc cggactgcgg
    31321 gtctgtaccc actcatattt gaacaggttc tcgaagaaat agttgctcca ctgggtcggc
    31381 gtctgggtcc agacaacttc cagaccagag gtaatggcat ctgcgccaac gccgctgccg
    31441 taagtgctcg cccagcctaa accttgttct tcaatcggtg cagcttctgg atcaggacct
    31501 acatttgatg tcggaccggc accgtgagtt ttacccagcg tatgaccacc cgcaatcagc
    31561 gccacggttt cttcgtcgtt catgcccatg ttgccgaagg tcgcacggat agctgctgcc
    31621 gcagaaagcg gttcgccgct gtgatccggg ccttccgggt taacgtaaat cagacccatc
    31681 tcggttgcac ccagcggtgc tttcgccagc gcttccggat gacggtgagt cagccaggct
    31741 ttttcatcac cccagttaac atccagatcc ggttcccaga cgtcttcacg accggcacca
    31801 aaaccgaagg tacggaagcc ggagttttcc agcgccacgt tacctgcgag gataaacagg
    31861 tcggcccagg agattttctg accatatttc tgtttgattg gccacaacag gcgacgcgct
    31921 ttatcaaggc ttacgttatc cggccaggag ttcagcggtg caaaacgttg ctgaccacga
    31981 cccgcgccgc cgcgtccatc gattgaacgg taagtacctg cgccgtgcca ggccatacga
    32041 ataaacagac cggcgtagct gccccagtcg gctggccacc acggctgaga ttctgtcagc
    32101 agggctttca gatctttttt caggccgtag taatctaatt tgctgaattc tttgcggtag
    32161 tcaaagtcct cacccagcgg gttagaacga ttagaatgtt ggtttaacag gtcaacacgg
    32221 agttgatttg gccaccagtc gcgagtggtt gtgcccgccc ccgcgctctg gtcgtgaccg
    32281 ccctgatgga acgggcattt gccagtggct gtcgtgttat gaatatcgtc tgacgtgctc
    32341 atcaatgtgc tcccctctac agtgttaccg ttacgataca cagcgttaga gagaagttat
    32401 aattgaatta atccacggat gcgatagttg agatcttaca tattgttggt taaagagatg
    32461 taggtcaaat tgatcgtaat taagcttttt tgattatgtc cgaattcgga caaatgcttt
    32521 ataaaaaagg gttttagctt catatccttc aagtaatgag ggagaaaaca aggctgacaa
    32581 ccttattttc ccgccctcat ttcgaggcag cattttgtgc tctgtttaaa atttgtgatc
    32641 actgtgtgat tttcacaaaa gccacactat ttataaacca ggtcgaacac ccagcgtatg
    32701 gcaaatcgcg taactcattt cagcgcggtt aagcgtatag aagtggaaat ctttcactcc
    32761 ttcacggctt aaaatcttca ccatatccat ggcaatattc gcgcccacca gtttgcgggt
    32821 ttcggcatca tcatccaggc cgtcgaacat ttgcgccatc cacgccggaa tacgcacgtt
    32881 ggtcatatcg gcaaatttct tcgcctgttt aaagttagat accggcaaaa ttcccggaat
    32941 aatttccaca tcaatgcccg ccgatacaca gcggtcacga aaacgcaggt agctttcgac
    33001 atcgaagaag aactgagtaa tcgcgcggtt ggctccggca tcgactttgc gtttcagatt
    33061 aagcaaatcc gcctgagcgc tttttgcttc cgggtgaact tccggatacg ccgccacgga
    33121 gatatcgaaa tctgccactt cttttaatag cgtcaccagg tcagaagcat acatttctgg
    33181 cttaccactt cccggcggca gatcgccacg cagcgccacg atatgacgaa taccgttatt
    33241 ccagtagtcg cgtgcaatgg tgcgcaactc gtcgggcgtc gcatcaatgc aagtaagatg
    33301 cggtgccgct tccagaccag tgcgatcttt aatgccttta ataatgctgt gcgtacggtc
    33361 gcgctcgccg gagttcgcgc cataggtcac cgatacaaac ttcggtttca ggctgctaag
    33421 gcgatcgatg gagttccaca gggtctgctc catttcactg gtacgcggcg ggaaaaactc
    33481 gaacgaaacg ttaatctgcc cctggacttc tgccaggcgc tgattcaggg catcccgctg
    33541 gctggcgtga aaaaagctca taccttacct catcaatcgc ttgtagttat atgttgtgtt
    33601 gtgcacatct atccgtttag acgtccagat gtaaagatga aggaaaagcc gaagggcgtc
    33661 aaccgaaaaa tgaccaatga tggtgaggaa aaatcaggga agatgaaaaa acttcaggat
    33721 ggtaagaaaa agaaaatccg gtatgcaaag caaaccggac tgcaaatata aactaaccat
    33781 gtacttattg cttcttgccg gattcgtcgt aaacgcttaa tccggcctaa tcctatgata
    33841 attcaatata tttcattaga aaccataaac ccgaaaacat gagtaccggg cattattaaa
    33901 tttctgaaat tacaacaact gtgccagccg gttgatatcc gactgaatcg ccccggcggt
    33961 gacgtcgcgc cccgcgccag gcccacggat caccagcggg ttgtcgcgat accagcggct
    34021 ttcgatggca aagacgttat cgcacggcag cagtgatgcc agcggatggt cttcacgcac
    34081 cgcctccacg cccacacgcg ctttgccgtt ggcatcgaaa cgcgccacgt agcgcagcac
    34141 cagccccatt tcgcgggccg cttccagccg ttgcaccatc tgctcgttaa gttcatcgcc
    34201 attttcaaag aaatggtcga tgctgccgcc ttcgcaatga gcaggcacca gcgattccac
    34261 acgtacctgg tccggttcaa tgttgtaacc cgcttcacgc gccagaatta ccagcttgcg
    34321 cattacgtct ttgccggaga ggtcgtcacg cggatcaggc tcggttaagc cctgctgcca
    34381 cgcctgatcc accagctcgg taaacggcac gctaccgtcg aattgcagga acagccagga
    34441 gagcgtgccg gagaagatcc cgctgatcga caaaatagta tcgccgctgt cgatcagatc
    34501 gcgcacggtg tggttgatcg gcaagcccgc accgacggtg gcattgtaca gccagtgacg
    34561 cccggttttt tcgaaggcgt cgtggatctg gcgatattta ttgctgtcgc tggctcccgc
    34621 cagtttgttg gcgctgataa cgtggaaacc gtggctggcg aaatcaagat actgatcagc
    34681 aagctgctgg ctggcggtaa cgtccagcac cactaaatca tcatacggat gggcgcgcat
    34741 ccacaggaac aacgactctt catcctgctc aaccgcttca tcgttgaaga aggctaacgc
    34801 gcggctggcg tccagcccgt catagctcaa caggctgcgg cggctgtcca ccacacctgc
    34861 cagcacaaac tcaaagccgg tacgtgccga aagcgtgctc tgctcacggg cgaacagttc
    34921 cagccaacgg gaaccgatat tgcccttacc gaacaatacc aggccgatgc gtttttctgc
    34981 gcggaagacg gactgatgca gcccctgaat caggctttcg gtcgggccgg tgcgcagtac
    35041 tgccaccagg ctgatgccgt catcggactg ccaggtaaat tcgaccggct ggcctttcag
    35101 ttgctgccag aagcggtggc aatgcagcgg gttacgggtg acgcctgcac cgaccatcgc
    35161 caccagcgcc agcccctgac gcaggcgcag ttcgccaggt aatcccgctt cgtcgaggat
    35221 tttcagcgca ctgtcggcca cttctgaggt gtagcaaaat tgcagcaact ggcgatcgtt
    35281 atgtacgcca accgccagcg ggcgtacctg cgcgcgtttc aggatttggt cgatctcttt
    35341 atgcgccagt ttgaaatcct gactggcggg cacctgaaac tcaatcaaac agacatcatc
    35401 gtggctggtg acaatacgcg caccagtacc ggaggccagc acgcgttcaa tgcgcgtgga
    35461 accttgatcc ggcgtgtagc tacagcgcag ttgcaggtcg atttcgctgc cagaaaccgg
    35521 ctgtaaagta cgggcgtgaa gaacgggagc cgccaggcgc gccagttcgc tggcctcatc
    35581 cagacgcagc aacggcagca ggcaggcatc tttcacttta cgcgggtcgg cactgtatac
    35641 cccggcgacg tcgctccaga tggttacgcg agaaacaccc gccagcgcac cgatttgtgt
    35701 cgcggaatag tcggaaccgt tacgccccag cagcaccgtt tcaccggcgt tgttgcggct
    35761 gataaatccg gtcaccacca gacgtttgcc cggatgttgc accagcagct gttgcagcaa
    35821 cgggtaagaa agcccttcat caacctgcgg ttgtgcggcg cgttcagcgc gtaaaaactc
    35881 gcgggcatca agccaggccg ctggcagccc ttgttgatta agtaccgcag acatcaggcg
    35941 tgccgaccat acttccccgt ggcccaccac ttccgcatac actgcgtcgt taataccgct
    36001 gtcgagcagc gccgccaggc gctcaaggtc gctgacaaaa gcgctaatga ggctatcagc
    36061 ttcttcagcg ggtagcagac cgctaatcag atcgcactga tagcgacgca gcgtttgttg
    36121 aacctgatgc gcagagagac gatcggtctg gcttagtttc aaccagttaa tcaactggtt
    36181 agtggtgcta ccggcggcgg aaaccaccat catatcgtca ggctgagagt actccgccat
    36241 aatgcccgca acacgcaaat aacacttcac atcagccaga ctactgccac caaatttatg
    36301 cagttgacga cctttcgccc ctgcctgcgc aatcacactc atttttaccc cttgtttgca
    36361 gcccggaagc cattttccag gtcggcaatt aaatcttcgc catcttcaat accggtggag
    36421 atacgcagca gcgtctcgga gatcccggcg gcagcacgcg cttctggtgc catgcctgca
    36481 tgtgtcatgg ttgcggcgtg agagattaaa ctttccactc cccctaatga ttccgccagc
    36541 gtaaacaacg acagcccgcc caggaaacga cgcagcgtct gctcatcgcc atccagttca
    36601 aaactcaaca ttgcgccaaa gcctttttgc tggcgcgcgg caatttcatg cccctgattt
    36661 tccggcagcg acgggtgata cagttttttc accaacggct gggtttgcag atatttcaca
    36721 atcgcctgcg cgttgcgctg ggccagctcc atacgcggca ccagcgttcg caacccgcgt
    36781 agcagcagat agctgtcaaa cgcgccgccc gtcacgccaa tattgtttgt ccaccaggca
    36841 agttcagtga caacgtccgg gtctttagca atcaccacgc cagccaccac gtcagagtga
    36901 ccgttcagat atttcgtaca tgaatgcaac accagatcgg cacccaatgc cagcggattt
    36961 tgtaatgccg ggcttaagaa ggtgttatcc accacgctca ccgccccgac ttcccttgcc
    37021 agatggcaga ttttcgcaat atccacgacg cgtaacaatg gattacttgg gctttctacc
    37081 agtaccagtt taggtttttc tgccagcgct gcccgtaatg cctgttcatc gccttgatca
    37141 acaaacaaca cgcgatagca accgcgtttc gccagactgt cgaacaggcg atagctaccg
    37201 ccgtagcagt cgtgcggcgc aaccagcaga tcgccaggtt tcaaaaagac ggtcgttacc
    37261 aagtgaatcg cggacatgcc ggtattagta agtactgcgc cagcaccgcc ttccagttct
    37321 gccagcgcac gctgaaccac atcgcgcgtt gggttgccgc gacgcgagta atcatgcgcg
    37381 cgcggttcat taaatccggt aaagttatag gtgctggaaa gatggatggg agggacaacg
    37441 caaccatact gttcgtcgtc atttaacccg ctacgcactg cgatggtggc ctgtttacgc
    37501 gtcatgtgat gaagtttcct gggctttgtc ggtgaaatgt caggcaccag agtaaacatt
    37561 gtgttaatgg acgtcaatac atctggacat ctaaacttct ttacgtatag attgagcaaa
    37621 tcccaaatag ccgttaaaat tatatgcatt atcacgccga caggtgcatt acacgatgtc
    37681 acggtaacgc ctgtacggta aactatgcgg gtttacggtc agtacccaca taaattgtgt
    37741 ggtctggtct caatttattg acgaagagga ttaagtatct catggctgaa tggagcggcg
    37801 aatatatcag cccatacgct gagcacggca agaagagtga acaagtcaaa aagattacgg
    37861 tttccattcc tcttaaggtg ttaaaaatcc tcaccgatga acgcacgcgt cgtcaggtga
    37921 acaacctgcg tcacgctacc aacagcgagc tgctgtgcga agcgtttctg catgccttta
    37981 ccgggcaacc tttgccggat gatgccgatc tgcgtaaaga gcgcagcgac gaaatcccgg
    38041 aagcggcaaa agagatcatg cgtgagatgg ggattaaccc ggagacgtgg gaatactaaa
    38101 gcaaaaaaga gcggcgcgga gtggaatcgc ctgatgcgct acgcttatca ggcctacgtc
    38161 atattgcaat ttattgaatt tgcacgaact tgtaggccgg ataaggcgtt cacgccgcat
    38221 ccggcataaa caacgagcac gttgtctgcg acccaccgct ttttatacat ggacgtttaa
    38281 ctatgaaaaa caggctgctg atcctcagcc tgctggtttc tgtacctgcc tttgcctggc
    38341 agccacaaac cggcgacatc atctttcaga tctctcgctc atcgcaaagt aaagcgatcc
    38401 aactggcgac ccattccgat tatagccaca ccggtatgct ggtgatacgc aacaaaaagc
    38461 cctacgtttt tgaagcggtc ggcccggtga aatacacccc gctcaagcag tggatcgccc
    38521 atggtgaaaa gggcaaatac gttgttcgcc gcgttgaagg cggactgagt gttgaacaac
    38581 agcaaaaact ggcgcaaacg gtaaaacgtt atctcggtaa accgtatgat ttcagcttct
    38641 catggagcga cgatcgccag tactgttcgg aagtggtgtg gaaggtttac cagaacgcgc
    38701 tgggaatgcg cgtgggcgag cagcagaagt tgaaagagtt cgatctcagc aacccgctgg
    38761 tccaggctaa gctcaaagaa cgctacggca aaaatattcc gcttgaggaa acggtagttt
    38821 caccacaagc cgttttcgac gcgccacaac tcaccacggt tgccaaagag tggccgctgt
    38881 tttcgtggta atggatgatg aaaaaaataa ttcccgccgt agtctgtttg ttgctttgta
    38941 gttgcacgac ctttccgcaa actgtcgctc cggtaaacgg tgatgcctcc aattagttga
    39001 attaaggata taatactcgc ttttaaggtt gtttcatggt cacagttaac cttcattgcc
    39061 cccgttgcca gtccgttcag gtttaccgtc acgggcagaa cccaaaaaga catgatcgat
    39121 tccgcggccg tgactgtcac cgggtatttc agctcagtta ctgttacgag ccccgtaaac
    39181 cgggagttaa agaccaaatc gctgaaatga ctttcaacgg tgccggggtt cgcgatactg
    39241 cccgtacgct gaaaatcggc attaatacag tcatccgaac tttaaaaaac tctcgccacg
    39301 aagaataacg tcatccccgg tcgctcatgc tgatgtggca ctcatctgcg aacttagtca
    39361 gcaatggagc tttgtcggca gtaaagcgcg acagcactgg ctctggtacg tgtacaacac
    39421 gaaaactggt ggtgttctgg cctacacttt tggcccccgg actgacgaaa cctgtcgtga
    39481 attgctggcg ctgcttaccc ttttaccatc ggcatgttga ccactgacga atggggtagt
    39541 tacaccagag agttaccgaa ggaaaagcat ctgactggta agatttttac tcagcgcatt
    39601 gagcgcaaca atctgaccct gagaacccga atcaaacgtc tggcccgcag aaccatctgt
    39661 ttctcgcgct ctgtagaact tcatgaaaaa gtcatcggtg cttttatcga aaatatatgt
    39721 tctactaatt ggagtcatca cccttctgat gagctttcct tggatgatta ccagactgaa
    39781 tacacagcca aagattttta cctcattctg ctcttttttc tcaaatgaca tatattatat
    39841 tttacatcat attcataggc atatgacatt cccccgcccc cattatgtca ttgtgggttg
    39901 atgttgggct ttcataaaaa aaacatcttt ttttgaacta gcattaatta tatttacttt
    39961 atatattaaa atattttctc catctggaaa tattttagcc acacaatata aagcagctga
    40021 atccgaatta cttaaaaata tattatcatt acccataact ccagccatta aattactgga
    40081 gactaaagca aggaaataac aacattgtat tgccttcatt ttaattactc ccttgtctga
    40141 taattgtaac tccattccct ttagctttgg gattatattt tagataggtg ttatttggtg
    40201 ttcccaagta actgcttgta ttcttttttt cccattccat tcatataaga attcgttaaa
    40261 tctttgcttg aaaaatttag actatcataa acatcatttt cttttgttac tttatttcct
    40321 ttatcgtcag agtaaaaacc gtgagtgtga taatcgccta ctctctctga accttcaggg
    40381 cattttatat ttcgcaagtc tacactatca ttatcatttg aacttatcgg attcatgggg
    40441 aaatattcac cttgcttctt acatattagt ccaccatatt ctttattctc gttaattgat
    40501 tctccattac acat
//
LOCUS       DAJVSY010000014        40425 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.014, whole genome shotgun sequence.
ACCESSION   DAJVSY010000014 DAJVSY010000000
VERSION     DAJVSY010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 40425)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40425)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40425
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.014"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(350..556)
                     /locus_tag="OQQ19_000693"
     CDS             complement(350..556)
                     /locus_tag="OQQ19_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbfA family protein"
                     /protein_id="HCS1802428.1"
                     /translation="MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLH
                     RVWSKTSDKPVWMEQAEKATGDFY"
     gene            869..958
                     /gene="kdpF"
                     /locus_tag="OQQ19_000694"
     CDS             869..958
                     /gene="kdpF"
                     /locus_tag="OQQ19_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
                     /protein_id="HCS1802429.1"
                     /translation="MSAGVIAGVLLVFLLLGYLVYALINAEAF"
     gene            958..2631
                     /gene="kdpA"
                     /locus_tag="OQQ19_000695"
     CDS             958..2631
                     /gene="kdpA"
                     /locus_tag="OQQ19_000695"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706533.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HCS1802430.1"
                     /translation="MAAQGFLLIATFLLVLMVLARPLGSGLARLINDIPLPGTAGVER
                     ILFRLPGVSDHEMNWKQYLCAILGLNMLGLAVLFFMLLGQHYLPLNPQQLPGLSWDLA
                     LNTAVSFVTNTNWQSYSGETTLSYFSQMAGLTVQNFLSAASGIAVIFAFIRAFTRQSM
                     STLGNAWVDLLRITLWVLVPVALLIALFFIQQGALQNFLPYQAVNTVEGAQQLLPMGP
                     VASQEAIKMLGTNGGGFFNANSSHPFENPTALTNFVQMLAIFLIPTALCFAFGEVTGD
                     RRQGRMLLWAMSVIFVICVGVVMWAEVQGNPHLLALGADSSINMEGKESRFGVLVSSL
                     FAVVTTAASCGAVIAMHDSFTALGGMVPMWLMQIGEVVFGGVGSGLYGMMLFVLLAVF
                     IAGLMIGRTPEYLGKKIDVREMKLTALAILVTPTLVLMGAALAMMTDAGRSAMLNPGP
                     HGFSEVLYAVSSAANNNGSAFAGLSANSPFWNCLLAFCMFVGRFGVIIPVMAIAGSLV
                     SKKSQPASSGTLPTHGPLFVGLLIGTVLLVGALTFIPALALGPVAEYLS"
     gene            2654..4702
                     /gene="kdpB"
                     /locus_tag="OQQ19_000696"
     CDS             2654..4702
                     /gene="kdpB"
                     /locus_tag="OQQ19_000696"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HCS1802431.1"
                     /translation="MSRKQLALFEPTLVVQALKEAVKKLNPQAQWRNPVMFIVWIGSL
                     LTTCISIAMASGAMPGNALFSAAISGWLWVTVLFANFAEALAEGRSKAQANSLKGVKK
                     TAFARKLREPKYGAAADKVPADQLRKGDIVLVEAGDIIPCDGEVIEGGASVDESAITG
                     ESAPVIRESGGDFASVTGGTRILSDWLVIECSVNPGETFLDRMIAMVEGAQRRKTPNE
                     IALTILLIALTIVFLLATATLWPFSAWGGNAVSVTVLVALLVCLIPTTIGGLLSAIGV
                     AGMSRMLGANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQASEFIPAQGVDEKTLA
                     DAAQLASLADETPEGRSIVILAKQRFNLRERDVQSLHATFVPFTAQSRMSGINIDNRM
                     IRKGSVDAIRRHVEANGGHFPADVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVK
                     GGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQA
                     EGRLVAMTGDGTNDAPALAQADIAVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVHIGK
                     QMLMTRGSLTTFSITNDVAKYFAIIPAAFAATYPQLNALNIMRLHSPDSAILSAVIFN
                     ALIIVFLIPLALKGVSYKPLTASAMLRRNLWIYGLGGLLVPFIGIKVIDLLLTVCGLV
                     "
     gene            4711..5254
                     /gene="kdpC"
                     /locus_tag="OQQ19_000697"
                     /pseudo
     CDS             4711..5254
                     /gene="kdpC"
                     /locus_tag="OQQ19_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308751.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit C"
     gene            5247..7931
                     /gene="kdpD"
                     /locus_tag="OQQ19_000698"
     CDS             5247..7931
                     /gene="kdpD"
                     /locus_tag="OQQ19_000698"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     KdpD"
                     /protein_id="HCS1802432.1"
                     /translation="MNNEPLRPDPDRLLEQTAAPHRGKLKVFFGACAGVGKTWAMLAE
                     AQRLRAQGLDIVVGVVETHGRKDTDAMLEGLAVLPPKRLAYRGRHICEFDLDAALARR
                     PALILMDELAHSNALGSRHPKRWQDIEELLEAGIDVFTTVNVQHLESLNDVVSGVTGI
                     QVRETVPDPFFDAADDVVLVDLPPDDLRQRLKEGKVYIAGQAERAIEHFFRKGNLIAL
                     RELALRRTADRVDEQMRAWRGHPGEEKVWHTRDAILLCIGHNTGSEKLVRAAARLASR
                     LGSVWHAVYVETPALHRLPEKKRRAILSALRLAQELGAETATLSDPAEEKAVVRYARE
                     HNLGKIILGRPASRRWWRRETFADRLARIAPDLDQVLVALDEPPARTINNAPDSRSFK
                     DKWRVQIQGCVVAAALCAVITLIAMQWLMAFDAANLVMLYLLGVVVVALFYGRWPSVV
                     ATVINVVSFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRYQARVARYR
                     EQRTRHLYEMSKALAVGRSPQDIAATIEQFIASTFHARSQVLLPDDNGKLQPLTHPQG
                     MTPWDDTIAQWSFDKGLPAGAGTDTLPGVPYQILPLKSGEKTYGLVVVEPGNLRQLMI
                     PEQQRLLETFTLLVANALERLTLTASEEQARMASEREQIRNALLAALSHDLRTPLTVL
                     FGQAEILTLDLASEGSPHARQASEIRQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLT
                     LEEVVGSALQMLEPGLSSPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAE
                     IGIDAHVEGENLQLDVWDNGPGLPPGQEQTIFDKFARGNKESAVPGVGLGLAICRAIV
                     DVHGGTITAFNRPEGGACFRVTLPQQTAPELEEFHEDM"
     gene            7928..8605
                     /gene="kdpE"
                     /locus_tag="OQQ19_000699"
     CDS             7928..8605
                     /gene="kdpE"
                     /locus_tag="OQQ19_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator KdpE"
                     /protein_id="HCS1802433.1"
                     /translation="MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGLLEAATR
                     KPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKP
                     FGIGELQARLRVALRRHSATAAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFHLL
                     AVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETG
                     IGYRFML"
     gene            complement(8821..9078)
                     /locus_tag="OQQ19_000700"
     CDS             complement(8821..9078)
                     /locus_tag="OQQ19_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802434.1"
                     /translation="MQKPLPVRWLIIQGLTENEHCGIQAYACNTESQEDLYAEVPLVG
                     RLTGIEEVKVEAIAMSKLHNMSCPPYMGHSAAVIFHLIYLS"
     gene            9201..11399
                     /gene="speF"
                     /locus_tag="OQQ19_000701"
     CDS             9201..11399
                     /gene="speF"
                     /locus_tag="OQQ19_000701"
                     /EC_number="4.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase SpeF"
                     /protein_id="HCS1802435.1"
                     /translation="MSKLKIAVSDSCPDCFTTQRECIYINESRNIDVAAIVLSLNDVT
                     CGKLDEIDATGYGIPVFIATENQERVPAEYLPCISGVFENCESRREFYGRQLETAASH
                     YETQLRPPFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGEALFRSDLC
                     NADVAMGDLLIHEGAPCIAQQHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVL
                     FDRNNHKSNHHGALLQAGATPVYLETARNPYGFIGGIDAHCFEESYLRELIAEVAPQR
                     TKEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCS
                     PLLLDLNENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQQRYVPHKRMNNAFMMH
                     ASTSPFYPLFAALDINAKMHEGVSGRNMWMDCVVNGINARKLILDNCQHIRPFVPELV
                     DGKPWQSYETAQIAVDLRFFQFVPGEHWHSFEGYAENQYFVDPCKLLLTTPGFDARNG
                     EYEAFGVPATILANFLRENGVVPEKCDLNSILFLLTPAEDMAKLQQLVALLVRFEKLL
                     ESDAPLAEVLPSIYKQHEERYAGYTLRQLCQEMHDLYARHNVKQPQKEMFRKEHFPRV
                     SMNPQEANYAYSRGEVELVRLPDAEGRIAAEGALPYPPGVLCVVPGEIWGGAVLRYFS
                     ALEEGINLLPGFAPELQGVYIEEHDGRKQVWCYVIKPRDAQSTLLKGEKL"
     gene            11396..12734
                     /gene="potE"
                     /locus_tag="OQQ19_000702"
                     /pseudo
     CDS             11396..12734
                     /gene="potE"
                     /locus_tag="OQQ19_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415219.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine-ornithine antiporter"
     gene            12810..12959
                     /locus_tag="OQQ19_000703"
                     /pseudo
     CDS             12810..12959
                     /locus_tag="OQQ19_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415222.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
     gene            13083..13733
                     /locus_tag="OQQ19_000704"
     CDS             13083..13733
                     /locus_tag="OQQ19_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001208812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2625 domain-containing protein"
                     /protein_id="HCS1802436.1"
                     /translation="MREMNQLVNTEDSAWPIIQNWLKDATNHTELLPVNKNLAETALY
                     QLQVTTKSPMGALVYGSGGLLIDNGWLRIAGSGHPRLPRDPVSWTQRPEFAGVRALPI
                     ADDVAGGIFALNGGDLGEDTGCVYYFAPDTLNWESLEVGYSEFLQWALSGDLDTFYEN
                     VRWQQWREDVIKLSATEAFTFYPFLWVQSEEARTRKVISLTELWEMQYQMKETFTQ"
     gene            complement(13774..14268)
                     /locus_tag="OQQ19_000705"
     CDS             complement(13774..14268)
                     /locus_tag="OQQ19_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802437.1"
                     /translation="MKTNRSLVVIVSLITATLLLTACAQPEQSSLAGDWLLTPKDKTR
                     RLTGSIAVNIAPSRCKTNCRGDNLPDNTRRWQLSGGNEKELTYLHNMSAQEKVGLNPG
                     WQCYTSFFMRVCQGKPGTRPIVNEDYVSESGFFGSMMHVGIIELRRCQSENCQQELKA
                     INTH"
     gene            complement(14483..16123)
                     /gene="pgm"
                     /locus_tag="OQQ19_000706"
     CDS             complement(14483..16123)
                     /gene="pgm"
                     /locus_tag="OQQ19_000706"
                     /EC_number="5.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-glucose phosphate-specific
                     phosphoglucomutase"
                     /protein_id="HCS1802438.1"
                     /translation="MAIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGT
                     SGHRGSAARHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVL
                     AANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPP
                     NGGPADTNVTKVVEDRANALLADGLKGVKRISLDEAMASGHVKEQDLVQPFVEGLADI
                     VDMAAIQKAGLTLGVDPLGGSGIEYWKRIGEYYNLNLTIVNDQVDQTFRFMHLDKDGA
                     IRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQ
                     HRPQWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEES
                     AGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAKRFGAPSYNRLQA
                     AATSAQKAALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARP
                     SGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA"
     gene            complement(16149..16694)
                     /gene="seqA"
                     /locus_tag="OQQ19_000707"
     CDS             complement(16149..16694)
                     /gene="seqA"
                     /locus_tag="OQQ19_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation negative regulator SeqA"
                     /protein_id="HCS1802439.1"
                     /translation="MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAP
                     VTKEVRVASPAIAEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLD
                     AQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMI
                     EHIMQSMQFPAELIEKVCGTI"
     gene            16879..17643
                     /gene="ybfF"
                     /locus_tag="OQQ19_000708"
     CDS             16879..17643
                     /gene="ybfF"
                     /locus_tag="OQQ19_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HCS1802440.1"
                     /translation="MKLNIRAQTAQNQHNNSPIVLVHGLFGSLDNLGVLARDLVNDHN
                     IIQVDMRNHGLSPRDPVMNYPAMAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALA
                     RDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQ
                     FLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPSGNSPYVSEQYRDDLL
                     AQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND"
     gene            17783..18076
                     /gene="ybfE"
                     /locus_tag="OQQ19_000709"
     CDS             17783..18076
                     /gene="ybfE"
                     /locus_tag="OQQ19_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415211.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA regulated protein"
                     /protein_id="HCS1802441.1"
                     /translation="MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKR
                     DKVRGLKRVELKLNAEAVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV"
     gene            18216..18746
                     /gene="fldA"
                     /locus_tag="OQQ19_000710"
     CDS             18216..18746
                     /gene="fldA"
                     /locus_tag="OQQ19_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HCS1802442.1"
                     /translation="MAITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDL
                     EAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDAL
                     GTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKW
                     VKQISEELHLDEILNA"
     gene            18956..19042
                     /gene="uof"
                     /locus_tag="OQQ19_000711"
     CDS             18956..19042
                     /gene="uof"
                     /locus_tag="OQQ19_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001491546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fur leader peptide"
                     /protein_id="HCS1802443.1"
                     /translation="MIRIISRANSVTSSNEVNRLVTGQIPHD"
     gene            19035..19481
                     /gene="fur"
                     /locus_tag="OQQ19_000712"
     CDS             19035..19481
                     /gene="fur"
                     /locus_tag="OQQ19_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HCS1802444.1"
                     /translation="MTDNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLI
                     DMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVIEF
                     SDDSIEARQREIAAKHGIRLTNHSLYLYGHCAEGDCREDEHAHEGK"
     gene            complement(19566..19892)
                     /locus_tag="OQQ19_000713"
     CDS             complement(19566..19892)
                     /locus_tag="OQQ19_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802445.1"
                     /translation="MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSP
                     EKIEACQSVLNVLKKEKQHQHFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQE
                     IRSNNK"
     gene            complement(19942..21348)
                     /gene="chiP"
                     /locus_tag="OQQ19_000714"
     CDS             complement(19942..21348)
                     /gene="chiP"
                     /locus_tag="OQQ19_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitoporin"
                     /protein_id="HCS1802446.1"
                     /translation="MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGG
                     IYYWQRERDRKDVTDGDKYKTNLSHSTWNANLDFQSGYAADMFGLDIAVFTAIEMAEN
                     GDSSHPNEIAFSKSNKAYDEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL
                     APHWSFMPGTYQGAEAGANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKV
                     DYLHSLGAKYDFKNNFVLEAAFGQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRD
                     KVDDRSVNDLYDGTAWLQALTFGYRAADVVDLRLEGTWVKADGQQGYFLQRMTPAYAS
                     SNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQS
                     NPDAYYDKNRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNI
                     FQDERDVKFMVIAPFTIF"
     gene            complement(21795..23459)
                     /gene="glnS"
                     /locus_tag="OQQ19_000715"
     CDS             complement(21795..23459)
                     /gene="glnS"
                     /locus_tag="OQQ19_000715"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HCS1802447.1"
                     /translation="MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGH
                     AKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSD
                     YFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEK
                     MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCI
                     SDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL
                     LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTRQDNTIEMASLESCIRE
                     DLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSSEIWIDRAD
                     FREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADG
                     RKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAADDFLSVINPESLVIKQGFAEPSL
                     KDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE"
     gene            complement(23662..25608)
                     /gene="nagE"
                     /locus_tag="OQQ19_000716"
     CDS             complement(23662..25608)
                     /gene="nagE"
                     /locus_tag="OQQ19_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N-acetyl glucosamine transporter subunit
                     IIABC"
                     /protein_id="HCS1802448.1"
                     /translation="MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQA
                     GGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGYFVLTKAMVTINPEINMGVLAGI
                     ITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIH
                     AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINR
                     FYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGV
                     TEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAGAIDYALMYNLPAAS
                     QNVWMLLVMGVVFFAIYFVVFSLVIRMFNLKTPGREDKEDEIVTEEANSNTEEGLNQL
                     ATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQTIQVI
                     VGAKAESIGDAMKKVVARGPVAAASAEATPSTAAPVAKPQAVPNAVSIAELVSPITGD
                     VVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEI
                     VVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDD
                     FSGLIIKAQGHVVAGQTPLYEIKK"
     gene            25941..26741
                     /gene="nagB"
                     /locus_tag="OQQ19_000717"
     CDS             25941..26741
                     /gene="nagB"
                     /locus_tag="OQQ19_000717"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008805656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HCS1802449.1"
                     /translation="MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGT
                     PMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAE
                     NINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIK
                     TLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEG
                     CVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRYFNELEAENIKGL"
     gene            26801..27949
                     /gene="nagA"
                     /locus_tag="OQQ19_000718"
     CDS             26801..27949
                     /gene="nagA"
                     /locus_tag="OQQ19_000718"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HCS1802450.1"
                     /translation="MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQR
                     SLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITT
                     SDELMKQGVRVMREYLARHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVDFLC
                     ENADVITKVTLAPEMVPAEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLY
                     NAMPYITGREPGLAGAILDEADIYCGIIADGLHVDYANIRNAKRLKGDKLCLVTDATA
                     PAGANIEQFIFAGKTIYYRNGLCVDENGTLSGSSLTMIEGVRNLVEHCGIALDEVLRM
                     ATLYPARAIGVEKRLGTLAAGKVANLTAFTPDFKITKTIVNGNEVVTQ"
     gene            27958..29178
                     /gene="nagC"
                     /locus_tag="OQQ19_000719"
                     /gene_synonym="nagR"
     CDS             27958..29178
                     /gene="nagC"
                     /locus_tag="OQQ19_000719"
                     /gene_synonym="nagR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NagC"
                     /protein_id="HCS1802451.1"
                     /translation="MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQL
                     APASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITL
                     FDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDP
                     DSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILV
                     RVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQ
                     RVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFN
                     PQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKR
                     AMLNGILLQHLLEN"
     gene            29226..29978
                     /gene="nagD"
                     /locus_tag="OQQ19_000720"
     CDS             29226..29978
                     /gene="nagD"
                     /locus_tag="OQQ19_000720"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide monophosphatase NagD"
                     /protein_id="HCS1802452.1"
                     /translation="MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNY
                     PSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKA
                     GFTITDVNPDFVIVGETSSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALC
                     AGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETI
                     LVLSGVSSLDDIDSMPFRPSWIYPSVAEIDVI"
     gene            30375..32039
                     /gene="asnB"
                     /locus_tag="OQQ19_000721"
     CDS             30375..32039
                     /gene="asnB"
                     /locus_tag="OQQ19_000721"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001724523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase B"
                     /protein_id="HCS1802453.1"
                     /translation="MCSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNA
                     ILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEV
                     ILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVAS
                     EMKSLVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDFDAVKDNVTDKNELRQALED
                     SVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP
                     GSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMS
                     RKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKA
                     MSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNGKMEKHILRECFESYLPASVAWRQK
                     EQFSDGVGYSWIDTLKEVAAQQVSNQQLETARFRFPYNTPTSKEAYLYREIFEELFPL
                     PSAAECVPGGPSVACSSAKAIEWDEAFKKMDDPSGRAVGVHQSAYK"
     gene            32420..32496
                     /locus_tag="OQQ19_000722"
     tRNA            32420..32496
                     /locus_tag="OQQ19_000722"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32454..32456,aa:Met,seq:cat)
     gene            32505..32589
                     /locus_tag="OQQ19_000723"
     tRNA            32505..32589
                     /locus_tag="OQQ19_000723"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32539..32541,aa:Leu,seq:tag)
     gene            32613..32687
                     /locus_tag="OQQ19_000724"
     tRNA            32613..32687
                     /locus_tag="OQQ19_000724"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32645..32647,aa:Gln,seq:ttg)
     gene            32722..32796
                     /locus_tag="OQQ19_000725"
     tRNA            32722..32796
                     /locus_tag="OQQ19_000725"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32754..32756,aa:Gln,seq:ttg)
     gene            32812..32888
                     /locus_tag="OQQ19_000726"
     tRNA            32812..32888
                     /locus_tag="OQQ19_000726"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32846..32848,aa:Met,seq:cat)
     gene            32937..33011
                     /locus_tag="OQQ19_000727"
     tRNA            32937..33011
                     /locus_tag="OQQ19_000727"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32969..32971,aa:Gln,seq:ctg)
     gene            33049..33123
                     /locus_tag="OQQ19_000728"
     tRNA            33049..33123
                     /locus_tag="OQQ19_000728"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:33081..33083,aa:Gln,seq:ctg)
     gene            complement(33277..34452)
                     /gene="ubiF"
                     /locus_tag="OQQ19_000729"
     CDS             complement(33277..34452)
                     /gene="ubiF"
                     /locus_tag="OQQ19_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706550.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
                     hydroxylase"
                     /protein_id="HCS1802454.1"
                     /translation="MTNQPTEIAIVGGGMVGGALALGLAQHGFSVTVIEHAEPAPFVA
                     DSQPDVRISAISAASVSLLKGLGVWDAVQAMRCHPYRRLETWEWETAHVVFDAAELKL
                     PLLGYMVENTVLQQALWQALEAHPKVTLRVPGSLIALHRDNDLQELELKGGETIRAKL
                     VIGADGANSQVRQMAGIGVHAWQYAQSCMLISVQCENDPGDSTWQQFTPDGPRAFLPL
                     FDNWASLVWYDSPARIRQLQNMNMAQLQAEIAKHFPSRLGYVTPLAAGAFPLTRRHAL
                     QYVQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALIDVLVNARSYGEAWASYPVLKRY
                     QMRRMADNFIMQSGMDLFYAGFSNNLPPLRFVRNLGLMAAERAGVLKRQALKYALGL"
     gene            34598..36022
                     /gene="miaB"
                     /locus_tag="OQQ19_000730"
     CDS             34598..36022
                     /gene="miaB"
                     /locus_tag="OQQ19_000730"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HCS1802455.1"
                     /translation="MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVL
                     LLNTCSIREKAQEKVFHQLGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDII
                     FGPQTLHRLPEMINSVRGDRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKY
                     CTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGSTGSF
                     ADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNL
                     MGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSY
                     SFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGT
                     SRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGKVVRTEDEMGLRV
                     AETPESVIARTRKENDLGVGYYQP"
     gene            36175..37215
                     /locus_tag="OQQ19_000731"
     CDS             36175..37215
                     /locus_tag="OQQ19_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415193.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HCS1802456.1"
                     /translation="MNIDTREITLEPADNARLLSLCGPFDDNIKQLERRLGIEINRRD
                     NHFKLTGRPICVTAAADILRSLYVDTAPMRGQIQDIEPEQIHLTIKEARVLEQSAESV
                     PEYGKAVNIKTKRGVIKPRTPNQAQYIANILDHDITFGVGPAGTGKTYLAVAAAVDAL
                     ERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVEKLIER
                     NVIEVAPLAYMRGRTLNDAFIILDESQNTTIEQMKMFLTRIGFNSKAVITGDVTQIDL
                     PRNTKSGLRHAIEVLADVEEISFNFFHSEDVVRHPVVARIVNAYEAWEEAEQKRKAAL
                     AAERKREEQEQK"
     gene            37212..37679
                     /gene="ybeY"
                     /locus_tag="OQQ19_000732"
     CDS             37212..37679
                     /gene="ybeY"
                     /locus_tag="OQQ19_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014169133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HCS1802457.1"
                     /translation="MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQFQEESEVTIR
                     VVDTAESHSLNLTYRGKDKPTNVLSFPFEVPPGMEMSLLGDLVICRQVVEKEAQEQGK
                     PLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAEKE"
     gene            37769..38647
                     /gene="corC"
                     /locus_tag="OQQ19_000733"
     CDS             37769..38647
                     /gene="corC"
                     /locus_tag="OQQ19_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308723.1"
                     /note="CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter
                     (CNNM) family, and was characterized as belonging to a set
                     of three proteins, at least one of which must be present
                     for CorA to function; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family magnesium/cobalt transport protein
                     CorC"
                     /protein_id="HCS1802458.1"
                     /translation="MSDDNSHSSDTISNKKGFFSLLLSQLFHGEPKNRDELLALIRDS
                     GQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSR
                     FPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRS
                     QRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALA
                     SIEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQ
                     VHVKIPDDSPQPKLDE"
     gene            38672..40210
                     /gene="lnt"
                     /locus_tag="OQQ19_000734"
     CDS             38672..40210
                     /gene="lnt"
                     /locus_tag="OQQ19_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HCS1802459.1"
                     /translation="MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGL
                     QALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLS
                     LYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPL
                     KGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQP
                     EKTIQVSMVQGDIPQSLKWDGDQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEIN
                     QQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYN
                     KNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSVNGIELTAAICYEIIL
                     GEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITA
                     VIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLR
                     ARKR"
BASE COUNT         9623 a        10347 c        10518 g         9937 t
ORIGIN      
        1 gaacaggcca cgccggtggg ggcaccaatg cgcaccccgg ctgaaccctg aacaatgcta
       61 ccgccatact gcgtcatgtc gccctgacgc gctgccggtt ttccgctcat ttctcatcct
      121 tgttttatcg ggttatttgt ccgctgacag gcaaaaccct acagatttat aagaaagcct
      181 taagtgagat atccatcaga tagaaacaat taggaaaata tttatatatt tttcctgaat
      241 atatttcagc tgggtaatac catatctaaa tatttacctg aacatcttcc taataaaaaa
      301 accgccagca tctccactag cggttttcaa tgtattcaaa actcggcaat cagtaaaaat
      361 caccggttgc cttttcggcc tgttccatcc aaaccggttt atcgctggtt ttcgaccaga
      421 cgcggtgcag gtagctgtaa aagcgggcgc ggtctttcca gaaaagcatg aaaggcagcg
      481 ccagaacgcc cgctgcaacc gcatatgtac ggcgtaaaaa gataagccat gcaggatatt
      541 ctctgtagag ttccatactt ttctccccct tttgtatcta cccggtgaat agcaccggaa
      601 aaatgaattt gtttatctga tgaaaatagt accgcctttt gtgtaatttt actactcatc
      661 cgaccactta tttttgctta ttgatggttt atttacattc actctgtaat taagttgcat
      721 aaaagttaaa ttaatgctaa acattagtta aaccatggct tttgccattt ttatactttt
      781 tttacacccc gcccgcagat ttttgcgaaa tctttgcagc cagaattcta ctcttccggt
      841 atcactttta ggccactgga ggtgcactgt gagtgcaggc gtgatagccg gcgtgttgct
      901 ggtgttttta ttactgggtt atttggttta tgccctgatc aatgcggagg cgttctgatg
      961 gctgcgcaag ggttcttact gattgccacg tttttactgg tattaatggt gctggcgcgt
     1021 cctttaggca gcgggctggc gcggctgatt aatgacattc ctcttccagg tacagcgggc
     1081 gttgaacgta tactctttcg tttacctggc gtctctgacc atgagatgaa ctggaagcaa
     1141 tatctttgtg ccattctcgg cctgaacatg ctggggctgg cggtgctgtt ttttatgttg
     1201 ctcggtcagc actatctgcc gcttaatcca cagcagttgc cggggctgtc gtgggatctg
     1261 gcgctgaata ccgccgtcag ctttgtcacg aataccaact ggcaatctta tagcggtgaa
     1321 accacgttga gctatttcag ccagatggca ggcttaacgg tacaaaactt tctttctgcc
     1381 gccagcggga ttgcggtgat ttttgccttc atccgtgcgt ttactcgcca gagcatgagc
     1441 acactcggga atgcctgggt cgatctgcta cgcatcacgt tatgggtgct agtccctgtg
     1501 gcgttgttga tcgcactgtt ttttattcaa caaggtgcgc tgcaaaactt tctgccctat
     1561 caggcagtga ataccgttga aggagcgcaa cagctgttac ccatgggacc agtagcttct
     1621 caggaagcga tcaagatgct cggtactaac ggcggtggct tctttaatgc caactcgtcg
     1681 catccgtttg aaaacccaac cgcactgacc aacttcgtgc agatgctggc gatcttcttg
     1741 atcccaacag ctctgtgctt tgcctttggt gaagtgacgg gcgatcgccg ccaggggcgc
     1801 atgttgctgt gggcgatgtc agtgattttt gtcatctgcg taggcgtggt tatgtgggca
     1861 gaagttcagg gtaatcctca tctgctggcg ctcggcgcag acagcagcat caatatggaa
     1921 ggtaaagaga gccgtttcgg cgtgctggtc agtagcctgt ttgcggtcgt gactacggcg
     1981 gcgtcctgtg gcgcggtgat tgcgatgcat gattcgttta ccgctctcgg cggcatggtg
     2041 ccgatgtggc taatgcaaat tggtgaagtg gtgttcggcg gtgtcggttc tggtctttac
     2101 ggcatgatgc tgtttgtcct gctggcggtg tttattgccg ggctgatgat tggtcgtaca
     2161 ccggaatatc tgggtaaaaa aatcgacgta cgcgagatga aactgactgc actggcgatt
     2221 ctggttactc caacactggt actgatgggc gcggcgttgg cgatgatgac cgacgccgga
     2281 cgtagcgcca tgcttaaccc tggcccgcat ggttttagcg aagtgctgta cgccgtgtcg
     2341 tccgccgcta acaacaacgg cagcgccttt gccggattaa gcgccaactc tccgttctgg
     2401 aactgtttac tggcgttctg catgtttgtc ggtcgcttcg gggtgattat cccggtgatg
     2461 gcaattgccg gttcgctggt gagtaaaaag agccaacccg ccagctccgg cacgctgcca
     2521 acgcacggcc cgctgtttgt tggcctgtta atcggcaccg tgttgctggt tggcgcactg
     2581 acctttatcc ctgccctggc gcttggtccg gtggcggaat atctctcctg atgatattga
     2641 gtgagcactg aatatgagtc gtaaacaact ggcgctattc gaaccaacac ttgtcgttca
     2701 ggcgctgaaa gaagcggtga aaaaattaaa cccgcaggcg caatggcgca atccggtgat
     2761 gtttatcgtc tggatcggca gtctgctgac cacctgtatt agcatcgcga tggcaagcgg
     2821 tgcgatgcct ggcaatgcgc tgtttagcgc ggcaattagc ggctggctgt gggtcaccgt
     2881 actgttcgct aatttcgccg aggcgctggc agaaggccgc agtaaagcgc aggccaacag
     2941 tcttaaaggg gtgaaaaaaa ctgcctttgc ccgcaagctg cgtgagccga aatatggcgc
     3001 tgcggcggac aaagttcctg ccgatcaact gcgtaaaggt gacatcgtgc tggtagaagc
     3061 tggcgatatt atcccctgcg atggtgaagt cattgaaggc ggcgcatcgg tcgatgaaag
     3121 cgccatcacc ggggaatcgg caccggtgat ccgtgaatcc ggcggcgatt ttgcctccgt
     3181 caccggcggc acgcgtattc tttctgactg gctggtgatt gagtgtagcg ttaaccccgg
     3241 tgagacattt ctggatcgga tgatcgcgat ggtggaaggc gcacagcgac gcaaaacacc
     3301 gaacgagatt gccctgacta tcctgctgat tgctctgacc atcgtctttt tactggcaac
     3361 cgccacgctg tggccgtttt ccgcgtgggg cggtaatgcc gtgagtgtaa cggtactggt
     3421 ggcgctgctg gtctgtctga tcccaaccac tattggcggc ctgttgtcag cgatcggcgt
     3481 cgccgggatg agtcggatgc tgggcgcgaa tgtgattgcc accagcggac gtgcagttga
     3541 agcggcaggt gacgttgacg ttctgctact ggataaaacc ggcaccatca cactcggtaa
     3601 ccgtcaggcg tcggagttta tccctgcgca gggcgtggat gaaaaaacgc tggctgacgc
     3661 cgcacaactg gcttcgctgg ctgatgaaac gccggaaggc cgcagtattg tgatcctcgc
     3721 caagcaacgt tttaacctgc gcgagcgcga tgtgcagtcg ctccatgcca cctttgtacc
     3781 gtttactgcg caaagccgga tgagcgggat caacatcgac aaccgcatga tccgtaaagg
     3841 ttctgtcgat gccattcgcc gccatgttga ggctaacggc ggtcacttcc ctgccgatgt
     3901 tgatcaaaaa gtcgatcagg ttgcgcgtca gggggccacg ccgctggtgg tggtggaagg
     3961 ttcccgtgtg ctgggcgtta ttgcgctgaa agatatcgtc aaaggcggta ttaaagagcg
     4021 cttcgcccag ctgcgcaaaa tgggcattaa aacggtgatg attaccggcg ataaccgtct
     4081 gactgccgcc gccattgctg cggaagcggg cgtcgatgat tttctcgccg aagcgacacc
     4141 ggaggccaag ctggcattga ttcgtcagta tcaggcggaa ggccgtttgg tggcgatgac
     4201 cggcgacggc accaacgatg ctccggcgct ggcgcaagca gatatcgcgg tggcgatgaa
     4261 ctccggcacc caggcggcga aagaggcggg caatatggtc gatctcgact ctaacccgac
     4321 caagttgatc gaggtggtgc atattggcaa acagatgctg atgacccgtg gctcgctgac
     4381 caccttcagc attaccaacg atgtggcgaa atacttcgcc attattccgg cggcgttcgc
     4441 ggcaacgtat ccgcagttaa atgcgctgaa catcatgcgc ctgcattcgc ccgactccgc
     4501 cattctcagt gcagtcattt tcaacgcctt gattatcgtc tttttgattc ctctggcgtt
     4561 aaaaggcgtg agttataaac cgcttaccgc ttctgccatg ttgcgccgta acttatggat
     4621 ttacggtctg ggtgggctgc tggtgccgtt tattggtatc aaagtcattg atttactgct
     4681 gaccgtttgc ggtctggtgt gaggtttacc atgcgtggct tacgtccggc attatcgaca
     4741 tttatctttc tgttattgat tactggcggc gtttacccgc tgctgaccac cgtgctgggg
     4801 caatggtggt ttccctggca ggccaacggt tcgttgattc gtgaaggtga tacggtgcgg
     4861 ggttcggcat taatcgggca gaattttacc ggcaacggca gaaatgccct ataatccaca
     4921 ggcttctggc gggagcaatc tggcggtcag taaccctgag ctggataaac aaatagccgc
     4981 acgcgttgct gcattacggg ccgctaaccc ggatgccagt acgaacgttc cggttgaact
     5041 ggtgacggca tcggcaagcg ggctggacaa taatatcacc ccgcaagcgg cggcctggca
     5101 gatcccacgc atcgcgaaag cgcgtaatct cagcgttgaa cagctcacgc agctgatcgc
     5161 aaaatacagc caacaaccgc tggtgaaata tatcggccag ccggtcgtca acattgtcga
     5221 actcaatctg gcgctggata agcttgatga ataacgaacc cttacgtccc gaccccgatc
     5281 gtctgctgga acaaactgcc gcgccgcatc gggggaagct gaaagttttc ttcggtgcct
     5341 gtgcaggcgt cgggaagacc tgggcgatgc tggcagaagc ccagcgactg cgggcgcaag
     5401 ggctggatat tgtggttggc gtggtagaaa cccacgggcg aaaagatacc gacgcaatgc
     5461 tggaagggct ggctgttctg ccgccaaaac gcctggcgta ccgtgggcgg cacatctgcg
     5521 agtttgacct cgatgccgcc ctcgcccgcc gtccggcgct gatcttaatg gacgaactgg
     5581 cgcacagtaa tgcgctaggt tctcgtcacc ctaaacgctg gcaggacatc gaagagctgc
     5641 tggaagcagg cattgatgtt ttcactaccg tcaacgttca gcatctggaa agtctgaatg
     5701 atgtggtcag cggcgtcacc ggaattcagg tacgggaaac cgtgcccgat ccttttttcg
     5761 atgccgccga cgacgtggtt ctggtggact tgcccccgga cgatctgcgc cagcggctga
     5821 aagaaggcaa agtctatatt gccgggcagg cggagcgcgc cattgaacat tttttccgca
     5881 aaggcaatct gatcgccctg cgcgaactgg cactgcgccg tactgccgat cgcgttgatg
     5941 agcaaatgcg cgcctggcgg gggcatcctg gcgaagagaa agtctggcac acgcgcgacg
     6001 cgatcctttt atgcatcggc cataacaccg gtagtgagaa gctggtccgc gcggcggcgc
     6061 ggctggcgtc acggctgggt agcgtctggc acgcggtgta tgttgaaacc cctgccctgc
     6121 accgcttacc ggaaaaaaaa cgtcgggcaa ttctcagcgc cttacgtctg gcgcaggagc
     6181 tgggcgcgga gacggcaaca ctttctgatc cagcggaaga aaaagcagta gtgcgttatg
     6241 cccgtgaaca taatctcggc aagattattc tcggtcgccc ggcctcgcgc cgctggtggc
     6301 gtcgggaaac gtttgctgac cgactggcgc gcatcgcccc cgatctcgat caggtgctgg
     6361 tcgcgcttga tgaaccaccc gcccgcacga ttaacaacgc gccggatagc cgctctttta
     6421 aagacaagtg gcgggtacag attcagggat gcgtggttgc cgccgcgtta tgcgccgtta
     6481 tcactttaat tgccatgcag tggctgatgg cgtttgatgc cgccaacctg gtgatgctgt
     6541 atctgcttgg cgtggtggtg gtggcgctat tttatggacg ctggccttcg gtggttgcta
     6601 ccgtcattaa tgtggtgagt ttcgatctct tttttatcgc cccacgcggc acgctcgccg
     6661 tctctgatgt gcaatatctg ctgaccttcg cagtgatgtt aaccgtcggg ctggtgatcg
     6721 ggaaccttac tgctggcgtg cgttatcagg cgcgggtagc ccgttaccgc gagcaacgca
     6781 cacggcactt atatgaaatg tcgaaagctc tggcggtggg ccgcagtccg caggacatcg
     6841 ccgccaccat cgaacaattt attgcctcca cgtttcatgc ccgcagtcag gtgttgttgc
     6901 ccgatgacaa cggtaaattg cagccgttaa cacatccgca aggaatgacg ccatgggacg
     6961 ataccatcgc gcagtggagt tttgataaag gcctgcctgc gggcgcgggc accgacacgt
     7021 tacccggtgt accgtaccag attttgccgc taaaaagcgg cgagaaaacc tacgggctgg
     7081 tggtggtgga gccggggaat ctgcgccagt tgatgatccc ggaacagcag cgcctgctgg
     7141 agacgtttac gctgttagtc gccaatgccc ttgagcggct gacgctaacc gccagcgaag
     7201 aacaggcgcg gatggcaagc gaacgtgaac agatccgcaa cgccctactg gcagcgcttt
     7261 cgcatgattt acgcacgccg ctcacggtgc tgttcggtca ggcagaaatc ttaacgctcg
     7321 atctggcaag cgaaggatcg ccccacgccc gccaggccag cgagattcgt cagcatgtgc
     7381 tgaacactac ccgactggtg aataatctac tggatatggc gcgaattcag tccggcggct
     7441 ttaatttgaa gaaagagtgg ttaacgctgg aagaagtggt cggtagcgcg ctgcaaatgc
     7501 tggaaccggg tttatcgtcg cccatcaatc tttctctgcc agaaccgctg accttaatcc
     7561 acgttgacgg gccactcttt gaacgggtgc tgattaatct gctggagaac gcggtgaaat
     7621 atgcgggtgc gcaggccgaa attggtatcg atgcccacgt tgagggcgaa aatctacaac
     7681 tggatgtctg ggataacggc cccggtcttc cgccaggcca ggagcagacg atatttgata
     7741 agtttgctcg cgggaataaa gagtcggcag taccgggggt agggcttgga ctggcaattt
     7801 gtcgggcgat agtggatgta cacgggggca ctattaccgc gttcaaccga ccggaaggtg
     7861 gtgcctgttt tcgtgttaca cttccccagc aaactgcccc tgaacttgaa gaatttcatg
     7921 aggatatgtg acaaacgttc tgattgttga agatgaacag gctattcgtc gctttctgcg
     7981 cacggcgctg gagggcgacg ggatgcgcgt ctatgaggcc gaaacgctgc aacgcggctt
     8041 gctggaagcg gctacccgta agccagattt gattattctc gatctcggcc tgcccgatgg
     8101 tgatgggatt gagtttatcc gcgacctgcg ccagtggagc gcggtgccgg tgattgtgct
     8161 ttccgcacgc agcgaagaga gcgacaaaat cgccgcgctg gatgccggag cggatgatta
     8221 tctgagtaag ccgtttggca ttggcgaatt gcaggcccgt ctgcgcgtcg ctttacgccg
     8281 ccactccgct accgccgcgc ccgatccgct ggtgaaattt tccgatgtta ccgtcgattt
     8341 agccgcccgc gtgattcacc ggggtgagga agaggtgcat ctcacaccaa ttgagttcca
     8401 cctgctggcg gtgctgctca acaatgccgg aaaagtactc acccagcgcc agctccttaa
     8461 ccaggtgtgg gggccaaacg cggtcgaaca cagtcactat ttgcgtattt atatgggaca
     8521 tctgcgacaa aaactggaac aggatcccgc ccgcccacgc catttcatta ctgaaaccgg
     8581 tattggctat cggtttatgc tttgaatatt aattttaata cagcctgcct tttattaatt
     8641 aaagccgtaa taataaatac ggctttttat cttaaacaac acacaaaaat aacaattcaa
     8701 tattttatat tactgagtaa aaagctcatc attaaataaa ttaagattga tcatttttta
     8761 ttgatcacct tcacagttca accgtatttc ctggatagaa tatcttcacc ttcattcaca
     8821 tcaggaaagg taaattaaat ggaaaataac agccgcacta tgccccatat aaggcggaca
     8881 actcatatta tgaagtttgc tcatcgcaat agcttcgact ttcacttctt caatgcccgt
     8941 tagtctaccg actaagggca cttcagcgta caggtcttcc tgactctctg tattacaggc
     9001 atatgcctgt attccgcagt gctcattctc tgttaaccct tgtattatca gccaccggac
     9061 tggtaagggt ttctgcattc tgaaaaaagc aatctacctg atttatttat cagcggggta
     9121 actttgcttt tttccggcac gatcgatttc tcattcgaga aattgaggac ctgctattac
     9181 ctaaaataaa gagatgaaaa atgtcaaaat taaaaattgc ggttagtgat tcttgcccgg
     9241 actgttttac cacgcagcga gaatgtatct acattaatga aagtcgtaat atcgatgtgg
     9301 cggcaatcgt tttatcgctc aacgatgtta catgcggaaa actcgatgaa atcgatgcca
     9361 cgggttatgg catcccggta tttattgcta ctgaaaatca agaacgtgta cccgcagagt
     9421 atttgccctg tatttcgggt gtctttgaga attgcgaatc gcgacgagaa ttttatggtc
     9481 gtcagttaga aaccgctgcc agccattatg aaactcaact gcgcccacct ttcttccgcg
     9541 cactggtcga ttatgtcaat caaggtaaca gcgcgtttga ttgccctggt catcagggcg
     9601 gcgaattttt ccgtcgccat ccggcgggga atcagtttgt ggaatacttt ggtgaggcgc
     9661 tgttccgttc cgacttgtgc aacgcagacg tagcaatggg tgatctgctg attcacgaag
     9721 gcgcgccatg cattgcacag caacatgcgg caaaagtgtt caatgccgat aaaacatact
     9781 tcgttctaaa tggcacttca tcttctaaca aagtggtttt aaacgccctg ctgacaccgg
     9841 gtgatctggt gctgtttgac cgcaataacc acaaatctaa ccaccacgga gcgttgctac
     9901 aggctggtgc aacaccggtt tatctggaaa ccgcacgtaa cccgtatggc tttatcggtg
     9961 gcattgatgc gcactgtttt gaagaaagtt acctgcgtga gctgatcgcg gaagtcgcac
    10021 cgcagcggac aaaagaggct cgtcctttcc gcctcgccgt tattcagcta ggcacctacg
    10081 acggtacgat ttataacgcc cgccaggtgg tggataaaat tggtcatctg tgtgactaca
    10141 ttctgtttga ctccgcatgg gtcggctatg agcaatttat cccgatgatg gctgactgtt
    10201 caccgctgtt gctggatctt aatgagaacg atccgggcat tctggttacg caatctgtgc
    10261 ataaacagca ggctggtttt tctcaaactt cacaaatcca taaaaaagac agccacatca
    10321 aagggcaaca gcgttatgta ccgcacaaac gcatgaacaa cgcctttatg atgcatgcct
    10381 ccaccagccc gttctatccg ctgtttgccg cactggatat caacgccaaa atgcatgaag
    10441 gtgtcagcgg tcgtaatatg tggatggatt gtgtggtaaa tggcattaat gcccgcaagc
    10501 tgatcctcga taactgtcag catattcgtc cgttcgtacc tgaactagtg gatggtaaac
    10561 cctggcagtc gtatgaaaca gcgcaaattg cggttgatct gcgcttcttc cagtttgtac
    10621 caggggaaca ctggcactct tttgaaggct atgcagagaa tcaatacttt gtcgatccat
    10681 gcaaactgtt gctgacaacc ccaggttttg atgcacgtaa cggcgaatat gaagcgttcg
    10741 gtgtacccgc gacgattctt gctaacttcc tgcgcgaaaa tggcgtagtg ccggaaaaat
    10801 gcgatcttaa ctccatcctc ttcctgctga ctccggcaga agatatggcc aaacttcagc
    10861 aacttgttgc cctgctggta cgcttcgaaa aactgcttga gtccgacgcg ccattagcag
    10921 aagtgctgcc ttccatctac aaacagcatg aagagcgcta cgccggttat acccttcgtc
    10981 agttatgcca ggaaatgcat gatttgtatg cccgtcacaa cgtgaaacaa ccgcaaaaag
    11041 agatgttccg taaggaacac ttcccacgcg taagcatgaa tccacaagaa gccaactacg
    11101 cctattcacg cggtgaagtg gagctggttc gtctgccgga tgccgaaggc cgtatcgctg
    11161 ccgaaggtgc gcttccttat cctccgggtg tgctgtgtgt tgttccgggt gaaatctggg
    11221 gtggtgctgt tttgcgttac ttcagcgctc tggaagaagg gatcaacctg ctgccaggtt
    11281 ttgcaccgga gctgcagggt gtctatatcg aagaacatga tggtcgtaag caagtttggt
    11341 gctatgtcat caagcctcgt gatgcgcaaa gcaccctgtt gaaaggggaa aaattatgag
    11401 tcaggctaaa tcgaacaaaa tgggcgtcgt tcagttaacc atactgacga tggtcaacat
    11461 gatgggctcc ggtatcatca tgctgccgac aaagcttgcc gaagttggga caatctcaat
    11521 tatctcctgg ctggtgacag ccgtaggctc aatggcactg gcatgggcat tcgcaaaatg
    11581 cggtatgttc agccgtaaat caggcggtat gggcggttat gcggagtatg ctttcggtaa
    11641 gtccggcaat tttatggcga actacaccta cggtgtctcg ctgctgattg ctaacgtcgc
    11701 gattgctatt tcggcggttg gttacggcac cgaactgctc ggcgcgagtt tgtcgccagt
    11761 gcagattggt cttgcgacca tcggagtgct gtggatttgt accgtggcta actttggtgg
    11821 tgcgcgcatt accgggcaaa tcagtagcat tactgtgtgg ggagtcatta ttccggtcgt
    11881 cggtctgtgc attattggct ggttctggtt tagtccgacg ctgtacgcta actcatggaa
    11941 cccgcaccat gtgccgttct ttagcgctgt aggttcttcc atcgccatga cgttgtgggc
    12001 tttcctcggt ctggagtcag cctgtgccaa cgccgaagta gtggaaaacc cggaacgtaa
    12061 cgtgccgatt gcagttcttg gcggtacttt aggtgcggcg gtgatttata tcgtctccac
    12121 caacgtgatt gccgggattg tgcctaatat ggagctggca aattcaacgg caccatttgg
    12181 cctggctttc gcacagatgt tcacaccaga agtgggtaaa gtcattatgg cgctgatggt
    12241 gatgtcctgc tgcggttcac tgcttggctg gcggttcact gcttggctgg cagttcacca
    12301 ttgcccaggt gtttaaatct tcatctgatg aaggctactt ccctaaaatt ttctcccgtg
    12361 taaccaaagt ggatgcaccg gtgcagggaa tgttgaccat tgtgattatt cagagtggat
    12421 tggcactgat gaccattagc ccgtcactga acagccagtt caacgtgctg gttaacctgg
    12481 ccgtggtgac caatatcatt ccgtatattc tgtcaatggc ggcattagtc attattcaga
    12541 aggtcgctaa tgtgcccccc tcaaaagcga aagtagcaaa ctttgttgcc tttgttggtg
    12601 cgatgtacag tttctatgcg ctgtactcat ccggggaaga agccatgctg tacggttcta
    12661 tcgtgacctt ccttggttgg acactgtatg gtctggtatc accatgcttt gaactgaaaa
    12721 ataaacacgg ttaataaaac aaagtaaaaa agggcgattg aatgatcgcc ctttctgttt
    12781 gttggcaaat agttcgttat ttatgccgca tccggcagat gtagggtcta aacgcgatcg
    12841 aacacagcaa ctatttgcgt aattatatgg ggcatctgcg acaaaaactg gaacaggatc
    12901 cggcccggcc tcgccatttt attactgaaa ccggtattgg gtatcggttt atgctttgaa
    12961 aaaagtggca atgtatggat aaagtcattt tttattcaaa tataaggaac ttaatattta
    13021 aaaaatgttc catacaattc ctcatcataa atgacaccgt agcacacaag gagcaagtag
    13081 cgatgcgtga aatgaatcag ttagtaaata ctgaagattc agcctggcca ataatccaga
    13141 actggttaaa agacgccaca aaccataccg aactcttacc ggttaataaa aatttagccg
    13201 aaaccgcact ttatcaatta caggtgacaa caaaatcacc gatgggtgcg cttgtctatg
    13261 gctccggagg tctgctgatt gataatggtt ggttacgcat agcaggatct ggtcaccccc
    13321 ggttgccacg agatccagta agttggacac aacgccctga attcgcaggc gtgcgggctt
    13381 tacccatcgc tgacgatgtc gcagggggaa tttttgctct taatggtggc gatcttgggg
    13441 aagatactgg ctgcgtttat tattttgcgc cagatacgct gaattgggaa agtctggaag
    13501 ttggatattc tgagtttctt cagtgggcat tatccggtga tttagatacc ttctatgaaa
    13561 atgtacgatg gcagcaatgg cgagaagacg taataaaatt atcggcaacg gaagccttca
    13621 cgttctaccc tttcttatgg gtacaaagtg aagaagcaag aacaagaaaa gttatttcgc
    13681 ttactgaact ctgggaaatg cagtatcaaa tgaaagaaac attcacgcaa taagacatgt
    13741 tcaggtccgg gtttcattcc cggactcact attttaatgt gtatttatcg ctttcaattc
    13801 ttgctggcaa ttttctgact ggcagcgtcg taactcaata atcccgacat gcatcatcga
    13861 gccaaaaaat ccgctttcgc tgacataatc ctcattgact atcggtcgag tgccgggctt
    13921 gccctggcaa acccgcataa aaaatgaggt gtagcattgc caaccgggat ttaaaccgac
    13981 cttttcttgt gctgacatat tatgaagata agtaagttct ttttcgttcc cgcctgacaa
    14041 ctgccagcgg cgggtattat caggtaagtt atcaccacgg caatttgtct tacaccggga
    14101 aggtgcaata tttaccgcaa tgctacccgt taatcttctg gttttatctt taggggtcag
    14161 taaccagtcg ccagctaatg atgattgttc aggttgggcg catgcagtca gcagtaatgt
    14221 ggcggtaatt agtgacacta tgacgaccag actcctgttg gtcttcattg ggatttcctt
    14281 gagctactca gtttgttgac aaagtgttcg ttgtttttgc cggatgcggc gtgaacgcct
    14341 tatccggcct acaaaatctc gtaaattcaa tatattgcac catcctcgta ggcctgataa
    14401 gcgtagcgca tcaggcaatt ctgtgtttgt catacgtaaa aaagggcgat cttccgaccg
    14461 ccctttttct tatttaatgt gtttacgcgt ttttcagaac ttcgctaaca atctcaaccg
    14521 cttctttctc aatctgcttg cgatgttctt caccgaggaa gctttcgcag tagatcttat
    14581 atgcgtcttc cgtgcctgac ggacgcgcgg cgaaccagcc gttgtcagtc atcactttca
    14641 gaccgccgat agaagcacca ttgcccggtg ccgccgtcag gcgcgcggtg atcgggtcgc
    14701 ctgccagggt gctggcgctc accatttccg gagacagctt agacagcgcc gctttttgtg
    14761 cggaagtcgc agctgcctgc aaacggttgt agctcggcgc accaaagcgt tttgccagtt
    14821 cgttgtagtg ttcctgcggg ttcttaccgg tgacagcggt gatttccgcc gccagcagac
    14881 acatgatgat gccgtctttg tcggtggacc acggcgtgcc gtcgaaacgc aggaaggaag
    14941 cccctgcgct ctcttcgccg ccaaagccga agctgccgtc gaacagacca tcaacaaacc
    15001 atttgaaacc taccgggact tctaccagct tgcggcccaa gtcattgacc acacggtcga
    15061 tcatcgcaga agaaaccagc gttttaccga cagcaacatc tttgccccac tgcggacgat
    15121 gctggaacag gtagttgatc gccaccgcca ggtagtggtt cggattcatc aaacctgccg
    15181 gagtgacgat accgtgacgg tcataatccg ggtcgttagc aaacgccaga tcgaacttat
    15241 cacgcagtgc cagcaggccc gccatcgcac actcggagga gcagtccata cggatcgcgc
    15301 cgtctttatc aaggtgcata aagcggaagg tttgatcgac ctgatcgtta acgatggtca
    15361 ggttgaggtt gtaatactcg ccaatacgct tccagtattc gataccggaa ccgcccagcg
    15421 gatcaacgcc cagcgtcagg cccgctttct gaatcgccgc catatcaacg atatcggcca
    15481 gaccttccac aaacggctgc accagatcct gctctttcac atgaccggat gccatcgctt
    15541 cgtcgaggga gatacgcttc acgcctttca ggccatcggc cagcagtgcg ttggccctgt
    15601 cttccaccac tttggtgacg ttggtatcag ccgggccacc atttggcgga ttgtacttga
    15661 taccaccatc ttccggcggg ttatgggacg gtgtaatcac gataccgtct gccagcggac
    15721 cacctttttt attgtgaacc aggatggcat tggaaacggc aggcgttgga gtgaagccat
    15781 tgttttcctg cacaatgaca tcaacgccgt tcgctgccag cacttccagt acggaaatga
    15841 acgcaggctc ggacagggcg tgagtatctt tacccacata gcaagggcca gtgatgccgt
    15901 ttttcgcacg ttcttcagca attgcctgag cgatcgccag aatgtgcggc tcgttaaagc
    15961 tgtggcgcgc tgcactgcca cggtgaccgg aagtaccgaa tttcaccgcg tgctccgcat
    16021 tccctgcttc tggtttcagt acataatatt gcgccgtcag ttgggcgacg ttaatcaaat
    16081 cactctgttg tgcaggttgg cctgcacgat tgtggattgc cattgctttg tcctttgtct
    16141 gcaacgtttt agatagttcc gcaaaccttc tcaatcaatt ccgccgggaa ttgcatcgac
    16201 tgcatgatgt gttcgatcat gctgcattta cggccggtgt tggtgttggt gatcacccaa
    16261 tacggcgtgc ctggcacatg tttcggcttg gtctgattac catttttcag cagcgtttgt
    16321 tcatctgccg caaagtaaac gcgtgtacga ccgtgcaacg attccgttgc ttcggcaaac
    16381 gcctgggcgt caagagaata tagtgtagac aacagcagca taaagcgatt gaccgctcgc
    16441 ttttgctctg cgtattcgtc agaaagcaga agttcacgca ttgcgcgaac cttgtcttta
    16501 atcgttttga ccggcttcgc ttcggcgata gcaggtgacg caacgcgaac ctctttcgtc
    16561 accggagcag caggctgtga tgcggcggaa aatttcaaca tacgccgtaa aatgtcggat
    16621 gcgctctcgc cgatatgctt agtgtggctg gcaatatagc tgtagagttc atcatcaact
    16681 tcaatcgttt tcatcttaat ccagtgcagt gtcttagctg aatacaagtc gccaagagta
    16741 tatgaataaa tcccggcagc ggatagcgtc aagcctggct tgcagaaaaa ctcggaataa
    16801 accttatttg ttgcagccct gtggcacaat ggtcaacata ataccctaac ccgacaacgc
    16861 gaaaaaaaga actttgccat gaaattgaat atccgcgcgc aaactgcaca aaaccagcac
    16921 aataattctc ccatcgttct tgtccatggt ctgtttggta gcctcgacaa ccttggcgta
    16981 ctggctcgcg atctggtaaa cgatcacaat atcatccagg ttgatatgcg taaccacggt
    17041 ctttcaccga gagatccggt aatgaattac ccggcgatgg cgcaggatct tgttgatact
    17101 ctggatgcac agcagatcga caaagcaaca tttatcggtc actccatggg cggtaaagcg
    17161 gtaatggcac ttacggcact ggcccgcgat cgcatcgata aactggtggc gatcgatatc
    17221 gcaccggtcg actatcacgt acgccgtcat gatgagattt tcgcggctat caacgcggtc
    17281 agtgaatcgg acgcacaaac tcgccagcaa gcagcagcaa taatgcgcca gcatcttaat
    17341 gaagaagggg tgattcagtt tctgttgaaa tcttttgttg acggggagtg gcgctttaac
    17401 gtgccggtat tgtgggatca gtatccgcat attgtgggtt gggagaaaat cccggcatgg
    17461 gatcaccctg ccctgtttat ccctagcggc aattctccgt atgttagcga gcagtaccgt
    17521 gatgatttac tggcacaatt tccacaggca cgggcgcatg tgattgcagg cgcgggtcac
    17581 tgggtccatg ctgaaaaacc ggatgcggta ttacgcgcta tccgtcgcta tctcaatgat
    17641 taacgcaact gattaaaaac ccagcgtccg cgtcgctttc cgcgcgtggg cgttggcgtg
    17701 actcatcgcg ctgatgtatt atggcgcgct atccatccgg gcagaggcct ggctgattgt
    17761 ttcccccgaa gtcaccaaga tcatggccaa agaacaaacg gaccgtacga cattagatct
    17821 gttcgcgcac gagcgtcgac cgggacgacc gaaaactaat ccgctttcgc gcgatgaaca
    17881 gctgcgtatt aataaacgca accagctaaa acgcgacaaa gtacgtggcc ttaagcgtgt
    17941 cgaactgaag ctgaacgcgg aagctgtcga ggcgctgaac gagctggcgg agtcgcgcaa
    18001 tatgagccgt agcgaactga tcgaagagat gttaatgcag caactggcgg cgctgcgtag
    18061 tcagggcatc gtttaaattt ccactttcat gtagcacagt gtgcagtcct gctcgtttgc
    18121 tgattccgaa agactgcctg ttctgctatg attgccttta tccgtgggca attttccacc
    18181 cccatttcaa taagtttcaa gaggttattt cactcatggc tatcactggc atctttttcg
    18241 gcagcgacac cggtaatacc gaaaatatcg caaaaatgat tcaaaaacag cttggtaaag
    18301 acgttgccga tgtccatgac attgcaaaaa gcagcaaaga agatctggaa gcttatgaca
    18361 ttctgctgct gggcatccca acctggtatt atggcgaagc gcagtgtgac tgggatgact
    18421 tcttcccgac tctcgaagag attgatttca acggcaaact ggttgcgctg tttggttgtg
    18481 gtgaccagga agattacgcc gaatatttct gcgacgcatt gggcaccatc cgcgacatca
    18541 ttgaaccgcg cggtgcaacg atcgttggtc actggccaac tgcgggctat catttcgaag
    18601 catcaaaagg tctggctgat gacgaccact ttgtcggtct ggctatcgac gaagaccgtc
    18661 agccggaact gaccgctgaa cgtgtagaaa aatgggttaa acagatttct gaagagttgc
    18721 atctcgacga aattctcaat gcctgatgtg atgcggcgta gactcatgtc tacgccgtat
    18781 taatagataa tgccaatcaa aataattgct acaaatttgt aacttttgct gttgtacctg
    18841 tacaatgtcc cggtgttcaa gtggccttgc cgttgtaaat gtaagctgtg ccacgttttt
    18901 attaacaata tttgccaggg acttgtggtt ttcatttagg cgtggcaatt ctataatgat
    18961 acgcattatc tcaagagcaa attctgtcac ttcttctaat gaagtgaacc gcttagtaac
    19021 aggacagatt ccgcatgact gataacaata ccgccctaaa gaaagctggc ctgaaagtaa
    19081 cgcttcctcg tttaaaaatc ctggaagttc ttcaggagcc ggacaaccat cacgtcagtg
    19141 cggaagattt atacaaacgt ctgatcgata tgggtgaaga aattggtctg gctacggtat
    19201 atcgcgtact gaaccagttt gacgacgctg gtatcgtcac ccgccacaat tttgaaggcg
    19261 gtaaatccgt atttgaactg acacagcaac atcaccacga tcacctgatc tgcctcgact
    19321 gcggcaaggt tatcgaattt agtgatgatt ccatcgaagc gcgtcagcgt gaaattgccg
    19381 caaaacatgg cattcgcctg actaaccaca gtctctatct ttacggtcac tgtgccgaag
    19441 gcgattgccg cgaagatgaa catgcgcacg aaggcaaata agccagcctg aatgagaaaa
    19501 agccaacctg cgggttggct tttttatgca agggaaataa gaaaagcgag agttacagct
    19561 ctcacttatt tgttattact gcgaatttcc tgccaaactt tatcacaatc ggctttcacc
    19621 gcctgatcat ttccggtttg cgttgcacgc agacactgct gataatccag tacgcggaca
    19681 ctttcctggt cggcaaaatg ctgatgttgt ttctctttct tcagcacgtt taacacgctc
    19741 tggcaggctt caattttttc tggcgaacct tgtgcggtgt tgatacaggc gctgtatgcc
    19801 tctttcagac gactgtcttc ctgtggcgcg gttgattgcg cacaagctac cagccccgat
    19861 gccattatgg cgatgagaat cagttttttc atagcaaatt cctcaaacgt gcggcaggca
    19921 caaaacctgc cgcgtcgggc atcagaagat ggtgaatggt gcgattacca taaatttcac
    19981 gtcacgctca tcctggaaga tgttgccgta accaccgccc cagcttggga tgtcggagtg
    20041 gttgtcgtat tcggtgaagt gcagtttgaa catcgtgcct ttggcgcgac cgtcctgaat
    20101 ggtgtagacc gcatccaggc tgtatgcaga ctcttcaata gtccggtttt tgtcgtagta
    20161 cgcatccgga ttgctctgcc aggtcgcagg tttagcatcc catgcgtaaa cgtaggaagc
    20221 gccgatggcg aagcctggaa gattccagtt tttcaggtca tacatcgcac cgaagaagac
    20281 cgctttttcg ccgttagcgt tgaagtcgga acggttatcc caccagatat ccaggcggcc
    20341 gttggaggaa gcgtaggctg gagtcatacg ttgcaggaag tatccctgct gaccgtcagc
    20401 cttaacccag gtgccttcga ggcgcaaatc cactacgtca gccgcccggt aaccaaaggt
    20461 caacgcttgc agccaggcgg tgccgtcata aaggtcgttg acgctgcgat cgtcaacttt
    20521 atcgcgcgta ccatagaact ggtagctggt ggttaacggg ctaccggcga tatcaaattt
    20581 gtagctggct ttggcaaaat attgatcgat atacccttcc gcctgaccaa atgccgcttc
    20641 cagtacgaag ttatttttga agtcgtattt cgccccaagg gagtgcagat aatcaacttt
    20701 ggtggtttta tcgttctgat aaaactcatc catttccaga tgccacggcg ctttgtattc
    20761 gttggtccac atgtaggaga aactcaacgc accagcatcg ccgtaatcaa aattcgcccc
    20821 ggcttccgcc ccctgataag tacctggcat aaagctccag tgcggcgcta acagcgtttg
    20881 accagttggc tgaatgtaac ctgccctcgc ccaaaccgga ccgtatttaa atttggccgc
    20941 agctttatac aggcttatac cgcttttgtc gccggaccag tcttcgtcat aggctttatt
    21001 actttttgaa aacgcgattt cgttcgggtg ggagctgtcg ccgttttccg ccatttcaat
    21061 cgccgtaaac acagcaatat caaggccgaa catatcagca gcataaccgg actgaaaatc
    21121 gaggttggca ttccaggtgg agtgagaaag gttggttttg tatttgtcgc cgtcggtaac
    21181 atctttacgg tcgcgttcac gctgccagta atatataccg ccggttaagg ttgaatcgtc
    21241 gatgaatcct tcggcgcgag cctccggcat tgccataaag cccgacattg ctgtaacacc
    21301 ggcgatagcc agcgccagcg tactacgttt gccactaaac gtacgcatgg gttaatcctc
    21361 tttgacgtat aaattgctgc accaaaggtg aacagcgaaa aaaataaaaa ttaaaaaagt
    21421 agcattgaga aaagtctcgc tgactacagg aatagactat ttttcgcgac gcgaattatc
    21481 aatctctttc tgtaaccaga atgtaagaac atgagcaacc gcacatattt tgatgatttt
    21541 tgttacaagg cttaagtttg cggttgaaag gcttgcagaa gaataaaagc gtaaatttcc
    21601 agcaagatga aagcggttac attttattta attatggttt gtgattttaa atttatttta
    21661 tggataaatt gcgaagcgga attaattcgc gaagaaaagc agaaaaaacg ccgcagagtg
    21721 cggcgtttgg gattgtttgc tatttcttgc cggatgcgac gtaaatgcct cacccggcct
    21781 ggtagaactt aaaattactc gcctactttc gcccaggtat cacgcagccc aacggtgcgg
    21841 ttaaataccg gtttttccgc tgtggaatgg cggctgtcga ggcagaagta accttcacgc
    21901 tcaaactgga atgctttacc cgcaaccgca tctttcagcg acggttcagc aaagccctgt
    21961 ttgatcacca gcgattccgg gttaatcacc gacaggaaat catccgcagc acctgggtta
    22021 ggcacgctga acagacggtc gtacagacgg atttcaaccg gcagcgcatg tgccgcgctc
    22081 acccagtgaa taacaccttt gactttacga ccatctgccg gatctttgct taaggtgtcg
    22141 gcgtcataag tacagaagat ggtggtgata ttgccttcgg catctttctc cacgcgttct
    22201 gccttaatga cgtaagcatt acgcagacgc acttctttac ccagcaccag acgtttgtac
    22261 tgcttgttag cttcttcgcg gaaatcggcg cgatcgatcc aaatctcact gctaaacggc
    22321 acctggcggc tacccatttc cggtttgttc ggatggttcg gcatggtaac catttcgcct
    22381 tcgccctgat agttttcgat aaccagtttc accggatcga taaccgccat tgcgcgcggg
    22441 gcgttttcgt tgagatcttc acggatgcag gattccagcg acgccatctc aatggtgttg
    22501 tcctgcctgg tcacgccgat gcgtttgcag aactcacgaa tagaagcagc agtgtaacca
    22561 cgacgacgca gaccggaaat ggtcggcata cgcgggtcat cccagccttc aacgtgcttg
    22621 tcggtcacca gcaggttcag cttacgcttg gacatcacag tgtattccag attcaggcgc
    22681 gagaattcgt actggcgcgg gtgaacagga atggtgatgt tgtccagcac ccagtcgtac
    22741 aggcgacggt tgtcctggaa ctcaagcgta cacagagagt gcgtaatacc ttccagggca
    22801 tcgctgatgc agtgggtgaa gtcgtacatc gggtagatgc accacttgtt gccagtctgg
    22861 tggtgttcag caaatttaat gcggtacagc accggatcgc gcatcacgat aaacggtgaa
    22921 gccatgtcga ttttcgcacg caggcaggct ttaccttctt caaaaccacc ggcacgcatt
    22981 ttttcgaaca gcgccaggtt ctcttcaacg ctgcggtcgc ggtacgggct gtttttaccc
    23041 ggttgcgtca gggtgccgcg gtattcgcgg atctgttccg gcgtcagttc atcaacgtac
    23101 gccaggcctt tattgatcag ttcgatcgca taggcgtgga gctgatcaaa ataatcggag
    23161 gagtaacgga cgttaccaga ccagtgaaaa cctaaccact ctacgtcgtt tttgatcgac
    23221 tcaacatact cgatatcttc ttttaccggg ttagtgtcgt cgaaacgcag gttgcactgg
    23281 cctttatagt cctgggcgat cccgaagttc aggcagatag atttcgcatg gccaatatgc
    23341 agatagccat tcggctccgg cgggaaacgg gtgtgtactg tggtgtgctt accactggcc
    23401 agatcttcat cgatgatctg acggataaag ttagtcgggc gggcttctgc ctcactcatc
    23461 gtggattcct caaagcgtaa acaacgtata acggcgtatg atcttataag cggaacaggc
    23521 tgacaactgt tagtttttta aaattgataa tctaacaagg attatgggga tgattgatga
    23581 aaaaaaaagc ggcagagaag atctccaccg cttgtcattg ttggatgcga cgctcaagcg
    23641 tcgcatcagg cataaagcag attacttttt gatttcatac agcggtgttt gacccgccac
    23701 aacatggccc tgagctttaa tgatcaagcc actgaaatcg tcgatattgc tgcaaaccac
    23761 cgggctaatc atcgagcggg cgttagcgtt caggtaatcc agatccattt ccagaatcgg
    23821 ttgccctgcg cttacctgcg caccctcttc caccagacgt ttaaagcctt taccttccag
    23881 cgctacggtg tcgataccca tatggacgac gatctccgcg cctttttcgg tttccaggca
    23941 gaacgcgtgg ttggtgttga agattttcac gattgtccct gcggctggtg atacgacgat
    24001 tttatctgtc ggtttcaccg ccacaccgtc acccaccgct ttgctggcga atgcttcgtc
    24061 aggaacctga tccagtgcca cgacatcacc ggtaatcggc gataccagct ccgcgataga
    24121 taccgcgttt ggtacagcct gcggttttgc tacaggcgcg gcagttgacg gagttgcttc
    24181 agctgacgca gcggctaccg gaccacgggc aacgactttc ttcatcgcat cgccgatgga
    24241 ttctgctttc gcgccaacaa tcacctgaat agtctgtttg ttcagtttca ctacaccaga
    24301 agcacccaga cgtttacaca tcgtatcgtt gacgcgggca gagtcagcca cggtcaggcg
    24361 cagacgggtg atacaggcgt caattgcttt caggttgtca gtgccgccaa ccgcagcaat
    24421 atagttggtc gccagttgat tgaggccttc ttcagtgttg ctgttggctt cttcagtaac
    24481 gatctcatct tctttatctt cacgacccgg cgttttcagg ttgaacatgc ggataaccaa
    24541 actgaacacc acgaagtaga tagcgaagaa gacaacaccc atcaccagca gcatccagac
    24601 gttctggctg gcggccggca ggttatacat caacgcgtag tcgatagccc ccgcagagaa
    24661 agagaagcca gcatggatac ccagcagtgt tgccacaaac aggctgatac cggtcagcag
    24721 tgcgtgcagg aggtacagca gcggtgcaag gaacatgaac aggaattcca gcggctcagt
    24781 cacaccggtc aggaacgcag taacagcaac agaaagcagc atcccgccaa ccatcggacg
    24841 acgctctttc ggtgctgcga agtacatcgc cagcgccgca cccggcagac cgaacatcat
    24901 aatcgggaag aagccggaca tgaacatccc cgcggtgccg tcaccggcat agaagcggtt
    24961 gatatcaccg tggaaaaccg tacccgccgc gttggtgaat tcaccaatct ggaaccaggc
    25021 gatggtgttc agcacctgat gcagaccggt tgggatcagc agacggttga tgaaaccaaa
    25081 gataccggaa cccagcgcgc ccgcagaaac gatccactcg cctcctgcat ggatagcgtg
    25141 ctgtaccggc ggccagacgt aaccaaaaat ggccgccagc accaggcaga agaagccggt
    25201 ggcaatcggc acaaagcgtt tgccgccgaa gaagctcagg aagtccggca gtttaatatc
    25261 ggaccaacgg ttataggctg cgccaccaac cagaccggta atgatacccg ccagtacacc
    25321 catgtttatt tctgggttga tggtcaccat cgctttggtt aacacaaagt aacctaccgc
    25381 acccgccagc gccgccgcac ctgcgctgtc tttcgaccag ctggatgcca caccgatggc
    25441 gaagattaat gcgaggttat caaaaatcgc accgcccgcc tgggcaataa acgcaacgtt
    25501 aagtaaatct ggctgaccga atcgcagcaa cagtgccgcc accggcagca ccgcgatagg
    25561 gagctgtaac gccctaccga gtcgctggaa aaaacctaaa atattcatct tattccccct
    25621 acgagaaccc tatttggctc gtttaaagcc gtatttttat tttgctgcaa attgtactgc
    25681 cgatgttctg taatcagatt gttagatcat ctgctacaga gtgtgtgaaa atttaattcg
    25741 tatcgcaaat taaacgcgtg tcttttgtga gttttgtcac caaatatcgt tatcatcact
    25801 cccttttact ggctaaacca gaaaacttat tttatcattc aaaaaatcag gtcggattga
    25861 cgcctgtctg cgcaaatcca agttacgctt aaagatgcct aatccgccaa cggcttacat
    25921 tttacttatt gaggtgaata atgagactga tccccctgac taccgctgaa caggtcggca
    25981 aatgggctgc tcgccatatc gtcaatcgta tcaatgcgtt caaaccgact gccgatcgtc
    26041 cgtttgttct gggcctgcca actggcggca cgccgatgac cacctataaa gcgttagtcg
    26101 aaatgcataa agcaggccag gtcagcttta agcacgttgt caccttcaac atggacgaat
    26161 atgtcggtct gccgaaagag catccggaaa gctactacag ctttatgcac cgtaatttct
    26221 tcgatcacgt tgatattcca gcagaaaaca tcaaccttct caacggcaac gccccggata
    26281 tcgacgccga atgccgccag tatgaagaaa aaatccgttc ttacggaaaa attcatctgt
    26341 ttatgggcgg tgtaggtaac gacggccata ttgcatttaa cgaaccggcg tcttctctgg
    26401 cttctcgtac tcgtatcaaa accctgactc atgacactcg cgtcgcgaac tctcgtttct
    26461 ttgataacga tgtcaatcag gtgccaaaat atgccctgac tgtcggtgtt ggtacattgc
    26521 tggatgccga agaagtgatg attctggtgc tgggtagcca gaaagcactg gcactgcagg
    26581 ctgcagttga aggttgcgtg aaccacatgt ggaccatcag ctgtctgcaa ctgcatccaa
    26641 aagcgatcat ggtgtgcgat gaaccttcca ccatggagct gaaagttaag actttaagat
    26701 atttcaatga attagaagca gaaaatatca aaggtctgta attgttatcc ctgccctggc
    26761 tccttgctca gggcaatatt ttttaaaatc gggggtcaga atgtatgcat taacccaggg
    26821 ccggatcttt accggccacg aatttcttga tgaccacgcg gttgttatcg ctgatggcct
    26881 gattaaaagc gtctgtccgg tagcggaact gccgccagag atcgaacaac gttcactgaa
    26941 cggggccatt ctctcccccg gttttatcga tgtgcagtta aacggctgcg gcggcgtaca
    27001 gtttaacgac accgctgaag cggtcagcgt ggaaacgctg gaaatcatgc agaaagccaa
    27061 tgagaaatca ggctgtacta actatctgcc gacgcttatc accaccagcg atgagctgat
    27121 gaaacagggc gtgcgcgtta tgcgcgagta cctggcaaga catccgaatc aggcgttagg
    27181 tctgcatctg gaaggtccgt ggctgaatct ggtaaaaaaa ggcacccata atccgaattt
    27241 tgtgcgtaag cctgatgccg cgctggtcga tttcctgtgt gaaaacgccg acgtcattac
    27301 caaagtgacc ctggcaccgg aaatggttcc tgcggaagtc atcagcaaac tggcaaatgc
    27361 cgggattgtg gtttctgccg gtcactccaa cgcgacgttg aaagaagcga aagccggttt
    27421 ccgcgcgggg attacctttg ccacccatct gtacaacgcg atgccgtata ttaccggtcg
    27481 tgaaccgggc ctggcgggcg cgatcctcga cgaagctgac atttattgcg gtattatcgc
    27541 tgatggcctg catgttgatt acgccaacat tcgtaacgct aaacgcctta aaggcgacaa
    27601 actgtgtctg gttaccgacg ccaccgcgcc agcaggtgcc aacattgaac agttcatttt
    27661 tgcgggtaaa acaatatact accgtaacgg actttgtgtg gatgagaacg gtacgttaag
    27721 cggttcatcc ttaaccatga ttgaaggcgt gcgtaatctg gtcgaacatt gcggtatcgc
    27781 actggatgaa gtgctgcgta tggcgacgct ctatccggcg cgtgcgattg gcgttgagaa
    27841 acgtctcggc acactcgccg caggtaaagt agccaacctg accgcattca cacctgattt
    27901 taaaatcacc aagaccatcg ttaacggtaa cgaggtcgta actcaataag agaaagtatg
    27961 acaccaggcg gacaagctca gataggtaat gttgatctcg taaaacagct taacagcgcg
    28021 gcggtttatc gcctgattga ccagtacggg ccaatctcgc ggattcagat tgccgagcaa
    28081 agccagcttg cccccgccag cgtaaccaaa attacgcgtc agcttatcga acgcgggctg
    28141 atcaaagaag ttgatcagca ggcctccacc gggggccgcc gcgctatctc catcgtcacc
    28201 gaaacccgca atttccacgc aatcggcgta cggcttggtc gtcacgacgc caccatcacc
    28261 ctgtttgatc tcagcagcaa agtgctggca gaagaacatt acccgctgcc ggaacgtacc
    28321 cagcaaacgc tggaacatgc cctgttgaat gccattgctc agtttattga tagctaccag
    28381 cgcaaactgc gcgagctgat cgcgatttcg gtgatcctgc cagggcttgt tgacccggac
    28441 agcggcaaaa ttcattacat gccgcatatt caggtagaaa actgggggct ggtagaagct
    28501 ctggaagaac gttttaaagt gacctgtttc gttggtcacg atatccgtag tctggcgctg
    28561 gcggagcact acttcggtgc aagtcaggat tgcgaagact ccattctggt gcgtgtccat
    28621 cgcggaaccg gggccgggat tatctctaac gggcgcattt ttattggccg caacggtaac
    28681 gtcggtgaaa ttggccatat tcaggtcgaa ccgctgggtg aacgctgcca ctgcggcaac
    28741 tttggctgcc tggaaactat cgccgccaac gctgccattg aacaacgggt gttgaatctg
    28801 ttaaagcagg gctaccagag ccgcgtgccg ctggacgact gcaccatcaa aactatctgc
    28861 aaagccgcga acaaaggcga tagtctggcg tcggaagtaa ttgagtatgt cggtcgtcat
    28921 ctgggtaaaa ccatcgccat tgctatcaac ttatttaatc cgcaaaaaat tgttattgcc
    28981 ggtgaaatca ccgaagccga taaagtgctg ctccctgcta ttgaaagctg cattaatacc
    29041 caggcgctga aggcgtttcg cactaatctg ccggtggtac gttctgagct ggatcaccgc
    29101 tcggcaatcg gcgcttttgc gctggtaaaa cgcgccatgc tcaacggtat tttgctccag
    29161 catttgctgg aaaattaatg tgcttttata gtggcgctta ttgttgtcaa tattctgggt
    29221 agtccatgac cattaaaaat gtaatttgcg atatcgatgg cgtgctgatg cacgataacg
    29281 tcgccgtacc gggtgcagcg gaatttttgc acgggattat ggataaaggc ctgccgctgg
    29341 tgttgctgac caactatcct tcgcagactg ggcaagatct ggcgaaccgc tttgccaccg
    29401 caggtgtcga tgtacctgac agcgtgtttt atacctctgc gatggcgact gccgatttcc
    29461 tgcgtcgcca ggaaggcaag aaagcgtatg tggtgggcga aggcgcactg attcatgaac
    29521 tgtacaaagc cggtttcact attaccgatg tgaaccctga tttcgtgatt gttggcgaaa
    29581 cgagttccta caactgggac atgatgcata aagcagccta tttcgtcgct aacggtgcac
    29641 gttttatcgc caccaatccg gacacccacg ggcgcggttt ttatcccgcg tgtggcgcgt
    29701 tgtgtgcagg catcgaaaaa atctccgggc gtaaaccgtt ctatgttggt aaaccgagtc
    29761 cgtggatcat ccgcgcggca ttaaacaaaa tgcaggcgca ttcggaagaa acggtgattg
    29821 tcggcgataa cctgcgtacc gatattctgg cgggcttcca ggcaggtctg gaaacgattc
    29881 tggtgctttc tggtgtttca tcgctcgacg atatcgacag tatgccgttc cgcccaagct
    29941 ggatttaccc gtcggtcgct gaaatcgacg ttatctgaat agcaaccacg tctgcggacg
    30001 tggttggctc tgatgacaaa cgccaaactg cctgatgcgc tacgcttatc aggcctacgc
    30061 agctcctgca atatattgaa ttttcatgct tttgtaggcc ggataaggcg ttcacgccgc
    30121 atccggcatg aacaaattgc actttgtcag caatttggcc cccgtaaaat acaaacattc
    30181 aataaaaccc gctgaaaatt atcgattcat caataaatat atcctcacac cagacctttt
    30241 ttcaccaatc gacaatcacc attacgtttt ttattttttc accgccaaat cgcttgcgca
    30301 cagtgctgct ttgcggcatt tttttaaaca agcaaacaca acaagcaaca aataccagat
    30361 taacggagaa ggttatgtgt tcaatttttg gcgtattcga tatcaaaaca gacgcagttg
    30421 agctgcgtaa gaaagcactc gagctgtcac gcctgatgcg tcatcgtggc ccggactggt
    30481 ccggtattta tgccagcgat aacgccattc tcgctcacga acgtctgtca attgttgacg
    30541 ttaacgcggg ggcgcaacct ctctacaacc aacaaaaaac ccacgtactg gcggtaaacg
    30601 gtgaaatcta caaccaccag gcattgcgcg ctgaatatgg cgatcgttat cagttccaga
    30661 cagggtctga ctgtgaagtg atcctcgcgc tgtatcagga aaaagggccg gaatttctcg
    30721 acgacttgca gggcatgttt gcctttgccc tgtacgacag cgaaaaagat gcctacctga
    30781 ttggtcgcga ccatctgggg atcatcccac tgtatatggg ctatgacgaa cacggtcagc
    30841 tgtatgtggc ctcagaaatg aaatcgctgg tgccagtttg ccgcacgatt aaagagttcc
    30901 cggcggggag ctatttgtgg agccaggacg gcgaaatccg ttcttattat catcgcgact
    30961 ggttcgactt tgatgcagtg aaagataacg tgaccgacaa aaacgagctg cgtcaggctc
    31021 tggaagattc cgttaaaagc catctgatgt ctgatgtgcc ttacggtgtg ctgctttctg
    31081 gtggtctgga ttcctcaatt atttccgcta tcaccaagaa atacgcagcc cgtcgcgtgg
    31141 aagatcagga acgctctgaa gcctggtggc cgcagttaca ctcctttgct gtaggtctgc
    31201 cgggttcacc ggatcttaaa gcagcccagg aagtggcaaa ccatctgggc acggtgcatc
    31261 acgaaattca cttcactgta caggaaggtc tggatgccat ccgcgacgtg atttaccaca
    31321 tcgaaactta tgatgtgacc actattcgcg cttcaacacc gatgtattta atgtcgcgta
    31381 agatcaaggc gatgggcatt aaaatggtgc tgtccggtga aggttctgat gaagtgtttg
    31441 gcggttatct ttacttccat aaagcgccca acgctaaaga actgcatgaa gagacggtgc
    31501 gtaaactgct ggccctgcat atgtatgact gcgcgcgcgc caacaaagcg atgtcagcct
    31561 ggggcgtgga agcacgcgtt ccgttcctcg acaaaaaatt ccttgatgtg gcgatgcgca
    31621 ttaacccgca ggataaaatg tgcggtaacg gcaaaatgga aaaacacatc ctgcgtgaat
    31681 gttttgagtc atacctgccc gcaagcgtgg cctggcggca gaaagagcag ttctccgatg
    31741 gcgtcggtta cagttggatc gacaccctga aagaagtggc ggcgcagcag gtttctaatc
    31801 agcaactgga aactgcccgc ttccgcttcc cgtacaacac gccaacctca aaagaagcgt
    31861 atctgtaccg ggagatcttt gaagaactgt tcccgcttcc gagcgccgct gagtgcgtgc
    31921 ctggcggtcc ttccgtcgcg tgttcttccg ctaaagcgat cgaatgggat gaagcgttca
    31981 agaaaatgga cgatccatct ggtcgtgcgg ttggtgttca ccagtcggca tataagtaag
    32041 aaatgcgaaa cagccccggt gaaatccggg gctgtttcag ttattgaggt gcttgttgat
    32101 tctgatatgc agtaaggaaa tgttccgggt ttgccacatc actgtttgac aactcatcac
    32161 tgtaggccag tatttcatag attaatttcc caccactatt gttgaattcc gaatttcatc
    32221 ctgtacgaca aaagaatggc tgtagggtgg ggaaaaaaca caaagtaaac aataattgac
    32281 gaatatagcg ccacgctgtt cgcaacctaa ccaaatagtc actttcgagc aattttcctt
    32341 gaaaaagagg ttgacgctgc aaggctctat acgcataatg cgccccgcaa cgccgataag
    32401 gtatcgcgaa aaaaaagatg gctacgtagc tcagttggtt agagcacatc actcataatg
    32461 atggggtcac aggttcgaat cccgtcgtag ccaccatctt tttggcggga gtggcgaaat
    32521 tggtagacgc accagattta ggttctggcg ccgcaaggtg tgcgagttca agtctcgcct
    32581 cccgcaccat tcaccagaaa gtgttgtacg gatggggtat cgccaagcgg taaggcaccg
    32641 gtttttgata ccggcattcc ctggttcgaa tccaggtacc ccagccatct tcttcgagta
    32701 agcggttcac cgcccggtta ttggggtatc gccaagcggt aaggcaccgg tttttgatac
    32761 cggcattccc tggttcgaat ccaggtaccc cagccataga agaaacaatc tggctacgta
    32821 gctcagttgg ttagagcaca tcactcataa tgatggggtc acaggttcga atcccgtcgt
    32881 agccaccaaa ttctgaatgt gtcgaatacg ttcggcaaat tcaaaaacca atttgttggg
    32941 gtatcgccaa gcggtaaggc accggattct gattccggca ttccgaggtt cgaaccctcg
    33001 taccccagcc aatttattca agacgcttac atcgtaagtg cacccagttg gggtatcgcc
    33061 aagcggtaag gcaccggatt ctgattccgg cattccgagg ttcgaatcct cgtaccccag
    33121 ccacattaaa aaagctcgct tcggcgagct ttttgctttt ctgcgttcat tcaatgtcga
    33181 atgcgatgtt gacacgtctt atccttcaat gtcggatgcg acgctgccgc gtcttatccg
    33241 acctacggtt ggcacgcatc cggcaatgtt gtaaggctac aaccctaacg catatttcag
    33301 cgcctgacgt ttcaacacgc cagcacgctc tgccgccatt aacccgagat tacgcacaaa
    33361 acgcagcggc ggcagattat tactgaatcc ggcataaaac agatccatac cactttgcat
    33421 aatgaagtta tccgccatgc gccgcatctg gtaacgcttg aggacaggat aactggccca
    33481 cgcttcaccg taactgcggg cattcaccag aacatcaatc agggcatcga catcacgata
    33541 accaagattc accccctgcc ccgccagcgg atggatggta tgcgcggcat cgcccaccag
    33601 cgcaagcccc ggctgcacat actgcaacgc atgtcggcgc gtcagcggaa acgcaccagc
    33661 ggcaagcggt gtaacgtaac ccagacgcga cgggaaatgc ttcgcgattt ccgcctggag
    33721 ttgcgccata ttcatattct gcaactggcg aatacgcgcc ggagagtcat accacaccag
    33781 cgatgcccag ttatcaaaca acggcagaaa cgcacgcggt ccgtccgggg taaattgctg
    33841 ccaggtgctg tcgccgggat cgttctcaca ctgtacgcta atcaacatgc acgactgcgc
    33901 atactgccag gcatgaacgc caattcccgc catctgccgc acctgagaat ttgcgccgtc
    33961 ggcaccaatc accagtttcg cgcggatcgt ttcaccgccc ttcagttcca gctcctgaag
    34021 atcattatct cgatgtaatg caatcagcga gcctggcaca cgtaacgtta ctttcggatg
    34081 cgcttccagc gcctgccaca gcgcctgttg cagtacggtg ttttccacca tatagccaag
    34141 caacggtagc ttaagttcag cggcgtcaaa caccacatgc gccgtttccc actcccacgt
    34201 ttccagtctg cggtaaggat ggcaacgcat agcctgtact gcatcccaga cccctaaccc
    34261 tttaagcaat gataccgatg cggcgctgat cgccgagatc cgcacgtccg gttggctatc
    34321 agcgacaaac ggtgcaggtt ctgcgtgctc gatcaccgtt accgaaaatc cgtgctgtgc
    34381 cagccccagc gccagcgcgc cgccgaccat tcctccgccg acaatggcaa tttccgttgg
    34441 ttgatttgtc atggtcaatc atcctgttag caatatgctt taagtttaca ggatttttac
    34501 ccccaagggc tgataacgct catactggcc acaacggcag caaagcatta cactatgcgc
    34561 cctgcattcc tggctactat ttcgcaagag caagtcgatg accaaaaaac tccatattaa
    34621 aacctggggc tgtcagatga acgagtacga ttcatcgaag atggccgatc tgctggatgc
    34681 cacccacggc tatcaactga ccgacgtggc ggaagaagcg gatgtgctgc tgctgaacac
    34741 ctgctcaatc cgcgagaagg ctcaggaaaa agtcttccat cagttgggtc gctggaaact
    34801 gttaaaagag aagaatccag acctgattat cggcgtcggt ggctgcgtgg catcgcaaga
    34861 aggcgagcac attcgccagc gcgcccacta tgtcgatatt atttttgggc cgcaaacgct
    34921 gcaccgtctg ccggagatga tcaactccgt gcgcggcgac cgcagcccgg ttgtagatat
    34981 cagcttcccg gaaatcgaga agtttgaccg tctaccggaa ccgcgcgccg aagggccgac
    35041 cgcgtttgtc tccatcatgg aaggctgcaa taaatattgc acctactgcg tggtgcctta
    35101 cacccgtggt gaagaggtaa gccgtccgtc tgacgatatt ctgtttgaga ttgcccagct
    35161 tgcggctcag ggcgtgcgtg aagtcaacct gctcggtcag aacgtgaacg cctggcgtgg
    35221 tgaaaactac gacggctcca ccggatcgtt tgccgatctg ctgcgtctgg ttgctgcgat
    35281 cgacgggatc gatcgtattc gctttaccac cagccatccg atcgaattca ccgacgatat
    35341 catcgaagtg tatcgcgaca cgccggagct ggtgagcttc ctgcatctgc cggtacagag
    35401 cggttccgat cgcattctga acctgatggg ccgtactcat acggcactgg agtacaaagc
    35461 gatcatccgt aaactgcgtg cggcgcgtcc agatattcag atcagttctg atttcatcgt
    35521 tggcttccct ggcgaaacca ccgaagactt cgagaaaacg atgaagctga ttgccgacgt
    35581 caatttcgac atgagctaca gctttatctt ctctgcacgt ccgggtacac cagccgccga
    35641 tatggttgat gatgttccgg aagaagagaa gaagcagcgt ctgtatattc tgcaagaacg
    35701 tatcaatcag caagcgatgg catggagccg ccggatgctc ggcaccaccc agcgtattct
    35761 ggtagaaggg acttcgcgta agagcatcat ggagctttcc gggcgtaccg aaaataaccg
    35821 cgtggtcaac ttcgagggca caccggatat gatcggtaaa ttcgtcgatg tagaaattac
    35881 cgacgtctac ccgaactctc tgcgcggtaa agtggtgcgt actgaagatg aaatgggcct
    35941 gcgcgtggca gaaacaccgg aatcggtgat tgcccgtacc cgcaaagaaa acgaccttgg
    36001 cgtgggttat tatcagccgt aattctcagg cccgccgttc cggtgggcct tgttttttct
    36061 ctctttatcc ccatctttat cgcaatgctt gcgccttttt cctgtggcgt gaataatttc
    36121 cttataggcc ggtgaatgtt cagcttccgg cggcatacag ataagaggaa cggtttgaac
    36181 atagacactc gcgaaatcac cctggagcca gcagacaacg cgcgtctgtt gagcctgtgc
    36241 ggcccgtttg atgacaacat caagcagctc gaacgccgtc tcggcatcga gatcaatcgc
    36301 cgcgacaacc actttaaact gaccggccgt ccgatttgcg tcaccgctgc ggcagacatt
    36361 ctgcgtagcc tgtatgtcga tacagccccg atgcgcggtc agattcagga tatcgaaccg
    36421 gaacagatcc accttacgat taaagaagcg cgagtactgg agcaaagtgc ggagagcgtg
    36481 ccggagtacg gcaaagcggt caatatcaaa accaaacgcg gcgtaattaa gccgcgcacg
    36541 ccaaaccagg cgcagtacat cgccaatatt ctcgaccatg acattacctt cggcgttggc
    36601 ccggcgggta cgggtaaaac ctacctggca gtggctgcgg cagttgatgc cctggagcgt
    36661 caggagattc gccgtattct gctgactcgt ccggcggtcg aagccggtga gaaactgggc
    36721 ttcctgcctg gcgatttaag ccagaaagta gacccgtatc tgcgcccact gtacgacgcg
    36781 ctgtttgaaa tgctgggctt tgagaaagtt gagaaactga ttgagcgcaa cgttattgaa
    36841 gtcgcgccgc tggcctatat gcgtggtcgt acgctgaacg acgcgtttat cattctcgat
    36901 gagagccaga acaccaccat cgaacagatg aagatgttcc tgacccgtat cggttttaac
    36961 tcaaaagcgg ttatcaccgg cgacgtcaca cagatcgacc tgccgcgtaa tactaaatca
    37021 ggcttacgtc acgccatcga agtactggcc gatgtcgaag agatcagctt taacttcttc
    37081 cacagcgaag acgtggttcg tcaccctgtg gtggcgcgta tcgttaacgc ctatgaagcc
    37141 tgggaagaag ccgaacaaaa acgaaaagcg gcgctggcgg cagaacgcaa gcgcgaagaa
    37201 caggaacaaa aatgagtcag gtgatcctcg atttacaact ggcatgtgaa gataattccg
    37261 ggttaccgga agagagccag tttcaaacat ggctgaatgc ggtgatcccg cagtttcagg
    37321 aagaatcgga agtgactatt cgcgtggtcg ataccgccga aagccacagt ctgaatctga
    37381 cctatcgcgg taaggataag ccgaccaacg tgctctcctt cccgtttgaa gtgccgcctg
    37441 gcatggaaat gtcgctactg ggcgatctgg ttatctgccg tcaggtggtt gagaaggaag
    37501 ctcaggagca aggcaaacca ctggaggcgc actgggcgca tatggtggtg cacggcagtc
    37561 tgcatttgtt aggttacgat cacatcgaag atgacgaagc agaagaaatg gaagccctcg
    37621 aaacagagat tatgcttgct ctgggctatg aggatccgta cattgccgag aaagaataat
    37681 ttgccaggca tttgactggc agacgtcccc gccgttggtg attaacgacg gcgttttgat
    37741 taactaacat gagaacccat acgacgccat gagcgacgac aattcacaca gtagtgacac
    37801 gataagcaac aagaagggat ttttctccct gttactcagc caacttttcc acggtgaacc
    37861 gaaaaaccgt gacgaactgc tggcgctgat ccgtgattcc gggcagaacg accttatcga
    37921 cgaagatacg cgcgatatgc tcgaaggggt gatggacatc gcagaccaac gcgttcgcga
    37981 catcatgatc ccccgctccc agatgattac cctgaaacgc aaccagacgc tggacgaatg
    38041 ccttgatgtc atcatcgagt ccgcccactc acgtttcccg gtgattagcg aagacaaaga
    38101 tcacattgaa gggattctga tggcgaaaga cttgctgccg tttatgcgca gcgatgctga
    38161 agccttcagc atggacaaag tgttacgtca ggcggttgtc gttcctgaaa gtaagcgcgt
    38221 agaccggatg ctgaaagagt ttcgctctca gcgttaccac atggcgatcg tcattgacga
    38281 attcggtggg gtttccggtc tggtgaccat tgaagacatc ctggaactga ttgttggtga
    38341 gattgaagac gaatatgacg aagaagatga tatcgacttc cgtcagctga gtcgtcatac
    38401 ctggaccgtg cgcgcactgg cttccattga agacttcaac gaagcgttcg gcacccactt
    38461 tagcgatgaa gaagtcgaca ctatcggtgg tctggtgatg caggcgtttg ggcatcttcc
    38521 ggcgcgtggc gaaactatcg acatcgacgg ttaccagttc aaagtggcga tggccgacag
    38581 tcgacgtatt attcaggttc atgtcaaaat cccggatgac tcaccccagc cgaagctgga
    38641 tgaataaaac cgaaactgga tagataacta catggctttt gcctcattaa ttgaacgcca
    38701 gcgcattcgc ctgctgctgg cgttattatt cggtgcctgc ggaacgctgg ccttctctcc
    38761 ttacgacgtc tggcctgcgg cgattatttc gttgatgggg cttcaggcgt tgacctttaa
    38821 ccgccgtcca ctccagtctg ccgctattgg cttttgctgg ggatttggcc tctttggcag
    38881 cggtattaac tgggtctatg tcagcatcgc gacctttggc ggaatgcctg gcccggttaa
    38941 catcttcctg gtggtgctgc tggcggcgta tttgtcgctg tataccggac tgtttgctgg
    39001 cgtgctgtcg cgtctgtggc cgaaaaccac ctggctgcgc gtggcgattg ccgcccctgc
    39061 tctctggcaa gtgaccgagt ttctgcgcgg ttgggtactg acaggcttcc cgtggttaca
    39121 gttcggctat agccagattg atggcccgtt aaaagggctg gcaccgataa tgggcgtgga
    39181 agccattaac ttcctgctga tgatggttag tggcctgctg gcactggcgt tggtcaaacg
    39241 caactggcgt ccgctggtgg tggccgtcgt gctgtttgcc ctacccttcc cgctgcgtta
    39301 catccaatgg tttaccccgc aaccggagaa aaccattcag gtttcgatgg ttcagggcga
    39361 tattccgcaa tcactgaaat gggatggaga tcagcttctt aatacgctga agatttacta
    39421 caacgcaacg gctccgctga tgggcaaatc atcgttgatt atctggccgg agtcggcgat
    39481 aaccgatctg gaaattaatc agcaaccgtt cctcaaagca ctggacggtg agttgcgcga
    39541 taaaggtagc tcgctggtaa ccgggattgt cgacgcgcgt ctcaataagc agaaccgcta
    39601 cgatacctac aacaccatca tcacactggg taaaggtgca ccgtacagct acgaatcagc
    39661 cgatcgctat aacaaaaacc atctggtgcc gtttggcgag tttgtcccgc tggagtcgat
    39721 tctgcgtccg ttagcaccgt tctttgatct gccgatgtcg tcgttcagcc gtgggccata
    39781 tatccagccg ccgctgtcag taaatggtat tgagcttact gcggctattt gctacgagat
    39841 cattctcggc gagcaagtgc gcgataactt ccgcccggat accgactatc tgctgactat
    39901 ctccaacgat gcgtggtttg gtaaatctat tggtccatgg caacacttcc agatggcgcg
    39961 aatgcgtgcg ctggagctgg cgcgcccact gttgcgcagc accaacaacg gcattacggc
    40021 ggtgattggc ccgcagggtg agattcaggc gatgatcccg cagttcaccc gcgaggtgtt
    40081 aaccactaat gtgacaccga ccaccggact cacaccgtat gcacgtaccg gcaactggcc
    40141 actgtgggtg ctgacggcac tgtttggttt tgccgctgtg ttgatgagtc tgcgagcacg
    40201 taaacgttga tgtgcctgat gtatcctgca tgagcaaaac gtactttctc attgagcttt
    40261 ggggcatggt tatcatgccc ctttttctta cggttcaggg atacaagcca cattgccata
    40321 ttggggatga cgaataattg cctgcggatc aagcgagcgc gtcctgtcca tttggatcaa
    40381 cccgttcttc gccatgacaa atatttttct accatccgct gaaaa
//
LOCUS       DAJVSY010000015        39771 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.015, whole genome shotgun sequence.
ACCESSION   DAJVSY010000015 DAJVSY010000000
VERSION     DAJVSY010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 39771)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39771)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39771
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.015"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            7..438
                     /locus_tag="OQQ19_000735"
     CDS             7..438
                     /locus_tag="OQQ19_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="HCS1802460.1"
                     /translation="MALNLASGEGNFFIRPGGVFYVAGDKVGIIRLDAFKTSKEIQFA
                     VQSGPMLLENGVINPRIHPNVASRKIRNGVGINKQGNAVFLLSQQATNFYDFACYAKA
                     KLNVEQLLYLDGTISHMYMKGGAIPWQRYPFVTMISVERKG"
     gene            521..1423
                     /locus_tag="OQQ19_000736"
     CDS             521..1423
                     /locus_tag="OQQ19_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosyl-l-methionine hydroxide
                     adenosyltransferase family protein"
                     /protein_id="HCS1802461.1"
                     /translation="MKKTLATLFLLTCLGSSSAYADNALILQTDFSLKDGAVSAMKGV
                     AFGVDHNLKIFDLTHEIPPYNIWEGAYRLYQTASYWPQGSVFVSVVDPGVGTDRKSVV
                     LKTKSGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTG
                     ARLASGAITFEQVGPELPAKVVELSYQKAKATKGEVKGNIPILDIQYGNVWSNISDEL
                     LNQAEIKLNDTLCVTISEGSQQKYAGKMPYVASFGDVPEGQPMVYLNSLLNVSVALNM
                     DNFAQKHQVASGADWNIDVKKCAK"
     gene            complement(1468..3630)
                     /gene="uvrD"
                     /locus_tag="OQQ19_000737"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
     CDS             complement(1468..3630)
                     /gene="uvrD"
                     /locus_tag="OQQ19_000737"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HCS1802462.1"
                     /translation="MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIA
                     WLMSVENCLPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHH
                     MDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQ
                     SYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNIL
                     VDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAET
                     IRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISLYCAFNELDEARFVV
                     NRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDAL
                     SYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKAL
                     AGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIEN
                     LEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTMHSAKGLE
                     FPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKE
                     VYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMGTPMVENDSGYKLGQRVRHAKFG
                     EGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYARLETV"
     gene            complement(3714..4430)
                     /gene="yigB"
                     /locus_tag="OQQ19_000738"
     CDS             complement(3714..4430)
                     /gene="yigB"
                     /locus_tag="OQQ19_000738"
                     /EC_number="3.1.3.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-(5-phospho-D-ribitylamino)uracil
                     phosphatase YigB"
                     /protein_id="HCS1802463.1"
                     /translation="MRFYRPLGRISALTFDLDDTLYDNRPVILRTEREALTFVQNYHP
                     ALRSFQNEDLQRLRQAVREAEPEIYHDVTRWRFRSIEQAMLDAGLSAEEASAGAHAAM
                     INFAKWRSRIDVPQQTHDTLKQLAKKWPLVAITNGNAQPELFGLGDYFEFVLRAGPHG
                     RSKPFSDMYFLAAEKLNVPIGEILHVGDDLTTDVGGAIRSGMQACWIRPENGDLMQTW
                     DSRLLPHLEISRLASLTSLI"
     gene            complement(4430..5326)
                     /gene="xerC"
                     /locus_tag="OQQ19_000739"
     CDS             complement(4430..5326)
                     /gene="xerC"
                     /locus_tag="OQQ19_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HCS1802464.1"
                     /translation="MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG
                     LQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVS
                     APKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHL
                     DLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISAR
                     NVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYT
                     HLDFQHLASVYDAAHPRAKRGK"
     gene            complement(5323..6030)
                     /locus_tag="OQQ19_000740"
     CDS             complement(5323..6030)
                     /locus_tag="OQQ19_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF484 domain-containing protein"
                     /protein_id="HCS1802465.1"
                     /translation="MKQPGEELQETLTELDDRAVVDYLIKNPEFFIRNARAVEAIRVP
                     HPVRGTVSLVEWHMARARNHIHVLEENMALLMEQAIANEGLFYRLLYLQRSLTAASSL
                     DDMLMRFHRWARDLGLAGASLRLFPDRWRLGAPSNHTHLALSRQSFEPLRIQRLGQEQ
                     HYLGPLNGPELLVVLPEAKAVGSVAMSMLGSDADLGVVLFTSRDASHYQQGQGTQLLH
                     EIALMLPELLERWIERV"
     gene            complement(6027..6851)
                     /gene="dapF"
                     /locus_tag="OQQ19_000741"
     CDS             complement(6027..6851)
                     /gene="dapF"
                     /locus_tag="OQQ19_000741"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HCS1802466.1"
                     /translation="MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQ
                     LLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANG
                     RMVLTVTDDDLVRVNMGEPNFEPSAVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHC
                     VIQVDDVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACG
                     SGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL"
     gene            complement(6896..7090)
                     /locus_tag="OQQ19_000742"
     CDS             complement(6896..7090)
                     /locus_tag="OQQ19_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004987677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1802467.1"
                     /translation="MKNVFKVLTVLLTLFSLTGCGLKGPLYFPPADKNAPPPTKPVET
                     QTQSTVPDKNDRATGMVHPR"
     gene            7553..7873
                     /gene="cyaY"
                     /locus_tag="OQQ19_000743"
     CDS             7553..7873
                     /gene="cyaY"
                     /locus_tag="OQQ19_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000999950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HCS1802468.1"
                     /translation="MNDSEFHRLADQLWLTIEEHLDDWDGDSDIDCEINGGVLTITFE
                     NGSKIIINRQEPLHQVWLATKQGGYHFDLKGDEWICDRSGETFWDLLEQAATQQAGET
                     VSFR"
     gene            complement(7913..10459)
                     /gene="cyaA"
                     /locus_tag="OQQ19_000744"
     CDS             complement(7913..10459)
                     /gene="cyaA"
                     /locus_tag="OQQ19_000744"
                     /EC_number="4.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HCS1802469.1"
                     /translation="MYLYIETLKQRLDAINQLRVDRALAAMGPAFQQVYSLLPTLLHY
                     HHPLMPGYLDGNVPKGICLYTPDETQRHYLNELELYRGMSVQDPPKGELPITGVYTMG
                     STSSVGQSCSSDLDIWVCHQSWLDSEERQLLQRKCSLLESWAASLGVEVSFFLIDENR
                     FRHNESGSLGGEDCGSTQHILLLDEFYRTAVRLAGKRILWNMVPCDEEEHYDDYVMTL
                     YAQGVLTPNEWLDLGGLSSLSAEEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYP
                     NPRLLAKDIKQRLHDGEIVSFGLDPYCMMLERVTEYLTAIEDFTRLDLVRRCFYLKVC
                     EKLSRERACVGWRRAVLSQLVSEWGWDEARLAMLDNRANWKIDQVREAHNELLDAMMQ
                     SYRNLIRFARRNNLSVSASPQDIGVLTRKLYAAFEALPGKVTLVNPQISPDLSEPNLT
                     FIYVPPGRANRSGWYLYNRAPNIESIISHQPLEYNRYLNKLVAWAWFNGLLTSRTRLY
                     IKGNGIVDLPKLQEMVADVSHHFPLRLPAPTPKALYSPCEIRHLAIIVNLEYDPTAAF
                     RNQVVHFDFRKLDVFSFGENQNCLVGSVDLLYRNSWNEVRTLHFNGEQSMIEALKTIL
                     GKMHQDAAPPDSVEVFCYSQHLRGLIRTRVQQLVSECIELRLSSTRQETGRFKALRVS
                     GQTWGLFFERLNVSVQKLENAIEFYGAISHNKLHGLSVQVETNHVKLPAVVDGFASEG
                     IIQFFFEETQDENGFNIYILDESNRVEVYHHCEGSKEELVRDVSRFYSSSHDRFTYGS
                     SFINFNLPQFYQIVKVDGREQVIPFRTKSIGNMPPANQDHDTPLLQQYFS"
     gene            10846..11787
                     /gene="hemC"
                     /locus_tag="OQQ19_000745"
     CDS             10846..11787
                     /gene="hemC"
                     /locus_tag="OQQ19_000745"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HCS1802470.1"
                     /translation="MLDNVLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTR
                     GDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICERE
                     DPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLD
                     NGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDARTRELLAA
                     LNHHETALRVTAERAMNTRLEGGCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGER
                     RGAPQDAEQMGISLAEELLNNGAREILAEVYNGDAPA"
     gene            11784..12524
                     /gene="hemD"
                     /locus_tag="OQQ19_000746"
     CDS             11784..12524
                     /gene="hemD"
                     /locus_tag="OQQ19_000746"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HCS1802471.1"
                     /translation="MSILVTRPSPAGEELVSRLRTLGQVAWHFPLIEFSPGRQLPQLA
                     DQLAALGESDLLFALSQHAVAFAQSQLHQQDRKWPRLPDYFAIGRTTALALHTVSGQK
                     ILYPQDREISEVLLQLPELQNIAGKRALILRGNGGRELIGDTLTARGAEVTFCECYQR
                     CAIHYDGAEEAMRWQSREVTMVVVTSGEMLQQLWSLIPQWYREHWLLRCRLLVVSERL
                     AKLARELGWQDIKVADNADNDALLRALQ"
     gene            12546..13781
                     /gene="hemX"
                     /locus_tag="OQQ19_000747"
     CDS             12546..13781
                     /gene="hemX"
                     /locus_tag="OQQ19_000747"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HCS1802472.1"
                     /translation="MTEQEKTSAVVEETREAVDTTSQPVATEKKSKNNTALILSAVAI
                     AIALAAGVGLYGWGKQQAVNQTATSDALANQLTALQKAQESQKAELEGIIKQQAAQLK
                     QANRQQETLAKQLDEVQQKVATISGSDAKTWLLAQADFLVKLAGRKLWSDQDVTTAAA
                     LLKSADASLADMNDPSLITVRRAITDDIASLSAVSQVDYDGIILKLNQLSNQVDNLRL
                     ADNDSDGSPMDSDGEELSSSISEWRINLQKSWQNFMDNFITIRRRDDTAVPLLAPNQD
                     IYLRENIRSRLLVAAQAVPRHQEETYRQALENVSTWVRAYYDTDDATTKAFLDEVDQL
                     SQQNISMDLPETLQSQAMLEKLMQTRVRNLLAQPAAGTTEAKPAPAPAPAPAPAPAPA
                     PAPAPAPQGDTPAAAPQGE"
     gene            13784..14980
                     /gene="hemY"
                     /locus_tag="OQQ19_000748"
     CDS             13784..14980
                     /gene="hemY"
                     /locus_tag="OQQ19_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX biogenesis protein HemY"
                     /protein_id="HCS1802473.1"
                     /translation="MLKVLLLFVLLIAGIVVGPMIAGHQGYVLIQTDNYNIETSVTGL
                     AIILILAMVVLFAIEWLLRRIFRTGAHTRGWFVGRKRRRARKQTEQALLKLAEGDYQQ
                     VEKLMAKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELAGNDTIPVEITRV
                     RLQLARNENHAARHGVDKLLEVTPRHPEVLRLAEQAYIRTGAWSSLLDIIPSMAKAHV
                     GDEEHRAMLEQQAWIGLMDQARADNGSEGLRNWWKNQSRKTRHQVALQVAMAEHLIEC
                     DDHDTAQQIIIDGLKRQYDDRLLLPIPRLKTNNPEQLEKVLRQQIKNVGDRPLLWSTL
                     GQSLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTL
                     QNNPPQ"
     gene            15658..15819
                     /locus_tag="OQQ19_000749"
     CDS             15658..15819
                     /locus_tag="OQQ19_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000395868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802474.1"
                     /translation="MEFSFSPKLLVVAVAAALPLMASAADTPSTATARKGFAGYDHPN
                     QYPQNAAIY"
     gene            complement(15903..17138)
                     /locus_tag="OQQ19_000750"
     CDS             complement(15903..17138)
                     /locus_tag="OQQ19_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HCS1802475.1"
                     /translation="MLQQVPTRAFHVMAKPSGSDCNLNCDYCFYLEKQSLYREKPVTH
                     MDDDTLEAYVRHYIAASEPQNEVAFTWQGGEPTLLGLDFYRRAVKLQAKYGAGRKISN
                     SFQTNGVLLDDKWCAFLAENHFLVGLSLDGPAEIHNQYRVTKGGRPTHKLVMRALTLL
                     QKHHVDYNVLVCVNRTSAQQPLQVYDFLCDAGVEFIQFIPVVERLADETAASDGLKLH
                     APGDIQGELTEWSVRPDEFGEFLVAIFDHWIKRDVGKIFVMNIEWAFANFVGAPGAVC
                     HHQPTCGRSVIVEHNGDVYACDHYVYPQYRLGNMHQQTIAEMIDSPQQQVFGEDKFKQ
                     LPAQCRSCNVLKACWGGCPKHRFMLDASGKPGLNYLCAGYQRYFRHLPPYLKAMADLL
                     AHGRPASDIMQAHLLVVNK"
     gene            complement(17285..17361)
                     /locus_tag="OQQ19_000751"
     tRNA            complement(17285..17361)
                     /locus_tag="OQQ19_000751"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17325..17327),aa:Pro,seq:tgg)
     gene            complement(17404..17490)
                     /locus_tag="OQQ19_000752"
     tRNA            complement(17404..17490)
                     /locus_tag="OQQ19_000752"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17454..17456),aa:Leu,seq:cag)
     gene            complement(17511..17586)
                     /locus_tag="OQQ19_000753"
     tRNA            complement(17511..17586)
                     /locus_tag="OQQ19_000753"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17551..17553),aa:His,seq:gtg)
     gene            complement(17645..17721)
                     /locus_tag="OQQ19_000754"
     tRNA            complement(17645..17721)
                     /locus_tag="OQQ19_000754"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17685..17687),aa:Arg,seq:ccg)
     gene            complement(17824..19209)
                     /locus_tag="OQQ19_000755"
     CDS             complement(17824..19209)
                     /locus_tag="OQQ19_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1802476.1"
                     /translation="MADNKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS
                     VLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMA
                     VGISEITAVGVYVQFWFPEMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTT
                     IIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVEL
                     IGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNESGSNGSPFVLTFA
                     KIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVA
                     GVAVSIAILLIGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAA
                     IASHPFRSILFPWANYVTMAFLICVLIGMYFNEDTRMSLFVGIIFMLAVTAIYKVFGL
                     NRHGKAHKLEE"
     gene            complement(19400..20140)
                     /gene="rffM"
                     /locus_tag="OQQ19_000756"
     CDS             complement(19400..20140)
                     /gene="rffM"
                     /locus_tag="OQQ19_000756"
                     /EC_number="2.4.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     N-acetylmannosaminouronosyltransferase"
                     /protein_id="HCS1802477.1"
                     /translation="MNNNTTAPTYTLRGLQLIGWRDMQHALDYLFADGQLKQGTLVAI
                     NAEKMLTIEDNAEVRELINAAEFKYADGISVVRSVRKKYPQAQVSRVAGADLWEELMA
                     RAGKEGTPVFLVGGKPEVLAQTEAKLRNQWNVNIVGSQDGYFKPEQRQALFERIHASG
                     AQIVTVAMGSPKQEIFMRDCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWL
                     YRLLSQPSRIKRQLRLLRYLRWHYTGNL"
     gene            complement(20143..21495)
                     /gene="wzyE"
                     /locus_tag="OQQ19_000757"
     CDS             complement(20143..21495)
                     /gene="wzyE"
                     /locus_tag="OQQ19_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECA oligosaccharide polymerase"
                     /protein_id="HCS1802478.1"
                     /translation="MSLLQFSGLFVVWLLCTLFIATLTWFEFRRVRFNFNVFFSLLFL
                     LTFFFGFPLTSVLVFRFDVGVAPPEILLQALLSAGCFYAVYYVTYKTRLRKRVADVPR
                     RPLFTMNRVETNLTWVILMGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKR
                     FFYFFIPAMLVVYFLRQDSKAWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIG
                     IIRGWISLWMLAAAGVLGIVGMFWLALKRYGMNVSGDEAFYTFLYLTRDTFSPWENLA
                     LLLQNYDNIDFQGLAPIVRDFYVFIPSWLWPGRPSMVLNSANYFTREVLNNHSGLAIS
                     PTLIGSLVVMGGALFIPLGAIVVGLIIKWFDWLYELGNREPNRYKAAILHSFCFGAIF
                     NMIVLAREGLDSFVSRVVFFIVVFGACLMIAKLLYWLFESAGLIHKRTKSSLRTQVEG
                     "
     gene            complement(21492..22571)
                     /gene="rffT"
                     /locus_tag="OQQ19_000758"
                     /gene_synonym="wecF"
     CDS             complement(21492..22571)
                     /gene="rffT"
                     /locus_tag="OQQ19_000758"
                     /gene_synonym="wecF"
                     /EC_number="2.4.1.325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDP-N-acetylfucosamine:lipid II
                     N-acetylfucosaminyltransferase"
                     /protein_id="HCS1802479.1"
                     /translation="MTVLIHVLGSDIPHHNRTVLRFFNDALAATSEHAREFMVVGKDD
                     GLSDSCPALSVQFFPGKKSLAEAVIAKAKANRQQRFFFHGQFNPTLWLALLSGGIKPS
                     QFFWHIWGADLYELSSGLRYKLFYPLRRLAQKRVGCVFATRGDLSFFAKTHPKVRGEL
                     LYFPTRMDPSLNTMANDRQREGKMTILVGNSGDRSNDHIAALRAVHQQFGDTVKVVVP
                     MGYPPNNEAYIEEVRQAGLELFSEENLQILSEKLEFDAYLALLRQCDLGYFIFARQQG
                     IGTLCLLIQAGIPCVLNRENPFWQDMTEQHLPVLFTTDDLNEDIVREAQRQLASVDKN
                     TIAFFSPNYLQGWQRVLAIAAGEVA"
     gene            complement(22568..23818)
                     /gene="wzxE"
                     /locus_tag="OQQ19_000759"
     CDS             complement(22568..23818)
                     /gene="wzxE"
                     /locus_tag="OQQ19_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid III flippase WzxE"
                     /protein_id="HCS1802480.1"
                     /translation="MSLAKASLWTAASTLVKIGAGLLVGKLLAVSFGPAGLGLAANFR
                     QLITVLGVLAGAGIFNGVTKYVAQYHDNPQQLRRVVGTSSAMVLGFSTLMALVFVLAA
                     APISQGLFGNTDYQGLVRLVALVQMGIAWGNLLLALMKGFRDAAGNALSLIVGSLIGV
                     LAYYVSYRLGGYEGALLGLALIPALVVIPAAIMLIKRGVIPLSYLKPSWDNGLAGQLS
                     KFTLMALITSVTLPVAYIMMRKLLAAQYSWDEVGIWQGVSSISDAYLQFITASFSVYL
                     LPTLSRLTEKRDITREVVKSLKFVLPAVAAASFTVWLLRDFAIWLLLSNKFTAMRDLF
                     AWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLMVFAHWLIPAHGALGAAQ
                     AYMATYIVYFSLCCGVFLLWRRRA"
     gene            complement(23820..24950)
                     /gene="rffA"
                     /locus_tag="OQQ19_000760"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
     CDS             complement(23820..24950)
                     /gene="rffA"
                     /locus_tag="OQQ19_000760"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /EC_number="2.6.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxygalactose transaminase"
                     /protein_id="HCS1802481.1"
                     /translation="MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRF
                     GSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRP
                     DTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMST
                     YKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFR
                     GQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGR
                     IELPSIPDGCVQNAHMFYIKLRDIDDRSALINFLKEAEIMAVFHYIPLHGCPAGEHFG
                     EFHGEDRYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS"
     gene            complement(24955..25629)
                     /gene="rffC"
                     /locus_tag="OQQ19_000761"
                     /gene_synonym="wecD"
     CDS             complement(24955..25629)
                     /gene="rffC"
                     /locus_tag="OQQ19_000761"
                     /gene_synonym="wecD"
                     /EC_number="2.3.1.210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxy-D-galactose
                     acyltransferase"
                     /protein_id="HCS1802482.1"
                     /translation="MPVRASIEPLTWENAFFGVNSAIVRITSEAPLLTPDALAPWSRV
                     QAKIAASNTGELDALQQLGFSLVEGEVDLALPVNNVSDSGAVVAQETDIPALRQLASA
                     AFAQSRFRAPWYAPDASGRFYAQWIENAVRGTFDHQCLILRAASGDIRGYVSLRELNA
                     TDARIGLLAGRGAGAELMQTALNWAYARGKTTLRVATQMGNTAALKRYIQSGANVEST
                     AYWLYR"
     gene            complement(25607..26488)
                     /gene="rfbA"
                     /locus_tag="OQQ19_000762"
     CDS             complement(25607..26488)
                     /gene="rfbA"
                     /locus_tag="OQQ19_000762"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HCS1802483.1"
                     /translation="MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA
                     GIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLVQAFIIGETFLNGEPS
                     CLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDQERFGVVEFDDNFRAISLEEK
                     PKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRG
                     FAWLDTGTHDSLIEASTFVQTVEKRQGFKIACLEEIAWRNGWLDDEGVKRAASSLAKT
                     GYGQYLLELLRARPRQY"
     gene            complement(26507..27574)
                     /gene="rffG"
                     /locus_tag="OQQ19_000763"
     CDS             complement(26507..27574)
                     /gene="rffG"
                     /locus_tag="OQQ19_000763"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HCS1802484.1"
                     /translation="MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSL
                     APVAQSDRFAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNI
                     VGTYTLLEAARAYWNTLTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPY
                     SASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYG
                     NGQQIRDWLYVEDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPN
                     KPHGVVHYRDLITFVADRPGHDLRYAIDASKIARELGWLPQETFESGMRKTVQWYLAN
                     ESWWKQVQDGSYQGERLGLKG"
     gene            complement(27574..28836)
                     /gene="wecC"
                     /locus_tag="OQQ19_000764"
     CDS             complement(27574..28836)
                     /gene="wecC"
                     /locus_tag="OQQ19_000764"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HCS1802485.1"
                     /translation="MSFATISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINR
                     GEIHIVEPDLASVVKTAVEGGFLRASTTPVEADAWLIAVPTPFKGDHEPDMTYVESAA
                     RSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTFPQQVGEQADVNIAYCPER
                     VLPGQVMVELIKNDRVIGGMTPVCSTRASELYKIFLEGECVVTNSRTAEMCKLTENSF
                     RDVNIAFANELSLICADQGINVWELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVA
                     QNPQQARLIRTAREVNDHKPFWVIDQVKAAVADCLAATDKRASELKIACFGLAFKPNI
                     DDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLTGLCTLAQLDEALATADVLVM
                     LVDHSQFKVINGDNVHQQYVVDAKGVWR"
     gene            complement(28833..29963)
                     /gene="wecB"
                     /locus_tag="OQQ19_000765"
     CDS             complement(28833..29963)
                     /gene="wecB"
                     /locus_tag="OQQ19_000765"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312746.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HCS1802486.1"
                     /translation="MKVLTVFGTRPEAIKMAPLVHALAKAPFFEAKVCVTAQHREMLD
                     QVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLAT
                     SLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLREN
                     VADSRIFITGNTVIDALLWVRDQVMSSDTLRSELVANYPFIDPNKKMILVTGHRRESF
                     GRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPF
                     VWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVTAGTVRLVGTDKQRIVE
                     EVTRLLKDENEYQTMSRAHNPYGDGQACSRILEALKNNRISL"
     gene            complement(30019..31065)
                     /gene="wzzE"
                     /locus_tag="OQQ19_000766"
     CDS             complement(30019..31065)
                     /gene="wzzE"
                     /locus_tag="OQQ19_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709589.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECA polysaccharide chain length modulation
                     protein"
                     /protein_id="HCS1802487.1"
                     /translation="MTQPMPGKPTEDAENELDIRGLFRTLWAGKLWIIGMGLAFALIA
                     LAYTFFARQEWSSTAITDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYK
                     EFVMQLASWDTRREFWLQTDYYKQRMVGNSKADAALLDEMINNIQFIPGDFTRAVNDS
                     VKLIAETAPDANNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVAKA
                     IYDRRMNSIEQALKIAEQHNISRSATDVPAEELPDSEMFLLGRPMLQARLENLQAVGP
                     AFDLDYDQNRAMLNTLNVGPTLDPRFQTYRYLRTPEEPVKRDSPRRAFLMIMWGIVGG
                     LIGAGVALTRRCSK"
     gene            complement(31077..32180)
                     /gene="wecA"
                     /locus_tag="OQQ19_000767"
     CDS             complement(31077..32180)
                     /gene="wecA"
                     /locus_tag="OQQ19_000767"
                     /EC_number="2.7.8.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--undecaprenyl-phosphate
                     N-acetylglucosaminephosphotransferase"
                     /protein_id="HCS1802488.1"
                     /translation="MNLLTVSTDLISIFLFTTLFLFFARKVAKKVGLVDKPNFRKRHQ
                     GLIPLVGGISVYAGICFTFGIVDYYIPHASLYLACAGVLVFIGALDDRFDISVKIRAT
                     IQAAVGIVMMVFGKLYLSSLGYIFGSWEMALGPFGYFLTLFAVWAAINAFNMVDGIDG
                     LLGGLSCVSFAAIGMILWFDGQTSLAIWCFAMIAAILPYIMLNLGILGRRYKVFMGDA
                     GSTLIGFTVIWILLETTQGKTHPISPVTALWIIAIPLMDMVAIMYRRLRKGMSPFSPD
                     RQHIHHLIMRAGFTSRQAFVLITLAAALLASIGVLAEYSHFVPEWVMLVLFLLAFFLY
                     GYCIKRAWKVARFIKRVKRRLRRNRGGSPNLTK"
     gene            complement(32420..33679)
                     /gene="rho"
                     /locus_tag="OQQ19_000768"
     CDS             complement(32420..33679)
                     /gene="rho"
                     /locus_tag="OQQ19_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017492510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HCS1802489.1"
                     /translation="MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAK
                     SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR
                     PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR
                     VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE
                     MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT
                     VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEE
                     FKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGE
                     IDAMEFLINKLAMTKTNDDFFEMMKRS"
     gene            complement(33764..33865)
                     /gene="rhoL"
                     /locus_tag="OQQ19_000769"
     CDS             complement(33764..33865)
                     /gene="rhoL"
                     /locus_tag="OQQ19_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rho operon leader peptide RhoL"
                     /protein_id="HCS1802490.1"
                     /translation="MRSEQISGSSLNPSCRFSSAYSPVTRQRKDMSR"
     gene            complement(34006..34335)
                     /gene="trxA"
                     /locus_tag="OQQ19_000770"
     CDS             complement(34006..34335)
                     /gene="trxA"
                     /locus_tag="OQQ19_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017375425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxA"
                     /protein_id="HCS1802491.1"
                     /translation="MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILD
                     EIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE
                     FLDANLA"
     gene            34466..35731
                     /gene="rhlB"
                     /locus_tag="OQQ19_000771"
     CDS             34466..35731
                     /gene="rhlB"
                     /locus_tag="OQQ19_000771"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlB"
                     /protein_id="HCS1802492.1"
                     /translation="MSKTHLTEQKFSDFALHPKVVEVLEKKGFHNCTPIQALALPLTL
                     AGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHA
                     DAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQ
                     VVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEY
                     IEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHL
                     AADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLP
                     DDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYNPDALMTD
                     LPKPLRLTRPRTGNGPRRTGAPRNRRRSG"
     gene            35865..37349
                     /gene="gppA"
                     /locus_tag="OQQ19_000772"
     CDS             35865..37349
                     /gene="gppA"
                     /locus_tag="OQQ19_000772"
                     /EC_number="3.6.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanosine-5'-triphosphate,3'-diphosphate
                     diphosphatase"
                     /protein_id="HCS1802493.1"
                     /translation="MGSTSSLYAAIDLGSNSFHMLVVREVAGSIQTLTRIKRKVRLAA
                     GLNSENALSNEAMERGWQCLRLFAERLQDIPPSQIRVVATATLRLAVNAGDFIAKAQE
                     ILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQTTSLFSL
                     SMGCVTWLERYFADRNLGQENFDAAEKAAREVLRPVADELRYHGWKVCVGASGTVQAL
                     QEIMMAQGMDERITLEKLQQLKQRAIHCGRLEELEIDGLTLERALVFPSGLAILIAIF
                     TELNIQCMTLAGGALREGLVYGMLHLAVEQDIRSRTLRNIQRRFMIDIDQAQRVAKVA
                     ANFFDQVEKEWHLEAISRDLLISACQLHEIGLSVDFKQAPQHAAYLVRNLDLPGFTPA
                     QKKLLATLLLNQTNPVDLSSLHQQNAVPPRVAEQLCRLLRLAIIFASRRRDDLVPEMT
                     LQANHELLTLTLPQGWLTQHPLGKEIIAQESQWQSYVHWPLEVH"
     gene            complement(37396..39417)
                     /gene="rep"
                     /locus_tag="OQQ19_000773"
     CDS             complement(37396..39417)
                     /gene="rep"
                     /locus_tag="OQQ19_000773"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HCS1802494.1"
                     /translation="MRLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCG
                     YQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMK
                     ANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGER
                     DRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQD
                     TNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQN
                     YRSSGRILKAANILIANNPHVFEKRLFSELGYGTELKVLSANNEEHEAERVTGELIAH
                     HFVNKTQYKYYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRV
                     LTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGY
                     EALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQL
                     FSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFP
                     YVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRP
                     EPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLKAMMAAKRGK"
BASE COUNT         9868 a        10809 c        10055 g         9039 t
ORIGIN      
        1 cagaaggtgg cgttaaatct cgcttcaggt gaagggaatt tctttatccg tcctggcggc
       61 gtgttttatg ttgcgggaga taaagtcggc atcattcgtc tggatgcctt taaaaccagt
      121 aaagagattc agtttgcggt gcagtcaggg ccaatgttat tagaaaacgg cgtaattaat
      181 ccacgcattc acccgaatgt tgcctcgcgt aaaattcgta acggtgtagg gattaataaa
      241 caagggaacg ccgtgttttt gttgagccag caggcgacaa atttttatga ttttgcctgt
      301 tatgccaaag cgaaactgaa cgttgagcag ttgctttatc ttgatggcac aatttcacat
      361 atgtatatga aaggcggggc aatcccgtgg caacgctatc cttttgtcac catgatttcc
      421 gtcgagcgga aaggttaagc attgtacact cgaggaggcc agacaaactg ggactggcta
      481 cacagctgga aaatcatcag ataaatgaag ggaaacaaaa atgaaaaaaa cgctcgcaac
      541 gttattttta ttaacgtgtc tgggatcatc atccgcctat gcggataacg ctttgatttt
      601 acaaactgat tttagcctga aagatggtgc cgtctcggcg atgaaagggg tcgcattcgg
      661 cgttgaccat aatcttaaaa tctttgattt aacacacgaa attccaccgt ataacatctg
      721 ggaaggcgct tatcgcctgt atcagactgc cagttactgg ccgcaaggtt cggtgtttgt
      781 tagcgtggtc gatccgggcg taggcactga ccgtaaatcg gtagtgctga aaaccaaaag
      841 cggtcaatac ttcgtttcac cagataacgg tacgctcact ttggtggcac aaactctggg
      901 tattgatagc gtccgggaaa tcgacgaaaa agctaaccgc ctgaaaggtt ctgaaaagtc
      961 atataccttc cacggtcgtg acgtgtatgc ctacaccggt gcacgtctgg cttccggggc
     1021 gattacgttc gaacaggtgg ggccagagct tccagcaaaa gttgtcgaac tttcttatca
     1081 gaaagcaaaa gcaacaaaag gtgaagtgaa gggcaatatc ccgattctcg atattcagta
     1141 cggcaacgtc tggagcaata tcagcgacga gttgctgaat caggcagaaa tcaaactcaa
     1201 cgacacgttg tgtgtgacca tttccgaagg ttcccagcaa aaatacgcag ggaaaatgcc
     1261 gtatgtcgca agcttcggcg atgtgccgga aggccagccg atggtgtatc tgaacagctt
     1321 attgaatgtt tccgtggcgc tgaatatgga taatttcgcg cagaaacatc aggttgcgtc
     1381 tggtgctgac tggaatattg atgtgaagaa gtgcgctaag taaggtgctg atgcggaatg
     1441 cggtgtggcg caccgcatcc cgcaacgtca caccgtctcc aaccgggcat aagccgccac
     1501 cagccattta ataccctggc cctggaatgc cacctgcaaa cggctatgtt caccgctgcc
     1561 ttccatattg acgatggtgc cttcaccaaa cttagcgtgg cgtacacgct ggccgagctt
     1621 gtagccgctg tcgttctcga ccatcggcgt acccatccgc tgatggctga ccgggcggct
     1681 taccgtggcg cgcaggcgca cctcttccac acactcttcc ggcagctcgc caataaagcg
     1741 cgacgggcga tggtaaacct ctttgccata cagacggcga gtttccgcgt aggtcagcgt
     1801 cagtttctgc atcgcgcggg ttacgccaac gtaggccaga cggcgttctt cttccagacg
     1861 cccgccttca tccagcgaca tctggcttgg gaacatgccc tcttccatac cgacgataaa
     1921 cacctgcggg aactccagac ctttcgccga gtgcatggtc atcagttgta ccgcatcctg
     1981 ccaggtatcc gcctgccctt cgcctgcttc cagcgccgca tgggatagga acgcctgcag
     2041 cggcattaaa tcttcgtctt cttcgttgta gctgaactgg cgcgttgccg tcaccagttc
     2101 ctctaagttt tcgatacgcg tctgaccttt ttcgcccttc tcctgctcgt acatggtacg
     2161 caggccggag tctttaatta cccggtcagt ctgtacatgc agcggcatat cggcagtttc
     2221 ctgcgctaag gcgtcgatca gttccataaa ccgctgtaag gcgctggcag cacgtccggc
     2281 gagggctttt tcctgcaaca gttcacgaca tgcctgccag agtgttaact ggcgatcgcg
     2341 cgatgtctga cgtaccacgt ccagcgtccg gtcaccaata ccccgcgttg gcgtattcac
     2401 cacacgctca aaggccgcgt cgtcgttacg gttggcaatc aggcgcagat acgagagcgc
     2461 atctttgatt tcctggcgtt cgaagaagcg catcccgccg taaatacggt acggcatact
     2521 cgcctgcaac agtgcttctt ccagcacacg cgactgggcg ttactgcggt agagaatggc
     2581 gcactcggca agcgccccgc cgttgtcctg ccaggttttg atgcggttaa ccacaaaacg
     2641 cgcttcatcg agttcgttaa aagcgcaata gagggaaata ggctcaccgt ccgcgccatc
     2701 ggtccacagt tttttaccca gacgcccgtt attgttttca atcagggcgt tagcggcgct
     2761 cagaatattg ctggtagagc ggtagttttg ctccagacga atagtttcgg caccggggaa
     2821 atcattaagg aaacgctgaa tattctccac ctgcgccccg cgccagccgt agattgactg
     2881 gtcgtcatca ccgacgatca tcactttgcc ggtgtcgccc gccagcaggc ggatccacgc
     2941 gtactgaatg ttgttggtat cctggaattc gtccaccagg atattggtaa aacgttcgcg
     3001 gtagtgttgc aggatatgcg gcttgttaag ccacaactcg tgagcgcgca gcagcagctc
     3061 ggcgaagtcc accaggcccg cgcggtcaca cgcttcctga tacgcctgat acaccttctg
     3121 ccaggtctgc tccaccggat taccgtagct ttgaatatga tgtggacgca ggccttcatc
     3181 tttctggctg ttgatgtacc acattgcctg gcgcggcggc cactgcttct cgtcgaggtt
     3241 catcgccttg attaggcgtt tgagcaggcg tagctggtcc tcgctgtcga ggatctgaaa
     3301 atcctgcggc agattggcgt ccatatggtg cgcacgcagc agacggtgcg ccagcccgtg
     3361 gaaggtgccg acccacatgc cgccctggct ggtgcccatt agctgcccga tacgatgacg
     3421 catctccgcc gccgctttgt tggtaaacgt caccgccata atcgagtatg gcaagcagtt
     3481 ttccacgctc atcagccagg cgatacgatg caccagtacg cgcgtcttac cactgcccgc
     3541 gcccgccagc accagaaggt tgctgcgtgg cgcggccacc gcttcgcgct gtttgtcatt
     3601 aaggctgtcg agcaggtaag aaacgtccat tggcaccgcc gcgtaaaaat aggttgggcg
     3661 gagaagcgca acgccctccg ccaaaaagct gggtatatat acagatttgc tgattatatc
     3721 agcgaggtca gagatgccaa ccgggaaatt tccagatgcg gcagtaaacg gctgtcccag
     3781 gtttgcatca gatcgccatt ttccggtctg atccaacagg cctgcattcc gctgcgaatt
     3841 gccccaccca cgtcagtggt gagatcgtcc ccaacatgta agatctcgcc gatcggcacg
     3901 ttgagttttt ccgcagccag aaagtacata tcgctgaacg gttttgagcg cccgtgcggg
     3961 ccagcgcgca gcacaaactc aaaataatcc cccaaaccaa acagttccgg ctgggcgtta
     4021 ccgttggtga tcgccaccag cggccatttc ttcgccagct gttttaaggt gtcgtgagtt
     4081 tgctgcggga cgtcgattcg gctgcgccat ttggcaaagt tgatcattgc tgcgtgtgcg
     4141 cctgcactgg cttcttcggc actcagcccg gcgtcgagca tcgcttgttc aatcgaacga
     4201 aaacgccagc gcgtcacgtc gtgataaatc tcgggttccg cttcccgtac cgcctggcgc
     4261 aggcgttgca gatcttcatt ctggaagctg cgcagcgccg gatgataatt ttgcacaaag
     4321 gtaagcgcct ctcgctcggt gcgcaaaatc accggacggt tatcgtaaag ggtatcatcc
     4381 aggtcaaagg tgagcgccga gatgcgcccc aaaggccggt aaaaacgcat tatttccccc
     4441 gtttggcgcg tggatgcgcc gcatcgtaca ccgaggcaag gtgttgaaaa tcaagatgag
     4501 tatagatttg cgtggtggag aggttggcat gacccagtag ctcctgcaca ccacgaagat
     4561 cgccgctcga ctccagcata tgcgtagcga acgagtgacg taatttatgt gggtgaacgt
     4621 gattattcag cccttgtttt atgccccatt cggcaaagcg tttctgcaca ttacgcgcgg
     4681 agatacgctt gcccagtttc gacagaaaaa gcgcgtcgtc ttcgctacca aacaggtcgc
     4741 gcaaatcaag ccagtgctca atccacgcca cagcgttgcg accaatcggc aggcggcgct
     4801 ctttgctgcc tttccccatt acccacactt caccagactc caggtcgagg tgtttgatat
     4861 ccagccccac cagctcggaa agacgcagac cagcgccgta catcacttcc agcattgcac
     4921 ggtcgcgtac agcgagggga tcgttgatat caatatccag cagccgattc atatcgtcga
     4981 cgtcgatatt tttcggcaga tgacgcggcg ctttcggtgc cgaaacacct ttcgccgggt
     5041 tagctttgag ttcgttctgg ctgaccagcc agtcaaaaaa gctacgtagc gcagaaagcc
     5101 gtaacgccag acttgctgct cccagccctt tacggcgact gcgtacagca aaattgcgca
     5161 ccatcgtcac atcacattgc tgccagcttt gcaggccgtt ttcgctggca aaattgatga
     5221 tcgcctcaag ctgacgctgg tagttaagca gggttatcgg gctaagctgg cgctccacgc
     5281 tcagataacg taggtagcgt tctacatcgg tgtgtaaatc ggtcatacgc gttcaatcca
     5341 acgctccaga agctccggca acatcagcgc aatttcatga agtaactgcg ttccttgccc
     5401 ttgttgatag tgactggcat cgcgactggt aaacagcacg acacccaaat cagcatcgct
     5461 tcccagcatc gacatcgcca ccgatcccac cgctttcgct tccggtagca ccaccagcag
     5521 ctctggtccg ttaagcggcc caagatagtg ctgttcctgc cccaaacgct gaatacgcag
     5581 cggttcgaaa gactgacggc ttaatgccag atgagtgtgg ttcgacggcg cacctaagcg
     5641 ccagcgatcc ggaaacaggc gcagactcgc acctgccagg ccgagatcgc gcgcccagcg
     5701 gtgaaagcgc atcagcatat cgtcgagact gctggcggcg gtgagactgc gctgcaggta
     5761 gagtaggcga taaaacaggc cttcgttggc gatagcctgt tccatcaaca gcgccatgtt
     5821 ctcttccaga acatgaatat gattacgtgc gcgggccatg tgccactcga ccaacgaaac
     5881 ggtgccgcgt accggatgtg gcacacgtat cgcttctact gcgcgcgcat tacggataaa
     5941 aaactcagga tttttaatca gataatcgac aaccgcccgg tcatcaagct ccgtgagtgt
     6001 ttcctgcagt tcttcccctg gttgcttcat agatgaataa atccgtcgta gacatgtacc
     6061 gccgggccag tcatatataa cgggtgaccc ggacctttcc aggcgatatc aagacgaccg
     6121 ccggggagtt ccacgcgtac ttcttcggcc agcaaacctt gctgaatccc tactgcaacc
     6181 gccgcacacg cgccgctgcc gcaggcctgg gtttctcctg ccccacgctc ataaacgcgt
     6241 aaacgaatat gctcgcgctt aaccacttgc ataaaaccga tattggcgcg ctccggaaaa
     6301 cgctcgtggc tttccagaac aggaccaagc gtttctaccg ccgcggtatc gacatcatcg
     6361 acctgaatca cgcaatgcgg atttcccatc gacaccacgc cgcataagat tgtctgctcg
     6421 gcggcgcgca taatataggt cttttccgct ttgttagcgc gaaacggcac agcggaaggt
     6481 tcgaagttgg gttcgcccat atttacgcgg accagatcat catcggtgac ggtcagaacc
     6541 atccgcccgt tggcggtgct gacgcggata tcgcgcttat tggtcagccc tttcaggcgc
     6601 acaaaacggg caaagcagcg cgcaccgttg ccgcactgcg ccacttcact gccatcagca
     6661 ttgaaaatgc gatagtgaaa atccagttca ggatcatacg gcggctcaac caccagcagc
     6721 tggtcaaacc ctacccccag gtgccgatcc gccagccgac gaatcagctc cggtgaaaaa
     6781 aagacattct gcgttaccgc gtcgacgacc ataaaatcgt tgccaaggcc atgcattttc
     6841 gagaactgca tcatttactc caatcacgcg ggtacagaaa ctgactttta gtaattcacc
     6901 tgggatggac catcccagtg gcgcgatcgt ttttatccgg caccgtggat tgcgtttgcg
     6961 tctctaccgg tttggtcggc ggcggtgcat ttttatctgc aggcgggaaa tagagcggac
     7021 ctttcagacc gcagcccgtc aggctgaaga gagtaagtaa tacagtgagt accttaaaca
     7081 cgtttttcat tatggattgc ctgtaaagtt catcgctttc tgctttctat catcgcagga
     7141 gaaggcgtaa aagcaagcgt ttagcgactc tttatgaagt ctgaaaagtg aggaaatgct
     7201 gcgagtataa cgcttactcg tgaggattta tgttctgctg gcagtttcgt gatcggcacc
     7261 tcgcgccagg atggctttat gcactatcgc aatgtggttt gtttgttggc ttttttagtt
     7321 ccgtcagcgt gaggatgctc gctcggtaaa cctgatcata atgtttacca gaaacaggga
     7381 aaggcgtggt gtaactgcgc cctaatgaag agacaaatct ttcgccacac agagacatca
     7441 ttattccggt gacggatgaa tcatgccgga acgcagcagc agaggtgcaa actttgaagc
     7501 cctgacccca tgccgctata ctgccgccat cacttaaaaa caggatacaa caatgaacga
     7561 cagtgaattt catcgcctgg ctgatcaact gtggctgacc attgaagagc atctggacga
     7621 ctgggatggc gacagcgata tcgactgcga aatcaacggc ggcgtgctga ccattacctt
     7681 tgaaaacggc agcaaaatca ttatcaaccg ccaggaaccg ctgcaccagg tatggctggc
     7741 aaccaaacaa ggcggctacc attttgatct gaaaggcgat gagtggattt gcgatcgcag
     7801 cggcgaaacc ttctgggatt tgctggaaca ggcggcgacg cagcaggcag gtgaaacagt
     7861 cagtttccgc taagattgca tgccggataa gcctcgcttt ccggcacgtt catcacgaaa
     7921 aatattgctg taatagcggc gtatcgtgat cctgattggc aggcggcatg ttaccgatag
     7981 attttgtgcg gaacggaatc acctgttcac gaccatcaac cttcacaatc tgatagaact
     8041 gcggcaggtt gaagttgatg aagcttgagc cgtaggtgaa gcggtcgtgc gatgacgagt
     8101 agaagcgact gacgtcacgc accagttcct ctttgctgcc ttcgcagtgg tgatacacct
     8161 caacccggtt gctttcgtca agaatgtaga tattaaagcc attctcgtct tgcgtttctt
     8221 cgaagaagaa ctggatgatc ccttcactag caaagccgtc caccaccgcc ggtaatttga
     8281 cgtgattggt ttcaacctgc actgacaggc cgtgcagttt gttatgcgaa atagcgccat
     8341 aaaactcgat ggcgttctcc agcttctgta ccgatacatt caggcgttcg aagaacaagc
     8401 cccaggtttg accagaaacg cgcagcgcct tgaaacgccc ggtttcctgg cgggtgctgg
     8461 aaaggcgcag ttcaatacac tcagaaacca gttgctgcac gcgagtacgg attaacccgc
     8521 gcagatgctg gctataacag aagacttcca cgctatctgg cggtgcggcg tcctgatgca
     8581 ttttgccgag aatagttttc agggcttcga tcatcgattg ctcgccgttg aagtgcagcg
     8641 tacgcacttc gttccacgag ttgcggtaca gcaggtcaac gctacctacc aggcaatttt
     8701 gattctcgcc aaagctgaag acatccagct tacggaaatc aaaatgcacc acctgattgc
     8761 ggaacgccgc tgtcgggtca tattccaggt taacgataat cgccagatgg cggatctcac
     8821 acgggctgta gagcgccttc ggtgtcggtg caggtaagcg cagcgggaaa tggtgcgaca
     8881 cgtcggcgac catctcctgc aacttaggca aatcgacaat gccgttacct ttaatataca
     8941 aacgggtgcg cgaggtcagc aggccgttaa accatgccca cgccaccagt ttgttcaggt
     9001 aacggttata ttccagcggc tgatggctga tgatcgactc aatatttggc gcgcggttat
     9061 acagatacca acctgaacgg ttagcacggc ccggcggcac ataaataaag gtcagattcg
     9121 gttccgagag atcgggtgaa atctgcgggt ttaccagcgt cactttacct ggtaatgctt
     9181 caaacgcggc atacagctta cgcgtcagca cgccgatatc ctgcggactg gcggagacgc
     9241 taaggttatt gcgacgcgca aagcggatca gattacggta gctctgcatc atcgcgtcga
     9301 gcaactcgtt gtgcgcctca cgcacctgat caatcttcca gttagcgcgg ttatcgagca
     9361 ttgccagacg agcttcgtcc caaccccact cgctcactaa ctggctcaac actgcgcgac
     9421 gccagcctac gcaggcgcgt tcacggctga gcttttcgca cacttttaaa tagaagcagc
     9481 gacgtactaa atccagacgg gtaaaatctt caatcgccgt caggtattca gtaacacgct
     9541 ccagcatcat gcagtatgga tcgagaccaa acgatacaat ctcaccgtcg tgcaaacgct
     9601 gtttgatatc tttcgccagc agacgtgggt tcgggtattc ccaggaatag gcttccagca
     9661 gcagtgtttt cagtaccgct ttgtatgggg aatcgatact cttgtagagc tgccaaaggc
     9721 tggcaccaaa gtactcttca gcagaaagcg agcttaagcc accgagatcc agccattcat
     9781 ttggcgtcag cacgccctgc gcgtaaagcg tcatcacata gtcgtcgtaa tgctcttctt
     9841 cgtcgcacgg caccatattc cacagaatac gcttaccggc gagacgcacg gcggtacgat
     9901 aaaattcgtc aagcagcagt atatgctggg tggagccaca atcttcgccc cccaagctgc
     9961 cgctttcatt atgacggaag cggttttcat caatcaggaa gaagctgact tccacaccca
    10021 gcgaggcggc ccagctttcc agcagactac atttacgttg tagtaactgg cgctcttcgc
    10081 tatcgagcca ggattgatga cagacccaga tatccaggtc agaggaacaa ctttgcccta
    10141 cggacgaggt gctgcccatg gtgtatacac cagtaattgg aagctcacct ttcggtggat
    10201 cctgtactga cattccacga tacagttcaa gctcgttcag gtagtggcgt tgagtttcat
    10261 caggcgtgta aaggcaaatg cctttgggaa cgttaccatc aaggtaaccc ggcattagcg
    10321 gatggtgata gtgcaacaat gtcggcagta gactgtagac ctgttggaat gcaggcccca
    10381 tagcagcaag cgcgcgatcc acacgcaatt gatttatggc atccagtctc tgtttcagag
    10441 tctcaatata gaggtacaag acgtatcgcc tgatttgcta cccgtcatga ctgtgattcc
    10501 gccaacatca acggtaacac gcggcattcg ggatatttcg tatgtcaaag gtaaccgtta
    10561 ccacttttcg cgcctggttt ttttagtttc acgacgaaaa aatggtctaa aacgtgatca
    10621 atttaacacc ttgctgattg accgtaaaga aagatgcgct acatacaagt gtagcaccgt
    10681 ttattctctg taaattcctt attacgacgg cgtgaaacgc ctgtcaggat ccactgccag
    10741 acctcatttt acggtttgcg caggcgtcta cgtttcacca caacactgac atcactctgg
    10801 caaggatgtt aggatggacc acggatgata atgacggtaa caagcatgtt agacaatgtt
    10861 ttaagaattg ccacacgcca aagcccactt gcactctggc aggcacacta tgtcaaagac
    10921 aagttgatgg cgagccatcc gggcctggtc gttgaactgg taccgatggt gacgcgcggc
    10981 gatgtgattc ttgatacgcc gctggcgaaa gtaggcggaa aaggcttatt tgtaaaagag
    11041 ctggaagtcg cgctcctcga aaatcgcgcc gatatcgccg tacattcaat gaaagatgtg
    11101 ccggttgaat tcccgcaagg tctgggactg gtcactattt gtgagcgtga agatcctcgc
    11161 gatgcctttg tgtccaataa ctatgacagt ctggatgcgt taccagcagg cagtatcgtc
    11221 gggacgtcca gtttacgtcg ccagtgccaa ctggctgaac gccgcccgga tctgattatc
    11281 cgctccctgc gcggcaacgt cggcactcgc ctgagcaaac tagataacgg cgaatacgat
    11341 gccatcattc ttgccgtagc cggactaaaa cgtttaggtc tggagtcccg cattcgcgcc
    11401 gcgttaccac ccgagatttc tcttccagcg gtaggacaag gtgcggtcgg tattgaatgc
    11461 cgccttgatg atgcacgcac tcgcgagctg cttgccgcgc tgaatcacca cgaaactgca
    11521 ctgcgcgtta ccgcagaacg cgccatgaat acccgtctcg aaggcggatg tcaggtgcca
    11581 attggtagct acgccgagct tattgatggt gaaatctggc tgcgtgcgct ggtcggcgcg
    11641 ccggacggtt cgcagattat tcgcggtgaa cgccgcggtg cgccgcaaga tgccgaacaa
    11701 atggggattt cgctggcaga agagctactg aataacggcg cgcgcgagat cctcgctgaa
    11761 gtctataacg gagacgcccc ggcatgagta tcctggtcac ccgcccgtct cccgctggag
    11821 aagagttagt gagccgtctg cgcacactgg ggcaggtggc ctggcatttt ccgctgattg
    11881 agttttctcc gggtcgacaa ttaccgcaac ttgctgatca actggcggcg ctgggggaga
    11941 gcgatctgtt gtttgccctc tcgcaacacg cggttgcttt tgcccaatca cagctgcatc
    12001 agcaagatcg taaatggccc cgactacctg attatttcgc cattggacgc accaccgcac
    12061 tggcgctaca taccgtaagc ggacagaaga ttctctaccc gcaggatcgg gaaatcagcg
    12121 aagtcttgct acaattacct gaattacaaa atattgcggg caaacgtgcg ctgatattac
    12181 gtggcaatgg cggtcgtgag ctaattgggg ataccctgac agcgcgcggt gctgaggtca
    12241 ctttttgtga atgttatcaa cgatgcgcaa tccattacga tggtgcagaa gaagcgatgc
    12301 gctggcaatc ccgcgaggtg acgatggtcg ttgttaccag cggtgaaatg ttgcagcaac
    12361 tctggtcgct gatcccacaa tggtatcgtg agcactggtt actacgctgt cgactattgg
    12421 tcgtcagtga gcgtttggcg aaactcgccc gggaactggg ctggcaagac attaaggtcg
    12481 ccgataacgc tgacaacgat gcgcttttac gggcattaca ataactctca taacaggaag
    12541 ccataatgac ggaacaagaa aaaacctccg ccgtggttga agagaccagg gaggccgtgg
    12601 acaccacgtc acaacctgtc gcaacagaaa aaaagagtaa gaacaatacc gcattgattc
    12661 tcagcgcggt ggctatcgct attgctctgg cggcgggcgt cggtttgtat ggctggggta
    12721 aacaacaggc cgtcaatcag accgccacca gcgatgccct ggctaaccaa ctgacggcat
    12781 tgcaaaaagc ccaggagagc caaaaagccg agctggaagg cattattaag caacaagctg
    12841 cacagcttaa gcaggcgaat cgtcagcaag aaacgctggc aaaacagttg gatgaagtcc
    12901 aacaaaaggt cgccaccatt tccggcagcg atgctaaaac ctggctgctg gctcaggccg
    12961 attttctggt gaaactcgcc ggacggaagc tgtggagcga tcaggacgtc acgaccgctg
    13021 cagcgttgct gaaaagtgca gatgccagcc tggcggatat gaatgacccg agtctgatta
    13081 ccgttcgtcg ggcaattacc gatgatatcg ccagcctttc tgcagtttcg caggtggatt
    13141 atgacggcat catccttaag cttaatcagc tttcaaatca ggtagataac ctgcgtctgg
    13201 ccgataatga cagcgatggt tcgccgatgg attccgatgg tgaagagctt tccagttcca
    13261 tcagcgaatg gcgtatcaat ctgcaaaaaa gctggcagaa ctttatggac aacttcatta
    13321 cgattcgccg tcgtgatgac accgccgtac cgctgttagc gccaaatcag gatatctatc
    13381 tgcgcgaaaa tattcgctct cgcctgctgg tcgcagcaca agctgtaccg cgtcaccagg
    13441 aagagactta tcgccaggcg ctggagaacg tctccacctg ggtacgtgct tactacgata
    13501 ctgatgatgc caccaccaaa gcgttcctcg acgaggtgga ccagttaagc cagcaaaata
    13561 tctcgatgga tcttccggaa accctgcaaa gccaggcgat gctggaaaaa ctgatgcaga
    13621 ctcgcgtgcg taacctgctg gcacaaccgg cagcagggac aacggaagct aaacctgcac
    13681 ctgcacctgc acctgcacct gcacctgcac ctgcacctgc acctgcacct gcacctgcac
    13741 cgcaaggtga tactccggca gccgcgccgc aaggagaata accatgctaa aagtgttatt
    13801 actctttgtt ttgctgattg cggggatagt ggttggcccg atgattgccg gtcatcaggg
    13861 ttatgtgctg atccagaccg acaactacaa tatcgaaacc agcgtcacgg gcctggcgat
    13921 catattgatt ctggcgatgg tagtgctgtt tgccattgag tggctactgc ggcggatctt
    13981 ccgcactggc gcgcacaccc gtgggtggtt tgtcgggcgt aagcgtcgcc gtgcacgtaa
    14041 gcagaccgaa caggcgctgc tgaaactggc ggaaggcgat tatcagcaag ttgaaaagct
    14101 gatggcgaaa aatgccgatc acgctgaaca accggtggtg aactatctac tggctgccga
    14161 agccgcgcaa caacgtggtg atgaagcgcg cgccaaccaa catctggaac gcgcagcgga
    14221 gctggccggc aatgacacca ttccggtaga aatcacccgt gtacgtctgc aactggcccg
    14281 taatgaaaac catgctgcac gccacggcgt ggataagctg ctggaagtta cgccacgcca
    14341 tccggaagta ttacgtctgg cggaacaggc gtatatccgc acaggtgcat ggagttctct
    14401 gctggatatc atcccatcaa tggcgaaagc ccatgttggt gatgaagaac atcgtgcaat
    14461 gctggaacaa caggcatgga ttggcctgat ggatcaggcg cgtgccgata acggtagtga
    14521 aggtttgcgt aactggtgga aaaaccaaag ccggaaaacg cgtcatcaag tagcgttgca
    14581 ggtggcaatg gcggaacatc ttattgaatg tgacgatcat gatactgccc agcaaattat
    14641 catcgatggc ctgaaacgcc agtacgacga tcgcctactg ctgccgattc ctcgactgaa
    14701 aaccaacaat ccggaacagc tggaaaaagt gctgcgccag cagatcaaaa acgtcggcga
    14761 tcgcccgctg ttgtggagca cactgggcca gtcactgatg aagcacggag aatggcagga
    14821 agcatcgctc gccttccgcg cagcgctgaa acaacgtccg gacgcctacg attacgcatg
    14881 gcttgccgac gcgctggaca gactgcacaa gccggaagaa gctgcagcga tgcgtcgcga
    14941 cggtttgatg ttaacgttgc agaacaaccc accacagtag ttccttctca cccggaggca
    15001 agcacctccg ggacctttct gatgcataaa aaaacgcctg ctcttattac ggagcaggcg
    15061 ttaaaacagg tctgtatgac aacaagtggg tgcttcactc aacgttgtgt ccatggtgtc
    15121 tgatgaggca taagcgacat ctgtcagtgg acgataagca ccgtaaacgg ctctgcgtca
    15181 ttccggagtt tatgaggcac taaggcgaac ataagagatg gaatgagcat ctactcgttt
    15241 attatgccac agagaatcgg gaaataacat cccttaacac ttgttatgag ataattctgt
    15301 aatcctcttt gcttcctgag taataacttc ctgagtgaat atttaacctg agcttgatcc
    15361 tacacatact tattatgaat gataaaattc attcaattaa taacacatat attaattgcc
    15421 gttaaaacta aaaaagcatc aataatcaac gcgatataat aaacctgcct tacatatcaa
    15481 ctgcgccaga ggtaggattg aaaacgctct cctgattttc caattcattt tctggataaa
    15541 taaataattt atttttgtca ctattattta tgtaatcatc ctgtcaggga gagggatctc
    15601 aattatcaat gcttaattac gtcatcattt tgatgacatg aaaccggagc attttgcatg
    15661 gaattttcgt tttcacccaa acttcttgtt gttgctgtcg ccgccgctct tcctctcatg
    15721 gccagcgcag cagatacccc gtcaactgcc accgcacgca aaggctttgc cggatacgat
    15781 cacccaaacc agtatccaca gaacgctgca atttattgaa tttgcacgat catgtaggcc
    15841 ggataaggcg tttacgccgc atccggcaat caaccgcagg cggccacaaa atggccgcta
    15901 ttttacttat tcaccaccag caaatgtgcc tgcataatgt cactggccgg gcgaccgtgc
    15961 gccagcaaat cagccattgc tttaagatat ggcggtagat ggcggaaata acgctgatac
    16021 ccggcacaca aataattcag ccccggtttg ccgctggcat cgagcatgaa gcggtgtttc
    16081 gggcagcctc cccagcacgc ttttaacacg ttacaactgc gacactgcgc cggtaattgc
    16141 ttaaatttat cttcaccaaa cacctgctgt tgcggggaat cgatcatttc tgcaattgtt
    16201 tgctgatgca tattccccag ccgatattgc ggataaacat agtgatcgca ggcgtaaacg
    16261 tcgccgttgt gctcaacaat caccgagcgc ccacaggttg gctgatgatg gcaaaccgca
    16321 cccggcgcac cgacaaaatt ggcaaacgcc cattcgatat tcatcacgaa aatcttgccg
    16381 acgtcgcgtt tgatccagtg gtcaaaaatc gccaccagaa attcaccaaa ttcatcgggg
    16441 cgcacagacc attccgtcag ttccccctga atatcaccag gcgcatgtag tttcagtcca
    16501 tcgctggcag ctgtttcatc agccaggcgc tcgaccaccg gaataaactg gatgaattcg
    16561 actcccgcat cgcacaaaaa atcataaacc tgcaacggtt gctgcgcgct ggtgcggttg
    16621 acgcagacca gcacgttata gtcgacatga tgtttttgca gcagcgtcag ggcacgcatc
    16681 accagcttat gcgttggtct gccacctttg gtcacgcgat attgattgtg gatctcagcc
    16741 ggaccgtcca gcgataaccc aacaagaaaa tgattttctg ccagaaatgc acaccattta
    16801 tcatcgagca gcacgccgtt agtctggaag ctgttactta tcttcctgcc agcaccgtat
    16861 ttcgcctgta actttacggc acggcggtaa aaatccagcc cgagtaacgt tggttcgccg
    16921 ccctgccagg taaaagccac ttcgttttgc ggttcgctgg cagcgatata gtgacggaca
    16981 tacgcttcca gcgtgtcatc gtccatatgc gtgactggct tttcgcggta aagggattgt
    17041 ttttcgagat aaaaacagta gtcacagttc agattacaat cggaaccact cggtttcgcc
    17101 atcacatgaa aagcacgcgt tggaacctgt tgcagcatgg tcactccttg cctgaagtca
    17161 tccttcaata cgttaagggc gaaatcatac cgtggggcaa tgagttatta cgggcgttta
    17221 ttgcgaagag agggtgacga aatgcacaga aaacaaaaaa ccccgccgaa gcggggttca
    17281 aaattggtcg gcgagagagg attcgaacct ccgacccact ggtcccaaac cagttgcgct
    17341 accaagctgc gctactcgcc gaaatactgc tttttgaatt tttagttcaa ttatttaaag
    17401 tcgtggtgcg agggggggga cttgaacccc cacgtccgta aggacactaa cacctgaagc
    17461 tagcgcgtct accaattccg ccaccttcgc attgtcacaa cttctaataa tggggtggct
    17521 aatgggattc gaacccacga caactggaat cacaatccag ggctctacca actgagctat
    17581 agccaccact acaaatcttg ttacgcggta ttactaccac cgcagctcaa gcgccgggac
    17641 taaatggcgc gcccgacagg attcgaacct gagacctctg cctccggagg gcagcgctct
    17701 atccagctga gctacgggcg cttagcgccg ttgcgggggt ggataatacg gacttcccac
    17761 ccctctgtct agtccctttt taaataaatt gcgcgtttgg ttacggtttg tgcgttttgc
    17821 tgcttattcc tccagtttat gcgctttccc gtggcgatta aggccaaaaa ctttataaat
    17881 cgccgtcacc gccagcataa agatgatgcc aacaaacagc gacatacgcg tatcttcatt
    17941 aaagtacatg ccgatcaaaa cgcaaatcag gaatgccatt gttacgtagt tggcccacgg
    18001 gaacaggatt gagcggaacg gatggctggc aatcgccgct ttatgtgcac gccgaaaacg
    18061 cagctggctt atcaatatca caaaccatgg caccatcccc ggaagcacgc tggcactgta
    18121 gacgtagaca aacacacgct gcggattggg aatgatgtag ttcaggcatg agccaattag
    18181 cagaatagca atagatactg ccacacccgc aactggtacg ccgtgacggg aaactttcgc
    18241 catcgccgcc ggtaactgac ggtttttcgc cagtgcgtag agcatacgtc cgcaactgta
    18301 catgccgctg ttacagccag agagcgcagc cgtcagcacc acaaagttga taatgcccgc
    18361 cgctgcggta ataccgattt tggcaaaagt cagtacgaac gggctgccgt tgctgccact
    18421 ttcattccac gggaagatgg tgacgataac gaaaatcgcg cctacgtaga aaatcaggat
    18481 ccgccacagc actttgccta cggcactgcg caacgtcacc tgcggattct tcgcttcacc
    18541 ggcagtaatg ccaatcagct ccacgccctg gtaggacgcc accacaatac acagcgcggt
    18601 caggaaccct ttccagccac ccgcaaagaa accgccatgc tctgtgagat tgctaaaacc
    18661 aatcgactgc ccgccattgc caaagccaaa gaaaatcacg cccaggccaa tgacaatcat
    18721 cacgataatc gtggtgactt tgatcatcgc gaaccagaac tcgatttcgc cgtacaaccg
    18781 caccgccgcc agattcgcca acgccaccag cgccactgcg atcaatgcgg gtatccactg
    18841 cgccatctcc gggaaccaga actggacata aacgccaacg gcggtgattt ctgagatccc
    18901 caccgccatc cacataaacc aataagacca ggcggtgaga taaccaaaga acgggctcat
    18961 ataacgatgc gcataaacgg cgaacgaacc ggtaaccggt tcgaggaaca acatttcgcc
    19021 cattgaacgc atgatgaaaa agacgaatag cccggcgatg atataggcca acaatacgga
    19081 tggcccggcc catttcaagg tactggcggc ccccataaac aggccgacgc caatggtgcc
    19141 ccccagggcg atgagttcga tatgtcgagc ttccagccca cgctgtagct ctggtttgtt
    19201 atctgccata aatcctcgtg ttgtgtttgc atgctttccg gtgttaccgg ttatcgttat
    19261 gggtacatcg agtgttgcga atgttttcgt aattcaggag aaatggcaaa taaagcatta
    19321 aaaatttgaa tgctttgtgt aataaaaaag cagacaggcg acggagtgac cactccgtcg
    19381 ctttacaaag agaggaaaat cagaggttgc cggtgtagtg ccagcgtaaa taacgcagca
    19441 aacgaagctg acgcttaatg cggctcggct gcgaaagcag gcggtagagc cactccagtc
    19501 ccagcgtttg ccagattttc ggtgcgcgtt ttacgtgacc ggtgaaaaca tcgtaagtcc
    19561 cgccaacgcc catatacagc gcatctggat gcaccagacg gcagtcgcgc atgaagatct
    19621 cctgctttgg cgatcccatc gcaacggtga cgatttgcgc tccgctggca tgaatgcgtt
    19681 caaacagcgc ctgacgctgc tcgggtttaa aataaccatc ctgactgcca acgatattca
    19741 cattccactg gttgcgcagt ttagcttcag tttgcgccag cacttcaggt ttaccgccca
    19801 caagaaatac cggcgtccct tctttgcctg cgcgcgccat cagctcttcc cagagatcgg
    19861 caccggcaac gcgggaaacc tgcgcctgcg ggtacttttt acgtactgaa cgtacaacgc
    19921 tgatgccatc cgcatattta aattcggcag cgttaattaa ctccctgacc tcggcgttat
    19981 cttcaatggt cagcattttt tcagcattaa tggcaaccag cgttccctgc ttaagctgcc
    20041 cgtcagcaaa cagataatcg agggcgtgct gcatatcacg ccaaccaatc aactgtaagc
    20101 cacgcagcgt ataggtcggt gccgtggtgt tgttattcat tgttatcctt caacctgcgt
    20161 ccggagcgat gattttgtac gtttatgaat gagtccggcg ctttcaaaaa gccagtacaa
    20221 cagttttgcg atcatcagac atgcgccgaa gaccacgata aaaaagacta cgcgtgagac
    20281 aaacgaatcc agcccttcac gtgccagcac gatcatattg aagatcgccc caaagcagaa
    20341 actgtgcaat atcgcagcct tatagcgatt aggctcgcgg ttgcccagct catacagcca
    20401 gtcgaaccat ttgatgatca gaccaaccac gatcgccccg agcgggatga acaacgcgcc
    20461 gcccatcacc accagtgagc ctataagcgt aggcgagatc gccagtccgg agtggttatt
    20521 cagcacttcc ctggtaaagt agttggctga gttcagcacc atactcgggc gacccggcca
    20581 cagccaggaa gggataaaga catagaaatc gcggacaatt ggagccaggc cctggaagtc
    20641 gatgttgtcg tagttctgca acagcaacgc cagattctcc cacggcgaga aggtgtcgcg
    20701 agtgagatag agaaacgtat agaacgcttc atcgccgctc acattcattc catagcgttt
    20761 tagcgccagc cagaacatgc ccacaatccc cagcacgccc gccgccgcca gcatccacaa
    20821 cgaaatccag ccgcgaataa tgccaataaa caggaagata gcgaatgcga tgatgatatt
    20881 ggcgcgagtg ccgccgacaa tcatataagt cagcaagcca aaggcgaccg tgctgacgag
    20941 gaaaaacagc cacgctttgc tatcctggcg cagaaagtag accaccagca tcgccgggat
    21001 gaaaaagtaa aagaagcgtt ttaacgccac gccggagact tcactggaga agatctgact
    21061 gtaggagtta agccggaaca gcaaaaagcc gttgtgcatg aagaagatgc cgacgcttac
    21121 cagcgcgatg cccatcagga tcacccacgt aagattggtc tccacgcggt tcatggtaaa
    21181 cagcggacgg cgcggtacat cagcaacgcg tttgcgtagg cgggttttgt aggtgacata
    21241 gtaaaccgcg tagaagcagc ccgcagaaag caacgcctgc aacaagattt ctggcggcgc
    21301 gacaccaaca tcaaagcgaa ataccagcac gctggtcagc gggaagccga agaaaaaggt
    21361 gagcaaaaac agcaatgaaa agaagacatt gaagttaaag cgcacacggc gaaactcaaa
    21421 ccaagtcagc gtggcaataa acagcgtgca gagcagccag accacaaaca ggccactgaa
    21481 ttgcagcaga ctcatgcgac ctccccggcg gcaatcgcca acacccgctg ccagccttgt
    21541 agatagttag ggctaaagaa ggcaatggtg tttttatcca ccgacgccaa ctggcgctgc
    21601 gcttcacgca caatatcctc gttgagatcg tcggtagtaa acagcaccgg caaatgctgt
    21661 tccgtcatat cctgccagaa cggattttcc cggttaagca cacaaggaat gcccgcctga
    21721 atcagtaagc aaagcgtacc aatgccctgc tggcgggcaa aaataaagta accaagatcg
    21781 cactgacgaa gtagcgccag ataggcgtca aattccagtt tttcgctcaa aatttgcaga
    21841 ttttcttcgc tgaataactc cagccccgcc tgacgaactt cctcaatgta cgcttcgtta
    21901 ttaggcggat atcccatcgg caccaccact tttaccgtat cgccaaattg ctgatgaacg
    21961 gcgcgcaagg cagcaatatg gtcattgctg cggtcaccgg agttccccac cagaatggtc
    22021 attttccctt cacgttgccg atcgttcgcc atcgtattga gagaagggtc catccgcgtc
    22081 gggaagtaca gcagttcgcc ccgcaccttt ggatgcgttt tggcaaaaaa gctcaaatca
    22141 ccgcgggtgg caaatacaca gccgactcgc ttttgcgcca ggcgacgtag cgggtaaaaa
    22201 agcttatatc tcaagccact ggaaagctca tacaggtctg ccccccagat atgccagaaa
    22261 aactggctgg gcttaatgcc accactcagc agagccagcc acagtgtggg attgaactga
    22321 ccgtggaaaa aaaatcgctg ctgacggtta gcttttgctt tcgcgatgac cgcttccgcc
    22381 agcgattttt tcccagggaa aaattgcaca gaaagcgccg gacagctatc acttaagccg
    22441 tcgtccttgc caacaaccat aaactcgcgc gcgtgctcgc tcgtcgcggc cagcgcgtca
    22501 ttgaaaaacc gcaaaacggt tcggttatgg tgagggatat ccgatcccag tacgtgaatc
    22561 agtacagtca tgcccgccta cgccagagta aaaacacgcc acaacaaaga gaaaaataga
    22621 cgatataagt tgccatatat gcctgcgccg cgcccagtgc accatgcgca gggattagcc
    22681 agtgggcaaa taccatcaat aaagtgaact ggctgacttc cgccagaata taaaaccgca
    22741 gtgacgcttt ggcgatcacc agataaccaa agacataagc gcccactttt agcacatcac
    22801 ccactaactg ccaggcaaag agatcgcgca tagcggtaaa tttattcgac aacagcaacc
    22861 agatagcaaa atcacgcagc aaccagacgg taaaactcgc cgccgccact gccggtaaga
    22921 cgaattttag cgatttaacc acttcccggg tgatatcgcg cttttccgtt agccgcgaca
    22981 acgtgggcag caaatatacg ctgaacgatg ccgtaatgaa ttgcaggtag gcatcggaaa
    23041 tactgctcac cccttgccag atccccactt catcccagct atactgcgcc gccagcagtt
    23101 tacgcatcat gatgtaagca acaggcaagg tcaccgacgt aatcaacgcc atgagcgtaa
    23161 atttgctcaa ctgccctgcc agaccgttat cccagctggg tttcagatag cttaacggga
    23221 tgacaccacg tttgatcaac atgatggcgg caggaattac caccagcgcg ggaatcagcg
    23281 ccagacccag caacgcccct tcataaccgc ccaaacggta actgacgtag tacgcgagaa
    23341 cgccaatcaa gctgccgaca atcagcgata acgcattacc tgcggcatcg cgaaagcctt
    23401 tcatcagcgc cagtaacagg ttgccccagg cgatccccat ttgcaccagc gccactaaac
    23461 gcaccagccc ctgatagtcg gtattaccaa acaatccctg gctgattggc gcagctgcca
    23521 gcacaaaaac cagcgccatc agcgtagaga aaccaagtac catcgctgat gaagtgccga
    23581 ccacgcggcg cagctgttgc ggattatcat ggtactgggc aacgtatttg gttacaccgt
    23641 taaagatgcc agccccggca agcacgccga gcacggtaat caactggcgg aaatttgccg
    23701 ccagcccaag ccccgccgga ccaaatgaca ccgccagcaa cttaccgacc agtaacccgg
    23761 caccaatctt gaccagtgta ctggccgccg tccacaagga cgcttttgcc aacgacatat
    23821 caggagaagt agttcaacaa agtcgcaatt accgtacgct gattgacggg cgacaggttg
    23881 tagaacagcg gcaggcgcag caggcgctcg ctctctttgg tggtgtagcg atcttcaccg
    23941 tggaactcac caaagtgttc ccccgcaggg caaccgtgca gcggaatgta atgaaacacc
    24001 gccatgattt ccgcttcttt cagaaagtta atcaacgcgc tccggtcatc aatatcccgc
    24061 agtttaatgt agaacatatg cgcgttctgc acgcagccat caggaatcga cggcagctcg
    24121 atacgcccgg ctttcgccag aggcgctaac gcatcgtagt aattttgcca cagcgccaga
    24181 cgttgctggt tgatacgatc cgctgcttcc agttgcgccc acaggtatgc agcttgcaga
    24241 tcggacatca aatagctgga gccaatatcg cgccaggtat atttatcgac ctgaccacgg
    24301 aagaactggc tgcggttagt gcccttttca cggatgatct cggctcgttc gattaacgct
    24361 ttatcgttaa tcagcgtcgc gccgccttca ccacccgccg tgtagttttt ggtttcatgg
    24421 aagctaaagc agccaatatg accaatggtt cccagtgcac gccctttgta agtggacatc
    24481 acgccctgag cggcatcttc caccacaaac aaattatgct ttttcgccaa cgccataatg
    24541 gtgtccattt cgcaggccac acccgcgtaa tggaccggca cgataacgcg cgttttgtcg
    24601 gtgatcgctg cttcaatcaa cgtttcgtcg atgttcatgg tgtccgggcg aacatccaca
    24661 aagacgattt tcgcgccacg cagcacaaag gcattggcgg tggagacaaa ggtgtagctc
    24721 ggcatgatca cttcatcgcc aggctggata tcgagcagca gcgccgccat ctccagcgaa
    24781 gcggtgcagg acggcgtcag taacactttg gcgctgccaa aacgttgctc cagccactgc
    24841 tggcagcgac gggtaaaacc gccatcgcca cacagtttgc cgctacccat tgccgactgc
    24901 atatagtcga gttcggttcc caccaccggc ggtgcgttaa atggaatcat gtgatcacct
    24961 gtataaccag tacgcggtgc tttctacatt cgcaccactt tgtatgtatc gtttaagcgc
    25021 ggcggtgttg cccatttggg tcgccacccg caaagttgtt ttaccgcgag catacgccca
    25081 gtttagcgcc gtttgcatca gctcagcacc tgcaccgcgt ccagccagca ggccaattcg
    25141 cgcatctgtc gcattgagtt cccgtaaaga gacatagccg cgaatatcgc cggacgccgc
    25201 acgtagaatc agacattgat gatcaaaggt gccgcgcacg gcattttcaa tccactgtgc
    25261 ataaaagcga ccgctggcgt caggcgcata ccacggcgca cgaaaacggc tttgcgcaaa
    25321 tgcggcgcta gctaactgac gtaatgcggg aatatcggtc tcttgtgcca cgacagcacc
    25381 gctatcactg acattgttca cgggtagcgc caaatcaact tcaccttcta ccagggagaa
    25441 tcccagctgt tgcagggcat ccagttcacc cgtatttgat gccgcaattt tggcctgcac
    25501 ccgtgaccac ggcgctaacg cgtctggcgt caggagcggt gcttcagacg taatgcgcac
    25561 gatggcgctg ttaacaccaa agaaggcgtt ttcccaggtt agtggctcaa tactggcgcg
    25621 gacgggcacg aagtaactcc agcagatatt ggccgtagcc agttttcgct aatgaactgg
    25681 cagcacgctt cacaccctcg tcatcgagcc agccgttacg ccaggcgatc tcttccaggc
    25741 aggcaatctt aaagccctgg cgtttttcta ctgtctgcac aaaggtactg gcttcaatca
    25801 ggctgtcgtg agtgccagtg tccagccagg caaatccgcg cccgagcagt tcaacggtca
    25861 ggttgcccgc ctcgaggtac atctggttga tggaggtaat ctccagttca ccacgctccg
    25921 acggcttcac ctgctttgcg tactccacga ctttactgtc gtagaaataa agcccggtca
    25981 ccgcccagtt tgacttcggc tgttttggct tttcttccag cgagatagcg cggaaattgt
    26041 cgtcaaactc caccacgcca aagcgttcct ggtccatcac ctgatagcca aataccgtcg
    26101 ccccttccgt gcgcgccgca acatgacgca gcttcggact gaagccctga ccgaagaaga
    26161 tgttatcgcc cagcaccaga caagaaggtt caccgttgag gaaggtttca ccgatgataa
    26221 aggcctgcac cagaccgtcc gggctgggct gttcggcgta ttccagctgg ataccgaact
    26281 cactaccatc gcccagcagg cgctggaaat aacctttatc ttccggcgta gtgatgatga
    26341 gaatttcgcg gataccggcc aacatcagca ccgacagcgg atagtaaatc attggcttat
    26401 cgtaaatcgg caacagttgc ttcgatacgc cgcgcgtaat cggatgcaat cgggtgccgg
    26461 aaccgcccgc caggataata cctttcatgt ttgcctccgc tgaaaattag cctttcagac
    26521 ctaaacgctc gccctgatag ctgccgtcct gcacctgctt ccaccagctt tcattagcca
    26581 gataccactg caccgtttta cgcattccac tttcaaaggt ttcctgtggc agccagccaa
    26641 gttcacgggc aattttcgaa gcatcaatgg cataacgcag atcatgcccc ggacggtcag
    26701 cgacaaaggt gatcaagtca cgatagtgca ccacgccgtg cggcttgttc ggagccagtt
    26761 cttccagcag ctcgcaaatg gtttccacaa catcgagatt cttacgctcg ttgtgaccac
    26821 caatattata ggtttcaccg actttcccgg tggtcgccac gcaatacagc gcgcgggcgt
    26881 gatcttccac atacagccag tcacggattt gctgcccgtt gccatatacc ggcagcggtt
    26941 tacccgccag cgcgttgagg atcatcagcg ggatcagttt ttccggaaag tggtaaggac
    27001 cgtagttatt cgagcagttg gtgataagcg tcggcagacc gtaggtccgc agccaggcgc
    27061 gcaccagatg gtcgctgctg gcttttgacg cggaataagg gctgctcggc gcatacggcg
    27121 tggtttcggt gaagaaatca tccgtcgagt gcaggtcacc atatacttcg tcggtggaga
    27181 tatgatgaaa acggaacgct gattttttat cttccgtcag cgtattccag taagcccgcg
    27241 ccgcttcaag caatgtataa gtcccgacaa tgttggtttc aataaacgct gccgggccgt
    27301 caatagaacg gtcaacatgg ctttcggctg ccagatgcat gacacagtct ggctgatgct
    27361 cagtgaatac gcgtgccagt tctgcccgat cgcagatatc aactttctca aaggcaaagc
    27421 gatcgctttg cgcgaccggt gccagcgaca tcaggtttcc ggcgtaggtc agcttatcga
    27481 ccactaccac cgcgtcgctc gtttcgttga tgatataacg caccagcgcc gagccaataa
    27541 acccggcacc acctgttatc agaatttttc tcatcagcgc cagactcctt tggcatcgac
    27601 gacatactgc tgatggacat tgtcgccatt gataacttta aactgactat gatcgaccag
    27661 catcaccagc acgtctgccg ttgccagcgc ctcgtcaagc tgcgccagag tacaaagccc
    27721 ggtcagtttt ttcggcaact ggtggatgtt aggctcaaca accagagttt cgccgctatg
    27781 ccactgggcg atcagttcag cgatttccat cgccgggctt tcgcgcaggt catcaatatt
    27841 cggtttaaac gccagaccaa agcaggcgat tttcagttca ctggcgcgtt tatcggtagc
    27901 cgccaggcaa tcagccaccg ccgctttcac ctgatcgata acccagaacg gtttgtgatc
    27961 gttcacttcg cgcgcggtac ggataagccg cgcctgctgg gggttctgtg ccacgataaa
    28021 ccacggatca acagcaatgc agtgaccgcc cacgccaggg ccaggctgaa gaatattaac
    28081 gcgagggtga cgattcgcca ggcgaatcag ttcccagacg ttaatcccct gatcggcaca
    28141 aatcagcgac aattcattag caaaagcgat attcacatcg cggaagctgt tttcggtgag
    28201 cttacacatt tccgccgtcc gcgagttagt gacgacacac tcaccttcga ggaaaatttt
    28261 gtacagttcg ctggcgcggg tcgaacaaac cggcgtcata ccaccaatca cgcgatcgtt
    28321 tttaatcagc tcgaccataa cctggcccgg taacacgcgt tccgggcagt aagcaatgtt
    28381 gacgtccgcc tgctcgccca cctgctgtgg gaaagtgaga tccggacgca tctctgctaa
    28441 ccattctgcc atcttctcgg ttgaccccac cggcgaggtg gattcaagga tcaccagcgc
    28501 gccttttttc agcactggcg caatggagcg agcagccgat tcaacgtagg tcatatctgg
    28561 ctcatgatcg cctttaaacg gcgtgggtac agcaatcagc caggcatccg cttcaactgg
    28621 cgtcgtgctc gctcgtaaaa aaccgccttc tacggcagtt tttactacgc tcgccaaatc
    28681 aggctcgacg atatggattt cgccacgatt gatggtatca accgcgtgtt ggttgatatc
    28741 gacaccaatc acctgttttt gccgtgaggc aaacgctgct gctgtaggca gcccgatgta
    28801 acccagtccg ataacagaaa tggtcgcaaa actcatagtg atatccgatt attttttaac
    28861 gcttccagaa tgcgagagca tgcctgacca tcaccatacg ggttatgggc gcggctcata
    28921 gtttgatatt cgttttcgtc ttttaaaaga cgcgtcactt cctcgacaat tcgctgctta
    28981 tccgtgccta ccagacgcac cgtacccgcc gtcaccgctt ccggacgctc agtggtatcg
    29041 cgcatcacca gcaccggttt ccccagcgaa ggcgcttctt cctgaatgcc gcctgagtcg
    29101 gtcaaaatca gccaggcgtg gttcatcaac cagacaaacg gtaaatactc ctggggatcg
    29161 atcagaatga catttttcac atgccccaga atgcgattga ccggctctct gacgttcggg
    29221 ttgagatgca ccggatagac aatctggatg tcctggtgcg tggtggcaat gtctgccaac
    29281 gcgtggcaga tttcttcaaa accacgaccg aaactctcac gcctgtgacc ggtcaccaga
    29341 atcatctttt tattggggtc gataaacggg taatttgcca ccagttctga acgcagcgtg
    29401 tcgctgctca tcacctgatc acgcacccat aacagtgcat caatgactgt attaccagta
    29461 atgaagattc ggctatccgc aacgttttca cgcagcaagt tttgccggga agtttcggtt
    29521 ggagagaagt gatacatcgc cagatgcccg gtcaatgtac ggttagcctc ttccggccac
    29581 ggcgaataga gatcgcccgt gcgtaaacca gcctcaacgt gaccaacagg aatacgctga
    29641 taaaacgccg ccaggctggt tgccagcgtc gttgttgtgt cgccgtgaac cagcacgacg
    29701 tctggtttga actcggcaag aataggtttt agcccttcca gaatccgaca ggttatctct
    29761 gtcaggccct gtcctggctg cattatgttg agatcgtagt caggtacaat ggaaaagagt
    29821 ttcagcacct gatcgagcat ctcccgatgc tgcgcagtga cgcaaacttt agcctcaaaa
    29881 aaaggagctt ttgccaacgc atgcaccaac ggagccatct tgatggcttc cgggcgcgta
    29941 ccaaatacag tcagtacttt cacatcgatt ctcttcgaat aagcggcgag cgcctttgcg
    30001 ctcgccgcag cagtgttgct atttcgagca acggcgggtt aatgcgacac cagccccgat
    30061 cagccccccg acaatgcccc acataatcat caggaaggca cgacgtgggc tatcgcgttt
    30121 taccggttct tccggcgtac gcaaatagcg ataggtctga aaacgcggat ccagggttgg
    30181 accaacattc agggtgttta acatggcccg attctgatca tagtcgagat caaaggccgg
    30241 accgacggcc tgtaaatttt ccagtcgagc ctggagcatt ggacgcccaa gcaggaacat
    30301 ttctgaatca ggtaattcct cggcaggcac atctgtcgca ctgcgcgaaa tattatgctg
    30361 ctcagcaatt ttcagcgcct gctcaatgct gttcatccgg cggtcgtaga tggctttcgc
    30421 cacctcttcc tgacgcttca cctgagcttt catctggatg gtgcgtgccg cccatgcgcc
    30481 tttcagctca tcattcagat ggctggctgc acgctggctg gcaaaagcaa catactgacg
    30541 taacaggtta ttagcgtcag gcgcggtttc ggcaataagc ttcacgctgt cattgaccgc
    30601 gcgggtaaag tctccgggga taaactggat gttgttaatc atttcatcca gcaacgccgc
    30661 atcggctttg ctgttgccca ccatccgctg tttgtaatag tcggtttgca gccagaactc
    30721 tctgcgggta tcccacgagg ccagttgcat aacaaactct ttataggctt cgtccatgac
    30781 cgatggttga tcggcagaag ccatgtttga acggacatcc aggttacgca aaaattgctg
    30841 ctgcgagtaa tatcccccca gcatattcac cgttggacga tcggtaatcg ccgtcgagct
    30901 ccactcctga cgagcaaaaa aagtatacgc cagcgcgatt aacgcaaacg ccagccccat
    30961 gccaataatc catagcttcc cagcccacaa ggtacgaaac aacccacgaa tatccagttc
    31021 attttcagcg tcttcggtcg gtttcccagg cattggttgt gtcatcacat cctcatttat
    31081 ttggttaaat tggggctgcc accacgattt ctacgcagtc tgcgttttac gcgcttaata
    31141 aagcgagcaa ctttccaggc acgcttaatg caatatccat agaggaagaa tgctagcaaa
    31201 aagagcacca gcatgaccca ctccgggaca aaatgagaat attctgccag cacgccaatg
    31261 gaagcgagca gtgctgcggc aagggtaatc agcacaaacg cctgacggga agtaaacccg
    31321 gcacgcatga tcaaatggtg aatatgctga cggtcaggag agaatgggct catgccttta
    31381 cgcaggcgac ggtacataat cgccaccata tccattagcg gaatggcgat tatccacaaa
    31441 gcggtaaccg ggctgatggg atgggttttg ccctgggtcg tttcgagcag gatccagata
    31501 acggtaaaac caatcagcgt actgcccgca tcacccataa agactttgta gcggcgaccc
    31561 aggataccaa ggttaagcat gatgtatggc aggatggcgg cgatcatcgc aaagcaccag
    31621 attgcgaggc tggtttgccc gtcgaaccac aaaatcatac cgattgctgc aaacgagacg
    31681 caggacaacc cgcccagcaa gccatcaatg ccatcaacca tgttgaacgc attaatggcc
    31741 gcccagacgg caaatagcgt caggaagtaa ccaaacggtc cgagcgccat ctcccaggag
    31801 ccaaagatat aacccaggct actgagataa agtttgccga acaccatcat aacaatgcca
    31861 acagcggcct gtatggtggc acggattttt acgctgatat caaaacggtc atccagcgcg
    31921 ccaatgaaaa caagcacacc ggcacaagcg agatagagag atgcatgcgg aatatagtaa
    31981 tcgacaattc cgaacgtgaa gcaaatccct gcgtaaaccg aaatcccccc aacgagaggt
    32041 atcaatccct ggtgacgttt gcggaagttt ggtttatcca ctaaaccgac tttttttgcc
    32101 accttacggg caaaaaacag aaacagtgtc gtgaataaaa aaatactgat gagatcagta
    32161 ctcactgtca gtaaattcac aatgcatgct ctcagagaaa attattagca gaagtataac
    32221 cacgaagacc tttattcaga agggaaagtc cgttccgaac ccaccagtcc tgtgcaaaaa
    32281 ttaaccattt gatatgcaaa ttgcataaca tgccagcaaa ttccaggaat tttcctaaca
    32341 tcgccagcgc ggcattaaga ttacagatat aaaagcaaaa cgccacgtaa acacgtggcg
    32401 tttttggcat aagacaaatt tatgagcgtt tcatcatttc gaagaaatcg tcattggtct
    32461 tggtcatggc cagtttatta atgaggaatt ccattgcatc gatttcgccc atcgggtgaa
    32521 tgattttgcg caggatccac attttctgca gttcttcctg agtcgtgagc agctcttctt
    32581 tacgggtacc ggaacggttg tagtcgatag ccgggaagac gcgtttttca gcgatcttac
    32641 gagagaggtg cagttccatg ttgcctgtac ctttaaactc ttcgtaaata acttcgtcca
    32701 ttttagaacc ggtatcgata agcgccgtcg cgataatggt caggctgccg ccctcttcca
    32761 cgttacgcgc cgcaccgaag aagcgtttcg gacgatgaag ggcattggcg tccacaccac
    32821 cggtcaacac tttacctgac gccggaacaa cagtgttgta agcgcgcgcc agacgagtga
    32881 tggagtcgag cagaatgata acgtctttct tgtgctcaac caggcgtttg gccttctcga
    32941 tcaccatttc cgcaacctga acgtggcgag atgcgggttc gtcaaaggta gaagcaacaa
    33001 cttcaccttt taccagacgc tgcatctcgg ttacttcttc cggacgttcg tcgatcagca
    33061 gaaccatcag cacacaatcc gggtggttgt aagcaatgct ctgagcaatg ttctgcagca
    33121 gcatagtttt accggctttc ggcggtgcca caatcagacc acgctgacca cgaccgatag
    33181 gtgatgccag atccagtacg cgagcggtta aatcttccgt agaaccgtta ccacgttcca
    33241 tacgcagacg agagtttgcg tgcagcgggg ttaagttctc aaagaggatt ttgttgcggg
    33301 cgttttcagg tttgtcgaag ttaacttcgt taactttcag cagcgcaaaa tagcgttcac
    33361 cttctttcgg cgggcgaatc ttaccagaga tggtatcacc agtgcggagg ttgaaacggc
    33421 ggatttggct aggggaaacg tagatgtcat caggaccggc gaggtaggag ctgtctgcgg
    33481 aacggaggaa accaaatcca tcctgcaata tctccagtac gccatcacca aagatatctt
    33541 cgccactctt tgcgtgctgc ttcaggatgg caaaaataat gtcctgctta cgcatacgag
    33601 ccaggttttc cagccccata ttttcgccga gagtgatcag ctcagaaacc ggcgtattct
    33661 ttaattcggt aagattcata gtggtgtgag ttcttaaact tggggtaaat ctcgaactta
    33721 atgttgtgaa tggtatggca ggatcatcca tgcctgttta cggtcatcga ctcatgtctt
    33781 ttcgctgcct ggtcacagga gagtacgcag aactgaaacg acaagacgga ttgagtgacg
    33841 agccagaaat ctgttcactt cgcatttaag ataaaacggg aagcgttgga aattacaaga
    33901 ttcaaactta ataaggtatg tttaatacga agtcaacact aagttagcat gactcacgcc
    33961 gggcgtccag tttttagcga cggggcaccc gaacatgaaa ttcccttacg ccaggttagc
    34021 gtcgaggaac tctttcaact gacctttaga cagtgcaccc actttggttg ccgccacttc
    34081 accgtttttg aacagcagca gagtcgggat accacggatg ccatatttcg gcgcagtgcc
    34141 agggttttga tcgatgttca gttttgcaac ggtcagtttg ccctgatatt cgtcagcgat
    34201 ttcatccaga atcggggcga tcattttgca cggaccgcac cactctgccc agaaatcgac
    34261 gaggatcgcc ccgtccgctt tgagtacatc cgtgtcaaaa ctgtcgtcag tcaggtgaat
    34321 aattttatcg ctcatatata actccacagg aataagcctg gcgtgttggt ttcgttgttg
    34381 gtgtaacatt aaccaactaa aggttgactt tatttcaccg gatacgcttt cgtaaagcaa
    34441 tagtaagctg atattctacc acactatgag caaaacacat ttaacagaac agaagttttc
    34501 cgacttcgcc ctgcatccga aggttgtaga agtccttgaa aaaaaagggt ttcataactg
    34561 tacgcccatt caggcactgg cccttccgct gacgctggcg ggtcgtgacg tagccgggca
    34621 ggcgcaaacc ggtaccggga aaacgatggc gtttcttacg tcaacgtttc attatcttct
    34681 ctctcatcct gcgattgccg atcgcaaggt gaatcaacca cgtgccttaa ttatggcacc
    34741 gacgcgtgaa cttgccgtgc agatccatgc cgacgcagaa ccgctggcgg aagctaccgg
    34801 cctgaagctg ggtctggctt acggtggtga tggctacgac aaacagctga aagtgctgga
    34861 aagcggcgtt gacattctga ttggcactac ggggcgttta attgactacg ccaagcagaa
    34921 ccacattaac ctcggtgcca ttcaggtggt ggtactggac gaagccgatc gcatgtacga
    34981 tctgggcttt attaaagata tccgctggct gttccgccgt atgccgcctg caaaccagcg
    35041 cctcaacatg ctgttctccg ccacgctttc gtaccgggta cgtgaactgg cgttcgagca
    35101 gatgaacaat gccgaatata ttgaagtgga accggaacag aaaacgggcc accgtattaa
    35161 agaagagctt ttctaccctt ctaacgaaga aaaaatgcgt ttgctgcaaa cgctgatcga
    35221 agaagagtgg ccagacagag cgattatttt cgccaatacc aaacaccgtt gtgaagagat
    35281 ctggggccac ctggcggcag atggtcatcg tgtcggtttg ttgacaggcg atgtcgcgca
    35341 gaaaaaacgt ctgcgtattc ttgatgaatt tacccgtggc gatctggata ttctggttgc
    35401 caccgacgtt gccgcgcgtg gtttgcatat tccggcagtg acgcacgtct ttaactacga
    35461 tttacccgat gactgtgaag attacgttca ccgtattggt cgtacaggtc gcgcaggcgc
    35521 aagcggtcac tctatcagcc tggcgtgtga agagtatgca ttgaatttgc ctgctattga
    35581 gacctatatt ggtcactcaa ttccggtaag caaatacaat ccggacgcat tgatgaccga
    35641 tctgccaaaa ccgctgcgcc tcacgcgccc acgtacaggc aatggtccgc gtcgtactgg
    35701 cgctccgcgt aatcgtcgtc gttcaggtta aataaaatgt catactcaaa atcattcaaa
    35761 ctgtatcaag atggcaagag aatgaatccc gatgagcata ctgtagtaag tgattcaggt
    35821 gaaagaatgc agccaacaca gagacagatt gaaggatgaa gagtatgggt tccacctcgt
    35881 cgctgtatgc agccattgat ctcggttcga atagttttca tatgctggtt gtgcgcgagg
    35941 tggctggaag catccagacg ctgacgcgaa taaaacgcaa agtgcgtctg gctgctggcc
    36001 tgaatagcga aaatgccctg tctaatgaag caatggagcg cggttggcaa tgtctgcgcc
    36061 tgtttgctga acgtctgcaa gatatccctc cctcgcaaat tcgcgttgtc gctacggcga
    36121 cattacgtct tgccgtcaat gcgggtgatt ttattgccaa agcgcaggaa atcctcggtt
    36181 gtccggtaca ggtgatcagc ggtgaagagg aagcacgtct gatttatcag ggcgttgctc
    36241 acacaactgg cggtgccgat cagcgcctgg tggtggatat aggcggtgcc agtactgaac
    36301 tggtaaccgg cacgggtgca caaaccacct cgttgttcag cctgtcgatg ggctgcgtca
    36361 cctggctgga acgctatttt gccgatcgta atctggggca ggaaaatttt gatgctgcag
    36421 aaaaagcggc acgcgaagtg ttacgtccgg ttgccgatga attacggtat cacggctgga
    36481 aagtgtgcgt tggtgcttcc ggcaccgtgc aggcgttaca ggaaatcatg atggcacagg
    36541 ggatggatga acgcattacc ctggaaaagt tgcagcaatt gaaacagcga gccattcatt
    36601 gcggtcggct ggaggaactg gagattgacg ggctgacgct ggaacgtgcg ttagtgttcc
    36661 cgagtggtct ggcgatcctg atcgccattt ttaccgaact gaatattcag tgtatgaccc
    36721 tggcgggcgg tgcgctgcgt gaaggcctgg tctacggcat gttgcatctg gccgtcgagc
    36781 aggatattcg cagccgtacg ctgcgtaata ttcagcgccg ctttatgatc gatattgatc
    36841 aggcgcagcg cgtagccaaa gttgcggcta acttcttcga tcaggtggaa aaggaatggc
    36901 atcttgaagc aataagccgc gatttgctca tcagcgcctg tcagcttcat gaaatcggcc
    36961 tgagcgttga ctttaaacaa gcgccgcaac acgctgctta tctggtgcgt aatctggatc
    37021 ttcccggttt tacccccgca cagaaaaaat tgctggcgac gctactgctc aaccagacta
    37081 atccggtcga tctctcatcg ctgcatcagc aaaatgccgt accgccgcgc gtcgcagaac
    37141 aactctgccg tttactccgc ctggccatca tttttgccag ccgtcgccgt gacgatctcg
    37201 tgccagagat gacattacag gctaaccatg aactgttgac cttgacgctt ccgcaaggtt
    37261 ggctaaccca acatccgctg ggtaaagaga ttattgctca ggaaagccag tggcagagct
    37321 atgtccactg gccgctggaa gtgcattaat gagtaagtgc cggatgcgat gctgacgcat
    37381 cttttccggc cttgattatt tccctcgttt tgccgccatc atcgctttca gattcgccag
    37441 atggctttgc cctttctgca tccgttcttc ggcgctgacc actttgcgct cctgttccca
    37501 aatcagatca tcctgcggca gctccagcaa aaagcggctc ggctccgggc gcaccagctc
    37561 gccgtactga cggcgttctt tacacagcgt aaaggtcaat tccttctggg cgcgggtaat
    37621 gccgacatag gccagccgcc gctcctcatc gatattatct tcatcgatgc tgctctggtg
    37681 cggcaaaaac ccttcttcca taccgaccat gtagacataa ggaaactcca gcccttttga
    37741 cgcgtgcaga gtcatcagtt gcacctgatc cagctcttct tcactctcac cacgctccat
    37801 catgtcgcgc aaagtaaagc gcgtcaccac ctgggtgagc gtcatcggct catccagttc
    37861 gctgccttcc agcatctccg tcatccagct aaacagttgg ttgacgttct tcatgcgcat
    37921 ttcggcggct ttcgggctgg gcgatgtttc gtacagccag gattcataat ccatgccgtg
    37981 gatcagatcg cgcaccgcgg caatcggctc ccgctccgcc agacgctgga tttctgccaa
    38041 ccagtgagta aagcgggtca atgcttcata accacgtccg ctaagcgtct gactcaggcc
    38101 catatcaaag ctggcggtaa acatgctttt attgcgcgtc atcgcccact cacccagctt
    38161 tttcagcgtc gccgggccaa tctctctctt cggcgtgtta acgatacgca gaaatgcgct
    38221 gtcatcgtcc gggttagtca gcacgcgcag ataagccagc aagtccttga tttcaggacg
    38281 agagaaaaac gacgtaccac cagaaatttt gtacgggatg cggttttgca tcaggaattt
    38341 ttcaaacact cgcgactgat ggttaccgcg ataaagaata gcgtaatatt tgtactgcgt
    38401 tttattgacg aagtgatgcg caatcagttc accagtgacg cgctcggctt catgttcttc
    38461 gttattcgcg cttaaaactt taagctctgt gccgtaaccc agttcggaga acagacgctt
    38521 ctcaaagacg tgcgggttat tggcgatcag gatgttcgcc gctttcaaaa tacgtccgga
    38581 agagcggtag ttctgctcaa gcttaatcac cttcagcgcc ggaaaatcct gactcagcag
    38641 caccaggttt tgtggacgtg cgccgcgcca ggagtagatc gactggtcgt catcgcccac
    38701 cacggtaaag cgcgcgcggc tgcccaccag cagtttcacc agttcatact ggctggtgtt
    38761 ggtgtcctga tactcatcca ccagcagata gcgaattttg ttctgccagc gctcacggac
    38821 ttcttcattg cgttgcagca gcaacgtcgg caataaaatc agatcatcga agtcgagaac
    38881 attgcacgct ttcaggtgtg catcatacag cccataacaa tgggcaaaaa tacggtcccg
    38941 ctcaccaatc gcactggctg ccgcctggga cggtgttttg agatcgttct tccagttaga
    39001 gatggtcgaa atcaactgtt gcaggagaac tttgtcatct tcaatcagcc cttcggtcaa
    39061 ctctttgagc aacgccagct gatcggtatc gtcaaacagc gaaaagttcg ccttcatccc
    39121 cagcgccgca tactcacgct tgatgatatc cagccccagc gtgtggaagg ttgagatcat
    39181 cagcccacgc gcctctttgc gacccagcgt ctgtccgaca cgctctttca tctcgcgcgc
    39241 cgccttattg gtaaaggtca ccgccgcgat atgtcgcgcc tgataaccgc aaccgcggat
    39301 cagatgggcg attttattgg tgatcacacg agttttaccg gaacccgcgc ccgccagcac
    39361 caggcagggg ccggtaacga attcgacagc ttgttgttgg ccggggttta gacgcatagg
    39421 tgtattgctc aatcttcgaa cggggggagg attgtagcag aatcgcattt gaatgtgacc
    39481 gcgtgtaagc cgctaaccgg ttggctgcgg atgtttaaat cagagaggga agaccgaaac
    39541 cggagttcat cgtgaatcca ttagacttag aaaatatcgg gtcgtaacgt tgtgttatta
    39601 ctttttcaga gtttactaag gagaggtgta ctcgtggcga ttaatttcag tcctaaggtt
    39661 ggtgaaatac tggaatgcaa ctttggtaac tatcctgtta gccagaatgg acagttcagc
    39721 accacgtatt acgatggccg cattcctcct gaaatgataa aaaacaggtt a
//
LOCUS       DAJVSY010000016        38853 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.016, whole genome shotgun sequence.
ACCESSION   DAJVSY010000016 DAJVSY010000000
VERSION     DAJVSY010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 38853)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 38853)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..38853
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.016"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..789
                     /locus_tag="OQQ19_000774"
     CDS             <1..789
                     /locus_tag="OQQ19_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708946.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1802495.1"
                     /translation="DSLDIKTTLQANDIPGLTTDQVVSVNTRFTQIKSSTVYSAATQT
                     GVCQGDTSRYGPVNIGANTTFTLYVTKPFLGSMTIPKTDIAVIKGAWVDGMGSPSTGD
                     FHDLVKLSIQGNLTAPQSCKINQGDVIKVNFGFINGQKFTTRNAMPDGFTPVDFDITY
                     DCGDTSKIKNSLQMRIDGTTGVVDQYNLVARRRSSDNVPDVGIRIENLGGGVANIPFQ
                     NGILPVDPSGHGTVNMRAWPVNLVGGELETGKFQGTATITVMVR"
     gene            complement(832..1692)
                     /gene="rsmI"
                     /locus_tag="OQQ19_000775"
     CDS             complement(832..1692)
                     /gene="rsmI"
                     /locus_tag="OQQ19_000775"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HCS1802496.1"
                     /translation="MKQHQSADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAE
                     DTRHTGLLLQHFGINARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPG
                     YHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIE
                     AEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVK
                     EDENRRKGEMVLIVEGHKAQEEDLPADALRTLALLQAELPLKKAAALVAEIHGVKKNA
                     LYKYALEQQG"
     gene            1756..3783
                     /gene="lpoA"
                     /locus_tag="OQQ19_000776"
     CDS             1756..3783
                     /gene="lpoA"
                     /locus_tag="OQQ19_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoA"
                     /protein_id="HCS1802497.1"
                     /translation="MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQ
                     ADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDSQRREKT
                     LLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIA
                     QEPLLGAKEKKQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDP
                     DMMKAGIADWQKRYPNNPGAKMLPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTI
                     QQGFEAAKNIGTQPVAAQVAAADVAEQPQPQTADGVASPAQASVSDLTGDQPAAQPVP
                     VSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGARIVVGPLLKNNVEEL
                     LKSNTPLNVLVLNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSS
                     LGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGTPITPRATTDSG
                     MTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGAMLYAS
                     SRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDA
                     WSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS"
     gene            3741..4136
                     /locus_tag="OQQ19_000777"
     CDS             3741..4136
                     /locus_tag="OQQ19_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HCS1802498.1"
                     /translation="MATVPTRSGSPRQLTTKQTGDAWEVQARRWLEGKGLRFVAANVN
                     ERGGEIDLIMREGWTTVFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGS
                     FDTVDCRFDVVAFTGNEVEWIKDAFNDHS"
     gene            4156..4746
                     /gene="diaA"
                     /locus_tag="OQQ19_000778"
     CDS             4156..4746
                     /gene="diaA"
                     /locus_tag="OQQ19_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA initiator-associating protein DiaA"
                     /protein_id="HCS1802499.1"
                     /translation="MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKI
                     LCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQ
                     VRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVE
                     IRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD"
     gene            4756..5331
                     /gene="yraP"
                     /locus_tag="OQQ19_000779"
     CDS             4756..5331
                     /gene="yraP"
                     /locus_tag="OQQ19_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divisome-associated lipoprotein YraP"
                     /protein_id="HCS1802500.1"
                     /translation="MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQ
                     VDDGTLEVRVNSALSKDEQIKKETRINVTAYQGKVLLVGQSPNAELSARAKQIAMGVD
                     GANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMG
                     LVTEREAKAAADIASRVSGVKRVTTAFTFIK"
     gene            complement(5445..6485)
                     /locus_tag="OQQ19_000780"
     CDS             complement(5445..6485)
                     /locus_tag="OQQ19_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCS1802501.1"
                     /translation="MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWQHYYGKAFTA
                     AETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLR
                     TLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPAT
                     LVFMGFVLGWGFAAICLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEARSGFFS
                     RWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGAVDNSLMWVVAMAVAGCLFVI
                     PTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAV
                     SGVIVGGLALLF"
     gene            complement(6558..7193)
                     /locus_tag="OQQ19_000781"
     CDS             complement(6558..7193)
                     /locus_tag="OQQ19_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HCS1802502.1"
                     /translation="MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGV
                     FNPHDPQLSDALAQVTEPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLG
                     AQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNE
                     TLFAPLFRLLPGNWKSIDARDVARVMLAEAMRPEHEGVTILSSSELRKRAE"
     gene            7321..7839
                     /gene="yhbO"
                     /locus_tag="OQQ19_000782"
     CDS             7321..7839
                     /gene="yhbO"
                     /locus_tag="OQQ19_000782"
                     /EC_number="3.5.1.124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417622.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein/nucleic acid deglycase"
                     /protein_id="HCS1802503.1"
                     /translation="MSKKIAVLISDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVK
                     GKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFA
                     ICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLP
                     AFNREALRLLGA"
     gene            complement(7819..8262)
                     /locus_tag="OQQ19_000783"
     CDS             complement(7819..8262)
                     /locus_tag="OQQ19_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhbP family protein"
                     /protein_id="HCS1802504.1"
                     /translation="METLITISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFY
                     ILTEEKTRHAQMSGPQAAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARKAYN
                     HRFPVARMLSAPVWEIRLDEIKFTDNTLGFGKKMIWLRDSGTEQA"
     gene            8313..8615
                     /gene="yhbQ"
                     /locus_tag="OQQ19_000784"
     CDS             8313..8615
                     /gene="yhbQ"
                     /locus_tag="OQQ19_000784"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708956.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage response exodeoxyribonuclease YhbQ"
                     /protein_id="HCS1802505.1"
                     /translation="MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKG
                     ELTLAFSAPVGDRSLALRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD"
     gene            complement(8602..9105)
                     /locus_tag="OQQ19_000785"
     CDS             complement(8602..9105)
                     /locus_tag="OQQ19_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS1802506.1"
                     /translation="MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGL
                     VATDDEGQVIGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNE
                     FGYAAVVTLGDPALYSRFGFELAAHHDLRCRWPGTESAFQVHRLADDALNGVTGLVEY
                     HEHFNRF"
     gene            complement(9099..9623)
                     /locus_tag="OQQ19_000786"
     CDS             complement(9099..9623)
                     /locus_tag="OQQ19_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 domain-containing protein"
                     /protein_id="HCS1802507.1"
                     /translation="MLDKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQA
                     LDDGELEFLEGRWLSIHVRDIDLQWFTSVVNGKLVVSQNAQADVSFSADVSDLLMIAA
                     RKQDPDTLFFQRRLVIEGDTELGLHVKNLMDAIELEQMPKALRMMLLQLADFVEAGMK
                     TAPETKQTSVGEPC"
     gene            9832..10812
                     /locus_tag="OQQ19_000787"
     CDS             9832..10812
                     /locus_tag="OQQ19_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017457364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HCS1802508.1"
                     /translation="MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTE
                     KKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEY
                     AAERYPNIERHVSVQASATNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPL
                     EVFAFGSLCIMSEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLID
                     RYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQR
                     SPAYVSQVAKVWRQAIDRCKADPQSAWMETLGSMSEGTQTTLGAYHRKWQ"
     gene            10821..11699
                     /locus_tag="OQQ19_000788"
     CDS             10821..11699
                     /locus_tag="OQQ19_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312067.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HCS1802509.1"
                     /translation="MKYSLGPVLWYWPKETLEDFYQQAATSSADVIYLGEAVCSKRRA
                     TKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNM
                     CAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRN
                     QFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLN
                     GIQTMSGYVYNLGNELTSMQGLVDVVRLSPQGTDTFAMLDAFRANENGAAPLLLTANS
                     DCNGYWRRLAGLELQA"
     gene            11905..12912
                     /locus_tag="OQQ19_000789"
     CDS             11905..12912
                     /locus_tag="OQQ19_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="luciferase-like monooxygenase"
                     /protein_id="HCS1802510.1"
                     /translation="MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRY
                     WLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLY
                     PGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPG
                     YGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKP
                     YAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGV
                     QQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELL
                     G"
     gene            complement(13030..14274)
                     /gene="mtr"
                     /locus_tag="OQQ19_000790"
     CDS             complement(13030..14274)
                     /gene="mtr"
                     /locus_tag="OQQ19_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan permease"
                     /protein_id="HCS1802511.1"
                     /translation="MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWS
                     MAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYIL
                     TYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAK
                     VITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYY
                     GKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGV
                     LNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRLKTALLTFAPPV
                     VGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKRFGSPKFRVWGGKPMITLIL
                     VFGVGNALVHILSSFNLLPVYQ"
     gene            complement(14428..16317)
                     /gene="deaD"
                     /locus_tag="OQQ19_000791"
     CDS             complement(14428..16317)
                     /gene="deaD"
                     /locus_tag="OQQ19_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417631.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase DeaD"
                     /protein_id="HCS1802512.1"
                     /translation="MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR
                     DVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR
                     GVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE
                     MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP
                     DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALN
                     GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIG
                     RTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQ
                     QQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKR
                     EFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAI
                     ANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPH
                     TGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRR
                     FGGDA"
     gene            complement(16310..16390)
                     /gene="yrbN"
                     /locus_tag="OQQ19_000792"
     CDS             complement(16310..16390)
                     /gene="yrbN"
                     /locus_tag="OQQ19_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YrbN"
                     /protein_id="HCS1802513.1"
                     /translation="MKIADQFHDELCRLAAINFEAHVLHG"
     gene            complement(16497..17381)
                     /gene="nlpI"
                     /locus_tag="OQQ19_000793"
     CDS             complement(16497..17381)
                     /gene="nlpI"
                     /locus_tag="OQQ19_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020802045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpI"
                     /protein_id="HCS1802514.1"
                     /translation="MKPFLRWCFVATALTLAGCSNTSWRKSEVLAVPLQPTLQQEVIL
                     ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL
                     GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD
                     PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER
                     LKADATDNTSLAEHLSETNFYLGKYYLSLGDSDSATALFKLAVANNVHNFVEHRYALL
                     ELSLLGQDQDDLAESDQQ"
     gene            complement(17490..19625)
                     /gene="pnp"
                     /locus_tag="OQQ19_000794"
     CDS             complement(17490..19625)
                     /gene="pnp"
                     /locus_tag="OQQ19_000794"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312072.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HCS1802515.1"
                     /translation="MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTV
                     VGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPL
                     FPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ
                     YVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQN
                     INELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSE
                     TIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVL
                     PRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGM
                     VGSPKRREIGHGRLAKRSVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLAL
                     MDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSREGISALQMD
                     IKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIK
                     DVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRV
                     YTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ
                     GRIRLSIKEATEQSQPAAAPEAPAAEQGE"
     gene            complement(19873..20142)
                     /gene="rpsO"
                     /locus_tag="OQQ19_000795"
     CDS             complement(19873..20142)
                     /gene="rpsO"
                     /locus_tag="OQQ19_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HCS1802516.1"
                     /translation="MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFA
                     EHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIERLGLRR"
     gene            complement(20291..21235)
                     /gene="truB"
                     /locus_tag="OQQ19_000796"
     CDS             complement(20291..21235)
                     /gene="truB"
                     /locus_tag="OQQ19_000796"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HCS1802517.1"
                     /translation="MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHT
                     GALDPLATGMLPICFGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT
                     FSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITIYELLF
                     IRHEGNELELEIHCSKGTYIRTIIDDLGKKLGCGAHVIYLRRLAVSKYPVERMVTLEH
                     LRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP
                     LEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEYPA"
     gene            complement(21235..21636)
                     /gene="rbfA"
                     /locus_tag="OQQ19_000797"
     CDS             complement(21235..21636)
                     /gene="rbfA"
                     /locus_tag="OQQ19_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001712908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HCS1802518.1"
                     /translation="MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMS
                     RDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNS
                     LVEGMRMSNLVTSVVKHDEERRVNPDDSKED"
     gene            complement(21800..24448)
                     /gene="infB"
                     /locus_tag="OQQ19_000798"
     CDS             complement(21800..24448)
                     /gene="infB"
                     /locus_tag="OQQ19_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HCS1802519.1"
                     /translation="MTDVTIKTLAAERQTSVERLVQQFADAGIRKSADDSVSAQEKQT
                     LIDHLNQKNSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERL
                     AAEEQARREAEESAKREAQQKAEREAAEQAKREAAEQAKREAAEKDKVSNQQDDMTKN
                     AQAEKARREQEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTDNAEPTEDSS
                     DYHVTTSQHARQAEDESDREVEGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRG
                     GKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAM
                     ATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHV
                     DHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARG
                     AQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQ
                     YGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFL
                     DKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLS
                     GVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVN
                     IVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNV
                     RADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKS
                     PKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIG
                     VKNYNDVRTGDVIEVFEIIEIQRTIA"
     gene            complement(24473..25960)
                     /gene="nusA"
                     /locus_tag="OQQ19_000799"
     CDS             complement(24473..25960)
                     /gene="nusA"
                     /locus_tag="OQQ19_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005131833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HCS1802520.1"
                     /translation="MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEID
                     VRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTF
                     DRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLELGNNAEA
                     VILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGE
                     EVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLW
                     DDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGW
                     ELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKEL
                     LEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGIDRDLAFKLAA
                     RGVCTLEDLAEQGIDDLADIEGVTDEKAGALIMAARNICWFGDEA"
     gene            complement(25988..26440)
                     /gene="rimP"
                     /locus_tag="OQQ19_000800"
     CDS             complement(25988..26440)
                     /gene="rimP"
                     /locus_tag="OQQ19_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004125659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HCS1802521.1"
                     /translation="MSTLEQKLTEMITAPVEALGFELVGIEFIRGHTSTLRIYIDSED
                     GINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLV
                     LRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF"
     gene            complement(26647..26723)
                     /locus_tag="OQQ19_000801"
     tRNA            complement(26647..26723)
                     /locus_tag="OQQ19_000801"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(26687..26689),aa:Met,seq:cat)
     gene            27071..28414
                     /gene="argG"
                     /locus_tag="OQQ19_000802"
     CDS             27071..28414
                     /gene="argG"
                     /locus_tag="OQQ19_000802"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HCS1802522.1"
                     /translation="MTTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTAN
                     LGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNT
                     TPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDT
                     DFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVN
                     PIMGVKFWDESVKIPAEEVTVRFEQGHPVALNGKTFSNDVEMMLEANRIGGRHGLGMS
                     DQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQG
                     RWFDSQALMLRDSLQRWVASQITGEVTLELRRGNDYSILNTVSENLTYKPERLTMEKG
                     DSVFSPDDRIGQLTMRNLDITDTREKLFGYAKTGLLSSSATSGVPQVENMENKGQ"
     gene            complement(28422..30047)
                     /locus_tag="OQQ19_000803"
     CDS             complement(28422..30047)
                     /locus_tag="OQQ19_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HCS1802523.1"
                     /translation="MTVFNKFARSFKSHWLLYLCVIVFGITNLVASSGAHMVQRLLFF
                     VLTILVVKRISSLPLRLLVAAPFVLLTAADMSISLYSWCTFGTTFNDGFAISVLQSDP
                     DEVVKMLGMYIPYLCAFAFLSLLFWAVIIKYDVSLPTKKVTGILLLIVISGSLFSACQ
                     FAYKDAKNKKTFSPYILASRFATYTPFFNLNYFALAAKEHQRLLSIANTVPYFQLSVR
                     DTGIDTYVLIVGESVRVDNMSLYGYTRSTTPQVEAQRKQIKLFNQAISSAPYTALSVP
                     LSLTADSVLSHDIHNYPDNIINMANQAGFQTFWLSSQSAFRQNGTAVTSIAMRAMETV
                     YVRGFDELLLPHLSQALQQNTQQKKLIVLHLNGSHEPACSAYPQSSAVFQPQDDQDAC
                     YDNSIHYTDSLLGQVFELLKDRRASVMYFADHGLERDPTKKNVYFHGGREASQQAYHV
                     PMFIWYSPVLGDGVDRTTENNIFSTAYNNYLINAWMGVTKPEQPQTLEEVIAHYKGDS
                     RVVDANHDVFDYVMFRKEFTEDKQGNPPPEGQG"
     gene            complement(30506..30592)
                     /locus_tag="OQQ19_000804"
     tRNA            complement(30506..30592)
                     /locus_tag="OQQ19_000804"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(30556..30558),aa:Leu,seq:gag)
     gene            complement(30607..30939)
                     /gene="secG"
                     /locus_tag="OQQ19_000805"
     CDS             complement(30607..30939)
                     /gene="secG"
                     /locus_tag="OQQ19_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HCS1802524.1"
                     /translation="MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFG
                     SSGSGNFMTRMTALLATLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPA
                     KPTSDIPN"
     gene            complement(31167..32504)
                     /gene="glmM"
                     /locus_tag="OQQ19_000806"
     CDS             complement(31167..32504)
                     /gene="glmM"
                     /locus_tag="OQQ19_000806"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HCS1802525.1"
                     /translation="MSNRKYFGTDGIRGRVGDAPITPDFVLKLGWAAGKVLARHGSRK
                     IIISKDTRISGYMLESALEAGLAAAGLSALFTGPMPTPAVAYLTRTFRAEAGIVISAS
                     HNPFYDNGIKFFSIDGTKLPDAVEEAIEAEMEKEISCVDSAELGKASRIVDAAGRYIE
                     FCKATFPNELSLSELKIVVDCANGATYHIAPNVLRELGANVIAIGCEPNGVNINAEVG
                     ATDVRALQARVLAEKADLGIAFDGDGDRVIMVDHEGNKVDGDQIMYIIAREGLRQGQL
                     RGGAVGTLMSNMGLELALKQLGIPFARAKVGDRYVLEKMQEKGWRIGAENSGHVILLD
                     KTTTGDGIVAGLQVLAAMARNHMSLHDLCSGMKMFPQILVNVRYTAGSGDPLEHESVK
                     AVTAEVEAALGNRGRVLLRKSGTEPLIRVMVEGEDEAQVTEFAHRIADAVKAV"
     gene            complement(32497..33345)
                     /gene="folP"
                     /locus_tag="OQQ19_000807"
     CDS             complement(32497..33345)
                     /gene="folP"
                     /locus_tag="OQQ19_000807"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312083.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HCS1802526.1"
                     /translation="MKLFAQGTSLDLSHPHVMGILNVTPDSFSDGGTHNSLIDAVKHA
                     NLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWLSVDTSKPEV
                     IRESAKVGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAE
                     VNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGM
                     SRKSMIGQLLNVGPSERLSGSLACAVIAAMQGAHIIRVHDVKETVEAMRVVEATLSAK
                     ENKRYE"
     gene            complement(33435..35369)
                     /gene="ftsH"
                     /locus_tag="OQQ19_000808"
     CDS             complement(33435..35369)
                     /gene="ftsH"
                     /locus_tag="OQQ19_000808"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014833437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HCS1802527.1"
                     /translation="MAKNLILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNND
                     QVREARINGREINVTKKDSNRYTTYIPVQDPKLLDNLLTKNVKVVGEPPEEPSLLASI
                     FISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEA
                     KEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG
                     SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN
                     QMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVH
                     MRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMIEFEKAKDKI
                     MMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLP
                     EGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWG
                     FSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTD
                     NMDILHAMKDALMKYETIDAPQIDDLMARRDVRPPAGWEEPGASNNSGDNGSPKAPRP
                     VDEPRTPNPGNTMSEQLGDK"
     gene            complement(35469..36098)
                     /gene="rlmE"
                     /locus_tag="OQQ19_000809"
     CDS             complement(35469..36098)
                     /gene="rlmE"
                     /locus_tag="OQQ19_000809"
                     /EC_number="2.1.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase
                     RlmE"
                     /protein_id="HCS1802528.1"
                     /translation="MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQ
                     SDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD
                     ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGS
                     FVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP"
     gene            36224..36517
                     /gene="yhbY"
                     /locus_tag="OQQ19_000810"
     CDS             36224..36517
                     /gene="yhbY"
                     /locus_tag="OQQ19_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014833438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HCS1802529.1"
                     /translation="MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHH
                     ELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPTKERKISLPR"
     gene            complement(36674..37150)
                     /gene="greA"
                     /locus_tag="OQQ19_000811"
     CDS             complement(36674..37150)
                     /gene="greA"
                     /locus_tag="OQQ19_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006178768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HCS1802530.1"
                     /translation="MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKE
                     NAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEE
                     QTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL"
     gene            37398..38831
                     /gene="dacB"
                     /locus_tag="OQQ19_000812"
     CDS             37398..38831
                     /gene="dacB"
                     /locus_tag="OQQ19_000812"
                     /EC_number="3.4.16.4"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001212660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HCS1802531.1"
                     /translation="MRFSRFIIGLTSCIAFSVQAANVDEYVTQLPAGANLALMVQKVG
                     ASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLV
                     ARFGADPTLKRQDIRNMIATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCF
                     SAPPAAAIVDRNCFSVSLYSAPKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCE
                     LDVIPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLR
                     QTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSD
                     AVRQILRQQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPL
                     AGYDGSLQYRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAV
                     EPADQRNRRIPLVRFESRLYKDIYQNN"
BASE COUNT         9439 a        10577 c         9575 g         9262 t
ORIGIN      
        1 gacagcctgg atattaaaac cacattacag gcaaacgaca ttccaggact cacaaccgac
       61 caggttgtct ctgttaacac ccgattcaca cagataaaaa gcagcaccgt atattctgct
      121 gcaacccaaa cgggtgtttg ccagggtgac acgtctcgtt atggacccgt taatattggt
      181 gcaaatacca cctttaccct gtatgtcacc aagccatttc tcggctcgat gaccattccg
      241 aaaacggata ttgccgtcat taaaggcgcg tgggtcgatg gaatgggaag cccgtctaca
      301 ggtgacttcc atgatttagt caagttatcg attcagggaa atctcaccgc cccacagtcg
      361 tgcaaaatta atcagggcga tgttattaag gttaattttg gattcatcaa tggtcagaag
      421 tttaccaccc gcaatgccat gccagacggt tttactccag tagactttga tatcacttat
      481 gactgtggtg atacttcaaa gattaaaaac tcgttgcaaa tgcgcatcga cggtacaact
      541 ggggtagtag accagtacaa cctggtcgcc aggcgaagaa gttcagacaa tgtgcccgat
      601 gtcggtattc gtattgaaaa tctcggcggc ggagttgcaa atattccttt tcagaacggt
      661 atccttcccg ttgatccttc cgggcatggc accgtcaata tgcgcgcctg gccagttaat
      721 ctggtcggtg gtgagctgga aacaggaaaa tttcagggca cagccaccat taccgtcatg
      781 gtgcggtaaa agaagacgtt gcgttttgat taacgcaacg cttcggcact gttacccctg
      841 ctgctccagc gcatacttat acagcgcatt tttcttcacg ccatgaattt ctgcgaccag
      901 cgccgccgct tttttcagcg gcagttctgc ctgtagcagc gccagcgtgc gcagggcatc
      961 ggcgggtaag tcttcttcct gtgctttatg accttcgaca atcagcacca tttcgccttt
     1021 gcgacggttt tcatcttcct ttacccacgc cagcagttcg ccaacgggcg cgccgtgaat
     1081 ggtttcccag gttttggtca gctcacgcgc cagaaccacg tagcgggatt cgcctaatac
     1141 cgcaacgata tcttccaggc tatctaacag acggtgggtg gattcataaa aaatcagcgt
     1201 gcgcggctcc gcttcaatgg cttttagcgc atcacggcgg ccttttgatt tggcaggtaa
     1261 aaagccttcg taacagaaac ggtcagaggg taaacccgcg gcgcttaacg cagtgatagc
     1321 agcacacggc ccgggtagcg gcaccacgcg aatccccgct tcacggcagg tacgcaccag
     1381 atggtagcca ggatcgttaa ttagcggcgt tccggcatcg gaaaccagcg caatgttttg
     1441 cccctcttgc agcttcgcca gcagcgtttc ggctttttgt tgttcgttat ggtcgtgcag
     1501 cgcaaacaac cgggcattaa tcccaaaatg ttgcagcaat aaaccggtgt gacgagtatc
     1561 ctcggcggca atcagatcaa cggcctgtaa tacctctaac gcacgctggg tgatatccgc
     1621 cagattgccg attggcgtcg gtacaatgta aagctggccc tgagaattat ccgccgattg
     1681 gtgttgtttc attgtgtcgt ccgtattgcc gatttaatat tgagcattgc gtaaaaaaat
     1741 atcactggat acattatggt accctcaaca ttttctcgtt tgaaagccgc gcgttgtctg
     1801 cctgttgttc tggcagccct gattttcgcc ggttgtggca cccatactcc cgatcagtcc
     1861 actgcttata tgcagggcac ggcgcaggct gattctgcct tttatcttca gcagatgcag
     1921 caaagctctg atgataccag gatcaactgg caattactcg ccattcgtgc actggtgaaa
     1981 gaaggtaaaa ccgggcaggc ggttgagttg tttaaccaac taccgcaaga actgaacgat
     2041 tctcagcgtc gcgagaaaac actgctggcg gtagagatta aactggcgca gaaagatttt
     2101 gctggcgcgc aaaacttgct ggcgaaaatc acacctgccg atttagaaca aaaccagcaa
     2161 gcgcgttact ggcaggcaaa aatcgatgcc agccaggggc gtccttccat tgatttactg
     2221 cgcgcgttaa ttgctcagga accgctgctc ggcgcgaaag aaaaaaagca gaatattgat
     2281 gccacctggc aggcgctctc ctccatgact caggaacagg cgaatacgct ggtgatcaac
     2341 gccgacgaaa atattctgca aggctggctg gatctgcagc gcgtctggtt tgataaccgt
     2401 aacgatcccg atatgatgaa agccgggatc gccgactggc agaaacgtta tccgaacaat
     2461 ccgggcgcga aaatgctgcc aacgcagttg gttaacgtaa aagcgtttaa accagcctcg
     2521 accaacaaaa tcgccctgct gttgccgctg aatggccagg cagcggtatt tggtcgcact
     2581 attcagcaag gctttgaagc ggcgaaaaat atcggcactc agccagtggc ggctcaggta
     2641 gctgccgcag acgtagcaga acaacctcag ccgcaaactg cggatggcgt tgccagcccg
     2701 gcacaagcct cggttagcga tctgaccggt gatcagcctg cggcccagcc ggtgcctgta
     2761 agcgccccgg cgacaagcac cgcagcggta agcgcacccg caaatccatc cgcagagctg
     2821 aaaatctacg atacctcatc acaaccactt agccagatct taagccaggt tcagcaggat
     2881 ggcgcgagaa ttgtggttgg tccgttgctg aaaaataacg ttgaagagtt gcttaagagc
     2941 aacaccccgc tgaacgtgct ggtactgaac cagccggaga atatcgaaaa ccgcgtcaat
     3001 atttgttact tcgcgctttc accggaagac gaagcgcgcg atgcagcgcg tcatattcgt
     3061 gaccagggta aacaagcgcc gctggtgctg atcccacgca gttcattggg cgatcgcgta
     3121 gccaatgcgt ttgcgcagga gtggcagaaa ctgggcggcg gcaccgttct gcaacaaaaa
     3181 tttggttcca ccagcgaatt acgcgcgggt gttaacggcg gttctggtat cgctttaacg
     3241 ggtaccccga ttactcccag agcgacaacc gactccggca tgacgaccaa caatccaacg
     3301 ctgcaaacca cgccaaccga tgaccagttc accaataatg gcggtcgtgt cgatgcggtg
     3361 tacattgtgg caacgccggg tgaaatcgct tttatcaaac cgatgatcgc catgcgtaac
     3421 ggtagccaga gcggtgcaat gctgtacgcc agctcccgca gcgcacaagg caccgcaggc
     3481 ccggatttcc gtctggagat ggaaggtttg cagtacagcg aaatcccgat gctggcgggc
     3541 ggtaatctgc cgttaatgca gcaggcactc agcgcggtga ataacgatta ttcactggct
     3601 cgcatgtatg cgatgggcgt cgatgcctgg tcgctggcaa atcatttctc acaaatgcgc
     3661 caggttcagg gttttgaaat caacggtaat accggaagcc tgacggcaaa cccggattgc
     3721 gtgattaaca ggaagttatc atggctacag taccaacaag gtcaggtagt ccccgccagt
     3781 taaccaccaa acagaccggc gatgcgtggg aagtacaagc gcgtcgctgg ctggaaggca
     3841 aaggactgcg atttgtcgcc gctaacgtga acgagcgtgg cggtgagatc gatctgataa
     3901 tgcgtgaagg ctggaccacc gtttttgtcg aggtgcgtta ccgccgctct gcgctttatg
     3961 gcggcgcggc agccagtgtg acccgcagca aacaacacaa attattacag actgcccgct
     4021 tgtggctcgc gcgtcataat gggagttttg atactgtgga ttgccggttc gatgtggtag
     4081 ccttcaccgg gaatgaggtt gagtggatta aggatgcctt taatgaccac tcataattaa
     4141 ggtttaagga ttagcgtgca agaaagaatt aaagcttgct tcactgaaag cattcaaact
     4201 caaattgcgg cggcagaggc gcttccggat gccatctccc gtgcagccat gacgctggtt
     4261 cagtctctgc tcaatggcaa caaaatcctc tgttgtggta atggaacttc cgctgccaat
     4321 gcacagcatt ttgctgccag catgatcaac cgtttcgaaa cggagcggcc cagcttacct
     4381 gccattgcac taaatactga taatgttgtc ttaacggcga ttgccaacga tcgcttacat
     4441 gatgaagtgt atgcaaaaca ggtgcgggcg ctgggtcatg cgggagatgt attgttagcc
     4501 atttccaccc gtggcaacag ccgcgatatt gttaaagcag ttgaagccgc cgttacgcgt
     4561 gatatgacca ttgtggcatt gaccggctat gacggcggcg aacttgcagg tttgttaggg
     4621 ccacaggatg tggagatccg cattccttcg catcgtagtg ctcgcattca ggaaatgcat
     4681 atgctgacgg taaattgcct gtgcgatctg atcgataaca cgcttttccc tcaccaggat
     4741 gattaaggag aatacatgaa ggcattatcg ccaatcgcag tccttatttc cgcgctgctg
     4801 ttgcaaggtt gtgttgccgc tgccgtagtg ggtaccgctg ctgtgggtac caaagccgca
     4861 actgacccac gcagtgtcgg tacccaggtg gacgatggta ccctggaagt gcgcgtgaac
     4921 agcgcattgt cgaaagacga acagattaag aaagaaaccc gtattaatgt cacggcgtat
     4981 cagggcaaag tgctgctggt tgggcagtca ccaaatgctg aactttcggc tcgcgccaaa
     5041 cagattgcta tgggcgtaga cggtgccaac gaagtgtata acgagattcg tcagggccag
     5101 ccgattggtc tgggcgaagc atctaacgat acgtggatca ccaccaaagt gcgttcgcag
     5161 ctcttaacca gcgacctggt gaaatcgtcc aacgtgaaag tgaccaccga aaacggtgaa
     5221 gtgttcctga tggggctggt gactgaacgt gaagcgaaag cggcggcaga tattgccagc
     5281 cgggtgagcg gcgtaaagcg ggtaaccaca gcgtttacgt ttattaaata gcagcccctt
     5341 gtaatgcctg atgcgacgct tgccgcgtct tatcaggcct acaacgatgc aaaccgtagg
     5401 tcggataagg cgtttacgcc gcatccgaca tgttttccct caaatcagaa caacagcgcc
     5461 agcccgccga caatcacacc agacactgcc accatcgccc ctgtcagcca taaggctttc
     5521 gccgggaacg ctttgcgcag cataatcagt gacggcaaac tcactgccgg gagcgtcatc
     5581 aacaatgcca gcgccggagc ggttcccata cctgccagca tcatcgtttg tacaatcgga
     5641 atttctgctg ccgtgggaat gacaaacaag catcctgcta ccgccatcgc caccacccac
     5701 atcaggctgt tatcgacagc accatcggca tgggggaata accagacgcg tgcggcaccc
     5761 aacaccagta ctgcaaggat gtaaaccggg atcgtactcc agaaaagtgt ccatagcgcc
     5821 ctgccccagc ggctaaaaaa accgctccgt gcttccggta tgtcaatttc gaccggtgcc
     5881 tgcgtttgcg gtgtttcacg cacccatttt tgcaccagcg tcgcaatcag caacaccatc
     5941 accagcccgg ccaccagaca aatcgccgca aaaccccagc cgaggacaaa ccccataaac
     6001 accagcgtcg ccgggtttaa caccggattg cccatccaga atgccagcgc accgcccatc
     6061 gatacctgtt ggcgacgcat ccccgccgcg accggagccg cacagcaggt acacatcatg
     6121 cccggcagcg aaaacagcgt tcccagcagc gtgccgcgaa agcgcgattg cccaagcgta
     6181 cgcaacaacc agtcacgcgg gatcagcacc tgaatcaacg aaccgaggat cacccccagc
     6241 accgccgctt tccatactgc gaggaaatag atcatcgcgt aatccaacgc cgcttgccac
     6301 ggattagcat ccgcctgcgc aaggatagat ttaccgatac tgtgggtttc ggctgcagta
     6361 aacgctttgc cgtagtaatg ttgccatttc acataccaga gaccggcaat gacaacgaga
     6421 aagaaaagcg cgggtttcca ccactgaatg ggtgttgccg cctgagatga agactgacca
     6481 gtcatagcat tccctaggaa taagttatga taattgagcg cgtgaatatt acgctcacta
     6541 tcaattcttg ggaataatta ttcagctctt ttgcgtaatt ctgaagagct taaaatcgtc
     6601 acgccttcat gctcaggccg catcgcctct gccagcatga cccgcgccac gtctctcgca
     6661 tcaatggatt tccagttacc tggtaacaaa cggaacagcg gcgcaaaaag cgtttcgttc
     6721 atccgctgtt tgctacgatc gcccagtaac atcgacgggc gagcaatggt caatttcggc
     6781 cagttctggg caattaatgc ttcttccatc tcccctttga cgcggttata gaaaaacggc
     6841 gagtgggcat tggcccccat agcactgacc accagcatat gctgcgcgcc cagccgccgc
     6901 ccggttaatg cggtatccac taccagcgtg taatcggcat gaataaacgc ctctttgctc
     6961 cccgcttctc gccgcgtggt gccgagacaa caaaacacaa tgtcgatggg ttcggtgacc
     7021 tgcgccaacg cgtcactcag ttgcggatca tggggattaa acaccccggg catatcgccc
     7081 aacggacgtc gcgtcggcgc agcaatggcg ttaactttcg gttcattaat caacatccgc
     7141 agcaggtgac cgcccaccag ccccgttgcg cctgtaatca gtacctgact catcttcgct
     7201 cctttacaga attgtctgcc ttgcgctcca cggctcatgc accagtctta atagaccatg
     7261 aggtaattat ccccgattgt gggaaattcg cctcatccaa tgcaacaacg cggaggaagc
     7321 atgagtaaga aaattgccgt tttaatcagt gatgaatttg aggattcaga atttacttca
     7381 cccgcagacg agttccgtaa agccggacac gaagtaatta ccattgaaaa gcaagcgggt
     7441 aaaacggtga aaggcaaaaa aggagaagcc agcgtgacca tcgataaatc catcgatgaa
     7501 gtgacgccag cggagtttga tgccctgctg ctaccgggcg gccattcacc ggattatctg
     7561 cgtggggaca accgttttgt cacctttacc cgtgattttg tgaatagcgg caaacctgtt
     7621 ttcgccatct gtcacggtcc gcagctgctg atcagcgccg atgtgattcg ggggcgcaaa
     7681 ctgaccgcag ttaaaccgat cattattgat gttaaaaatg cgggcgcgga attttacgat
     7741 caggaagtcg tggttgataa agatcagctg gttaccagcc ggacaccgga cgatctgcca
     7801 gcgtttaacc gcgaggcgtt acgcctgctc ggtgcctgag tcgcgtagcc aaatcatttt
     7861 tttaccaaag cccagcgtgt tgtcggtgaa tttgatttca tcgagccgga tttcccacac
     7921 cggggccgac agcattctgg caaccggaaa gcgatgattg tacgccttgc gcgcgaggtc
     7981 gctttcctca ccttccagcc tgcggatctc acctttaaac tgcacaccgc gaattaacgc
     8041 taccgttttc ggctgaccgt ttaccgttcc ggcaaccgca gcctgcggcc cactcatctg
     8101 cgcgtggcgc gttttttctt ccgtcaaaat gtagaaggcg actttctgcg catcaaacag
     8161 ataaaaagca ttagcgcacc acagttcccc ttcctgctgc acacaccagg tgacaacatg
     8221 ttgttttgcc aaccaacggc tgatggtgat gagtgtttcc attgctgttc tcttttatac
     8281 tgtgggcctg accttaacat gcgacgcaga cgatgacacc ctggtttctt tacttgatcc
     8341 gtaccgccga caataagctt tataccggga tcaccacgga tgtcgaacgc cgctatcagc
     8401 agcaccaaag cggcaaaggg gcgaaagcac tgcgcgggaa aggagaactg acgctggcgt
     8461 tttctgcgcc agtgggcgac cgttcgctgg cactacgggc ggaatatcgc gttaagcaac
     8521 tgaccaaacg gcaaaaagag cgtctggtag cggaaggcgc agggtttgca gaactgttga
     8581 gcagcctgca aaccccggag attaaaagcg attgaaatgc tcgtgatact caaccagacc
     8641 ggttacgcca ttcagcgcgt catccgctaa acgatgtacc tggaaggcgc tttcagtgcc
     8701 cggccagcgg caacgcagat cgtgatgcgc cgccagttca aagccgaaac gactgtacag
     8761 cgccggatcg cccagcgtca ccactgcggc atagccgaac tcattaagcg aatcgagtcc
     8821 ttcatagacc agttggcgtg ccagcccctg tccacggtat ttttcatcaa ccgccaacgg
     8881 tgccatgccg acccattgca ggtcttcgcc ctgcacatca accggactaa atgccacata
     8941 gccaatgacc tgaccttcgt catctgtcgc caccagcccc agcgtcagaa agccatcttc
     9001 acgcagatcg tgaaccagct tcgcttccgc atcactttcg aatgagcgac gcagcagggc
     9061 atcaataccc ggcgcatcaa tgggaatttc tactcgaatt agcatggttc acctaccgat
     9121 gtctgtttgg tttcaggcgc ggttttcatt cccgcctcaa caaaatccgc cagttgcagc
     9181 agcatcatgc gtaaggcttt cggcatttgc tccagttcaa tggcgtccat caggtttttc
     9241 acatgcagcc ccagctccgt atcgccttca atcaccagcc gacgctggaa gaagagcgta
     9301 tctggatctt gtttacgcgc cgcaatcatc agcagatcgc tgacgtcggc actaaaactc
     9361 acatcagctt gcgcgttctg gctgaccacc agtttgccat tcaccaccga ggtaaaccat
     9421 tgcaggtcaa tatcacgcac atgaatactt aaccagcggc cttcaagaaa ctccagctcg
     9481 ccatcatcca gcgcctgacg gaattgccag cttaagacct gctcaagaac ctggcgtttt
     9541 agcgcaaatg gcgtcagttt taccggtaca ctcaacagag atggccccaa atgcacaata
     9601 cgggaacgaa gtttatccaa cacgagtttt actccctgtt tcaacaatca tcctattttg
     9661 ccatatcaga aaaataacat agcggtataa atcaacaatt ccatatgaaa ttgctgctac
     9721 caccaataca actttaactg ccttaaatca aaaattgtcg cagcaaggtt aactaaaatc
     9781 ccagttcgtt aacatttttg cgttttgata gcgcaacctt caggaaaaat tatggagctg
     9841 ctctgccctg ccggaaatct cccggcgctt aaggcggcca tcgaaaacgg cgcagatgct
     9901 gtttatatcg ggctaaaaga tgataccaat gcccgtcact tcgccggcct taactttacc
     9961 gagaaaaaat tgcaggaagc ggtgagtttt gtccatcaac atcgccgcaa acttcacatc
    10021 gcgattaaca cttttgcgca tccggacggt tacgcccgtt ggcagcgcgc cgtggatatg
    10081 gcggcgcagc tgggtgccga cgcgctgatc ctcgccgacc tcgccatgct ggaatacgcc
    10141 gccgagcgtt atccgaatat tgagcgccac gtatcggtgc aggcttcggc gaccaatgaa
    10201 gaggcgatta acttttatca tcgccatttt gacgttgccc gcgtggtgct gccgcgcgtg
    10261 ttgtcgattc atcaggtgaa acagctggca cgggtcacac ctgtaccact ggaagtgttt
    10321 gctttcggca gcctgtgcat tatgtcggaa ggccgttgct atctgtcgtc gtatctgacg
    10381 ggtgagtcgc ctaacaccgt gggcgcgtgt tctccggccc gtttcgtgcg ctggcaacaa
    10441 acgccgcagg ggctggaatc ccgcctgaac gaagtgctga tcgaccgtta tcaggacggc
    10501 gaaaacgcag gttatccgac gctgtgtaaa gggcgttatc tggtggacgg cgagcgctat
    10561 cacgcgctgg aagaaccaac cagtctcaat accctggaac tgctgccgga gttaatggcg
    10621 gcgaatattg cttcggtgaa aattgaaggc cgccagcgta gcccggcgta tgtcagccag
    10681 gtggcgaaag tctggcgtca ggctatcgac cgttgtaagg ccgatccgca aagcgcgtgg
    10741 atggagacgc tcgggtcgat gtccgaaggc acgcagacca cccttggcgc gtatcaccgt
    10801 aaatggcagt gagaagagca atgaaatatt ccttagggcc agtgctgtgg tactggccaa
    10861 aagagacgct ggaagatttt tatcagcagg ccgccaccag cagcgccgac gtgatttatc
    10921 ttggtgaagc ggtatgcagc aagcgccggg caaccaaagt tggcgactgg ctggagatgg
    10981 caaaatcgct cgccggaagt ggcaagcaga ttgtgctctc cacgctggcg ctggtgcagg
    11041 catcctctga actgggcgaa ctgaaacgct atgttgagaa cggtgagttt ctgattgaag
    11101 ccagcgatct cggcgtggtg aatatgtgcg ctgaacgcaa actgccgttc gtcgccgggc
    11161 acgcgctgaa ctgctacaac gcggtgacgc tgaaaatatt gctcaaacag ggcatgatgc
    11221 gctggtgtat gccggtggag ctttcccgcg actggctggt gaatctgctt aatcagtgcg
    11281 atgagctggg cattcgcaac cagtttgaag tggaagtcct gagctacggt catctaccgc
    11341 tggcctactc cgctcgctgc tttaccgcgc gttcggaaga ccgcccgaaa gatgagtgtg
    11401 aaacctgctg cattaagtat ccgaacgggc gcaacgtgct gtcgcaggaa aaccaacaag
    11461 tgtttgtact caatggcatt cagaccatga gcggctacgt ttacaacctc ggtaacgagc
    11521 tgacatccat gcagggattg gttgatgtgg tccgcctgtc accgcagggt actgacactt
    11581 tcgcgatgct cgacgccttc cgcgctaatg aaaatggcgc tgcgccacta ttgttgacgg
    11641 caaacagcga ctgtaacggc tactggcggc ggctggcagg actggagctg caagcctaag
    11701 taaatatgct cgtcatactt caagttgcat gtgctgcatc tgcattcgtt caccccagtc
    11761 acttacttat gtaagctcct ggggattcac tctcttgtcg ccttcctgca actcgaatta
    11821 tttagagcac agctcacttt gttaacaact ttaactactc tttaatgcag tattaaagat
    11881 taatcggtaa caaagtgagc tgttatgact gataaaacca ttgcgttttc gttactcgat
    11941 ctggccccca ttcccgaagg ttcttcagcg cgagaagcat tctcccactc tctcgatctc
    12001 gcccgtctgg ctgaaaagcg cggctatcat cgctactggc tggcagaaca ccacaatatg
    12061 actggcattg ccagtgctgc cacgtcggta ttgattggct atctggcggc gaataccacc
    12121 acgctgcatc tggggtctgg cggcgtgatg ttgcctaacc actcaccgtt ggtcattgcc
    12181 gaacagttcg gcacgctcaa tacactctat ccggggcgaa tcgatttggg gctgggtcgt
    12241 gcgccaggta gtgaccaacg gacaatgatg gcgctgcgtc gccatatgag cggcgatatt
    12301 gataatttcc cccgcgatgt cgcggagctg gtggactggt ttgacgcccg cgatcccaat
    12361 ccgcatgtgc gcccggtacc aggctatggc gagaaaatcc ccgtgtggtt gttaggctcc
    12421 agcctttaca gcgcgcaact ggcggcgcag cttggtctgc cgttcgcgtt tgcctcacac
    12481 ttcgcgccgg atatgttgtt ccaggcgctg catctttatc gcagcaactt caaaccgtcg
    12541 gcacgactgg aaaaaccata cgcgatggtg tgcatcaata ttatcgccgc cgacagcaac
    12601 cgcgatgccg aattcctgtt tacctcaatg cagcaagcct ttgtgaagct gcgccgcggc
    12661 gaaaccgggc aactgccgcc accgattcaa aatatggatc agttctggtc gccgtccgaa
    12721 cagtatggtg tgcagcaggc gctgagtatg tcgttggtag gtgataaagc gaaagtgcgt
    12781 catggcttgc agtcgatcct gcgcgaaacc gacgccgatg agattatggt caacgggcag
    12841 attttcgacc accaggcgcg gctgcattcg tttgagctgg cgatggatgt taaggaagag
    12901 ttgttgggat agtgtgtctt aacgcgggaa gccttatccg agctggcaac gctgtcctac
    12961 gtagacctga taagcgaagc gcatcaggca ttgtgtaggc agcagaaatg tcggataagg
    13021 caccgctgat tactgataca ccggcagtaa attaaagctc gataaaatat gtaccaatgc
    13081 gttgccgacg ccaaacacca gaatcagcgt aatcatcggc ttgccgcccc agacgcggaa
    13141 tttcgggctg ccaaagcgtt tacgcgatgc gcgggccagc agtgccggaa caattgccgc
    13201 ccagatggta gccgctaaac cagcataacc aatggcgtac aggaatccat tcgggaacag
    13261 cagaccaccc acaacaggcg gtgcaaaggt caacaatgct gttttcaagc ggcccatagc
    13321 cgagtcatcg aaaccaaaca gatctgccag atagtcaaac aaacccagcg ttacgccaag
    13381 gaacgaactc gctaccgcaa agtttgagaa cacgaccagc agaaggtcca ggctacggct
    13441 gttcagcacg ccgcttaatg cctgtaccag cacatcaata ttaccgccct tctctgcaat
    13501 accgataaac tccggacgcg ggatgttacc catcgtcgcc agcaaccaga tggtatacag
    13561 cgccagtgcc atcagcgtac cgtacaccag gcatttcacg atggttttcg gatctttgcc
    13621 gtaatacttc atcaggcttg gcacgttacc gtgataacca aacgacgcca ggcagaacgg
    13681 caatgtcatc agcagatacg gcgcataaga tgcattgctt tctgcaacgt tgaacaatgt
    13741 cgcaggctgc acatgcccca acaggctgcc aaaggtgagg aagaaggtaa tgactttcgc
    13801 ccccagcaca atcgccgtca tgcggctgac ggccttagta ctcaaccaca ccacaaacgc
    13861 taccagcagt gcaaaaccaa aacccgccgc ccgtgccggg acgtttagcg acatctctgc
    13921 gaaggtgtga tgcagaattg aaccactggc agaaatatag gcataggtca ggatatagag
    13981 cacaaaggca atggaaatac cgttgaccac gttccagcct ttgcccagca aatctttggt
    14041 gatggtgtca aaactcgaac cgattcggta attcaggtta gcttccagaa tcatcaagcc
    14101 ggaatgcagc atacagaacc aggtaaagat cagcgccgcc attgaccaga aaaaccacgc
    14161 cccggacatg accactggca gagaaaacat ccctgcgcca ataatggtgc cgccgataat
    14221 caccacgccg ccaagcagcg acggtgacgt ttgggtggtg gttagtgttg ccatgagggc
    14281 ttctctccag tgaaaaatag tgcgactgcg ttgttatgca ttgcactgta ccagtacgcg
    14341 agtacaaaag acagaaaaaa agccccgatg gtaaaaatcg gggctgtata tattatttta
    14401 cagattgtgt tcgctgttca gcgatgatta cgcatcacca ccgaaacgac gacgaccggt
    14461 agagtcatca cgacgcggag cgcggccttc acgacgttcg ccgctaaaac gacgaccatc
    14521 accacggcca ccttcacggc gttcaccgct gaagttacga ccgccttcac gacgttcgcc
    14581 accgaaacca cgaccaccgc cacgacgctc accgccagta tgcggctgtg catcgcccag
    14641 taactgcatg ttcatcggct tgttgagaat gcgagtgcgc gtaaagtgtt gcagcacttc
    14701 acccggcata cctttcggca gttcgatggt ggagtgagaa gcaaacagct tgatgttacc
    14761 aatgtaacgg ctgctgatgt cgccttcgtt agcaatcgca ccaacgatat gacgaacttc
    14821 aacaccatca tcacggccca cttcaatgcg gtacagctgc atatcgccaa catcacgacg
    14881 ttcacgacgc ggacgatctt cacggtcacc acgcgggcca cggtcgttac gatcgcgcgg
    14941 accacggtca tcacggtcac ggaattcacg tttcggacgc atcggcgcat ctggcggtac
    15001 gatcagagta cgttcaccct gtgccatttt cagcagtgcc gcagccagag tttcgagatc
    15061 cagctcttca ccttctgcag tcggctgaat tttgctcagc agtgcgcggt attgatccag
    15121 atcgctgctt tccagctgct gctgtacttt agcggcgaat ttttccagac ggcgtttgcc
    15181 cagcagttct gcgttcggca gttctacttc cggaatagtc agcttcatag tacgttcaat
    15241 gttgcgcagc agacgacgct cgcggttctc aacgaacagc agcgcgcggc cagcacgacc
    15301 cgcacgaccg gtacgaccga tacggtgaac gtaagactca gaatccatcg ggatatcgta
    15361 gttaactacc aggctgatac gctcaacgtc caggccacgg gctgcaacgt cggtcgcaat
    15421 caggatgtcc agacgaccat ctttcaggcg ttccagtgtc tgttcacgca gcgcctggtt
    15481 catgtcaccg ttcagcgcgg cgctgttgta gccgttacgc tcaagagctt cagccacttc
    15541 cagagtcgcg tttttggtac gaacgaagat aatcgccgca tcaaaatctt ccgcttccag
    15601 gaaacgtacc agtgcttcgt ttttgcgcat accccagaca gtccagtagc tctggctgat
    15661 gtcaggacgg gtagtcacgc tggactgaat gcgcacttcc tgcggctctt tcataaagcg
    15721 gcgggtaatg cgacgaatcg cttccggcat ggttgcagag aacagagcgg tctgatgacc
    15781 ttccgggatc tgcgccataa tggtttcaac gtcttcgatg aagcccatgc gcagcatttc
    15841 gtcagcttca tccagaacca gaccgctcag tttagagagg tccagagtgc cacgtttcag
    15901 gtggtccagc agacggcccg gagtaccgac aacgatctgc ggcccctgac gcagggcgcg
    15961 taattgcacg tcataacgct ggccgccgta cagagcaacc acatttacgc cgcgcatgtg
    16021 tttagagaaa tccgtcattg cttcagcaac ctgtaccgcc agttcgcggg tcggtgccag
    16081 caccagaatc tgtggtgctt tcagctcagg atcaagattc tgcaacagag gtaaagagaa
    16141 tgctgcagtt tttccgctcc ccgtctgggc catacccaga acgtcgcggc cattcagcag
    16201 atgtggaata cactctgcct gaattggaga tggtttttcg taacccagat cgttaagggc
    16261 ttcaaggata ggagccttca ggcccagatc tgcaaaagtg gtttcgaatt cagccatgta
    16321 gtacgtgtgc ctcaaaatta atggcggcca gtctacataa ctcatcatga aattgatcag
    16381 caattttcat tgaaaagtgt gaaccggctc aaagtaggtg tattaacgaa caacaacgcc
    16441 ctcacccctt aaggtgatgg caatcaaaaa agattacggg ctgatgtgta cgtcagctat
    16501 tgctggtccg attctgccag gtcatcttgg tcctggccca ggagcgataa ttccaacaat
    16561 gcgtatcggt gctcaacaaa gttatgaacg ttgttggcaa ccgccagttt gaacagtgcc
    16621 gtggcgctgt ccgaatcccc cagacttagg tagtacttac ctaaatagaa gttggtttca
    16681 ctgagatgct cagcgagcga ggtgttatcc gttgcgtccg ccttgagcct ttccattaac
    16741 gtttgttcgc taatgttgcc caggtagaac tcgacaatgt tccatcccca ctgttcctta
    16801 tccgattttt cgaagtgctg tttcaacact tctttagcct gcttctcatc gagcttctgc
    16861 tcggcgagat aaagccacag actacggaaa ggatcattgg gatcgtcttg ataaaacgcc
    16921 agcagatcat cttgcgctaa cttgtcacga ccgccgtaat ataatgcgat cccgcgattc
    16981 aagtgcgcgt agttgtaagt tggatcaagc tcaagtacag aatcaaacgc ttcataggca
    17041 gcatcaaaat tgcctgcctg cgttaaatat atgcctaagt aattgaacac ttcaggcata
    17101 tccggtcgga ttgccagcgc ttgcgaaaaa tcgttacgcg ctaatgccct cagaccgaga
    17161 ctatcataca acactccgcg ctcatataaa agctgtgcgc gttcgtcatc ggttaaagcc
    17221 cgactggcaa ggatttgttc catacgtgcc agaatcactt cctgctgtaa agtcggttgc
    17281 aatggtaccg cgaggacttc acttttacgc caggaagtat tactgcatcc tgcaagcgta
    17341 agtgctgtcg caacgaaaca ccagcgcaaa aaaggcttca tttcccactc ccgaagacca
    17401 cggttgaatg aacgtcctgt tcccggttgc taacaaggcg tcctgcccgg ttaaaagccc
    17461 cccgccgcag cggagggcaa atggcaacct tactcgccct gttcagcagc cggagcttcc
    17521 ggtgctgcag caggttgaga ctgctcagtc gcttctttaa tgctcagacg gatacggccc
    17581 tggcgatcaa cttccagaac tttcaccggt acttcctgac ccatctgcag gtaatcggtc
    17641 actttctcaa cgcgtttgtc agcgatttga gagatgtgga ccagaccttc tttaccgccg
    17701 ccgatggcaa caaatgcgcc aaagtcaacg atacgggtca ctttaccagt gtagacgcgg
    17761 cccacttcga tttctgcagt gatctcttcg atacgacgaa tagcatgttt cgctttctcg
    17821 ccgtcggtcg ctgcgatctt cacagtaccg tcatcttcga tttcgatggt agtgccagtt
    17881 tcttcggtca gggcacggat aacagagccg cctttaccga taacgtcttt gatcttgtcc
    17941 gggttgatct tgatggtatg gatacgcggt gcgaactcag agatatcgcc acgcggcgcg
    18001 ttgatcgcct gttccattac gcccaggata tgcagacgcg cacctttagc ctggttcagc
    18061 gcaacctgca tgatctcttt ggtgatacct tcaattttga tatccatctg caatgcagag
    18121 ataccctcgc gggaacccgc aactttgaag tccatatcgc ccaggtgatc ttcgtcgccc
    18181 aaaatgtcag acagtacaac gtagttgtcg ccttctttca ccagacccat tgcgataccc
    18241 gcaacggcag ctttgatcgg cacacctgcg tccatcagcg ccagagacgc gccgcacacg
    18301 gaagccatag aagaggaacc gttggattca gtgatttcag acacaacacg tacggtgtac
    18361 gggaatttgt ccatatccgg catgactgcc agcacgctgc gcttcgccag acgaccgtga
    18421 ccaatttcac gacgcttcgg agaaccgacc atgccggttt cgcctacgga gtacggaggg
    18481 aagttgtagt ggaacaggaa ggtatcggta cgttcgccca tcagttcatc aagaacctgc
    18541 gcgtcacgag cagtacccag cgttgcggta accagcgcct gcgtttcacc acgggtgaac
    18601 agcgcagaac cgtgagtacg cggcagcacg ccagtacgca catccagacc acggatcata
    18661 tctttttcac gaccgtcgat acgcggttcg cctgccagta cgcggctacg aacaacgttt
    18721 ttctcgatag cgtgcagaat ttcacccagt tcgttttcgt ccagggtttc gtcttcagca
    18781 agcagcgtcg cgatggtttc agatttgatg acatcaacct gcgcataacg ctcttgtttg
    18841 tcggtgatgc ggtaagcatc gctcaggcga gcttcagcca gtgcagcaac gcgcgcgttc
    18901 agcgcttcgt ttaccggctc cggctgccag tcccaacgtg gtttaccggc ttctttcacc
    18961 agttcattga tgttctgaat aacaacctgc tgttgttcat gaccgaacac tactgcgccc
    19021 agcatctggt cttcgctcag cagttcagct tcagattcaa ccatcagaac agcggcttca
    19081 gtaccggcaa caaccagatc cagtttgctc tctttcagct cgtcctgagt cgggttcagt
    19141 acgtactggt cattgatgta acctacgcga gcagcaccaa tcggaccatt gaacggaata
    19201 ccagacagag acagtgctgc ggaagcacca atcatcgcga cgatatccgg gttaacttgc
    19261 gggttaacag aaaccacggt ggcgataacc tgaacttcgt tgacgaagcc ttccgggaac
    19321 agcgggcgaa tcgggcggtc aatcagacgc gcgatcaggg tttcgccttc gcttggacga
    19381 ccttcacgac ggaagaagct acccgggata cgaccagcag cgtaggtacg ctcctgatag
    19441 ttaacggtca gtgggaagaa gtcctgacct ggtttggctt ttttctggcc aacaacggta
    19501 acaaataccg cggtgtcatc catgctaacc ataacagcgg cagtagcctg acgagccatc
    19561 atgccggttt ccagagtcac ggtgtgttgg ccgtactgga atttacgaac gatcggatta
    19621 agcaatgtaa tatcctttct ctttcttaga cagtacctta cggcactggt gttaataccc
    19681 gatcttctgc gcatcctcgc gactaatgac aaccctaacc cagctctatg tgggtaaagc
    19741 ctctcattag ccgcgcgaac ctctgcaacg gaagatcatt catagcaaca atacattagt
    19801 ttccagtgaa ttgctgccgt cagcttgaaa aaaggggcca ctcaggcccc cttttctgaa
    19861 actcggcagg aattagcgac gcagacccag gcgctcgatg agctgggtgt aacgtgctac
    19921 gtctttacgt ttcaggtagt cgagcagttt acgacgctga gaaaccatgc gcagcagacc
    19981 acgacggctg tggtgatctt ttttgtgctc tgcaaagtgg ccctgcaggt ggttgatctg
    20041 tgcagtcagc agtgctacct gaacttcggt agaaccggtg tcgtttgcgt cacgaccaaa
    20101 ctcagaaacg attttagctg ttgcttcagt acttagagac attttaaaac tccaaagtat
    20161 atagaatgaa aggacgccga tctctaattc agcgatccca gtgtacgtta cgcaaagtgt
    20221 taaacaattt acgcgacgtt aagcggcagt attctactcg tagcgacttg ttatcgcaag
    20281 acggttaaca ttacgccggg tattcaacca ccaggcgacg aggcgcgacg cggccttcat
    20341 cgtcaatttc gcccataccg ataaacttgc cgttctcacc ttctgtaacg cgaaccagtc
    20401 cttccagcgg cgcaccggat gtacgaactg ggttaccatt tttgaagtaa acagaagacg
    20461 ttaacggaag attcaccacc gggtagtccg aagctggact gtccattggc atcagtaatg
    20521 gatcaagtaa ctccgcagcc ggaatatcct gctgttcggc ttgttcgacc agttcacgca
    20581 gatgttccag ggtcaccatc cgttcaaccg gatatttact taccgccaga cgacgcaggt
    20641 aaataacatg cgcgccacaa ccgagttttt tacccaggtc atcaatgatg gtgcggatat
    20701 aagtgccttt tgagcagtga atttccagct ccagctcatt gccttcgtgg cgaataaaca
    20761 gcaattcata aatggtaatc gggcgcgctt cacgcggtac ttcaatgccc tgacgcgcat
    20821 attcgtacag ttttttaccc tgatatttca gtgctgaata catcgaaggg atctgttcga
    20881 tatcgccacg gaaagtatcc agcgccgccg ccagttgctc tgcgctaaag gttaccggac
    20941 gttcttcaac gatttgtccg tcggcatcag aagtatcggt acgctgtcca agacgcgcaa
    21001 tgacccgata gcgtttgtcg gagtccagca gatactggga aaacttcgtc gcttccccga
    21061 agcaaattgg caacatgcca gttgccagcg ggtccagcgc accggtatgc ccggcacggt
    21121 tggcgttata aatccgtttc actttttgca gcgcatcatt gctggacata ccctgcggtt
    21181 tatccagcaa caaaacgccg ttaatgtcgc gaccgcgacg acgaggacga ctcattagtc
    21241 ctccttgctg tcgtccgggt taacacgacg ttcttcgtca tgtttgacca cgctggtcac
    21301 caggtttgac atgcgcatcc cttcaaccag agagttgtcg tagaagaagg tcagttccgg
    21361 cacgatacgc aggcgcatcg ctttccccag caggctgcgg atgaaaccag aagcttcttg
    21421 caacgctttg atgcccgctt taaccgcgtc ttcatctttg tcgttgagga acgtcacata
    21481 tactttggca tacgccaggt cgcgagacat ttcgacaccg gaaacggtgg tcatcatgcc
    21541 caggcgagga tctttaattt cacgctgcag gatgagagcg atctcttttt gcatttcctg
    21601 cgctacgcgc tgcgggcgac caaattcttt cgccataata aattctcctg acaaaaaagg
    21661 gactgttagc ccctttttaa aattaatttc aggtggaagg gctgttcacg ttggcctgat
    21721 aagacgcgcc agcgtcacat caggcaatcc atgccggatg cggcgtaaac gccttatccc
    21781 gcatggaacc ctaaaaacct taagcgatgg tacgttggat ctcgatgatt tcgaatactt
    21841 cgatcacatc gccagtgcgg acgtcgttgt agttcttaac gccgatacca cattccatac
    21901 cgttacggac ttcgttaacg tcatctttga agcggcgcag ggactccagc tcgccttcgt
    21961 agataaccac gttgtcacgc agaacgcgga tcgggttgtg acgtttaacc acaccttcgg
    22021 taaccataca gcctgcgatg gcaccaaatt tcggcgattt gaacacgtca cgaacttccg
    22081 ccagaccgat aatctgctgt ttcagttccg gagacagcat accgctcatc gccgctttca
    22141 cttcgtcaat caggttatag atgacggagt agtaacgcag atctaggctt tccgcttcaa
    22201 tcactttacg tgcagaggca tcagcacgta cgttgaagcc aaccaggatg gcgttggacg
    22261 ccgcagccag ggtggcgtcg gtttcggtga taccacctac gccagaaccg atgatcttca
    22321 ctttaacttc gtcagtagac agtttcagca aggagtcgga gatcgcttcc acagaaccct
    22381 gtacgtctgc cttcaggacg atgttcactt cgtgaacttc gccttcggtc atgttggcga
    22441 acatgttctc gagtttagat ttctgctgac gcgccagttt aacttcgcgg aatttaccct
    22501 gacgatacag tgcaacttca cgcgctttct tctcgtcacg tacaacggta acttcatcac
    22561 ccgcagccgg tacgccggac aggccgagga tttccaccgg aatggacgga cccgcttcca
    22621 gcacttcctg acccagttcg ttacgcatcg cacgaacacg accgtattcg aagccacaca
    22681 gaacgatatc gcccttgtgc agagtacctt cacgtaccag aacggtagca accggaccac
    22741 gacctttatc gaggaaggat tcgataaccg caccgctcgc cataccttta cgtaccgctt
    22801 tcagctccag aacttccgcc tgcagcagga tagcgtccag cagttcatcg atgccggtac
    22861 ccgctttcgc agatacgtgt acgaactggc tttcaccgcc ccactcttct ggcaggatgc
    22921 catactggga gagttcgttc ttaacacgat ccggatcggc ttctggttta tcaatcttgt
    22981 tcactgcaac caccaccggt acctgcgccg ctttcgcgtg ctggattgct tcgatggtct
    23041 gcggcatcac gccgtcgtcg gcagcaacaa ccaggactac gatgtccgtt gcctgcgcac
    23101 cacgagcacg cattgaagta aacgcggcgt gccctggggt gtccaggaag gtgatcatgc
    23161 cgttttcagt ttcaacgtgg tatgcaccaa tgtgctgggt aatgccgccc gcttcgccag
    23221 aggccacttt cgttgaacga atgtagtcca gcagagaggt tttaccgtgg tcaacgtgac
    23281 ccatgatggt cacaaccggc gcgcgcggtt cagccgcagc ccccgtgtca cggtcgctca
    23341 ttaccgcctc ttccagctcg ttttcacgac gcaggataac tttgtggccc atctcttcag
    23401 caaccagctg tgcggtttcc tgatcgataa cctggttgat ggttgccatt gcgcccagtt
    23461 tcatcatcgc tttgatgacc tgagagcctt taaccgccat cttgttcgcc agttcgccaa
    23521 cggtgatggt ttcgccgatc acaacgtcac ggttaacggc ctgagctggc ttctggaagc
    23581 cttgctgcag ggaagaacct ttacgttttc cgcctttacc tccacgtact gctgcgcgag
    23641 cttcttcacg atcagctttt gattcagcgt gtttgttgcc tttcttcgga cgcgctgctt
    23701 tcgcgttacg accacggcca cggccgcctt cgacttcacg atcgctttcg tcttctgcct
    23761 ggcgagcatg ttgagaagta gtgacgtgat aatcgctgga atcttcagtc ggttccgcgt
    23821 tatcagtcca tttgttttct tccgccatac gacgtgcttc ttcagcaacg cgacgtgctt
    23881 cttcttcgag tttacgacgc gcttcttctt cagctttacg cttgagctct gcagcttcct
    23941 gctcacggcg ggctttttca gcctgggcgt ttttagtcat atcgtcttgt tgattgctca
    24001 ctttgtcttt ttccgcagct tcacgtttcg cttgttcagc agcttcacgc ttagcttgtt
    24061 ctgcggcctc acgttcagct ttttgttgcg cctcgcgttt agccgattct tctgcctcac
    24121 gacgggcttg ctcttccgct gcaaggcgtt cagcctcttg cggatcgcgt ttcacaaagg
    24181 tgcgtttctt gcggacttcg atttgtaccg atttgctttt tccaccggta ccaggaatgt
    24241 taagggtgct gcgtgtttta cgttgcagcg tcaatttgtc cgggcctgaa tttttctgat
    24301 tcaggtggtc aatcaaagtc tgtttctctt gtgcggacac agagtcgtca gcagacttcc
    24361 ggatacctgc atcagcaaat tgctgtacca ggcgttccac ggaggtctgt cgctctgcgg
    24421 ccagcgtttt aatcgttaca tctgtcatgc tgttccttcc tgctacagtt tattacgctt
    24481 cgtcaccgaa ccagcaaata ttacgggcag ccataatcag tgctccggct ttttcgtcgg
    24541 tcaccccttc gatatcagcc agatcatcaa tgccctgttc ggcgagatct tccagcgtac
    24601 aaacgccacg ggcggccagt ttgaatgcca aatcacgatc tatcccttca aggttcagca
    24661 gatcgtcagc cggtttgtta tcaccgaggc tttcttcctg ggcctgtgca atggtggcca
    24721 gtgcattttt agcacgctcg cgcagtgctt caacggtcgg ctcatcaagg ccttcgattt
    24781 ccaacagctc tttcatcggc acataggcca gttcttccag cgtcgagaag ccttcttcta
    24841 ccagaacagt cgcgaagtct tcgtcgatgt cgagatattt ggtgaaggtg tcgatcgctg
    24901 cgtgcgcttc cgcctgatgc ttagcctgca ggtcgtcaac ggtcatcacg ttgagttccc
    24961 aaccgctcag ctgcgaagcc agacgcacgt tctgaccgtt acggccaatc gcctgcgcca
    25021 ggttaccggc ttcaacggcg atatccatgg tgtgtttatc ttcatccacc acgatagaag
    25081 caacgtctgc cggtgccatt gcgttaatca caaactgcgc cgggttatca tcccacagga
    25141 cgatatcgat acgctcgccg cccagttcag tagaaaccgc ctgaacacgc gcgccacgca
    25201 tacctacaca ggcacctacc ggatcgatac gtttatcgtt ggttttcacc gcgattttcg
    25261 cacgagaacc cggatcgcga gccgctgctt taatttcaat cacttcttcg ccgatttctg
    25321 gcacttcaat acggaacagt tcgatcagca tttccggctt ggaacgagtg acgaacagtt
    25381 gcgcgccacg cgcttccggg cgaacggaat agagcacgcc acgaacgcgg tcgccagggc
    25441 ggaagttttc acgcggcagc atatcttcgc gcaggatcac ggcttcagca ttgttgccca
    25501 gctccagaga gatgttgtcg cggtttactt ttttcaccac gccggtgatg atttcacctt
    25561 cgtgttcacg gaactgatca accaccatcg cacgttcggc ttcacgcact ttctgcacga
    25621 taacctgttt tgccgtctgg gtagtgatac ggtcaaaggt aacagactca atctgatctt
    25681 caacgtaatc gcccaggttc aggctttcat cttcataacg tgcggcttca agggtgattt
    25741 ccttggtcgg ctgggtgact tcatcaacaa ctaaccagcg acggaaggtg tcaaaatcac
    25801 cgcttttgcg atcgatctgt acgcggacgt cgatctcttg ttcatatttt ttctttgttg
    25861 ctgtcgccag cgcgctttcc aatgcttcga aaatcttctc gcgaggtagc gccttttcat
    25921 tggatacggc ttcaactaca gccaaaattt ctttgttcat cgcgggcttt tcacctcatc
    25981 cagactatta aaagtgggga accaggttcg ccttctggat attactcagc gcgaacactt
    26041 catctttacc ttcgacggta actgtgatca tttcaccgtc taccgctttg ataacgccct
    26101 gccatttacg acggttttgt accgccatac ggagaaccag agtcacctct tctccgacaa
    26161 aacgggcgta gtgttcagcc gtgaacagtg ggcgatcgag acccggtgag gagacttcca
    26221 ggttataagc aacggtgatg ggatcttcaa catccagcac agcacttacc tggtggctca
    26281 catcagcaca atcatcaaca ttgatgccat cttcactatc aatatagatg cgcagtgtgg
    26341 atgtgtgacc gcgaataaat tcgatgccaa ccagttcaaa acccagggcc tcaactggcg
    26401 cagtaatcat ctctgttaat ttttgctcta atgtggacaa gcccaccccc aagacataaa
    26461 aaaagggcct aaagcccagt tattctgtag tcagataaca aaaaaccccg ataaatcggg
    26521 gctttatata actgaaccct ataatcgcaa ctgcggtctg gagcactttc cagaaggatt
    26581 ttttcaaatc ccactacgaa ggccgaagtc ttcacagtat atttgaaaaa ggactctaag
    26641 ggaaagtggt tgcgggggcc ggatttgaac cgacgacctt cgggttatga gcccgacgag
    26701 ctaccaggct gctccacccc gcgcctgaaa ctcggcaaat tctactcgtt ttgggtaaaa
    26761 gatgcaaata ctgctgggat ttggtgtacc gagacgggac gtaaaatctg caggcattat
    26821 agtgatccat gccacatttt gtcaacgttt attgctaatc acgtgaatga atatccagtt
    26881 cactttcatt tgttgaatac ttttgccttc tcctgctctc ccttaagcgc attattttac
    26941 aaaaaacaca ctaaactctt cctgtctccg ataaaagatg attaaatgaa aactcattta
    27001 ttttgcataa aaattcagtg agagcggaaa tccaggctca tcatcagtta attaagcagg
    27061 gtgttatttt atgacgacga ttctcaagca tctcccggta ggtcaacgta ttggtatcgc
    27121 tttttctggc ggtctggaca ccagtgccgc actgctgtgg atgcgacaaa agggagcggt
    27181 tccttatgca tatactgcaa acctaggcca gccagacgaa gaggattatg atgcgatccc
    27241 tcgtcgtgcc atggaatacg gcgcggagaa cgcacgtctg atcgactgcc gcaaacaact
    27301 ggtggccgaa ggtattgccg ctattcagtg tggcgcattt cataacacca ccggcggcct
    27361 gacctatttc aacacgacgc cgctgggccg cgccgtgact ggtaccatgc tggttgctgc
    27421 gatgaaagaa gatggcgtga atatctgggg tgacggtagc acctataaag gaaacgatat
    27481 cgaacgtttc tatcgttatg gtctgctgac caatgctgaa ctgcagattt acaaaccgtg
    27541 gcttgatact gactttattg atgaactggg cggccgtcat gagatgtctg aatttatgat
    27601 tgcctgcggt ttcgactaca aaatgtctgt cgaaaaagcc tactccacag actccaacat
    27661 gcttggtgca acgcatgaag cgaaggatct ggaatacctc aactccagcg tcaaaatcgt
    27721 caacccgatt atgggcgtga aattctggga tgagagcgtg aagatcccgg cagaagaagt
    27781 cacagtacgc tttgagcaag gtcatccggt ggcgctgaac ggtaaaacct ttagcaacga
    27841 cgtagaaatg atgctggaag ctaaccgcat cggcggtcgt cacggcctgg gcatgagcga
    27901 ccagattgag aaccgtatca tcgaagcgaa aagccgtggt atttacgaag ctccggggat
    27961 ggcactgctg cacattgcgt atgaacgtct gttgaccggt attcacaacg aagacaccat
    28021 tgagcagtat cacgcgcatg gtcgtcagtt gggccgtcta ctgtaccagg ggcgttggtt
    28081 tgactcccag gcgctgatgc tgcgtgactc tctgcaacgc tgggttgcca gccagatcac
    28141 tggtgaagtt accctggagc tgcgccgtgg gaacgattat tcaatcctga ataccgtctc
    28201 agagaacctg acctacaagc cagagcgtct gacgatggaa aaaggcgact cggtgttctc
    28261 gccagatgat cgtattggtc aattgaccat gcgtaatctg gatatcactg atacccgaga
    28321 gaaacttttt ggttatgcca aaactggcct gctctcctcc tctgccactt caggcgtgcc
    28381 gcaggtggag aatatggaaa acaaaggcca gtaattcgac atcaaccctg cccttcaggg
    28441 ggggggttac cttgcttatc ctctgtaaac tcctttctga acatcacata atcgaaaaca
    28501 tcatggtttg catccacaac ccgtgagtct cctttatagt gtgcaatcac ttcctcaagc
    28561 gtttgcggct gttccggctt tgttaccccc atccacgcat taataaggta attattgtaa
    28621 gctgtcgaaa agatgttgtt ttccgttgtg cgatccacgc catccccaag aacggggcta
    28681 taccagataa acatcgggac atgatatgcc tgctggctag cctccctgcc tccatgaaaa
    28741 tagacgttct tcttcgttgg gtcacgttcc aggccgtggt cggcaaaata catgaccgag
    28801 gcgcggcgat cttttaataa ttcaaaaacc tgacctagca aactatctgt gtaatgaatg
    28861 gagttgtcat agcaggcatc ctgatcgtcc tgcggttgaa acacggcgct ggattgcgga
    28921 taggcgctac aagccggttc atggcttcca tttaaatgaa gaacaatcag tttcttttgc
    28981 tgcgtatttt gctgtaatgc ttgcgataaa tgcggcaaca acaattcatc aaatcctctg
    29041 acataaactg tttccatggc gcgcatggcg atactggtaa ctgcagtacc attctgccga
    29101 aaagcggatt gcgagcttag ccagaaagtc tgaaatcctg cttgattagc catattaata
    29161 atgttgtcgg ggtaattatg aatgtcatga ctcaaaacag aatcagcagt taaagaaagg
    29221 ggaaccgaca gcgcagtgta aggtgcgctg cttattgctt gattaaacag tttgatctgt
    29281 tttctttgtg cttcaacttg cggtgtcgta gagcgtgtat atccatacaa agacatattg
    29341 tcgacacgta cagactcccc cacaatcaac acgtaggtat caatacctgt atccctgact
    29401 gataattgaa aatacggcac cgtgtttgca attgagagta atctttgatg ctctttcgct
    29461 gctaaagcaa aatagttgag attgaaaaac ggcgtatagg tagcaaatcg cgacgctagt
    29521 atatatggac tgaacgtttt tttatttttt gcatctttat aagcaaattg acaagcggaa
    29581 aataaactgc ccgaaatgac aatcagcaat aatattcctg tcactttttt tgtcggcaag
    29641 gaaacatcat attttattat tactgcccaa aaaagaaggg ataaaaaagc aaaggcacat
    29701 agataaggga tatacatccc cagcattttg acaacttcat ccggatcact ctggagcaca
    29761 ctaatcgcaa atccatcatt gaaagttgta ccaaaggtac accatgaata gaggctaata
    29821 ctcatgtctg ccgcagtcag taacacaaat ggtgcggcaa caagcaggcg aagcggaagg
    29881 gatgatatac gttttacaac caggatggtc aggacgaaga acagcaatcg ctgaaccata
    29941 tgcgcgccgg aagaggcgac taagttcgta ataccaaaaa caataacaca aagatacaac
    30001 aaccaatgag atttaaaact tctagcaaat ttgttgaata ctgtcatcca gaaatccaag
    30061 ttcacaacca atataaacaa ttatcaacaa tgttcaattt tatatcagac atgtttttca
    30121 actctgatcc atatcagacc gaaacactgt tagttttttc tttttaaatg atgcggccat
    30181 tgcgttctca gtaattaaat aacattatca atgcgtctct aaacattacg cagaacgtag
    30241 ccatcagtag ttatactgac aggagcagga tggtttatcg agaagtaaac atatccgtat
    30301 tcgtaccgga actggagttg acacaataaa gtgccaatta tgtcagcaga agggaaaagt
    30361 ttataactaa ggcgtaccgg caccatcgtt tcaaggtacc agctacgagt aaagcaactg
    30421 gacgagatac agatacctga caaccattcc tcagaccagg accaaaacga aaaaagacgc
    30481 ttttcagcgt ctcttttctg gagtttggta ccgaggacgg gacttgaacc cgtaagccct
    30541 attgggcact accacctcaa ggtagcgtgt ctaccaattc caccacctcg gcacggatac
    30601 tactttttag ttcgggatat cgctggtcgg cttagccgga gcagctggtt gagtttgttc
    30661 ggttttcgcc ggtgcactca gattttccca ttcgctacct ttattggttt tgttgctgtt
    30721 gatgttaccc agcaccagac tgatgatgaa gaataacgtt gccagcagcg ccgtcatgcg
    30781 ggtcatgaag ttaccagaac cacttgaacc aaacagcgta gcggaagcgc ctgctccgaa
    30841 ggaggctccc atatcagcgc ctttaccttg ctgcagcatg atcagaccaa caaggccaat
    30901 tgccacaata aggaaaacta ccaaaagagc ttcgtacata atcaacctgt tccttgcgga
    30961 gttgccgcgt accaatgctt caaccaataa agcgggagtt tttaatcttt cccactgaag
    31021 cgggtgtgaa tactaaccaa agcgaatgac cttcgcaagg gcaattttat cgcattgtat
    31081 caactgcgga aaaaaacagc aaaaccgatg tgttcgctga gaaaaaaggc gacaatcgcc
    31141 gcctttttag ccagtcattt atcgttttaa acggctttta ctgcatcggc gatgcggtgt
    31201 gcaaattcag tcacctgcgc ttcgtcttcg ccttccacca tcacgcgaat taacggttcg
    31261 gtgccggatt tacgcagcaa cacgcgtcca cggttgccca gcgcagcttc aacctctgcg
    31321 gtcacggctt taactgactc atgctcaagc ggatcgccgc tacctgcggt gtaacgcacg
    31381 ttaaccagaa tctgcgggaa cattttcatg ccgctgcaaa ggtcgtgcag gctcatatgg
    31441 ttacgtgcca tcgccgccag cacctgcaag ccagcaacga tgccgtcacc ggtagtggtt
    31501 ttatccagca ggatcacatg accggaattc tctgcaccga tacgccagcc tttctcctgc
    31561 attttttcca gtacgtagcg gtcacccact ttcgcgcgcg caaatggaat acctaactgt
    31621 ttcagcgcca gctcaagccc catgttactc atcaatgtac ccacagcacc accacgcagc
    31681 tggccctgac gaagaccttc acgcgcgatg atatacatga tctgatcacc atcgacttta
    31741 ttgccttcat ggtcaaccat aatcacgcga tcgccgtcgc cgtcgaaggc aataccgaga
    31801 tccgcttttt cagccagcac acgagcctgg agcgcgcgaa cgtcggtagc ccccacttcg
    31861 gcattgatgt ttacaccgtt cggctcacaa ccgatagcga taacgttcgc ccccagttca
    31921 cgcagcacgt tcggcgcgat gtgataagtc gcaccgtttg cgcaatccac cacaatcttc
    31981 agttcgctga ggctaagttc gttcgggaac gtggctttgc aaaactcgat atagcgaccc
    32041 gcagcatcaa cgatacggct ggctttaccc agttctgccg aatcaacaca gctgatctct
    32101 ttttccattt ccgcttcgat ggcctcttct accgcatccg gtagtttggt gccgtcgata
    32161 gagaaaaatt taatgccatt atcgtagaac gggttatgcg atgcagatat cacaattccg
    32221 gcctctgcgc ggaaggtacg cgtcagataa gccacggccg gtgttggcat cgggccagtg
    32281 aagagtgcgg aaaggcccgc tgccgccaga cccgcttcca gtgctgactc cagcatatag
    32341 ccagaaatac gcgtgtcttt actaataatg atcttacggg agccgtggcg cgccagcact
    32401 ttacccgcgg cccaacccag cttaagcaca aaatcaggtg tgatcggcgc atcccctaca
    32461 cgaccacgaa tcccatcggt accgaaatat ttacgattac tcatagcgtt tgttttcctt
    32521 tgcagacaga gtggcttcca ccacccgcat cgcttctacg gtttctttga cgtcatgaac
    32581 acgaataatg tgcgcgcctt gcattgcggc aatgaccgca caggccagac taccgctcag
    32641 gcgctcggac ggccccacgt tcagcagctg cccaatcatc gattttcgtg acatacctac
    32701 caacagcggc aggttgaaat ggtgaaattc agccaggcgc gccagtaatg aatagttatg
    32761 ggagagattt ttaccgaaac cgaatccggg gtcgagcaac aatttctctt ttgcgatacc
    32821 cgcctgctcg caacgtgcta tttgctcaat aaagtagcga ttcacttctg caaagacatc
    32881 gtcatacttc ggagcttcct gcatggtttt tggatttccc tgcatatgca tcagacaaac
    32941 cggtaaaccg gtttctgccg ccgcctccag agcgccaggt tcggaaaggg agcggatatc
    33001 gttaataatg tgagcgccaa ctttcgctga ctcacggatg acttctggtt tggatgtatc
    33061 taccgagagc cagacttcga agcgttgagc aattgcctca accacaggaa taacacgttg
    33121 caactcttct tcaacgctaa cttccgccgc ccctgggcgc gtggactcgc caccaacgtc
    33181 aatgatcgtc gcgccagcgt tgatcatcag attcgcatgt ttcaccgcat ctatcagcga
    33241 gttatgcgtg ccaccatccg aaaaggaatc aggcgtgacg ttgaggatcc ccattacgtg
    33301 aggatggcta aggtccagtg aagtgccctg ggcaaagagt ttcatggtgt tatccctggt
    33361 atgaattgat aagaaaaaac cccggagcac gccccggggt tttcggtaca aatacagtca
    33421 tctgatgcgg gaacttactt gtcgcctaac tgctctgaca tggtgttacc cgggttcggc
    33481 gtacgcggtt catcaaccgg acgaggagcc tttggactac cattgtcgcc agaattgtta
    33541 gaagcgcctg gttcttccca gcccgctggc ggacgtacat cgcgacgtgc catcaggtca
    33601 tcaatctgcg gtgcgtcgat agtctcatat ttcatgagag catctttcat cgcatgcaga
    33661 atatccatat tgtcggtcag aagctgacgc gcacgattat agttacgctc aatcagtgct
    33721 ttcacttcct ggtcgatgat acgtgcagtt tcatcggaca tatgtttcgc tttcgctacg
    33781 ctacggccga ggaacacttc accttcttct tccgcgtaca gcagtggacc caatttctca
    33841 gagaagcccc actgagtcac catattacgc gccaggttgg tcgcaacttt aatatcgttg
    33901 gacgcaccgg tagaaacatg ttccggcccg tagatgatct cttctgccag acgaccaccg
    33961 tacagcgtag aaatctggct ttccagtttc tgacggctgg cgctgattgc gtcgccctca
    34021 ggcaagaaga aagtcacacc cagcgcacga ccgcgtggga taatcgtcac tttgtgcacc
    34081 ggatcgtgtt ccggcaccaa gcgaccgata atcgcatgac ccgcttcgtg gtaagccgtc
    34141 gattctttct gcgcttccgt catcaccatg gagcgacgtt ccgcacccat catgatttta
    34201 tctttcgctt tttcgaactc aatcatcgac acaacgcgtt tgttgccacg agcagcgaac
    34261 agtgccgctt cgtttaccag gttcgccagg tcagcaccgg agaaaccagg agtaccacgg
    34321 gcaatgattg ccgcgtcgat atcgggtgcc aatggtacgc gacgcatgtg aactttcagg
    34381 atctgctcac gaccgcgaac atctggcaag ccaaccacaa cctgacggtc gaaacggcca
    34441 ggacgcagca gggctgggtc aagaacgtcc ggacggttag tcgcggcgat aacgatgata
    34501 ccttcgttac cttcgaagcc atccatctca accagcatct ggttcagagt ctgttcacgt
    34561 tcatcgtgac caccgcccag accagcgcca cgctggcggc ctacggcgtc gatttcatcg
    34621 ataaagatga tgcacggtgc cgctttcttc gcctgttcga acatgtcacg aacacgggat
    34681 gcacccacac cgacgaacat ttctacgaag tcagaaccgg agatagtaaa gaacggaact
    34741 ttcgcttcgc ctgcaatcgc tttcgccagc aacgttttac cggtacccgg aggaccgacc
    34801 atcaggacgc ctttcgggat cttaccgccg agtttctgga agcggctcgg ctcgcgcaga
    34861 tactctacca gttcagcaac ttcttctttt gcttcgtcgc agcccgcaac gtcagcaaag
    34921 gtcgttttga tctgatcttc cgtcagcatg cgcgctttgc tcttaccaaa cgacatggca
    34981 cctttgccac cgccgccctg catttgacgc atgaagaaga tccagacacc aatcagcaac
    35041 agcatcggga accaagagat gaagatagaa gccagcaggc ttggttcttc aggcggttca
    35101 ccgacaacct tgacgttctt ggtcaacagg ttatccagta atttcggatc ctgaaccgga
    35161 atgtaagtgg tataacggtt actatctttc ttggtaacgt tgatttcacg tccgttgata
    35221 cgcgcttcac gaacctggtc gttattgacc tcttgtagga aggtagagta atccacctta
    35281 cggccattag actcgctggg cccaaagctc tggaatactg acatcagcac aacggcaatg
    35341 accagccaga gtattaggtt tttcgccatg tcactcaagg gattaacctc ttattacaac
    35401 tgtgttaaaa acagcgtcag gatactctat atccagcatc tttcaaactt tcgtctgaaa
    35461 tctcccggtt agggtttacg cccggtcgct acaatataca cttcccgcga acgtgcacga
    35521 gaagagtccg gcttacgaac tttgaccttc gtaaacaggg agcgaatttc ccttagatac
    35581 tcatcgaaac cttcgccctg gaacaccttc actacaaaac tgccacctgg cgctaataca
    35641 tcacgacaca tttctaacgc cagttccacc agatacatgg cacgggggat atccaccgcc
    35701 ggtgttccgc tcatgtttgg tgccatatcg gacatgacaa cctggacttt gctgtcgcca
    35761 acgcgctcca gcagtgcttt catcaccagt tcatcacgaa aatcgccctg aagaaagtcc
    35821 acaccaacga taggatccat aggtaaaaga tcgcaagcga tgatgcggcc tttgccgcca
    35881 atttgggtga ccacatattg tgaccaacca cccggagcag caccaaggtc gacaaccgtc
    35941 attcccggtt taaagagttt gtcactttgc tgtatttcat caagtttaaa ccaggcacgg
    36001 gaacgtaacc cctttttctg tgcctgttga acatatttat cgctaaagtg ttcctgaagc
    36061 cagcggctgg agctggcaga acgcttctta cctgtcattt aactttccca tggggataac
    36121 tcatcgtaac caattgcgta aatttttacg cgcctatttg gtgatatatg ggagatggcg
    36181 gtagaatgac ccgttttcaa tcccaacgta agcaaaaaat acgatgaatc tgagtactaa
    36241 acaaaaacag cacctgaaag gtctggcaca tccgctcaag ccagttgttc tgcttggcag
    36301 taatggtttg accgaagggg tgctggccga gattgaacaa gcgttagagc accatgaact
    36361 catcaaggtg aaaatcgcca ccgaagatcg cgaaacaaaa accttgatcg tggaagctat
    36421 cgtgcgcgaa accggcgcct gtaatgtaca ggtcatcggt aaaacgctgg tgctttatcg
    36481 cccaactaaa gaacgtaaaa tctcgctgcc acgctaagat tatcctaaag ttacacacat
    36541 ttgctgtgta aaacgagggg ttttccgcag gcaggagagc aaaatgccac gctctgttcg
    36601 ttgataaaag gccgcatagc ggcctttttc ctttctttac aatacatcaa catcttgatg
    36661 tattgggtaa ttcttacagg tattccacct taattacttc aaattctact tcgccgcccg
    36721 gcgttttgat gaccacaaca tcatcttctt ctttgccgat caggccacga gcaataggcg
    36781 agtttacaga aatcaggttt tgtttaaagt cagcttcgtc atcgccaacg atgcgataag
    36841 tctgttcttc gtcagaatcc agattcagca ccgttacggt agcaccaaaa ataacgcgcc
    36901 cattgttggg cattttggtg acatcaatca cctgcgcgtt cgacagcttg gcttcgatgt
    36961 ctttaatacg gccttcgcag aaaccctgct gttcacgagc tgcgtggtat tcggcgtttt
    37021 ctttcaggtc gccatgctca cgcgcttccg cgatagcagc aatgatttca ggacggcgca
    37081 cagatttcag aaaatccagc tcttcgcgta atttttcagc gccgcgtaag gtcatcggaa
    37141 tagcttgcat ttgttatacc tcttgaatat tcctgatggg gcaagtcttc acccaccccg
    37201 gctgttcggc ctgcccggca taactcctca ccgggaccag aagcaaaaaa ataccgaccc
    37261 gggtacaagt cccaggtcag ctacaattca cattttgata gtcattttac cctgaagttc
    37321 ccgaagggtc atcgtttact ttatagggcg ttgcgccgta gtatgacggc tcgattccag
    37381 gttgttagcg cgagattatg cgattttcca gatttatcat cggattgacc agctgtatag
    37441 cgttcagtgt tcaggccgcg aatgttgatg agtacgttac tcaactcccc gctggtgcca
    37501 accttgccct gatggtgcaa aaagtcggcg cgtcggcccc cgctattgat taccacagtc
    37561 agcagatggc gctgcccgcc agtacgcaga aagtgattac tgcgctggcg gcgttgattc
    37621 aactcggccc cgattttcgt ttcaccacga cgcttgaaac caaaggcaat gtggaaaacg
    37681 gcgtacttaa gggtgactta gtggcgcgat ttggtgccga tccgacgtta aaacgtcagg
    37741 atattcgcaa tatgatcgcg actttgaaaa aatctggcgt caaccaaatc gatggcaatg
    37801 tgttgataga tacctccatt ttcgccagcc acgataaagc ccccggctgg ccatggaatg
    37861 acatgacaca atgctttagc gctccgcctg ccgctgccat agttgaccgc aactgtttct
    37921 ccgtctcgct ctacagtgcc ccaaaacctg gtgatatggc ttttatacgc gtggcatctt
    37981 attaccccgt tacgatgttc agccaggtac gcaccctccc ccgaggttct gccgaagcgc
    38041 aatactgcga actggatgtc ataccaggcg acctgaaccg ctttacgctg acgggatgcc
    38101 tgccacaacg ttctgagccg ctcccgttgg cttttgccgt gcaggatgga gccagctatg
    38161 ccggggcaat tctgaaagat gagttaaaac aggcaggtat cacctggagc ggaacactgc
    38221 tgcgccagac tcaggttaac gaacctggaa cggtagttgc cagtaaacag tcggccccgt
    38281 tgcacgatct gcttaagatt atgctgaaaa agtcggacaa catgatcgcc gatacggttt
    38341 tccgcatgat aggccatgcg cgcttcaatg tgcctggaac atggcgggcc gggtcggacg
    38401 ccgtgcgtca gatcctgcgc cagcaagccg gtgtcgatat tggaaacacc attattgccg
    38461 atggttcagg gctttcgcgg cataacctga ttgcccccgc caccatgatg caggtgttgc
    38521 aatacattgc ccaacacgac aatgaactta actttatctc catgctgccg ctggcgggct
    38581 atgatggctc tttgcagtac cgtgcaggtc tgcatcaggc gggcgtggat ggaaaagtct
    38641 cagcgaaaac cggttcgttg cagggggtat ataacctggc gggattcatt accacagcga
    38701 gcgggcaacg aatggcgttt gtacaatatc tttctggcta tgcagtagaa ccggcggatc
    38761 agcgtaatcg ccgtattccg ttagtgcgtt ttgaaagccg tttgtataaa gatatttatc
    38821 agaacaatta gtcaaaaaga aaccccggca cat
//
LOCUS       DAJVSY010000017        37820 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.017, whole genome shotgun sequence.
ACCESSION   DAJVSY010000017 DAJVSY010000000
VERSION     DAJVSY010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 37820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37820
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.017"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..378
                     /locus_tag="OQQ19_000813"
     CDS             <1..378
                     /locus_tag="OQQ19_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1802532.1"
                     /translation="ICSNKHPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDEKF
                     MNRKISFRGSSLLTIINSIAVTDLLGIVPYELYNSHRDFLNLKEIKLEHPLPSIKLYI
                     SYNKSSLNNLVFSRFIDRLNESF"
     gene            525..2042
                     /locus_tag="OQQ19_000814"
     CDS             525..2042
                     /locus_tag="OQQ19_000814"
                     /inference="COORDINATES: protein motif:HMM:NF014273.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3440 domain-containing protein"
                     /protein_id="HCS1802533.1"
                     /translation="MSIYKIPLPLNILEAARERITWTLNTLPRVCVSFSGGKDSGLML
                     HLTAELARQMGKKICVLFIDWEAQFSCTINYVQSLRELYTDVIEEFYWVALPLTTQNS
                     LSQYQPEWQCWEPDVEWVRQPPQDAITDPDFFCFYQPGMTFEQFVREFAEWFSQKRPA
                     AMMIGIRADESYNRFVAIASLNKQRFADDKPWTTAAPGGHSWYIYPIYDWKVADIWTW
                     YANHQSLCNPLYNLMYQAGVPLRHMRICEPFGPEQRQGLWLYHVIEPDRWAAMCARVS
                     GVKSGGIYAGHDNHFYGHRKILKPEHLDWQEYALLLLNSMPEDDRIKAINEIRMAIHQ
                     VSPFREEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLQKSIEIDGFTQPIVVTHTDK
                     NAMEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQIT
                     AMSEIVRELSQLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK"
     gene            complement(2043..3192)
                     /gene="ybdL"
                     /locus_tag="OQQ19_000815"
                     /pseudo
     CDS             complement(2043..3192)
                     /gene="ybdL"
                     /locus_tag="OQQ19_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308666.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-oxo-acid transaminase"
     gene            3301..4389
                     /gene="hcxA"
                     /locus_tag="OQQ19_000816"
     CDS             3301..4389
                     /gene="hcxA"
                     /locus_tag="OQQ19_000816"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxycarboxylate dehydrogenase HcxA"
                     /protein_id="HCS1802534.1"
                     /translation="MPHNPIRVVVGPANYFSHPRSFNHLNDFFTDEQLSRAVWIYGKR
                     AIAAAQTKLPPAFGLPGAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTA
                     KALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIIL
                     NAPQQYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALA
                     DQQNQQLTQSFCDVVDAIIAGGGMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGT
                     KVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRP
                     VESIHYLPVTLTPDTLRAAFEKVESFKA"
     gene            complement(4399..4596)
                     /locus_tag="OQQ19_000817"
     CDS             complement(4399..4596)
                     /locus_tag="OQQ19_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HCS1802535.1"
                     /translation="MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTY
                     EEFFRERQDARYGGKGGARCC"
     gene            complement(4778..6883)
                     /gene="cstA"
                     /locus_tag="OQQ19_000818"
     CDS             complement(4778..6883)
                     /gene="cstA"
                     /locus_tag="OQQ19_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein CstA"
                     /protein_id="HCS1802536.1"
                     /translation="MNKSGKYLVWTVLSVMGAFALGYIALNRGEQINALWIVVASVCI
                     YLIAYRFYGLYIAKNVLAVDPKRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPL
                     VGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAG
                     VIALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLALFMGIYLRYLRPGRI
                     GEVSVIGLVFLIFAIISGGWVAESPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLL
                     APRDYLSTFLKIGTIVGLAVGILIMRPTLTMPALTKFVDGTGPVWTGNLFPFLFITIA
                     CGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFA
                     MNSPMAVLAPAGTADVVASAAQVVSSWGFSITPDTLNQIASEVGEQSIISRAGGAPTL
                     AVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVVSPG
                     LKRTDSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLC
                     AVVLFKMKRQRYAWVALVPTAWLLICTLTAGWQKAFSPDAKVGFLAIANKFQAMIDSG
                     NIPSQYTESQLAQLVFNNRLDAGLTIFFMVVVVVLALFSIKTALAALKDPKPTAKETP
                     YEPMPENVEEIVAQAKGAH"
     gene            complement(7064..7477)
                     /gene="entH"
                     /locus_tag="OQQ19_000819"
     CDS             complement(7064..7477)
                     /gene="entH"
                     /locus_tag="OQQ19_000819"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proofreading thioesterase EntH"
                     /protein_id="HCS1802537.1"
                     /translation="MIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDT
                     RTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCVVGTELNATHHRPVSEGKVRGVC
                     QPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVLG"
     gene            complement(7480..8226)
                     /gene="entA"
                     /locus_tag="OQQ19_000820"
     CDS             complement(7480..8226)
                     /gene="entA"
                     /locus_tag="OQQ19_000820"
                     /EC_number="1.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706451.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
                     EntA"
                     /protein_id="HCS1802538.1"
                     /translation="MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQY
                     PFATEVMDVADAGQVAQVCQRLLAETERLDVLINAAGILRMGATDQLSKEDWQQTFAV
                     NVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGL
                     ELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEI
                     ANTILFLASDLASHITLQDIVVDGGSTLGA"
     gene            complement(8226..9083)
                     /gene="entB"
                     /locus_tag="OQQ19_000821"
     CDS             complement(8226..9083)
                     /gene="entB"
                     /locus_tag="OQQ19_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin biosynthesis bifunctional
                     isochorismatase/aryl carrier protein EntB"
                     /protein_id="HCS1802539.1"
                     /translation="MAIPKLQAYALPESHDIPQNKVDWAFELQRAALLIHDMQDYFVS
                     FWGENCPMMEQVIANIAALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGLTRS
                     PEQQKVVDRLTPDADDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTT
                     ATDAFMRDIKPFMVADALADFSRDEHLMSLKYVAGRSGRVVMTEELLPAPVPASKAAL
                     REVILPLLDESDEPFDDDNLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAW
                     WKLLSREVK"
     gene            complement(9097..10707)
                     /gene="entE"
                     /locus_tag="OQQ19_000822"
     CDS             complement(9097..10707)
                     /gene="entE"
                     /locus_tag="OQQ19_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2,3-dihydroxybenzoyl)adenylate synthase EntE"
                     /protein_id="HCS1802540.1"
                     /translation="MSIPFTRWPEEFARRYREKGYWQDLPLTDILTRHAASDSIAVID
                     GELQLSYRELNQAADNLACTLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL
                     ALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLHNDSGE
                     HNLQDAINHPADGFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC
                     QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVT
                     ALVPPAVSLWLQALAEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGM
                     AEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFR
                     GYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENL
                     LLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPDRVE
                     CVDSLPLTAVGKVDKKQLSQWLASRASA"
     gene            complement(10717..11892)
                     /gene="entC"
                     /locus_tag="OQQ19_000823"
     CDS             complement(10717..11892)
                     /gene="entC"
                     /locus_tag="OQQ19_000823"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase EntC"
                     /protein_id="HCS1802541.1"
                     /translation="MDTSLAEEVQQTMATLAPNRFFFMSPYRSFTTSGCFARFDEPAV
                     NGDSPDSPFQQKLAALFADAKVQGIKNPVMVGAIPFDPRQPSSLYIPESWQSFSRQEK
                     QASARRFTRSQSLNVVERQAIPEQTTFEQMVARAAALTATPQVDKVVLSRLIDITTDA
                     AIDSGVLLERLIAQNPVSYNFHVPLADGGVLLGASPELLLRKDGERFSSIPLAGSARR
                     QPDEVLDREAGNRLLASEKDRHEHELVTQAMKEVLRERSSELHVPSSPQLITTPTLWH
                     LATPFEGKANSQENALTLACLLHPTPALSGFPHQAATQVIAELEPFDRELFGGIVGWC
                     DSEGNGEWVVTIRCAKLRENQVRLFAGAGIVLASSPLGEWRETGVKLSTMLNVFGLH"
     gene            12267..13223
                     /gene="fepB"
                     /locus_tag="OQQ19_000824"
     CDS             12267..13223
                     /gene="fepB"
                     /locus_tag="OQQ19_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe2+-enterobactin ABC transporter
                     substrate-binding protein"
                     /protein_id="HCS1802542.1"
                     /translation="MRLAPLYRNALLLTGLLLSGIAAVQAADWPRQITDSRGTHTLES
                     QPQRIVSTSVTLTGSLLAIDAPVIASGATTPNNRVADDQGFLRQWSKVAKERKLQRLY
                     IGEPSAEAVAAQMPDLILISATGGDSALALYDQLSTIAPTLIINYDDKSWQSLLTQLG
                     EITGHEKQAAERIAQFDKQLAAAKEQIKLPPQPVTAIVYTAAAHSANLWTPESAQGQM
                     LEQLGFTLAKLPTGLNASQSQGKRHDIIQLSGENLAAGLNGESLFLFAGDQKDADAIY
                     ANPLLAHLPAVQNKQVYALGTETFRLDYYSAMQVLERLKALF"
     gene            complement(13227..14477)
                     /gene="entS"
                     /locus_tag="OQQ19_000825"
     CDS             complement(13227..14477)
                     /gene="entS"
                     /locus_tag="OQQ19_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin transporter EntS"
                     /protein_id="HCS1802543.1"
                     /translation="MNKQSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQI
                     QMMTHSTWLVGLSVTLTGGAMFVGLMVGGVLADRYERKKVILLARGTCGIGFIGLCLN
                     ALLPEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSV
                     ISPMIGGLLLATGGVAWNYGLAAAGTFITLLPLLSLPALPPPPQPREHPLKSLLAGFR
                     FLLASPLVGGIALLGGLLTMASAVRVLYPALADNWQMSAAEIGFLYAAIPLGAAIGAL
                     TSGKLAHSARPGLLMLLSTLGSFLAIGLFGLMPMWILGVVCLALFGWLSAVSSLLQYT
                     MLQTQTPEAMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGV
                     LLLLVLVELRRFRQTPPQVTASDS"
     gene            14588..15592
                     /gene="fepD"
                     /locus_tag="OQQ19_000826"
     CDS             14588..15592
                     /gene="fepD"
                     /locus_tag="OQQ19_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-siderophore ABC transporter permease"
                     /protein_id="HCS1802544.1"
                     /translation="MSGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEAF
                     SGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGAS
                     FAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAA
                     VLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALN
                     SLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGA
                     DHRWSLPVTLLATPALLLFADIIGRVIVPGELRVSVVSAFIGAPVLIFLVRRKTRGGA
                     "
     gene            15589..16581
                     /gene="fepG"
                     /locus_tag="OQQ19_000827"
     CDS             15589..16581
                     /gene="fepG"
                     /locus_tag="OQQ19_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-enterobactin ABC transporter permease"
                     /protein_id="HCS1802545.1"
                     /translation="MIYVSRRLLITCLLLISACVVAGIWGLRSGAVTLETSQVFAALM
                     GDAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWS
                     GVLVAMVLFGQDLTAIALAAMVGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVA
                     FNTWLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLE
                     MGDDTACALGVSVERSRLLMMLVAVVLTAAATALAGPISFIALVAPHIARRISGTARW
                     GLTQAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQESRKK"
     gene            16578..17393
                     /gene="fepC"
                     /locus_tag="OQQ19_000828"
     CDS             16578..17393
                     /gene="fepC"
                     /locus_tag="OQQ19_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-enterobactin ABC transporter ATP-binding
                     protein"
                     /protein_id="HCS1802546.1"
                     /translation="MTESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGC
                     GKSTLLRTLSRLMTPAHGHVWLDGEHIKHYASKEVARRIGLLAQNATTPGDITVQELV
                     ARGRYPHQPLFTHWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ
                     ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALR
                     EGKIVAQGAPKEIVTAELIERIYGLRCMIIDDPVAGTPLVVPLERTAPSTANS"
     gene            complement(17390..18523)
                     /gene="fepE"
                     /locus_tag="OQQ19_000829"
     CDS             complement(17390..18523)
                     /gene="fepE"
                     /locus_tag="OQQ19_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen length regulator"
                     /protein_id="HCS1802547.1"
                     /translation="MSSLNIKQGSDAHFSEYPLASPSSNEIDLLNLIEVLWRAKKTVM
                     AVVFAFACAGLLISFILPQKWTSSAVITPAEAIQWQDLEKTFTKLRVLDLDVNIDRGG
                     AFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS
                     KKKDEPSLYTSWTLSFTAPTSKEAQTVLSGYIDYISALVVKESIENVRNKLEIKTQFE
                     KEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGAD
                     GIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKANVNDVNFTPFKYQLSPSLPVKKD
                     GPGKAIIVILSALIGGMVACGSVLLRYAMASRKQDAMMADHLV"
     gene            complement(18738..22619)
                     /gene="entF"
                     /locus_tag="OQQ19_000830"
     CDS             complement(18738..22619)
                     /gene="entF"
                     /locus_tag="OQQ19_000830"
                     /EC_number="6.3.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin non-ribosomal peptide synthetase
                     EntF"
                     /protein_id="HCS1802548.1"
                     /translation="MSQHLPLVAAQPGIWMAEKLSDLPSAWSVAHYVELTGEVDAPLL
                     ARAVVDGLAQADTLRMRFTEDNGEVWQWVDDALTFELPEIIDLRTNIDPHGTAQALMQ
                     ADLQQDLRVDSGKPLVFHQLIQVADNRWYWYQRYHHLLVDGFSFPAITRQIANIYCTW
                     LRGEPTPASPFTPFADVVEEYQQYRESEAWQRDAAFWAEQRRQLPPPASLSPAPLPGR
                     SASADILRLKMEFTDGEFRQLATQLSGVQRTDLALALTALWLGRLCNRMDYAAGFIFM
                     RRLGSAALTATGPVLNVLPLGIHIAAQETLPELATRLAAQLKKMRRHQRYDAEQIVRD
                     SGRAAGDEPLFGPVLNIKVFDYQLDIPGVQAQTHTLATGPVNDLELALFPDEHGDLSI
                     EILANKQRYDEPTLIQHAERLKMLIAQFAADPALLCGDVDIMLPGEYAQLAQINATQV
                     EIPETTLSALVAEQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSV
                     AVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTDDQLPRF
                     ADVPDLTNLCYNAPLKPQGSAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRL
                     LWMQNHYLLTGEDVVAQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFF
                     AEYGVTTTHFVPSMLAAFVASLTPQTARQSCATLKQVFCSGEALPADLCREWQQLTSV
                     PLHNLYGPTEAAVDVSWYPAFGEELAQVRGSSVPIGYPVWNTGLRILDAMMHPVPPGV
                     AGDLYLTGIQLAQGYLGRPDLTASRFIADPFVPGERMYRTGDVARWLDNGAVEYLGRS
                     DDQLKIRGQRIELGEIDRVMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSG
                     LPLDTSALQAQLRETLPPHMVPVVLLQLPLLPLSANGKLDRKALPLPELKAQAPGRAP
                     KAGSETIIAAAFASLLGCDVQDADADFFALGGHSLLAMKLAAQLSRQVARQVTPGQVM
                     VASTVAKLATIIDAEEDSTRRMGFETILPLREGNGPTLFCFHPASGFAWQFSVLSRYI
                     DPQWSIIGIQSPRPNGPMHTAANLDEVCEAHLATLLEQQPHGPYYLLGYSLGGTLAQG
                     IAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGS
                     TSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWIAEL
                     DIYRQDCAHVDIISPGAFVKIGPIIRATLNR"
     gene            complement(22616..22834)
                     /gene="ybdZ"
                     /locus_tag="OQQ19_000831"
     CDS             complement(22616..22834)
                     /gene="ybdZ"
                     /locus_tag="OQQ19_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin biosynthesis protein YbdZ"
                     /protein_id="HCS1802549.1"
                     /translation="MAFSNPFDDPQGAFYILRNAQGQFSLWPQQCALPAGWDIVCQPQ
                     SQESCQQWLEAHWRTLTPANFTQLQEAQ"
     gene            complement(22837..24039)
                     /gene="fes"
                     /locus_tag="OQQ19_000832"
     CDS             complement(22837..24039)
                     /gene="fes"
                     /locus_tag="OQQ19_000832"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin esterase"
                     /protein_id="HCS1802550.1"
                     /translation="MTALKVGSESWWQSKHGPEWQRLNDEMFEVTFWWRDPQGSEEYS
                     PIKRVWVYITGVTDHHQNSQPQSMQRIAGTDVWQWTTQLNANWRGSYCFIPTERDDIF
                     SAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGRGHAVSALEMPQAPLQPGWDCPQA
                     PEIPAKEIIWKSERLKNSRRVWIFTTGDATAEERPLAVLLDGEFWAQSMPVWPVLTSL
                     THRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKAIAPFSDRADRTV
                     VAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRGGQQEGVLLEKLKAGEVSAEG
                     LRIVLEAGIREPMIMRANQALYAQLHPIKESIFWRQVDGGHDALCWRGGLMQGLIDLW
                     QPLFHDRS"
     gene            24282..26522
                     /gene="fepA"
                     /locus_tag="OQQ19_000833"
     CDS             24282..26522
                     /gene="fepA"
                     /locus_tag="OQQ19_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore enterobactin receptor FepA"
                     /protein_id="HCS1802551.1"
                     /translation="MNKKIHSLALLVNLGIYGVAQAQEPTDTPVSHDDTIVVTAAEQN
                     LQAPGVSTITADEIRKNPVARDVSEIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPE
                     NTLILIDGKPVSSRNSVRQGWRGERDTRGDTSWVPPEMIERIEVLRGPAAARYGNGAA
                     GGVVNIITKKGSGEWHGSWDAYFNAPEHKEEGATKRTNFSLTGPLGDEFSFRLYGNLD
                     KTQADAWDINQGHQSARAGTYATTLPAGREGVINKDINGVVRWDFAPLQSLELEAGYS
                     RQGNLYAGDTQNTNSDAYTRSKYGDETNRLYRQNYSLTWNGGWDNGVTTSNWVQYEHT
                     RNSRIPEGLAGGTEGKFNEKATQDFVDIDLDDVMLHSEVNLPIDFLVNQTLTLGTEWN
                     QQRMKDLSSNTQALTGANTGGAIDGVSATDRSPYSKAEIFSLFAENNMELTDSTIVTP
                     GLRFDHHSIVGNNWSPALNISQGLGDDFTLKMGIARAYKAPSLYQTNPNYILYSKGQG
                     CYASAGGCYLQGNDDLKAETSINKEIGLEFKRDGWLAGVTWFRNDYRNKIEAGYVAVG
                     QNAVGTDLYQWDNVPKAVVEGLEGSLNVPVSETVMWTNNITYMLKSENKTTGDRLSII
                     PEYTLNSTLSWQAREDLSMQTTFTWYGKQQPKKYNYKGQPAVGPETKEISPYSIVGLS
                     ATRDVTKNVSLTGGVDNLFDKRLWRAGNAQTTGDLAGANYIAGAGAYTYNEPGRTWYM
                     SVNTHF"
     gene            26697..27317
                     /gene="entD"
                     /locus_tag="OQQ19_000834"
     CDS             26697..27317
                     /gene="entD"
                     /locus_tag="OQQ19_000834"
                     /EC_number="6.3.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415115.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin synthase subunit EntD"
                     /protein_id="HCS1802552.1"
                     /translation="MKTTHTSLPFAGHTLHFVEFDPANFCEQDLLWLPHYAQLQHAGR
                     KRKAEHLAGRIAAIYALREYGYKCVPAIGELRQPVWPAEVYGSISHCGATALAVVSRQ
                     PIGVDIEEIFSAQTATELTDNIITPAEHERLADCGLAFSLALTLAFSAKESAFKASEI
                     QTDAGFLDYQIISWNKQQVIIHRENEMFAVHWQIKEKIVITLCQHD"
     gene            complement(27439..27591)
                     /gene="hokE"
                     /locus_tag="OQQ19_000835"
     CDS             complement(27439..27591)
                     /gene="hokE"
                     /locus_tag="OQQ19_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokE"
                     /protein_id="HCS1802553.1"
                     /translation="MLTKYALAAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVL
                     AYEPKK"
     gene            28044..29162
                     /locus_tag="OQQ19_000836"
     CDS             28044..29162
                     /locus_tag="OQQ19_000836"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HCS1802554.1"
                     /translation="MPLPDFHVSEPFTLGIELEMLVVNPPGYDLSQDSSILIDAVKNK
                     ITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAAADHHLEICGGGTHPF
                     QKWQRQEVCDNERYQRTLENFGYLIQQVTVFGQHVHVGCASGDDAIYLLHGLSRFVPH
                     FIALSAASPYMQGTDTRFASSRPNIFSAFPDNGPMPWVSNWQQFEALFRCLSYTTMID
                     SIKDLHWDIRPSPHFGTVEVRVMDTPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKD
                     YLLYKFNRFQACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSAHKIGASSAIEAL
                     HRQVVSGLNEAQLMRDFVADGGSLIGLVKKHCEIWAGD"
     gene            29228..29476
                     /locus_tag="OQQ19_000837"
     CDS             29228..29476
                     /locus_tag="OQQ19_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1158 domain-containing protein"
                     /protein_id="HCS1802555.1"
                     /translation="MKHPLETLTTAAGILLMAFLSCLLLPAPALGLTLAQKLVTMFHL
                     MDLSQLYTLLFCLWFLVLGAIEYFVLRFIWRRWFSLAD"
     gene            29541..29909
                     /locus_tag="OQQ19_000838"
     CDS             29541..29909
                     /locus_tag="OQQ19_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HCS1802556.1"
                     /translation="MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSS
                     ELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLIND
                     SWNLVVDGLAKRDQKRVRPG"
     gene            30003..30656
                     /gene="nfsB"
                     /locus_tag="OQQ19_000839"
     CDS             30003..30656
                     /gene="nfsB"
                     /locus_tag="OQQ19_000839"
                     /EC_number="1.5.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NAD(P)H nitroreductase"
                     /protein_id="HCS1802557.1"
                     /translation="MDIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQ
                     PWHFIVASTEEGKARVAKSAAGNYVFNERKILDASHVVVFCAKTAMDDAWLKLVVDQE
                     DADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLD
                     AVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV"
     gene            30764..32011
                     /gene="ybdG"
                     /locus_tag="OQQ19_000840"
     CDS             30764..32011
                     /gene="ybdG"
                     /locus_tag="OQQ19_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel YbdG"
                     /protein_id="HCS1802558.1"
                     /translation="MQDLISQVGDLAGIEIDHTTSMVMIFGIIFLTAVVVHIILHWVV
                     LRTFEKRAIASSRLWLQIITQNKLFHRLAFTLQGIIVNIQAVFWLQKGTEAADILTTC
                     AQLWIMMYALLSVFSLLDVILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLL
                     IGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGT
                     VIDIGLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIRF
                     LDEDEMQRLNKAHLLKPYLTSRHQEINEWNRQQGSTESILNLRRMTNIGTFRAYLNEY
                     LRNHPRIRKDMTLMVRQLAPGDNGLPLEIYAFTNTVVWLEYESIQADIFDHIFAIVEE
                     FGLRLHQSPAGNDIRSLAGAFKQ"
     gene            complement(32079..33455)
                     /gene="pheP"
                     /locus_tag="OQQ19_000841"
     CDS             complement(32079..33455)
                     /gene="pheP"
                     /locus_tag="OQQ19_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine transporter"
                     /protein_id="HCS1802559.1"
                     /translation="MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLG
                     IGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFL
                     SGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGET
                     EFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVI
                     MFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYICSLVVLLALYPWVEVKSN
                     SSPFVMIFHNLDSNEVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTR
                     VSHRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRF
                     RAAMRRQGRETQFKALLYPFGNYLCIAFLGMILLLMCTMDDMRLSAILLPVWIVFLFV
                     AFKTLRRK"
     gene            complement(33557..36701)
                     /gene="cusA"
                     /locus_tag="OQQ19_000842"
                     /pseudo
     CDS             complement(33557..36701)
                     /gene="cusA"
                     /locus_tag="OQQ19_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415107.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(+)/Ag(+) efflux RND transporter permease
                     subunit CusA"
     gene            complement(36713..>37820)
                     /gene="cusB"
                     /locus_tag="OQQ19_000843"
     CDS             complement(36713..>37820)
                     /gene="cusB"
                     /locus_tag="OQQ19_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Cu(+)/Ag(+) efflux RND transporter periplasmic
                     adaptor subunit CusB"
                     /protein_id="HCS1802560.1"
                     /translation="RKILFWYDPMYPNTRFDKPGKSPFMDMDLVPKYADEESSASGVR
                     IDPTQTQNLGVKTATVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVG
                     DKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLI
                     ATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWL
                     VKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATRTLQLRLEVDNADEALKPGMNAWL
                     QLNTASEPMLLIPSQGLIDTGSEQRVITIDADGRFVPKRVAVFQASQGVTALRSGLAE
                     GEKVVSSGLFLIDSEANISGALERMRSESATHAH"
BASE COUNT         9071 a        10550 c         9637 g         8562 t
ORIGIN      
        1 atttgtagta ataagcatcc gcgaattact gacaatagca cttatgaaca aattatggca
       61 gaagagttca cccaattaat atccaaatca gcaggagttg atgatattca aatggaaata
      121 gacgagaagt ttatgaatcg caaaatttca tttcgtggtt cctctttgct gacaataatt
      181 aatagcattg cagttacaga tttactggga atagtcccct atgaacttta taactcccac
      241 cgtgactttc ttaatttaaa agagataaaa ctagaacatc cgttaccttc aataaagctt
      301 tacatttcct ataataaatc ttctttaaat aatttggtgt tctcccgatt tattgaccgt
      361 ctaaatgaga gtttttgata tataactaca gacagctact ataactttca tctatttatt
      421 cacagcgcga atgaaaaata aaacactctg ctttacagtg tttactttat aattaacagt
      481 cttatctcac tgttcaccct gtaacgttca gagagcgtct tcagatgtct atttataaaa
      541 ttcctcttcc gctcaatatt ctggaagctg cacgagagcg tattacctgg acactcaaca
      601 ccctaccccg cgtttgtgtc tcattttctg gcggcaaaga ctctggttta atgctgcatc
      661 tgacagccga acttgcccga caaatgggca aaaaaatctg cgttttgttt atcgactggg
      721 aggcgcaatt ctcttgcact attaactatg ttcagtccct gcgcgagttg tacaccgatg
      781 tcatcgaaga gttttactgg gttgcgctcc cgcttacgac gcaaaattcc ctttcacaat
      841 accaacccga atggcagtgc tgggaacctg atgtcgaatg ggtgcgtcag cccccgcaag
      901 atgcgataac cgatcctgac tttttctgct tttaccagcc aggcatgacc ttcgaacaat
      961 ttgtacgtga gtttgccgaa tggttttcac aaaaacgtcc ggcggcgatg atgatcggca
     1021 tccgtgcgga tgagtcctac aaccgttttg tcgccatcgc cagtttaaat aaacaacgtt
     1081 ttgccgacga taaaccatgg actacggccg caccaggcgg tcatagctgg tacatttacc
     1141 ccatttacga ctggaaagtg gctgatatct ggacctggta tgcaaatcat caaagtctct
     1201 gcaacccact gtataaccta atgtatcagg caggcgttcc tctgcgtcat atgcgaattt
     1261 gcgaaccttt tggcccggag caacgacaag gattatggct ctatcacgtt atcgaaccgg
     1321 atcgctgggc tgctatgtgc gcacgagtca gcggggtaaa aagtggcggc atttacgccg
     1381 gacatgacaa tcatttctat gggcatcgga aaatcctcaa gccagaacat ttagactggc
     1441 aagaatatgc attattgctg ctcaatagca tgccggaaga tgatcgcatc aaagcgatta
     1501 atgaaatccg catggcgatc catcaggtta gcccctttcg tgaagagcca gtggattgcg
     1561 ttctgtgggt taaaaacagc caacttatgc ctaatgatta caacccaaac aacgtggcac
     1621 cacccgaaaa aaaactgctg caaaaatcca ttgaaataga tggttttacc caacccattg
     1681 tggtcacaca tacggataaa aatgccatgg aaatcgtgga tggttttcac cgccatgaaa
     1741 ttggtaaagg ctcatcatca ttaaaattac gcttaaaagg ttatttgccg gtgacctgtc
     1801 tggaaggtac gcgtaatcaa cgcatcgccg cgactattcg tcataatcgc gctcgtggac
     1861 gccatcaaat caccgccatg tcggaaatcg tccgtgaact tagccagttg ggatgggacg
     1921 ataataaaat tggcaaagag ctgggaatgg acagcgacga agtgctgcgc ctgaagcaaa
     1981 ttaacggcct gcaagagttg tttgccgacc gtcaatattc ccgcgcctgg acggttaaat
     2041 agctaaagct ggcgcaggcg ttcagctgct gccagcaacg tcgattcctt cttggcaaaa
     2101 cagagacgaa tcagtttatg tgggaaggga tcggcgcaaa acaccgacag cggaatcgcc
     2161 gccacgccgt gctcccgcgt cagccactgg caaaactcaa catcatccag ggtagaaacc
     2221 tcgctgtaat ccaccagcaa aaagtatgta ccttcacacg gtaaaatctc cagccggctt
     2281 tcatttaaag cattcaccag aatatcgcgc ttctggcgat aaaagtccgg taacgcaaga
     2341 taatgctcag gttctgcacg tagcatatca gcaagcgcca gctgtgccgg ggtattcacc
     2401 gaaaaggtca gatactgatg taccttgcga atttcggcgc tgatgggcgc tggcgcaaca
     2461 caataaccca ctttccagcc ggtcatatga tagatcttgc caaatgaaga aaccgccact
     2521 gcccgctcac gcagctgcgg atgcgccagc acactggcat ggccctgttg tgaaaagttg
     2581 atgtgctcgt agacttcatc gctaatgaca aaaatctcgt gcccggcgat cgcctgccac
     2641 aaagcggcga aatcagcctg ctgccagaca gttgcactgg ggttatgcgg agtgttgagg
     2701 atcaccagtc tggtgcgctc gcttaataat gcggcaaatt cctgccagtc aaggtggttg
     2761 cagtgccata cgcttcacta ttcccccaga aagcgcgatg gcgggggcgt aactgtcata
     2821 gctgggatca aaacaaatca cttcatcgcc attgcgcacc agtgcggtaa tcgccgcgta
     2881 taacgcttcc gtcgcccctg ccgttacggt gatatcgcta tcggcatctg gttgatagcc
     2941 atacaaacgt tccgttttct gagcaatcgc ctcgcgcaag gcctgcacgc cggtcatggg
     3001 cgcgtattgg tttgccccct gggcaacgtg gtacgccagc cgctcctgta aatagcgcgg
     3061 accatcaaaa tcaggaaagc cttgcgacag gttaatcgcc tggtgttgct gcgccagcgc
     3121 gctcatctgg gtgaaaatag tggtgccaag ttgtggaagt ttgctttgtg gaatcagagg
     3181 gttatttgtc atttttattg tacctgacga agttgcgtgt tgaaggcact ataacacgat
     3241 gctagtattt ggcaatcaag acgtttagat gtctaaataa aacaataagg acaacacaac
     3301 atgcctcaca atcctatccg cgtggtcgtc ggcccggcta actacttttc acatccaaga
     3361 agtttcaatc acctgaacga ttttttcact gatgaacaac tttctcgcgc ggtgtggatc
     3421 tacggcaaac gcgccattgc tgcggcgcaa accaaacttc cgccagcgtt tggacttcca
     3481 ggggcaaagc atattttgtt tcgtggtcat tgcagcgaaa gcgatgtaca gcaactggcg
     3541 gctgagtccg gtgacgatcg cagcgtggtg attggcgtcg gcggcggcgc actgctcgac
     3601 accgcgaaag ccctcgcccg ccgtctcggt ctgccatttg ttgccgttcc gacgatcgcc
     3661 gctacctgcg ccgcctggac accgctctcc gtctggtata acgatgccgg acaggcgctg
     3721 cattatgaga ttttcgacga cgccaatttt atggtgctgg tggaaccgga gattatcctc
     3781 aatgcaccgc aacaatatct gctggcgggg atcggtgaca cgctggcgaa atggtatgaa
     3841 gcggtggtgc tggctccgca accagaaacg ttgccgctaa ccgtgcggct ggggatcaat
     3901 aatgcgcagg ccattcgcga cgtcttgtta aacagtagcg aacaggcact tgccgatcag
     3961 caaaatcagc agttaacgca atcattttgc gatgtggtgg atgctattat tgctggtggt
     4021 gggatggtcg gtggtctggg cgatcgtttt acgcgtgtgg cggcggctca tgccgtgcat
     4081 aacggtctga ctgtcctgcc gcaaaccgag aagtttcttc acggcaccaa agtcgcttac
     4141 ggaattctgg tgcaaagcgc cttgctgggt caggatgatg tgctggcgca attaaccggg
     4201 gcgtatcagc gttttcatct gccgactacg ctggcggagc tggaagtgga tatcaataat
     4261 caggcggaga tcgacaaagt gattgcccac accttgcgcc cggtggagtc cattcattac
     4321 ctgccagtca cgctgacacc agatacgttg cgtgcagcgt tcgaaaaagt ggaatcgttt
     4381 aaagcctgac gtgcaaattt agcagcagcg cgcgccgcct tttccaccgt agcgcgcgtc
     4441 ctgccgctca cggaaaaact cctcgtaggt catcggcgtt tgatcgggat ggttaacccg
     4501 catatgttcg acatagttgt cgtaatcagg cataccaatc atcagcttcg ccgcctgacc
     4561 taaatatttt ccggcttttg ccagtgaatc aaacatcttg gcctccgcta accatgttgc
     4621 tgaaagagtg ccggatgcgg cgtgaacgct ttatccggcc tacaaatgct atcaacgcac
     4681 tcggtcagtc ccctcgcccc atcggggaga gggttagggt gagggggaac cctcggcact
     4741 atgccaacat tcgccaacat cccccctcac tctgacttta gtgcgcgcct ttcgcctgcg
     4801 ctacgatctc ctcgacattt tccggcatcg gctcatacgg cgtttctttc gccgttggct
     4861 tcggatcttt caatgccgca agtgccgtct taatcgagaa cagtgccaga accaccacga
     4921 ccaccataaa gaagatggtt aacccggcat ccagacggtt gttgaacacc agttgcgcca
     4981 gctgtgactc agtatactgc gacggaatat tgccgctgtc gatcattgcc tggaacttgt
     5041 tagcaatggc caggaagccg actttcgcat ccgggctaaa cgctttctgc cagccagcgg
     5101 tcagggtaca aatcagcagc caggccgttg gtaccagcgc cacccaggcg taacgttgac
     5161 gtttcatctt gaacaacacc acggcacaga gcatcagcgc catccctgcc agcatctggt
     5221 tggcaatacc aaacagcggc cacagagtgt taataccgcc cagcggatcg accacgccct
     5281 gatggaggaa gtagccccac gccagtacgc acagcgccgt tgccagcagg ttagcaggca
     5341 gtgaatcggt ccgcttcagg ccaggagaca ccacgcccag cagatcctgc aacataaagc
     5401 gcgcagcacg cgtacccgca tctaccgccg tcagaataaa cagagcttca aacagaatgg
     5461 cgaagtgata ccagaacgcc acatccatca taccacccag cgcaccgtgc aggatgtaag
     5521 ccatccccac cgccaacgtc ggcgcaccgc ccgcacggga aatgatcgac tgttcaccca
     5581 cttcgctggc aatctggttg agcgtatctg gtgtaatgct aaagccccag ctactcacca
     5641 cctgcgcggc agaagcgacc acatccgccg tccctgctgg agccagcacc gccattgggc
     5701 tgttcatggc aaagtaaacg cccggatcga tgatacaggc ggaaaccagc gccataatcg
     5761 ccacgaagga ttccattaac attccaccgt agccgataaa acaagcctgc ccttcgttcg
     5821 ccagcatctt cggcgtggtg ccggaagaga tcagcgcatg gaagccagac accgcgccac
     5881 aggcgatggt gataaacagg aacgggaaca ggttaccggt ccataccggg ccagtgccat
     5941 cgacaaattt ggtcagcgca ggcatggtca gcgtcgggcg cataatcaaa atgcctaccg
     6001 ccagaccgac gatcgtcccg attttcagga aggtagagag gtagtcacgc ggggccagca
     6061 gcaaccacac cggcagcacc gccgccacaa aaccgtaacc caccagcatc caggtcagct
     6121 gcacgccggt aaagtcaaag tacggtgccc aggtcggact ttctgccacc cagccgccag
     6181 agataatggc gaaaatcagg aataccagac cgatgaccga cacttcacca atacgccccg
     6241 gacgcagata gcgcaggtag atccccataa acagcgccag cggaatggtg aacgcaacgg
     6301 tatacgttcc ccacgggcta tgagtcaggg ctttcaccac gatcatcgcc agtactgcaa
     6361 ggataatgac catgatcata aagcaggcca ccagcgctat caccccggcg gttggcccca
     6421 tctcttcttt gaccagctca cccagcgatc gaccgtcacg gcgcgtagaa acaaacagca
     6481 ccatgaaatc ctgcaccgca ccggcgagaa ccaccccggc gagtagccag atcatccccg
     6541 gcaggtagcc catttgcgct gccagcaccg gcccaaccaa cggacctgct ccggcgatgg
     6601 ccgcaaaatg gtgaccgaac agcactttct tgtccgtcgg cacatagtcc agcccgtcgt
     6661 tatggcgcac cgctggcgtc atacgcttcg ggtcaaccgc cagcacattt ttggcgatat
     6721 acaacccata aaaacggtaa gcgatcagat agatacagac cgacgccacc acaatccaca
     6781 gcgcgttgat ctgttcccca cgatttaaag caatgtatcc cagagcaaat gctcccatta
     6841 cagagagcac tgtccagacg aggtatttcc ctgatttgtt catagttgtt atccgtgtgc
     6901 gtgtccatag agatgttaca ttttgtttct ataacatctt tgtacgattt aacaacacgg
     6961 taactatgta aatcggagtt gaaaccaata tttaacttaa caatgttaac tcgatcactc
     7021 cgttaaccga gttttcctgc aatctcattt aattctgtcg ggctcatccc aaaactgccg
     7081 tacccagccg acaagtgcag caacgccgcc cctgttcatc gaaaacgacg atttcccagc
     7141 tctgattttg ccgcccaaga tgcagcggct ggcagacgcc gcgtaccttg ccttcagaca
     7201 ccgggcgatg atgggtggcg ttaagttccg tgcccaccac acactgcccg tcacgggtca
     7261 tcataaatcc ggccatcgat cccagcgttt cagccagcgc cgccgacgcg ccgccatgca
     7321 gcaggccaaa cggctgatga gtacgggtat caaccggcat ttcggcttcc agcacatcat
     7381 ctcccagacg ggtatacaca attcccagat gcgccaccat tgtgttatcg ctggtggcgt
     7441 tcagttcgtc gagcgttaaa tggcgtttcc agatcatgct tatgccccca gcgttgagcc
     7501 gccatcgacc acaatatcct gtagggtgat atggctggcg aggtcagagg cgaggaacaa
     7561 aatcgtgttg gcgatctctt gtggacgggc gattttcccc agcggaatgc cgagtttaaa
     7621 ctgctcgcca aagccgcgaa tacgctgttc ttcggcgtca tcgctcaccc acagcgtgcg
     7681 ttgcatatcg gtgtcggtgg agccaggcga aaccacatta cagcgcacgc cgctacccgc
     7741 cagttccagc ccgacgctca acgccaggct tttcagcgcc gctttcgatg cgccataagc
     7801 actcatacca atacgcggcg tgtgtgcggc gtcggacgcc acagtgacaa tcgccccgcc
     7861 ccgctgacgg cgaaactggt tcatggtttg ctggaacagg ttaaacgcac cgccgacgtt
     7921 aaccgcaaaa gtctgctgcc agtcctcttt actgagctga tcggtcgcgc ccatgcgcaa
     7981 aattcccgcc gcattgatca gcacgtccag tcgctccgtt tcagctaaca gtcgctgaca
     8041 tacctgcgcc acctgcccgg cgtcggcaac atccattact tcggtcgcaa agggatattg
     8101 ctcctgagtg aacgcttgat caaaacctgt aactttcgct cccgcctcaa caaacgccag
     8161 cgccgtggcg tagccgatac ctttacctgc gccggttacc cagacatttt taccgctgaa
     8221 atccattatt taacctcgcg ggagagtagc ttccaccagg cgtcgatggt cgggtttttc
     8281 gccagcatga caaagtcgat atcaccatgc actttgcgcc agcgcgccgc cagcgccatc
     8341 atgcgcaccg aatccagacc gtagtcgatc aggttgtcgt catcgaacgg ttcatcggac
     8401 tcgtccagca acggcaggat aacctcacgc agcgccgctt tgctggcggg gacaggtgct
     8461 ggcagtaatt cttcagtcat caccacccgg ccagaccgcc cggccacata tttcagcgac
     8521 atcaaatgct cgtcacggct gaaatcggcc agcgcatccg ccaccataaa cggtttaata
     8581 tcgcgcataa atgcgtcggt tgcggtggtc atacagccaa tgtgggcata taccccggta
     8641 ataatcagct ggttacgtcc actctctttg agcatttgct ccagcggaga acgatgaaac
     8701 gcgctgtagc gccacttcac cagcaccgtg tcgtcggcat ctggcgtcag gcgatccacc
     8761 accttttgct gttccggcga acgggtcagg cccggccccc acatatcatt caacagcgcc
     8821 cgatcttcat cgctctgctc tttcggctgg gcggtgtaat aaactgggat attgtgctgt
     8881 ttgcagtagt cgcgcagcgc agcaatattc gcgatcacct gctccatcat cgggcagttc
     8941 tcgccccaga agctgacaaa atagtcctgc atatcatgga ttaacaacgc ggcacgttgc
     9001 agttcaaagg cccagtcaac tttattctgc ggaatatcgt gagactccgg cagtgcgtaa
     9061 gcctgtaatt ttggaatagc catcgtgttc tctccttcag gctgatgcgc gtgacgccag
     9121 ccactgactt aattgttttt tatcgacttt cccgaccgcc gtcagcggaa gtgaatctac
     9181 acactccacg cgatccggta atttaaattc ggcaataccc tgttcacgca ggaaacgacg
     9241 cacctgcacc gcgcgcagcg gctcttttac caccagataa gcacagcttt tttcgcccat
     9301 cagctcatct tccatgctca ccagtgcggc atagatcacc gccggatggc gcagcagcag
     9361 gttttcgatc tcttcggcag cgatcttctc gccgccacgg ttgatctgat ctttctcgcg
     9421 cccctgcacg gtgatgtaac cctctggatc aatagagatc agatcgccgg aacagtaaaa
     9481 accgttggca tcaaaggcgc tggcattgtg ctgcggactt ttgtaataac cgcggaaggt
     9541 gtacggcccg cgcgtcatca ggcgtccgac ttccccttgc ggcagtggat ttccttcggc
     9601 atcggcaacc cacacttcat cgtccggaca cattgggtaa ccctgggtat ggataatttt
     9661 ctccgcgcta tcatcaagac gggtgtagtt caccagccct tccgccatgc caaacacctg
     9721 ctgcaactgg cagccaatct cagcgggaat acgcgccgca agggtggcag aaagacgtgc
     9781 gccgccgacc tgtaacagtt tcagcgaggc aagctgcgcc cggctttcgc cttcagccag
     9841 cgcctgcaac cacaggctga ctgccggcgg caccagcgcg gtgacgttca cctgatgttt
     9901 ttcaatcaat gggaagcaaa gcgtagcgct gggatcggcc gccagaacaa ccgttcctcc
     9961 ggcaagaaag acgcccagcg atcctggcga actcatggcg tagttatgag ccgccgggat
    10021 cgcgcacagg tagcgcgtct gttgtgtgaa ctgacaaatc tcgacgctac gacgcacgct
    10081 gtagtagtag tcgttatgag tgcgcgggat cagcttcggt gtaccggtgg tgccgccgga
    10141 aagctggaaa taggccactt catcagcagg tgatggcgtg gcagtaaaac cgtctgccgg
    10201 atggttaatc gcatcctgca agttatgctc accgctgtcg ttgtgcagtt gcaccacgcg
    10261 aatggaggaa tgttctgtga cgaaagtatt gaggaaatca tccccgctaa acagcgcatg
    10321 ttggcgatcg gcaatcagca atgcgggttc aatctggctg gcataggcgt tcagttcact
    10381 acgctgatgg ctgaacaacg ccagcaccgg cgcaacgccc agtttcagca gcgcgaaaaa
    10441 ggtaatatac aattcagcga cgttacccag ttgtaccagc gcggtttcac caggtttaat
    10501 gccctgacgg cgtaaagtac acgcgaggtt atccgccgcc tgattcagct cccggtaact
    10561 caactgtagc tcgccgtcga taaccgcgat gctgtcactc gcagcgtggc gagtcagaat
    10621 gtcggtcagc ggcaaatcct gccagtagcc tttttcccga tagcgacggg caaactcttc
    10681 cggccagcgg gtgaatggaa tgctcatcct cgctccttaa tgcaatccaa aaacattcaa
    10741 catggtagaa agtttgacgc ctgtttcgcg ccactcaccc aacggtgacg acgcaagcac
    10801 aatccccgct ccggcaaaca gacgcacctg attttcccgc agcttcgcgc agcggatggt
    10861 caccacccat tcgccgttac cttcgctgtc acaccaaccc acaatgccgc caaacagttc
    10921 gcggtcgaac ggctccagtt cagcaataac ctgagtcgcg gcctgatgcg ggaaaccgct
    10981 cagcgcgggg gtcggatgca gcagacaggc cagagtcagt gcgttttctt gcgaattcgc
    11041 tttaccttca aagggagttg cgagatgcca cagcgtcggc gtggtaatca attgtggaga
    11101 ggagggaacg tgtaactcac tactgcgttc gcgcagtacc tctttcatcg cctgagtcac
    11161 cagttcatgt tcatggcgat ctttttctga cgccagcaga cgattacccg cttcgcgatc
    11221 gagcacttca tccggctgac gacgcgcgga accggctaac ggaatggagc taaaacgctc
    11281 gccgtcttta cgtagcagca gttccgggct ggcccccagc aggacgccac catcagccag
    11341 cgggacatgg aagttgtaac taaccgggtt ttgcgcaatc aaccgttcca gcaatacgcc
    11401 actatcaatg gcggcgtcag tggtgatatc aatcaaccgt gacaacacca ctttgtcaac
    11461 ctgcggcgtg gcggtaagtg cggcagcgcg ggcaaccatc tgttcaaacg tggtttgttc
    11521 cggaattgcc tggcgttcca ccacattcag cgactggctg cgggtgaaac ggcgggcgga
    11581 agcttgtttt tcctgacggg agaacgactg ccaggattca ggaatataca gcgacgaagg
    11641 ctgacgtgga tcgaagggaa tcgccccgac catcaccgga tttttgatgc cctgcacttt
    11701 ggcatcggca aacagcgcgg cgagtttttg ctggaaggga ctgtcgggcg aatccccgtt
    11761 cacagccggt tcatcgaagc gggcgaaaca tcctgacgtc gtaaaactgc ggtacggcga
    11821 cataaagaaa aagcgattgg gcgcaagtgt tgccatggtc tgctgtactt cctcagccag
    11881 tgacgtatcc atatcatcct ccacaaaatg ataaaggctt taataatgat tatcatttat
    11941 attttcggtc gctaacctaa aagcaaacgc gcactatgtc aactcttgag gtaacgcaat
    12001 ctgcaactcg gggttgcatc tggttgtggt tacaatgaaa atgagaagca ttattgatgg
    12061 attcgcataa gcgcaatgtg atgtcctgcg ccgttcttcc ccctctccct tccagggaga
    12121 gggctggggt gagggtcaat attcgcacca gtgctggctg ctcccatcac cctaaccctc
    12181 tccccaaagg ggcgagggta cggatagtgc gctttgtcga atttgtcatt acgcccttaa
    12241 ccttattaat aacaggaagc tgatttgtga gactcgcccc gctctaccgc aacgcccttc
    12301 tattaacagg acttttgctt tccggaatag ccgcagttca ggccgccgac tggccgcgtc
    12361 agattactga cagccggggc actcataccc tggaaagcca gccgcagcgt attgtttcca
    12421 ccagcgtcac cctgaccggc tcactgctgg cgattgatgc tccggtgatt gccagcggcg
    12481 cgaccacgcc aaataaccgc gtcgcggatg accagggctt tttacgccag tggagcaagg
    12541 tggcgaaaga acgcaaacta caacggctct atatcggcga accgagcgcc gaagccgttg
    12601 ccgcgcaaat gccggatctg attttaatta gcgcaaccgg cggggattcg gcgctggcgc
    12661 tgtatgatca gctttccacc atcgccccga cattaatcat caattacgac gacaaaagct
    12721 ggcagtcgct gttaacgcag cttggcgaaa ttaccgggca tgagaaacaa gcggcagagc
    12781 ggattgcaca gtttgataag caactggcag cggcgaaaga gcaaatcaaa ttaccgccgc
    12841 agccggtcac tgctattgtc tataccgccg ctgcacacag tgccaatctc tggacgccgg
    12901 aatcagcaca agggcagatg ctggaacaac tcggctttac gctggcgaaa ttgcccacag
    12961 ggttaaacgc cagccaaagc cagggcaaac gccatgacat cattcagctt agtggagaaa
    13021 atctggctgc agggttaaat ggcgagtcac tattcctgtt cgccggtgat cagaaagacg
    13081 ccgatgcgat ttatgccaat ccactgctcg cgcacctgcc cgcagtacaa aacaagcagg
    13141 tttatgcgct gggaaccgag acgttccgcc tggattacta cagcgccatg caagtgctgg
    13201 aacgacttaa ggcgctgttt taagcattaa ctgtcggacg ctgtcacctg cggcggcgtc
    13261 tggcgaaaac gtcgcaactc caccagcacc agcaataaca acacgccgat aatcaacaaa
    13321 ccaaaaccgc tcgcgcttgc ggaagcaacc ggtgtcatca tcgctcccag accgcctaac
    13381 agcgccgcgc ctatggcatc gcccgtcacg ttttgtgccg tccacaaacc gttgattcgc
    13441 cctaacattg cttccggcgt ttgcgtttgc agcattgtat attgcagcaa cgaactgacc
    13501 gcactcagcc agccgaacag cgccagacaa accacgccta aaatccacat cggcatcagg
    13561 ccaaataaac caatggcgag gaacgatccc aacgtggaga gcaacatcaa caatcctggt
    13621 cgcgcgctat gcgccagttt cccactggtt aatgcgccaa tagccgcacc gagcgggatc
    13681 gccgcataga gaaaaccaat ctctgccgcc gacatctgcc agttgtcagc cagcgccgga
    13741 tacagtaccc gcaccgcgct cgccatcgtc aataaaccac ccagcaacgc aatcccgccc
    13801 accagcgggc tggcgagcag aaaacgaaat cctgccagta atgatttcaa cggatgctcg
    13861 cgcggctgcg gtggcggtgg caacgccgga aggcttaaca acggtagcaa ggtaataaac
    13921 gtgcccgccg ccgccagccc gtagttccag gctacgccac cggtcgccag caataaaccg
    13981 ccaatcatgg gcgaaatcac cgaccccaga cgcacggtca acatggtgat cgccccggcc
    14041 tgcattaagt tttcacgccc taccagtgct ggtgtcgccg ccaatagcgc cgtaacgcca
    14101 agcgatgcga aaaaaccatc ccataaacca agtaaataga ttgccagcaa tgacggctcc
    14161 ggcagcagtg cattaaggca cagtccaatg aagccaatgc cacaggtgcc gcgcgccagc
    14221 aaaatcactt ttttgcgctc atagcgatcc gccagcacac cgccaaccat caggccaaca
    14281 aacatcgcgc cgccggtcag cgtcaccgaa agccccacca gccaggtaga atgcgtcatc
    14341 atctggatct gcaccggcac cgcgacgccg agcaaaccca gagacacaat tgagataaaa
    14401 cgagcgagga atactgcgcg aaacgccggg tgcgttttca acaggctgag gttaagcagc
    14461 caggattgtt tattcattac aatgccttgc catcaaatat tttaaatacc tattcttagg
    14521 ctgcacatgc taacatatcc aaataagatc gataacgata attaatttca ttatcatgga
    14581 agttcgtatg tctggttctg ttgccgtgac acgcgccatt gccgtgcccg gattgctgtt
    14641 attactgatt atcgcgacgg cattaagcct gctcattggg gcaaaatcac tccccgcttc
    14701 cgtagtgctg gaggccttct ccggcacctg ccagagcgcc gactgcacca tcgtgctcga
    14761 cgcgcgactg ccgcgcaccc ttgccggttt actggcaggc ggcgcgcttg gccttgccgg
    14821 ggcgttgatg caaaccctca cccgaaatcc acttgccgac cccggcttgc ttggcgtgaa
    14881 cgccggagcc agctttgcca ttgtgctggg tgcggcgctg tttggttact catccgcgca
    14941 ggaacaactg gcgatggcct tcgccggggc gctggtggcc tcattgattg ttgcctttac
    15001 cggcagtcag ggcggcgggc agttaagtcc ggtgcgttta accctggcgg gcgtggcgct
    15061 ggcggcagtg ctggaagggc tgaccagcgg catcgccctg cttaatcctg acgtctacga
    15121 tcaactgcgt ttctggcaag ccggttcgct ggatattcgc aatctacata ccttaaaagt
    15181 ggtgctgatc ccggtgctga tcgccggagc aaccgcgcta ttactgagcc gcgcgctgaa
    15241 cagtttaagc ctcggcagcg acaccgcgac ggcgctgggc agtcgcgtgg cgcgcacaca
    15301 gttaattggt ctgctggcga ttaccgtgct ttgtggtagt gcgacagcgg tagttggccc
    15361 gattgccttt attggcctga tgatgccgca tatggcgcgt tggctggtgg gtgccgatca
    15421 tcgctggtcg ctgcccgtaa cgctgcttgc tacccctgcc ctgctgctgt ttgccgatat
    15481 catcgggcgg gtgattgtgc ccggtgaact gcgcgtttct gtggtcagtg cctttattgg
    15541 tgcaccggtg ctgatcttcc tcgtgcgacg taaaacgcga ggtggtgcat gatttacgtc
    15601 tctcgccgat tactcatcac ctgtttgctg cttatttccg cctgtgtggt tgcaggtatc
    15661 tggggattac gcagcggtgc cgtcacgctg gaaacctcgc aggtattcgc cgcgctgatg
    15721 ggcgatgcgc cgcgcagtat gacgatggtg gtcaccgaat ggcgtttacc acgcgtgctg
    15781 atggcgctgt tgattggcgc ggcactgggc gtcagcggtg cgatttttca gtcgctgatg
    15841 cgtaacccgc tcggcagccc tgacgtaatg ggctttaaca ccggggcgtg gagcggcgtg
    15901 ctggtggcga tggtgctgtt tggtcaggac ctgacggcta tcgcgctggc agcaatggtg
    15961 ggcggcattg tcacttctct gttggtctgg ctgctcgcct ggcgtaacgg tatcgacacc
    16021 tttcggttga ttattatcgg catcggcgtt cgcgccatgc tggtggcctt taatacttgg
    16081 ctgttgctga aagcgtcttt agaaacggcg ctaacagcgg gtttgtggaa tgccggatcg
    16141 ctcaatggcc tgacgtgggc aaaaacttcg ccttccgcac ccatcattat attgatgctc
    16201 attgccgccg ccttgctggt gcggcgaatg cgcttgctgg agatgggcga tgataccgcc
    16261 tgcgcgctgg gcgtcagcgt cgagcgttcg cgtctgttaa tgatgctggt tgcagtggtg
    16321 cttaccgctg cggcaacggc gcttgccggg ccgatttcct ttattgcttt agtcgcgccg
    16381 cacattgccc gacgcattag cggcaccgct cgctgggggc tgacccaggc ggcgctgtgc
    16441 ggagcgctgt tactgctggc ggccgatctc tgcgcccaac aactgtttat gccgtatcaa
    16501 cttccggttg gcgtcgttac cgtcagcctc ggcggtattt accttatcgt cttgttaatt
    16561 caggagtctc gcaaaaaatg accgaatcag tagcccgttt gcgcggcgaa cagttaaccc
    16621 tgggatatgg caaatatacc gttgcggaaa atctgactgt agaaattcct gatggtcact
    16681 tcacggcaat tatcggacca aatggctgtg gtaaatccac gttactgcgt accttaagcc
    16741 gcctgatgac gcctgctcac gggcatgtct ggctggatgg cgagcacatt aaacattacg
    16801 ccagtaaaga agttgcacgc cggattggtc tgttggcgca aaatgctacc acgccgggcg
    16861 atatcaccgt gcaggagctg gtggcgcgtg gacgttatcc gcatcaaccg ctgtttaccc
    16921 actggcgcaa agaggatgaa gaagcggtaa cgaaagcgat gcaggccacg ggaataactc
    16981 atctggcaga tcaaagcgtg gatacccttt ctggcggaca acgccagcga gcgtggatcg
    17041 cgatggtgct ggcccaggaa acggcaatta tgctgctcga cgaacccacg acctggctgg
    17101 atatcagtca tcagattgat ctactggaac tgttaagcga actgaaccgc gagaaaggct
    17161 ataccctggc ggcggtgctg cacgatctta atcaggcctg tcgttacgcc agccatttga
    17221 ttgcattgcg ggaagggaaa attgttgctc agggagcgcc gaaggagatt gtcactgctg
    17281 aactgattga gcgcatttat ggtctgcgat gcatgatcat tgacgatccg gtagccggaa
    17341 cgccgcttgt ggtgccgctc gaacgaacgg caccttcaac cgcaaatagt taaactaagt
    17401 ggtctgccat catggcatcc tgttttctgg atgccatcgc atagcgcaat aacacgctac
    17461 cacaagccac catcccgccg atcagcgcgg aaaggatcac aataatcgcc ttacccggac
    17521 cgtctttttt cactggcaat gacgggctta actgatattt aaacggcgta aaattcacat
    17581 cgttgacatt tgcttttgtt aattgctcga caagatactg ccgattacgt aattcaccgt
    17641 tcagttccgc aacgtcagta accgcttttt caatttccag tttgcgttca ataccgtctg
    17701 cgccgagaga aatagagaaa tcggggtcat ctttaacggc ctgaccatta ctgtatacgg
    17761 gctttttaat tcctgccgcg ttggcaatgt cgagtgaata attgaggcgc tgaatgtttg
    17821 catcaagttg atttttcgtt ttaatgcgat cctgagccag tttttctttt tcaaactggg
    17881 ttttgatctc cagtttatta cggacgtttt ctatcgactc tttcaccacc aacgcagaga
    17941 tataatcgat atacccgctc aaaacggtct gcgcctcttt actggttggc gcggtaaaac
    18001 ttagcgtcca ggaggtatac agtgacggtt catctttttt cttactggca ttgtcatcaa
    18061 ccgctttcat tttttcgctc aatgcaacaa tagcgcgatg caaatccagt tcatcgattt
    18121 tcgcctcttt taattggtcc atcacataag gtgatgaacg caggtactct tccagcaagc
    18181 taacagactg aaacttcttg ataaacaggt taaatgcacc gccacggtcg atattaacat
    18241 cgagatcaag aacgcggagt ttggtaaagg ttttctccag gtcctgccac tgaatggctt
    18301 cggcgggagt aataacggct gagctggtcc atttttgcgg caggatgaaa gagatcagta
    18361 aacctgcgca ggcaaatgca aaaacgaccg ccatgaccgt ttttttggcc cgccataaaa
    18421 cttcgattag attaagtaaa tcaatttcat tactactggg cgacgccaga ggatactcgg
    18481 aaaaatgagc gtcacttccc tgtttaatat tcagtgatga catgggtata acctgaaaat
    18541 gagtccaata gggggaaatc tccacggcgc tcactttacc agttggtgag aattatccga
    18601 agctgaagtt tgtaaattcc ttccactgaa tgcaacattc actctattta agagaaatat
    18661 tcatcaaacc tataaatcaa acaaataaaa aacccataat tattttctgt aattatgggt
    18721 ttatagataa tattaattta cctgtttagc gttgcgcgaa taatcggccc aatttttaca
    18781 aacgcccctg gagagataat atccacatgc gcacaatcct gacgatagat atccagctcg
    18841 gcaatccagg gcgaccaagc gcgttcgggg ctcatacctt cctgaagcgt gcgttcagca
    18901 acaaacagcg tcgctttacc atcaaacggt acgctatgag cagtcgtcag cagacgcaca
    18961 gcatcagcgt agttgccttc aatggtggta aacaactccg ttgaagtact tccctgctgt
    19021 gccgccagga aggcctcgcg ttcgcggtta atctccgcca gcacttccgg gtccagacca
    19081 ttagcctctt tttcctgcca gttttgcgtt tctggcggcc aggtatccag caaaccaaga
    19141 aatgccacct gttcgccacg ggcacgcagt cgcgccgcaa tgccctgcgc cagcgtaccg
    19201 ccaagggaat accccagcag gtaataaggg ccgtgcggtt gttgttcaag taacgttgcc
    19261 agatgcgctt cacagacttc atccagattt gccgcggtat gcatggggcc attggggcgc
    19321 ggcgactgaa tgccgataat cgaccattgt ggatcgatat aacgcgagag cacgctaaac
    19381 tgccaggcaa aaccggatgc cggatggaaa caaaacagcg tcgggccatt accttcacgc
    19441 aacggcagaa tggtttcgaa tcccatacgc cgggtgctgt cttcttcagc atcaataatc
    19501 gttgccagtt tagcgacggt tgacgcgacc atcacttgcc ccggcgtcac ctggcgggca
    19561 acctgccgac ttaactgcgc tgccagtttc attgccagta gcgaatgacc accaagcgca
    19621 aagaaatcag catcggcatc ctgcacgtca caacccagca acgacgcgaa tgccgcggca
    19681 ataatcgttt cactgcccgc ttttggcgca cgccccggcg cttgtgcctt cagttcaggc
    19741 aacggtaagg ctttgcgatc cagcttgccg ttggcgctaa gaggtaacag tggaagttgc
    19801 agcagaacca cgggcaccat atgtggtggc aatgtttcgc gaagctgcgc ctgtaatgcg
    19861 ctggtatcca acggcagacc tgattgcgac accagatagc ccaccaactg acgcgcatca
    19921 ccaccggtgg ctgccgcctg gttaatcaca caggcgtggg taacggcttg ttcgacatcc
    19981 ggcagcgcct gcatcacgcg atcgatttcg cccagttcaa tacgctgccc gcgaattttt
    20041 agctgatcgt cactgcgccc gaggtactcc accgcgccgt tatccagcca gcgggcaacg
    20101 tctccggtac ggtacatccg ttcaccaggg acaaaaggat cggcaataaa gcggctggcg
    20161 gtcagatcgg gtcgtccaag atacccctgc gccagttgaa tgccggtgag atagagatca
    20221 cccgccacac ccggcggcac cggatgcatc atcgcatcaa gaatacgcag acccgtattc
    20281 cataccggat aaccaatcgg cacactgctg ccgcgcacct gtgccagttc ctcgccaaaa
    20341 gccggatacc agctgacatc taccgccgct tccgtcgggc catatagatt atgcaacggc
    20401 acgctggtta actgttgcca ttcgcggcat aaatcagccg gtaaggcctc accactacag
    20461 aaaacctgtt tcaacgtcgc gcaactctgg cgagcggttt gcggcgtcag cgatgcaaca
    20521 aatgctgcca gcatcgacgg cacaaagtgc gtggtcgtta cgccatattc ggcaaagaat
    20581 tgctgcatag cgagcgggtc gcggtgcgct tccggttcag ccatcaccag tttagccccg
    20641 gcaataaacg gccagaaaaa ctcccacacc gagacatcaa aactgcacgg cgttttttgg
    20701 gcaacgacat cttcgcctgt aagcagataa tgattttgca tccacaacag gcggttaacg
    20761 atagccgtct gcccgaccat tacccctttc ggcctgccgg tggagccaga ggtaaagatg
    20821 atataagccg tgtgatgcgg ttgtgaaagt tgcagcggcg cactgccctg cggtttaagc
    20881 ggggcgttat agcaaaggtt ggttaaatct ggaacatcgg caaagcgcgg cagttgatcg
    20941 tcggtggtga ttaacagcga cggacgcgca tcttccagca tcattttcag gcgatcgtcc
    21001 ggatagccgg tatccagcgg tagccaggcc gcgccagctt caactatcgc atgtagcgcc
    21061 agggtcaaaa agaccgagcg cggtagcgcc accgccacgc tgtcgcccgg tttaacgcca
    21121 cgctcacgca gcagattcgc cagcgccacc acctgctcgc gcatttcccg atagctgaac
    21181 tggtaacgcg catctgccag cgccggagca tccggtgttt ttgccgcttg ttctgccacc
    21241 agcgcgctca gcgtggtttc tggaatctca acctgagtgg cgttgatctg cgccagctgc
    21301 gcatactcac ctggcagcat aatatcgaca tcgccgcaca acagcgccgg atccgcggcg
    21361 aactgggcaa tcagcatttt caggcgttca gcatgctgga ttaacgttgg ctcatcgtaa
    21421 cgctgtttat tggcgaggat ctcaatactc aaatcaccgt gttcatccgg gaacagggcc
    21481 agttcaaggt cattaaccgg accggttgcc aaggtatggg tttgcgcctg aacaccagga
    21541 atatccagtt ggtaatcaaa taccttgata ttgagtaccg gaccaaacag cggttcatca
    21601 cctgccgctc gcccgctgtc acggacaatt tgttcggcat cgtaacgttg atgacgacgc
    21661 atttttttca gttgtgctgc cagtcgggtt gccagttccg gcagcgtttc ttgcgccgca
    21721 atgtgaatac ccaacggcaa aacgttgagc acgggtccgg tagccgtcag cgccgccgag
    21781 cccagtcgac gcataaagat aaatccagcg gcgtagtcca tgcgattgca caatcgcccc
    21841 agccacaaag ccgtcagcgc aagggctaaa tcggtacgct gcacacctga aagttgcgta
    21901 gccaactggc ggaattcccc gtcggtaaat tccattttca gacgtaaaat atctgccgaa
    21961 gcgctgcgcc ccggtaaagg tgccggagaa agtgacgcgg gcggcggcag ttgacgacgc
    22021 tgttctgccc agaatgccgc atcacgctgc caggcttcgc tttcgcggta ttgctggtac
    22081 tcttccacta catcagcgaa aggcgtaaac ggcgaagcag gcgttggttc accacgcagc
    22141 catgtgcagt aaatattggc gatctggcgg gtaatggccg ggaaactgaa gccatcgacc
    22201 agcaaatggt gataacgctg ataccagtac cagcggttat ccgccacctg tatcagctga
    22261 tgaaagacca gtggtttacc gctatcgacg cgcagatctt gttgcaaatc cgcctgcatt
    22321 aatgcctgcg cagtaccgtg cggatcaatg ttggttcgca ggtcgataat ttctggcagt
    22381 tcgaacgtca gcgcatcatc gacccactgc cagacttcgc cgttatcttc cgtaaaacgc
    22441 atccgcagcg tatctgcttg cgctagtccg tcaaccaccg cgcgggccag taatggcgca
    22501 tcaacctctc cggttaactc aacgtaatgc gctacgctcc aggcggaggg taaatccgac
    22561 agtttttctg ccatccagat gccgggctgt gcggcgacca aaggtaaatg ctggctcatt
    22621 gcgcctcctg caactgggtg aaattcgccg gtgtcagagt acgccagtgg gcttcaagcc
    22681 actgctggca ggactcttgt gactgcggct gacacacaat gtcccagcct gccggtaagg
    22741 cgcattgttg cggccacaga ctgaattgcc cctgcgcatt gcgcaaaatg taaaacgctc
    22801 cctgtggatc atcgaaggga ttactgaatg ccatattcaa ctcctgtcat ggaaaagtgg
    22861 ttgccagagg tcgattagcc cctgcatcaa gccaccgcgc caacaaagcg catcatgtcc
    22921 gccgtcaacc tggcgccaga aaatggattc ttttatgggg tgtaattgcg catacagcgc
    22981 ctgattggcc cgcataatca tcggctcgcg aatacccgct tccagcacaa tgcgcagacc
    23041 ttcggcgcta acttcaccag ctttaagctt ttcaagtaac acgccctctt gctgcccgcc
    23101 ccgatgcggc caccagtacg atcctgactg gcttaataca caaccaaaac gttcaggcca
    23161 gtgcagtccg gcatacagcg cggaaagtcc accaaaactc tgcccggcaa ccacggtgcg
    23221 atcggcgcga tcgctaaaag gggcaatagc tttcaccaag ggtaataact cttgctgtac
    23281 tgcgagccag aaatccgcat tacacggcag ttcgtgagcg cggtgcgtgg tgtcgatagc
    23341 gtcgatcaac acatacacgg cgggaggaag ttgctgacga tgggtcagcg aagtcagcac
    23401 tggccagacg ggcatacttt gcgcccaaaa ttcgccatcg agcaaaactg ccagcgggcg
    23461 ttcttctgct gttgcatcgc cggtggtaaa aatccataca cgacgtgaat ttttcaaccg
    23521 ttcacttttc cagataattt ctttggctgg tatttctggc gcttgcggac aatcccatcc
    23581 cggttgcaga ggcgcttgcg gcatttcgag tgcagaaaca gcgtgccctc gcccgccttt
    23641 ccagctttgt ggattcagcg gatcggctat tgcctggggt aatagttttc gccagccttc
    23701 acgtaattcg aggcgatcgg gggatggtgc agaaaaaatg tcatcgcgtt cggtgggaat
    23761 aaagcagtag ctgccgcgcc agttggcatt gagttgtgtc gtccactgcc agacatcagt
    23821 acctgcaatg cgctgcatcg actggggctg gctgttctga tgatgatcgg tcacaccagt
    23881 gatgtagacc catacgcgct ttatcggcga gtattcttca gaaccttggg gatcacgcca
    23941 ccagaaagtg acctcaaaca tttcgtcatt cagacgctgc cattccgggc catgtttcga
    24001 ctgccaccag ctctcacttc ctacttttaa cgccgtcaca ccataacccc atgtttactg
    24061 tgcaattttt cattgattgc agaaatatat tgataatatt attgataact atttgcattt
    24121 gcaatagcgt aatggcgcgc cgtgggaagc gcggacatta attaaccaac tgcactgcgt
    24181 gtctttcagg atcaaaggtt ttcgcggtag cgggatgcgt cgtgttgagg acgaccatgc
    24241 ccgacagttg caattcgtgg caaaaatgca ggaataaaac aatgaacaag aagattcatt
    24301 ccctggcctt gttggtcaat ctggggattt atggggtagc gcaggcacaa gagccgaccg
    24361 atactcctgt ttcacatgac gataccattg tcgttaccgc cgccgagcag aacttgcagg
    24421 cacctggcgt ttcgaccatc accgcagatg aaatccgcaa aaacccggtt gcccgcgatg
    24481 tgtcggagat catccgtacc atgccaggcg ttaacctgac cggtaactcc accagtggtc
    24541 agcgtgggaa taaccgacag attgatattc gcggtatggg tccggaaaac acgctgattt
    24601 taattgacgg caaaccggtc agcagccgta actcggtgcg tcagggctgg cgtggcgagc
    24661 gcgatacccg tggtgatact tcctgggtgc cgcctgaaat gattgaacgt attgaagttc
    24721 tgcgtggtcc ggctgcagcg cgttatggca acggcgcggc gggtggcgta gttaacatca
    24781 ttaccaaaaa aggcagcggt gagtggcacg gttcctggga cgcttatttc aatgcgccag
    24841 aacataaaga ggaaggtgcc actaaacgca ccaacttcag tctgaccggc ccgctgggcg
    24901 acgaattcag cttccgcttg tatggcaacc tcgacaaaac ccaggctgac gcgtgggata
    24961 tcaaccaggg ccatcagtcc gcgcgtgccg gaacgtatgc cacgacgtta ccagccgggc
    25021 gcgaaggggt gatcaacaaa gatattaatg gcgtggtgcg ctgggacttc gcgcctctgc
    25081 aatcactcga actggaagcg ggttacagcc gccagggtaa cctgtatgcg ggcgataccc
    25141 agaacaccaa ctctgacgct tacactcgct cgaaatatgg cgatgaaacc aaccgcctgt
    25201 atcgccagaa ctactcgctg acctggaacg gtggctggga taacggagtg accaccagca
    25261 actgggtgca gtatgaacac acccgtaact cgcgtattcc ggaaggtctg gcgggcggta
    25321 ccgaagggaa atttaacgaa aaagcgacac aggatttcgt cgatatcgat cttgatgacg
    25381 tgatgctgca cagcgaagtt aacctgccga ttgatttcct cgttaaccaa acgctgacgc
    25441 tgggtacgga gtggaatcag caacggatga aggacttgag ttccaatacc caggcgctga
    25501 ccggggcgaa caccggcggc gctattgatg gtgtgagtgc caccgaccgt agcccgtatt
    25561 caaaagcaga aattttctcg ctatttgccg aaaacaacat ggagctgact gacagcacca
    25621 tcgtaacgcc ggggctgcgt ttcgatcatc acagtattgt cggcaataac tggagcccgg
    25681 cgctgaacat atcgcaaggt ttaggcgatg acttcacgct gaaaatgggc attgcccgcg
    25741 cctataaagc gccgagcctg taccagacta acccgaacta cattctctac agtaaaggtc
    25801 agggctgcta tgccagcgcg ggcggctgct atctgcaagg taacgatgac ctgaaagcag
    25861 aaaccagcat caacaaagag attggtctgg agttcaaacg cgacggctgg ctggcgggcg
    25921 tcacctggtt ccgtaacgat tatcgcaata agattgaagc gggctatgtg gctgtagggc
    25981 aaaacgcagt cggcaccgat ctctatcagt gggataacgt gccgaaagca gtggttgaag
    26041 gtctggaagg atcgttaaac gtaccagtta gcgaaacggt gatgtggacc aataacatca
    26101 cttatatgct gaagagtgaa aacaaaacca cgggcgaccg tttgtcgatc atcccggagt
    26161 acacgttgaa ctcaacgctg agctggcagg cgcgggaaga tttgtcgatg caaacgacct
    26221 tcacctggta cggtaagcag cagccgaaaa aatacaacta caaaggtcag ccagcggttg
    26281 gcccggaaac caaagaaatc agtccttaca gcattgtggg tctgagcgcg accagggatg
    26341 tgacgaagaa tgtcagtctg accggcggcg tggacaacct gttcgacaaa cgtttgtggc
    26401 gtgcgggtaa tgcccagacc acgggcgatc tggcaggggc caactatatc gcgggtgccg
    26461 gggcgtatac ctataacgag ccgggacgta cgtggtacat gagcgtaaac actcacttct
    26521 gatgctaacg tcagattgtt gataaagtgc gcgtcgttca tgccggatgc ggcgtgaacg
    26581 ccttatccgg cctacaaaaa tcttgccaat tcaatatatt gcaggaccat gtaggcctga
    26641 taagcgtagc gcatcaggca gtttagcgtt tgtcaccagt ctctaatatg gtcgacatga
    26701 aaactacgca tacctccctc ccctttgccg gacatacgct gcattttgtt gagttcgatc
    26761 cggcgaattt ttgtgagcag gatttactct ggctgccgca ttacgcgcaa ctacaacacg
    26821 ctggacggaa gcgcaaagcc gaacatttag ccgggcggat cgctgcaatt tatgcgctgc
    26881 gggaatatgg ctataaatgt gtgcccgcaa tcggcgagct acgccaaccg gtgtggcctg
    26941 cggaggtata cggcagtatt agccactgcg gggctacggc attggccgtg gtttcccgtc
    27001 aaccgattgg cgttgatatc gaagaaattt tttctgcgca aacagcgacc gaattgacag
    27061 acaacattat tacaccagca gaacacgagc gactcgcaga ctgcggttta gccttttctc
    27121 tggcgctgac actggcattt tccgccaaag agagcgcatt taaggcaagt gagatccaaa
    27181 ctgatgcagg ttttctggac tatcagataa ttagctggaa taaacagcag gtcatcattc
    27241 atcgtgagaa tgagatgttt gctgtgcact ggcagataaa agaaaaaata gtcataactc
    27301 tgtgccaaca cgattaattg acaacatctg gtacgattcg cccgcagcca tcactgaccg
    27361 cgggcgaaag tgtaaagcag gtgccttacc atcctgacct gacaaccgga tatgcgggga
    27421 ttgctccccg cacaacggct acttcttcgg ttcgtaagcg agaacagcct taaactcaat
    27481 attacgttcc tttacggtga actcacacag cgaatccccg accagaagcg taaatcccag
    27541 caccgttaaa cacagcacta tgactgccgc aagggcatat ttcgtcagca tgtttatatt
    27601 gcctccatgc gaagaaggga ctaccatcca aattgttcag gtttgggtag gtagccccag
    27661 ggttgataga aatatcgtcc tggggcttca tctttccaga cctcagagta aacctgaaac
    27721 cggaaagctt caggcacccg cagttatctt acccttgctt agcaaaatag ctgtttattt
    27781 atacagtaag tcctgtttcg gacttctcac tccccatttg atcaactgaa gctgaacccg
    27841 tttttttctg catgcctcaa tcgtcaaaat tcttcgccac agtcagcact gccataactt
    27901 gtcacattgc aaaagtagcc aaattgcttc tgtcataatc agttcaccat caccaaaaaa
    27961 aagaaacatt ccagaacttc cgcatctcgc ccagccgctc ccacttctat actgaataga
    28021 aaacgccaac ataagagaaa cctatgccat tacccgattt tcatgtttct gaacctttta
    28081 cactcggtat tgaactggaa atgctggtgg ttaatccgcc gggctatgac ttaagccagg
    28141 actcttcaat actgattgac gcggttaaaa ataagatcac ggccggagag gtaaagcacg
    28201 atatcaccga aagtatgctg gagctggcga cggatgtttg ccgtgatatc aaccaggctg
    28261 ccgggcaatt ttcagcgatg cagaaagtcg tattgcaggc agccgcagac catcatctgg
    28321 aaatttgcgg cggtggcaca cacccgtttc agaaatggca gcgacaggag gtatgcgata
    28381 acgagcgcta tcaacgaacg ctggaaaact ttggttatct cattcaacag gtgaccgttt
    28441 ttggtcagca tgttcatgtt ggctgcgcca gtggcgatga cgccatttat ttgctgcacg
    28501 gcctgtcacg gtttgtgccg cacttcatcg ccctttccgc cgcgtcgcca tatatgcaag
    28561 gaacggatac gcgttttgcc tcctcacgac cgaatatttt ttccgccttt cctgataatg
    28621 gcccgatgcc gtgggtcagt aactggcaac aatttgaagc cctgtttcgc tgtctgagtt
    28681 acaccacgat gatcgacagc attaaagatc tgcactggga tattcgcccc agtcctcatt
    28741 ttggcacggt ggaggttcgg gtgatggata ccccgttaac ccttagccac gcggtaaata
    28801 tggcgggatt aattcaggct accgcccact ggttactgac agaacgcccg ttcaaacatc
    28861 aggagaaaga ttacctgctg tataaattca accgtttcca ggcctgtcgc tatgggctgg
    28921 aaggcgtcat taccgatccg cacactggcg atcgtcgacc gctaacggaa gacaccttgc
    28981 gattgctgga aaaaatcgcc ccttccgcac ataaaattgg tgcatcgagc gcgattgagg
    29041 ccctgcatcg ccaggtcgtc agcggtctga atgaagcgca gctgatgcgc gatttcgtcg
    29101 ccgatggtgg ctcgctgatt gggctggtga aaaagcattg tgagatctgg gccggtgact
    29161 aagtagggaa ttgccttaca gaagaatatc cctgacaatg gtgttttaac ttacatttaa
    29221 caatgttatg aaacaccctt tagaaacctt gactaccgca gcaggcattt tgctgatggc
    29281 tttcctctct tgcctgctgc tgcccgcccc cgcactgggg ctgacgctgg cacaaaaact
    29341 ggtgaccatg ttccatctga tggatcttag ccagctttac actttattgt tttgtctgtg
    29401 gtttttagtg ctgggcgcta ttgagtattt tgttctgcgc tttatctggc gacgctggtt
    29461 ctcgctggcg gattaaacgt cgattatcgc cgtacttcgc ggcatacttt gcttattctc
    29521 cttcgcctaa aggaacgttt atggataagc aatcactgca cgaaacggcg aaacgcctgg
    29581 cccttgagtt accctttgtc gagctttgct ggccttttgg cccggagttc gatgttttta
    29641 aaattggcgg caaaattttt atgctgtcgt cggagctgcg cggcgtcccc tttatcaatc
    29701 tgaagtccga tccacaaaaa tccctgttaa atcagcagat atacccgagc attaagccag
    29761 ggtatcacat gaataaaaag cactggattt cggtgtatcc cggcgaggaa atctccgaag
    29821 cgttacttcg cgatctgatc aacgattcgt ggaatctggt ggttgatggt ctggctaaac
    29881 gcgatcaaaa aagagtgcgt ccaggctaaa gcggaaatct atagcgcatt tttctcgctt
    29941 accatttctc gttgaacctt gtaatctgct ggcacgcaaa attactttca catggagtct
    30001 ttatggatat catttctgtc gccttaaagc gtcattccac taaggcattt gatgccagta
    30061 aaaaacttac cccggaacag gccgagcaga tcaaaactct cctgcaatac agcccatcca
    30121 gcaccaactc ccagccgtgg cattttattg ttgccagcac ggaagaaggt aaagcgcgtg
    30181 ttgccaaatc cgctgccggt aattatgtgt tcaacgaacg taaaatactt gatgcctcgc
    30241 acgtcgtggt gttctgtgca aaaaccgcga tggacgatgc ctggctgaag ctggttgttg
    30301 accaggaaga tgctgatggc cgctttgcca cgccggaagc gaaagccgcg aacgataaag
    30361 gtcgcaagtt cttcgctgat atgcaccgta aagatctgca tgatgatgca gagtggatgg
    30421 caaaacaggt ttatctcaac gtcggtaact tcctgctcgg cgtggcggct ctgggtctgg
    30481 acgcggtacc catcgaaggt tttgacgccg ccatcctcga tgcagaattt ggtctgaaag
    30541 agaaaggcta caccagtctg gtggttgttc cggtaggtca tcacagcgtt gaagatttta
    30601 acgctacgct gccgaaatct cgtctgccgc aaaacatcac cttaaccgaa gtgtaattct
    30661 ctcttgccgg gcatctgccc ggctatttcc cctcagattc tcctgatttg cataaccctg
    30721 tttcagccgt catcataggc tgctgttgta taaaggagac gttatgcagg atttaatatc
    30781 ccaggttggg gatttagcgg gtattgagat cgatcacacc acctcgatgg tgatgatttt
    30841 cggtattatt tttctgaccg ccgtcgtggt gcatattatt ttgcattggg tggtactgcg
    30901 gaccttcgaa aaacgtgcca tcgccagttc acggctttgg ttgcaaatca ttacccagaa
    30961 taaactcttc caccgtttag cttttaccct gcaggggatt atcgtcaata ttcaggcggt
    31021 attctggctg caaaaaggca ccgaagcggc agatattctg actacctgcg cgcagttgtg
    31081 gatcatgatg tatgcgctgc tttcagtctt ctcgttgctg gatgttattt tgaatctggc
    31141 gcagaaattc ccggcggcat ctcagttacc gctgaaaggg atatttcagg ggattaaact
    31201 gatcggcgca atcctggtcg gcattttgat gatctcgctg ctgattggtc agtcgccagc
    31261 gattctgatc agcggtcttg gtgcaatggc tgccgtgctg atgttggtat ttaaagatcc
    31321 gattcttggt ctggtggcag gtattcagct ttccgcgaac gatatgctga aactgggcga
    31381 ctggctggag atgccgaaat acggcgcgga tggcacggtg atcgatattg ggttaaccac
    31441 cgtcaaagtg cgtaactggg acaataccat taccactatt cccacctggt ctctggtttc
    31501 tgactccttt aaaaactgga gcgggatgtc agcatctggc gggcgacgta ttaagcgcag
    31561 tatcagtatt gatgtcacca gtattcgttt tcttgatgaa gacgaaatgc aacgtctgaa
    31621 taaagcgcac ttgttaaaac cttatttaac cagccgccat caggaaatta atgagtggaa
    31681 tcgccagcaa ggttctacgg agtcgatatt aaacctgcgc cgaatgacca atattggaac
    31741 ctttcgtgcc tatctgaacg aatatctgcg taaccatccg cggattcgta aagatatgac
    31801 cttaatggta cgccaactgg ctccaggtga taacggttta ccgctcgaga tctacgcgtt
    31861 taccaacacc gtggtgtggc tggaatatga aagcattcag gctgatatat tcgatcacat
    31921 atttgcgatt gtcgaagagt ttggtctgcg acttcatcag tcgccagccg gcaatgatat
    31981 tcgctctctg gcgggtgcat ttaagcagta attaaaaaaa ccgctctcat cgaatggatg
    32041 agagcggaca tcgttttgtc ggatgtagcg tgaatgcctt atttccgacg cagcgtttta
    32101 aatgccacaa acaggaatac aatccacacc ggcagcagga tcgctgacaa gcgcatatca
    32161 tccatcgtgc acatcagcag caaaatcatg ccgaggaagg caatgcaaag atagttgccg
    32221 aacggataaa gcagcgcctt aaactgtgtt tcacgtccct gacgtcgcat cgccgcgcga
    32281 aaacgcagat gcgccaggca gatcataatc cagttcaaca gcagcgttgc taccaccagc
    32341 gccatcagca gaccaaacgc tttttgcggc agcagatagt tgattaacac caccagcgaa
    32401 gtgatcgctc cggaaagcat cagcgagtta atcggcacgc cgcgatggct gacgcgagtc
    32461 aaaaacttcg gcgcattacc ctgcacagaa aggccaaaca gcatgcggct gttagagtaa
    32521 accccgctgt tatacactga cagcgatgct accagaatga cgaagttcag cgcagaagct
    32581 acctcgttgc tgtcgagatt atggaaaatc atcacaaacg ggctactgtt ggatttcact
    32641 tccacccacg gatagagcgc cagtaaaacc accagtgaac agatgtaaaa cagcaggatg
    32701 cgatacacca cctgatttac cgcttttgga atgctttttt ccggatcgcg cgcttcagcg
    32761 gcagtaatcc caatcagctc cagaccgccg aaggagaaca taattaccgc cagcgacaaa
    32821 atcagcccat tccagccggt ggcgaagaaa ccaccgtagc gccagaggtt gtcgatactg
    32881 gctttctcgc cgccgtgacc agaaaacagc agccacaggc caaagccgat cataccgatg
    32941 attgccagca ctttaatcaa cgcaaaccag aactcggttt cgccatataa gcgcacgttc
    33001 accaggttaa cggcgttgat gataataaag aaggcggcag cccaaatcca cgttggaaca
    33061 tccgggaacc agtactgcat atagatgccc gcagcggtca gctctgccat tcccaccagc
    33121 acgaacatta cccagtagtt ccagccagag aggaagcccg caaacggtcc ccagtattta
    33181 taggcaaagt gggcaaatga accggatacc ggctcttcga ccaccatctc gccgagctgg
    33241 cgcataatca ggaaagcgat gatcccggcg acgccgtagc ccagcaatac agccggaccc
    33301 gccatctgaa tcgccgggcc aatgccaaga aacagaccag taccaattgc gccacccagc
    33361 gcaatcagtt gaatatgacg gttatgtaat ccgcgatgaa gcgtcggctc ttgatttgac
    33421 gcagtatctt ccgatacggt tgacgcgttt ttcacgcctt tcccctgtgt gtcttttttg
    33481 ttgaggggca ccttttaaca tttagtgccc atcgtcgcaa gacacaatcc acacggttaa
    33541 acggggtatc ctgcttttat ttccgtaccc gatgtcggtg cagccacatc agcttatacg
    33601 ccgccgggat aataaacagc gacagcaaag gcgcggtgat catgccgcca atcatcggtg
    33661 cggcaatccg gctcatcacc tctgaaccag cccccgttcc ccacagaatc ggcagcagac
    33721 cggcgataat caccgccacc gtcatcgctt tcgggcgcac gcgcagtacc gcgccgtgat
    33781 acaacgcctc atccagcttc tgctcactga atgtttgcgg attattcaac gacggctcgg
    33841 cctctatggc gtgacgtaaa tacatcagca tcaccacgcc aaattcggcg gcgcccccgg
    33901 caagggcaat aaaaccggtg cccgttgcca cagaaagatg aaagcccatc caccacagca
    33961 accagatgcc gcccaccagc gcaaacggta cgctgctgat aatcagcaac gcttcgccca
    34021 cccgacggaa tgccagatac aacagcacga agatgatcat cagtgtcatc ggcaccatga
    34081 gtttcagctt atggttggcg cgctccagta gctcgaactg cccggagaat gccacgctgg
    34141 tgcccggttt taactgcact ttttcaacta tcgctttttg caaatcgtga accaccgaca
    34201 ccatgtcacg atcgcgggca tcgatataaa tccagctcgt cgggcgcgca ttctcggttt
    34261 tcagcatcga cggtccggta gagactttaa cgtcggccac gtctgccagg gtgatttgct
    34321 gcttcatcgg cgtcaggatc ggtagctggc gcagtgcctg cgggctatcg cgccagcttt
    34381 gcggataacg cagattaatg ggataacggg caatcccttc caccgtttcg ccaaccatcg
    34441 ccccgcccac cgcagaagtc acaaacaact gcacatccgc caccgtcata ccgtaacgcg
    34501 cggctttttc acggttaatc tcaacgttga tatagcgccc accttccaga cgctcggcaa
    34561 gcgcagaagc cacgcctggc accgttcgcg ctacttcttc aatttgctca gccatcgcgt
    34621 cgatatccgc cagcacagtg ccggaaactt taatgccgat ggggctttta atgccggttg
    34681 agagcatatc gatacggtta cgaattggcg gcacccacag attcgccagc cccggcagcc
    34741 gcacggtgtt atccagttcc tcaatgattt tgtccatcgt catgccaggc cgccactgat
    34801 cctgcggctt aagctggatg gtcgtttcaa ccatctcgag cggagcagaa tcggtggcgg
    34861 tttccgcttt cccggttttg ccaaataccc gcgccacttc aggtacgctc ataattagct
    34921 tgtcgttttt ttgcagcata ctcgccgcct ctgctgcgga aatccccggc agcgtcgatg
    34981 gcatatacaa caagtcgcct tcattgatct gcggtaaaaa ttccccgcca actttattga
    35041 gcggccagag aaccgtcagc accgaaagcg ctgccaccaa cagcgtggtt ttcggccagt
    35101 gcagtacttt cagcaataga ggatgataaa cacgaatcaa aaagcgattg agcgggttac
    35161 tgctttccgg cggaattttg ccacggatcc agtaacccat caggatcggg atcactacga
    35221 tcgccagcag cgccgcaccc gccatcgcat acgttttggt gaacgccagc gggccaaaca
    35281 gacgcccttc ttgcccttcc agggtgaaga ttgggataaa cgacagcgtg ataatcagca
    35341 gactgataaa cagcgccggc cccacttcaa cagatgcatc ggtaatcacc tgccagcgcg
    35401 ttttattatc cagcgtggcg tcaggatgct ggtgctgcca ctcttccagc cgtttatgcg
    35461 cattctcgat catgacgata gcagcatcga ccatcgcccc gacggcaatc gcaatgccac
    35521 ccaacgacat aatattggca ttcagtccct ggaagggcat gacaataaaa gcaatacaca
    35581 accccagcgg caacgaaata atcgccacca gcgccgagcg cacatgccag agaaacagcg
    35641 cacagactac cgccaccaca ataaactctt ccagcaactt gccgctgagg ttgtcgatgg
    35701 cgcggtcaat gagctggctg cgatcgtatg ttgtaactat ctccacgcct tccggcagac
    35761 tacttttcag cgtttccagt ttgtccttca cggcggcgat cacttctcgg gcgtttttgc
    35821 cggagcgcag gatcaccacc ccgcccgcca cttcgccttc gccgttcagt tcggcaatgc
    35881 cccggcgcat ctccgggcca acctggacct tcgcaacatc gcgcagataa acgggcacgc
    35941 cattttcact ggcttttaaa acgatgtgat taaagtcgtc gagcgtttgc agatagccgc
    36001 tggcgcgcac catatattcc gcttccgcca gttcgatcga cgaaccgccc gcttcctggt
    36061 ttgaagcatc cagcgcgctt tttacttcgg cgagactgat gccatactgc gccaggcgct
    36121 ggggatcgat aaccacctga tactctttca ccacaccgcc caccgacgcc acttccgcaa
    36181 cgtcagggat ggttttcagc tcatatttga gaaaccagtc ctgtaatgag cgtaaatcgg
    36241 ccagatcgtg cttaccgctg cgatccacca gtgcatattc atagatccag ccaacacccg
    36301 tggcatctgg ccccagctcg gcgctgactc ccgcaggcag cttaccctgt acctggttga
    36361 ggtactccag cacccgcgaa cgcgcccagt acggatcggt accatcttcg aaaatgacat
    36421 acacataaga gtcgccaaac tgcgagaaac cacgcacagt cttcgcgcca gcgcaccgac
    36481 aacatggtgg tggttagcgg ataagtcacc tgattttcaa cgatttgcgg tgcctgcccg
    36541 ggatagctgg ttttaataat cacctgcaca tcggagagat ccggcagcgc atccactggc
    36601 gtattaatga tggtccaggt gccccagatg ctaagaaaca acgcgcccat cagcaccaaa
    36661 aaacggttcg ccaccgagcg acgaataatc cattcaatca ttggttattc cctcaatgcg
    36721 catgggtagc actttcagag cgcatccgct ccagtgcgcc agaaatattg gcttcggaat
    36781 caatcaggaa aaggccgctg gaaaccacct tttcaccttc cgccagacca gagcgtaatg
    36841 cggtgacacc ttgcgatgcc tggaaaacgg caacgcgttt cggtacaaag cgcccgtcgg
    36901 catcaatggt aatcacccgc tgttcgctac cggtatcaat cagcccttgt gacggaatga
    36961 gcagcatcgg ttcgctggcg gtattgagtt gcaaccaggc gttcatgccc ggttttagcg
    37021 cctcgtcggc gttgtcgact tccagacgca gctgcagcgt gcgggtcgcg gcatccacgc
    37081 cgggtagcag cgtccatttg cggatggtga gtgttttatc cggtcgtgcc ggaacggtga
    37141 gcgtaaactg cgaggcatct ttcaccagcc aggcgataga ctccgggatc gcagcagtga
    37201 cccacaccgg gtccataccc tgaattttcg ctaccacgtt atctttggcg atattcattc
    37261 ccgcgcgcag atcaaacgcg gtgatcacgc catcaatggg cgctttgagc gtaaagcgag
    37321 tctggatttt ttgcgtggcg atcaggcggc gaatatccgc ctccggcatt cccgccagtc
    37381 gcagccgctc aagaatgcct tcagtctggg tcgccgtacc gccggtttcg cgcagcagta
    37441 aatactcact ctgcgcttcc acccagtcag gaatggtcag gtcgagaagc ggtgtgccct
    37501 tttgtacttt atcgcccacg gtaagcggat acaccttgtc gataaacccg gcagcgcgag
    37561 cctgcacaat ggcatactga tactcgttgt aactgacatt cgccgggaaa ctctgggcaa
    37621 aagtcagcgg tccgcgcgtg acggtagccg ttttcacccc cagattctgc gtctgagtcg
    37681 ggtcaatgcg cacaccagac gcagaactct cttcatcggc atatttcggc accagatcca
    37741 tatccataaa cggcgattta cctggtttat cgaaccgcgt attggggtac atcgggtcgt
    37801 accagaataa gattttacgt
//
LOCUS       DAJVSY010000018        37319 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.018, whole genome shotgun sequence.
ACCESSION   DAJVSY010000018 DAJVSY010000000
VERSION     DAJVSY010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 37319)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37319)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37319
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.018"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..808)
                     /locus_tag="OQQ19_000844"
     CDS             complement(<1..808)
                     /locus_tag="OQQ19_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001019361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antA/AntB antirepressor family protein"
                     /protein_id="HCS1802561.1"
                     /translation="MTIEKSRFSSGAAPQPNVNTGVINGNDFAAIVPVIAGRIGGREA
                     NIVSAKALHKALGVGRDFTNWIKGRIDQYGFIAGTDFIRVENLSTPKRASAKTRQQIE
                     HDYLLSLDMAKEVAMVERNEQGRAIRRYFIQCEEELQRSVPEIAARYRRQLKARLSAA
                     NNFKPMCDALNMARAEMGKTTQQRHYSNESNMIARIVLGGMTAKQWAQANGITGEPRD
                     SMNAAQLEHLAYLESTNITLIDMGMEYEQRKGELTRLSQRWLAKRLEVNHA"
     gene            complement(822..1253)
                     /locus_tag="OQQ19_000845"
     CDS             complement(822..1253)
                     /locus_tag="OQQ19_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001437021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802562.1"
                     /translation="MEKKNRPLQAANSDIRVSDVTPLTKSLQAPKRTPKKHRARVYML
                     RTGIEGWTENDILRYCRLSSGRNYASELERRLDIQLERIDEKNPDGIGSHLRYRFTGR
                     GDVLKVIRLVNHNADAGGYQGLSQPEIADILNLYPDNLTAA"
     gene            complement(1253..1456)
                     /locus_tag="OQQ19_000846"
     CDS             complement(1253..1456)
                     /locus_tag="OQQ19_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001018038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family phage regulatory protein"
                     /protein_id="HCS1802563.1"
                     /translation="MNIDTIPTKGYIRRFRLAELLGVSVSTIDRKVRNGSLPRPVKLG
                     EKITAFDAVEIHNWLAERRGKVA"
     gene            complement(1569..2417)
                     /locus_tag="OQQ19_000847"
     CDS             complement(1569..2417)
                     /locus_tag="OQQ19_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000735989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802564.1"
                     /translation="MKKLPPAPFFRLNRAAELLEIDIDDLLIMAAAESIYLSAYLCGY
                     DGTLHSIASLYRNCSLFPDVKEDCLLLADIITEVEDEKSFKAGVVNHIDCHVLGLWHV
                     NASYILDIAGLDSIDTPARIFSPAHRKRELDVSANYYFFLDYTKHAFHEISVEDLYIT
                     RPWVEYIGECMDKNQPIYSPETRINLQALYEDVKNVEHGNRERHRQKREICLLALIYV
                     KRHYPEECKGKNGKETNEAWANATINHWALLGGGYDEPSIDYLKKLIADADRTPEERT
                     TAGKKR"
     gene            complement(2513..3772)
                     /locus_tag="OQQ19_000848"
     CDS             complement(2513..3772)
                     /locus_tag="OQQ19_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014639344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1802565.1"
                     /translation="MPKLTDMQIRAWIKSGERFEGRADGNGLYLRYREADKTPTWRFR
                     YKLAGKSRAMLIGSYSELSLSKARETAKELSARVALGYDVAGEKQKRKTEALAKMEAE
                     KNAMRVSELAAEYFERQILPRWKHPDILRRRIDKDINPCIGSMKVEDVKPRHIDDMLK
                     GIVDRGAPTIATDVLRWTRRIFDYGIKRHALEINPCSAFEVADAGGKEAARDRWLTRD
                     ELIQLFKAMRTAKGFSRQNEITFKLLLALCVRKMELCAARWEEFDLDGAVWHLPEERS
                     KNGDPIDIPLPSPAVEWLRELHTFSCNSAWVLPARKMQNRMIPHIQESTLPVALAKVR
                     AEMPDVPNFTIHDFRRTARTHLAALGVDPVVAERCLNHRIKGVEGIYNRHQYFDERKA
                     ALAQWADLLVALESGKDYNVTPLRRAN"
     gene            complement(3963..4826)
                     /locus_tag="OQQ19_000849"
     CDS             complement(3963..4826)
                     /locus_tag="OQQ19_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HCS1802566.1"
                     /translation="MIRSMTAYARREIKGEWGSATWEMRSVNQRYLETYFRLPEQFRS
                     LEPVVRERIRSRLTRGKVECTLRYEPDISAQGELILNEKLAKQLVTAANWVKMQSDEG
                     EINPVDILRWPGVMAAQEQDLDAIAAEILAALDGTLDDFIVARETEGQALKALIEQRL
                     EGVTAEVVKVRAHMPEILQWQRERLVAKLEDAQVQLENNRLEQELVLLAQRIDVAEEL
                     DRLEAHVKETYNILKKKEAVGRRLDFMMQEFNRESNTLASKSINAEVTNSAIELKVLI
                     EQMREQIQNIE"
     gene            4953..5669
                     /gene="rph"
                     /locus_tag="OQQ19_000850"
     CDS             4953..5669
                     /gene="rph"
                     /locus_tag="OQQ19_000850"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006803115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HCS1802567.1"
                     /translation="MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE
                     EGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAV
                     DLKALGEFTITLDCDVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVA
                     AVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLL
                     ALARGGIESIVATQKAALAN"
     gene            5735..6376
                     /gene="pyrE"
                     /locus_tag="OQQ19_000851"
     CDS             5735..6376
                     /gene="pyrE"
                     /locus_tag="OQQ19_000851"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HCS1802568.1"
                     /translation="MKPYQRQFIEFALGKQVLKFGEFTLKSGRKSPYFFNAGLFNTGR
                     DLALLGRFYAEALVDSGLEFDLLFGPAYKGIPIATTTAVALAEHHDLDLPYCFNRKEA
                     KDHGEGGNLVGSALQGRVMLVDDVITAGTAIRESMEIIQANGATLAGVLISLDRQERG
                     RGEISAIQEVERDYNCKVISIITLKDLIAYLEEKPEMAEHLAAVKAYREEFGV"
     gene            complement(6413..7009)
                     /gene="slmA"
                     /locus_tag="OQQ19_000852"
     CDS             complement(6413..7009)
                     /gene="slmA"
                     /locus_tag="OQQ19_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000818604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion factor SlmA"
                     /protein_id="HCS1802569.1"
                     /translation="MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVS
                     EAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGERN
                     PGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYTTDETLLAS
                     QILAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ"
     gene            complement(7116..7574)
                     /gene="dut"
                     /locus_tag="OQQ19_000853"
     CDS             complement(7116..7574)
                     /gene="dut"
                     /locus_tag="OQQ19_000853"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000976070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HCS1802570.1"
                     /translation="MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLDDAVELA
                     PGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVW
                     NRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ"
     gene            complement(7552..8772)
                     /gene="coaBC"
                     /locus_tag="OQQ19_000854"
     CDS             complement(7552..8772)
                     /gene="coaBC"
                     /locus_tag="OQQ19_000854"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HCS1802571.1"
                     /translation="MSLAGKKIVLGVSGGIAAYKTPELVRRLRDRGADVRVAMTEAAK
                     AFITPLSLQAVSGYPVSDSLLDPAAEAAMGHIELGKWADLVILAPATADLIARVAAGM
                     ANDLVSTICLATPAPVAVLPAMNQQMYRAAATQHNLEGLASRGLLIWGPDSGSQACGD
                     IGPGRMLDPLTIVDMAVAHFSPVNDLKHLNIMITAGPTREPLDPVRYISNHSSGKMGF
                     AIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAA
                     VADYRAATVAPEKIKKQATQGDELTIKMVKNPDIVAGVAALKDHRPYVVGFAAETNNV
                     EEYARQKRIRKNLDLICANDVSQPTQGFNSENNALHLFWQDGDKVLPLERKELLGQLL
                     LDEIVTRYDEKNRR"
     gene            8944..9612
                     /gene="radC"
                     /locus_tag="OQQ19_000855"
     CDS             8944..9612
                     /gene="radC"
                     /locus_tag="OQQ19_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HCS1802572.1"
                     /translation="MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTL
                     AKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQLKGIAELARRYYNVRMREESPLL
                     SPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
                     KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAE
                     RGWI"
     gene            9829..10065
                     /gene="rpmB"
                     /locus_tag="OQQ19_000856"
     CDS             9829..10065
                     /gene="rpmB"
                     /locus_tag="OQQ19_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008457442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HCS1802573.1"
                     /translation="MSRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEK
                     RFVTLRVSAKGMRVIDKKGIDTVLAELRARSEKY"
     gene            10086..10253
                     /gene="rpmG"
                     /locus_tag="OQQ19_000857"
     CDS             10086..10253
                     /gene="rpmG"
                     /locus_tag="OQQ19_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HCS1802574.1"
                     /translation="MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVR
                     QHVIYKEAKIK"
     gene            10351..11160
                     /gene="mutM"
                     /locus_tag="OQQ19_000858"
     CDS             10351..11160
                     /gene="mutM"
                     /locus_tag="OQQ19_000858"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HCS1802575.1"
                     /translation="MPELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRL
                     SDQPVLSVQRRAKYLLLELPEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMSNGKV
                     LRYTDPRRFGAWLWTKELEGHNVLAHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMD
                     NKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLK
                     DFLQSDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQK"
     gene            complement(11199..11678)
                     /gene="coaD"
                     /locus_tag="OQQ19_000859"
     CDS             complement(11199..11678)
                     /gene="coaD"
                     /locus_tag="OQQ19_000859"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HCS1802576.1"
                     /translation="MQKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKP
                     MFTLEERVALAQQATAHLGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQL
                     AHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAKLA"
     gene            complement(11686..12963)
                     /gene="waaA"
                     /locus_tag="OQQ19_000860"
     CDS             complement(11686..12963)
                     /gene="waaA"
                     /locus_tag="OQQ19_000860"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HCS1802577.1"
                     /translation="MLELLYTALLYLIQPLIWIRLWVRGRKAPAYRKRWGERYGFYRH
                     PLKPGGIMLHSVSVGETLAAIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGKDVQ
                     HVYLPYDLPDALNRFLNKVDPKLVLIMETELWPNLIAALHKRKIPLVIANARLSARSA
                     AGYAKLGKFVRRLLRRITLIAAQNEEDGARFVALGAKNNQVTVTGSLKFDISVTPQLA
                     AKAVTLRRQWAPHRPVWIATSTHEGEESVVIAAHQVLLQQFPNLLLILVPRHPERFPD
                     AINLVRQAGLSYITRSSGEVPSTSTQVVVGDTMGELMLLYGIADLAFVGGSLVERGGH
                     NPLEAAAHAIPVLMGPHTFNFKDICARLEQASGLITVTDATTLAKEVSSLLTDADYRS
                     FYGRHAVEVLYQNQGALQRLLQLLEPYLPPKTH"
     gene            13376..14434
                     /gene="rfaQ"
                     /locus_tag="OQQ19_000861"
     CDS             13376..14434
                     /gene="rfaQ"
                     /locus_tag="OQQ19_000861"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptosyltransferase
                     RfaQ"
                     /protein_id="HCS1802578.1"
                     /translation="MDKLFRRILLIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQ
                     DTIPILSENPEINALYGIKNKKAKASEKIANFFHLIKVLRANKYDLIVNLTDQWMVAI
                     LVRLLNARVKISQDYHHRQSAFWRKSFTHLVPLQGGNVVESNLSVLTPLRVDSLVKQT
                     TMSYPPASWKRMRRELDHAGVGQNYVVIQPTARQIFKCWDNAKFSAVIDALHARGYEV
                     VLTSGPDKDDLACVNEIAQGCQTPPVTALAGKVTFPELGALIDHAQLFIGVDSAPAHI
                     AAAVNTPLISLFGATDHIFWRPWSNNMIQFWAGDYREMPTRDQRDRNEMYLSVIPAAD
                     VIAAVDKLLPSSTTGTSL"
     gene            14431..15555
                     /locus_tag="OQQ19_000862"
     CDS             14431..15555
                     /locus_tag="OQQ19_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HCS1802579.1"
                     /translation="MIVAFCLYKYFPFGGLQRDFMRIAQTVAARGHHVRVYTQSWEGE
                     YPDVFELIKVPVKSHTNHGRNAEYFAWVQKHLREHPVDKVVGFNKMPGLDVYYAADVC
                     YAEKVAQEKGFFYHLTSRYRHYAAFERATFEQGKPTQLLMLTDKQIADFQKHYQTEAE
                     RFHILPPGIYPDRKYSQQPANSREIFRKKNGITEQQYLLLQVGSDFTRKGVDRSIEAL
                     ASLPDSLRHNTLLYVVGQDKPRKFEALAEKRGVRSNVHFFSGRNDVSELMAAADLLLH
                     PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIVDANCGEAIAEPFRQETLNEILRKA
                     LTQSSLRQAWAENARHYADTQDLYSLPEKAADIITGGLDG"
     gene            15548..16345
                     /gene="rfaP"
                     /locus_tag="OQQ19_000863"
     CDS             15548..16345
                     /gene="rfaP"
                     /locus_tag="OQQ19_000863"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312532.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptose(I) kinase RfaP"
                     /protein_id="HCS1802580.1"
                     /translation="MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAG
                     KSYFLKWHRGTTLKEIIKNLLSLRMPVLGADREWSAIHRLRDVGVDTMYGVAFGEKGI
                     NPLSRTSFIITEDLTPTISLEDYCADWATNPPDVRVKRMLIKRVATMVRDMHAAGINH
                     RDCYICHFLLHLPFSGKEEELKISVIDLHRAQLRTRVPRRWRDKDLIGLYFSSMNIGL
                     TQRDIWRFMKVYFATPLKDILKQEQGLLSQAEAKATKIRERTIRKSL"
     gene            16361..17377
                     /gene="waaO"
                     /locus_tag="OQQ19_000864"
                     /gene_synonym="rfaI"
     CDS             16361..17377
                     /gene="waaO"
                     /locus_tag="OQQ19_000864"
                     /gene_synonym="rfaI"
                     /EC_number="2.4.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001540083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     3-alpha-galactosyltransferase"
                     /protein_id="HCS1802581.1"
                     /translation="MSAHYFNPQEMINKTIIFDERPAASVASSFHVAYGIDKNFLFGC
                     GVSITSVLLHNNDVSFVFHVFIDDIPEADIQRLAQLAKSYRTCIQIHLVNCERLKALP
                     TTKNWSIAMYFRFVIADYFIDQQDKILYLDADIACQGNLKPLITMDLANNVAAVVTER
                     DANWWSLRGQSLQCNELEKGYFNSGVLLINTLAWAQESVSAKAMSMLADKAIVSRFTY
                     MDQDILNLILLGKVKFIDAKYNTQFSLNYELKKSFVCPINDETVLIHYVGPTKPWHYW
                     AGYPSAQPFIKAKEASPWKNEPLMRPVNSNYARYCAKHNFKQNKPINGIMNYIYYFYL
                     KIIK"
     gene            17394..18389
                     /locus_tag="OQQ19_000865"
     CDS             17394..18389
                     /locus_tag="OQQ19_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001001722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide 1,2-glucosyltransferase"
                     /protein_id="HCS1802582.1"
                     /translation="MNEFIKERFSYLADNKKENAPELNVSYGIDKNFLYGAGVSISSV
                     LINNSDINFVFHVFTDYVDDDYLKSFNETAKQFNTSIIVYLIDPKYFADLPTSQFWSY
                     ATYFRVLSFEYLSESISTLLYLDADVVCKGSLKPLTEIIFKDEFAAVIPDNDSTQAAC
                     AKRLNIPEMNGRYFNAGVIYVNLKKWHEANLTPYLLKLLRGETKYGSLKYLDQDALNI
                     AFNMNNIYLAKDFDTIYTLKNELYDRSHRKYQQTITDKTVLIHYTGITKPWHSWAGYP
                     SASYFNIAREQSPWKKYPLKEARTVAEMQKQYKHLFAHGEYIKGITSLIKYKLKK"
     gene            18399..19091
                     /gene="rfaY"
                     /locus_tag="OQQ19_000866"
     CDS             18399..19091
                     /gene="rfaY"
                     /locus_tag="OQQ19_000866"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000633080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptose(II) kinase RfaY"
                     /protein_id="HCS1802583.1"
                     /translation="MITSIRYRGFSFYYKDNDNKYKEIFDEILAYNFKTVKVLCNIDD
                     TKVSLIDTKYGRYVFKVFAPKTKRNERFLKSFVKGDYYQNLIVETDRVRSAGLTFPND
                     FYFLAERKIFNYASVFIMLIEYVEGVELNDMPIIPENVKAEIKASMEKLHALNMLSGD
                     PHRGNFIVSKDGVRIIDLSGKSCTAERKARDRLAMERHLGIANEIKDYGYYSVIYRTK
                     LRKFIKKLKGKA"
     gene            19117..20142
                     /locus_tag="OQQ19_000867"
     CDS             19117..20142
                     /locus_tag="OQQ19_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000364797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactose--(galactosyl) LPS
                     alpha1,2-galactosyltransferase"
                     /protein_id="HCS1802584.1"
                     /translation="MDLLAESITEVAVSGEIANTDRVLNIAYGIDRNFLFGAAVSMQS
                     VVMHNPDLAVKFHLFTDYIDEDYLQRVNAFTSKNANVEVIIYKVSNAFIDIFPSLKQW
                     SYATFFRLVAFQYLSETIENLLYIDADVICKGSLAGLLDINFDEDKFAAVIKDVPFMQ
                     EKPAKRLAIEGLPGNYFNAGVVYLQLEAWAKNDFMNKAIAMLASDPQHTKYKCLDQDI
                     LNILFFGHCNFISGDYDCFYGIDYELKNKSDEDYKKTITDDTKLIHYVGVTKPWNDWT
                     NYPCQKYFNEAYQASCWNDVAFIPATNEKQYQVKYQHAKKNGDTFNAFIYFIKFKLNK
                     YKRKLFG"
     gene            20227..21210
                     /locus_tag="OQQ19_000868"
     CDS             20227..21210
                     /locus_tag="OQQ19_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HCS1802585.1"
                     /translation="MSNDYPLVSIIIPTYNSSDYITETLTKLEKQTYPNFEIVIVNDG
                     SKDNTSNVLREYGLTHSRLIIVNKENGGVSSARNTGIRKAQGQFICFMDDDDEIDPNY
                     LLKMYTRQHETGGDAIYCGLYGHYIKDGVTYSPINTEFNEGSLLFDFFYKKVRFHIGC
                     LFIRKQLLEENNLFFDEDLRLGEDLDFIYRLLITCDMYAVPYYMYKHNYRENSLMNSC
                     RTITHYRHESFAHERIYSSVMQLYKGNRKEEIHTLLSQNRAYHKTRYLWNVLLNGDFK
                     LLNQLVESNEKELRYCNLPGKRDKRRAKILASKNYILWRMVRLVNRKKNKR"
     gene            21256..22509
                     /locus_tag="OQQ19_000869"
     CDS             21256..22509
                     /locus_tag="OQQ19_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012311869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HCS1802586.1"
                     /translation="MSFCWNEINSGIKSLILILCIFSLMTLSLWDDVATKFLHAAGII
                     SALYFLATPKKTITNNPTLLIFISLCLLGIVNIIWYSHYKVSGSVYTNAYRGPMETGK
                     IALCSAFIFLVLFAKNEMRTKIKFGKLILFASLATQLLFFAHAMWQHFYLNVDRVALS
                     ASHATTAGYIILFPSLLASILILKSDFRHKTTLYTINFMLSLCAVIVTETRAAILVFP
                     FFALILIVMDSYINKRINYKLYCFIAIALLAGVFSFKDTLLMRMNDLNNDLVNYSHDN
                     TRTSVGARLAMYEVGLKTYSPIGQSLEKRAEKIHELEEKEPRLSGALPFVDSHLHNDL
                     IDTLSTRGIPGVVLTILAFSAILIYALRTAKEPYILILLFSLLVVGLSDVILFSKPVP
                     TAVFVTIILLCAYFKAQSDQYLLDK"
     gene            complement(22579..23559)
                     /gene="rfaC"
                     /locus_tag="OQQ19_000870"
     CDS             complement(22579..23559)
                     /gene="rfaC"
                     /locus_tag="OQQ19_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase RfaC"
                     /protein_id="HCS1802587.1"
                     /translation="MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQI
                     PSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAENYDAVIDAQGLVKSAAL
                     VTRLAHGVKHGLDWQTAREPLASLFYNCKHHIAKQQHAVERTRELFAKSLGYSKPQTQ
                     GDYAIAQHFLTNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWG
                     APHEEERAKRLAEGFDYVEVLPKMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNI
                     TVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKRFIEENAENAAMI"
     gene            complement(23563..24609)
                     /gene="rfaF"
                     /locus_tag="OQQ19_000871"
     CDS             complement(23563..24609)
                     /gene="rfaF"
                     /locus_tag="OQQ19_000871"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-heptose--LPS heptosyltransferase RfaF"
                     /protein_id="HCS1802588.1"
                     /translation="MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPL
                     LSRMPEVNEAIPMPLGHGALEIGERRKLGHSLREKRYDRAYVLPNSFKSALVPFFAGI
                     PHRTGWRGEMRYGLLNDVRVLDKEAWPLMVERYVALAYDKGIMRTAQDLPQPLLWPQL
                     QVSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVL
                     FGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSGLMHVA
                     AALNRPLVALYGPSSPDFTPPLSHKARVIRLITGYHKVRKGDAAEGYHQSLIDITPQR
                     VLEELNTLLLQEEA"
     gene            complement(24619..25551)
                     /gene="rfaD"
                     /locus_tag="OQQ19_000872"
     CDS             complement(24619..25551)
                     /gene="rfaD"
                     /locus_tag="OQQ19_000872"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HCS1802589.1"
                     /translation="MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD
                     LDIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLH
                     YCLEREIPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANS
                     QIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA
                     DVNLWFLENGVSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFT
                     QADLTNLRAAGYDKPFKTVAEGVTEYMAWLNRDA"
     gene            25765..26961
                     /gene="kbl"
                     /locus_tag="OQQ19_000873"
     CDS             25765..26961
                     /gene="kbl"
                     /locus_tag="OQQ19_000873"
                     /EC_number="2.3.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020239151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine C-acetyltransferase"
                     /protein_id="HCS1802590.1"
                     /translation="MRGEFYQQLTNDLETARAEGLFKEERIITSAQQADITVADGSHV
                     INFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM
                     EDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQE
                     LEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFV
                     GENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNS
                     LAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLAGADHAIIPVMLGD
                     AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGK
                     QLGVIA"
     gene            26971..27996
                     /gene="tdh"
                     /locus_tag="OQQ19_000874"
     CDS             26971..27996
                     /gene="tdh"
                     /locus_tag="OQQ19_000874"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine 3-dehydrogenase"
                     /protein_id="HCS1802591.1"
                     /translation="MKALSKLKAEEGIWMTDVPVPELGHNDLLIKIRKTAICGTDVHI
                     YNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGG
                     RTHLCRNTIGVGVNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSF
                     DLVGEDVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKE
                     NLNDVMAELGMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKV
                     IFKGLFIKGIYGREMFETWYKMAALIQSGLDLSPIITHRFSIDDFQKGFDAMRSGQSG
                     KVILSWD"
     gene            28235..29269
                     /gene="waaH"
                     /locus_tag="OQQ19_000875"
                     /pseudo
     CDS             28235..29269
                     /gene="waaH"
                     /locus_tag="OQQ19_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418072.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucuronate:LPS(HepIII) glycosyltransferase"
     gene            complement(29256..30215)
                     /locus_tag="OQQ19_000876"
     CDS             complement(29256..30215)
                     /locus_tag="OQQ19_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312519.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HCS1802592.1"
                     /translation="MFPFRRNVLAFAALLALSSPVLAGKLAIVIDDFGYRPHNENQVL
                     AMPSAISVAVLPDSPHAREMATKAHNSGHEVLIHLPMAPLSKQPLEKNTLRPEMSSDE
                     IERIIRSAVNNVPYAVGINNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQA
                     MRAAQGTGVKVIKRKVFLDDSQNEADIRVQFNRAIDLARRNGSTIAIGHPHPLTVRVL
                     QQMVYNLPPDITLVKASSLLNEPQVDTSTPPKNAVPDAPRNPFRGVKLCKPKKPIEPV
                     YANRFFEVLSESISQSTLIVYFQHQWQGWGKQPEAAKFNASAN"
     gene            complement(30219..31502)
                     /gene="envC"
                     /locus_tag="OQQ19_000877"
     CDS             complement(30219..31502)
                     /gene="envC"
                     /locus_tag="OQQ19_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator EnvC"
                     /protein_id="HCS1802593.1"
                     /translation="MRGKAINTMTRAVKPRRFAIRPIIYASVLSAGVLLCAFSAHADE
                     RDQLKSIQADIAAKERAVRQKQQQRASLLAQLKKQEEAISEATRKLRETQNTLNQLNK
                     QIDEMNASIAKLEQQKAAQERSLAAQLDAAFRQGEHTGIQLILSGEESQCGQRLQAYF
                     GYLNQARQETIAQLKQTREEVAMQRAELEEKQSEQQTLLYEQRAQQAKLTQALNERKK
                     TLAGLESSIQQGQQQLSELRANESRLRNSIARAEAAAKARAEREAREAQAVRDRQKEA
                     TRKGTTYKPTESEKSLMSRTGGLGAPRGQAFWPVRGPTLHRYGEQLQGELRWKGMVIG
                     ASEGTEVKAIADGRVILADWLQGYGLVVVVEHGKGDMSLYGYNQSALVSVGSQVRAGQ
                     PIALVGSSGGQGRPSLYFEIRRQGQAVNPQPWLGR"
     gene            complement(31512..33056)
                     /gene="gpmM"
                     /locus_tag="OQQ19_000878"
                     /gene_synonym="pgmI"
     CDS             complement(31512..33056)
                     /gene="gpmM"
                     /locus_tag="OQQ19_000878"
                     /gene_synonym="pgmI"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HCS1802594.1"
                     /translation="MSVSKKPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPH
                     TLIDASGLEVGLPDRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGA
                     VDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPR
                     SAESSLKKFEEKFAALGKGRVASIIGRYYAMDRDNRWDRVEKAYDLLTLAQGEFQADT
                     AVAGLQAAYARDENDEFVKATVIRAEGQPDAAMEDGDALIFMNFRADRAREITRAFVN
                     ADFDGFARKKVVNVDFVMLTEYAADIKTAVAYPPASLVNTFGEWMAKNDKTQLRISET
                     EKYAHVTFFFNGGVEESFKGEDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKY
                     DTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQ
                     MRDPATGQAHTAHTNLPVPLIYVGDKNVKAVAGGKLSDIAPTMLSLMGMEIPQEMTGK
                     PLFIVE"
     gene            33301..33732
                     /locus_tag="OQQ19_000879"
     CDS             33301..33732
                     /locus_tag="OQQ19_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HCS1802595.1"
                     /translation="MQEIMQFVGRHPILSIAWIALLVAVLVTTFKSLTSKVKVITRGE
                     ATRLINKEDAVVVDLRQRDDFRKGHIAGSINLLPSEIKANNVGELEKHKDKPVIVVDG
                     SGMQCQEPANALTKAGFAQVFVLKEGVAGWAGENLPLVRGK"
     gene            33874..34125
                     /gene="grxC"
                     /locus_tag="OQQ19_000880"
     CDS             33874..34125
                     /gene="grxC"
                     /locus_tag="OQQ19_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 3"
                     /protein_id="HCS1802596.1"
                     /translation="MANVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEM
                     IKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLK"
     gene            34188..34655
                     /gene="secB"
                     /locus_tag="OQQ19_000881"
     CDS             34188..34655
                     /gene="secB"
                     /locus_tag="OQQ19_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015369180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HCS1802597.1"
                     /translation="MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDL
                     DTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYC
                     PNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA"
     gene            34655..35674
                     /gene="gpsA"
                     /locus_tag="OQQ19_000882"
     CDS             34655..35674
                     /gene="gpsA"
                     /locus_tag="OQQ19_000882"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HCS1802598.1"
                     /translation="MNQRNASMTVIGAGSYGTALAITLARNGHEVVLWGHDPEHIATL
                     ERDRCNAAFLPDVPFPDTLHLESDLATALAASRNILVVVPSHVFGEVLRQIKPLMRPD
                     ARLVWATKGLEAETGRLLQDVAREALGDQIPLAVISGPTFAKELAAGLPTAISLASTD
                     QTFADDLQQLLHCGKSFRVYSNPDFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTAL
                     ITRGLAEMSRLGAALGAEPATFMGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVQSA
                     QEKIGQVVEGYRNTKEVRELAHRFGVEMPITEEIYQVLYCGKNAREAALTLLGRARKD
                     ERSSH"
     gene            35754..36575
                     /gene="cysE"
                     /locus_tag="OQQ19_000883"
     CDS             35754..36575
                     /gene="cysE"
                     /locus_tag="OQQ19_000883"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001112113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HCS1802599.1"
                     /translation="MSCEELEIVWNNIKAEARTLADCEPMLASFYHATLLKHENLGSA
                     LSYMLANKLSSPIMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPL
                     LYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHAT
                     GIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGA
                     KIGAGSVVLQPVPPHTTAAGVPARIVGKPDSDKPSMDMDQHFNGINHTFEYGDGI"
     gene            complement(36628..37101)
                     /gene="trmL"
                     /locus_tag="OQQ19_000884"
     CDS             complement(36628..37101)
                     /gene="trmL"
                     /locus_tag="OQQ19_000884"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HCS1802600.1"
                     /translation="MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRL
                     RRAGLDYHEFTAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPE
                     TRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGALLRD"
BASE COUNT         9248 a         8883 c         9297 g         9891 t
ORIGIN      
        1 acgcatggtt tacctccaga cgtttagcga gccagcgttg cgacaggcgg gtgagttctc
       61 ctttgcgctg ctcatattcc atgcccatat caattaacgt gatattggtg ctttcgagat
      121 aggcgaggtg ttcaagctgt gctgcgttca tgctgtcccg tggttcgcca gtaatgccat
      181 ttgcctgcgc ccactgcttc gccgtcatgc cacccagcac gatacgggcg atcatgttgc
      241 tctcgttgct gtagtggcgc tgctgcgtcg ttttgcccat ctcggcacgg gccatattca
      301 gcgcatcgca cattggctta aagttgtttg cggcactgag acgggctttt agctggcgac
      361 gatagcgggc ggcgatttca ggcacgctac gctgtaattc ttcctcgcac tggatgaaat
      421 aacggcggat agcgcggccc tgctcgttgc gttcaaccat tgccacttct ttagccatat
      481 ccagcgatag caggtaatca tgctctattt gctggcgagt ttttgcgctc gcccgttttg
      541 gcgtgctcaa attttcaaca cggataaaat cggttccggc aataaaaccg tactggtcaa
      601 ttcggccttt aatccagtta gtaaagtcgc ggcccacccc cagcgcttta tgcaacgcct
      661 tagcgctcac aatattggct tcacgcccgc caatgcgtcc ggcaataacg ggaacaatag
      721 cggcaaagtc gttgccgtta attactcccg tgttaacgtt gggttgcggg gcggcccccg
      781 aactgaatcg gcttttttcg atagtcatat tttcggctcc gttatgcggc ggtgagattg
      841 tccgggtata gattgagaat gtcggcaatt tcaggctgag aaagtccctg atagccgcca
      901 gcgtcggcgt tatggttcac aagccgaata acttttagaa cgtcaccgcg cccggtaaag
      961 cgatagcgta aatgtgaccc tatcccgtcg gggttctttt cgtctatacg ctcaagctga
     1021 atatcaagcc tgcgctctaa ctcgctggcg tagttccttc cagacgaaag gcggcaataa
     1081 cgcagaatgt cattttctgt ccatccctct ataccagtac gcagcatata gactctggca
     1141 cgatgctttt tcggtgtgcg ctttggtgct tgaagggatt ttgtaagggg cgtaacatca
     1201 gatacgcgaa tatctgaatt agccgcctgt aatgggcggt ttttcttttc catcaggcca
     1261 ccttcccgcg gcgttctgcc agccagttgt gaatctcaac cgcatcaaac gcagttattt
     1321 tttctcccag ctttaccgga cgtggtagtg aaccgtttct tactttacgg tcgatggtgg
     1381 atacactaac gcccagcaat tcagccaggc ggaagcgtct gatatagcct tttgtaggga
     1441 tagtgtcgat gttcatgatt cccgtaacct cttagcgata gttgttgctt cgttacgggt
     1501 atttaatggc gtgcacgctc aaaaaggaat gatcgtattt tttactatcg tgatagtaaa
     1561 atttactatc accttttttt ccctgccgtg gtgcgttctt ccggtgttct gtctgcgtcg
     1621 gctatgagtt tcttcaggta atctatggat ggctcatcat agccgccccc caaaagcgcc
     1681 cagtggttta ttgtggcgtt cgcccatgct tcgttggttt ccttcccgtt cttcccttta
     1741 cactcttctg ggtagtgccg cttcacataa atcaacgcca agaggcaaat ttcgcgcttt
     1801 tgcctgtggc gctctctgtt tccgtgctca acgtttttaa catcctcata aagagcttgt
     1861 aagtttatgc gagtttcggg gctgtatatg ggctggtttt tgtccatgca ttcgccgata
     1921 tattcaaccc acggccttgt tatgtacaaa tcctctacgg atatttcgtg gaaggcatgt
     1981 tttgtataat cgagaaaaaa ataataattc gcacttacgt ctagttctct ttttctgtgt
     2041 gcggggctga atatgcgtgc gggagtgtca atagaatcaa gccctgcgat gtcgagtata
     2101 taggaggcgt taacatgcca tagcccaagc acatggcaat ctatatgatt tacaacgcct
     2161 gccttaaagc ttttttcgtc ctctacttca gtgattatgt cggcaagtaa taagcagtct
     2221 tctttgacgt ctgggaataa agagcaattg cggtaaagac tcgcgatgct atgtaatgtg
     2281 ccgtcgtagc cgcaaaggta cgcgctcaaa tatatagatt ctgccgccgc cataatcaaa
     2341 agatcatcaa tatctatttc taataattcg gctgctctgt taagcctgaa aaaaggggcg
     2401 ggtggtaatt ttttcattgt gtcacctttt acgctgcgcc ttattttgtg attgagccag
     2461 gcggtaaggc ttcccgcttt tcgccccgtc gagctaggct caatctattc agttagttcg
     2521 cccttctgag aggcgttacg ttgtagtctt ttccgctttc cagtgccacc agcagatcag
     2581 cccactgtgc cagtgctgct ttacgctcat caaaatactg atggcggtta taaatcccct
     2641 ctacgccctt aatgcgatga ttgaggcatc gttccgccac aacaggatca acacccaacg
     2701 ctgctaaatg agtacgtgcg gtgcgtcgaa agtcgtgaat cgtgaaatta ggcacatccg
     2761 gcatttcggc gcgaacctta gccagtgcta cgggtaaagt gctttcctga atatgtggga
     2821 tcattctgtt ttgcatcttc ctggccggaa gcacccatgc gctattacat gaaaaggtgt
     2881 gtagctctct caaccattca acggctgggg aaggtagagg tatatcaata gggtctccgt
     2941 ttttgctgcg ttcttccggc aaatgccata ccgcaccatc taaatcaaac tcttcccatc
     3001 gtgcggcgca taattccatt ttgcggacgc ataacgctaa cagtaatttg aacgtgattt
     3061 cgttctggcg actgaatccc ttagccgtgc gcatggcttt gaatagctgg attaactcat
     3121 cgcgggttaa ccagcggtca cgggcagctt ctttccctcc ggcgtctgcc acctcaaagg
     3181 ctgaacaggg gttaatctct agcgcgtgcc gtttgattcc gtagtcgaat atgcggcgcg
     3241 tccatctcag cacgtccgtt gctatggtcg gcgctccacg gtcaacaata cctttcagca
     3301 tgtcatcgat atggcgcggt ttcacgtcct ctaccttcat gctgccaatg caggggttta
     3361 tatctttgtc gatacggcgg cggagtatat cggggtgctt ccagcgcggg aggatctgac
     3421 gctcaaagta ttcagcggca agctctgaaa cgcgcatagc gttcttctct gcttccatct
     3481 tcgccagtgc ttcggttttg cgcttctgct tctctcctgc aacgtcatag cccagcgcaa
     3541 cgcgagccga tagctctttg gctgtctctc tggcctttga tagtgatagc tcgctatacg
     3601 aaccaattag catggcgcgg gacttccctg cgagtttata gcggaatctc catgtggggg
     3661 ttttgtcggc ttcacggtaa cgtaggtata aaccgttacc gtctgcccgc ccctcgaatc
     3721 gctctccgct cttaatccat gcgcggatct gcatgtctgt tagttttggc attttgcgaa
     3781 tatccaaact ttgaataggg ggtgtaccca aagcaatgta cccaaacctc attgggtaca
     3841 cctttgtgta caccataatc atgcgctttg ttgcgtcttt atgatagccc atgataacaa
     3901 aaaagcccgc tgggttgcgg gcttggtgtg atttatgcgt tgtcctaaat gttgctgata
     3961 gcttactcga tattctgaat ctgctcgcgc atctgctcaa tcaacacttt cagctcaatc
     4021 gcggagtttg tcacttcggc attgatagac ttcgacgcaa gagtgttcga ctcgcggttg
     4081 aattcctgca tcataaagtc cagacgacga ccaacggctt cttttttctt cagaatgttg
     4141 taggtctctt tgacatgcgc ttccaggcgg tccagttctt cggcaacgtc aattcgttgt
     4201 gccagcagaa ccagctcctg ctccagacgg ttgttttcca actgaacctg agcatcttcc
     4261 agcttcgcga ccagacgctc acgctgccat tgcaggattt ccggcatatg ggcgcggact
     4321 ttgaccactt cggcggtgac gccttccaga cgctgctcga tcaatgcttt cagtgcctga
     4381 ccttcggttt cgcgcgcgac aataaagtcg tccagcgtac catccagcgc cgcgagaatt
     4441 tcagcggcaa tggcgtcaag atcctgctcc tgggctgcca tcacgcccgg ccagcgtaga
     4501 atatcaaccg ggttgatttc cccttcgtca ctctgcattt ttacccagtt cgcggcagtt
     4561 accagctgtt tagccagttt ttcgttgagg atcagctcac cttgcgcgct aatatctggc
     4621 tcatagcgca gggtacattc cactttaccg cgcgtcaggc gagaacgaat acgctcgcga
     4681 acgacaggtt caaggctacg gaactgctcc ggcagacgaa agtaagtttc cagataacgc
     4741 tggtttaccg agcgcatttc ccaggttgcg ctcccccatt cacccttgat ttcacgccgg
     4801 gcgtaggcgg tcatactgcg gatcatagac gttcctgttt ataaaaggag aggtggaagg
     4861 attatagcca tcgatgcctt gtcaggatag gaataaccgc cggaagtccg tataatgcgc
     4921 agccacattt gtttcaagcc ggagatttca atatgcgtcc agcaggccgt agcaataatc
     4981 aggtgcgtcc cgttaccctg actcgtaact atacaaaaca tgcagaaggc tcggtgctgg
     5041 tcgaatttgg cgataccaaa gtgttgtgta ccgcctctat tgaagaaggc gtgccgcgct
     5101 tcctgaaagg tcagggccag ggctggatca ccgcagagta cggcatgctg ccacgttcta
     5161 cccacacccg taacgctcgt gaagcggcga aaggtaagca gggtggacgc acaatggaaa
     5221 tccagcgtct gatcgcccgt gctcttcgcg cggcagtaga tttgaaagcg ctgggtgagt
     5281 tcaccattac gctggactgc gacgtgcttc aggctgatgg tggcacgcgt accgcgtcga
     5341 ttacgggtgc ctgcgtggcg ctggcagatg cgctacagaa gctggtggaa aacggcaagc
     5401 tgaaaaccaa cccgatgaaa gggatggtag ccgcagtttc tgtcggaatt gtgaacggcg
     5461 aagcggtttg cgatctggaa tacgttgaag actctgccgc agagaccgac atgaacgtag
     5521 tgatgaccga agacgggcgc atcattgaag tgcaggggac ggcagaaggc gagccgttca
     5581 cccatgaaga gctactcacc ttgttggctc tggcccgagg gggaatcgaa tccattgtag
     5641 cgacgcagaa ggcggcgctg gcaaactgat ttttaaggcg actgatgagt cgcctttttt
     5701 ttgtctgtag aaaagtaaga tgaggagcga aggcatgaaa ccatatcagc gccagtttat
     5761 tgaatttgcg cttggcaagc aggtgttaaa gtttggcgag tttacgttga agtccgggcg
     5821 caaaagcccc tatttcttca acgccgggct gtttaatacc gggcgcgatc tggcactgtt
     5881 aggccgtttt tacgctgaag cgttggtgga ttccggcctt gagttcgatc tgctgtttgg
     5941 ccctgcttac aaagggatcc cgattgccac cactaccgcc gtggcgctgg cggagcatca
     6001 tgaccttgac ctgccgtact gctttaaccg caaagaggca aaagaccacg gtgaaggcgg
     6061 caatctggtt ggtagcgcgt tacaaggacg cgtaatgctg gtagatgatg tgatcaccgc
     6121 cggaacggcg attcgcgaat cgatggagat tattcaggct aatggcgcga cgcttgctgg
     6181 cgtgttgatt tcgcttgatc gtcaggaacg ggggcgcggc gagatttcgg cgattcagga
     6241 agttgagcgt gattacaact gcaaagtgat ctctatcatc accctgaaag acctgattgc
     6301 ttacctggaa gagaagccgg aaatggcgga acatctggcg gcggttaagg cctatcgcga
     6361 agagtttggc gtttaaagaa actcgccgga tgaaaagtca tccggcgtca tattactgca
     6421 actgtgccgc aattagcggc cagcgggcgt caaaatcatc cgtcgggcgg tatttaaatt
     6481 cgctgcggac aaaacgtgac agcatacctt cacagaaggc caggatctgg cttgccagca
     6541 gggtttcatc ggtggtgtaa ccttcaccct cacgcattct cttttcacgc aatacctgac
     6601 gcagctgcgc ttcaatacgc tcgaacagct ggttgatgcg cccttgcagg cgatcctgtt
     6661 caaacattag cgcatgacca gtgaggatgc gggtcaggcc aggattacgc tcaccaaaac
     6721 cgagaagcag caacacaatc agacgcaggc gcgctgtggt gtctttctca tctttcagaa
     6781 tcaggttgat gcgagtaatc aggctatctt cgataaactc aatcaggcta tcgaacatgc
     6841 gggtcttact ggggaagtgg cgatacagtg ccgcttcgga aacgccgaca gaggcggcca
     6901 gttttgccgt cgtgatacgt tggcttccat cgctggattc cagcatcagc gccagagact
     6961 gaagtatttc ctcgcgacgg ttccttttcg cagtttgttt ttctgccatg ttacaaaata
     7021 cccctgaaaa taagcacctg ccaggcggca cccacgctat gaccgcaaac gaaatgtttg
     7081 cggctatgtt atgacgttat tcggatgcgt atgtgttact gacgaccaga gtgaccaaag
     7141 ccgccttcac cgcggtcggt ggcgtcgaaa tcttccacca gattaaattc agcctgtact
     7201 accggaacaa aaatcatctg ggcgatgcgt tcgccaggtt gaatggtgaa gctgtcctga
     7261 ccacggttcc acacggaaat catcaactgg ccctgatagt cggaatcgat caatcctacc
     7321 aggttaccaa gcacgatacc gtgcttatgt cccaatccgg agcgcggcag catcattgcc
     7381 gccagtgaag gatcggcaat atgaatcgcc agcccggtcg gaaccagcgt agtgtcaccc
     7441 ggagccagtt ctacggcgtc gtcgagacag gcacgcaggt caagtccggc agagccagag
     7501 gtggcataag tcgggagcgg aaattccttc ccaacgcgcg ggtccagaat cttaacgtcg
     7561 atttttttca tcataacggg tcacgatctc gtcgagtaat agttggccaa ggagctcttt
     7621 gcgctcaagc ggtaagactt tatctccgtc ctgccagaaa aggtgtaatg cgttgttttc
     7681 gctgttaaat ccttgagttg gctgggaaac atcgttcgcg cagatcagat caaggttttt
     7741 acggatacgt ttttgccggg cgtattcttc cacattattt gtttcggcgg caaatccaac
     7801 gacgtagggt cgatggtctt ttagtgcggc aacgcctgcg acgatatcgg ggtttttaac
     7861 catttttatt gttaattcat caccctgcgt ggcctgcttt ttgatttttt ctggggccac
     7921 ggtagctgcg cgataatccg ccacggcggc gcagccgata aaaatatttt gctgctgtac
     7981 agaagcattc acggcggctt ccatttccag cgcggtcatc acatcaacac gtttaacaaa
     8041 cggtggcgtc ggtagtgaaa ccggacctga taccagcgtg acgttcgcgc cacgacgggc
     8101 agcggcggcg gcgatagcaa aacccatctt gccggagctg tgattagaga tataacgcac
     8161 gggatcgagc ggttcacgcg tcggaccggc ggtaatcata atgttcagat gtttcaggtc
     8221 gttgacgggc gaaaaatgcg ccaccgccat atccacaatg gttaacggat cgagcattcg
     8281 cccaggaccg atatcaccac aagcctgact gccactgtct ggcccccaga tgagcaaacc
     8341 acgggaagca agcccctcta aattatgctg cgtggcagcg gcacggtaca tctgctggtt
     8401 catggcgggg agcacggcta caggcgcagg tgtagccaga caaatcgtcg ataccaggtc
     8461 attcgccatt ccggcagcaa cacgggcaat caaatctgcc gtggcagggg cgagaatcac
     8521 taaatcagcc catttaccca gctcaatatg gcccatagcg gcttcggctg ccgggtccag
     8581 caaactgtcg gaaacgggat aaccagaaac cgcctgcaag ctaagtgggg tgataaaggc
     8641 ttttgccgct tcggtcatgg ctacgcggac gtcggccccg cgatcgcgca aacgacgcac
     8701 cagttcaggg gttttatagg cagcaatacc gccgctaacg ccgagaacga tttttttacc
     8761 ggccaggctc atgatgattt ttcctgttgg gtgacaccag aagttggcga ttttatcaca
     8821 atacttttgt tgtcgtgcct tcacctgaga atcactttgc gaggcgcttt ccaggattga
     8881 aaactggccg tcgatttaac ggaacggcta tgacaggatg cgagcaccac aaaggaggtg
     8941 aaggtgaaaa acaattcaca gctgttgatg ccgcgcgaaa aaatgctgaa gtttggtatt
     9001 agcgccttaa cggatgtcga gctgctggcg ctatttctgc gtaccggaac gcgcggtaaa
     9061 gatgtattaa ccctggcaaa agagatgctg gagaatttcg gctctcttta tggcttgtta
     9121 acctctgaat atgaacaatt tagtggcgtt catggaattg gcgtggcgaa atttgcccag
     9181 ttaaagggga ttgctgaact ggcgcggcgt tactacaacg tgcggatgcg tgaagaaagc
     9241 cctttactca gcccggagat gacgcgggaa tttttacaaa gccagcttac gggtgaggag
     9301 cgggagatct ttatggtgat ctttctcgac tcacaacacc gggttataac gcatagccgt
     9361 cttttttccg gcacgctaaa ccatgttgaa gtccatcctc gggaaattat ccgcgaagcg
     9421 ataaaaataa acgcctcggc gctgatcctt gcacataatc acccttcggg ttgtgctgaa
     9481 cccagtaaag cggataaact cattactgaa cggataataa agagttgtca gttcatggat
     9541 ttacgcgtgc tcgaccatat cgtgattggg cgtggagagt atgtttcttt tgccgaacgc
     9601 ggctggattt aacccgctat gcgcgatcct tcgggatctt tgtctgttcg ggacttgagc
     9661 acatcgctga gtcagcgtat actacgccac ctttgagaat ctcgggtttg gcatttgggc
     9721 ctggcaatcg agagttcaca tagaactgcg atgactgggc tgtaaagcct gacgaggcgc
     9781 caatacccca tacgaagctc gagctaattt gatttttgga gaatagacat gtcccgagtc
     9841 tgccaagtta ctggcaagcg tccggtgacc ggtaacaacc gttcccacgc actgaacgcg
     9901 actaaacgcc gtttcctgcc gaacctgcac tctcaccgtt tctgggttga gagcgagaag
     9961 cgttttgtca ccctgcgcgt atctgctaaa ggtatgcgtg taatcgataa aaaaggcatc
    10021 gatacagttc tggctgaact gcgtgcccgt agcgaaaagt actaagtact tagaggaaat
    10081 aaatcatggc taaaggtatt cgtgagaaaa tcaagctggt ttcttctgct ggtactggtc
    10141 acttctatac cactacgaag aacaaacgta ctaagccgga aaaactggaa ctgaaaaaat
    10201 tcgatccagt tgttcgccag cacgtgatct acaaagaagc gaaaatcaaa taattctcgc
    10261 tttgatgtaa caaaaaacct cgctccggcg gggttttttg ttatctgctt gcccccatat
    10321 tgactgcatc tgttcattcc tggagatgct atgcctgaat tacccgaagt tgaaaccagc
    10381 cgccgcggca tagaaccgca tctcgttggt gcaaccattc ttcatgcagt ggtgcgcaac
    10441 ggacgcttgc gctggccggt ttcagaagag atctaccgtt taagcgacca accagtgctt
    10501 agcgtgcagc ggcgggctaa atatctgctg ctggagctgc ctgagggctg gattatcatt
    10561 catttaggga tgtctggcag cctgcgcatc cttccagaag aacttccccc tgaaaagcat
    10621 gaccatgtgg atttggtgat gagcaacggc aaagtgctgc gctacaccga tccgcgccgc
    10681 tttggtgcct ggctgtggac caaagagctg gaagggcata atgtgctggc ccatcttgga
    10741 ccggagccgc ttagcgacga tttcaatggt gagtatctgc atcagaagtg cgcgaagaaa
    10801 aaaacggcga ttaaaccgtg gctgatggat aacaagctgg tggtaggggt agggaatatc
    10861 tatgccagcg aatcactgtt tgcggcgggg atccatccgg atcggctggc gtcatcactg
    10921 tcgctggcag agtgtgaatt gttagctcgg gtgattaaag cggtgttgct gcgttcgatt
    10981 gagcagggtg gtacaacgct gaaagatttt ctgcaaagtg atggtaaacc gggctatttc
    11041 gctcaggaat tgcaggttta cgggcgaaaa ggtgagccgt gtcgggtgtg cggtacgccg
    11101 attgtggcga ctaaacatgc gcagcgggca acgttttatt gtcggcagtg ccagaagtaa
    11161 ttcatgcgcg ccggatcgca taccatccgg cataaacgct acgctaactt cgccatcagc
    11221 gcctgatgga cattctccgg caggaaatgg gtgacatcgc cctgatggcg cgccacctct
    11281 ttcaccaacg atgaagagat aaacgaccac tctttcgacg gcatcagaaa cacactttcc
    11341 agttccggca ttaagtggcg attcatatgc gccagctgca tttcatattc aaaatccgcc
    11401 accgcacgca ggccacgaat cagcaccgta gcgtgttgat tacgggcgaa gttcgccatc
    11461 aaatcactaa acccaactac ttccacgttc cccagatgcg cggttgcctg ctgtgccagc
    11521 gccacacgct cttccagggt aaacatcggt tttttactgg ggctggcggc aatcgccaga
    11581 ataacgtgat cgaacatttg cgtggcgcgc gtcacgatat cgatatgacc attggtaatg
    11641 ggatcgaaag tacccggata aatcgcccgt ttttgcataa caacctcaat gcgttttcgg
    11701 tggcaggtaa ggttccagca gttgaagcag gcgctgtagc gcgccctggt tttgatacag
    11761 tacttcaacg gcatgacggc catagaaact acggtaatcg gcgtcggtga gtaaagagga
    11821 aacctctttt gcaagcgtag tggcatcggt aacggtaatc agcccgcttg cctgctccag
    11881 ccgcgcgcaa atgtctttaa aattaaaagt atgcggcccc atcaataccg gaatagcgtg
    11941 tgcggcagct tccagcggat tatgcccacc acgttcaacc agtgaaccgc caacaaaggc
    12001 gagatcggca atgccgtaca gtaacatcaa ctcgcccatc gtatcgccaa ccacaacctg
    12061 cgtgctggtg gaggggactt cccctgaaga gcgtgtgata tagcttagtc cagcctggcg
    12121 gacaaggtta atcgcatccg ggaagcgttc tggatgacgg ggtaccagga tgagcaataa
    12181 attcgggaat tgctgtaaca atacctgatg tgcggcgatc accacactct cttcaccttc
    12241 gtgagtgctg gtggcaatcc ataccgggcg gtgtggtgcc cactggcggc gcagcgtcac
    12301 ggctttagca gccaactgcg gcgttacaga aatatcgaat ttcaggctac cggtaacggt
    12361 tacctggtta ttttttgcgc ccagcgccac aaaacgtgca ccatcttctt cattttgggc
    12421 ggcaatcagc gtaatacgac gcagcaagcg acggacgaat ttacccagtt tggcataacc
    12481 tgcggccgag cgggcagaga gtcgcgcgtt cgcgatcacc agcggaattt tacgtttatg
    12541 tagcgccgca atcaggttag gccatagttc ggtttccata atcaacacca gtttagggtc
    12601 gactttattc aggaaacgat taagtgcatc gggcaggtca tacggcagat aaacgtgctg
    12661 aacatccttc ccgaaagccg attgtacgcg ctccgaaccg gttggcgtca tggttgtaac
    12721 ggtaatcggt aaatcaggat aacgatgacg cagcgcgcgc accaacggga tcgccgccag
    12781 agtttcaccg acggagacgg agtgcagcat aatgccgcct ggttttagcg gatggcggta
    12841 aaaaccgtaa cgttcacccc agcgttttcg ataggccgga gccttacgtc cgcgcaccca
    12901 gagccgtatc cagatcagcg gctgaataag gtagagaagg gcggtgtaaa gcaattcgag
    12961 catagtaaat agctgactta tggatgtgct ggggattcta tgtatttagc tgtggcttta
    13021 ccattacttt tcccgttttt gacttaaata gcaatttacc cgccaattct tgctgaacat
    13081 ctatactttt tttgtatttt tatgcgattc attgatttct gctgtacgtg caggaaggaa
    13141 tcgcagagca acagtgaaag aatatggttg ctaatgattt tatttgattg atttctttat
    13201 tgaaaatcaa caatgtgctt aaaaatcatt cgggtcggat tgccgcgaaa gaagtgatac
    13261 actagcgcgt caatatcagt gcggtatcag tattcaggta gctgttgagc ctggggcggt
    13321 agcgtgcttt ttctgcttca ccttaatcgg ataatctcaa caaaaagagt tacttgtgga
    13381 taagctattt cgaagaattt tgctcattaa gatgcgtttt catggggata tgttattaac
    13441 tactcccgtc attagttcgc tgaaaaaaaa ttaccctgac gcaaaaatcg atgtgctgct
    13501 ttatcaggac accatcccga tcctgtctga aaatccagag attaacgcgc tctacggcat
    13561 aaaaaataaa aaagcaaaag cctcagaaaa aattgccaac ttttttcatc tcatcaaggt
    13621 attacgtgcc aataagtatg accttatcgt caatctcacc gatcaatgga tggttgctat
    13681 actggttcgc ttattaaatg cccgtgtgaa aatttcccag gattatcatc atcggcagtc
    13741 tgctttttgg cgtaaaagtt tcacccattt ggtgccgttg cagggtggaa atgtggtgga
    13801 aagtaactta tccgtgctga ccccattgcg agttgattcg ttggtgaagc agacaaccat
    13861 gagttacccg cctgcaagct ggaaacgtat gcgtcgcgaa cttgatcatg ctggtgttgg
    13921 acaaaattat gtggttatcc aacctacggc gcggcaaatc ttcaaatgct gggacaacgc
    13981 caagttttcc gctgtgattg atgccttaca tgctcgtggt tatgaagttg ttctgacgtc
    14041 cggcccagat aaagacgatc tggcctgcgt caatgaaatt gcgcagggat gccagacgcc
    14101 accagtaacg gcgctggctg gaaaggtgac cttcccggaa cttggtgcgt taatcgatca
    14161 tgcgcagctg tttattggcg ttgattccgc accggcgcat attgccgctg cagttaatac
    14221 gccgctgata tcgctgtttg gtgcgacaga ccatattttc tggcgtccct ggtcaaataa
    14281 catgattcaa ttctgggcgg gagattaccg ggaaatgcca acgcgcgatc agcgtgaccg
    14341 aaatgagatg tatctttcgg ttattccggc ggcagatgtc attgctgctg tcgataaatt
    14401 actgccctcc tccacgacag gtacgtcgtt atgatcgttg ctttttgttt atataaatat
    14461 tttccctttg gcggtttgca gcgcgatttt atgcgtattg ctcagacagt cgccgcccga
    14521 ggtcatcatg ttcgggttta tacccagtcg tgggaaggcg aataccctga tgtatttgaa
    14581 ctgatcaaag tgccggttaa atcgcatacc aatcacgggc gcaatgcgga gtattttgcc
    14641 tgggtgcaaa aacatttacg cgaacatccc gtcgataaag tcgttggatt caacaaaatg
    14701 ccggggctgg acgtttatta tgccgctgat gtttgttatg ccgagaaagt cgcgcaggaa
    14761 aaaggctttt tctatcacct gacgtcacgt tatcgccatt atgccgcctt tgagcgggca
    14821 accttcgaac agggcaagcc gacacagctg ctgatgctga cagataagca aatcgccgat
    14881 ttccagaaac attatcagac tgaagcggag cgttttcata ttctgccacc ggggatttat
    14941 cctgatcgta aatatagcca gcagccagct aatagccgtg aaatcttccg taagaagaat
    15001 ggaataaccg aacaacaata tttattgttg caggtcggtt cagacttcac gcgtaaaggt
    15061 gtcgatcgtt ccattgaagc acttgcttcg ttaccggatt cgctgcgcca caacacattg
    15121 ctatatgttg ttggacagga taaaccgcga aaatttgagg cgctggcaga aaaacgcggc
    15181 gtgcgcagta atgttcactt cttctcgggg cgcaacgatg tctcggaatt aatggcggcg
    15241 gcggatttat tactgcatcc tgcctaccag gaagcagcgg gaattgtgct actggaagcg
    15301 attactgcag gattaccggt actaacaaca gccgtttgtg gctatgcgca ttatattgtc
    15361 gacgccaatt gcggcgaggc tattgctgag ccattccgcc aggaaacatt gaatgagatt
    15421 ttacgcaaag cgttaacgca atcttcattg cgccaggcct gggcggaaaa tgcgcgacat
    15481 tatgctgata cacaagattt atacagtctg ccagagaaag cggcggatat cataacgggt
    15541 ggtctggatg gttgaactta aagagccgtt tgccacgtta tggcgcggta aagatccttt
    15601 tgaggaagtt aaaaccttgc agggtgaggt ttttcgtgaa ctggaaactc gccgcactct
    15661 gcgatttgaa atggcgggca aaagctattt tctcaaatgg catcgcggca cgaccctgaa
    15721 agagataatc aaaaatttac tctcattgcg gatgccagta ttaggcgcag accgcgaatg
    15781 gagtgcgatt catcgactgc gggatgtcgg cgttgatact atgtatgggg tggcatttgg
    15841 cgaaaaaggt attaatccgc tgagcagaac ctcgtttatt attaccgaag atctgacccc
    15901 aaccatcagt ctggaagatt actgtgctga ctgggcgacc aacccaccag atgttcgcgt
    15961 aaagcgtatg cttattaagc gtgtcgcgac gatggtgcgc gatatgcatg ctgcgggcat
    16021 taaccaccgt gactgttata tctgtcattt cctgctgcac ttgccttttt ccggtaagga
    16081 agaggagtta aaaatttcgg taattgacct acaccgggcg cagcttcgca cgcgcgttcc
    16141 acgtcgttgg cgcgataaag atcttatagg gctttatttt tcttcaatga atattggcct
    16201 gactcagcgg gatatctggc ggtttatgaa agtgtatttt gccaccccgc ttaaagacat
    16261 tctcaagcag gaacaaggac tgctgtcgca agcagaagca aaagccacaa aaatcaggga
    16321 aagaacgatt cgaaaatcgt tgtaatttcc ggagagaaat atgagtgccc actattttaa
    16381 tccacaagag atgatcaata agacaatcat cttcgatgaa aggccagcgg cgtcagtggc
    16441 atcatcattc catgttgctt atggcattga taaaaacttt ctttttggtt gtggtgtttc
    16501 aatcacgtca gttttgttac ataacaacga cgtgagtttt gttttccacg tttttattga
    16561 tgatatccct gaagccgata tccagcgttt agcccaattg gcgaaaagct atcgtacctg
    16621 tatccagatc catctagtaa attgtgaacg gcttaaggca ttaccgacga ccaaaaattg
    16681 gtctattgcc atgtatttcc gttttgtaat tgcagattac tttattgatc aacaagataa
    16741 gatcctttac ctggatgctg atatcgcctg tcagggaaac ttaaagccgc tgataacaat
    16801 ggatcttgcc aataacgttg ctgctgttgt tactgaacgc gatgctaact ggtggtcgtt
    16861 acggggtcaa agtctgcagt gtaatgaact tgaaaagggc tactttaatt caggtgtcct
    16921 gttaattaat acactagcgt gggcgcagga gtccgtttct gctaaagcga tgtcgatgct
    16981 tgctgataaa gccatcgttt cccgtttcac ctatatggat caagatatcc ttaatcttat
    17041 cctgttaggg aaagttaaat tcattgatgc taaatacaat acgcaattta gtttaaatta
    17101 tgaattaaaa aaatcatttg tttgtccaat taatgatgaa accgtattaa ttcattatgt
    17161 cggcccgaca aaaccctggc attactgggc cggttatcca agtgcgcaac cttttatcaa
    17221 agccaaagaa gcatcgccct ggaaaaatga accgttaatg cggccagtta actcaaacta
    17281 tgctcgttat tgcgccaagc ataattttaa acaaaataaa ccaattaacg ggataatgaa
    17341 ttatatttat tatttttatt taaagataat aaaatgaaat tgagaaaagt taaatgaatg
    17401 aatttataaa agaacggttt tcgtatttag cagataataa aaaagaaaac gccccagagc
    17461 taaatgtttc ctacggtatc gataagaatt ttttgtatgg tgctggcgtt tcaatttctt
    17521 ccgttttgat taataattca gatattaatt ttgtctttca tgttttcact gattatgtgg
    17581 atgatgatta tttaaagtca tttaatgaaa cagcaaaaca atttaatacc tcaattattg
    17641 tatatttaat tgaccccaaa tactttgctg atctgccgac gtcacagttt tggtcatacg
    17701 cgacatactt cagggtattg tcttttgaat atctgagtga aagtatttcc acactgctgt
    17761 atctggatgc cgatgttgtt tgtaaaggaa gcctgaaacc tctcacagaa attatattta
    17821 aagatgagtt tgctgcggtc attcctgaca atgatagtac tcaggcggca tgtgcaaaac
    17881 gcctcaacat tcccgaaatg aatggacgtt atttcaatgc aggcgttatc tatgtcaatc
    17941 ttaaaaaatg gcatgaagca aatttgacac cgtatttact caaactttta cgaggggaaa
    18001 ctaaatatgg ctctcttaaa tatttagatc aggatgcgtt gaatatcgca tttaatatga
    18061 ataatatcta ccttgcgaag gattttgata ctatttatac cctgaaaaac gaactttatg
    18121 atcgtagtca tcgaaagtat cagcaaacca ttaccgataa aacagtgttg attcactata
    18181 cagggataac taaaccatgg catagctggg ctggatatcc gtctgcatca tactttaata
    18241 tcgcgcgtga acaatctccc tggaagaaat atcctcttaa agaggcgcgg actgttgcag
    18301 aaatgcagaa acaatataag catctgtttg cccatggtga gtatataaaa ggcataactt
    18361 cattaattaa gtacaagctt aagaaataaa ttactcttat gattacaagt atacgttatc
    18421 gcggcttctc attttattac aaagataatg ataataaata taaagaaatc tttgatgaaa
    18481 tactggccta taattttaaa acagtaaaag tattatgtaa tattgatgat accaaagtat
    18541 cgttgattga tacgaaatat ggtcgctatg tttttaaagt ctttgctccg aaaacgaaaa
    18601 ggaatgaacg ttttttaaaa tcttttgtaa aaggtgacta ctatcagaat ttgatcgttg
    18661 aaaccgatcg tgtcagaagt gcaggtctta cttttcctaa tgatttttat tttctggctg
    18721 agcgtaaaat tttcaactat gccagtgttt ttatcatgct tatcgagtat gtcgagggcg
    18781 tagagctcaa tgatatgccg attattccag aaaatgttaa agcagaaatt aaggcttcga
    18841 tggaaaaatt gcatgcctta aatatgctat cgggcgaccc acaccggggt aactttatcg
    18901 ttagtaaaga tggtgtcagg ataattgacc tatccggtaa aagctgtacg gcagagcgta
    18961 aagctcgtga tcgtctggcc atggaacgtc acctgggtat tgccaacgaa ataaaagatt
    19021 atggctacta ttcagtaatc tacagaacca aactacgcaa atttattaaa aaattaaaag
    19081 gcaaagcgta aaccacacag tcaaaacgga accaacatgg atttattagc agagagtatt
    19141 actgaagtcg ctgtctctgg ggaaattgct aacaccgatc gtgtgttaaa tatcgcttac
    19201 ggtattgacc gtaacttttt atttggtgcg gcagtatcta tgcaatcagt tgttatgcat
    19261 aacccggacc ttgcggttaa gtttcatctc tttaccgact acattgatga agattatcta
    19321 caacgtgtta atgcttttac cagcaaaaat gctaacgttg aagtaataat ttataaagtc
    19381 tccaatgcct ttattgatat cttccccagc ctgaaacagt ggtcttatgc aacattcttc
    19441 cgtttagttg cgttccagta tttgagtgaa actattgaaa atctgttata tatcgatgct
    19501 gatgtcatct gtaaaggctc attagctgga ttgcttgata ttaattttga tgaggataag
    19561 ttcgcagctg ttattaaaga tgtgcctttt atgcaggaaa aaccagcgaa gcgtctggct
    19621 atagagggac ttccagggaa ttatttcaac gccggtgtag tatatctgca gcttgaagca
    19681 tgggcgaaaa atgattttat gaataaagcc attgctatgc tggcaagtga cccgcagcac
    19741 acgaagtata aatgccttga tcaggatatt ttaaatattc tgttctttgg tcattgtaat
    19801 tttattagcg gcgattatga ttgcttttat ggcattgact atgagttaaa aaataaaagc
    19861 gatgaagatt ataaaaagac cattaccgat gatactaagc tgattcatta tgttggcgta
    19921 acgaagccct ggaacgactg gacgaattat ccctgccaga agtattttaa tgaggcttat
    19981 caggcttctt gctggaatga tgtggcgttt attccagcca cgaatgaaaa gcagtatcaa
    20041 gtgaaatatc aacatgcaaa gaaaaatggt gatacgttta acgcttttat ttacttcatt
    20101 aaatttaaat taaataagta taaaagaaaa ctatttggat aataataaaa atcatggatg
    20161 tctgagttac aataataatt aaggatgagt actatcatat tttattagtt caggcaagag
    20221 aacacgatga gcaatgatta ccctttagta tctataataa taccgacgta taattcatct
    20281 gattacatta ctgaaactct aacgaaatta gaaaaacaaa cttacccaaa ttttgaaatt
    20341 gttattgtta atgatggttc taaagataac acatcaaacg ttttgagaga gtatgggtta
    20401 acccactctc gattaattat tgtcaataaa gaaaatggcg gtgtttcgtc tgccaggaat
    20461 acaggtatcc gcaaggcgca aggacagttt atatgtttta tggatgatga tgatgagata
    20521 gatcctaact atctgctgaa gatgtatacc agacaacatg agacgggagg ggatgcgatt
    20581 tattgtgggc tttatggcca ttatataaaa gatggtgtta cttactcacc tataaataca
    20641 gagtttaatg aaggatcttt acttttcgac tttttttata aaaaggttag attccatata
    20701 gggtgcttgt ttataagaaa acaacttctg gaagagaata atcttttttt tgatgaagat
    20761 ttacgactag gagaagatct tgattttatc tatcgactgc taattacatg cgatatgtat
    20821 gcggttccat attatatgta taagcataac tatagagaaa attccttaat gaactcatgt
    20881 agaaccatca ctcattatcg acatgagtca tttgcgcacg aaagaatcta ctcttctgtg
    20941 atgcagttat acaaaggtaa ccggaaagaa gaaattcata cattattgag tcaaaataga
    21001 gcttatcata aaactcgtta tttatggaat gttctactta atggtgattt taaactattg
    21061 aatcaattag ttgaaagcaa tgaaaaagaa ttaagatatt gtaatcttcc tggcaagaga
    21121 gataagagac gagcaaaaat attagcatca aaaaattata ttctctggag gatggtaaga
    21181 ctggtaaata gaaaaaagaa taaacgttag atcttgcatt aaataaccca tcctcgtagc
    21241 ataggttgaa attatatgtc gttttgttgg aatgaaatta attctggtat aaagtcttta
    21301 attcttatat tatgtatttt ttctttaatg actttgtctt tatgggatga tgttgcaaca
    21361 aagtttcttc atgcagctgg aattatatct gcattgtatt ttcttgcgac accaaaaaaa
    21421 acaataacta ataatcctac tttgttaatt ttcatctcat tatgtctttt gggtatcgta
    21481 aatatcatct ggtattcaca ttataaagtt tcaggctctg tttataccaa tgcatatcgt
    21541 ggcccaatgg aaactggaaa aattgccttg tgtagcgctt ttattttctt agttcttttt
    21601 gctaaaaatg agatgagaac aaaaataaaa tttgggaaac taattctgtt cgcatccctg
    21661 gcaacgcagt tacttttttt tgcgcatgcc atgtggcaac atttctattt aaacgtcgac
    21721 cgtgttgcat tatcagcttc ccacgctaca acagcaggct acatcatcct ttttccttct
    21781 ttactggcat caattctcat tttaaaatcc gactttagac ataaaacaac attatataca
    21841 attaacttca tgcttagctt atgtgctgtc atagtaactg agacgcgtgc agccatatta
    21901 gtgtttccat tctttgcgtt aatattaatc gtaatggata gttatattaa taagcgaatt
    21961 aattataagt tatattgttt tattgcgatt gcattattag caggtgtatt ttcttttaaa
    22021 gatacattgc ttatgagaat gaatgactta aataacgatt tagttaatta ttcgcatgat
    22081 aacaccagaa cttcagtcgg tgcccgtctg gcaatgtatg aagttggctt aaaaacatat
    22141 tctccaatag gacaatcact ggaaaaacgt gcagaaaaaa tacatgagct agaagaaaaa
    22201 gagcctagat tgagtggcgc tttacctttt gtagattctc atttgcataa cgatctcata
    22261 gatacgttat caacgcgtgg tattcctgga gttgtattaa caattttagc attttcagca
    22321 atactcatat atgccttaag aactgctaaa gaaccttata ttttaatctt gcttttttca
    22381 ctactggtag taggcctaag tgatgtaata ctcttttcta aaccggttcc gactgctgtg
    22441 tttgtcacca taatattgct ttgtgcttat tttaaagcac aatcagacca atatttatta
    22501 gataagtaat gaatatatga aataaaatca gcaaggaggc tgattttatt tcaaaattat
    22561 ctattaaggg gttgtaattt aaatcatagc agcgttttca gcgttttctt caatgaatcg
    22621 cttaacagca tttgctgtca attgagacaa ctcattcccc ggagccctac aaaccatttg
    22681 attcttccca tacccaccaa ttaatcccgg atcggttggt ccataaaccg tgatattggg
    22741 tctatccagt gccgccgtta aatggcttaa ccccgtatcc accgacacta caaatttagc
    22801 cccggccagc acgcgggcaa cgccttccag actcatcttc ggcaatactt caacataatc
    22861 aaatccttcc gccagtcgtt tcgcccgttc ttcctcatgc ggcgcgcccc acggaagttt
    22921 aatccgtatt cctgaatcag ccagtaaacc aatcaattct cgccagtgtt cttccggcca
    22981 gtgtttatca tcacgggtcg tcgcatgaag aaatacggca tattcgccag catctgtagg
    23041 caggttcgtc agaaaatgct gtgcgatagc ataatcgccc tgggtttgcg gtttgctata
    23101 gcccaaactt ttggcaaaca gttcgcgggt gcgttctacg gcgtgctgct gttttgcaat
    23161 atgatgctta caattgtaaa acaggctggc taaaggttcg cgagcggttt gccagtccaa
    23221 tccatgcttt acgccatgcg ccagacgtgt caccagtgcc gcgcttttta ccagcccctg
    23281 agcgtcgata actgcgtcat agttctctgc ttgtagcgct tcacgaaacg ctttgcgttc
    23341 agcttttatg ggggccgaga accaggcttt acgccagcga cgtattgcca caggaataac
    23401 tcgctcaacg gcagcgtgcc aggaaggaat ctgtgcgaac ccttcttcca ccacccagtc
    23461 aaacttaatc cctgggattg cctgctgggc atcagtgagt gcgggcaacg tatggagaac
    23521 atcgcccatc gacgatgttt taacgatcaa aacccgcatc cgtcaggctt cctcttgtaa
    23581 caatagcgtg ttgagttctt ccagtacgcg ctggggagta atgtcgatca agctctggtg
    23641 ataaccctcc gcagcgtcac ctttacgcac tttgtgatag ccggtaatca gacggatcac
    23701 gcgcgcttta tgggatagcg gcggtgtgaa gtccgggcta cttggaccat acagggcaac
    23761 cagcggacga ttgagcgccg ccgcaacgtg catcaggcca gaatcgttag tgacaatggc
    23821 tttacaggct gcaatcagga taaccgcttg atcaagctgt gtttcccccg ccaggttccg
    23881 acaccatgcc tgctgctcgg tattcaaagc ggcaagaatc tcattgcccg cttcatgatc
    23941 tttcgcagag ccaaacagaa ccacctgata accttcatca atcagctgct ttgccagttc
    24001 cgcatagtgg tagtgtggcc agcgttttgc cggaccaaac tccgcacccg ggcaaaagcc
    24061 aatcatcgga cgttctgatg aaagcgaaaa ttgattacag gtatatgatt tttcaccttc
    24121 gctcacctgc aactgcggcc ataacaatgg ctgcggcaga tcttgtgcgg tacgcataat
    24181 gcctttgtca taggccagcg cgacatagcg ttccaccatt agcggccagg cttctttatc
    24241 gagcacgcgt acatcgttga gtaaaccgta gcgcatctcg ccgcgccagc cggtgcgatg
    24301 aggaataccc gcgaagaaag gcactaatgc agatttgaag gagttgggta agacgtaggc
    24361 gcggtcgtag cgcttttcac gcaggctatg acccagtttg cggcgttcgc cgatttccag
    24421 cgctccgtga ccgagaggca tagggatagc ttcgttaact tccggcatcc gcgataataa
    24481 tggacggcac catgccggtg ccatcacatc gattatcgcc tggggatagc gcgcctggag
    24541 cgtgcgatag agactttgcg acatcatcat gtcgccaacc caagacgggc cgatcaccag
    24601 tattttcatg cagagctctt atgcgtcgcg attcagccag gccatgtatt ccgttacacc
    24661 ttcagcaacg gttttgaacg gtttgtcgta acccgccgcg cgcagatttg tcagatctgc
    24721 ctgagtgaac gcctggtagc ggcctttcag cttatccggg aacggaatgt attcgatctg
    24781 gcctttcttg tgataagcca gagtagcatc tgctacggcc tggaaggatt ccgcacgacc
    24841 agtaccgagg ttgaagatac cggaaacgcc attttccagg aaccacaggt ttacatctgc
    24901 cacgtcgccc acatagacga agtcacgttt gaagttctcg ctaccttcaa acagcttcgg
    24961 tgattcaccg ttgttaagct gagtgttgag atggaaagcg acgctcgcca tgctgccttt
    25021 atggccttca cgcggtccat aaacgttgaa atagcggaag ccaacaatct gcgagttcgc
    25081 ttcaggcagg atttggcgaa catattcatc aaacaggaat tttgagtaac cgtagacgtt
    25141 caacggtttt tcgtactcgc gggattcaat aaagtcggag gtgcgtccgc cgtaggtggc
    25201 tgcggaagaa gcgtacagga acgggatttc gcgctccagg cagtagtgca gcagctcctt
    25261 ggagtattga tagttgttat ccatcatata cttgccgtcc cactcggtgg tggaagagca
    25321 tgcgccttcg tggaaaatcg cttcgacatc gccgaactct tcgccagcca taatctggat
    25381 caggaagtct tccttatcca tatagtccgc gatatccaga tccaccaggt tcacaaactt
    25441 ggtgccgtct ttcaggttgt ccaccaccag aatatcggtg atgcctttat cattcagggc
    25501 cttaacgatg ttgctgccga taaagcccgc gccgccggta acgatgatca taactgtaac
    25561 cttcgaatta tggagtcaga gacaatctca gacacgaata cttctatcat atcactatac
    25621 ggcgttggct tcagccattc gccaaaagtg agattgatgg acgttattta tcctgaattt
    25681 tgcagaagtg ttaacgcgtc atctcgtcgc gacgtataag tttgggtaat atgtgctgga
    25741 atttgccctg tctggagaat cgcaatgcgt ggagaatttt atcagcagtt aaccaacgat
    25801 ctggaaaccg cacgggcgga agggttgttt aaagaagagc gcattattac gtctgcgcag
    25861 caagcagata tcactgtggc tgatggaagc cacgtcatta acttttgtgc caacaactat
    25921 ctcgggctgg cgaatcatcc ggatctgatt gcggcagcaa aggcgggaat ggattctcac
    25981 ggtttcggca tggcttcggt gcgttttatt tgcggcactc aggacagcca taaagagctt
    26041 gaacaaaaac tggcggcatt cctggggatg gaagatgcga ttctctactc ttcctgcttt
    26101 gatgctaacg gtggactgtt tgaaacgctg ctgggtgcgg aagacgccat tatctccgac
    26161 gcactgaacc acgcgtctat tattgatggt gtgcgtctgt gcaaagctaa acgctatcgc
    26221 tatgccaaca acgatatgca ggagctggaa gcacgtctga aagaagcgcg tgaagccggt
    26281 gcgcgtcatg tgctgattgc caccgatggt gtgttctcaa tggacggcgt gattgccaac
    26341 ctgaaaggcg tttgcgatct ggcagataaa tacgatgcct tggtgatggt ggatgactcc
    26401 cacgcggtcg gttttgtcgg tgaaaatggt cgtggttccc atgaatactg cgatgtgatg
    26461 ggccgggtcg atattatcac cggtacgctt ggtaaagcgc tgggcggggc ttctggtggt
    26521 tataccgcgg cgcgcaaaga ggtggttgag tggctgcgcc agcgttctcg tccgtacctg
    26581 ttctccaact cgctggcacc ggccattgtt gccgcgtcca tcaaagtact ggagatggtc
    26641 gaagcgggca gcgaactgcg tgaccgtctg tgggcgaacg cgcgtcagtt ccgtgagcaa
    26701 atgtcggcgg cgggctttac cctggcggga gccgatcacg ccattattcc ggtcatgctt
    26761 ggtgatgcgg tagtggcgca gaaatttgcc cgagagctgc aaaaagaggg catttacgtc
    26821 accggtttct tctatccggt cgttccgaaa ggtcaggcgc gtattcgtac ccagatgtct
    26881 gcggcgcata cccctgagca aattacgcgt gcagtagaag cattcacgcg tattggtaaa
    26941 caactgggcg ttatcgcctg aggatgtgag atgaaagcgt tatccaaact gaaagcggaa
    27001 gagggcatct ggatgaccga cgtccctgta ccggaactcg ggcataacga tctgctgatt
    27061 aaaatccgta aaacagccat ctgcgggact gacgttcaca tctataactg ggatgagtgg
    27121 tcgcaaaaaa ccatcccggt gccgatggtc gtaggccatg aatatgtcgg tgaagtggta
    27181 ggtattggtc aggaagtgaa aggcttcaaa atcggcgatc gcgtttctgg cgaaggccat
    27241 atcacctgcg gtcactgtcg caactgtcgt ggcggtcgta cccatctgtg ccgcaacacg
    27301 atcggcgtcg gcgttaaccg tccgggctgc ttcgccgaat atctggtgat cccggcgttc
    27361 aacgccttca aaatcccaga caatatctcc gacgacctgg cttccatttt tgatcccttc
    27421 ggtaacgccg tgcataccgc gctgtcgttc gatctggttg gcgaggatgt gctggtctct
    27481 ggtgcaggtc cgataggtat tatggctgcg gcggtggcga aacacgttgg tgcacgcaat
    27541 gtggtgatca ctgatgttaa cgaataccgc cttgagctgg cgcgcaaaat gggtatcacc
    27601 cgtgcggtta acgtcgcgaa agaaaacctt aatgatgtga tggctgaact gggcatgacc
    27661 gaaggctttg atgtcggtct ggaaatgtcc ggtgcgccgc cagcgtttcg taccatgctt
    27721 gacaccatga accacggcgg ccgtattgcg atgctgggta ttccgccgtc tgatatgtct
    27781 atcgactgga ccaaagtgat ctttaaaggc ttgttcatta aaggtattta cggtcgtgag
    27841 atgtttgaaa cctggtacaa gatggcggcg ctgattcagt ctggcctcga tctctcgccg
    27901 atcattaccc atcgtttctc tatcgatgat ttccagaagg gctttgacgc tatgcgttcg
    27961 ggccagtccg ggaaagtaat tctgagctgg gattaacacg aacaagggct ggtattccag
    28021 cccttttatc tggggataat ctgttgaata tgtaaaatcc tgtcagtgta ataaagagtt
    28081 cgtaattgcg ctgatctctt atatagctgt tctcattatc tctctaccct gaagtgactc
    28141 tctcacctgt aaaaataata tctcacaggc ttaatagttt cttaatacaa agcctgtaaa
    28201 acgtcaggat aacttcagag gtcgtcggta atttatgatg aacagcacca ataaacttag
    28261 tgttattatt ccgttatata atgcgggcga tgatttccgc acttgtatgg aatctttaat
    28321 tacgcaaacc tagactgctc tggaaatcat tattattaac gatggttcaa cggataattc
    28381 tgttgaaata gcaaagcatt acgcagaaaa ctatccgcac gttcgtttgt tgcatcaggc
    28441 gaatgctggc gcatcggtag cgcgtaatcg tgggatcgag gtggcgacgg gcaaatatgt
    28501 cgcttttgtc gatgctgacg atgaggtcta tcccaccatg tacgaaacgc tgatgaccat
    28561 ggcgttagag gacgacctcg acgtggcgca gtgcaacgct gactggtctt ttcgtgaaac
    28621 gggagaaacc tggcaatcca tccccagcga tcgccttcgc tcaaccggcg tattaaccgg
    28681 cccggactgg ctgcggatgg ggctttcttc gcgccgttgg actcacgttg tctggatggg
    28741 ggtttatcgc cgtgatgtta ttgttaaaaa taacattaaa tttattgccg gattacatca
    28801 tcaggatatt gtctggacaa cagaattcat gtttaacgcg ctgcgtgcgc gatataccga
    28861 gcaatcatta tataaatatt atctgcataa tacgtcagtg agtcggttgc atagacaagg
    28921 gaataaaaac cttaattatc aacgtcacta tattaagatt acccgcctgc tggagaaatt
    28981 aaatcgaaat tatgccgaca aaattacgat ttatccggaa tttcatcagc aaataactta
    29041 cgaagcattg cgtgtttgcc atgcggtgcg caaagagccg gatattctta cccgccaacg
    29101 gatgattgcc gagatattta cttccggtat gtataagcgc ctgattacca atgtgcgcag
    29161 cgtgaaggtc ggttaccagg cgttactgtg gtctttccgc ttatggcaat ggcgcgacaa
    29221 aacgcggtcg caccatcgca ttacgcgtag cgcctttaat ttgcgctagc gttaaacttc
    29281 gccgcttcgg gctgtttgcc ccagccttgc cactgatgct ggaagtaaac gatcagcgtg
    29341 ctctggctga tgctttcgct taatacttca aagaagcgat tagcataaac aggttctatc
    29401 ggtttcttcg gtttgcacag cttcacgcca cggaacggat tacgcggtgc atcaggcaca
    29461 gcgtttttcg gcggtgtaga agtatcaacc tgcggttcat tcagcaagct gctggctttc
    29521 accagcgtaa tgtctggcgg caggttataa accatctgtt gtagcacgcg taccgttaaa
    29581 gggtgaggat gcccaatggc aatggttgaa ccgttgcgac gcgccagatc aattgcgcga
    29641 ttaaattgca cacggatgtc cgcttcgttc tgcgaatcgt cgaggaacac cttccgttta
    29701 ataaccttca cgccagtacc ttgcgcggcg cgcatcgcct gggtattacc gatggttacg
    29761 ctgtcgagga agtaaagatt gtaacgctcc agtgcctgca tcactttctg cataccaaac
    29821 aggttagagg tcatcttgct acccatgtgg ttgttgatcc ccacggcata gggcacgtta
    29881 ttgaccgcac tacgaataat gcgctcaatt tcgtcgctgc tcatctccgg gcgcagcgta
    29941 tttttctcca gcggctgttt actcagtggt gccatcggga gatgaatcaa cacttcgtgc
    30001 ccgctgttat gcgctttggt cgccatctct ctggcgtgcg gtgaatcggg taatacagcg
    30061 acggagatag cggagggcat cgccagcacc tggttttcgt tgtgcgggcg atacccaaaa
    30121 tcatcaatga cgatggcaag tttgccagca agtacggggg aggagagcgc caacagagcg
    30181 gcaaatgcaa gaacgttacg acgaaatgga aacaaaactt atcttcccaa ccacggctgt
    30241 ggattgaccg cctgaccctg gcggcgaatt tcgaaataga gtgaaggccg accctgaccg
    30301 ccactgctgc ccaccagtgc aattggctgg cccgcgcgaa cctgcgaacc aacgctcacc
    30361 agtgcgctct gattatagcc gtaaagactc atgtcgcctt taccgtgctc aaccaccacc
    30421 accagaccgt aaccttgcag ccagtcagcc agaatcactc gaccgtcggc aattgcttta
    30481 acttcagtac cttcagaggc accgataacc atccctttcc agcgtaattc accctgtagc
    30541 tgctcgccat agcgatgcag cgtcggcccg cgaactggcc agaatgcctg accacgcggc
    30601 gcacccagac caccagttcg ggacatcagc gatttttcgc tttcggtcgg tttgtaggtg
    30661 gtgcctttgc gcgtcgcttc tttctggcgg tcgcgaaccg cctgggcctc acgcgcttct
    30721 cgttcagcac gcgctttcgc cgcggcttcc gcacgggcaa tgctgttacg cagacgggat
    30781 tcgttggcac gcagttcact tagctgctgc tgaccttgct ggatggaaga ttccagcccc
    30841 gccagcgtct ttttacgctc gttcagagcc tgagtcagtt tcgcctgttg ggcgcgctgt
    30901 tcatataaca gcgtttgttg ctcgctttgt ttctcttcca gttcagcacg ctgcatggcg
    30961 acttcttcac gcgtttgctt caactgggca atggtttctt gtcgcgcctg gttgagatag
    31021 ccgaaataag cctgtaaacg ctgtccacac tggctttctt caccgctgag aattagctga
    31081 ataccggtat gctcgccctg acggaatgcg gcatccagtt gtgcggcgag gctgcgctcc
    31141 tgggcggctt tttgctgctc cagtttggca atcgacgcgt tcatctcatc aatctgttta
    31201 ttgagttgat tgagcgtgtt ttgcgtttcg cgcagcttac gggtggcttc agagatcgct
    31261 tcttcctgct ttttcaattg tgcgagcagg cttgcgcgtt gttgttgctt ttggcgtacc
    31321 gcgcgctctt ttgcggcgat atcggcctga atagatttga gttggtcacg ctcatccgcg
    31381 tgggcggaaa aggcgcacaa caatacgcca gcgctaagaa cgctggcgta gatgatgggc
    31441 ctgattgcaa acctgcgcgg tttcacggcc cgtgtcatgg tattaatcgc ctttcccctc
    31501 atggggaggg attattccac gatgaacagc ggcttaccag tcatctcttg cgggatttcc
    31561 atacccatca gcgacaacat ggtcggcgcg atgtcagaaa gtttgccgcc tgcaaccgct
    31621 ttcacgttct tatcaccaac gtaaatcagc ggaactggca ggttggtgtg tgccgtgtgt
    31681 gcctgacccg ttgccggatc gcgcatctgt tcagcgttac cgtggtcagc ggtgatcagc
    31741 agttgtccac ccacggactc aaccgctttc gcgacttctt ccacgcagtg atccagtgct
    31801 tcaaccgctt taaccgccgc ttccatcacc ccggtgtgac ctaccatgtc gccgttcgga
    31861 tagttacaga taatggtgtc gtatttgccg ctcttgatgg ccgcaaccag tttttcggtc
    31921 agctctgcgg agctcatttc cggttgcaga tcgtaggtag ccactttcgg tgagttgatc
    31981 agaatgcgat cttcgccttt gaatgactct tctacgccac cgttgaagaa gaaagtaacg
    32041 tgggcatatt tttcggtttc ggaaatacgc aactgagttt tgtcgttttt cgccatccac
    32101 tcgccgaagg tgttaaccag ggaagcgggt gggtaagcaa ccgcagtttt gatgtcagcg
    32161 gcgtattcgg tcagcatcac gaaatcgacg ttaaccactt tcttacgcgc gaagccgtcg
    32221 aaatctgcgt ttacgaatgc acgagtgatt tcgcgcgcgc ggtcagcacg gaagttcatg
    32281 aaaatcagcg catcgccgtc ttccattgcc gcatctggct gaccttctgc acgaataacg
    32341 gtcgctttca cgaactcgtc gttttcgtcg cgagcataag ctgcctgcaa accagcaacg
    32401 gcagtatcgg cctggaactc accctgcgcc agagtcagca ggtcataggc tttttcaacg
    32461 cgatcccaac ggttatcgcg gtccatcgcg tagtaacgac caatgatgga cgctacgcgg
    32521 cctttaccca gcgcagcaaa tttctcttca aattttttca gcgaggattc agcactgcgc
    32581 ggcggggtgt cgcgaccgtc aaggaatgcg tgcaggtaga ttttttctgc gccgcgttca
    32641 gctgccagtt ctaccatcgc catgatgtga tcttcgtggc tgtgtacgcc gcctgcggag
    32701 agcagaccca taatgtgtac tgctttacct gcgtttttcg ctttatctac cgcgccagtc
    32761 agcactggat tagcaaagaa agcgcgatct ttgatttcaa cgtccagacg agtcaggtcc
    32821 tgatacacga tgcggccggc acccaggtta acgtggccta cttcggagtt acccatctga
    32881 cggtcaggca gaccgacttc cagaccggaa gcgtcgatca gggtatgcgg acgattggcc
    32941 cacagtgcat ccattaccgg ggttttagca ctaaaaatgg cgttatcctg ctgttcttca
    33001 cgatagccat agccatccag aatcaccagt accataggtt ttttagaaac cgacattgcg
    33061 acaacctcat actcaagagt caaaatttgc gtaattttac tacagctgaa tcgataaaat
    33121 agcctctgaa gatcaaaata tacgaccgct cgcggcaagc cgatgccaga tttgcgcttt
    33181 tttttcgtcg tgccccgcaa aattgcattc cagttaacgc gctggctgta tttgccgcac
    33241 cgcgcaggta tactcctttc ctggtttttt taatcactac gtcgggagtt gttacccccc
    33301 atgcaagaaa ttatgcaatt tgttggccgt catcccatac tgagtatcgc ttggatcgcg
    33361 ttactggtgg cggttcttgt gactacgttt aagagcctga cctcgaaagt gaaggtgatt
    33421 actcgtggtg aagctacgcg tctgatcaac aaagaagacg ctgtggttgt ggatttacgt
    33481 cagcgtgatg acttccgtaa aggccatatc gcaggttcta tcaatctgtt gccgagcgaa
    33541 atcaaagcca acaatgttgg tgagcttgag aagcacaaag acaaaccggt tatcgtggta
    33601 gacggttctg gcatgcagtg ccaggagcct gcaaacgcgc tgacgaaagc tggttttgcg
    33661 caagtattcg tgctgaaaga gggcgttgct ggctgggctg gcgaaaactt gcctctggtg
    33721 cgcggcaaat aatttacctg tcgtctttca tgatgcaggc cgttagctgc aattaggccc
    33781 ccagcgactt attgttataa gcttctgggg acactccatt ttgcagccgc cctgcaacat
    33841 gaaatttcag ggtaaaaaaa caggagctaa attatggcca atgttgaaat ctataccaaa
    33901 gaaacctgcc cgtattgcca tcgtgcaaaa gcactgctga gcagcaaggg cgtgagtttt
    33961 caggagttgc cgatcgatgg caatgccgcc aagcgtgaag agatgatcaa acgcagcggt
    34021 cgcaccacgg ttccccagat ttttattgac gcacagcaca ttggcggctg tgatgacttg
    34081 tatgcattgg atgcacgtgg tggactggat cccctgctga aataacgtgt gaacgttggc
    34141 attacattgc gcagtattta aggacaacac ttaagggttt tctacacatg tcagaacaaa
    34201 acaacactga aatgactttc cagatccaac gtatttatac caaggatatc tctttcgaag
    34261 cgccgaacgc gccgcacgtt ttccagaaag attggcaacc agaagttaaa cttgatctgg
    34321 atacggcatc ttcccaactg gcagatgacg tatacgaagt ggtactgcgt gttaccgtaa
    34381 cggcctccct gggcgaagaa accgcgttcc tgtgtgaagt tcagcagggc ggtattttct
    34441 ccatcgcggg tatcgaaggc acccagatgg cacattgcct gggcgcatac tgcccgaaca
    34501 ttctgttccc gtatgctcgt gagtgcatca ccagcatggt atcccgcggt acattcccgc
    34561 aactgaacct tgcgccggtt aacttcgatg cgctgttcat gaactatttg cagcagcagg
    34621 ctggcgaagg tactgaagaa catcaggatg cctgatgaac caacgtaatg cttcaatgac
    34681 tgtgatcggt gccggctcgt acggcaccgc tcttgccatt accctggcaa gaaatggcca
    34741 cgaggttgtc ctctggggcc atgaccctga acatatcgca acgcttgaac gcgaccgctg
    34801 taacgccgcg tttctccccg atgtgccttt tcccgatacg ctccatcttg aaagcgatct
    34861 cgccactgcg ctggcagcca gccgtaatat tctcgtcgtc gtacccagcc atgtctttgg
    34921 tgaagtgctg cgccagatta aaccgctgat gcgtcctgat gcgcgtctgg tgtgggcgac
    34981 caaagggctg gaagcggaaa ccggacgtct gttacaggac gtggcgcgtg aggccttagg
    35041 cgatcaaatt ccgctggcgg ttatctctgg cccaacgttt gcgaaagaac tggcggcagg
    35101 tttaccgacg gctatttcgt tggcctctac cgaccagacc tttgccgatg atctccaaca
    35161 attgctgcac tgtggcaaaa gtttccgcgt ttacagcaac ccggatttca tcggtgtgca
    35221 gcttggcggt gcggtgaaaa acgtcattgc cattggcgcg gggatgtccg acggtatcgg
    35281 ttttggtgcg aatgcgcgta cggcactgat cacccgtggg ctggctgaaa tgtcgcgtct
    35341 tggcgcggcg ctgggtgccg agcctgccac ctttatgggc atggcggggc tgggcgatct
    35401 tgtgcttacc tgtaccgaca accagtcgcg taaccgccgt tttggcatga tgctcggtca
    35461 gggcatggat gtacaaagcg cgcaggagaa gattggtcag gtggtggaag gctaccgcaa
    35521 tacgaaagaa gtccgcgaac tggcgcatcg cttcggcgta gaaatgccaa taaccgagga
    35581 aatttatcaa gtattatatt gcggaaaaaa cgcgcgcgag gcagcattga cgttattagg
    35641 tcgtgcacgc aaggacgagc gcagcagcca ctaaccccag ggaacctttg ttaccgctat
    35701 gacccggccc gcgcagaacg ggccggtcat tatctcatcg tgtggagtaa gtaatgtcgt
    35761 gtgaagaact ggaaattgtc tggaacaata ttaaagccga agccagaacg ctggcggact
    35821 gtgagccaat gctggccagt ttttaccacg cgacgctact caagcacgaa aaccttggta
    35881 gtgcactgag ctacatgctg gcgaacaagc tgtcatcgcc aattatgcct gctattgcta
    35941 tccgtgaagt ggtggaagaa gcctacgccg ctgacccgga aatgatcgcc tctgcggcct
    36001 gtgatattca ggcggtgcgt acccgcgacc cggcagtcga taaatactca accccgttgt
    36061 tatacctgaa gggttttcat gccttgcagg cctatcgcat cggtcactgg ttgtggaatc
    36121 aggggcgtcg cgcattggca atctttctgc aaaaccaggt ttctgtgacg ttccaggtcg
    36181 atattcaccc ggcagcaaaa attggccgtg gcattatgct cgaccacgcc acgggcatcg
    36241 ttgtgggtga aacggcggta attgaaaacg acgtatcgat tctgcaatct gtgacgcttg
    36301 gcggtacggg taaatctggt ggtgaccgtc acccgaaaat tcgtgaaggt gtgatgattg
    36361 gcgcgggcgc gaaaatcctc ggcaatattg aagttggtcg cggcgcgaag attggcgcag
    36421 gttccgtggt gctgcaaccg gtgccgccgc atacaaccgc cgctggcgtt ccggctcgta
    36481 ttgtcggtaa accagacagc gataagccat caatggatat ggaccagcat ttcaacggta
    36541 ttaaccatac atttgagtat ggggatggga tctaatgtcc tgtgatcgtg ccggatgcga
    36601 tgtaatcatc tatccggcat acagtaacta atctctcaac aacgctcccg gatatcccag
    36661 ctgccgccag gcttcataca ccactaccga caccgcattg gacagattca tgctgcggct
    36721 gtccggcacc atcggaatgc gaattttttg ttcagcgggc agggcatcaa gaatgctcgc
    36781 tggcaggccg cgtgtttccg ggccgaacat cagataatcg ccatcctgat agcttacggc
    36841 gctgtgagca ggcgtacctt tcgtggtgag ggcaaacagg cgctggggat tttctgcttc
    36901 gaggaacgcg cgatagtcat gatgacgcgt aacggcggta aactcgtgat agtccagccc
    36961 cgcgcggcgc aggcgcttat cgtcccaggc aaatcccatc ggttcgatga tatgcagacg
    37021 aaagccggta ttagcgcaaa gacggatgat gttgccagta tttggcggaa tttctggttc
    37081 gtaaagtacg atgtttagca tactgccccc ttagtgcggg ggcaggatag cagaaaattg
    37141 gtgaaccgtg cggccttttc ccctcacccc ggccctcccc ctgtctcttg atcaggagat
    37201 ctgatcaaga gacagctccc tgagggagag ggttaggggg gtgcccctat taagttgtca
    37261 agcatgttat gacccctgcg gggtataaaa agtcccgtcg cgcatcatgg cgaacagaa
//
LOCUS       DAJVSY010000019        36832 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.019, whole genome shotgun sequence.
ACCESSION   DAJVSY010000019 DAJVSY010000000
VERSION     DAJVSY010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 36832)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36832)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36832
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.019"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            584..670
                     /gene="leuL"
                     /locus_tag="OQQ19_000885"
     CDS             584..670
                     /gene="leuL"
                     /locus_tag="OQQ19_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leu operon leader peptide"
                     /protein_id="HCS1802601.1"
                     /translation="MTHIVRFIGLLLLNASSLRGRRVSGIQH"
     gene            763..2334
                     /gene="leuA"
                     /locus_tag="OQQ19_000886"
     CDS             763..2334
                     /gene="leuA"
                     /locus_tag="OQQ19_000886"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016831521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HCS1802602.1"
                     /translation="MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVME
                     VGFPVSSPGDFESVQTIARQVKNSRVCALARCVEKDIDVAAESLKVAEAFRIHTFIAT
                     SPMHIATKLRSTLDEVIERAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVEAAIN
                     AGATTINIPDTVGYTMPFEFAGIISGLYERVPNIDKAIISVHTHDDLGLAVGNSLAAV
                     HAGARQVEGAMNGIGERAGNCSLEEVIMAIKVRKDILNVHTAINHQEIWRTSQLVSQI
                     CNMPIPANKAIVGSGAFAHSSGIHQDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGR
                     AAVKHRMDEMGYKESEYNLDNLYDAFLKLADKKGQVFDYDLEALAFIGKQQEEPEHFR
                     LDYFSVQSGSNDIATAAVKLACGEEVKAEAANGNGPVDAVYQAINRITDYNVELVKYS
                     LTAKGHGKDALGQVDIVANYNGRRFHGVGLATDIVESSAKAMVHVLNNIWRAAEVEKE
                     LQRKAQHNENNKETV"
     gene            2334..3425
                     /gene="leuB"
                     /locus_tag="OQQ19_000887"
     CDS             2334..3425
                     /gene="leuB"
                     /locus_tag="OQQ19_000887"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HCS1802603.1"
                     /translation="MSKNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYD
                     VGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHF
                     KLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK
                     AFDTEVYHRFEIERIARIAFESARKRRHKVTSIDKANVLQSSILWREIVNEIATEYPD
                     VELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG
                     FGLYEPAGGSAPDITGKNIANPIAQILSLALLLRYSLDADDAACAIERAINRALEEGI
                     RTGDLARGAAAVSTDEMGDIIARYVAEGV"
     gene            3428..4828
                     /gene="leuC"
                     /locus_tag="OQQ19_000888"
     CDS             3428..4828
                     /gene="leuC"
                     /locus_tag="OQQ19_000888"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HCS1802604.1"
                     /translation="MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGL
                     RAHGRPVRQPGKTFATMDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNH
                     PYQGIVHVMGPEQGVTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQ
                     GRAKTMKIEVQGKAAPGITAKDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMT
                     LCNMAIEMGAKAGLVAPDETTFNYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTV
                     VTLQAEEISPQVTWGTNPGQVISVNDNIPDPASFADPVERASAEKALAYMGLKPGIPL
                     TEVAIDKVFIGSCTNSRIEDLRAAAEIAKGRKVAPGVQALVVPGSGQVKAQAEAEGLD
                     KIFIEAGFEWRLPGCSMCLAMNNDRLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMA
                     AAAAVTGHFADIRNIK"
     gene            4839..5444
                     /gene="leuD"
                     /locus_tag="OQQ19_000889"
     CDS             4839..5444
                     /gene="leuD"
                     /locus_tag="OQQ19_000889"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HCS1802605.1"
                     /translation="MAEKFIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLF
                     NDWRFLDEKGQQPNPDFVLNFPQYQGASILLARENFGCGSSREHAPWALTDYGFKVVI
                     APSFADIFYGNSFNNQLLPVKLSDAEVDELFALVKANPGIHFDVDLEAQEVKAGEKTY
                     RFTIDAFRRHCMMNGLDSIGLTLQHDDAIAAYEAKQPAFMN"
     gene            complement(5493..6575)
                     /locus_tag="OQQ19_000890"
     CDS             complement(5493..6575)
                     /locus_tag="OQQ19_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1802606.1"
                     /translation="MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREV
                     GAQPFWIGLFYTVNTIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNAPLFAFNRH
                     YLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSIAAGIFTLSLVLIAFML
                     PSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSELGLPD
                     KLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFHSRMALM
                     TLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSW
                     GHFAVYWVIAVISVVALFLTAKVKDV"
     gene            complement(6677..6808)
                     /gene="sgrT"
                     /locus_tag="OQQ19_000891"
     CDS             complement(6677..6808)
                     /gene="sgrT"
                     /locus_tag="OQQ19_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose uptake inhibitor SgrT"
                     /protein_id="HCS1802607.1"
                     /translation="MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES"
     gene            6897..8552
                     /gene="sgrR"
                     /locus_tag="OQQ19_000892"
     CDS             6897..8552
                     /gene="sgrR"
                     /locus_tag="OQQ19_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator SgrR"
                     /protein_id="HCS1802608.1"
                     /translation="MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLL
                     NTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKAT
                     VRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEE
                     NGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIA
                     DIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRN
                     TTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEG
                     CYYLLFDSRTHRGANQQVRDWVNYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHART
                     IKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIES
                     DIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVA
                     SKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP"
     regulatory      8586..8685
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            8716..9699
                     /gene="thiB"
                     /locus_tag="OQQ19_000893"
     CDS             8716..9699
                     /gene="thiB"
                     /locus_tag="OQQ19_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706021.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate binding
                     subunit"
                     /protein_id="HCS1802609.1"
                     /translation="MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAF
                     EADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVA
                     ADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRT
                     STPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTS
                     PAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIP
                     TGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISGWQRAVSR"
     gene            9675..11285
                     /gene="thiP"
                     /locus_tag="OQQ19_000894"
     CDS             9675..11285
                     /gene="thiP"
                     /locus_tag="OQQ19_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine/thiamine pyrophosphate ABC transporter
                     permease ThiP"
                     /protein_id="HCS1802610.1"
                     /translation="MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWV
                     AVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLIL
                     PVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQ
                     ALENIPDEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLG
                     GGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQ
                     GWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTS
                     LRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFL
                     LLNNTIGLQQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRL
                     KVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGA
                     VTALILLLLCFLLFTVIEKLPGRNVKTD"
     gene            11269..11967
                     /gene="thiQ"
                     /locus_tag="OQQ19_000895"
     CDS             11269..11967
                     /gene="thiQ"
                     /locus_tag="OQQ19_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706019.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter ATP-binding protein
                     ThiQ"
                     /protein_id="HCS1802611.1"
                     /translation="MLKLTDITWLYQHLPMRFSLTVERGEQVAILGPSGAGKSTLLNL
                     IAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKL
                     NAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSAL
                     DPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTEELL
                     SGKASASAILGITG"
     gene            complement(12080..12844)
                     /locus_tag="OQQ19_000896"
     CDS             complement(12080..12844)
                     /locus_tag="OQQ19_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1802612.1"
                     /translation="MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAG
                     LGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTE
                     HALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGI
                     LAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLL
                     WLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGV"
     gene            complement(12930..13808)
                     /gene="araC"
                     /locus_tag="OQQ19_000897"
     CDS             complement(12930..13808)
                     /gene="araC"
                     /locus_tag="OQQ19_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose operon transcriptional regulator AraC"
                     /protein_id="HCS1802613.1"
                     /translation="MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKG
                     YILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRA
                     YWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLL
                     LRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ
                     LGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEF
                     RAGCEEKVNDVAVKLS"
     gene            14147..15847
                     /gene="araB"
                     /locus_tag="OQQ19_000898"
     CDS             14147..15847
                     /gene="araB"
                     /locus_tag="OQQ19_000898"
                     /EC_number="2.7.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulokinase"
                     /protein_id="HCS1802614.1"
                     /translation="MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCD
                     APNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVL
                     ALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKI
                     LHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLP
                     PASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCH
                     MGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAG
                     QSAFGDIYAWFDRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLP
                     VVLNWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGI
                     AVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIP
                     SAQQKMASAVEKTLQPRSEQTQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
                     "
     gene            15858..17360
                     /gene="araA"
                     /locus_tag="OQQ19_000899"
     CDS             15858..17360
                     /gene="araA"
                     /locus_tag="OQQ19_000899"
                     /EC_number="5.3.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose isomerase"
                     /protein_id="HCS1802615.1"
                     /translation="MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKL
                     PCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQ
                     FHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERI
                     GSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVV
                     NSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFT
                     TTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMED
                     YTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAI
                     VASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHH
                     TVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR"
     gene            17560..18255
                     /gene="araD"
                     /locus_tag="OQQ19_000900"
     CDS             17560..18255
                     /gene="araD"
                     /locus_tag="OQQ19_000900"
                     /EC_number="5.1.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HCS1802616.1"
                     /translation="MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPS
                     GVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHAT
                     IWAQSGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDA
                     AQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMEIFCRQLAPQLPDMQQTLLDKH
                     YLRKHGAKAYYGQ"
     gene            18330..20681
                     /gene="polB"
                     /locus_tag="OQQ19_000901"
     CDS             18330..20681
                     /gene="polB"
                     /locus_tag="OQQ19_000901"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II"
                     /protein_id="HCS1802617.1"
                     /translation="MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAF
                     IPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVT
                     VYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETT
                     RHGELYCIGLEGCGQRIVYMLGSENGDASSLDFELEYVASRPQLLEKLNAWFANYDPD
                     VIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIID
                     GIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLK
                     DCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLG
                     EVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHS
                     TEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTAC
                     RFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIG
                     RALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEG
                     DKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDARL
                     VYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPL
                     DYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF"
     gene            20845..23751
                     /gene="rapA"
                     /locus_tag="OQQ19_000902"
     CDS             20845..23751
                     /gene="rapA"
                     /locus_tag="OQQ19_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001117023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-associated protein RapA"
                     /protein_id="HCS1802618.1"
                     /translation="MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYA
                     RSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFL
                     DSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLN
                     IAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVE
                     MLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL
                     LVVDEAHHLVWSEDAPSREYQAIEQLAEHMPGVLLLTATPEQLGMESHFARLRLLDPN
                     RFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSD
                     SEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKV
                     SGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLV
                     ICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG
                     SEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRW
                     YHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLE
                     QGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLLDIIGINQDDRGDNMIVL
                     TPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGS
                     STISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQV
                     EFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKL
                     SAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ"
     gene            23763..24422
                     /gene="rluA"
                     /locus_tag="OQQ19_000903"
     CDS             23763..24422
                     /gene="rluA"
                     /locus_tag="OQQ19_000903"
                     /EC_number="5.4.99.28"
                     /EC_number="5.4.99.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA pseudouridine(32) synthase/23S
                     rRNA pseudouridine(746) synthase RluA"
                     /protein_id="HCS1802619.1"
                     /translation="MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKD
                     SVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWG
                     HPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGR
                     SHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD
                     F"
     gene            complement(24539..25354)
                     /gene="djlA"
                     /locus_tag="OQQ19_000904"
     CDS             complement(24539..25354)
                     /gene="djlA"
                     /locus_tag="OQQ19_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlA"
                     /protein_id="HCS1802620.1"
                     /translation="MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWF
                     ANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFR
                     VGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEE
                     LGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDA
                     TTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK"
     gene            25609..27963
                     /gene="lptD"
                     /locus_tag="OQQ19_000905"
     CDS             25609..27963
                     /gene="lptD"
                     /locus_tag="OQQ19_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HCS1802621.1"
                     /translation="MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQ
                     GDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVR
                     TVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGEN
                     RYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQL
                     PVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEF
                     RYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWQHSGVMDQVWRFNVDYTKV
                     SDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEP
                     QLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTE
                     AKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTL
                     EPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRI
                     YDDAAVEHFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRG
                     GIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGI
                     SQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWD
                     NDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL"
     gene            28016..29302
                     /gene="surA"
                     /locus_tag="OQQ19_000906"
     CDS             28016..29302
                     /gene="surA"
                     /locus_tag="OQQ19_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SurA"
                     /protein_id="HCS1802622.1"
                     /translation="MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDG
                     LMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIAN
                     IAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESL
                     AQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIA
                     HSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGE
                     SKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGS
                     ANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAA
                     QKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN"
     gene            29302..30291
                     /gene="pdxA"
                     /locus_tag="OQQ19_000907"
     CDS             29302..30291
                     /gene="pdxA"
                     /locus_tag="OQQ19_000907"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HCS1802623.1"
                     /translation="MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLT
                     DRAAMLGLPLTLRPYSPNSPAQPQTAGTLTLLPVALRESVTAGQLAIENGHYVVETLA
                     RACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRV
                     ALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHM
                     GTEEIDTIIPVLDELRAQGMILNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQ
                     GFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ"
     gene            30288..31109
                     /gene="rsmA"
                     /locus_tag="OQQ19_000908"
     CDS             30288..31109
                     /gene="rsmA"
                     /locus_tag="OQQ19_000908"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HCS1802624.1"
                     /translation="MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEI
                     GPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFDELAE
                     KMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRL
                     SVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAF
                     NQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES"
     gene            31112..31489
                     /gene="apaG"
                     /locus_tag="OQQ19_000909"
     CDS             31112..31489
                     /gene="apaG"
                     /locus_tag="OQQ19_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Co2+/Mg2+ efflux protein ApaG"
                     /protein_id="HCS1802625.1"
                     /translation="MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQ
                     LLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMI
                     DENGVPFSIDIPVFRLAVPTLIH"
     gene            31496..32338
                     /gene="apaH"
                     /locus_tag="OQQ19_000910"
     CDS             31496..32338
                     /gene="apaH"
                     /locus_tag="OQQ19_000910"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     ApaH"
                     /protein_id="HCS1802626.1"
                     /translation="MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPG
                     SLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWL
                     RRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMP
                     NNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVA
                     EEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGE
                     AAAS"
     gene            complement(32416..32895)
                     /gene="folA"
                     /locus_tag="OQQ19_000911"
     CDS             complement(32416..32895)
                     /gene="folA"
                     /locus_tag="OQQ19_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 dihydrofolate reductase"
                     /protein_id="HCS1802627.1"
                     /translation="MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGR
                     HTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQ
                     FLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR"
     gene            complement(33087..34949)
                     /gene="kefC"
                     /locus_tag="OQQ19_000912"
     CDS             complement(33087..34949)
                     /gene="kefC"
                     /locus_tag="OQQ19_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     protein KefC"
                     /protein_id="HCS1802628.1"
                     /translation="MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPW
                     GLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLG
                     LFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAI
                     PLVAMIPLLATSSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREV
                     FSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLF
                     FIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQ
                     GSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREA
                     DEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDA
                     TRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQ
                     AGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTK
                     ARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS"
     gene            complement(34942..35472)
                     /gene="kefF"
                     /locus_tag="OQQ19_000913"
     CDS             complement(34942..35472)
                     /gene="kefF"
                     /locus_tag="OQQ19_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     oxidoreductase KefF"
                     /protein_id="HCS1802629.1"
                     /translation="MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNI
                     DIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHGWAYGHGGKALHGKHLLW
                     AVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQA
                     RHYKQRLLEWQEAHHG"
     gene            complement(35580..36832)
                     /locus_tag="OQQ19_000914"
                     /pseudo
     CDS             complement(35580..36832)
                     /locus_tag="OQQ19_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414587.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT         8966 a        10086 c         9688 g         8092 t
ORIGIN      
        1 catgcatata aaataagaaa aagcaaaatg agtaaaattc ggaaaacata aagatacggg
       61 ttctgataaa aacagaatcc attgccgtgg aatgagtcat ttaccacagc ataataatcc
      121 ataatgtttt tgttgcgaaa acaatctaat cataactacc gcgaatactc aatcatctac
      181 aaaatggatt aaatgtgctt atttaataat taatttatat atttaatgca ttaattatta
      241 acattaatgg atcaataata ttcaccatat caatatcaaa aaaaattcgc aaaacatata
      301 attcaataca aatcatcagg ataggttttg caacgcgtgc attttgtccc ctttttcctc
      361 gttgattaga tgcaaaaatt tattctgaaa tatgtcaacc tatgaaaagt gtcggtcgtt
      421 aaacagaaat taatatcgct tgctttaacc accgcagcac aattagctaa ttttacggat
      481 gcagaactcg cgctggcggg acgtttttat tgcgtcaggg ttgacatccg tttttgtatc
      541 cagtaactct aaaagcatat cgcattcatc tggagctgat ttaatgactc acatcgttcg
      601 ctttatcggt ctactactac taaacgcatc ttctttgcgc ggtagacgag tgagcggcat
      661 ccagcattaa gccagcacgc agtcaaacaa aaaacccgcg ccattgcgcg ggttttttta
      721 tgcccgaagc gaggcgctct aaaagagaca aggacccaaa ccatgagcca gcaagtcatt
      781 attttcgata ccacattgcg cgacggtgaa caggcgttac aggcaagctt gagtgtgaaa
      841 gaaaaactgc aaattgcgct ggcccttgag cgtatgggtg ttgacgtgat ggaagtcggt
      901 ttccccgtct cttcgccggg cgattttgaa tcagtgcaaa ccatcgcccg ccaggttaaa
      961 aacagccgcg tatgcgcgtt agctcgctgc gtggagaaag atatcgacgt ggcggccgaa
     1021 tccctgaaag tcgccgaagc cttccgtatt cataccttta ttgccacttc gccaatgcac
     1081 atcgccacca agctgcgcag cacgctggat gaagtgatcg aacgcgctat ctatatggtg
     1141 aaacgcgccc gtaattacac cgatgatgtt gaattttctt gcgaagatgc cgggcgtacc
     1201 cccattgccg atctggcgcg agtggtcgaa gcggcgatta atgccggtgc caccaccatc
     1261 aacattccgg acaccgtggg ctacaccatg ccgtttgagt tcgccggaat catcagcggt
     1321 ctgtatgaac gcgtacctaa catcgacaaa gccattattt ccgtacatac ccacgacgat
     1381 ttaggcctgg cggtcggcaa ctcactggcg gcggtacatg ccggtgcacg ccaggtggaa
     1441 ggtgcaatga acgggatcgg cgagcgtgcc ggtaactgtt cgctggaaga agtcatcatg
     1501 gcgattaaag ttcgtaagga tattctcaac gtccacaccg ccattaatca ccaggagata
     1561 tggcgcacca gccagttagt tagccagatt tgtaatatgc cgatcccggc aaacaaagcc
     1621 attgttggca gcggcgcatt cgcccactcc tccggtatcc accaggatgg cgtgctgaaa
     1681 aaccgcgaaa actacgaaat catgacacca gaatctattg gtctgaacca aatccagctg
     1741 aatctgacct ctcgttcggg gcgtgcggcg gtgaaacatc gcatggatga gatggggtat
     1801 aaagaaagtg aatataattt agacaatttg tacgatgctt tcctgaagct ggcggacaaa
     1861 aaaggtcagg tgtttgatta cgatctggag gcgctggcct tcatcggtaa gcagcaagaa
     1921 gagccggagc atttccgtct ggattacttc agcgtgcagt ctggctctaa cgatatcgcc
     1981 accgccgccg tcaaactggc ctgtggcgaa gaagtcaaag cagaagccgc caacggtaac
     2041 ggtccggtcg atgccgtcta tcaggcaatt aaccgcatca ctgactataa cgtcgaactg
     2101 gtgaaataca gcctgaccgc caaaggtcac ggtaaagatg cgctgggtca ggtggatatt
     2161 gtcgccaact acaacggtcg ccgcttccac ggcgtcggcc tggccaccga tattgtcgag
     2221 tcctccgcca aagccatggt gcacgtactg aacaatatct ggcgtgccgc agaagtcgaa
     2281 aaagagttgc aacgcaaagc tcaacacaac gaaaacaaca aggaaaccgt gtgatgtcga
     2341 agaattacca tattgccgta ttgccggggg acggtattgg tccggaagtg atgacccagg
     2401 cgctgaaagt gctggatgcc gtgcgcaacc gctttgcgat gcgcatcacc accagccatt
     2461 acgatgtagg cggcgcagcc attgataacc acgggcaacc actgccgcct gcgacggttg
     2521 aaggttgtga gcaagccgat gccgtgctgt ttggctcggt aggcggtccg aaatgggaac
     2581 atttaccacc agaccagcaa ccagaacgcg gcgcgctgtt gcctttgcgt aagcacttca
     2641 aattattcag caacctgcgt ccggcaaaac tgtatcaggg gctggaagca ttctgtccgc
     2701 tgcgtgctga cattgccgct aacggcttcg acatcctgtg cgtgcgcgaa ctgaccggcg
     2761 gcatctattt cggtcagcca aaaggccgcg aaggtagcgg acagtatgaa aaagcgtttg
     2821 ataccgaggt gtatcaccgt tttgagatcg aacgtatcgc ccgcatcgcg tttgaatctg
     2881 cccgcaagcg tcgccacaaa gtcacctcaa tcgacaaagc caacgtgctg caatcctcta
     2941 ttttatggcg ggagatcgtt aacgagatcg ccacggaata cccggatgtc gaactggcgc
     3001 atatgtacat cgacaacgcc accatgcagc tgattaaaga tccatcacag tttgacgtcc
     3061 tgctgtgctc caacctgttt ggcgacattc tgtctgacga gtgcgcaatg atcactggct
     3121 cgatggggat gttgccttcc gccagcctga acgagcaagg ttttggtctg tatgaaccgg
     3181 caggcggctc agcaccagat atcacaggca aaaacatcgc caacccgatt gcgcaaattc
     3241 tgtcgctggc actgctgctg cgctacagcc tggatgccga tgatgcggct tgcgccattg
     3301 aacgcgccat taaccgcgca ttagaagaag gcattcgcac cggggattta gcccgtggcg
     3361 ctgccgccgt tagtaccgat gaaatgggcg atatcattgc ccgctatgtg gcagaagggg
     3421 tgtaatcatg gctaaaacgt tatacgaaaa attattcgac gctcacgtag tgtacgaagc
     3481 cgaaaacgaa accccgctgt tatatatcga ccgccacctg gtgcatgaag tgacctcacc
     3541 gcaggcgttc gatggtctgc gcgcccacgg tcgcccggta cgtcagccgg gcaaaacctt
     3601 cgccactatg gatcacaacg tctctaccca gacgaaagac attaatgcct gtggtgaaat
     3661 ggcgcgcatc cagatgcagg agctgattaa aaactgcaaa gaatttggcg tcgaactgta
     3721 tgacctgaat cacccgtatc aggggatcgt ccacgtaatg gggccggaac agggcgtcac
     3781 cttgccgggg atgaccattg tctgcggcga ctcgcatacc gccacccacg gcgcgtttgg
     3841 cgcactggcc tttggtatcg gcacttccga agttgaacac gtactggcaa cgcaaaccct
     3901 gaaacagggc cgcgcaaaaa ccatgaaaat tgaagtccag ggcaaagccg cgccgggcat
     3961 taccgcaaaa gatatcgtgc tggcaattat cggtaaaacc ggtagcgcag gcggcaccgg
     4021 gcatgtggtg gagttttgcg gcgaagcaat ccgtgattta agcatggaag gtcgtatgac
     4081 cctgtgcaat atggcaatcg aaatgggcgc aaaagccggt ctggttgcac cggacgaaac
     4141 cacctttaac tatgtcaaag gccgtttgca tgcgccgaaa ggcaaagatt tcgacgacgc
     4201 cgttgcctac tggaaaaccc tgcaaaccga cgaaggcgca actttcgata ccgttgtcac
     4261 tctgcaagca gaagaaattt caccgcaggt cacctggggc accaatccag gccaggtgat
     4321 ttccgtgaac gacaatattc ccgatccggc ttcgtttgcc gatccggttg aacgcgcgtc
     4381 ggcagaaaaa gcgctggcct atatggggct gaaaccgggc attccgctga ccgaagtggc
     4441 tatcgacaaa gtgtttatcg gttcctgtac caactcgcgc attgaagatt tacgcgcggc
     4501 agcggagatc gccaaagggc gaaaagtcgc gccaggcgtg caggcactgg tggttcccgg
     4561 ctctggccag gtaaaagccc aggcggaagc ggaaggtctg gataaaatct ttattgaagc
     4621 cggttttgaa tggcgcttgc ctggctgctc aatgtgtctg gcgatgaaca acgaccgtct
     4681 gaatccgggc gaacgttgtg catccaccag caaccgtaac tttgaaggcc gccaggggcg
     4741 cggcgggcgc acgcatctgg tcagcccggc aatggctgcc gctgctgctg tgaccggaca
     4801 tttcgccgac attcgcaaca ttaaataagg agcagaccat ggcagagaaa tttatcaaac
     4861 acacaggcct ggtggttccg ctggatgccg ccaatgtcga taccgatgca atcatcccga
     4921 aacagttttt gcagaaagtg acccgtacgg gttttggcgc gcatctgttt aacgactggc
     4981 gttttctcga tgaaaaaggc caacagccaa acccggactt cgtgctgaac ttcccgcagt
     5041 atcagggcgc ttccattttg ctggcacgag aaaacttcgg ctgtggctcc tcgcgtgagc
     5101 acgcgccctg ggcattgacc gactacggtt ttaaagtggt gattgcgccg agttttgctg
     5161 acatcttcta cggcaatagc tttaacaacc agctgctgcc ggtgaaatta agcgatgcag
     5221 aagtggacga actgtttgcg ctggtgaaag ccaatccggg gatccatttc gacgtggatc
     5281 tggaagcgca agaggtgaaa gcgggagaga aaacctatcg ctttaccatc gatgccttcc
     5341 gccgccactg catgatgaac ggtctggaca gtattgggct taccttgcag cacgacgacg
     5401 ccattgccgc ttatgaagca aaacaacctg cgtttatgaa ttaatcccct tgcccggtca
     5461 aatgaccggg ctttccgcta tcgtccacgt catcaaacgt ctttaacctt tgcggttaaa
     5521 aataatgcga caacagaaat aaccgcaatt acccagtaga cagcaaagtg cccccaactt
     5581 tgtgcaattg ctccctgaat aacgccagcc agaattaccc cggtagaaat actgttagta
     5641 aataaggtgg tagctgcccc cgctcttcca ggcattaaat cctgaaacca tagcatccca
     5701 atacccgcaa caatgccgat aaatacagcg ttaaaaagtt gcagcgtcat caacgccata
     5761 cggctatgaa agaaaatcaa tccggtgtaa aacagtactc ctgccgccac tgctatgacc
     5821 atcattcgcc gcttaccata acgtttgaca tagtagccag ccagaatcat tgctggtatt
     5881 tccagtccag ctgccgtccc catcaggaaa cccgccagtt tgtctggcaa tcctaactcg
     5941 ctactgatcc acaacggcat atcaataatg tacatggtgt tgcaggtcca cattaacgtc
     6001 gaggcgacaa ataacatccg tacgttacta tcctgccagc caccttgcat tgataaagca
     6061 ttttccgacg gcagttctac ccgcgccaca gacggaagca taaatgcaat caataccaga
     6121 ctgagtgtga atatcccggc ggcaatcgaa aacatcacca cttctcgcgc cgagttatcc
     6181 gcatattccc gcgccagagc aaataactgt ggcattgccg tattggccag agatgccaga
     6241 agcacaccac aggtgataag cgtcagataa tgacgattaa atgcaaacaa tggcgcattg
     6301 ccgatagcca tcaaacagca aaatataatc agttttcgcc gatcgccctg actgtcagaa
     6361 cgttttgcca accagaggct tacgccgatc ccagcaatag tattcaccgt ataaaagagt
     6421 ccgatccaga aaggttgcgc gccaacctca cgactcagaa ataagctcaa tgtaggagcc
     6481 tgtagcgccc cggccacccc catcataaaa gcgaccagca taaatgccgc gtaaacaccg
     6541 ttcatacggc gagccatcgt cattatccag atcatacgtt ccctttttag cgcggcgaga
     6601 ataaaaaaaa ccagcaggta taatctgctg gcgggtgatt ttacaccaat actcagtcac
     6661 acatgatgca ggcaagtcaa ctttcagaat tgcggtcatc ccactgcatc agtccttcaa
     6721 gcatggttaa tcgttgtggg acgcttaacc aacgcaacca gcacaacttc gctgtcgcgg
     6781 taaaatagtg ctgataaaac tgacgcatgg ggcacctcct tgcttcatcg ttaggaatta
     6841 ttgacttaat atagggaaaa taaaattgct gtcttttgcg caggagttcc ccttttatgc
     6901 catctgctcg tctgcaacaa cagttcatcc gcctgtggca atgctgcgag ggtaaatcgc
     6961 aggacacaac gctcaacgaa ctggcagcgt tattgagctg ctcgcgtcgt catatgcgta
     7021 ccctgctcaa caccatgcag gatcgcggct ggctgacgtg ggaagcggaa gtcgggcgcg
     7081 gtaaacgctc gcgtctgaca ttcctctata ccgggctggc gcttcagcaa cagcgggcgg
     7141 aagacctgct ggagcaggat cgtatcgacc aactagtgca gttggttggc gacaaagcga
     7201 ctgtgcggca aatgctggtt tctcatctgg gccgcagctt ccgccagggg cggcacatcc
     7261 tgcgcgtgct ctactatcgt ccgttgcgta atctgctacc tggcagcgca ttgcgccgtt
     7321 ccgaaaccca tattgcccgg caaatcttca gttcgctaac gcgcataaat gaggaaaatg
     7381 gggaactgga agcagacatc gcccaccact ggcagcaaat atcaccgctt cactggcgtt
     7441 tctttttgcg tccaggagtc cattttcatc atggtcgtga actggaaatg gacgacgtga
     7501 tcgcctcttt aaaacgaatc aatacgctgc cgctctattc gcatattgcg gacattgtgt
     7561 cgccgacgcc ctggacgctg gatatccatc tcacgcaacc ggaccgctgg ttaccgttac
     7621 tgctggggca agttccggcg atgatcctgc cgcgcgaatg ggaaaccctc agtaactttg
     7681 ccagccatcc catcggcacc ggtccgtatg cggtgatccg caacaccacc aatcaactga
     7741 aaattcaggc attcgatgac ttcttcggtt accgggcatt aatcgatgaa gttaacgtct
     7801 gggttctgcc ggaaattgcc gacgagccag ctggaggtct gatgctaaaa ggtccacagg
     7861 gtgaggaaaa agagattgaa agccgcctgg aggaaggttg ctactattta ctattcgaca
     7921 gccgcaccca tcgcggagcg aatcagcaag tcagggactg ggtaaactat gtgctttctc
     7981 caactaatct ggtctatttc gctgaggaac agtaccagca actgtggttc ccggcttatg
     8041 gactgctccc ccgttggcac catgcccgca ccataaagag cgaaaaaccg gctggcctgg
     8101 aaagcctcac cctgaccttt tatcaggatc acagtgagca tcgggtgatt gccgggatca
     8161 tgcagcagat tctggcaagt caccaggtca cgctggaaat caaagagatc agctacgatc
     8221 agtggcatga aggagagatc gagagcgata tctggcttaa tagcgccaac tttacgctgc
     8281 cgctggattt ttcgctgttc gcgcacttgt gcgaggtgcc gctgctccaa cactgtattc
     8341 cgatcgactg gcaagccgac gccgcccgct ggcgcaatgg cgaaatgaac ctggcgaact
     8401 ggtgccagca actggtcgcc agtaaagcaa tggtgccgct tatccaccac tggctgatca
     8461 ttcagggaca acgcagtatg cgcggcctgc gtatgaatac cctcggctgg ttcgatttta
     8521 aatcagcgtg gtttgcgccg ccggatccat gattgctggt agataacaaa atcactacac
     8581 taacgccgtt ctcaacgggg tgccacgcaa acgcgtgcgc tgagaaaata cccgtcgaac
     8641 ctgatccgga taacgccggc gaagggattt gaggctcctt ctcaagtcct ttgccactct
     8701 tttttgaggt gcaaagtgtt aaaaaaatgt cttcccctgc tgttgctgtg cacagcgccc
     8761 gttttcgcta aacccgttct gactgtttat acctacgatt ccttcgccgc cgactggggg
     8821 cctggtccaa agatcaaaaa agcttttgaa gccgactgta actgcgaact gaaactggtg
     8881 gcgctggaag atggcgtttc gcttctcaac cgtctacgga tggaaggcaa aaatagtaaa
     8941 gccgatgtgg tgctggggct ggataacaat ctgttagacg ccgccagtaa aaccggacta
     9001 tttgccaaaa gcggtgtggc agcggatgcc gttaacgttc ccggcggctg gaataatgac
     9061 actttcgtcc cgtttgatta cggctatttc gccttcgtct atgacaagaa caaactgaaa
     9121 aacccgccgc aaagcctgaa agaattggtt gagagcgatc aaaactggcg ggtgatttat
     9181 caggatccgc gcaccagtac gccggggctg ggcctgctgt tgtggatgca aaaagtctat
     9241 ggcgatgacg ccccacaagc ctggcaaaaa ctggcgaaga aaaccgtcac ggtcaccaaa
     9301 ggctggagcg aagcctacgg cctgttttta aaaggtgaaa gcgatctggt actgagttac
     9361 accacctctc cggcttatca cattctcgaa gagaaaaaag ataactacgc cgccgcgaac
     9421 tttagcgaag gtcactatct gcaggtggaa gtcgccgccc gcaccgctgc cagcaagcag
     9481 ccggagctgg cgcaaaaatt cctccagttt atggtttctc cggcttttca gaatgcgatc
     9541 ccaaccggta actggatgta tccggtggca aatgtcacgc tgcctgccgg gtttgaacaa
     9601 ttgaccaaac cggccaccac gctggagttc acaccagctg aagtggcggc acaacgtcag
     9661 gcatggatta gcggatggca acgcgccgtc agccgttaat tcccggctgg ttaattccag
     9721 gtgtaagcgc cgccacgctg gtggtagcgg ttgcgctcgc ggcgtttctc gccctgtggt
     9781 ggaacgcgcc gcagggtaac tgggtggcag tctggcagga cagctacctg tggcatgtgg
     9841 tgcgcttctc cttctggcag gcgtttctct cggcgctact ctctgtcgta cccgcgatat
     9901 tcctcgcccg cgccctctat cgcaggcgct ttccgggtcg gctggcgctg ttgcgtctgt
     9961 gcgcaatgac cttgatcctc ccggtgctgg ttgctgtttt cggcattctt agcgtctatg
    10021 gtcgccaggg ctggctggca tcgctctgcc aatcgctcgg tctggagtgg accttttcgc
    10081 cctacggcct gcaaggtatt ttgctggcgc acgtattttt taatctgccg atggcgagcc
    10141 gcttattact ccaggcactg gaaaacattc ccgacgaaca acgtcagctt gccgcccagc
    10201 ttgggatgcg cggctggcat tttttccgct tcgtcgaatg gccgtggtta cggcgacaaa
    10261 tcccgccggt tgctgcactt atctttatgc tctgtttcgc cagcttcgcc accgtgctat
    10321 cactgggcgg cggtccgcag gcgaccacta tcgagctggc tatttatcag gcgctgagtt
    10381 acgactacga tcctgcccgc gcggcgatgc tggcgctgat ccagatggtg tgttgccttg
    10441 ggctggtact attgagtcag cgattgagta aggccattgc gccaggcacc acgctgctgc
    10501 aaggctggcg cgacccggac gatcgtctgc atagccgcat ttgcgacacg gtgttaatag
    10561 tgctggcgtt gctgctgttg ttgccaccgt tgctggcggt gatcgtcgat ggggtaaatc
    10621 gccagttgcc ggaagtgctg gcacaaccgg tgctgtggca ggcgctgtgg acctcgttgc
    10681 gtattgcgct ggcggcaggt gtattgtgcg tagtgctgac catgatgctg ctatggagca
    10741 gtcgcgaact tcgggcacgg cagaaaatgc tggcgggtca ggcgctggag atgagcggca
    10801 tgttgattct cgccatgccg gggattgtgc tggctaccgg cttcttttta ctgctcaaca
    10861 acactatcgg cctgcaacaa tctgctgacg gcattgtgat tttcaccaat gcgttaatgg
    10921 cgatccctta tgcgctgaaa gtactggaaa acccgatgcg cgatatcacc gcccgctaca
    10981 gtatgttgtg tcagtcgctg ggcattgaag gctggtcgcg cttaaaagtg gtggagctgc
    11041 gcgccctgaa acgtccactg gcgcaggcgc tggcctttgc ctgcgtgctg tcgattggtg
    11101 attttggcgt ggtggcgttg ttcggtaacg atgatttccg taccctgccg ttttatctct
    11161 accagcaaat tggctcctat cgcagccagg acggcgcggt caccgcgtta attctgctgc
    11221 tactctgttt tctgctgttt accgtgattg aaaaactacc ggggcgaaat gttaaaactg
    11281 actgatatca cctggcttta ccaacatttg ccgatgcgtt ttagcttaac ggtggaacgc
    11341 ggcgagcagg tggcgatcct cgggccaagc ggcgcaggta aaagtaccct gctgaatttg
    11401 attgccggtt ttctgacgcc agccagcggt tcgctgacta tcgatggcgt tgatcacacc
    11461 acgacgccgc cgtcacgccg tccggtgtcg atgctgtttc aggagaacaa cctgttcagc
    11521 cacctgacgg tcgcgcagaa catcgggctg gggcttaatc caggattgaa gctgaacgcg
    11581 gcacagcagg agaaaatgca cgctatcgcc cgtcagatgg ggattgataa tttaatggcg
    11641 cggttaccgg gcgagctttc cggcggccag cgacagcgcg tggcgttagc gcgttgtctg
    11701 gtgcgcgaac agccgatttt attgctcgat gaaccgttct ctgcgctcga tccggcgtta
    11761 cgtcaggaga tgctgacgct ggtgagcacg agctgccagc agcaaaaaat gacgctattg
    11821 atggtgtcgc acagtgtgga agatgcggcg cggatcgcca cacgctcggt ggtggtcgcc
    11881 gacgggcgca tcgcctggca gggtaagact gaagaattgt tgagcggtaa ggcgagtgct
    11941 tcggcaatat tggggattac gggttagtat gcactgtcag atgcggcgtg aacaccttat
    12001 ccgacctacg gacagtgcgt tttgtaggcc tgataagacc ggtcagcgtc gcatcaggca
    12061 acccgcacaa gacaatcccc taaaccccaa ccactttacg caaaatatcg atatacaccg
    12121 gcatcaacgg gtggcgaatt aacaccacca gcgccaccac gccgatggca gaaatcaacg
    12181 gcgtcagcca caacaaacgg ccgcgcgaca aataatgact taaacgatcg gttgctttac
    12241 cgctgcgcca taaccgccag cacagccagc caccaaccca caaaaatacc gccgtcgcca
    12301 gcagcaacca tttaaactcg ccgctctgca ttccggctgg aatatcgatc gccgcgcccg
    12361 ccagaatccc aggcaggaag taaaacggtg gccacagcag gcagccgata atattcggcg
    12421 taatgaattt tgccaccggc agatccagca ttcccgccac cattggcacc agcggacgcg
    12481 tcgggccaac aaagcgaccg accagaatgg tgaacatgct gtgttgatgc aacgcatgtt
    12541 cagttttatc gagtaatgct ttgtttttct tcagaaatga ccagcgatgc aacggctttt
    12601 taaaacgcca gcccagccag aaggagatcc agtcgcccag cagacaaccg acaatccctg
    12661 ccagccaggc gtgccagaaa cttaactcgc cgctgccaat cagcgctccc agccccgcca
    12721 tcagcaccgt accgggtaga atcaaaccga ccagcgccag cgactccaga aaggccacca
    12781 acaccaccgc catcaatgaa tacacggtag attgggtaat aaagtgttcc agcaatgctt
    12841 gcataatgtg cctgtcaaat ggacgaagca gggattctgc aaaccctatg ctactccgtc
    12901 aagccgtcaa ttgtctgatt cgttaccaat tatgacaact tgacggctac atcattcact
    12961 ttttcttcac aaccggcacg gaactcgctc gggctggccc cggtgcattt tttaaatacc
    13021 cgcgagaaat agagttgatc gtcaaaacca acattgcgac cgacggtggc gataggcatc
    13081 cgggtggtgc tcaaaagcag cttcgcctgg ctgatacgtt ggtcctcgcg ccagcttaag
    13141 acgctaatcc ctaactgctg gcggaaaaga tgtgacagac gcgacggcga caagcaaaca
    13201 tgctgtgcga cgctggcgat atcaaaattg ctgtctgcca ggtgatcgct gatgtactga
    13261 caagcctcgc gtacccgatt atccatcggt ggatggagcg actcgttaat cgcttccatg
    13321 cgccgcagta acaattgctc aagcagattt atcgccagca gctccgaata gcgcccttcc
    13381 ccttgcccgg cgttaatgat ttgcccaaac aggtcgctga aatgcggctg gtgcgcttca
    13441 tccgggcgaa agaaacccgt attggcaaat attgacggcc agttaagcca ttcatgccag
    13501 taggcgcgcg gacgaaagta aacccactgg tgataccatt cgcgagcctc cggatgacga
    13561 ccgtagtgat gaatctctcc tggcgggaac agcaaaatat cacccggtcg gcaaacaaat
    13621 tctcgtccct gatttttcac caccccctga ccgcgaatgg tgagattgag aatataacct
    13681 ttcattccca gcggtcggtc gataaaaaaa tcgagataac cgttggcctc aatcggcgtt
    13741 aaacccgcca ccagatgggc attaaacgag tatcccggca gcaggggatc attttgcgct
    13801 tcagccatac ttttcatact cccgccattc agagaagaaa ccaattgtcc atattgcatc
    13861 agacattgcc gtcactgcgt cttttactgg ctcttctcgc taacccaacc ggtaaccccg
    13921 cttattaaaa gcattctgta acaaagcggg accaaagcca tgacaaaaac gcgtaacaaa
    13981 agtgtctata atcacggcag aaaagtccac attgattatt tgcacggcgt cacactttgc
    14041 tattccatag catttttatc cataagatta gcggatccta cctgacgctt tttatcgcaa
    14101 ctctctactg tttctccata cccgtttttt tggatggagt gaaacgatgg cgattgcaat
    14161 tggcctcgat tttggcagtg attctgtgcg agctttggcg gtggactgcg ccagcggtga
    14221 agagatcgcc accagcgtag agtggtatcc ccgttggcaa aaagggcaat tttgtgatgc
    14281 cccgaataac cagttccgtc atcatccgcg tgactacatt gagtcaatgg aagcggcact
    14341 gaaaaccgtg cttgcagagc ttagcgtcga acagcgcgca gctgtggtcg ggattggcgt
    14401 tgacagtacc ggctcgacgc ccgcaccgat tgatgccgac ggtaacgtgc tggcgctgcg
    14461 cccggagttt gccgaaaacc caaacgcgat gttcgtattg tggaaagacc acactgcggt
    14521 tgaagaagcg gaagagatta cccgtttgtg ccacgcgccg ggcaacgttg actactcccg
    14581 ctacattggt ggtatttatt ccagcgaatg gttctgggca aaaatcctgc atgtgactcg
    14641 ccaggacagc gccgtggcgc aatctgccgc atcgtggatt gagctgtgcg actgggtgcc
    14701 agctctgctt tccggtacca cccgcccgca ggatattcgt cgcggacgtt gcagcgccgg
    14761 gcataaatct ctgtggcacg aaagctgggg cggcttgccg ccagccagtt tctttgatga
    14821 gctggacccg atcctcaatc gccatttgcc ttccccgctg ttcactgaca cctggactgc
    14881 cgatattccg gtgggcacct tatgcccgga atgggcgcag cgtctcggcc tgcctgaaag
    14941 cgtggtgatt tccggcggcg cgtttgactg ccatatgggc gcagttggcg caggcgcaca
    15001 gcctaacgca ctggtaaaag ttatcggtac ttccacctgc gacattctga ttgccgacaa
    15061 acagagcgtt ggcgagcggg cagttaaagg tatttgcggt caggttgatg gcagcgtggt
    15121 acctggattt atcggtctgg aagcaggcca atcggcgttt ggtgatatct acgcctggtt
    15181 tgatcgcgta ctcggctggc cgctggaaca gcttgccgcc cagcatccgg aactgaaagc
    15241 gcaaatcaac gccagccaga aacaactgct tccggcgctg accgaagcat gggccaaaaa
    15301 tccgtctctg gatcacctgc cggtggtgct caactggttt aacggccgcc gcacaccgaa
    15361 cgctaaccaa cgcctgaaag gggtgattac cgatcttaac ctcgctaccg acgctccgct
    15421 gctgtttggc ggtttgattg ctgccaccgc ctttggcgca cgcgcaatca tggagtgctt
    15481 taccgatcag gggatcgccg tcaataacgt gatggcgctg ggcggcatcg cgcggaaaaa
    15541 ccaggtcatt atgcaggcct gctgcgacgt gctgaatcgc ccgctgcaaa ttgttgcctc
    15601 tgaccagtgc tgtgcgctcg gtgcggcgat ttttgctgcc gtcgccgcga aagtgcacgc
    15661 agacatccca tcagcccagc aaaaaatggc cagtgcggta gagaaaaccc tgcaaccgcg
    15721 cagcgaacag acacaacgct ttgaacagct ttatcgccgc tatcagcaat gggcgatgag
    15781 cgccgaacaa cactatcttc caacttccgc cccggcacag gctgcccagg ccgttccgac
    15841 tctataagga cacgataatg acgatttttg ataattatga agtgtggttt gtcattggca
    15901 gccagcatct gtatggcccg gaaaccctgc gtcaggtcac ccaacatgcc gagcacgttg
    15961 ttaatgcgct gaatacggaa gcgaaactgc cctgcaaact ggtgttgaaa ccgctgggca
    16021 ccacgccgga tgaaatcacc gctatttgcc gcgacgcgaa ttacgacgat cgttgcgctg
    16081 gtctggtggt gtggctgcac accttctccc cggccaaaat gtggatcaac ggcctgacca
    16141 tgctcaacaa accgttgctg caattccaca cccagtttaa cgcggcgctg ccgtgggaca
    16201 gtatcgatat ggactttatg aacctgaacc agactgcaca tggcggtcgc gagttcggct
    16261 tcattggcgc gcgtatgcgt cagcaacatg ccgtggttac cggtcactgg caggataaac
    16321 aagcccatga gcgtatcggc tcctggatgc gtcaggcggt ctctaaacag gatacccgtc
    16381 atctgaaagt ctgccgtttt ggcgataaca tgcgtgaagt agcggtcacc gatggtgata
    16441 aagttgccgc acagatcaag ttcggtttct ccgtcaatac ctgggcggtt ggcgatctgg
    16501 tgcaggtggt gaactccatc agcgacggcg atgttaacgc gctggtcgat gagtacgaaa
    16561 gctgctacac catgacgcct gccacacaaa tccacggcga aaaacgacag aacgtgctgg
    16621 aagcggcgcg tattgagctg gggatgaagc gtttcctgga acaaggtggc ttccacgcgt
    16681 tcaccaccac ctttgaagat ttgcacggtc tgaaacagct tccaggtctg gccgtacagc
    16741 gtctgatgca gcagggttac ggctttgcgg gcgaaggcga ctggaaaacc gccgccctgc
    16801 ttcgcatcat gaaggtgatg tcaaccggtc tgcagggcgg cacctccttt atggaggact
    16861 acacctatca cttcgagaaa ggtaatgacc tggtgctcgg ctcccatatg ctggaagtct
    16921 gcccgtcgat tgccgtagaa gagaaaccga tcctcgacgt tcagcatctc ggtattggtg
    16981 gtaaggacga tcctgcccga ctgatcttca atacccaaac cggtccagcg attgtcgcca
    17041 gcctgattga tctcggcgat cgttaccgtc tgctggttaa ctgtatcgac acggtgaaaa
    17101 caccgcactc cctgccgaaa ctgccggtgg cgaatgcgct gtggaaagcg caaccggatc
    17161 tgccaactgc ttccgaagcg tggatcctcg ctggtggcgc gcaccatacc gtcttcagcc
    17221 atgcgctgaa cctcaacgat atgcgtcagt tcgccgagat gcacgacatt gaaatcacgg
    17281 tgattgataa cgacacccgc ctgccagcgt ttaaagacgc actgcgctgg aacgaagtgt
    17341 attacggatt tcgtcgctaa gtagccacat caggtatgta acgcctgatg cgacgctgac
    17401 gcgtcttatc tggcctacac gctgcgattt tgtaggccgg ataagcaaag cgcatccggc
    17461 attcaacgcc tgatgcgacg ctggcgcgtc ttatcaggcc tacgcgctgc gattttgtag
    17521 accggataag cgaagcgcat ccggcacgaa ggagtcaaca tgttagaaga tctcaaacgc
    17581 caggtattag aagccaacct ggcgctgcca aaacacaacc tggtcacgct cacatggggc
    17641 aacgtcagcg ccgttgatcg cgagcgcggc gtctttgtga tcaaaccttc cggcgtcgat
    17701 tacagcgtca tgaccgctga cgatatggtc gtggttagca tcgaaacagg tgaagtggtt
    17761 gaaggtacga aaaagccctc ctccgacacg ccaactcacc ggctgctcta tcaggcattc
    17821 ccctccattg gcggcattgt gcatacgcac tcgcgccacg ccaccatctg ggcgcagtcg
    17881 ggtcagtcga ttccagcaac cggcaccacc cacgccgact atttctacgg caccattccc
    17941 tgcacccgca aaatgaccga cgcagaaatc aacggcgaat atgagtggga aaccggtaac
    18001 gtcatcgtag aaacctttga aaaacagggt atcgatgcag cgcaaatgcc cggcgttctg
    18061 gtccattccc acggcccgtt tgcatggggc aaaaatgccg aagatgcggt gcataacgcc
    18121 atcgtgctgg aagaggtcgc ttatatggag atattctgcc gtcagttagc gccgcagtta
    18181 ccggatatgc agcaaacgct gctggataaa cactatctgc gtaagcatgg cgcgaaggca
    18241 tattacgggc agtaatgact gtataaaacc acagccaatc aaacgaaacc aggctatact
    18301 caagcctggt tttttgatgg attttcagcg tggcgcaggc aggttttatc ttaacccgac
    18361 actggcggga caccccgcaa gggacagaag tctccttctg gctggcgacg gacaacgggc
    18421 cgttgcaggt tacgcttgca ccgcaagagt ccgtggcgtt tattcccgcc gatcaggttc
    18481 cccgcgctca gcatattttg cagggtgaac aaggctttcg cctgacaccg ctggcgttaa
    18541 aggattttca ccgccagccg gtgtatggcc tttactgtcg cgcccatcgc caattgatga
    18601 attacgaaaa gcgcctgcgt gaaggtggcg ttaccgtcta cgaggccgat gtgcgcccgc
    18661 cagaacgcta tctgatggag cggtttatca cctcaccggt gtgggtcgag ggtgatatgc
    18721 acaatggcac tatcgttaat gcccgtctga aaccgcatcc cgactatcgt ccgccgctca
    18781 agtgggtttc tatagatatt gaaaccaccc gccacggtga gctgtactgc atcggcctgg
    18841 aaggctgcgg gcagcgcatc gtttatatgc tggggtcgga gaatggcgac gcctcctcgc
    18901 ttgatttcga actggaatac gtcgccagcc gcccgcagtt gctggaaaaa ctcaacgcct
    18961 ggtttgccaa ctacgatcct gatgtgatca tcggttggaa cgtggtgcag ttcgatctgc
    19021 gaatgctgca aaaacatgcc gagcgttacc gtcttccgct gcgtcttggg cgcgataata
    19081 gcgagctgga gtggcgcgag cacggcttta aaaacggcgt cttttttgcc caggctaaag
    19141 gtcggctaat tatcgacggt atcgaggcgc tgaaatccgc gttctggaat ttctcttcat
    19201 tctcgctgga aactgtcgct caggagctat taggcgaagg aaaatctatc gataacccgt
    19261 gggatcgaat ggacgaaatt gaccgccgtt tcgccgaaga taaacctgcg ctggcaactt
    19321 ataacctgaa agattgcgag ctggtgacgc agatcttcca caaaactgaa atcatgccat
    19381 ttttactcga acgggcaacg gtgaacggcc tgccggtgga ccgacacggc ggttcggtgg
    19441 cggcatttgg tcatctctat tttccgcgaa tgcatcgcgc tggttatgtc gcgcctaatc
    19501 tcggcgaagt gccgccgcac gccagccctg gcggctacgt gatggattca cggccagggc
    19561 tttatgattc agtgctggtg ctggactata aaagcctgta cccgtcgatc atccgcacct
    19621 ttctgattga tcccgtcggg ctggtggaag gcatggcgca gcctgatcca gagcacagta
    19681 ccgaaggttt tctcgatgcc tggttctcgc gagaaaaaca ttgcctgccg gagattgtga
    19741 ctaacatctg gcacgggcgc gatgaagcca aacgccaggg taacaaaccg ctgtcgcagg
    19801 cgctgaaaat catcatgaat gccttttatg gcgtgctcgg caccaccgcc tgccgcttct
    19861 tcgatccgcg gctggcatcg tcgatcacca tgcgtggtca tcagatcatg cggcaaacca
    19921 aagcgttgat tgaagcacag ggctacgacg ttatctacgg cgataccgac tcaacgtttg
    19981 tctggctgaa aggcgcacat tcggaagaag aagcggcgaa aatcggtcgt gcactggtgc
    20041 agcacgttaa cgcctggtgg gcggaaacgc tgcaaaaaca acggctgacc agcgcattag
    20101 aactggagta tgaaacccat ttctgccgtt ttctgatgcc aaccattcgc ggagccgata
    20161 ccggcagtaa aaagcgctac gccgggctga ttcaggaggg cgataaacag cggatggtgt
    20221 ttaaagggct ggaaaccgtg cgcaccgact ggacgccgct ggcccagcag tttcagcagg
    20281 agctatacct gcgcatcttc cgcaacgagc catatcagga atatgtacgc gaaaccatcg
    20341 acaaactgat ggcgggtgaa ctggatgcgc gactggttta ccgtaaacgc cttcgccgtc
    20401 cgctgagcga gtatcagcgt aatgtgccgc ctcatgtacg cgccgctcgc cttgccgatg
    20461 aagaaaacca aaagcgtggt cgccccttgc aatatcagaa tcgcggcacc attaagtacg
    20521 tatggaccac caacggcccg gagccgctgg actaccaacg ttcaccactg gattacgaac
    20581 actatctgac ccgccagcta caacccgtgg cggagggaat actccctttt attgaggata
    20641 attttgctac acttatgacc gggcaacttg ggctattttg agcaaaaaaa gagttcgcca
    20701 gataccattt tgatgcgtga cgaatgcttt gccatccagt accatagcgc cctttccatt
    20761 cctggacctg aataacacca ctacctcata agcacggtag cgggtggtta ttgcctgcaa
    20821 ttaaagatat agagccgaac acatatgcct tttacacttg gtcaacgctg gatcagcgat
    20881 acagaaagcg aattgggact tggaaccgtt gtcgcggtgg atgcgcgaac tgtcacttta
    20941 cttttcccat ctactggtga aaaccgtctg tacgcacgca gtgattcccc cgtgacccgc
    21001 gtgatgttca accctggtga taccattacc agccatgacg gctggcagat gcaagtcgaa
    21061 gaagtaaaag aagaaaatgg cttgctgacc tatatcggta ctcgcctgga tactgaagag
    21121 tccggcgtag ccctgcgtga agttttcctt gatagcaaac tggtgttcag caaaccgcag
    21181 gaccgcctgt ttgccgggca gattgaccgt atggaccgct ttgcgctgcg ttatcgcgcg
    21241 cgtaagtatt ccagcgaaca gttccgtatg ccgtacagcg gcctgcgcgg tcagcgtacc
    21301 agcctgatcc cgcaccagct caacatcgct catgatgttg gccgccgcca cgcgccgcgc
    21361 gtcctgctgg ctgacgaagt gggtttaggg aaaaccattg aagccgggat gatcctgcat
    21421 cagcaactgc tctctggcgc tgctgaacgt gtgctgatta tcgtcccgga aaccttacag
    21481 catcagtggc tggtagaaat gctgcgccgt ttcaacctgc gctttgctct gtttgatgat
    21541 gagcgttatg ccgaagctca gcacgatgct tacaacccgt tcgacaccga acagctggtg
    21601 atttgctcgc tggattttgc ccgtcgtagc aaacagcgcc tggaacatct ctgtgaagcc
    21661 gaatgggacc tgctggtggt cgatgaagcg catcacctgg tgtggagcga agatgcgcca
    21721 agccgtgaat atcaggccat tgaacaactg gcagagcaca tgccgggcgt tctgctgctg
    21781 accgcgaccc cggaacagct ggggatggaa agccacttcg cccgtctgcg tctgctggac
    21841 ccgaaccgtt tccacgattt tgcgcagttc gttgaagagc agaaaaatta tcgtccggtt
    21901 gcggacgccg ttgccatgct gctggcaggt aacaaactga gcaatgacga actgaacatg
    21961 ctcggcgaga tgatcggcga gcaggatatc gagccgctgt tgcaggcagc aaacagcgac
    22021 agcgaagatg cccagagcgc ccgtcaggag ctggtttcga tgctgatgga tcgccacggc
    22081 accagccgcg tgctgttccg taacacgcgt aacggtgtga aaggattccc gaaacgcgag
    22141 ctgcacacca ttaagctgcc gctaccgacg cagtatcaga cggctattaa agtctccggc
    22201 attatgggcg cacgtaaaag tgcggaagat cgtgctcgcg atatgctcta cccggagcgt
    22261 atttatcagg aatttgaagg tgataacgcc acctggtgga acttcgatcc gcgcgttgag
    22321 tggctgatgg gctacctgac cagccatcgc tctcagaaag tgctggtgat ctgcgccaaa
    22381 gctgccactg cgctgcaact ggagcaggta ctgcgcgaac gtgaaggtat tcgcgctgcg
    22441 gtgttccacg aaggtatgtc gattatcgaa cgtgaccgcg ctgccgcctg gtttgccgaa
    22501 gaagacaccg gcgcacaggt actgctgtgc tcagaaatcg gttctgaagg acgtaacttc
    22561 cagttcgcca gccacatggt gatgtttgac ctgccattca acccggatct actggagcag
    22621 cgtattggtc gtctggatcg tatcggccag gcgcacgata ttcagatcca tgtgccttat
    22681 ctggagaaaa ccgctcagtc ggtgctggtg cgctggtatc acgaaggtct ggatgcattt
    22741 gagcacacct gcccgaccgg acgcactatt tacgatagcg tatacaacga tctgattaac
    22801 tatctggctt caccggatca aaccgaaggc tttgacgatc tgatcaaaaa ctgccgcgag
    22861 caacatgaag cgctgaaagc acagctggaa cagggtcgtg accgcctgct ggaaatccac
    22921 tccaacggtg gcgaaaaagc ccaggcactg gcagaaagca ttgaagagca ggatgacgat
    22981 accaacctga tcgccttcgc catgaacctg ctcgatatta tcggtatcaa tcaggacgat
    23041 cgcggcgaca acatgatcgt gctgacgccg tccgatcata tgctggtgcc ggacttccct
    23101 ggcctgtcgg aagatggcat caccatcacc tttgatcgtg aagtggcgct ggcgcgtgaa
    23161 gatgcacagt ttattacctg ggagcatccg ctgatccgca acggtctgga tctgatcctt
    23221 tctggcgata ccggtagcag cacgatttca ctgttaaaaa acaaagcgtt gccggtaggt
    23281 acgctgttgg tggaactgat ttatgtggtt gaagcccagg ctccgaagca gttgcagctc
    23341 aaccgcttcc tgccaccgac gccggtacgt atgctgctgg ataaaaacgg caacaacctg
    23401 gcggcgcagg tagagtttga aacctttaac cgccagctta acgcggttaa ccgtcacacc
    23461 ggcagcaaac tggttaacgc cgtgcagcag gatgttcacg ctatccttca actgggtgaa
    23521 gcgcagatcg agaaatctgc ccgtgcattg attgatgcag cgcgtaacga agccgacgaa
    23581 aaactgtctg ccgagctgtc tcgtctggaa gctctgcgtg cagtgaaccc gaacattcgt
    23641 gacgacgaac tgaccgccat tgagagcaac cgtcagcagg taatggaaag cctggatcag
    23701 gcaggttggc gtctggatgc cctgcgtttg atcgttgtaa cgcatcagta acggagccga
    23761 aaatggggat ggaaaactac aatccaccgc aggaaccctg gttggttatc ctgtatcagg
    23821 atgaccacat tatggtggtt aacaagccga gcggtttgtt gtctgtgccg gggcgtctgg
    23881 aagagcacaa agacagcgtg atgacgcgca ttcagcgtga ttatccgcag gcagaatcgg
    23941 tgcatcgtct ggatatggct accagcggcg tgattgtagt ggcgctgacc aaagccgcgg
    24001 agcgggagtt aaaacgccag ttccgcgagc gcgagccgaa aaagcagtat gtggcccgcg
    24061 tctgggggca tccatcccct gcggaaggtc tggtggatct gccgctgatt tgcgactggc
    24121 caaaccgccc gaaacagaaa gtctgttacg aaacgggtaa acctgcgcag acggaatatg
    24181 aagtggtgga gtatgcggcg gataacacgg caagagtggt gttaaaaccg attactgggc
    24241 gttcgcatca attgcgtgtg catatgctgg cgctggggca tccgattctc ggcgatcgtt
    24301 tttatgcatc accagaagcg agagcgatgg caccgcgttt gttgctacat gcagagatgt
    24361 tgacgattac ccatccggcg tatggcaata gtatgacgtt taaagcgcca gcggattttt
    24421 aatagtcacg ctggcgcagt tcggtaggcg gataaggcgt tcacgccgaa tccggcaatt
    24481 gtgcgccgat tgcctgatgc gacgcgggcc gcgtcttatc aggcctacag tttaaaactt
    24541 atttaaaccc tttctgctgc tttatcagct catatgcctg ctgaatttcc tgcgctttct
    24601 gcttcgccat ctccatcatc tcaggcggca aacctttcgc caccagctta tcgggatggt
    24661 gttcactcat cagcttacgg taggctcgtt taatggtggt cgcatcatcc gtcggcttca
    24721 cacccagcac attacaggca tcttccagcg tcgggccacg ctgcgcttgc tgccagttac
    24781 caccgccaga ttgctgctga taaccgccgc caaactgtgc accgccctgc atcatgcgca
    24841 aaaactggtc aaactgggcg cgggagatcc ctaattcttc tgcaatgaca tacagcaccg
    24901 cccgttcatt cgggtgcagt gaaccatcag caaacgccgc ctgaatctgg atctccagaa
    24961 acatacgaat taagtcaaaa cgaccaaagc agacactgcg aaactggcgc atcttttcgc
    25021 gcagcgggta attgtctgat tttcccaccc ggaacgcgtt ttgcgccgca gtacgggaag
    25081 cgccatgaag gttcattcgg tccatcagct ggctggcgat atgaatatca gcctccgtga
    25141 cgcgaccttt ggatttggtt aaatgcccca tcacttcaaa agtggtggca aaaaacagcg
    25201 cctgacgctc acgctggttg gcgaaccacg ccattttacg gctacgggct ttatcaaaca
    25261 tatggccaat taacaggcct aacactacgc cccaaaagcc gccgcccatc agtaaggcca
    25321 cggccacgcc aatgattttt ccccaatact gcatatattc cccaaatcga cacacggata
    25381 tcagggctat ctcccacaat ataaaggtgc ttttaccgtt ttccggctgc agtcaattgt
    25441 gggacatcgc ctataatttg cattatcata cctgtcattc aatgccgtgc ctaacaccac
    25501 tgacgctatt cggacaggat taacactagc gtagagatga cgagtacgtt agtctctgac
    25561 cgtttgtcac gcgcaacgtt accgatgatg gaacaataaa atcaacgtat gaaaaaacgt
    25621 atccccactc tcctggccac catgattgcc accgcccttt atagtcaaca gggactggca
    25681 gccgacctcg cctcacagtg catgttgggc gtgccaagct atgaccgtcc tctggtacag
    25741 ggcgatacca atgacttacc cgtgactatc aatgctgacc acgcgaaagg ggactacccg
    25801 gatgacgccg tgtttactgg cagcgtggat atcatgcagg gtaacagccg tctgcaggcc
    25861 gacgaagtgc agctccatca aaaagaggca ccaggacaac cggagccggt acgaaccgtt
    25921 gatgcgctcg gtaatgtcca ttacgacgat aaccaggtga tcctcaaagg gccgaaaggc
    25981 tgggcgaatc tgaacaccaa agataccaac gtctgggaag gtgattacca gatggtgggt
    26041 cgccagggcc gcggtaaagc ggacctgatg aaacaacgtg gtgaaaaccg ctataccatt
    26101 ctggataacg gtagctttac ctcctgtctg ccgggttctg acacctggag cgtggtaggt
    26161 agcgaaatta ttcatgaccg cgaagaacaa gttgcggaga tctggaacgc ccgctttaag
    26221 gtgggtccag taccgatctt ttatagcccc tatttgcagt tgccggtggg tgacaaacgt
    26281 cgctctggtt tcttgatccc gaacgccaag tacaccacca ccaactactt tgagttctac
    26341 ctgccatatt actggaacat cgcgccaaat atggatgcca ccatcacgcc gcattatatg
    26401 catcgtcgtg gcaacatcat gtgggagaac gaattccgct acctctccca ggcgggcgct
    26461 ggcttgatgg aactggacta tctgccttca gataaagtct atgaagatga acacccgaac
    26521 gatgacagtt cacgtcgttg gttgttctac tggcaacact ccggggtcat ggatcaagtg
    26581 tggcgtttca acgtagacta caccaaggtc agcgatccta gctacttcaa tgatttcgat
    26641 aacaagtacg gttccagtac tgacggctac gcaacgcaaa aattcagcgt tggctatgcg
    26701 gtgcaaaact tcaatgccac cgtttcaacc aagcagttcc aggtctttag cgagcagaac
    26761 accagtagct actcggcaga gccgcagtta gacgttaact actaccagaa tgatgttggt
    26821 ccgtttgata cgcgtattta cggccaggca gtgcactttg ttaacaccag agacgacatg
    26881 cctgaagcaa cccgtgttca cctggaaccg accatcaatt tgccgctctc taataactgg
    26941 ggcagcatca ataccgaagc gaagttgctg gcaacccatt atcagcaaac caatcttgac
    27001 tggtataact ccagaaacac gaccaagctg gacgaatccg ttaaccgcgt tatgccgcaa
    27061 ttcaaagttg acggcaaaat ggtctttgaa cgcgatatgg aaatgctggc tccgggttat
    27121 acccaaacgc tggaaccgcg cgcgcagtat ttgtacgtgc cgtatcgcga tcagagcgac
    27181 atctataact acgactcgtc tctactgcaa tctgactact ctggcctgtt ccgggaccgg
    27241 acttacggcg gtcttgaccg tattgcctcc gctaaccagg tgacgaccgg tgtcacatct
    27301 cgcatatatg atgatgctgc cgttgaacat tttaatattt ccgttggtca aatctactat
    27361 ttcacggagt ctcgcactgg cgatgacaac ataacatggg agaatgacga caaaacgggc
    27421 tcactggtgt gggcaggcga tacttactgg cgtatctccg agcgttgggg attgcgtggc
    27481 gggattcagt acgatacacg tctggataac gtagcgacca gtaactccag cattgaatac
    27541 cgtcgggatg aagaccgtct ggtacagctg aattaccgtt acgccagccc ggaatatatt
    27601 caggctacgc tgcctaagta ctattccact gctgagcaat ataagaatgg tatttcgcag
    27661 gtaggtgctg tcgccagctg gccaattgcc gatcgttggt ccattgttgg ggcctactac
    27721 tacgacacca atgcgaacaa gcaagccgac tctatgttag gtgtgcaata cagctcctgc
    27781 tgctatgcaa ttcgcgtcgg ttacgagcgg aagctgaacg gttgggataa cgataaacaa
    27841 catgcggtat atgacaacgc aatcggcttt aacatcgaac ttcgcggcct gagctccaac
    27901 tacggtctgg gtacgcaaga gatgctgcgt tcgaacattc tgccgtatca aaacactttg
    27961 tgatttgttg atttaccacg taatccgcag tgcggttaat tgaaatggaa aaagtatgaa
    28021 gaactggaaa acgctgcttc tcggtatcgc catgatcgcg aataccagtt tcgctgcccc
    28081 ccaggtagtc gataaagtcg cagccgtcgt caataacggc gtcgtgctgg aaagcgacgt
    28141 tgatggatta atgcagtcgg taaaactgaa cgctgcgcag gcaaggcagc agcttcctga
    28201 tgacgcgacg ctgcgccacc aaatcatgga acgtttgatc atggatcaaa tcatcctgca
    28261 gatggggcag aaaatgggag tgaaaatctc cgatgagcag ctggatcagg cgattgctaa
    28321 catcgcgaaa cagaacaaca tgacgctgga tcagatgcgc agccgtctgg cttacgatgg
    28381 tctgaactac aacacctatc gtaaccagat ccgcaaagag atgattatct ctgaagtgcg
    28441 taacaacgag gtgcgtcgtc gcatcaccat cctgccgcag gaagtcgaat ccctggcgca
    28501 gcaggtgggt aaccaaaacg acgccagcac tgagctgaac ctgagccaca tcctgatccc
    28561 gctgccggaa aacccgactt ctgatcaggt gaacgaagcg gaaagccagg cgcgcgccat
    28621 tgtcgatcag gcgcgtaacg gcgctgattt cggtaagctg gcgattgctc attctgccga
    28681 ccagcaggcg ctgaacggcg gccagatggg ctggggccgt attcaggagt tgccgggtat
    28741 cttcgcccag gcattaagca ccgcgaagaa aggcgacatt gttggcccga ttcgttccgg
    28801 cgttggcttc catattctga aagttaacga cctgcgcggc gaaagcaaaa atatctcggt
    28861 gaccgaagtt catgctcgcc atattctgct gaaaccgtcg ccgatcatga ctgacgaaca
    28921 ggcccgtgtg aaactggaac agattgctgc cgatatcaag agtggtaaaa cgacttttgc
    28981 tgccgcagcg aaagagttct ctcaggatcc aggctctgct aaccagggcg gtgatctcgg
    29041 ctgggctaca ccagatattt tcgatccggc cttccgtgac gccctgaccc gcctgaacaa
    29101 aggtcaaatg agtgcaccgg ttcactcttc attcggctgg catttaatcg aactgctgga
    29161 tacccgtaat gtcgataaaa ccgacgctgc gcagaaggat cgtgcatacc gcatgctgat
    29221 gaaccgtaag ttctcggaag aagcagcaag ctggatgcag gaacaacgcg ccagcgccta
    29281 cgttaaaatc ctgagcaact aatggttaaa acccaacgtg ttgtgatcac tcccggcgag
    29341 cccgccggga ttggcccgga cttagttgtc cagcttgcac agcgtgagtg gccggtcgaa
    29401 ctggttgttt gtgccgatgc cactctcctt accgaccggg cagcgatgct cggtttgccg
    29461 ctcaccctcc gcccttattc ccccaactcc cctgcacaac cgcaaactgc gggcacatta
    29521 acgctacttc ctgtcgcgct acgcgaatct gtcactgcgg ggcagttagc gattgaaaat
    29581 gggcattacg tggtggagac gctggcgcga gcgtgtgatg gctgtctgaa cggtgaattt
    29641 gctgcgctga tcacaggccc cgtgcataaa ggcgtcatta acgacgcagg tattccgttt
    29701 actggtcata ccgagttttt cgaagagcgc tcgcaggcga aaaaagtggt gatgatgctg
    29761 gcgaccgaag aacttcgcgt ggcgctggca acgacgcatt taccgctgcg cgatatcgca
    29821 gatgctatca cccctgcact tttgcacgaa gtgattgcta ttttgcatca cgatttgcgt
    29881 acaaaatttg gtattgccga accgcgcatt ctggtctgcg ggctgaatcc gcacgcgggc
    29941 gaaggcggtc atatgggtac ggaagagata gacaccatta ttccggtgct cgacgagctg
    30001 cgggcgcagg ggatgatact caacgggccg ctgcctgccg ataccctgtt tcagccgaaa
    30061 tatctcgata acgccgacgc cgtgctggcg atgtaccacg atcagggtct tcccgtgcta
    30121 aaataccagg gcttcgggcg cggtgtgaac attacgctgg gcctgccctt tattcgcaca
    30181 tcagtggacc acggcaccgc gcttgaactg gcgggacgtg gcgaagccga tgtcggcagt
    30241 tttattacgg cgcttaatct cgccatcaaa atgattgtta acacccaatg aataatcgag
    30301 tccaccaggg ccacttagcc cgtaaacgct tcgggcaaaa ctttctcaac gatcagttcg
    30361 tgatcgacag cattgtttct gccattaacc cgcaaaaggg ccaggcaatg gtcgaaatcg
    30421 gccccggtct ggcggcattg accgagccgg tcggcgaacg tctggaccag ctgacggtca
    30481 tcgaacttga ccgcgatctg gcggcacgtc tgcaaacgca tccattctta ggcccgaaac
    30541 tgacgattta tcagcaggat gcgatgacct ttaactttga cgaactggcc gagaaaatgg
    30601 gtcagccgct gcgtgttttc ggcaacctgc cttataacat ctccacgccg ttgatgttcc
    30661 atctgtttag ctatactgat gccattgccg acatgcactt tatgttgcaa aaagaggtgg
    30721 tgaatcgtct ggttgcagga ccgaacagca aagcgtatgg tcgattaagc gtcatggcgc
    30781 aatactattg caacgtgatc ccggtactgg aagttccgcc gtcagccttt acaccaccac
    30841 ccaaagtgga ttccgccgtc gtgcgcctgg ttcctcatgc aacgatgcct cacccggtta
    30901 aagatgttcg tgtgttgagc cgcatcacca ccgaagcctt taaccagcgt cgtaaaacca
    30961 ttcgtaacag cctcggcaac ctgtttagcg tcgaggtgtt aacgggaatg gggatcgacc
    31021 cggcgatgcg agcggaaaat atctctgtcg cgcaatattg ccagatggcg aactatctgg
    31081 cggagaacgc gcctttgcag gagagttaac gatgatcaat tcgccccgag tgtgtattca
    31141 ggttcaaagc gtctacattg aggcacaatc ttcacctgat aatgaacgtt acgtttttgc
    31201 ttataccgta accatacgca atctggggcg agcgccagtg cagttgttgg ggcgttactg
    31261 gctgatcacc aatggcaatg gccgtgaaac cgaagtccag ggcgaaggag tggttggcgt
    31321 ccagccactt atcgcgcctg gcgaagagta ccagtacacc agcggtgcaa tcattgaaac
    31381 cccgctgggc accatgcagg gtcactacga aatgatcgat gaaaatggcg tccctttcag
    31441 catcgacatt cccgtattcc gactcgccgt tcccacactc attcattaaa agaatatggc
    31501 gacatacctt attggcgacg ttcatggttg ttacgatgaa ctgatcgcat tgctgcataa
    31561 agtagaattt acccctggga aagataccct ctggctgacg ggcgatctgg tcgcgcgcgg
    31621 cccgggttcg ctggatgttc tgcgctatgt gaaatcctta ggcgacagcg tacgtctggt
    31681 gctgggcaat cacgatctgc atctgctggc ggtatttgcc gggatcagcc gcaataaacc
    31741 gaaagatcgc ctgacaccgc tgctggaagc gccggatgcc gacgagctgc ttaactggct
    31801 gcgtcgccag cctttgctgc aaatcgacga agagaaaaag ttggtgatgg cccacgcagg
    31861 gatcacgccg cagtgggatc tacagaccgc caaagagtgc gcgcgcgatg tagaagcggt
    31921 gctatcgagt gactcctatc ccttctttct cgacgctatg tacggcgata tgccaaataa
    31981 ctggtcaccg gaattgcggg ggctgggaag actgcgtttt atcaccaacg cctttacccg
    32041 tatgcgtttt tgcttcccga acggtcaact ggatatgtac agcaaagaat cgccggaaga
    32101 ggcccctgcc ccactgaaac cgtggtttgc gattcctggc cctgtcgctg aagaatacag
    32161 catcgccttt ggtcactggg catcgctgga gggcaaaggt acgccggaag gtatatacgc
    32221 gctggatacc ggctgctgct ggggtggtac attaacctgc ctgcgctggg aagataaaca
    32281 gtattttgtc cagccgtcga accggcataa ggatttgggc gaagcggcgg cgtcttaaac
    32341 acagcctgat ataggaaggc cggataagac gcgaccggcg tcgcatccgg cactagccgt
    32401 aaattctata caaaattacc gccgctccag aatctcaaag caatagctgt gagagttctg
    32461 cgcatcagca tcgtggaatt cgctgaatac cgattcccag tcatccggct cgtaatccgg
    32521 gaaatgggtg tcgccttcca cttctgcgtc gatatgcgtc agatacagtt tctgcgcttt
    32581 tggcaggaac tgctcataaa cgcgaccgcc gccaatcacc atgatttctg gtacgtcacc
    32641 acacgccgcg atggcttcat ccaccgactt cacccacgtt acgcgatcgt ccgtacccgg
    32701 ttgactgctg aggataatat ttttgcgtcc tggcaacgga cgaccgattg attcccaggt
    32761 atggcggccc ataatcacgg gtttatttaa ggtgttgcgt ttaaaccagg cgagatcggc
    32821 aggcaggttc cacggcatgg cgttttccat gccgataacg cgatctaccg ctaacgccgc
    32881 aatcagactg atcattgaga tttcccgata aaaaaaattg tcgccactat acgtaaagcg
    32941 taaaccgtcg tcgactggtg cgaggatgat gttgaggaaa attttatatt ctgctggcga
    33001 gtccacgctc tctccctgga ctcgccgcat tacaatgaaa caaaaacaaa cagttagctg
    33061 taaagtgtga tttatgtcac tctttattag gatgagggtt tcgtttccgg ttcatccgcc
    33121 atgttgccgg tatgtttacc ttcttcggtt ccctgccagc catgtcgttg aattaatgac
    33181 agatgttcgc ggtcctcggt aatgatctca cttaacatcg cgctggtgcg tttatagacc
    33241 gccgcgcggg ctttggtgtc gttctcaacc attgccatct cttccaccat ctgaatatta
    33301 aagcggcgga acacatcggc acgttctcgc gcttcatacg gccccagacc taaactttcc
    33361 agtgccagac gcccggtttt cagcgcacct tcgaaggttt cacgctccgg cttttcaacg
    33421 cctgcctgac gcaaacgaat gtagtggtcg acatcgcggg cgcgggcaat aatctgcaaa
    33481 tgcgggaagt gttctttcac catctctgtc agttgcaggt tggtttgcgg atcgtcgatg
    33541 gcgttaatca gcacttccgc tttcgccgct cccgcagatt ccagtaaatc catccgcgtg
    33601 gcatcgccat aaaacacttt cataccaaat ttacgcaagg tttcgatatg gtccggatcg
    33661 tgatcgagca ccaccatttt caccccgctg gagagcagta aacgtccggt gatctgccca
    33721 aaacgaccga atccggcaat gattacccgc ggctgttctt cgtcgatctc atcggcttca
    33781 cgcgcctctt cagtagaaga ttgctcaagg cgattgagga tcaccagcag aatcggcgtt
    33841 gccgccatcg acagcgccac cgccagggtc agcgatttcg cccactccgg ctccagcaca
    33901 ttcgccatct gcgccgcgcc aaataccaca aaggcaaact cactgccctg ccctaacaac
    33961 accgcaaacc aacgacgctg tttatttggc acttgcaacg gtcgggcaat cagccacagc
    34021 atggcgattt tgatgatgag gaaaccgagc agcaaaatga caatgcgcaa tgggttttca
    34081 agcagcgtgc caaagtctat cgacatgcca acaccgatga aaaacagccc caacagcaaa
    34141 cctttaaagg gttcgatatc gctctccagc gcatgacggt attccgagct tgccagcagt
    34201 acgcccgcca gaaacgcgcc catcgccatc gacaagccga cctcttccag cagcaaacca
    34261 aagccaaaca cgaggaataa cgccacggca ctaaacactt cccgcaagcc agagcgggct
    34321 acaaaacgca gcgccggacg cgtgacatag cgccccagca ataccaccag caccagcgca
    34381 cccgccactt ttaacgccga gagagcaaat gcgcccatcg tcgtcgaggc actgctcgtt
    34441 gccagtagcg gaatcatcgc caccagcggg atcgccgcga tatcctggaa cagcagcacc
    34501 gcaaaggcac tgcgacccat ttgcgtcacc atcagattgc gttcattcat cgcctgcatg
    34561 gcaatcgccg tagaggagag cgccagcgtc atgccgatca attccgcgac ctgccagcgc
    34621 agcccaagta acatgcagaa cagccccagc aggccgccgc aaatcaccat ctgcaatgcg
    34681 ccaccgccga acactgccgc acgcagcttc cacagccttt gtggatcgag ttcgaggccg
    34741 ataataaaca gcatcagcac caccccaatc tcggcaaagt gcagaataga ttcggcatcg
    34801 gtcaccagtc gcagccccca cgggccaata atgcagccgg cgatcaggta gccaagtacc
    34861 gatcccagac caagacgtac cgcaatgggt acaatcagcg ctgccgaacc gagataaatc
    34921 agcgcctgaa tcagcgtatg gctatccatg atgggcctcc tgccattcca gcagacgttg
    34981 cttatagtga cgcgcctgcc cttcgagggt ttcgtcgtca caaataaagg tgcagtgcat
    35041 ggcaaacggt ggcagccagt tcagcccgca gtagattgcc gtcgcctgta gcggctgcga
    35101 cagcacatca aagcccggat gcgcaccaat ttcaaaatgg ctttccccgc cgccggtcgt
    35161 caccgcccac agcaaatgtt tgccatgcag cgccttgccg ccgtgaccgt aagcccagcc
    35221 gtgcgacaaa actttatcga tccaaagttt aagaagcgga ggaatgctgt accactgcat
    35281 cggatgctgc cagacgatca gatcggcgcg agacagcgcc tcctgctcgg cggcaatatc
    35341 gatattgaag tcaggataga gttgataaag agagcgaatt tcgacgcctt ccagcgtcct
    35401 tgcctgttca agcatccgtt tattcgcatg ggaatgatgc ggatacggat gcgcataaat
    35461 tataagaatc ataggtagcc cgcgtgatta cgcctttgtt ttcccacaaa gtgtagtcat
    35521 atattcacgc ggcttatagt caataatatt gattcagaaa agagagaaat ctgaacaatt
    35581 taccccattc tctgcccgcg gatcgtcata ttgctggttt gcgccaatga catccctcga
    35641 tgtctccggg gcaaacgcta cggaaatcaa caagccaaac agcgagatac ccgcccccat
    35701 tagcatcgtg ttactgatac cgtaattatt gataaagatc ggcagtgccc aggtcgaaac
    35761 aatggtgcca atacggctta aggacataat cacgcccacg gcagaggcgc ggatatctgt
    35821 cgggaagagt tcattaggat agagccactg caaattaccc ggcccgccag agaaaaaggc
    35881 atacaccgca aaggccatca ctaccagcca gatccccata tccgggatca gccccaaaac
    35941 cgccagcgcc agcgtcatca tggcaaagct gccaatcaac aatggacgcc gtccggcagt
    36001 gtttaaccac agcatcggcg gaatacagcc gagcataaag aacaggctaa tcaccacgtt
    36061 ccccagcgcc gcgtttttgc caacacccaa tcccaacaaa ccaacgattt gcgggccaaa
    36121 ggtgtaaatg gcgaacattg ggatcacctg gcaggtccag atggcggcaa caaacagaac
    36181 aaaaggaaaa tggcggcgat taaacagatc gcgaaaacgg gtttgctgcg gctgctcttc
    36241 atcgaaagcc accggttcgc caaacagttt tatcatcatc tcttcgcact cttttactcg
    36301 ccctttgcgt aataaccagc ggggagattc aggcagttcg aatcgaccaa tcaaaatcaa
    36361 caaacagggg atcgccgcgc tacccagcat ccagcgccag ccgccttcca catcataaag
    36421 ccagtagccg accagatcgg cgcaggtcgc gccgacatac cacatggcgg cgataaagct
    36481 gatggaaaat gcccgctgac gggtactgga gaactcggtg atcattgagg tggcgatggg
    36541 ataatcggca ccgatgacaa tgccgataag tacccgcatc accaacagtt cgacggggga
    36601 tgaaacaaac atcgtcgcca ccgatatcac gccgatgacg atgatatcaa tgaggaacat
    36661 tttgcgccgt ccgactttat cggaaatata gccaaacagc gatgtgccaa cgaacagccc
    36721 ggcgagcgtt cccgcgccca acaagccaat ccagtcagcg tccagtttta gcgccggagt
    36781 cagttgctcc agcgccacgc caatcattac cagtacataa ccatccagaa ac
//
LOCUS       DAJVSY010000020        36625 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.020, whole genome shotgun sequence.
ACCESSION   DAJVSY010000020 DAJVSY010000000
VERSION     DAJVSY010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 36625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36625
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.020"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            93..989
                     /locus_tag="OQQ19_000915"
     CDS             93..989
                     /locus_tag="OQQ19_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417396.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1802630.1"
                     /translation="MDIFISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEE
                     QIGYTLFTRKDNNISLNKAGQELYQKLFPVYQRLSAIDNEIHNSGRRSREIVIGIDNT
                     YPTIIFDQLISLGDKYEGVTAQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELEN
                     LTISELPPLRLGFLVSRRYEERQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGIN
                     PTIIYRPYSFMAKISAVERGHFLTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSI
                     RNHRYTATMLQHIAEDRDGTNH"
     gene            complement(986..2464)
                     /gene="scpC"
                     /locus_tag="OQQ19_000916"
     CDS             complement(986..2464)
                     /gene="scpC"
                     /locus_tag="OQQ19_000916"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionyl-CoA:succinate CoA transferase"
                     /protein_id="HCS1802631.1"
                     /translation="METQWTRMTADEAAEIIQHNDMVAFSGFTPAGSPKALPTAIARR
                     ANEQHEAKKPYQIRLLTGASISAAADDVLSDADAVSWRAPYQTSSGLRKKINQGAVSF
                     VDLHLSEVAQMVNYGFFGDIDVAVIEASALAPDGRVWLTSGIGNAPTWLLRAKKVIIE
                     LNHYHDPRVAELADIVIPGAPPRRNSVSIFHAMDRVGTRYVQIDPKKIVAVVETNLPD
                     AGNMLDKQNPMCQQIADNVVTFLLQEMAHGRIPPEFLPLQSGVGNINNAVMARLGENP
                     EIPPFMMYSEVLQESVVHLLETDKISGASASSLTISADSLRKIYDNMDYFASRIVLRP
                     QEISNNPEIIRRLGVIALNVGLEFDIYGHANSTHVAGVDLMNGIGGSGDFERNAYLSI
                     FMAPSIAKEGKISTVVPMCSHVDHSEHSVKVIITEQGIADLRGLSPLQRARTIIDNCA
                     HPMYRDYLHRYLENAPGGHIHHDLSHVFDLHRNLIATGSMLG"
     gene            complement(2488..3273)
                     /gene="scpB"
                     /locus_tag="OQQ19_000917"
     CDS             complement(2488..3273)
                     /gene="scpB"
                     /locus_tag="OQQ19_000917"
                     /EC_number="7.2.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311816.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA decarboxylase"
                     /protein_id="HCS1802632.1"
                     /translation="MSYQYVNVATINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN
                     RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISM
                     VEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKEL
                     IFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGE
                     AHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFVGH"
     gene            complement(3284..4279)
                     /gene="meaB"
                     /locus_tag="OQQ19_000918"
     CDS             complement(3284..4279)
                     /gene="meaB"
                     /locus_tag="OQQ19_000918"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HCS1802633.1"
                     /translation="MINEATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLL
                     DAIMPYCGNTLRLGVTGTPSAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSIL
                     GDKIRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQS
                     ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE
                     SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIEFKTALTASGRLQQVRQQQSVE
                     WLRKQTEEEVLNHLFANEDFDRYYRQTLLAVKNNTLSPRTGLRQLSEFIQTQYFD"
     gene            complement(4272..6416)
                     /gene="scpA"
                     /locus_tag="OQQ19_000919"
                     /pseudo
     CDS             complement(4272..6416)
                     /gene="scpA"
                     /locus_tag="OQQ19_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417392.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase"
     gene            complement(6620..7513)
                     /gene="argP"
                     /locus_tag="OQQ19_000920"
     CDS             complement(6620..7513)
                     /gene="argP"
                     /locus_tag="OQQ19_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator ArgP"
                     /protein_id="HCS1802634.1"
                     /translation="MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLEN
                     MFGQPLLVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNADSL
                     ATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLG
                     ALDYLFVSSKPFAEKYFPNGVTRSALLKAPVVAFDHLDDMHQAFLQQNFDLPPGSVPC
                     HIVNSSEAFVQLARQGTTCCMIPHLQIEKELASGELIDLTPGLFQRRMLYWHRFAPES
                     RMMRKVTDALLDYGHKVLRQD"
     gene            7896..8555
                     /gene="rpiA"
                     /locus_tag="OQQ19_000921"
     CDS             7896..8555
                     /gene="rpiA"
                     /locus_tag="OQQ19_000921"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HCS1802635.1"
                     /translation="MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKG
                     QIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTR
                     EKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQGV
                     VTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIV
                     K"
     gene            8810..10042
                     /gene="serA"
                     /locus_tag="OQQ19_000922"
     CDS             8810..10042
                     /gene="serA"
                     /locus_tag="OQQ19_000922"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HCS1802636.1"
                     /translation="MAKVSLEKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDD
                     EQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVF
                     NAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYG
                     HIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTK
                     NMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDP
                     FTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPL
                     HGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEK
                     ALQAMKAIPGTIRARLLY"
     gene            10271..10330
                     /gene="ibsC"
                     /locus_tag="OQQ19_000923"
     CDS             10271..10330
                     /gene="ibsC"
                     /locus_tag="OQQ19_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsC"
                     /protein_id="HCS1802637.1"
                     /translation="MMRLVIILIVLLLISFGAY"
     gene            10663..10722
                     /locus_tag="OQQ19_000924"
     CDS             10663..10722
                     /locus_tag="OQQ19_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS1802638.1"
                     /translation="MMRLAIILIVLLLISFPAY"
     gene            complement(10823..11425)
                     /locus_tag="OQQ19_000925"
     CDS             complement(10823..11425)
                     /locus_tag="OQQ19_000925"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HCS1802639.1"
                     /translation="MTQLPELPLTLSRQEIRKMIRQRRRALTPEQQQEMGQQAATRMM
                     TYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRVYLPVLHPFSAGNLLFLNYHPQ
                     SELVMNRLKIHEPKLDVRDVLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQ
                     HYKTQPVGYAHDCQLVEKLPVEEWDIPLPAVVTPSKVWEW"
     gene            complement(11446..11629)
                     /gene="ssrS"
                     /locus_tag="OQQ19_000926"
     ncRNA           complement(11446..11629)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="OQQ19_000926"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(11671..12000)
                     /gene="zapA"
                     /locus_tag="OQQ19_000927"
     CDS             complement(11671..12000)
                     /gene="zapA"
                     /locus_tag="OQQ19_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HCS1802640.1"
                     /translation="MSAQPVDIQIFGRSLRVNCPPDQRDALNQAADDLNQRLQDLKER
                     TRVTNTEQLVFIAALNISYELAQEKAKTRDYAASMEQRIRMLQQTIEQALLEQGRITE
                     KTNQNFE"
     gene            12168..12746
                     /gene="ygfB"
                     /locus_tag="OQQ19_000928"
     CDS             12168..12746
                     /gene="ygfB"
                     /locus_tag="OQQ19_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708672.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein YgfB"
                     /protein_id="HCS1802641.1"
                     /translation="MSIQNEMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGGNDDS
                     SWLPLLHDLTNEGMAFGHELAQALRKMHSATSDALQDDGFLFQLYLPDGDDVSVFDRA
                     DALAGWVNHFLLGLGVTQPKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSLEE
                     IIEYVRVAALLCHDTFTHPQPTAPEVQKPTLH"
     gene            12772..14097
                     /gene="pepP"
                     /locus_tag="OQQ19_000929"
     CDS             12772..14097
                     /gene="pepP"
                     /locus_tag="OQQ19_000929"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HCS1802642.1"
                     /translation="MSEISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPY
                     RQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEK
                     LGVDRALAFSEINQQLYQLLNGLDVVYHAQGEYAYADEIMNSALEKLRKGSRQNLTAP
                     ATMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH
                     EFNRHGARYPSYNTIVGSGENGCILHYTENESELRDGDLVLIDAGCEYKGYAGDITRT
                     FPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKG
                     DVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPD
                     AEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEIEALMAAARKQ"
     gene            14094..15272
                     /gene="ubiH"
                     /locus_tag="OQQ19_000930"
                     /gene_synonym="visB"
     CDS             14094..15272
                     /gene="ubiH"
                     /locus_tag="OQQ19_000930"
                     /gene_synonym="visB"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HCS1802643.1"
                     /translation="MSVIIVGGGMAGATLALAISRLSHGALPVHLIEATAPESHAHPG
                     FDGRAIALAAGTCQQLARIGVWQSLADCATAITTVHVSDRGHAGFVTLAAEDYQLAAL
                     GQVVELHNVGQRLFALLRKAPGVTLHCPDRVANVARTQSHVEVTLESGETLTGRVLVA
                     ADGTHSALATACGVDWQQEPYEQLAVIANVATSVAHEGRAFERFTQHGPLAMLPMSDG
                     RCSLVWCHPLERREEVLSWSDEKFCRELQSAFGWRLGKITHAGKRSAYPLALTRAARA
                     ITHRTVLVGNAAQTLHPIAGQGFNLGMRDVMSLAETLTQAHERGEDIGDYGILCRYQQ
                     RRQSDREATIGVTDSLVHLFANRWAPLVVGRNIGLMTMELFTPARDVLAQRTLGWVAR
                     "
     gene            15295..16497
                     /gene="ubiI"
                     /locus_tag="OQQ19_000931"
                     /gene_synonym="visC"
     CDS             15295..16497
                     /gene="ubiI"
                     /locus_tag="OQQ19_000931"
                     /gene_synonym="visC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent 2-octaprenylphenol hydroxylase"
                     /protein_id="HCS1802644.1"
                     /translation="MQCVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADA
                     PPQLRVSAINAASEKLLTRLGVWQDILSRRASCYHGMEVWDKDSFGHISFDDQSMGYS
                     HLGHIVENSVIHYALWNKAQQSSDITLLAPAELQQVAWGENETFLTLKDGSMLTARLV
                     IGADGANSWLRNKADISLTFWDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLPLS
                     DPHLCSIVWSLSPEEAQRMQQASEDEFNRALNIAFDNRLGLCKVESARQVFPLTGRYA
                     RQFAAHRLVLVGDAAHTIHPLAGQGVNLGFMDAAELIAELKRLHRQGKDIGQYIYLRR
                     YERSRKHSAALMLAGMQGFRDLFSGTNPAKKLLRDIGLKLADTLPGVKPQLIRQAMGL
                     NDLPEWLR"
     gene            complement(16571..16654)
                     /locus_tag="OQQ19_000932"
     CDS             complement(16571..16654)
                     /locus_tag="OQQ19_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802645.1"
                     /translation="MSKNTKSKNNDIRKYNAKTEVKLVYFK"
     gene            16944..18038
                     /gene="gcvT"
                     /locus_tag="OQQ19_000933"
     CDS             16944..18038
                     /gene="gcvT"
                     /locus_tag="OQQ19_000933"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HCS1802646.1"
                     /translation="MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDA
                     GMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVY
                     YFTEDFFRLVVNSATREKDLSWITQHAEPFGIEITVRDDLSMIAVQGPNAQAKAATLF
                     NDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKP
                     CGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIAWEPADRDFIGREALEVQREH
                     GTEKLVGLVMTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI
                     GETAIVQIRNREMPVKVTKPVFVRNGKAVA"
     gene            18062..18451
                     /gene="gcvH"
                     /locus_tag="OQQ19_000934"
     CDS             18062..18451
                     /gene="gcvH"
                     /locus_tag="OQQ19_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HCS1802647.1"
                     /translation="MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVD
                     LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWI
                     FKIKASDESELESLLDATAYEALLEDE"
     gene            18570..21443
                     /gene="gcvP"
                     /locus_tag="OQQ19_000935"
     CDS             18570..21443
                     /gene="gcvP"
                     /locus_tag="OQQ19_000935"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HCS1802648.1"
                     /translation="MTQTLSQLENSGAFIERHIGPDAAQQQEMLNAVGAQSLNALTGQ
                     IVPKDIQLATPPQVGAPATEYAALAELKAIASRNKRFTSYIGMGYTAVQLPPVILRNM
                     LENPGWYTAYTPYQPEVSQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAM
                     AKRVSKLKNANRFFVASDVHPQTLDVVRTRAETFGFEVIVDDAQKVLDHQDVFGVLLQ
                     QVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVP
                     MGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNI
                     CTSQVLLANIASLYAVYHGPVGLKRIANRIHRLTDILAAGLQQKGLKLRHAHYFDTLC
                     VEVADKAGVLARAEAAEINLRSDILNAVGITLDETTTRENVMQLFSVLLGDNHGLEID
                     TLDKDVAHDSRSIQPAMLRDDEILTHPVFNRYHSETEMMRYMHSLERKDLALNQAMIP
                     LGSCTMKLNAAAEMIPITWPEFAELHPFCPPEQAEGYQQMIAQLADWLVKLTGYDAVC
                     MQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPASAHGTNPASAHMAGMQVVVVAC
                     DKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDG
                     ANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVV
                     QIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQD
                     AFPVLYTGRDGRVAHECILDIRPLKEETSISELDIAKRLIDYGFHAPTMSFPVAGTLM
                     VEPTESESKVELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAEWAHP
                     YSHEVAVFPAGVADKYWPTVKRLDDVYGDRNLFCSCVPISEYQ"
     gene            21709..22452
                     /locus_tag="OQQ19_000936"
                     /pseudo
     CDS             21709..22452
                     /locus_tag="OQQ19_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417378.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
     gene            complement(22509..23942)
                     /gene="bglA"
                     /locus_tag="OQQ19_000937"
     CDS             complement(22509..23942)
                     /gene="bglA"
                     /locus_tag="OQQ19_000937"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708664.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase BglA"
                     /protein_id="HCS1802649.1"
                     /translation="MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHG
                     VPREITKEVLPGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEA
                     QPNEEGLKFYDSLFDELLKYNIEPVITLSHFEIPLHLVQQYGSWTNRKVVDFFVRFAE
                     VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHDNPEETMYQVLHHQFV
                     ASALAVKAARRINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGY
                     YPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMINAVKAEGGTGDAISGFE
                     GSVPNPYVKASDWGWQIDPVGLRYALCELYERYQRPLFIVENGFGAYDKVEEDGSIND
                     DYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDD
                     GTGDMSRSRKKSFNWYKEVIASNGEKL"
     gene            23987..24298
                     /locus_tag="OQQ19_000938"
     CDS             23987..24298
                     /locus_tag="OQQ19_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HCS1802650.1"
                     /translation="MQPNDITFSQRFQDDILAGRKTITIRDESESHFKTGDVLRVGRF
                     EDDDYFCTIEVTATSTVTLDTLTEKHAEQENMTLTELIKVIADIYPGQTQFYVIEFKC
                     L"
     gene            24462..25121
                     /locus_tag="OQQ19_000939"
     CDS             24462..25121
                     /locus_tag="OQQ19_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HCS1802651.1"
                     /translation="MVQKPLIKQGYSLAEEIANSVSHGIGLVFGIVGLVLLLVQAVDL
                     NASATAITSYSLYGGSMILLFLASTLYHAIPHQRAKMWLKKFDHCAIYLLIAGTYTPF
                     LLVGLDSPLARGLMIVIWSLALLGILFKLTIAHRFKILSLVTYLAMGWLSLVVIYEMA
                     VKLAAGSVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSMCHFLAIYLYIGQ
                     A"
     gene            complement(25317..26297)
                     /gene="ygfZ"
                     /locus_tag="OQQ19_000940"
     CDS             complement(25317..26297)
                     /gene="ygfZ"
                     /locus_tag="OQQ19_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-modifying protein YgfZ"
                     /protein_id="HCS1802652.1"
                     /translation="MAFTPFPPRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQ
                     VTADVSQMTENQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLTELKKYA
                     VFSKVTIAADDERVLLGVAGFQARAALANLFSELPSREKQVVKEGATTLLWFEHPAER
                     FLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQA
                     LGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAGEDLELKMGENWRRT
                     GTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDANTLHIEPLPYSLEE"
     gene            26540..26806
                     /gene="sdhE"
                     /locus_tag="OQQ19_000941"
     CDS             26540..26806
                     /gene="sdhE"
                     /locus_tag="OQQ19_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000354044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD assembly factor SdhE"
                     /protein_id="HCS1802653.1"
                     /translation="MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFI
                     RLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRNRERGPVAI"
     gene            26787..27194
                     /locus_tag="OQQ19_000942"
     CDS             26787..27194
                     /locus_tag="OQQ19_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin CptA"
                     /protein_id="HCS1802654.1"
                     /translation="MVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMV
                     LLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQEWSIVKAPWMIKSGMMLRLRSD
                     GGKRQHLWLAADSMDEAEWRDLRRILLQQETQR"
     gene            complement(27234..27755)
                     /gene="fldB"
                     /locus_tag="OQQ19_000943"
     CDS             complement(27234..27755)
                     /gene="fldB"
                     /locus_tag="OQQ19_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldB"
                     /protein_id="HCS1802655.1"
                     /translation="MNMGLFYGSSTCYTEMAAEKIRDIIGPELVTLHNLKDDSPKLME
                     QYDVLILGIPTWDFGEIQEDWEAVWDQLDDLNLEGKIVALYGLGDQLGYGEWFLDALG
                     MLHDKLSTKGVKFVGYWPTEGYEFTSPKPVIADGQLFVGLALDETNQYDLSDERIQSW
                     CEQILNEMAEHYA"
     gene            27867..28763
                     /gene="xerD"
                     /locus_tag="OQQ19_000944"
     CDS             27867..28763
                     /gene="xerD"
                     /locus_tag="OQQ19_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HCS1802656.1"
                     /translation="MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG
                     LTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLAS
                     PKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI
                     SLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQM
                     TRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTT
                     QIYTHVATERLRQLHQQHHPRA"
     gene            28788..29498
                     /gene="dsbC"
                     /locus_tag="OQQ19_000945"
     CDS             28788..29498
                     /gene="dsbC"
                     /locus_tag="OQQ19_000945"
                     /EC_number="5.3.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000715205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional protein-disulfide
                     isomerase/oxidoreductase DsbC"
                     /protein_id="HCS1802657.1"
                     /translation="MKKGFMLFTLLAAFSGFAQADDAAIQQTLAKMGIKSSDIQPAPV
                     AGMKTVLTNSGVLYITDDGKHIIQGPMYDVSGAAPVNVTNKMLLKQLNALEKEMIVYK
                     APQEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLESQAEQQMKAIW
                     CAKDKNKAFDDVMAGKAATPASCDIDIADHYALGVQLGVSGTPAIVLSNGTLVPGYQP
                     PKEMKEFLDEHQKMTSGN"
     gene            29504..31237
                     /gene="recJ"
                     /locus_tag="OQQ19_000946"
     CDS             29504..31237
                     /gene="recJ"
                     /locus_tag="OQQ19_000946"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HCS1802658.1"
                     /translation="MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERS
                     VKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSN
                     IDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTD
                     HHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERGIA
                     IPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQ
                     KLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQ
                     GMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG
                     DGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFELFQQRFG
                     ELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ
                     QRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRS
                     LQIIIDNIWPI"
     gene            31328..32426
                     /gene="prfB"
                     /locus_tag="OQQ19_000947"
     CDS             join(31328..31402,31404..32426)
                     /gene="prfB"
                     /locus_tag="OQQ19_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311790.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HCS1802659.1"
                     /translation="MFEINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQP
                     DVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAE
                     LDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRG
                     FKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFS
                     SAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQN
                     DRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK
                     DLRTGVETRNTQAVLDGSLDQFIEASLKAGL"
     gene            32436..33953
                     /gene="lysS"
                     /locus_tag="OQQ19_000948"
     CDS             32436..33953
                     /gene="lysS"
                     /locus_tag="OQQ19_000948"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HCS1802660.1"
                     /translation="MSEQHAQGADAVVDLNNELKTRREKLANLREQGIAFPNDFRRDH
                     TSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARD
                     DLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGL
                     QDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGA
                     AARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFT
                     MMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIK
                     KYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITE
                     YPAEVSPLARRNDINPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAG
                     DDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMRPVK"
     gene            complement(33996..34544)
                     /gene="idi"
                     /locus_tag="OQQ19_000949"
     CDS             complement(33996..34544)
                     /gene="idi"
                     /locus_tag="OQQ19_000949"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HCS1802661.1"
                     /translation="MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKG
                     QLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDF
                     RYRATDPNGIVENEVCPVFAARTNSALQINDDEVMDYQWCDLADVLHGIDATPWAFSP
                     WMVMQAANSEARKLLSAFAQHN"
     gene            34599..34670
                     /locus_tag="OQQ19_000950"
     CDS             34599..34670
                     /locus_tag="OQQ19_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802662.1"
                     /translation="MINQVSVYRQPPVLSGCRQVKTI"
     gene            complement(34667..34792)
                     /locus_tag="OQQ19_000951"
     CDS             complement(34667..34792)
                     /locus_tag="OQQ19_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802663.1"
                     /translation="MNLLMRAIFSLLLLFTLSIPVISDCVAMAIESRFKYMMLLF"
     gene            complement(34794..36242)
                     /gene="uacT"
                     /locus_tag="OQQ19_000952"
     CDS             complement(34794..36242)
                     /gene="uacT"
                     /locus_tag="OQQ19_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417364.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urate/proton symporter UacT"
                     /protein_id="HCS1802664.1"
                     /translation="MSAIDSQLLSSSGQDRPTDEVDRILSPGKLIILGLQHVLVMYAG
                     AVAVPLMIGDRLGLSKEAIAMLISSDLFCCGIVTLLQCIGIGRFMGIRLPVIMSVTFA
                     AVTPMIAIGMNPDIGLLGIFGATIAAGFITTLLAPLIGRLMPLFPPLVTGVVITSVGL
                     SIIQVGIDWAAGGKGNPQYGNPVYSGISFAVLIFILLITRYAKGFMSNVAVLLGIVFG
                     FLLSWMMNEVNLSGLHDALWFAIVTPMSFGMPIFDPVSILTMTAVLIIVFIESMGMFL
                     ALGEIVGRKLSSHDIIRGLRVDGVGTMIGGTFNSFPHTSFSQNVGLVSVTRVHSRWVC
                     ISSGIILILFGMVPKMAVLVASIPQFVLGGAGLVMFGMVLATGIRILSRCNYTTNRYN
                     LYIVAISLGVGMTPTLSHDFFSKLPAVLQPLLHSGIMLATLSAVVLNVFFNGYQHHAD
                     LVKESVSDKDLKVRTVRMWLLMRKLKKNEHGE"
BASE COUNT         8822 a         9224 c         9798 g         8781 t
ORIGIN      
        1 ccccccggat catggacgac tgggggcagt aatcatgccg ggtctggctg gctaacaccc
       61 cattataagg ggtacgaata aagtaacggg ggatggacat ttttatttcg aaaaagatgc
      121 gcaatttcat tttattagcg caaaccaata atattgcccg ggcggcagaa aaaatccata
      181 tgacggcttc gccatttggt aaaagcattg ccgcgctgga agaacaaatt ggctatacgc
      241 tatttacccg caaagataat aatatcagcc tcaataaagc cggtcaggaa ctgtatcaaa
      301 aactgttccc ggtttatcaa cgactttctg cgattgataa tgaaatccat aactcagggc
      361 gtcgttcacg agaaattgtg attggcatag ataatactta tccgacaatt attttcgatc
      421 agttgattag tctcggagat aagtatgaag gcgtgaccgc ccagccagtt gagttcagcg
      481 aaaacggcgt tatcgataat ctttttgacc gtcagttaga ttttattatc tccccacagc
      541 atgtatctgc acgagttcag gaactggaaa acctgactat cagtgaatta ccaccgctgc
      601 gattgggctt tctcgtttct cgccgttatg aagagcgtca agagcaagag ctgcttcagg
      661 agctgccctg gctacaaatg cgctttcaaa accgggctaa cttcgaagca atgattgatg
      721 cgaatatgcg accttgtggg atcaatccca ccattattta tcgtccctac agttttatgg
      781 ccaaaatcag cgccgtggag cgcggacatt ttctgacggt gatcccgcat tttgcctggc
      841 gactggtgaa tccggcaacg ctgaaatatt ttgatgcgcc gcacaggccg atgtatatgc
      901 aggaatatct ttattcaatc agaaatcatc gttataccgc cacgatgctt cagcatattg
      961 ctgaagatcg tgacgggaca aaccattaac ccagcatcga gccggttgca attaaattac
     1021 ggtgtaagtc gaagacgtgg ctaagatcgt ggtgaatatg tccgccgggc gcattttcca
     1081 gatagcgatg cagataatcc cgatacatag gatgtgcaca attatcaatg atagtgcggg
     1141 cgcgttgaag cggggaaaga ccgcgcagat cggcgatccc ttgttcggtg atgatcactt
     1201 tgacgctgtg ttcgctgtga tcaacatggc tgcacattgg cacgacggtt gagatcttgc
     1261 cttctttagc aatcgacgga gccataaaga tcgacagata cgcgttgcgt tcaaaatcac
     1321 cgctgccgcc gatgccgttc atcagatcga ccccggctac gtgcgttgaa tttgcatgcc
     1381 cgtaaatatc aaactccagg ccgacgttca gagcgatgac gcccagacga cggatgattt
     1441 ccgggttatt ggaaatctcc tgcggacgca acacaatgcg gctggcaaag taatccatat
     1501 tgtcgtaaat cttgcgcagg gaatcggccg agattgtcag gctggaggcg ctggccccgc
     1561 tgattttgtc ggtttccagt aaatgcacca ccgattcctg tagcacttcc gaatacatca
     1621 tgaacggagg aatttccggg ttttccccca gacgcgccat taccgcatta ttgatattgc
     1681 ccacgccact ttgcagcggc agaaattccg gcggaatacg cccatgcgcc atttcctgca
     1741 ataagaacgt gaccacgtta tcggcaatct gctggcacat gggattttgc ttatccagca
     1801 tattaccggc gtcgggcaag ttggtttcca cgacggcgac aatctttttc ggatcgattt
     1861 gcacatagcg ggtaccgacg cgatccattg catggaagat cgacacgcta ttgcgccgcg
     1921 gtggcgcgcc aggaatcaca atatctgcca gttctgcaac gcgcggatcg tgatagtgat
     1981 taagttcaat gatcactttc ttcgctcgca gcagccaggt cggcgcatta ccgatcccgc
     2041 tggttaacca gactcgacca tccggtgcca gtgccgatgc ttcaatgacg gcaacatcaa
     2101 tgtcgccgaa gaaaccgtaa ttgaccattt gcgccacttc gctcaaatgc aggtcaacga
     2161 aactcaccgc gccctgattg atctttttac gtaaaccgga cgatgtttga tatggcgcac
     2221 gccaggaaac agcatcggcg tcagaaagta catcgtcagc ggcggcgctg attgacgccc
     2281 ccgtcagcag gcgaatttga tacggctttt tggcctcatg ctgttcgtta gctctgcggg
     2341 caatcgcggt gggtagggct ttcggcgaac ccgccggggt aaagccgcta aatgccacca
     2401 tgtcgttatg ctggataatt tctgccgctt catcggcggt catccttgtc cactgagttt
     2461 ccatttttac tccttcgttc gcagggatta atgaccaacg aaattaggtt tacgtttttc
     2521 gaggaaagcg ttcattcctt cctggtaatc ttcgctgtca taaaccgcgc gtcgcatccc
     2581 ctgaatacgt tcaaattcat cggagttcat ggtgtgcgct tcgcccagta cacgcagctc
     2641 ttctttgata acagcaatgg ctaacggcgc tttctcagag atgtggtgcg ccatttgtaa
     2701 ggtgaaatct tccagttctt ccacttccac aacatggttg aggatgccga cagccagcgc
     2761 gcgctgggcg gtgattggcg aagcggtaaa aatcagctct ttgacaatgt ggaagcccgc
     2821 gtcgcgggtc aggttgtgaa tgccgaccag gttatacggg acgccgaggt ttacaggcgt
     2881 cattgagaag gttgaggtac tggcggcgat gatcagatcg gaactcatga tcatttcaaa
     2941 tgcgccaccc caaacactac cttccaccat cgaaatgatc ggtttcggga atttttggat
     3001 catgcgggtg atttgacgca atggatcatc ataggagagc ggatcgcgac cgccagacgg
     3061 cagttcgtga atatcgtgac ctgcggagaa gactttggat ccactcggcg cgcgcaaaat
     3121 gatacagcga atttccggcc ggttgagatc gcttaacgcc tgcataagat catcaataaa
     3181 gactttactt aaggcattaa gttttcggcc atagttaaac tcaatgaccg ccactttgtt
     3241 gatagtggca acgttcacat actgataaga cataaaaatt cctttaatca aaatattgcg
     3301 tctggataaa ttcactgagc tgccgcaggc cggtgcgcgg tgagagcgta ttgtttttga
     3361 ccgctaaaag cgtctggcgg taatagcgat cgaaatcttc attcgcgaac aggtgattca
     3421 gtacttcttc ttcggtctgc ttacgcagcc attccaccga ttgttgttgc cgcacttgtt
     3481 gtaaacgacc actggcagtt agcgcggttt tgaactcgat gatggcgtgc cagatctcat
     3541 cgattccacg tttttccagt gcgctacaag tcagaacccg tggctgccat tcgtcgtatt
     3601 tacgtcgcag aatatgcagg gcactctcgt acatatgccg ggcaatggcg acattggtat
     3661 ggttatcgcc atcgtctttg ttgataacga tcagatcagc cacttccatc agcccttttt
     3721 taatgccctg cagatcatcg ccgccaccgg caatttgcaa cgagataaaa cagtccacca
     3781 tgcgggcgac ttctgtttcc gactgcccga cgccaaccgt ttcgacaatc actacgtcat
     3841 aacccgccgc ttcgcataac agcattaatt cccgcgctcg ctgactggca ccgcccagat
     3901 gaccggagga tggtaccggg cgaataaacg ccgcttcggc acgcgccagg tcattcatgc
     3961 ggattttatc cccgagaatg ctaccgccag tgaccgggct gctgggatcg accgcaataa
     4021 ccgcgacctt taatccctct cgaatcaaca acatgccaaa ggcctcaaga aaggtacttt
     4081 tccccgcgct gggggtgccg gtaacgccca gtcgcagggt gttaccgcag tacggcataa
     4141 tggcatcaag cagctgcgta cttagtgcct gatgacgcgg gtgacggctt tccaccagcg
     4201 tcatggcctg ggcgagtgtg gcacgctcac cctgacgtaa gcggcgaata ctttctgcca
     4261 gcgtggcttc attaatcatg atgctggctt atcagattca gtacgtcgcg cacactgtcg
     4321 agcataggtg tacctggacc ataaatcgcc gccacgccgc gctcttgcag gaaggcgtaa
     4381 tcctgcggtg gaatgacgcc accggcgact acgcagatat cttcgcgtcc ccattttttc
     4441 agcgcctcga ccagttccgg gatcagcgtt ttatgaccgg cagccagtga ggatgcgccc
     4501 actacgtgaa cgtcattttc tactgccagg cgggcgatct cttcaggtgt agagaacatc
     4561 gggcttaaat ctacgtcgaa accgagatcg gaataggcgc tggcgatcac tttcgagccg
     4621 cgatcgtgcc catcctggcc cattttggcg atcagaatgc gcaggcgacg accattgtcg
     4681 gcaaggaact gctccgtttg cgcaacaatg gcatcgaact cggaggccga tttctcagat
     4741 tgatgatagc tttgcgcaat cacgccggta acacacaggc ttggcaccag ataacggtcg
     4801 aaagcggctt ccagcgcatc ggaaatttca cccagggtgg cgcgaacgcg agcggcatta
     4861 acagcggcag ccagcaggtt ttcgttatgc tgtgcggcgt gagtcagggc gttcaacgcg
     4921 gcggttacgg cggcatcatc acgggtggcg cgaatgcgtt ccagcgaagc aatttgctcg
     4981 ttacgcacca tcacgttgtc gatctcaagt acatcggttt cgtcttcgtg atccagtttg
     5041 tacttgttga caccaacgat gacacgtttg ccctggtcga taagcgactg ttcgcgcgct
     5101 gaggcctatt cgatcattcg ttttggcaga cctgcttcga tcgctttcgc cataccaccg
     5161 gcttcgtcga tctgttggat aatagctctg gcttgtttga cgatttgatc ggtcagcgac
     5221 tcaatgtaat aggatccggc cagtggatcg acggtgcggc agagttctga ttcttcctgg
     5281 atgatgatct gggtgttgcg ggcaatgcgt gctgagaaat cggtaggcaa accaagcgct
     5341 tcgtcaaagg cgttggtatg cagtgactga gtaccgccca gcgtcgcagc cagtgcttca
     5401 atggtggtgc ggataacgtt gttatacgga tcctgttcag tcaggctcca gcctgaggtc
     5461 tggcagtggg tacgcagcgc cagtgatttc gggtcctgtg cgccaaatcc actgaccgct
     5521 tcgctccata aataacgtgc cgcacgcaac atggcgacgt tcataaacag atccatgccg
     5581 atgccgaaga agaacgacag gcgaggagcg aagtcatcaa ttttcagtcc ggcagagatt
     5641 gctgctttga tgtactcaat cccatcagcg agcgtaaatg ctacctgctg cacgcagttg
     5701 gcacccgctt cacccatgtg gtaaccgctg atactgatgg tattaaatcg cggcatgttg
     5761 ccggaacacc aggcgatgat gtcggcgata atgcgcattg acggttttgg cgggtaaata
     5821 taggtgttgc ggcagaggta ctctttgagg atatcgttct gaatggtgcc ggtcagttta
     5881 tcaggtgtaa caccttgctc ttccgcggcg acgatataaa acgccagtac tggtagcact
     5941 gcgccattca tggtcatcga aaccgacatt ttatccagcg ggatctggtc gaacaggact
     6001 ttcatatctt ccacggtgtc gatagcgacg cccgctttgc cgacgtcgcc cgccacgcgc
     6061 gggttatcgg agtcgtagcc tcggtgggtg gcaaggtcaa acgcaacgga aagacctttt
     6121 tgcccggcgg ccaggttacg gcgataaaaa gcgttggact cttttgctgt tgaaaaacca
     6181 gcatactgac ggatggtcca cggttgggcg gtatacatag tggcacgcgg gccacgaacg
     6241 tagggcggca aaccaggaag ggtacctgtc acctccagat tatcgagatc ggcttcggta
     6301 tacagcggct tgatggtgat cccttccgcg gtttgctgaa ccagcgagtc gacagttttc
     6361 tcccgacggc tcaattcctt gttggcaagc tgttgccact cctgcacgtt agacattatt
     6421 tgctccgtaa aacgcaatca aaatgagggt atttgcgcct acggtgagct ttttacgtgg
     6481 gtttgtcgcc agcaaaaaaa atgcattcag acgtcgtttt ttgccgcctg agatttgtct
     6541 attttgtgat gtgattcaag gaatacaaaa agaagtgagg acaacgcctg atatgtgcta
     6601 tcaggcatta tttgatggat taatcctgac gaaggacttt gtgaccataa tcgagcaacg
     6661 catcagtgac tttacgcatc atgcggcttt caggagcaaa gcggtgccag tagagcatcc
     6721 ggcgttgaaa tagccctggc gttaagtcaa tcagttcacc gctggctagt tctttctcga
     6781 tttgcaggtg cgggatcata cagcaggtgg tgccctggcg agcaagttgc acgaacgctt
     6841 ctgaagaatt aacgatatgg cagggcacgc tgcctggagg cagatcgaag ttttgctgca
     6901 aaaaggcctg gtgcatatcg tcaagatggt caaaggcgac cacaggtgct ttcaataatg
     6961 ccgaacgcgt tacgccgtta gggaaatatt tttcggcaaa cggttttgag ctgacgaaca
     7021 gatagtcaag cgcaccgagc ttatcgacaa ggcaactcgg cagcgcctga tgttgaatac
     7081 tcaccgcgcc gaccacttcg ccgcggcgca gacgttcctg agtacgggtt tcatcttcta
     7141 cctgcaagtt gaggcggata ggcgaatcag ccaatacagg agccagtgcc ggaagcaacc
     7201 acgtcgccag actgtcggcg ttgaccgcca gtgaaagcag cagcggagtc gaaccggttt
     7261 gttcatcgcc cagccactct tcttccagca actccacctg gcgcagcagt gccagcagtt
     7321 tttgcccttg ttccgtcggg cgcggcggta cggtacgcac caacagcggc tgcccgaaca
     7381 tattttccag ttgcttaatg cgctgtgaga cggctgattg tgtaatgcac agcttttgtg
     7441 ccgcgcgctc aaatcctcgt tcacgtatca ccgcatccag tgcctgtaat gttctgtagt
     7501 ccgggcgttt cattgctgtt gtctgctcct ggtaaatgct ttttcctgca ctatgacaca
     7561 attttgtgtc aggttgcata taccgcagcc gtcggcgggt aacatttgta tcaatggtta
     7621 aacgcgcagc ttaaaagatc agggatttgc gctattgcat ttcgcttagc gacttcgcgc
     7681 cctggttatg ttgaatggcg tggcgttatt gcctctgttc gcaccgtgga gcggcatacc
     7741 cagaccgttg tatgctttat ttgcggggcg aaaggggatg cccgccattg cgcgatattt
     7801 tatggatgag ttaaccaccc ggcttgccaa cggggtctga atcgcttttt ttgtatataa
     7861 tgcgtgtgaa atttcatacc acaggcgaaa cgatcatgac gcaggatgaa ttgaaaaaag
     7921 cagtaggatg ggcggcactt cagtatgttc agcccggcac cattgttggt gtaggtacag
     7981 gttccaccgc cgcacacttt attgacgcgc tcggcacgat gaaaggccag attgaagggg
     8041 ccgtttccag ttcagatgct tccactgaaa aactgaaaag cctcggcatt cacgtttttg
     8101 atctcaacga agtcgacagc cttggcatct acgttgatgg cgcagatgaa atcaacggcc
     8161 acatgcaaat gatcaaaggc ggcggcgcgg cgctgacccg tgaaaaaatc attgcttcgg
     8221 ttgcggaaaa atttatctgt attgccgacg cctccaagca ggttgatatt ctgggtaaat
     8281 tcccgctgcc agtagaagtt atcccgatgg cacgtagtgc agtggcgcgc cagctggtga
     8341 aactgggcgg tcgtccggaa taccgtcagg gcgtggtgac cgataatggc aacgtgatcc
     8401 tcgacgtcca cggcatggaa atccttgacc cgatagcgat ggaaaacgcc ataaatgcga
     8461 ttcctggcgt ggtgactgtt ggcttgtttg ctaaccgtgg cgcggacgtt gcgctgattg
     8521 gcacacctga cggtgtcaaa accattgtga aatgatctga cgggggaacc tcccccgtta
     8581 aaaaaattct cttcattaaa tttggtgaca tgtgtcacgt ttttacctgg ctattgtcga
     8641 ttgctctaaa taaatcctct aaaccagcat attcaaccaa gaaatacctt tgcgtgatat
     8701 ttcctcaaca tcgcgacgca aacgttcata ttgccgcaat attatttttt gatatgttga
     8761 aaggcggatg caaatccgca cacaacattt caaagacagg attgggtaaa tggcaaaggt
     8821 atcgctggag aaagacaaga ttaagtttct gctggtagaa ggcgtgcacc aaaaggcgct
     8881 ggaaagcctt cgtgcagctg gttacaccaa catcgaattt cacaaaggcg cgctggatga
     8941 tgaacaatta aaagaatcca tccgcgatgc ccacttcatc ggcctgcgat cccgtaccca
     9001 tctgactgaa gacgtgatca acgccgcaga aaagctggtc gctattggct gtttctgtat
     9061 aggaacaaac caggttgatc tggatgcggc ggcaaagcgc gggatcccgg tatttaacgc
     9121 accgttctca aatacgcgct ctgttgcgga gctggtgatt ggcgaactgc tgctgctatt
     9181 gcgcggcgtg ccggaagcca atgctaaagc gcaccgtggc gtgtggaaca aactggcggc
     9241 gggttctttt gaagcgcgcg gcaaaaagct gggtatcatc ggctacggtc atattggtac
     9301 gcaattgggc attctggctg aatcgctggg aatgtatgtt tacttttatg atattgaaaa
     9361 taaactgccg ctgggcaacg ccactcaggt acagcatctt tctgacctgc tgaatatgag
     9421 cgatgtggtg agtctgcatg taccagagaa tccgtccacc aaaaatatga tgggcgcgaa
     9481 agaaatttca ctaatgaagc ccggctcgct gctgattaat gcttcgcgcg gtactgtggt
     9541 ggatattccg gcgctgtgtg atgcgctggc gagcaaacat ctggcggggg cggcaatcga
     9601 cgtattcccg acggaaccgg cgaccaatag cgatccattt acctctccac tgtgtgaatt
     9661 cgacaacgta cttctgacgc cacacattgg cggttcgact caggaagcgc aggagaatat
     9721 cggcctggaa gttgcgggta aattgatcaa gtattctgac aatggctcaa cgctctctgc
     9781 ggtgaacttc ccggaagtct cgctgccact gcatggtggt cgtcgtctga tgcacatcca
     9841 cgaaaaccgt ccgggcgtgc taactgcgct gaacaaaatc ttcgccgagc agggcgtcaa
     9901 catcgccgcg caatatctac aaacttccgc ccagatgggt tatgtagtta ttgatattga
     9961 agctgacgaa gacgttgccg aaaaagcgct gcaggcaatg aaagctattc cgggtaccat
    10021 tcgcgcccgt ctgctgtact aattcccctt ctctgaaaat taacgggcag gtcactgact
    10081 tgcccgtttt tttatccctt ctccacaccg ttgccgcgtt gcgcattcta ctttgcgagt
    10141 ctgctccaga aaataaatca aagtcagatc aatgcgttgt gtttatttaa tggggattta
    10201 cgatggcggg acagtatggg gctgtaacgg taaagccctc accgaagcga gggcttaaag
    10261 gagaagggtt atgatgcgac ttgtcatcat actgattgta ctgttactga taagtttcgg
    10321 agcttattaa cagtcagtct ctggggagga gtcatcctcc cttaccctta ctcactaaat
    10381 taggtcaaag aatcaacgat gtcaatcagg gcgatgcggg gtgcatcgcc ctgaaccgaa
    10441 ctttttgata gccacttcat cgcccacgtt tactgccgta atagatcctt tttcccaaaa
    10501 attatctctg ttttgcatgg ggtttttcga acacgctcga agaaaagatt taaaggtaga
    10561 tcaatgcgtt gtggttattt aaagagagct tacgatagct gggcagcatg gggctgtaac
    10621 ggtaaagccc tcaccgaagc gagggcttga aggagaaggg ttatgatgcg acttgccatc
    10681 atactgattg tactgttact cataagtttc ccagcttatt aacagtcagt cacaggggag
    10741 gagcaatcct cccttaccct tactcactaa attaggttaa agaatcaacg atgtcaatca
    10801 gggcgatgca ggtgtatcgc ccttaccact cccagacttt cgacggtgta accaccgcag
    10861 gaagagggat atcccactct tcaacgggga gtttttccac caactgacaa tcatgcgcat
    10921 aacccaccgg ttgcgtttta tagtgctgcc agttttgtaa ggtccgatca taaaaaccac
    10981 cgcccattcc caggcgctga ccgtactcat caaaggcgac cagcggtgtg atcagcacgt
    11041 ctaatcggga aaggggtagc acgtcacgca catccagttt tggctcatgg attttcaacc
    11101 tgttcatcac cagttcgctt tgcggatggt aattcaggaa cagcaaatta ccagcactaa
    11161 agggatgcaa aactggaaga tatacgcgct taccggcgcg ccagagttgt tctattagcg
    11221 gctgggtgtc gagttcacca tcaaaagaga ggaatacagc gaccgtatgc gccatcacca
    11281 ccgggggata agtcatcatc cgggtagcgg cttgttgacc catttcctgc tgttgttccg
    11341 gcgttaacgc acgacgacgt tgccgaatca ttttgcggat ttcttgtcgg gataatgtca
    11401 gtgggagttc tggtagttgc gtcatggctg gtgccagata agaagggaat ctccgagatg
    11461 ccgccgcagg ctgtaaccct tgaacccttg gttcaaggtg aatgtgtcgt cgcagtttta
    11521 aggcttctcg gacggaccga gcatgctcac caaccgcgga gcgccacatt cttgtggtat
    11581 gaaatatcgg ctcaggggac tggcccgctt gcgaacatct cagagaaatt ttgtcttcac
    11641 ggttactcta ccacagtaaa ccgaaaagtg tcattcaaag ttttggttag ttttttcggt
    11701 gatgcgacct tgttcaagta acgcttgttc tatggtctgc tgcagcatcc gaatacgctg
    11761 ttccatactt gccgcgtagt cacgagtctt cgctttttct tgcgctaact catagctgat
    11821 attcaatgcg gcaatgaaga ccaactgttc agtatttgtg actctagtgc gttctttcag
    11881 atcttgcaac cgttggttca gatcgtccgc tgcctgattc aacgcatccc tttggtcagg
    11941 cgggcagttc acacgcagtg aacggccaaa aatttggata tcgacgggtt gtgcagacat
    12001 gccaccttcc tgctgattga ctgcgctgcc ttcgtcttta gacccatggt ctgcgaaggg
    12061 gcgacactat agctaccctg atgagaagag acaagccctt ttctggtcca ccagggccca
    12121 aagtggtagc atatcatgaa tattcctccc tttgacgacg aatgcttatg tctatacaga
    12181 acgaaatgcc tggttacaac gaaatgaacc agtatctgaa ccaacaaggg acgggtctga
    12241 cccctgccga gatgcatggt ttaatcagtg ggatgatatg tggcggtaac gatgacagct
    12301 catggctgcc gctacttcac gacctgacga acgaaggcat ggctttcggt catgagctgg
    12361 cacaggcact gcgtaaaatg cactctgcca ccagcgatgc cctgcaggat gacggcttcc
    12421 tttttcagct ttatctgcct gatggcgatg atgtcagcgt tttcgatcgg gctgatgcat
    12481 tggcaggttg ggtcaatcac ttcctgcttg gtcttggcgt tacgcaaccg aagctggata
    12541 aagtgaccgg cgaaaccggt gaagctatcg acgatctgcg taacattgcg caactgggtt
    12601 acgacgaaga cgaagatcag gaagagcttg aaatgtcgct tgaagagatc atcgaatacg
    12661 ttcgtgttgc cgcgctgtta tgccacgaca cctttactca tccgcaaccg accgcgccag
    12721 aagtacaaaa accgactcta cactaaaaac aaaaaacgta aggagagtgt tatgagtgag
    12781 atatcccggc aagagtttca gcgtcgccgt caggccctgg tggagcaaat gcaacccggc
    12841 agcgccgcgc tgatttttgc tgcaccagaa gtaacacgta gcgccgacag cgaatacccc
    12901 tatcgtcaga acagtgactt ctggtacttc accggcttta acgaaccgga agcggtgctg
    12961 gtgctgatta aaagcgatga cactcataac cacagcgttc tgtttaaccg cgttcgcgac
    13021 ctgacggcgg agatctggtt tggccgtcgc ttaggccagg atgccgcgcc agagaaactg
    13081 ggcgttgacc gcgcactggc attcagcgaa atcaatcagc aactttatca actacttaac
    13141 ggcctggatg tggtttacca tgcccagggc gaatatgcat atgctgatga aatcatgaac
    13201 agtgcgctgg aaaaactgcg taaaggttcg cggcaaaatc tcaccgcacc ggcaacgatg
    13261 atcgactggc gtcctgttgt tcatgaaatg cgcctgttca aatcgccaga agagattgcc
    13321 gtactccgcc gcgcgggaga aatcaccgcc atggcacata cacgggcgat ggaaaaatgc
    13381 cgtccgggaa tgttcgagta ccatctggaa ggcgaaattc accacgaatt taaccgccac
    13441 ggtgcgcgct atccgtccta taacaccatt gtcggcagcg gtgaaaacgg ctgcattctg
    13501 cactacaccg aaaacgagag tgaactgcgc gacggtgacc tggtgttgat tgacgcgggt
    13561 tgtgaataca aaggttacgc gggcgatatt acccgcacct tcccggtcaa cggcaaattc
    13621 acccaggccc agcgtgaaat ctacgacatt gtgctggagt ctctcgaaac cagcctgcgc
    13681 ctgtatcgtc cgggaacttc cattctggaa gtcactggtg aagtggtgcg catcatggtt
    13741 agcggcctgg taaaactcgg cattctgaaa ggtgatgttg atgaactgat cgctcagaat
    13801 gcccatcgtc ctttctttat gcatggcctt agccactggt tagggctaga tgtccatgac
    13861 gttggcgttt atggtcagga tcgctcgcgc attctggaac cgggcatggt actgaccgta
    13921 gagccagggc tgtatattgc gccggatgca gaagtgccag aacaatatcg cggtatcggc
    13981 attcgtattg aagacgacat tgtgattacc gaaaccggta acgaaaacct caccgccagc
    14041 gtggtgaaaa agccggaaga aatcgaagcg ttgatggctg ctgcgagaaa gcaatgagcg
    14101 taatcatcgt cggtggcggc atggcgggcg cgacgctggc gctggctatt tcccggttaa
    14161 gtcacggggc gctgccggta catttgattg aagcgactgc gccagagtca catgctcatc
    14221 cgggctttga tggacgagcg atagcgctgg cggcgggtac ctgtcagcaa ctggcgcgca
    14281 tcggcgtctg gcaatctctg gcggattgcg caactgccat caccaccgtg catgtcagcg
    14341 atcgtggtca cgctggattt gtcaccctcg ccgcagaaga ttaccaactg gcggcgctgg
    14401 gacaggttgt cgaattgcac aatgtcgggc aacggctgtt tgcattgctg cgtaaagcac
    14461 ctggcgtaac gctgcattgc cctgatcgcg tggctaacgt tgcccgtact cagagtcacg
    14521 ttgaagtgac gctggagagt ggcgagacgc tgacgggccg cgtgctggta gcagctgatg
    14581 gcacccattc agcgttagcc accgcgtgcg gcgttgactg gcagcaggag ccttacgaac
    14641 aactggccgt gattgccaac gttgcgactt ccgttgcgca cgaaggccgc gcttttgaac
    14701 gcttcacgca acatggcccg ctggcgatgt tgccgatgtc tgacggacgc tgttcgctgg
    14761 tctggtgtca tccactggaa cggcgcgaag aggtgctgtc gtggagcgac gagaagtttt
    14821 gccgtgaact ccagtcggcc tttggctggc gacttggaaa aattacccac gccggtaaac
    14881 gcagtgctta tccgctggcg ttaacccgcg ccgccagagc tattacccat cgtaccgtgc
    14941 tggtgggcaa tgcggcgcaa actctgcacc cgattgccgg gcaagggttt aacctcggta
    15001 tgcgagatgt catgagcctt gcggaaaccc tgactcaggc gcatgagcgc ggagaagaca
    15061 tcggtgatta cggcatattg tgccgctatc agcagcgtcg acagagcgat cgcgaagcaa
    15121 ccatcggcgt cacggacagc ctggtacatc tttttgccaa ccgttgggca ccgctggttg
    15181 tcgggcgcaa catcggactg atgacgatgg aattattcac cccggcacgc gatgtgctgg
    15241 cgcagcgcac cctcggttgg gtggcgcgtt gaaggcggtt ttaaggaata aacaatgcaa
    15301 tgtgttgatg tagccattgt tggtggcggc atggtggggc tggcggttgc ctgcggctta
    15361 caggggagcg gcttacgcgt tgccgtactg gagcagcgcg taccggaacc tctggcggcg
    15421 gatgcaccac cacaactgcg cgtttcggct atcaatgccg ccagcgaaaa attactcacc
    15481 cgtcttggcg tctggcagga cattctctct cgtagggcca gttgttatca cggtatggaa
    15541 gtgtgggaca aagacagttt tggtcacatt tcgtttgacg atcaaagcat gggctatagc
    15601 catcttgggc atatcgttga aaactcagtg attcactacg cgctgtggaa caaagcgcag
    15661 cagtcgtcag atatcactct gttggccccc gcagaattac agcaggtcgc ctggggagaa
    15721 aatgaaactt tcctgacgct gaaagatggc agcatgttaa cggcgcgtct ggtgattggc
    15781 gcggacggtg ctaattcctg gttgcgcaac aaagcagata tttcgctgac tttctgggat
    15841 tatcagcatc acgcgctggt agcgaccatt cgcacggaag aaccgcatga tgcggtggcg
    15901 cggcaggttt tccatggcga aggcattctg gcctttttac cgcttagcga tccgcatctt
    15961 tgctcaattg tctggtcact gtcgccagag gaagcgcagc ggatgcagca ggcaagtgaa
    16021 gatgaattta atcgcgcgtt aaatatcgct tttgataatc gcctgggctt atgcaaggtt
    16081 gagagcgcgc gtcaggtgtt cccactgacg gggcgttatg cgcgccagtt tgccgcgcac
    16141 cgtctggtgc tagtgggcga cgccgcgcat accattcacc cgctggcggg gcagggagta
    16201 aatctcggct ttatggatgc tgcagagctg attgctgaac tgaaacggtt gcatcgtcag
    16261 gggaaagaca tcgggcagta catttacctg cgccggtatg agcgtagccg caagcacagt
    16321 gcggcgctga tgctggctgg tatgcaggga ttccgcgatc tgttttccgg taccaatccg
    16381 gcgaaaaaac tgctgcgtga tattggtttg aaactggccg acacgcttcc tggcgttaaa
    16441 ccacaactta tccgccaggc aatgggatta aacgatttgc ctgaatggct gcgttaaaaa
    16501 tttctcttct gctgtttatt tgatacccat cacactttca tctcccggtt ttttcgccgg
    16561 gagattttcc tcatttgaaa taaactaatt tcacctccgt tttcgcatta tattttctaa
    16621 tgtcattatt ttttgattta gtgttttttg acattttttt agctcttaat attgccttat
    16681 tcaaattagc tttctaatgg catcatcttt atatagaaac tggtgtgttt tttggttttt
    16741 tattctgtcg cgattttggc gttttttaac cataagctaa tgtgatgatc aattttacct
    16801 tatggttaac agtctgtttc ggtggtaagt tcaggcaaaa gagaacgatt gcgttgggga
    16861 ccgggagtgg ctccgatgct gggtttcgtg gtgataattt caccatgaaa agttgtcagc
    16921 cccgcttatt caatgaggac aagatggcac aacagactcc tttgtacgaa caacacacgc
    16981 tttgcggcgc tcgcatggtg gatttccacg gctggatgat gccgctgcat tacggttcgc
    17041 aaatcgacga acatcatgcg gtacgtaccg atgccggaat gtttgatgtg tcacatatga
    17101 ccatcgtcga tctccgcggc agccgcaccc gggagtttct gcgttatctg ctggcgaacg
    17161 atgtggcgaa gctcaccaaa agcggcaaag ccctttactc ggggatgttg aatgcctctg
    17221 gcggtgtgat agatgacctc atcgtctact actttactga agatttcttc cgcctcgttg
    17281 ttaactccgc cacccgcgaa aaagacctct cctggattac ccaacacgct gaacctttcg
    17341 gcatcgaaat taccgttcgt gatgaccttt ccatgattgc cgtgcaaggg ccgaatgcgc
    17401 aggcaaaagc tgccacactg tttaatgacg cccagcgtca ggcggtggaa gggatgaaac
    17461 cgttctttgg cgtgcaggcg ggcgatctgt ttattgccac cactggttat accggtgaag
    17521 cgggctatga aattgcgctg cccaatgaaa aagcggccga tttctggcgt gcgctggtgg
    17581 aagcgggtgt taagccatgt ggcttgggcg cgcgtgacac gctgcgtctg gaagcgggca
    17641 tgaatcttta tggtcaggag atggacgaaa ctatttctcc tttagccgcc aacatgggct
    17701 ggactatcgc ctgggaaccg gcagatcgtg actttatcgg tcgtgaagcc ctggaagtgc
    17761 agcgtgagca tggtacagaa aaactggttg gtctggtgat gaccgaaaaa ggcgtgctgc
    17821 gtaatgaact gccggtacgc tttaccgatg cgcagggcaa ccagcatgaa ggcattatca
    17881 ccagcggtac tttctccccg acgctgggtt acagcattgc gctggcgcgc gtgccggaag
    17941 gtattggcga aacggcgatt gtgcaaattc gcaaccgtga aatgccggtt aaagtgacaa
    18001 aacctgtttt tgtgcgtaac ggcaaagccg tcgcgtgatt tacttttttg gagattgatt
    18061 gatgagcaac gtaccagcag aactgaaata cagcaaagaa cacgaatggc tgcgtaaaga
    18121 agccgacggc acttacaccg ttggtattac cgaacatgct caggagctgt taggcgatat
    18181 ggtgtttgtt gacctgccgg aagtgggcgc aacggttagc gcgggcgatg actgcgcggt
    18241 tgccgaatca gtaaaagcgg cgtcagacat ttatgcgcca gtaagcggtg aaatcgtggc
    18301 ggtaaacgac gcactgagcg attccccgga actggtgaac agcgaaccgt atgcaggtgg
    18361 ctggatcttt aaaatcaaag ccagcgatga aagcgaactg gaatcactgc tggatgcgac
    18421 cgcatacgaa gcattgttag aagacgagta acggctttat tcctcttctg cgggagagga
    18481 tcagggtgag gaaaatttat gcctcaccct cactctcttc gtaaggagag aggttcacaa
    18541 ttcactgcac gtttcaggaa ccatcgctca tgacacagac gttaagccag cttgaaaaca
    18601 gcggcgcttt tattgaacgc catatcggac cggacgccgc gcaacagcaa gaaatgctga
    18661 atgccgttgg cgcacaatcg ttaaacgcgc tgaccggcca gattgtaccg aaagatattc
    18721 agcttgcgac cccgccgcag gttggcgcac cggcgaccga atacgccgca ctggcagaac
    18781 tcaaggctat tgccagtcgc aataaacgct tcacgtctta catcggcatg ggttacaccg
    18841 ccgtgcagct accgccggtt atcctgcgta acatgctgga aaatccgggc tggtataccg
    18901 cgtacactcc gtatcaacct gaagtctccc agggccgcct tgaagcactg ctcaacttcc
    18961 agcaggtaac gctggatttg actggactgg atatggcctc tgcttctctt ctggacgagg
    19021 ccaccgctgc cgccgaagca atggcgatgg cgaaacgcgt cagcaaactg aaaaatgcca
    19081 accgcttctt cgtggcttcc gatgtgcatc cgcaaacgct ggatgtggtc cgtactcgtg
    19141 ccgaaacctt tggttttgaa gtgattgtcg atgacgcgca aaaagtgctc gaccatcagg
    19201 acgtcttcgg cgtgctgtta cagcaggtag gcactaccgg tgaaattcac gactacactg
    19261 cgcttattag cgaactgaaa tcacgcaaaa ttgtggtcag cgttgccgcc gatattatgg
    19321 cgctggtgct gttaactgcg ccgggtaaac agggcgcgga tattgttttt ggttcggcgc
    19381 aacgcttcgg cgtgccgatg ggctacggtg gcccacacgc ggcattcttt gcggcgaaag
    19441 atgaatacaa acgctcaatg ccgggccgta ttatcggtgt atcgaaagat gcagctggca
    19501 ataccgcgct gcgcatggcg atgcagactc gcgagcaaca tatccgccgt gagaaagcga
    19561 actccaacat ttgtacttcc caggtactgc tggcaaacat cgccagcctg tatgccgttt
    19621 atcacggccc ggttggcctg aaacgtatcg ctaaccgcat tcaccgtttg accgatatcc
    19681 tggcggcagg cctgcaacaa aaaggtctga agctgcgcca tgcgcactat ttcgacactc
    19741 tgtgtgtgga agtggccgac aaggcgggcg tactggcgcg tgccgaagcg gctgaaatca
    19801 acctgcgtag cgatatcctg aacgcggttg ggatcaccct tgatgaaacc accacgcgtg
    19861 aaaacgtaat gcagcttttc agcgtgctgc tgggcgataa ccacgggctg gagatcgaca
    19921 cgctggacaa agacgtggct cacgacagcc gctctattca gcctgcgatg ctgcgcgacg
    19981 acgaaatcct cactcatccg gtgtttaatc gctaccacag cgaaaccgaa atgatgcgct
    20041 atatgcactc gctggagcgt aaagatctgg cgctgaatca ggcgatgatc ccgctgggtt
    20101 cctgcaccat gaaactgaac gccgccgccg agatgatccc aatcacctgg ccggaatttg
    20161 ccgaactgca cccgttttgc ccgccggaac aggctgaagg ttatcagcag atgattgcgc
    20221 agctggctga ctggctggtg aaactgaccg gttacgacgc cgtttgtatg cagccgaact
    20281 ccggcgcaca gggcgaatac gcgggcctgc tggcgattcg tcattatcat gaaagccgca
    20341 acgaagggca tcgcgatatc tgcctgatcc cggcttctgc gcacggaact aaccccgctt
    20401 ctgcacatat ggcaggaatg caggtggtgg ttgtggcgtg tgataaaaac ggcaacatcg
    20461 atctgactga tctgcgcgcg aaagcggaac aggcgggcga taacctctcc tgtatcatgg
    20521 tgacttatcc ctctacccac ggcgtgtatg aagaaacgat ccgtgaagtg tgtgaagtcg
    20581 tgcatcagtt cggcggtcag gtttaccttg atggcgcgaa catgaacgcc caggttggca
    20641 tcacctcgcc gggctttatt ggcgcggacg tttcgcacct caacctgcat aaaactttct
    20701 gcattccgca cggcggtggt ggtccgggta tgggaccgat cggtgtgaaa gcgcatctgg
    20761 caccgtttgt accgggtcat agcgtggtgc aaatcgaagg catgttaacc cgtcagggcg
    20821 cagtttctgc ggcaccgttc ggtagcgcct ctatcctgcc aatcagctgg atgtacatcc
    20881 gcatgatggg cgcagaaggg ctgaaaaaag caagccaggt ggcaatcctc aacgccaact
    20941 atattgccag ccgcctgcag gatgccttcc cggtgctgta taccggtcgc gacggtcgcg
    21001 tggcgcacga atgtattctc gatattcgcc cgctgaaaga agaaaccagc atcagcgagc
    21061 tggatattgc caagcgcctg atcgactacg gtttccacgc gccgacgatg tcgttcccgg
    21121 tggcgggtac gctgatggtt gaaccgactg aatctgaaag caaagtggaa ctggatcgct
    21181 ttatcgacgc gatgctggct atccgcgcag aaattgacca ggtgaaagcc ggtgtctggc
    21241 cgctggaaga taacccgctg gtgaacgcgc cgcacattca gagcgaactg gtcgccgagt
    21301 gggcgcatcc gtacagccat gaagttgcgg tattcccggc aggcgtggca gacaaatact
    21361 ggccgacggt gaaacgtctg gatgatgttt acggcgaccg taacctgttc tgctcctgcg
    21421 taccgattag cgaataccag taattcactg attcgactat tttctaaagg cgcttcggcg
    21481 cctttttagt cagatgacaa agtacaaaag tgctcagaca gtcccctcgc ccctttgggg
    21541 agagggttag ggtgagggga acaggccggc actggcgcga atatttaccc tcaccccggc
    21601 cctctccctg aaagggcgag gggaaaagcg tgccaacatt gaagattgag ccagtttgtt
    21661 agcaatctca aagatacgtc aacgaattaa tttttctcgg aaaaacaaat ggctatagca
    21721 cttgtgaccg gtggcagtcg cggcatcggg cgggcaactg cattactgtt ggcgaaagaa
    21781 gagtatacgg tggcggttaa ttatcaacaa aacctccatg cggcgcagga agtggtgaac
    21841 ttaatcacgc aagccggtgg caaggcattc gtgctccagg cggatatcag cgacgaaaat
    21901 caggtcatcg caatgtttac agcaatcgat cagcacgatg aaccgctagc agcgctggtc
    21961 aataacgccg ggatcttgtt tacccagtgc accgttgaaa accttaccgc agagcgaatc
    22021 aaccgagtac tttccaccaa cgtgacggga tattttctct gctgccgcga ggcggtaaaa
    22081 cgcatggcgc ttaaaaatgg tggcagtggc ggcgctatcg tcaatgtctc ttcggtggcc
    22141 tcacggttgg gttcgccagg ggaataggtt gattacgcgg catcgaaagg ggcgattgat
    22201 acgttaacca ccggactatc gctggaagtc gccgcgcagg ggatccgcgt taactgcgtg
    22261 cggccagggt ttatttatac cgaaatgcac gccagcggcg gcgagcttgg acgcgtcgat
    22321 cgcgttaagt cgaacatccc catgcagcgt ggtggacagg cagaagaggt cgcgcaggcc
    22381 attgtctggc tactaagtga taaagcctct tacgtcacgg gaagttttat cgatttggcg
    22441 ggcgggaaat aaaacaggga agttgtctga ccggatgcaa caagtattgc atccggtact
    22501 tcatcgactt aaagcttctc gccgttgctg gcaatcacct ctttgtacca gttaaagctc
    22561 ttcttacgtg aacgcgacat atcgccagta ccgtcgtcat gtttattcac atagataaag
    22621 ccgtagcgtt tgctgtactg cccggtagtg aatgacacgc agtcgatgca gccccacggt
    22681 gtgtagccca tcagatccac accatcgtaa gtcactgctt ttttcatctc ttcaatatgg
    22741 gcgcgcaggt agtcaatgcg gtagtcgtcg ttgatgctgc catcttcttc cactttgtcg
    22801 taagcgccaa aaccgttttc gacaataaac agcggcctct gataacgctc atacagttcg
    22861 caaagggcat agcgcagacc tactggatca atctgccagc cccagtcaga cgctttaaca
    22921 tacgggttcg gtacgctgcc ttcaaaacca gagatcgcat cgccggtgcc gccttcggcc
    22981 ttcactgcgt tgatcatgta atagctgaaa ccaagataat cgcaggtgcc ttcacgcagt
    23041 acatccagat cgccatcttc cattttgatg ttaaatccgc gacgctccca ctcgttcaac
    23101 acataggacg ggtaatagcc gcgtagctgc acatcggtaa agacgtagcg ttcgcgcatc
    23161 gactcctgag cgaacatcac atcgtccggg ttacaggagt aaggatagag cggcaccatc
    23221 gccagcatac agccgacttt catctccggg ttaatgcgac gcgcggcttt cactgctagg
    23281 gcgctggcga caaactggtg atgcagcacc tggtacatcg tctcttccgg gttgtcatgc
    23341 tcggtataca ccacgccgga gcagcagtaa ccaaacagcg gcgcacgcca gttacgctgg
    23401 ttgtttattt cgttgaaggt catccagtat ttgactttat gcttgtagcg ttcgaatacc
    23461 acttccgcga aacggacaaa gaaatcaacg actttacggt tggtccagct accgtattgc
    23521 tgcaccagat gcagcggtat ttcaaagtgg gagagggtta tcaccggttc gatgttgtat
    23581 ttcagcagtt catcgaacag agagtcgtaa aacttcagcc cttcttcgtt tggctgagct
    23641 tcatcacctt ttggaaaaat acgcgtccag gcgatggaag tccgaaaaca tttgaagccc
    23701 atttcggcaa atagcttgat gtcttccttg tagtgaccat aaaaatcaac ggcttcatgg
    23761 tttggatagt attttcctgg caagacttct ttggtgattt cgcgcggcac gccgtgtgcg
    23821 ccaccggtca gaacgtcaca aatgctcggt cctttgccgc ctttgttcca gccgccttcg
    23881 acctgatgag cggcaacggc gccaccccat aagaaatctt tcggtaaggt gagttttttc
    23941 actatcatag gctccagatg agtcaattct tacaggaaat agtaccatgc agccaaacga
    24001 catcactttt tctcaacgtt tccaggatga cattctggct gggcgtaaaa ccatcaccat
    24061 ccgcgacgag tctgaatcgc acttcaaaac gggtgatgtg cttcgtgtcg gacgttttga
    24121 agatgacgat tatttttgca cgattgaagt caccgcaacc tcaaccgtaa cgctggatac
    24181 gctgacggaa aaacatgcag agcaggaaaa tatgaccctg actgaactga taaaggtcat
    24241 tgccgacatc tatcccggtc agacacagtt ttatgtgatt gaatttaaat gtctttaaat
    24301 tgaactcacg cctgttagtt gaaatttctc atttaatttc atgattttta ggagattagt
    24361 ctcaaatcag aatttatttt agctaacagg tgttcactgg aactattctc agttacgctg
    24421 gagaggtata catgtgcgtg tacgtttctc cggagtaagt tatggttcag aagcccctca
    24481 ttaagcaggg atattcgctg gcagaggaaa ttgccaacag cgtcagtcac ggcattgggt
    24541 tggtgtttgg tatcgttggg ctggtgttgc tactggttca ggcggtggat ctcaatgcca
    24601 gcgccacagc gataaccagc tacagcctct atggcggcag tatgatcctg ctgttcctcg
    24661 cttcgacgct ctatcacgcc attcctcatc aacgggcaaa aatgtggctg aagaaatttg
    24721 accattgcgc tatttacctg ttgattgccg gaacctacac gccgtttttg ctggtggggc
    24781 tggattctcc gttagcgcgc gggttgatga ttgttatctg gagcctggca ttgctgggga
    24841 ttctgtttaa actgaccatc gcgcaccgat tcaaaatttt atctctggtg acctatctgg
    24901 cgatgggctg gctgtcgctg gtggtaattt atgaaatggc agttaagctc gcggcgggca
    24961 gcgttacctt actggcggta ggcggcgtgg tttattcgct cggagtgatt ttctatgtct
    25021 gcaaacgcat tccctacaat catgccatct ggcacggctt cgtgctcggc ggcagtatgt
    25081 gccactttct ggcgatctat ttgtatattg ggcaggcgta atgggtatgc ctttgtaggc
    25141 ctgataagac gcgccagcgt cgcatcaggc atcggagcgc aaccgccgga tgcggcgtga
    25201 acgccttatc cgatctacgg gcctcgtccc tgttgtgata aaggcatcaa atcccagaca
    25261 tgataagacg cgtcagcgtc gcatcaggcg ataaatgcct gatgcgatac agagatttac
    25321 tcttcgagtg aatacggcag cggctcgata tgcagtgtat tcgcatcgtc gcgtacgcgg
    25381 aagatgctgt ccggttccat atcgttattc atgacgacct gtaccacgac ctgaccatct
    25441 tccagtttta ccgcagccag caccgtaccg gtacgacgcc agttctcgcc cattttcagc
    25501 tctaagtctt caccagcttc cggcagtcgg ctggcgctac ctgccagcaa ccagagcgca
    25561 cgtttattgg caccacggaa ttttgctcgc gccaccatct cttgtccggt ataacagcct
    25621 ttcttaaaac tgataccgcc cagcgcctgg agattggtcg cctgtgggat aaactgcccg
    25681 ctgttcgcgg catcaatcac cgggaaaccc gcttcaatgt ttaatgccag ccactgttgg
    25741 ctattgttca gttccgcttc accgcgcagt ttatcggtca gcatattggc agtagcttca
    25801 tcggttacga tcaggaaacg ttctgccggg tgttcaaacc atagcaaagt ggtcgcgcct
    25861 tctttaacta cctgtttttc tctcgaaggt agttcactaa agagattggc gagcgcggcg
    25921 cgcgcctgaa aaccggcaac accaagcagc acacgctcgt cgtctgccgc gatggtcact
    25981 ttagagaaca ccgcatattt tttcagttca gtcagctgcg gttcacgcac gctgcgccgt
    26041 tcaatccacg caaagccatc gccgtcgcgg aacagacgta aattgctcca cattttacct
    26101 ttggcgtcgc aatgggcggc gagcaggtgc tgattttctg tcatctggct gacatctgct
    26161 gtcacctgac cctgcatata tttttcgctg tccgcgccag taatggtggc aagcgcccag
    26221 tcatcaagcg tcatcagcgt cagcggtaaa cgggcagaag ccgtaggctg acggggagga
    26281 aaaggtgtaa aagccataat agagtcctga gttgcttaac ggcgtattaa taactaatgg
    26341 taaaagagct atgaggcaat gcaagtgctt tcactacgcg atctgtgcct tctgcgaggc
    26401 gacttccaaa aaaatgaagc tcttgaattg ttgtgaatta atttcgcgat cgcgatggtg
    26461 tttactgata ttcccgtaaa agaagtcgaa aaacacgtta caatagccgg gtactggatt
    26521 ttcgtgagac aggaagaaga tggacattaa caacaaagcc cgcattcatt gggcatgccg
    26581 ccgtggtatg cgcgaactcg atatttcaat catgccgttt ttcgaacatg agtacgacag
    26641 cttaagcgat gacgaaaaac gcatctttat tcgtctgctg gaatgtgacg atccggacct
    26701 gtttaactgg ctgatgaatc acggtaaacc ggccgatgca gaactggaaa tgatggtccg
    26761 actcatccag acacggaacc gggaacgtgg tcctgtggca atctgatttg cgcgtctcct
    26821 ggcgcgcaca gtggctttcc ttgctgattc atgggctggt tgccgctgtt attttactca
    26881 tgccctggcc gctcagttac accccgttat ggatggtgtt actttcgctg gtggtatttg
    26941 attgcgttcg cagccagcgg cgtattaatg ctcgccaggg ggaaattcga ttgttgatgg
    27001 acggacgttt gcgttggcaa gggcaggagt ggagcatcgt caaagcaccg tggatgatta
    27061 agagcggcat gatgctgcgt ttacgttctg atggcggtaa acggcaacat ttatggctgg
    27121 cagccgacag catggacgaa gctgaatggc gggatttacg gcggattttg ttgcaacaag
    27181 agacgcaaag ataaatatga cggcaaagca tatgcgctaa gccgtcagtg agatcaggcg
    27241 taatgctctg ccatttcgtt gaggatttgc tcgcaccagc tctgaatacg ctcgtcgcta
    27301 aggtcatact ggttagtttc atccagcgcc agacccacga acagttgccc gtcagcaatc
    27361 accggtttcg ggctggtaaa ttcatatcct tccgttggcc agtagccgac gaacttcacg
    27421 cctttggtcg agagtttgtc atgcagcata ccgagcgcat cgaggaacca ctcgccgtat
    27481 cccagttgat cgccaagccc atacagcgca acaattttac cttcaaggtt caggtcgtcg
    27541 agctgatccc agacggcttc ccagtcttcc tggatttcgc caaaatccca ggtcgggata
    27601 cccagaatga gcacatcgta ctgctccatt aatttcgggg agtcgtcctt gaggttatgt
    27661 aaggtcacca gttctgggcc gataatatcg cggatttttt ctgccgccat ttcggtgtaa
    27721 caggtgctgg aaccgtaaaa aagacccata ttcataacgt aagcttctcg attctgctgt
    27781 ggcttttgcg gctagtgtat cagaatcgct ttagtcacgg cacaataagg cataatggat
    27841 caaatgagtg accataaggg gcgcaagtga aacaggatct ggcacgcatc gagcagtttc
    27901 ttgatgctct gtggctggaa aaaaatctgg ctgaaaatac gttgaacgct taccgtcgcg
    27961 atctgtcaat gatggtggag tggttgcatc accgcgggtt gacgctggcg acggcgcaaa
    28021 gtgacgattt gcaggcatta ctggcagaac ggctagaggg cgggtataaa gccaccagct
    28081 cagcgcgttt gctgagtgca gtgcgccgat tgttccagta tctttatcgc gaaaagtttc
    28141 gtgaagacga tcccagtgcg catctcgctt caccgaaatt gccacagcgt ttgccaaaag
    28201 atttaagcga agcgcaggtc gaacgtttat tacaggcacc attaattgat cagccactgg
    28261 agctacgcga taaagccatg cttgaagtgt tgtatgctac cgggctgcgt gtctctgaac
    28321 tggtcgggct gacaatgagt gatatcagcc tacgtcaggg cgtagtgcgg gtcattggta
    28381 aaggcaacaa agagcgcctg gtgccgttag gtgaagaggc cgtttactgg ctggaaacct
    28441 atctggaaca tgggcgtccg tggctgttga atggtgtgtc aattgacgtg ttgtttccca
    28501 gccagcgtgc gcagcagatg acgcgacaga ccttctggca ccgcattaaa cattatgccg
    28561 tgctggcggg tatcgacagc gaaaagctgt caccgcatgt gttgcgtcac gcttttgcca
    28621 ctcatttatt aaatcatggt gcggatttac gcgtggtgca gatgctactg ggccacagcg
    28681 atctctccac cacgcaaatt tatacgcatg tcgctaccga gcgtctgcgg caacttcatc
    28741 aacagcatca cccgcgggcg tgatgtctga aaagaacggg aagatttatg aagaaaggtt
    28801 ttatgttgtt tactttgtta gcggcgtttt caggctttgc tcaggctgat gacgcggcaa
    28861 ttcaacaaac gttagccaaa atgggcatta aaagcagcga tattcagcca gcacccgtgg
    28921 ctggcatgaa gactgtgctg actaacagcg gtgtgttgta catcaccgat gacggtaaac
    28981 atatcattca ggggccaatg tatgacgtta gtggcgcggc tccggtcaat gtcaccaata
    29041 aaatgctgct aaagcagttg aatgcgcttg aaaaagagat gatcgtttat aaagcgccgc
    29101 aggaaaaaca cgtcatcacc gtgtttactg atattacctg tgggtactgc cacaaactgc
    29161 atgagcaaat ggcagactac aacgcgctgg ggatcaccgt gcgttatctt gctttcccgc
    29221 gccaggggct ggagagccag gctgagcaac aaatgaaagc catctggtgt gcgaaagata
    29281 aaaacaaagc gtttgatgat gtgatggctg gtaaagctgc cactccggca agttgcgata
    29341 tcgatattgc cgatcattac gcacttggcg tccagcttgg cgttagcggc actccggcaa
    29401 ttgtgctgag caatggcaca cttgttccgg gttaccagcc gccgaaagag atgaaagaat
    29461 tcctcgacga acaccaaaaa atgaccagcg gtaattaatt cgcgtgaaac aacagataca
    29521 acttcgtcgc cgtgaagtcg atgaaacggc agacttgccc gctgaattgc ctcccttgct
    29581 gcgccgttta tacgccagcc ggggagtacg cagtgcgcaa gaactggaac gcagtgttaa
    29641 aggtatgttg ccctggcagc aactaagcgg tgtcgaaaag gccgttgaga tcctttacaa
    29701 cgcttttcgc gaaggaacgc ggattattgt ggtcggtgat ttcgacgccg acggcgcgac
    29761 cagcacggct ctaagcgtgc tggcgatgcg ctcgcttggt tgcagcaata tcgactacct
    29821 ggtaccaaac cgtttcgaag acggttacgg cttaagcccg gaagtggtcg atcaggccca
    29881 tgcccgtggc gcgcagttaa ttgtcacggt ggataacggt atttcctccc atgcgggggt
    29941 tgaacacgct cgctcgttgg gcattccggt tattgttacc gatcaccatt tgccaggcga
    30001 aacattaccc gcggcggaag cgatcattaa ccctaacttg cgcgactgta atttcccgtc
    30061 gaaatcactg gcaggcgtgg gtgtggcgtt ttatctgatg ctggcgctgc gcaccttttt
    30121 gcgcgatcag ggctggtttg atgagcgcgg catcgcaatt cctaacctgg cagaactgct
    30181 ggatctggtc gcgctgggga cagtggcgga cgtcgtgccg ctggacgcta ataatcgcat
    30241 tctgacctgg caggggatga gtcgcatccg tgccggaaag tgccgtccag ggattaaagc
    30301 gctgctggaa gtggcaaacc gtgatgcaca aaaactcgcc gccagcgatt taggttttgc
    30361 gctggggcca cgtctcaatg ctgccgggcg actggacgat atgtccgtcg gtgtggcgct
    30421 gttgctgtgc gacaacatcg gcgaagcgcg cgtgctggca aatgaactcg atgcgctaaa
    30481 tcagacgcga aaagagatcg aacaaggaat gcagattgaa gccttgaccc tgtgcgagaa
    30541 actggagcga agtcgcgaca cgctacccgg cgggctggca atgtatcacc ccgaatggca
    30601 tcagggcgtt gtcggtattc tggcttcgcg catcaaagag cgttttcacc gtccggttat
    30661 cgcctttgcg ccagcaggtg atggtacgct gaaaggttcc ggtcgctcca ttcaggggct
    30721 gcatatgcgt gatgcgctgg agcgattaga cacactctac cccggtatga tgctgaagtt
    30781 tggcggtcat gcgatggcgg cgggtttgtc gctggaagag gataaattcg aactctttca
    30841 acaacggttt ggcgagctgg ttaccgagtg gctggaccct tcgctattgc aaggcgaagt
    30901 ggtgtcagac ggcccgttaa gcccggccga aatgaccatg gaagtggcgc agctgctgcg
    30961 cgatgctggc ccgtgggggc agatgttccc ggagccgctg tttgatggtc atttccgtct
    31021 gctgcaacag cggctggtgg gcgaacgtca tttgaaagtc atggtcgaac cggtcggcgg
    31081 cggtccgctg ctggatggta ttgcttttaa tgtcgatacc gccctctggc cggataacgg
    31141 cgtgcgcgaa gtgcaactgg cttacaagct cgatatcaac gagtttcgcg gcaaccgcag
    31201 cctgcaaatt atcatcgaca atatctggcc aatttagcgt catcttctct ataaaaaaga
    31261 gcgtggattg ggtacaatcc cgctcttatc accgcatttt gactagctca ataaaagaaa
    31321 tcagaccatg tttgaaatta atccggtaaa taatcgcatt caggacctca cggaacgctc
    31381 cgacgttctt agggggtatc tttgactacg acgccaagaa agagcgtctg gaagaagtaa
    31441 acgccgagct ggaacagccg gatgtctgga acgaacccga acgcgcacag gcgctgggta
    31501 aagagcgttc ctccctcgaa gccgttgtcg acaccctcga ccaaatgaaa caggggctgg
    31561 aagatgtttc tggtctgctg gaactggctg tagaagctga cgacgaagaa acctttaacg
    31621 aagccgttgc tgaactcgac gccctggaag aaaaactggc gcagcttgag ttccgccgta
    31681 tgttctctgg cgaatatgac agcgccgact gctacctcga tattcaggcg gggtctggcg
    31741 gtacggaagc acaggactgg gcgagcatgc ttgagcgtat gtatttgcgc tgggcagaat
    31801 cgcgtggttt caaaactgaa atcatcgaag agtcggaagg tgaagtggcg ggtattaaat
    31861 ccgtgacgat caaaatctcc ggcgattacg cttacggctg gctgcgtaca gaaactggcg
    31921 ttcaccgcct ggtgcgtaag agcccgtttg actccggcgg tcgtcgccac acgtcgttca
    31981 gctccgcgtt tgtttatccg gaagttgatg atgatattga tatcgaaatc aacccggcgg
    32041 atctgcgcat tgacgtttat cgcgcgtccg gcgcgggcgg tcagcacgtt aaccgtaccg
    32101 aatctgcggt gcgtattacc cacatcccga ccgggatcgt gacccagtgc cagaacgacc
    32161 gttcccagca caagaataaa gaccaggcca tgaagcagat gaaagcgaag ctttatgaac
    32221 tggagatgca gaagaaaaat gctgagaaac aggcgatgga agataacaaa tccgacatcg
    32281 gctggggcag ccagattcgt tcttatgtcc ttgatgactc ccgcattaaa gatctgcgca
    32341 ccggggttga aacccgcaat acgcaggccg tgctggacgg cagcctggat caatttatcg
    32401 aagcaagttt gaaagcaggg ttatgaggaa ccaacatgtc tgaacaacac gcacagggcg
    32461 ctgacgcggt agtcgatctt aacaatgaac tgaaaacgcg tcgtgagaag ctggcgaacc
    32521 tgcgtgagca gggaattgcc ttcccgaacg atttccgtcg cgatcatacc tctgaccaat
    32581 tgcacgcaga attcgacggt aaagagaacg aagaactgga agcgctgaac atcgaagtcg
    32641 ccgttgctgg ccgcatgatg acccgccgta ttatgggtaa agcctctttt gttaccctgc
    32701 aggacgttgg cggtcgtatt cagctgtacg ttgcccgtga cgatcttccg gaaggcgttt
    32761 acaacgagca gttcaaaaaa tgggatctcg gcgacatcct cggcgcgaaa ggtaaactgt
    32821 tcaaaaccaa aaccggcgaa ctgtctatcc actgcaccga gctgcgtctg ctgaccaaag
    32881 cactgcgtcc gctgccggac aaattccacg gcttgcagga tcaggaagcg cgctatcgtc
    32941 agcgttatct ggatctcatc tctaacgatg aatcccgcaa cacctttaaa gtgcgttcgc
    33001 agatcctctc tggcattcgc cagttcatgg taaatcgcgg ctttatggaa gttgaaacgc
    33061 cgatgatgca ggtgatccca ggcggtgccg ctgcgcgtcc gtttatcacc catcataacg
    33121 cgctggatct tgacatgtac ctgcgtatcg cgccggaact gtacctcaag cgtctggtgg
    33181 tcggtggctt cgagcgtgta ttcgaaatca accgtaactt ccgtaacgaa ggtatttccg
    33241 tacgtcataa cccagagttc accatgatgg aactctatat ggcttacgca gattacaaag
    33301 atctgatcga gctgaccgaa tcgctgttcc gtactctggc acaggatatt ctcggtaaga
    33361 cggaagtcac ctacggcgac gtgacgctgg acttcggtaa accgttcgaa aaactgacca
    33421 tgcgtgaagc gatcaagaaa tatcgcccgg aaaccgacat ggcggatctg gacaacttcg
    33481 actctgcaaa agcgattgct gaatctatcg gcatccacgt tgagaagagc tggggtctgg
    33541 gccgtatcgt taccgagatc ttcgaagaag tggcagaagc acatctgatt cagccgacct
    33601 tcattactga atatccggca gaagtttctc cgctggcgcg tcgtaacgac attaacccgg
    33661 aaatcacaga ccgctttgag ttcttcatcg gtggtcgtga aatcggtaac ggctttagcg
    33721 agctgaatga cgcggaagat caggcgcagc gcttcctgga tcaggttgcc gcgaaagacg
    33781 caggtgacga cgaagcgatg ttctacgacg aagattacgt caccgcactg gaacacggct
    33841 taccgccgac agcaggtctg ggaattggta tcgaccgtat ggtaatgctg ttcaccaaca
    33901 gccataccat ccgcgacgtt attctgttcc cggcgatgcg tccagtaaaa taagcattac
    33961 gttatgctaa taaccccggc aaatgtcggg gttttttaat tgtgctgcgc gaaagcagac
    34021 aacaattttc ttgcttcact attggctgcc tgcattacca tccacggact gaacgcccac
    34081 ggcgtggcat caataccgtg taatacatct gctaaatcac accattgata atccatcact
    34141 tcatcatcgt tgatctgtaa cgcactgttg gtgcgtgcgg caaataccgg acacacttca
    34201 ttttccacaa tgccattcgg atcggtggcg cgatagcgaa agtcaggata gatagattca
    34261 ggaggcgtaa tttccacgcc aagctcataa cggcaacggc ggatcactgc gtcttcgttg
    34321 ctttctccca gttgtgggtg cccacaaacc gagttagtcc acacgccagg ccatgctttt
    34381 ttgctcagtg cgcggcgggt aactaataat tgccccttgg cattaaacag ccaactggag
    34441 aacgcgagat gtaagagggt gtctgccgtg tgtgcggcat acttttccag cgtacccgtg
    34501 ggaactccct gtgcattcaa taaaatgacg tgttccgttt gcataatttc tcacatgtaa
    34561 ttctgatcac tcatcattat agataattga agagtgaaat gattaaccaa gtgagcgttt
    34621 atcgacaacc gcccgttttg agcggatgcc gacaggtaaa aaccatttaa aaaagtagca
    34681 tcatatattt gaagcgactt tcaatggcca ttgcaacaca gtcagaaatg acaggaatag
    34741 agagagtaaa aagcaacagc agactgaata tagcgcgcat taaaagattt atattattct
    34801 ccatgctcat ttttcttcag cttgcgcatc agaagccaca tacgtactgt cctgactttt
    34861 aaatctttat cagagacgga ttccttcacc aggtcagcat gatgctgata gccattaaag
    34921 aagacgttca gcacaacggc gctaagggtt gcgagcataa tgccgctatg tagcagcggt
    34981 tgcagtacgg ccggtaactt agaaaagaaa tcgtgagaga gcgtcggagt catgccaacg
    35041 ccgagactga tcgccacaat atagaggttg taacggttgg tggtgtagtt acagcgcgac
    35101 agaattcgaa tccctgtcgc cagtaccatg ccgaacatca ctagaccagc gccgcccagc
    35161 acaaattgcg gaatggaggc taccagcacc gccatttttg gcaccatgcc aaacaggatt
    35221 aatataattc ccgaagaaat acacacccag cggctatgaa cgcgcgtcac gctaaccagg
    35281 ccaacgtttt gagaaaatga cgtgtggggg aagctgttaa acgtgccgcc tatcattgtc
    35341 cctacgccat cgacacgcag cccgcgaata atatcgtgtg aagagagttt acgaccgact
    35401 atttcaccca gtgccaggaa catccccatc gactcgataa acacgatgat taacacggca
    35461 gtcatggtca gaatggaaac gggatcgaaa atcggcatac caaacgacat cggggtgaca
    35521 atcgcaaacc acaaggcatc atgtagcccg gataaattga cttcattcat catccacgaa
    35581 agtaaaaagc caaatacaat ccccagtaat acggcgacgt tggacataaa tcctttcgca
    35641 tagcgagtaa tgagcaagat aaaaattaag acggcaaagg agatacctga ataaacggga
    35701 ttaccatatt gcggattccc tttacctccg gcggcccagt caatacccac ctgaatgatg
    35761 ctaagtccga cagaagtaat aaccacaccg gtaaccagtg gcgggaataa aggcatcaag
    35821 cgaccgataa gtggcgctaa taatgtggtg ataaaacccg cggcgatagt ggcaccaaat
    35881 atccccagca ggccaatatc cgggttcatc ccaatggcta tcattggtgt tacagcagca
    35941 aaggtcaccg acataatcac cggcaggcgg atccccataa agcggccgat accgatacat
    36001 tgcaataatg tgacgatccc gcagcaaaag agatccgagc taatgagcat cgcaatagct
    36061 tcttttgaga ggcccagtcg gtcaccaatc ataagaggaa cagcgactgc acctgcgtac
    36121 atgacaagga cgtgttgcag accgagtatg atcagctttc ctggtgataa tatgcggtca
    36181 acctcatcag ttgggcggtc ttgcccagaa gatgagagaa gttgggaatc tatggcgctc
    36241 atcagtgttt ctcctttcgc ccgccagagt aaaaagcaac cgtttacgtt aatgaaactg
    36301 tctaaacaca tgctcgtgga gtgccagttt ttgcgaggaa ggggagttag agacaggaat
    36361 tgcggaggca atcacataat cgtggttaaa ccacgaaaat gagaagagaa cctgacaatg
    36421 gaattatctg taattttctc atattgatat ttcattaatc attctggcat gtcgtactct
    36481 cgcatttaat cgtttttatc tggatagcac tcttttgatc ggcaatgttg aaataatgaa
    36541 agcggcatag attgaggggc aataatttga actcagtcgc aaaattataa ttaaaacggt
    36601 catgctacct aatatatgcc cgttt
//
LOCUS       DAJVSY010000021        36207 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.021, whole genome shotgun sequence.
ACCESSION   DAJVSY010000021 DAJVSY010000000
VERSION     DAJVSY010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 36207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36207
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.021"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(50..1698)
                     /gene="actP"
                     /locus_tag="OQQ19_000953"
                     /pseudo
     CDS             complement(50..1698)
                     /gene="actP"
                     /locus_tag="OQQ19_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418491.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cation/acetate symporter ActP"
     gene            complement(1695..2009)
                     /locus_tag="OQQ19_000954"
     CDS             complement(1695..2009)
                     /locus_tag="OQQ19_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF485 domain-containing protein"
                     /protein_id="HCS1802665.1"
                     /translation="MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLI
                     AFAPGWLGTPLNPNTSVTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQ
                     AS"
     gene            complement(2141..4100)
                     /gene="acs"
                     /locus_tag="OQQ19_000955"
                     /pseudo
     CDS             complement(2141..4100)
                     /gene="acs"
                     /locus_tag="OQQ19_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418493.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
     gene            4493..5929
                     /gene="nrfA"
                     /locus_tag="OQQ19_000956"
     CDS             4493..5929
                     /gene="nrfA"
                     /locus_tag="OQQ19_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming nitrite reductase cytochrome
                     c552 subunit"
                     /protein_id="HCS1802666.1"
                     /translation="MTRIKINARRIFSLLIPFFFFTSVHAEQTAAPAKPVTVEAKNET
                     FAPQHPDQYLSWKATSEQSERVDALAEDPRLVILWAGYPFSRDYNKPRGHAFAVTDVR
                     ETLRTGAPKNAEDGPLPMACWSCKSPDVARLIQKDGEDGYFHGKWARGGPEIVNNLGC
                     ADCHNTASPEFAKGKPELTLSRPYAARAMEAIGKPFEKAGRFDQQSMVCGQCHVEYYF
                     DGKNKAVKFPWDDGMKVENMEQYYDKIAFSDWTNSLSKTPMLKAQHPEYETWTAGIHG
                     KNNVTCIDCHMPKVQNAEGKLYTDHKIGNPFDNFAQTCANCHTQDKAALQKVVAERKQ
                     SINDLKIKVEDQLVHAHFEAKAALDAGATEAEMKPIQDDIRHAQWRWDLAIASHGIHM
                     HAPEEGLRMLGTAMDKAADARTKLARLLATKGITHEIQIPDISTKEKAQQAIGLNMEQ
                     IKAEKQDFIKTVIPQWEEQARKNGLLSQ"
     gene            5974..6540
                     /gene="nrfB"
                     /locus_tag="OQQ19_000957"
     CDS             5974..6540
                     /gene="nrfB"
                     /locus_tag="OQQ19_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418495.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase pentaheme
                     subunit"
                     /protein_id="HCS1802667.1"
                     /translation="MSVLRSLLTAGVLASGLLWSLNGITATPAAQASGDRYEVTQQRN
                     PDAACLDCHKPDTEGMHGKHASVINPNNKLPVTCTNCHGQPSPQHREGVKDVMRFNEP
                     MYKVGEQNSVCMSCHLPEQLQKAFWPHDVHVTKVACASCHSLHPQQDTMQTLSDKGRI
                     KICVDCHSDQRTNPNFNPASVPLLKEQP"
     gene            6537..7208
                     /gene="nrfC"
                     /locus_tag="OQQ19_000958"
     CDS             6537..7208
                     /gene="nrfC"
                     /locus_tag="OQQ19_000958"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase Fe-S protein"
                     /protein_id="HCS1802668.1"
                     /translation="MTWSRRQFLTGVGVLAAVSGTAGRVVAKTLNINGVRYGMVHDES
                     LCIGCTACMDACREVNKVPEGVSRLTIIRSEPQGEFPDVKYRFFRKSCQHCDHAPCVD
                     VCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTKTADKCDFCRKTNL
                     QAGKLPACVEACPTKALTFGNLDDPNSEISQLLRQKPTYRYKLALGTKPKLYRVPFKY
                     GEVSQ"
     gene            7205..8161
                     /gene="nrfD"
                     /locus_tag="OQQ19_000959"
     CDS             7205..8161
                     /gene="nrfD"
                     /locus_tag="OQQ19_000959"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase subunit NrfD"
                     /protein_id="HCS1802669.1"
                     /translation="MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQ
                     AGGADSTLLRTTLIVGPGAVILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQ
                     LYMVVLVLWLAKIFEHDLLAQQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLG
                     AYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAHFVH
                     RMEIPVVWGEIFLLVAFFVGLALGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPM
                     LLKSWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA"
     gene            8181..9899
                     /locus_tag="OQQ19_000960"
     CDS             8181..9899
                     /locus_tag="OQQ19_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014640253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HCS1802670.1"
                     /translation="MDVFLPEVGFLALLLSLGVNVLTPLTAFAGVRLRWPAMMRLTCI
                     GILAQCALLLLAFGVLTYCFLISDFSVIYVAQHSYSLLSWELKLAAVWGGHEGSLLLW
                     VLLLSAWSALFAWHYRQQTDPLFPLTLAVLSLMLAALLLFVVLWSDPFVRIFPPAIEG
                     RDLNPMLQHPGLIFHPPLLYLGYGGLMVAASVALASLLRGEFDAASARICWRWALPGW
                     SALTAGIILGSWWAYCELGWGGWWFWDPVENASLLPWLSATALLHSLSLTRQRGIFRH
                     WSLLLAIVTLMLSLLGTLIVRSGILVSVHAFALDNVRAVPLFSLFALISLASLALYGW
                     RARDGGPAVRFSGLSREMLILATLLLFCAVLLIVLVGTLYPMIYGLLGWGRLSVGAPY
                     FNRATLPFGLLMLVVIVLATFVSGKRVQLPALVAHAGVLLFAAGIVVSSVSRQEISLN
                     LQPGQQVTLAGYTFRFERLDLQAKGNYTSEKAIVALFDHQQRIGELMPERRFYEVRRQ
                     QMMEPSIRWNGIHDWYVVMGEKTGADRYAFRLYVQSGVRWIWGGGLLMIAGALLSGWR
                     GRKRDE"
     gene            9892..10275
                     /gene="nrfF"
                     /locus_tag="OQQ19_000961"
     CDS             9892..10275
                     /gene="nrfF"
                     /locus_tag="OQQ19_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfF"
                     /protein_id="HCS1802671.1"
                     /translation="MNKGLLTLLLLFTCFARAQVVDTWQFANPQQQQQALNIASQLRC
                     PQCQNQNLLESNAPVAVSMRHQVYSMVAEGKNEVEIIGWMTERYGDFVRYNPPLTGQT
                     LVLWALPVVLLLLMALILWRVRAKR"
     gene            10272..10868
                     /gene="nrfG"
                     /locus_tag="OQQ19_000962"
     CDS             10272..10868
                     /gene="nrfG"
                     /locus_tag="OQQ19_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfG"
                     /protein_id="HCS1802672.1"
                     /translation="MKEPKIPVKMLTTLTILMVFLCVGSYLLSPKWQAVHAEYQRQRD
                     PLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL
                     RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANY
                     AQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSD"
     gene            11209..12522
                     /gene="gltP"
                     /locus_tag="OQQ19_000963"
     CDS             11209..12522
                     /gene="gltP"
                     /locus_tag="OQQ19_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate:proton symporter GltP"
                     /protein_id="HCS1802673.1"
                     /translation="MKNIKFSLAWQILFAMVLGILLGSYLHYHSDSRDWLVVNLLSPA
                     GDIFIHLIKMIVVPIVISTLVVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITL
                     ANVFQPGAGVDMSQLATVDISKYQSTTEAVQSSSHGIMGTILSLVPTNIVASMAKGEM
                     LPIIFFSVLFGLGLSSLPATHREPLVTVFRSISETMFKVTHMVMRYAPVGVFALIAVT
                     VANFGFSSLWPLAKLVLLVHFAILFFALVVLGIVARLCGLSVWILIRILKDELILAYS
                     TASSESVLPRIIEKMEAYGAPASITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGID
                     LSIWQEIILVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMA
                     RTALNVVGNALAVLVIAKWEHKFDRKKALAYEREVLGKFDKTADQ"
     gene            complement(12713..13401)
                     /locus_tag="OQQ19_000964"
                     /pseudo
     CDS             complement(12713..13401)
                     /locus_tag="OQQ19_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313087.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
     gene            complement(13495..15642)
                     /gene="fdhF"
                     /locus_tag="OQQ19_000965"
     CDS             complement(13495..15642)
                     /gene="fdhF"
                     /locus_tag="OQQ19_000965"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(15223..15225),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HCS1802674.1"
                     /translation="MKKVVTVCPYCASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLK
                     GYYGWDFINDTQILTPRLKTPMIRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDA
                     IQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVUHGPSVAGLHQSVGNGAMSNA
                     INEIDNTDLVFVFGYNPADSHPIMANHVINAKRNGAKIIVCDPRKIETARIADMHIAL
                     KNGSNIALLNAMGHVIIEENLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSAS
                     EIRQAARMYAQAKSAAILWGMGVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVNPVRG
                     QNNVQGACDMGALPDTYPGYQYVKDPANREKFAKAWGVESLPAHTGYRISELPHRAAH
                     GEVRAAYIMGEDPLQTDAELSAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGE
                     HEGVFTAADRGFQRFFKAVEPKWDLKTDWQIISEIATRMGYPMHYNNTQEIWDELRHL
                     CPDFYGATYEKMGEQGFIQWPCRDTSDADQGTSYLFKEKFDTPNGLAQFFTCDWVAPI
                     DKLTDEYPMVLSTVREVGHYSCRSMTGNCAALAALADEPGYAQINTEDAKRLGIEDEA
                     LVWVHSRKGKIITRAQVSDRPNKGAIYMTYQWWIGSCNELVTENLSPITKTPEYKYCA
                     VRVEPIADQRAAEQYVIDEYNKLKTRLREAALA"
     gene            complement(15840..17306)
                     /gene="mdtP"
                     /locus_tag="OQQ19_000966"
     CDS             complement(15840..17306)
                     /gene="mdtP"
                     /locus_tag="OQQ19_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit MdtP"
                     /protein_id="HCS1802675.1"
                     /translation="MINRQLSRLLLCSILGSTTLISGCALVRKDSAPHQQLKPEQIKL
                     ADDIHLASSGWPQAQWWKQLNDPQLDALIQRTLSGSHTLAEAKLREEKAQSQADLLDA
                     GSQLQVAALGMLNRQRVSANGFLSPYAMDAPSLGMDGPYYTEATVGLFAGLDLDLWGV
                     HRSAVAAAIGAHNAALAETAAVELSLTTGVAQLYYSMQASYQMLDLLEQTRDMIDYAV
                     KAHQSKVAHGLEAQVPFHGARAQILAVDKQIAAVKGQITETRESLRALIGAGASDMPE
                     IKPVALPRVQTGIPATLSYELLARRPDLQAMRWYVQASLDQVDSARALFYPSFDIKAF
                     FGLDSIHLDTLFKKTSRQFNFIPGLKLPLFDGGRLNANLEGTRAASNMMIERYNQSVL
                     NAVRDVAVNGTRLQTLNDEREMQAERVEATRFTQRAAEAAYQRGLTSRLQATEARLPV
                     LAEEMSLLMLDSRRVIHSIQLMKSLGGGYQAAPVVEKK"
     gene            complement(17303..19354)
                     /gene="mdtO"
                     /locus_tag="OQQ19_000967"
     CDS             complement(17303..19354)
                     /gene="mdtO"
                     /locus_tag="OQQ19_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418505.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter permease subunit
                     MdtO"
                     /protein_id="HCS1802676.1"
                     /translation="MSALNSLPLPVVRLLAFFHEELSERRPGRVPQIVQLWVGCLLVI
                     LISMTFEIPFVALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSYGEP
                     LIRLIIAGPILMGCMFLMRTHRLGLVFFAVAIVAIYGQTFPAMLDYPEVVVRLTLWCI
                     VVGLYPTLLMTLIGVLWFPSRAISQMHQALNDRLDDAISHLTDSLAPLPETRIEREAL
                     ALQKLNVFCLADDANWRTQSAWWQSCVATVTYIYSTLNRYDPTSFADSQAIIEFRQKL
                     ASEINKLQHAVAEGQCWQSDWRISESEAVAARECNLENICQTLLQLGQMNPNTPPTPA
                     AKPPSMVADAFTNPDYIRYAVKTLLACLICYTFYSGVDWEGIHTCMLTCVIVANPNVG
                     SSYQKMVLRFGGAFCGAILALLFTLLVMPWLDNIVELLFVLAPIFLLGAWIATSSERS
                     SYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGIIIGTVVSAVIYTFVWPESEART
                     LPQKLAGALGMLSKVMRIPRQQEVTALRTYLQIRIGLHAAFNACEEMCQRVALERQLD
                     SEERALLIERSQTVIRQGRDLLHAWDATWNSAQALDNALQPDRAGQFADALEKYAAGL
                     ATALSCSPQITLEETPASQAILPTLLKQEQHVCQLFARLPDWTAPALTPATEQAQGAT
                     Q"
     gene            complement(19354..20385)
                     /gene="mdtN"
                     /locus_tag="OQQ19_000968"
     CDS             complement(19354..20385)
                     /gene="mdtN"
                     /locus_tag="OQQ19_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter periplasmic adaptor
                     subunit MdtN"
                     /protein_id="HCS1802677.1"
                     /translation="MESTPKKAPRSKFPALLVVALALVALVFVIWRVDSAPSTNDAYA
                     SADTIDVVPEVSGRIVELAVTDNQAVKQGDLLFRIDPRPYEANLAKAEASLAALDKQI
                     MLTQRSVDAQQFGADSVNATVEKARAAAKQATDTLRRTEPLLKEGFVSAEDVDRARTA
                     QRAAEADLNAVLLQAQSAASAVSGVDVLVAQRAAVEADIALTKLHLEMATVRAPFDGR
                     VISLKTSVGQFASAMRPIFTLIDTRHWYVIANFRETDLKNIRSGTPATIRLMSDSGKT
                     FEGKVDSIGYGVLPNDGGLVLGGLPKVSRSINWVRVAQRFPVKIMVDKPDPEMFRIGA
                     SAVANLEPQ"
     gene            complement(20404..20679)
                     /locus_tag="OQQ19_000969"
     CDS             complement(20404..20679)
                     /locus_tag="OQQ19_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802678.1"
                     /translation="MPTVLSRMAMQLKKTAWIIPVFMVSGCSLSPAIPVIGAYYPSWF
                     FCAIASLILTLITRRIIQRANINLAFVGIIYTALFAVYAMLFWLAFF"
     gene            complement(20888..22873)
                     /gene="yjcS"
                     /locus_tag="OQQ19_000970"
     CDS             complement(20888..22873)
                     /gene="yjcS"
                     /locus_tag="OQQ19_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418507.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl sulfatase YjcS"
                     /protein_id="HCS1802679.1"
                     /translation="MNNSRLFRLSRIVIALTAASGMMVNTANAKEEAKAATQYTQQVN
                     QNYAKSLPFSDRQDFDDAQRGFIAPLLDEGILRDANGKPYYRGEDYKFDINAPAPETV
                     NPSLWRQSQLNGISGLFKVTDRMYQVRGQDISNITFIEGDTGIIVIDPLVTPPSAKAA
                     LDLYFQNRPQKPIVAVIYTHSHTDHYGGVKGIISEADVKSGKVQVIAPAGFMDEAISE
                     NVLAGNIMSHRALYSYGLLLAHNPQGNIGNGLGVTLASGYPSIIAPNKTITKTGEKMI
                     IDGLEFDFLMTPGSEAPAEMHFYIPALKALCTAENATHTLHNFYTLRGAKTRDTSKWT
                     EYLNETLDMWGNDAEVLFMPHTWPVRGNKHINDYIGKYRDTIKYIHDQTLHLANQGYT
                     MNEIGDMIKLPPALANNWASRGYYGSVSHNARAVYNFYLGYYDGNPANLHPYGQVEMG
                     KRYVQALGGSARVISLAQEANKQGDYRWSAELLKQVIAANPGDQVAKNLQANNFEQLG
                     YQAESATWRGFYLTGAKELREGVHKFSHGTTGSPDTIRGMSVEMLFDFMSVRLDSAKA
                     AGKNISLNFNMSNGDNLNLTLNDSVLNYRKTLQPQADASFYISREDLHAVLTGQAKMA
                     DLVKAKKAKIIGNGAKLEEIIACLDNFDLWVNIVTPN"
     gene            23126..23443
                     /locus_tag="OQQ19_000971"
     CDS             23126..23443
                     /locus_tag="OQQ19_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpiB/LacA/LacB family sugar-phosphate isomerase"
                     /protein_id="HCS1802680.1"
                     /translation="MQPVFLFKKRTGAMGGHVAGTAGFCVAVPAFYSWSMSEVIDKDT
                     RSSERTDYPHYASEVALAFGSRVVGLELAKMIVDAWLGAQYEGGRHQQRVEAITAIEQ
                     RRN"
     gene            23512..23841
                     /gene="yjdP"
                     /locus_tag="OQQ19_000972"
     CDS             23512..23841
                     /gene="yjdP"
                     /locus_tag="OQQ19_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YjdP"
                     /protein_id="HCS1802681.1"
                     /translation="MKRFPLFLLFTLLTLSTVPAQADIIDDTIGNIQQAINDAYNPDR
                     GRDYEDSRDDGWQREVSDDRRRQYDDRRRQFEDRRRQLDDRQRQLDQERRQLEDEERR
                     MEDEYGR"
     gene            complement(23988..24746)
                     /gene="phnP"
                     /locus_tag="OQQ19_000973"
     CDS             complement(23988..24746)
                     /gene="phnP"
                     /locus_tag="OQQ19_000973"
                     /EC_number="3.1.4.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate metabolism protein PhnP"
                     /protein_id="HCS1802682.1"
                     /translation="MSLTLTLTGTGGAQGVPAWGCECVACARARRSPQYRRQPCSGVV
                     KFNDAITLIDAGLHDLADRWPPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPP
                     DEQGCDDLFKHPGLLDFSHTVEPFVVFDLQGLQVTPLPLNHSKLTFGYLLETAHSRVA
                     WLSDTAGLPEKTLKFLRNNQPQVMVIDCSHPPREDAPRSHCDLNTVLALNQVIRSPRV
                     ILTHISHQFDAWLMENALPSGFEAGFDGMEIGVA"
     gene            complement(24748..25197)
                     /gene="phnO"
                     /locus_tag="OQQ19_000974"
     CDS             complement(24748..25197)
                     /gene="phnO"
                     /locus_tag="OQQ19_000974"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoalkylphosphonate N-acetyltransferase"
                     /protein_id="HCS1802683.1"
                     /translation="MPACELRPATQYDTDAVYALICELKQAEFDHHAFRVGFNANLRD
                     PSMRYPSMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQACGLNVGSKL
                     LAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHFRFTKAL"
     gene            complement(25184..25741)
                     /gene="phnN"
                     /locus_tag="OQQ19_000975"
     CDS             complement(25184..25741)
                     /gene="phnN"
                     /locus_tag="OQQ19_000975"
                     /EC_number="2.7.4.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 1,5-bisphosphokinase"
                     /protein_id="HCS1802684.1"
                     /translation="MMGKLIWLMGPSGSGKDSLLAELRLREQTQLLVAHRYITRDASA
                     GSENHIALSEREFFTRAGQNLLALSWHANGLYYGVGIEIDLWLHAGFDVVVNGSRAHL
                     PQARARYQSALLPVCLQVSPEILRQRLKNRGRENTSEINARLARAARYTPQDCHTLNN
                     DGSLRQSVDTLLTLIHQKEKHHACL"
     gene            complement(25741..26877)
                     /gene="phnM"
                     /locus_tag="OQQ19_000976"
     CDS             complement(25741..26877)
                     /gene="phnM"
                     /locus_tag="OQQ19_000976"
                     /EC_number="3.6.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-ribose 1-methylphosphonate
                     5-triphosphate diphosphatase"
                     /protein_id="HCS1802685.1"
                     /translation="MIINNVKLVLENEVVHGSLEVQDGEIRAFAESQSRLPEAMDGEG
                     GWLLPGLIELHTDNLDKFFTPRPKVDWPAHSAMSSHDALMVASGITTVLNAVAIGDVR
                     DGGDQLENLEKMINTIEETQKRGVNRAEHRLHLRCELPHHTTLPLFEKLVQREPVTLV
                     SLMDHSPGQRQFANREKYREYYQGKYSLTDAQMQQYEEEQLALAARWSQPNRESIAAL
                     CRARQIALASHDDATHAHVAESHQLGSVIAEFTTTFEAAEASRKHGMNVLMGAPNIVR
                     GGSHSGNVAASELAQLGLLDILSSDYYPASLLDAAFRVADDESNRFTLPQAVRLVTKN
                     PAQALNLQDRGVIGEGKRADLVLAHRQGNHIHIDHVWRQGKRVF"
     gene            complement(26874..27554)
                     /gene="phnL"
                     /locus_tag="OQQ19_000977"
     CDS             complement(26874..27554)
                     /gene="phnL"
                     /locus_tag="OQQ19_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnL"
                     /protein_id="HCS1802686.1"
                     /translation="MINVQNVSKTFILHQQNGVRLPVLQRASLTVNAGECVVLHGHSG
                     SGKSTLLRSLYANYLPDEGQIQIKHGDEWVDLVTAPARKVVEIRKTTVGWVSQFLRVI
                     PRISALEVVMQPLLDTGVPREACAAKAARLLTRLNVPERLWHLAPSTFSGGEQQRVNI
                     ARGFIVDYPILLLDEPTASLDAKNSAAVVELIHEAKARGAAIVGIFHDEAVRNDVADR
                     LHPMGASS"
     gene            complement(27665..28423)
                     /gene="phnK"
                     /locus_tag="OQQ19_000978"
     CDS             complement(27665..28423)
                     /gene="phnK"
                     /locus_tag="OQQ19_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnK"
                     /protein_id="HCS1802687.1"
                     /translation="MNQPLLSVNNLTHLYAPGKGFSDVSFDLWPGEVLGIVGESGSGK
                     TTLLKSISARLTPQQGEIHYESRSLYAMSEADRRRLLRTEWGVVHQHPLDGLRRQVSA
                     GGNIGERLMATGARHYGDIRATAQKWLEEVEIPANRIDDLPTTFSGGMQQRLQIARNL
                     VTHPKLVFMDEPTGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLV
                     MKQGQVVESGLTDRVLDDPHHPYTQLLVSSVLQN"
     gene            complement(28420..29265)
                     /gene="phnJ"
                     /locus_tag="OQQ19_000979"
     CDS             complement(28420..29265)
                     /gene="phnJ"
                     /locus_tag="OQQ19_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-ribose 1-methylphosphonate 5-phosphate
                     C-P-lyase PhnJ"
                     /protein_id="HCS1802688.1"
                     /translation="MANLSGYNFAYLDEQTKRMIRRAILKAVAIPGYQVPFGGREMPM
                     PYGWGTGGIQLTASVIGESDVLKVIDQGADDTTNAVSIRNFFKRVTGVNTTERTDDAT
                     LIQTRHRIPETPLTEDQIIIFQVPIPEPLRFIEPRETETRTMHALEEYGVMQVKLYED
                     IARFGHIATTYAYPVKVNGRYVMDPSPIPKFDNPKMDMMPALQLFGAGREKRIYAVPP
                     FTRVESLDFDDHPFTVQQWDEPCAICGSTHSYLDEVVLDDAGNRMFVCSDTDYCRQQS
                     EAKNQ"
     gene            complement(29258..30316)
                     /gene="phnI"
                     /locus_tag="OQQ19_000980"
     CDS             complement(29258..30316)
                     /gene="phnI"
                     /locus_tag="OQQ19_000980"
                     /EC_number="2.7.8.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-ribose 1-methylphosphonate
                     5-triphosphate synthase subunit PhnI"
                     /protein_id="HCS1802689.1"
                     /translation="MYVAVKGGEKEIDAAHALQESRRRGNTDLPELSVAQIEQQLNLA
                     VDRVMTEGGIADRELAALALKQASGDNVEAIFLLRAYRTTLAKLAVSEPLDTTEMRLE
                     RRISAVYKDIPGGQLLGPTYDYTHRLLDFTLLANGEAPTLTTADSEQSPSPHVFSLLA
                     RQGLAKFEEDSGAQPDDITRTPPVYPCSRSSRLQQLMRGDEGYLLALAYSTQRGYGRN
                     HPFAGEIRSGYIDVSIMPEELGFAVNVGELLMTECEMVNGFIDPPDEPPHFTRGYGLV
                     FGMSERKAMALVDRALQAPEYGEHATGPAQDEEFVLAHADNVEAAGFVSHLKLPHYVD
                     FQAELELLKRLQQEQNHG"
     gene            complement(30316..30900)
                     /gene="phnH"
                     /locus_tag="OQQ19_000981"
     CDS             complement(30316..30900)
                     /gene="phnH"
                     /locus_tag="OQQ19_000981"
                     /EC_number="2.7.8.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnH"
                     /protein_id="HCS1802690.1"
                     /translation="MTLETAFMLPVQDAQHSFRRLLKAMSEPGVIVALHQLKRGWQPL
                     NIATTSVLLTLADNDTPVWLSAPLSNDIVSQSLRFHTNAPLVNQSELATFAVTDEAIS
                     SEQLNALSSGTAVAPEAGATLILQVVSLSGGRMLRLTGAGIAEERMIAPQLPECILHE
                     LTERPHPFPLGIDLILTCGERLLAIPRTTHVEVC"
     gene            complement(30897..31349)
                     /gene="phnG"
                     /locus_tag="OQQ19_000982"
     CDS             complement(30897..31349)
                     /gene="phnG"
                     /locus_tag="OQQ19_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnG"
                     /protein_id="HCS1802691.1"
                     /translation="MHADIATRQHWMSMLAHSQPAELAARLNALNITANYEVIRTAET
                     GLVQIQPRMGGTGERFFAGDATLTRAAVRLTDGPLGYSWVLGRDKQHAERCALIDALM
                     QQSRHFQNLSETLIAPLDADRMARIAARQAEVNASRVDFFTMVRGDNA"
     gene            complement(31350..32075)
                     /gene="phnF"
                     /locus_tag="OQQ19_000983"
     CDS             complement(31350..32075)
                     /gene="phnF"
                     /locus_tag="OQQ19_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate metabolism transcriptional regulator
                     PhnF"
                     /protein_id="HCS1802692.1"
                     /translation="MHLSTHPTSYPTRYQEIAAKLEQELRQHYRCGDYLPAEQQLAAR
                     FEVNRHTLRRAIDQLVEKGWVQRRQGVGVLVLMRPFDYPLNAQARFSQNLLDQGSHPT
                     SEKLLSVLRPASGHVADALGITEGENVIHLRTLRRVNGIALCLIDHYFADLTLWPTLQ
                     RFDSGSLHDFLREQTGIALRRSQTRISARRAQAKECQRLEIPNMSPLLCVRTLNHRDG
                     ESSPAEYSVSLTRADMIEFTMEH"
     gene            complement(32096..32875)
                     /gene="phnE"
                     /locus_tag="OQQ19_000984"
     CDS             complement(32096..32875)
                     /gene="phnE"
                     /locus_tag="OQQ19_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313113.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter, permease protein
                     PhnE"
                     /protein_id="HCS1802693.1"
                     /translation="MQTITIAPPKRSWFSLLSWAVVLAVLVVSWQGAEMAPLTLIKDG
                     GNMATFVADFFPPDFSQWQDYLTEMAVTLQIAVWGTALAVVLSIPFGLMSAENLVPWW
                     VYQPVRRLMDACRAINEMVFAMLFVVAVGLGPFAGVLALFIHTTGVLSKLLSEAVEAI
                     EPGPVEGIRATGANKLEEILYGVLPQVMPLLISYSLYRFESNVRSATVVGMVGAGGIG
                     VTLWEAIRGFQFQQTCALMVLIIVTVSLLDFLSQRLRKHFI"
     gene            complement(33001..34017)
                     /gene="phnD"
                     /locus_tag="OQQ19_000985"
                     /pseudo
     CDS             complement(33001..34017)
                     /gene="phnD"
                     /locus_tag="OQQ19_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418529.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter substrate-binding
                     protein"
     gene            complement(34042..34830)
                     /gene="phnC"
                     /locus_tag="OQQ19_000986"
     CDS             complement(34042..34830)
                     /gene="phnC"
                     /locus_tag="OQQ19_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709835.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter ATP-binding protein"
                     /protein_id="HCS1802694.1"
                     /translation="MQTIIRVEKLAKTFNQHQALHAVDLNIHHSEMVALLGPSGSGKS
                     TLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRAHTGYIFQQFNLVNRLS
                     VLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQR
                     VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALR
                     YCERIVALRQGHVFYDGSSQQFDNERFDHLYRSINRIEENAKAA"
     gene            complement(34963..35406)
                     /gene="yjdN"
                     /locus_tag="OQQ19_000987"
     CDS             complement(34963..35406)
                     /gene="yjdN"
                     /locus_tag="OQQ19_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family metalloprotein YjdN"
                     /protein_id="HCS1802695.1"
                     /translation="MPLSPYLSFAGNCSDAIAYYQRTLGAELLYKISFGEMPKSAQDS
                     AENCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSGKASYSGFTLVLDSQQVEEGKRW
                     FDNLAANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVVKQQPTQ"
     gene            complement(35566..35901)
                     /locus_tag="OQQ19_000988"
     CDS             complement(35566..35901)
                     /locus_tag="OQQ19_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phnA family protein"
                     /protein_id="HCS1802696.1"
                     /translation="MSLPHCPKCNSEYTYEDNGMYICPECAYEWNDTEPAQESDELIV
                     KDANGNLLADGDSVTIIKDLKVKGSSSMLKIGTKVKNIRLVEGDHNIDCKIDGFGPMK
                     LKSEFVKKN"
BASE COUNT         7831 a         9709 c        10223 g         8444 t
ORIGIN      
        1 ctggagagga agagtattcc ccggtcaggc gaccggggaa ggggagagat taatgtgcgc
       61 ggccttgctc aacgccaaag ccggtctggg agcggataaa ctgcgcacgg aacagttcac
      121 gctcgcgcgc accttccgct gagttatcgg ttgccgagaa gaaccagatg ccgaggaatg
      181 ccacgctgat agagaacagc gccgggtatt catacgggaa gatggctttt tcgtgaccga
      241 ggatctgtac ccaaatagtc gggccgagga tcatcagcac cactgcggta atcaacccca
      301 gccagccgcc cagcatcgtg ccacgggtag tcagtttcga ccagtacatg gaaagcagaa
      361 tgatcgggaa gttacagctc gccgcgatgg caaacgcaag gcctaccata aaggcgatgt
      421 tctgattctc aaacagcatg ccgaggataa tcgcaatcac acccaaaatc aggacggtga
      481 ttttcgatac ccgcagttct tcacgttcgg tcgcaccttt tttgaagacg ttagcgtaca
      541 agtcatgcga aaccgcggat gcgcccgcca gcgtcagacc cgcaaccacc gcgaggatag
      601 tggcgaaagc aaccgctgaa ataaaaccga ggaacaggtt gccgcccact gcattcgcca
      661 ggtgaacggc cgccatgttg ttaccaccaa tcagatggcc cgccgcgtct ttatattccg
      721 gattcgcacc aaccagcatg atcgcgccga agccgataat aaaggtcaga atatagaagt
      781 agcccataaa cccggtggcg tagaacacgc tcttacgtgc ttcgcgggca tcgctgactg
      841 taaagaagcg catcagaatg tgcggcaagc ccgccgtacc aaacatcagt cccagaccca
      901 gagagagcgc ggagatcgga tctttcacca gcccgcccgg cttcatgatg tcgacacctt
      961 tcgggtgtac cgccatcgct tcgctgaaca gattattgaa gctaaagccg acgtgtttca
     1021 tcaccataaa ggccataaag ctggcaccga acagcaacag cacggcttta ataatttgca
     1081 cccaggtggt cgccagcatg ccgccgaaca ggacgtacat catcatcagc acgccgacca
     1141 gcaccaccgc aatgtgatag ttaaggccaa acagcagctc gatcagttta cctgcgccta
     1201 ccatctgggc gataaggtaa agcgccacca ccaccagaga accacaggcc gaaagaatac
     1261 gaatcggccc ttgtttcagg cggtaagagg ctacatcggc aaaggtgtag cgtcccaggt
     1321 tacgcagacg ttcggcaatc aggaacaaaa tgatcggcca gcccaccagg aagcccagcg
     1381 agtaaattaa gccgtcatag ccggaggtaa acaccagcgc ggagatcccc aaaaatgagg
     1441 cggcggacat atagtcaccg gcaatcgcca gcccgttctg gaagcctgtg atattgccgc
     1501 ctgccgtgta gtagtcgcta cgagaacgta cgcgttttga tgcccagtag gtaatgccga
     1561 gcgtaaacac gacgaaaatc aggaacataa taatcgcctg ccagttcgtt ggctggcgct
     1621 ctacggcccg ctaatagcat ccgcggcgtt agctgcgaaa gggagtgtgg cggcaagcgc
     1681 cgtcagaact cttttcatga tgcttgtacc tcatgcagga cttcattatt aagacggtcg
     1741 aattcgccgt tcgcccgcca gatgtagata ccggtgagaa caaaggagat cacaatcact
     1801 ccaacaccaa ttggaatacc gcgtgtgacg ctggtgttcg gattcagcgg cgtgcccagc
     1861 cagccgggcg cgaaggcgat cagtaaaata aagccgatat aaactgccag cataataatc
     1921 gacaggatgg tggcaaaccg ttgccgtttt tcgactaact ccctgaaatg cgcattgtct
     1981 tctatccgct gataaatagt gccattcatc acagattctc cagaggtaat gtagggattg
     2041 ttttaattcc cgctccctta tgggagaagg ttaacgctcg ggtaaccctt gccgaatgta
     2101 ggccggataa ggcgtttacg ccgcatccgg caattgtggg ttacgatggc atcgcgatag
     2161 cctgcttctc ttcaagcagc ttctcgacta cgccaggatc ggcaagcgtc gaggtatcgc
     2221 ccaggttgct ggtatcgccc gccgcaattt tgcgcagaat acggcgcata attttgccgg
     2281 agcgggtttt aggcagggag tcggtccagt gcagcacgtc tggcgtcgcc agcgggccaa
     2341 tctctttacg cacccagttg cggacttctg cgtacagttc tggtgacggt tcctccccgt
     2401 gattaagcgt gacgtaggcg tagatcgcct gacctttaat attgtgcgga atacctacta
     2461 cggcggcttc ggcaatcttc ggatgcgcca ccagcgccga ctcaatctct gccgtcccca
     2521 gacggtgacc ggagacgttc agcacgtcgt ccacacgccc ggtgatccag taatagccat
     2581 cttcatcgcg acgcgcgccg tcgccgctga aatacatatt tttgaaggtg gagaagtagg
     2641 tctgttcaaa acgttcgtga tcgccaaaca gcgtacgcgc ctgacccggc caggagtcgg
     2701 tgatcaccag gctgccttcg gtagcgcctt ccagcgggtt accttcgtta tcgaccagcg
     2761 ccggttgcac gccgaagaac ggacgtgttg ccgaaccggc tttcagcccg gtagcgccag
     2821 gcagtggcgt gatcatgaaa ccgccagttt cggtctgcca ccaggtatcg accaccggac
     2881 atttctcgtt gccgattttt ttccagtacc actcccacgc ttccgggtta attggctcgc
     2941 ccacggaacc gagaatgcgc agcgacgaac ggtcggtacc ctcgatcgct ttatcgcctt
     3001 ccgccatcag cgcgcggatc gccgtgggtg cggtatagag aatattgacc tgatgcttgt
     3061 ccaccacctg cgccatacgg gcaggcgtcg gccagttggg tacgccttca aacatcagcg
     3121 tggtcgcacc gcaggccagc gggccgtaca gcaagtaact gtgtccggtc acccagccca
     3181 catcggcggt gcaccagtag atatcacccg gatgataatc aaagacatat ttaaaggtca
     3241 gcgccgcgta caccagataa ccgccggtag tatgcagcac accttttggc ttaccggtag
     3301 aaccggaggt gtagagaata aacagcggat cttcggcgtt catctcttcc gcctggtgct
     3361 gatcgctcgc ttgctcaacc aggtcgtgcc accacaggtc gcgcccttcc tgccagtcaa
     3421 ttttcccgcc agtacgcttc agtaccacca catgctctac gctggtgacg ttcgggtttt
     3481 tcagcgcgtc atcaacgttt ttcttcagcg gaatactgcc gcccggcacg cacaccttcg
     3541 tcggaagtga tcaccagtcg tgagttggaa tcaataatgc gcccggcaac ggcttccggc
     3601 gagaagccgc cgaaaatcac cgaatgcacc gcgccaatgc gggcgcaggc cagcatcgca
     3661 accgcggctt ccggcaccat cggcatataa atcgccacca catcaccttt tttaatgccc
     3721 agctcgagca gggtattggc gaagcggcag acgtcgcggt gcagctcttt atagctgata
     3781 tgtttgctct ggctggcgtc gtcgccttcc cagatgatgg cggtacgatc gccgttttct
     3841 tgcagatggc ggtcaaggca gtttgccgcc agattcagcg tgccgtcctc gtaccattta
     3901 atggacacat taccgggggc aaaggaggtg tttttcacct tctggtaagg tttgatccag
     3961 tcaagaattt ttccctgttc gccccagaag gtatcaggta cgttaataga ttgttgatac
     4021 attgcctcgt actgctgagg gtttatcagg caacggtctg cgatgttggc aggaatggtg
     4081 tgtttgtgaa tttggctcat gcttttgttc tccttgtaga atgttaataa tatgtgacat
     4141 aagcgttaaa tgtaggggta ttggcagttt tgtttagtat ttgggcgaca gatcacgcaa
     4201 aagtagaatt gtgcaaataa acggcagggt aatttttgaa ggtcagcaac aaaagttgat
     4261 taattctttg aggaacatgc agttatgcat gctgttgaaa aagaggaaga tactgactaa
     4321 ctctaaagtg gtattttaca tgcacttaca attgattaaa gacaacattc acagtgtggt
     4381 tatttgttac acataggggc gagcaatgtc atgacagtgt aggtgcggtt actgtcgtga
     4441 aaaacaataa aaaccgccat tgcaacaatg gcgcaattcg gatgaagccc ctatgacaag
     4501 gataaaaata aacgcacgcc gtatcttcag cttattgatt ccttttttct ttttcacttc
     4561 tgttcacgct gaacaaacgg cagctcccgc aaaacctgta actgtggaag cgaagaatga
     4621 aacctttgcc ccgcagcatc ccgatcaata tctctcctgg aaagccacct cggaacagtc
     4681 agagcgtgtt gacgccctgg cggaagatcc acggctggtg atcctgtggg cggggtatcc
     4741 cttctcgcgc gattacaaca agccgcgtgg acatgccttt gctgtgaccg atgtgcgtga
     4801 aaccctgcgt accggtgcgc cgaaaaatgc tgaagatggt ccgctaccga tggcgtgctg
     4861 gagttgtaaa agcccggatg tggcgcgtct gatccagaaa gacggcgaag atggctactt
     4921 ccacggtaag tgggcgcgcg gcggcccgga aatcgtcaac aacttaggtt gtgccgactg
     4981 ccataacacc gcctcaccag agttcgccaa aggcaaaccg gagttaaccc tttcccgtcc
     5041 gtatgcggct cgcgcgatgg aagccattgg taaacctttt gagaaagccg gacgtttcga
     5101 ccagcaatcg atggtttgcg gtcagtgcca tgtggagtat tacttcgacg gcaaaaacaa
     5161 agcggttaaa ttcccgtggg atgacggcat gaaagtcgaa aatatggagc agtattacga
     5221 caaaattgcc ttctctgact ggactaactc cctgtcgaaa acgccaatgc tgaaagcgca
     5281 gcacccggaa tatgaaacct ggacagcggg cattcacggt aaaaacaacg tgacctgtat
     5341 cgactgccat atgccaaaag tgcagaacgc cgaaggcaaa ctctacaccg accataaaat
     5401 tggtaatccg tttgataact tcgcccagac ttgtgcgaac tgccataccc aggacaaagc
     5461 tgccttgcaa aaagtggtcg cggaacgtaa gcagtcgatt aacgacctga aaatcaaggt
     5521 tgaagatcaa ctggttcacg ctcacttcga agcgaaagca gcgctggatg caggcgcgac
     5581 ggaagctgaa atgaagccaa ttcaggacga tatccgtcat gcccagtggc gctgggatct
     5641 ggcgatcgct tcccacggca ttcatatgca cgcaccggaa gaaggtttac ggatgctcgg
     5701 tacggcgatg gataaagcgg cggatgcacg caccaaactg gcgcgcctgc tggcgaccaa
     5761 aggcatcacc catgaaatcc agatcccgga tatctcaacc aaagagaaag cccagcaggc
     5821 cattggcctg aacatggaac aaatcaaggc cgagaagcag gacttcatca aaacggtgat
     5881 cccgcagtgg gaagaacagg cacgtaaaaa cggtctgtta agccaataac cccgttccgc
     5941 ctcgcaaggg gcggaaaaca caatggagtg aatatgagcg tattacgttc gttattaact
     6001 gctggggtgc tggcgtcggg cctgttgtgg agcctgaacg gaattaccgc tacccctgcg
     6061 gcgcaggcat ctggtgatcg ctacgaagtt acccagcagc gtaacccgga tgccgcctgt
     6121 ctggactgtc ataaaccaga taccgaaggt atgcatggca aacatgcttc cgttatcaac
     6181 ccgaataaca aattgccggt cacctgcacc aactgtcacg gccagccatc accgcaacac
     6241 cgcgaagggg tgaaagatgt gatgcgcttt aacgagccga tgtacaaggt cggagagcag
     6301 aacagcgtct gtatgtcctg tcatctgccg gaacagttgc aaaaagcgtt ctggccgcac
     6361 gatgtccacg taaccaaagt ggcgtgcgcc agctgccatt ccctgcatcc acagcaagat
     6421 acgatgcaga cgttaagtga caaaggacgg attaagattt gcgtcgattg ccacagcgat
     6481 cagcgcacca atccgaactt taacccggcg tctgttccgt tgcttaagga gcagccatga
     6541 cctggtctcg tcgccagttt ctcaccggcg tcggcgtgct ggcagccgtc agcggcaccg
     6601 cagggcgcgt ggtggcgaaa acgttgaata tcaatggggt gcgttacggc atggtgcatg
     6661 acgagtcgtt atgcatcggc tgtaccgcct gtatggatgc ttgtcgagaa gtgaacaagg
     6721 tgccggaagg cgtctcgcgc ctgacgatta ttcgtagcga gccgcagggc gaatttcctg
     6781 atgtgaaata tcgcttcttc cgtaagtctt gccagcactg cgatcatgcg ccgtgcgttg
     6841 acgtctgccc gaccggtgcg tcttttcgtg atgccgctag cgggattgtc gatgttaatc
     6901 ctgatctctg cgtcggttgt cagtactgca tcgccgcctg tccgtaccgc gtgcgcttta
     6961 tccatccggt cacgaagacg gcggacaaat gcgatttctg ccgtaaaacc aatttgcagg
     7021 ccggtaagct gcccgcgtgc gttgaggctt gcccgacgaa ggcgctgacg tttggcaatc
     7081 tggacgatcc taacagtgag atttcgcaac tgctgcgcca gaagcctact taccgctaca
     7141 agctggcgct gggaaccaaa ccgaagctgt accgcgtacc gtttaaatac ggggaggtga
     7201 gccaatgacg cagacttccg catttcattt tgaatcgctg gtgtgggact ggccgattgc
     7261 catctacctg tttttgattg gtatttctgc cggtctggtg acgctggccg tgctgttacg
     7321 tcgcttctac ccgcaggcgg gcggtgcaga cagtacgttg ctgcgcacca cgctgattgt
     7381 cgggccgggc gcggtgatcc tcggtctgtt gatcctcgtc ttccacctga caagaccgtg
     7441 gaccttctgg aagctgatgt tccactacag ttttacctcg gtgatgtcga tgggggtgat
     7501 gctgtttcag ctttacatgg tggtgctggt gctgtggctg gcgaaaatct ttgaacatga
     7561 tttgcttgcc cagcaacaac gctggttgcc gaagctgggg atcgtgcaaa aggttctgag
     7621 cctgctgacg cccgttcatc gcggactgga aacgctgatg ctggtgttgg cggtgctgct
     7681 gggggcttat accggctttc tgctgtcggc gctgaaatcg tatccgttcc tcaataaccc
     7741 gatcctgccg gtgctgttcc tcttctccgg catctcgtcc ggtgcggcgg tggcgctgat
     7801 cgccatggcg atacgccaac gcagtaaccc gcattccacg gaagcgcact ttgttcaccg
     7861 gatggaaatc cccgtggtat ggggtgaaat cttcctgctg gtggcgtttt ttgtcggtct
     7921 ggcgctgggc gatgacggta aagttcgtgc gctggtggcg gcattaggtg gcggtttctg
     7981 gacgtggtgg ttctggcttg gtgtcgccgg gctggggctg attgtgccaa tgttgctcaa
     8041 atcgtgggtc aatcgcagtt ccggcattcc tgccgtgctg gcggcgtgtg gggccagtct
     8101 ggtcggcgtg ttgatgctgc gctttttcat tctctacgcc ggacagttga cggtggcgta
     8161 agccagaaaa gaggtggttt ctggacgtat tccttcctga agtcggtttt ctggcgttgt
     8221 tgttaagtct cggggtcaac gtgttgaccc cgttgacggc ctttgcggga gtgcggttgc
     8281 gctggcctgc catgatgcga ctcacttgca tcggcattct ggcgcagtgc gcgctcctgc
     8341 tgctcgcctt tggcgtactg acgtattgtt ttctcatcag cgatttctcg gtcatttatg
     8401 tcgcccaaca tagctacagc ctgctgtcgt gggaactcaa actggcggcg gtgtggggcg
     8461 gtcatgaagg ttcgctgctg ctttgggtgc tgctgctttc cgcctggagc gcgctgtttg
     8521 cctggcatta tcggcagcaa accgatccgc tatttccgct gacgctagcc gttttatctc
     8581 tcatgctcgc cgcactgcta ctgtttgtgg tgctgtggtc cgatcccttc gtgcggatat
     8641 ttccaccagc aatcgaaggc cgcgatctca atccgatgct gcaacatccc ggtcttatct
     8701 ttcatccacc gctgctttac cttggctatg gcggtttgat ggtagcggcg agcgtggcgc
     8761 tggcgagtct actgcgcggc gagtttgatg cggccagcgc ccgaatttgc tggcgctggg
     8821 cgttacctgg ctggagtgca ttaacggcgg ggatcatcct cggttcctgg tgggcctact
     8881 gcgaactcgg ctggggcggc tggtggttct gggatccggt ggaaaatgcc tctttattac
     8941 cctggctttc tgccactgcg ctgctgcaca gtttatccct gacacgccag cgggggattt
     9001 ttcgccactg gtcgctgtta ctggcgatag ttactctgat gctgtcgctg ctgggcacct
     9061 taattgtccg ttctggcatt ctggtttcgg ttcatgcgtt cgcgctggat aacgtccgcg
     9121 ccgtgccgtt gttcagcctg tttgcactga ttagccttgc gtctctggct ctgtatggct
     9181 ggcgagcgcg ggacggtggc ccggcggtgc gtttttcggg gttatcgcgg gaaatgttaa
     9241 tcctcgctac gctgttgctg ttttgcgcag tgctactgat cgtgctggtg ggaacgcttt
     9301 atccgatgat ttacggtctg ctgggctggg gacgcctctc cgttggcgcg ccgtatttta
     9361 accgcgcgac gttaccgttt ggtctgttga tgctggtggt gattgtgctg gcgacgtttg
     9421 tctctggcaa acgcgtgcag cttccggcgc tggtagctca tgcgggcgtg ctgttatttg
     9481 ccgctgggat cgtggtttcc agcgtcagcc gtcaggagat cagcctgaat ttacagccgg
     9541 gtcagcaggt gacgctggca ggatacacct tccgttttga gcgcctcgat ctgcaagcca
     9601 aaggcaatta caccagcgaa aaagcgatag tggcactgtt tgaccatcag caacgcattg
     9661 gtgaactgat gccggagcgg cgtttttacg aagtacgtcg tcagcaaatg atggaaccgt
     9721 caattcgctg gaacggcatc catgactggt atgtggtcat gggtgaaaaa accggagcgg
     9781 atcgttacgc ttttcgcttg tatgtacaaa gcggtgtgcg ctggatctgg gggggaggat
     9841 tgttgatgat tgcgggcgca ttgttaagcg gatggcgggg gaggaagcgc gatgaataaa
     9901 ggacttctca cgctactgct gttatttacc tgttttgcgc gcgctcaggt cgtagacacc
     9961 tggcaattcg ccaatccgca acaacagcaa caggcgttaa atattgccag ccagttacgt
    10021 tgtccgcagt gccagaatca aaacttactg gaatccaacg cgccggtggc agtcagtatg
    10081 cgccatcagg tttacagcat ggtggcggag gggaagaacg aagtcgaaat cattggctgg
    10141 atgaccgaac gctacggaga ttttgttcgc tataacccac cgttaacggg tcagacgctg
    10201 gtgttgtggg cgctgccagt ggtgttgtta ctgctgatgg cactgatcct ctggcgagtg
    10261 agggcgaagc gatgaaagag cccaaaatac cggtgaaaat gctgacaaca ctcacgattt
    10321 tgatggtatt tctctgtgtc ggcagttatc tgttaagtcc aaaatggcag gcggtacatg
    10381 cggaatatca gcgtcagcgc gatccgctac atcagtttgc cagccagcaa accccggaag
    10441 cgcagcttca ggcattgcag gataaaatcc gcgctaatcc acaaaacagc gaacaatggg
    10501 cgttactggg cgagtactat ctgtggcaaa acgattacag caattcgctg ctggcgtacc
    10561 gtcaggcgtt gcaactacgt ggtgagaacg ctgaactgta tgcggcgctg gcgacggtgc
    10621 tttattacca ggccagccag catatgaccg cccagactcg cgcaatgatc gacaaagccc
    10681 tcgcgctgga ctctaacgaa atcaccgctc tgatgctgct ggcttccgat gcgtttatgc
    10741 aggcgaatta cgcgcaagcc atcgaactat ggcaaaaagt gatggatctc aactcacccc
    10801 ggatcaaccg gacacagctg gtcgagtcga ttaatatggc gaaattgttg cagcggagat
    10861 cggattaatc atctggtgat gaagattatg ttattgagct gcataaaaaa taatcgaatg
    10921 aacatatgcc aaaaataatc actaatcagt attattgcag attaaacaaa taaaaatctt
    10981 tccataacaa atggttattc attaatcctg acataaactc gcgttattat gcattaatgc
    11041 agcgaaaagc tctgttgtta aagggttgcg caacataccg cgcaaatgat actgatcata
    11101 agcgttaaaa aaatctacaa accaacgcaa cacaattcat gcctggcagt atgtcacgtt
    11161 ctcgcgtttc tgaacgggga acggcgctcc attgaggaag ttattctgat gaaaaatata
    11221 aaattcagcc tggcctggca gattctgttt gctatggtgc tgggcattct cctgggaagc
    11281 tacctgcact accatagcga cagccgcgac tggctggtcg tcaatttgct ctctccggcg
    11341 ggtgatatct tcatccatct gattaaaatg attgttgtgc cgattgtgat ctccacgctg
    11401 gtggtgggta tcgcgggtgt gggtgatgcc aaacagctcg ggcgtattgg cgcgaaaacc
    11461 attatttact tcgaggtgat caccaccgtc gccatcattt tggggatcac tctggcgaac
    11521 gtcttccagc ccggtgccgg ggtggatatg tcgcagctgg cgaccgtcga tatctcgaaa
    11581 tatcagagca ctacggaagc ggtacaaagc agttcccacg gcattatggg cacgattttg
    11641 tcgctggtgc cgacgaacat tgtggcgtcg atggcgaaag gcgaaatgct gccgatcatc
    11701 ttcttctcgg tgctgtttgg tctggggctt tcctccctgc ccgcgacgca tcgtgaaccg
    11761 ctggtgaccg tgttccgctc catctctgaa accatgttta aagtgactca catggtgatg
    11821 cgttatgcac cggtgggtgt gtttgcgctg attgcggtga cggtggctaa ctttggtttc
    11881 tcttctctgt ggccactggc gaaactggtg ctgctggtgc atttcgccat tctgttcttc
    11941 gcgctggtag tgctgggaat tgtggcgcgc ctgtgcgggt taagcgtctg gatcctgatt
    12001 cgtattctga aagatgagct gattctggcg tactccactg ccagctctga aagcgtactg
    12061 ccgcgaatta ttgagaagat ggaagcctac ggagcaccgg cgtcgatcac cagcttcgtg
    12121 gtgccgaccg gttactcttt taaccttgat ggttcgacgc tgtatcaaag tattgccgct
    12181 attttcatcg ctcagctgta tggcattgac ctgtccatct ggcaggaaat cattctggtg
    12241 ctgacgctga tggtgacctc gaaggggatt gctggcgtgc cgggcgtgtc gtttgtggtg
    12301 ttgctggcaa cgctgggtag cgtaggtatt ccgctggaag gtctggcgtt tattgctggt
    12361 gttgaccgta tcctcgacat ggcgcgtact gcgctgaacg tggtgggtaa tgcgctggcg
    12421 gtgctggtga ttgccaagtg ggaacacaaa tttgaccgca aaaaggcgct ggcttatgag
    12481 cgtgaagtgc tgggcaaatt tgataaaact gcggatcaat aattgaagat tgccggggtt
    12541 atccacccgg caatgtgtgg atgcctgatg cgacgctggt gcgtcttatc aggcctacgc
    12601 cagacagcgc aatagcctga tttagcgtga ttttgtaggt cggataaggc gtttacgccg
    12661 catccgacat caacgcctga tgcgacgctt aacgcgtctt atcaggccta ccttaaccgt
    12721 tggttaattt ttcaaactct tcacacccgg tatcaaaccc ttccatacag ctcaggttca
    12781 accagtgcag cgccttttgt ttgttcttct cgataaaacc ttcttcaccg tttaagaaca
    12841 tcattcccgc ccagtactcg gaataaccgg ttcgggaaat tgcagagctg cgtttgaaat
    12901 actaggttgc cttgtcatcg tcggccttaa tacccacgcc gttggcgtaa atcaaaccaa
    12961 gcagcatttg ggcatcgacg gcagagtcgt tctccagatc ttccgaggct tttctaacag
    13021 cgaaatcgcc tttggataat ccggtttacc cgcttgagta tttaccagaa tatgcgccag
    13081 cgttacttca ccttctttac tgcccgcttg cgccgctttc tctgcaagaa cttttgcttg
    13141 tggatagtcc agactgcccg gattggtgat tttgatctgc gccaacagcg cgcaggcatc
    13201 agcatcaccg ctgtcggcgg ctttctgtgc ccaatattcg gctttgctca aatcgccgga
    13261 gctaaaccag ctgtcggcaa gaaaatattg tgcgcgtcgg tccccggcct ctgctgcctt
    13321 taaatactgg ctgccaggct cggagtcgtt ggcgtgggca aagaatgtca aaaacaacat
    13381 caatgcgata atttttttca ttttgataat acgattgggt agggagtaac cagtataaag
    13441 agttcgaatg gataaaaaaa cagcctccga aaggaggctg tagaaaggac tgtattacgc
    13501 cagtgccgct tcgcgcaggc gagttttcaa cttgttgtac tcgtcaatca cgtactgctc
    13561 ggcggcgcgc tgatcggcga tcggctcgac gcgcacggcg cagtatttgt attccggcgt
    13621 tttcgtaatc gggcttaagt tttcggtaac cagctcgtta caggaaccaa tccaccactg
    13681 gtaggtcatg taaatcgccc ctttgttcgg acgatcgctg acctgcgcac gggtgataat
    13741 tttgccttta cgcgagtgca cccaaaccaa tgcctcatct tcaataccca gacgtttggc
    13801 gtcttcggta ttgatttgtg cgtagccagg ttcatcagcc agcgccgcca gtgccgcaca
    13861 gttaccggtc atcgaacggc aagagtagtg accaacttca cgcaccgttg acagtaccat
    13921 cgggtactcg tcggtgagtt tgtcgattgg cgctacccag tcgcaggtga agaactgcgc
    13981 cagaccgttc ggggtatcaa acttctcttt aaacagataa gaagtcccct gatcggcatc
    14041 tgaagtatcg cggcaaggcc actgaatgaa gccctgttcg cccattttct cgtaagtcgc
    14101 accgtagaaa tccgggcaca gatgacgcaa ctcatcccag atctcctggg tgttgttgta
    14161 gtgcatcgga taacccatac gggtggcgat ttcactgatg atttgccagt ccgttttcag
    14221 atcccatttc ggttcaactg ctttgaagaa acgctggaag ccacggtcag ccgcagtaaa
    14281 cacgccttca tgctcgcccc acgacgttga cggcaaaatg acatccgccg ccgacgcggt
    14341 tttggtcata aagatgtcct gaacgatgac cagttccaga tcttcaaagg ctttacgtac
    14401 tgccgacagc tccgcatcag tttgcagcgg atcttcgccc ataatgtacg cggcacgcac
    14461 ttcgccatgc gctgcgcggt gcggcagctc gctgatgcga tagccggtat gagcaggcag
    14521 gctttccacg ccccaggctt tggcgaattt ctcgcggtta gccggatctt tcacgtactg
    14581 gtatcccgga tacgtatccg gcagcgcgcc catatcgcag gcaccctgca cgttgttctg
    14641 accacgaacc gggtttacac ccgcatgcgg cttaccgagg ttaccggtca gcatcgcgag
    14701 gctggtcaga gaacgcacgg tttccacgcc ctggtagaac tgggttacac ccatgcccca
    14761 caggatggcg gcgcttttcg cctgggcata catccgtgcc gcctgacgaa tctcactggc
    14821 gctgacgccg gtgatatctt caaccgactc cggcgtgtag ccttcaacga ttttacgata
    14881 ctcttcaaag ccttctgtac gggaagcgac gaacgctttg tcgtacagat tttcttcaat
    14941 aatgacatgg cccatcgcat tcaacagcgc gatgttcgag ccgtttttca gtgcaatgtg
    15001 catgtcagca atgcgcgcgg tttcaatttt gcgcggatcg cagacgataa ttttcgcccc
    15061 gttacgttta gcgttaatta cgtgattcgc catgattggg tgggaatccg ccgggttgta
    15121 cccgaaaacg aacactaaat cggtattatc aatttcgtta atagcattgc tcattgcgcc
    15181 attaccgacc gattggtgca gacctgcaac cgatgggccg tgtcagacac gagcgcagca
    15241 gtcaacgtta ttggtaccaa taacggcgcg cgcaaatttt tgcattacat agttggtttc
    15301 gttacccgta ccacgcgagg agccggtcgt ctggatggca tccggaccgt acttctcttt
    15361 gatggcgctc aggcgctcgg caacgtaatt cagtgcctca tcccaggaaa caggttcgag
    15421 tttgccgcca cgctggcgac ggatcatggg ggttttcagg cgcggggtca ggatctgggt
    15481 atcgttaatg aagtcccagc cataataacc cttcagacac agggtaccct ggttggtttt
    15541 cccctgcgct gcctccgccc ggacgatttt gccgttatcg acgaccaggt tgattttgca
    15601 acctgatgcg caataggggc aaaccgtgac gacttttttc atcggtctcg ctccagttaa
    15661 tcaaatcacg catacgcgct ctcgactaca gtatgcatct tttatgccac attttatttg
    15721 gggtcattcc ctgatattac gggcactatt tattcaaaac tctgacgaaa aacaggctgt
    15781 cgtcagtttt gacgtgacga aacgaaatac cgcgtgacag ccatcacgcg gcagacattt
    15841 tattttttct cgacgacggg agccgcctga tacccgccgc ccagcgattt catcaactga
    15901 atgctgtgga tcacccggcg gctgtccagc atcagtaatg acatctcttc ggcaagcact
    15961 ggcaaccggg cttcggtggc ctgtaagcgg ctggttaagc cgcgctgata ggcggcctcg
    16021 gcagcgcgct gggtgaagcg cgttgcttcc acgcgttcag cctgcatttc tcgttcgtcg
    16081 ttgagcgttt gcagacgcgt gccgttgacg gcaacgtcac gcaccgcgtt cagtactgac
    16141 tggttgtaac gttcaatcat catgttgctg gcggcgcgag tgccttcgag attggcattc
    16201 aaccgtccac cgtcaaacag cggcaatttc agacccggga tgaagttgaa ctggcgactg
    16261 gtttttttga ataaggtatc caggtggatg gagtccagac cgaaaaacgc tttgatatca
    16321 aagctcgggt agaacagtgc ccgcgcggaa tccacctgat ctaatgacgc ctgaacatac
    16381 cagcgcatgg cttgcagatc cgggcgtctg gcgagcaact cataagagag tgtcgccgga
    16441 atgccggtct ggactcgtgg taatgccacc ggtttgatct ccggcatatc gctggccccc
    16501 gcgccaatca atgcacgcag agattctcgc gtttcggtga tttgcccttt gacggcagca
    16561 atttgtttat cgaccgccag aatctgtgcc cgcgcgccgt ggaaaggcac ttgtgcttcc
    16621 agaccgtgcg ccactttact ctggtgcgct ttcaccgcgt aatcaatcat atcgcgagtt
    16681 tgttctaaca gatcgagcat ctgatagctg gcctgcatac tgtaataaag ctgcgctacg
    16741 cccgtggtca gcgatagctc tactgctgcg gtttctgcca gcgcggcatt atgcgcgcca
    16801 atggcggcgg caaccgctga gcgatgcaca ccccacaaat caagatccag tccggcaaac
    16861 aaacctactg tggcttccgt atagtacggc ccgtccatac ccagtgaggg cgcatccatc
    16921 gcataagggc ttaaaaagcc gttcgccgag acgcgttggc ggttgagcat ccctaacgct
    16981 gcgacctgta attgtgaacc ggcatctaac aaatcggcct gggactgcgc tttttcttcc
    17041 cgcagtttcg cttcggcgag ggtgtgtgaa ccacttagcg tccgttggat cagcgcatcc
    17101 agctgcgggt cattgagttg tttccaccac tgcgcctgcg gccagccgga gctggcaaga
    17161 tgaatatcgt cggccagttt gatttgttcc ggtttgagct gttgatgagg tgcagaatcc
    17221 ttacgtacca gggcacagcc ggaaatcagc gtcgtgctgc cgagaatgct gcacaacagc
    17281 agacgtgaaa gttgacgatt gatcattgcg tggctccttg tgcctgttcc gtggcgggcg
    17341 ttaatgccgg ggctgtccag tctggcaagc gggcgaaaag ctggcagacg tgttgctcct
    17401 gttttaataa ggtgggcagg atggcctgcg aggcgggtgt ctcttcaagc gttatttgag
    17461 gagaacagct gagtgcggtt gccagaccgg cagcgtattt ttccagggcg tcggcaaact
    17521 gacctgctct gtccggctgt agtgcgttat ccagcgcctg cgccgagttc caggtggcat
    17581 cccaggcgtg aagaagatcg cggccctgac gaataaccgt ttgcgaacgt tcaatcagta
    17641 aggcgcgttc ttcgctgtcc agttgacgct ccagcgccac gcgttggcac atctcttcac
    17701 aggcattaaa cgccgcatgc agacctatac gaatttgcag ataagtgcgc agagccgtga
    17761 cttcctgctg gcgtgggatc cgcattactt tacttagcat acccagcgca ccggctagtt
    17821 tttgcggcag agtgcgcgct tcactttcag gccagacaaa ggtgtaaatc accgcggaca
    17881 ccacggtacc aatgatgata cccagggcgc gatcgcgaat ttccaccagg tcgtacactg
    17941 ggccaaaaac gttttcgagc gtggcgagcg cgaaggtgac gaccatctgt gtgccgatat
    18001 aagaagagcg ttcagagctg gtggcaatcc atgcgcccaa caggaaaatc ggtgccagca
    18061 caaacagcaa ttcgacaata ttgtccagcc agggcatgac cagtagcgtg aataacagcg
    18121 ccagaatcgc gccgcaaaag gccccgccaa aacgcagcac catcttctgg tacgacgaac
    18181 cgacatttgg attagcgacg atcacgcagg tcagcataca ggtgtgaatg ccttcccagt
    18241 ccacgccgct gtaaaaggtg taacagatca aacaggcgag caatgttttt accgcgtagc
    18301 gtatatagtc tggattggta aaagcatcgg cgaccattga tggcggtttg gcggcgggcg
    18361 ttggcggcgt attcgggttc atctggccca gttgtaacaa cgtctggcag atattctcca
    18421 ggttacattc ccgtgccgcc accgcttcac tttcactgat ccgccagtcg ctttgccagc
    18481 actgaccttc agcaacggca tgctgcagct tgttgatttc tgaggctaat ttttgccgaa
    18541 attcaataat tgcctgagaa tcagcaaaag aggtgggatc gtagcgattc agcgtcgagt
    18601 aaatgtaggt taccgttgcc acgcagcttt gccaccatgc gctttgagtt cgccagttgg
    18661 catcgtccgc gagacaaaag acattcagtt tttgcagcgc cagcgcctct ctttcaatcc
    18721 gcgtttcggg tagcggtgcg aggctgtctg tcaggtgact aatggcatca tcaagccgat
    18781 cattaagcgc ctgatgcatt tgcgaaatgg cacgactggg aaaccacagc acgccgatta
    18841 acgtcatcag caaggttgga tagaggccaa caacgataca ccacagcgtt aagcgcacga
    18901 ccacttccgg atagtcgagc atggcgggga aggtttgccc gtaaatggcg acaatggcga
    18961 cagcgaaaaa gaccagtccc agccgatggg tgcgcatcaa aaacatgcag cccatcagga
    19021 tcggcccggc gatgatcaat cggatcaacg gttcgccgta tgaccatttg tagatcaaaa
    19081 acaggctgcc gatctccagc accgtggcaa ccacaaacaa gatcgccaca aatttggtgt
    19141 aaaacgcgtt cgactgaata ccgtaaaaca gcactgccag cgataacgcc acaaaaggga
    19201 tctcaaaagt catcgagatc agaatcacca gcaggcagcc tacccagagt tgcacgatct
    19261 gcggcacgcg gccgggtcgc cgctcgctta actcttcatg aaagaacgcc agcagcctga
    19321 ccaccggtaa tggcagggag ttgagcgcgc tcattattgc ggctcaagat tagcgactgc
    19381 cgaagcgccg atgcggaaca tttccgggtc aggtttatcg accatgattt tgaccggaaa
    19441 acgctgggca acgcggaccc agttaataga gcgagaaact ttcggcaggc cgcccagcac
    19501 caggccgccg tcattcggta gcacaccgta gccaatcgaa tccactttac cctcgaaggt
    19561 tttgccgctg tcactcatca ggcgaatcgt tgcgggtgta cctgagcgaa tatttttcag
    19621 atcggtttcg cggaagttgg cgatcacgta ccagtgacga gtgtcgatta gggtaaaaat
    19681 agggcgcatg gcagaagcaa attgcccgac ggaggttttg agggaaatga cccggccatc
    19741 aaacggcgcg cgaacggtcg ccatttccag atgcagtttg gtcagggcaa tatccgcttc
    19801 gaccgccgca cgctgggcaa ctaatacatc cacgccgctg acggcgctgg cggctgactg
    19861 cgcctgtaac aatacggcat taagatccgc ttctgcggcg cgctgcgccg ttcttgcacg
    19921 gtcaacatct tccgctgaga caaaaccttc tttcagtaat ggctcggtgc ggcgtaatgt
    19981 atctgtggcc tgtttcgcgg cggcacgtgc tttttctacc gtggcattaa ccgagtcggc
    20041 accaaactgt tgggcgtcaa cgctacgctg ggtgagcata atttgcttat ccagcgccgc
    20101 gagggaggct tcagctttcg ccagattggc ttcgtacggg cgcgggtcaa tgcggaacag
    20161 caaatcgccc tgtttgactg cctggttgtc ggtgaccgcc agttctacaa tgcggccgct
    20221 gacttccggc accacatcaa tggtatctgc tgacgcgtaa gcgtcattag ttgatggcgc
    20281 actgtctacg cgccagataa cgaaaacaag ggcaaccagc gccaacgcaa ccactaacag
    20341 agcagggaat ttactgcgag gagctttttt cggcgtactt tccatgagcg cgtctcaaat
    20401 agattagaaa aatgccagcc agaacagcat ggcgtagaca gcaaaaaggg cggtataaat
    20461 aattccgaca aatgccagat tgatatttgc ccgctgaata attcgcctcg tgattagcgt
    20521 caaaataagg ctggcaatgg cgcagaaaaa ccagctggga taataagcgc cgatcaccgg
    20581 gattgccgga gataatgagc atcccgaaac catgaagacg ggaattatcc aggctgtttt
    20641 tttgagttgc atcgccatgc gagagagaac tgttggcata ttaaatacat cctgtttgct
    20701 gcgaacaata tctgtagtga atatcaatat ccattgaagg cgtcagtatg gctattttct
    20761 tgatgaataa aaatagcttt attcagccac cgcattcata acttatatat tttatgtgtt
    20821 aattgattgt atgtattttt ataataaatg cttttggggg cttaagcgcc cccaaaagtg
    20881 agtggcatta atttggggtt acgatattca cccacaaatc gaaattatcc agacaggcaa
    20941 taatttcttc cagtttcgcg ccattgccaa taattttggc tttcttcgct tttaccagat
    21001 ccgccatttt ggcttgtcct gtcagcacgg cgtgcagatc ttcacggctg atgtagaaag
    21061 aggcgtcggc ttgcggttgc agtgttttac ggtagttaag cacgctatcg ttcagcgtca
    21121 ggttgaggtt atcgccgttg ctcatattga agttcaggct gatattttta cccgcagctt
    21181 tcgcgctatc gaggcgaacg gacataaagt cgaacagcat ttcgaccgac atcccgcgaa
    21241 tggtgtccgg ggaaccggtg gtgccgtggc tgaacttatg caccccttcg cgcagctctt
    21301 tcgcgccggt caggtagaaa ccgcgccagg tggcggactc ggcctgatag cccagctgtt
    21361 caaagttatt cgcttgcaga ttcttcgcga cctggtcacc cgggttggcg gcaatcacct
    21421 gtttcagcag ttctgccgac cagcggtaat caccttgctt gttcgcttct tgcgccaggc
    21481 tgatgacacg ggcagaaccg cccagcgcct gcacgtaacg tttacccatc tccacctgac
    21541 catacggatg caggttagcc gggttaccgt cgtaatagcc aagatagaag ttatacaccg
    21601 cgcgggcgtt gtggctgaca gaaccgtaat agccacggct ggcccagtta ttggcaagtg
    21661 caggcggcag tttaatcatg tcgccgattt cattcatggt gtagccctgg ttcgccaggt
    21721 gcagggtctg gtcgtgaatg tacttgatag tatcgcgata tttaccaata taatcattga
    21781 tatgcttatt gccccggacc ggccaggtgt gcggcataaa caggacttcc gcgtcgttac
    21841 cccacatatc cagcgtttcg ttcagatact cggtccactt gctggtgtcg cgggttttcg
    21901 cgccgcgcag agtgtagaag ttgtgcaggg tatgcgtggc gttctcggcg gtacacagcg
    21961 ctttcagggc cggaatatag aagtgcattt cggctggtgc ttcgctacct ggggtcatca
    22021 ggaagtcaaa ctccaggccg tcgataatca tcttctcacc ggttttggtg atggttttgt
    22081 tcggtgcgat gatgctcggg tagcccgatg ccagcgttac gccaagacca ttgccgatgt
    22141 taccctgagg gttatgcgcc agcagcaggc cgtaggagta aagtgcacgg tggctcataa
    22201 tattacccgc cagtacgttt tcgctgatgg cttcgtccat aaagccagca ggggcgataa
    22261 cctgcacttt accggatttc acatcagctt cagagataat gcctttcacg ccgccatagt
    22321 ggtcggtatg gctgtgggta taaataaccg caacaatcgg tttttgcggg cgattttgga
    22381 agtaaaggtc aagggcggct tttgcgctcg gtggcgtcac cagcgggtcg atgacaataa
    22441 tcccggtatc accttcgata aaggtgatgt tggagatatc ctgaccgcga acctggtaca
    22501 ttctgtcggt gactttaaac aggccggaaa taccgtttaa ctgcgactga cgccacaggc
    22561 tagggttaac ggtttcgggc gcgggcgcat tgatatcaaa tttataatct tccccgcgat
    22621 aatatggttt gccattagca tcgcgcagaa taccttcatc cagcagcgga gcgataaatc
    22681 cacgctgagc gtcgtcaaaa tcctgacgat cgctaaacgg taatgatttg gcgtaattct
    22741 gattaacctg ttgggtatat tgagtggcgg ctttcgcttc ctctttcgcg ttagcggtat
    22801 ttaccatcat gccgctggcg gcagttaacg caataacaat tctgctcaaa cggaataacc
    22861 gagagttatt catataaatc tccatttatc atttatgtcg taaatatgta atccatacaa
    22921 aatacgtcat ttaaagctgg ggttatcata attgggaatt tgcgacttta ataagtggaa
    22981 gtgtgagctg aacgatccat tttattaggc atttgtgctg aagagagaaa attacgcgaa
    23041 tttattatct ctgtaaataa tatgaggtgt tttatatatt tattatatat attgtacttc
    23101 ggcaaatact gagcacaatt tatcaatgca accggtgttt ctttttaaaa aacgtaccgg
    23161 agcaatgggc ggtcatgtcg ctggcaccgc aggattctgc gttgctgtgc cagcctttta
    23221 ttcatggtca atgagtgagg tgattgataa agacaccagg tcgtcagagc gcactgatta
    23281 tccgcattat gccagtgaag ttgcactggc ttttggttca cgagtggttg gcctcgaact
    23341 ggcaaaaatg attgtggatg cgtggctggg cgcacagtac gaaggcggtc gtcatcaaca
    23401 acgcgtggag gcgattacgg caatagagca gcggagaaat tgagattcat ccactacttg
    23461 catggatgag taatgattaa tgtggataga gtttcttttt gaggttggct aatgaaacgc
    23521 tttccgctat ttcttttatt caccctgctc acgctgtcca ccgttccggc ccaggccgat
    23581 attatcgacg acaccattgg caatattcag caggcgatta acgacgctta taaccctgac
    23641 cgtgggcgag actatgaaga ttcgcgcgac gacggctggc agcgtgaagt gagcgacgat
    23701 cggcgcagac aatatgacga ccgccgccgc cagtttgaag atcgccgcag gcagctggac
    23761 gatcgccagc gccagcttga tcaggagcgt cggcagctag aagatgaaga gcggagaatg
    23821 gaagatgagt atgggcgatg aggttgggta tggagcaggc atcgcccctc accccaatgg
    23881 ggagagggag aaaaccagcg caatattcaa tatcgagcac aatcggtccc ctcgcccctc
    23941 tggggagagg gttagggtga gggggccagc gcgcacattc cctctcatca cgccacccca
    24001 atctccatcc catcaaatcc cgcctcaaac cccgacggca gtgcgttttc catcagccac
    24061 gcatcaaact ggtggctgat atgggtcaga atcacccgtg gcgagcggat aacctgattc
    24121 agcgccagca cggtgtttaa atcacagtga ctacgtggcg catcctcgcg cggcgggtgg
    24181 ctgcaatcaa tcaccattac ctgcggctga ttattgcgta aaaatttcag cgttttttcc
    24241 ggcaagcctg cggtgtcaga cagccacgcc acccggctgt gtgccgtttc cagcagataa
    24301 ccgaaggtca gttttgagtg gttgagcggc aggggcgtga cctgtaaccc ctgcaaatca
    24361 aacaccacaa acggttccac cgtgtggctg aaatcaagca ggcccggatg tttaaacaga
    24421 tcgtcgcagc cctgttcatc cggcgggccg taaaccggga tcggatcgcc cacgccccag
    24481 cgcagcggga atagcccctg cacgtgatcc atatggtagt gcgtcagcaa aaactgctgg
    24541 aacgatccgg gcggccagcg atcggcgaga tcgtgcagcc cggcgtcgat cagggtgatt
    24601 gcgtcgttaa acttcactac gccgctgcat ggctggcggc gatactgcgg tgagcgccgc
    24661 gctctggcgc aggctacgca ctcgcagccc catgccggaa cgccctgtgc gccgccggtg
    24721 ccggtgagcg tgagggtcag gctcatgtta cagcgccttg gtgaagcgga agtggctctg
    24781 ctcgtagcct tcacgcaggt aaaaacggtg cgcgtcgtgg cgcttcacgt tggtggaaag
    24841 ttcggtcatt tcggccccgg cctggcgggc ttcttcttct gcccacgcca gtaacttact
    24901 gccgacgttc agaccgcacg cctgcggcat caccaccagt tcctgaattt cgccgatcca
    24961 gttgacatga tgcagatgaa actgcaaatg caggccgatc atgccgacaa cttcgccatc
    25021 cagcagcgcc agatggtagc gcatgctcgg gtagcgcatg ctcgggtcgc gcaggttggc
    25081 gttaaagccc acgcgaaacg cgtggtggtc aaactccgcc tgttttagct cacaaatcag
    25141 cgcgtaaacc gcgtcggtat cgtactgcgt ggccgggcga agctcacaag caggcatggt
    25201 gtttctcctt ctgatgaatc agcgtcagca gtgtgtcgac cgactggcgc aggctgccgt
    25261 cattgttgag cgtatggcaa tcctgtggag tatagcgggc ggcgcgcgcc agccgggcgt
    25321 taatttcact ggtgttttca cggccacggt ttttcaggcg ctggcgcagg atctccggcg
    25381 aaacctgtaa acagacgggc agcagcgccg attgatagcg cgcccgtgcc tgcggcaaat
    25441 gcgcgcgtga accgttgacg actacgtcga atccagcgtg cagccagagg tcaatctcga
    25501 tgccgacgcc ataatacaga ccgttagcgt gccagcttaa ggccagcagg ttttgccccg
    25561 cgcgggtaaa aaactcccgc tcactcaggg cgatatggtt ttcacttccg gcgctggcgt
    25621 cgcgcgtgat gtagcgatgc gccaccagta actgcgtttg ttcccgcagg cggagttccg
    25681 ccagcaggct gtctttcccg gagccggacg gccccattaa ccaaatcagt tttcccatca
    25741 tcagaacacc cttttaccct gacgccagac gtggtcgata tgaatgtgat tgccctggcg
    25801 atgcgccagc accaggtcag cgcgtttacc ctcgccaatc accccgcgat cctgaagatt
    25861 cagcgcctgc gccggatttt tggtcaccag cctcaccgcc tgcggtagcg taaagcggtt
    25921 gctctcgtca tcggcgacgc ggaacgccgc atccagcagg ctggcggggt agtagtcgga
    25981 agagaggata tccagcagac caagctgcgc cagttcactg gccgccacat tgccggagtg
    26041 cgagccgcca cgcacgatat ttggcgcacc catcagcacg ttcatgccat gcttacgcga
    26101 ggcttccgcc gcttcgaacg tggtggtaaa ttcggcgatc acgctgccaa gttggtggga
    26161 ttcggcaacg tgggcgtgcg tggcgtcatc gtggctggcg agcgcaattt gtcgcgcgcg
    26221 gcacagggcg gcgatggatt cgcgattcgg ctgcgaccag cgtgcggcga gcgccaattg
    26281 ctcttcttcg tactgctgca tctgcgcatc ggtgagggag tatttgccct gataatattc
    26341 gcgatacttc tcgcggttag cgaactggcg ctggcccggt gagtggtcca ttagcgacac
    26401 cagcgtcacc ggttcgcgct gaaccagttt ttcaaacagc ggcagtgtgg tgtgatgcgg
    26461 cagctcgcag cgcaggtgca gacggtgctc ggcgcggttg acgccgcgtt tctgcgtctc
    26521 ttcgatggtg ttgatcatct tctccagatt ctccagctga tcgccgccgt cgcgcacgtc
    26581 gccaatcgcc accgcgttca gcacggtggt gatgccgctt gccaccatca gcgcgtcgtg
    26641 gctgctcatc gccgaatggg cgggccagtc gactttcggg cgcggggtga agaatttatc
    26701 gaggttgtcg gtatgcagct caatcaggcc gggtagtagc cagccacctt cgccgtccat
    26761 cgcttctggc aggcggctct ggctttcggc aaaggcgcgg atttcgccat cctgcacctc
    26821 cagcgaaccg tgcaccacct cgttttccag caccagctta acgttattga taatcatgaa
    26881 gaggctccca ttgggtgcag gcggtcggcg acgtcattac gtacagcttc gtcatggaag
    26941 atgccgacga tggctgcgcc acgggctttg gcttcgtgaa tcagttccac caccgcggcg
    27001 ctgtttttgg cgtccagcga ggcggtaggt tcgtcgagca gcagaatggg gtagtcgacg
    27061 ataaagccgc gggcgatgtt gacgcgctgc tgttcgccgc cggagaaggt cgatggtgcc
    27121 aggtgccaca ggcgttccgg cacgttcagg cgggtgagaa gacgcgcggc tttagcggcg
    27181 caggcttcac gcggaacgcc ggtatcgagc agcggctgca tcaccacttc cagtgctgag
    27241 atacgcggga tgacgcgcag aaactggctc acccagccga ctgtggtttt gcggatttcc
    27301 accactttgc gcgctggcgc ggtgaccagg tctacccact cgtcaccgtg tttgatctgg
    27361 atttgacctt cgtcgggtag atagttggcg tacagcgagc gcagcagggt tgatttgccg
    27421 ctgccggagt gaccgtggag caccacgcat tcgcctgcgt tgacggtgag cgaggcacgt
    27481 tgtaagacgg gcaggcgtac gccgttttgc tgatgcagga tgaaggtttt actgacgttt
    27541 tgtacgttaa tcatttttcg cctcgtggtt cgggtgtcgg atgcgacgct gacgcgtctt
    27601 atccgaccta cggggagcgc atttgtaggc cggataaggc gtttacgccg catccggcac
    27661 cggctcaatt ctgcaaaacc gatgacacca gcagttgtgt atacggatgg tgcgggtcgt
    27721 cgagcacgcg gtcggttaac ccactctcca ccacttgccc ctgcttcatc accagcaaac
    27781 ggtccgccag caggcgggcg acgcctaaat cgtgggtgac aatcactacc gcgaggttca
    27841 gctccaccac caggccgcgc agcaggtcga gcaggcgtgc ctgtaccgac acatccagtc
    27901 cgccggtcgg ctcgtccata aacaccagct tcggatgcgt caccaggttg cgggcgatct
    27961 gcaaacgttg ctgcatgccg ccggaaaagg tggtcggcag gtcgtcgatc cggttggcgg
    28021 gaatttccac ctcttccagc cacttctgcg cggtggcacg aatatcgccg taatgacgtg
    28081 ccccggtcgc catcagccgc tcgccgatat tgccgcctgc cgacacctgg cggcgcaggc
    28141 cgtcgagcgg atgctgatgc actacgcccc attcggtgcg cagcaggcga cggcggtcgg
    28201 cctcgctcat tgcgtacagc gaacggctct catagtgaat ctccccctgc tgcggcgtca
    28261 ggcgcgcgga gattgatttc agcagcgtgg tctttccgga gccggactcc ccgacaatgc
    28321 ccagcacttc ccccggccat aaatcaaaag agacatcgct aaagcctttg cccggcgcgt
    28381 aaaggtgggt caggttattg accgaaagta acggttgatt cattggtttt ttgcctcgct
    28441 ctgttggcgg caataatcgg tatcggagca gacaaacatg cggtttccgg cgtcatccag
    28501 caccacttca tcaagatagc tgtgggtcga tccgcagatg gcgcatggct catcccactg
    28561 ctgaacggtg aacgggtgat cgtcgaaatc gagactttcc acgcgggtaa acggcggcac
    28621 cgcatagatg cgcttctcgc gccccgcgcc gaacagttgc agggcgggca tcatgtccat
    28681 ttttgggtta tcgaatttcg ggatcggcga cgggtccatc acgtagcgcc cgttcacctt
    28741 caccggatag gcgtaggtag tggcgatatg accgaagcgg gcgatatctt catacagttt
    28801 cacctgcatc acgccgtact cttccagcgc gtgcatggtg cgggtttccg tttcgcgcgg
    28861 ctcgataaag cgcagcggtt cggggatcgg cacctggaag ataatgatct gatcttcggt
    28921 cagcggcgtt tcggggatgc gatggcgcgt ctggataagc gtcgcatcgt ccgtacgttc
    28981 agtggtgttt accccggtca cgcgcttaaa gaagttgcga atcgacacgg cgttggtggt
    29041 gtcgtctgcg ccctggtcaa tcaccttcag cacgtcgctt tcgccaatca cgctggcggt
    29101 gagctgaatg ccgccggttc cccagccgta gggcatcggc atctcgcgcc cgccaaacgg
    29161 cacctgataa ccggggatcg ccaccgcttt taagatggcg cggcggatca tgcgtttggt
    29221 ctgctcgtcg aggtaggcaa agttgtagcc gctcagatta gccatggttc tgctcctgtt
    29281 gcagacgttt gagtagctcc agttcggcct ggaaatcgac gtagtggggg agtttgaggt
    29341 gcgagacaaa gcctgcggct tcgacgttgt cggcatgtgc cagcacgaac tcttcatcct
    29401 gcgccgggcc tgtcgcgtgc tcgccgtact ccggagcctg caacgcacgg tcaaccagcg
    29461 ccatcgcttt gcgctcgctc atgccgaaca ccagcccgta gccgcgcgtg aagtgcggcg
    29521 gctcatccgg cgggtcaata aaaccgttga ccatttcaca ctcggtcatc agcagttcgc
    29581 cgacgttcac cgcaaatccc agctcttccg gcataatcga cacgtcgatg taaccactgc
    29641 ggatttcgcc cgcgaacggg tgattgcgtc cgtaaccgcg ctgggtagag taggccagcg
    29701 ccagcaaata gccttcgtcg ccgcgcatca actgctgcaa acgggaagaa cgtgaacagg
    29761 ggtaaactgg cggagtgcgg gtgatgtcat ccggctgtgc gccgctatcc tcttcaaact
    29821 tcgccagccc ctgacgcgcc agcaggctga aaacgtgcgg cgacggggat tgttcgctgt
    29881 ctgcggtggt cagcgtcggc gcttcgccgt ttgccagcag ggtgaaatcg agcaggcgat
    29941 gggtgtagtc gtaggttggg ccaagcaact gaccgccggg aatatcttta taaaccgctg
    30001 aaatacgccg ttcgagacgc atctccgtgg tgtcgagcgg ctcgcttacc gccagcttcg
    30061 ccagcgtggt gcggtaggcg cgtagcagga aaatcgcttc gacgttatcg ccgctggcct
    30121 gtttcagcgc cagcgccgcc agttcgcggt cggcaatgcc gccttcggtc atcacgcgat
    30181 ctactgcaag attaagctgc tgttcaatct gggcgacgct cagttcaggc aaatcggtat
    30241 tgccccggcg tcggctctct tgcagggcgt gggcggcgtc gatctccttc tcgccccctt
    30301 tcacggcaac gtacatcagc acacctccac atgagtggtt cgcgggatag ccagcagccg
    30361 ctcgccgcag gtcaggatca ggtcgatgcc gagcgggaac gggtgcgggc gctcggtgag
    30421 ttcgtgcaga atgcactccg gcagctgcgg agcgatcatt cgttcttcgg caatacccgc
    30481 gccagtaagg cgcagcatgc gcccgccgct caggctgacg acctgtaaaa tcagcgtcgc
    30541 gcccgcttcc ggcgcaacag cggtgccgct ggaaagagcg ttgagctgtt cgctggaaat
    30601 cgcctcatcc gttaccgcga aggtcgccag ttccgactga ttgaccagcg gcgcgttggt
    30661 atgaaaacgc aggctctggc tgacgatatc gttacttaat ggcgcggaaa gccacaccgg
    30721 cgtgtcgtta tcagccagcg tcagcagcac gctggtggtg gcgatattca gcggctgcca
    30781 gccgcgtttg agctgatgca gggcgacaat cacgcccggc tcgctcatgg cctttaacag
    30841 gcgacgaaaa ctgtgctggg catcctgcac aggaagcata aaagcggttt ccagggtcat
    30901 gcgttgtctc cgcgaaccat cgtaaagaag tcgacccggc tggcgttcac ttcggcctgg
    30961 cgtgcggcaa tgcgtgccat acggtcagcg tccagtgggg caataagggt ttctgataag
    31021 ttttgaaaat ggcgagattg ctgcatcaac gcgtcaatca gcgcgcagcg ttcggcgtgc
    31081 tgtttgtcgc gccccagcac ccagctgtag ccgagggggc cgtcagtcag gcgtacggcg
    31141 gcgcgggtca gcgtggcgtc gccggcaaaa aagcgttcgc cggtaccgcc cattcgcggc
    31201 tgaatctgta ccaggccggt ttcggcggtg cggatcactt catagttggc ggtgatgttc
    31261 agcgcgttca ggcgggctgc cagttcagcc ggttggctgt gcgccagcat ggacatccag
    31321 tgctggcggg tcgcgatatc tgcgtgcatt cagtgctcca tagtgaattc aatcatgtcg
    31381 gcgcgcgtca ggctgacgga gtactccgcc gggctgcttt caccgtcacg gtggttaagg
    31441 gtgcgcacgc acagcagcgg cgacatattc gggatttcaa gacgctggca ctctttggcc
    31501 tgggcgcggc gggcgctgat ccgcgtctgg ctgcggcgca gcgcaatccc ggtttgctcg
    31561 cgcagaaaat cgtgcagcga gccgctgtcg aagcgttgca gcgtcggcca aagggtgagg
    31621 tccgcaaagt agtggtcgat taaacagagc gcgatgccgt tgacccggcg cagggtgcgc
    31681 aggtggatga cgttctcccc ctcggttatc cccagcgcgt cagcgacgtg accagatgcc
    31741 gggcgcagca ccgacagcag tttttcgctg gtgggatggc tgccctgatc cagcaggttc
    31801 tggctaaaac gcgcctgggc gttgagcggg taatcgaacg ggcgcatcag caccagcacg
    31861 ccgacgccct gacggcgctg tacccagcct ttttccacca gttggtcgat ggcgcggcgc
    31921 agggtgtggc gatttacctc aaagcgcgcc gccagctgct gctcggcggg aagatagtcg
    31981 ccgcagcgat agtgttgacg aagctcctgc tcaagttttg cggctatctc ctgatagcgt
    32041 gttgggtagc tggtcggatg tgtagacaag tgcatagata tcaatgcctc gcttatcaga
    32101 taaagtgctt acgcaaccgt tgagagagga aatccagcag gctgaccgtg acgatgataa
    32161 gcaccatcag ggcgcaggtt tgttggaact gaaaaccgcg aatcgcttcc cacagggtga
    32221 cgccgatccc gcctgcaccg accatgccga cgacggtcgc cgagcggacg ttggattcga
    32281 agcgatagag ggagtaggag atcagcagcg gcattacctg tggcagcacg ccgtaaagga
    32341 tctcttccag cttgttggcg ccggtggcgc gaatgccttc taccgggccg ggttcgatcg
    32401 cttccaccgc ttcggaaagc agcttggaga gcacgccggt ggtgtggata aatagcgcca
    32461 gcacgccagc gaacgggccg agaccgacgg cgaccacgaa cagcatggcg aagaccattt
    32521 cgttaatggc gcggcaggca tccatcaggc ggcgaacggg ctggtaaacc caccacggca
    32581 ccaggttttc ggcgctcatc agaccgaagg ggatggagag aaccactgcc agcgcggtgc
    32641 cccagacggc gatttgcagc gtgacggcca tttcggtgag gtaatcctgc cactggctga
    32701 aatcgggcgg gaagaagtcg gcaacgaagg ttgccatgtt gccgccgtct ttaatcagcg
    32761 taagcggggc catttccgcg ccctgccacg agacgaccag cacggcgaga acaacggccc
    32821 agctcagaag cgagaaccag ctacgcttgg gtggggcgat ggtgatggtt tgcatgtttg
    32881 gctccgttta atgttttctc cctctccctg tgggagaggg ccgggatgag ggcatcagcg
    32941 tgcgcatttc cccctcaccc taaccctctc cctcaaggga gaggggaccg atcgagcaca
    33001 ttactgcacc gctttactca ccgaactcat cgcgcttaac gcgttgttca ggcggtccaa
    33061 gtcatccagc tgcgcctgaa tctcggtggt tttcgccagc ttgtcctgct cattcagtcc
    33121 tttattgctt tttacgccct gcatctcttt aaacagtgcg agctggcgaa tcggcaccag
    33181 ttgcaggtcg ctggaggcgc ggaacggggc ccagcccagg cgttccagca ccgctttctc
    33241 ttccggcgtt tttccgtagt tcataaagaa gtcgtagatc ttgtctttgg tggtttcgga
    33301 gagattcttg cgccagacga tcggatcgcc tgggatcagc ggcgacttcc agatcacctt
    33361 cagttctttc agcttctctg gcgcggaggt tttcagcttg tcgaggtttt cggtgttgtt
    33421 ggtggcaaca tccacctgct tgttggcgac ggccagcgcg ttggtttcat gcccagcgtt
    33481 gacggtgcgc ttaaagtcgc tggcggagat attgtttttg gcaaagacgt agtaaccggg
    33541 gacgaggaag ccagaggtgg agttaggatc gccattgccg aaggtgagat ctttccgctt
    33601 cgccagcaga tcgttcaggt tgttgatcgg actatctttg ttgacgatca acacgctcca
    33661 gtaacctggc gatccatccg ccgcgaccgt ctgggcgaag acctggccgt tggcgcgatc
    33721 caccgcttcc attgccgaca ggttgcctta ccaggcgata tccactttat tgaagcgcat
    33781 tccctggata atgcctgcgt agtctggggc aaagaaggcg ttcaccttca cgcccagctt
    33841 cttctccata tcctgtaaga atggcgtcca ttgcggtttc aggttttgct gtgattccgt
    33901 tgaaataatg ccgaaattca gcgccttttc ctgctcttcg gcgtgtgccg ggcttaacag
    33961 ggtgctgagg ctgaacatgc tggtgaaggc cagcgaggca attatcttag cgttcattcg
    34021 ttttcctcaa tgatggggat gtcaggcagc tttcgcgttc tcttcgatgc gattaatgct
    34081 gcggtagaga tggtcaaaac gttcgttatc aaactgttgg ctgctgccgt cgtagaaaac
    34141 gtgcccctgg cgcagggcga cgatgcgttc gcagtagcgc agggcgtaat ccacctgatg
    34201 cagcgtgacg actacggtga tgccgtcgtt ctgattgatg tcgcgcaggg tgtccatcac
    34261 gatgcgggcg gattccgggt ccagcgaggc gatgggttca tcggccagaa tcaccttcgc
    34321 ctgctgcatc agcgcgcggg caatcgccac acgctgctgc tgtccgccgg agagggtgga
    34381 aacgcgttga tgggcaaaat gcaccatgcc aacgcgggtc agcgcctgta acgcgcgttg
    34441 tttctgctcg cgggtgaacc agctaaaaca ggtgcgccag aacggcgtgc tgccgagcgc
    34501 gccaatcagc acgttctcca gtacgctcag gcgattcacc aggttgaatt gttggaagat
    34561 gtagccggta tgggcgcggc ttttgcggat atcgcgcgcc agacggcctt cgcgctggac
    34621 tgtgcggccc agcagctcga tatggctgcc ggcggattta tcgccggtaa tcaaaccgct
    34681 taagtgacgt aaaagtgtgg atttgccgga acccgacggc ccaagcagag ccaccatttc
    34741 actgtgatga atgttcagat caaccgcatg cagcgcttga tgctgattga aggttttggc
    34801 gagcttctcg acacggataa tcgtttgcat gatgcagcct ccctaaaaaa gtggctccat
    34861 cgtggcggat tattgtgacg atttggttaa ttaaaagtga ctaacagatg aagagttaac
    34921 gggaattcga tgacagtgcg ggagggcggg cctcccggcg ggttattgcg ttggttgttg
    34981 tttgacgaca ttaatcatcc acggtacgcc aaatttatcg gtgactttgc cgaagccatg
    35041 cgcccagaaa gtttcctgcc aggccatttc aatttttccg ttagcggcaa ggttatcaaa
    35101 ccagcgtttt ccttcttcga cctgttgcga atcgagcacc agcgtaaagc cggagtagct
    35161 ggcttttcct gacggtatag catcgctcat catgatgtcg cttccggcaa tgcgcacgtt
    35221 ggcgtgggcg atggcggtat cgggaaattg cattccggaa gggcagttct cggcgctgtc
    35281 ctgcgctgat tttggcattt cgccgaagct gattttatag agcagttccg cgcccaacgt
    35341 acgttgataa taggcaatcg cgtcggaaca gttaccggca aaagagaggt agggacttaa
    35401 cggcatgatg gtgacctcag ttaagagaag ccagttaagt gtagttcgaa atttatacag
    35461 atgagaggga agcctgataa ggcgcggtca gcgtcgcatc aggcagtcgg catcgttgcc
    35521 ggatgtggcg cgagcgcctt atccggctta ccgatcacaa tacaatcagt tctttttcac
    35581 aaactcagat ttcagtttca tcggaccaaa accgtcgatt ttgcaatcga tgttatggtc
    35641 gccttcaacc aggcggatgt ttttcacttt ggtgccaatt ttcagcatcg aagagctacc
    35701 tttcaccttc agatctttaa tgatggtaac gctgtcgccg tcagccagca gattgccgtt
    35761 agcatcttta acgatcagct cgtcgctttc ctgtgcaggt tctgtgtcgt tccattcgta
    35821 ggcacattcc gggcagatgt acatgccgtt atcttcgtaa gtgtattcgg agttgcattt
    35881 tgggcagtgt ggtaatgaca tgtggatttc ctcaaaagtc agcagggcaa aagcgccaaa
    35941 aaacggcaga ttgccgaaaa aggccgcaat tatacacaaa atccctgagt ttgtcggggg
    36001 tactgctgat tttagacgac gatcgttttc atttgaaagg aaacgcaaaa agaaaataat
    36061 ctttttgcct ctatttatta tttaagataa tgttaatgct ctacctgttc tttttttatt
    36121 cacatgatat ttttatcttt ctgacgtttt aaacgcatca gaagacgtta tttattctga
    36181 taaaaaacaa cacactaaat ataaaat
//
LOCUS       DAJVSY010000022        35865 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.022, whole genome shotgun sequence.
ACCESSION   DAJVSY010000022 DAJVSY010000000
VERSION     DAJVSY010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 35865)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35865)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35865
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.022"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            164..421
                     /locus_tag="OQQ19_000989"
     CDS             164..421
                     /locus_tag="OQQ19_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000177060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802697.1"
                     /translation="MTLVNDTGFDPVFSGSIAESWRQQPCTPSYCCDWEAATMLRAFP
                     LAKKGEGRARLPSLYASFGKLGETPTHEDIIDNNRSINWPV"
     gene            complement(979..1746)
                     /gene="fecE"
                     /locus_tag="OQQ19_000990"
     CDS             complement(979..1746)
                     /gene="fecE"
                     /locus_tag="OQQ19_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) dicitrate ABC transporter ATP-binding
                     protein FecE"
                     /protein_id="HCS1802698.1"
                     /translation="MTLRTENLTVSYGTDKVLNDVSLSLPTGKITALIGPNGCGKSTL
                     LNCFSRLLMPQSGTVFLGDNPINMLSSRQLARRLSLLPQHHLTPEGITVQELVSYGRN
                     PWLSLWGRLSAEDNARVNVAMNQTRINHLAVRRLTELSGGQRQRAFLAMVLAQNTPVV
                     LLDEPTTYLDINHQVDLMRLMGELRTQGKTVVAVLHDLNQASRYCDQLVVMANGHVMA
                     QGTPEEVMTPGLLRTVFSVEAEIHPEPVSGRPMCLMR"
     gene            complement(1747..2703)
                     /gene="fecD"
                     /locus_tag="OQQ19_000991"
     CDS             complement(1747..2703)
                     /gene="fecD"
                     /locus_tag="OQQ19_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) dicitrate ABC transporter permease
                     subunit FecD"
                     /protein_id="HCS1802699.1"
                     /translation="MKIALVIFITLALAGCALLSLHMGVIPVPWRALLTDWQAGREHY
                     YVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASPDILGVNHAASLASVGALLL
                     MPSLPVMVLPLLAFAGGMAGLILLKMLAKTHQPMKLALTGVALSACWASLTDYLMLSR
                     PQDVNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLG
                     VSVPHTRFWALLLAVAMTSTGVAACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTG
                     ALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVRMR"
     gene            complement(2700..3698)
                     /gene="fecC"
                     /locus_tag="OQQ19_000992"
     CDS             complement(2700..3698)
                     /gene="fecC"
                     /locus_tag="OQQ19_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-dicitrate ABC transporter permease FecC"
                     /protein_id="HCS1802700.1"
                     /translation="MTAIKHPMLLWGLPVAALIIIFWLSLFCYSAIPVSGADATRALL
                     PGHTPTLPEALVQNLRLPRSLVAVLIGASLALAGTLLQTLTHNPMASPSLLGINSGAA
                     LAMALTSALSPTPIAGYSLSFIAACGGGVSWLLVMTAGGGFRHTHDRNKLILAGIALS
                     AFCMGLTRITLLLAEDHAYGIFYWLAGGVSHARWQDVWQLLPVVVTAVPVVLLLANQL
                     NLLNLSDSTAHTLGVNLTRLRLVINMLVLLLVGACVSVAGPVAFIGLLVPHLARFWAG
                     FDQRNVLPVSMLLGATLMLLADVLARALAFPGDLPAGAVLALIGSPCFVWLVRRRG"
     gene            complement(3695..4597)
                     /gene="fecB"
                     /locus_tag="OQQ19_000993"
     CDS             complement(3695..4597)
                     /gene="fecB"
                     /locus_tag="OQQ19_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) dicitrate ABC transporter
                     substrate-binding protein FecB"
                     /protein_id="HCS1802701.1"
                     /translation="MLAFIRFLFAGLLLVISHAFAAMVQDEHGTFTLEKTPQRIVVLE
                     LSFADALAAVDVSPIGIADDNDAKRILPEVRAHLKPWQSVGTRAQPSLEAIAALKPDL
                     IIADSSRHAGVYIALQQIAPVLLLKSRNETYAENLQSAAIIGEMVGKKREMQARLEQH
                     KERMAQWASQLPKGTRVAFGTSREQQFNLHTQETWTGSVLASLGLNVPAAMAGSSMPS
                     IGLEQLLAVNPAWLLVAHYREESIVKRWQQDPLWQMLTAAQKQQVASVDSNTWARMRG
                     IFAAERIAADTVKIFHHQPLTVVK"
     gene            complement(4642..6966)
                     /gene="fecA"
                     /locus_tag="OQQ19_000994"
     CDS             complement(4642..6966)
                     /gene="fecA"
                     /locus_tag="OQQ19_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) dicitrate transport protein FecA"
                     /protein_id="HCS1802702.1"
                     /translation="MTPLRVFRKTTPLVNAIRLSLLPLAGLSFSAFAAQVNIAPGSLD
                     KALNQYAAHSGFTLSVDASLTRGKQSNGLHGDYDVESGLQQLLDGSGLQVKPLGNNSW
                     TLEPAPAPKEDALTVVGDWLGDARENDVFEHAGARDVIRREDFAKTGATTMREVLNRI
                     PGVSAPENNGTGSHDLAMNFGIRGLNPRLASRSTVLMDGIPVPFAPYGQPQLSLAPIS
                     LGNMDAIDVVRGGGAVRYGPQSVGGVVNFVTRAIPQDFGIEAGVEGQLSPTSSQNNPK
                     ETHNLMVGGTADNGFGTALLYSGTRGSDWREHSATRIDDLMLKSKYAPDEVHTFNSLL
                     QYYDGEADMPGGLSRADYDADRWQSTRPYDRFWGRRKLASLGYQFQPDSQHKFNIQGF
                     YTQTLRSGYLEQGKRITLSPRNYWVRGIEPRYSQIFMIGPSAHEVGVGYRYVNESTHE
                     MRYYTATSSGQLPSGSSPYDRDTRSGTEAHAWYLDDKIDIGNWTITPGMRFEHIESYQ
                     NNAITGTHEEVSYNAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQIGKAVQSGNVE
                     PEKARTWELGTRYDDGALTAEMGLFLINFNNQYDSNQTNDTVTARGKTRHTGLETQAR
                     YDLGTLTPTLDNVSIYASYAYVNAEIREKGDTYGNLVPFSPKHKGTLGVDYKPGNWTF
                     NLNSDFQSSQFADNANTVKESADGSTGRIPGFMLWGARVAYDFGPQMADLNLAFGVKN
                     IFDQDYFIRSYDDNNKGIYAGQPRTLYMQGSLKF"
     gene            complement(7053..8006)
                     /gene="fecR"
                     /locus_tag="OQQ19_000995"
     CDS             complement(7053..8006)
                     /gene="fecR"
                     /locus_tag="OQQ19_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fec operon regulator FecR"
                     /protein_id="HCS1802703.1"
                     /translation="MNPLLTDSRRQALRSASHWYAVLSGERVSPQQEARWQQWYEQDQ
                     DNQWAWQQVENLRNQLGGVPGDVASRALHDTRLTRRHVMKGLLLLLGAGGGWQLWQSE
                     TGEGLRADYRTAKGTVSRQQLEDGSLLTLNTQSAADVRFDAHQRTVRLWYGEIAITTA
                     KDALQRPFRVLTRQGQLTALGTEFTVRQQDNFTQLDVQQHAVEVLLASAPAQKRIVNA
                     GESLQFSASEFGAVKPLDDESTSWTKDILSFSDKPLGEVIATLTRYRNGVLRCDPAVA
                     GLRLSGTFPLKNTDAILNVIAQTLPVKIQSITRYWINISPL"
     gene            complement(8003..8524)
                     /gene="fecI"
                     /locus_tag="OQQ19_000996"
     CDS             complement(8003..8524)
                     /gene="fecI"
                     /locus_tag="OQQ19_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FecI"
                     /protein_id="HCS1802704.1"
                     /translation="MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQD
                     TFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPE
                     ERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA
                     VEHCLLFRLEYGL"
     gene            8822..9004
                     /locus_tag="OQQ19_000997"
                     /pseudo
     CDS             8822..9004
                     /locus_tag="OQQ19_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012767718.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            8998..9102
                     /locus_tag="OQQ19_000998"
                     /pseudo
     CDS             8998..9102
                     /locus_tag="OQQ19_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612091.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            9442..9699
                     /locus_tag="OQQ19_000999"
     CDS             9442..9699
                     /locus_tag="OQQ19_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016230781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm development YmgB/AriR family protein"
                     /protein_id="HCS1802705.1"
                     /translation="MHSDYYNMVFGEKLANILYEANSQFFYERNVIEEAVNALFCERE
                     IINNKNIIKKLMFFLSDVNHTKKDVVQSALNIIIDITSGDI"
     gene            complement(10019..10150)
                     /locus_tag="OQQ19_001000"
                     /pseudo
     CDS             complement(10019..10150)
                     /locus_tag="OQQ19_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612086.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            10432..11790
                     /locus_tag="OQQ19_001001"
     CDS             10432..11790
                     /locus_tag="OQQ19_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000823236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HCS1802706.1"
                     /translation="MKRKIIPVLIGCTLSFSALAAQPTAERYVVSFPEGTHVNYAGAF
                     ASAFPNGLPVGIGSGLLFTGKQGDALTFATITDRGPNADSPKEGKNETKIFVTPDFAP
                     LLMTIRVQNGKAEAIDPRPLHDDKGAINGLPLASDVIGSTNEVAFSDTLHRLKGDNRG
                     LDTEGITPDGKGGYWLCDEYGPFLINIDSKGKILAIHGPQAAEGEKAIAGGLPNILKW
                     RQANRGFEGLTRMPDGRIIVAVQSTLDIDAKSKKKALFTRLVSFDPASGKTAMYGYPI
                     DSAAYSKNSDAKIGDIVALDNQHILLIEQGRDKNNRMRNLIYEVDLNKASDLSGFDKP
                     GEYPEFDDEKTLSQRGITLAQKTQVVDLRSLGWQQEKAEGLALIDSKTLAVANDNDFG
                     VKVAMQHPVEGKTFKDYRVNAEGKLTLDDKQVETTLRVKPLEKPESDSELWIVTLPEA
                     LK"
     gene            complement(12029..13414)
                     /locus_tag="OQQ19_001002"
     CDS             complement(12029..13414)
                     /locus_tag="OQQ19_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000998048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HCS1802707.1"
                     /translation="MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQL
                     DKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPF
                     PESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQC
                     DTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG
                     WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNA
                     GSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHA
                     RRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLES
                     WLREKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSE
                     LLPWRIALPAE"
     gene            complement(13464..13811)
                     /gene="tnpB"
                     /locus_tag="OQQ19_001003"
     CDS             complement(13464..13811)
                     /gene="tnpB"
                     /locus_tag="OQQ19_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019104956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS1802708.1"
                     /translation="MIPLPSGTKIWLVAGITDMRNSFNGLAAKVQTALKDDPMSGHIF
                     IFRGRSGSQVKLLWSTGDGLCLLTKRLERGRFAWPSARDGKVFLTQAQLAMLLEGIDW
                     RQPKRLLTSLTML"
     gene            complement(13808..14188)
                     /locus_tag="OQQ19_001004"
     CDS             complement(13808..14188)
                     /locus_tag="OQQ19_001004"
                     /inference="COORDINATES: protein motif:HMM:NF013677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence hypothetical
                     protein"
                     /protein_id="HCS1802709.1"
                     /translation="MQKNVTPGRRKGCPNYPPEFKQLLVAASCEPGISISKLALENGI
                     NANLLFKWRQQWREGKLLLPSSESPQLLPVTLDAAAEQPESLAEDPETLSISCEVTFR
                     HGTLRFNGNVSEKLLTLLIQELKR"
     gene            complement(14543..14977)
                     /locus_tag="OQQ19_001005"
     CDS             complement(14543..14977)
                     /locus_tag="OQQ19_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001556209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HCS1802710.1"
                     /translation="MRILNCYMANDSKGHFVTAKEAAKHNRQDVLCCVSCGCPLTLQR
                     GNDGQPPWFEHDQMTVAEKILLRCTWLDPAEKEARRLHLQGMTVPDYTVKVRKWFCVM
                     CDEDYEGEKCCPRCGTGVYSRAWGRQEVPSEDARADNPLQRL"
     gene            complement(14965..15366)
                     /locus_tag="OQQ19_001006"
     CDS             complement(14965..15366)
                     /locus_tag="OQQ19_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004020115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802711.1"
                     /translation="MYAKSFIALDGNGRLTGARTAQAAPYANYTCHLCGSALRYHPQY
                     ETELPWFEHTDDRLTEHGQQCPYVRPERREIQLIKRLQQFVPDALPVVRKASWHCRQC
                     HHDYYGEQYCTHCQTGGFSIPRTTQEEICEF"
     gene            complement(15626..16195)
                     /locus_tag="OQQ19_001007"
     CDS             complement(15626..16195)
                     /locus_tag="OQQ19_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000221568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inovirus Gp2 family protein"
                     /protein_id="HCS1802712.1"
                     /translation="MTYKYNPFWQQRIRETVRHALNVHPRLTALRVDLRLPDVPAATD
                     AAVISRFINALKARIDAYQKRKHREGKRVHPTTLHYVWAREFGECKGKKHYHLMLLVN
                     RDTWCRAGDYRAPESLAGMIKQAWCSALGVDVGCHATLVHFPAWPAVWLARNDDTGFQ
                     QVLERADYLAKEHTKAHCTGERNFGCSRS"
     gene            complement(16940..17083)
                     /locus_tag="OQQ19_001008"
                     /pseudo
     CDS             complement(16940..17083)
                     /locus_tag="OQQ19_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000453335.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin activation protein"
     gene            complement(17417..17683)
                     /locus_tag="OQQ19_001009"
     CDS             complement(17417..17683)
                     /locus_tag="OQQ19_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000840368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802713.1"
                     /translation="MAEPYRYTGWLLRKDASARTRDKEGIVFVRTGREAGVLIIAELF
                     SEVVTVSQPVPGEEETDITDGIRLSDWYYKYKKSSESNVKDLPE"
     gene            17824..18030
                     /locus_tag="OQQ19_001010"
     CDS             17824..18030
                     /locus_tag="OQQ19_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family transcriptional regulator"
                     /protein_id="HCS1802714.1"
                     /translation="MATPVSLMDDQMVDMAFITQLTGLTDKWFYRLIRDGAFPAPIKL
                     GRSSRWLKSEVEAWLQARIAQPRP"
     gene            18125..18727
                     /locus_tag="OQQ19_001011"
     CDS             18125..18727
                     /locus_tag="OQQ19_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001546339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802715.1"
                     /translation="MKQQYQTRYEWLHESYQKWLTGFTRHAVSWGVCHPNIYYFHNLT
                     PGWVSFNGEKPEIAIVPQSLHRLIYGPDKRATPPLDDDLIVNLCTSEHLLVHHPMLEG
                     ILLSECERLRQRSLANKLISLFRQFGGTELRLKLVWLCWLDLMTGNSLEDWKENLKRK
                     SEKELEEWIINRQRQSAALTDLMDQYVLLAYRTTVDDSRN"
     gene            19927..20844
                     /locus_tag="OQQ19_001012"
     CDS             19927..20844
                     /locus_tag="OQQ19_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016230784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802716.1"
                     /translation="MVQKILSDKVMNERTNAYYSYYLGERNISVLPLNVYDPPERFIA
                     YIKKNRENLNITLSDFELEQIISGMRLKALAFLVPLEKISWIAGSERACLFSWYLLMQ
                     FIQNNRAKISADLLQKNKLYLKEEYLEGNAFPSDSSTQFRQILRVLDILSDKNLRDEW
                     IIQTKDRWMRAFKSKSPFSYLLPENEHECIWTWNYLKGKNIALEKLASFPGSADIYHA
                     IHLSFDIWVTCPLTSPDDIKNFRNSFNKAKAQRKYKKMQEDKVNVQFFLDAETRAQLK
                     ELSRVRRLSTGEMLHDLIVEEYKRYRHSR"
     gene            20929..21801
                     /locus_tag="OQQ19_001013"
     CDS             20929..21801
                     /locus_tag="OQQ19_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase family protein"
                     /protein_id="HCS1802717.1"
                     /translation="MNPSDAIEAIEKPLSSLPYSLSRHILEHLRKLTSHEPVIGIMGK
                     SGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESRDRDA
                     EYEALYRDILPELDLVLWLIKADDRALSVDEYFWRHILHRGHQQVLFVVTQADKTEPC
                     HEWDMAGIQPSPAQAQNIREKTEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALP
                     DHAASPLMTRLQDELRTESVRGQAREQFTGAVDRIFDTAESVCVASVARTVLRAVRDT
                     VVSVARAVWNWIFF"
     gene            22173..25019
                     /gene="ag43"
                     /locus_tag="OQQ19_001014"
     CDS             22173..25019
                     /gene="ag43"
                     /locus_tag="OQQ19_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter adhesin Ag43"
                     /protein_id="HCS1802718.1"
                     /translation="MKRHLNTSYRLVWNHITGTLVVASELARSRGKRAGVAVVLSLAA
                     VTSVPALAADTIVQAGETVNGGTLTNHDNQIVLGTANGMTISSGLEYGPDNEANTGGQ
                     WIQNGGIANNTTVTGGGLQRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGEQWVHE
                     GGIATGTVINEKGWQTVKSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINE
                     NGRQIVAAEGTANTTVVYAGGDQTVHGHALDTTLNGGYQYVHNGGTASGTVVNSDGWQ
                     IIKEGGLADFTTVNQKGKLQVNAGGTATHVTLKQGGALVTSTAATVLGSNRLGNFTVE
                     NGKADGVVLESGGRLDVLEGHSAQKTRVDDGGTLAVSAGGKATGVTMTSGGALIADSG
                     ATVEGTNASGKFSIDGTSGQASGLLLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGS
                     LSGRTQLSKGASMVLNGDVVSTGDIVNAGEIRFDNQTTPDAALSRAVAKGDSPVTFHK
                     LTTSNLTGQGGTINMRVRLDGSNTSDQLVINGGQATGKTWLAFTNVGNSNLGVATSGQ
                     GIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTS
                     MLTQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSY
                     GFVRLEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL
                     THTSSGLWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQL
                     HYTWQGLTLDDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMSFGEGTSSRDTLRDSTK
                     HRVSELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARV
                     RENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF"
     gene            25090..25248
                     /locus_tag="OQQ19_001015"
     CDS             25090..25248
                     /locus_tag="OQQ19_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001550547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF905 family protein"
                     /protein_id="HCS1802719.1"
                     /translation="MPGCTSRLLPEGPFSREQAVAVKTAYRNVFTEDDQGTYSRLVIR
                     NAEGQLRW"
     gene            25403..26221
                     /locus_tag="OQQ19_001016"
     CDS             25403..26221
                     /locus_tag="OQQ19_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF945 domain-containing protein"
                     /protein_id="HCS1802720.1"
                     /translation="MRLASRFGYANQIRRDRPLTHEELMHYVPSIFGEDRHTSRSKRY
                     AYIPTITVLESLQQEGFQPFFACQTRVRDPGRRGYTKHMLRLRRAGEINGEHVPEIIL
                     LNSHDGTSSYQMLPGYFRFVCQNGCVCGQSLGEVRVPHRGNVVEKVIEGAYEVVGVFD
                     RIEEKRDAMQSLVLPPPARQALAQAALTYRYGDEHQPVTTADILTPRRREDYGKDLWS
                     AYQTIQENMLKGGISGRSAKGKRIHTRAIHNIDTDIKLNRALWVMAETLLESLR"
     gene            26563..27036
                     /locus_tag="OQQ19_001017"
     CDS             26563..27036
                     /locus_tag="OQQ19_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708769.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antirestriction protein"
                     /protein_id="HCS1802721.1"
                     /translation="MKTLSQNTTASACAPETGLQQLVATPVPDEQRISFWPQHFGLIP
                     QWVTLEPRVFGWMDRLCEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNAMNGN
                     RAEMSPEAAGIAACLMTYSHHACRTECYAMTVHYYRLRDYALQHPECSAIMRIID"
     gene            27052..27528
                     /locus_tag="OQQ19_001018"
     CDS             27052..27528
                     /locus_tag="OQQ19_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RadC family protein"
                     /protein_id="HCS1802722.1"
                     /translation="MQQLSFLPGNMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAR
                     EWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAA
                     VVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL"
     gene            27591..27812
                     /locus_tag="OQQ19_001019"
     CDS             27591..27812
                     /locus_tag="OQQ19_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF987 domain-containing protein"
                     /protein_id="HCS1802723.1"
                     /translation="MRIITRGEAMRIHQQHPASRLFPFCTGKYRWHGSAEAYTGREVQ
                     DIPGVLAVFAERRKDSFGPYVRLMSVTLN"
     gene            27975..28349
                     /locus_tag="OQQ19_001020"
     CDS             27975..28349
                     /locus_tag="OQQ19_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV toxin-antitoxin system YeeU family
                     antitoxin"
                     /protein_id="HCS1802724.1"
                     /translation="MSDKLSGITHPDDNHDRPWWGLPCTVRPCFGARLVQEGNRLYYL
                     ADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSGELNPRYQHTVTLYAKGLTCEAD
                     TLGSCGYVYLAVYPTPAPATTS"
     gene            28396..28770
                     /locus_tag="OQQ19_001021"
     CDS             28396..28770
                     /locus_tag="OQQ19_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin"
                     /protein_id="HCS1802725.1"
                     /translation="MKTLSDTHVREVSRCPSPVTIWQTLLIRLLDQHYGLTLNDTPFV
                     DERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGFSTCPRSQLINSIDILRARRATG
                     LMTRDNYRTVNNITLGKYPEAK"
     gene            28767..29258
                     /locus_tag="OQQ19_001022"
     CDS             28767..29258
                     /locus_tag="OQQ19_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309434.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802726.1"
                     /translation="MMKLALTLEADSVNVQALNIGRIVVDVDGIELAELINMVCDNGY
                     SLRVVDESDQTSAECTPPFATLTGIRCSTAHITETDNAWLYSLSHQTSDFGESEWIHF
                     TGSGYLLRTDAWSYPVLRLKRLGLSKTFRRLVVTLIRRYGVSLIHLDASAECLPGLPT
                     FDW"
     gene            29270..29467
                     /locus_tag="OQQ19_001023"
     CDS             29270..29467
                     /locus_tag="OQQ19_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802727.1"
                     /translation="MKSLTTETALDILIAWLQDNIDCGSGIIFDNDEDKTDSAALLPC
                     IEQAREDVRTLRHLQLLHQNR"
     gene            29552..30112
                     /locus_tag="OQQ19_001024"
                     /pseudo
     CDS             29552..30112
                     /locus_tag="OQQ19_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309436.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4942 domain-containing protein"
     gene            30184..31188
                     /locus_tag="OQQ19_001025"
     CDS             30184..31188
                     /locus_tag="OQQ19_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001179707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110-like element ISSfl8 family transposase"
                     /protein_id="HCS1802728.1"
                     /translation="MQNITLIGIDLGKHSFHIHCQDKSGKALLRKKFTRTKLMQFLAT
                     CPPSVVVMEACAGAHFMARCISDFGHETKLISPQFVRPFVKSNKNDFVDAEAICEAAS
                     RPSMRFVQPRTETQQAMRALHRVRESLIRDKVKTTNQIHGFLLEFGISLPIGDAVIKR
                     LSLVLAEHEIPEYLSRLLVRLHTHYFYLVEQIAELESELSQSINADDTAQRIMTIPGV
                     GPITASLLSSQLGDGKQFSCSRDFAASTGLVPRQYSTGGKSTLLGISKRGDKNLRRLL
                     VQCARSFIMRLERKHGKLAEWVREQLNKKHSNVVTCALANKLARIAWAITTQKKEYQA
                     "
     gene            31470..31751
                     /locus_tag="OQQ19_001026"
                     /pseudo
     CDS             31470..31751
                     /locus_tag="OQQ19_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309436.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4942 domain-containing protein"
     gene            complement(31901..31988)
                     /locus_tag="OQQ19_001027"
     tRNA            complement(31901..31988)
                     /locus_tag="OQQ19_001027"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(31952..31954),aa:Ser,seq:gga)
     gene            32222..33160
                     /gene="ghrA"
                     /locus_tag="OQQ19_001028"
     CDS             32222..33160
                     /gene="ghrA"
                     /locus_tag="OQQ19_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415551.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase GhrA"
                     /protein_id="HCS1802729.1"
                     /translation="MDIIFYHPTFDTQWWIEALRKAIPQARVRAWKSGDNDSADYALV
                     WHPPVEMLAGRDLKAVFALGAGVDSILSKLQAHPEMLNPSVPLFRLEDTGMGEQMQEY
                     AVSQVLHWFRRFDDYRIQQNSSHWQPLPEYHWEDFTIGILGAGVLGSKVAQSLQTWRF
                     PLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPD
                     GAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHV
                     AAITRPAEAVEYISRTIAQLEKGERVCGQVDRARGY"
     gene            33215..33952
                     /gene="ycdX"
                     /locus_tag="OQQ19_001029"
     CDS             33215..33952
                     /gene="ycdX"
                     /locus_tag="OQQ19_001029"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding phosphatase"
                     /protein_id="HCS1802730.1"
                     /translation="MYPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDM
                     EDAPHHWHFINMRIWPRVVDGVGILRGIEANIKNVDGEIDCSGKMFDSLDLIIAGFHE
                     PVFAPHDKATNTQAMIATIASGNVHIISHPGNPKYEIDVKAVAEAAAKHQVALEINNS
                     SFLHSRKGSEDNCRAVAAAVRDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFPPER
                     ILNVSPRRLLNFLESRGMAPIAEFADL"
     gene            33976..34530
                     /gene="ycdY"
                     /locus_tag="OQQ19_001030"
     CDS             33976..34530
                     /gene="ycdY"
                     /locus_tag="OQQ19_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone YcdY"
                     /protein_id="HCS1802731.1"
                     /translation="MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQ
                     DELLTRLQKSCDMAQVSADYNALFIGDECAVPPYRSAWVEDATEAEVRAFLSERGMPL
                     ADTPADHIGTLLLAASWMEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFW
                     RTMAPLTRDAISAMWDELEEDSEE"
     gene            34632..35123
                     /locus_tag="OQQ19_001031"
     CDS             34632..35123
                     /locus_tag="OQQ19_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415554.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1097 domain-containing protein"
                     /protein_id="HCS1802732.1"
                     /translation="MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQ
                     GGLKGLAISAATLLSGVVWAMVIIYGSALAPHLEILGYVITGIVAFLMCIQAKQLLLS
                     FVPGTFIGACATFAGQGDWKLVLPSLALGLVFGYAMKNSGLWLAARSAKTAHREQEIK
                     NKA"
     gene            complement(35187..35865)
                     /gene="csgG"
                     /locus_tag="OQQ19_001032"
                     /pseudo
     CDS             complement(35187..35865)
                     /gene="csgG"
                     /locus_tag="OQQ19_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309441.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="curli production assembly/transport protein
                     CsgG"
BASE COUNT         8562 a         9373 c         9457 g         8473 t
ORIGIN      
        1 gaatataatg gtgggttacc accaaacgaa tcagaaaacc gatactggaa aaactctaac
       61 gcggaggcca gttttagttg accacaacag actacctgaa gggagccgcg gtcgcctagc
      121 agttgcagta gcaggagatc atccagccgc agtacaggtc acgatgactc tggttaatga
      181 taccggcttt gaccccgtat tttccggctc tatcgctgaa tcatggcgtc agcagccgtg
      241 cacaccatcc tattgttgtg actgggaggc tgccaccatg cttcgcgctt tccctctggc
      301 gaaaaaggga gaaggacggg cccgtctgcc ttcactttat gccagcttcg gtaagctggg
      361 tgagacaccg actcatgaag atatcattga taacaatcga tccatcaact ggcctgtata
      421 acgtggctgc cggtgattaa gaaagctgca cctacctaag tagtagcaaa cgcacacttt
      481 ttagaaaaat cgatggtcag aaactggatt agcaattccg ttccagggtt gcttttgatt
      541 tacgttggcg tctgatcatt gatttatcct caaaagccca acctcattgg taatgaacca
      601 gctccgtgaa tgtccgctct ggcacagagc gaaatttttt gatctccccc cctgaaatct
      661 aaacttagtc atgtcacgtt tttgggtttc taaaatttta acttcgcgtt tttcgttgcc
      721 gtaagggtta tacagaaatg tccgttaagc agagttcaaa attgattgcc gtgatcacga
      781 ctggtttgaa agccgcgccc aagcctgtac agctctggtt tgcgttgatt atgaacctgt
      841 cagcctaaag caagcggatg gacgatgagt attggtaatc tttcagagtc cggaaaagtt
      901 cagccccagt ctgaacaggc ttgctggcgc cagtccagtt tcattcagtc gtggtttggt
      961 tcttacggcc tgtgcaatct acctcattag gcacatcggc ctgccagata ccggctcggg
     1021 gtgtatttcc gcttccacgc tgaatactgt tctcagcaat cctggggtca tcacctcttc
     1081 tggtgtgcct tgcgccataa catgtccgtt tgccattacc accagttgat cgcagtaccg
     1141 gctagcctga ttaaggtcgt gcagcacagc gaccaccgtt ttcccctgag tccggagttc
     1201 gcccatcaac cgcatcaggt ccacctggtg attgatatca agataggtgg ttggctcatc
     1261 aagtaataca acgggcgtat tctgggccag gaccatcgcc agaaatgcgc gctggcgctg
     1321 accgccggaa agctcggtta accgacgaac ggcaagatga ttgatccggg tctggttcat
     1381 ggcgacatta actcgtgcat tgtcttcagc ggagagacgc ccccagagtg acagccaggg
     1441 attacgacca tacgaaacca gctcctggac tgtgatcccc tctggcgtta aatggtgctg
     1501 aggcagcagc gaaagcctgc gggccaactg gcgtgatgag agcatattta tgggattatc
     1561 gccgagaaat acggtgccag actgcggcat taaaagccgc gaaaaacagt ttaacagcgt
     1621 cgatttcccg caaccgttag ggccgatcag ggcggtgatc ttccccgttg gcagtgagag
     1681 tgaaacgtcg ttaagtacct tgtctgtccc gtaactgacc gtcagatttt cagttcgtaa
     1741 agtcatttat cgcattctca caagcaacca gacaaaccac ggcgcaccga taatggcggt
     1801 cagcacgcca accgggagct ccagtggggg atgaataatt ctcgccagca gatcggcaac
     1861 caccaacagc aacgcacctg tcagggctga aacaggcagc agtctgcggt gacgtccacc
     1921 ggtgatgcta cgcatcatat gcggcaccac gagaccaata aagctaatcg ggccgcaggc
     1981 ggccacgccg gtagatgtca tggcgacagc tagtaacaaa gcccagaatc gggtatgggg
     2041 caccgacaca ccgagcgtgg tggcgcgcgc atcgccgagt gcaaggaggt cgagatcgcg
     2101 gcaaaaactc aggctcagcg gcagaaataa aatcatcagc gggatggcaa tcttcacaaa
     2161 gctccagtca cggccccata agctgccggt cagccacagc agggcgttgt tcacatcctg
     2221 cgggcgcgag agcatcagat aatccgtcag gctggcccag catgcagaaa gcgccacgcc
     2281 ggtgagcgcc agcttcatcg gctggtgggt ctttgccagc atcttcagta atatcaaccc
     2341 cgccatgccg cccgcaaagg ccagcagcgg cagcaccatc acgggcagtg acggcataag
     2401 aagtagagcc cccacagagg ccaggctggc ggcatggtta acgccgagaa tatccggtga
     2461 tgccagaggg ttgcgcacaa tcccctgtat cagcacgccc gccacggcga gggctgcacc
     2521 gacaaacagt gccagcagca agcgcggcag tcggtactcc atcaatacat aataatgctc
     2581 gcgtccggcc tgccagtcgg tcagcagcgc gcgccacggc acggggatca ctcccatatg
     2641 gagtgataac agcgcacagc ccgccagggc aagggtgatg aaaataacca gcgcaatttt
     2701 catcctcgcc tcctcacaag ccagacaaag caagggctgc caatcagcgc cagcactgcg
     2761 cctgcgggca gatctccggg gaaggccagc gcgcgtgcga gtacatctgc cagcagcatc
     2821 agcgtggccc ccagcagcat gctcactggc agtacgttgc gctgatcgaa gcctgcccag
     2881 aagcgcgcca gatgtggcac cagcagaccg ataaacgcca ccggacctgc cacgctgacg
     2941 cacgcaccaa ccagaagcag cactaacata ttgatgacca aacgtagcct cgtcaggttc
     3001 actcccagcg tatgggcggt gctgtcgctg aggttgagca ggttcagttg attcgccagc
     3061 agtaacacga cagggactgc agtgaccacc accggcaaga gctgccagac atcctgccag
     3121 cgggcgtggg acactccgcc tgccagccag taaaagatgc cgtaagcatg atcttcggcc
     3181 agcagcaggg tgatgcgggt aaggcccata caaaaggccg acagcgcgat acccgcgagg
     3241 atcagtttgt ttctgtcatg ggtatgacga aatccgcctc ctgcggtcat gaccagcagc
     3301 cagctcacgc cgcccccgca tgccgcgatg aacgacagag aatagcctgc aatcggcgtc
     3361 ggactcagcg cgctggtaag cgccatagcc agcgccgcgc cgctgttaat gccgagcagt
     3421 gaaggagagg ccattgggtt gtgggtcagg gtttgcagca gcgtgcccgc gagcgccagg
     3481 cttgcgccga tcagaacggc gaccaggctt cgtggcaaac gaaggttttg caccagcgct
     3541 tctggtagcg ttggcgtgtg tccaggcagc agggcgcggg ttgcatctgc tccggaaaca
     3601 ggaatggccg agtagcaaaa cagactcagc cagaaaataa taataagtgc tgcaacggga
     3661 agcccccaca gcagcatcgg gtgttttatc gcggtcattt cacaacggta agcggctgat
     3721 ggtggaagat ttttaccgtg tcagcggcaa tacgctctgc agcaaaaata ccgcgcatcc
     3781 gcgcccaggt gttactgtcg accgaagcaa cctgctgctt ctgcgcggcg gttaacatct
     3841 gccagagcgg atcttgttgc cagcgtttaa caatgctctc ttcgcgatag tgggcaacca
     3901 gcagccaggc aggattgacc gccagcagtt gctccaggcc gatggacggc atggacgaac
     3961 ccgccatcgc agcgggaacg ttcagcccca gagaggccag cacgctgccg gtccaggtct
     4021 cctgagtatg caggttgaat tgctgttcgc gtgatgtgcc aaaggccacg cgtgtccctt
     4081 tgggaagctg gctggcccac tgcgccatcc tctctttatg ttgttccaga cgtgcctgca
     4141 tctctcgctt tttacccacc atttcgccga tgatagccgc agattgcaaa ttttcagcgt
     4201 aggtttcgtt gcgggactta agcagcagta ccggcgcgat ttgctgcaag gcgatgtaaa
     4261 cccccgcatg gcgactgctg tcggcaatga tcaggtctgg tttcagagcg gcaatggctt
     4321 ccaggctcgg ctgcgcgcgc gttccgacgg actgccacgg tttcaggtgc gcacgcactt
     4381 cgggcaggat gcgttttgca tcgttatcgt cggcaatacc gatcgggctg acgtccacgg
     4441 cggccagcgc atcggcgaac gagagttcca gcaccacaat ccgttgtggc gttttttcga
     4501 gtgtaaacgt gccgtgttcg tcctgaacca tggcggcaaa ggcgtggctg atcaccagca
     4561 gcaggcctgc aaaaagaaaa cggataaatg ccaacataat cacattccag ctaaaagccc
     4621 ggcaagccgg gcgttaacac atcagaactt caacgacccc tgcatataca gcgtgcgcgg
     4681 ctggcctgca tagatgcctt tgttgttgtc gtcataagag cggatgaagt agtcctggtc
     4741 gaagatgttt ttcacaccga atgccaggtt cagatctgcc atctgcgggc caaagtcata
     4801 cgccacgcgt gcaccccaga gcatgaagcc gggaatgcgg ccggtactgc cgtcggcgct
     4861 ctctttcacc gtattggcgt tatccgcaaa ctggctggac tggaaatcgc tgttcagatt
     4921 gaacgtccag tttcctggct tgtagtccac gcccagcgtg cctttatgtt tcggggagaa
     4981 tggtaccaga ttgccgtagg tgtcgccttt ctcgcggatt tccgcgttca catacgcata
     5041 gctggcgtag atggaaacgt tatcaagcgt tggcgttagc gtacccagat cgtaacgtgc
     5101 ctgcgtttcc agcccggtat ggcgcgtttt gccacgtgca gtgacggtgt cgttggtctg
     5161 gttggagtcg tactgattgt taaagttaat caggaacagc cccatttccg ccgtcagcgc
     5221 gccgtcgtcg tagcgggtac cgagttccca ggttcgcgct ttttccggtt ccacattgcc
     5281 gctttgcaca gccttgccaa tctggctgta ctgtacggtg ccgaacgagc cttcagtgtt
     5341 tgcataaaga ttccagctgt cagtcaggtg atagagcacg ttcaacgccg gaagcggtgc
     5401 gttatagctc acttcttcgt gcgtgcctgt gatggcgttg ttctggtatg actcgatatg
     5461 ttcgaaacgc atacccggcg tgatggtcca gttgccgatg tcgattttgt catccagata
     5521 ccaggcgtgc gcctcggtgc cggaacgcgt atcgcggtcg taagggcttg agccggacgg
     5581 caactgcccg ctgctggtgg cggtgtagta acgcatttca tgcgttgatt cattcacata
     5641 gcgatagccc acgcccactt cgtgcgcgga agggccgatc ataaagatct ggctgtagcg
     5701 tggctcaata ccgcgcaccc agtagttacg cggcgagagg gtgatgcgtt tgccttgctc
     5761 caggtagccg ctgcgcaggg tttgggtgta gaacccctga atgttgaatt tatgctggct
     5821 gtctggctgg aactggtagc ccaggctcgc cagcttgcga cgaccccaga agcggtcata
     5881 cgggcgggtg gattgccagc gatcggcgtc gtaatccgcg cgagacaggc caccgggcat
     5941 gtcggcttca ccgtcgtaat attgcagcag gctgttgaag gtgtgcacct catccggcgc
     6001 atatttgctt ttcagcatca ggtcgtcgat gcgggtggcg ctgtgctcgc gccagtcact
     6061 gccgcgcgtg ccggagtaga gcagcgcggt gccaaaaccg ttgtccgctg tgccgcccac
     6121 catcaggttg tgcgtctctt tcgggttgtt ttgtgaagag gttgggctga gctgaccttc
     6181 cacgcccgcc tcgataccaa agtcctgcgg aatggcacgg gtaacaaagt tcaccacgcc
     6241 gcccacgctc tgcggtccgt aacgcaccgc accaccaccg cgtaccacgt caatggcatc
     6301 catgttgccg agcgaaatgg gagccagtga aagctgcggc tgaccgtaag gggcgaaggg
     6361 gacggggatg ccgtccatca ggacggtcga gcggctggcg aggcgcgggt tcaggccccg
     6421 gatgccaaag ttcatcgcca ggtcgtggct gccggtgccg ttgttttccg gcgcgctgac
     6481 gccagggatg cggttaagta cctcacgcat ggtggttgcg ccggttttgg cgaaatcctc
     6541 acggcggatc acgtcacgcg cgccagcatg ttcaaatacg tcgttttcac gcgcatcacc
     6601 cagccagtcg ccgaccacgg tcagggcatc ttcttttggt gcgggcgcgg gctccagcgt
     6661 ccagctgtta tttcccagcg gttttacctg cagtccgctg ccgtccagca gttgttgcag
     6721 gccgctctcg acgtcgtaat cgccgtgcag gccgttgctc tgcttgccgc gcgtcaggct
     6781 ggcgtcaacc gagagggtaa atccgctgtg tgcggcatac tgattgagcg ctttatcgag
     6841 cgatcccggt gcgatattaa cctgtgcagc aaaagcggaa aacgagagac cggccagcgg
     6901 cagcaggctc aggcgaatgg cgttaaccaa aggtgttgtt ttacgaaaaa cgcgtaacgg
     6961 cgtcatacct tccccatcat catttttgtt gtgttcagct atgagtcgaa cgagaagggt
     7021 aaaaaggaca atcgaaataa gaattatttt ccttacagtg gtgaaatgtt tatccagtac
     7081 cgcgtaatag actgaatttt aacgggaagc gtttgcgcga taacgttcag gatcgcatcg
     7141 gtatttttca gcgggaacgt cccgctcagg cgcagcccgg caacggcggg atcgcagcgc
     7201 agcacgccgt tgcggtaacg ggttagcgtg gctatcacct cacccagcgg tttatcgctg
     7261 aagctcagga tgtccttcgt ccagcttgta ctctcgtcat ccagcggttt cactgcgcca
     7321 aactcagagg cgctgaactg caggctttca ccagcgttca cgatgcgttt ttgcgcgggg
     7381 gcactggcga gaagcacttc cacagcgtgc tgctgaacgt caagctgcgt gaaattatcc
     7441 tgctggcgga cggtaaattc tgtccctaaa gcagtgagct ggccctgacg ggtcaggaca
     7501 cggaaggggc gttgcagggc atctttcgcg gtagtaatgg cgatttcacc gtaccagagc
     7561 cggacggtgc gctgatgcgc atcaaaacgc acatccgccg cgctttgggt attcagcgtg
     7621 agcagggagc catcttccag ttgctgacgg ctgactgtgc ctttggcggt gcggtaatct
     7681 gcccgcagac cttcgccggt ttccgactgc cagagctgcc agcctccgcc agcgccgagc
     7741 aacagcagta atcctttcat cacgtgacgg cgggtgaggc gggtatcgtg caacgcccgg
     7801 ctggcaacgt cgccaggcac accgccaagc tggttgcgca ggttttcaac ctgctgccag
     7861 gcccactggt tatcctgatc ctgttcatac cactgttgcc agcgcgcttc ctgttgtggg
     7921 ctgacgcgct cgccgcttag cacggcatac cagtgggaag ctgaacgcag cgcctgacgg
     7981 cgggaatcgg ttaacaaagg attcataacc catactccag acggaacagc aggcagtgct
     8041 cgacggcttt cgccacgtat tttttcacgg agctgatgga aacaccgagt ttgtgcgcaa
     8101 tctcgctgta tgtcagacca tccagttgcg aaagcagaaa cgcttcacgt gttttgccgt
     8161 ttagcccgtc cagcatgctg tcgaggagtt gtagggtctc gagttggctt tcgcgttcct
     8221 caggtgaagg cgctcccccc tccggcataa gcgccagcat ctccagatac gctttttcca
     8281 gcgcgtttcg gcgaaacagg tccaccatca cgcgtttggc gatagtgcag aggaaggagc
     8341 gaggatcgcg gatcgtcgag agcgtttcgc tgaccattac ccgcaaaaaa gtgtcctggg
     8401 caatgtcatc tgcatcaaaa gcagactgga gtttgcgcgt cagccagctt ttcaaccagc
     8461 cgtgatgtgt gccataaagc gactcgaacg ttaaggaagc tgtggtagtg gcgcggtcag
     8521 acatgcggag tgcatcaaaa gttaattatc acgtagtcat attaatatga gaatggttat
     8581 cattacaatt ggaaataaaa ttgtttccaa tagacatttt taacatgttg tttttctaag
     8641 tgttataagg taggtataaa atgggatgga gcctctgctt ctgacatgtg tcggtcagaa
     8701 tgactcatga tgtggtctgc tattattgac atcctcactg ccctaaagga tggggatttc
     8761 ggtaatgatc ttacccagca atagtggaca cgcggctaag tgagtaaact ctcagtcaga
     8821 ggtgactcac aagacaaaac agtttcaacc agtaaaaaaa cgtaaacacc attcgcatga
     8881 atttcgtagt taagatctga agcttgcaga atgcatcggt gttactgccg gagtccgtga
     8941 acttagtctg catgaatcac cacagcttta catctgtcgc agtaaacagc aaaatcagca
     9001 aacttactta attatatcga gtgcgattac aatcgctggc gatggtacag ttggtgtggc
     9061 ggtctcagtc cggaacaatt tgaaaatcat aatctcactt aaaacggcat ccattttaca
     9121 aaagatggcc gtctgtgtat ttgtaatgaa taccttctac atgtttagag tgcataatcc
     9181 acgacaaggc gatatcctaa aaattagcta gcaggcaact ttgatggcat agataatgtt
     9241 tttagtaaaa aagagttgac tgaatataat acagcctctt cctacataag aaggaatgtg
     9301 ctcacaaaaa aaaaccatta gtctgcttcc tgttcttaca ataatcagta ttatgtattt
     9361 tatttatata gcaaaatatg cttgttacac ctgtcataat taggcatggt aaaattattg
     9421 actgaaccct gggggagaaa gatgcacagt gattattata atatggtttt tggtgaaaaa
     9481 ttggccaata ttttatatga agctaactct caattttttt acgagagaaa tgtcatagaa
     9541 gaggcagtca acgctttatt ctgtgagcgt gaaataataa acaacaagaa cataataaag
     9601 aagctgatgt tctttttgtc agatgttaat cacaccaaga aagatgttgt tcagagcgca
     9661 cttaatatta tcattgacat tacatcaggt gatatttgag attttacata aaagataatc
     9721 tctcaaggag tcttatctga aaacgaaata tatagtccct ctcgttttgt aatatcgatt
     9781 ggctttgttg aatcggttac gtaccccgga gccggtcata ttttcaggta atacacacgc
     9841 tttcagacat ttcggctttc gtcatttttg tatcatgggc atagcttctg ctacctgacc
     9901 atcataatca cgcagcttca gtgaagcagt gaccacctgt ttaacccggt gtatcgttat
     9961 gatcttatcc agcaattgaa ccgccccggg tttcctggag agtgttttat ctgtgaactc
    10021 aggctgccag atcatcgttt ccgatggaag cataataagc tttttctgct tctgccggtg
    10081 ggatatggcc ctgcctttcc agcaatcgtc gattgttata ccagtccacc cacgtgagtg
    10141 tggtcagctc atcatactga cacgtgcatt acccctaccg cgataatgca accgtacaat
    10201 atagggcgtt tcctaaacgc agccctcatc actccaatcc aacaagacac agcatttttg
    10261 atcacgaaga aagacaaata atttccgtaa atgtttccgt tgttacaaat aacaacagtg
    10321 ttttacattt ctttggcctc aggcccgcgc atgttgccat tcgatgtcat tttcctgact
    10381 cgtttcttct ttatggtgta gtgtgatctt cactttatag atgctaacaa tatgaaaaga
    10441 aaaattattc ccgtgctaat cggttgtacg ctctctttct ctgccctggc ggcacaacct
    10501 acggctgagc gctatgtcgt cagttttcca gaaggcacgc acgtgaacta cgccggcgca
    10561 tttgccagtg cattcccgaa cggccttccg gttgggatag gttctggcct gctgttcacc
    10621 ggtaaacagg gcgatgccct gacattcgca accattaccg atcgcggtcc gaacgcggat
    10681 tcaccgaaag aggggaaaaa cgaaactaaa attttcgtta cgccagattt cgcgccgctg
    10741 ctgatgacga ttcgtgtaca aaacggcaaa gcggaggcca tcgatccccg tcctctgcat
    10801 gacgataaag gcgcgatcaa cggtctgccg ctggcaagcg acgtgattgg ctccaccaat
    10861 gaagtggcct tcagcgacac gttacataga ctgaaggggg ataatcgcgg gctggatacg
    10921 gaagggatca ctccggatgg taaaggaggt tactggctgt gcgatgagta tggcccgttc
    10981 ctgattaaca tcgacagtaa agggaaaatc ctggcaatcc acggtccgca ggcggcggaa
    11041 ggggaaaaag cgattgcggg cggtttgcca aatatcctca aatggcgtca ggcgaaccgc
    11101 ggctttgaag gcctcacccg tatgccggac gggcgtatta ttgtcgccgt gcaaagtacg
    11161 ctggatatcg acgctaagag caagaaaaag gcgctgttta cgcgtctggt gagcttcgat
    11221 ccggcaagcg gaaaaaccgc gatgtacggt tatcctatcg acagcgcggc ctacagcaaa
    11281 aacagcgacg ctaaaatcgg agacatcgtg gcgctcgata accagcacat cctgctgatc
    11341 gaacagggaa gagataaaaa caacagaatg cgtaacctga tttacgaggt cgatctcaat
    11401 aaggcgagcg acctgtcagg cttcgacaag ccgggtgagt atccggagtt tgatgatgag
    11461 aaaaccctgt cacagcgcgg cattaccctt gcgcagaaaa cgcaggttgt tgatctgcgc
    11521 tccttgggct ggcagcagga gaaggctgaa gggttggcgc tgatcgacag caaaacgctg
    11581 gcggtggcga acgataacga ctttggcgtg aaggtggcga tgcaacatcc ggtcgagggc
    11641 aagacattca aggattatcg ggtgaacgcg gaaggaaagc tgacgcttga cgacaagcag
    11701 gttgaaacga ccctcagagt gaagccactg gagaaaccgg agtctgacag tgaactgtgg
    11761 attgtgacgc tgccggaagc gttgaaataa gtttataagg tacggacagc agtatcgctt
    11821 agtttttcaa attcatgtat gtgaacaata ttggggttcc ggcgtagacc cccaatgaaa
    11881 gcgtcaccac gtgaaaacat gcctgcacgg tttacacgtc atcccatggt ggcagccggt
    11941 taactttcct gcgccaccag tggaaaaagg ccataagcag tccgaacaaa agtaagcgta
    12001 cagcgagggc cgtattgacg gggatgtgtt attcagctgg cagtgctatg cgccacggaa
    12061 gcagttcgct gacccggttg accggccagt ctgctatgac gccaagcaca tggcgaaggt
    12121 agctttctgg atccacgtca ttcagtttgc acgtcccgat caggctgtac agtagcgctc
    12181 cccgctcacc accatggcca gagccgaaga acagggtctt catcttttca cgcaaccagc
    12241 tttccaggga tttcaacagc ggtttcgttt ttcgctgacg ttcagcaagc cgctgctctg
    12301 ccggcattcc ccttatatcc gcctctatgg cgtacaactg accgatctgc tccagggctt
    12361 cttccgtcag tgctgacggg atgcggacgt gcacatcgtg gatctttcgg cgggcatgag
    12421 cccagcaggc agcttccgtt atcccaccat tgcgatacag ctcgttgaac ccggcgtacg
    12481 catccgcttg cagcacaccg ctgaagcaag caagatgagt ctgcggatgg atgctttttc
    12541 tgtccgggct gtaagcgaac cacactgcag gtgccaacgc tgacccggca ttgcggtcat
    12601 cacgaacata cgcccacaac cgcccggtct tcgtcttctt attacccggc agcagtacct
    12661 ggaccggggt atcatcggca tggagtttgc cgtcagtcat gacatagcca tgaagcgcct
    12721 cttccagcgg agacagcagc cggcagcatg catccaccca gcccgacagc agtgaacggc
    12781 tcagctccac accttgccgg ccgtatattt ctgactggca atacagcggg gtgtgctctg
    12841 catacttcga ggtcagcacg cgggccagca gccccggtcc ggcgataccc cgctcgatgg
    12901 gccgcgaagg tgcaggtgcc tgcacgatgg tatcgcactg agtacaggca tgtttttccc
    12961 gtaccgtccg gataacccgg aaggcgctac gcatcaactc cagctgttcg gcggtatcct
    13021 cgcccagata gctcagtgaa ccgccgcagt tcgggcagca cggcgccgca ggcaacagtc
    13081 gcttttcgtc acggggtagt gattcaggga acggcttacg ggtgcgggtc tgacgcaacg
    13141 gacgctgtac tgccgggtca tacaccctac cagtcagcgt atcgctctct ttctgaagcc
    13201 ggttcagatc ggcttccatt tgtgcgatac ggcgggagac tttttcggaa cgactgccga
    13261 agttcatccg gcggagttta tccagctgcg cctgcagatg gtctatttcg cgctcccggt
    13321 tgctcagctt ttcctgcagg gcgtggatca gcgcttcctg ttcggccagg cgctgtttca
    13381 gcaggaagat gtcgtcagaa gagatgtcgt tcataagccc gtattttacc gggcttattc
    13441 tgtgacaacc aggataaaga gatttacagc atggtcaggg aggtcagcag ccgcttgggc
    13501 tgtcgccagt cgataccttc cagcagcatc gccagctgcg cctgcgtaag gaacactttg
    13561 ccatcacggg ctgacggcca ggcgaagcgc ccacgctcca gccgtttggt caggaggcac
    13621 agtccgtcgc cggtggacca cagcagttta acctgactgc cgctgcggcc ccggaaaatg
    13681 aaaatatggc cggacatggg atcgtctttc agcgccgttt gtactttcgc agccaggccg
    13741 ttgaagctat ttctcatatc ggtgataccg gcaaccagcc aaattttggt cccggaaggt
    13801 aacgggatca tcgcttcagt tcctgtatca gcagagtcag gagcttttcg ctgacattgc
    13861 cattgaagcg gagcgtcccg tgccggaacg ttacctcaca gctgatactg agggtttccg
    13921 ggtcctctgc gagcgattct ggctgttcgg cagctgcatc gagagtcaca ggaagtagct
    13981 gggggctctc tgaagaaggt aatagcagct ttccctcgcg ccattgttgt cgccatttga
    14041 acaacagatt ggcgttaatg ccattttcaa gagcaagttt tgagatggat atcccgggtt
    14101 cacaggaggc agcaacgagc agctgtttaa attcgggagg ataattaggg cagccttttc
    14161 gcctgccggg agtcacattt ttctgcatat ctgacacttt ggttcccact acttatttgg
    14221 tggacaccac tttgtctaat tcgtcagatt ctgaccagac ggttcaggct gtacgcttac
    14281 cactatttta tccctgttga atttggttaa gccggtgcag acgcgccggg aaacgcacac
    14341 ctgaaccggc acaataaaat acaatacaac cccctgttac tggagatacg aatggaatga
    14401 cgaggcagcc tgtcagtcac agggggctgt tggcataaaa tcaacggaaa ggccaccaac
    14461 accggaatta agctccacag tccccgcact ggcaatccat tcccgggaaa ggcatcaccg
    14521 caaactgctc cggaggcaac cattacagcc tctgtaacgg attatcagcc ctggcatctt
    14581 ccgacggcac ctcctgccgc ccccacgccc tgctgtatac cccggtaccg cagcgtgggc
    14641 agcacttttc cccctcataa tcttcgtcac acatcacaca aaaccacttt ctcaccttca
    14701 ccgtataatc cggaaccgtc atgccctgca gatgcaaacg acgggcctct ttctctgccg
    14761 ggtcaagcca ggtacatcgc agcaggattt tttcagcgac agtcatctgg tcatgttcaa
    14821 accacggtgg ttgtccgtca ttgccccgct gaagtgttaa cgggcatcca caggacacac
    14881 agcacaaaac gtcctgtcgg ttgtgcttcg cagcttcttt cgccgtaaca aaatggcctt
    14941 tgctgtcatt cgccatataa cagttcagaa ttcgcatatt tcctcctgag ttgtccgggg
    15001 aatactgaat cctccggtct ggcagtgtgt gcagtactgc tccccataat aatcgtggtg
    15061 acattgtctg cagtgccagc tggctttacg caccacgggt aaggcatccg gtacgaattg
    15121 ctgcagacgt ttaatcaact gtatttctct gcgctccggc ctgacataag ggcactgttg
    15181 accgtgctct gtcagcctgt cgtcagtgtg ttcaaaccag ggaagttcag tttcgtattg
    15241 cggatggtat ctgagtgcac tgccacacaa gtggcaggtg tagttagcat aaggtgcggc
    15301 ctgtgcagta cgggcgcccg tcagacgtcc gttgccatca agagcgataa aggattttgc
    15361 gtacatagtc atatacctca gccgccagac gacacgcagg caacagccgt cccggtacgg
    15421 gcagcgtggt cagggtgtga atggcggttc agttaaaatc tggactggag tttgggtaaa
    15481 gcaggctggt tgctgttaca gcactgtggt tgtcacacaa tggaacactg acgtaaaaaa
    15541 cagtcagtgg gcgagtggat acatcgttgc cgccagacaa caacccatac ttttggtttg
    15601 ccggatattg gcgcgccagt cgtgctcaac tccggctaca gccaaaattg cgctcaccgg
    15661 tgcagtgagc tttggtatgc tccttcgcca gatagtcagc acgttccagc acttgctgaa
    15721 agccggtgtc atcattacgc gccagccaca ccgccggcca ggccggaaaa tgcaccagcg
    15781 tggcatggca cccgacatcc actcccaggg cactgcacca cgcctgttta atcatcccgg
    15841 ccagagactc cggagcgcgg taatcaccgg cacgacacca ggtatcccgg ttgaccagca
    15901 gcatcaggtg atagtgtttt ttacctttgc actccccaaa ctcccgggcc cagacgtaat
    15961 gcagggttgt gggatgcacg cgtttacctt cccgatgctt acgtttctgg taagcgtcga
    16021 ttcgggcttt cagggcattg atgaagcggg atatcacagc tgcgtccgtt gctgccggta
    16081 catccgggag acgcaggtca acccgcaatg ccgtcaggcg gggatgaaca ttcagtgcgt
    16141 gccgcaccgt ctcacgaata cgttgctgcc agaaggggtt gtatttgtag gtcatggtta
    16201 aatctccgta tggttcatac ggaatagcca cgtcgtaaaa aatacgcaga gtccctgaag
    16261 tgacctccgg caggacactg tctcaggcac tctgtgataa cccgaacggt cgtctccgga
    16321 ctgacggttg aattttcagc gtcgtttttt aatgtaaaaa accggttacg ggtaaggctg
    16381 tgaggaggga gtgatggtga tacgcaaaaa gaagtgcagg gactgtggaa acgcgattac
    16441 tcataataca gtgtgttgcc cgtattgtgg ttctgtcgac cccttcggct actaccggaa
    16501 tacagaccgt atcgttacca tactgctggc gctgattatt gtggtcctgc tgactactgt
    16561 cagcgtcagt gtgtgtatac tgtgtagctg gtgagataac ggttcatgta tcccctgagc
    16621 tgacagtgta ccgtgtatat taagcgtaac cgacaggttc tccttcatac catattaaat
    16681 tttccaggga ttgccgctgc cttatttcgt cccatacagg aaaactcatc tgggtttctg
    16741 acaaatacgc gaaactcaca gcccctcaat atcaaccaca cgttgtaagc cggtaatacc
    16801 tgaaaatcag cctattaccg cccacgcctc cggcaccatt cccttttgat ttcgaattct
    16861 ttgttgtcgc tataccgctt aatgttcccg gtcctccggt gcagataaca ccggagtcat
    16921 cgtagcgctg cttcaatatt caggtgacgt atttccagac ggaagccggc gcgcgatcgt
    16981 aaagtttgtt cattgtcagt tctgccagcc ggttgtcaac ggcagagtta aaggcttcca
    17041 gctccgcaag ggtaagttta taacgcgtgt gggaattcac ttttcccgcg tctcctgacg
    17101 tattacgggc tgccacttac ctggtgtccc gcaatacagc cttagtgttc cgttatcggg
    17161 gatccggacg caccgcaaca accggggaag tatttctggt ttagagcagt gtcaagaggg
    17221 atttctcagc ccctcactca ccggctcagt ctcagggcag gagcattaat acgctcagtt
    17281 catgtcttat acaggaatgg gcacaggggg agctggcgtg tcactgctga ttttacgcat
    17341 cagcgttcat gtatctgcac tctgatacat gaacgattca cagcgctctg ttaccggaga
    17401 gatttactct cttagcttac tctggcaaat cctttacgtt actctctgat gacttcttat
    17461 atttataata ccaatcagac agccttatcc catcggtgat atcagtctcc tcctcgccag
    17521 gaacgggctg actcactgta actacctccg aaaacaactc tgcaattatc agaacgcctg
    17581 cttctctccc tgtcctcacg aaaactatcc cctctttatc gcgcgtgcgt gcggaagcat
    17641 cttttcgcaa caaccacccg gtataccggt acggctcagc caccgcaacc tccccgttta
    17701 tctcctggcg gtcacattcc cgattatttt ttacgtttct ccccggttgt tatgccggtg
    17761 aaggtggcgc gctgttttca tgaccacacc ggctggttta acaacatccg gaggaacatt
    17821 ctcatggcta ccccagtttc actgatggat gaccagatgg tcgacatggc atttatcact
    17881 caactgaccg gcctgacaga taagtggttt tacaggctca tcagggatgg ggcctttccg
    17941 gctcccatca agctgggccg cagctcccgc tggctgaaaa gtgaagtgga agcctggcta
    18001 caggcgcgta ttgcacagcc ccgcccgtaa tttctgaccg ttatccgttc acccgcagca
    18061 gacgtaatcc ccggcctgcc ggcggcattc tgctgcctgt tatatccccg tgaggaatat
    18121 gaaaatgaaa caacagtatc agacccgcta cgaatggctc cacgaaagct accagaaatg
    18181 gctgaccggc ttcacccggc acgccgtatc ctggggcgtg tgtcatccga atatctacta
    18241 cttccataat ctgacgcccg gttgggtgtc attcaatggt gaaaaaccgg agattgccat
    18301 cgtaccccag agcctgcacc ggctgattta tggccctgac aaacgggcca cgccgcccct
    18361 ggatgatgat ctgatagtga atttatgcac cagtgaacat ctgctggttc atcatccgat
    18421 gctggaaggc attctcctgt ctgaatgtga acgtctgagg cagcgttctc tggcaaataa
    18481 actgatcagc ctcttccgtc agtttggtgg cacggagttg cgcctcaaac tggtctggct
    18541 ttgctggctt gatttaatga ccggaaacag ccttgaagac tggaaagaga acctgaaacg
    18601 gaaatcagaa aaagagctgg aggaatggat catcaaccgt cagaggcaga gcgcagcact
    18661 gacggatctg atggatcagt acgtgctcct ggcataccgc acaacggttg acgatagccg
    18721 caactgatgc cggttgcttc cggaaggtgt gacaaaatac ggaaatgatg atgctcccgg
    18781 cccccatgct cacctgcaga gcgtgttcgt cgtcatcata ctgagccatg acgggcgtct
    18841 taagggcatc ctgtcattgc tgagcaggca acaccaccag aggagccacg gacagggatg
    18901 ttctttacag cccgatacac gccaggttct cagcagactg aatgtgcagg tgcggttatt
    18961 caccagaaat ggcatgctgc ggtacatacc catcctggtg acaatatgta cgtggcgaca
    19021 gcgatcccgg cactgtggaa gagactcact cagcctgcag gatattcttt ccggcatccg
    19081 ggaatgtccg cctgaatgca aacaggatga tatttgaatc cgtaatactg ttctttcatc
    19141 ataaataatt tatgcagata cagttaaccg ttacagtagc cggtttgttt taccgggaaa
    19201 taatatccgt cagactgata ccggaacata tctgaaacac gttatgatgt tttgttatca
    19261 gaaatgttgt atattcttat ccgtggcgac agtttaatgc cctctggtat cacctgataa
    19321 tgtatatcct gcgatgattc gttatattta cgggacacgc ctcttttcat tgtgctcctt
    19381 ttcagacttc attttccgta agtgttcccc ggcataaagg aggtaccttt ctggcgttta
    19441 taactctctt tatcggtgac gccggtaata cagggaatac cacaccgaca aacgaggtat
    19501 taacagacga tatttcagtg tccataattt ttctgtccgg ttaaataacg tcagtctgct
    19561 gccctctgac tgtaatcatc aaagccggaa tgcataccgg gttacaacgt aaaaaaagtg
    19621 atgctggccc ccggtgcagc tggcgggcga aacatgttta cctttcaata ccccctgtct
    19681 gcagtctcca ctcttccatc ctcttaagct acgtcggcca catgagtgca cttccatgat
    19741 aacaggtatt cctgtcagca taacgaagcc ggttaccttc ccttcctcct gcatttcctg
    19801 tcagaatgac tatacagcgc gcagattgcc tttttattga ccatcttaat ataccgttat
    19861 aaacttcttt ttatcatatt attatcacct tattatgttt aatttttaag cagtcggaga
    19921 aagaggatgg ttcagaaaat tttgtcggat aaggttatga atgaaagaac aaatgcgtat
    19981 tactcttatt atcttggaga gcgtaatatc tccgtactgc cccttaatgt ttatgatccc
    20041 ccggaacgtt ttatcgctta cataaaaaaa aacagagaaa atctgaacat cacactttca
    20101 gattttgaac ttgaacaaat aatttctggt atgcgtctga aggccctggc cttcctggtc
    20161 cccctggaaa aaatatcctg gatcgcgggc agtgaacgcg catgcttatt ttcctggtat
    20221 ctgttgatgc agtttatcca gaataacagg gcaaaaataa gcgcagactt gcttcaaaag
    20281 aataaactgt atcttaaaga agagtatctg gaagggaatg ccttcccgtc ggactcatcg
    20341 acacagttca gacaaatact cagagttctc gatattcttt ctgataagaa tttgcgggat
    20401 gagtggataa tccagaccaa agacagatgg atgcgggcat ttaaatcaaa gagtcctttc
    20461 agttacctcc tcccggagaa cgaacatgaa tgcatatgga catggaatta tttgaaggga
    20521 aaaaatattg cactggaaaa actggccagt tttcctggtt ctgctgatat ttaccacgca
    20581 attcaccttt catttgacat atgggttacc tgtccactca cctcacctga cgatataaaa
    20641 aatttcagaa acagtttcaa taaggccaag gcgcagcgca agtacaaaaa aatgcaggaa
    20701 gataaagtca atgtacagtt ttttcttgac gcagaaacca gggcgcagct caaagaatta
    20761 tcgagggtca gaagactcag taccggcgaa atgctgcatg acctgattgt tgaagagtat
    20821 aaaaggtacc gacattccag ataatttcag acatatatta tctccgtgag tcccccgcca
    20881 cctttccggt gtgcgggggt tttgtctttt ttcaccggga atacatgtat gaatccgtct
    20941 gatgccattg aggcaattga aaaaccgctc tcctccctgc cttactcact ttcccgtcac
    21001 atcctggaac atctgcgcaa actcaccagt cacgaacccg tgattggcat tatgggtaaa
    21061 agcggggccg gtaaatcctc actctgtaat gcactgtttc agggggaggt cactccggtc
    21121 agtgatgttc acgccggcac ccgggaagtg cagcgtttcc gtctgagtgg ccatggtcac
    21181 agcatggtta tcactgacct gcccggggtg ggcgagagcc gggacagaga tgcagagtat
    21241 gaagccctgt accgtgacat tctgcctgaa cttgacctgg tactgtggct gattaaagcc
    21301 gatgaccgtg ccctgtctgt ggatgagtat ttctggcgac acatcctgca ccggggacat
    21361 cagcaggtgc tgtttgtggt gacgcaggcc gacaaaacgg agccctgcca tgaatgggat
    21421 atggccggta ttcagccttc tcccgcacag gcacagaata ttcgcgaaaa aacggaggcg
    21481 gtattccgtc tgttccggcc cgtacatccg gttgttgccg tatcggcccg caccggctgg
    21541 gaactggata cgctggtcag tgcgctaatg acagcacttc ccgaccatgc cgccagtccc
    21601 ctgatgaccc gcctgcagga cgagctgcgc acggaatctg tccggggtca ggcccgtgaa
    21661 cagtttaccg gtgcggtgga ccggatattt gacacggcgg agagcgtctg tgttgcctct
    21721 gttgcccgta cggttctgcg tgccgtccgt gacacggtgg tctctgttgc ccgcgctgta
    21781 tggaactgga ttttcttctg aacagtctgc cagggaaatg cctgataaca ttacgttaac
    21841 caactgaaaa catgacacaa acccctcata ctcctcctgt ttctcttgcg tgaccgcctt
    21901 gtcgttaata gaataaaact atcgataaaa cagatatcga tcgttgctat cgatcgttta
    21961 tagtggttaa tggtctgcga aaaggcagct gaatctcttc atcatgcaga acggaattgc
    22021 acacaacgga ctgatacttc tctggcggat gagagagggg aagcatttat gtccgggaaa
    22081 aaccacttta tctgaccatg ctgttttgta cctgccggta tccacttttg tgggtaccgg
    22141 cttttttatt caccctctgt aaggaaaagc tgatgaaacg acatctgaac accagctaca
    22201 ggctggtatg gaatcacatt acgggcaccc tggtggtggc ttccgaactg gcccgctcac
    22261 ggggaaaacg cgccggtgtg gcggttgtgc tgtctcttgc tgctgtcaca tcagtcccgg
    22321 cactggctgc tgacacgatt gtacaggcgg gagaaaccgt gaacggcgga acactgacaa
    22381 atcatgacaa ccagattgtt ctcggtacgg ccaacggaat gaccatcagt agcggtctgg
    22441 agtatgggcc ggataacgag gccaataccg gcgggcaatg gatacaaaat ggcggtatcg
    22501 ccaacaacac tactgtcacc ggtggtggtc ttcagagagt gaatgccgga ggaagcgttt
    22561 cagacacggt tatcagtgcc ggaggcggac agagccttca ggggcaggca gtgaatacca
    22621 ctctgaacgg cggtgagcag tgggtacatg aaggcgggat tgcaacgggt accgtcatta
    22681 atgagaaggg ctggcagacc gtcaaatccg gcgcaatggc aaccgacacg gttgtgaata
    22741 ccggcgcgga agggggacca gatgcagaaa atggtgatac cgggcagttt gttcgcggaa
    22801 atgccgtacg taccactatc aatgaaaatg gtcgtcagat tgtggctgct gaaggaacag
    22861 caaataccac tgtggtttat gccggcggcg accagacggt acacgggcat gcgctggata
    22921 ccacactgaa tggcggttac cagtatgtgc acaacggcgg tacggcgtct ggcactgttg
    22981 taaacagtga cggctggcag attatcaagg aaggtggtct ggcggatttc accaccgtta
    23041 accagaaagg caaactgcag gtgaacgccg gtggtaccgc cacacatgtc accctgaaac
    23101 agggtggagc actggttacc agtactgcgg caacggttct tggcagcaac cgtctgggca
    23161 atttcacggt ggaaaacggt aaggctgacg gagttgttct ggagtccggc ggtcgcctgg
    23221 atgtactgga aggccattca gcgcagaaaa cacgggtgga tgacggcgga accctggcag
    23281 tgtctgccgg tggtaaggca acaggtgtca ccatgacatc cggtggtgcc ctgattgcag
    23341 acagtggtgc cactgttgag gggaccaatg ccagcggtaa gttcagtatt gatggcacat
    23401 ccggtcaggc cagcggactg ctgctggaaa atggcggcag ctttacggtt aatgccggag
    23461 gactggccag caacaccact gtcggacatc gtggaacact gacgctggct gccgggggaa
    23521 gtctgagtgg cagaacacag ctcagtaaag gtgccagcat ggtactgaat ggcgatgtgg
    23581 tcagtaccgg cgatattgtt aacgcagggg agattcgctt tgataatcag acgacaccgg
    23641 atgccgcgct gagccgtgct gttgcaaaag gcgactcccc ggtaacgttc cataaactga
    23701 ccaccagtaa cctcaccggt cagggtggca ccatcaatat gcgtgttcgc cttgatggca
    23761 gcaatacctc tgaccagctg gtgattaatg gtggtcaggc aaccggcaaa acctggcttg
    23821 cgtttacaaa tgtcggaaac agtaacctcg gggtggcaac ctccggacag ggtatccggg
    23881 ttgtggatgc acagaatggc gccaccacag aagaaggtgc gtttgccctg agtcgcccgc
    23941 ttcaggccgg cgcctttaac tacaccctga accgtgacag cgatgaagac tggtacctgc
    24001 gcagtgaaaa tgcttatcgt gctgaagtcc ccctgtatac atccatgctg acacaggcaa
    24061 tggactatga ccggattctg gcaggctccc gcagccatca gaccggtgta aacggtgaaa
    24121 ataacagcgt ccgtctcagc attcagggcg gtcatctcgg tcacgataac aacggcggta
    24181 ttgcccgtgg agccacgccg gaaagcagcg gcagctatgg cttcgtccgt ctggagggtg
    24241 acctgctgag aacagaggtt gccggtatgt ctctgacgac aggggtgtat ggtgccgcag
    24301 gccattcttc cgttgatgtt aaggatgatg acggttcccg cgccggcacg gtccgggatg
    24361 atgccggcag cctgggcgga tacctgaatc tgacacacac gtcctccggc ctgtgggctg
    24421 acattgtggc acagggaacc cgccacagca tgaaagcgtc atcggacaat aacgacttcc
    24481 gtgcccgggg ctggggctgg ctgggctcac tggaaaccgg tctgcccttc agtatcactg
    24541 acaacctgat gctggagcca caactgcact atacctggca gggacttacc ctggatgacg
    24601 gccaggataa cgccggttat gtgaagttcg ggcatggcag tgcacaacat gtgcgtgccg
    24661 gtttccgtct gggcagccac aacgatatga gctttggtga aggcacctca tcccgtgaca
    24721 ctctgcgcga cagtacaaaa caccgtgtga gtgaactgcc ggtgaactgg tgggtacagc
    24781 cttctgttat ccgcactttc agctcccggg gtgacatgag catggggaca gccgccgccg
    24841 gcagtaacat gacgttctca ccgtcccgga atggcacgtc actggacctg caggccggac
    24901 tggaagcccg tgtccgggaa aatatcaccc tgggcgttca ggccggttat gcccacagcg
    24961 tcagcggcag cagcgctgaa ggttataacg gtcaggccac gctgaatgtg actttttgat
    25021 aatcaggtca ctctccttca ggccccggtc atcatgaccg gggcttttta ctttcaggga
    25081 gcaacagata tgccgggttg tacatcacgt ttattgcccg aaggcccttt ctcacgcgaa
    25141 caggctgttg ccgtcaaaac agcttaccgc aatgtgttta ctgaagatga ccagggaaca
    25201 tattcccggc tggttatccg taatgctgaa ggtcagttgc gctggtgatg ccggaacaca
    25261 gcttaatact cagctcgcca gttaagggct tctcagacaa taaacgtcat tcatttcatc
    25321 tgtcaggccg cgtcttctcc gggagacgca gctttttcat ttattacacc agtaaatcgt
    25381 aaccaccgat aaggagcaaa ttatgcgact agccagtcgt tttggttatg cgaaccagat
    25441 acgccgtgac cgtccgctga cacacgaaga actgatgcac tatgttccca gtattttcgg
    25501 tgaagaccgg catacttccc gcagtaaacg atatgcgtac attcccacca tcaccgtact
    25561 ggaaagcctg cagcaggaag gttttcagcc attcttcgcc tgccagaccc gcgtgcgcga
    25621 cccgggccgc cggggataca caaaacacat gctgcgtctg cggcgggccg gagagataaa
    25681 cggagaacat gtccctgaaa ttattctgct caactctcat gacggtacct ccagctacca
    25741 gatgctgccg ggttacttca gattcgtctg ccagaatggc tgcgtctgcg gtcagtctct
    25801 gggggaagtg cgtgttccac accggggaaa tgtggtggag aaagttatcg aaggggctta
    25861 cgaagtggtg ggggtttttg accggattga ggaaaagcgt gatgccatgc agtcgctggt
    25921 cctgccgcca ccggcacgcc aggcgctggc acaggcggca ctgacttacc gttatggtga
    25981 cgaacatcag ccagtcacca ccgctgacat tctgacacca cgacgcaggg aggattacgg
    26041 taaagacctg tggagcgcat atcagaccat ccaggagaat atgctgaaag gcgggatttc
    26101 cggccgcagt gcaaaaggaa aacgtatcca cacccgtgcc attcacaaca tcgacaccga
    26161 tattaagctc aaccgcgcat tgtgggtaat ggcagaaacg ctgctggaga gcctgcgctg
    26221 atgcagcatg tccctgaagg cgtgattcag gcaccagaat cacccgacgc cccggaggcg
    26281 ctgccggggt gtcgttccat ttctgatgat gacctgtgcg cctggtgtac ccgtctgctt
    26341 taccgtcccg gagaaatcag tctgtgcaga ctgagtatac aggcaatggc atctggccat
    26401 ccgtctgtga ccggaacggt tacgcgtacg gctgtccgga atttcagccg aatatcattc
    26461 atccctgata ttaccgggtc atcacggtca gtgatgaacg tgatgttgcc agctcccgac
    26521 ctttactccc tctcatttat tcacattaca aggatttcat acatgaaaac attgtctcag
    26581 aacaccaccg cttcggcctg tgcaccggag actggcctgc aacaactggt tgccactccc
    26641 gtccctgatg aacagcgcat cagcttctgg ccgcagcatt ttggcctcat tccacagtgg
    26701 gtcaccctgg aaccccgtgt cttcggctgg atggaccgtc tgtgtgaaga ctactgcggt
    26761 ggtatctgga atctgtacac cctgaacaac ggcggggcat ttatggcacc cgaaccggat
    26821 gacgatgatg acgaaacatg ggtactgttc aatgccatga acggtaaccg cgctgaaatg
    26881 agcccggaag ccgccggcat tgctgcctgt ctgatgacgt acagtcatca tgcctgtcgt
    26941 acggagtgtt atgccatgac ggtccattat taccggctgc gggattacgc cctgcagcat
    27001 ccggaatgca gcgccattat gcgcatcatc gactgaatgg aggcagggac aatgcagcag
    27061 ctttcctttc tgcccggaaa catgacgccc ggcgagcgca gtctcattct gcgggccctg
    27121 caaaccctgg accgccatct tcatgaaccc ggcgtggcct tcacctccac ccgtgcggca
    27181 cgggaatggc tgattctgaa catggcggga ctggagcggg aagagttccg ggtgctgtat
    27241 ctgaacaacc agaatcagct gattgccggt gaaaccctct tcaccggcac catcaaccgt
    27301 acggaagttc atccccggga agtgattaaa cgcgccctgt accacaatgc cgctgccgtg
    27361 gtgctggcgc acaatcaccc gtccggtgaa gtcacaccca gtaaggcaga ccggcttatc
    27421 accgaacgtc tggtacaggc actgggcctg gtggatatcc gggtgccgga ccatctgata
    27481 gtcggtggca accaggtttt ctcctttgcc gaacatggtc tgctttaacc cgtcacaacc
    27541 acatcacacc tgttttcact tttatcttct gtcttcagag gtatcacatc atgagaatca
    27601 tcacccgtgg tgaagccatg cgtattcacc aacagcatcc tgcatcccgt ctttttccgt
    27661 tctgtaccgg taagtatcgc tggcacggca gtgctgaagc gtatactggt cgtgaagtgc
    27721 aggatattcc cggcgttctt gccgtgtttg cagaacgccg taaggacagt tttggcccgt
    27781 atgtccggct gatgagtgtc accctgaact gatgttccgt cacccgggaa acgagtacga
    27841 ccagatgacc tcagacgccg ctgtggatga ggccattctc atcaatgcat acatcttcac
    27901 cgaaaccggt cagcgcgccg gctgacctgt catcgttaaa ccattcttaa ccacttttca
    27961 gagaggattt tatcgtgtca gacaaactct ccgggataac tcatcccgat gacaatcacg
    28021 accgcccctg gtgggggctt ccctgcacag tgaggccctg ttttggcgct cgtctggtgc
    28081 aagagggtaa ccgcctgtat taccttgccg accgcgccgg tatcagaggc cgcttcagcg
    28141 acgcagatgc ataccatctg gaccaggcct ttccgctgct gatgaaacaa ctggaactca
    28201 tgctcaccag cggtgaactg aatccccgat atcagcatac cgtcacgctg tatgcaaaag
    28261 ggctgacctg cgaagccgac accctcggct cctgtggtta cgtttatctg gctgtttatc
    28321 cgacaccagc acccgcaacc acctcataac cccgaagctc tcacctttag cactaccagt
    28381 tacagagaac ttaagatgaa aacattatcc gacacacatg tacgggaggt atctcgctgc
    28441 ccgtctcccg tcaccatctg gcagacactg ctcatccgac tgctggacca gcattatggc
    28501 ctcacactga atgacacacc gtttgtcgat gaacgtgtga ttgagcagca tattgaggca
    28561 ggcatttcac tgtgtgatgc agttaatttt ctcgtggaaa aatacgcgct ggtgcgtacc
    28621 gaccagccgg gattcagcac ctgtccccgc tctcagttaa taaacagtat tgatatcctc
    28681 cgggctcgcc gggcgaccgg cctgatgacc cgcgacaatt acagaacggt aaataacatt
    28741 accctgggta agtatccgga ggcgaaatga tgaaactggc cctgacactg gaagccgaca
    28801 gcgttaacgt acaggcactg aacatagggc gcattgtcgt tgacgtcgat ggtattgagc
    28861 tcgctgaact gattaacatg gtctgcgata acggctactc ccttcgtgtt gttgatgaat
    28921 ctgaccagac ctcagcagaa tgcacgccac catttgctac ccttaccggc atacgctgca
    28981 gtaccgcaca tatcacggaa acggacaacg cctggttgta ctcgctgtca caccagacca
    29041 gtgacttcgg tgaatcagaa tggattcatt ttacaggtag cggatatctg ttacgtaccg
    29101 atgcgtggtc atacccggtt ctgcggctta aacgcctggg gctgtcaaaa acgttccgtc
    29161 gtctggtcgt cacactcatc cggcgttatg gcgtcagtct cattcatctg gatgccagcg
    29221 ctgaatgcct gccgggttta cccactttcg actggtaacc aggaacaaca tgaaatcatt
    29281 aaccacggaa acagcgctgg atattctgat tgcgtggctg caggacaata tcgactgcgg
    29341 atcgggaatt atctttgaca acgatgagga taaaacggat tcagcagcac tgttgccctg
    29401 tatcgaacag gcccgggagg atgtccgtac cctgcgtcat ctgcagcttc tgcaccagaa
    29461 ccggtgaagc tcactcacca gacttcattc ctctgacgcc agcctgcaca gggctggcgt
    29521 tttcatttat ctgcaaaaag gaatatcgat tatgtcagat atcacaatct cccgtccgga
    29581 agtggtcaac gggcatacgg acgttatctg ctcaaccagc attcgccaca ttctggctgt
    29641 acgaaagagt acactgttgc aaatcgacac acttatccga caactggctg aaatctcggt
    29701 gctgacggaa agcatcggag gtaaaactgc cccggactgg gccatgaaac aggattttcg
    29761 ctgcggctgc tggctgatgg agaaacccga aacagcaatg aaagccatta cccggaatct
    29821 tgatcgcgaa atctggcgtg acctgatgca acgttccggg atgctgtcat taatggatac
    29881 gcaggcccgt gatacatggt accggtcact ggagtacgat aattttccgg aaatcagcga
    29941 agcgaacatt ctgagcacat ttgaacaact gcaccagaat aaggatgagg tgtttgagcg
    30001 aggggtgatc aacgtcttca gagggctgaa ctggaattac aaaaccaatt gcccctgtaa
    30061 atttggcagt aaaattatcg tcaacaatct ggtgagatgg gaccggtggg gataatgata
    30121 tggtcacccc caccttaaca gcagtacgct gttaaggtaa atccctttaa cggagagacc
    30181 atcatgcaga acatcacact tattggtatc gatctcggaa agcactcctt ccacattcat
    30241 tgtcaagaca agtctggtaa ggctcttctg cgtaaaaaat ttacccgtac taaactgatg
    30301 cagtttctgg cgacatgtcc gccctcagtt gttgtaatgg aagcctgtgc gggtgcacac
    30361 tttatggctc gctgtatctc tgattttggg catgaaacta agctgatttc tccacagttc
    30421 gttcgcccgt ttgtcaaaag taataagaat gattttgttg atgcagaagc catatgcgaa
    30481 gcggcttcac gaccatcaat gcgttttgtc cagccaagaa ctgagaccca gcaggccatg
    30541 agggcgttac accgggtcag agaatcgctc atcagagata aggtgaaaac aaccaaccag
    30601 atccacggtt tcttgctgga atttggaatc agcctgccga taggtgatgc tgtaataaaa
    30661 cggttgtctc tcgtgttggc tgaacacgaa atccccgaat atctgagccg ccttttggtg
    30721 aggttgcata cccactactt ttaccttgtt gagcaaatag cagagctgga atcagaatta
    30781 agtcagtcaa tcaacgctga tgataccgct cagcgcatta tgacaattcc tggtgttggt
    30841 ccgattactg ccagcttact atcgtcgcaa cttggtgacg ggaaacagtt ctcatgcagc
    30901 agggattttg cagcttccac aggacttgtt ccccggcagt atagcactgg aggaaaatcg
    30961 actctgttgg gtatcagtaa gcgaggtgat aaaaatttac gccggttact ggttcagtgt
    31021 gcccgctcat tcataatgcg acttgaacgc aagcatggaa aacttgctga gtgggttcgg
    31081 gagcaactca acaagaagca ttcgaatgtg gttacctgcg ctctggcaaa taaactggct
    31141 cgaattgcct gggcaatcac tactcagaaa aaagaatatc aggcctgata tagatgctga
    31201 tataactcaa ttagtttatt ttaaacaata agatacaagt tacctttctg gttttgcgaa
    31261 gactgattat tgatgacatg aacggcaaat cgacctgatt aaaaacctaa cagatgaaat
    31321 ggctcactga agccgagggg atttttagga ttatcaggtg cggaactcat cggggcgcgg
    31381 gcatccttgc ccacagagac gccggataga tttaagcaag ccaaccatta atcaaaaatc
    31441 agtgttgcaa aaacgggggt gaccatagat ttcatcttat caccggacaa caggctgacc
    31501 gactcgccga tctggaaaga atgttgcacc tgttcagcgg taaaccaatc cccgacaacc
    31561 ggggaaacat cacccttcgt ctggatgatc acattcagtc tgttcagggt aaagagagct
    31621 atgaagatga gatgttcagc atcagatact ttaagaaggg ctccgcgcat atcacgttca
    31681 gaaaaccaga actggttgac agactgaatg atattatcgc aaaacactat cctgatatgc
    31741 tggcagtata gctttgccag tatgctcaaa gatcggaaat tgtccgataa gatatgatcg
    31801 cggggcatat aaaccggttt cagatggcat acccgatggc atactgtctg gaaggaaaaa
    31861 taaaaaagcg catgttaaac aataacatgc acttataatc tggcggtgag ggggggattc
    31921 gaacccccga tacgttgccg tatacacact ttccaggcgt gctccttcaa ccgctcggac
    31981 acctcaccaa attgttgttc ctgtcttgct ggaacgggcg ctaatttagg gaaatcatga
    32041 cctgaggtca acaaactttt tgaaaaaatc gcgcgtttat tcaaacttca atcaatgtgt
    32101 ggttttaata agcgaaatct gctttttttg ccaccgacca cggatttgtt atgctggtgg
    32161 cctttgtaga tcataacgat aagtgcgaat aaatttcgca caacgctttt cgggagtcag
    32221 tatggatatc atcttttatc acccaacgtt cgatacccaa tggtggattg aggcactgcg
    32281 caaagctatt cctcaggcaa gagtcagagc atggaaaagc ggagataatg actctgctga
    32341 ttatgcttta gtctggcatc ctcctgttga aatgctggca gggcgcgatc ttaaagcggt
    32401 gttcgcactc ggggccggtg ttgattctat tttgagcaag ctacaggcac accctgaaat
    32461 gctgaaccct tctgttccac tttttcgcct ggaagatact ggtatgggcg agcaaatgca
    32521 ggaatatgct gtcagtcagg tgctgcattg gtttcgacgt tttgacgatt atcgcatcca
    32581 gcaaaatagt tcgcattggc aaccgctgcc tgaatatcat tgggaagatt ttaccatcgg
    32641 cattttgggc gcaggcgtac tgggcagtaa agttgctcag agtctgcaaa cctggcgctt
    32701 tccgctgcgt tgctggagtc gaacccgtaa atcgtggcct ggcgtgcaaa gctttgccgg
    32761 acgggaagaa ctgtctgcat ttctgagcca atgtcgggta ttgattaatt tgttaccgaa
    32821 tacccctgaa accgtcggca ttattaatca acaattactc gaaaaattac cggatggcgc
    32881 gtatctcctc aacctggcgc gtggtgttca tgttgtggaa gatgacctgc tcgcggcgct
    32941 ggatagcggc aaagttaaag gcgcaatgtt ggatgttttt aatcgtgaac ccttaccgcc
    33001 tgaaagtccg ctctggcaac atccacgcgt gacgataaca ccacatgtcg ccgcgattac
    33061 ccgtcccgct gaagctgtgg agtacatttc tcgcaccatt gcccagctcg aaaaagggga
    33121 gagggtctgc gggcaagtcg accgcgcacg cggctactaa taaagcatca ggattcctgc
    33181 tatccttggc gggaattgaa tacaggagag agttatgtat cccgtcgacc ttcatatgca
    33241 taccgttgcc agcacacatg catatagcac attgagtgat tacattgccc aggccaaaca
    33301 aaagggcatt aaactttttg cgatcaccga tcatggcccg gatatggaag atgctccgca
    33361 tcactggcac ttcattaaca tgcgtatctg gccgcgagtg gttgatgggg tagggatcct
    33421 gcgcggcatc gaagctaaca ttaaaaatgt tgatggtgaa attgattgca gcggtaaaat
    33481 gtttgactcg ctggatctga ttattgccgg ttttcatgag ccggtttttg caccacatga
    33541 caaagcgacc aatacacaag cgatgatcgc cactatcgcc agcggcaatg tgcatataat
    33601 aagccatccc ggaaatccca aatatgaaat agatgtgaaa gccgttgctg aagcagccgc
    33661 gaaacatcag gtggcgctgg aaatcaataa ttcttcattt ttacactcac gtaagggcag
    33721 tgaagacaac tgtcgtgcgg tagccgcagc ggtacgtgat gctggaggtt gggtggcatt
    33781 aggctcggat tctcacaccg cgtttaccat gggggaattt gaagagtgtc ttaaaatcct
    33841 cgacgcggta gattttccgc cagagcgcat tttgaatgtt tctccgcgcc gcttactgaa
    33901 cttccttgaa tctcgcggta tggcaccgat tgcggaattt gcagaccttt aattactagt
    33961 aatggaaata tattaatgaa cgagttttct atcctctgtc gtgtgctggg ttcgctctat
    34021 taccgccaac cgcaagatcc tttactggtg ccgctgttta ccctgattcg tgaggggaaa
    34081 ctggctgcga actggccact ggagcaggat gagttactga cgcgtttaca gaaaagctgt
    34141 gatatggcgc aagtctctgc cgattacaat gcgttgttta tcggcgatga atgtgccgtg
    34201 ccgccatatc gtagcgcatg ggttgaggac gcaacggaag cggaagtgcg cgcttttctt
    34261 tccgaacgag ggatgccact ggcggatacg ccagccgatc acatcggcac attgctgctt
    34321 gcggcttcct ggatggaaga tcagtcaacg gaagatgaga gcgaagcact ggaaacactg
    34381 ttcagtgagt atctgttacc ctggtgtggt gcgttcctcg gcaaagtgga ggcccatgca
    34441 accacgcctt tctggcgcac catggcaccg ctaacccgtg atgccattag tgcaatgtgg
    34501 gacgagctgg aagaagattc tgaagagtaa atgtgatcat cgtcactcat aactgcaaca
    34561 gataatttgt tgttgcataa aatgtgtgct cgatctcatt catggccgcg ttttctgcta
    34621 tcatgcgcgg catgaacata cttctctcta ttgcaatcac aacaggcatt ctctccggta
    34681 tctggggatg ggtggctgtt tccctgggct tactaagctg ggcgggcttc ctgggctgta
    34741 cggcctactt tgcctgcccg caaggtgggc tgaaagggct ggcgatctcc gctgcaaccc
    34801 tgcttagtgg cgtggtgtgg gcgatggtca ttatttacgg tagtgcactg gcaccacatc
    34861 tggaaattct cggttatgtc ataaccggta ttgtggcgtt tctgatgtgt attcaggcca
    34921 aacagctgct gctttcattt gttccgggga cgtttatagg cgcatgcgcg acgtttgccg
    34981 ggcagggtga ctggaaactg gtgttacctt cgctggcgct tgggctggta tttggttacg
    35041 caatgaaaaa cagcggcctg tggctggcgg cgcgtagtgc aaagacggct caccgtgagc
    35101 aggaaatcaa aaataaagcg tgaggggcac tcacgctttc gcttaaacag taaaatgccg
    35161 gatgataatt ccggcttttt tatctgtcag gattccggtg gaaccgacat atggcggtat
    35221 ttcaccagaa tgtcattctg ccgttctgct ttattttgca aatcccacag accacggtcg
    35281 ataccatcat taatcaggaa aatgacccct gtttcgatag ccgacatcag acacagcata
    35341 acgggttcgt ttgaggtgta acccacttcc ccttccagca agcgctggta gtcaataaag
    35401 cggaaaaccc cggcctgaac ttcataggaa agtatcgtct tactggtgtt caccgaggag
    35461 aggatctcac cggtactcac attgacgaca cgcaggttca cggcaatctg atcgagctgg
    35521 tattgcgtgt ctgcaccgat cccaaaatat cttgccccaa caccgcccga tttaacgttg
    35581 ctttcataac cgataatcga accttcaacc ataatatttg ccgccgttaa agattgcagc
    35641 gggattcggt tattaatggc aaccgtgccg ttttcttgtg ccgcacgaat aatcttgcgc
    35701 tcgttaagca ggttttgtaa gccctagcgc tccagcggta taaaccagcg agaatctttc
    35761 aatgccgtga ccagcattgc cgtggcgctt tgcggaacag cagtggagaa gttacttgcc
    35821 gggtagggtt taaattgccc ggtttcgtcc tgaatgttgt atacc
//
LOCUS       DAJVSY010000023        35123 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.023, whole genome shotgun sequence.
ACCESSION   DAJVSY010000023 DAJVSY010000000
VERSION     DAJVSY010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 35123)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35123)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35123
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.023"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            32..1270
                     /gene="dsdA"
                     /locus_tag="OQQ19_001033"
                     /pseudo
     CDS             32..1270
                     /gene="dsdA"
                     /locus_tag="OQQ19_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416867.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="D-serine ammonia-lyase"
     gene            complement(1378..2916)
                     /gene="emrY"
                     /locus_tag="OQQ19_001034"
     CDS             complement(1378..2916)
                     /gene="emrY"
                     /locus_tag="OQQ19_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter permease
                     subunit EmrY"
                     /protein_id="HCS1802733.1"
                     /translation="MAITKSTPAPLTGGTLWCVTIALSLATFMQMLDSTISNVAIPTI
                     SGFLGASTDEGTWVITSFGVANAIAIPVTGRLAQRIGELRLFLLSVTFFSLSSLMCSL
                     STNLDVLIFFRVVQGLMAGPLIPLSQSLLLRNYPPEKRTFALALWSMTVIIAPICGPI
                     LGGYICDNFSWGWIFLINVPMGIIVLTLCLTLLKGRETETSPVKMNLPGLTLLVLGVG
                     GLQIMLDKGRDLDWFNSSTIIILTVVSVISLISLVIWESTSENPILDLSLFKSRNFTI
                     GIVSITCAYLFYSGAIVLMPQLLQETMGYNAIWAGLAYAPIGIMPLLISPLIGRYGNK
                     IDMRLLVTFSFLMYAVCYYWRSVTFMPTIDFTGIILPQFFQGFAVACFFLPLTTISFS
                     GLPDNKFANASSMSNFFRTLSGSVGTSLTMTLWGRRESLHHSQLTATIDQFNPVFNSS
                     SQIMDKYYGSLSGVLNEINNEITQQSLSISANEIFRMAAIAFILLTVLVWFAKPPFTA
                     KGVG"
     gene            complement(2916..4079)
                     /gene="emrK"
                     /locus_tag="OQQ19_001035"
     CDS             complement(2916..4079)
                     /gene="emrK"
                     /locus_tag="OQQ19_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter periplasmic
                     adaptor subunit EmrK"
                     /protein_id="HCS1802734.1"
                     /translation="MEQINSNKKHSNRRKYFSLLAVVLFIAFSGAYVYWSMELEDMIS
                     TDDAYVTGNADPISAQVSGSVTVVNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLA
                     NIVRQTNKLYLQDKQYSAEVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTL
                     ISSKAALNAAIQAYKANKALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGY
                     IAQRSVQVGETVSPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENV
                     VFHGRVTGINMGTGNAFSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSM
                     TATIDTKNEDIAEMPELASTVTSMPAYTSKALVIDTSPIEKEISNIISHNGQL"
     gene            4495..5109
                     /gene="evgA"
                     /locus_tag="OQQ19_001036"
     CDS             4495..5109
                     /gene="evgA"
                     /locus_tag="OQQ19_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-sensing system DNA-binding response
                     regulator EvgA"
                     /protein_id="HCS1802735.1"
                     /translation="MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL
                     KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSK
                     KEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKD
                     NNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG"
     gene            5114..8707
                     /gene="evgS"
                     /locus_tag="OQQ19_001037"
     CDS             5114..8707
                     /gene="evgS"
                     /locus_tag="OQQ19_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-sensing system histidine kinase EvgS"
                     /protein_id="HCS1802736.1"
                     /translation="MKFLPYFFLLCCGLWSTISFADEDYIEYRGISSNNRVTLDPVRL
                     SNKELRWLASKKNLVIAVHKSQTATLLHTDSQQRVRGINADYLNLLKRALNIKLTLRE
                     YADHQKAMDALEEGEVDIVLSHLVASPPLNDDIAATKPLIITFPALVTTLHDSMRPLT
                     SSKPVNIARVANYPPDEVIHQSFPKATIISFTNLYQALASVSAGQNDYFIGSNIITSS
                     MISRYFTHSLNVVKYYNSPRQYNFFLTRKESVVLNEVLNRFVDALTNEVRYEVSQNWL
                     DTGNLAFLNKPLELTEHEKQWIKQHPDLKVLENPYSPPYSMTDENGSVRGVMGDILNI
                     ITLQTGLNFSPITVSHNIHAGTQLNPGGWDIIPGAIYSEDRENNVSFAEAFITTPYVF
                     VMQKAPDSEQTLKKGMKVAIPYYYELHSQLKEMYPEVEWIKVDNASAAFHKVKEGELD
                     ALVATQLNSRYMIDHYYPNELYQFLIPGVPNASLSFAFPRGEPELKDIINKALNAIPP
                     SEVLRLTEKWIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKV
                     IQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENS
                     DSPFKDVFSNAHEVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYI
                     CGWQDITETRDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGS
                     GLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHS
                     FGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLV
                     HIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNM
                     QGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEHPITLPEKLSILIADDHPTNRL
                     LLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQNSS
                     LPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQVAHIAPQYRHLDI
                     EALKNNTANDLQLMQEILITFQHETHKDLPAAFQALEAGDNRTFHQCIHRIHGAANIL
                     NLQKLINISHQLEITPVSDDSKPEILQLLNSVKEHIAELDQEIAVFCQKND"
     gene            complement(8763..9908)
                     /gene="yfdE"
                     /locus_tag="OQQ19_001038"
     CDS             complement(8763..9908)
                     /gene="yfdE"
                     /locus_tag="OQQ19_001038"
                     /EC_number="2.8.3.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416872.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA:oxalate CoA-transferase"
                     /protein_id="HCS1802737.1"
                     /translation="MTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPP
                     GHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKNDYDKSIFINMLKQADVLAENFR
                     PGTMEKLGFSWETLQEINPRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYP
                     DAPPVRVGTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMA
                     YIATGKSPQRLGNRHPYMAPFDVFNTQDKPITICCGNDKLFSALCQALELTELVNDPR
                     FSSNILRVQNQAILKQYIERTLKTQAAEVWLARIHEVGVPVAPLLSVAEAIKLPQTQA
                     RNMLIEAGGIMMPGNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS"
     gene            complement(9982..10926)
                     /gene="yfdV"
                     /locus_tag="OQQ19_001039"
     CDS             complement(9982..10926)
                     /gene="yfdV"
                     /locus_tag="OQQ19_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter YfdV"
                     /protein_id="HCS1802738.1"
                     /translation="MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYA
                     LPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCAL
                     IAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKK
                     NSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLT
                     LAAHKFEFSAEIVYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGII
                     IASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS"
     gene            complement(10996..12690)
                     /gene="oxc"
                     /locus_tag="OQQ19_001040"
     CDS             complement(10996..12690)
                     /gene="oxc"
                     /locus_tag="OQQ19_001040"
                     /EC_number="4.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxalyl-CoA decarboxylase"
                     /protein_id="HCS1802739.1"
                     /translation="MSDQLQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAE
                     GIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMI
                     SGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPG
                     GVYLDLPANVLAATMEKDEALTTIVKVENPSPALLPCPKSVTSAISLLAKAERPLIIL
                     GKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVML
                     VGARLNWLLAHGKKGWAADTQFIQLDIEPQEIDSNRPIAVPVIGDIASSMQGMLAELK
                     QNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSSVRDVLRENQDIYLV
                     NEGANTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVTSGSPVVAIEGDSAF
                     GFSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYDKLMDA
                     FRGVGYNVTTTDELRHALTTGIQSRKPTIINVVIDPAAGTESGHITKLNPKQVAGN"
     gene            complement(12744..13994)
                     /gene="frc"
                     /locus_tag="OQQ19_001041"
     CDS             complement(12744..13994)
                     /gene="frc"
                     /locus_tag="OQQ19_001041"
                     /EC_number="2.8.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyl-CoA transferase"
                     /protein_id="HCS1802740.1"
                     /translation="MSTPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDV
                     TRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAI
                     DHMGFTWEHIQEINPRLIFGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPP
                     LVSAAALGDSNTGMHLLIGLLAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRL
                     DKLGYLEEYPQYPNGTFGDAVPRGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQN
                     WENTCKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIP
                     CAPVLSMKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIKAAPLLGEH
                     TAAVLQELGYSDDEIAAMKQNHAI"
     gene            complement(14507..15139)
                     /locus_tag="OQQ19_001042"
     CDS             complement(14507..15139)
                     /locus_tag="OQQ19_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdX family protein"
                     /protein_id="HCS1802741.1"
                     /translation="MKRLIMATMVTAILASSTVWAADNAPVAAQQQTQQVQQTQKTAA
                     AERISEQGLYAMRDVQVARLALFHGDPEKAKELTNEASALLSDDSTEWAKFAKPGKKT
                     NLNDDQYIVINASVGISESYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVME
                     NQYLMPLKQTRNALADAQKLLDKKQYYEANLALKGAEDGIIVDSEALFVN"
     gene            15435..15710
                     /locus_tag="OQQ19_001043"
     CDS             15435..15710
                     /locus_tag="OQQ19_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802742.1"
                     /translation="MKVNLILFSLFLLVYIMACNVFAFSISGGVSERSYKETEKTSAM
                     TTTHSTKLQPSQAILFKMREDAPPLNLTEEITPTYPTKANYLIHPVR"
     gene            complement(15787..16029)
                     /locus_tag="OQQ19_001044"
     CDS             complement(15787..16029)
                     /locus_tag="OQQ19_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdY family protein"
                     /protein_id="HCS1802743.1"
                     /translation="MIYLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYY
                     FTMWLTGGNELVTEIFMFLAPACGLMIRFMVGYGRR"
     gene            16382..17302
                     /gene="lpxP"
                     /locus_tag="OQQ19_001045"
     CDS             16382..17302
                     /gene="lpxP"
                     /locus_tag="OQQ19_001045"
                     /EC_number="2.3.1.242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311285.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid IV(A) palmitoleoyltransferase"
                     /protein_id="HCS1802744.1"
                     /translation="MFPQCKFSREFLHPRYWLTWFGLGVLWLWVQLPYPVLCFLGTRI
                     GAMARPFLKRRESIARKNLELCFPQHSAEEREKMIAENFRSLGMALVETGMAWFWPDS
                     RVRKWFDVEGLDNLKRAQMQNRGVMVVGVHFMSLELGGRVMGLCQPMMATYRPHNNQL
                     MEWVQTRGRMRSNKAMIGRNNLRGIVGALKKGEAVWFAPDQDYGRKGSSFAPFFAVEN
                     VATTNGTYVLSRLSGAAMLTVTMVRKADYSGYRLFITPEMEGYPTDENQAAAYMNKII
                     EKEIMRAPEQYLWIHCRFKTRPVGESSLYI"
     gene            17658..17729
                     /gene="ypdK"
                     /locus_tag="OQQ19_001046"
     CDS             17658..17729
                     /gene="ypdK"
                     /locus_tag="OQQ19_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_077777854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein YpdK"
                     /protein_id="HCS1802745.1"
                     /translation="MKYFFMGISFMVIVWAGTFALMI"
     gene            complement(17794..19032)
                     /gene="alaC"
                     /locus_tag="OQQ19_001047"
     CDS             complement(17794..19032)
                     /gene="alaC"
                     /locus_tag="OQQ19_001047"
                     /EC_number="2.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine transaminase"
                     /protein_id="HCS1802746.1"
                     /translation="MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMG
                     NPDGATPPHIVEKLCTVAQRQDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAI
                     VTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE
                     LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVY
                     DGWKAPSIMQVPGARDVAVEFFTLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYG
                     TFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWIVEMPKASMYVWAKI
                     PEPYAAMGSLVFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKA
                     MFRADGLLPASSKHIHENAE"
     gene            19409..21106
                     /gene="ypdA"
                     /locus_tag="OQQ19_001048"
     CDS             19409..21106
                     /gene="ypdA"
                     /locus_tag="OQQ19_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     YpdA"
                     /protein_id="HCS1802747.1"
                     /translation="MHEIFNMLLAVFDRAALMLICLFFLIRIRLFRELLHKSAHSPKE
                     LLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRY
                     LIDIGGVTAIPCFITSILAGCISGWINLKIPKAQRWRVGIIGGMLCETLTMILVIVWA
                     PTTALGIDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLP
                     LFRHVNSESLRKVCEIIRDDIHADAVAITNTDHVLAYVGVGEHNYQNGDDFISPTTRQ
                     AMNYGKIIIKNNDEAHRTPEIHSMLVIPLWEKGVVTGTLKIYYCHAHQITSSLQEMAV
                     GLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTAR
                     QLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDYIAIEQARFGDKLTVIYDIDEEVNC
                     CIPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERV
                     EANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEIAFYIPNQRTPVASQATLLL"
     gene            21121..21855
                     /gene="ypdB"
                     /locus_tag="OQQ19_001049"
     CDS             21121..21855
                     /gene="ypdB"
                     /locus_tag="OQQ19_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator YpdB"
                     /protein_id="HCS1802748.1"
                     /translation="MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQH
                     NRVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKP
                     YQESRITGMLQKLEAAWQQQQTSSTPAATVTRENDTINLVKDERIIVTPINDIYYAEA
                     HEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYI
                     LRLKDLDFEVPVSRSKVKEFRQLMHL"
     gene            21868..22725
                     /locus_tag="OQQ19_001050"
     CDS             21868..22725
                     /locus_tag="OQQ19_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1802749.1"
                     /translation="MKAPGLPADQQFFADLFSGLVLNSQLLGRVWFASQPASLPVGSL
                     CIDFPRLDIVLRGEYGNLLEAKQQRMVEGEMLFIPARAANLPINNKPVMLLSLVFAPT
                     WLGLSFYDSRTTSLLHPARQIQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSL
                     LHLCRNVVNMPPGNSQPRGDFLYHSICNWVQDNYTQPLTRESVAQFFNITPNHLSKLF
                     AQHGTMRFIEYVRWVRMAKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTP
                     GEYSARFQG"
     gene            complement(22728..25223)
                     /gene="ptsP"
                     /locus_tag="OQQ19_001051"
     CDS             complement(22728..25223)
                     /gene="ptsP"
                     /locus_tag="OQQ19_001051"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HCS1802750.1"
                     /translation="MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEITFINHRQNAKA
                     DAKSSLALIGTGTLFNDSCSLNISGSDEEQAQRVLEEYIQVRFIDSDSIQPTQAELTA
                     HPLPRSLSRLNPDLLYGNVLASSVGVGTLTLLQSDSLDSYRAIPASAQDSTRLEHSLA
                     TLAEQLNQQLRESDGESKTILSAHLSLIQDDEFAGNIRRLMTEQHQGLGAAIISNMEQ
                     VCAKLSASASDYLRERVSDIRDISEQLLHITWPELKPRNNLVLEKPTILVAEDLTPSQ
                     FLSLDLKNLAGMILEKTGRTSHTLILARASAIPVLSGLPLDAIARYAGQPAVLDAQCG
                     VLAINPNDAVSGYYQVAQTLADKRQKQQAQAAAQLAYSRDNKRIDIAANIGTALEAPG
                     AFANGAEGVGLFRTEMLYMDRDSAPDEQEQFEAYQQVLLAAGDKPIIFRTMDIGGDKS
                     IPYLNIPQEENPFLGYRAVRIYPEFAGLFRTQLRAILRAASFGNAQLMIPMVHSLDQI
                     LWVKGEIQKAIVELKRDGLRHAETITLGIMVEVPSVCYIIDHFCDEVDFFSIGSNDMT
                     QYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTTAHQRGKWVGICGELGGESRYLPLL
                     LGLGLDELSMSSPRIPAVKSQLRQLDSEACRELARQACECRSAQEIEALLTAFTPEED
                     VRPLLALENIFVDQDFSNKEQAIQFLCGNLGVNGRTEHPFELEEDVWQREEIVTTGVG
                     FGVAIPHTKSQWIRHSSISIARLAKPIDWQSEMGEVELVIMLTLGANEGMNHVKVFSQ
                     LARKLVNKNFRQSLFAAQDAQSILTLLEIELTF"
     gene            complement(25248..26285)
                     /gene="ypdE"
                     /locus_tag="OQQ19_001052"
     CDS             complement(25248..26285)
                     /gene="ypdE"
                     /locus_tag="OQQ19_001052"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HCS1802751.1"
                     /translation="MDLSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFDGLGS
                     VLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTR
                     EECKIPGLLDGDRQGNDVSAMRVDIGTRSYDEVMQAGIRPGDRVTFDTTFQVLPHQRV
                     MGKAFDDRLGCYLLVTLLRELHSAELPAEVWLVASSSEEVGVRGGQTATRAVSPDVAI
                     VLDTACWAKNFDYGAANHRQICNGPMLVLSDKSLIAPPKLTAWIETVAAEIGVPLQAD
                     MFSNGGTDGGAVHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMQQLLSALIKRLT
                     RETVVQLTDFR"
     gene            complement(26285..27370)
                     /gene="ypdF"
                     /locus_tag="OQQ19_001053"
     CDS             complement(26285..27370)
                     /gene="ypdF"
                     /locus_tag="OQQ19_001053"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HCS1802752.1"
                     /translation="MTLLASLRDWLKEQQLDAVLLSSRQNKQPHLGISTGSGYVVISR
                     ESAHILVDSSYFVEVEARAQGYQLHLLDATNTLTTIVNQIIADEQLQTLGFEGQQVSW
                     ETAHRWKSELNAKLVSATPDVLRQIKTPEEVEIIRLACGIADRGAEHIRRFIQAGMSE
                     REIAAELEWFMRQQGAEKASFDTIVASGWRGVLPHGKASDKIVAAGEFVTLDFGALYQ
                     GYCSDMTRTLLVNGEGVSAESHPLFDVYQIVLQAQLAAISAIRPGVRCQQIDDAARRV
                     ITEAGFGDYFGHNTGHAIGIEVHEDPRFSPRDTTTLQPGMLLTVEPGIYLPGQGGVRI
                     EDVVLVTPQGAEVLYAMPKTVLLTGEA"
     gene            complement(27385..28632)
                     /locus_tag="OQQ19_001054"
     CDS             complement(27385..28632)
                     /locus_tag="OQQ19_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIC"
                     /protein_id="HCS1802753.1"
                     /translation="MAIKKRSATVVPGASGAAAAVKNPQASKSSFWGELPQHVMSGIS
                     RMVPTLIMGGVILAFSQLIAYSWLKIPAEIGIMDALNSGKFSGFDLSLLKFAWLSQSF
                     GGVLFGFAIPMFAAFVANSIGGKLAFPAGFIGGLMSTQPTQLLNFDPSTMQWATSSPV
                     PSTFIGALIISIVAGYLVKWMNQKIQLPDFLLAFKTTFLLPILSAIFVMLAMYYVITP
                     FGGWINGVIRTVLTAAGEKGALMYAMGIAAATAIDLGGPINKAAGFVAFSFTTDHVLP
                     VTARSIAIVIPPIGLGLATIIDRRLTGKRLFNAQLYPQGKTAMFLAFMGISEGAIPFA
                     LESPITAIPSYMVGAIVGSTAAVWLGAVQWFPESAIWAWPLVTNLGVYMAGIALGAVI
                     TALMVVFLRLMMFRKGKLLIDSL"
     gene            complement(28654..28980)
                     /locus_tag="OQQ19_001055"
     CDS             complement(28654..28980)
                     /locus_tag="OQQ19_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-like phosphotransferase enzyme IIB
                     component 1"
                     /protein_id="HCS1802754.1"
                     /translation="MSKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGAD
                     GIQNRLTAQDIAEATIIIHSVAVTPEDNERFESRDVYEITLQDAIKNAAGIIKEIEEM
                     IASEQQ"
     gene            complement(29199..30164)
                     /gene="glk"
                     /locus_tag="OQQ19_001056"
     CDS             complement(29199..30164)
                     /gene="glk"
                     /locus_tag="OQQ19_001056"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HCS1802755.1"
                     /translation="MIKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAV
                     IRVYLEEHKVEVKDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFT
                     AVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGH
                     VDFAPNSEEEAIILEILRAEIGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDI
                     TERALADSCTDCRRALSLFCVIMGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASG
                     FRAAFEDKGRFKEYVHDIPVYLIVHDNPGLLGSGAHLRQTLGHIL"
     gene            30368..31624
                     /locus_tag="OQQ19_001057"
     CDS             30368..31624
                     /locus_tag="OQQ19_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion channel protein"
                     /protein_id="HCS1802756.1"
                     /translation="MLHPRARTMLLLSLPAVAIGIASSLILIVVMKIASVLQNLLWQR
                     LPGTLGIAQDSPLWIIGVLTLTGIAVGLVIRFSQGHAGPDPACEPLIGAPVPPSALPG
                     LIVALILGLAGGVSLGPEHPIMTINIALAVAIGARLLPRVNRMEWTILASAGTIGALF
                     GTPVAAALIFSQTLNGSSEVPLWDRLFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQM
                     EMTDILSGAIVAAIAIAAGMVAVWCLPRLHAMMNQMKNPVLVLGIGGFILGILGVIGG
                     PVSLFKGLDEMQQMVANQAFSTSDYFLLAVIKLAALVVAAASGFRGGRIFPAVFVGVA
                     LGLMLHEHVPAVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPNTTLLPLLCIVML
                     PAWLLLAGKPMMMVNRPKQQPPHDNV"
     gene            31739..32065
                     /locus_tag="OQQ19_001058"
     CDS             31739..32065
                     /locus_tag="OQQ19_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2502 domain-containing protein"
                     /protein_id="HCS1802757.1"
                     /translation="MFRSLFLAAALMAFTPLAANAGEITLLPSIKLQIGDRDHYGNYW
                     DGGHWRDRDYWHRNYEWRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDDHRGKGR
                     GHGHRH"
     gene            complement(32206..33444)
                     /locus_tag="OQQ19_001059"
     CDS             complement(32206..33444)
                     /locus_tag="OQQ19_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HCS1802758.1"
                     /translation="MTNYRVESSSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQA
                     GASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAE
                     IIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL
                     LLFVAAAYIVELIFSQPNLAQLGKGMVIPSLPTSEAVFLAAGVLGATIMPHVIYLHSS
                     LTQHLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAY
                     LTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVTMLP
                     SFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSKRVKQTGWV
                     IVVLVVALNIWLLVGTALGL"
     gene            33780..34982
                     /gene="nupC"
                     /locus_tag="OQQ19_001060"
     CDS             33780..34982
                     /gene="nupC"
                     /locus_tag="OQQ19_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease NupC"
                     /protein_id="HCS1802759.1"
                     /translation="MDRVLHFVLALAVVAILALLVSSDRKKIRIRYVIQLLVIEVLLA
                     WFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFIS
                     ALIGILQHIRVLPVIIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGK
                     ISRNRMYTMAATAMSTVSMSIVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVD
                     ASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALIAALNALFATVTG
                     WFGYSISFQGILGYIFYPIAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIAST
                     LSPRAEGIISVFLVSFANFSSIGIIAGAVKGLNEEQGNVVSRFGLKLVYGSTLVSVLS
                     ASIAALVL"
BASE COUNT         9253 a         8727 c         8108 g         9035 t
ORIGIN      
        1 gtcacggcga actgcctttc aaggttgaag tggcacgacc tcattggctg aaggtttacc
       61 ttatgttggc ctgaccgaac aggatgttca ggacgcccat gcgcgcttat cccgttttgc
      121 accctatctg gcaaaagcat ttgctgaaac tgctgccact ggggggatta ttgaatcaga
      181 actggttgcc attccagcta tgcaaaaacg gctggaaaaa gaatatcagc aaccgatcag
      241 cgggcaactg ttactgaaaa aagatagcca tttgcccatt tccagctcca taaaagcacg
      301 cggcgggatt tatgaagtcc tggcacacgc agaaaaactg gctctggaag cggggttgct
      361 gacgcttgat gatgactaca gcaaactgct ttctccggag tttaaacagt tctttagcca
      421 atacagcatt gctgtgggct caaccggaaa tctggggtta tcaatcggca ttatgagcgc
      481 ccgcattggc tttaaggtga cagttcatat gtctgctgat gcccgggcat ggaaaaaagc
      541 gaaactgcgc agccatggcg ttacggtcgt ggaatatgag caagattatg gtgttgccgt
      601 cgaggaagga cgtaaagcag cgcagtctga cccgaactgt ttctttattg atgacgaaaa
      661 ttcccgcacg ttgttccttg ggtattccgt cgctggccag cgtcttaaag cgcaatttgc
      721 ccagcaaggc cgtatcgtcg atgctgataa ccctctgttt gtctatctgc cgtgtggtgt
      781 tggcggtggt cctggtggcg tcgcattcgg gcttaaactg gcgtttggcg atcatgttca
      841 ctgctttttt gccgaaccaa cgcactcccc ttgtatgttg ttaggcgtcc atacaggatt
      901 acacgatcag atttctgttc aggatattgg tatcgacaac cttaccgcag cggatggcct
      961 tgcagttggt cgcgcatcag gctttgtcgg gcgggcaatg gtgcgtctgc tggatggctt
     1021 ctataccctt agcgatcaaa ccatgtatga catgcttggc tggctggcgc aggaagaagg
     1081 tattcgtctt gaaccttcgg cactggcggg tatggccgga cctcagcgcg tgtgtgcatc
     1141 agtaagttac caacagatgc acggtttcag cgcagaacaa ctgcgtaata ccactcatct
     1201 ggtgtgggcg acgggaggtg gaatggtgcc ggaagaagag atgaatcaat atctggcaaa
     1261 aggccgttaa taacgtttca acgcagcatc gcaatccttt ccctgggtga gcgatgctgc
     1321 cgatagcgca gacttaagat ccccggtctt acccgctata accccctcct tttatcatca
     1381 cccaacgcct ttcgctgtaa acggcggttt cgcaaaccaa accaaaaccg taagtaagat
     1441 aaaagcaata gccgccatac ggaaaatctc atttgcagaa atagaaagtg actgctgggt
     1501 tatttcatta ttaatttcat taagaactcc tgaaagcgaa ccataatatt tatccataat
     1561 ttgtgacgat gaattaaaca cggggttaaa ttgatcgatg gttgctgtca actgactatg
     1621 gtgtaacgat tcgcgtcgtc cccacagcgt cattgtcaac gacgtaccaa ctgatcctga
     1681 caaggtacga aaaaaattac tcatactcga ggcattggca aatttattat ctggcaagcc
     1741 tgaaaacgaa atcgttgtta agggtaaaaa gaaacaggca acggcgaatc cctgaaaaaa
     1801 ctgcggcaaa atgatgcctg taaaatcaat cgttggcata aatgtcacag aacgccagta
     1861 atagcaaacc gcatacatca aaaaactaaa tgtcactaac aaccgcatgt ctattttgtt
     1921 gccataacgt cctatcaaag gtgaaattaa tagtggcatg atgccgatgg gcgcataagc
     1981 aagtccggcc catatcgcat tataccccat cgtttcctgg agtaactgcg gcataaggac
     2041 gatcgctcca gagtaaaata aatacgcgca tgtgatactc acaataccaa tggtgaagtt
     2101 acgggactta aacaaactga gatcaagaat cgggttctct gaggtcgact cccaaatgac
     2161 taaagagatc agagaaataa ctgatactac tgttaatatt attattgtac tcgagttgaa
     2221 ccaatccaga tcgcgccctt tatcaagcat aatttgcaag ccaccaacac cgagcactaa
     2281 cagggtcagt cctggtagat tcattttgac cggtgaagtc tcagtttctc ttcctttaag
     2341 taaggttaag cataatgtca ggacgataat ccccataggg acattgatta aaaatatcca
     2401 accccagcta aagttatcac aaatataacc gcccaatatc ggcccacata tcggagcgat
     2461 aatcacggtc attgaccata atgccagagc aaatgttctt ttttctggcg gataattcct
     2521 taataataaa ctctgtgaca gtggaattaa cggccccgcc attaacccct gaacgactct
     2581 aaaaaatatc agcacatcaa gattggtcga taggctacac attaatgaag acagcgaaaa
     2641 aaaggttact gaaagtaaaa ataatcttaa ttcgcctatt ctttgtgcca acctgccagt
     2701 aacagggatc gcaatggcat ttgctacacc aaacgaggtg ataacccagg tgccttcgtc
     2761 tgttgatgct cccagaaagc cagatattgt cggtattgcg acgttagaaa tagtggaatc
     2821 caacatttgc ataaatgtcg ctaatgacaa tgcaatagtg acgcaccata acgtcccacc
     2881 ggttaatggt gccggagttg atttagtgat tgccattaaa gttgtccatt atgcgaaata
     2941 atgttgctaa tttctttttc tatcggactg gtatcgataa ctaaagcctt actggtataa
     3001 gccggcatgg aggtcacggt tgaagccagc tcaggcatct cggcaatgtc ttcgttcttc
     3061 gtatcaatag ttgctgtcat cgataaacca atacgcaagg gatgttccat gagttctttt
     3121 ggatcaagag aaacttcaac cggtacacgc tgaacgattt tgatccagtt ccctgtcgca
     3181 ttttgtgcag gtaataagga gaacgcattg ccggttccca tattgatccc tgtcacccga
     3241 ccatgaaaca caacattttc accataaaga tcgctgataa tattgaccga ttgaccaatc
     3301 cgcacatccg tgagttgtgt ttctttaaag ttggcattaa cccacatttg acgtgccggt
     3361 acgacagcca ttaacgattg tccggggctc actgtttcgc cgacctgaac acttctctgg
     3421 gcaatatagc cggtaaccgg actcttaata tccgtacgtt taagcgccaa ccaggcttct
     3481 ttagttgcat ccgccgcttc aacgacttgt ggctgacggt ttaatggtgt gttcattact
     3541 aaagctttat tcgctttata agcctggata gcggcattca atgccgcttt gctacttatt
     3601 aacgtatctt tggtatgctc cagcgtttct tttgaaataa ccccctgctt cgctaacggc
     3661 actcgacggt tataatcttc taaagattgt tgatactgaa tacgtgctga agcgacttcg
     3721 gcactgtatt gtttatcctg taagtatagt ttattcgttt gccgaacaat atttgccaga
     3781 ttatttttag ctttattgag tgcgatagtg gcatcagttt tatccagtga aactaaaatg
     3841 tcaccttgtc gaacgtagtt cgtatcttta tgattaacga cagtgacact acctgagact
     3901 tgtgcagaaa ttggatctgc attccccgtg acataggcgt catctgtact aatcatgtct
     3961 tctaattcca ttgaccaata gacataggca cctgaaaacg caataaataa aactaccgcc
     4021 aataaagaaa agtattttct tctgttagaa tgttttttat ttgaattaat ctgttccact
     4081 attatctctc atttctcata gatgaaattt atgaattgaa tgaaaagagc attcattctt
     4141 catatcaaac acagtgcatg tgttgcacat tatcccagga acgttggagg cctaatttaa
     4201 atgaggtgca aaaaaaacaa cagaggacta aaccgtggct tttgcaatac aattcttacg
     4261 cctgtaggat tagtaagaag acttatagtg ctaacttgaa actataaatc atcggtacaa
     4321 cccctgattt tattgttgac atttcattta tgccgactat ttatatggta tacttgtcga
     4381 attatcttaa aggaagctca gattttctta tttttattga gaaaatgaga tgacgcctta
     4441 tgtctgtatt actacaggga gaagggagat gcttcattgc aaagggaata atctatgaac
     4501 gcaataatta ttgatgacca tcctcttgct atcgcagcaa ttcgtaattt attgatcaaa
     4561 aacgatattg aaatcttagc ggagttgact gaagggggaa gcgccgttca gcgggtggaa
     4621 acacttaagc ctgatatcgt catcattgat gtcgatatcc ccggagttaa cggtatccag
     4681 gtgttagaaa cgctgaggaa gcgccaatat agcggaatta ttattattgt ctccgctaaa
     4741 aatgaccatt tttacgggaa acattgtgct gatgctggcg ctaatggatt cgtgagtaaa
     4801 aaagaaggca tgaacaatat cattgcggct attgaagctg caaaaaatgg ctactgctat
     4861 ttccccttct ctctcaaccg gtttgttgga agtttaacgt ccgaccagca aaaactcgac
     4921 tccttatcga aacaagaaat tagtgtcatg cggtatattc ttgatggcaa ggataataat
     4981 gacattgctg aaaaaatgtt catcagcaac aaaactgtca gcacttataa aagtcgcctg
     5041 atggaaaaat tagaatgtaa atcactgatg gatctttaca cattcgcgca acgtaacaaa
     5101 atcggctaat cacatgaagt ttttacccta tttttttctt ctctgttgtg gtctttggtc
     5161 gaccataagt ttcgcagacg aagattacat cgaatatcgt ggcatcagta gtaacaaccg
     5221 tgtcacactt gatccagtac gtctgagcaa caaggaatta cgttggttag cgagcaaaaa
     5281 aaatcttgtg attgcagtac acaagtccca aacggctacc ttgttgcata ccgattcgca
     5341 gcaacgggtt cgtggtatta atgctgatta tttaaatctt ttaaaaagag cgttaaatat
     5401 caaattaaca ctccgggaat acgccgatca tcaaaaagca atggacgcgc tggaagaagg
     5461 tgaagtcgat atagtgttat cacatttagt tgcttcgccg cctcttaatg atgacattgc
     5521 tgcaaccaaa ccactgataa ttacctttcc ggcgctcgtc accacccttc acgattcaat
     5581 gcgaccgctt acctcatcaa aaccagtaaa tattgctcga gtagcaaatt atccccctga
     5641 cgaggtaatt catcaatcat ttccaaaagc aacaattatc tcttttacaa atttatatca
     5701 ggcattagca tccgtctcag ccggacagaa tgattacttt attggtagta acatcattac
     5761 cagcagtatg atttcccgct atttcactca ctccttaaat gtagtgaaat attataactc
     5821 accgcgtcaa tataattttt tcttgaccag aaaagaatct gtcgttctta atgaagtact
     5881 caatcgattt gttgatgctt taacaaatga agttcgctat gaagtttcac aaaattggct
     5941 tgatacagga aacctggcct ttctgaacaa accattagaa ctcactgaac atgaaaaaca
     6001 gtggattaag caacatcccg atttaaaggt gctggaaaat ccttactctc ctccctattc
     6061 tatgacggat gaaaatggct cggttcgggg cgttatgggg gatattctta atattattac
     6121 cttgcaaaca ggtttaaatt tttctccgat caccgtttca cacaatatcc atgccggaac
     6181 acagcttaac cccggtggat gggatataat acctggcgct atttatagtg aagatcgaga
     6241 aaataatgtt tcatttgcag aagctttcat aacaacgcca tacgtttttg tcatgcaaaa
     6301 agcacctgac agtgaacaaa cattaaaaaa aggaatgaaa gttgccattc catattatta
     6361 tgagctgcat tcgcaattaa aagagatgta tccggaggtt gagtggataa aagtcgataa
     6421 cgccagcgct gcatttcaca aggtcaagga aggtgaactt gatgctctgg tcgcgacaca
     6481 gctaaattcg cgttacatga tcgatcatta ctatcctaat gaactgtatc agtttcttat
     6541 tcccggcgtt ccgaatgcat cgctttcgtt cgcttttcct cgcggagaac cggaacttaa
     6601 ggatattatt aataaagcac tgaatgcaat tcccccaagc gaagttctgc gcctgacgga
     6661 aaaatggatt aaaatgccca atgtgaccat tgacacatgg gacctctata gcgagcaatt
     6721 ttatattgtt acgacattat ccgttttatt agttggcagt agccttttat ggggattcta
     6781 cctgttacgc tcagttcgtc gtcgtaaagt cattcagggt gatttagaaa accaaatatc
     6841 attccgaaaa gcactctcgg attccttacc aaatccaact tatgttgtaa actggcaagg
     6901 taatgtcatt agtcataata gtgcttttga acattatttc actgcggatt actacaaaaa
     6961 tgcaatgtta ccattagaaa acagtgactc accctttaaa gatgtttttt ctaatgcgca
     7021 tgaagtcaca gcagaaacga aagaaaatcg aacaatatac acacaggtat ttgaaattga
     7081 taatggcatc gagaaaagat gcattaatca ctggcataca ttatgcaatc tgccagccag
     7141 cgatcatgct gtttatattt gtggttggca agatattacc gagacgcgtg atttaattca
     7201 tgcactcgaa gtagagagaa ataaagcgat caatgcaact gtcgcaaaaa gtcagtttct
     7261 ggcaacaatg agtcacgaaa taagaacacc aataagctcc attatgggct tcctggaact
     7321 tctgtcgggt tctggtctta gcaaggagca acgggtggag gcgatttcac ttgcctacgc
     7381 caccggacaa tcactcctcg gcttaattgg tgaaatcctt gatgtcgaca aaattgaatc
     7441 gggtaactat caacttcaac cacaatgggt cgatatccct actttagtcc agaacacttg
     7501 tcactctttc ggtgcgattg ctgcaagcaa atcgatcgca ttaagttgca gcagtacatt
     7561 tcctgatcat tacctggtta agatcgaccc tcaggcgttt aagcaggtct tatcaaattt
     7621 actgagcaat gctctcaaat ttaccaccga gggggcagta aaaattacga cctccctggt
     7681 tcacattgat gacaaccacg ctgttatcaa aatgacgatt atggattctg gaagtggatt
     7741 atcgcaggaa gaacaacaac aactctttaa acgctacagc caaacaagtg caggtcgcca
     7801 gcaaacagga tctggcttag gcttaatgat ctgcaaagaa ttaattaaaa atatgcaggg
     7861 cgatttgtca ttagaaagtc atccaggcat aggaacaaca tttacgatca caatcccggt
     7921 agaaattagc cagcaagtgg cgactgtcga ggcaaaagca gaacacccca tcacactacc
     7981 tgaaaagttg agcatattaa tcgcggatga tcatccgacc aacaggctat tactcaaacg
     8041 ccagctaaat ctattaggat atgatgttga tgaagccact gatggtgtgc aagcgctaca
     8101 caaagtcagt atgcaacatt atgatctgct tattactgac gttaatatgc cgaatatgga
     8161 tggttttgag ttgactcgca aactccgtga gcaaaattct tccttaccca tctgggggct
     8221 tacagccaac gcacaggcta acgaacgtga aaaagggtta agttgcggca tgaacttatg
     8281 tttgttcaaa ccgttgaccc tggatgtact gaaaacacat ttaagtcagt tacaccaggt
     8341 tgcgcatatt gcacctcagt atcgccacct tgatatcgaa gccctgaaaa ataatacggc
     8401 gaacgatcta caactgatgc aggagattct catcactttc cagcatgaaa cgcataaaga
     8461 tctacccgct gcgtttcaag cactagaagc tggcgataac agaactttcc atcagtgtat
     8521 tcatcgcatc cacggtgcgg ctaacatcct gaatttgcaa aagttgatta atattagcca
     8581 tcagttagaa ataacacctg tttcagatga cagtaagcct gaaattcttc agttgctgaa
     8641 ctctgtaaaa gaacacattg cagagctgga ccaggagatt gctgttttct gtcagaaaaa
     8701 tgactaaata gcggctccca caatgttcaa atgtgggagc tatttaccag cacatcttac
     8761 atttatgatg agaactcctg gcgaatttgt tccccatgct ggtcgagcgt tgccgctccc
     8821 ggcataacat gcgggtccgc gcagccgctg atttttatcg gattacccgg catcattatt
     8881 cccccggctt caatcaacat atttctcgcc tgagtttgtg gcaatttaat ggcctcagcc
     8941 acacttaata acggcgcgac gggtacacca acttcatgta ttctggctaa ccaaacttca
     9001 gctgcctgcg tttttaacgt ccgctcaata tattgtttaa gaatagcctg gttttgtacg
     9061 cgtaaaatat tgctgctaaa tcggggatca ttaaccagtt ccgtaagctc cagtgcctgg
     9121 cataacgcag aaaaaagctt gtcattacca caacaaatcg taatcggctt atcctgagta
     9181 ttgaaaacat caaaaggtgc catgtaggga tggcgatttc ccagacgttg tggtgacttc
     9241 cctgtcgcga tatatgccat cagaccatgc tccagaaaac tcagcgtggc atcaaacatc
     9301 gctatatcga catgcgcccc tctctggctc ttttcgcggc cataaagtgc actcactatt
     9361 ccgctgaata aatagacacc gccgcataga tccgcaagag atgtaccaac gcgcactggc
     9421 ggagcatcag gatatcctgt ttccatcatt atcccgctca ttgcctgaat gatggtatcg
     9481 taggcaggag catcttttag cggaccggta tgtccgaaac ctgacgatga agcatatatg
     9541 aggcgcgggt tgatttcttg aagcgtttcc catgaaaacc ccagtttttc cattgtacct
     9601 gggcgaaaat tctcagctaa tacatcagct tgtttgagca tatttataaa tatactttta
     9661 tcgtaatcat tctttaaatc aagaaccaca ctctctttgc catgattaat aaaactgtaa
     9721 tagagtgact gtccatccac atagggacca aatgtgcggg tatcatcacc atgacccggc
     9781 ggctcaactt taattaccct tgcgcccata ttacaaagaa gttgagttcc gaaaggtcca
     9841 ttaaggacat gtgtcatatc gataactaat aagccttcaa acggcccttt gctttcatta
     9901 tttgtcattt gcttatgcct tgaaaaaagc cgaaggtgaa aagacacttc ggcatttatg
     9961 taaaatcaat aacatgatta attatgaaac cagtcgactg acataaatcc acaagggagc
    10021 cgtgacgaca aagcccagta cgctcacagc caatgacgct gtaccagtac gggtgtagac
    10081 attaaaccgg ctggcaataa taattccgga gaatgccggc ggtaatgcgc ctgccagtac
    10141 catcatctgc agatgttcgc tgttcaaatg acatgccata ccaacgagaa gcagtgccag
    10201 tggcatcaga atcagcttca ggaaggtgtt ataaacaatt tcggcactga actcgaattt
    10261 atgtgcagcc agagtcaacc ccgcagcgaa taccgctacc cctgagttag ccttcgcaat
    10321 cagattaaag gttgggtccc atgctgccgg aatttttacc ccaaccaaca ccaggatcgt
    10381 tgccagaaca ggtgcccata ctactggctc ctttgccgca gaaattaatg cactcagatt
    10441 actattcttc ttaccatccg ctcctgaaga aggattcagc aaatacagac caataggaat
    10501 agtaattgcg ttaacaataa tagaaataat tgctaccact aaacctgttg atacggaatc
    10561 accataaata ggatcgagaa ctgcaaaccc caggaatcca atggtaggtg aacctgcaat
    10621 taatgcacat acagctgctt ctgcatgggt acgtttaaaa aatttgtagc aaccgaacca
    10681 ggagaaaaag aaacatccga caataaccac aagtgataca agggtcagac gagtgtccgc
    10741 aaaaatcatt tccctgtttg cccgagtaat agatacaaat agagccgcag gaagcgcgta
    10801 gtttaatacc agtttattaa atgcgcgggc ttgatcttct gaaaaagttt ctcgtctgcc
    10861 gctaaaataa cccaacagca tgattacgat aataggcaat aaatcgccaa taaaaaatgt
    10921 tagcataata gtatttccga taagggtccc ctcaccatcg cataatgaat tggcaagagg
    10981 agacgatgtc agtatttaat taccagcgac ttgttttggg ttaagtttgg taatatggcc
    11041 actttcagtt cctgctgcag ggtcgatgac cacattaata atggtcggtt tgcgcgactg
    11101 aataccggtg gttaaagcat gacgaagttc atctgtcgtg gtgacgttat agccaacgcc
    11161 acgaaacgca tccattaatt tgtcatacct tgcatggtgc aacagatccg ttggagatgg
    11221 tgcaccagcg ccactgagat caacaccgtc tcctctgtag atgccgccat tattaaaaat
    11281 aacgatcgtc accggcaggt tatatcgaca aatcgtttca atttccatcc cactgaaacc
    11341 aaaagcacta tcaccttcaa tggcgacaac cggagaacca gaagtcacgc tagcaccgat
    11401 ggcatagccc ataccgatgc ccatgacacc ccaggtacca caatccagac gacgacgtgg
    11461 tttatacata tcaataatat ttcgtgcatt atccagggta tttgcacctt cattaactaa
    11521 ataaatatcc tggttctcgc gcaatacgtc gcgcacagaa cttaatgcat taaagtaatt
    11581 taatggttga gtatctgtac ttaatttttc atgcattttt tgtgcatttt gctgcttgtg
    11641 gatatttaaa atatcgcgcc ataccagtgg agtcgtaaat gtgttttgtt tcagttctgc
    11701 cagcatacct tgcatactgg atgcaatatc accaatgact ggcacagcaa tggggcggtt
    11761 gctgtcaatt tcctgcggtt caatatccag ttgaataaac tgtgtatctg ccgcccatcc
    11821 ttttttaccg tgtgccaata accaattcag tcgtgcacca acaagcatga caacgtcagc
    11881 atttgccagg gcaaacgaac gcgcagctgc cgcagaaagt ggatgcgtat cttcaaggat
    11941 ccctttcgcc atagacattg gcaggaatgg aatctgagca ctttcaataa attcacgaag
    12001 ctgttcatca gcttgtgaat acgccgcgcc tttgccaagg ataattaatg gccgttcagc
    12061 ttttgctaaa agcgaaattg cgctagtgac tgacttcggg catggcaata atgctggcga
    12121 cggattttca actttaacaa tcgtggttaa cgcttcgtct ttttccatcg tcgcggccag
    12181 gacatttgct ggcaaatcaa gataaactcc gccagggcga cccgatacag agacccggat
    12241 agcgcgtgcc aatgcaatgc caagatcctg cggctgatta acgcgaaatg ctgctttggc
    12301 atacggtttt gccgcattca tttggtccag ctcttcataa tcaccttgct gtaggtcgac
    12361 gatcgcgcgg tcgctggagc cgctaatcat gatcatcgga aaaccattta ccgttgcgtt
    12421 ggccaatgcc gtcaaaccat tgaggaatcc tggcgcagaa actgtcaggc agatccccgg
    12481 tttttgggta agaaaaccgc ttgccgcagc ggcatagcct gccgactgct catgacgaaa
    12541 accaatataa cgaatgcctt ccgcctgggc atggcgtgcc atatccgtca caggaatacc
    12601 tacaacacca taaatagtgt caatattatt ctgttttaat gcttcaacga tgatatgcat
    12661 accatctgtc atttgaagtt gatctgacat gattaataac ctcgaaattt ttataaattg
    12721 ggagccagaa gcccccgtta atatcagatg gcgtggtttt gcttcattgc agcaatttca
    12781 tcgtcgctat aacctagctc ctgcaataca gcagcggtat gttcacctaa tagcggcgca
    12841 gctttaatat ccggcgtaaa agcagagaat ttcattggac aaccaacggt cagatatttt
    12901 ccacgcaacg gttgttccac ttcaacaaca ctgccacttt ggcgcaaaga gggatcaagt
    12961 gaaatttctt tcatacttaa aaccggtgca caaggaatat caaactgagt caaataggcc
    13021 accgcttcat gtttatcaat agtgacagtg tatttttcga tttcagcaaa aatatcgaaa
    13081 atatgtggct gtcgggcatg ggctgtactg tatgccggat cggtaatcca ttctggtttg
    13141 ccgatggctt tacaggtgtt ttcccagttt tgctcctgaa tagtgaaata aatataggcg
    13201 ttcggatcgg tttcccagcc tttacatttc aggatccagc caggctgacc gccaccacct
    13261 gcattaccac cgcggggaac tgcatcacca aatgtaccat tcggatactg cgggtattct
    13321 tccagataac ccaatttatc gagacgctgc tggtcacgta atttcacgcg gcaaaggttc
    13381 aatacggcat cctgcattga catggtgact cgttgcccac gccccgtttt ttcgcgatgc
    13441 agcaaagcag caagcaaacc gatcagcaaa tgcattccgg tgttgctgtc acccaacgct
    13501 gcagcgctta ccagcggcgg accatcccaa aaacccgtag tggatgccgc gccacccgct
    13561 gcctgagcaa cgttttcata ggcttttaca ttcacataag gcgaacactc atcaaaccct
    13621 ttgatcgaac caaaaatcag acgtggattg atttcttgaa tatgctccca ggtgaagccc
    13681 atgtgatcaa tggcccctgg atgaaagttc tcgactaaga tatcagcttc gcggatcagc
    13741 ttttccatta cctctttgcc ttccgctgtt ttggtattta actcaataga acgtttgtta
    13801 ctgttaagca tggtgaagta aagcgcatcg atatcaggaa tatctcgcag ctggtgacgc
    13861 gttacgtcac caacgccggg acgttcaatt ttaataacgt cagcgccaaa ccaggccagc
    13921 atttgagtac aagatgggcc agattgcaca ccggtgaaat cgagaacttt aattccttga
    13981 agtggagttg acatagcaat acctattagt taattaaata tgtgttaatt tagcgtttat
    14041 ttaaggcgta atatcttcta taaataaccc gcaaaatatc gtcgtagctg cactcgatat
    14101 ttttaaaatc ctgtatcaag tgctgaaaat catttcatcg ccacttccaa ttcctttctg
    14161 catggtaagt agtgaggacg aaaagaagaa tatgataaat attgattcgt ggtaatcaga
    14221 gagagtcgcg acatttgtga tgttattctt acaactgtaa gaagcgccgg tgatttacaa
    14281 gtaagggtat gattacgctt tttaaagcgt accataaaac ataacataat aaatgatttg
    14341 tgatgacacg ggattattgg ggtttacttt gaggaagata aaatgcgtgt ttatagaacc
    14401 gcgagcgcca aataatttta tgaccacaac ctgtcgtatt gtggtcataa aaaattgtcg
    14461 gctggaggga gttaaatcct ttacctcaat atactgcctg tcagcattag ttcacaaaca
    14521 gtgcttcgct gtcgacgatg attccatctt ccgcaccttt cagcgccagg tttgcctcgt
    14581 agtattgctt tttatcaagc agtttctgcg catcagcaag tgcattacga gtctgtttaa
    14641 gcggcatcag atattggttt tccattacgc caacaccggc caggcgaagt tcttccattg
    14701 cgcccttttt atcccctttc gccatttttt cattggcaat ttttatcgcg gcttcttttt
    14761 cgggagttgc tacataactc tcagaaattc cgacagatgc attaatgaca atatattggt
    14821 catcattgag attggtcttt ttacctggct tagcgaactt tgcccattcg gtactgtcat
    14881 ctgacagcaa agcggaagct tcattggtca gttcttttgc cttttctgga tcgccatgaa
    14941 acagagccag gcgcgctacc tgcacgtcac gcatcgcata taaaccttgt tcagagatac
    15001 gctctgctgc tgccgttttc tgggtttgct gaacttgctg agtttgctgt tgtgccgcta
    15061 ccggtgcatt atcagcagcc catacagttg aagatgccag aattgctgtg accatcgtag
    15121 ccataattaa acgtttcata cttacctcat tctttaacag ttttagaaaa cgccgccatc
    15181 atattgggtg agcatgaaat gagaaatcag agagcaacgg tcattttgaa agggttatct
    15241 tacagttgta gttattatcg caagaagtat tttagtctta caattgtagg aatctgcttc
    15301 ctgtcgcaga gaactattct tatgtaccac aaagagatgt catttattat atcgatgtaa
    15361 atattgatta attatatgta aatacagcca taacatcgta ggttctcagt gaaccatttt
    15421 caggataact ttctatgaaa gtaaacttaa tacttttcag cttattttta ttggtctata
    15481 ttatggcatg caatgttttt gcattttcca tttctggtgg tgtaagtgag aggagctata
    15541 aagagactga aaaaacatca gcgatgacga ccacacactc tacaaaactt cagccatcac
    15601 aggcgatttt gtttaagatg agagaagatg cgccaccatt aaacctcaca gaagaaatca
    15661 cgcctactta tccgacaaag gcgaattatc ttattcatcc tgtgcgatag cgtctgtcac
    15721 atggcaggtg aacaatcatg tctgatgctg atgtgaacac ctgcccaaat gagccatcct
    15781 gacccactat cgcctgccat accccaccat aaagcgaatc atcaagccac aagccggggc
    15841 aagaaacata aatatctccg tcactagttc attaccgcca gttaaccaca tggtgaagta
    15901 ataaatgagt gcagcgagga tcaccatgcc gaagaaagaa gagaccgccg ataccacgtt
    15961 cagtacctga ccgatgtagc cgcttacgca gacaatacac agggcgagaa acatccataa
    16021 ataaatcata gctcaacctc ctgccgcgct aaaaaacctg taacttcagt cactttaata
    16081 gtaagacaat ccttaacctc tggcaatttt tgctaagcat caatgaaaac agcatgttaa
    16141 atgcaagact gttgtgtacg gaaaaatatt tactttgcac gattaataat cagtagctga
    16201 aagcagtcag cgagtgataa agtacagata ccgcattcat gctcctcgtg gttatgtcct
    16261 gactagtctt tacacacttt acaggaacca ttgtcgtaca tgatggccca accaattgag
    16321 tgtaccgctg tcgacatgga atcttctgcg atacaacaat tcgtatctac agaaggtaac
    16381 tatgtttcca caatgcaaat tttcccgcga gtttctacat cctcgctact ggctcacatg
    16441 gtttgggctt ggtgtactct ggctttgggt acagcttcct tatcctgttc tctgctttct
    16501 cggcacgcgt attggcgcaa tggcgcgacc attcctgaaa cgtcgtgaat ctatcgcccg
    16561 taaaaacctg gaactttgtt tcccgcagca ttctgcggaa gaacgcgaga agatgattgc
    16621 cgaaaacttt cgttcactcg gcatggcgct ggtagaaacc ggcatggcat ggttctggcc
    16681 cgacagtcgc gtacgtaaat ggtttgatgt tgaagggttg gataacctta aacgcgcaca
    16741 aatgcaaaat cgcggcgtaa tggttgtcgg cgtccatttt atgtcgctgg aactgggcgg
    16801 ccgcgtgatg ggactgtgcc aaccaatgat ggctacctat cgtccacata ataatcagct
    16861 gatggaatgg gtgcagaccc gtgggcgcat gcgctctaac aaagcgatga tcggcagaaa
    16921 taatctgcgc ggcattgtcg gtgcactgaa gaaaggtgaa gcggtatggt ttgctcccga
    16981 tcaggattat ggtcgtaaag gcagctcctt cgcgccgttc tttgcggtgg aaaatgtcgc
    17041 cacaaccaat ggcacctatg ttctctcccg tctctctggc gcagccatgt tgaccgtaac
    17101 gatggtaaga aaagcggatt acagcggata tcgtttgttc atcaccccag agatggaagg
    17161 ctacccgaca gatgaaaatc aagccgctgc ctatatgaac aagattatcg agaaagagat
    17221 catgcgcgca ccggagcagt acctctggat ccactgtcgc tttaaaacgc gcccggtggg
    17281 agaatcgtcg ttgtacattt aacaaactgc tcttactctt tccctcctca aatcggccat
    17341 aataacctca tggtttttat ggcttttttc ttaaggtttt ttccttcgct gaatatctaa
    17401 ttattaccgt cagaaattaa actgtcgccg atatgagaca cctgtaagtt actaaaagta
    17461 aataagaaaa tgcctcttgt ctcgtttcag ttttaggcgt acattagcgc cgtctcgagc
    17521 agtttagctc agaattctgg ggtgatgccc acggtaaaat acagggcttt taaggtcgct
    17581 ttgcccagtg tcaactcact gtatcaggtg taatgaagtc attcaggcgt aacagcaatt
    17641 acgcggagag atgtaaagtg aaatatttct ttatgggcat ttcttttatg gtcatcgttt
    17701 gggccggtac ttttgccctg atgatctaaa agcaaactgt gcaatgaaaa acaggagcca
    17761 tcaggctcct gtttgcattt ctgacgacgg tgtttattcc gcgttttcgt gaatatgttt
    17821 gctgctggcg ggtagtaaac cgtcggcacg gaacatcgct ttaatccctc tgatggcctg
    17881 acgaatacgg tcgcggtttt caatcagtgc aaagcgaaca tgcgtatcac catagtcgcc
    17941 aaagccaatc cccggcgaga cacagacctt cgcttcgtta agcaatttct tggcaaatac
    18001 cagcgagccc atggcagcat acggttccgg tattttcgcc cagacataca tcgaagcctt
    18061 cggcatttca actatccagc ccgcttcatg cagcccttta accaatacat cacggcggcg
    18121 tttgtactgt tcggcaatgt cgcgcacgca ctgttgatcg ccctccagcg ccgcaatcgc
    18181 cgccacctgc aacggcgtaa aggtgccgta atcgtgatag cttttaatac gagccagggc
    18241 gctgaccagc gttttgttgc caaccataaa gccgatacgc cagcccgcca tgttgtagct
    18301 tttcgacagc gtaaagaact cgactgccac atcgcgtgca cccggtacct gcatgattga
    18361 cggcgctttc cagccatcgt agacgatatc ggcataggcc aggtcgtgga ccaccagcac
    18421 atcgtagcgt ttcgccagcg ccacaacctt ttcgaagaac tccagctcca cgcattgcgc
    18481 ggttggattc gacgggaagc cgaggatcat catcttcggt ttcggataac tttcacgaat
    18541 ggcgcgctcc agttcgttga agaaatcgac accttccacc agcggcactg agcgtacctg
    18601 cgccccggca atcaccgcgc cataaatatg gatcgggtaa cttggattcg gcaccagcac
    18661 cgtgtcacca tgatccagcg tcgccagcat cagatgcgcc aggccctctt tcgaaccaat
    18721 agtgacgatg gcttctgatt ccgggtcgat ttcaacgtcg tagcgatcct gataccagcg
    18781 ggaaatggcg cgacgtaacc gcggaatgcc gcgtgaagtg gagtaaccat gcgtgtcctg
    18841 gcgctgggcc acagtacata atttttcgac gatatgcggc ggagtcgcac cgtccgggtt
    18901 acccatgctg aaatcgataa tatcttcgcc gcgccgacgc gcagccattt tcagttcagc
    18961 ggtgatgtta aaaacgtagg gcgggagacg atcaatgcgc gtaaagcgac gttcagggcg
    19021 agtgtcagcc ataatttcct cagattaacg ttagcgcccg gaccgtccga gcgacgctgc
    19081 cacaatggtg gctgttttga aaatagcctg attaatttct gtctgtccag cgttttagaa
    19141 catttttatc aatggcttta aatgaggaac tccacttcaa aaacaggaaa tttttctacg
    19201 ctaacaagaa aattaccacc aattttatta acattataat ttcaataaat ttaccagcca
    19261 gaagtgcatt atcaagagat acattgctaa tacaccattt atctttcaat ccccttttaa
    19321 atttatggtt tttcctcaaa aacggcctgc tggtcatcag ccttcaggtt acctatcata
    19381 gaggtttaat ccttattcag agtcacccgt gcacgaaata ttcaacatgc tgctggcggt
    19441 cttcgatcgg gcagcgttaa tgcttatctg cctgttcttt ctcatccgta tccgcctgtt
    19501 tcgcgagctg ttgcacaagt cggcacactc cccaaaagag ttgcttgctg ttaccgccat
    19561 tttctcgctg ttcgccctgt tcagcacctg gtccggcgtt cccgtagaag gctcgctggt
    19621 gaacgtacgt attatcgcgg tgatgtccgg cgggattctg tttggcccgt gggtaggcat
    19681 cattaccggc gtgattgcgg gtattcaccg gtatttaatt gatatcggcg gcgtgacggc
    19741 gatcccctgc tttatcacca gcattctggc gggttgtata tcaggctgga taaacctgaa
    19801 aatccccaaa gcacagcgct ggcgcgtcgg tattatcggc ggcatgttgt gtgagacgtt
    19861 gaccatgatt ctggtaattg tctgggcacc aactaccgcg ttggggatcg atatcgtctc
    19921 taaaatcggc attccaatga tcctcggtag cgtctgtatc ggctttattg tgcttctggt
    19981 gcaaagcgtt gagggcgaaa aagaggccag cgccgcgcgg caggccaagc tggcgctgga
    20041 tatcgccaac aaaacgctac cgctgtttcg ccatgtcaat agcgagtcat tacgcaaggt
    20101 ctgcgaaatt atccgcgatg acattcacgc cgatgcggtg gcgattacta ataccgatca
    20161 tgtgctggcc tatgttggcg tgggtgaaca taactatcag aatggcgatg acttcattag
    20221 cccgactacc cgtcaggcga tgaattacgg aaaaatcatc attaaaaaca atgatgaagc
    20281 ccaccgcaca ccagagattc attccatgct ggtgatccca ttgtgggaga aaggcgttgt
    20341 gaccggaacg ctgaaaattt actactgcca cgcgcatcag ataacctcgt cattacagga
    20401 aatggcggtt ggtctgtcgc aaatcatctc cacgcaactg gaggtttcac gcgccgagca
    20461 gctacgtgaa atggcaaata aggcagagct tcgcgccctg caaagcaaaa ttaatcccca
    20521 ttttctgttt aacgctctga acgctatttc atcgtcaatc cgtctgaatc cggataccgc
    20581 tcgccagttg atctttaatc tgtcgcgtta tctgcgctat aacattgaat taaaagacga
    20641 tgagcaaatc gatatcaaaa aagagctgta tcaaattaaa gactatattg ccattgagca
    20701 ggcccgcttt ggtgacaagc tgacggttat ctatgatatt gatgaagagg tgaattgctg
    20761 cattcccagc ctgctgatcc agccgttggt ggagaacgcc attgtccacg gtattcagcc
    20821 ttgcaaaggt aaaggcgttg tcaccatcag cgttgcagag tgcggaaatc gggtacgcat
    20881 tgcggtgcga gataccgggc acggcatcga tccaaaggtg attgagcggg tcgaagcgaa
    20941 tgaaatgccg ggcaataaaa ttggcctgct gaatgtccat catcgcgtga agttattgta
    21001 tggcgagggg ctgcatatcc gccgcctgga gccggggacg gaaattgcgt tttacattcc
    21061 taaccaacgc accccagtcg cctcacaggc tacgttattg ctttgagccg gagtgatatt
    21121 gtgaaagtca tcattgttga agacgaattc ctggcacaac aggaactgag ctggctaatt
    21181 aaagagcaca gccagatgga gattgtcggc acctttgacg acggtctgga cgtgttgaag
    21241 tttttgcagc ataaccgcgt cgacgccatt tttctggata tcaatattcc gtcgctggat
    21301 ggcgtgttgc tggcgcaaaa catcagccag ttcgcccata aaccgtttat tgtgttcatc
    21361 accgcgtgga aagaacatgc ggtagaagcg tttgaactgg aggcgtttga ctacattctc
    21421 aaaccgtatc aggagtcacg tattaccggg atgctgcaaa aactggaagc ggcctggcaa
    21481 caacagcaga ccagcagtac gcctgccgcg acggtaacgc gtgagaatga caccattaat
    21541 ctggtgaaag atgagcgaat aatcgtcacg ccaattaacg atatctatta cgccgaagcg
    21601 cacgagaaaa tgacctttgt ctatacgcgg cgtgaatcct acgtaatgcc gatgaacatt
    21661 accgaatttt gcagcaaact gccgccgtcg cattttttcc gctgccatcg ctcattttgt
    21721 gtcaatctga acaaaatacg cgaaatcgaa ccgtggttta ataacaccta cattctgcga
    21781 ctgaaagatc tggattttga agtgccggtc agccgcagca aagtgaaaga atttcgccag
    21841 ttaatgcatc tttaatcggg aactttcatg aaagcaccag gcttgcccgc cgatcaacaa
    21901 tttttcgccg atctgttcag cggcctggtg cttaactcgc aactactggg gcgcgtctgg
    21961 tttgccagcc agcctgcctc gttaccggtg ggcagtttat gtattgattt tccccgtctg
    22021 gatatcgtgc tgcgcggcga atacggcaac ctgctggaag caaagcagca gcgaatggtg
    22081 gaaggagaaa tgctgtttat tccggcacgc gcggctaatt taccgatcaa caacaaaccg
    22141 gtgatgctgt taagcctggt gttcgcaccg acctggcttg ggttatcgtt ttacgatagc
    22201 cgcaccacgt cgttgttgca tcctgctcgc cagatccagc ttcccagcct gcaacgcggt
    22261 gaaggtgaag cgatgcttac cgccctcact catcttagcc gttcgccgct ggagcagaat
    22321 atcattcagc cactggtgtt aagtttgctg catctttgcc gcaacgtggt gaatatgccg
    22381 ccgggtaatt cgcaaccgcg cggcgatttt ctctatcaca gcatttgtaa ctgggttcag
    22441 gataattata cccagccgct cacccgcgag agcgtggcgc agttttttaa tatcacgccc
    22501 aatcatctgt caaaactgtt tgctcagcat ggaacgatgc gttttatcga gtatgtgcgt
    22561 tgggtgcgaa tggcgaaggc gaggatgatt ttgcagaaat atcatctgtc aattcatgaa
    22621 gtggcacagc gttgcggttt tccggatagc gactattttt gtcgcgtttt ccggcgtcag
    22681 tttggtctga cgccgggaga gtacagcgcc cgttttcagg gctaacgtca gaaggttaat
    22741 tctatttcca gcagcgtcag gatactttgt gcatcttgcg cggcaaacaa cgactggcgg
    22801 aagtttttat tcaccagttt acgcgccagc tgcgagaaga ctttcacatg attcatccct
    22861 tcgttagcac ccagcgtcag catgatcacc agttcgactt cgcccatttc tgactgccag
    22921 tcaatcggtt tcgccagccg ggcaatgctg atactggaat gacggatcca ctgagatttg
    22981 gtgtgcggga tcgctacgcc aaaaccaacg ccggtggtaa caatctcttc ccgctgccag
    23041 acatcttctt ccagctcaaa cggatgttca gtgcgcccgt taacgccgag gttgccgcac
    23101 aggaactgga tcgcctgctc tttattgcta aaatcctgat caacaaagat attctccagc
    23161 gccagcagtg ggcgaacgtc ttcttccggc gtaaaggcgg tgagtaacgc ttcaatttcc
    23221 tgcgcactgc ggcattcaca tgcctgacgc gccagttccc gacacgcctc gctatccagt
    23281 tgacgaagct ggcttttcac cgccggaata cgcgggctac tcatactcag ctcatccagg
    23341 cccagcccaa gcagtagcgg cagataacgg ctttcaccgc ccagttcacc gcaaatgcct
    23401 acccatttgc cccgctgatg cgcagtggta actatttgct gcaacatgcg caggaacgat
    23461 ggcgtaatcg ggttatatag cggcgatacg cgcgggttat tacgatcgac cgcatacaga
    23521 tactgggtca tatcgttgga gccgatactg aagaaatcga cctcatcgca gaagtggtcg
    23581 atgatgtagc acaccgacgg cacttccacc atgatcccaa gcgtaatcgt ctctgcatga
    23641 cgcaggccat cgcgcttaag ctcaacgatc gctttttgga tctcgccctt cacccataag
    23701 atctgatcga gactgtggac catcgggatc atcaactggg cgttgccaaa actggcggcg
    23761 cgcaaaatcg cccgtagttg agtgcggaac aggccagcaa attccgggta aatacgtacc
    23821 gcacgatagc cgaggaacgg gttctcttcc tggggaatat tcagataagg aatgctttta
    23881 tcgccaccga tgtccattgt gcggaagata atcggcttgt cgcccgctgc cagtagcacc
    23941 tgctggtagg cttcaaattg ctcctgctcg tccggcgcgc tgtcgcgatc catatagagc
    24001 atttcagtac ggaacagtcc aacgccttcc gcgccgttgg caaacgcgcc tggcgcttcc
    24061 agagcggtgc cgatattcgc cgcaatatca atacgcttgt tatcacggga ataggccagc
    24121 tgcgcggcgg cctgcgcctg ttgtttttgg cgtttatccg ccagcgtctg tgcgacctga
    24181 taataaccgc tcaccgcgtc attcgggtta atcgccagca cgccgcactg ggcgtcaagc
    24241 accgccggtt gcccggcata acgggcaatc gcatccagcg gcaggccgct cagtaccggg
    24301 atcgccgagg cgcgggccag aatcagggta tgcgaggtgc gcccagtttt ctccagaatc
    24361 atgcctgcaa gattttttaa atcgaggctc aaaaactggc ttggggttaa atcctcggct
    24421 accagaatag tcggtttttc cagcaccaga ttgttgcgcg gcttcagttc cggccaggtg
    24481 atatgcagca actgttcgct aatatcgcga atgtcgctaa cacgttcgcg cagataatca
    24541 ctggcagaag cagaaagttt ggcgcaaacc tgctccatat tgctgatgat cgccgccccc
    24601 agcccttgat gctgttctgt catcagacga cggatattgc ccgcgaattc atcatcctga
    24661 atcagcgaca aatgggcgct aaggatagtt ttgctttcgc cgtcactctc acgcaattgc
    24721 tggttcagtt gctcggcaag cgttgcaagg ctgtgctcca gccgggtgga atcttgcgca
    24781 ctggcgggga ttgcccgata actgtcgagg ctgtcgcttt gtaacagggt cagcgtaccc
    24841 acgccgacgc tgcttgccag cacattgccg tacagtaaat ccgggttcag gcggcttaat
    24901 gaacgcggca gcggatgcgc cgtcagttct gcctgcgttg gctggatgct gtcgctgtcg
    24961 ataaagcgca cctggatgta ctcttccaac acgcgctgcg cctgctcttc atcgctgccg
    25021 ctaatgttca ggctgcaact gtcattaaat aaagtaccgg tgccaatcag cgccagcgag
    25081 cttttcgcat cggcctttgc gttctggcga tggttgataa aggtgatttc gctttgccac
    25141 tggctgcact gttctttaag ttcccacgcc ggacgagcat gaagaccgtt tggcaaagga
    25201 cagagaaatt gaatcgttaa cataaccgct ccgggttaat caggagatca tctgaaatcc
    25261 gtcagttgaa caaccgtctc acgcgtaaga cgtttaataa gggcagataa aagctgctgc
    25321 atctgcaaaa tgtcacggca atcggcaatc gatgcggcgc aatgtccgtg gcgggttgct
    25381 ggccccatca ccactgtagg cacgccggtg ccggttaagt gcaccgctcc gccgtccgtg
    25441 ccgccgttgc tgaacatatc tgcctgtaac ggcacgccaa tttctgccgc cacggtttcg
    25501 atccacgcgg taagttttgg cggcgcaatc agcgacttgt cgcttaacac cagcatcggc
    25561 ccgttacaaa tctgacgatg gttagccgcg ccataatcaa agtttttcgc ccagcaggcg
    25621 gtatcaagca caatggcgac atccggcgac accgcgcggg tggcagtttg cccgccgcgt
    25681 acccccacct cttcgctgga actggccacc agccacactt ccgcaggcag ttcagcgctg
    25741 tgtagttcgc gcagtaacgt caccagcagg tagcaaccga ggcggtcatc aaaggctttc
    25801 cccatcaccc gctggtgagg gagaacctga aaagttgtat caaaggtgac gcgatcgcct
    25861 ggacgaattc ccgcctgcat cacttcgtca tacgagcgcg taccaatgtc cacgcgcatg
    25921 gcgctgacgt cattcccctg ccggtcgccg tcaagcaggc ctggaatttt gcactcttca
    25981 cgggtggtga tgcgcaccgg ctgcagctgg cgggcagcca tgcgcacgtt gccaaccggc
    26041 agcacatcaa ttgccccttc gcgggagatg ctgcgcacca taaatcccac ttcgtccata
    26101 tgggcgcaga tcatcacctt cggccctgtc gattcattga ggcggatcag caccgatccc
    26161 agaccatcaa atcgcacttc tttttgcagg cgatccgctt cttccagcag gatctgccgc
    26221 acttcctgtt ccgaggaggc gatcgcatct gcctcgctca acgcttttaa tagcgataaa
    26281 tccattatgc ctctcccgtg agcaacactg ttttcggcat ggcgtagagc acttctgcgc
    26341 cttgcggggt aaccagcaca acatcttcga tgcgcacgcc cccttgccct ggcaaataaa
    26401 tccccggctc cacggtcagc aacatgcctg gctgtagcgt cgtggtgtcc cgcggtgaaa
    26461 aacgcggatc ttcatggact tcaatgccga tagcgtgacc agtgttatga ccgaaatagt
    26521 cgccaaatcc agcctcggta atgacccggc gcgcggcgtc gtcaatctgc tggcagcgca
    26581 cgccggggcg aattgcagag attgccgcga gctgtgcctg caggacaatc tgatagacgt
    26641 caaacagcgg gtgagattcg gcgctcaccc cttcgccatt caccagcaag gtgcgcgtca
    26701 tatcagagca gtagccctga tacagcgcac caaaatcgag agtgacaaac tcgcccgctg
    26761 caacaatctt gtcgctggct ttgccgtgcg gcagcacccc gcgccagccg ctggcgacaa
    26821 tggtgtcaaa agaggctttt tctgcgccct gctggcgcat aaaccactcc agttcagcgg
    26881 ctatctcgcg ctcgctcatc cccgcctgaa taaagcggcg aatatgctcc gctccgcgat
    26941 cggcaatccc acaggcgagg cggattatct ccacctcctc tggcgttttg atttgccgca
    27001 gcacatccgg cgtggcgcta accagtttcg cattgagttc agacttccag cggtgcgcgg
    27061 tttcccaact cacctgctgg ccttcaaaac cgagcgtttg caactgctca tcggcaatga
    27121 tttgattgac gatagtggta agcgtgttcg tcgcgtcaag caaatgcagc tggtagcctt
    27181 gcgcacgggc ttccacctca acgaaatagc tcgaatctac cagaatgtgc gcactttcac
    27241 ggctaataac cacatagcct gatccggtgg agatccccag atgcggctgt ttgttctgcc
    27301 gtgaggagag aagcactgca tccagttgtt gctccttaag ccagtcgcgc agcgaagcga
    27361 gtaatgtcat ctggattttc cttcttacag gctatcgatt aacaatttgc ctttacggaa
    27421 catcatcaga cgcaggaaca ccaccatcag cgcagttatg actgccccca gcgcgatccc
    27481 cgccatatag acgccaaggt tagtgaccag cggccatgcc cagatagcgg attccgggaa
    27541 ccattgcact gcgcccagcc agacagcggc ggttgagccg acaatcgcgc cgaccatata
    27601 cgacggaatg gcggtgatgg ggctttccag cgcaaacgga atcgcaccct cactaatccc
    27661 cataaaggca aggaacatcg cggtcttacc ctgcggataa agttgagcgt tgaacaggcg
    27721 tttgccggtt aaacgacggt caataatggt cgccagcccc agaccaatcg gaggaataac
    27781 gatagcgata gaacgagcgg tgaccggtaa tacgtggtca gtggtaaagc tgaaggcaac
    27841 gaaacctgcg gctttgttga tcgggccacc aaggtcgatt gctgtcgccg cggcgatccc
    27901 cattgcgtac atcagcgcgc ccttctcacc tgcggcagtc agcacggtac ggataacgcc
    27961 gttgatccag ccgccaaagg gggtaatgac gtagtacatc gccagcatga caaaaatggc
    28021 ggaaagaatc ggtagcaaaa atgtggtttt gaacgctaac aggaaatccg gtaactggat
    28081 tttctggttc atccacttca caaggtaacc cgcgacgata gaaataatca gcgcaccaat
    28141 gaaggtggac ggcaccggcg aagaggtcgc ccattgcata gtgctgggat cgaagttcag
    28201 cagttgcgtc ggctgggtag acatcaagcc gccgataaaa ccagccggga acgccagttt
    28261 gccaccgata gagttcgcca caaaagcagc aaacatcgga atggcaaaac caaacaacac
    28321 gccgccgaag gactgcgaca gccaggcaaa tttcagtaag gagaggtcga aaccggagaa
    28381 tttcccgcta ttaagagcat ccatgatgcc gatctcagca ggaattttaa gccagctata
    28441 agcaatcagc tggctgaaag cgaggatcac accgcccata attaaggtcg gcaccatgcg
    28501 tgaaatccct gacatcacat gctgcgggag ttcaccccag aagctgcttt tagaggcctg
    28561 cggattctta actgccgctg ccgcaccgga tgcgccaggc acaacggttg cactgcgttt
    28621 tttaatggcc ataacaatta tccctgtcga atattactgt tgttcagagg caatcatctc
    28681 ttcgatttct ttgatgatgc ccgcagcgtt tttaattgcg tcctgcaaag tgatttcata
    28741 aacgtcgcgt gattcgaaac gctcattatc ttccggggta actgccacgg agtggatgat
    28801 gatggttgct tcggcgatat cctgcgccgt caggcgattc tggataccgt ccgcgccctg
    28861 ggtttcaatt ttcacttcat aaccggcttc taccgccgct tcttccaacg cctgagcggc
    28921 cataaaggtg tgagccaggc ccattgggca ggcacataag gcaatcagtt tcttactcat
    28981 cgttaattcc tcattcagtg atagttgaca agtgaaatta tgaacgtgca aaacaaatcg
    29041 ccgttaccag acaaataatg catttactgg agaattaatc ccgctgtacg gaagtgtgac
    29101 gcaggtcggc cttgtgaggg gacacaaaga aaaattgaat taactgtatg atttaaacga
    29161 ttatcgggag agttacctcc cgatataaca ggaaggattt acagaatgtg ccctaaggtc
    29221 tggcgtaaat gtgcaccgga accgagaaga cccggattgt catggacgat gagatacacc
    29281 ggaatatcat ggacatattc tttaaagcgc cctttatctt caaatgcagc acggaaacca
    29341 gaggctttga agaactcaag gaagcgcggc acgataccgc ccgcaataaa cacgccgcca
    29401 aatgtcccga gattgagcgc cagattgccg ccaaaacggc ccataatgac gcaaaacagc
    29461 gacaacgcgc ggcggcaatc ggtacagctg tcagccagcg cgcgttcggt aatatctttt
    29521 ggcttgagat tttctggcag gcggttgtca gctttcacaa ttgcgcgata caaattcacc
    29581 agcccagggc cagaaagcac gcgctccgcc gaaacatgac caatttccgc acgcaatatt
    29641 tcgaggataa tggcctcttc ttcactattc ggcgcaaaat caacgtgacc gccttcgccc
    29701 ggcaagctta cccaacgctt atcgacatgg accagatgcg caaccccaag ccctgttccg
    29761 gcaccgtaaa ccgcaatagg tttaccttct accggttctg cgccaccaaa ctgaatcaga
    29821 tgctcttttt tcagcatcgg gatcgccatc gatacagcgg taaaatcgtt aataatttcc
    29881 agatggctaa aaccgagatt ctttttcatt tcggcaattg agaacgccca ggtatggttg
    29941 gtcattgcca cccagtcacc ggtaattggg caagcgatgg caatacagcc gtctttcacc
    30001 tcgaccttat gttcttcaag ataaacgcga atgaccgctt cgaggctggg gtaatcaagc
    30061 cctgaatagg tcttagcctg cgagatttca ccactggcaa tatcacacag agcaagacgt
    30121 gcgttggtgc cgcccacatc accgactaat gcatacttta tcattcttca actgctccgc
    30181 taaagtcaaa ataattcttt ctcacactgt aaatacctgg gggcataaca acaacgccgg
    30241 aaaggcaggc tccctgtaaa tatcgatctg ggtcacacat ttactttatc gtttcagcac
    30301 caattgcagc gatgcctttt tgcaagctgg gcaaactaag tatctgaccc cgcataagga
    30361 atagaacatg ctccatccgc gagccagaac catgttgtta ttatcgctcc ccgccgtggc
    30421 aattgggatt gcgtccagtc ttattctgat tgtggtgatg aaaatcgcct cggtattaca
    30481 gaatttgctc tggcaacgac tgccgggaac tctggggata gcccaggatt cacctctctg
    30541 gatcatcggt gtattaacgc taacgggtat tgcggtgggg ttggttatcc gtttcagcca
    30601 gggtcatgcc ggaccagacc ccgcctgtga accgctgatc ggcgcaccag ttccgccctc
    30661 tgcgctacca ggacttatcg tagcattaat tctcggtctt gctggcggcg tcagcctggg
    30721 gccggaacat ccgatcatga ccatcaatat cgcccttgcc gtcgccattg gcgctcgtct
    30781 gttaccgcgc gtcaaccgaa tggagtggac tattttagcc tctgccggaa ccatcggcgc
    30841 gctgtttggc acacctgttg cagcggcgtt gatattttcg caaaccttaa atggcagtag
    30901 tgaagttccg ctatgggatc gtctctttgc gccgttaatg gcggcagcag ctggtgcact
    30961 aactaccgga ttatttttcc atccccattt ttcactgccc attgcgcatt acggacagat
    31021 ggaaatgacc gatattctca gcggtgcaat tgtcgcggcg attgccatcg cagcagggat
    31081 ggtcgccgta tggtgcttac cacggttgca cgcgatgatg aatcaaatga aaaatccggt
    31141 gctcgtgctg ggtattggcg gatttattct cggtattctg ggggttattg gtggaccagt
    31201 ttcgctgttt aaagggctgg atgagatgca gcagatggtg gcaaatcagg ctttcagcac
    31261 cagcgattac tttttgctgg cggtaattaa acttgccgcc ctggtcgttg ctgccgccag
    31321 tggctttcgc ggtgggcgaa tcttcccggc agtgtttgtc ggcgtggcat tagggttgat
    31381 gctgcatgag cacgtacccg ccgtaccagc ggcaataacc gtttcttgcg ctattctcgg
    31441 catcgtgctg gtggtaacac gcgatggctg gttaagtctt tttatggcgg cggtcgttgt
    31501 acccaatacc acattgctac cgctgctctg tatcgtcatg cttccggcat ggctgttatt
    31561 agcaggtaag ccgatgatga tggtcaatcg tccgaagcaa cagccacccc acgataacgt
    31621 ttagcaaaaa atgctctcct ttatgattta agagttatgg cgatgatacg gggctttacc
    31681 tccccgtaat attgcgttaa caggccgctg acggcttcga tcgtgaagga gaataacaat
    31741 gttcaggtca ctgtttctgg cggccgccct gatggcattt accccgcttg cagcaaacgc
    31801 aggtgaaatc accctactgc catcaatcaa attacaaatt ggcgatcgcg atcattacgg
    31861 taattactgg gacggtggtc actggcgcga ccgtgactac tggcatcgca attatgagtg
    31921 gcgcaaaaac cgttggtggc gtcatgataa tggctatcat cgtggctggg ataagcgtaa
    31981 agcgtatgag cgtggctatc gtgaaggctg gcgcgatcgt gacgatcatc gcggaaaagg
    32041 ccgcggacat ggacaccgcc attaaacaca ttcgccaatg gagcacaatg cctgatgcga
    32101 cgctagcgcg tcttatcagg cctacaaacc ggatctttaa cgcgtagggc ggataaggcg
    32161 tttacgccgc atccgccaat agtgccagat gcgacgctca ttcaactaca atcccagcgc
    32221 cgtccccacc aacaaccaga tattcagcgc cacgaccagc actacaatca cccagcctgt
    32281 ctgttttacg cgtttgctgt tcaccagatc gcccatcaac ttgctgtcac tggtgaaaat
    32341 cagcagtgga accagcgcca gggcgatacc aaaacttaac agcacctgac tcataaccag
    32401 aatccgtgtc ggatctaatc ccatcagaat gacaataaat gacggcagca tggtgactgt
    32461 acgacgcacc cacagcggga tatggaagcg aatgaacccc tgcatcacca cctgccctgc
    32521 cagtgtcccc actaccgttg aggacagtcc ggcagcaacc agacttaacc caaagaccgt
    32581 tgccgcagca tggcttaaca gcggttgcag cgtcagataa gcctcatcaa gatcggcaac
    32641 accagtatga ccagaaaagt ggaacgccgc cgcagctgta gccatcatcg ccagattgac
    32701 aaaaccggca atagtcatgg cgatagccac atcccatttg gtggcggaat aacgttgttg
    32761 acgcgaaccg ccatgtaaat gctgagtgag cgaggagtgc aaataaatca catgcggcat
    32821 aatcgtcgcc cctaacacgc ctgctgccag gaagaccgct tccgaagtag gtaaactcgg
    32881 gatcaccatt cctttaccca gctgcgccag gttaggctgg gagaaaatca actcgacaat
    32941 gtaagccgcg gcaacaaaca acagtaaccc gccaatcact ttctccagcg gtttttgccc
    33001 gcgacgttgc agcattaaaa tcaggaaagt cgcgatcccc gtcagcaccg cgccctgcaa
    33061 caacgaaaca ccaagaatga gtttaaaacc gatcgccgca ccaataaatt ccgccaggtc
    33121 ggttgccatc gcaataattt ctgcctgaac ccaatagaac cacactacgg gacgcggata
    33181 gtgatcgcga atctgctccg ccagattttt accggtggca atccctagtt tggcagagag
    33241 gatctgaatc agcatcgcca tcaggttggc ccaaacgaca acccacagta gctgatagcc
    33301 gaagctggca cccgcctgaa tattggtcgc aaagttaccg ggatcgatat aaccaatcgc
    33361 cgcaatgaac gcaggtccca ttaatgcgag cctcatcttg cgcgccgccc gtccgctgct
    33421 actctcaacg cgatagttcg tcatcttgtg cctctaaaac atagcctttg ctatgtttca
    33481 tgctatgata aacgagaatg attatcaaat tcatttaaat ggattgtggt gatttctgtg
    33541 atagaccagg attatgacta cgaaaagatt gatgacttga atgttatggt tatgtttaat
    33601 gttagcacat ttacataact ttcagcttcc atacacaaca tagcagaaat gtatgacaga
    33661 tcactatttt tgaagcctgt cacaggacgt cattatagtg tgtgtcagat ctcgttttcc
    33721 ttaaccatgt tacatagaat gtgcacggaa atttaacctg cctcatattt ggagcaaata
    33781 tggaccgcgt ccttcatttt gtactggcac ttgccgttgt tgcgattctc gcactgctgg
    33841 taagcagcga ccgcaaaaaa attcgtatcc gttatgttat tcaactgctt gttatcgaag
    33901 tgttactggc gtggttcttc ctgaactccg acgttggttt aggcttcgtg aaaggcttct
    33961 ccgaaatgtt cgaaaaactg ctcggatttg ccaacgaagg gactaacttc gtctttggta
    34021 gcatgaatga tcaaggcctg gcattcttct tcctgaaagt gctgtgccca atcgtcttta
    34081 tctctgcact gatcggtatt ctccagcaca ttcgcgtgtt gccggtgatc atccgcgcaa
    34141 ttggtttcct gctctccaaa gtcaacggca tgggcaaact ggaatccttt aacgccgtca
    34201 gctccctgat tctgggtcag tctgaaaact ttattgccta taaagatatc ctcggcaaaa
    34261 tctcccgtaa tcgtatgtac accatggctg ccacggcaat gtccaccgtg tcgatgtcca
    34321 tcgttggtgc atacatgacc atgctggaac cgaaatacgt cgttgctgcg ctggtattga
    34381 acatgttcag cacctttatc gtgctgtcgc tgatcaaccc ttaccgtgtt gatgccagtg
    34441 aagaaaacat tcagatgtcc aacctgcacg aaggtcagag cttcttcgaa atgctgggtg
    34501 aatacattct ggcaggtttc aaagttgcca ttatcgttgc cgcgatgctg atcggcttta
    34561 tcgccctgat cgctgcgctg aacgcactgt ttgccaccgt gactggctgg tttggctaca
    34621 gcatctcctt ccagggcatt ctgggctaca tcttctatcc gattgcatgg gtgatgggtg
    34681 ttccttccag tgaagcactg caagtgggca gtatcatggc gaccaaactg gtttccaacg
    34741 agttcgttgc gatgatggat ctgcagaaaa ttgcttccac gctctctccg cgtgctgaag
    34801 gcatcatctc tgtgttcctg gtttccttcg ctaacttctc ttcaatcggg attatcgcag
    34861 gtgcagttaa aggcctgaat gaagagcaag gtaacgtggt ttctcgcttc ggtctgaaac
    34921 tggtttacgg ctctaccctg gtgagtgtgc tgtctgcgtc aatcgcagca ctggtgctgt
    34981 aagaccatac ataaaaaagc cggggataat tcccctaatg ccagtcagtt aagcaactga
    35041 ctggctcttt ttcggggctg tggggtattt ccagggcctc tcctttacca ctctcgggaa
    35101 ggcccttccc cttctcgtcg gta
//
LOCUS       DAJVSY010000024        35068 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.024, whole genome shotgun sequence.
ACCESSION   DAJVSY010000024 DAJVSY010000000
VERSION     DAJVSY010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 35068)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35068)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35068
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.024"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..4093)
                     /locus_tag="OQQ19_001061"
     CDS             complement(<1..4093)
                     /locus_tag="OQQ19_001061"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HCS1802760.1"
                     /translation="MADNPDPSSLLPDVFSPATRDWFLRAFKQPTAVQSQTWHVAARS
                     EHALVIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQ
                     RNLQLPLKGIADERRRRGETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGL
                     SATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASSTGEDSHA
                     GREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVD
                     AAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLEL
                     GIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVEC
                     MFAGRLENLTPPHNPLDVLAQQTVAAAAMEALQVDEWYSRVRRAAPWKDLPRRVFDAT
                     LDMLSGRYPSGDFSAFRPKLVWNRETGILTVRPGAQLLAVTSGGTIPDRGMYSVLLPE
                     GEEKAGSRRVGELDEEMVYESRVNDIITLGATSWRIQQITRDQVIVTPAPGRSARLPF
                     WRGEGNGRPAELGEMIGDFLHLLADGAFFSGTIPPWLAEENTNANIQGLIDEQRNATG
                     IVPGSRHLVLERCRDEIGDWRIILHSPYGRRVHEPWALAIAGRIHALWGADASVVASD
                     DGIVARIPDTDGKLPDAAIFLFEPEKLLQIVREAVGSSALFAARFRECAARALLMPGR
                     TPGHRTPLWQQRLRASQLLEIAQGYPDFPVILEILRECLQDVYDLPALERLMRRLNGG
                     EIQISDVTTTTPSPFATSLLFGYVAEFMYQSDAPLAERRASVLSLDSELLRNLLGQVD
                     PGELLDPQVIRQVEEELQRLAPGRRAKGEEGLFDLLRELGPMTVEDLAQRHTGSSEEV
                     ASYLENLLAVKRIFPAMISGQERLACMDDAARLRDALGVRLPESLPEIYLHRVSYPLR
                     DLFLRYLRAHALVTAEQLAHEFSLGIAIVEEQLQQLREQGLVMNLQQDIWVSDEVFRR
                     LRLRSLQAAREATRPVAATTYARLLLERQGVLPATDGSPALFASTSPGVYEGVDGVMR
                     VIEQLAGVGLPASLWESQILPARVRDYSSEMLDELLATGAVIWSGQKKLGEDDGLVAL
                     HLQEYAAESFTPAEADQANRSALQQAIVAVLADGGAWFAQQISQRIRDKIGESVDLSA
                     LQEALWALVWQGVITSDIWAPLRALTRSSSNARTSTRRSHRARRGRPVYAQPISPLVS
                     YNTPNLAGRWSLLQVEPLNDTERMLALAENMLDRYGIISRQAVIAENIPGGFPSMQTL
                     CRSMEDSGRIMRGRFVEGLGGAQFAERLTIDRWRDLATQATQTR"
     gene            complement(4186..4833)
                     /gene="rnt"
                     /locus_tag="OQQ19_001062"
     CDS             complement(4186..4833)
                     /gene="rnt"
                     /locus_tag="OQQ19_001062"
                     /EC_number="3.1.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HCS1802761.1"
                     /translation="MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITL
                     KMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKV
                     VRKGIKASGCNRAIMVAHNANFDHSFMIAAAERASLKRNPFHPFATFDTAALAGLALG
                     QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLPAAEEV"
     gene            complement(4936..5343)
                     /gene="gloA"
                     /locus_tag="OQQ19_001063"
     CDS             complement(4936..5343)
                     /gene="gloA"
                     /locus_tag="OQQ19_001063"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008500591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HCS1802762.1"
                     /translation="MRLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFV
                     GYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGP
                     VKGGTTVIAFMEDPDGYKIELIEEKDAGRGLGN"
     gene            complement(5424..6521)
                     /gene="nemA"
                     /locus_tag="OQQ19_001064"
                     /pseudo
     CDS             complement(5424..6521)
                     /gene="nemA"
                     /locus_tag="OQQ19_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416167.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="N-ethylmaleimide reductase"
     gene            complement(6558..7157)
                     /gene="nemR"
                     /locus_tag="OQQ19_001065"
     CDS             complement(6558..7157)
                     /gene="nemR"
                     /locus_tag="OQQ19_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416166.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NemR"
                     /protein_id="HCS1802763.1"
                     /translation="MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGS
                     FYHYFRSKEAFGVAMLERHYTAYHQRLTELLQSGEGNYRDRILAYYQQTLNQFCQHGT
                     ISGCLTVKLSAEVCDLSEDMRSAMDKGARGVIALLSQALENGRENHCLTFCGEPLQQA
                     QVLYALWLGANLQAKISRSFEPLENALAHVKNIIATPAV"
     gene            7260..7499
                     /locus_tag="OQQ19_001066"
     CDS             7260..7499
                     /locus_tag="OQQ19_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1289 domain-containing protein"
                     /protein_id="HCS1802764.1"
                     /translation="MAEQLEFFPVQSPCRGICQSDERGFCRGCFRSRDERFNWNKMSD
                     GEKQEVLRLCRQRLMRKLRANKPASSDEPEQPSLF"
     gene            7548..8444
                     /locus_tag="OQQ19_001067"
     CDS             7548..8444
                     /locus_tag="OQQ19_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase family oxidoreductase"
                     /protein_id="HCS1802765.1"
                     /translation="MVQRITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDL
                     GVTTVDHADIYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITD
                     RDHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNF
                     TPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLF
                     NDDYFQLLRDELAVVAEELNAGSIEQVVYAWVLRLPSQPLPIIGSGKIERVRAAVEAE
                     TLKMTRQQWFRIRKAALGYDVP"
     gene            8525..9046
                     /gene="sodC"
                     /locus_tag="OQQ19_001068"
     CDS             8525..9046
                     /gene="sodC"
                     /locus_tag="OQQ19_001068"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Cu-Zn] SodC2"
                     /protein_id="HCS1802766.1"
                     /translation="MKRFSLAILALVVATGAQAASEKVEMNLVTSQGVGQSIGSVTIT
                     ETDKGLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAESAGGHLDPQNTGKHE
                     GPEGAGHLGDLPALVVNNDGKATDAVITPRLKSLDEIKDKALMVHVGGDNMSDQPKPL
                     GGGGERYACGVIK"
     gene            complement(9047..11058)
                     /locus_tag="OQQ19_001069"
                     /pseudo
     CDS             complement(9047..11058)
                     /locus_tag="OQQ19_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000994342.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
     gene            complement(11058..11915)
                     /locus_tag="OQQ19_001070"
     CDS             complement(11058..11915)
                     /locus_tag="OQQ19_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310380.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HCS1802767.1"
                     /translation="MSIKTIKYFSIIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEK
                     VSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKAN
                     NEANRRRHLSQNFISAEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAPVSG
                     WVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKT
                     LRGHVSSIGRAIYDQSVESDSSLIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSG
                     TTCSIAVGQ"
     gene            complement(11981..12154)
                     /locus_tag="OQQ19_001071"
     CDS             complement(11981..12154)
                     /locus_tag="OQQ19_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000670993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1656 domain-containing protein"
                     /protein_id="HCS1802768.1"
                     /translation="MKFMLNATGLPLQDLVFGASVYFPPFFKAFAFGFVIWLVVHRLL
                     RGWIYAGDIWHPL"
     gene            12355..12789
                     /gene="slyA"
                     /locus_tag="OQQ19_001072"
     CDS             12355..12789
                     /gene="slyA"
                     /locus_tag="OQQ19_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416159.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator SlyA"
                     /protein_id="HCS1802769.1"
                     /translation="MESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLP
                     PDQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISE
                     MEAVINKTRAEILHGISAEELEQLITLIAKLEHNIIELQAKG"
     gene            complement(12836..13303)
                     /gene="slyB"
                     /locus_tag="OQQ19_001073"
     CDS             complement(12836..13303)
                     /gene="slyB"
                     /locus_tag="OQQ19_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein SlyB"
                     /protein_id="HCS1802770.1"
                     /translation="MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGT
                     IVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQGV
                     QSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR"
     gene            13577..14686
                     /gene="anmK"
                     /locus_tag="OQQ19_001074"
     CDS             13577..14686
                     /gene="anmK"
                     /locus_tag="OQQ19_001074"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HCS1802771.1"
                     /translation="MKSGRFIGVMSGTSLDGVDVVLATIDEHRVAQLASLSWPIPVSL
                     KQAVLDICQGQQLTLSQFGQLDTQLGRLFADAVNALLKEQNLQARDIVAIGCHGQTVW
                     HEPTGVAPHTLQIGDNNQIVARTGITVVGDFRRRDIALGGQGAPLVPAFHHALLAHPT
                     ERRMVLNIGGIANLSLLIPGQPVGGYDTGPGNMLMDAWIWRQAGKPYDKDAEWARAGK
                     VILPLLQNMLSDPYFSQPAPKSTGREYFNYGWLERHLRHFPGVDPRDVQATLAELTAV
                     TISEQVLLSGGCERLMVCGGGSRNPLLMARLAALLPGTEVTTTDAVGISGDDMEALAF
                     AWLAWRTLAGLPGNLPSVTGASQETVLGAIFPANP"
     gene            14784..15113
                     /gene="mliC"
                     /locus_tag="OQQ19_001075"
     CDS             14784..15113
                     /gene="mliC"
                     /locus_tag="OQQ19_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416156.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C-type lysozyme inhibitor"
                     /protein_id="HCS1802772.1"
                     /translation="MSMKKLLLICLPVLLTGCSAFNQLVEHMQTATLEYQCDEKPLTV
                     KLNNPRQEVSFVYDNQLLHLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNC
                     QLQNPQR"
     gene            15172..15828
                     /gene="pdxH"
                     /locus_tag="OQQ19_001076"
     CDS             15172..15828
                     /gene="pdxH"
                     /locus_tag="OQQ19_001076"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HCS1802773.1"
                     /translation="MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACE
                     AKLADPTAMVVATVDEHAQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLL
                     FPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKF
                     LELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
                     "
     gene            15957..17231
                     /gene="tyrS"
                     /locus_tag="OQQ19_001077"
     CDS             15957..17231
                     /gene="tyrS"
                     /locus_tag="OQQ19_001077"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HCS1802774.1"
                     /translation="MASSNLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTA
                     DSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVD
                     KIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQR
                     LNREDQGISFTEFSYNLLQGYDFACLNKQYGVVLQIGGSDQWGNITSGIDLTRRLHQN
                     QVFGLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFT
                     FMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAAKRITECLFSGSLSA
                     LSEADFEQLAQDGVPMVEMEKGADLMQALVDSELQPSRGQARKTIASNAITINGEKQS
                     DPEYFFKEEDRLFGRFTLLRRGKKNYCLICWK"
     gene            17290..18153
                     /gene="pdxY"
                     /locus_tag="OQQ19_001078"
     CDS             17290..18153
                     /gene="pdxY"
                     /locus_tag="OQQ19_001078"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal kinase"
                     /protein_id="HCS1802775.1"
                     /translation="MMKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNH
                     TQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKA
                     ANPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNN
                     VEEAVLAARELIAQGPQIVLVKHLARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQ
                     PVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAMQEYELQVVAAQDRIA
                     KPEHYFSATKL"
     gene            complement(18197..18802)
                     /gene="gstA"
                     /locus_tag="OQQ19_001079"
     CDS             complement(18197..18802)
                     /gene="gstA"
                     /locus_tag="OQQ19_001079"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase GstA"
                     /protein_id="HCS1802776.1"
                     /translation="MKLFYKPGACSLASHITLRESGKDFTLVSVDLMKKRLENGDDYF
                     AVNPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVNSISRYKTIEWLNYIA
                     TELHKGFTPLFRPDTPEEYKPTVRAQLEKKLQYVNETLKDEHWICGQRFTIADAYLFT
                     VLRWAYAVKLNLEGLEHIAAFMQRMAERPEVQDALSAEGLK"
     gene            complement(18908..20410)
                     /gene="dtpA"
                     /locus_tag="OQQ19_001080"
     CDS             complement(18908..20410)
                     /gene="dtpA"
                     /locus_tag="OQQ19_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/tripeptide permease DtpA"
                     /protein_id="HCS1802777.1"
                     /translation="MSTANQKPTESVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIM
                     AVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY
                     ALVAWSGHDAGIVYMGMAAIAVGNGLFKANPSSLLSTCYEKNDPRLDGAFTMYYMSVN
                     IGSFFSMIATPWLAAKYGWSVAFALSVVGLLITIVNFAFCQRWVKQYGSKPDFEPINY
                     RNLLLTIIGVVALIAIATWLLHNQEVARMALGVVAFGIVVIFGKEAFAMKGAARRKMI
                     VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGLAVEPEQYQALNPFWIIIGSP
                     ILAAIYNKMGDTLPMPTKFAIGMVMCSGAFLILPLGAKFASDAGIVSVSWLVASYGLQ
                     SIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGANLIGGYVAGMMAVPDNVTDP
                     LMSLEVYGRVFLQIGVATAIIAVLMLLTAPKLHRMTQDDAADKAAKAAVA"
     gene            complement(21021..21656)
                     /gene="nth"
                     /locus_tag="OQQ19_001081"
     CDS             complement(21021..21656)
                     /gene="nth"
                     /locus_tag="OQQ19_001081"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HCS1802778.1"
                     /translation="MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATD
                     VSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG
                     EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVE
                     EKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKVDI"
     gene            complement(21656..22351)
                     /gene="rsxE"
                     /locus_tag="OQQ19_001082"
     CDS             complement(21656..22351)
                     /gene="rsxE"
                     /locus_tag="OQQ19_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxE"
                     /protein_id="HCS1802779.1"
                     /translation="MSEIKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLA
                     TTLVLTLTNLTISTLRHWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFI
                     PLIVTNCIVVGRAEAFAAKKGPALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDG
                     ADALLGSWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAGKYLIDERMKKRRTEAA
                     AERALPNGETGNV"
     gene            complement(22355..22975)
                     /gene="rsxG"
                     /locus_tag="OQQ19_001083"
     CDS             complement(22355..22975)
                     /gene="rsxG"
                     /locus_tag="OQQ19_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxG"
                     /protein_id="HCS1802780.1"
                     /translation="MLKTIRKHGITLALFAAGSTGLTAAINQMTKTTIAEQASLQQKA
                     LFDQVLPAERYNNALAQSCYLVTAPELGKGEHRVYIAKQDDKPVAAVLEATAPDGYSG
                     AIQLLVGADFNGTVLGTRVTEHHETPGLGDKIELRLSDWITHFAGKKISGADDAHWAV
                     KKDGGDFDQFTGATITPRAVVNAVKRAGLYAQTLPAQLSQLPACGE"
     gene            complement(22979..24037)
                     /gene="rsxD"
                     /locus_tag="OQQ19_001084"
     CDS             complement(22979..24037)
                     /gene="rsxD"
                     /locus_tag="OQQ19_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxD"
                     /protein_id="HCS1802781.1"
                     /translation="MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTL
                     VQILLASVSTLLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGT
                     VFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQ
                     VIFSGHTASGADMNTLHLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGA
                     GWQWVNLAWLAGGLWLLWQKAIRWHIPLSFLVTLALCATLGWLFSPETLAAPQIHLLS
                     GATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANIT
                     VPLIDYYTRPRVYGHRKG"
     gene            complement(24038..26260)
                     /gene="rsxC"
                     /locus_tag="OQQ19_001085"
     CDS             complement(24038..26260)
                     /gene="rsxC"
                     /locus_tag="OQQ19_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxC"
                     /protein_id="HCS1802782.1"
                     /translation="MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFV
                     IPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSA
                     LAELSVIIDADGEDCWIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQG
                     GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKP
                     QAISMLRAVLADSNDISLRVIPTKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNV
                     GTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRHLLNDARFCPSADQM
                     VIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLL
                     PQQLYWFSKGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEE
                     KRAAEAKARFEARQARLEREKAARLERHKSAAVQPAAKDKDAIAAALARVKEKQAQAT
                     QPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVEAAIARA
                     KARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAIE
                     AAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDP
                     RKAAVEAAIARAKARKLEQQQTNAEPEEQVDPRKAAVAAAIARAQAKKAAQQKVVNED
                     "
     gene            complement(26253..26831)
                     /gene="rsxB"
                     /locus_tag="OQQ19_001086"
     CDS             complement(26253..26831)
                     /gene="rsxB"
                     /locus_tag="OQQ19_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxB"
                     /protein_id="HCS1802783.1"
                     /translation="MNAIWIAVAAVSLLGLAFGAILGYAARRFAVEDDPVVEKIDEIL
                     PQSQCGQCGYPGCRPYAEAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQE
                     LTPARMVAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTH
                     CISLQPVAETPDSWKWDLNTIPVRIIPVEHHA"
     gene            complement(26831..27412)
                     /gene="rsxA"
                     /locus_tag="OQQ19_001087"
     CDS             complement(26831..27412)
                     /gene="rsxA"
                     /locus_tag="OQQ19_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017456621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxA"
                     /protein_id="HCS1802784.1"
                     /translation="MTDYLLLFVGTILVNNFVLVKFLGLCPFMGVSKKLETAMGMGLA
                     TTFVMTLASICAWLIDTWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRL
                     LGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFSAAVGFSLVMVLFTAIRERLAV
                     ADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL"
     gene            complement(27489..27929)
                     /locus_tag="OQQ19_001088"
     CDS             complement(27489..27929)
                     /locus_tag="OQQ19_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707526.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2569 domain-containing protein"
                     /protein_id="HCS1802785.1"
                     /translation="MTTTTPQRIGGWLLGPLAWLLVALLSTTLALLLYTAALSSPQTF
                     QTLGGQALTTQILWGVSFITAIAMWYYTLWLTIAFFKRRRCVPKHYIIWLLISVLLAV
                     KAFAFSPVEDGIAVRQLLFTLLATALIVSYFKRSSRVKATFVNP"
     gene            complement(28015..28230)
                     /gene="ydgT"
                     /locus_tag="OQQ19_001089"
     CDS             complement(28015..28230)
                     /gene="ydgT"
                     /locus_tag="OQQ19_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription modulator YdgT"
                     /protein_id="HCS1802786.1"
                     /translation="MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAAD
                     HRRAELVSGGRLFDLGQVPKSVWHYVQ"
     gene            complement(28503..28628)
                     /gene="blr"
                     /locus_tag="OQQ19_001090"
     CDS             complement(28503..28628)
                     /gene="blr"
                     /locus_tag="OQQ19_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division septum protein Blr"
                     /protein_id="HCS1802787.1"
                     /translation="MNRLIELTGWIVLVVSVILLGVASHIDNYQPPEQSASVQHK"
     gene            28841..29881
                     /locus_tag="OQQ19_001091"
     CDS             28841..29881
                     /locus_tag="OQQ19_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310359.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCS1802788.1"
                     /translation="MSDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVK
                     ADWPTVTVVSEPKHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLS
                     QARELDALAKSLGRVLSVFHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVR
                     DRWREQGGPGSGIWYDLAPHLLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSY
                     PQRRVILHGTMLAAAESARYIVHGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRD
                     GVLTRVEGEERVEETLLTVPGNYPAYYAAIRDALNGDGENPVPASQAIQVMELIELGI
                     ESAKHRATLCLA"
     gene            complement(29916..30917)
                     /gene="add"
                     /locus_tag="OQQ19_001092"
     CDS             complement(29916..30917)
                     /gene="add"
                     /locus_tag="OQQ19_001092"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HCS1802789.1"
                     /translation="MIDTTLPLTDIHRHLDGNIRPQTILELGRQYNISLPAQSLETLI
                     PHVQVIANEPDLVSFLTKLDWGVKVLASLDACRRVAFENIEDAARNGLHYVELRFSPG
                     YMAMAHKLPVAGVVEAVIDGVREGCRTFGVQAKLIGIMSRTFGEAACQQELEAFLAHR
                     DQITALDLAGDELGFPGSLFLSHFNLARDAGWHITVHAGEAAGPESIWQAIRELGAER
                     IGHGVKAIEDRALMDFLAEQQIGIESCLTSNIQTSTVAELAAHPLKTFLEHGIRAGIN
                     TDDPGVQGVDIIHEYTVAAPAAGLSREQIRQAQINGLEMAFLSAEEKRALREKVAAK"
     gene            complement(31020..32192)
                     /gene="malY"
                     /locus_tag="OQQ19_001093"
     CDS             complement(31020..32192)
                     /gene="malY"
                     /locus_tag="OQQ19_001093"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional maltose regulon transcriptional
                     repressor/cystathionine beta-lyase MalY"
                     /protein_id="HCS1802790.1"
                     /translation="MFDFSKVVDRHGTWCTQWDYVADRFGTADLLPFTISDMDFATAP
                     CIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSE
                     LIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCNMGKLEAVLAK
                     PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWS
                     NVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTA
                     HIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNID
                     DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR"
     gene            complement(32202..33794)
                     /gene="malX"
                     /locus_tag="OQQ19_001094"
     CDS             complement(32202..33794)
                     /gene="malX"
                     /locus_tag="OQQ19_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS maltose transporter subunit IICB"
                     /protein_id="HCS1802791.1"
                     /translation="MTAKTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSS
                     HDVITLIPVLGNPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPLGLARENKGVAAFAGF
                     VGYAVMNLAVNFWLTNKGILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWM
                     LHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINS
                     AGDFGPMLFGTGERLLLPFGLHHILVALIRFTDAGGTQEVCGQTVSGALTIFQTQLSC
                     PTTHGFSESATRFLSQGKMPAFLGGLPAAALAMYHCARPENRHKIKGLLISGLIACVV
                     GGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTDGNIIDFVVFGILHG
                     LSTKWYMVPVVAAIWFVVYYAIFRFAITRFNLKTPGRDSEVASSIEKAVAAAPGKSGY
                     NVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVNVQALKDNRAIGVVQLNQHNLQV
                     VIGPQVQSVKDEMAGLMHTVQA"
     gene            33969..34997
                     /gene="malI"
                     /locus_tag="OQQ19_001095"
     CDS             33969..34997
                     /gene="malI"
                     /locus_tag="OQQ19_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mal regulon transcriptional regulator MalI"
                     /protein_id="HCS1802792.1"
                     /translation="MATAKKITIHDVALAAGVSVSTVSLVLSGKGRISTATGERVNAA
                     IEELGFVRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLHG
                     GKDGEQLAQRFSLLLNQGVDGVVIAGAAGSSDDLRRMAEEKAIPVIFASRASYLDDVD
                     TVRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSD
                     WVLECTSSQKQAAEAITALLRHNPTISAVVCYNETIAMGAWFGLLKAGRQSGESGVDR
                     YFEQQVSLAAFTDATPTTLDDIPVTWASTPARELGTTLADRMMQKITHEETHSRNLII
                     PARLIAAK"
BASE COUNT         8784 a         9005 c         9123 g         8156 t
ORIGIN      
        1 ggcgcgtttg cgtggcttgt gtcgccagat cgcgccatcg gtcaatagtc agacgttcag
       61 cgaattgcgc gccacccaga ccttctacaa aacgacctcg cataattcgc ccggagtctt
      121 ccatacttcg acaaagcgtt tgcatcgatg gaaacccgcc agggatattt tcggctatca
      181 ccgcctgacg actgatgatg ccgtagcggt cgagcatatt ttccgccagc gccagcatcc
      241 tttcggtatc gtttagtggc tccacctgca ataacgacca gcgtccagcc agatttggtg
      301 tgttgtaaga taccagcggc gagatgggtt gcgcatagac aggacgtcca cgacgagccc
      361 ggtgactgcg gcgagttgag gtgcgtgcgt tggaactgct gcgggtgagg gcgcgtaacg
      421 gtgcccaaat gtcgctggtg atgacgcctt gccagaccag cgcccataac gcctcttgca
      481 gggcagagag atcaaccgat tcgccgattt tgtcgcgtat ccgttggctg atttgttgtg
      541 caaaccaggc tcctccgtca gccagaacag cgactatcgc ttgttgcagc gccgaacgat
      601 tcgcctgatc cgcttcggcg ggagtgaacg attctgcagc atattcctgt agatgcagtg
      661 ccaccaggcc gtcatcttca cccagttttt tttgccccga ccagataacc gcaccggttg
      721 ccagtaattc atcgagcatt tctgacgaat agtcgcgtac gcgggcaggc aggatctggc
      781 tttcccagag tgaggcgggt aaaccgactc cggcaagctg ttcgatcacc cgcatcacgc
      841 catctacgcc ctcataaacg cctggcgatg ttgaggcaaa gagcgccggg ctaccatcgg
      901 tggcgggtaa tacgccctga cgttccagca gcaatcgcgc ataggtcgtg gctgcaacgg
      961 gacgcgtcgc ttctctggcg gcttgcagcg agcgcaaacg cagacgacga aatacttcat
     1021 cgctcaccca gatgtcttgt tgcagattca tcaccagacc ctgttcacgc agttgctgaa
     1081 gctgctcttc gacaatggca ataccgagac taaactcatg agccagttgt tcagccgtga
     1141 ccagagcatg agcccggaga tagcgcagaa agaggtcgcg aagcgggtaa ctgactctat
     1201 gtaaataaat ctctggcaat gactctggta gtcgtacgcc gagggcatca cgcagcctgg
     1261 cggcatcatc catacaggca agacgctcct gtccgctaat catcgctggg aagattcgtt
     1321 ttactgcaag aagattttcc agatacgacg caacctcttc actgctgcct gtatgccgtt
     1381 gcgccaggtc ttcaacggtc attggcccca gttcgcgcag caggtcgaac aatccttctt
     1441 cacctttcgc tcttctgcca ggagccagtc gttgcaactc ttcttccacc tggcgaatga
     1501 cctgcgggtc gagtaattcc cccggatcga cctgtccgag tagattgcgc agtaactcgc
     1561 tgtccagcga cagtacggat gcccggcgct ctgccagcgg ggcgtcgctc tggtacataa
     1621 attccgcgac atagccgaac aataaacttg tggcgaaagg cgagggcgta gtggtcgtta
     1681 catcggatat ttgaatttcg ccaccgttca ggcgacgcat caaacgttcc agtgcgggaa
     1741 gatcataaac atcttgcaga cattcgcgta ggatttcgag aatgaccgga aaatctggat
     1801 atccctgagc gatttccagc aactgactgg cgcgcagccg ttgttgccaa agcggggtgc
     1861 gatggcccgg agtgcgcccc ggcattaata atgcccgcgc ggcgcattcg cgaaaacggg
     1921 cggcgaaaag tgccgagctg cctaccgcct cgcggacaat ttgcagcaac ttttctggtt
     1981 caaacaaaaa aatcgcggcg tcgggcaatt taccatcagt gtcaggaatg cgcgcaacaa
     2041 tgccgtcatc actggcgacc acagacgcgt cagcgcccca tagggcatgt attcgcccgg
     2101 caatcgccag cgcccagggt tcatgcaccc gtcttccata gggagagtgc aaaataatac
     2161 gccagtcgcc aatttcatca cggcaccgtt cgaggaccag atggcgactc cccggaacga
     2221 tgcccgtcgc gttgcgttgc tcgtcaatca acccctgaat attggcgttc gtattttctt
     2281 ctgccagcca cgggggaata gtcccggaaa agaacgcgcc atccgccagt aaatgaagaa
     2341 aatcgccgat catctcgcct aattcagccg gacgtccgtt accttcacca cgccagaagg
     2401 ggagccgggc agaacgaccc ggagcaggag tcacaatcac ctgatcgcgg gtgatttgct
     2461 ggatccgcca tgaggtagcg ccgagagtga taatgtcgtt cacccgcgac tcatatacca
     2521 tctcctcatc cagttcaccc acccgccgcg aaccggcctt ttcttcacct tcgggtaata
     2581 acacgctata catgccacga tccggaatgg tgccgccgct ggtaaccgcc aacaattgag
     2641 cgccaggtcg gacggtcaat atcccggtct ccctgttcca gaccagtttg gggcgaaaag
     2701 cagaaaaatc gccagaggga tagcgcccgg aaagcatatc cagcgtggcg tcaaaaacac
     2761 gtcttggcag atctttccac ggtgcggcac ggcgtacgcg ggagtaccat tcgtctacct
     2821 gtaatgcctc catcgccgcg gcggcaacgg tttgctgcgc aaggacgtcg agtggattat
     2881 gcggcggtgt caggttttcc agcctgcctg cgaacataca ctctacaatg actgcggaat
     2941 cgactaagtc acgccgggta cgagggaaaa acagcccttt agatacaccg ccaacctgat
     3001 gtccggcgcg accaatgcgt tgtaacccac tggcaacaga aagcggcgtt gccacctgaa
     3061 tcaccagatc cactgcgccc atatcaatcc ccagttcgag actggaggtt gcgaccacgc
     3121 agcgtaactc acccgatttc agcgcctgct cggtgattgc tcgttgttct ttagagacgg
     3181 agccgtggtg tgagcgggca ataaaaacgt cgctactttg tacacggtta gaggttgcgc
     3241 cggaggtcga ctcgaaatgg gccgcatcaa cggcgataga cggggaacgc tgtaagcgtg
     3301 cggcgtaaag ctcatttaat cgtgccgtca gtttttccgc cagcccacgt gaattagtaa
     3361 agacaatggt cgagcgatgg cgcaacactt catcaaggat acccgtttca atatatggcc
     3421 agatggagcc ttcccggccg gcatggctgt cttcgccggt gctgctggcg accgatgaga
     3481 catcatccat attggcgacc ggtacgacaa ttcgtatctg cggatggcgc attgcgggcg
     3541 ggttgactac cgtaaccggg cgatcgccac caagaaaggc tgccacatcg ctggctgagc
     3601 gcacagtggc agaaaggcca attcgctgtg ctgaggtgtg gagcagcgca tcgagccgct
     3661 ccagacttaa cgccagatgc gcaccacgtt tactgcccgc taccgcgtgg acttcatcaa
     3721 taattaccgt ttcgccgcgc cgccgccgtt catcggcaat acccttcaac gggagctgca
     3781 agttgcgctg aacgtcggtg cccagagctt ttatcggtga aatatagagg atgcgtgagg
     3841 ttttacgctt atgcgcctcg cgggtatctt cgccgccttc gcggaagagc cgatcgaggg
     3901 cgtagagaaa tgctgccagc gttttcccgg agccggtcgg tgcaatcacc agcgcatgtt
     3961 cgcttcgcgc cgccacatgc caggtttgcg actggacagc ggtcggctgt ttaaaggcgc
     4021 gaagaaacca gtcgcgggtc gccggtgaaa acacgtccgg caggagcgat gaagggtctg
     4081 gattatctgc cattaacgct attccccgtg aatatcatgc aggatgcgtg gaatagcctc
     4141 actatagatg cctgaatcat tgcatgtcat caggcatcga ctcgattaca cctcttcggc
     4201 ggcaggtagc ggccagcctc ccagacgttt ccagcggttg acgatttcac aaaacagcac
     4261 agcagtgcgt tcggtgtcgt acagcgcgga gtgcgcctgg gtgctgtcga agtccatgcc
     4321 agcggtctgg caagcctttg acaatacggt ttgtccgagt gccagcccgg ccagtgcagc
     4381 agtgtcaaaa gtggcgaaag ggtggaacgg gttacgtttc agtgaggcgc gttctgcggc
     4441 ggctatcata aagctgtgat caaaattggc attgtgcgcc accataatgg cgcggttaca
     4501 gccgctcgct ttaatacctt tacgtacaac tttaaaaatt tcgtgcagcg cctcgtattc
     4561 gctgaccgcg ccacgatcgg gatcgttcgg gtcaatgccg ttgaaggcga gggcttctgg
     4621 ttgcaaattt gcgccgacaa atggttcgac gtggaaatgt aatgtggtgt ccggcatcag
     4681 ccagccttgt tcatccattt tcagggtgat ggcggcaatc tcaagcagcg catcggtttt
     4741 ggcgttaaat ccggctgttt caacatcgat cacaacagga taaaaaccac gaaaacggtc
     4801 gcacagaccg gtaagttgag cgttatcgga catctgattc tcttaatacg gataaattgc
     4861 agcgcgcatt atgacaaata ttacttgtcg atgcagtaaa gatgcgggcg cgatgagttc
     4921 acgcccggca ggagattagt tgcccagacc gcgaccggcg tctttctctt cgattaactc
     4981 aattttgtaa ccgtccggat cttccataaa cgcgataacc gtagtaccgc cttttaccgg
     5041 acccgcttca cgggtcacgt tacccccgtt ttgacggatt ttttcgcacg cttcagcggc
     5101 gttatctacg ctaagcgcga tgtgaccata agcagtgccg agttcgtatt tatccacgcc
     5161 ccagttgtag gtcagttcaa tcaccgcttc ttcggtttcc gggccgtagc caacaaacgc
     5221 cagtgagtat ttgtattccg ggttttcgct ggtacgcagc agtttcatgc ccagcacttt
     5281 ggtataaaaa tcgatggagc gttgcaaatc gccaacgcgc agcatggtat gaagaagacg
     5341 catcttttta tcctcaaaat ggctaacaga ttcaaaatgt tgttttagta tagcggcggc
     5401 tttacgccgc tcgcaatgtt ggattacaac gtcgggtaat cggtatagcc ttccgcgccg
     5461 ccaccgtaga aactttcggc acgctgtggg ttaagctcag ctttgcgctg caagcgggcg
     5521 accagatccg ggttcgcaat ccagtcacga ccaaatgcca ccgcatcaat taaccctttg
     5581 ccgatcagcg tttcagcttt ttctactgtg tatgcacctg cgccgataat cggaccgtgg
     5641 aaacgggcgc gtactttttc gcggaacgca tcagtatacg gttcaccccc cgcccaatct
     5701 ggttctgaca tatgcagata agcaatgccg cgtttaccca gttgttcaat cagatacagt
     5761 gcatcggctt cttcattcgg gccgttatcc gtgttctgga aagtaccgat tggcgaaatg
     5821 cgaatgccaa tgcgatcggc accccattct tcaatcccgg catcgaccac ttccagtacc
     5881 agacgtgcgc gattttccac gctgccgccg tactgatcgg tacgatggtt tgaagaagga
     5941 gaaaggaact gatgcagcaa ataaccgtga gcagagagga gctctaccag atcaaaaccg
     6001 gcttcacgcg cgttagcaat ggcctgacgg aaatcattga cgatacctgg aatctcttct
     6061 agttcaagcg cacgcggcat ggatgtttca acacggatcg cctgaccatt ttcatcgcgc
     6121 agagaagtac gtgttcccgc gctaagtgct gaaggcgcta ccggtgcctg accgccaggt
     6181 tgcaggctgg cgtgagaaat gcgtccggtg tgccacagct acacggccat atgaccattt
     6241 tcagcatgaa cgccagcggt gatttttttc catgcggcaa tttgctccgg actatggatg
     6301 ccaggcgcac ctgcatatcc ttttacctgg gcagaaattt gcgtggcttc actaataatc
     6361 aaaccggcac tggcacgttg gcgatagtat tccgccatca acggggtagg aatgtcaccc
     6421 ggttcaatac tgcgcagacg cgtcagcggt gccataaaaa tacggtttgc cgccgtgatc
     6481 gcgcccactt tcagtgggga atacagtttt tcagatgaca taaaggctcc cggtcgtctg
     6541 gtgataaaaa atgcctgcta aacggcaggc gtcgcaataa tgttttttac atgggccagc
     6601 gcgttttcca gtggctcgaa actgcgcgaa attttggcct gcagattcgc acccagccat
     6661 agtgcgtaaa gcacttgtgc ctgttgtagc ggttcgccac aaaaggttaa acaatggttc
     6721 tcacggccat tttccagcgc ctgagagagc agggcgatca cgccgcgagc acctttatcc
     6781 atcgcgctgc gcatatcttc tgacagatcg cacacttcgg cagagagttt tactgtcagg
     6841 caaccactga tggttccatg ttggcaaaac tggttcagtg tttgctggta ataagccagt
     6901 atgcggtcgc ggtagttacc ttcgccggat tgcagcaact cagtcagtcg ctggtgatat
     6961 gcggtgtaat gacgctcaag catggcaacg ccaaacgctt ctttagagcg aaagtagtga
     7021 tagaaggacc ctttcggcac ttcagcggtt tttagtaatt cgcttagccc catcccggtg
     7081 aatccacgtt gcaggcaaag ttgctcgccc gtcgccagga gatgttcgcg agtatcatgt
     7141 tcggtgtgtt tgttcatgcg ttggagtgta gtagaccagt cggtctagtg caagcaaagt
     7201 tgctactttg gacattaaca gcttcaataa tggtaataat cttatctgag gagggcgaag
     7261 tggcggagca attagagttc tttcccgtcc agagcccgtg ccggggaatt tgccagtctg
     7321 acgaacgcgg gttttgtcgc ggctgttttc gtagtcggga tgagcgtttt aactggaata
     7381 aaatgagcga tggcgaaaaa caagaggtgc tgcgcctttg tcggcagcga ttaatgcgca
     7441 aattacgcgc aaataagcca gcgtcatcag acgaaccgga gcaaccatca ctcttttgaa
     7501 cctaatcttg cgtatactcc tctcatatct gataagagga agcgattatg gttcagcgta
     7561 ttactattgc gccgcaaggc ccggagtttt cccgttttgt gatgggctac tggcgattga
     7621 tggactggaa tatgtccgcc cgccagctgg tcagttttat tgaagagcat ctggatctcg
     7681 gcgtgaccac cgtggaccat gctgatattt atggtggcta tcagtgcgaa gcggcgtttg
     7741 gcgaggcact gaaactggca cctcacctgc gtgaacggat ggaaatcgtc agtaaatgcg
     7801 gtatcgcgac gaccgcgcgt gaagaaaacg tcattggtca ttacatcact gaccgcgatc
     7861 acatcattaa gagcgccgaa cagtcgctaa ttaatctcgc gaccgatcat ctggatctgc
     7921 tgttaatcca ccgaccagac ccgttaatgg atgccgatga agtggcggac gcgttcaaac
     7981 atctgcatca gagcggcaaa gtgcgtcatt ttggcgtatc gaactttacg cctgcgcaat
     8041 ttgccctgtt gcaatcacgt ctgccgttta cccttgccac taatcaggtg gaaatatccc
     8101 cggtgcatca gccgttactg ctggatggca cgctcgacca actacaacaa ctgcgtgttc
     8161 gtccgatggc gtggtcctgc cttggtggtg gtcgtctgtt taatgatgat tatttccagc
     8221 tgctgcgtga tgaactggct gtggtggcag aggagttaaa cgcgggctcg attgaacagg
     8281 tggtttacgc ctgggtatta cgtttaccat cgcagccgct gccaattatc ggttcaggta
     8341 aaattgagcg cgtacgggca gctgtcgaag cagaaacact gaaaatgacc cgtcaacaat
     8401 ggtttcgtat tcgtaaagcg gcactggggt acgacgtacc gtaagcactt ttaggaatag
     8461 ccgccgttca aaaatgtgtc actggtttac acttattcag gaatgcacaa tgaacggagg
     8521 tcctatgaaa cgttttagtc tggctattct ggcgctggtt gttgcaaccg gcgcacaagc
     8581 tgccagtgaa aaagtcgaga tgaacctcgt cacgtcgcaa ggggtagggc agtcaattgg
     8641 tagcgtcacc attactgaaa ccgataaagg tctggagttt tcgcccgatc tgaaagcatt
     8701 accccccggt gaacatggct tccatattca tgccaaagga agctgccagc cagccaccaa
     8761 agatggcaaa gccagcgccg cggaatccgc aggcgggcat cttgatccac aaaataccgg
     8821 taaacatgaa gggccagaag gtgccgggca tttaggcgat ctgcctgcac tggtcgtcaa
     8881 taatgacggc aaagctaccg atgccgtcat cacgcctcgt ctgaaatcac tggatgaaat
     8941 caaagacaaa gcgctgatgg tccacgttgg cggcgataat atgtccgatc aacctaaacc
     9001 gctgggcggt ggcggtgaac gctatgcctg tggtgtaatt aagtaattaa gaggcctgcg
     9061 taccttgcgg tggtgcttgc tcaagttgcg aaagcgagca gtacagccgc cagacaattg
     9121 ccgccagctc acgggcggca ggttgatgat gacgggcaag gctgtcgcaa atccgctgta
     9181 attcttcaag tgtggccgcc agtgattttt gctgaacgcc acgctcactc atcactcccc
     9241 gcaacagtga aatacagtta tcccgtactc gcgataacgg atcggaacgc gattcccagt
     9301 cgcgcaattg ccagacaaca tgagaacagt tcagcagcac tacactccag cgtaataacc
     9361 aacggcgagc cagcgcatcc tggctgttac tcaactgact gacgtgatga taagtgagcg
     9421 attcaaattc gctttcactc agtgttggat ggcggcttag ctgatcgaca aaatcccggc
     9481 gcagcgcgcg aatatggcgg cggcttttac gagcatccga tcctggacgc agaatggcga
     9541 acgctagcca agccagcgca acgccaacga tttttgccag attatcgtta agaaagtcag
     9601 caaaatcata caccggggga ttagtgacag cgataaacga acccataaaa acaatcagtt
     9661 gcccccacag tgcggcaaat ttgggcatct gcaatttaag aagctgcatt gtcgccagca
     9721 gtggaaagag aaacagtaaa aattgccaca gatcgctaat ctggaccatc aggccaaatt
     9781 tgaccacaaa gctgaatagc gaaagtaaca ccagcgtgcg catcagcagt gacaacgact
     9841 taaacggtgc tgcgacggcg gagtagagta cgcagctaat tgctgccagc gttaatgcat
     9901 tggcaccggc atcctattgc gatgcaatac tccatgcgcc aatcatcatc aacgtacaaa
     9961 atgtacgcag cccgctccac ataacttcgg cgttgtcggt atgacgagcc agagcggatg
    10021 tccgtgcgag tctggcatga tcatctacac cgctttgcag acgatgtaat tcctgactac
    10081 tttgcagata aaggcggcaa aaataacgta gtcgctgcca gaaggcgacg tgccggtagt
    10141 cggcgacgtt ggtcgggcgt agcggggcga taatacgtgc gacggtgtaa gcatctgttt
    10201 gcgaactggc gagcgccgtc agcaattgtt cgagaatttc tcgcgtggca cctggcggtg
    10261 agggccagtt gagcaacata cgtcgcaggc tggagatgac actggtcata cgtaattgct
    10321 ggtggagtag cgcattaagg cgcgcgtttt gctggcgaaa acgatagtgg ctccagaaag
    10381 cctggatacg cagcaaattc atggtcagta tctgcccaat ccccccctca tgtgctgcac
    10441 gaatggcatc gtttgtttca ggctgccaga gtaaactggc atgttccagt aatcgggcgt
    10501 gcatgttttt caatgcggtt aaaagggctg tagcatcgga actgctaggc aggatcatca
    10561 tcatcatgcc gccgcacaaa ataccgacta tcacctcgca aacgcgcgcc tgagcgatat
    10621 cctacagctg gctggcctca gtaatattaa ccatcggaaa ggcgatgatg gcagccgtgt
    10681 agccgccagt tgaaatgcat acgcgacgtt attcgtgaag tgcgcacagg cccaggtaca
    10741 aaagccaagc cacgccgaca tgctcaatag aaaaaaccac ggctcattga gcgtatgccc
    10801 ggcaagaagc agtgccgcaa tggctcccag taaactgcca gcgatgcgtc cgaggctttt
    10861 gctgatgaca ccgccaacgg tgggaaagct aaccactgca gccgaggtca tcgcccaata
    10921 gggttcatcc agattcaaat aataggcaac cgtcagcgcc agacacatgg caatggtatt
    10981 gcgtaacgca taacgccatt gcgccagcgt ggccttgaac cagggcaaat tgcgcaagga
    11041 ccatgacgat gcgttcatta ttgacctacg gcaatgctac aggtggtgcc cgacaccagc
    11101 gtgacatcgc ctggaacttt atccagcgca aagcggacgg gaacgcgttg ggcgagacga
    11161 acccagggga cgttaggttt cacatccgga ataaggcttg agtcactttc aacgctttga
    11221 tcataaatcg cccgaccgat actggaaacg tgaccccgta acgttttgtt atcactatag
    11281 agggtaattt gtgctggtgc accttcgcgg atatggcgca acttggtttc ttcaaaataa
    11341 ccaatgacgt aaaacgagtg gctgtcgaca agggcaaaca gcggtttccc ggtgtcagcg
    11401 taatcgccga tgcgggtagt gaggttagtc acccaaccac tcaccggggc gcgaatttcc
    11461 gtttgcgcca gttgccattg tgtctgtttc agcgtggcct gtgcggcatt aacactggcc
    11521 tgcatcgctt taacattgag gttagcggta tcgagttctt cggcagaaat aaaattttgt
    11581 gagagatgac gacgacgatt cgcttcgtta ttggcttttg cgaggtcaga ttgcgctttc
    11641 gccagctgag cctgtgcgtt cagctcggcg atctgaaagg gcgttttatc gatcgtgagc
    11701 agaagatccc ccgcgttaac cagttggttg tcttttatat tcagctcaac aatacgtccc
    11761 gacacctgtg gggtgataga aaccttttct gcgcgtattt tcccgtcgcg tgtccacgga
    11821 gattgcatgt aataattcca cagccaccat ccggcaagaa ccgcaactat cgctacaatg
    11881 attattgaga aatacttaat tgttttaatt gacatagtta ccacgcaatc agtattgcca
    11941 gagcaaggca aacgcaaatc gcaaacagcg ataaatccat ttacaaggga tgccagatgt
    12001 caccggcgta gatccagcca cgaagcaggc ggtgtacgac aagccagatg acgaatccaa
    12061 acgcgaaggc tttgaaaaac ggaggaaaat agacggacgc accgaacacc agatcttgta
    12121 agggcaatcc tgttgcattg agcataaact tcacaaagta gattccttta cgaccgaata
    12181 tattgcgtta gattaataaa tattctttaa gtgcgaaaaa tttacgcgca atttctgaaa
    12241 aatatgtctg acggtaacca aatgcagcaa tacatttgtt ttagcaataa aattgctgca
    12301 cactattcta aaagccgcat aatatcttag caagctaatt ataaggagat gaaattggaa
    12361 tcgccactag gttctgatct ggcacggttg gtgcgcatat ggcgtgctct gatagaccat
    12421 cgcctgaaac cgctggagtt aacacaaacc cattgggtta cgttacacaa tatccatcag
    12481 ttacctccag accagtcgca aattcaactg gcaaaagcga ttggcatcga gcagccatca
    12541 ctggtccgta ctctggacca actggaagaa aaagggttaa tttcgcgtca aacttgtgcc
    12601 agcgatcgtc gggctaaacg tattaaactg acggaaaagg cagagccact gatcagcgaa
    12661 atggaagctg ttattaacaa aacccgcgcg gaaatattac atggcatctc cgcagaggaa
    12721 ctggagcaac tgattacgct catcgcaaaa cttgagcata atatcattga gttacaggcc
    12781 aaagggtgaa atgaaggggg cgtgtggtca gtaacctgac cacacgcaaa cttatttagc
    12841 gcggagaaac ggtcacctga ctgccattgc tggccagtac gacacgttgg cccggagaga
    12901 aacgagtgtt gccttgtttc tgtaccacca tgatggtatt accatcgtct ttacgaattt
    12961 ccagctcgac accctgcgtt ttgttcattg cactctgtac gccctgacca gctacgccac
    13021 ctgcaacagc gcctgctgca gtagccagag aacgcccggt tccgccacca acagtattcc
    13081 ccaggaaacc accaagaaca gcaccgccaa ttgcaccgat aacgttggaa tcatcaccgc
    13141 cctgaatctg taccggacgt acgttaacga tggtgccata gctgacattc tgtacttgtt
    13201 tcgcttcaga agcggtataa acatcccctg acagggtgtc gttattaaca caaccgacaa
    13261 gagacagacc taccattgaa acaaccaata cgcgtttaat cattgaaaaa tctcctgttc
    13321 accatgaaac gccacgcaag catccctcat ggtcaaagta tatggcatat gtgaatccat
    13381 ggttacatgt tctaccaaat atgagcaaat cataatgaaa gtaggatcaa ccaattataa
    13441 acaaaacatt catgatgatt attgatttga agataatgtt ttactaccaa cggtaaaaat
    13501 cggtcattcc gcatggtatt cacgaaaagt ttatgtttga gtggtgcgca aacgtcagat
    13561 tgaaaaagga tgaactatga aatcgggccg ctttattggc gttatgtcag gcaccagcct
    13621 tgatggtgtt gatgttgtgt tggcgacaat agatgaacac cgggtcgcac agctggcaag
    13681 cttgagctgg ccgatcccgg tgtctctgaa acaggctgta ctggatattt gccagggcca
    13741 gcagcttaca ctttcgcagt ttggacagct tgatactcaa ctcgggcgac tttttgctga
    13801 tgcggtcaat gccttgctta aggaacaaaa cctgcaggcg agagatatag ttgcgatcgg
    13861 ctgtcacggt caaaccgtct ggcatgaacc gacgggcgtg gcaccacaca ctttacagat
    13921 tggcgataac aatcaaattg tggcacgcac cggaattacg gttgtcggtg attttcgccg
    13981 tcgcgatatt gccttgggag gacaaggcgc accgctggta cctgcgttcc atcatgcctt
    14041 gctggctcac ccaaccgagc gacgaatggt gctcaatatt ggcggcatcg ccaatctgtc
    14101 actgctcatt cctgggcagc cggttggcgg ctacgatacc ggtcctggta acatgctgat
    14161 ggatgcctgg atctggcgtc aggccggtaa accttacgat aaagatgccg agtgggcacg
    14221 ggcgggtaaa gttattctcc cactgctgca aaatatgctc agcgacccat atttctcgca
    14281 acctgcaccg aaaagcaccg gacgcgaata ctttaactac ggctggctgg agcgccattt
    14341 acgccatttt ccgggtgttg atccccgtga tgttcaggcc acactggcag aactcaccgc
    14401 cgtgaccatt tctgaacaag ttttgttgag cggtggctgc gaacgattga tggtatgtgg
    14461 tggaggtagt cgtaatccgc tactcatggc gcgtctggcg gcattactgc caggcacaga
    14521 agtcaccacc accgatgccg ttggcattag tggcgatgac atggaagcat tggctttcgc
    14581 ctggcttgcc tggcggacgc tggcgggatt accaggaaat ctgccttccg tcactggcgc
    14641 aagccaggag acggtactgg gggctatttt ccctgctaac ccgtgatatc agagttaact
    14701 gaatttttct taccgcgtct gccgttacac ttggaacgtt agggagggcg tattgccctc
    14761 cagaccagga aagtcttcgg gaaatgtcta tgaaaaaact gttactgatc tgtttgccgg
    14821 tgcttctcac cggctgtagc gcgttcaatc aactggttga gcacatgcaa accgctacgc
    14881 tggaatacca gtgtgatgaa aaaccgttga cggtcaaact gaataatccg cgccaggaag
    14941 tcagttttgt ttacgataat caactactgc atctcaaaca gggcatttca gcgtctggtg
    15001 cacgttacac tgacggaatc tatgttttct ggtcgaaagg cgatgaagcg actgtctata
    15061 aacgcgaccg catcgtattg aataactgtc agttacaaaa tccacagcgt tgagattttt
    15121 ccaggggcgg cgcacaatag cgtcacccac tgacaatccg taaagaaaac catgtctgat
    15181 aacgacgaat tgcagcaaat cgcgcatctg cgccgtgaat acaccaaagg cgggttacgc
    15241 cgtcgcgatc ttcccgccga tccattaacc ctttttgaac gttggctctc tcaggcgtgt
    15301 gaagccaaac tggcagaccc taccgcgatg gtggtcgcta ccgtggatga acatgctcag
    15361 ccttatcaac gcatcgtttt actcaaacat tacgacgaaa aaggcatggt gttttacacc
    15421 aacctcggta gccgtaaagc acatcaaatt gaaaataatc cgcgcgttag cctgctgttc
    15481 ccgtggcata cccttgaacg ccaggtgatg gtgatcggta aagcagaacg actttcgact
    15541 ctcgaagtga tgaaatattt tcatagccgc ccgcgtgata gccagattgg tgcatgggtt
    15601 tcgaagcagt ccagtcgcat ttctgcccgc ggtatccttg aaagtaaatt cctggagctg
    15661 aagcagaagt ttcaacaggg cgaagtgcca ttgccgagct tttggggcgg ttttcgcgtc
    15721 agccttgaac agattgagtt ctggcagggt ggtgagcatc gcctgcatga ccgctttttg
    15781 taccagcgag aaaatgatgc gtggaagatt gatcgtcttg caccctgaaa agatgcaaaa
    15841 atcttgcttt aatcgctggt actcctgatt ctggcacttt attctatgtc tctttcgcat
    15901 ctggcgaaaa gtcgtgtacc ggcaaaggtg cagtcgttat atacatggag attttgatgg
    15961 caagcagtaa cttgattaaa caattgcaag agcgggggct ggtagcccag gtgacggacg
    16021 aggaagcgtt agcagagcga ctggcgcaag gcccgatcgc gctctattgc ggcttcgatc
    16081 ctaccgctga cagcttgcat ttggggcatc ttgttccatt gttatgcctg aaacgcttcc
    16141 aacaggcggg ccacaagccg gttgcgctgg taggcggcgc gacgggtctg attggcgacc
    16201 cgagcttcaa agctgccgag cgtaagctga acaccgaaga aactgttcag gagtgggtgg
    16261 acaaaatccg taagcaggtt gccccgttcc tcgatttcga ctgtggagaa aactctgcta
    16321 tcgcggcgaa caactatgac tggttcggca atatgaatgt gctgaccttc ctgcgcgata
    16381 ttggcaaaca cttctccgtt aaccagatga tcaacaaaga agcggttaag cagcgtctca
    16441 accgtgaaga tcaggggatt tcgttcactg agttttccta caacctgttg cagggttatg
    16501 acttcgcctg tctgaacaaa cagtacggtg tggtgctgca aattggtggt tctgaccagt
    16561 ggggtaacat cacttctggt atcgacctga cccgtcgtct gcatcagaat caggtgtttg
    16621 gcctgaccgt tccgctgatc actaaagcag atggcaccaa atttggtaaa actgaaggcg
    16681 gcgcagtctg gttggatccg aagaaaacca gcccgtacaa attctaccag ttctggatca
    16741 acactgcgga tgccgacgtt taccgcttcc tgaagttctt cacctttatg agcattgaag
    16801 agatcaacgc cctggaagaa gaagataaaa acagcggtaa agcaccgcgc gcccagtatg
    16861 tactggcgga gcaggtgact cgtctggttc acggtgaaga aggtttacag gcggcaaaac
    16921 gtattaccga atgcctgttc agcggttctt tgagtgcgct gagtgaagcg gacttcgaac
    16981 agctggcgca ggacggcgta ccgatggttg agatggaaaa gggcgcagac ctgatgcagg
    17041 cgctggtcga ttctgaactg caaccttccc gtggtcaggc gcgtaaaact atcgcctcca
    17101 atgccatcac cattaacggt gaaaaacagt ccgatcctga atacttcttt aaagaagaag
    17161 atcgtctgtt tggtcgtttt accttactgc gtcgcggcaa aaagaattac tgtctgattt
    17221 gctggaaata atgcattaag tggaaagggg gagtgagaaa tcactccccc tggtttttat
    17281 acagggaaca tgatgaaaaa tattctcgct atccagtctc acgttgttta tggtcatgcg
    17341 ggtaacagtg cggcagagtt tcctatgcgc cgcctgggcg cgaacgtctg gccgctgaac
    17401 accgttcaat tttctaatca cacccagtac ggcaaatgga ctggctgcgt gatgccgccc
    17461 agccatttaa ccgaaattgt gcaaggcatt gccgccattg ataaattaca cacctgtgat
    17521 gccgtgttaa gtggctatct gggatcggcg gagcagggtg aacatatcct cggtatcgtc
    17581 cgtcaggtga aagccgcgaa tccgcaggcg aaatattttt gcgatccggt aatgggtcat
    17641 ccggaaaaag gctgtatcgt tgcaccgggt gtcgcagagt ttcatgtgcg gcacggtttg
    17701 cctgccagcg atatcattgc gccgaatctg gttgagctgg aaatactctg tgagcatgcg
    17761 gtaaataacg tcgaagaagc ggttctggca gcgcgcgaac tcattgcgca agggccacaa
    17821 attgtgttgg ttaaacactt ggcgcgagct ggctacagcc gtgaccgttt tgaaatgctg
    17881 ctggtcaccg ccgatgaagc ctggcatatc agccgtccgc tggtggattt tggtatgcgc
    17941 cagccggtag gtgttggtga tgtgacgagc ggtttactgc tggtgaaact gcttcagggg
    18001 gcaacgctgc aggaggcgct ggaacatgtg accgctgcag tctacgaaat catggtgacc
    18061 accaaagcaa tgcaggaata tgagctgcaa gtggtggctg ctcaggatcg tattgccaaa
    18121 ccagaacatt acttcagcgc aacaaagctc tgaaatatct catttcggcc cacaacgacc
    18181 tgtgggccga tggctattac tttaagcctt ccgctgacag tgcgtcttgt acttccggac
    18241 gttcagccat acgttgcata aatgctgcaa tgtgctctaa cccttccaga ttcagtttca
    18301 ccgcgtatgc ccagcgcaga accgtaaaca gataggcatc agcaattgta aatctttgcc
    18361 cgcagatcca gtgctcatcc ttcagtgtct cgttcacata ttgcagcttc ttctccagct
    18421 gcgcgcgaac tgtcggtttg tactcttccg gtgtatcagg gcgaaacaga ggtgtgaaac
    18481 ctttatgcag ctcggtggcg atgtaattca gccattcgat ggttttatag cgggaaatac
    18541 tgtttaccgg tgccagcaac tggcggtcgg ggacgctgtc ggcaagatac tgcataatcg
    18601 ctacgccttc cgtcagcaaa gtaccgtcat ccagcagcaa tgcaggcacc tgccccttag
    18661 ggttaacggc aaagtaatcg tcaccgtttt cgagacgttt tttcattaaa tccacactga
    18721 cgagggtaaa atcctttccg ctctcacgca gggtgatatg ggaagcgaga gagcaggcac
    18781 ccggtttgta gaacaatttc atcggtaact ccttttgtct gtggtttaaa gtatggtagt
    18841 gcgttgctga acaaaaaaaa agccgctaac gaaaagttag cggcttgtaa aagagtttcc
    18901 ctaaatttta cgctacagca gctttcgccg ctttgtctgc agcgtcatcc tgcgtcatac
    18961 ggtgcagttt aggcgcggtc agcagcatca gtactgcaat aatggcagta gcgacaccaa
    19021 tctgcaagaa tacgcgacca taaacttcca gtgacatcag cgggtcggta acgttatccg
    19081 gcacagccat catacccgca acataaccac caatcaggtt tgcaccggca gtggtcagga
    19141 accagctacc cataatgaag cccatcagac gctgcggaac gagttgtgca accattgcca
    19201 gacccagacc agagatcatc agttccccga tgctctgcag gccatagctt gcgaccagcc
    19261 agcttacaga cacgatacca gcgtcagacg cgaatttcgc acccagcggc agaatcagga
    19321 acgcaccaga acacatcacc atgccgattg caaacttggt tggcatcggc agggtatcgc
    19381 ccatcttgtt atagatagcg gccagaatcg gactaccgat gatgatccag aacgggttca
    19441 gtgcctgata ctgctcaggt tctacggcca gacccagaat ggagtgctca acgttacgaa
    19501 tcgcaaagaa gttcagtgac gttggcatct ggctgtacag cacgaagaag ataatggctt
    19561 cgagcatcag gatgaaggca acgatcattt tacgacgcgc agcacctttc atcgcgaagg
    19621 cttctttacc gaagataacc acgataccga aggcaacaac gcccagcgcc atacgcgcaa
    19681 cttcctgatt gtgcagcagc caggtggcga tagcgatcag tgccacaaca ccaataatgg
    19741 tcagtagcag gttacggtag ttgataggct cgaagtctgg ttttgaaccg tactgtttaa
    19801 cccagcgttg gcagaaggcg aagttaacga tagtgatcag caggcctaca acgctcaacg
    19861 caaacgcaac actccagccg tatttcgcgg ccagccacgg cgtagcaatc atagagaaga
    19921 aagagccgat gttgacggac atgtagtaca tggtgaatgc accgtccaga cgcgggtcgt
    19981 ttttctcata gcatgtagaa agcagagaag acgggttagc tttaaacagg ccgttaccga
    20041 ccgcaatagc cgccataccc atataaacga taccggcgtc gtgaccagac caggcaacca
    20101 gagcataacc aatcgccagc acaatagcgc cgagcataat tacgcgttta gtacccagta
    20161 ccttgtcacc taaccagccg ccgatagcga ccagaccata aaccagggca ctaaaggaag
    20221 agaaaagggt gattgaatcc gcttcagaca tacccagttg tttaaccagg taaacagcca
    20281 taattccttg taggccgtaa taaccaaaac gttcccataa ctcaatcgag aagatgagat
    20341 agaacgcctt cggttgtttg aaagcgttca aactgacgct ttcagttggt ttttggtttg
    20401 cagtggacac ttttacctct ttttttacat cccatattaa cgggggtgct ttctcgcgtt
    20461 atgtctaaaa aacatacgcg caattgttat agtgggaggg gaaacggcag gtaatgttca
    20521 ctatcttgca ctttcagaca agtcctttgt aataatctgt tacatataac tgaggcgggg
    20581 aattcaacca ttccgggaaa tgttatccag cgttaaattt ttcaaaaaac gtaacggcag
    20641 attttttcac tgcactgaga gggggatgat ggcttaacgg cgatatgttc tgctatttag
    20701 cgtttttact agtgagatag tccagtttct gaaaaatagc cagtgtaatg ttttgtaggt
    20761 caatatttgt tgcgtgtgta aatttaaatg attttaacct gattcttgca atgtttttac
    20821 attgcgacag catcgtgatc ttgatcacga atgaatagaa aatttcgcta ttaaaaaaac
    20881 aattaacctg catttttggt tatccgcaaa cggattacct gatgataacg ctaagcaatg
    20941 gcatcattca cgttaaaaag atgttttaaa agaggataaa gaaaggttat caatggggta
    21001 atcggtgtta ccccttttct tcagatgtca actttctctt tgtattcaca aagatcttca
    21061 ataatacaag agccacagcg gggcttgcgg gcaatgcagg tataacgccc gtgcaggatc
    21121 aaccaatggt ggcagtcgac tttaaactct gccggaacca ctttcagtag cttttcttct
    21181 acctgttcaa cgtttttccc cggcgcaaat tgagtacgat tacaaacgcg gaaaatgtgc
    21241 gtgtcgacag caatagtcgg ccagccgaat gcagtgttta atacgacgtt ggctgtttta
    21301 cgacctacgc cgggcagggc ttcaagcgca gcacgatctt ccggaacctc gccattatgc
    21361 tgctccagta agatacggca ggttttgatg atattttctg ctttgctgtt ataaagccca
    21421 atcgttttga tataggtttt aaccccttca acgcccagtt caagcatcgc tgcaggcgta
    21481 ttcgccaccg ggtagagttt cgccgtcgcc ttattaacac tgacatcggt cgcctgagcg
    21541 gaaagcagta cggcaatcag caattcaaaa ggcgaactga aattaagctc ggtggtggga
    21601 tgaggattgt tctcacgcag gcgagtgagg atctccaggc gttttgcttt gttcatcaga
    21661 cattccctgt ttcaccgttt ggcaatgcac gttcggcagc tgcttcagta cggcgctttt
    21721 tcattctttc atcaatcagg tattttcctg ccagcatcag tcccaggcca ataaatgcac
    21781 ctggtggcag catcgccagc aggaaagggg agtcggtgtg gaaaatctcc acgcgtaata
    21841 cttttgccca gctacctaac agcgcatctg caccgtcaaa caatgtgcca ttgccgataa
    21901 tttcgcgtag tgaacccagc acgaacatgg cgcaggttgc gcccatacca attgaaaagc
    21961 cgtccagtgc cgaaagcgcc ggaccttttt tggcggcgaa ggcttcagcg cggcccacaa
    22021 cgatacagtt agtgacaatc agcggaataa aaatccctaa tgattgatac aggccaaagg
    22081 cgtaggcgtt gatcagcatc tgtacagcgc tgaccaccga ggcgatgatc atcacgtaaa
    22141 tgggaatgcg gatctcggct ggcgtccagt gacgcagcgt cgaaatggtc aggttggtca
    22201 gcgtcagtac cagcgtagtc gcaagtccta aacccagagc attagtggca gtggacgtga
    22261 ccgccaacag aggacaaagg ccgagcaact ggaccagcgc agagttgttt ttccacaacc
    22321 cctgaacaat aacgtcttta atttcgctca cgctttattc tccacaggca ggaagttgag
    22381 aaagttgtgc cggtaacgtc tgagcgtaca atccggcgcg ttttaccgca ttaaccaccg
    22441 cgcggggagt aatcgtcgcg ccggtgaact ggtcgaaatc accaccatct ttcttcaccg
    22501 cccagtgcgc atcatccgca ccactgattt ttttacccgc aaaatgggtg atccagtcag
    22561 aaaggcgcag ttcgatttta tcgccaagcc ctggcgtttc gtggtgctct gtcacgcgcg
    22621 tgccaagtac cgtgccgtta aaatcggctc ccaccagcag ctgaatcgca ccggaatagc
    22681 catctggcgc ggttgcttcc agaacggcgg ctaccggttt gtcatcctgt ttggcgatgt
    22741 aaacccgatg ctcaccttta cctaactctg gcgcagttac cagatagcaa ctctgtgcca
    22801 gcgcattgtt atagcgttcg gctggcagca cctgatcaaa taatgccttt tgttgcagac
    22861 ttgcctgttc agcaatcgtc gttttggtca tctggttgat ggccgcagtt aaccctgttg
    22921 aacccgctgc aaatagcgct aacgtaatgc cgtgttttcg gatagttttc agcatggttt
    22981 accctttgcg atggccgtag acgcgcggac gcgtgtagta atcgatcaga ggaaccgtga
    23041 tgttcgccag caggacggca aaagccacgc cgtcaggata gccgccgaaa ctgcggatca
    23101 accagactaa taagcccgca agcgcgccga aaataagacg accacgattg gtcgtagaag
    23161 cggtaaccgg gtcagtcaaa ataaagaatg cgccgagcat ggtcgcacca gacagcagat
    23221 gaatttgcgg tgctgccagt gtttctggtg agaacaacca gcccaacgtt gcgcataacg
    23281 ccagcgttac taagaagctg aggggaatat gccagcgaat cgctttctgc catagcaacc
    23341 acaggccgcc agccagccag gcgagattta cccattgcca accagcgccc gccagaatac
    23401 cgctgtagat cggatattgc ataatctgtt caaccgaatg accggcacgg acagaggttt
    23461 taaatgtatc cagcggtgtc gcctgactaa tgccatcaat acctaagtgt agtgtgttca
    23521 tatcagcacc actggcggta tgcccgctga aaataacctg tatggcgtcg ataaaaccag
    23581 ggatgttgac cgcaatttca tgtggcggta accagctggt catctgcacc gggaaggaga
    23641 tcagtaagac cacataacca atcattgccg gattaaacgg gttttgcccc agaccgccat
    23701 acaactgttt agcgatgatc accgcaaaca ccgtacccag cacgaccatc caccatggcg
    23761 cgaggggggg aatacttacc gccagcaata agcctgtcag caatgctgag ttatctttca
    23821 acgttgcggc taccgactgc ttgcgtagtt tgagtacgag agcttcggct aacagagtac
    23881 taaccgatgc caacaggatc tgaacgagag taccccaacc aaaaaaccac agttgcgctg
    23941 cgattcctgg cacggctgcg agcaacacca acagcataat gcgcgatgtc tggcgctggt
    24001 tatgggtata aggggagcta gctattctga ataccattta gtcctcgttt acaacctttt
    24061 gctgggcggc ttttttggcc tgagcgcggg caatagccgc ggcaactgcc gctttgcgcg
    24121 gatcaacctg ttcttctggt tctgcgttag tctgttgctg ttccagcttg cgcgctttgg
    24181 cacgggcaat agcggcttcg acggcggctt tgcgcggatc aacctgttct tcaggtaccg
    24241 cattagcctg ttgctgttcc agcttgcgtg ctttggcgcg tgcaatagcc gcttcgacgg
    24301 cagctttgcg cggatcaacc tgttcttctg gctccgcatt agcctgttgc tgttccagtt
    24361 tgcgcgcttt ggctcgggca atagcggctt cgatggcggc tttgcgcgga tcaacctgtt
    24421 cttctggttc cgcattagcc tgttgctgtt ccagcttgcg cgctttggca cgggcaatag
    24481 cggcttcgac ggcggctttg cgcggatcga cctgttcttc tggttccgca ttagcctgtt
    24541 gctgttccag cttgcgcgct ttggcgcggg cgatagctgc ttcaacggca gttttacgtg
    24601 gatcagcaac ggttgctgcg tcgttagttt gctgcagttc tgcctgtttc gctctggctt
    24661 gcgctttacg ggcttcccgt gctgcaataa ttgcactgtt atccgggcgt tcgcccgctt
    24721 taatcacaat aggctgtgta gcctgggcct gtttctcttt cacccgcgcc agagcggcag
    24781 caatcgcatc tttatctttg gctgcaggtt gaacggctgc gctcttatgt cgttcaaggc
    24841 gagccgcttt ttcgcgctcc agacgagcct ggcgcgcttc gaaacgcgct ttggcttctg
    24901 cggcgcgctt ttcttcctga cgaatagccg caatttcagc tttttcctga cggaaatatt
    24961 gcaccagggg aatattgctc gggcaaaccc acgcgcaagc cccacattca atgcaatcag
    25021 caatgttatg cgtggtagct ttatcgtgtt gctgaccttt gctgaaccag tacaactgtt
    25081 gcggcaaaag atccgcaggg caggcgtcag cacaggcgct acaccggatg cagctttgtt
    25141 cttcctgtgg ttcgccaagt tcattggcag agggagccaa cagacagttg gtaatcttta
    25201 cgaccgggac atccagccat ggcaaggtaa agcccattag cgggccaccc ataatcacca
    25261 tttgatcggc agaggggcag aatcgggcat cattcaataa atgacgcact ggcgtcccca
    25321 gccgtgccca gacgttgccc gggcgagcga ttgcttcgcc agtcagggtt acaacacgct
    25381 cggtaatcgg ctcgccatca ataacggcac gtttcactgc ataagcagtg ccgacgtttt
    25441 gcattaatac gccgatatcg gatgaacgcc cgccatgtgg aacctgcttc ccggtcagaa
    25501 tgtaggttaa ttgtttagca ccgccagaag gatatttggt tggaatcacc cgcagagaaa
    25561 tatcgttaga gtccgccagc accgcgcgca gcatggaaat cgcctgcggt ttgttatctt
    25621 caatgccgat aagaatttcg cgtggctgca gaatatgcgc aagaatgcga ataccctcta
    25681 cgacctgagc cgcgcaatcc tgcatcaaac ggtcatcggc ggtaatgtac ggctcgcact
    25741 cagccgcgtt gataatcaac gtttcaatct tatctccgcc accctgcaat ttaacgcctg
    25801 tcgggaatcc tgcaccgccc agcccggcaa caccaaactg atgtatgcgc tcgattaact
    25861 cttcgcgact acgagtgcga taatcggccc agccgtcgcg cgggatccag cagtcttcac
    25921 catcggcatc aataatcacg cttaattcag ctaaagctga aggatgagcc gtagagtggg
    25981 gcgcaatagc cgtaacggta cccgaggtgg gcgcgtgaac aggcagcatt ttgccgcgac
    26041 cacgggtaag cggctggccg cgcaatactt tatcgccgac gctaacgcac aactcacctt
    26101 cagcgccaat atgctgtttc agtggaataa caaaacgctg cgccagtggt acctggcgca
    26161 ggggggtacc gttggactgg gttttcatct ccggtggatg gatgccgccg ttgaaatccc
    26221 agattttatt ttttctgaat gcagagaata acttaagcat ggtgttccac gggaatgata
    26281 cgcacgggaa tggtgttcag atcccatttc caggagtcag gtgtttctgc gaccggttgc
    26341 aacgagatgc agtgcgtcgg gcacggatca acacataaat tgcagcccgt acagagatca
    26401 ctcattaccg tatgcatggc acgggtagcg ccaacgatgg cgtctaccgg acaagcctga
    26461 atacatttag tgcagccaat acagttattt tcatcaataa ccgccaccat ccgcgcaggc
    26521 gttagctctt gcgcttcgcc atccagcggc tgcggctcga cattaagcaa ctcggcaatt
    26581 tttagcatca cagcttcgcc acctggggcg caacggttga ttttttcacc gttacagctg
    26641 atggcttccg cgtaggggcg acagccggga taaccgcact gaccacactg gctctgcggt
    26701 aagatttcgt caattttctc aacgaccgga tcgtcttcca ccgcaaaacg gcgggcggca
    26761 taacccagaa tggcgccaaa cgccaggccc agcaggctca cggcggcaac ggcaatccag
    26821 atagcattca ttacaacttc accaaaccac taaagcccat aaaggccaga gacataagac
    26881 ctgcggtaat taacgcaatg gcattaccgc gaaaaggtgc cgggacatca gccacagcaa
    26941 ggcgttcgcg gatggcggtg aagagcacca tcaccagcga gaaaccgaca gcggcggaaa
    27001 aaccgtacag cgccgactgc aagaaattgt gcccgagatt gatattcagc aacgccacgc
    27061 cgagcactgc acagttggtg gtgataagcg gcaaaaaaat ccccagcaga cggtaaagca
    27121 ccgggctggt tttgcgcacc accatctcgg tgaactgcac gaccacagca atcaccagaa
    27181 taaatgccag ggtgcgcagg taaatcagat taagtgggat caaaatccac gtatcgataa
    27241 gccaggcgca aatagacgcc agcgtcatca caaacgttgt tgccagcccc atgcccatcg
    27301 cggtttccag ttttttggaa acccccataa acggacagag accgagaaac ttgaccagca
    27361 caaagttatt gaccagtata gttccgacaa acagtaacag gtagtcagtc atttttcggc
    27421 ctgaaataaa aaagccgcct attatccgtt aatccagagc aggcgacaac aggttaactg
    27481 taaggttatt acggattcac aaacgtcgct tttacccgcg acgagcgttt gaaataggag
    27541 acgatcaatg cggttgccaa caaagtaaac agcaactggc gaacggctat gccatcttcc
    27601 acgggtgaaa aagcgaatgc ttttactgcc agcaatacgg aaataagcag ccagataata
    27661 tagtgtttag gaacacaacg ccgacgttta aagaaagcga tggtcaacca cagtgtgtaa
    27721 taccacatgg cgatagcggt aataaaagaa acgccccata agatttgtgt cgtcagtgct
    27781 tgtccgccga gcgtttgaaa tgtttgcgga gaagataacg cagcggtata cagcaacaac
    27841 gccagcgtcg tactcaatag agcgactaaa agccaggcca acgggccaag caaccagcct
    27901 ccaatacgtt gtggcgttgt ggtggtcata ggttctccag aatagcgacg caaacaggca
    27961 aatctaattt taggggcgtt attataaggc ttttataacc gatcgctact ttctttattg
    28021 gacatagtgc cagacggact tcggtacctg gccgaggtca aacaaacgcc cgccagaaac
    28081 cagctctgcg cgacggtgat cggcagcacg atacatattg atcagttcct gatcgtccgt
    28141 cagggtgtaa ttaagatggt cgtagagttt ttccagactt tcgagtgaac tgattttgcg
    28201 aaattttaat aagtagtcct gaacagtcat aaaaggtcca taaaataatt aataccaaag
    28261 gggtaggtat tattagtgat gataaaattt caccaaaagt gaacgcttgt gttattacaa
    28321 taataagaat gcgctgatgg caaatattca gggatgaaaa actgctctga aaagagcaac
    28381 gcgctttact atccctgaca atcaccaaca acatcgaaca agataataaa ttcctggttt
    28441 aatatccgac aagtgaaaac atgcaaccgg acgggcagca tggcgctcta caagcgcaga
    28501 gcttacttgt gttgtaccga agcactctgt tcaggtggct gatagttgtc aatgtgactc
    28561 gccacgccaa gaagaatgac tgaaacgaca agaacgatcc aacctgttaa ttcaataaga
    28621 cgattcatta cagcccacat ctctcttgat tgatccatta acttcagggg gtaaatgtta
    28681 cttagcaata atagctccag caagattttt actgaggttt ttgcgatatt tagcttttgt
    28741 cgttggaaaa ttcgctattt ttttgactta atattaaact gttgagcgtg ggtaaaggat
    28801 agtgtcaaat agcaatcata cttcaatgag aggcaatgac atgagcgaca acatccgtgt
    28861 tgggttgatt gggtatggtt atgcgagcaa aaccttccat gcgcccctga ttgcgggcac
    28921 gcccgggctg gaactggcgg taatctccag cagtgatgaa acaaaagtaa aagccgactg
    28981 gccaacggtt acggttgtct ctgagccgaa gcatctgttt aacgatccca acatagacct
    29041 gattgtcatt cctacaccca acgataccca tttcccgtta gccaaagcgg cgcttgaggc
    29101 gggtaaacat gtggtcgttg ataaaccctt taccgtgaca ctgtcacaag cgcgagagct
    29161 ggatgcgctg gcaaaaagcc tggggcgtgt gctgtctgta ttccataacc gtcgttggga
    29221 tagcgatttc ttgacgctaa aaggtttgct cgcggaaggc gtgctgggtg aagttgctta
    29281 ctttgagtct cattttgacc gcttccgtcc gcaggtgcgc gatcgttggc gtgaacaggg
    29341 cggcccaggc agcggtatct ggtacgattt agcaccgcat cttcttgatc aggccattac
    29401 gctatttggt ttaccggtca gcatgacggt agatttggca cagttacggc ccggagcgca
    29461 gtcgaccgat tatttccacg ccatcttgtc ctatccacag cggcgagtca ttttacacgg
    29521 taccatgctg gcagccgctg agtcagcacg gtatatcgtg catggatccc gaggcagtta
    29581 tgtgaaatat ggcctcgatc cacaggaaga acgtctgaaa aatggcgagc gtctgccgca
    29641 ggaagactgg ggctacgata tgcgtgatgg cgtacttacc cgagtggaag gtgaggaacg
    29701 tgtcgaagaa acgctgttga cggtacctgg gaattatccg gcttactatg cggctattcg
    29761 tgatgcgtta aatggcgatg gtgaaaatcc ggttccggca agccaggcaa tccaggtaat
    29821 ggagttgatt gagctgggca tcgaatccgc caaacatcgc gcgactttgt gccttgcatg
    29881 aaaaatggat ggtgcaattt gcaccatcca ttttgttact tcgcggcgac tttttctcgc
    29941 agtgcgcgtt tttcctcagc gctgaggaaa gccatttcca gaccattaat ctgtgcttgg
    30001 cggatttgct cgcgggataa cccagcagct ggcgcggcaa cggtatattc gtgaatgata
    30061 tccactccct gtacgccggg atcgtcagtg ttaatgccgg cacgaatgcc atgctcaagg
    30121 aacgttttca gcggatgtgc agccagctct gctacggtgc tggtctgaat attggaggtc
    30181 agacaggatt caataccaat ttgttgctcg gcgagaaaat ccatcagcgc ccgatcttca
    30241 atggctttta cgccatgtcc aatacgctcc gcacccagtt cacgaatcgc ctgccagatg
    30301 ctttccggcc cggcagcttc gcctgcatgg acggtaatat gccagcccgc atcacgcgca
    30361 aggttgaagt gagaaaggaa cagacttccc gggaaaccaa gttcatcacc ggctaaatca
    30421 agggcggtaa tctggtcacg gtgggctaaa aaggcctcca gctcttgctg acaggcggct
    30481 tcgccgaagg ttcggctcat aatgccgata agcttcgcct gcacaccaaa agtgcggcaa
    30541 ccttcacgta cgccatcgat caccgcttcg acaacacccg ctacaggcag cttatgtgcc
    30601 attgccatgt agcctggtga aaaacgcagc tcgacatagt gcaggccgtt acgggctgca
    30661 tcttcaatgt tttcaaatgc cacgcggcgg caggcatcaa gagaggcgag aactttaacg
    30721 ccccagtcaa gtttggtcag aaagctcacc agatcgggtt cgttggcaat gacctgaacg
    30781 tggggaatca gtgtttccag ggattgtgca ggaagcgaga tattatactg gcggccaagt
    30841 tcaagaatgg tctggggacg aatgttgcca tcaaggtggc gatggatatc agttaatggc
    30901 agggtggtat caatcatggt cgcactcttt ttctggatat aaaagtgcgc accattataa
    30961 aaacaaagca gggtaaaaat ccacgattgc gcaacgattt ttacgttgcg caattggggt
    31021 taacgaacag cgcggatggc gttaattaat ccagccacac ctttttccag tttcgaacgt
    31081 gggcagccgg cattgagacg gacaaaacca cgaccttctt caccgtaggt ataccccggc
    31141 atgatcgcga ctttttcttg ttcgataagt gctttttgca acgcgttgtc gtcaatattc
    31201 aacggacgta aatcaagcca tgccagataa gtggattgtg ggatctgcca gttgagttca
    31261 ggaaacgcgg cgttcatttt atctgcgata tacgtcaggt tatctttcag atagatgcgt
    31321 aaggcatcca gccacggcgc gccttgctga taggcggcga tatgggcagt taacgccagt
    31381 accgaagggg aagaaagccc atcacggcct ttcagtgccg ataaataggc atcgcggcta
    31441 ctgctatttt ctataatccc gtaagcaccg gtcagggcgg gaatattgaa acttttcgag
    31501 cccgacgtta gcaacgccca gtctccgcga gccacattac tccagggaat atgcggctgc
    31561 tcgccccaaa ccatatccat atggatttca tcggaaataa cccgcacacc atgacgctcg
    31621 cacaggtcag ccatgatctc cagctcatcg cacgtccaca ctttcccggt aggattctgt
    31681 gggctacaca ggagcataat tttacattct ggtttcgcca acacggcttc caacttgccc
    31741 atattgcaaa accaaccatc agcctgcttc tctaaagcaa cgggcattac tgtgcgctgg
    31801 ttaccttcaa tggccttgta aaatgcgtca taggcgggtg tgtggatcac cacgccttca
    31861 cctgtttcag accactgacg aatcagttct gaaaccatat agatgacaga agggccatac
    31921 accaccgtct gagaatcgat ggcggtgtaa tgctgggtgg aaaaccagtg ggcaatagca
    31981 gcgagaaact catcgttttt ccagcggctg tagccaaata cgccgtgcat caggcgctga
    32041 ttcagcgcct ctataatgca gggggcagtg gcaaaatcca tgtctgaaat cgtgaacggt
    32101 aacaggtcag cagtgccgaa acggtcagcg acataatccc actgtgtaca ccatgtgcca
    32161 tgacgatcca cgacctttga aaaatcgaac atatcttatc cttatgcctg gacagtatgc
    32221 atcagaccgg ccatttcatc ttttactgac tgaacttgtg gcccgataac aacctgcagg
    32281 ttatgttgat taagttgtac tacgccaatt gcccgattgt ccttcagtgc ctgcacatta
    32341 acaagcgaca tatctttcac agacaaacgc agacgggtaa tgcagttatc gaggctgaca
    32401 atattgtcgg caccgcctaa tgcttcgagg attgcaggaa cgttgtaacc tgatttaccc
    32461 ggcgcagcgg caacggcttt ttcgattgag ctggcaactt cgctatcgcg ccccggggtt
    32521 ttgagattga agcgggtgat agcgaaacgg aagatggcgt agtaaacgac aaaccagatt
    32581 gccgccacca ctggcaccat gtaccacttg gttgacagac catgcaaaat accgaacacc
    32641 acgaagtcga tgatattgcc gtcggtatta ccgatggtga cgccgagcac agacatgacg
    32701 gtgaagccga ggccggttaa cagcgcgtgg atgacataca gaactggcgc tacgaacagg
    32761 aacaggaatt ccagcggttc ggtagtgccg ccaacgacgc aggcgatcag gccagaaatc
    32821 agcagacctt taattttatg gcgattttcc gggcgcgcgc agtgatacat agctaacgct
    32881 gcagctggca gaccgccgag aaacgcaggc attttacctt gcgaaaggaa acgcgtggcg
    32941 ctttcagaaa aaccgtgagt ggtcgggcaa ctcaattgcg tctggaagat ggtcagtgcg
    33001 ccgctgacgg tttgaccgca gacttcctgc gtgccgcctg cgtcggtaaa gcgaattaat
    33061 gccaccagaa tgtgatgcag accaaacggc aacagcagac gttcaccggt accaaacagc
    33121 atcggtccga aatcacccgc gctgtttatc atatggccca agccgctaat acccatggcg
    33181 aaaatcggcc agactaatgg aatcaccagg ccgacaaggc ccatcaccag cgaggagata
    33241 attggtacga agcgcgtacc gccgaagaat gccagcgcat ccggcaggcg gatattatgg
    33301 aaacgctcat gcagcatcca gacgataata ccggcgatca ccgcaccgag gatcccggta
    33361 tcgatcgact ggatcccaag aatgctctgg atgttattgg ctttcagaac cgcggcatcc
    33421 gtggttggca gaatgccttt attggtcaac cagaagttta ccgcgaggtt cattaccgca
    33481 taaccgacga agccagcgaa tgccgctacg cctttatttt cgcgtgccag gcccagcggg
    33541 atggcgatac agaacatgac aggcaggaaa ctaaaagcaa acgagccaat cttactcatc
    33601 caggtaaaga tagcctgcaa cacggggttg cccaggaccg ggatcagggt tatgacatca
    33661 tggctgctaa gagaactacc aatgccgagc ataatgccgc agaacgacaa taatgccacg
    33721 ggtaacatga aggttttgcc taactgctgg aagaactccc acagcgtgac tttcggtgct
    33781 gttttcgccg tcataaaacg actcctcgta gagaacaatc tggattcagt aaattgcgcg
    33841 agaagataaa acgttttatc aaattttagt gaggcataaa tcacattacg caacgataat
    33901 agcgggtata agataaataa aaggtaaaac gttttatctg tcacataatc agggagtagg
    33961 tcatctgcat ggctaccgcc aaaaaaataa ccattcatga tgttgcgctg gctgcgggcg
    34021 tgtcggtaag taccgtttcg ctggtgctta gtggcaaagg gcgaatctct accgccacag
    34081 gagaacgcgt taacgccgcc attgaagagc tgggatttgt gcgcaatcgc caggcgtcgg
    34141 cgctgcgcgg cgggcaaagc ggcgtcattg gtttgatcgt ccgtgattta tctgcgccgt
    34201 tttacgccga attgacggcc ggattgacgg aagctctgga agcgcaggga cggatggttt
    34261 ttttgcttca cggcggtaaa gacggcgagc agctggcaca gcggttttca ctgttactga
    34321 atcagggggt cgatggtgtg gtaattgccg gggctgcagg aagcagcgat gacctgcgac
    34381 ggatggcaga agaaaaagct atcccggtga ttttcgcttc ccgtgccagt tatcttgatg
    34441 atgttgatac ggttcgcccg gacaacatgc aggctgcaca gttgttgacg gagcatctca
    34501 ttcgcaatgg gcatcagcgg atcgcctggc tgggagggca aagttcctca ttaacccggg
    34561 cagaacgggt gggaggctat tgtgcaactc tactaaaatt tggtctgccg tttcacagcg
    34621 attgggtgct ggagtgcaca tccagccaga agcaagctgc ggaagctatc acggcgcttt
    34681 tacgtcataa cccgaccatc agtgctgtgg tttgctataa cgaaactatt gcgatggggg
    34741 catggtttgg tttgctgaaa gcagggcggc aaagcgggga aagcggagtc gatcgttact
    34801 ttgagcaaca agtttcgctg gcggcattta ccgatgcgac accaaccaca cttgatgata
    34861 tacccgttac ctgggccagc acgcctgcgc gggaacttgg taccacactt gcggatcgca
    34921 tgatgcaaaa aatcacccat gaagagacgc attcacgcaa tcttattatt cccgcccggc
    34981 tcattgcagc gaaataatcc tctctttatc tgctatacct ggtagtgtcc tttcctcaag
    35041 gttaatgata aaaaatgtgg cacacagg
//
LOCUS       DAJVSY010000025        34106 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.025, whole genome shotgun sequence.
ACCESSION   DAJVSY010000025 DAJVSY010000000
VERSION     DAJVSY010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 34106)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34106)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34106
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.025"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(270..482)
                     /gene="rpmE"
                     /locus_tag="OQQ19_001096"
     CDS             complement(270..482)
                     /gene="rpmE"
                     /locus_tag="OQQ19_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HCS1802793.1"
                     /translation="MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFF
                     TGKQRDVATGGRVDRFNKRFNIPGSK"
     gene            685..2883
                     /gene="priA"
                     /locus_tag="OQQ19_001097"
     CDS             685..2883
                     /gene="priA"
                     /locus_tag="OQQ19_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HCS1802794.1"
                     /translation="MPVAHVALPVPLPRTFDYLLPEGMTVKAGCRVRVPFGKQQERIG
                     VVVSVSDVSELPLNELKAVVEVLDVEPVFTHSVWRLLLWAADYYHHPIGDVLFHALPI
                     LLRQGRPAANAPMWYWFATEQGQAVDLNSLKRSPKQQQALAALRQGKIWRDQVATLEF
                     NDAALQALRKKGLCDLASETPEFSDWRTNYAVSGERLRLNTEQATAVGAIHSAADTFS
                     AWLLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVL
                     HSGLNDSERLSAWLKAKNGEAAIVIGTRSALFTPFKNLGVIVIDEEHDSSYKQQEGWR
                     YHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARPAIQHVL
                     DLKGQKVQAGLAPALITRMRQHLQANNQVILFLNRRGFAPALLCHDCGWIAECPRCDH
                     YYTLHQAQQHLRCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAPMFPGVPIS
                     RIDRDTTSRKGALEQQLAEVHRGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSA
                     DFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTHHPEHPLLQTLLYKGYDAFAEQALAE
                     RRMMQLPPWTSHVIVRAEDHNNQHAPLFLQQLRNLILSSPLADDKLWILGPVPALAPK
                     RGGRWRWQILLQHPSRVRLQHIISGTLALINTIPDSRKVKWVLDVDPIEG"
     gene            3039..4064
                     /gene="cytR"
                     /locus_tag="OQQ19_001098"
     CDS             3039..4064
                     /gene="cytR"
                     /locus_tag="OQQ19_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CytR"
                     /protein_id="HCS1802795.1"
                     /translation="MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRV
                     EKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLVLI
                     GDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
                     LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVD
                     PQYIARGDFTFEAGSKAMQQLLDLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLS
                     IIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHVGSGSRLMDCELIIR
                     GSTRALP"
     gene            4156..5115
                     /gene="ftsN"
                     /locus_tag="OQQ19_001099"
     CDS             4156..5115
                     /gene="ftsN"
                     /locus_tag="OQQ19_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HCS1802796.1"
                     /translation="MAQRDYVRRSQPAPSRRKKSTSRKKQRNLPAVSPAMVAIAAAVL
                     VTFIGGLYFITHHKKEESETLQSQKVTGNGLPPKPEERWRYIKELESRQPGVRAPTEP
                     SAGGEVKTPEQLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQ
                     QLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTT
                     AQSKPQQAAPVARAADAPKPTAEKKDERRWMVQCGSFRGAEQAETVRAQLAFEGFDSK
                     ITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAGG"
     gene            5208..5738
                     /gene="hslV"
                     /locus_tag="OQQ19_001100"
     CDS             5208..5738
                     /gene="hslV"
                     /locus_tag="OQQ19_001100"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HCS1802797.1"
                     /translation="MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVI
                     AGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADET
                     ASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDIC
                     IYTNHFHTIEELSYKA"
     gene            5748..7079
                     /gene="hslU"
                     /locus_tag="OQQ19_001101"
     CDS             5748..7079
                     /gene="hslU"
                     /locus_tag="OQQ19_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019841241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase ATPase subunit"
                     /protein_id="HCS1802798.1"
                     /translation="MSEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEEL
                     RHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD
                     LTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFR
                     KKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKI
                     KDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREG
                     VQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQA
                     LTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGA
                     RRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL"
     gene            7146..8072
                     /gene="menA"
                     /locus_tag="OQQ19_001102"
     CDS             7146..8072
                     /gene="menA"
                     /locus_tag="OQQ19_001102"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HCS1802799.1"
                     /translation="MTEQQISRTQAWLESLRPKTLPLAFAAIIVGTALAWWQGHFDPL
                     VALLALITAGLLQILSNLANDYGDAVKGSDRPDRIGPLRGMQKGVITQQEMKRALIIT
                     VVLICLSGLALVAVACHTLADFVGFLILGGLSIIAAITYTVGNRPYGYIGLGDISVLV
                     FFGWLSVMGSWYLQAHTLIPALILPATACGLLATAVLNINNLRDINSDRENGKNTLVV
                     RLGEVNARRYHACLLMGSLVCLALFNLFSLHSLWGWLFLLAAPLLVKQARYVMREMDP
                     VAMRPMLERTVKGALLTNLLFILGIFLSQWAA"
     gene            8165..8650
                     /gene="rraA"
                     /locus_tag="OQQ19_001103"
     CDS             8165..8650
                     /gene="rraA"
                     /locus_tag="OQQ19_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001392924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E activity regulator RraA"
                     /protein_id="HCS1802800.1"
                     /translation="MKYDTSELCDIYQEDVNVVEPLFSNFGGRASFGGQIITVKCFED
                     NGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDL
                     EELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI
                     E"
     gene            complement(8735..8980)
                     /gene="zapB"
                     /locus_tag="OQQ19_001104"
     CDS             complement(8735..8980)
                     /gene="zapB"
                     /locus_tag="OQQ19_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring assembly protein ZapB"
                     /protein_id="HCS1802801.1"
                     /translation="MTMSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ
                     NAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV"
     gene            9406..10251
                     /gene="glpF"
                     /locus_tag="OQQ19_001105"
     CDS             9406..10251
                     /gene="glpF"
                     /locus_tag="OQQ19_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol uptake facilitator protein GlpF"
                     /protein_id="HCS1802802.1"
                     /translation="MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEI
                     SVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAA
                     LVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILM
                     GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAG
                     WGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHLPCDICVVKEKETTTPSE
                     QKASL"
     gene            10274..11782
                     /gene="glpK"
                     /locus_tag="OQQ19_001106"
     CDS             10274..11782
                     /gene="glpK"
                     /locus_tag="OQQ19_001106"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HCS1802803.1"
                     /translation="MTEKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPG
                     WVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAI
                     VWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGE
                     LLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEV
                     RRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNT
                     GEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFA
                     TKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDV
                     LEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGL
                     AVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEEHDE"
     gene            11917..12927
                     /gene="glpX"
                     /locus_tag="OQQ19_001107"
     CDS             11917..12927
                     /gene="glpX"
                     /locus_tag="OQQ19_001107"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HCS1802804.1"
                     /translation="MRRELAIEFSRVTESAALAGYKWLGRGDKNTADGAAVNAMRIML
                     NQVNIDGTIVIGEGEIDEAPMLYIGEKVGTGRGDAVDIAVDPIEGTRMTAMGQANALA
                     VLAVGDKGCFLNAPDMYMEKLIVGPGAKGTIDLNLPLADNLRNVAAALGKPLSELTVT
                     ILAKPRHDAVIAEMQQLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSA
                     AVIRALDGDMNGRLLARHDVKGDNEENRRIGEQELARCKAMGIEAGKVLRLGDMARSD
                     NVIFSATGITKGDLLEGISRKGNIATTETLLIRGKSRTIRRIQSIHYLDRKDPEMQVH
                     IL"
     gene            13024..13770
                     /gene="fpr"
                     /locus_tag="OQQ19_001108"
     CDS             13024..13770
                     /gene="fpr"
                     /locus_tag="OQQ19_001108"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP(+) reductase"
                     /protein_id="HCS1802805.1"
                     /translation="MADWVTGKVTKVQNWTDALFSLTVHAPVLPFTAGQFTKLGLEID
                     GERVQRAYSYVNSPDNPDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDE
                     VPDCETLWMLATGTAIGPYLSILQLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEK
                     RYEGKLRIQTVVSRETAAGSLTGRIPALIESGELESAIGLPMNKETSHVMLCGNPQMV
                     RDTQQLLKETRQMTKHLRRRPGHMTAEHYW"
     gene            complement(13775..14203)
                     /gene="uspD"
                     /locus_tag="OQQ19_001109"
     CDS             complement(13775..14203)
                     /gene="uspD"
                     /locus_tag="OQQ19_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspD"
                     /protein_id="HCS1802806.1"
                     /translation="MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLS
                     ELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKE
                     QCDLLVCGHHHSFINRLMPAYRGMINKMSADLLIVPFIDK"
     gene            complement(14230..14529)
                     /locus_tag="OQQ19_001110"
     CDS             complement(14230..14529)
                     /locus_tag="OQQ19_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF406 domain-containing protein"
                     /protein_id="HCS1802807.1"
                     /translation="MKDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFM
                     TKLKELAAAASSADEGASVAYKIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLA"
     gene            complement(14741..15181)
                     /locus_tag="OQQ19_001111"
     CDS             complement(14741..15181)
                     /locus_tag="OQQ19_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HCS1802808.1"
                     /translation="MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDI
                     QTAAFCLVCLLWPTAAVTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVG
                     CFVPTLILVMMLIDLGAFVGTQGENKYGKDTQDVKYKADNKSSN"
     gene            15282..15881
                     /locus_tag="OQQ19_001112"
     CDS             15282..15881
                     /locus_tag="OQQ19_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiQ family protein"
                     /protein_id="HCS1802809.1"
                     /translation="MKPGCTLFFLLCSALTVTTTAHAQTPDTATTAPYLLAGAPTFDL
                     SISQFREDFNSQNPSLPLNEFRAIDSSPDKANLTRAASKINENLYASTALERGTLKIK
                     SIQMTWLPIQGPEQKAAKAKAQEYMAAVIRTLTPLMTKTQSQKKLQSLLTAGKNKRYY
                     TETEGALRYVVADNGEKGLTFAVEPIKLALSESLEGLNK"
     gene            15989..16756
                     /gene="tpiA"
                     /locus_tag="OQQ19_001113"
     CDS             15989..16756
                     /gene="tpiA"
                     /locus_tag="OQQ19_001113"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HCS1802810.1"
                     /translation="MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPE
                     MYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYH
                     KESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFE
                     GAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNA
                     AELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA"
     gene            complement(16811..17566)
                     /gene="cdh"
                     /locus_tag="OQQ19_001114"
     CDS             complement(16811..17566)
                     /gene="cdh"
                     /locus_tag="OQQ19_001114"
                     /EC_number="3.6.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol diphosphatase"
                     /protein_id="HCS1802811.1"
                     /translation="MKKAGLLFLVMIVIAVVAAGIGYWKLTGEESDTLRKIVLEECLP
                     NQQQNQNPSPCAEVKPNAGYVVLKDLNGPLQYLLMPTYRINGTESPLLTDPSTPNFFW
                     LAWQARDFMSKKYGQPVPDRAVSLAINSRTGRTQNHFHIHISCIRPDVREQLDNNLAN
                     ISSRWLPLPGGLRGHEYLARRVTESELVQRSPFMMLAEEVPEAREHMGSYGLAMVRQS
                     DNSFVLLATQRNLLTLNRASAEEIQDHQCEILR"
     gene            complement(17673..18662)
                     /gene="sbp"
                     /locus_tag="OQQ19_001115"
     CDS             complement(17673..18662)
                     /gene="sbp"
                     /locus_tag="OQQ19_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter
                     substrate-binding protein Sbp"
                     /protein_id="HCS1802812.1"
                     /translation="MNKWGVGLTFLLAATSVMAKDIQLLNVSYDPTRELYEQYNKAFS
                     AHWKQQTGDNVVMRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEWI
                     KRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAW
                     GYALHHNNNDQAKAQDFVRALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLA
                     ANELGKDKFEIVTPSESILAEPTVSVVDKVVEKKGTKEVAEAYLKYLYSPEGQEIAAK
                     NYYRPRDAEVAKKYENAFPKLKLFTIDEEFGGWTKAQKEHFANGGTFDQISKR"
     gene            complement(18982..19944)
                     /gene="pfkA"
                     /locus_tag="OQQ19_001116"
     CDS             complement(18982..19944)
                     /gene="pfkA"
                     /locus_tag="OQQ19_001116"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014072359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HCS1802813.1"
                     /translation="MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLG
                     LYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIG
                     GDGSYMGAMRLTEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS
                     HQRISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAI
                     VAITEHMCDVDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLL
                     LAGYGGRCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAKKLY"
     gene            complement(20125..21027)
                     /gene="fieF"
                     /locus_tag="OQQ19_001117"
     CDS             complement(20125..21027)
                     /gene="fieF"
                     /locus_tag="OQQ19_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312867.1"
                     /note="FieF, a metal efflux transporter, is a member of
                     the CDF (cation diffusion facilitator) family of
                     transporters; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter FieF"
                     /protein_id="HCS1802814.1"
                     /translation="MNQSYGRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALV
                     DSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGI
                     QHLISPTPMIDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMM
                     NGAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEI
                     IDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFP
                     GSDVIIHQDPCSVVPREGKRSMLS"
     gene            complement(21175..21675)
                     /gene="cpxP"
                     /locus_tag="OQQ19_001118"
     CDS             complement(21175..21675)
                     /gene="cpxP"
                     /locus_tag="OQQ19_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell-envelope stress modulator CpxP"
                     /protein_id="HCS1802815.1"
                     /translation="MRIVTAAVMASTLAVSSLSHAAEVGSGDNWHPGEELTQRSTQSH
                     MFDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAENFDENAVRAQAEKM
                     ANEQIARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQWQKSSSLKLLSS
                     SNSRSQ"
     gene            21825..22523
                     /gene="cpxR"
                     /locus_tag="OQQ19_001119"
     CDS             21825..22523
                     /gene="cpxR"
                     /locus_tag="OQQ19_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response regulator transcription
                     factor CpxR"
                     /protein_id="HCS1802816.1"
                     /translation="MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS
                     IDLLLLDVMMPKKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPF
                     NDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGT
                     EFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWF
                     KTLRGRGYLMVSAS"
     gene            22520..23893
                     /gene="cpxA"
                     /locus_tag="OQQ19_001120"
     CDS             22520..23893
                     /gene="cpxA"
                     /locus_tag="OQQ19_001120"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress sensor histidine kinase CpxA"
                     /protein_id="HCS1802817.1"
                     /translation="MIGSLTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLDSEQR
                     QGLMIEQHVEAELANDPPNDLMWWRRLFRAIDKWAPPGQRLLLVTTEGRVIGAERSEM
                     QIIRNFIGQADNADHPQKKKYGRVELVGPFSVRDGEDNYQLYLIRPASSSQSDFINLL
                     FDRPLLLLIVTMLVSTPLLLWLAWSLAKPARKLKNAADEVAQGNLRQHPELEAGPQEF
                     LAAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELER
                     IETEAQRLDSMINDLLVMSRNQQKNALVSETIKANQLWSEVLDNAAFEAEQMGKSLTV
                     NFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVS
                     PEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIW
                     LPLYKRS"
     gene            complement(23999..24673)
                     /gene="yiiM"
                     /locus_tag="OQQ19_001121"
     CDS             complement(23999..24673)
                     /gene="yiiM"
                     /locus_tag="OQQ19_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418346.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-N-hydroxylaminopurine resistance protein"
                     /protein_id="HCS1802818.1"
                     /translation="MRYPVDVYTGKIQAYPEGKPSAIAKIQVDGELMLTELGLEGDEQ
                     AEKKVHGGPDRALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVYMGD
                     IFRWGEALIQVSQPRSPCYKLNYHFDISDIAQLMQNTGKVGWLYSVIAPGKVSADAPL
                     ELVSRVSDVTVQEAAAIAWHMPFDDDQYHRLLSAAGLSKSWTRTMQKRRLSGKIEDFS
                     RRLWGK"
     gene            complement(24822..25787)
                     /gene="kdgT"
                     /locus_tag="OQQ19_001122"
     CDS             complement(24822..25787)
                     /gene="kdgT"
                     /locus_tag="OQQ19_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001309889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxygluconate transporter"
                     /protein_id="HCS1802819.1"
                     /translation="MRKSRGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVSI
                     LAVWFFCMGASIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAG
                     LSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASF
                     EPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGL
                     LGILLGVAVIIVTGVPLIIADKLIGGGDGTAGIAASSSAGAAVATPMLIAEMVPAFKP
                     MAPAATSLVATAVIVTSILVPILTSIWSRKVKARAAKIEILGTVK"
     gene            complement(26066..26686)
                     /gene="sodA"
                     /locus_tag="OQQ19_001123"
     CDS             complement(26066..26686)
                     /gene="sodA"
                     /locus_tag="OQQ19_001123"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010345169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Mn]"
                     /protein_id="HCS1802820.1"
                     /translation="MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALE
                     SLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA
                     IERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGAS
                     GFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK"
     gene            26970..28004
                     /gene="rhaT"
                     /locus_tag="OQQ19_001124"
     CDS             26970..28004
                     /gene="rhaT"
                     /locus_tag="OQQ19_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose/proton symporter RhaT"
                     /protein_id="HCS1802821.1"
                     /translation="MSNAITMGIFWHLIGAASAACFYAPFKKVKKWSWETMWSVGGIV
                     SWIILPWAISALLLPNFWAYYSSFSLSTLLPVFLFGAMWGIGNINYGLTMRYLGMSMG
                     IGIAIGITLIVGTLMTPIINGNFDVLLNTEGGRMTLLGVLVALIGVGIVTRAGQLKER
                     KMGIKAEEFNLKKGLVLAVMCGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYV
                     IIMGGGAIINLGFCFIRLAKVKDLSLKADFSLAKPLIIHNVLLSALGGLMWYLQFFFY
                     AWGHARIPAQYDYISWMLHMSFYVLCGGIVGLVLKEWNNAGRRPVTVLSLGCVVIIVA
                     ANIVGIGMAN"
     gene            complement(28001..28867)
                     /gene="rhaR"
                     /locus_tag="OQQ19_001125"
     CDS             complement(28001..28867)
                     /gene="rhaR"
                     /locus_tag="OQQ19_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418342.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator RhaR"
                     /protein_id="HCS1802822.1"
                     /translation="MAEVATVAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDF
                     CELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKL
                     NLDWQGAIPGFSASAGQPHWRLGSVGMAQARQVIGQLEHESSQHVSFANEMAELLFGQ
                     LVMLLNRHRYTSDSLPPTSSETLLDKLITRLAASLKSPFALDKFCDEASCSERVLRQQ
                     FRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMT
                     PSQWRHLNSQKD"
     gene            complement(28923..29759)
                     /gene="rhaS"
                     /locus_tag="OQQ19_001126"
     CDS             complement(28923..29759)
                     /gene="rhaS"
                     /locus_tag="OQQ19_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator RhaS"
                     /protein_id="HCS1802823.1"
                     /translation="MTVLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFHEIVIVEHG
                     TGIHVFNGQPYTITGGTVCFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLL
                     PQELDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKS
                     SLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQR
                     YLNRLRLMKARHLLRHSEASVTDIAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGF
                     LQ"
     gene            30047..31459
                     /gene="rhaB"
                     /locus_tag="OQQ19_001127"
     CDS             30047..31459
                     /gene="rhaB"
                     /locus_tag="OQQ19_001127"
                     /EC_number="2.7.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulokinase"
                     /protein_id="HCS1802824.1"
                     /translation="MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHS
                     QNGYVTWNVDSLESAIRLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVDLPVAY
                     RDSRSNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLM
                     PDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIG
                     HWICPQGNEIPVVAVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTA
                     LAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIAATQALPACRFIINP
                     NDDRFINPEAMCSEIQAACRETAQPIPESDAELAQLRGEDFSQLHIVGGGCQNTLLNQ
                     LCADACGIRVIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDS
                     EIAHYVAQLHSTRQTKELCA"
     gene            31456..32715
                     /gene="rhaA"
                     /locus_tag="OQQ19_001128"
     CDS             31456..32715
                     /gene="rhaA"
                     /locus_tag="OQQ19_001128"
                     /EC_number="5.3.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose isomerase"
                     /protein_id="HCS1802825.1"
                     /translation="MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDD
                     VSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESD
                     TPVSRDQIKPEHFKNWGEWAKANQLGLDFNPSCFSHPLSADGFTLSHPDDSIRQFWID
                     HCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISKKLNP
                     AHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAA
                     MLYVPQLLLHVSRPVRWDCDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINH
                     IAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYC
                     QRHDTPAGSEWLESVRAYEKEILSQRG"
     gene            32982..33806
                     /gene="rhaD"
                     /locus_tag="OQQ19_001129"
     CDS             32982..33806
                     /gene="rhaD"
                     /locus_tag="OQQ19_001129"
                     /EC_number="4.1.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulose-1-phosphate aldolase"
                     /protein_id="HCS1802826.1"
                     /translation="MQNITQSWFVQGMIKATTDAWLKGWDERNGGNLTLRLDDADIAP
                     YKDNVHAQPRYIPLSQPMPLLANTPFIVTGSGKFFRNVQLDPAANLGVVKVDSDGAGY
                     HILWGLTNEAVPTSELPAHFLSHCERIKATNGKDRVIMHCHATNLIALTYVLENDTAV
                     FTRQLWEGSTECLVVFPDGVGILPWMVPGTDEIGQATAQEMQKHSLVLWPFHGVFGSG
                     STLDETFGLIDTAEKSAQVLVKVYSMGGMKQTISREELIALGKRFGVTPLASALAL"
     gene            33816..>34106
                     /gene="rhaM"
                     /locus_tag="OQQ19_001130"
     CDS             33816..>34106
                     /gene="rhaM"
                     /locus_tag="OQQ19_001130"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HCS1802827.1"
                     /translation="MIRKAFVMQVNPDAHEEYQRRHNPIWPELEAVLKSHGAHNYAIY
                     LDKARNLLFATVEIESEERWNAVASTDVCQRWWKYMTDVMPANPDNSPVSSEL"
BASE COUNT         8364 a         8897 c         8848 g         7997 t
ORIGIN      
        1 gaacaggcca cgccggtggg agcaccaatg cgcaccccgg ctgaaccctg aacaatgcta
       61 ccgccatact gcgtcatgtc gccctgacgc gccgccggtt ttccgctcat cgtaaaatcc
      121 ttttgaaata aataagaacc agaagcctag cgccagtcaa caacaggaaa tgataatgag
      181 ttaacacccc ggaatttttc agaatttata aaaggcaaaa ttcaggcaca aaaaaagcgc
      241 cgtgcggcgc ttttttcgga aatccggtct tatttgctgc ccgggatgtt gaaacgcttg
      301 ttgaagcggt caacacggcc accggtagca acatcacgct gtttgccagt gaagaacggg
      361 tggcacttgc tgcacacgtc gaggttcagg tcatgaccaa cagtggagcg gattttcatt
      421 acgttaccgc aagagcagct agcagtaatt tcttcgtatt tcgggtgaat atcttttttc
      481 atgggaaaac ctcggtttaa ggccgcgtcg ctcttccagc cctaacgcca gacaccacgc
      541 gatgttaaaa gtatagcttc aatacgatca tttcgtacga aggcgcgaaa tcatacagaa
      601 attaaccagc gtatgcaaac tgatccgcac tcttctacgg caatgtgtat actaacccac
      661 cgaatttcaa gtcaggatga tgctatgccc gttgcccacg ttgccttgcc cgttccgctt
      721 cctcgtacct ttgactatct gctgccagaa ggcatgacgg ttaaagccgg gtgtcgcgtg
      781 cgcgtgccgt ttggcaaaca gcaggagcgc atcggggttg tggtgtcagt tagcgatgtc
      841 agtgagctgc cgcttaacga gctgaaagcg gtagtggaag tgctggacgt tgagccggta
      901 tttactcact ccgtctggcg gttactgctc tgggcggcag attactatca tcatccgatt
      961 ggcgatgtgc tgtttcatgc cttgccgatt ttactgcgcc aggggcggcc tgcggcgaac
     1021 gcgccgatgt ggtactggtt tgccactgaa caaggccagg cggtggatct gaacagcctg
     1081 aaacgctccc ccaagcaaca acaggcgctg gcggcgttac ggcaaggcaa aatctggcgc
     1141 gaccaggtcg ccacgctcga atttaatgat gccgcgttgc aggcgctacg caaaaaaggt
     1201 ctgtgtgatt tagcaagtga aacaccagag tttagcgact ggcgaacgaa ctatgccgtt
     1261 tctggtgagc ggttgcgatt gaataccgaa caggccaccg ccgttggcgc aattcatagc
     1321 gcggcagata ctttttctgc ctggctgctg gcgggcgtta ccggttccgg taaaacggag
     1381 gtttatctca gtgtactgga aaacgtgctc gctcagggca aacaggcgct ggtgatggtg
     1441 ccggaaatcg gcctgacacc gcaaactatc gcccgttttc gtgaacgttt taatgccccc
     1501 gtggaagttc tgcattccgg cctgaacgac agcgagcggc tttctgcgtg gttgaaagcg
     1561 aaaaatggcg aggcggcgat tgtgatcggc acccgctccg cgctgtttac gccgtttaaa
     1621 aatctcggcg tgattgtcat tgatgaagag cacgacagct cctacaagca gcaggaaggc
     1681 tggcgctatc atgcccgcga cctggcggtg tatcgtgcgc acagcgagca aatcccgatt
     1741 attcttggct ccgcaacgcc cgcgctggaa acgttatgca acgtccagca gaaaaaatac
     1801 cgcctgctgc gcctgacccg tcgggcaggg aatgctcgtc cggcaattca acatgtgctg
     1861 gatttaaaag gtcagaaggt gcaggcaggt ctggctccgg cgttaatcac ccgtatgcgc
     1921 cagcatttac aggccaacaa tcaggttatc ctctttctta atcgtcgggg ttttgcgcct
     1981 gcgctgctgt gccacgactg cggctggata gccgaatgcc cacgttgcga tcactactac
     2041 acgctgcatc aggcgcaaca gcatttgcgc tgtcaccact gtgacagtca gcgtccggtg
     2101 ccgcgccagt gcccttcctg cggttccacg cacctggtcc ccgtggggct gggcaccgaa
     2161 cagcttgaac agacgcttgc gccgatgttc cccggcgtgc ccatttcacg tatcgaccgc
     2221 gataccacca gccgcaaagg ggcactggaa cagcaactgg cggaagtgca tcgcggcggc
     2281 gcgaggattt tgatcggcac acaaatgctg gcgaaaggtc accactttcc ggatgtgacg
     2341 ctggtggcgt tactggatgt ggacggcgcg ctgttttctg ccgattttcg ctcggcagaa
     2401 cgtttcgccc agctttacac ccaggtcgcc ggtcgtgccg ggcgtgcggg taaacagggc
     2461 gaagtggtgc tgcaaacgca ccatccggaa catcctctgt tgcaaacgtt gctctataaa
     2521 ggctacgacg cctttgccga acaggcgctg gctgagcgac gcatgatgca gctgccgccg
     2581 tggaccagcc atgtgattgt gcgtgcggaa gatcataaca atcagcacgc gccgctgttc
     2641 ctgcaacaac tgcgtaatct gatcctttcc agcccgctgg cagacgacaa actgtggatt
     2701 ctcggcccgg ttccggctct ggcacctaag cgtggtggcc gctggcgctg gcagatcttg
     2761 ttgcagcacc cttcccgcgt gcgcttgcaa cacatcatta gtggtacgct ggcgcttatt
     2821 aatacaatac cggattcccg caaggtgaaa tgggtgttgg atgtcgatcc catcgaaggc
     2881 taatgcgcaa acgttgcgag gcggatcgaa aaattcaata ttcatcacac ttttcatgaa
     2941 aattctgtaa ccgttttcac gcgctatctg ctaaaaatgt tgccgatgtg aagtaaacat
     3001 ggatgtagta cgcctgacgt accaggcgag gagtgagtgt gaaagcgaag aagcaggaaa
     3061 ctgccgcgac catgaaagac gttgccctca aggcaaaagt ctctacagcg actgtctccc
     3121 gagcattaat gaatcccgat aaagtctccc aggccacccg taatcgggtt gaaaaagcgg
     3181 cccgggaagt gggttattta ccgcagccta tggggcgcaa cgtcaagcgt aatgaatccc
     3241 gcaccattct ggtgattgtc ccggatatct gcgatccctt ctttagcgaa attattcgcg
     3301 gtatcgaagt tacggcggca aatcacggat atctggtgct gattggcgac tgtgcgcatc
     3361 aaaatcagca ggaaaaaacc tttatcgatt tgatcatcac caagcaaatt gatggcatgt
     3421 tgctgctggg ttcaaggctg ccgtttgatg ccagcattga ggaacagcgt aatctgccgc
     3481 cgatggtgat ggcgaacgaa tttgcaccgg aactggagct gcctaccgtt catatcgaca
     3541 atctgaccgc cgcatttgat gcagtaaatt atttatatga gcaagggcat aaacggattg
     3601 gctgtatagc cggtcccgaa gagatgccac tgtgtcacta ccgcctgcaa ggctatgttc
     3661 aggcgctgcg tcgctgcgga attatggttg atccacaata catcgcccgt ggcgacttca
     3721 ccttcgaagc cggaagcaaa gcaatgcaac agctgcttga tcttccacaa ccgcctactg
     3781 cagtcttctg ccatagcgat gtgatggcgc tcggcgcact ttctcaggca aaacgccagg
     3841 ggctgaaagt cccggaagac ctttccataa tcggttttga taacatcgac ctgacgcaat
     3901 tttgtgatcc gccgctgaca accatcgcgc agccgcgtta cgaaatcggt cgggaagcta
     3961 tgctgttatt gcttgatcaa atgcaggggc aacacgttgg cagtggctct cgtttaatgg
     4021 actgcgaact tatcatccgg ggatcaacac gcgcgttacc ttaaagtaaa cctttaagac
     4081 tgccgtgact ggtcaaaggc ccgccgctta agtaacatgg cgggctgacg aacgaataaa
     4141 tacagcgaaa cgatagtggc acaacgagat tatgtacgcc gcagccaacc ggcaccttcg
     4201 cggcgaaaaa agagcacctc acggaaaaag caacgaaatc tgcctgcggt ttctcccgct
     4261 atggtcgcta ttgctgccgc cgttcttgtg acctttatcg gtggtctgta cttcattacg
     4321 catcacaaga aagaagagtc cgagacgctg caaagccaga aagtgaccgg aaacggacta
     4381 ccaccaaaac cagaagaacg ctggcgctac attaaagagc tggaaagtcg ccagccgggt
     4441 gtgcgtgcgc ccacagaacc ttctgccggt ggtgaagtga aaacgccgga gcaactgaca
     4501 ccagaacaac gtcagcttct tgaacaaatg caggctgata tgcgccagca gccaacgcag
     4561 ctggttgagg ttccgtggaa tgaacagacg ccggaacagc gtcagcaaac gctacaacgc
     4621 cagcgtcagg cgcagcaatt agcggagcag caacgcctgg ctcagcagtc gcgtacgact
     4681 gaacaaagct ggcagcagca gacgcgtacg tcgcaagccg cgccggtaca ggcgcaaccg
     4741 cgccagtcta aaccagcttc tactcagcag ccgtaccagg atctgctgca aacccctgcg
     4801 cacacgaccg cgcagtcgaa gccgcagcaa gctgcaccgg ttgctcgtgc cgctgacgcg
     4861 ccaaaaccga cggcggagaa aaaagacgaa cgccgctgga tggtgcagtg cggttcgttc
     4921 agaggcgcgg aacaggcaga gacggtacgt gctcagctgg cgttcgaagg atttgactcg
     4981 aaaatcacca ccaacaatgg ctggaatcgt gtggtcattg gcccggtgaa aggcaaagag
     5041 aacgcagaca gcaccctcaa tcggttgaag atggcgggtc atacaaactg cattcggctc
     5101 gccgccgggg gttgaaaccc tcaaaatccc ccccatctat aattgcatta tgcctcgtac
     5161 ttttgtacgg ggtttgtact ctgtattcgt aaccaagggg tcagctcgtg acaactatag
     5221 taagcgtacg ccgtaacggc catgtggtca tcgctggtga tggtcaggcc acgttgggca
     5281 ataccgtaat gaaaggcaac gtgaaaaagg tccgccgtct gtacaacgac aaagtcatcg
     5341 cgggctttgc gggcggtact gcggatgctt ttacgctgtt cgaactgttt gaacgtaaac
     5401 tggaaatgca tcagggccat ctggttaaag ccgccgttga gctggcaaaa gactggcgta
     5461 ccgatcgcat gctgcgcaaa cttgaagcac tgctggcagt cgcggatgaa actgcatcgc
     5521 ttatcatcac cggtaacggt gacgtggtgc agccagaaaa cgatcttatt gctatcggct
     5581 ccggcggccc ttacgcccag gctgcggcgc gcgcgctgtt agaaaacact gaacttagcg
     5641 cccgtgaaat tgctgaaaag gcgttggata ttgcaggcga catttgcatc tataccaacc
     5701 atttccacac catcgaagaa ttaagctaca aagcgtaagg atctcccatg tctgaaatga
     5761 ccccacgcga aatcgtcagc gaactggata agcacatcat cggccaggac aacgccaagc
     5821 gttctgtggc gattgctctg cgtaaccgct ggcgtcgcat gcagctcaac gaagagctgc
     5881 gccatgaagt gaccccgaaa aatatcctga tgatcggccc gaccggtgtc ggtaaaactg
     5941 aaatcgcccg tcgtctggct aagctggcga atgcgccgtt catcaaagtt gaagcgacca
     6001 aattcaccga agtgggctat gtcggtaagg aagtggattc tattattcgc gatctgaccg
     6061 atgccgccgt gaaaatggta cgcgtccagg ctatcgagaa aaaccgttat cgcgctgaag
     6121 aactggcaga agaacgtatt ctcgacgtgc tgatcccacc tgctaaaaac aactggggac
     6181 agaccgaaca gcagcaggaa ccgtccgctg ctcgtcaggc attccgcaaa aaactgcgtg
     6241 aaggccagct tgatgacaaa gaaatcgaga tcgatcttgc cgcagcaccg atgggcgttg
     6301 aaattatggc tcctccaggc atggaagaga tgaccagcca gctgcagtcc atgttccaga
     6361 acctgggcgg ccagaagcaa aaagcgcgta agctgaaaat caaagacgcc atgaagctgc
     6421 tgattgaaga agaagcggcg aaactggtga acccggaaga gctgaagcaa gacgctatcg
     6481 acgctgttga gcagcacggg atcgtgttta tcgacgaaat cgacaaaatc tgtaagcgcg
     6541 gcgagtcttc cggtccggat gtttctcgtg aaggcgttca gcgtgacctg ctgccgctgg
     6601 tagaaggttg caccgtttcc accaaacacg ggatggtcaa aactgaccac attctgttta
     6661 tcgcttctgg cgcgttccag attgcgaaac cgtctgacct aatcccggaa ctgcaaggtc
     6721 gtctgccaat ccgcgttgaa ctgcaggcac tgaccaccag cgacttcgag cgtattctga
     6781 ccgagccgaa tgcctctatc accgtgcagt acaaagcact gatggcgact gaaggcgtaa
     6841 atatcgagtt taccgactcc ggtattaaac gcatcgcgga agcggcatgg caggtgaacg
     6901 aatctaccga aaacatcggt gctcgtcgtt tacacactgt tctggagcgt ttaatggaag
     6961 agatttccta cgacgccagc gatttaagcg gtcaaaatat cactattgac gcagattatg
     7021 tgagcaaaca tctggatgcg ttggtggcag atgaagatct gagccgtttt atcctataat
     7081 cgcgttcaat cattttcatc attgtttgat ggggctgaaa ggccccattt ttattggcgc
     7141 gtattatgac tgaacaacaa attagccgaa ctcaggcgtg gctggaaagt ttacgaccta
     7201 aaaccctccc cctcgccttt gctgcaatta tcgtcgggac ggcgctggca tggtggcaag
     7261 gtcattttga tccgctggtc gccctgctgg cactgattac cgccgggcta ttacagatcc
     7321 tttctaacct cgccaatgat tacggcgatg cggtaaaagg cagcgataga cctgaccgca
     7381 ttgggccgct acgcggcatg caaaaagggg tcattaccca gcaagagatg aaacgggcgc
     7441 tcattattac cgtcgtgctc atctgtctct ccgggctggc actggttgca gtggcgtgcc
     7501 atacgctggc tgattttgtc ggtttcctga ttcttggcgg gttgtcgatc attgccgcta
     7561 tcacctacac cgtgggcaat cgtccttatg gttatatcgg tctgggggat atttccgtac
     7621 tggttttctt tggctggtta agcgtcatgg ggagctggta tttacaggct catacattga
     7681 ttccggcact gatccttccg gcgaccgcat gcggcctgct ggcaacggca gtactgaaca
     7741 ttaataacct gcgtgatatc aatagcgacc gagaaaacgg caaaaacacg ctggtggtgc
     7801 gcttaggtga agtgaacgcg cgtcgttatc atgcctgcct gctgatgggc tctctggtat
     7861 gtctggcgct gtttaatctc ttttcgctgc atagcctgtg gggctggctg ttcctgctgg
     7921 cggcaccgtt gctggtgaag caagcccgtt atgtgatgcg ggaaatggac ccggtggcga
     7981 tgcgaccgat gctggaacgc actgtcaagg gggcgttact gactaacctg ctgtttattt
     8041 tagggatatt cctaagccag tgggcagcat aactgacaaa tatcaattaa caattgatga
     8101 ttttgccaac agcccacata gcgcgatata ctgaaaattc tcgcagcaac tgaatgttaa
     8161 gcctatgaaa tacgatactt ccgagctttg tgacatctat caagaagatg ttaacgtcgt
     8221 ggaaccgctg ttctccaact ttggcggacg ggcgtcgttt ggcggacaaa taatcacggt
     8281 aaaatgtttc gaggacaacg ggttgctgta cgatctgctc gaacagaatg gccgtggtcg
     8341 tgttcttgtc gtcgatggcg gtggttctgt tcgtcgcgca ctggtcgatg ctgaactggc
     8401 gcgtctggca gtacaaaatg aatgggaagg tctggttatt tacggcgcgg tgcgtcaggt
     8461 agatgacctg gaagagttgg atatcggcat ccaggcgatg gcggcaattc cggttggtgc
     8521 cgctggcgaa ggcattggcg aaagcgatgt ccgcgtcaat tttggcggtg taaccttctt
     8581 ctccggcgac catctttatg ccgacaatac cgggattatt ctttcagaag atccgctgga
     8641 tattgaatga taagaaaggc accgcaaggt gccttttttc tgcgttacct gttggcctac
     8701 acagtaaaga aattacgcga aagatgaagc gtaatcagac ctcttccatg cgacccagca
     8761 gggcctgcag acgttcctgc cagccgttct gctgttcttt cagatggttg ttctcacgct
     8821 ccagctcttc gcgctgatgc tgggcatttt gaacttcctg cgacagtgag ttgttttttt
     8881 ctttcagctc ttcgatttcc atctgcaaca gagtgatggt atcaatcgcc tgctgtactt
     8941 ttgcttccag tttctcaaac acttctaatg acattgtcat acctctcctg aattgcaagg
     9001 cgttgatgga taaaaaatcc tcgtcccgat taccggtgac gccttaataa atacgagcgc
     9061 actttagtta gctccgattg tatgaagccg cgccatcgct gtccagcggc acgccttgca
     9121 gattacggtt tgccacactt ttcatccttc tcctggtgac ataatccaca tcaatcgaaa
     9181 atgttaataa atttgttgcg cgaatgatct aacaaacatg catcatgtac aatcagatgg
     9241 aataaatggc gcgataacgc tcattttatg acgaagcaca cacattttaa gttcgatatt
     9301 tctcgttttt gctcgttaac gataagttaa cagcatgcct acaagcatcg tggaggtccg
     9361 tgactttcac gcatacaaca aacattaact cttcaggatc cgattatgag tcaaacatca
     9421 accttgaaag gccagtgcat tgctgaattc ctcggtaccg ggttgttgat ttttttcggt
     9481 gtgggttgcg ttgcagcact aaaagtcgct ggtgcgtctt ttggtcagtg ggaaatcagt
     9541 gtcatttggg gactgggggt ggcaatggct atctacctga ccgcaggggt ttccggcgcg
     9601 catcttaatc ccgctgttac cattgcattg tggctgtttg cctgtttcga caagcgcaaa
     9661 gttattcctt ttatcgtttc acaagttgcc ggcgctttct gtgctgcggc tttagtttac
     9721 gggctttact acaatttatt tttcgacttc gagcagactc atcacattgt tcgcggcagc
     9781 gttgaaagtg ttgatctggc aggcactttc tctacttacc ctaatcctca tatcaatttt
     9841 gtgcaggctt tcgcagttga gatggtgatt accgctattc tgatggggct gatcctggcg
     9901 ttaacggacg atggcaacgg tgtaccacgc ggccctttgg ctcccttgct gattggtcta
     9961 ctgattgcgg tcattggcgc atctatgggc ccattgacgg gttttgccat gaacccagcg
    10021 cgtgacttcg gtccgaaagt ctttgcctgg ctggcgggct ggggcaatgt cgcctttacc
    10081 ggcggcagag acattcctta cttcctggtg ccgctttttg gccctatcgt tggcgcgatt
    10141 gtaggtgcat ttgcctaccg caaactgatt ggtcgccatt tgccttgcga tatctgtgtt
    10201 gtgaaagaaa aggaaaccac aactccttca gaacaaaaag cttcgctgta atatgactac
    10261 gggacaatta aacatgactg aaaaaaaata tatcgttgcg ctcgaccagg gcaccaccag
    10321 ctcccgcgcg gtcgtaatgg atcacgatgc caatatcatt agcgtgtcgc agcgcgaatt
    10381 tgagcaaatc tacccaaaac caggttgggt agaacacgac ccaatggaaa tctgggccac
    10441 ccaaagctcc acgctggtag aagtgctggc gaaagccgat atcagttccg atcaaattgc
    10501 agctatcggt attacgaacc agcgtgaaac cactattgtc tgggaaaaag aaaccggcaa
    10561 gcctatctat aacgccattg tctggcagtg ccgtcgtacc gcagaaatct gcgagcattt
    10621 aaaacgtgac ggtttagaag attatatccg cagcaatacc ggtctggtga ttgacccgta
    10681 cttttctggc accaaagtga agtggatcct cgaccatgtg gaaggctctc gcgagcgtgc
    10741 acgtcgtggt gaattgctgt ttggtacggt tgatacgtgg cttatctgga aaatgactca
    10801 gggccgtgtc catgtgaccg attacaccaa cgcctctcgt accatgttgt tcaacatcca
    10861 taccctggac tgggacgaca aaatgctgga agtgctggat attccgcgcg agatgctgcc
    10921 agaagtgcgt cgttcttccg aagtatacgg tcagactaac attggcggca aaggcggcac
    10981 gcgtattcca atctccggga tcgccggtga ccagcaggcc gcgctgtttg gtcagttgtg
    11041 cgtgaaagaa gggatggcga agaacaccta tggcactggc tgctttatgc tgatgaacac
    11101 tggcgagaaa gcggtgaaat cagaaaacgg cctgctgacc accatcgcct gcggcccgac
    11161 tggcgaagtg aactatgcgt tggaaggtgc ggtgtttatg gcaggcgcat ccattcagtg
    11221 gctgcgcgat gagatgaagt tgattaacga cgcctacgat tccgaatatt tcgccaccaa
    11281 agtgcaaaac accaatggtg tgtatgtggt tccggcattt accgggctgg gtgcgccgta
    11341 ctgggacccg tatgcgcgcg gggcgatttt cggtctaact cgtggggtga acgctaacca
    11401 cattatacgc gcgacgctgg agtctattgc ttatcagacg cgtgacgtgc tggaagcgat
    11461 gcaggccgac tctggtatcc gtctgcacgc cctgcgcgtg gatggtggcg cagtagcaaa
    11521 caatttcctg atgcagttcc agtccgatat tctcggcacc cgcgttgagc gcccggaagt
    11581 gcgcgaagtc accgcattgg gtgcggccta tctcgcaggc ctggcggttg gcttctggca
    11641 gaacctcgac gagctgcaag agaaagcggt gattgagcgc gagttccgtc caggcatcga
    11701 aaccactgag cgtaattacc gttacgcagg ctggaaaaaa gcggtcaaac gcgcgatggc
    11761 gtgggaagaa cacgacgagt aatgtaaatg ccggatgaag cgtttatgcc gcatccggta
    11821 gtcctgaaac gtgcgggggc aaccccgcac acatcaataa tcccaccctt cccctgtgct
    11881 acacttcgcg ccattcctta ctgcttagag tttgctatga gacgagaact tgccatcgaa
    11941 ttttcccgcg tcaccgaatc tgcggcgctg gctggctaca aatggttagg acgcggcgat
    12001 aaaaacaccg cggacggcgc ggcggtaaac gccatgcgta ttatgctcaa ccaggtcaac
    12061 attgacggca ccatcgtcat tggtgaaggt gaaatcgacg aagcaccgat gctctacatt
    12121 ggtgaaaaag tcggtactgg tcgcggcgac gcggtagata ttgctgttga tccgattgaa
    12181 ggcacgcgca tgacggcgat gggccaggct aacgcgctgg cggtgctggc agtaggcgat
    12241 aaaggctgct tcctcaatgc gccggatatg tatatggaga agctgattgt cgggccggga
    12301 gccaaaggca ccattgatct gaacctgccg ctggcggata acctgcgcaa tgtagcggcg
    12361 gcgctcggca aaccgttgag cgaactgacg gtaacgattc tagctaaacc acgccacgat
    12421 gccgttatcg ctgaaatgca gcaactcggc gtacgcgtat ttgctattcc ggatggcgac
    12481 gttgcggcct caattctcac ctgtatgcca gacagcgaag ttgacgtgct gtacggtatt
    12541 ggtggcgcgc cggaaggcgt agtttctgcg gcggtgatcc gcgcattaga tggcgacatg
    12601 aacggtcgtc tgctggcgcg tcatgacgtc aaaggcgaca acgaagagaa tcgtcgcatt
    12661 ggcgagcagg agctggcacg ctgcaaagcg atgggcatcg aagccggtaa agtattgcgc
    12721 ctgggcgata tggcgcgcag cgataacgtc atcttctctg ccaccggtat taccaaaggc
    12781 gatctgctgg aaggcattag ccgcaaaggc aatatcgcga ctaccgaaac gctgctgatc
    12841 cgcggcaagt cacgcaccat tcgccgcatt cagtccatcc actatctgga tcgcaaagac
    12901 ccggaaatgc aggtgcacat cctctgattg atttgatcga ttgagccttc cagtccttcg
    12961 ggactggaat ttttttgttc ggagaacgaa gataaggcaa gtcaatcaaa acaggagaaa
    13021 aacatggctg attgggtaac aggcaaagtc actaaagtgc agaactggac cgacgccctg
    13081 tttagtctca ccgttcacgc ccccgtgctt ccgtttaccg ccgggcaatt caccaagctt
    13141 ggccttgaaa tcgacggcga acgcgtccag cgcgcctact cctatgttaa ctcgcccgat
    13201 aatcccgatc tggagtttta cctggtcacc gtccccgatg gcaaattaag cccacgattg
    13261 gcggcactga aaccaggcga tgaagtgcag gtggttagcg aagcagctgg cttctttgtt
    13321 ctggatgaag taccagattg cgaaacgcta tggatgctgg caaccggtac agcgattggc
    13381 ccttatttat cgattctgca actaggcaaa gatttagatc gcttcaaaaa tctggtcctg
    13441 gttcacgccg cacgttatgc cgccgactta agctatttgc cactgatgca agaactggaa
    13501 aaacgctacg aaggcaaact gcgcattcag acggtggtca gtcgggaaac ggcagcgggg
    13561 tcgctcaccg gacggatacc ggcattaatt gaaagtgggg aactggaaag cgcgattggc
    13621 ctgccgatga ataaagaaac cagccatgtg atgctgtgcg gcaatccaca gatggtgcgc
    13681 gatacacaac agttgctgaa agagacccgg cagatgacga aacatttacg tcgccgaccg
    13741 ggccatatga cagcggagca ttactggtaa gcggttactt atcgataaac ggcacgatga
    13801 gcaaatccgc actcatctta ttgatcatcc cgcgatatgc tggcatcaaa cggttgataa
    13861 atgagtgatg atgaccacag acaaggaggt cgcactgctc tttttgcata atttccagca
    13921 gtgtttccgg catttctccg cgttcaatac gcagttttgt cttcggccat tgaatatttt
    13981 tcgtcagttt atacagcttg ttatccgact tattcttcaa caattgaaga atatcttctg
    14041 ttgcagggaa gtagataccc ggatacaact cgcttaagcc atcatcaata tgaattaacg
    14101 tcaggtgagc gtcattatgt ctggcgagct ccagagcttt attcaccagt aaggcatctt
    14161 cttcattccc ggaaattgcc acgccaatgt gtttataagc catgtttaac tccttctaaa
    14221 gcaactccat caagctaacg aacgcagtga taactcaaaa ataatcatct cggcctggca
    14281 tgagaaagtg aaggccgcat caagctcaac ttgcccctcc agatccttaa tcttgtaggc
    14341 cacgctggcc ccttcatctg cagaggatgc agcggcggca agctctttca gtttggtcat
    14401 aaaagactct gcttcttcgc gggtggcaaa aaagcgcgaa aacttactgg tacagttgtc
    14461 gttatcaatc accgtaccga tatcaatcgc acatccttta gtactgcatt tatctacgac
    14521 atctttcata gggcacctct gtatattcgc ctctctgtcg attacgactt aagaataatg
    14581 cgccgttaag ggaagaacaa acaagtaatg atcttatgga ttaccatttt ttttgatatt
    14641 gcttaaggtg aagagttcag aaggattttc cgggtattgt catttgcatc gtggaaataa
    14701 caatcccgga aaaaaatagc agtaagagat atattaaagg ttaattactt gatttattgt
    14761 cggctttata cttcacatcc tgagtatctt taccatattt attttcgcct tgtgtgccaa
    14821 caaacgcacc aagatcgata agcatcatca ccagaatcaa cgtcgggaca aaacacccca
    14881 ccgcccattg ccagacaccc ggtaaaatcg cccagttacc cgccagcagc atccacgcca
    14941 caatcatcag aaatgcccat gcgccggaac gcccgcgatc atgcaagcgc ttaacagtta
    15001 ctgccgctgt tggccaaagc aagcacacaa ggcaaaacgc cgcggtctga atatcgagta
    15061 aatttttacc cgccagtgag aaaagcacca gcatgcctgc gaaccacagg cctatccaaa
    15121 tccagaaatc acggcgtcca atacgccctt taaatgagaa taaccattgc tgtatggtca
    15181 tgtaagttcc ttgatggttg tcttttccag gattctaccc ttttgacaag ggcgacagat
    15241 atcgttttaa tcggagccag tcataacaaa aggtactgtc aatgaagcca gggtgtacgc
    15301 tgttttttct cttatgttct gcattaaccg ttacaacaac ggcgcatgca caaacaccag
    15361 atacggcaac gaccgcgcct tatctgctgg ctggagcccc tactttcgat ctctccatca
    15421 gccagtttcg agaagacttt aacagccaga atcctagcct gccactgaac gaatttcgtg
    15481 ccatcgacag cagtcccgac aaagccaatc tcactcgtgc tgcaagtaaa attaacgaga
    15541 acttgtatgc ttctacagcg ctggagcgcg gtaccttaaa aatcaaaagc attcaaatga
    15601 cctggctacc catccagggg ccagagcaaa aagcagcgaa agcgaaagct caggaataca
    15661 tggcagcagt gatccgcaca ctcaccccat taatgaccaa aacacaaagc cagaaaaaac
    15721 tgcagtcgct gctaacggcg gggaaaaaca aacgttatta caccgagaca gaaggtgcac
    15781 tgcgttatgt tgtcgcggac aacggcgaaa aggggctgac cttcgctgtt gaaccgatta
    15841 agctggcgct atctgaatcg cttgaaggtt tgaataaatg acaaaaagca aagcctttgt
    15901 gccgatgaat ctctatactg tttcacagac ctgctgccct gcggggcggc catcttcctt
    15961 tattcgctta taagcgtgga gaattaaaat gcgacatcct ttagtgatgg gtaactggaa
    16021 actgaacggc agccgccaca tggttcacga gctggtttct aacctgcgta aagagctggc
    16081 aggtgttgct ggctgtgcgg ttgcaatcgc accaccggaa atgtacatcg atatggcgaa
    16141 gcgcgaagct gaaggcagcc acatcatgct gggtgcgcaa aacgtggacc tgaacctgtc
    16201 cggcgcattc accggtgaaa cctctgctgc tatgctgaaa gacatcggcg cacagtacat
    16261 catcatcggc cactctgaac gtcgtactta ccacaaagag tctgacgaac tgatcgcgaa
    16321 aaaattcgcg gtgctgaaag agcagggtct gactccggtt ctgtgcatcg gtgaaaccga
    16381 agctgaaaac gaagcgggca aaactgaaga agtttgcgca cgtcagatcg acgcggtact
    16441 gaaaactcag ggtgctgcgg cattcgaagg tgcggttatc gcttacgaac ctgtatgggc
    16501 aatcggtact ggcaaatctg caactccggc tcaggcacag gctgttcaca aattcatccg
    16561 tgaccacatc gctaaagttg acgctaacat cgctgaacaa gtgatcattc agtacggcgg
    16621 ctctgtaaac gcgtctaacg ctgcagaact gtttgctcag ccagacatcg acggcgcgct
    16681 ggttggcggt gcgtctctga aagctgacgc tttcgcagta atcgttaaag ctgcagaagc
    16741 ggctaaacag gcttaagtct gacaggtgcc ggatttcata tccggcactt actttcctta
    16801 actcttcgcc ttaacgcaaa atctcacact gatgatcctg aatttcctcg gctgaagcac
    16861 ggttaagcgt cagtagattt cgttgtgtcg ccagcaatac aaatgagtta tcactctgcc
    16921 gtaccatcgc cagcccgtag cttcccatat gttcccgcgc ctcaggtact tcttctgcca
    16981 gcatcataaa tgggctgcgt tgtaccagtt cgctttccgt tacccgacgc gccaggtatt
    17041 catgcccgcg caaaccacct ggcagtggca accagcggct gctgatgttc gccagattgt
    17101 tatccagttg ttcgcgcaca tcaggacgaa tacaagagat atgaatatga aaatggtttt
    17161 gcgtacgccc ggtgcgggag ttgatcgcca aagaaaccgc gcgatcggga accggctggc
    17221 cgtacttttt gctcataaaa tcacgcgcct gccaggccaa ccaaaagaag ttcggcgttg
    17281 aaggatcggt caacaaagga ctttcagtac cgttaatacg atacgttggc atcaacagat
    17341 attgcagtgg gccattaaga tcttttaaaa ccacgtatcc ggcattgggt ttgacttccg
    17401 cacatggcga aggattttga ttttgctgct gattgggcaa acattcctca aggacaatct
    17461 tacgtaatgt atccgactct tcaccggtta atttccagta accaataccg gcagccacaa
    17521 cggcgataac tatcatcacc aaaaaaagaa gacccgcttt tttcatcttt ttttccctgt
    17581 acctcaaaga gatgcaaggg taacgcaaaa tcgtgacaaa taaaaaaccc ggtcgcgaga
    17641 aaccaccggg tttgataatt atcctgggga aatcagcgtt tgctgatctg atcgaacgta
    17701 ccgccgttag caaaatgctc tttttgcgct ttcgtccagc cgccgaactc ttcatcaatg
    17761 gtgaataact tcagctttgg aaacgcattt tcgtactttt tcgctacttc agcgtcgcgc
    17821 ggacggtagt agtttttcgc ggcaatttcc tgaccttctg gcgagtagag atatttcagg
    17881 taggcttccg ccacctcttt ggtgcctttt ttctcgacca ctttatcgac caccgacacg
    17941 gttggctctg cgaggataga ctcactcggc gtgacgattt cgaatttatc tttccccagt
    18001 tcattcgctg ccagcagagc ttcgttttcc caggcgatca gtacatcgcc aatcccgcgc
    18061 tcgacaaagg tgttagtgga gccgcgcgcg ccagaatcca gaacttcgac gtttttatac
    18121 agtgcccgaa caaaatcctg tgcttttgcc tgatcgttgt tgttgtgatg cagcgcgtag
    18181 ccccaggcag ccaggtagtt ccagcgtgcg ccaccagagc ttttcggatt aggcgtgatc
    18241 accgaaacac ccggtttaat cagatcgttc cagtcatgga tctgcttcgg attgccctta
    18301 cgcaccagga aaacaatggt ggaagtgtac ggtgcggagt tatccggcag acgtttgatc
    18361 cactctttat caatccgccc gcgttccgca attgcgtcca cgtcataggc cagagccagc
    18421 gtgacaacat cagcttcaat accgttgatt accgacgtcg cttgtttacc tgaaccaccg
    18481 tgtgactgac gcatcaccac gttatcacca gtttgctgtt tccagtgggc gctgaatgcc
    18541 ttgttgtact gttcgtacaa ttcgcgcgtt ggatcatatg aaacgttaag aagctgaata
    18601 tcctttgcca taacgctggt tgccgccagc aaaaatgtta accctacgcc ccacttgttc
    18661 atcgcccgac tctcttatgt tgtgttgtga tgagcaaagc gtgccagaag gttaaccaaa
    18721 cattaaagaa taaaaaaaga ttggctataa cttgcgggta tatgttgagg gattaaaaag
    18781 gcggaagaaa tccgcctcat attgctgaca aagtgcgctt tgtccatgcc ggatgcggcg
    18841 cgaacgcctt atccggccta caaaagtttg caaattcaat aaattgcaga attcatgtag
    18901 gcctgataag cgaagcgcat caggcatttt tgcttctgtc atcggtttca ggctaaagga
    18961 atctgccttt ttccgaaatc attaatacag ttttttcgcg cagtccagcc agtcaccttt
    19021 gaacggacgc ttcatgtttt cgatagcgtc gatgatgtcg tggtgaacca gctgttcgtt
    19081 ctggatacct acacaacgac cgccgtaacc tgccagcagc agatcgatag cgtaagcgcc
    19141 catacgggaa gccagaatac ggtcgtaagg caccggagaa ccaccgcgct ggatgtggcc
    19201 cagcacagtt gcgcgggttt cacgacctgt ttctttctcg atgaaatgcg ccagttcgtc
    19261 aacatcacac atatgttcgg taatcgccac gatcgcgtgt tttttacctt tcgcgatacc
    19321 cgctttgatt tcgtttacca ggtcttcacg gctgaattca acttccggaa ccacaacgaa
    19381 ttcacagcca ccggcaatgg ccgcagccaa cgtcagatcg ccacaataac ggcccatcac
    19441 ttccaccacg gaaatacgct ggtgagaaga agaggtgtca cgcagacggt cgatcgcttc
    19501 tacaacggtg ctcagcgcag tgaagaaacc gatagtgtag tcagtgcctt tgatgtcgtt
    19561 gtcgatagtg cccggcagac cgatgcacgg gaagcccatt tcggtcagac gcattgcacc
    19621 catgtaggaa ccgtcaccgc cgataaccac cagcgcgtcg ataccacgtt ttttcaggtt
    19681 ttcgatagcc acggcgcgga tgttctcgtc gcggaattcc gggaaacgcg cagaaccgag
    19741 gaacgtaccg ccacggttga tcatgtcaga cacgctgtaa cggtctagct gtaccatacg
    19801 gtcttcatac agacccagat agccgtcata aatacccatt acttccagac cttctgtcag
    19861 cgcagaacga acaaccccgc gaattgcggc gttcatgcct ggcgcatcac cgccgcttgt
    19921 caacacaccg attttcttaa tcatgactac ctctgaactt tggaatgcaa aatgaaatct
    19981 gttgccggaa gtcttcttgc acatcgaagt gatccaacga atgtgcaaat agtataacaa
    20041 tcacttcctg ctgaattgat tcaggtcagg ccaaatggcg gtattttata cacaaaatgc
    20101 gggtctggct ctcttttata ctgattatga aagcatagac cgtttaccct ccctgggtac
    20161 gacggaacag gggtcctgat ggataattac atccgatccc ggaaaacgcc gtaaaatagc
    20221 ctgctctacc tgatccgcca ccatatgtgc ctgaaccaaa ggcagagagt cttccatttc
    20281 caaatgaatc tgaataaagc gggtcggccc tgactgccgc gtgcgaagat cgtgagcgcc
    20341 gctaacaccc ggccaggaag tcacgatatc aataatttct tgccgttcct catcaggcaa
    20401 tgcgcgatcc agtaatgact gtaccgcctc atatcccatg cgtaacgcgc tatataaaat
    20461 atagatgccg attcccaatg caaacagagc atcggcgcga tgccagccgt accaggacaa
    20521 ccccagcgcc agcagaattg cgccgttcat cataacatca gactggtaat gtagcatatc
    20581 agcccgcacc gcctggcttt gcgtccggcg caccacccaa cgctgaaacg agacaaggat
    20641 aatcgtacaa attagcgcca caattgtcac gataaccccg acgcctggat ctatcatcgg
    20701 tgttggagat atcagatgtt gaatacccgt caaaaacagg aatagtgccg aaccggagat
    20761 aaacatactt tgcgccagcg ccgcgaggga ctctgcttta ccgtgaccaa acgagtgatt
    20821 atcgtcggca ggttgcaggg aatatcgcac caccagtaaa ttcgtcaacg acgcgccgat
    20881 atccaccagc gaatccacca gcgcggcgag aatactcacc gacccggtat accaccatgc
    20941 aaaaatttta atcagcaata gcaacgaagc catcgccgtc gcagcaatcg ccgcccgact
    21001 gaccagccgt ccataagatt gattcataaa tactcccgct atcaactgac gctagtataa
    21061 cggaagcaaa tcatctgcaa tgcattaagc agcaggcaaa ttgaggataa aaaaaacccc
    21121 acatcatgtg ggggaagaca gggatggtgt ctatggcaag gaaaacaggg tttactactg
    21181 ggaacgtgag ttgctactac tcaatagctt caacgatgaa cttttttgcc attgcgtcac
    21241 gtcacgcaac tgctccattc gttgttgatg tttctcgttt aaaaccgctt gctgctccgg
    21301 cgttaacagg cgatacattt ggttgcggac ttttgccatc tcaacctgac gagcaatttg
    21361 ctcattcgcc attttttctg cctgtgcgcg cacagcgttt tcatcaaaat tttctgcggt
    21421 gacaaggcga tgcattgtct ccagttcgct aacattaaca ggaggctgtt cgtgccgggc
    21481 ctgttgcata agatctcgca tctgctgacg ctgatgttcg gttaaactta tgccgtcgaa
    21541 catatggctc tgcgtactgc gctgcgtaag ttcttcaccc ggatgccagt tatcgcctga
    21601 accgacttca gcagcgtggc ttaatgaact gactgccagc gttgaagcca tgacggcagc
    21661 ggtaactatg cgcatcattt gctcccaaaa tctttctgtc gcgattcaac gatagagagt
    21721 ttacgattca ggctgcaaac atgcgtcagg gggtgtaaaa caacgtaaag tcatggatta
    21781 gcgacgtctg atgacgtaat ttctgcctcg gaggtattta aacaatgaat aaaatcctgt
    21841 tagttgatga tgaccgagag ctgacttccc tattaaagga gctgctcgag atggaaggct
    21901 tcaacgtgat tgttgcccac gatggggaac aggcgcttga tcttctggac gacagcattg
    21961 atttactttt gcttgacgta atgatgccga agaaaaatgg tatcgacaca ttaaaagcac
    22021 ttcgccagac acaccagacg cctgtcatta tgttgacggc gcgcggcagt gaacttgatc
    22081 gcgttctcgg ccttgagctg ggcgcagatg actatctccc gaaaccgttt aatgatcgtg
    22141 agctggtggc acgtattcgc gcgatcctgc gccgttcgca ctggagcgag caacagcaaa
    22201 acaacgacaa cggttcaccg acactggaag ttgatgcctt agtgctgaat ccaggccgtc
    22261 aggaagccag cttcgacggg caaacgctgg agttaaccgg tactgagttt accctgctct
    22321 atttgctggc acagcatctg ggtcaggtgg tttcccgtga acatttaagc caggaagtgt
    22381 tgggcaaacg cctgacgcct ttcgaccgcg ctattgatat gcacatttcc aacctgcgtc
    22441 gtaaactgcc ggatcgtaaa gatggtcacc cgtggtttaa aaccttgcgt ggtcgcggct
    22501 atctgatggt ttctgcttca tgataggcag cttaaccgcg cgcatcttcg ccatcttctg
    22561 gctgacgctg gcgctggtgt tgatgttggt tttgatgtta cccaagctcg attcacgcca
    22621 gatgaccgag cttctggata gcgaacagcg tcaggggctg atgattgagc agcatgtcga
    22681 agcggagctg gcgaacgatc cgcccaacga tttaatgtgg tggcggcgtc tgttccgggc
    22741 gattgataag tgggcaccgc caggacagcg tttgttattg gtgaccaccg aaggccgcgt
    22801 gatcggcgct gaacgcagcg aaatgcagat cattcgtaac tttattggtc aggccgataa
    22861 cgccgatcat ccgcagaaga aaaagtatgg ccgcgtggaa ctggtcggtc cgttctccgt
    22921 gcgtgatggc gaagataatt accaacttta tctgattcgt ccggccagca gttctcaatc
    22981 cgatttcatt aacttactgt ttgaccgccc gctattactg ctgattgtca ccatgttggt
    23041 cagtacgccg ctgctgttgt ggttggcctg gagtctggca aaaccggcgc gtaagctgaa
    23101 aaacgctgcc gatgaagttg cccagggaaa cttacgccag cacccggaac tggaagcggg
    23161 gccacaggaa ttccttgccg caggtgccag ttttaaccag atggtcaccg cgctggagcg
    23221 catgatgacc tctcagcagc gtctgctttc tgatatctct cacgagctgc gcaccccgct
    23281 gacgcgtctg caactgggta cggcattact gcgccgtcgt agcggtgaaa gcaaggaact
    23341 ggagcgtatt gaaaccgaag cgcaacgtct ggacagcatg atcaacgatc tgttggtgat
    23401 gtcacgtaat cagcaaaaaa acgcgctggt tagcgaaacc atcaaagcca accagttgtg
    23461 gagtgaagtg ctggataacg cggcgttcga agccgagcaa atgggcaagt cgttgacagt
    23521 taacttcccg cctgggccgt ggccgctgta cggcaatccg aacgccctgg aaagtgcgct
    23581 ggaaaacatt gttcgtaatg ctctgcgtta ttcccatacg aagattgaag tgggctttgc
    23641 ggtagataaa gacggtatca ccattacggt ggacgacgat ggtcctggcg ttagcccgga
    23701 agatcgcgaa cagattttcc gtccgttcta tcggaccgat gaagcacgcg atcgtgaatc
    23761 tggcggtaca ggattggggc tggcgattgt tgaaaccgcc attcagcagc atcgtggctg
    23821 ggtgaaggca gaagacagcc cgctgggcgg tttacggctg gtgatttggt tgccgctgta
    23881 taagcggagt taaactccgc atttgtaggc aggataaggc gtttacgccg catccggcat
    23941 ttgagcagga tgcctgatgc gacgctgata gcgtcttatc aggcctacac tccgggggtt
    24001 attttcccca caaccggcgg gaaaaatctt cgatcttgcc gctcagtcgg cgcttttgca
    24061 tcgtccgcgt ccagcttttc gataacccgg cggcggagag taaacggtga tactgatcgt
    24121 catcaaacgg catatgccat gcgatggcgg cagcctcctg cacggtcaca tcgctgacac
    24181 gggaaaccaa ctccagcggc gcgtccgcag acactttccc tggcgctatc acgctataca
    24241 accaccccac cttacctgtg ttttgcatca actgcgctat atcgctgata tcaaaatggt
    24301 aattgagttt atagcaaggc gagcgcggct ggctgacctg aattaatgcc tctccccagc
    24361 ggaaaatatc gcccatataa acattacttt ccgtcaggcc gtcggttgag aggttttcac
    24421 caaacgcagg cgcaacaaac aactccgcct gttccggaaa ttcccgcgcc cagtagagat
    24481 aatgctcacg aggataatga cacagcgctc tgtctggccc accatgaacc tttttctccg
    24541 cctgctcgtc accttccagc cccagctccg tcagcatcaa ctcaccatca acctggattt
    24601 tggcaattgc gctgggtttg ccttcgggat aagcctgaat cttgcctgtg tatacatcaa
    24661 ccggatatcg catctgttcc ctctccacga gaaatttccc cattagacca tatttatttt
    24721 atgtcaggcg tgctgttttc gcggtaagta tccaggcagg aactcaatag caaaccggac
    24781 gaacgttagt tcatccggct gtggggatta aggaagcagg tttatttcac cgtacctaaa
    24841 atttcgattt tcgctgctct ggctttgact ttacgtgacc agatagaggt aagaattggc
    24901 accagaatcg aagtcacaat gaccgccgtc gctaccagcg aagttgctgc cggagccatc
    24961 ggtttaaacg caggcaccat ttctgcaatc agcataggtg tcgctaccgc ggcccctgcg
    25021 gaactggaag cggcaattcc ggcagtgcca tcgccaccgc caatcaattt atcggcgata
    25081 atcaacggaa caccggtcac gataattact gccacaccca acaggatccc cagcaaacca
    25141 gtctgggcaa tcacagtcaa atcaatggta ttgcccagcg cgaaggcaaa gaatggaatc
    25201 agcgtttgca ccgctttgct gaaaaattct cgtaattcag ggtcaaggtt ccccagggca
    25261 aagcccacca ggaacggtaa tactgcgccg acgaaaacat gcggttcaaa cgaggcaatc
    25321 cctgcagtgc ccagaataat catcgtcatg agcggcccgg actccaacga catcaacaca
    25381 aatgccccag cttcttcttt tgtgccgtac tgctgcatga tggaagcgta aagtccgcca
    25441 ttggtcatat ccatcgccgc caccagcgcc agcgttgaaa gtccggcaaa gaatccaact
    25501 tcaacaccat gttccggaat aatgcgcgag gcaattgccg caaccaccca cgcgacggca
    25561 atttttgtta ccaccagcgt accggattta cgcaataccg ttcccgtcgc gcttaatttt
    25621 attgacgccc ccatgcaaaa aaaccacacc gccagaatgg acaccgtacc ggtaatcatc
    25681 ccgttggtga atgatccaaa atatttcccc gcccccggcg agaaggtgtg gcacagtgcg
    25741 ccaaggaata gcgggacgag catcatcccc ccccgggatt ttctcaatcg agcgttttat
    25801 ctgcatttcc atcacctgtc ggcatatttt taagggctga tgcgtaattc ctcaatggag
    25861 catcagtgtt gatggaaacg aagatagaca ttcatttaat caataaaagt gatcaaaacc
    25921 acatcaattg aaacgctgtt ttatttttat cggatcattg tttttatttt gaaattgatc
    25981 acaaaaaaac caccgccgtt ggcgatggtt cattttttaa gctgatatgc ggcgtaaacg
    26041 cctcattgca gcaggcggca aatgattatt ttttcgccgc gaaacgtgcc gctgcttcat
    26101 cccagttcac cacgttccag aactctttga tgtagtccgg acggcggttc tggaatttca
    26161 ggtagtaagc atgttcccac acatccaggc ccagaatcgg gaagccggaa gcgccagaaa
    26221 tagcttcacc catcagcggg gaatcctggt tagcagtaga aaccaccgcc agtttatcgc
    26281 ctttcagcac cagccatgcc cagccggaac caaagcggga agctgccgct ttctcaaatt
    26341 ctgctttgaa gttatcaacg gagccgaagt cacgttcgat agccgctttc aggtcaccct
    26401 gtaaggtggt gccttttttc agacctttcc agaacaggct gtggttagcg tgaccgccag
    26461 cgttgttgcg cagtacggtt ttcttgtctg ctggcagctg gtccagtttg gtgatcagct
    26521 cttcaaccgg caggttggca aattctggca ggctttccag cgccgcgttg gcgttgttga
    26581 cgtaggtctg atggtgtttg gtgtggtgga tttccatggt ctgcttatcg aagtgcggtt
    26641 ccagggcatc gtaagcatac ggcagggatg gcagggtata gctcatattc atctccagta
    26701 ttgtcgggcg gccgattgtt aatgcgcgta agcagttggt tcattatagt taattaaatg
    26761 atattgaaaa tgattatcaa tgccgtactt ttcgtaaggg tatggttttg caggaaaatt
    26821 cccgagatgt gaagcaaatc acccacttaa tgccgtgatt gccagtaaat cgacaacggc
    26881 ggcaacaggc gaaaggttaa tcgacagcac gatttttaca ctcatctcgt cggagatgtg
    26941 acgcgacgaa aaatgatgag gataagaaga tgagtaacgc gattacgatg gggatatttt
    27001 ggcatttgat cggcgcggcc agtgcagcct gtttttacgc tccgttcaaa aaagtaaaaa
    27061 aatggtcatg ggaaaccatg tggtcagttg gtgggattgt ttcgtggatt attctgccgt
    27121 gggccatcag cgccctgtta ctgccgaatt tctgggcgta ttacagctcg tttagtctct
    27181 ctacgctgct gcctgttttt ctgttcggcg ctatgtgggg gatcggtaat atcaactacg
    27241 gcctgaccat gcgttatctc ggcatgtcga tgggaattgg catcgccatt ggcattacgt
    27301 tgattgtcgg tacgctgatg acgccaatta tcaacggcaa tttcgatgtt ctgcttaata
    27361 ccgaaggcgg acgcatgacg ttgctcggcg ttctggtggc gctgattggt gtagggattg
    27421 tgactcgcgc cgggcagttg aaagagcgca aaatgggcat taaagccgaa gagttcaacc
    27481 tgaaaaaagg gctggtgctg gcggtgatgt gcggcatttt ctctgccggt atgtcttttg
    27541 cgatgaacgc cgcaaaaccg atgcatgaag ccgctgccgc actgggcgtc gatccactgt
    27601 atgtcgctct gccaagctat gtcatcatca tgggcggcgg cgcgatcatc aacctcggtt
    27661 tctgcttcat tcgtctggca aaagtgaagg atttgtcgct aaaagccgac ttctcgctgg
    27721 caaaaccgct gatcattcac aatgtgttac tctcagcact gggcgggttg atgtggtatc
    27781 tgcaattctt tttctatgcc tggggccacg cccgcattcc ggcgcagtat gactacatca
    27841 gttggatgct gcatatgagt ttctatgtat tgtgcggcgg tatcgtcggg ctggtgctga
    27901 aagagtggaa caatgcaggt cgccgtccgg taacggtgtt gagcctcggt tgtgtggtga
    27961 ttattgtcgc cgccaacatc gtcggcatcg gcatggcgaa ttaatctttc tgcgaattga
    28021 gatgacgcca ctggctgggc gtcatcccgg tttcccgggt aaacaccacc gaaaaatagt
    28081 tactatcttc aaagccacat tcggtcgaaa tatcactgat taacaggcgg ctatgctgga
    28141 gaagatattg cgcatgacac actctgacct gccgcagata ttgattgatg gtcattccag
    28201 tctgctggcg aaattgctga cgcaaaacgc gctcactgca cgatgcctca tcacaaaatt
    28261 tatccagcgc aaagggactt ttcaggctag ccgccagccg ggtaatcagc ttatccagca
    28321 acgtttcgct ggatgttggc ggcaacgaat cactggtgta acgatggcga ttcagcaaca
    28381 tcaccaactg cccgaacagc aactcagcca tttcgttagc aaacgacaca tgctgactac
    28441 tttcatgctc aagctgaccg ataacctgcc gcgcctgcgc catccccacg ctacctaagc
    28501 gccagtgtgg ttgccctgcg ctggcgctaa atcccggaat cgctccctgc cagtcaagat
    28561 tcagcttcag ccgctccggg caataaataa tattctgcaa aaccagatcg ttaacggaag
    28621 cgtaggagtg tttatcgtca gcatgaatgt aaaagagatc gccacgggta atgcgataag
    28681 ggcgatcgtt gagtacatgc agaccattac cgcgccagac aatcaccagc tcacaaaaat
    28741 catgtgtatg ttcggcaaaa acatcttgcg gataacggtc agccacagcg actgcctgct
    28801 ggtcgctggc aaaaaaatca tctttgagaa gttttaactg atgcgccacc gtggctacct
    28861 cggccagaga acgaagttga ttattcgcaa tatggcgtac aaatacgttg agaagattcg
    28921 cgttattgca gaaagccatc ccgtccctgg cgaatatcac gcggtgacca gttaaactct
    28981 cggcgaaaaa gcgtcgaaaa gtggttactg tcgctgaatc cgcagcgata ggcgatgtca
    29041 gtaacgctgg cctcgctgtg acgtagcaga tgtcgggcct tcatcagtcg caggcggttc
    29101 aggtaacgct gaggcgtcag tcccgtttgc tgcttaagct gccgatgtag cgtacgcagt
    29161 gaaagagaaa attgatccgc cacggcatcc caattcacct catcggcaaa atggtcctcc
    29221 agccaggcca gaagcaagtt gagacgtgat gcgctgtttt ccaggttctc ctgcaaactg
    29281 cttttacgca gcaagagcag taattgcata aacaagatct cgcgactggc ggtcgagggt
    29341 aaatcatttt ccccttcctg ctgttccatc tgtgcaacca gctgtcgcac ctgctgcaat
    29401 acgctgtggt taacgcgcca gtgagacgga tactgcccat ccagttcttg tggcagcaac
    29461 tgattcagcc cggcgagaaa ctgaaatcga tccggcgagc gatacagcac attggtcaga
    29521 cacagattat cggtatgttc atacagatgc cgatcatgat cgcgtacgaa acagaccgtg
    29581 ccaccggtga tggtataggg ctgcccatta aacacatgaa tacccgtgcc atgttcgaca
    29641 atcacaattt catgaaaatc atgatgatgt tcaggaaaat ccgcctgcgg gagccggggt
    29701 tctatcgcca cggacgcgtt accagacgga aaaaaatcca cactatgtaa tacggtcata
    29761 ctggcctcct gatgtcgtca acacggcgaa atagtaatca cgaggtcagg ttcttacctt
    29821 aaattttcga cggaaaacca cgtaaaaaac gtcgattttt caagatacag cgtgaatttt
    29881 caggaaatgc ggtgagcatc acatcaccac aatgaagcaa attgtgaaca tcatcacgtt
    29941 catctttccc tggttgccaa tggcccattt tcctgtcagt aacgagaagg tcacgaattc
    30001 aggcgctttt tagactggtc gtaatgaaat tcagcaggat cacattatga cctttcgcaa
    30061 ttgtgtcgcc gtcgatctcg gcgcatccag tgggcgcgtg atgctggcgc gttacgagcg
    30121 tgaatgccgc agcctgacgc tgcgcgaaat ccatcgtttt aacaatggcc tgcatagcca
    30181 gaacggttat gtcacctgga atgtggatag cctggaaagt gccattcgcc ttggattaaa
    30241 caaggtgtgc gaggaaggga ttcgtatcga tagcattggg attgatacct ggggcgtgga
    30301 ctttgtgctg ctcgaccaac agggtcagcg tgtggacctg cccgttgctt atcgcgatag
    30361 ccgctccaat ggcctaatgg cgcaggcaca gcaacaactc ggcaaacgcg atatttatca
    30421 acgtagcggc atccagtttc tgcccttcaa tacgctttat caactgcgtg cgctgacgga
    30481 gcaacaacct gaacttattc cacacattgc tcacgctctg ctgatgccgg attacttcag
    30541 ctatcgcctg accggcaaga tgaactggga atataccaat gccaccacca cacaactggt
    30601 caatatcaat agcgacgact gggacgagtc gctactggcg tggagcgggg ccaacaaagc
    30661 ctggtttggt cgcccgacgc atccgggtaa tgtcattggg cactggattt gcccgcaggg
    30721 taatgagatt ccggtggtcg ccgttgccag ccatgatacc gccagcgcgg ttatcgcctc
    30781 gccgttaaac ggttcacgcg ctgcttatct ctcttctggc acctggtcat tgatgggctt
    30841 cgaaagccag acgccattta ccaatgacac ggcgctggca gccaacataa ccaatgaagg
    30901 cggggcggaa ggtcgctatc gggtgctgaa aaatattatg ggcttatggc tgcttcagcg
    30961 agtgcttcag gagcggcaaa tcaacgatct cccggcgctt atcgccgcga cacaggcact
    31021 tccggcctgc cgcttcatca tcaatcccaa tgacgatcgc tttattaatc ctgaggcgat
    31081 gtgcagcgaa attcaggctg cgtgtcggga aacggcgcaa ccgatcccgg aaagtgatgc
    31141 tgaactggcg cagctacgcg gtgaagattt ctcgcaactg catattgtcg gcggcggctg
    31201 ccagaacacg ctgctcaacc agctatgtgc cgatgcctgc ggtattcggg tgatcgccgg
    31261 gcctgttgaa gcctcgacgc tcggcaatat cggcatccag ttaatgacgc tggatgaact
    31321 caacaatgtg gatgatttcc gtcaggtcgt cagcaccacc gcgaatctga ccacctttac
    31381 ccctaatcct gacagtgaaa ttgcccacta tgtggcgcag cttcactcta cacgacagac
    31441 aaaggagctt tgcgcatgac cactcaactg gaacaggcct gggagctggc gaaacagcgt
    31501 ttcgcggcgg tggggattga tgtcgaggag gcgctgcgcc aacttgatcg tttacccgtt
    31561 tcaatgcact gctggcaggg cgatgatgtt tccggttttg aaaacccgga aggttcgctg
    31621 accgggggga ttcaggccac aggcaattat ccgggcaaag cgcgtaatgc cagtgagcta
    31681 cgtgccgatc tggaacaggc tatgcggctg attccggggc cgaaacggct taatttacat
    31741 gccatctatc tggaatcaga tacgccagtc tcgcgcgacc agatcaaacc agagcacttc
    31801 aaaaactggg gtgaatgggc gaaagccaat cagctcggtc tggattttaa cccctcctgc
    31861 ttttcgcatc cgctaagcgc cgatggcttt acgctctcgc atcccgacga cagcattcgc
    31921 cagttctgga ttgatcactg caaagccagc cgtcgcgttt cggcctattt tggcgagcaa
    31981 ctcggcacac catcggtgat gaacatctgg atcccggatg gtatgaaaga tatcaccgtt
    32041 gaccgtctcg ccccgcgtca gcgtctgctg gcagcactgg atgaggtgat cagcaagaag
    32101 ctaaaccctg cgcaccatat cgacgccgtt gagagcaaat tgtttggcat tggcgcagag
    32161 agctacacgg ttggctccaa tgagttttac atggggtatg ccaccagccg ccagactgcg
    32221 ctgtgcctag acgccgggca cttccacccg actgaagtga tttccgacaa gatttccgcc
    32281 gccatgctgt atgtgccgca gttgctgctg cacgtcagcc gtccggttcg ctgggactgc
    32341 gatcacgtag tgctgctgga tgatgaaacc caggcaattg ccagtgagat tgtgcgtcac
    32401 gatctgtttg accgggtgca tatcggcctt gacttcttcg atgcctctat caaccacatt
    32461 gccgcgtggg tcattggtac acgcaatatg aaaaaagccc tgctgcgtgc gttgctggaa
    32521 cctaccgctg agctgcgcaa gctggaagcg gcgggcgatt acactgcgcg tctggcactg
    32581 ctggaagagc agaaatcgtt gccgtggcag gcggtctggg aaatgtattg ccaacgtcac
    32641 gatacgccag caggtagcga atggctggag agcgtgcggg cttatgaaaa agaaattttg
    32701 agccagcgtg ggtaaacact gccggatgcg gcgcgagcgc cttatccggc ctacgggtcg
    32761 gcaacagttg taggcctgat aagacgcgac agcgtcgcat caggcattga ttgccggatg
    32821 cggcacgagt gccttatccg gcctacaggt cggcaatagt tgtaggcctg ataagacgcg
    32881 acagcgtcgc atcaggcatt gattgccgga tgcggcacga gcgccttatc cggcctacgg
    32941 gtcgtgcatc tgacaacacc gaatttacag gaacacagaa catgcaaaac attacccagt
    33001 cctggtttgt ccagggaatg atcaaagcca ccaccgatgc ctggctgaaa ggctgggacg
    33061 aacgcaacgg cggcaacctg acgctgcgcc tggatgacgc cgatatcgcg ccttataaag
    33121 acaacgtcca tgcacaaccg cgctatatcc cgctcagcca gcccatgcct ttactggcaa
    33181 atacaccgtt tattgtcacc ggctccggca aattcttccg taacgtccag ctcgatcctg
    33241 cagctaactt aggcgtcgta aaagtcgaca gcgatggcgc gggctaccat attctctggg
    33301 ggttaaccaa cgaagccgtc ccgacatccg aactcccggc gcactttctc tcccactgcg
    33361 agcgcattaa agccaccaac ggtaaagatc gggtgatcat gcactgccac gccaccaacc
    33421 tgatcgccct cacctatgta ctggaaaacg acaccgcggt ctttactcgc caactgtggg
    33481 aaggcagcac cgagtgtctg gtggtattcc cggatggcgt tggcattctg ccgtggatgg
    33541 tgcccggcac ggacgaaatc ggccaggcga ccgcacaaga gatgcaaaaa cattcgctgg
    33601 tgttgtggcc cttccacggc gtcttcggca gcgggtcgac gttggatgaa acattcggtt
    33661 taatcgacac cgcagaaaaa tcagcacaag tattagtgaa ggtttattcg atgggcggca
    33721 tgaaacagac catcagccgt gaagagttga tagcgctcgg caagcgcttc ggcgttacac
    33781 cactagccag tgcgctggcg ctgtaaggag caaacatgat ccgcaaagcc tttgtcatgc
    33841 aggttaaccc cgacgcccac gaagagtatc agcgtcggca taaccccatc tggccggaac
    33901 tggaagcagt gttgaaatct cacggtgcgc ataactacgc catttacctc gacaaagcgc
    33961 gtaatctgct gtttgccacg gtagagattg aatctgaaga acggtggaat gcggtagcca
    34021 gtactgatgt ttgccaacgt tggtggaaat atatgaccga tgttatgccc gctaacccgg
    34081 ataacagccc ggtgagtagc gagctg
//
LOCUS       DAJVSY010000026        33920 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.026, whole genome shotgun sequence.
ACCESSION   DAJVSY010000026 DAJVSY010000000
VERSION     DAJVSY010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 33920)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33920)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33920
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.026"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            1267..2046
                     /gene="ipaJ"
                     /locus_tag="OQQ19_001131"
     CDS             1267..2046
                     /gene="ipaJ"
                     /locus_tag="OQQ19_001131"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858255.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector cysteine
                     protease IpaJ"
                     /protein_id="HCS1802828.1"
                     /translation="MSEQRKPCKRGCIHTGVMLYGVLLQGAIPREYMISHQTDVRVNE
                     NRVNEQGCFLARKQMYDNSCGAASLLCAAKELGVDKIPQYKGSMSEMTRKSSLDLDNR
                     CERDLYLITSGNYNPRIHKDNIADAGYSMPDKIVMATRLLGLNAYVVEESNIFSQVIS
                     FIYPDARDLLIGMGCNIVHQRDVLSSNQRVLEAVAVSFIGVPVGLHWVLCRPDGSYMD
                     PAVGENYSCFSTMELGARRSNSNFIGYTKIGISIVITNEAL"
     gene            complement(2992..3921)
                     /gene="virB"
                     /locus_tag="OQQ19_001132"
     CDS             complement(2992..3921)
                     /gene="virB"
                     /locus_tag="OQQ19_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence regulon transcriptional activator
                     VirB"
                     /protein_id="HCS1802829.1"
                     /translation="MVDLCNDLLSIKEGQKKEFTLHSGNKVSFIKAKIPHKRIQDLTF
                     VNQKTNVRDQESLTEESLADIIKTIKLQQFFPVIGREIDGRIEILDGTRRRASAIYAG
                     ADLEVLYSKEYISTLDARKLANDIQTAKEHSIRELGIGLNFLKVSGMSYKDIAKKENL
                     SRAKVTRAFQAASVPQEIISLFPIASELNFNDYKILFNYYKGLEKANESLSSTLPILK
                     EEIKDLDTNLPPDIYKKEILNIIKKSKNRKQNPSLKVDSLFISKDKRTYIKRKENKTN
                     RTLIFTLSKINKTVQREIDEAIRDIISRHLSSS"
     gene            complement(4138..4374)
                     /locus_tag="OQQ19_001133"
     CDS             complement(4138..4374)
                     /locus_tag="OQQ19_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HCS1802830.1"
                     /translation="MIKEKILSIVAFCYGIAYSKLSEETKFIEDLSADSLSLIEMLDM
                     ISFEFNLRIDESALEHIITIGDLISVVKNSTKSI"
     gene            complement(4378..6279)
                     /gene="ipaA"
                     /locus_tag="OQQ19_001134"
     CDS             complement(4378..6279)
                     /gene="ipaA"
                     /locus_tag="OQQ19_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector invasin IpaA"
                     /protein_id="HCS1802831.1"
                     /translation="MHNVNNTQAPTFLYKATSPSSTEYSELKSKISDIHSSQTSLKTP
                     ASVSEKENFATSFNQKCLDFLFSSSGKEDVLRSIYSNSMNAYAKSEILEFSNVLYSLV
                     HQNDLNFENEKGLQKIVAQYSELIIKDKLSQDSAFGPWSAKNKKLHQLRQNIEHRLAL
                     LAQQHTSGEALSLGQKLLNTEVSSFIKNNILAELKLSNETVSSLKLDDLVDAQAKLAF
                     DSLRNQRKNTIDSKGFGIGKLSRDLNTVAVFPELLRKVLNDILEDIKDSHPIQDGLPT
                     PPEDMPDGGPTPGANEKTSQPVIHYHINNDNRTYDNRVFDNRVYDNSYHENPENDAQS
                     PTSQTNDLLSRNGNSLLNPQRALVQKVTSVLPHSISDTVQTFANNSALEKVFNHTPDN
                     SDGIGSDLLTTSSQERSTNNSLSRGHRPLNIQNSSTTPPLHPEGVTSSNDNSSDTTKS
                     SASLSHRVASQINKFNSNTDSKVLQTDFLSRNGDTYLTRETIFEASKKVTNSLSNLIS
                     LIGTKSGTQERELQEKSKDITKSTTEHRINNKLKVTDANTINYVTETNADTIDKNHAI
                     YEKAKEVSSALSKVLSKIDDTSAELLTDDISDLKNNNDITAENNNIYKAAKDVTTSLS
                     KVLKNINKD"
     gene            complement(6288..7286)
                     /gene="ipaD"
                     /locus_tag="OQQ19_001135"
     CDS             complement(6288..7286)
                     /gene="ipaD"
                     /locus_tag="OQQ19_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system needle tip complex
                     protein IpaD"
                     /protein_id="HCS1802832.1"
                     /translation="MNITTLTNSISTSSFSPNNTNGSSTETVNSDIKTTTSSHPVSSL
                     TMLNDTLHNIRTTNQALKKDLSQKTLTKTSLEEIALHSSQISMDVNKSAQLLDILSKK
                     EYPINKDARELLHSAPKEAELDGYEMISHRELWDKIAKSINNINEQYLKVYEHAVSSY
                     TQMYQDFSAVLSSLAGWISPGGNDGNSVKLQVKSLKDELTKLKEKYKDKPLYPANNTV
                     SKEQANKWLTELGGTIGKVSEKNGGYVVNINMTPIDNMLKSLNNLGGNGEVVLDNAKY
                     QAWNAGFSAEDETMKNNLQTLVQKYSNANSIFDNLVKVLSSTISSCTDTDKLFLHF"
     gene            complement(7337..8428)
                     /gene="ipaC"
                     /locus_tag="OQQ19_001136"
     CDS             complement(7337..8428)
                     /gene="ipaC"
                     /locus_tag="OQQ19_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858260.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS translocon subunit IpaC"
                     /protein_id="HCS1802833.1"
                     /translation="MEIQNTKSAPILYTDISTKQTQSSSETQKSQNYQQLAAHIPLNV
                     GKNPVLTTTLNDDQLLKLSEQVQHDSEIIARLTDKKMKDLSEMSHTITPENTLDISSL
                     SSNAVSLIISVAVLLSALRTAETRLGSQLSLIAFDATKSAAENIVRQGLAALSSSITG
                     AVTQVGITGIGAKKTHSGISEQKGALRKNLATAQSLEKELAGSKLGLNKQIDTNITSP
                     QTNSSTKILGKNKLAPDNISLSTEHKTSLSSPDISLQDKIDTQRRAYELNTLSAQQKQ
                     NIGRATMETSAVAGNISTSGGRYTSALEEEEQLISQASSKQAEEASQVSKEASQATNQ
                     LIQKLLNIIDNINQSRNSTASQIAGNIRA"
     gene            complement(8448..10190)
                     /gene="ipaB"
                     /locus_tag="OQQ19_001137"
     CDS             complement(8448..10190)
                     /gene="ipaB"
                     /locus_tag="OQQ19_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system translocon subunit
                     IpaB"
                     /protein_id="HCS1802834.1"
                     /translation="MHNVSTTTTGLPLAKILASTELGDNTIQAANDAANKLFSLTIAD
                     LAANKNINTTNAHSTSNILIPELKAPKSLNASSQLTLLIGNLIQILGEKSLTALTNKI
                     TAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQ
                     IQTRLSELAPDSPENKKLRREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLE
                     KEIDSFSAFSNTASAEQLSTQQKSLTGLASVTQLMATFIQLVGKNNEESLKNDLALFQ
                     SLQESRKTEMERKSDEYAAEVRKAEELNRVMGCVGKILGALLTIVSVVAAAFSGGASL
                     ALAAVGLALMVTDAIVQAATGNSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLGVD
                     SKKAKMIGSILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFL
                     KNFSSQLDDLITNAVARLNKFLGAAGDEVISKQIISTHLNQAVLLGESVNSATQAGGN
                     VASAVFQNNASKNLADLTLSKYQVEQLSKYIGDAIEKFGQLQEVIAELLASMSNSQAN
                     RTDVAKAILQQTTA"
     gene            complement(10196..10663)
                     /gene="ipgC"
                     /locus_tag="OQQ19_001138"
     CDS             complement(10196..10663)
                     /gene="ipgC"
                     /locus_tag="OQQ19_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SycD/LcrH family type III secretion system
                     chaperone IpgC"
                     /protein_id="HCS1802835.1"
                     /translation="MSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAY
                     DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN
                     DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQDIKE"
     gene            complement(10721..11347)
                     /gene="ipgB1"
                     /locus_tag="OQQ19_001139"
     CDS             complement(10721..11347)
                     /gene="ipgB1"
                     /locus_tag="OQQ19_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion effector IpgB1"
                     /protein_id="HCS1802836.1"
                     /translation="MQILNKILPQVEFAIPRPSFDSLSHNKLVKKILSVFNLKQRFPQ
                     KNFGCPVNINKIRDSVIDKIKDSNSGNQLFCWMSQERTSYVSSMINRSIDEMAIHNGV
                     VLTSDNKKNIFAAIEKKFPDIKLDEKSAQTSISHTALNEIASSGLRAKILKRYSSDMD
                     LFNTQMKDLTNLVSSSVYDKIFNESTKVLQIEISAEVLKAVYRQSNTN"
     gene            complement(11363..11752)
                     /gene="ipgA"
                     /locus_tag="OQQ19_001140"
     CDS             complement(11363..11752)
                     /gene="ipgA"
                     /locus_tag="OQQ19_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone IpgA"
                     /protein_id="HCS1802837.1"
                     /translation="MCRKLYDKLYEITGAKLDFNDKNQAFILLEEQIPVCITDNDEYI
                     FLTGLLNEHELFTENIINPEHILILNYSLSRDYGSSICLLPDTHQCVLTKKHYKKYLS
                     PDELIESLYEFLFCIKLTIANITSEVN"
     gene            complement(11765..13249)
                     /gene="icsB"
                     /locus_tag="OQQ19_001141"
     CDS             complement(11765..13249)
                     /gene="icsB"
                     /locus_tag="OQQ19_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector IcsB"
                     /protein_id="HCS1802838.1"
                     /translation="MILKISNFIDASNTKGPIRVEDTEHGPILVAQKFNLKDLFFRTL
                     STINAKINSQILNEQLKNYRLANQKSLLLFLKTLASEKSAESAFAAYEAVKNSIQHSF
                     TGKDIKLMLNTAESFHGIGTAKNLERHLVFRCWGNRGITHLGHTSISIKNNLLQEPTH
                     TYLSWYPGGNVTKDTEINYLFEKRSGYSVDTYKQDKLNMISDQTAERLDAGQEVRNLL
                     NSKQDQNNNKKIFFPRANQKKDPYGYWGVSADKVYIPLSGDNKTKDGKISYNLFGLDE
                     TNMSKFICQKKADAFRQLANYKLISKSENCAGMALNVLKAGNSEIYFPLPDVKLVATP
                     NNVYAYANKVRQRIESLNQSYNEIMKYIESDFDLSRLTQLRRSYLKSFNKINLIHTPK
                     TFKPLSISLYKHPTENVSSEDFDAVINACHSYLVKSAPSNMSRVLNELKTGATDKKEV
                     IIEKSIKTIDYYNSLKSPDLGTKLYIHDLLQVNKLLLNNSHSNI"
     gene            13563..15179
                     /locus_tag="OQQ19_001142"
     CDS             13563..15179
                     /locus_tag="OQQ19_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector inositol
                     phosphate phosphatase"
                     /protein_id="HCS1802839.1"
                     /translation="MHITNLGLHQVSFQSGDSYKGAEETGNQKGVSVISYQRVKNGER
                     NKGVEALNRLYLQNQTSLTGKGLLFARDRAAVFYEAIKLAGGDTSKIKAMMEQLDTYK
                     LGEVDKRNINELNKVISEEIRAQLGIKNKKELQSEIKQIFTNYLNNKNWEPINKNINY
                     NGKNYGFQLTPASHMKIGNKNIFVKEYNGKGICCASTRESKHIANMWLSKVVDDEGKE
                     IFSGIRHGVISAYGLKKNSSERAVAARNKAEELASAALYSRQELLSQALSGKTVDLKI
                     VSTSLLTPTSLTGGEESMLKDQVKALKELNSKRGEPTKLLIRNSDGLLQEVKVNLKVV
                     TFNFGVNELALKMGLGWRNVDKLNGESICSLLGDNFLKNGVIGGWAAEAIEKNPPCKN
                     DVIYLANQIKEILNKKLQKNDNGEPYKLSQRMALLAYTIGAVPCWNCKSGKDRTGMQD
                     AEIKREIIRKHETGQFSQLNSKLSSEEKRLFSTILMNSGNMEIQEMNTGVPGNKVMKK
                     LPLSSLELSYAERIGDPKIWNMVKGYSSFV"
     gene            15189..15551
                     /gene="ipgE"
                     /locus_tag="OQQ19_001143"
     CDS             15189..15551
                     /gene="ipgE"
                     /locus_tag="OQQ19_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone IpgE"
                     /protein_id="HCS1802840.1"
                     /translation="MEDLADVICRALGIPSIDTDDQAIMLDDDVLIYIEKEGDSINLL
                     CPFCALPENINDLIYALSLNYSEKICLATDDEGGSLIARLDLTGINEFEDIYVNTEYY
                     ISRVRWLKDEFARRMKGY"
     gene            15551..16009
                     /gene="ipgF"
                     /locus_tag="OQQ19_001144"
     CDS             15551..16009
                     /gene="ipgF"
                     /locus_tag="OQQ19_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system lytic transglycosylase
                     IpgF"
                     /protein_id="HCS1802841.1"
                     /translation="MSRFVFIFLCFIPYLGRADCWDKAGERYNIPSSLLKAIAEKESG
                     FNKFAVNVNNNGSKDYGIMQINDFHSKRLREMGYTEEMLISHPCLSVHYAAKLLNEFM
                     LMYGRGWEAVGAYNAGTSPKKKKERLKYAEDIYKRYLRIAAESKQNNRRI"
     gene            16018..17133
                     /gene="mxiG"
                     /locus_tag="OQQ19_001145"
     CDS             16018..17133
                     /gene="mxiG"
                     /locus_tag="OQQ19_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein MxiG"
                     /protein_id="HCS1802842.1"
                     /translation="MSEAKNSNLAPFRLLVKLTNGVGDEFPLYYGNNLIVLGRTIETL
                     EFGNDNFPENIIPVTDSKSDGIIYLAISKDNICQFSDEKGEQIDINSQFNSFEYDGVS
                     FQLKNMMEDKSRVHILNGMYNKPSVFFFFAVIVVLIIIFSLSLKKDEVKEIAEIIDDK
                     RYGIVNTGQCNYILAETQNDAVWASVALNKSGFTKCRYILVSNKEINRIQQYINQRFP
                     YINLYVLNLVSDKAELLVFLSKERNSSKDTELEKLKNALIVEFPYIKNIKFNYLSDHN
                     AREDAKGIFTKVNVQYKEICETNKVTYSVREELTDEKLELINRLISDHKNVYGDQYIE
                     FSVLLIDDDFKGKSYLNSKDSYVMLNDKHWFFLDKNK"
     gene            17141..17392
                     /locus_tag="OQQ19_001146"
     CDS             17141..17392
                     /locus_tag="OQQ19_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EscF/YscF/HrpA family type III secretion system
                     needle major subunit"
                     /protein_id="HCS1802843.1"
                     /translation="MSVTVPDKDWTLSSLSETFDDGTQTLQGQLTLALNALAENPSNP
                     QLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAIIQNFR"
     gene            17405..17698
                     /gene="mxiI"
                     /locus_tag="OQQ19_001147"
     CDS             17405..17698
                     /gene="mxiI"
                     /locus_tag="OQQ19_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system inner rod protein
                     MxiI"
                     /protein_id="HCS1802844.1"
                     /translation="MNYIYPVNQVDIIKASDFQSQEISSLEDVVSAKYSDIKMDTDIQ
                     VSQIMEMVSHPESLNPESLAKLQTTLSNYSIGVSLAGTLARKTVSAVETLLKS"
     gene            17704..18429
                     /gene="mxiJ"
                     /locus_tag="OQQ19_001148"
     CDS             17704..18429
                     /gene="mxiJ"
                     /locus_tag="OQQ19_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SctJ family type III secretion inner membrane
                     ring lipoprotein Mxi"
                     /protein_id="HCS1802845.1"
                     /translation="MIRYKCFILFLLLMLIGCEQREELISNLSQRQANEIISVLERHN
                     ITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNPERVDISQMFPTDSLVSSPRAE
                     KARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEKNISSKPMHISVIAIYDSPKESE
                     LLVSNIKRFLKNTFSDVKYENISVILTPKEEYVYTNVQPVKEIKSEFLTNEVIYVFLG
                     MAVLVVILLVWAFKTGGFKRNKI"
     gene            18426..18953
                     /locus_tag="OQQ19_001149"
     CDS             18426..18953
                     /locus_tag="OQQ19_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion apparatus protein OrgA/MxiK"
                     /protein_id="HCS1802846.1"
                     /translation="MIRMDGIYKKYLSIIFDPAFYINRNRLNLPSELLENGVIRSEIN
                     NLIINKYDLNCDIEPLSGVTAMFVANWNLLPAVAYFIGSQESRLINHSEMVISYYGGK
                     ISKQGEAAIRSGFWHLIEWKENISVGIYERINLLFNPIALEGNYTPVERNLSRLNEGM
                     QYAKRHFTGIQTSCL"
     gene            18895..19590
                     /gene="mxiN"
                     /locus_tag="OQQ19_001150"
     CDS             18895..19590
                     /gene="mxiN"
                     /locus_tag="OQQ19_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858274.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa type III secretion system linker protein
                     MxiN"
                     /protein_id="HCS1802847.1"
                     /translation="MKVCNMQKGTLPVSRHHAYDGVVIKRIEKELCKTIKDRDTESKK
                     KAICVIKDATKKAESLRIDAVCDGYQIGIQTAFEHIIDYICEWKLKQNENRRNIEDYI
                     TSLLSENLHDERIISTLLEQWLSSLRNTVTELKVVLPKCNLALRKKLELDLHKYRSDV
                     KIILKYSEGNNYIFCSGNQVVEFSPQDVISGVKIELAEKLTKNDKKYFKELAHKKLRQ
                     IAEDLLKENPVND"
     gene            19583..19990
                     /gene="mxiM"
                     /locus_tag="OQQ19_001151"
     CDS             19583..19990
                     /gene="mxiM"
                     /locus_tag="OQQ19_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000609865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein MxiM"
                     /protein_id="HCS1802848.1"
                     /translation="MINQINASNALQQRLNSEEFVNLNERLSSSQSFDENIIYEIMQY
                     FSQSELNSIDNDELHNKIEQLFNSRFPYLTAAQKSSLLNKLIDANQYVDLHEGFYASL
                     SIYNNIDFYIKTTTFDSLISVFDAGREADDSTW"
     gene            19974..20402
                     /gene="mxiM"
                     /locus_tag="OQQ19_001152"
     CDS             19974..20402
                     /gene="mxiM"
                     /locus_tag="OQQ19_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858276.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system pilotin MxiM"
                     /protein_id="HCS1802849.1"
                     /translation="MIRHGSNKLKIFILSILLLTLSGCALKSSSNSEKEWHIVPVSKD
                     YFSIPNDLLWSFNTTNKSINVYSKCISGKAVYSFNAGKFMGNFNVKEVDGCFMDAQKI
                     AIDKLFSMLKDGVVLKGNKINDTILIEKDGEVKLKLIRGI"
     gene            20532..21164
                     /gene="mxiE"
                     /locus_tag="OQQ19_001153"
     CDS             20532..21164
                     /gene="mxiE"
                     /locus_tag="OQQ19_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system transcriptional
                     activator MxiE"
                     /protein_id="HCS1802850.1"
                     /translation="MEGFFFVRNQNIKFSDNVNYHYRFNINSCAKFLAFWDYFSGALV
                     EHSHAEKCIHFYHENDLRDSCNTESMLDKLMLRFIFSSDQNVSNALAMIRMTESYHLV
                     LYLLRTIEKEKEVRIKSLTEHYGVSEAYFRSLCRKALGAKVKEQLNTWRLVNGLLDVF
                     LHNQTITSAAMNNGYASTSHFSNEIKTRLGFSARELSNITFLVKKINEKI"
     gene            21151..22851
                     /gene="mxiD"
                     /locus_tag="OQQ19_001154"
     CDS             21151..22851
                     /gene="mxiD"
                     /locus_tag="OQQ19_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system secretin MxiD"
                     /protein_id="HCS1802851.1"
                     /translation="MKKFNIKSLTLLIVLLPLIVNANNIDSHLLEQNDIAKYVAQSDT
                     VGSFFERFSALLNYPIVVSKQAAKKRISGEFDLSNPEEMLEKMTLLVGLIWYKDGNAL
                     YIYDSGELISKVILLENISLNYLIQYLKDANLYDHRYPIRGNISDKTFYISGPPALVE
                     LVANTATLLDKQVSSIGTDKVNFGVIKLKNTFVSDRTYNMRGEDIVIPGVATVVERLL
                     NNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIAYPETNSIL
                     VKGNDQQIQIIRDIITQLDVAKRHIELSLWIIDIDKSELNNLGVNWQGTASFGDSFGA
                     SFNMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVS
                     LVGERNSSLEHVTYGTLINVIPRFSSQGQIEMSLTIEDGTGNSQSNYNYNNENTSVLP
                     EVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTRNISN
                     IVRVFLIQPREIKESSYYNTAEYKSLISEREIQKTTQIIPSETTLLEDEKSLVSYLNY
                     "
     gene            22870..23937
                     /gene="mxiC"
                     /locus_tag="OQQ19_001155"
     CDS             22870..23937
                     /gene="mxiC"
                     /locus_tag="OQQ19_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system gatekeeper subunit
                     MxiC"
                     /protein_id="HCS1802852.1"
                     /translation="MLDVKNTGVFSSAFIDKLNAMTNSDDGDETADAELDSGLANSKY
                     IDSSDEMASALSSFINRRDLEKLKGTNSDSQERILDGEEDEINHKIFDLKRTLKDNLP
                     LDQDFIDRLKRYFKDPSDQVLALRELLNEKDLTAEQVESLTKIINEIISGSEKSVNAG
                     INSAIQAKLFGNKMKLEPQLLRACYRGFIMGNISTTDQYIEWLGNFGFNHRHTIVNFV
                     EQSLIVDMDSEKPSCNAYEFGFVLSKLIAIKMIRTSDVIFMKKLESSSLLKDGSLSAE
                     QLLLTLLYIFQYPSESEQILTSVIDVSRASHEDSVVYQTYLSSVNESPHDIFKSESER
                     EIAINILRELVTSAYKKELSR"
     gene            23950..26010
                     /gene="mxiA"
                     /locus_tag="OQQ19_001156"
                     /gene_synonym="virH"
     CDS             23950..26010
                     /gene="mxiA"
                     /locus_tag="OQQ19_001156"
                     /gene_synonym="virH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein MxiA"
                     /protein_id="HCS1802853.1"
                     /translation="MIQSFLKQVSTKPELIILVLMVMIIAMLIIPLPTYLVDFLIGLN
                     IVLAILVFMGSFYIERILSFSTFPSVLLITTLFRLALSISTSRLILVDADAGKIITTF
                     GQFVIGDSLAVGFVIFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLK
                     AGIIDAAGAKERRSILERESQLYGSFDGAMKFIKGDAIAGIIIIFVNLIGGISVGMSQ
                     HGMSLSGALSTYTILTIGDGLVSQIPALLISISAGFIVTRVNGDSDNMGRNIMSQIFG
                     NPFVLIVTSALALAIGMLPGFPFFVFFLIAVTLTALFYYKKVVEKEKSLSESDSSGYT
                     GTFDIDNSHDSSLAMIENLDAISSETVPLILLFAENKISANDMEGLIERIRSQFFIDY
                     GVRLPTILYRTSNELKVDDIVLLINEVRADSFNIYFDKVCITDENGDIDALGIPVVST
                     SYNERVISWVDVSYTENLTNIDAKIKSAQDEFYHQLSQALLNNINEIFGIQETKNMLD
                     QFENRYPDLLKEVFRHVTIQRISEVLQRLLGENISVRNLKLIMESLALWAPREKDVIT
                     LVEHVRASLSRYICSKIAVSGEIKVVMLSGYIEDAIRKGIRQTSGGSFLNMDIEVSDE
                     VMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLIDNRFKSILVISYAEIDEAYTINV
                     LKTI"
     gene            26023..26424
                     /gene="spa15"
                     /locus_tag="OQQ19_001157"
                     /gene_synonym="spaK"
     CDS             26023..26424
                     /gene="spa15"
                     /locus_tag="OQQ19_001157"
                     /gene_synonym="spaK"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone Spa15/SpaK"
                     /protein_id="HCS1802854.1"
                     /translation="MSNINLVQLVRDSLFTIGCPPSIITDLDSHSAITISLDSMPAIN
                     IALVNEQVMLWANFDAPSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRV
                     VIKDDYVHDGIVFAEILHEFYQRMEILNEVL"
     gene            26428..27720
                     /gene="spaL"
                     /locus_tag="OQQ19_001158"
                     /gene_synonym="mxiB"
                     /gene_synonym="spa47"
     CDS             26428..27720
                     /gene="spaL"
                     /locus_tag="OQQ19_001158"
                     /gene_synonym="mxiB"
                     /gene_synonym="spa47"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system ATPase SpaL"
                     /protein_id="HCS1802855.1"
                     /translation="MSYIKLLTQLSFPNRISGPILETSLSDVSIGEICNIQAGIESNE
                     IIARAQVVGFHDEKTILSLIGNSRGLSRQTLIKPTAQFLHTQVGRGLLGAVVNPLGEV
                     TDKFAVTDNSEILYRPVDNAPPLYSERAAIEKPFLTGVKVIDSLLTCGEGQRMGIFAS
                     AGCGKTFLMNMLIEHSGADIYVIGLIGERGREVTETVDYLKNSEKKSRCVLVYATSDY
                     SSVDRCNAAYIATAIAEFFRTEGHKVALFIDSLTRYARALRDVALAAGESPARRGYPV
                     SVFDSLPRLLERPGKLKAGGSITAFYTVLLEDDDFADPLAEEVRSILDGHIYLSRNLA
                     QKGQFPAIDSLKSISRVFTQVVDEKHRIMATAFRELLSEIEELRTIIDFGEYKPGENA
                     SQDKIYNKISVVESFLKQDYRLGFTYEQTMELLGETIR"
     gene            27813..28151
                     /gene="spa13"
                     /locus_tag="OQQ19_001159"
                     /gene_synonym="spaM"
     CDS             27813..28151
                     /gene="spa13"
                     /locus_tag="OQQ19_001159"
                     /gene_synonym="spaM"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858283.1"
                     /note="Not similar to SpaM from Salmonella T3SS; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein Spa13"
                     /protein_id="HCS1802856.1"
                     /translation="MEALDKRIIYFLQLENDLEPVGAQSVSQLFNTRRKIAIVKKHII
                     QYQSERILLKGRIEEIQKDIDEANASKRKLLHKESKICKRIGLIKRNNFAKQLILDEL
                     SQEDMKYGIR"
     gene            28138..29016
                     /gene="spa32"
                     /locus_tag="OQQ19_001160"
     CDS             28138..29016
                     /gene="spa32"
                     /locus_tag="OQQ19_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system needle length
                     regulator Spa32"
                     /protein_id="HCS1802857.1"
                     /translation="MALDNINLNFSSDKQIEKCEKLSSIDNIDSLVLKKKRKVEIPEY
                     SLIASNYFTIDKHFEHKHDKGEIYSGIKNAFELRNERATYSDIPESMAIKENILIPDQ
                     DIKAREKINIGDMRGIFSYNKSGNADKNFERSHTSSVNPDNLLESDNRNGQIGLKNHS
                     LSIDKNIADIISLLNGSVAKSFELPVMNKNTADITPSMSLQEKSIVENDKNVFQKNSE
                     MTYHFKQWGAGHSVSISVESGSFVLKPSDQFVGNKLDLILKQDAEGNYRFDSSQHNKG
                     NKNNSTGYNEQSEEEC"
     gene            29010..29891
                     /gene="spa33"
                     /locus_tag="OQQ19_001161"
                     /gene_synonym="spaO"
     CDS             29010..29891
                     /gene="spa33"
                     /locus_tag="OQQ19_001161"
                     /gene_synonym="spaO"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000944309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SctQ family type III secretion system ring
                     protein Spa33"
                     /protein_id="HCS1802858.1"
                     /translation="MLRIKHFDANEKLQILYAKQLCERFSIQTFKNKFTGSESLVTLT
                     SVCGDWVIRIDTLSFLKKKYEVFSGFSTQESLLHLSKCVFIESSSVFSIPELSDKITF
                     RITNEIQYATTGSHLCCFSSSLGIIYFDKMPVLRNQVSLDLLHHLLEFCLGSSNVRLA
                     TLKRIRTGDIIIVQKLYNLLLCNQVIIGDYIVNDNNEAKINLSESNGESDHTEVSLAL
                     FNYDDINVKVDFILLEKKMTINELKMYVENELFKFPDDIVKHVNIKVNGSLVGHGELV
                     SIEDGYGIEISSWMVKE"
     gene            29896..30546
                     /gene="spa24"
                     /locus_tag="OQQ19_001162"
                     /gene_synonym="spaP"
     CDS             29896..30546
                     /gene="spa24"
                     /locus_tag="OQQ19_001162"
                     /gene_synonym="spaP"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein Spa24/SpaP"
                     /protein_id="HCS1802859.1"
                     /translation="MLSDMSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQ
                     QVPSNMTLNGIALIMALFVMKPIIEAGYENYLNGPQKFDTISDIVRFSDSGLIEYKQY
                     LKKHTDLELARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLP
                     FIVVDLVISSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYINVPA"
     gene            30561..30821
                     /gene="spaQ"
                     /locus_tag="OQQ19_001163"
     CDS             30561..30821
                     /gene="spaQ"
                     /locus_tag="OQQ19_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein SpaQ"
                     /protein_id="HCS1802860.1"
                     /translation="MSDIVYMGNKALYLILIFSLWPVGIATVIGLTIGLLQTVTQLQE
                     QTLPFGIKLIGVSISLLLLSGWYGEVLLSFCHEIMFLIKSGV"
     gene            30821..31591
                     /gene="spa29"
                     /locus_tag="OQQ19_001164"
                     /gene_synonym="spaR"
     CDS             30821..31591
                     /gene="spa29"
                     /locus_tag="OQQ19_001164"
                     /gene_synonym="spaR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858288.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein Spa29/SpaR"
                     /protein_id="HCS1802861.1"
                     /translation="MDISSWFESIHVFLILLNGVFFRLAPLFFFLPFLNNGIISPSIR
                     IPVIFLVASGLITSGKVDIGSSVFEHVYFLMFKEIIVGLLLSFCLSLPFWIFHAVGSI
                     IDNQRGATLSSSIDPANGVDTSELAKFFNLFSAVVFLYSGGMVFILESIQLSYNICPL
                     FSQCSFRVSNILTFLTLLASQAVILASPVMIVLLLSEVLLGVLSRFAPQMNAFSVSLT
                     IKSLLAIFIIFICSSTIYFSKVQFFLGEHKFFTNLFVR"
     gene            31598..32626
                     /gene="spa40"
                     /locus_tag="OQQ19_001165"
                     /gene_synonym="spaS"
     CDS             31598..32626
                     /gene="spa40"
                     /locus_tag="OQQ19_001165"
                     /gene_synonym="spaS"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     switch protein Spa40/SpaS"
                     /protein_id="HCS1802862.1"
                     /translation="MANKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISF
                     FSLSDVMLLYRYVIINDFEINEGKYFFAVVIVFFKIIGFPLFFCVLSAVLPTLVQTKF
                     VLATKAIKIDFSVLNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFWINDRKIIF
                     SQVFSSVDGLYLIWGGLFKDIILFFLAFSIFVIILDFVIEFILYMKDMMMDKQEIKRE
                     YIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPF
                     ISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVW
                     LEQVENTH"
     gene            32639..32881
                     /locus_tag="OQQ19_001166"
     CDS             32639..32881
                     /locus_tag="OQQ19_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802863.1"
                     /translation="MCYMGVNFCNKIGIDQSEFEIESSIINSIANEVLNPISFLSNKD
                     IINVLLRKISSECDLVRKDIYRCALELVVEKTPDDL"
     gene            complement(33488..33920)
                     /locus_tag="OQQ19_001167"
                     /pseudo
     CDS             complement(33488..33920)
                     /locus_tag="OQQ19_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611997.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
BASE COUNT        10567 a         4959 c         6796 g        11598 t
ORIGIN      
        1 ttgttgactg cctgtgcggc atctggtatc aaggtggcgt gaagccggtt caggttctca
       61 tgcggaacgt tggaacctat atccccccga taccaaaggc gaaatgtaag tgacaaaatg
      121 caatgaacac gttctccgtt aactgaggag catggtgata aataaaggta aatgcagaag
      181 gtgtagagtc tcgcagattt ctgacatcat agagcctaac attagatgca taacgctaca
      241 gattgtagaa tctctacagg tgaaatatac actggttggc gtttatgtcg caaaacatgt
      301 cattcaggtt catctcacca ataaggatat gagtgaagtg gaggataagt gagtctgctg
      361 tcagagtttt ctggtgtatg tcagtaactg cagaaccatg tctgcttgat atgggagctt
      421 atggaggctc tctgtacaag gttagggagc taacaaagca gggataaaaa gtccgcctga
      481 tgcaggcacg gttcgttaaa tcttttgcca ttggtaacaa aatggtgcga tgaatgttca
      541 ggctatcttt atcttgatgg tggttcagct gtttggtaaa gaaatcgctg taacaataga
      601 agaactgcag gcagtactgg tcccacattg tttgctcagt caactggtga agttccgtag
      661 cgcgtaaatt aatgctttgc atgaaacgtt actggagtgg atgaaagaat acctgcatat
      721 atcattactg cgttggatta ccagtacaac agattgaatg aactggacat gttgatagac
      781 ggcattgaaa agcagcttat aagcatagtg cggcagagtt aattggagag cacttcgcct
      841 tctgagtatt aagtaatcat ggtggtacct gcggatacta tctattcact gtgctcggtc
      901 ggcagcctta ctgaccaagg agttggggga gttgataaca aagttgaaaa aacagctctc
      961 aaccaaggtg gttattgtaa caatagcaaa taagctggtg tgacctgtat cacaataacc
     1021 gattatggac gtaaatacga caaaaatatg tcagtatcag gcggtattaa ttgctgatgc
     1081 tgatggacat taactcttaa taaaagggtg gatgctgaaa ggttgttatg gtgacggacg
     1141 tgatgacgac ggaaaagagt atgaggtttt ggatttaaag ttcgttcggg gaataaggac
     1201 ccggtcagct aattctcata gtagttcgca ttgctggatg caatactgtg ctgcaattac
     1261 tcgtcgatgt cggaacaacg gaagccttgc aaacggggat gtattcatac aggtgttatg
     1321 ttatatgggg ttttattgca gggggctata ccaagagaat atatgatatc tcatcagact
     1381 gatgtgaggg taaatgagaa tagagtaaac gaacaaggtt gttttttggc gaggaagcag
     1441 atgtatgaca attcttgtgg agctgccagt ttactctgtg ctgcaaagga attaggggtt
     1501 gataaaatac cacaatacaa agggtctatg tccgaaatga caaggaagag ttctcttgat
     1561 ttggataatc gttgtgagcg ggatttatac ttaataacta gtggtaatta taatccgaga
     1621 atacacaaag ataatatcgc ggatgccggt tattctatgc ctgataagat agtcatggct
     1681 acgaggcttc ttggattgaa tgcttatgtc gttgaagaaa gtaacatttt ttcgcaagta
     1741 attagtttta tttatcccga tgcaagggac ttattaattg gcatgggatg taatatagta
     1801 catcaacgag atgtgttatc ttctaaccaa agagttttgg aagctgttgc tgtatccttt
     1861 attggagttc ctgtcggcct ccactgggtg ttgtgtagac ctgatggaag ctatatggat
     1921 ccagctgtag gagaaaatta ttcttgtttt tcaactatgg aattaggtgc aagaagaagt
     1981 aattctaact ttataggata tactaaaata ggtatttcca tagttataac taatgaggct
     2041 ttgtaaattg tcgtttttta tctgtgaagg agcttgaata ttttggggcg gggggcataa
     2101 caaatgatat tactgagtac aaatttagct atattgggcg gattagttgt gtgggaagat
     2161 gaaatgtttc tcttgaaata agtgaactcc ctcaaggaat gattgtgtgc ttaaatattt
     2221 aagtgctggt aagtttgaga aggctgacat attttgcaga gcaaacagtg attgacttgg
     2281 atgatatttt tattttaatc actcgttgta attggagtat gctttatttt atttgaaaat
     2341 agatgtattt tatacccgca atttaaattg taagccctat gaggggtatg gatattataa
     2401 gttactcttt gactaagcat aacttttggg gttagaaaaa taaatctctt gttaataatt
     2461 aatatgattt taaaatcaaa cttgtttata attataaaat aatgtaagtc ggtcatttta
     2521 tgggaagatt aggagaataa aacagtaatt atatttgaga aatctgctaa tatattctta
     2581 aagctttttt gatactgtga acgaagtctg ttaatggtgg attttttgtt tatcaccatg
     2641 taaaaaaatt gagtagtaaa agcgttgact gctaatcctc gctgttttta ttgaaacgat
     2701 taaaaatacg ctgaatattt tcggccagtc actcatcttc acataaaatt ttgaccatca
     2761 tgccgcatcc cttagttgca caattcattt tcaatgatat gaatattact aatttcacca
     2821 gataatgttc tcgtggtcag cagggtatga gttttcaccg taattttaag gaaacacagt
     2881 gcgtggggat tgaataacag atagccgacg gaattacccc accggctgaa agtcaagttc
     2941 aacgaagatt tttattatct gaattgggca gtttacatca gtgttcgatg tttatgaaga
     3001 cgatagatgg cgagaaatta tatctcgaat agcttcatct atttctctct gaactgtttt
     3061 gtttatttta gataatgtaa atattagagt tctgtttgtt ttattctctt ttctttttat
     3121 gtaagtccgt ttgtctttag aaataaataa cgagtcaact tttagcgaag ggttttgctt
     3181 tctgtttttg cttttcttta tgatgtttaa aatttctttt ttatatatgt ccgggggcaa
     3241 atttgtatca aggtctttta tttcttcctt taatattggt agtgtagaac taagagattc
     3301 attagccttt tcaagtcctt tataataatt gaataatatc ttgtagtcat taaagttaag
     3361 ttctgacgcg attggaaata gagatattat ttcctgtgga acgcttgctg cctgaaaggc
     3421 acgagtgact ttcgcgcgag acagattctc ttttttggct atgtctttat aggacatccc
     3481 tgatactttc agaaaattaa gaccaatacc aagttctcgg atgctatgct cttttgctgt
     3541 ttgtatatcg tttgctagtt ttctggcatc aagagtagat atatattctt ttgaatatag
     3601 aacttcaaga tctgctcctg catatattgc agatgctctt ctacgagtgc catccagaat
     3661 ttcaattcta ccatcaatct cccttcctat tacagggaag aattgttgta gctttatagt
     3721 ttttatgata tcggctaatg attcttctgt tagggattct tgatcgcgta cattcgtttt
     3781 ttggttgacg aaggttaaat cttggatcct tttatgagga atcttggctt tgataaagga
     3841 aactttatta ccagaatgga gtgtaaactc tttcttttgg ccttccttta tacttaacaa
     3901 gtcgttgcac aaatccacca tatcacaccc tgtttattca tattgattta tattgacaaa
     3961 agttaaatgc agtgtgagca agattgtatg taactgttga tgatagtcaa cggtagtctt
     4021 aaaaattact attttaatag ctggattgat gcaatttatc tttattggat aaaagaataa
     4081 tattcttgtg gagctctgat gtgagagctc catagatgaa aaaatgctta tcaattacta
     4141 tattgatttt gtactatttt tgactacaga aataagatct ccaatagtaa taatgtgttc
     4201 taatgcagat tcatctatac gtagattgaa ctcaaaacta atcatatcca gcatttcaat
     4261 cagagaaaga gaatcggcag aaagatcttc aataaattta gtttcttcag atagtttgct
     4321 gtacgctata ccatagcaaa aggccactat tgataatatt ttttctttta tcatatttta
     4381 atccttattg atattcttta atacttttga tagggaagtg gttacatctt ttgctgcttt
     4441 atatatatta ttgttttcag ctgtaatatc attgttattt tttaaatcag atatatcatc
     4501 tgtaagtaat tctgcagagg tatcgtcaat ttttgacaat accttgctga gggcgctaga
     4561 tacttctttt gccttttcat agatcgcatg atttttatca attgtatctg cgttggtttc
     4621 tgttacgtag tttattgtat ttgcatctgt aacttttaat ttgttgttta ttctgtgttc
     4681 tgttgtggat tttgtaatgt cctttgattt ttcctgtaac tctcgttctt gtgttcctga
     4741 tttagttcca atgagagata taagattact tagggagttt gttacttttt ttgaagcttc
     4801 aaatatcgtt tcccgtgtta aatatgtgtc tccatttctt gataaaaaat cagtctgaag
     4861 tacttttgaa tcagtgtttg agttgaattt attgatttgc gaagctactc tatgagaaag
     4921 agaagcgcta cttttagttg tatctgatga gttatcatta ctgcttgtca ctccttccgg
     4981 gtggagaggg ggggtggttg aagagttctg tatgttcaga ggcctgtgtc cccgagaaag
     5041 agagttattt gtagatcttt cttgactact cgtagttaac aggtctgaac ctattccatc
     5101 cgaattatct ggagtatggt tgaaaacctt ttctaaagct gaattatttg caaatgtctg
     5161 gacagtatct gatatagagt gtggtagaac ggaagttact ttttgaacta gtgctctttg
     5221 tggatttagt aatgagtttc cgttacggga taatagatcg tttgtctgag aagtaggaga
     5281 ctgtgcatca ttttctgggt tctcgtgata gctattgtca tatactctgt tgtcaaaaac
     5341 tctattatcg taagttctat tatcattatt tatatgatag tgaattacag gttgggatgt
     5401 tttctcattg gctccggggg ttggtccgcc atctggcata tcttcgggag gtgtagggag
     5461 gccatcttgg ataggatgcg aatcttttat atcttctaaa atatcattaa ggacttttct
     5521 caacagctca ggaaacacgg ctactgtatt taagtctctt gacagtttac ctataccaaa
     5581 tcctttacta tcaatagtat ttttacgttg attgcgcaaa ctatcaaagg caagttttgc
     5641 ctgtgcgtca actaaatcat ctagtttgag agatgaaaca gtttcattac ttaactttaa
     5701 ttcagcaaga atattattct tgataaatga tgatacttca gtattgagga gtttttgtcc
     5761 caatgataaa gcttcaccag atgtgtgttg ttgtgctaat agtgcaagtc tgtgctcaat
     5821 gttttgtcgt aattgatgga gtttcttatt ctttgccgac catggtccaa aggcagaatc
     5881 ttgggataat ttatctttta taattagttc cgaatactgt gcgacaattt tttgaagtcc
     5941 cttttcgttt tcaaaattaa gatcattttg atgtactaag gagtacaaaa catttgaaaa
     6001 ttcgagaatc tcgcttttgg catacgcatt cattgagttg gaataaatgc ttcttaacac
     6061 atcttctttc cctgaggaag aaaataaaaa atcaagacat ttctgattaa aagacgttgc
     6121 aaagttttct ttttcagaca ctgatgctgg tgtttttaga gaagtttgcg aactatggat
     6181 atcggatatt ttgcttttta actcgctgta ttctgttgat gatggtgaag ttgccttata
     6241 taagaatgtt ggcgcttgag tattatttac attatgcatg gcgcacctca gaaatggaga
     6301 aaaagtttat ctgtatctgt acatgagctt attgtactac tcaaaacctt tactaaatta
     6361 tcaaaaatac tattggcatt actgtatttt tgaactaaag tttgaagatt atttttcatt
     6421 gtttcatctt cggcagagaa tccggcattc catgcctgat attttgcatt atctagcaca
     6481 acctcgccat ttccacctag attatttaag ctttttaaca tattgtctat tggggtcatg
     6541 tttatattga caacatatcc cccgtttttt tcagatacct tgccgattgt tccacctaat
     6601 tctgtaagcc atttatttgc ttgttcctta ctaacagtat tatttgctgg atatagcggt
     6661 ttatctttat atttttcctt gagctttgtc aattcgtctt taagcgattt gacttgtaat
     6721 ttcacggagt ttccgtcgtt acctccggga gagatccagc cggcaagact ggaaagaaca
     6781 gcgctaaaat cttgatacat ttgagtatat gaactaacgg catgttcata tactttcaga
     6841 tactgttcat taatattatt gattgacttt gcaattttat cccacagttc tctgtgagat
     6901 atcatttcat atccatcaag ctcggcttct ttcggggctg aatgtaataa ttctcttgcg
     6961 tctttattaa ttggatattc tttcttggaa agaatatcca atagttgagc ggatttgttt
     7021 acatccatgc taatctgaga tgaatgtaat gctatttctt ctagcgatgt tttagtcaac
     7081 gttttttgtg agagatcttt ctttaatgcc tgatttgttg ttctgatatt atgaagggtg
     7141 tcgttgagca tagtaaggga acttacagga tgagaactgg tcgttgtttt tatatcagaa
     7201 ttaactgttt cggttgatga accgttggta ttgtttgggc tgaatgatga ggtggaaata
     7261 ctattagtca gagttgttat attcatggtt atttccttat aggaagagcc atatattatt
     7321 atggctcttg gatatattaa gctcgaatgt taccagcaat ctgactggct gtagaattcc
     7381 ttgattggtt gatgttgtca attatattca ataatttttg tattaattga tttgtcgctt
     7441 gggatgcttc tttagatact tgggatgctt cctctgcttg tttactgctg gcctgactga
     7501 ttagttgttc ttcttcttca agagcagatg tataacgccc tcctgatgtg gatatattac
     7561 cagcaacggc tgatgtctcc attgttgcac ggccaatgtt ttgtttttgc tgagcagaaa
     7621 gggtattgag ctcgtaagct cttctctggg tgtcaatttt atcctgcaaa gaaatatcgg
     7681 gagaactaag agaagtttta tgttcagttg acagggatat attatctggt gccagtttat
     7741 ttttacctaa aatttttgtg ctagagttag tttgtggtga ggtgatattt gtatctattt
     7801 gtttatttaa ccctaattta gaacctgcaa gctctttttc aagagattga gcagtggcaa
     7861 ggttctttct taaggctcct ttttgttcgc taatccctga atgcgttttt ttggcaccga
     7921 tacccgttat acctacttgt gtgaccgctc cagtaatgct tgatgatagg gctgctaggc
     7981 cttgccgaac aatgttctct gcagctgatt ttgtagcatc gaacgcaatc aatgacaatt
     8041 gagagcccaa tctagtttct gcagtgcgga gagcagaaag tagaacggct acactaataa
     8101 ttaaagaaac agcattagaa gaaagactgg aaatatccag ggtgttctct ggggtaattg
     8161 tgtgactcat ttctgaaaga tctttcatct ttttgtcagt aaggcgagca atgatttctg
     8221 aatcatgctg aacctgctct gataacttta aaagttgatc atcatttaat gtagttgtta
     8281 atacgggatt tttaccgaca ttaagtggaa tatgtgctgc taactgctga taattttgtg
     8341 atttttgtgt ttcggaagaa ctttgagttt gttttgtaga tatatctgta tataaaatcg
     8401 gggctgattt tgtgttttga atttccataa cattctcctt atttgtatca agcagtagtt
     8461 tgttgcaaaa ttgcttttgc aacatcagtt ctattagcct gagagttgga cattgaggct
     8521 aacagctctg caattacttc ctgcaattgg ccgaattttt ctattgcgtc accgatgtat
     8581 tttgacagtt gttcaacttg atatttcgat aatgtcaggt ctgctagatt tttcgacgcg
     8641 ttgttttgga aaacagcaga agcgacattt cctcccgctt gtgtggcaga gttaacactt
     8701 tctcctaata aaactgcttg gtttaaatgg gtggaaataa tttgtttgga tattacttca
     8761 tcacccgctg caccaagaaa tttatttaat ctggcaactg cattagtgat taaatcgtcc
     8821 agttgagaag aaaaattctt gagaaacttt ggtataaggt ctgtgagggt tttacctatt
     8881 attttgccaa tattctctgc aagttttgct gctgcctgtt taccaacagt ggctacgaga
     8941 acgactgctg caaccaagac aagagcgcct gcgattgccc ccagaataga gccaatcatt
     9001 ttggcttttt tcgagtcgac gcccaagcct tcgagcattt ttgtaaatgc atctgaaagg
     9061 agtttgatta agggttcaat gactgctttc atgatcggat tcagggcttg ttccatgaag
     9121 gaattgccgg tcgctgcttg tactatagca tccgtaacca taagagctaa accaacagct
     9181 gccagtgcta gagatgctcc tccagaaaaa gctgctgcaa caacactaac gatagttaaa
     9241 agtgccccaa gtattttccc aacacaaccc attactctgt tgagttcttc tgctttacgt
     9301 acttcagcag catactcatc agattttctc tccatttcag tttttcttga ttcttggaga
     9361 gactggaata gagccagatc attttttaaa gattcttcat tattttttcc aactagttga
     9421 ataaaggttg ccatcaattg agtaacactg gcaagtccgg ttaatgattt ctgctgggtt
     9481 gatagctgtt cagcagatgc tgtgtttgaa aatgcagaaa aagagtctat ttctttttcg
     9541 agttgcattg atttatctgt aagtttgcta tgaattgaca gagttttctg ctcaatcaat
     9601 gtcctgtctt taactgctgc gtcttttttg atagtgagtt gtatttcttc ccgtcttaat
     9661 tttttatttt ctggtgaatc tggggcgagt tcggataatc ttgtttgaat ttggttaatt
     9721 ttattttcta ggtcttttat tttagaatct gcgtttttta gtttattaat ttgtttttca
     9781 tagtctctgg ttagtccttc agtttcagat agaagagtat taattttatc ggagaattct
     9841 aggttttttt gctgtcttgc ctgttgttgg gacttccagg cagtaatttt atttgttaat
     9901 gcagttaaag atttttcacc aagtatttga ataaggtttc caattaaaag cgttagttgg
     9961 gaacttgcat ttaatgactt tggtgcttta agttcaggga ttaatatatt cgaagttgag
    10021 tgtgcattag ttgtattaat atttttgtta gcagcaagat cagcaattgt aagagaaaat
    10081 aatttgttag ctgcatcatt tgcagcctgg atagtattgt ctccaagctc agtggaagcc
    10141 aatattttgg caagaggcaa accagtggtt gtggtgctta cattatgcat aataattact
    10201 ccttgatatc ctgaattgcg tctaagtatg attgtgcttt tatttttaat ttttcatcat
    10261 tgctgtgttg aattacgagt tcgaagcact ctttggcttt caagggggct ttcaaccgaa
    10321 gctggcattg tccagtatgg aataccggtg tatagtcatt ttttcctaat gcaaaagcga
    10381 cagcataaag gtctgctgct tgttggaact gttcttttat ctgataaata gctgcgagtc
    10441 ccataatgta gtctacattg taaaagtcgt atatacataa aaatctgaag aaaacttcag
    10501 cttcctctat tcttcctttg ttgtaaaagt cataagcata tgaataaatg tcatccatca
    10561 tatcatcagg aattgcatta atatctttca gtgtagcgcc agagttaatt gcatcaatta
    10621 ctgcagtaga gatgctttca ttttcagtga tatttaaaga cataaggtct cctttttgtc
    10681 tgcattactt taataagtat aagatttaat ataaacagat ttaatttgta ttgctttgac
    10741 ggtatacagc ctttagaacc tctgcgctta tttctatttg taaaactttt gttgattcat
    10801 taaatatttt atcgtagacg gaactggata ctagatttgt aagatccttc atttgtgtgt
    10861 taaacaaatc catgtcactg ctataacgtt ttaaaatctt tgctctgagg ccagatgagg
    10921 caatctcgtt tagtgctgta tgactgatag atgtttgtgc tgatttttca tcaagtttta
    10981 tatccgggaa ttttttttca atagctgcaa atatgttttt tttgttatct gaggtcaaaa
    11041 caactccatt gtgtatggcc atttcatcta tacttctgtt tatcattgaa gagacataag
    11101 aggttcgctc ttggctcatc caacaaaata gttgattccc cgaattacta tcttttattt
    11161 tgtctatgac gctgtccctg attttattta tattcaccgg gcatccaaaa ttcttctgag
    11221 gaaagcgttg ttttaagtta aaaacagata atattttctt tacaagctta ttgtgactta
    11281 acgaatcaaa tgatgggcga ggaatcgcga attcaacctg tggaagtatt ttgtttagaa
    11341 tttgcatgat accccctata tgttagttca cttctgaagt gatgtttgca atggttagtt
    11401 taatacaaaa taaaaattcg tacaaagatt caatgagttc atcaggtgaa agatattttt
    11461 tgtagtgttt cttggtcaaa acacattgat gagtatcagg gagaagacag atagaagaac
    11521 cataatctct actcaaagag tagttaagga tgagtatgtg ttctggatta ataatatttt
    11581 ctgtaaaaag ttcatgttca ttaagaagtc cggtcaaaaa gatgtattca tcattatctg
    11641 ttatacaaac aggtatttgt tcttcgagca atataaaggc ttgattttta tcgttaaaat
    11701 caagctttgc acctgttatt tcataaagtt tatcatatag tttgcgacac atttctatgg
    11761 ccttctatat attagaatga gagttattca ataaaagctt attgacctgt aataagtcgt
    11821 gaatgtaaag tttggttcca agatctggcg atttaagaga attgtaataa tcaatagttt
    11881 ttattgactt ttcgataatt acttcttttt tatctgttgc tccggttttt aattcgttta
    11941 atacacgaga catattgctg ggtgctgatt ttactaagta tgagtggcaa gcgttgatga
    12001 ccgcatcaaa gtcttctgaa gatacatttt cagtaggatg tttgtaaagt gaaattgata
    12061 aaggcttgaa tgtttttggg gtgtggataa ggttaatttt attgaaactt ttaagatagc
    12121 tacgtcgtaa ttgagtcaat ctggaaagat caaaatcaga ttcaatatac ttcattatct
    12181 cgttataaga ctgattgaga ctttcaatgc gttgcctaac tttatttgca tacgcgtata
    12241 cattgttagg tgtagcaacc aatttaacgt cagggagtgg aaagtatatt tcagaatttc
    12301 ctgctttaag aacattaagt gccataccag cacagttttc agatttactg attaatttat
    12361 aatttgccaa ttgtctgaaa gcatctgctt tcttttggca tataaatttt gacatgtttg
    12421 tttcatcaag gccaaaaagg ttatagctga ttttaccatc ctttgtttta ttatcacctg
    12481 ataatggaat gtatacttta tcagcactga ccccccaata accatagggg tctttttttt
    12541 gattagctct gggaaaaaat atttttttgt tgttattttg atcttgtttt gaatttaata
    12601 agtttctaac ctcttggcct gcatcaagtc tttcggctgt ttggtctgaa atcatattta
    12661 gtttgtcttg tttataggta tcgacactgt aacctgagcg tttttcaaaa aggtagttta
    12721 tttctgtatc ttttgtaaca ttcccgccgg gataccagct gagataggta tgagttggtt
    12781 cctgtagtaa attgtttttt atactgatac tggtatgccc taaatgggtt atgcctctat
    12841 ttccccagca acgaaacact aaatgtcttt caagattttt ggctgtaccg atgccatgaa
    12901 aactctctgc ggtattcaac attaatttga tgtctttacc tgtaaaagaa tgttgaattg
    12961 aatttttgac tgcttcatag gcggcaaacg cactttctgc agatttttcg ctagctaatg
    13021 tcttgaggaa aagcaataag gatttttgat tcgctagtcg ataatttttt agttgttcat
    13081 ttaatatctg tgaatttatc tttgcattaa tagtgcttaa tgttctgaaa aagagatcct
    13141 ttaggttgaa tttctgtgct accaatatag gtccatgctc tgtatcttca acgcgtatag
    13201 gcccttttgt attgcttgcg tcaatgaaat tgctaatttt gagaatcata ctttattaac
    13261 tctccattac gtggtgattg tggggatgta aaatgtattt gatatataat atattcaatt
    13321 aataaattta gaaacttgag cctgttaaca taatcaaatt ttcttttgct gtacataata
    13381 tgtacctcgt gagcatatgt agtgctggtt tcatcatgaa atcccacaag ttaaagtgtc
    13441 tgatatatca ggctcggagt gttatagaaa aagagagaac cctgttgaat aagtatcttt
    13501 tttgttgtaa aacgaggtac aaaactgcaa tcaatgcccc atttatgact gaggataatt
    13561 aaatgcacat aactaatttg ggattgcatc aggtttcatt tcaaagcgga gattcctata
    13621 aaggcgcaga agaaaccgga aaccaaaaag gtgtaagcgt gatttcatat caaagagtta
    13681 aaaatggaga gagaaataag ggggtcgaag cgcttaatcg attatattta cagaaccaaa
    13741 caagcttaac agggaaaggc cttttgtttg cgcgtgacag agctgcagtt ttttacgagg
    13801 caataaagtt ggcaggtggt gatacgtcaa aaattaaagc catgatggaa caattagata
    13861 cctataaact tggtgaagtt gataaaagaa atattaatga gcttaataaa gtaataagtg
    13921 aagagataag agcacagcta ggcattaaaa ataaaaagga attgcaatcg gaaataaaac
    13981 aaatatttac taattattta aataataaga attgggaacc gatcaacaaa aatattaatt
    14041 ataatgggaa aaattatggt tttcaattaa cacccgcctc tcatatgaag atagggaata
    14101 aaaatatatt tgtcaaagag tataatggaa aaggaatttg ttgtgcttct acgagagaga
    14161 gtaagcatat tgcgaatatg tggctttcaa aagtggtgga tgacgagggg aaggaaattt
    14221 tttcgggtat cagacatgga gttatatcag cctatggatt gaaaaaaaac tcatctgaaa
    14281 gagctgttgc agctcgtaat aaagctgagg agttagcaag cgcagcatta tatagcagac
    14341 aagaattatt atcacaggct ttgtctggta aaacagtaga tttaaagatt gtttcgactt
    14401 ctcttctgac gccgaccagt ttaactgggg gagaggagag tatgttaaaa gatcaggtaa
    14461 aggcattaaa agagttaaac tctaaaaggg gggaaccaac gaaattatta attcggaata
    14521 gtgatggtct tctgcaagaa gtaaaggtta atctaaaagt ggtgacattt aactttggtg
    14581 taaatgaatt agcgctaaaa atgggcttag gctggaggaa tgttgacaag cttaatggtg
    14641 aatcaatatg ttctttgttg ggggataatt tcctcaaaaa tggtgtgatt ggaggttggg
    14701 ctgcagaagc tatagaaaaa aatccaccat gtaagaatga tgtgatatat ctggctaacc
    14761 agataaaaga gattctaaac aagaagttac aaaaaaatga taatggagag ccgtataaat
    14821 tgtcacaaag aatggctcta ttggcttata ctataggtgc tgtaccttgc tggaattgta
    14881 agagtgggaa ggacagaaca ggtatgcagg atgctgaaat taaaagagaa ataataagaa
    14941 aacatgaaac agggcagttt tctcaattaa atagtaaatt atcctcagaa gagaaaagat
    15001 tattttctac tattctaatg aatagtggta atatggaaat ccaagagatg aatactggtg
    15061 tgcctggaaa taaagttatg aaaaaattac cgctatcttc gttagagctg tcttatgctg
    15121 aaagaatagg ggaccccaaa atatggaata tggtgaaagg gtattcgtca tttgtataag
    15181 aggaatatat ggaagattta gcagatgtta tttgccgagc cttgggtatc ccttcaattg
    15241 ataccgatga tcaagcaatc atgcttgatg atgatgtgtt aatatatatt gaaaaagaag
    15301 gagattcaat aaatttatta tgcccttttt gtgcattgcc tgaaaatata aatgatctta
    15361 tatatgcgtt gagcctaaat tactcagaaa agatatgttt agctactgat gatgaaggtg
    15421 gaagtctaat tgcgcgatta gatcttaccg ggataaatga attcgaggat atatatgtta
    15481 atacagaata ttatatttcg cgtgtgcgtt ggctgaagga tgaatttgcg cgaagaatga
    15541 aggggtatta atgtcccgtt tcgtatttat ttttctgtgt tttatcccat atttagggag
    15601 agctgattgt tgggataagg ctggtgaaag gtacaacatt ccatcgagtt tgttaaaagc
    15661 gattgcggaa aaagaatccg gatttaataa atttgcagtc aatgttaata acaatggaag
    15721 taaagattat ggtataatgc aaataaatga ctttcattct aaaagactta gagaaatggg
    15781 atatactgag gaaatgctaa ttagtcatcc atgtctttct gtacattatg cagcaaagtt
    15841 attaaatgag tttatgctga tgtatggaag agggtgggag gctgttggtg cctataatgc
    15901 aggaacatct ccgaaaaaga aaaaagaaag attaaagtac gcagaggata tctataaacg
    15961 ctatttgcgg atagcagcag agagcaagca gaataatcga aggatataag aggatttatg
    16021 tctgaggcaa agaactcaaa tcttgcacca ttcaggttat tagtgaaact cacaaacggt
    16081 gtcggggatg agtttccgtt atattatggg aataacttaa ttgttctcgg acggacgata
    16141 gaaacacttg agtttggaaa cgataatttc ccagaaaata ttattccagt aacagatagt
    16201 aaatcggatg gtataattta tttggccata agtaaagata atatctgtca atttagtgat
    16261 gaaaaaggtg aacaaattga tatcaattca caatttaact catttgaata tgacggagtt
    16321 tcttttcaac ttaaaaatat gatggaggat aaatcgagag ttcatatact aaacggaatg
    16381 tataataaac cctcggtgtt ttttttcttt gctgttattg ttgtgttaat tataattttt
    16441 tccctctctt taaagaaaga tgaagtaaaa gaaattgctg aaattataga tgataagaga
    16501 tatggaatag tcaacacagg acagtgcaat tatattcttg ccgaaacaca aaatgatgcg
    16561 gtatgggcat ctgtagcctt aaataaaagc ggatttacca aatgcagata tattctggtg
    16621 tccaacaaag aaataaatag aattcaacaa tatatcaatc aacgattccc atatatcaat
    16681 ttgtatgtgt tgaatttagt gagtgataaa gcggaattac tggtattttt aagtaaagaa
    16741 agaaatagtt caaaagatac cgaacttgag aaattgaaaa atgctctgat agttgaattt
    16801 ccgtatatca aaaatattaa attcaactat cttagcgatc ataatgcaag ggaggatgct
    16861 aaaggtattt tcacaaaggt aaatgtccag tataaagaga tttgtgaaac taataaagtt
    16921 acatattctg tcagagaaga actgacagat gaaaagcttg agctcattaa tagactgatt
    16981 tctgatcata aaaatgtata tggagatcag tatattgagt tttctgtact tttgatagat
    17041 gatgatttta aaggtaaatc atatcttaac agcaaagaca gttatgtaat gttgaatgat
    17101 aaacactggt tttttttaga taaaaataag tgaggataaa atgagtgtta cagtaccgga
    17161 taaagattgg actctgagtt cattatctga aacttttgat gatggaactc aaacattaca
    17221 agggcaacta acattggcac taaatgcatt agctgaaaat ccttcgaatc cacagttgct
    17281 ggctgaatac caaagtaaat tatctgaata tacattatat aggaacgcgc aatctaatac
    17341 tgtgaaagtg attaaggatg ttgatgctgc aattattcaa aacttcagat aatagggagc
    17401 attcatgaat tacatttatc cagtcaatca ggttgatatt atcaaagcca gtgattttca
    17461 atctcaagag atatcaagcc tggaagacgt cgtgtcggct aaatatagtg atattaagat
    17521 ggatacagat attcaagtat cacaaataat ggagatggta agccatccag aatcattaaa
    17581 cccagaatct ttggccaagt tacagacgac gctctcaaat tattcaatag gagtatcatt
    17641 agctggcacg ttagcaagaa aaacagtttc ggctgttgaa actttattaa agtcttaatt
    17701 tatatgatta ggtataaatg ttttatttta ttcttgttgc tgatgttgat tggatgtgag
    17761 caacgtgaag agttaatttc taatttatct caaagacagg caaatgaaat aatatctgtg
    17821 ctagaacgcc ataatattac tgctagaaaa gttgatggag gtaaacaggg gatctcggta
    17881 caagtcgaaa aggggacatt tgcatcggca gttgatttga tgcgcatgta cgatttgcca
    17941 aatccggaga gagttgatat ctcacaaatg tttcctacag attcattagt gtcttctcca
    18001 agagctgaaa aggcccgttt atatagtgct attgagcaac ggctggaaca gtctttagtt
    18061 tctattggtg gtgttatttc ggcaaaaata catgttagct atgatcttga agaaaaaaat
    18121 atatcttcaa aaccgatgca tatatcagta atcgctatat atgactcacc gaaagagtct
    18181 gaactattag ttagtaatat taagcgattt ttgaaaaaca ccttttctga tgttaagtat
    18241 gaaaatatat ctgtcatatt aactccgaaa gaagaatatg tttatacaaa tgtacaacct
    18301 gttaaggaaa ttaaatcgga atttttaaca aatgaagtaa tatatgtatt tctcgggatg
    18361 gctgtactag ttgtcattct tttggtatgg gcattcaaaa caggggggtt caagagaaac
    18421 aaaatatgat aagaatggat ggaatttata aaaaatatct ttcaataatt tttgatccag
    18481 cgttctatat aaatagaaat cggttgaatt tgccttctga actgttagaa aatggcgtaa
    18541 tcagaagtga gattaataat ctcataatta acaaatatga tctaaattgc gatattgaac
    18601 ctttaagcgg ggtaaccgct atgtttgttg ccaactggaa tttacttcca gctgttgctt
    18661 attttatcgg tagtcaagag tctcggttaa ttaatcatag tgagatggtt attagttatt
    18721 atgggggcaa aatcagtaag caaggggagg ccgctattcg aagtggtttt tggcatctta
    18781 ttgagtggaa ggaaaatata tctgttggta tatatgaaag aataaactta ttatttaatc
    18841 caattgcttt ggagggaaat tatacgcctg tagaaagaaa tttgtcccga ttaaatgaag
    18901 gtatgcaata tgcaaaaagg cactttaccg gtatccagac atcatgccta tgatggtgtt
    18961 gttataaaga gaattgaaaa ggaattatgt aaaaccataa aagatagaga cactgagagt
    19021 aagaagaaag caatttgtgt tataaaggat gctacgaaaa aagctgaatc actgcgtata
    19081 gatgctgtat gcgatggtta tcaaattggt atacagactg cttttgagca tattattgac
    19141 tatatttgtg aatggaagtt aaagcaaaat gaaaacagaa gaaatattga ggactatata
    19201 actagtttgc tttcagaaaa tttacatgat gagaggatca ttagcacttt attggagcag
    19261 tggcttagtt cgttgcgtaa tacagtaaca gaattaaaag tggttttgcc caagtgtaat
    19321 ttagcactga ggaaaaagtt agaacttgat ctccataaat atcgctcaga tgtcaagatt
    19381 attttaaaat attctgaagg gaataattat atattctgta gtggtaatca agtagtggag
    19441 tttagtcctc aggatgtaat atcaggtgtt aaaatagaac ttgcggaaaa attaacaaaa
    19501 aatgataaaa aatatttcaa agagttagca cataagaaac tgagacaaat tgcagaagac
    19561 ttgttaaaag agaatcctgt taatgattaa tcaaataaat gcaagcaatg ctctgcagca
    19621 aagattaaat agtgaagaat ttgttaattt aaatgagaga ttatcatctt cgcaatcatt
    19681 tgatgagaat ataatctatg aaataatgca atatttctca cagagtgaat taaattccat
    19741 agataatgat gaactgcaca ataagattga acaattattc aattcacgtt ttccttatct
    19801 tacagctgca caaaaaagtt cacttcttaa taaactcata gatgcaaatc aatatgtcga
    19861 tttgcatgag ggattttatg catcattgtc catatataac aatattgatt tctatattaa
    19921 gactacaacc ttcgattcat taattagtgt ctttgatgca gggagagagg cagatgattc
    19981 gacatggtag taataagttg aaaatattta ttttaagtat attgctatta acactgagtg
    20041 ggtgtgcttt aaagtcatca tctaattctg aaaaagaatg gcatattgtt cctgtaagta
    20101 aggattattt ttctattcca aatgatttat tatggtcgtt taatacaacc aataaaagta
    20161 taaatgttta ctctaaatgt attagtggta aggcggttta tagttttaat gcaggtaaat
    20221 tcatgggcaa ctttaatgtt aaggaagtag atgggtgctt catggatgca caaaagatag
    20281 ctatagataa actattttct atgctgaaag acggggttgt tttaaaaggt aataagataa
    20341 atgataccat ccttatagag aaggatgggg aagttaaatt aaaattaatt cgagggatat
    20401 aattgtattg tgagtaaata taaaggtcta aatacaagta atatgtttta catttactct
    20461 agtggacata aaccagttaa cgttgagctt gtaaaagata aagaacgtaa cataattgag
    20521 ctggctccag catggaaggg tttttttttg tccgaaatca aaatataaaa ttcagtgata
    20581 atgtgaacta tcattatcgc tttaacatta atagttgtgc aaaatttctt gctttttggg
    20641 actatttcag tggtgctcta gtagagcata gccatgctga aaaatgtatt catttctatc
    20701 atgagaatga tcttcgggat agttgtaata ccgaatcgat gcttgataag ttaatgttaa
    20761 gattcatctt ttcatctgac cagaatgtaa gtaatgcact ggctatgata cgaatgactg
    20821 agtcatatca tttggttctt tatcttctga gaactattga gaaagaaaag gaggtaagaa
    20881 taaagagtct gacagagcat tatggtgtgt cggaggctta ttttagatct ttatgtagaa
    20941 aagctttagg ggcaaaagtc aaagaacaac tgaacacttg gcggttagta aatggtttat
    21001 tagatgtatt tttgcacaat caaacaatca cttctgctgc catgaataat gggtatgcat
    21061 caacatccca tttttcaaat gagataaaaa cacgactagg cttttctgca agagaattat
    21121 cgaatattac ttttttagtg aaaaaaataa atgaaaaaat ttaatattaa atctttgact
    21181 ctcttgattg tattgttacc attgatagtt aatgctaata atattgactc tcatttatta
    21241 gaacaaaatg acatagcgaa atatgttgct caaagtgata cggtaggatc tttttttgaa
    21301 cgtttttctg cgttattaaa ttatcctatt gttgttagca aacaagctgc aaaaaagaga
    21361 atatctgggg agtttgattt atctaatcca gaagaaatgc ttgaaaaaat gacattactt
    21421 gtgggactca tatggtataa agatggaaat gcattataca tatatgactc tggagaatta
    21481 ataagcaaag ttattttgct ggagaatata tcacttaatt atcttattca gtatctgaag
    21541 gatgctaacc tttatgatca cagatatcct ataagaggaa acattagtga taaaacattc
    21601 tatatatctg gtcctccggc attggttgaa ctggtagcta atacagcaac tttgcttgat
    21661 aagcaggttt cttctattgg gacagataaa gttaattttg gggttataaa attaaaaaat
    21721 acatttgtta gtgacagaac ttataatatg agaggggagg atattgtcat cccaggggtg
    21781 gctactgttg tagaacgttt attaaataat ggtaaggctc tgagtaacag acaagccaaa
    21841 aatgatccga tgccaccctt taatattaca cagaaagtat ctgaggatag taatgacttt
    21901 tcatttagtt cagttaccaa tagttctata ttagaggatg tatcacttat tgcatatcca
    21961 gaaaccaatt ctatattagt caaaggtaat gatcagcaaa tacagattat tcgcgatatt
    22021 atcactcagt tagatgtagc caaacgacat atagaattat cattatggat aatcgatatt
    22081 gataaatctg aattaaataa ccttggcgtt aattggcaag gaacggcttc atttggtgat
    22141 tcgtttggtg catcatttaa tatgagctca tcagcatcga taagcacttt ggacggcaat
    22201 aagtttattg cttcagttat ggcattaaat cagaaaaaga aagcaaatgt agtttcaagg
    22261 ccggtgattt tgacacaaga gaatattccg gctatatttg ataataacag gactttttat
    22321 gtgtcattag ttggtgagcg caattcttcg ttggagcatg ttacgtatgg aacattgata
    22381 aatgttatac ctcgcttttc atctcaggga caaattgaga tgtctttaac gatagaggat
    22441 ggaacaggaa atagtcagtc aaattacaat tataataatg aaaatacatc tgtccttcca
    22501 gaagttggaa ggaccaaaat cagtacaata gcgagagttc cacaaggcaa aagtttgttg
    22561 ataggtggtt atacgcatga aacgaactct aacgaaatag tatctattcc ttttctctcc
    22621 tctattcctg taatcggtaa tgtgttcaag tataaaacaa ggaatatcag taatattgta
    22681 agggtttttc tgattcaacc ccgtgagata aaggagtcaa gttattataa tactgcagaa
    22741 tataagagcc tcatatctga aagagaaata caaaagacta cacaaataat cccatctgaa
    22801 actactttgc tggaagacga aaaatcattg gtttcatact taaattacta actataaagt
    22861 aggtgatgta tgcttgatgt taaaaataca ggagttttta gctctgcatt cattgataag
    22921 ttgaatgcaa tgacaaattc agatgatgga gatgagactg ctgatgcaga gcttgattct
    22981 ggcttggcta atagcaagta tattgactca tctgatgaga tggcttccgc tctttcgtca
    23041 tttataaaca gaagagacct tgagaaactg aaaggaacaa atagtgatag tcaggaacgt
    23101 attttagatg gggaagaaga tgaaattaat cacaagattt ttgatttaaa gagaacttta
    23161 aaagataacc ttcctctaga tcaggatttt atagacagac taaagagata ttttaaagat
    23221 ccaagtgatc aagtcttagc attaagggaa cttttgaatg aaaaagatct tactgctgaa
    23281 caagtcgaat cattaactaa aattattaat gagataatat caggtagtga aaaaagtgtt
    23341 aatgctggaa taaattcagc tatacaggct aaattatttg gcaacaaaat gaaacttgaa
    23401 ccacagcttt tgcgtgcatg ttatcgtggt tttatcatgg ggaacatatc aacaacagat
    23461 cagtatatag aatggcttgg taattttggt tttaatcaca gacatacaat tgtgaatttt
    23521 gtagagcagt cactgattgt agacatggat tctgagaaac cgagctgtaa tgcttatgag
    23581 tttggttttg tgttatctaa attaattgca attaagatga ttagaacttc agatgtaatt
    23641 tttatgaaga aactggaatc ctcaagcttg ctaaaagatg gcagtttaag tgcagagcag
    23701 ctattgctaa ctttattata tatttttcaa tatccaagtg aaagtgagca aattcttact
    23761 tctgttatag acgtatcacg agccagtcat gaggattctg tagtgtatca aacatatcta
    23821 tcttctgtta atgaaagtcc tcatgatata tttaaaagtg aaagtgaaag agaaattgcg
    23881 atcaatattc tacgagagct tgtcacaagt gcatacaaga aagagctttc tagataacag
    23941 gagatgaaag tgatccagtc ttttcttaag caagtaagta ctaagcctga attaattata
    24001 ttagtgctta tggttatgat cattgctatg ttgatcatac cattacctac ataccttgtt
    24061 gattttttaa tagggcttaa tattgtactt gctattctcg tttttatggg atcattttat
    24121 attgaaagaa tattgagttt ttctacattc ccttcggttt tgttgataac gacattattt
    24181 cgtctcgctt tatcaataag tactagtcga ctaattttag ttgatgcgga tgcgggtaaa
    24241 attattacta catttggcca gtttgtcatt ggtgatagtc tggctgtagg ttttgttatt
    24301 ttttcaatag taactgttgt gcagttcatt gttataacaa aaggatctga aagggttgcg
    24361 gaggtagctg ctcgcttttc tcttgacggt atgccgggga aacaaatgag cattgatgcg
    24421 gatttaaagg ctggaattat tgatgccgca ggagctaaag aaagacgcag tattctggaa
    24481 cgtgagagtc aattgtatgg ttcatttgat ggagcaatga agttcattaa aggtgatgca
    24541 attgctggca tcattattat ttttgtcaat ttaataggag gtatttctgt tggtatgagt
    24601 caacatggaa tgtctctatc tggtgcatta tctacttata ccatactaac tattggtgac
    24661 ggattggtct ctcagattcc tgctctgtta atttctataa gtgcaggatt tatcgttaca
    24721 agagttaatg gtgatagcga taatatggga cgtaacataa tgtcccagat atttgggaat
    24781 ccttttgttc tcattgttac atcagctctt gccttggcga tagggatgtt gccaggtttt
    24841 ccgttttttg tttttttcct gatagcagtt actttgacgg ctttattcta ttataaaaag
    24901 gtcgtagaaa aagaaaaaag tctgtctgag tctgattcta gtggctatac tggtacattt
    24961 gatattgata atagccatga ctcatctttg gcaatgatag aaaatctgga tgctattagt
    25021 tcagaaaccg ttcctttaat tttattattt gccgaaaata agataagtgc aaatgatatg
    25081 gaaggtctta ttgaaaggat aagaagtcag ttctttattg attatggtgt caggcttcca
    25141 actattttat atagaacaag caatgagctt aaggtcgatg atattgtttt gttaataaat
    25201 gaggtgcgtg ccgatagttt taatatatac tttgacaaag tgtgtattac agatgaaaat
    25261 ggagatatag atgctctagg tattcctgtt gtttcaactt catataatga acgtgttatt
    25321 tcttgggtag acgtttcata tacagaaaat ctaactaata ttgatgctaa aattaaaagt
    25381 gctcaagatg aattttatca ccagttgtca caagctttat taaacaacat aaatgagatt
    25441 tttggtatac aagaaacaaa aaatatgtta gatcagtttg aaaatcggta tcctgatcta
    25501 ttaaaggaag tcttccgaca tgtgactata cagagaattt ctgaggtatt acaaagattg
    25561 cttggagaaa atatttctgt tcgcaattta aaacttatta tggagtcttt ggcgctttgg
    25621 gctcccagag aaaaagatgt cataacatta gttgaacatg tccgtgcatc actttctagg
    25681 tatatttgta gtaaaatagc tgtttctggt gagattaaag ttgtgatgct ttccggatat
    25741 attgaggatg caataagaaa agggataagg caaacctctg gtggctcttt cttgaatatg
    25801 gatatagagg tttcggatga ggtaatggaa actttagcac atgctttgag agaattgaga
    25861 aatgcaaaaa aaaatttcgt tcttttggta tcagtagata tacgtaggtt tgttaaaaga
    25921 cttatagata acagatttaa gagtatactc gttatatcgt atgctgagat tgatgaagca
    25981 tataccatta atgtattaaa gactatttag tgaggtttaa atatgagtaa cattaattta
    26041 gttcaattag ttagagatag tcttttcacg attggttgtc ctccatcaat tattacagat
    26101 ttagacagcc attcagcgat taccatttct ttggatagta tgcctgctat taatatagct
    26161 cttgtcaatg agcaggttat gttatgggct aatttcgatg caccaagtga tgtaaaactt
    26221 cagtcatctg cttataacat attaaattta atgttaatga actttagtta tagcattaat
    26281 gagctggtag agcttcatcg ttctgatgag tacttacagt taagagttgt tattaaagat
    26341 gactacgttc acgatgggat tgtttttgca gagattctgc atgagtttta tcagaggatg
    26401 gaaatcttaa atgaggtctt ataatcaatg agctatataa aattgctcac tcaattatct
    26461 tttcctaata gaatctcggg gccaatcttg gaaacaagtc ttagcgatgt ttcgattggt
    26521 gagatttgta acattcaggc tggaattgaa agtaatgaaa ttattgcaag agctcaggtt
    26581 gtaggatttc atgatgaaaa aacaatatta agcttgattg gaaattctcg tggactttca
    26641 cggcaaacgt tgattaagcc cactgcccag tttcttcata cgcaagtcgg ccgtggatta
    26701 ttgggagcag tagtcaatcc tttaggggag gttactgata agtttgctgt tacggataac
    26761 agtgaaattc tttatcgacc tgtagataat gctcctccgc tatatagtga aagggctgca
    26821 attgagaagc cttttttaac aggtgttaag gttattgatt ctttactcac gtgtggtgaa
    26881 ggacagcgaa tggggatttt tgcgtcagct ggttgtggca aaacttttct catgaatatg
    26941 ctcattgaac atagtggtgc tgatatatat gttattgggt taattggtga gcgaggtcga
    27001 gaggttacag aaacggttga ttatttgaaa aactctgaga aaaaaagcag gtgtgtttta
    27061 gtatatgcaa cttcggatta ctcttcggtt gatcgttgta atgctgcata tatagccact
    27121 gctatagccg aattttttag gactgaagga cataaagtag cgctttttat tgattcatta
    27181 acaaggtatg ccagagcatt acgtgatgtg gccttagccg ctggagaatc acctgccaga
    27241 agaggctatc cggtttcggt ttttgatagc ttacccagac ttcttgaaag gccaggaaag
    27301 ttaaaggcag gtggctctat tactgcattt tacactgttc ttttggagga tgatgatttt
    27361 gctgatccat tagctgaaga ggtaagatcc attttagatg gacatatata tttgagcaga
    27421 aatctagccc aaaaaggaca atttcctgca attgattcct taaaaagtat aagcagggta
    27481 tttacacagg ttgttgatga aaaacatcgt attatggcca ctgcatttcg ggagctactt
    27541 tctgaaatag aagagctaag gacaattatt gactttggtg aatacaaacc gggggagaat
    27601 gcctctcagg ataaaatcta caacaaaata tctgttgttg agagttttct gaagcaagat
    27661 tatcgactcg gttttactta tgagcagaca atggagcttc ttggtgaaac aattagataa
    27721 ggttttaaaa atcaaagata aatatcaacg gtctgttaaa ttaattgaag cacacatatt
    27781 aacactaaaa aaaaaactct ttgtatcgag atgtggaggc attagataaa aggattatat
    27841 acttcctgca actggagaat gacttggaac ctgtaggcgc tcagagtgtt agtcagcttt
    27901 tcaatacaag acgtaagatc gctatagtaa aaaagcatat tatccaatat cagtctgaac
    27961 gaattcttct aaagggaaga attgaagaaa ttcaaaaaga tattgatgag gcaaatgctt
    28021 ctaaaagaaa actgcttcat aaagagagta aaatatgtaa acggattggc ttgattaaaa
    28081 gaaataactt tgccaaacag ttgatacttg atgagttatc acaagaggat atgaagtatg
    28141 gcattagata atataaacct aaattttagt agtgacaaac agatagaaaa atgtgagaaa
    28201 ctatcttcaa tagataatat tgatagtctc gttttgaaga agaagaggaa ggttgaaatt
    28261 cctgagtact ctttaattgc atctaactat tttactattg ataagcactt tgaacataag
    28321 catgataaag gagaaattta tagtggcatt aaaaatgcgt tcgaacttag aaacgaacga
    28381 gcgacatatt ctgatattcc agaatcaatg gccattaaag aaaatatttt gataccagat
    28441 caagatatca aagcaaggga aaaaataaat atcggcgata tgagggggat cttttcatat
    28501 aataagagtg gaaatgcaga caagaacttc gaaagaagtc atacttcttc tgtaaaccct
    28561 gataatctgc tagaatctga taatagaaat ggtcaaattg gtttaaaaaa tcatagcttg
    28621 tctattgata agaatattgc tgacatcatt tctttactaa atggaagtgt tgctaaatca
    28681 tttgagctgc ctgtaatgaa taaaaatact gcagacataa ccccatccat gtcattgcaa
    28741 gaaaaatcaa tagttgaaaa tgataaaaat gtttttcaaa aaaatagtga aatgacttac
    28801 cactttaaac agtggggggc tggacattct gttagtattt cagtggagtc tggttctttt
    28861 gttctaaaac cgtcagatca atttgtagga aataaacttg acttaatttt gaaacaagat
    28921 gctgagggta attacagatt tgatagcagt caacataata aggggaataa aaataatagt
    28981 acaggatata atgaacagag tgaagaagaa tgctaagaat taaacatttt gacgctaacg
    29041 aaaaactaca gattttatat gcaaagcaac tctgcgagcg tttttcgatt cagacattca
    29101 aaaataaatt tacaggcagt gaaagtttag tcactcttac ttccgtgtgt ggggattggg
    29161 taattcgtat tgatacatta tcttttttga aaaaaaaata cgaggtattt tcaggatttt
    29221 ctacacaaga atctttactg catttatcaa aatgtgtctt tatagagtcg tcatctgtat
    29281 tttcgattcc agaactgtct gataagatta ctttccggat cacgaatgaa atccagtatg
    29341 caactactgg gagtcattta tgctgttttt cctcttcttt aggtattatt tattttgaca
    29401 agatgccggt attacgtaat caagtttctc ttgacttatt gcatcatctt ttagagtttt
    29461 gcttaggttc atctaatgta aggctggcta ctttaaaaag aattcgtact ggtgatataa
    29521 tcatagttca gaaactttat aatttattat tgtgtaatca agttattatt ggggattata
    29581 ttgtgaatga taataatgag gcaaaaatta atctgtcaga aagtaatggt gagtcagatc
    29641 acacagaagt ttctttggca ttattcaatt atgatgatat caatgtaaaa gtggacttta
    29701 tccttttaga aaaaaagatg acaatcaatg aactaaaaat gtatgtagaa aacgaattat
    29761 tcaagtttcc cgatgacata gttaaacatg taaatattaa agtaaatggt tctttggttg
    29821 ggcatgggga acttgtttct attgaggatg gttatggtat cgagattagt tcttggatgg
    29881 taaaggagta atctcatgct gagtgatatg tccctcatcg ctacactttc tttttttacg
    29941 ctattaccat ttttagttgc tgctggtact tgttatataa agttttctat tgtttttgta
    30001 atggtacgaa atgcacttgg tttgcagcag gttccatcaa atatgactct caatggtatt
    30061 gcattgatta tggctttgtt cgtgatgaaa cccattattg aagctggtta tgaaaattat
    30121 ctaaatggcc cgcaaaaatt tgatacaata tcagatattg tccgtttttc tgattctggc
    30181 ttgattgaat acaagcaata cttgaaaaag catacagatc ttgagttggc acgttttttc
    30241 caaaggtctg aagaagaaaa tgctgattta aagagtgcag agaataatga ttattcattg
    30301 ttttccctct tgcctgcata tgcgctaagt gaaattaaag atgcgttcaa aataggtttt
    30361 tatttatatt tgccatttat tgttgttgat cttgttattt caagcatttt acttgcactt
    30421 ggtatgatga tgatgagtcc aatcacaata tcagtaccaa taaaacttgt attatttgtt
    30481 gcgcttgatg ggtgggggat cctgtctaag gccttgattg aacaatatat caatgttcct
    30541 gcttagatga tggaggtaat gtgtctgata tagtttatat gggtaataag gctctttatt
    30601 taatccttat cttttcctta tggccagtag gtatagctac ggttattgga ttaactattg
    30661 gtttattaca gacagtgact caacttcaag agcagacact tccttttggt ataaagctta
    30721 taggtgtctc aatatctttg ctacttcttt ctggatggta tggtgaggtt ttattgtctt
    30781 tttgtcatga aataatgttt ttaattaaga gtggggtttg atggacattt caagctggtt
    30841 cgaaagtatt catgtgtttt taatactcct gaacggcgtt ttttttagat tggctccatt
    30901 atttttcttt cttccatttt taaataacgg tataatttct ccatctatta gaatacctgt
    30961 gatttttctt gttgcatcag gattaattac ttctggtaag gtagacatag gttcttctgt
    31021 ttttgaacat gtttatttcc ttatgttcaa ggaaataatt gttggcctcc ttctctcttt
    31081 ttgcttgtct cttccctttt ggatatttca tgctgttggt agtattattg acaaccagcg
    31141 tggggcaacg cttagtagtt caattgatcc tgccaatggt gttgatacgt ctgaattggc
    31201 aaaatttttc aatctttttt ctgcagttgt atttctatac agtggtggaa tggtctttat
    31261 tttagaatcc atacaattgt cttataatat atgcccgtta ttttctcaat gttctttccg
    31321 tgtctcaaat atcttaacat ttctgacttt attggcaagt caggctgtta ttttagccag
    31381 tcctgttatg atagtattgt tactatcaga agtattactt ggtgtattat cgagatttgc
    31441 tccgcagatg aatgcttttt ccgtatcatt aactattaaa agtttacttg caatatttat
    31501 tattttcatc tgttcttcta ctatttactt ttctaaagtt caatttttcc tcggtgaaca
    31561 taaatttttc acaaatctat ttgttagata aaatattatg gcaaataaaa cagaaaagcc
    31621 gacacctaaa aaactaaagg atgccgcaaa aaaaggacag tcatttaaat ttaaggattt
    31681 aacgacagtt gttattattc tggtagggac atttactata atatcattct tttccttaag
    31741 tgatgtaatg ctcttataca gatatgtaat aattaatgac ttcgaaatta atgagggtaa
    31801 atactttttt gcagtggtta ttgtcttttt taagataatt ggcttcccac tttttttctg
    31861 tgttctttcg gctgtgttgc caacattggt tcaaacaaag tttgttcttg cgactaaagc
    31921 tatcaagatt gatttttcag tattaaaccc tgttaaaggg ttaaaaaaaa tatttagtat
    31981 aaagacaata aaagaatttt tcaaaagcat tctgcttctt attattctag cattaacaac
    32041 ctatttcttt tggattaatg accgaaaaat aattttttct caggtgtttt ctagtgttga
    32101 tggcttatat cttatttggg gggggctatt taaggatata atattatttt tcttagcatt
    32161 ttctattttt gttattattc ttgactttgt gattgagttc attttataca tgaaagatat
    32221 gatgatggat aaacaggaga taaaaagaga atatatagag caagagggac actttgagac
    32281 aaagtcgaga aggcgtgagt tgcatatcga gattctttca gagcagacta aatctgatat
    32341 acgtaattca aaattagtgg taatgaaccc gactcatatt gcaattggta tttattttaa
    32401 tccagaaata gcgcctgcac cttttatttc tctcattgaa actaaccagt gtgccttggc
    32461 tgtcagaaaa tatgcaaatg aagttggtat accaactgtg cgtgatgtga aattagctag
    32521 aaaactatat aaaacacata caaaatatag ttttgttgat tttgaacact tggatgaagt
    32581 cctacgtctt attgtttggc ttgagcaggt tgaaaacact cattaataag taaaggagat
    32641 gtgttatatg ggagttaatt tctgtaataa aataggtatt gatcagtctg aatttgaaat
    32701 agaatcttcc atcattaact ccattgctaa tgaggtattg aacccaatat ctttccttag
    32761 caacaaggat ataataaatg ttttactcag aaagatttca tctgaatgtg acctggttag
    32821 aaaagacatt tatcgttgtg ctcttgagtt ggtcgttgaa aaaacacctg atgatttata
    32881 atcattcata ataactcttt tgttgatata aatatttttg ttgaagatat ttatgtagtc
    32941 acaggatcaa ttgtagaaaa ttgttatgtt tttgttagga actgaactaa ataatatatg
    33001 ataagacagc aaaaacgact gaccataatc cttcttttat taggagttga taagagagac
    33061 tattcatcct gtaatgttaa aactctgtta tatagtattc gcgattatgc aaagtctgta
    33121 aatgatcatg agatactaac cgagagtaat cgtttattat ctcattgcat ttcagatagt
    33181 aacggagctt tctttaaaag tagtaaatac gttcccctta agtacttacg taaaaggaga
    33241 atagcacgaa agataccaaa tgattagcac tttgctagta agcttgctgg taaactatat
    33301 tgaccgttgg gtttgttttg agactgtaat ttaaattgtg taattgcctg tttttgatat
    33361 gtttactcca acaacggaga caggtaaatt atggacgaaa agaagcttaa agcccttgcg
    33421 gctgaactgg ctaaaggcct caaaactgag gccgacctca atcagttttc ccgtatgctg
    33481 acgaaatatc ccggctctta aaacgatagt ggctcaggct ttcatttttc agcgttcccc
    33541 agaagatttc catcggagcg ttgtcgtaac agttaccttt acgcgacatt gatgttttca
    33601 gaccagactg ctcctgtatg acccggtaat cgtatgcgca gtactgtgaa cctcgatcgg
    33661 tgtggtggat tagcccggca ggtgggcgct ggctcctgag cgccataaac agggctttac
    33721 ccgtcaattc tttcgtcatg cgctctccca tggcgtaacc gacaatttcg cacgtataaa
    33781 catctttgac gccggcgaga tacagccatc cttcccgggt ggcaacatac gttatatctg
    33841 cgacccagac ctgattaggt gctgtgggcg taaagttctg attcagcaga ttcggcgtaa
    33901 ccggcggatt gtggtcagag
//
LOCUS       DAJVSY010000027        32961 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.027, whole genome shotgun sequence.
ACCESSION   DAJVSY010000027 DAJVSY010000000
VERSION     DAJVSY010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 32961)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32961)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32961
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.027"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..260
                     /locus_tag="OQQ19_001168"
     CDS             <1..260
                     /locus_tag="OQQ19_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="prepilin peptidase-dependent pilin"
                     /protein_id="HCS1802864.1"
                     /translation="GLDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNGLSV
                     VMTPGWDNANGVTGWARNCNIQSDSALQQACEDVFRFDDAN"
     gene            270..1644
                     /gene="gspE"
                     /locus_tag="OQQ19_001169"
                     /pseudo
     CDS             270..1644
                     /gene="gspE"
                     /locus_tag="OQQ19_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414649.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspE"
     gene            1634..2836
                     /gene="hofC"
                     /locus_tag="OQQ19_001170"
     CDS             1634..2836
                     /gene="hofC"
                     /locus_tag="OQQ19_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein transport protein HofC"
                     /protein_id="HCS1802865.1"
                     /translation="MASKQLWRWHGITGDGNAQDGMLWAESRALLLMALQQQMVTPLS
                     LKRIAINSAQWRGDKSAKVIHQLATLLKAGLTLSEGLALLAGQHPSKQWQALLQSLAH
                     DLEQGIAFSNALLPWSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVK
                     SALRYPIIILAMAIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSW
                     LLVLFGFLLAIANKLLMRRPTWLIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSA
                     GITFLQGVESVRETMRCPYWVQLLTQIQHDISNGHPIWLALKNTGEFSPLCLQLVRTG
                     EASGSLDLMLDNLAHHHRDNTMALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHL
                     GDAMSGMG"
     gene            complement(2871..3914)
                     /gene="guaC"
                     /locus_tag="OQQ19_001171"
     CDS             complement(2871..3914)
                     /gene="guaC"
                     /locus_tag="OQQ19_001171"
                     /EC_number="1.7.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008461816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP reductase"
                     /protein_id="HCS1802866.1"
                     /translation="MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSDQSW
                     SGVPIIAANMDTVGTFSMASALASFDILTAVHKHYSVEEWQAFINNSSADVLKHVMVS
                     TGTSDADFEKTKQILDLNPALNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVV
                     TGEMCEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVS
                     DGGCTTPGDVAKAFGGGADFVMLGGMLAGHEESGGRIVEENGEKFMLFYGMSSESAMK
                     RHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFI
                     RVQEQENRIFNNL"
     gene            complement(4070..4114)
                     /locus_tag="OQQ19_001172"
     CDS             complement(4070..4114)
                     /locus_tag="OQQ19_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802867.1"
                     /translation="MIIKTLKMSARKRN"
     gene            4139..4759
                     /gene="coaE"
                     /locus_tag="OQQ19_001173"
     CDS             4139..4759
                     /gene="coaE"
                     /locus_tag="OQQ19_001173"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HCS1802868.1"
                     /translation="MRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGA
                     PALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQ
                     ATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQA
                     TREARLAVADDVIDNNGAPDAIASDVARLHAHYLQLASQFVSQEKP"
     gene            4759..5502
                     /gene="zapD"
                     /locus_tag="OQQ19_001174"
     CDS             4759..5502
                     /gene="zapD"
                     /locus_tag="OQQ19_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapD"
                     /protein_id="HCS1802869.1"
                     /translation="MQTQVLFEHPLNEKMRTWLRIEFLIQQLTVNLPIVDHAGALHFF
                     RNVSELLDVFERGEVRTELLKELDRQQRKLQTWIGVPGVDQSRIEALIQQLKAAGSVL
                     ISAPRIGQFLREDRLIALVRQRLSIPGGCCSFDLPTLHIWLHLPQAQRDSQVETWIAS
                     LNPLTQALTMVLDLIRQSAPFRKQTSLNGFYQDNGGDADLLRLNLSLDSQLYPQISGH
                     KSRFAIRFMPLDSENGQVPERLDFELACC"
     gene            5512..5709
                     /gene="yacG"
                     /locus_tag="OQQ19_001175"
     CDS             5512..5709
                     /gene="yacG"
                     /locus_tag="OQQ19_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HCS1802870.1"
                     /translation="MSETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEE
                     KRIPSSGDLSESDDWSEEPKQ"
     gene            complement(5816..6205)
                     /gene="mutT"
                     /locus_tag="OQQ19_001176"
     CDS             complement(5816..6205)
                     /gene="mutT"
                     /locus_tag="OQQ19_001176"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HCS1802871.1"
                     /translation="MKKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGE
                     TPEQAVVRELQEEVGITPQHFSLFEKLAYEFPDRHITLWFWLVESWEGVPWGKEGQPG
                     EWMSLVGLNADDFPPANEPVIAKLKRL"
     gene            complement(6265..8970)
                     /gene="secA"
                     /locus_tag="OQQ19_001177"
     CDS             complement(6265..8970)
                     /gene="secA"
                     /locus_tag="OQQ19_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HCS1802872.1"
                     /translation="MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELK
                     GKTAEFRARLEKGEVLENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEM
                     RTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPG
                     MPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDE
                     ARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTE
                     RGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVI
                     IVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTG
                     TADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQ
                     PVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAAVTIATNMAG
                     RGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRR
                     IDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVT
                     KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDVSDVSETINSIRED
                     VFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKEPELHEETLRERIL
                     AQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKD
                     PKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELEQQRRMEAERLAQMQQ
                     LSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHGRLQ"
     gene            complement(9032..9544)
                     /gene="secM"
                     /locus_tag="OQQ19_001178"
     CDS             complement(9032..9544)
                     /gene="secM"
                     /locus_tag="OQQ19_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414639.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secA regulator SecM"
                     /protein_id="HCS1802873.1"
                     /translation="MSGILTRWRQFGKRYFWPHLLLGMVAASLGLPALSNAAEPNVPA
                     KATTRNHEPSAKVNFGQLALLEANTRRPNSNYSVDYWHQYAIRTVIRHLSFAMAPQTL
                     PVAEESLPLQAQHLALLDTLSALLTQEGTPSEKGYRIDYAHFTPQAKFSTPVWISQAQ
                     GIRAGPQRLT"
     gene            complement(9775..10692)
                     /gene="lpxC"
                     /locus_tag="OQQ19_001179"
     CDS             complement(9775..10692)
                     /gene="lpxC"
                     /locus_tag="OQQ19_001179"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HCS1802874.1"
                     /translation="MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDL
                     NPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIP
                     IMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTID
                     FNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVV
                     DDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFIAYKSGHALNNKLLQAVL
                     AKQEAWEYVTFQDDAELPLTFKAPSAVLA"
     gene            complement(10793..11944)
                     /gene="ftsZ"
                     /locus_tag="OQQ19_001180"
     CDS             complement(10793..11944)
                     /gene="ftsZ"
                     /locus_tag="OQQ19_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HCS1802875.1"
                     /translation="MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNT
                     DAQALRKTAVGQTIQIGSGITKGLGAGANPEVGRNAADEDRDALRAALEGADMVFIAA
                     GMGGGTGTGAAPVVAEVAKDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSL
                     ITIPNDKLLKVLGRGISLLDAFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMS
                     EMGYAMMGSGVASGEDRAEEAAEMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFE
                     TVGNTIRAFASDNATVVIGTSLDPDMNDELRVTVVATGIGMDKRPEITLVTNKQVQQP
                     VMDRYQQHGMAPLTQEQKPVAKVVNDNAPQTAKEPDYLDIPAFLRKQAD"
     gene            complement(12005..13267)
                     /gene="ftsA"
                     /locus_tag="OQQ19_001181"
     CDS             complement(12005..13267)
                     /gene="ftsA"
                     /locus_tag="OQQ19_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HCS1802876.1"
                     /translation="MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR
                     GMDKGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEE
                     EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHL
                     ITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVLTEDERELGVCVVDIGGGTMDI
                     AVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVE
                     VPSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVL
                     TGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKESHLN
                     GEAEVEKRVTASVGSWIKRLNSWLRKEF"
     gene            complement(13264..14094)
                     /gene="ftsQ"
                     /locus_tag="OQQ19_001182"
     CDS             complement(13264..14094)
                     /gene="ftsQ"
                     /locus_tag="OQQ19_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ"
                     /protein_id="HCS1802877.1"
                     /translation="MSQAALNTRNSEEEVSSRRNNGTRLAGILFLLTVLTTVLVSGWV
                     VLGWMEDAQRLPLSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQR
                     LPWIKQVSVRKQWPDELKIHLVEYVPIARWNDQHMVDAEGNTFSVPPDRTSKQVLPML
                     YGPEGSANEVLQGYREMGQMLAKDRFTLKETAMTARRSWQLTLNNDIKLNLGRGDTMK
                     RLARFVELYPVLQQLAQTDGKRISYVDLRYDSGAAVGWAPLPPEESTQQQNQAQAEQQ
                     "
     gene            complement(14096..15016)
                     /gene="ddlB"
                     /locus_tag="OQQ19_001183"
     CDS             complement(14096..15016)
                     /gene="ddlB"
                     /locus_tag="OQQ19_001183"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HCS1802878.1"
                     /translation="MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE
                     VDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL
                     LWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE
                     NALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLS
                     DETQYFCPAGLDASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG
                     MTSHSLVPMAARQAGMSFSQLVVRILELAD"
     gene            complement(15009..16484)
                     /gene="murC"
                     /locus_tag="OQQ19_001184"
     CDS             complement(15009..16484)
                     /gene="murC"
                     /locus_tag="OQQ19_001184"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HCS1802879.1"
                     /translation="MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGY
                     QISGSDLAPNPVTQQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEAR
                     IPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAG
                     VHARLGHGRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFL
                     HNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLR
                     QDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFLGTGRRFDFLGEF
                     PLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYD
                     DFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEML
                     APVLTGNDLILVQGAGNIGKIARSLAEIKLKPQTPEEEQHD"
     gene            complement(16538..17605)
                     /gene="murG"
                     /locus_tag="OQQ19_001185"
     CDS             complement(16538..17605)
                     /gene="murG"
                     /locus_tag="OQQ19_001185"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HCS1802880.1"
                     /translation="MSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADR
                     MEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGM
                     GGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGN
                     PVRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQS
                     GKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPA
                     LFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERAR
                     AASIPDATERVANEVSRAARA"
     gene            complement(17602..18846)
                     /gene="ftsW"
                     /locus_tag="OQQ19_001186"
     CDS             complement(17602..18846)
                     /gene="ftsW"
                     /locus_tag="OQQ19_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsW"
                     /protein_id="HCS1802881.1"
                     /translation="MRLSLPRLKMPRLPGFSILVWISTALKGWVMGSREKDTDSLIMY
                     DRTLLWLTFGLAAIGFIMVTSASMPIGQRLTNDPFFFAKRDGVYLILAFILAIITLRL
                     PMEFWQRYSATMLLGSIILLMIVLVVGSSVKGASRWIDLGLLRIQPAELTKLSLFCYI
                     ANYLVRKGDEVRNNLRGFLKPMGVILVLAVLLLAQPDLGTVVVVFVTTLAMLFLAGAK
                     LWQFIAIIGMGISAVVLLILAEPYRIRRVTAFWNPWEDPFGSGYQLTQSLMAFGRGEL
                     WGQGLGNSVQKLEYLPEAHTDFIFAIIGEELGYVGVVLALLMVFFVAFRAMSIGRKAL
                     EIDHRFSGFLACSIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIM
                     MLLRIDYETRLEKAQAFVRGSR"
     gene            complement(18846..20162)
                     /gene="murD"
                     /locus_tag="OQQ19_001187"
     CDS             complement(18846..20162)
                     /gene="murD"
                     /locus_tag="OQQ19_001187"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HCS1802882.1"
                     /translation="MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL
                     DKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCRE
                     AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAECELYVLELS
                     SFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALT
                     MPIRGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAA
                     LALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGL
                     QVDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVAEQTETME
                     QAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKELG"
     gene            complement(20165..21247)
                     /gene="mraY"
                     /locus_tag="OQQ19_001188"
     CDS             complement(20165..21247)
                     /gene="mraY"
                     /locus_tag="OQQ19_001188"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HCS1802883.1"
                     /translation="MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRM
                     IAHLQKLSFGQVVRNDGPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPYVWCVL
                     VVLVGYGVIGFVDDYRKVVRKDTKGLIARWKYFWMSVIALGVAFALYLAGKDTPATQL
                     VVPFFKDVMPQLGLFYILLAYFVIVGTGNAVNLTDGLDGLAIMPTVFVAGGFALVAWA
                     TGNMNFASYLHIPYLRHAGELVIVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGA
                     LGIIAVLLRQEFLLVIMGGVFVVETLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWP
                     EPRVIVRFWIISLMLVLIGLATLKVR"
     gene            complement(21241..22599)
                     /gene="murF"
                     /locus_tag="OQQ19_001189"
     CDS             complement(21241..22599)
                     /gene="murF"
                     /locus_tag="OQQ19_001189"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HCS1802884.1"
                     /translation="MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALK
                     GERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARV
                     VALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELG
                     ANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMN
                     ADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP
                     LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYN
                     ANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGK
                     QSHAISTASGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQENG
                     TC"
     gene            complement(22596..24083)
                     /gene="murE"
                     /locus_tag="OQQ19_001190"
     CDS             complement(22596..24083)
                     /gene="murE"
                     /locus_tag="OQQ19_001190"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HCS1802885.1"
                     /translation="MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGH
                     QADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFY
                     HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTG
                     SAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDM
                     EHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKV
                     IDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNLLLALATLLALGYPLADLLKTAA
                     RLQPVCGRMEVFTVPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK
                     GKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTC
                     AVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGVIA"
     gene            complement(24070..25836)
                     /gene="ftsI"
                     /locus_tag="OQQ19_001191"
     CDS             complement(24070..25836)
                     /gene="ftsI"
                     /locus_tag="OQQ19_001191"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000642204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase FtsI"
                     /protein_id="HCS1802886.1"
                     /translation="MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAW
                     LQVISPDMLVKEGDMRSLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAG
                     GISVGDRWKALANALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIH
                     LREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVI
                     EDISSTDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMA
                     NSPSYNPNNLSGTPKEAMRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPY
                     RINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLG
                     LVGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVD
                     PPVPGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYI
                     NKYIAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPD
                     ALTTGDKNEFVINQGEGTGGRS"
     gene            complement(25852..26217)
                     /gene="ftsL"
                     /locus_tag="OQQ19_001192"
     CDS             complement(25852..26217)
                     /gene="ftsL"
                     /locus_tag="OQQ19_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HCS1802887.1"
                     /translation="MISRVTEALSKVKGSMGSHERHALPGVIGDDLLRFGKLPLCLFI
                     CIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIAT
                     EKLQMQHVDPSQENIVVQK"
     gene            complement(26214..27155)
                     /gene="rsmH"
                     /locus_tag="OQQ19_001193"
     CDS             complement(26214..27155)
                     /gene="rsmH"
                     /locus_tag="OQQ19_001193"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HCS1802888.1"
                     /translation="MMENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQ
                     LGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDL
                     GVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERF
                     AKRIARAIVERNREQPMTRTKELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEE
                     IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKL
                     GGRQLRALGKLMPGEEEVAENPRARSSVLRIAERTNA"
     gene            complement(27157..27615)
                     /gene="mraZ"
                     /locus_tag="OQQ19_001194"
     CDS             complement(27157..27615)
                     /gene="mraZ"
                     /locus_tag="OQQ19_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HCS1802889.1"
                     /translation="MFRGATLVNLDSKGRLSVPTRYREQLLENAAGQMVCTIDIHHPC
                     LLLYPLPEWEIIEQKLSRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHA
                     GLTKEVMLVGQFNKFELWDETTWHQQVKEDIDAEQLATGDLSERLQDLSL"
     gene            complement(28217..29221)
                     /gene="cra"
                     /locus_tag="OQQ19_001195"
     CDS             complement(28217..29221)
                     /gene="cra"
                     /locus_tag="OQQ19_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolite repressor/activator"
                     /protein_id="HCS1802890.1"
                     /translation="MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVRE
                     HNYHPNAVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQ
                     PDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANAPFPIVALDRALDREHFTSVV
                     GADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYAN
                     SYEREAAAQLFEKWLETHLMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDN
                     ELLDFLQCPVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS
                     "
     gene            complement(29303..29389)
                     /locus_tag="OQQ19_001196"
     CDS             complement(29303..29389)
                     /locus_tag="OQQ19_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fruR/shl operon leader peptide"
                     /protein_id="HCS1802891.1"
                     /translation="MCNLQPNMSRWAFFAKSVGTWNKSSCRS"
     gene            complement(29401..29892)
                     /gene="ilvN"
                     /locus_tag="OQQ19_001197"
     CDS             complement(29401..29892)
                     /gene="ilvN"
                     /locus_tag="OQQ19_001197"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001563086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HCS1802892.1"
                     /translation="MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLS
                     RMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVK
                     RNTEIFRGQIIDVTPSLYTVQLAGTSDKLDAFLASIREVAKIVEVARSGVVGLSRGDK
                     IMR"
     gene            complement(29895..31619)
                     /gene="ilvI"
                     /locus_tag="OQQ19_001198"
     CDS             complement(29895..31619)
                     /gene="ilvI"
                     /locus_tag="OQQ19_001198"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020079613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 large subunit"
                     /protein_id="HCS1802893.1"
                     /translation="MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGID
                     HVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQ
                     VATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVD
                     LPKDILNPANKLPYVWPESVSMRSYNPTTTGHKGQIKRALQTLVVAKKPVVYVGGGAI
                     MAGCHQQLKETVEALNLPVVSSLMGLGAFPATHRQALGMLGMHGTYEANMTMHNADVI
                     FAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLEL
                     LSQESAHQPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLTKGDAYVT
                     SDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGS
                     IQMNIQELSTALQYELPVLVVNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLA
                     EAYGHVGIQISHPHELESKLSEALEQVRNNRLVFVDVTVDGSEHVYPMQIRGGGMDEM
                     WLSKTERT"
     gene            31738..31782
                     /locus_tag="OQQ19_001199"
     CDS             31738..31782
                     /locus_tag="OQQ19_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802894.1"
                     /translation="MKRNDKILHYEGLN"
     gene            complement(31937..32881)
                     /gene="leuO"
                     /locus_tag="OQQ19_001200"
     CDS             complement(31937..32881)
                     /gene="leuO"
                     /locus_tag="OQQ19_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LeuO"
                     /protein_id="HCS1802895.1"
                     /translation="MPEVQTDHSETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAAH
                     VLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPG
                     SGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQ
                     ETEFVISYEDFHRPEFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDR
                     FASFSQPWYDTVDKQASIAYQGMAMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQVL
                     PLPLKQNSRTCYLSWHEAAGRDKGHQWMEEQLVSICKR"
BASE COUNT         7914 a         9255 c         8019 g         7773 t
ORIGIN      
        1 gtggattaga tacctgcgac ggtggcagca atggcattcc ctcgcctacc accacccgct
       61 atgtttcagc catgagtgtg gcaaaaggcg tggtgtcgct gaccgggcaa gaaagtctca
      121 atggactaag cgtcgtcatg acgccaggtt gggataacgc aaacggcgtc accggctggg
      181 cgcgcaactg caatattcaa agtgacagcg cattgcagca agcctgcgaa gatgtcttcc
      241 gctttgatga cgccaactaa ggagcggcaa tgaatattcc acagctcacc gccctgtgtc
      301 tgcgttatca gggagtcttg ctggatgcca gcgaagaggt ggttcatgtt gcggtagtcg
      361 atgcaccttc gcatgagttg ctggacgcat tgcatttcgc taccaccaaa cgtattgaga
      421 tcacctgctg gacgcgccaa caaatggaag gccacgccag tcgcacacaa cagacattgc
      481 ccgtagctgt tcaggagaag catcagtcga aagcagagtt gctgactcga acgttacaat
      541 ctgcgctgga acaacgtgcg tctgatattc atatcgaacc agcggacaat gcctaccgca
      601 tccgcttgcg tatcgacggc gtattgcatc ctttaccgga tgtttcaccg gatgccggag
      661 tcgcattaac cgccagatta aaagtgctgg gaaacctgga tattgcggaa catcgcctgc
      721 cgcaggacgg gcaattcact gtcgaactgg caggaaacgc cgtctcattt cgtattgcga
      781 ccttaccatg tcggggtggt gaaaaggtgg tattaaggtt gttacagcag gtgaaccagg
      841 cactggatgt taacacgctg ggaatgcagc cgttacaact ggcggacttt gctcatgcct
      901 tgcaacaacc acagggactg gtgctggtaa ctggccctac aggcagcggc aaaacggtca
      961 cgctttatag tgccctgcaa aagctgaata ccgctgacat taatatttgt agcgtcgaag
     1021 atccggttga gatccccata gccggactaa accagacgca aatccatccg cgtgccgggc
     1081 tcacctttca gggcgttttg cgtgcgttat tgcgccagga tcctgacgtc atcatgatcc
     1141 gatggcgaaa cggcagaaat tgccattaaa gccgcgcaaa ccggtcacct ggtgttgtct
     1201 accctacaca ctaattccac ctgcgaaacg ctggtacgtt tacagcaaat gggagtcgcc
     1261 cgctggatgc tctcatcagc gcttacgctg gtaatagccc agcgtctggt acgtaaattt
     1321 tgcccacatt gtcgccagca gcaaggggag cccatccata ttccagacaa tgtatggccg
     1381 tcgccgctgc cccactggca ggcacccggt tgtgtacatt gctaccacgg tttttatggt
     1441 cgtaccgcct tgtttgaagt cctgcccatt acaccagcca tacgccagct tatttccgct
     1501 aataccgacg ttgaatcgct ggaaacgcac gcacgacagg cgggtatgcg tacgcttttt
     1561 gaaaacggct gcctagccgt ggagcaaggc ttaaccacct ttgaagagtt aatccgcgta
     1621 ctggggatgc cgcatggcga gtaagcaact ctggcgctgg catggcataa ccggcgacgg
     1681 caatgcgcaa gatgggatgc tatgggcaga gagccgtgct ttgctgctca tggcactaca
     1741 gcaacagatg gttaccccac ttagcctgaa gcgaatcgcc atcaattctg cgcagtggcg
     1801 aggagataaa agcgcgaaag tcattcatca actggcgacg ctactcaaag ccgggttaac
     1861 gctttctgaa gggctggcac tgctggcggg acagcatccc agtaagcaat ggcaagcgtt
     1921 gctgcaatcg ctggcgcacg atctcgaaca gggcattgct ttttccaatg ccttattacc
     1981 ctggtcagag gtatttccgc cactctatca ggcgatgatc cgcacgggtg aactgaccgg
     2041 taagctggat gaatgctgct ttgaactggc gcgtcagcaa aaagcccagc gtcagttgac
     2101 cgacaaagtg aaatcagcgt tacgttatcc catcatcatt ttagcgatgg caatcatggt
     2161 ggttgtggca atgctgcatt ttgttctgcc ggagtttgcc gctatctata agaccttcaa
     2221 caccccacta ccggcactaa cgcaggggat catgacgctg gcagacttta gtggcgaatg
     2281 gagctggctg ctggtgttgt tcggctttct gctggcgata gccaataagt tgctgatgcg
     2341 ccgaccgacc tggcttatag tgcggcagaa attgctgtta cgcatcccga ttatgggttc
     2401 actgatgcgg ggacaaaaac tcacgcagat ctttacgatt ctggcgctga cacaaagtgc
     2461 aggcattact tttttgcagg gcgtagagag cgtcagagaa acaatgcgct gcccgtactg
     2521 ggtgcaactt ctgacacaaa tccagcacga tatcagtaac ggtcatccca tctggctggc
     2581 gctaaaaaat accggggagt ttagcccgct ctgtttgcaa ttagtgagaa caggagaggc
     2641 atccggctcg ctggacctca tgttagacaa cctcgcccat catcatcggg ataacacaat
     2701 ggcgctggcg gataacctcg cagccttact ggaaccggcg ttgctgatca taacgggagg
     2761 aattatcggt acgctggtgg tggcgatgta tctgccaatt ttccatttag gcgatgcgat
     2821 gagtgggatg ggataacgct ggcgtgttgc tccacaccag cgttggaaga ttacaggttg
     2881 ttgaagatgc ggttttcttg ttcctgcaca cggataaatg tggtgcgctt ggtcagttct
     2941 ttcaggcgtg aagccccaac gtatgtacaa gctgaacgca ggccgcccaa aatatcacgc
     3001 gcggtatttt caaccgggcc tcgcagcggc agcttaacgg ttttaccttc tgctgcgcga
     3061 tattccgcaa cgccgccaac gtgacgtttc atcgcagact cggagctcat gccgtagaac
     3121 agcataaatt tctcgccgtt ctcctcaacg atgcgaccgc cgctctcttc gtggcccgcc
     3181 agcatgccgc caagcatgac gaaatcggca ccgccgccaa aggcttttgc gacatcgccc
     3241 ggcgtggtgc agccaccgtc gctgacgatc attccgccca gaccgtgcgc cgcatcggca
     3301 cattcgatta ccgcagaaag ctgcggataa ccgacgcctg ttttgacgcg agttgtacaa
     3361 acagaacctg ggccaatgcc aactttaacg atatcagcac cggagaggat aagctcctca
     3421 cacatttcac cagtcactac gttgccagca caaatggttt tggtcggcca cgcttcacgc
     3481 gctttcgcaa cgaactgcac gaagtgttcg gaataaccat tcgccacatc aatacaaaca
     3541 aagtttaatg ccgggttcag gtcgagaatc tgtttagttt tttcgaaatc cgcatcagac
     3601 gtaccggtag aaaccatcac atgtttcagc acatcagcgg aagaattgtt gataaacgct
     3661 tgccactctt cgacagaata gtgtttatgc acagcagtca aaatatcaaa agaagccagc
     3721 gcagaggcca tagaaaatgt acctacggtg tccatatttg cggcgataat cggcacgccg
     3781 gaccagctct gatctgaatg tttgaaggtg aattgacgtt ccagttcaac atcggaacgg
     3841 cttttaagag tggagcgttt agggcggatg agaacgtctt taaaacctaa cttcagatct
     3901 tcttcaatac gcatgtgcgg attcctgggg ttaatggcta taagggtaag agcgcaactc
     3961 cagtgacgct atcatacgca ctaatcaatg cggcgcaaga ctgcgaaatt gtcttttttt
     4021 acgctacaat cccataaatt tacctggtaa atagtgagcg aacgtttcat caatttcgct
     4081 ttcgtgcact catttttaac gttttgataa tcatgatgaa ttcccgggaa tataaattat
     4141 gaggtatata gttgccttaa cgggaggcat tggcagtggc aagagtaccg ttgccaatgc
     4201 gtttgctgat ctcggaatta acgtcattga tgccgatatt attgcgcgtc aggtggttga
     4261 accaggtgca cctgcgctac atgccattgc tgatcacttt ggcgctaaca tgattgctgc
     4321 tgatggaaca ttgcagcgcc gggccttgcg cgagcggatc ttcgccaacc cggaagagaa
     4381 aaactggctt aacgccctgc tgcatccgct gattcagcaa gagacgcaac accagatcca
     4441 gcaagctact tccccctatg tactgtgggt tgtgccattg ctggtagaaa actcactgta
     4501 taaaaaagcg aatcgagtgc tggtggtgga tgtcagccca gaaacgcaac ttaagcgcac
     4561 catgcagcgc gatgatgtaa ctcgcgagca tgtcgaacaa atccttgctg ctcaggcaac
     4621 gcgcgaagcc cgccttgccg tggcagatga cgtcattgat aataacggcg caccggatgc
     4681 tatcgcatcg gatgttgccc gcctgcacgc acactatttg cagcttgcgt cgcagtttgt
     4741 ctcacaggaa aaaccgtaat gcagacccag gtcctttttg aacatccact aaatgaaaaa
     4801 atgcgtacat ggctgcgcat tgagtttttg attcagcaac tcaccgttaa tttacccatc
     4861 gttgaccacg ctggcgcgct gcatttcttc cgtaatgtca gtgaattact ggatgttttc
     4921 gagcgcggcg aagtccgcac tgagctgttg aaagaacttg accggcagca acgtaaactc
     4981 cagacctgga ttggcgtgcc tggcgtggac cagagccgta ttgaagcatt aattcagcag
     5041 ttaaaagcgg cggggagcgt attaatttcc gcgccgcgta tcgggcaatt tctgcgtgaa
     5101 gatcgtttga ttgctctggt gcgtcagcga ctgagcatcc caggcggctg ttgcagcttt
     5161 gatttaccta cattgcacat ttggctgcat ctaccccagg cgcagcgcga cagccaggta
     5221 gaaacctgga ttgccagcct gaacccgctc acccaggcac ttaccatggt gctggattta
     5281 attcgccagt cggccccctt ccgtaaacaa accagcctga atggttttta tcaggataac
     5341 ggtggcgatg ccgacttgct gcgcctgaat ctgtcgctcg attcacagct ttatccgcaa
     5401 atttccggac ataagagccg ttttgccatt cgttttatgc cgctggacag tgaaaacgga
     5461 caggtaccgg aacgtctaga tttcgaactg gcctgttgct aaggagtgaa aatgtcagaa
     5521 actattacgg tgaattgccc aacctgcggg aaaacggtgg tatggggtga aatcagcccg
     5581 tttcggccat tttgctccaa acgttgtcag ctgatcgacc tcggagaatg ggctgctgaa
     5641 gaaaaacgaa tccccagcag tggcgatctt tccgaaagcg atgactggag cgaagagcca
     5701 aagcagtgac attggtctga tgccgcacat aggcctgata agacgcggac agcgtcgcat
     5761 caggcatctt gtgcaaatgt cggatgcggc gtgaacgcct tatccgacct acagactaca
     5821 gacgcttaag cttcgcaatt accggttcat tggctggcgg aaaatcatcg gcattaagac
     5881 cgaccagcga catccactca ccgggttgcc cttctttacc ccacggcacc ccttcccaac
     5941 tttcgaccag ccagaaccac agagttatat gcctgtccgg gaattcatat gccagttttt
     6001 caaatagcga aaaatgttgt ggggtaatcc cgacctcttc ctgaagttca cgcaccaccg
     6061 cctgttccgg cgtttcgccc atttcaattt taccgccggg aaactccagt ttattcgcca
     6121 tgtgcgcatc tgctgcgcga cgcgttataa agatttcatt gttctcgttg cgaataatac
     6181 ctaccgcaat ttgcagcttt ttcattgttt taaacctata aaaaaggcgc agaatcctgc
     6241 gccttttgct tcaacagtta gcttttattg caggcggcca tgacactgct tgtatttttt
     6301 accagaaccg cacgggcaag gatcgttacg tcctactttg cgctcaccgg tttgcgccgc
     6361 cagtgcagct gcggctgcag agtcgtcatc ctgatggcta agctgctgca tttgcgctaa
     6421 acgctcggct tccatacgac gctgttgttc cagctcctca acctcttcag gcatacgtac
     6481 ctgaactttg ctcagcgtac tgataacttc atatttcaac gactccagca tcgctgcaaa
     6541 catggagaac gattcacgtt tgtattcctg cttcggatct ttctgtgcat agccacgcag
     6601 gtggataccc tgacgcagat agtccatcgc tgccaggtgc tctttccaca gggagtcaag
     6661 cgtttgcagc atgacgcctt tctcgaagtg acgcatcatc tcagcaccaa ccacttcttc
     6721 tttacgctga tacacttcga tggactgcgc cagaatgcgc tcacgcagcg tctcttcatg
     6781 cagttctggt tctttatcca gccactcggc aattggtaaa tcgaggtcga aatcgttctt
     6841 cagacgttcc tgcagccccg gaatatccca catttcttcc agcgactgtg gcggaatgta
     6901 ggcatcaatg gtggctttga acacatcttc acgaatgctg ttgatggttt cgctcacatc
     6961 gctgacatcc agcagttcgt tacgctggga gtaaatggcg cgacgctgat cgttagccac
     7021 gtcatcatat tccagcagtt gcttacgaat gtcgaagtta cgactttcaa ctttacgctg
     7081 ggcgttggca atcgctttag tcacccacgg gtgttcaatg gcttcgcctg gcttcatacc
     7141 cagtttacgc atcatgccgg atactcggtc ggaagcaaaa atacgcatca gcgcatcttc
     7201 catcgacagg tagaaacggg aagaaccagc atccccctga cgaccagaac gaccgcgcaa
     7261 ctggttatcg atacgacggg attcgtgacg ctcggtaccg atgatatgca ggccacctgc
     7321 ttccagtacc gcatcgtgac gtacctgcca gtcggcttta attttttcaa tttgctctgc
     7381 ggtcggattt tccagcgcgg caacttctgc ctgccagcta ccaccgagca caatatctgt
     7441 accacgaccc gccatattgg tcgcgatagt caccgcagcc ggataaccag cctgagcaac
     7501 aatcgccgct tcgttggcgt ggaatttggc gttcaggacg ttgtgcttaa taccggcttt
     7561 ggtcagttcg tttgacacca gctccgattt ttcgatggag atagtaccca ccagcaccgg
     7621 ctggcctttc gcagtacgtt ctttgatatc ttcaatgatc gcctgaattt tttccgcttc
     7681 agtcatgtag accaggtccg gcagatcttt acgaatcatt ggacggttgg tcggaacaac
     7741 gacggtatcc agcttgtaga tggagctaaa ttcgaaagct tcggtatcag cagtaccggt
     7801 catccccgcc agtttttcat acagacggaa gtagttctgg aaggtgatcg aagccagcgt
     7861 ttggttttcg ttctggatct gcacaccttc tttcgcttcc acagcctggt gcagaccatc
     7921 ggaccagcga cggccctgca tggtacgacc ggtgtgttcg tcaacgatga taacttcacc
     7981 atctttaacg atgtagtcga cgtcgcgggt aaacagcgca tgagcgcgca gcgccgccgt
     8041 tacgtggtgc atcagcatga tgttggccgg agagtacaga gactcccctt catccatgat
     8101 gccctctttc accagcagtt cttcaatcag caccagacca cgttcggtca ggttcacctg
     8161 gcgagatttt tcgtccaccg agaagtggcc ttcgccctgg aaggtttcgg agtcttcttt
     8221 ttcctgacgg atcaggtgcg gaataatttt attcacgcgt ttatacattt ccgagctgtc
     8281 ttctgccggg ccggaaatga tcagcggtgt acgcgcttca tcgatcagga tggagtccac
     8341 ttcgtccacc agcgcatagt gcagtttacg ctgtacacgt tcttcagggc tgaacgccat
     8401 attgtcgcgc aggtagtcaa agccgtattc gttgttcgta ccgtaagtga tgtcagctgc
     8461 gtaagcttcg cgctttgccg gtgctggcat gcccggcagg ttgataccga cagtcaggcc
     8521 aaggaattca aacagcggac ggttgttttc ggcgtcacgt tgcgccaggt agtcgttgac
     8581 ggtaactacg tgcacgcctt taccggttag tgcgttcagg taagcaggca gcgttgcggt
     8641 cagggtttta ccttcaccgg tacgcatttc ggcgatgcag cgttcgttaa gaaccatacc
     8701 gccgagtaac tgaacgtcga agtgacgcat accaaagacg cgcttacttg cctcacgtac
     8761 cacggcgaaa gcttccggga tcagattttc cagcacttcg cctttttcca gacgtgcacg
     8821 aaactctgcg gttttccctt tcagttcttc gtcggagagt ttttccatct ccggttccat
     8881 ggcattgatg atgttgacca ctttgcgcat ccggcgcagg gtgcgatcgt tacgactacc
     8941 gaaaacttta gttaacaatt tgattagcat aataaaatct caaacgcccc gcgttgcgga
     9001 gttaataaaa tgaagtaaag gtttattgtt gttaggtgag gcgttgaggg ccagcacgga
     9061 tgccttgcgc ctggcttatc cagacgggcg tgctgaattt tgcttgtggg gtaaaatgcg
     9121 cataatcaat gcgataaccc ttttcagacg gcgtgccttc ctgggtcagc agcgcgctga
     9181 gcgtatccag taatgcaaga tgttgcgcct gaagaggcaa agattcttca gcaacgggca
     9241 gtgtttgcgg tgccattgcg aaagaaagat gacggattac cgtgcgaatg gcatattgat
     9301 gccagtaatc aacggaatag ttcgaattcg ggcggcgtgt gttcgcttcc agcaaggcca
     9361 attgaccaaa gttaactttg gctgaaggct cgtggttgcg ggttgtcgct tttgcgggca
     9421 cgtttggttc ggcggcgttg ctgagcgcag gcaaacctaa actcgccgcg accatcccta
     9481 ataagagatg cggccagaag tagcgtttac caaactgtcg ccagcgcgtc agtattccac
     9541 tcacgttatt gccatcccga tcgaattcaa acgtatttag cgcacaaatc ttatcattaa
     9601 agcctgaagt ccacagcatg aatgaagata agttgtgcgt aaaagtgctt aagaaaacag
     9661 cgttcgcacc gttttttata gctcttataa aattcaaaaa aaaacgactg gttcacctgg
     9721 ccggagagag tgccagattt gccagtcgaa ttttatacga cagtataaat gtcgttatgc
     9781 cagtacagct gaaggcgctt tgaaggtcaa cggcagttct gcgtcgtcct ggaaggtcac
     9841 atattcccaa gcttcctgtt tcgccaggac agcctgcagc agtttgttat tcagtgcatg
     9901 accggattta taagcgataa atgcaccaat aatattgtga ccacacatga acaagtcacc
     9961 gatcgcatcg agcattttgt gacgcacaaa ttcgtcttca aaacgcaggc cgtcttcgtt
    10021 cagtacgcga taatcgtcaa caacgatggc acaatcgaag ctgccgccca ggcacaaacc
    10081 acgggactgc agatattcga tatcacgcat gaaaccgaac gtacgcgcac ggctgatctg
    10141 gcgcataaac gcatcagcgg agaagttcat cgcatagcgc tggttgctgg aatcaatagc
    10201 cggatggtta aaatcgatgg tgaaatccag cgaaaaacca ttgtacggct taaattcagc
    10261 ccacttatcg ccatcttcga cacgaacagt ctctttgatg cgaacaaatt ttttggcgca
    10321 gttcaactcg tcgataccgg cgtcaagcag caggtataca aacggagcgg cgctgccgtc
    10381 catgatcggg atttccggcg cgttaacttc gataacaatg ttatcgatgc ccaggcccgc
    10441 gagagcagca ttgaggtgct ctacggttga aatccgtaca tcatgctcgt tgaccagaca
    10501 cgtacagagc atggtatcac gcacagattt ggcatcggcc gggaaatcta ccggtggatt
    10561 caagtcggtg cgacgataga tgaccccggt gttggccggc gcagggcgta acgtcagagt
    10621 gactttcttg ccggtatgta aaccgacacc cgtcgcctga acgatacgtt taagtgtcct
    10681 ttgtttgatc atcgtattat ctcgccaaat tacctatcca accgaagtgt actatacatt
    10741 cggcgggcca gtttagcaca aagagcctcg aaaccaaaat tccagtcaat tcttaatcag
    10801 cttgcttacg caggaatgct gggatatcca gataatccgg ctctttcgca gtttgcggcg
    10861 cattgtcatt cacgacttta gcaaccggct tctgctcctg ggtcagcgga gccatcccat
    10921 gctgctggta gcgatccatc actggctgct gaacctgctt attggtcacc agagtgattt
    10981 caggacgttt gtccatgccg atacctgtcg caacaacggt tacgcgcagc tcgtcattca
    11041 tatccgggtc aagagaagta ccgataacca cagtcgcgtt gtcggaagca aatgcacgga
    11101 tggtgttacc taccgtttcg aactcatcca gacgcaggtc gaagcccgcc gtgatgttaa
    11161 ccagcacgcc gcgcgcgcca gacaggtcga tatcttccag cagcggagaa gagatagcca
    11221 tttcagcagc ttcttccgca cggtcttcac cgctcgccac gccagaaccc atcattgcgt
    11281 agcccatctc agacattacg gtgcgtacgt ctgcaaagtc cacgttcatc aaacccggac
    11341 gagtaatcag ttcagcgata ccttgcacag cgcctttcag tacatcgttc gctgcgccaa
    11401 acgcatccag cagggagata ccgcggccca gaactttcag cagtttgtcg ttcgggatag
    11461 tgatcagaga gtccacatgc ttggacagtt cagtgatccc ctgctccgcg aatgccatac
    11521 gcttcttgcc ttcaaagttg aaaggcttag tgacgacagc aacggtcagg atacccaaat
    11581 cttttgccac ttcagcgacg actggtgctg cacctgtacc ggtaccacca cccatacccg
    11641 cagcaataaa gaccatgtct gcaccttcca gcgccgcacg caatgcatcg cgatcctcat
    11701 cagccgcatt gcggccaact tctggattag cgccagcgcc cagtcctttg gtgataccgc
    11761 taccgatttg aatcgtctgt ccaaccgctg ttttacgcag cgcttgtgca tcggtattta
    11821 ccgcgaagaa ttcaacacct tcaatgcgct cgcgcaccat gtgttcaaca gcattaccgc
    11881 cgccgccgcc gacgccgatg actttaatca ccgcgtcatt ggtaagttcc attggttcaa
    11941 acatagtttc tctccgattt gtgcctgtcg cctgaggccg taatcatcgt cggcctcata
    12001 aaaattaaaa ctcttttcgc agccaactat tgagtcgctt gatccacgag ccaactgatg
    12061 ctgtaacacg tttttctact tcagcttcac cgttaagatg tgactctttc ccatagtgaa
    12121 gcaatcccac cgccgtcgaa taatacggct cctgagcata atccgttaaa ccggtaatgt
    12181 tcagcggcgc gccgatacgc acttgcgtat gaaacacgcg ctgagcacag gctgcaagac
    12241 cttcgatctg cgctgcgcca ccggttaata caatgcctgc cgccaggtga tgtttaaccc
    12301 cttgttggcg aagcttttcc tgcaactgca atatctcttc gttgaccagg ttgagcagct
    12361 cggtatagcg cggctcgatc acctctgcca gggtctgacg ttgcagactc cgtggcggac
    12421 gaccgcctac gctcggcact tccacgctct catcttttcc aacgatggaa cccagcgcac
    12481 aaccgtggcg aactttaatc gcttcggcgt cgcttggcgg cgtgccaaag gcgtaagcga
    12541 tatcactggt cacgacattg ccagcataag gaattacctt agtgtggcgc aatgccccac
    12601 cggtataaac ggcgatatcc attgtaccac ctccgatatc gacgacgcag acacccagtt
    12661 cacgttcatc ttccgtcaat accgaataac ttgatgccag tccggcaaat atcagttggt
    12721 caactttcag cccacaacgt tcaaccgctt tgacgatgtt tttcgccata tcgttgtgac
    12781 atgtgatcag gtgcactttt gcctgcatcc gcacgcccga aagtcctacc ggattcttga
    12841 tcccttcctg atagtcaatc gcatactctt gcgggatcac atgcagcaca cgatgttcat
    12901 cgcgcacacg caccgatttc gcggtatgga cgacgttttc cacatcttct tgcgtcactt
    12961 cttcttcaga aataggcacc ataccaattt cattctggca gctgatgtgc ttaccagaaa
    13021 gcgccagata taccgaagag atctgacaat ctgccatcaa ttctgcctgg tcaatggcgc
    13081 gttgtacgca cttgaccacg gattcgaggt cgttcacccc gcctttatcc ataccacgtg
    13141 acgggcagct gcccacgcca atgatattga ccataccgtc gggcagaact tcccctacta
    13201 aagcggcaac cttcgcggta ccaatctcca gtcctactac cagttttctg tccgtcgcct
    13261 tgatcattgt tgttctgcct gtgcctgatt ttgttgctga gtagattcct ctggcggcaa
    13321 gggcgcccag cctactgccg ctccagagtc ataacgcaaa tcaacgtagc taatccgttt
    13381 gccatcggtt tgcgccagct gctgtaaaac cggataaagt tctacaaagc gagccaaacg
    13441 tttcatcgta tcgccccggc caagattgag cttaatatcg ttattcagcg tcaactgcca
    13501 ggaacgccgc gcggtcatcg ccgtttcctt cagagtaaat ctgtcctttg ccagcatctg
    13561 ccccatttcg cgatagccct gcaacacttc attggcgctg ccttccgggc catacagcat
    13621 tggaagcacc tgcttgctgg tgcgatctgg cggcacgctg aaggtgtttc cttccgcgtc
    13681 taccatatgt tgatcattcc accgcgcaat cggcacatat tcaaccagat gaatcttcaa
    13741 ttcatcaggc cactgctttc tgacgctcac ctgcttaatc cacggcaggc gttgttctat
    13801 ttgcgtctgg atgatgttga catcctgggt cataaaggta cccggctcac ccaatgccag
    13861 gatcgactgc cggatatcgt cattacgcgt gtaatggcgt tcaccggtca acaccagctt
    13921 tgagagcggc aggcgttgcg catcttccat ccagcccaac acgacccagc cgctcaccaa
    13981 cactgtcgtt aaaacggtca gcaggaaaag gatccccgcc agacgcgttc cattattgcg
    14041 gcgagaagaa acctcttctt cgctgtttcg cgtgttcaga gcagcctgcg acatattagt
    14101 ccgccagttc cagaattcgt actaccaact gcgagaagct catacctgcc tgacgtgccg
    14161 ccatcggcac caggctgtgg ctggtcatac ccggtgaggt attggcttcc agcagataaa
    14221 actgtccatc gctgtccagc ataacgtcaa tacgtcccca tcctttgcaa cctaacgtcg
    14281 tccatgcttt cagcactaat gcctgcaaat tggcctcttg tgacgcatcc agacctgcgg
    14341 ggcagaaata ctgtgtctca tcagagagat acttcgcctc ataatcatag aaggttccgg
    14401 acggttgaat acgtattgac ggtaaaattt cttcaccgag tatcgcaacc gtgaactccg
    14461 gcccacttag ccatttttca atcaatactt cttcatcgtg ctgaaatgcc aatcttaatg
    14521 catcttgtag agcattttct gctactactt ttgacattcc cacactggaa ccttcgcggc
    14581 tcggcttaac gataaccggc aaacccagag cagaaatttc tgctaactgc ttatcgctca
    14641 ggcctttttc aaactctgcg cgggttaacg ctacccacgg cgcgaccggt aaaccggcac
    14701 cttgccacag cagtttgctg cgtagtttat ccattgaaag cgcagatgcc atcactccgc
    14761 tgccggtata aggcaagccc atcagctcga gcatgccctg cagcgtacca tcttcaccgc
    14821 cgcgaccgtg tagcgcgata aacactttct gaaaacccat cgacttcagt tgcgtcacgt
    14881 cgacttcttt cgggtcgaca ggatacgcat caataccacc ttcacgcagc ccggctaaca
    14941 ccgctgcgcc agaattcaga gaaacttccc gctcagcgga agtcccgccc aacaggaccg
    15001 cgattttatc agtcatgttg ttcttcctcc ggagtttgcg gcttcagttt gatttcagct
    15061 aaagaacggg caatttttcc gatattacca gccccctgaa cgagaatcag gtcgttaccg
    15121 gttaataccg gtgccagcat ctcggctacc tgcgcagggt ccggcaccag aatgggatca
    15181 attttcccac gtccacgaat tgtgcgacac agcgaacggc tgtccgctcc cggaattggc
    15241 gcttcgccag ccggatacac ttccagcatc aacagggtat caacctgcgt cagcacattg
    15301 gcgaaatcat catacaagtc gcgcgtacgg gtaaaacggt gcggctgaaa cagcattacc
    15361 aggtttttat ccggccagcc tgcgcgcgcc gctttaatgg tggcgtcaac ttccgtcggg
    15421 tggtggccgt agtcatcgac cagcattgcc gtaccgcttt taccattcac tggctccagc
    15481 gggaattcac cgaggaaatc aaaacggcga ccagtcccca ggaagctctc cagcgcacgc
    15541 aaaatagcct cgtcgtcaat tccctcttcc gtagcaaccg caaccgcagc tgcggcgttc
    15601 agcgcgttat gacggcctgg cgcattcagg gtgacgcgca tcggctcttt gtcctggcgc
    15661 agcagcgtaa agtgcccctg cgggccaatc tgctgataat cttctacacg cacgtcggca
    15721 tcttcgctga agccgtaagt cgtggtctga cgtcccacac gcggtaacaa ttcgcggatc
    15781 accggatcat caacacacat caccgcacga ccgtaaaacg gcaggttgtg cagaaaatta
    15841 ataaaagtct gttttaaatt ctcaaagtcg ccctggtagg tatccatgtg gtcggcttcg
    15901 atattggtga caatcgccac catcggttgc agatgcagga acgatgcatc actctcatct
    15961 gcttcggcaa tcaggtaccg accatgcccc aaacgcgcat gaacccccgc cgcttttacc
    16021 agcccgccgt taacgaaggt tgggtcgagc cccgcttctg cgtagatgct ggaaaccatc
    16081 gcggtggttg tcgttttgcc gtgcgttcct gcaatggcga tgccatgacg aaaacgcatt
    16141 aactcagcca gcatttcggc acgacggatc accggaatac gcgcttcatg agctgcgaca
    16201 atttccgggt tatcggcaga aatggcgctg gaaacaacga ccacgctggc atcacgtacg
    16261 ttttccgggc gatggttgaa ataaatcgtc gctcccagat tcattaactg ctgcgtgacc
    16321 ggatttggcg ctaaatcgga accactgatc tgataacctt cattggccag aacttcggca
    16381 ataccgccca taccggcacc accgatgccg acaaaatgta tgtgccgaac gcgacgcatt
    16441 tcgggcacga tggaacgcag ttttgccaat tgttgtgtat tcattcttta cgccattaac
    16501 ttcttaaatt catacgatgc aaaaggcatc gctacaatta cgcccgggca gcccggctca
    16561 cttcatttgc cactcgctcg gtggcatccg gaatggatgc agcgcgggcg cgttctgcca
    16621 tggttaataa ggtttctcgc gaccacccgg ccagggtgtt ggcgacagca tccacgctaa
    16681 gctgtggctg ctcgataatt ttggctgcgc ccgctttttc cagcggtagc gcattccagt
    16741 attgctggcg gtctttatgt tgaaacggca caaacaacgc cggtagtcct gccgcggcga
    16801 tttcactcac cgttaaagca ccggagcggc aaacgacgac atccgcccac gcatacgccg
    16861 ccgccatatc atcaataaat tccgtcactt tatgctgcgg ttgccccgct tcggcatacg
    16921 cctgttcaac ggattgttgc gaacctttac cgctctgatg ccagatagtg actgaatcac
    16981 ccagtttcgc agcaacctgc ggcattgtct ggttaagaat gcgtgcgccc tgggaaccac
    17041 ccactaccag cacacgaacc ggaccttcac gtccagccaa acgttgctgc ggcaacggca
    17101 gcgccagcac atcggtacgc accgggttac ccaccacttc cgcattaggg aaagcgcctg
    17161 gaaacgcctg catcactttg gtggcaatct tcgccagcca tttattggtt aagcccgcaa
    17221 taccgttttg ttcatgaagt acaaccggaa tgcctaacga ccacgcggcc agaccacctg
    17281 gacctgatac atagccgccc ataccgagta ccacgtcagg tttgtacgct ttcataatcg
    17341 cccgcgcctg acgccaggcg ttgaagatac gcagcggcgc agctatcagt gcttttatac
    17401 cttttccacg cagaccagag atacgaatga aatcaatttc gatgccatgt tttggcacta
    17461 agtccgcttc catacggtcg gcagtcccca gccagcgaac ttgccaaccc tgagccatta
    17521 gatggtgcgc aaccgccagt cccgggaata catgtccacc ggttccgcct gccatcacca
    17581 ttaatcgctt tccttgacca ctcatcgtga acctcgtaca aacgcctgcg ctttctccag
    17641 acgcgtttca taatcaatac gcaacagcat catgatggct gtcgacataa tcagtaagct
    17701 cgaaccaccg taactgatca gcggcaatgt cagacctttg gtcggtaaca tccccgccgc
    17761 cgcgcctacg ttaaccagcg cctggaagct aaaccagatg ccaatagaac aggcgagaaa
    17821 accggaaaaa cggtggtcaa tttctaacgc tttgcggcca atcgacatcg cgcgaaaagc
    17881 gacgaagaat accattaaaa gtgccagcac cacaccgaca taccccagtt cttcgccgat
    17941 aatggcgaaa ataaagtcag tgtgcgcttc cggcagatac tccagttttt gtaccgagtt
    18001 acctaaacct tgtccccaaa gttcgccgcg accaaacgcc atcagcgatt gcgttaactg
    18061 atagccgctg ccaaagggat cttcccacgg gttccagaat gcggtaacac ggcggatacg
    18121 gtacggttcg gcgagtatca gcaacacaac cgctgaaatg cccataccga taatggcaat
    18181 gaactgccac aatttcgctc ccgccaggaa caacatcgcc agcgtagtca caaacaccac
    18241 caccaccgta ccaaggtctg gctgtgccag cagtaacact gccaacacca gaatcacgcc
    18301 catcggtttc aggaagccgc gcaggttatt acgtacttcg tcgcctttac gcaccagata
    18361 gttggcgata taacaaaaca gcgacagttt tgtcagctcc gcaggctgga tacgcagcaa
    18421 accgagatcg atccaacgcg atgccccttt aaccgagctc cccactacca gcacgatcat
    18481 cagcaggatg atagatccga gcagcatcgt ggcactgtag cgttgccaga actccatcgg
    18541 cagacgcagc gtaatgatcg ccagaatgaa tgccaggatc agatagacgc catcacgctt
    18601 cgcgaagaag aacggatcgt tggttaagcg ttgccctatg ggcattgacg ccgaggtcac
    18661 catgataaag ccaatcgccg caaggccgaa ggtcagccac agtaaggtgc gatcgtacat
    18721 gatcaggctg tcggtatctt tttcccgcga gcccatcacc cagcctttta gcgccgtgga
    18781 gatccagacc aggatactga atcctggcag gcgcggcatt ttcaggcgag ggagagataa
    18841 acgcatcaac ctaactcctt cgccagacgg gcaaactcat tgcctcgttg ttcaaagttc
    18901 ttgaactgat caaggctggc acaggccggg gagagcagaa ccatatcgcc cggctgaaca
    18961 cgcggagcca gcaagcgcat cgcctgttcc atagtttcgg tttgttctgc cacttccggg
    19021 cgtagcgccg ccagctgcgc accgtcacga ccaaaacagt acaaacgcac gttgtcgcca
    19081 ttcagatagc gcgccagtgg actgaagtcc gccgatttac catcgccgcc cagcaacaaa
    19141 tgcagcgtgc cgtctacctg caagccattc aacgccgctt ccgtactgcc gacgttagtg
    19201 gctttcgaat cgttaatcca gcgtacgcca ttgtgctcca gcaccacttc aaagcgatgc
    19261 ggcagaccgg tgaaggtggt taacgctttc aggctgctgg cgcgcggcaa accagctgcg
    19321 tctgccagtg ccagtgctgc cagcgcattg gtgtagttat gctgcccgga aagtttcatc
    19381 tctttcacgt tcagcacttt ctcgcctttc actcgcagcc aggtttctcc ctgctgatga
    19441 ttcaggtgat agtcacccat gttgacgcca aagctgacgc agcgttcatc agcaccgcga
    19501 atcggcattg ttaaggcatc atcagcattg acgacacaaa ctttcgcatt ttcgtaaata
    19561 cgcaattttg ccgcacggta ttgctgcaaa ccaaacggat agcggtccat atgatcttca
    19621 gtcacgttca gaatggtcgc cgccaccgcc tgtaagctgg aagtggtttc cagctggaag
    19681 ctcgacagtt ccagcacgta cagttcgcac tcagcatcaa gcagcatcaa cgctggcagg
    19741 ccaatattgc cacccacacc aacgttaacc cccgccgctt tcgccatttc acccactagc
    19801 gtggtgaccg tgcttttgcc gttagaaccg gtaatcgcca caatcggtgc ttgtgcttcg
    19861 cggcagaata gctcgatatc gccaacgatt tcgattccgg catcagcggc agcgcttaag
    19921 gatggatgcg ccagtgcaat accgggactg gcgacaatca gatctgccgc catcagccat
    19981 tcatcattca gactgcccgt gtggcgttct acggcttcgg gtaatttatc caggccaggc
    20041 ggtgtcatac gcgtatccat aacgcgcggc gtcacaccgc gagcgaggaa aaagtccacg
    20101 caggaaagcc cggtgaggcc caggccgata atgacgacat ttttaccctg ataatcagcc
    20161 atgattaacg taccttcagc gttgccagac caatcagaac cagcatcagc gaaataatcc
    20221 agaaacgcac aatgacgcgc ggttccggcc agcctttcag ttcatagtgg tgatgaatcg
    20281 gtgccatgcg gaaaatacgt tgtccgcgca gtttaaagga gccgacctgc aggatgacag
    20341 aaagcgtttc taccacgaac acgcccccca taatcaccag caggaattcc tgacgtagca
    20401 gtacggcgat aatgcctaac gcaccaccta acgccagcga acctacatcg cccataaaga
    20461 cctgcgccgg ataggtgtta aaccacagga agcccagtcc tgccccgact atcgcggtac
    20521 agacaataac cagttccccg gcgtgtcgca gatacggtat gtgtaaatag ctggcaaagt
    20581 tcatgttgcc ggtcgcccac gccaccagcg caaaaccacc ggcgacaaat acggtcggca
    20641 taattgccag gccgtcgaga ccatcggtca ggtttaccgc gttgccagta cccacaatga
    20701 cgaagtaagc cagcagaatg tagaacagcc ccaactgcgg catcacatct ttaaagaatg
    20761 ggaccaccag ctgcgttgcg ggcgtgtctt tgccggcaag gtacagggcg aaggcgacac
    20821 ccagcgcaat gaccgacatc cagaaatact tccaacgagc gatcaaccct ttggtgtctt
    20881 tacgcaccac tttgcgataa tcatcaacaa agccaataac accgtaacct accagcacca
    20941 ccaacacgca ccagacgtac ggattggacg ggtaagccca cagcagtacg gagatcacaa
    21001 tcgccgtcag gatcataatc ccgcccatgg tcggcgtacc gcgcttgctg aagtgtgatt
    21061 caggaccgtc gttacgcacc acctgaccaa aggaaagttt ttgcaaatga gcaatcatac
    21121 gcgggcccat ccacaatgag atgaacagcg cggtcagcag gctgacgatg gcgcgaaacg
    21181 tcagatagga aaagacgtta aagccggaat aatatttgac caaatgttcg gccagccaaa
    21241 ctaacatgtc ccattctcct gtaaagcgcg tactacctct tccatggcgg cactacgtga
    21301 acccttaact aaaatcgtaa ttacctgttg ctcagcaatc agtgatttaa gacgcgtaat
    21361 taacgcagtt ttatcagcaa aatgttcgcc aacgccgctg gcggtgctga tagcatggct
    21421 ttgtttaccc acgcttaaca cgcggtcaat accagcagct tttgccgcct cgcccacctg
    21481 tacatggcag gcttcgcttt cagcgcccag ttccgccata tcgcccacca ccagcacgcg
    21541 gtagcccggc atttcagcca gtacctgaac agcggcggtc attgaaccga cattggcgtt
    21601 gtaggagtcg tcgagcagca actggttttc tgccagttgg atggggaaca gacggcctgg
    21661 aacagctttc agatttgcca gccccgcttt gatagcatca agcgttgcgc ccacggacat
    21721 ggagagcgca gcggctgcca gcgcattcgc aatattgtga cgccccggca acggcagcag
    21781 aacatcgacg ctaccggttg gggtttgtag ggtaaattcc gtaccgtgcg aggtcacatg
    21841 gatattggtg gcggtgaaat cgctgttggc ggcattgggt gagaaacgcc acactttgcg
    21901 tgagccaatt acgctctgcc agttcagcca gtcgttgttg tcggcgttca taatggcgat
    21961 accgttttcc ggcaggccgc taaagatttc acctttcgct ttcgcgacac ccgcaagcga
    22021 gccaaaacct tccagatgcg ccgctgccag gttgttgacc agcgcagctt ccgggcgagt
    22081 cagactcaca gtccaggcta tttcgccctg atggttcgcg ccaagttcaa taactgcgta
    22141 atcgtattcc ggcgttaagc gcaacaacgt catcggtaca ccgatgtcgt tgttgagatt
    22201 gcctgccgta taaagcgtgt tgccgcactg gcttaaaatc gccgccgtca tctctttaac
    22261 ggaggttttg ccggaggaac ctgtcagagc aaccacgcgc gccggaactt gctggcgaac
    22321 ccatgcagcc agttcaccaa acgccagacg cgtatccttg acgattaact gcggcaggtc
    22381 gatatccagc ggacggctga ccagtagtgc gcccgcgccg ccagctttcg cctggtcggc
    22441 aaaatcgtgg gcatcaaaac gttcgccttt cagggcaaca aacaggcagc ccggcgtcag
    22501 ttttcgggta tcagtggtta cagcatcaag ggtgatatct gcaccttgca gttcaccgtt
    22561 gagaatgtcg gtaagttggc taagggttac gctaatcatg caatcacccc cagcagacgc
    22621 gccaccgtga cgcgatcgga gtagtccaga cgctgattgc caacaatctg gtaatcttca
    22681 tggcctttgc ccgcgaccag caccacatcg ttctctttag cctgcataac ggcgcaagtc
    22741 accgcttcag cacggccttc catcactttg gcatgtccgg catctaacat tcccgccaga
    22801 atatcgttga tgatggcacg cggttcttcg gtacgcgggt tatcgtccgt caccaccgcc
    22861 acgtcagcaa actcttcggc aattgcgccc atcagtggac gcttaccttt atcgcgatcg
    22921 ccaccacagc caaagacaca ccacagcttg cccgcacagt gcagacgcgc cgcctgtaag
    22981 gctttttcca gtgcatccgg cgtatgcgcg taatccacca ccaccgtcgg tttgcctggc
    23041 acagtgaaca cttccatacg tccgcaaacc ggttgcagac gcgcggcggt tttcaacaga
    23101 tcagccaatg gatagccgag tgccaacagt gtcgccagcg cgagcagcag gttgctgacg
    23161 ttaaaagcgc ctatcagatg gctttcaatt tcgccatcgc cccaacttga gctaaagcga
    23221 atcgtcacac cgctgtcgtg atagttcacg tcgatcactt ttaaccagcg tccgtgacag
    23281 ttcggattaa tatgatcttc cattgatacc gcaaccgcgt ccggcagctt tgccagccaa
    23341 cggcggccca cttcatcgtc ggcgttaata atcgcctgac cgcaatgatg ttcagaataa
    23401 agcagccatt tcgcagcttc gtagtgttcc atatcaccat gataatcaag gtgatcgcgg
    23461 cttaagttgg taaagaccga cgccgcaaat ttcaatgccg ccacacggtg ctgtaccagc
    23521 ccgtgggagg aaacttccat tgcgcaaaac gtcgcgccct gctccaccag ccccgccagc
    23581 tcatgctgaa catcgactgc cgaaccggtg gtattttctg tcgggatcac tttccccagc
    23641 agaccgttac caacggtgcc cattaccgcg ctggtttcgc caagcagttg gctccactgc
    23701 gccagcagct gggtagtcgt ggttttgccg ttggtgcccg ttacgcctac gagacgtaaa
    23761 ttgtcagagg gttcatggta aaaacggccc gccagtgcag ataaacgctc gttgagctgg
    23821 ctgagataga tgaccggtac gccgtgcatt tcacggattt caccgtcggt cgcctcatct
    23881 ttcgcctctg caataatggc agccacacct tgcgctatcg cctgcgggat atatcgacgc
    23941 ccgtccgcct gatgacctac tacagctaca aagagatcgc ccgccgcagc cacacggctg
    24001 tcgagtgtca tctctcgcag tgctcgcgaa ggtgcgtctg gcacccacgg agcaagaagg
    24061 tcgcgcaaat tacgatctgc cacctgtccc ctcgccttga ttaatcacaa attcattttt
    24121 atcgcccgtt gtcagcgcat ccggctcgat gttcatggta cgcaatacgc cgcccatgat
    24181 ggcaccaaag accggcgcgg aaacggcgcc gccgtagtat ttacccgcct gcggatcgtt
    24241 gataacaaca accagcgcga agcgcggctg actcgcaggc gcaacgcctg cggtataagc
    24301 aatatattta ttgatgtagc gaccgtccgg cccgaccttt ttcgcggtac cggttttaat
    24361 ggcgatacga tagcctttaa tcgccgcctt cacgccgccg ccgcccggta gcgccacgct
    24421 ttccatcata tgcaccacgg tgcggacaat ggattccggg aagacacgtt caccgggaac
    24481 cggggggtca actttggtaa tcgacagtgg gcgataaatg ccgtagctgc cgatagttgc
    24541 gtagactcgc gctaactgta acggtgttac cattagcccg tagccgaaag agaaggtggc
    24601 cctctctatg tcagaccacc gttgtttttg aggatataag ccactgcgtt ctccgaccaa
    24661 ccccaaattg gtcgcttttc ccagtccaaa acgtgagtaa gtatctacta acgctgagga
    24721 cggcatcgct aacgccagct tggaaacacc gacgttactc gacttctgta ataccccggt
    24781 cagggttaat tcgctgtagc gtgccacgtc tttgatttcg tggccgttaa ttcgataagg
    24841 aatggtattg agtaccgagt tttcccgcac cacgccacgt tgcaacgcgg tcatcaccac
    24901 catcggttta accgttgagc ccggttcaaa cacgtcggtg atggtacggt tacgcatcgc
    24961 ctctttcggc gtgccgctca gattgttagg gttgtatgac gggctgttag ccatcgccag
    25021 cacttcacct gtgttgacat ccaccagcac ggcgctacca gattcagcct tgttaaaggc
    25081 caccgcgttg ttcagttcgc gataaaccag cgcctgcagg cgttcatcaa tactcagcgc
    25141 caggttgtgc gctgcctggc tgtcagtaga agaaatatct tcaattacgc gaccatagcg
    25201 gtctttacgc acaatgcgct cacccggctg cccggtaagc catttatcga aactcttctc
    25261 aacgccctca atcccttgac tatcgacgtt agtaaagcca atgaggtgag cagtcacttc
    25321 gccggatgga taataacggc gagattcttc acgcagatga atacccggca gtttcagttt
    25381 tttgatgtag tccgccatgt cagggtttac ctgacgcgcc agataaataa agcgcccttt
    25441 cgggttggcg ttaatgcggg cagaaagctg atccagcgga atattgagcg cgttagccag
    25501 cgccttccag cggtcaccga cgctgatacc gccagcgtca tgcacttctt tcgggtcagc
    25561 ccaaatcgct tttaccggca cgctcaccgc taacgggcga ccagaacggt cagtaatcat
    25621 gccgcgggag gtggaaactt gctgaacgcg aagagaacgc atgtcgccct ctttcaccag
    25681 catatccggg gagataactt gtaaccacgc tacgcgtccg agcagaaaag ccagcgccag
    25741 gagaatacag ccgcataaca acgcaaaacg ccaactaata aagttggcat gttcttcctg
    25801 acgttttggt ttctgcgttt tcgccgctgc tttcatgcgt cgcgtttatc cttatttttg
    25861 cactacgata ttttcttgtg acggatcaac atgctgcatt tgcagctttt ccgtggcgat
    25921 cctttccacc cggctatggt cgccgagcgc attctcttca aggatcaggt tgcgccattc
    25981 aatgtctaaa gcatctcgct ccagcaccag ttgttcgcgc tgagcggtca gtaaacgggt
    26041 atggtgcgcc gtggttacca cggtcaccgc cgtcaaaata atgcaaatga acaggcagag
    26101 tggcagcttc ccaaatcgca aaagatcgtc accgataaca ccaggcaatg catggcgctc
    26161 gtggcttccc atcgatcctt taactttgct tagagcttct gtcactctgc tgatcatgcg
    26221 ttcgtcctct ctgcgatacg cagaactgaa ctacgggcac gaggattctc agccacctct
    26281 tcttcgcccg gcattaactt gcctaatgct cgcagctgac ggccacccag ttttttgagc
    26341 tgctcttcag tcatcggtaa ccctgccgga acttgcggac cgcggctgtt ttcacgcata
    26401 aaacgtttca caatacggtc ttccagcgag tggaagctga tgatcgaaag ccgcccaccc
    26461 ggggccagca cgttgagcga gctttttagc gcctgctcta tctcctccag ttcactgttt
    26521 acccaaatgc gcaccgcctg gaaggtacgg gtcgcgggat gtttaaactt atctttcacc
    26581 ggcgttgcag cagccacgac ttccgccagt tctttggtgc gggtcatcgg ctgttcgcgg
    26641 ttacgctcga caatggcgcg ggcaatgcgt ttggcaaaac gctcttcacc ataggttttc
    26701 aatacccagg cgatatcggc ttcttctgcg gtttgtagcc attcagcggc tgactgccca
    26761 cgggttgggt ccatacgcat gtccagcgga ccatcgcgca taaaggaaaa gccacgttca
    26821 gcatcatcaa gttgcggtga agagacgcca agatcgagga gaatgccgtc gatcttgccg
    26881 ataagatcgc gctcggcaac gtattcgccc agcgcggaga aaggtccgtg gatgatggag
    26941 aagcgcggat catcaatagt cttcgcaacg gcgatagcct gcgggtcgcg atcgatcgcc
    27001 agcaaacgcc cctcttcgcc aagctgcgag aggatcagac gtgagtgacc accgcgacca
    27061 aaagtcccat caatgtagat gccatcagga cggatattga ggccattaac ggcttcatcc
    27121 agcagcaccg tagtatgttt atagttttcc atcattttat agagacaagt cctgcagtcg
    27181 ctccgataag tctccagtag ccaactgctc tgcgtcgata tcttccttga cctgttgatg
    27241 ccaagttgtt tcatcccaca gctcaaactt gttgaactgt ccaaccagca tcacttcttt
    27301 tgtcagcccg gcatgttgcc gcagtactgg cgcgattaac aatcgacctg cgccatccat
    27361 ctgacattcg ctggcatgac ctaacagtag gcgctgcaca cggcgctcaa ctgggttcat
    27421 gctcgacaga cgcgataatt tttgctcgat aatttcccat tcaggcaggg ggtaaagcag
    27481 caggcacggg tgatgaatgt caatggtgca aaccatttga ccggcagcgt tctcaagcag
    27541 ctgttcccga taacgggtag gcactgataa gcgccctttg ctgtcgagat tgactaacgt
    27601 tgctccccgg aacatgccag cctcacccct tattcccact ttgccccaca atttcccact
    27661 gaaaggagtt tacggagcgg aggaaaagct tgtcaagcca gtcacaaggc ataccgaggt
    27721 aaaaaacccg atgtttacgg ctaatatcag cgttgtttat tttacgtcca acgcgcgaag
    27781 caaattaacg ttatgaatag ctgtaagaaa aaatccctca tcgtcatcac tgttttaaaa
    27841 tgactcacta ttttccacag caaatataaa gtgtcagttt gcgacgcgag cggcatttta
    27901 ggacatatct tccccggtta acagtccttg ttacgtctgt gtggcgcttg atgccagcgg
    27961 gtttgcgcaa aagcaaagaa aagtgtttgt taaatcggca attcatcgcc gcatgtaaca
    28021 aaataatgca aaaacgcgct gtcgatatca cttaattatt gtgaatttca gctggtgagt
    28081 taattaacgg gcgggtttaa aaccatttat caataatagt caggaatagt cttatttact
    28141 ttaagcatat tgatgtccag tcccgtactc tacgcgccag agggaaattc acctggcgcg
    28201 tatttttgtt cgcggcttag ctacggctga gcacaccgcg gcgatagaga ttacgtttaa
    28261 tgcgcgttaa accaggtttt ggcttacgcg gttcgtccag gcttgccagg acaatctcca
    28321 gcacacgctc tgcgacatcg cggtgacgtt gagccactgc cagcaccggg cactgtaaga
    28381 agtcgagcag ttcgttatcg ccaaaggtgg caattgccag gtcagaaggc agtttaccat
    28441 cgcgacgtag cgtgacatcc atcacccctt gcaacaacgc aaacgacgtt gtgaacagcg
    28501 cctgcggcat cagatgcgtt tccagccatt tttcgaataa ctgggcagcc gcctcccgct
    28561 catagctgtt ggcatacagg aaatgcactt cgcgcggatc atctttccag gcagtacgga
    28621 aaccttgttc acgcaggaag ctgacagaaa gctccggcag cgcgccaaga taaagcaccg
    28681 tctcggcggg aaacttacgt aactcttccg ccagcatttc ggcatcatcc tgatcggcac
    28741 caaccacgct ggtgaaatgt tcacgatcga gggcgcggtc cagcgcgaca atcgggaacg
    28801 gggcgttagc ccagcgttga taaaaaggat gctcaggtgg caacgacgtc gaaacaataa
    28861 tggcatcaac ctgacgctgt aaaaggtgct caatgcagcg catttcgttg tctggctgat
    28921 cttctgagca ggcaatcagc agttgataac cccgttgccg cgcctggcgc tcaagatagt
    28981 tagcgatgcg ggtatagctg gtgttctcca gatcggggat cacaagacca atagaacgtg
    29041 tgcgtccagc acgaagccca gctgccacgg cgttcgggtg gtaattgtgc tcacgcacca
    29101 cagccatgac tttttcaacg gttttgtcgc tcacacggta ttgcttcgct ttgccgttaa
    29161 taacatagct tgcagtggtc cgcgacactc ccgccagccg agcgatttca tccagtttca
    29221 caattgcccc ttgcgtaaaa tgtaaaaacc atagccattg tactggtatg ggttaaattc
    29281 attaacatct aagcgcagaa aattaactgc ggcaactgct tttattccag gttcccactg
    29341 atttcgcaaa aaaagcccag cgtgacatgt tgggctgcaa attgcacact gagatcattc
    29401 tcaacgcatt attttatcgc cgcgcgaaag tccgaccaca ccagagcgag caacttccac
    29461 aattttcgcc acctcgcgaa tcgatgctaa aaatgcatca agcttatcgc tggtgcctgc
    29521 taattgaacg gtataaagcg agggggtgac atcgataatt tgcccacgga atatttccgt
    29581 attacgtttc acttcgtcac gcccgtaacc gctggcctga attttcacca gcataatttc
    29641 ccgctcaaca tgcgcgccct gccccaactc actcacgcgc aagacatcga ccagcttgtg
    29701 taattgcttt tcgatctgct caagtacttt ttcatcgccc acggtctgga tggtcatacg
    29761 cgataatgtc ggatcgtcgg ttggcgcaac ggtcaggctt tcaatgttgt agcctcgctg
    29821 ggaaaaaagg ccaatcacgc gggataacgc gcctgattca ttttcgagta agactgataa
    29881 tatccggcgc ataatcaggt tctctccgtt ttgcttaacc acatttcatc cattccgccc
    29941 ccgcgaatct gcatcgggta gacgtgctca ctgccatcga cggtaacatc aacaaacacc
    30001 aggcgattat tgcgcacctg ttccagcgcc tcgctaagtt tgctttccag ctcatgcgga
    30061 tgagagatct ggatcccgac gtgaccatag gcttccgcca gacggacgaa atcgggtagt
    30121 gattgcatat aagattgtga atgacggccg gaatagatca tgtcctgcca ctgtttcacc
    30181 atccccagat agcggttatt gagattcacc accagtacgg gcaactcgta ttgcaacgcg
    30241 gtagacagtt cctgaatgtt catctgaata ctgccgtcgc cagtgacgca aaccacggtt
    30301 tcttctggca acgccatttt gacgcccagt gccgcaggta aaccaaaacc catcgtgccg
    30361 aggccaccgg aattgatcca gcgacgcggt ttgtcgaatg gataataaag tgcagcaaac
    30421 atctggtgct gcccgacatc ggacgtcacg taagcgtctc ccttcgtcaa ccgccaaaga
    30481 gtctcgatca ccgcctgcgg tttaatcttt tcactgtgag tgtcatattt caggcactga
    30541 cgagcgcgcc actgttcaat ttgctgccac cagtcgcgga tctcatccag tggttgatgg
    30601 gcggattctt gcgacaagag ttcaagcatt tgttcgagga cctggcgagc atcccccaca
    30661 atcgggatat ccgcagtcac ggttttagaa atggaagtag gatcaatatc gatatgcaga
    30721 acagtggcat ttgggcagta ctttgccaga ttgttcgtcg ttcggtcatc aaatcgtacc
    30781 ccgacggcga aaatcacatc cgcgttatgc atcgtcatat tggcttcgta ggtaccgtgc
    30841 attcccagca tgcccagtgc ctgacgatgc gttgccggaa acgcccccag ccccatcaat
    30901 gaggaaacaa cgggcagatt caacgcctcc accgtttctt tcaactgctg atggcagccc
    30961 gccatgattg ccccaccgcc tacgtagaca accggttttt ttgccactac cagcgtttgc
    31021 agagcacgct taatttgccc tttatgtccg gtagtagtgg gattgtaaga acgcatactg
    31081 accgactccg gccagacata gggtaatttg ttcgccggat taagaatatc tttcggtaaa
    31141 tcaacgacta ctggtccagg acgaccactt gccgccagcc agaaagcctt tttcagcacc
    31201 tgcggaatgt cttccgtttg cttaaccaga aaactgtgtt taaccactgg tcgcgaaatc
    31261 cccaccatgt cgcactcctg aaaggcatcg taacctatca acgaggtcgc tacctgcccg
    31321 gaaaggacaa ctaatggaat ggaatccata taagcggtgg cgatgccggt aatcgcattg
    31381 gtcgcccctg gacccgacgt taccagcacg acgccgactt ccccggtcgc gcgcgccaga
    31441 ccatcggcca tatgcactgc cgcctgctca tgacgaacta aaacatgatc gataccaccc
    31501 acggtatgca atgcatcgta aatatcaagg actgcgcctc caggataacc gaatacttgt
    31561 ttaacgccct gatcgataag cgatcggacg accatctcgg ctccagacaa catctccatg
    31621 gcctgcctca ctgtttgatg gaaaaaatgt gtaaaacaca ttaaccgtcc gatcttgctt
    31681 aagcaattgg cagccagaga cataaacgca gggtaataag aataaacagg aggaaagatg
    31741 aaaagaaacg ataaaatcct ccattacgaa ggattaaatt gataataaat cggctgaatc
    31801 ccacaactta cagcaatttc tctatttttt taattaatcc taaaatagag agcccacaca
    31861 ttcagaataa aattctacat tcaataaaaa atgcagaata aaccagacat tcatgtctga
    31921 cctattctgc attcagttag cgtttgcaaa ttgagactaa ttgttcttcc atccactgat
    31981 ggcctttatc gcgcccggca gcttcatgcc atgagagata acaggttctg ctgttttgtt
    32041 ttaacggcag cggtaatacc tgtaattcta aggattcagc gaactcttca gccagccaac
    32101 gcggcgcaat agcgaccaaa tgcgtttgcg acaccacgct aagtacgctc atcattgcca
    32161 tgccctgata cgcgatactg gcttgcttat ctaccgtgtc ataccaaggt tgactaaatg
    32221 acgcgaaacg atcgagcgaa accgccgcat gttgttcgtt ataaacatca tgtttcagta
    32281 acgggccttt aattgttgga tgatttttgc tggctaccag caccatttca tctttaaata
    32341 atggcacgct ggtaaattca ggacgatgga agtcttcata actaatcaca aactccgttt
    32401 cctgataacg cagctgatgt tcagtgttct gatttaatga agacttgaac ataacatgta
    32461 tatttggcgc aatctgctca atgtgattat aaatctgcga ggtcagaatg ctgtctaacg
    32521 ggctgcaaac acaaagatga aatacacgtt cactactcgc gggttcaaaa cctgaaccag
    32581 gcaattcatt ttgtactagt tgcaatgcct ggcgaactga accaaaaagt tgaaatgcgc
    32641 gagcagtcgg ttgaatacca cggccataac gaacaaaaag ctcgtcatta aacatcacct
    32701 tcaggcgtgc aacagcgtta ctgaccgcag gttgcgacat acccagaaca tgagcggcac
    32761 gggtaatgtt ttgctcctgc atcacggcat cgaaaacggt taataagttg agatcgacca
    32821 tgcgtagctg tggcttgctt aactccgccg tctctgaatg atctgtttgt acctctggca
    32881 tacttaactc cactgtcaca cttaactccc tttcccttat tggaatgcag agaaataatc
    32941 ctgaagaata tgatttatca t
//
LOCUS       DAJVSY010000028        32489 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.028, whole genome shotgun sequence.
ACCESSION   DAJVSY010000028 DAJVSY010000000
VERSION     DAJVSY010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 32489)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32489)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32489
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.028"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            197..991
                     /gene="panB"
                     /locus_tag="OQQ19_001201"
     CDS             197..991
                     /gene="panB"
                     /locus_tag="OQQ19_001201"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000805487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HCS1802896.1"
                     /translation="MKPTTIASLQKCKQDKKRFATITAYDYSFAKLFADEGLNVMLVG
                     DSLGMTVQGHDSTLPVTVADIAYHTASVRRGAPNCLLLADLPFMAYATPEQAFENAAT
                     VMRAGANMVKIEGGEWLVETVKMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAG
                     DQLLSDALALEAAGAQLLVLECVPVELAKRITEALAIPVIGIGAGNVTDGQILVMHDA
                     FGITGGHIPKFAKNFLAETGDIRAAVRQYMAEVESGVYPGEEHSFH"
     gene            1003..1854
                     /gene="panC"
                     /locus_tag="OQQ19_001202"
     CDS             1003..1854
                     /gene="panC"
                     /locus_tag="OQQ19_001202"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HCS1802897.1"
                     /translation="MLIIETLPLLRQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEA
                     KARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNG
                     TETHTYVDVPGLSTMLEGASRPGHFRGVSTIVSKLFNLVQPDIACFGEKDFQQLALIR
                     KMVADMGFDIEIVGVPIMRAKDGLALSSRNGYLTAEQRKIAPGLYKVLSSIADKLQAG
                     ERDLDEIIAIAGQELNEKGFRADDIQIRDADTLLEVSETSKRAVILVAAWLGDARLID
                     NKIVELA"
     gene            complement(2146..3042)
                     /gene="rpnC"
                     /locus_tag="OQQ19_001203"
     CDS             complement(2146..3042)
                     /gene="rpnC"
                     /locus_tag="OQQ19_001203"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnC"
                     /protein_id="HCS1802898.1"
                     /translation="MDAPSTTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTL
                     HLESGSFIEESLKGHSTDVLYSVQMQGNPGYLHVVIEHQGKPDKKMAFRMMRYSIAAM
                     HRHLEADHDKLPLVVPILFYQGEATPYPLSMCWFDIFYSPELARRVYNSPFPLVDITI
                     TPDDEIMQHRRIAILELLQKHIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQR
                     GHTEQADLFYGVLRDRETGGESMMTLAQWFEEKGIEKGIQQGRQEERQEFAQRFLSKG
                     MSREDVAEMTNLSLAEIDRLIN"
     gene            3316..3696
                     /gene="panD"
                     /locus_tag="OQQ19_001204"
     CDS             3316..3696
                     /gene="panD"
                     /locus_tag="OQQ19_001204"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HCS1802899.1"
                     /translation="MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAI
                     DIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWR
                     PNVAYFEGDNEMKRTAKAIPVQVA"
     gene            complement(3700..4900)
                     /locus_tag="OQQ19_001205"
                     /pseudo
     CDS             complement(3700..4900)
                     /locus_tag="OQQ19_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001727225.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
     gene            complement(4995..5435)
                     /locus_tag="OQQ19_001206"
     CDS             complement(4995..5435)
                     /locus_tag="OQQ19_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HCS1802900.1"
                     /translation="MLGWVITCHDDRAQEILDALEKKHGALLQCRAVNFWRGLSSNML
                     SRMMCDALHEADSGEGVIFLTDIAGAPPYRVASLLSHKHSRCEVISGVTLPLIEQMMA
                     CRETMTSSEFRERIVELGAPEVSSLWHQQQKNPPFVLKHNLYEY"
     gene            complement(5540..6310)
                     /locus_tag="OQQ19_001207"
     CDS             complement(5540..6310)
                     /locus_tag="OQQ19_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001747261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1802901.1"
                     /translation="MMHLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGN
                     LIGSRIGDMHGFSYMQFIVPGLIMMSVITNAYANVASSFFGAKFQRNIEELLVAPVPT
                     HVIIAGYVGGGVARGLFVGILVTAISLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLN
                     GVFAKTFDDISLVPTFVLTPLTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGF
                     LGINDVPLATTFGVLVVFIVVFYLICWSLIQRGRGLRS"
     gene            complement(6307..7233)
                     /locus_tag="OQQ19_001208"
     CDS             complement(6307..7233)
                     /locus_tag="OQQ19_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1802902.1"
                     /translation="MTIALELQQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGK
                     STTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQ
                     AGYYGVERKEAYIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLIL
                     DEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENT
                     SMKALLAKLKLETFILDLAPKSPLPKLDGYQYRLVDTATLEVEVLREQGINSVFTQLS
                     EQGIQVLSMRNKANRLEELFVSLVNEKQGDRA"
     gene            7342..8004
                     /gene="can"
                     /locus_tag="OQQ19_001209"
     CDS             7342..8004
                     /gene="can"
                     /locus_tag="OQQ19_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HCS1802903.1"
                     /translation="MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPHFLWIGCSD
                     SRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCG
                     GVQAAVENPELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNLGH
                     STIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNRETLEQRYRHGISNLKLKHAN
                     HK"
     gene            complement(8045..8581)
                     /gene="hpt"
                     /locus_tag="OQQ19_001210"
     CDS             complement(8045..8581)
                     /gene="hpt"
                     /locus_tag="OQQ19_001210"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004204384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HCS1802904.1"
                     /translation="MKHTVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRG
                     SFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDII
                     DSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDY
                     AQRYRHLPYIGKVILLDE"
     gene            8787..11177
                     /gene="gcd"
                     /locus_tag="OQQ19_001211"
     CDS             8787..11177
                     /gene="gcd"
                     /locus_tag="OQQ19_001211"
                     /EC_number="1.1.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinoprotein glucose dehydrogenase"
                     /protein_id="HCS1802905.1"
                     /translation="MAINNTGSRRLLVTLTVLFAALCGLYLLIGGGWLVAIGGSWYYP
                     IAGLVMLGVAWMLWRSKRAALWLYAALLLGTMIWGVWEVGFDFWALTPRSDILVFFGI
                     WLILPFVWRRLVIPASGAVAALVVALLISGSILTWAGFNDPQEINGTLSADATPTEAI
                     SPVADQDWPAYGRNQEGQRFSPLKQINADNVHNLKEAWVFRTGDVKQPNDPGEITNEV
                     TPIKVGDTLYLCTAHQRLFALDAASGKEKWHYDPKLKTNESFQHVTCRGVSYHEAKAE
                     TASPEVMADCPRRIILPVNDGRLIAINAENGKLCETFANKGVLNLQSNMPDTKPGLYE
                     PTSPPIITDKTIVMAGSVTDNFSTRETSGVIRGFDVNTGELLWAFDPGAKDPNAIPSD
                     EHTFTFNSPNSWAPAAYDAKLDLVYLPMGVTTPDIWGGNRTPEQERYASSILALNATT
                     GKLAWSYQTVHHDLWDMDLPAQPTLADITVNGQKVPVIYAPAKTGNIFVLDRRNGELV
                     VPAPEKPVPQGAAKGDYVTPTQPFSELSFRPKKDLSGADMWGATMFDQLVCRVMFHQM
                     RYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPNREVAIANPMALPFVSKLIPRGPGN
                     PMEQPKDAKGTGTESGIQPQYGVPYGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEV
                     VWKKRIGTPQDSMPFPMPVPVPFNMGMPMLGGPISTAGNVLFIAATADNYLRAYNMSN
                     GEKLWQGRLPAGGQATPMTYEVNGKQYVVISAGGHGSFGTKMGDYIVAYALPDDVK"
     gene            complement(11224..12774)
                     /gene="cueO"
                     /locus_tag="OQQ19_001212"
     CDS             complement(11224..12774)
                     /gene="cueO"
                     /locus_tag="OQQ19_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HCS1802906.1"
                     /translation="MQRRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDA
                     RNRIQLTIGAGQSTFGEKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHW
                     HGLEVPGEVDGGPQGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLV
                     VIEDDEILKLMLPKQWGIDDVPVIVQDKKFNADGQIDYQLDVMTAAVGWFGDTLLTNG
                     AIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVL
                     MGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPDTL
                     SSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGN
                     MNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAKGQYERWVISGVGDMMLHPFHIHGT
                     QFRILSENGKPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDT
                     GMMLGFTV"
     gene            12940..13287
                     /locus_tag="OQQ19_001213"
     CDS             12940..13287
                     /locus_tag="OQQ19_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacC family pilotin-like protein"
                     /protein_id="HCS1802907.1"
                     /translation="MKTFFRTVLFGSLMAVCANSYALSESEAEDMADLTAVFVFLKND
                     CGYQNLPNGQIRRALVFFAQQNQWDLSNYDTFDMKALGEDSYRDLSGIGIPVAKKCKA
                     LARDSLSLLAYVK"
     gene            13393..14259
                     /gene="speE"
                     /locus_tag="OQQ19_001214"
     CDS             13393..14259
                     /gene="speE"
                     /locus_tag="OQQ19_001214"
                     /EC_number="2.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine aminopropyltransferase"
                     /protein_id="HCS1802908.1"
                     /translation="MAEKKQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFG
                     RVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVE
                     SITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCT
                     DPIGPGESLFTSAFYEGCKRCLNPSGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGF
                     YQAAIPTYYGGIMTFAWATDNDALRHLSTEIIQARFLASGLKCRYYNPAIHTAAFALP
                     QYLQDALASQPS"
     gene            14275..15069
                     /gene="speD"
                     /locus_tag="OQQ19_001215"
     CDS             14275..15069
                     /gene="speD"
                     /locus_tag="OQQ19_001215"
                     /EC_number="4.1.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine decarboxylase"
                     /protein_id="HCS1802909.1"
                     /translation="MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYN
                     ANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLP
                     ETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDI
                     VTIDYRVRGFTRDINGMKHFIDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKML
                     LKEFDLKHYMFHTKPEDLTDSERQEITAALWKEMREIYYGRNMPAV"
     gene            complement(15106..15468)
                     /locus_tag="OQQ19_001216"
     CDS             complement(15106..15468)
                     /locus_tag="OQQ19_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414661.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacL family protein"
                     /protein_id="HCS1802910.1"
                     /translation="MDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQ
                     AAHALKGSERSWQRAGHEYTLWMDGEEVMVRANQLEFAGDEMEEGMNYYDEESLSLCG
                     VEDFLQVVAAYRNFVQQK"
     gene            complement(15643..18240)
                     /gene="acnB"
                     /locus_tag="OQQ19_001217"
     CDS             complement(15643..18240)
                     /gene="acnB"
                     /locus_tag="OQQ19_001217"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HCS1802911.1"
                     /translation="MLEEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEF
                     LLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGYNIHPL
                     IDALDDAKLAPIAAKALSHTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRP
                     ALAEKLTVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVG
                     PIKQIEALQQKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGG
                     KIAPIFFNTMEDAGALPIEVDVSNLNMGDVIDVYPYKGEVRNHETGELLATFELKTDV
                     LIDEVRAGGRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRA
                     CGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPK
                     PVDVNTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISF
                     PAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVE
                     KKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNI
                     VLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYAAVIDIDLADIKEPIL
                     CAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAAGKLLDAHKGQLPTRLWVAPP
                     TRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLG
                     TGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDTYRYLNFNQLSQYTEKA
                     DGVIFQTAV"
     gene            18595..20448
                     /locus_tag="OQQ19_001218"
     CDS             18595..20448
                     /locus_tag="OQQ19_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3300 domain-containing protein"
                     /protein_id="HCS1802912.1"
                     /translation="MKMTLPFKPHVLALICSAGLCAASAGLYIKSRTVEAAVETQSTQ
                     LAVSDAAAVTLPATVSAPPVTPAVVKSAFSTAQIDQWVAPVALYPDALLSQVLMASTY
                     PANVAQAVQWSHDNPLKQGDAAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNL
                     GDAFLAQPQDVMDSVQRLRQLAQQTGSLKSSNEQKVITTTKKAVPVKQTVTAPVIPSN
                     TVLTASPVITEPATTVISIEPANPDVVYIPNYNPTVVYGNWANTAYPPVYLPPPAGEP
                     FIDSFVRGFGYSMGVATTYALFSSIDWDDDDHDHHHHDDDDYHHHDGGHRDGNGWQHN
                     GDNINIDVNNFNRITGEHLTDKNMAWRHNPNYRNGVPYHDQDMAKRFHQTDVNGGMSA
                     TQLPAPTRDSQRQAAASQFQQRTHAAPVITRDTQRQAAAQRFNEAEHYGSYDDFRDFS
                     RRQPLTQQQKDAARQRYQSASPEQRQAVRERMQTNPQIQQRREAARERIQPASPEQRQ
                     AVREKMQTNPQIQQRRDAARERIQSASPEQRQVFKEKVQQRPLNQQQRDNARQRVQSA
                     SPEQRQVFRERVQESRPQRLNDSNRTARLNNDQRSAVRERLSERGARRLER"
     gene            complement(20519..21943)
                     /gene="lpdA"
                     /locus_tag="OQQ19_001219"
     CDS             complement(20519..21943)
                     /gene="lpdA"
                     /locus_tag="OQQ19_001219"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HCS1802913.1"
                     /translation="MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGV
                     CLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLA
                     GMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDP
                     RIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDI
                     VKVFTKRISKKFNLMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPN
                     GKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV
                     IAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDC
                     ADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE
                     SVGLAAEVFEGSITDLPNPKAKKK"
     gene            complement(22268..24160)
                     /gene="aceF"
                     /locus_tag="OQQ19_001220"
     CDS             complement(22268..24160)
                     /gene="aceF"
                     /locus_tag="OQQ19_001220"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex
                     dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HCS1802914.1"
                     /translation="MAIEIKVPDIGADEVEITEILVKVGDKVEAEQSLITVEGDKASM
                     EVPSPQAGIVKEIKVSVGDKTQTGALIMIFDSADGAADAAPAQAEEKKEAAPAAAPAA
                     AAAKDVNVPDIGSDEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEI
                     KVNVGDKVSTGSLIMVFEVAGEAGAAAPAAKQEAAPAAAPAPAAGVKEVNVPDIGGDE
                     VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIM
                     IFEVEGAAPAAAPAKQEAAAPAPAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLIR
                     RLAREFGVNLAKVKGTGRKGRILREDVQAYVKEAIKRAEAAPAATGGGIPGMLPWPKV
                     DFSKFGEIEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITELEAFRKQQNEEAAK
                     RKLDVKITPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYINIGVAVDTPNGLVV
                     PVFKDVNKKGIIELSRELMTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVN
                     APEVAILGVSKSAMEPVWNGKEFVPRLMLPISLSFDHRVIDGADGARFITIINNTLSD
                     IRRLVM"
     gene            complement(24175..26838)
                     /gene="aceE"
                     /locus_tag="OQQ19_001221"
     CDS             complement(24175..26838)
                     /gene="aceE"
                     /locus_tag="OQQ19_001221"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008814576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HCS1802915.1"
                     /translation="MSERFPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEA
                     RKGGVNVAAGTGISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDL
                     ELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQ
                     EQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLK
                     DTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKII
                     NELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYV
                     REHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAHSI
                     KGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHT
                     YLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLK
                     NKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQIL
                     QEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFL
                     IGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEK
                     QENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETIEGSKGKVQLLGSGSILRHVR
                     EAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMNDAPA
                     VASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGE
                     LAKRGEIDKKVVADAIAKFNIDADKVNPRLA"
     gene            complement(26999..27763)
                     /gene="pdhR"
                     /locus_tag="OQQ19_001222"
     CDS             complement(26999..27763)
                     /gene="pdhR"
                     /locus_tag="OQQ19_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex transcriptional
                     repressor PdhR"
                     /protein_id="HCS1802916.1"
                     /translation="MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQF
                     DVSRPSLREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDLLE
                     TRHALEGIAAYYAALRSTDEDKERIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEA
                     AHNVVLLHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAR
                     EASHRHLAFIEEILLDRSREESRRERSLRRLEQRKN"
     gene            28304..29677
                     /gene="aroP"
                     /locus_tag="OQQ19_001223"
     CDS             28304..29677
                     /gene="aroP"
                     /locus_tag="OQQ19_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transporter AroP"
                     /protein_id="HCS1802917.1"
                     /translation="MMEGQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSA
                     GPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVL
                     YVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIK
                     VIAVVAMIIFGGWLLFSGNSGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLE
                     LVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIF
                     HELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPV
                     NTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQG
                     VVTRFPALLYPLGNWICLLFMAAVLVIMLMTPGMAISVYLIPVWLIVLGIGYLFKEKT
                     AKAVKAH"
     gene            complement(29720..30574)
                     /gene="ampE"
                     /locus_tag="OQQ19_001224"
     CDS             complement(29720..30574)
                     /gene="ampE"
                     /locus_tag="OQQ19_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase regulator AmpE"
                     /protein_id="HCS1802918.1"
                     /translation="MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTL
                     GMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRND
                     SHARVTMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGIWGPV
                     TLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKAL
                     PAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIAL
                     LTIYGALV"
     gene            complement(30571..31122)
                     /gene="ampD"
                     /locus_tag="OQQ19_001225"
     CDS             complement(30571..31122)
                     /gene="ampD"
                     /locus_tag="OQQ19_001225"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HCS1802919.1"
                     /translation="MLLEQGWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFG
                     GPWIDALFTGTIDPQAHPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQY
                     QGRERCNDFSIGIELEGTDTLAYTDAQYQQLAAVTRALIDRYPDIANNMTGHCDIAPD
                     RKTDPGPAFDWARFRALVSKETT"
     gene            31210..32103
                     /gene="nadC"
                     /locus_tag="OQQ19_001226"
     CDS             31210..32103
                     /gene="nadC"
                     /locus_tag="OQQ19_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HCS1802920.1"
                     /translation="MPPRRYNPDTRRDELLERINLDIPGAVAQALREDLGGTVDANND
                     ITAKLLPENSRSHATVITRENGVFCGKRWVEEVFIQLAGDDVTIIWHVDDGDVINANQ
                     PLFELEGPSRVLLTGERTALNFVQTLSGVASKVRHYVELLEGTNTQLLDTRKTLPGLR
                     SALKYAVLCGGGANHRLGLSDAFLIKENHIIASGSVRQAVEKASWLHPDAPVEVEVEN
                     LEELDEALKAGADIIMLDNFETEQMREAVKRTNGKALLEVSGNVTDKTLREFAETGVD
                     FISVGALTKHVQALDLSMRFR"
     gene            32306..>32489
                     /locus_tag="OQQ19_001227"
     CDS             32306..>32489
                     /locus_tag="OQQ19_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HCS1802921.1"
                     /translation="MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQ
                     TFVPYRTAVELCALEHG"
BASE COUNT         7833 a         8833 c         8004 g         7819 t
ORIGIN      
        1 gccacgctac aacaggatgg aactatacca atagaagctg gtgagtttaa agccaccagt
       61 actttccagg taacctaccc ttaataagtc caccgcaccg ccatcatctg gcggtgcggt
      121 aattgataaa tcattgcccc caccaatgtg actgataaaa tgccaggcaa cacgacatca
      181 tttatcagga cacgttatga aaccgaccac cattgcttca cttcagaaat gtaagcagga
      241 taaaaagcgt ttcgcgacca tcaccgctta cgactacagc ttcgcgaaac tatttgctga
      301 tgaaggactt aacgtcatgc tggtaggcga ctcgctgggc atgacggttc agggtcacga
      361 ctccaccctg ccggtgaccg ttgccgatat cgcctaccac actgcctccg tacgtcgtgg
      421 tgcgccaaac tgcctgctgt tggctgacct gccgtttatg gcgtatgcca cgccggaaca
      481 agcctttgaa aacgccgcaa cggttatgcg tgccggtgcc aatatggtca aaattgaggg
      541 cggtgagtgg ctggtcgaaa ccgtaaaaat gctgaccgaa cgtgccgttc ctgtatgtgg
      601 tcacttaggt ttaaccccac agtcagtgaa tattttcggt ggctacaaag ttcaggggcg
      661 cggcgatgaa gcgggcgatc aactgctcag cgatgcatta gccttagaag ccgctggggc
      721 acagctgctg gtgctggaat gcgtgccggt tgaactggca aaacgtatta ccgaagcact
      781 ggcgatcccg gttattggca ttggcgcagg caacgtcact gacgggcaga tcctcgtgat
      841 gcacgacgcc ttcggcatta ccggcggtca cattcctaaa ttcgctaaaa atttcctcgc
      901 cgaaacgggc gacatccgcg cggctgtgcg gcagtatatg gctgaagtgg agtccggcgt
      961 ttatccgggc gaagaacaca gtttccatta aggagtcacg ttgtgttaat tatcgaaacc
     1021 ctgccgctgc tgcgtcagca aattcgccgc ctgcgtatgg aaggcaagcg cgtggcgctg
     1081 gtgcctacta tgggtaatct gcacgatggc catatgaagc tggtcgacga agccaaagcc
     1141 cgcgccgatg tggtcgtcgt cagtattttc gttaacccga tgcagttcga ccgcccggaa
     1201 gatctggcac gttatccacg gaccttgcag gaggactgcg agaagctaaa caaacgtaaa
     1261 gtggatttag ttttcgcccc ttcggtaaaa gagatctacc cgaacggtac tgaaacccat
     1321 acttacgttg acgttcccgg gctttcgacc atgctggaag gcgcgagccg tccggggcat
     1381 tttcgcggcg tttcgactat cgtcagcaag ctgtttaacc tggtccagcc ggacatcgcc
     1441 tgcttcggtg aaaaggactt tcagcaactg gcgctaatcc gcaaaatggt tgccgatatg
     1501 ggcttcgata ttgaaattgt cggcgtcccg attatgcgcg ccaaagatgg ccttgcgctc
     1561 agttcccgta atggttatct gacggcggaa caacgcaaaa ttgcgcccgg tctgtacaaa
     1621 gttttaagtt caattgccga caaattgcag gctggcgagc gggatcttga tgaaattatt
     1681 gccattgcag ggcaagaact gaatgaaaaa ggcttccgcg ccgatgatat tcagattcgc
     1741 gatgccgaca cgttgctgga agtctctgaa accagcaaac gagctgtaat tctggtagcc
     1801 gcctggcttg gcgatgcccg cctgatcgac aacaaaatcg tcgaactggc gtaatgcttt
     1861 tactctaaat aattcaagtt gcaggaaggc ggcaagcgag tgacaaattc gtcaggaacg
     1921 aatttgccca gccgcaggct ggccttcggt gagagacatg gatgtctctc attaatcccc
     1981 aggagcttac ataagtaagt gactggggtt agcgaacgca gacacagcac atgcaattta
     2041 aagtatgacg agtataactg gcgctacggc tgatggcgcc aattattaat ttgccccacg
     2101 tcatggcgat ggcgtctgta agcaattatt cataacgcag acaacttagt taatcagcct
     2161 atcaatctca gcaagagata aatttgtcat ctctgcaacg tcttcccgag acatcccttt
     2221 actcagaaaa cgctgggcga attcttgcct ttcctcctgt cttccctgct gaatcccctt
     2281 ctcaatccct ttctcttcaa accactgcgc cagcgtcatc atagactccc ctcccgtttc
     2341 cctgtctctc agcacaccat aaaacaaatc cgcttgttca gtatgaccgc gttgcagcat
     2401 atagttttgc atggcaacta actgacttcc gctagtgtac ccttcgtcaa tcagcgtgac
     2461 cagttgctcc agcaataaca ttaagtcgcg ctggcgaata tgtttttgca gtagttcgag
     2521 aatcgcaatc cgccgatgtt gcatgatttc gtcatccggt gtgatggtga tatccaccag
     2581 cgggaaagga ctgttataga cgcgtcgtgc cagctccggc gagtaaaata tatcaaacca
     2641 gcacattgag agcggataag gtgtggcctc gccctgataa aacagtatcg gcaccaccag
     2701 cggcagctta tcgtgatccg cctccagatg ccggtgcatg gcagcaatag aataacgcat
     2761 catgcgaaag gccattttct tatccggctt gccttggtgt tcaatcacaa catgcagata
     2821 accgggattg ccctgcattt gcacggaata gagcacgtcc gtgctgtgtc ctttcaggct
     2881 ctcttcaatg aaactccccg actctaaatg aagcgtgttg aggtcacaaa gttctcgtaa
     2941 ttccactggc aaatgtatct ccagaaagtc gcgagccgtc tccgcgtgca ttaaaaattg
     3001 tttaaacact gcatcatgcg gtgtggtact cggtgcatcc atcttccctg ccttccgtgt
     3061 tgtcttgcgt gaaggcagta tccagtcaag gcgtgccatc gtcagccacc tctttagtgt
     3121 ttaccgagca gcgttcagag aaatttcaat tggttacagc cgttacatgg cacgcttcgg
     3181 cacggtacgc aaactgctga tgtaaatgcc gtcagatgag tagacactaa acaaaaatcg
     3241 ggcaatactg cgtgagaatt tcctcaaagc aggcatcgcc tgcttcgtta acgacagggt
     3301 agaaaggtag aagttatgat tcgcacgatg ctgcagggca aactccaccg cgtgaaagtg
     3361 actcatgcgg acctacacta tgaaggttct tgcgccattg accaggattt tcttgacgca
     3421 gccggtattc tcgaaaacga agccattgat atctggaatg tcaccaacgg caagcgtttc
     3481 tccacttatg ccatcgcggc agaacgcggt tcgagaatta tttctgttaa cggtgcggcg
     3541 gcccactgcg ccagtgtcgg cgatattgtc atcatcgcca gcttcgttac catgccagat
     3601 gaagaagctc gcacctggcg acccaacgtc gcctattttg aaggcgacaa tgaaatgaaa
     3661 cgtaccgcga aagcgattcc ggtacaggtt gcttgattgt tatccctgcg gctggttact
     3721 caccagccgc gacatcgtct ccagcgaatc cgttcttaag atataaagtc gttttagtaa
     3781 caacggatta tcccccggtt ttactttgcc tttcatggtt gtcaccgcca ggtgaaatcc
     3841 ggcatcgttt gctgccttca cggctttgtc attaaatccg ccaaacggat acgaaagata
     3901 ccagacatgc ggattaaatt gcgccagagc gcggcgtgaa cgtgcaaaat caaacagaat
     3961 attgtgttca ctacggctcg gtaatatggg gcggcgataa ccatccaccc gatgcaaaaa
     4021 atgggtatgt gactggaaat caaaaacatc gcgaatttcg ttaagttcag aaacgctcat
     4081 aaattgcagc gattttgggt cccacttctg cgggtgacgt ttgatgcgcg aggtaacaat
     4141 aaacgccgtc gccttcatgc catattgttt caacacggga tacgcatagc ggctcaccga
     4201 tttgaggcca tcatcaaagg taatcaccac cgctcgcgca gggagattga tcttattctt
     4261 cacgtaacct tccagctgca ccatgctcag tgtcgcgtat cccctgtcgc gcagccaggc
     4321 catctggtta ttgaaagcgc gtactgaggt ggtcgtcgaa gtatggcgaa aacgggtgtt
     4381 ttcttcatcg cgcagaatat ggtgataggt tagcaccggc aggccattat cgggttgggc
     4441 atccagcgcg ctgatatagg ccagtcgatc gccaatacgg atctgatacc aggtttgatt
     4501 taacctgtct ttcagtttat gcaaaatcgg gtagcgcaaa ttgtccgcca gtaccccata
     4561 atggcgcact gcccgcactc ggcgcgttat agaccggcgt atctttccag gtaattaagt
     4621 tctgattact cagcggcttg ttgaggtcac ccaaaccgtc ttcaactttt tgtcgcccct
     4681 gaactggctc gagatgccct ttatcgataa accctttacc aaagccaaaa ttaaatgcgt
     4741 aataacttgc ggcagtgggc tccacggcaa tgatttgccc ggcccgaata ttccccacgg
     4801 tcaccatctt gtcgccaatt tgcgcccaga tcgcagcatt ttcgatggtt tgcatataac
     4861 gggcaggtaa cgcggcacta acgcttgcgg taaacagcat cagcaggatg aataacagct
     4921 tgtttataca tgaaaaaata accgagggtg aaacaacgct tgtattgtag caaaagcgcc
     4981 atcagaatcg cgggttaata ctcatacaaa ttatgtttga ggacaaaagg cggatttttt
     5041 tgttgttggt gccaaagact actcacctcc ggcgcaccca gttcgacaat acgctcgcga
     5101 aactctgaac tggtcatggt ttcacggcaa gccatcatct gttcaattaa cggtaacgtg
     5161 acaccagaaa tcacttcaca acgggagtgt ttatggctta ataatgaagc cacgcggtac
     5221 ggtggcgctc cggctatatc ggttaagaag atgacaccct caccagagtc cgcttcatgc
     5281 agagcatcgc acatcatgcg gctgagcata ttagagctta atccgcgcca gaaattcacg
     5341 gcccggcact gaagaagtgc cccatgtttt ttctccagcg catccagtat ctcttgcgcc
     5401 cggtcatcgt gacaggtaat tacccaacct aacatcgcct tcctccttag ccgaaaatca
     5461 gtctatcctg accattgttg ataaagggtg atagccgtca aaactcctct cccccgaatc
     5521 cagaggagag gaaatagcct tagctacgca aaccacgtcc acgttggatc agcgaccaac
     5581 agatcaaata aaacaccaca ataaagacca ccagtacgcc aaaggtagtg gccagcggca
     5641 catcatttat accgaggaag ccgtagcgga aaccactgat catataaacg attgggttca
     5701 ggtgcgacag cccttgccag aacggcggca acaaagtcag ggagtaaaac accccgccca
     5761 aatacgtgag tggcgttaac acaaaggttg gcaccaggct gatgtcatcg aacgttttgg
     5821 caaacacgcc gttcagcaaa cccgcaaggg agaatagcac cgccgtgagc accagggtta
     5881 aggcaacgaa tacccacgaa tgcacctgaa acggcacaaa aaacagtgaa attgccgtca
     5941 ccagaatgcc aacaaacaga ccacgcgcca cgccaccgcc gacatatccg gcaataatga
     6001 cgtgagtcgg aaccggcgct accagcagct cttcaatatt acgctggaac ttggcaccaa
     6061 aaaatgatga cgcgacgtta gcgtaggcat tggtgatcac cgacatcatg atcagccccg
     6121 gtacgatgaa ctgcatatag ctgaagccat gcatatcgcc aatacgcgaa cctatcaggt
     6181 taccgaagat aataaagtaa agggtcatgg tgatgactgg cggcaccagc gtctgcaccc
     6241 agatacgcat aaagcgatgg atctctttcg cccagatgct ttttagcgcc acccagtaaa
     6301 gatgcatcat gcgcgatctc cttgtttttc attaaccagt gaaacaaaca gctcttccag
     6361 acggttagct ttgttacgca tacttaatac ctgaatgccc tgctcactta actgcgtaaa
     6421 tacgctgttg atcccctgct cacgcagcac ttcaacttcc agcgtcgcgg tatcgaccag
     6481 tcgatactga tagccatcga gcttcggtaa cgggcttttc ggtgcgagat cgagaataaa
     6541 ggtttccaat ttcagcttcg ccagcagcgc cttcatcgag gtattttcca ccagctcacc
     6601 gtgttgaata atgccgatat tgcggcacag catttctgct tcttccaggt agtgtgtagt
     6661 gagaatgatg gtggtgcctt tgtcgtttaa atccttcaaa aagccccaca ttgagcggcg
     6721 aagttcaata tccacgcctg cggtcggttc gtcgagaatc agtagtttag gttcatgcat
     6781 taacgcacgg gcaatcatta aacggcgctt catcccgcca gataacatac gcgcacgttc
     6841 gttgcgtttt ccccataaat cgagttgttt gagatatttt tcgctgcgga tgtacgcttc
     6901 tttgcgctcc acgccgtagt accctgcctg attcaccaca atttgctgca cggtttcaaa
     6961 cgggttgaag ttaaattcct gcggcaccag tcccaactga cgtttagcgt tcacgacatc
     7021 cttctcgaga tcgtaaccaa atacgctgac ccgcccggag gttttattta ccagagagct
     7081 gataataccg atagtggtcg atttcccggc cccgttcggc ccgagaagcg cataaaaatc
     7141 acccgcttcg acctgcaaat ctattccacg aagcgcctga acgccgcctg gataggtttt
     7201 tttaagctgt tgaagttcca gtgcaatggt cataaatttt tacttacctt acgttcttac
     7261 actttatctg tggtttaaat cgtcccggag ttaccctata ttagccaaac gtaattattt
     7321 ggttacaggt cgttaacctc catgaaagac atagatacac tcatcagcaa caatgcacta
     7381 tggtcaaaaa tgctggtgga agaggatccc gggttttttg agaaactggc acaagcgcaa
     7441 aaaccgcact ttctatggat tggatgttcc gacagtcgcg ttcctgcaga acgtttaacc
     7501 ggtcttgagc cgggcgaact ctttgttcac cgtaatgttg ctaacctggt cattcacacc
     7561 gacctgaact gcctttccgt ggttcagtat gcagtggatg tactagaagt tgaacacatt
     7621 attatctgtg gccactacgg ttgcggcggc gtacaagccg cagttgaaaa cccggaactg
     7681 gggcttatca acaactggct gctgcatatc cgcgatatct ggttcaaaca tagctcattg
     7741 ctcggcgaaa tgccgcaaga gcgccgtctg gataccttgt gtgaactgaa cgtcatggaa
     7801 caggtgtata acctaggcca ctccaccatt atgcaatcag cgtggaaacg cgggcagaaa
     7861 gttaccattc acggctgggc ctatggcatt cacgacggct tgctgcgtga tctggatgtt
     7921 actgccacca accgcgaaac ccttgagcaa cgttaccgtc acgggatttc caacctcaag
     7981 ctgaaacacg ccaaccacaa ataaaaatgc catgccggat gcaacacatc cggcaacttc
     8041 acacttactc gtccagcaga atcactttgc cgatatacgg cagatgacgg taacgctgtg
     8101 cgtaatcaat gccgtaaccc accacaaact catccgggat cgagaaaccg ataaattcta
     8161 ccgggacgtt cacttcacga cgggacggtt tatccagcag cgtacaaatc gccagcgact
     8221 tcggttcgcg caggcttaag atctcacgca ctttcgacag tgtattcccc gagtcgatga
     8281 tatcttcaac aatcagcacg tccttgccac ggatatcttc atccagatct ttgaggattt
     8341 tcacatcacg ggtggtggac atgccgctac cgtagctgga ggcggtcata aagtcgactt
     8401 catgagatac ctgaacttca cggcacaggt ccgccataaa cataaatgag ccacgcagca
     8461 gacccaccag caccatatcg ctgccgctgt ctttgtaacg ctcagtaatc tgacgaccca
     8521 gttcggcgat acgcgcttta atctccgctt cggggatcat tacttctaca gtatgtttca
     8581 tatctctaac catatgattt aaaaacaaat cacttcgcac gggcaggttt tggcaccgca
     8641 acaaagcgca agacacgcag tataccagta aaactattca ttcgcggaat ctgttaataa
     8701 agctcgaatt gtgatgacga tcacacatgt taaaacctat aattaattgc tactaaaata
     8761 ttaatgaatt gaaatggtgt ctctttatgg caattaacaa tacaggctcg cgacgattac
     8821 tcgtcacgct aacagtcctt tttgcagcgc tttgcgggct gtatctactc attggcggag
     8881 gctggctggt cgcgattggc ggctcctggt actaccctat cgctggcctt gtgatgctcg
     8941 gcgtcgcctg gatgctgtgg cgcagtaaac gtgccgcgct ttggctatac gccgccctgc
     9001 tgctcggcac catgatttgg ggcgtctggg aagttggttt cgacttctgg gcgctgactc
     9061 cgcgcagcga tattctggtc ttcttcggca tctggctgat cctgccgttt gtctggcgtc
     9121 gcctggtcat tcctgccagc ggcgcagttg ccgcactggt ggtggcactg ctgattagcg
     9181 gtagtatcct gacctgggcc ggatttaacg atccgcagga aatcaacggc accttaagcg
     9241 ccgatgccac acctacggaa gctatctcac ccgttgccga tcaggactgg cctgcctatg
     9301 gtcgcaatca ggaaggtcaa cgcttttcac ctctgaaaca aattaacgcc gataacgtcc
     9361 ataatctgaa agaagcctgg gtgttccgta ctggcgatgt gaagcagccg aacgatccgg
     9421 gcgaaatcac caatgaagtg acgccgatta aagtgggcga caccctttac ctgtgtaccg
     9481 ctcaccagcg cctgtttgcg ctcgatgccg ccagcggcaa agagaaatgg cattacgatc
     9541 ctaagctgaa aactaacgag tctttccagc acgtaacctg ccgtggcgtc tcttatcatg
     9601 aagccaaagc agaaacggct tcgccggaag tgatggcgga ttgcccgcgt cgtatcattc
     9661 ttccggtcaa tgatggtcga ctgattgcga ttaacgctga aaacggcaaa ctgtgcgaaa
     9721 ccttcgccaa taaaggcgtg ctcaatctgc aaagcaatat gccagacacc aaaccgggtc
     9781 tgtatgaacc gacttcgcca ccgattatca ccgataaaac catcgtgatg gcaggttcag
     9841 ttaccgataa cttctcaacc cgcgaaacgt ctggcgtgat ccgtggtttt gatgtcaaca
     9901 ccggggagct gctgtgggct tttgatcccg gcgcgaaaga tccgaacgca atcccgtctg
     9961 acgaacacac ctttaccttt aactcgccaa actcctgggc accagcggcc tatgacgcga
    10021 agctggatct ggtctatctg ccgatgggcg tgaccacgcc ggatatctgg ggcggtaacc
    10081 gcacaccgga acaggaacgt tatgccagct cgattctggc gctgaatgcc actaccggga
    10141 aactggcgtg gagctaccag accgttcacc acgacctgtg ggacatggat cttccggcac
    10201 agccgacgct ggcggacatc accgttaatg gtcagaaagt gccagttatt tacgctccgg
    10261 cgaaaaccgg caacattttt gtgctcgatc gtcgcaatgg cgaactggtg gttccggccc
    10321 cggaaaaacc ggtgccgcaa ggtgctgcga aaggcgatta cgttactccg acccagccgt
    10381 tctctgaact gagcttccgt ccgaagaaag atttgagcgg tgcggatatg tggggagcca
    10441 ccatgtttga ccaactggtg tgccgcgtga tgttccacca gatgcgctat gaaggcattt
    10501 tcacgccgcc atctgaacag ggcacgctgg tcttcccggg taacctggga atgtttgaat
    10561 ggggcgggat ttccgttgat ccaaatcgtg aagtggcaat tgccaaccca atggcactgc
    10621 cgtttgtttc gaaactgatc ccacgcggtc cgggtaaccc gatggagcag ccgaaagatg
    10681 ccaaaggcac gggtacggaa tccggcattc agccacagta cggtgtaccg tatggtgtca
    10741 cgctcaaccc gttcctctca ccgtttggtc tgccgtgtaa acagccagca tggggttata
    10801 tctcggcgct ggatctgaaa accaatgaag tggtgtggaa gaaacgtatt ggtacgccgc
    10861 aggacagtat gccgttcccg atgcctgtac cggtgccgtt caatatgggt atgccgatgc
    10921 tgggcgggcc aatctccacg gcgggtaacg tgctgtttat cgccgctacg gcagataact
    10981 acctgcgcgc ttacaacatg agcaacggtg aaaaactgtg gcagggtcgt ttaccagcgg
    11041 gtggtcaggc gacgccaatg acctatgaag tgaatggtaa gcagtatgtg gtgatctccg
    11101 caggcggtca cggttcattt ggtacgaaga tgggcgacta tattgtggct tatgccctgc
    11161 cggatgatgt gaaataacca taatgcccgg agagatccgg gcatatttcc gaatacggtc
    11221 tttttatacc gtaaacccta acatcatccc cgtatcttca tgctccagca gatggcagtg
    11281 cgccatataa gcatgttctt tcggtgcgtc gtgattaaac ttcaccagca cttcactgac
    11341 attgccttct accttaacgg tatctttcca gcccgcgcga tgagccgctg gcggtttgcc
    11401 attttctgac aagatacgga actgcgtgcc gtgaatatgg aacggatgca gcatcatgtc
    11461 gcccacgcca gagataaccc aacgttcgta ctgccctttc gccgccgcaa acatcggctt
    11521 attcatatca aacgcctgac cgttgatttt attggcatgg tggaaatcga acttcccgcc
    11581 gtggttcata tgattcatat taccgtgccc catatggccc atcatctggc tgtgatccat
    11641 tccggccatc gcctgatcgc catatttctc cattagcatc tgcataccca tcatatcgag
    11701 catcgggtcc atagaaagtt gcagcttgcg taccgtcagc ccttccagcg aaggtaacgc
    11761 aggcaggcta cttaatgtgt ctggcaaagc accggaggca ctaatagcaa tcggctgaat
    11821 ccgcattacc ggatgcggct tgtcaaacgg cgcaatcgcc atccccatct ggctgaccgg
    11881 tagcgtcacc aggtcaaagg gtttgttgtc gttaacctcc accagcactt caaaacgctc
    11941 gcccatcagc accggcagct cgctcacctt caccggttca ggtagcagac caccgtcgct
    12001 ggcaatcaca tacagcgggc gattgtcgct ggtggcgaaa ttgagcgagc gggcattaca
    12061 gccattgagc aaacgcaggc gcagccaacc acgcggggca gcgtgttgtg ggtagattgc
    12121 accgttggtc agcagcgtat cgccaaacca gcccacggcg gcggtcatca catccagttg
    12181 ataatcaatc tgcccatcag cgttaaattt tttatcctga acaatcaccg gaacatcatc
    12241 gataccccac tgttttggca gcattaattt caggatctcg tcatcttcaa ttaccaccag
    12301 cccagccaac cccatcgcca cctgtcgccc agtcttgcca tgttgatgtg gatggaacca
    12361 gcaagtagcg gcaggttgat caacgttcaa cgtcaccgag cgcttgccac ctggcggaat
    12421 aattccctgc gggccgccgt cgacttcacc cggtacttcc agcccgtgcc agtgcaacgt
    12481 cgtctcttcc gtcagttggt tatagatatc aaccgttacc gctttgccgc gctgtaattt
    12541 caccgccggc cccagcagat tgccgttata gccccaggta gttgcagttt tctcgccaaa
    12601 ggtagactga cctgcgccaa tagttaactg aatgcgatta cgggcatcgg tcgtgagcaa
    12661 atcagggatc ggtaacgttg ggcgttccgc cgcaaagact gcgcggctcc acagcggcaa
    12721 ggctgaagcc acacccagcg cgacggaata ttttaagaaa tcacgacgtt gcatagttat
    12781 ttccttattc ttaagcaggc gaaacaaaat caaacgttga gcatagtcct tccccttacg
    12841 ggaaggtcaa gccgcagaca caatttaatc gacaataatg gtcgtcgcct cgctcgcagt
    12901 gtgctaacgt ttatcttctt taagcccctg gtagaagcaa tgaagacgtt tttcagaaca
    12961 gtgttattcg gcagcctgat ggccgtttgc gcaaacagtt acgcgctcag cgagtctgaa
    13021 gccgaagata tggccgattt aacggcagtt tttgtctttc tgaagaacga ttgtggttac
    13081 cagaacttac ctaacgggca aattcgtcgc gcactggtct ttttcgccca gcaaaaccag
    13141 tgggatctca gtaattacga caccttcgac atgaaagccc tcggtgaaga cagctaccgc
    13201 gatctcagcg gcattggcat tcccgtcgct aaaaagtgca aagccttggc ccgcgattcc
    13261 ttaagcctgc ttgcctacgt caaataatcc ctgatacctt tttgtagaaa tattgaccgt
    13321 gcatccgcgg tcaatgttag ctattatgtt gcgccctttt tttacgggtg ttaacaaagg
    13381 aggtatcaac ccatggccga aaaaaaacag tggcatgaaa cgctacacga ccagtttggg
    13441 cagtactttg cggtagataa cgttctgtat catgaaaaga ccgatcacca agatctgatc
    13501 atttttgaga acgctgcatt tggtcgcgta atggcgctgg atggcgtagt acaaaccacc
    13561 gagcgcgacg agtttatcta tcatgagatg atgacccatg ttccgctact ggcccacggt
    13621 cacgcgaaac atgtgctgat tatcggcggc ggcgacggtg ccatgctgcg tgaagtaacc
    13681 cgacataaaa acgttgagtc aatcacgatg gtagaaatcg atgcgggtgt cgtgtcgttc
    13741 tgccgtcagt atctgcccaa ccataacgcc ggtagctacg acgatccgcg ctttaagctg
    13801 gtgatcgacg atggcgtcaa tttcgttaat caaaccagcc agacctttga tgtcattatc
    13861 tccgactgca ccgatcctat cggtcccggc gaaagtctgt tcacctcagc attttatgaa
    13921 ggctgcaaac gttgcctgaa tcctagcggt atcttcgtcg cacaaaacgg cgtctgcttt
    13981 ttacagcagg aagaagccat cgacagccat cgcaaactca gccattactt cagcgacgtt
    14041 ggcttttatc aggcggcgat cccgacctat tacggcggta tcatgacttt tgcatgggcg
    14101 acagataacg acgccttacg ccatctctca accgaaatta ttcaggcgcg ttttctcgct
    14161 tctggcctga aatgccgtta ttacaatccg gcaatccata cggcagcttt tgccttacct
    14221 cagtatctgc aagatgcact ggcttcacag ccgtcctaag gagaagataa gaaattgaaa
    14281 aaactgaaac tgcatggctt taataatctg accaaaagtc tgagtttttg tatttacgat
    14341 atctgctacg ccaaaactgc cgaagagcgc gacggttata ttgcttatat cgatgaactc
    14401 tataatgcca accgtctgac cgaaatcctg tcagaaacct gttccattat cggggccaat
    14461 attcttaaca tcgcccgcca ggattacgaa ccacagggtg ccagcgtcac tattctggtg
    14521 agtgaagaac cggttgaccc gaaactcatc gacaaaacag aacaccccgg cccactgcca
    14581 gaaacggtcg ttgcccatct cgataaaagt catatttgcg tacataccta cccggaaagc
    14641 catcctgaag gtggtttatg taccttccgc gccgatattg aagtctctac ctgcggcgtg
    14701 atttctccgc tgaaggcgct gaattacctg atccaccagc ttgagtccga tatcgtaacc
    14761 attgattatc gcgtgcgcgg ttttacccgc gacattaacg gtatgaagca ctttatcgac
    14821 catgagatta attcgattca gaactttatg tctgacgata tgaaggcgct gtatgacatg
    14881 gtggatgtaa acgtctatca ggaaaatatc ttccatacca agatgttgct taaagagttc
    14941 gaccttaagc actacatgtt ccacaccaaa ccggaagatt taaccgacag cgagcgccag
    15001 gaaattaccg ctgcgctgtg gaaagaaatg cgcgagattt attacgggcg caatatgcca
    15061 gctgtttaac ggctctggcg gagctccagg ctccgccaga tttatttact tctgctgcac
    15121 gaaattgcgg taagccgcca cgacctgcag aaaatcctca acgccgcata gcgacaggct
    15181 ttcttcgtcg tagtagttca tcccctcttc catttcatcg ccagcgaatt ccagttgatt
    15241 ggcgcgaacc atcacctctt caccgtccat ccacagggtg tattcatgcc ctgcccgttg
    15301 ccaggaccgt tcgctacctt tcagtgcgtg cgctgcttgt tccacttcat caagcaaggc
    15361 caggttttct ttcacctctt cattaaacca gtgcccgacc acttcatgcc ccatggacat
    15421 acgcaccttt accactccgg taatatcgcg cagaaattcg taatccatag tgtgttcctc
    15481 tgctcccggc aatgcgccga aatcgcattg cgccattgat gtaattatcg cagccttacc
    15541 ggagaaaaac agcggaacgg cgatggttta gaaataaaaa atgcccggga atctcattca
    15601 ccgggcattg tgtcgtttat gcgcagcgcg tgcgcttact tattacaccg cagtctggaa
    15661 aatcacccca tcggcttttt cggtgtactg agaaagttgg ttgaagttca gataacgata
    15721 agtatcaacg gcagttttat ctacttgcgc aacgtaggtc tggtactctt ccggcgtcgg
    15781 cagtttgcca atcagcgccg caacagccgc cagttctgca gaagccagga agacattcgc
    15841 gccagtcccc agacggttcg ggaagttacg ggtagaggtg gaaaccaccg tcgcaccgtc
    15901 tgctacacgc gcctggttac ccatacacag agaacagccc gggatctcga tacgagcccc
    15961 gctcttaccg aagacgctgt agtagccttc ttcagtcaac tgtgcggcgt ccatacgggt
    16021 tggcggtgcc acccacaggc gggtcggcaa ctggccttta tgcgcatcca gcagtttacc
    16081 cgcagcacgg aagtgaccga tgttagtcat gcaagaaccg ataaatactt cgtcgatctt
    16141 ctcgccctgt accgcagaca gcggacgcgc gtcatccggg tcgttcggag cacacaggat
    16201 tggctcttta atatccgcca gatcgatgtc aatcactgcc gcgtattccg catctgcatc
    16261 tgcttccagc agctcaggat tcgccagcca tttttccatg ccctgaatac gacgttccag
    16321 ggtacgacga tcgccgtaac cttccgcgat catccacttc agcaggacga tattagagtt
    16381 aaggtattcg atgattggtt ctttgttcag cttgatagta caaccagcgg cagaacgctc
    16441 agcggacgca tcggtaagct caaaggcctg ctcaactttc agatccggca gaccttcaat
    16501 ttccagaatg cggccagaga agatgttttt cttgcctttc ttctcaacgg tcagcagacc
    16561 ttgtttgatg gcatacagcg gaatggcgtg taccagatcg cgcagggtga tgcccggctg
    16621 cattttgcct ttgaagcgca ccagaacgga ttccggcata tccagcggca ttacgcctgt
    16681 tgcggctgca aatgccacca gaccagaacc cgccgggaaa gagataccga tcgggaaacg
    16741 ggtatgggag tcacctccgg taccgacggt atccggcagc agcatacggt tcagccagga
    16801 gtggattacg ccgtcacccg gacgcagcga cacaccgcca cggttcataa tgaagtccgg
    16861 cagcgtgtgg tgcgtgttca cgtcaactgg cttcggatac gccgcggtgt ggcagaaaga
    16921 ctgcatcacc aggtcagccg agaagcccag gcacgccagg tctttcagtt catcacgggt
    16981 catcgggccg gtagtgtcct gtgaacctac agaagtcatt ttcggttcgc agtacgcgcc
    17041 cggacgaatg cctttcacgc cacaggcacg gcctaccatt ttctgcgcca gcgagaagcc
    17101 gcgatcgctc tcagcgacat ctttcgcctg acggaacaca tcactgtgcg gcagaccaag
    17161 tgcttcacgc gctttggtgg tcaggccacg cccgataatc agcgggatac ggccgccagc
    17221 acgcacttca tcaatcagca cgtcggtttt cagttcgaag gtcgccagca gttcgcctgt
    17281 ttcgtggtta cgcacttcac ctttgtacgg gtaaacgtca atcacgtcgc ccatgttcag
    17341 gttagagacg tcgacttcga ttggcagtgc acccgcgtct tccatcgtgt taaagaagat
    17401 gggtgcaatt ttaccgccga ggcacaaacc accgccgcgt ttgttcggca catgtggaat
    17461 atcatcgccc ataaaccaca gaacggagtt cgtggcggat ttacgcgatg aacccgtacc
    17521 cacaacgtca ccgacgtacg ccagcgggaa acctttctgt tgcagagctt caatctgttt
    17581 gatcgggcca acaacacctg gctggtctgg ctcaatacct tcacgggcgt ttttcagcat
    17641 cgccagcgcg tgcagtggga tatccgggcg cgaccacgca tccggtgccg gagaaaggtc
    17701 atcggtgttg gtttcgccag tgactttgaa gacggtaacg gtcagttttt cagccagcgc
    17761 cgggcgattc agaaaccatt cggcatccgc ccaggactgc attacctgct tcgcatattc
    17821 gttgcctgct ttcgctttct cttctacgtc atagaagtta tcgaacatca gcagtgtgtg
    17881 agaaagtgct ttggcagcga tcggtgccag tttggcatca tccagcgcgt cgatcagcgg
    17941 atgaatgttg taaccaccct gcatggtgcc cagcagttcg atggcttttt ccggagtcag
    18001 cagaggggat ttggcttcgc ctttcgcgat agcagccagg aagcctgctt tgacataggc
    18061 ggcttcatcg acgccagggg gaacacggtt ggttaacaga tctaacagga attcttcttc
    18121 gcccgcgggc gggtttttca gcagctctac aagtgcggcc atttggtttg catccagggg
    18181 tttgggcgca atcccctcag cggcacgctc agctacgtgc ttacggtatt cttctagcac
    18241 gacggttctc ctcgctctca ttgtcatagt gcggcaggcg attctcttca cgctcctgtg
    18301 agacagcagt ttgtagggta aatgcccagt accgcaacgg gcagaatagc aggattttga
    18361 cgacgtgtta atctgtttac aaaaaagcaa cataaaaaag tggctgaatc gttaaggatg
    18421 gtctagagat tgtttccctc cgtaaaaact tcgttaattc gcatggtgat aatcaccttt
    18481 ctcaacgaat cccaagatta gtcaaaattt aaactaccgc ctctttatac tcggattaac
    18541 agcacctgcg ggtggcagtt cgccgaccat tgcgatttcc ttgagatccg aattatgaaa
    18601 atgactttgc cgtttaaacc ccatgtgctg gcactaattt gcagtgccgg gctttgtgcc
    18661 gcctctgccg ggctatatat aaaaagccgc acagtggaag cggctgtgga aacgcaatcg
    18721 acacaactgg ctgtgtctga cgctgccgcg gttacgcttc ctgcaacggt ttccgcgcct
    18781 cccgtaacac ccgccgtcgt taaatccgca ttcagcactg cacaaataga tcaatgggtc
    18841 gcgcccgtcg cgctgtatcc cgacgcccta ctttcgcagg tgctgatggc atcaacctat
    18901 ccggcaaacg ttgctcaagc agtgcaatgg tcgcacgata atccacttaa acaaggcgat
    18961 gctgctattc aggcggtatc tgaccagccg tgggacgcca gcgttaaatc actggtggcc
    19021 tttccacaat tgatggcatt gatgggcgaa aacccgcaat gggtgcaaaa cctgggcgat
    19081 gcttttctgg cgcagccgca ggacgtgatg gactcggtac agcgattgcg gcaactggcg
    19141 caacaaaccg gttcgctgaa gtcatcaaac gaacaaaaag ttattaccac aacgaagaaa
    19201 gctgtaccgg taaaacagac agtcacggca cccgtcatac catccaatac cgttttaact
    19261 gccagccccg tcattacaga gcctgcaaca accgtcattt ccattgagcc cgccaatcct
    19321 gatgtggtct atattcccaa ctacaaccca accgtggttt acgggaactg ggccaatact
    19381 gcgtatccgc cggtttatct gccaccacca gccggagaac cgtttattga cagctttgtg
    19441 cgcggattcg gctatagcat gggtgttgct accacgtacg cactattcag cagcatcgac
    19501 tgggatgacg acgatcatga ccatcatcat catgacgatg atgattatca tcaccacgat
    19561 ggcggtcatc gtgacggtaa tggctggcaa cacaacggcg acaacatcaa tatcgacgtc
    19621 aacaatttca accgtatcac cggtgagcat cttactgata agaatatggc atggcggcac
    19681 aatccaaact accgtaatgg tgtgccctat catgatcagg atatggcaaa gcggtttcat
    19741 caaaccgatg tcaacggcgg aatgagtgcc acgcagctac ctgctccaac acgcgacagc
    19801 cagcgtcagg cggcagcaag tcagtttcag caacgaacac acgccgcccc cgtcattaca
    19861 cgagataccc aacgtcaggc agcggcacag cggtttaatg aagctgaaca ctatgggagc
    19921 tatgacgact tccgcgactt cagccgtcgc caacccctga cccagcaaca aaaggacgcc
    19981 gctcgtcagc gttatcagtc agcttctcct gagcagcgcc aggcagttcg cgagagaatg
    20041 cagactaacc cgcagatcca gcagcgaaga gaggcagcgc gtgagcgcat tcagcccgcc
    20101 tcgcctgagc agcgccaggc agtccgcgag aaaatgcaga ctaacccaca gatccagcag
    20161 cgaagagacg cagcgcgtga gcgtattcag tcagcctcgc ctgagcagcg ccaggtgttt
    20221 aaggaaaaag tacagcagcg cccactgaac caacagcaac gtgataacgc ccgccagcgt
    20281 gttcaatcag catcacctga acaacgtcag gtttttcggg agagagttca ggagagccgc
    20341 ccacaacgtc taaacgacag taaccgtact gccagattga ataacgatca acggtcagca
    20401 gtacgcgaac gtctctctga gcgcggagca aggcgactgg aaaggtaaat tacagacgta
    20461 aaaaaagcgg cgtggttagc cgctttttta attgccggat gttccggcaa acgaaaaatt
    20521 acttcttctt cgctttcggg ttcggcaggt cggtaatgct accttcgaac acttctgccg
    20581 ccaggcccac agactcgtgc agagtcgggt gcgcatggat ggtcagcgcg atgtcttcag
    20641 cgtcacaacc catttcgatt gccaggccga tttcacccag cagctcgccg ccgttggtac
    20701 cgacaatcgc accaccgatc acacggtgag attctttgtc gaaaatcagc ttggtcatac
    20761 cgtctgcgca gtcggaagcg atagcacgac cagaagcagc ccacgggaag gtggcggttt
    20821 catagctgat gcctttctct ttcgcttctt tctcagtcag acctacccat gcaacttctg
    20881 gttcggtata ggcgatagac gggataactt tcggatcgaa gtagtgtttt ttaccggcga
    20941 taacttcagc ggcaacgtga ccttcgtgaa cacctttgtg tgccagcatc ggctgaccaa
    21001 cgatatcgcc gatagcaaag atgtgcggta cgttggtacg cagctgtttg tcaacgcgga
    21061 tgaaaccacg gtcgtccact tccacgccag ctttgcctgc gtcgaggttt ttaccgttcg
    21121 gcacacgacc aatcgctacc agcacggcgt cgtaacgctg cggttcagcg ggtgcttttt
    21181 tgccttccat cgtcacataa ataccgtctt ctttcgcttc aacggcggta actttggttt
    21241 ccagcatcag gttgaatttc ttgctgatac gcttggtgaa gactttaacg atgtctttgt
    21301 cagctgccgg gataacctgg tcgaacattt caaccacgtc aatctgtgaa cccagcgcgt
    21361 ggtatacggt gcccatttcc agaccgatga taccgccacc cattaccagc aggcgttctg
    21421 gtacttcttt cagttccagc gcgtcagtgg agtcccagat acgcggatct tcatgcggaa
    21481 taaacggcag ttggatcggg cgagaacccg ctgcaatgat cgcgttgtcg aagttgatca
    21541 cggttttacc gttctcacct tcaacttcca gggtgttagc cccggtaaat ttacccagac
    21601 cgttgaccac tttgactttg cggcctttcg ccataccagc cagaccaccg gtcagctgat
    21661 tgatcacttt ctctttccag gtacgaatct tgtcaatatc ggttttcggt tcgccgaaga
    21721 cgataccgtg ttcagccagc gctttggctt cttcgataac ttttgctacg tgcagcagtg
    21781 ctttagaagg gatacagccg acgttcaggc aaacaccgcc aagggtgttg taacgttcta
    21841 cgattacggt ttccagacct aaatcagcgc aacggaaggc agcggagtaa cctgcggggc
    21901 ctgccccaag taccacgacc tgagttttga tttcagtact catcatgacc tctatatatt
    21961 tatctccggc ggtcataccc gtcgtctttc aggccgcagc ggcgttagct tcacgccctc
    22021 accccagtca cttacttatg taagcccctg gggattctgg cgcttgctac cttgctgcac
    22081 ccagaaatcc atagggtatg tgaagtaata ccctaaccac caccgggtcg ttctatccgt
    22141 cggtatttta caaaattgtt aacaattttt aaacaacaaa cggcaaccga tttgtctatt
    22201 cgctaataac ctcaatacat tcatgagatt accagaaaaa agccggccgt tgggccggct
    22261 cttttactta catcaccaga cggcgaatgt cagacagcgt gttgttaatg atggtaatga
    22321 aacgggcacc atcagcaccg tcgatcacgc ggtggtcgaa ggagagagaa atcggcagca
    22381 tcagacgcgg cacgaactct ttaccattcc acaccggctc catcgcggac ttggaaacgc
    22441 cgaggatagc cacttccggc gcgttcacaa tcggcgcgaa gtgggtagta cccaggccgc
    22501 cgatgctgga gatggtgaag caaccgccct gcatttcgcc cgcagtcagc ttaccgtcac
    22561 gcgctttctt agaaatagtc atcagctcgc gagacagctc gatgatgcct ttcttgttga
    22621 cgtctttgaa taccggaaca accagaccgt tcggggtatc caccgccaca ccgatgttga
    22681 tgtatttctt cagggtcaga cgctgaccgt cttccgacag cgaactattg aagcgaggca
    22741 tctgctcaag agctgcagca acggctttca tgatgaagac aaccggggtg atcttcacat
    22801 ccagcttacg tttcgccgct tcttcgttct gctgtttacg gaacgcttcc agctcggtga
    22861 tatcggtttt gtcgaagtgg gtaacatgcg ggatcatcac ccagttacgg ctcaggttag
    22921 caccagaaat tttctggata cggcccagtt ccacttcttc gatttcacca aacttgctga
    22981 agtccacctt cggccacggc agcatgcctg ggataccgcc gccagtcgcc gccggagctg
    23041 cttctgcacg tttgatagct tctttcacgt aagcctgaac gtcttcgcgc aggatacgac
    23101 ctttacggcc agtgcccttc actttcgcca ggttaacacc aaactcgcgt gccagacggc
    23161 ggatcagcgg agtcgcgtga acataagcgt cgttttcagc aaattcagat ttgccttccg
    23221 ctttcgcagc tggtgctgct gccggggctt cagcttttgc tgccggtgcc ggcgctgccg
    23281 cttcctgttt cgcaggagct gccgcaggcg ctgcgccttc aacttcgaag atcataatca
    23341 gcgagccagt tttcacttta tcgccaacgt tgactttcag ttccttcacg acgcctgcaa
    23401 acggcgccgg aacttccata gaagctttgt cgccttctac ggtgatcagt gactgttcag
    23461 cggcaacttt gtcgcccact ttcaccatca cttcagtcac ttcaacttcg tcaccgccga
    23521 tatccggaac gttaacttct ttcacgccag ctgctggtgc aggggccgct gccggagccg
    23581 cttcctgttt agccgccgga gctgccgcgc ctgcttcacc cgcgacttcg aagaccataa
    23641 tcagcgagcc ggtagacact ttgtcaccca cgttcacttt gatctctttc acggtgccag
    23701 caaacggagc cggaacttcc atagaagctt tatcgccttc tacggtgatc agcgactgtt
    23761 cagcttcaac tttatcgcca actttcacca ggatttcggt cacttcaact tcgtcgctgc
    23821 cgatatccgg aacgttaacg tcttttgccg ccgcagccgc gggtgctgct gccggagctg
    23881 cttctttctt ctcttctgcc tgagcaggtg cagcgtctgc tgcaccgtcg gcggaatcga
    23941 aaatcataat cagtgcgccg gtctgggttt tatcgccaac agagactttg atctctttaa
    24001 cgatacccgc ctgcggagac ggaacttcca tagaggcttt gtcgccttct acggtgatca
    24061 gcgactgttc ggcttcaact ttgtcgccca ctttgaccag gatctcggtg atttcaactt
    24121 catcagcccc gatgtccggt actttgattt cgatagccat tattctttta cctcttacgc
    24181 cagacgcggg ttaactttat ctgcatcgat gttgaatttg gcgattgcgt cagcaaccac
    24241 tttcttatcg atttcgccac gtttagccag ttcgcccagc gccgcaacca cgacataaga
    24301 agcatcaact tcgaagtggt gacgcaggtt ctcacggctg tcggaacgac cgaagccatc
    24361 agtacccagt acgcggtagt cgtcagccgg tacgtaagta cggacctgct cagcgaacag
    24421 tttcatatag tcggtagatg ccactgccgg agcgtcgttc atcacctgag cgatatacgg
    24481 aacgcgcgga gtttccagcg gatgaagcat gttccagcgt tcacaatcct gaccatcacg
    24541 cgccagctcg gtgaaggagg tcacgctata aacgtcagaa cctacgccgt aatctttcgc
    24601 caggatctct gccgcttcac ggacgtgacg caggatagaa ccggagccca gcagctgaac
    24661 tttacctttg ctaccttcaa tggtttcgag tttgtagata cctttacgga taccttcctc
    24721 agcaccttcc ggcattgccg gcatgtggta gttttcgttc agcgtggtga tgtagtagta
    24781 aacgttctct tgtttttcac cgtacatacg ctccagaccg tcatgcataa tgacagcaac
    24841 ttcgtaagcg taagccgggt cgtaagagat acagttcgga atagtcagcg actgaatgtg
    24901 gctgtgacca tcttcatgct gcagaccttc tccgttcagg gtggtacgac cggaagtacc
    24961 gccgatcagg aagccacgcg cttgctggtc gccagccgcc cagcacagat cgccaatacg
    25021 ctggaagccg aacatcgagt aatagatgta gaacgggatc atcggcagat tgttggtgct
    25081 gtaagaggtc gccgctgcca gccaggaaca acctgcgccc agctcgttga tcccttcctg
    25141 cagaatctga cctttctcgt cttctttata gtaagcaacc tgctcgcggt cctgcggggt
    25201 gtactgctga ccgttcgggc tgtaaatacc aatctgacgg aacagacctt ccataccgaa
    25261 agtacgcgct tcgtcggcga tgatcggtac cagacgatct ttgatcgact tgttcttcag
    25321 cattacgttc agggcacgaa cgaaagcgat agtggtagag atctctttgc tctgctcttc
    25381 cagcagcgcg ccgaagtctt gcaggctcgg cagctcaagc ttctcggtga agttcggctg
    25441 acggcttggc agataaccgt gcagtttctg acgctgtgcg tgcagatagg tatgctcttc
    25501 agaaccttcc gggaaggtga tgtacggcag tttttcgata tctgcatcag acaccggcac
    25561 attgaaacgg tcgcggatgt gacgcacgcc gtccatgttc attttcttaa cctggtgcgc
    25621 gatgttttta ccttcagccg cgtcgcccat gccgtaacct ttaatggaat gagcaaggat
    25681 tactgtcgct ttgcctttgg tttcctgcgc tttcttgaat gcagcgtaga ttttcttcgg
    25741 atcgtgacca ccacggttca gtgcccagat ctgctcgtca gtccagtctg caaccagtgc
    25801 tgcggtttca ggatatttac cgaagaagtg ttcacgaacg tacgcaccat ctttcgattt
    25861 gaaggtctgg tagtcgccgt caacggtttc gttcatcagc tggatcagtt taccgctggt
    25921 atctttacgc agcagttcat cccaacggct accccacatc actttgatca cgttccagcc
    25981 agcaccttcg aagatgcctt ccagttcgtt gatgatcttg ccgttaccgg tgaccgggcc
    26041 gtcaagacgc tgcaggttac agttgataac gaagaccagg ttatccagtt tttcacgggt
    26101 agcgatggtg atcgcacctt tggattccgg ttcgtccatt tcaccgtcgc cgaggaacgc
    26161 gtaaacggtc tgtttagagg tatctttcag gccacggtgt tccagatatt tcaggaattt
    26221 agcctggtaa atagcaccaa tcggccccag ccccatagat acggtcggga actgccagaa
    26281 ttccggcatc agtttcgggt gcggatagga agagaggcca ttgccgtgaa cttcctgacg
    26341 gaagttatcc agctgctcct gagtcagacg accttccagg aaagcacgag cgtacacgcc
    26401 cggggagatg tggccctgga agtaaaccag gtcgccgcca tcctgctcgt tgcgtgcacg
    26461 gaagaagtgg ttaaagcaca catcataaat ggttgcggaa gactggaagg acgccatatg
    26521 gccgcccagt tcgaggtctt ttttcgacgc acgcagcacc gtcatgatgg cgttccagcg
    26581 gatagctgaa cgaatacggc gttccagttc cagattaccc ggatactccg gttgttcttc
    26641 aacggggatg gtgttgatgt agttgctgat acctgtgcct gcggctacgt ttacaccgcc
    26701 tttgcgggct tcagcaagca gttggtcgat cagatactga gcacgctcaa caccttcttc
    26761 acggatgacc gattcgatcg cctggagcca gtcgcgagtt tcgatcggat ccacgtcatt
    26821 tgggaaacgt tctgacatgg gttattcctt atctatctaa taacgttgag ttttctggaa
    26881 cctgtcccat tgaactctcg ccggaaagct caataagaca ggttctacgt ttagttgccg
    26941 cgcttttata tgcgcttgat ttacaacatc ttctggataa tttttaccag taaaatcact
    27001 aattctttcg ttgctccaga cgacgcagag aacgctcacg gcggctctct tcacgacttc
    27061 tgtcgagcaa aatttcttcg ataaaggcca gatggcgatg cgatgcttcg cgcgcttctt
    27121 ccggcttacc ggccataatc gcttcaaata tgcgggtgcg gtgactactc accagcggca
    27181 gcatctcgcg acgcgaatag agcaattcga agttctggcg gacattctgg gccaacatcg
    27241 gctccataca ccttagcaga tgaagcagaa ccacattgtg ggccgcttca gtgacagcaa
    27301 tctgatactg gagtacggcg tttgattccg cgtccagatc gccagactgc tgcgccagtt
    27361 ctatggcgtg atggagttca cggatgcgtt ccttgtcttc atcggtacta cgcagcgcgg
    27421 cgtaataagc ggcgatacct tccagggcgt gtcgtgtttc gagcaagtca tactgtgact
    27481 caggatggtc ggagagcagc tccaccagcg gatcgctgaa gctttgccat aggctgctct
    27541 ggacaaaagt gccgccaccc tggcgacgaa gcaacaagcc cttcgcttcg agacgttgaa
    27601 tcgcctcacg caaggaggga cgggagacgt caaactgttt tgccagttcg cgttccggtg
    27661 ggagtttttc gcccgggcgg agagtgcctt cgaggatcaa aaactccagt tgctgctcaa
    27721 tcacatcgga gagttttggt tggcggattt tgctgtaggc catgagttcc tgtcttaagc
    27781 cacttgctga agtcaattgg tcttaccaat ttcatgtctg tgacgctaaa gtaacaaagt
    27841 attcacctta tgtccataca ggttttgatt gaaatcatga aactgtgcac attttaacaa
    27901 cttgacatat ataacgtttc aaagttgtaa ctatgcacaa atgtagactt tacgtaggaa
    27961 agggattttt taacgattat taaactataa aaatccgaat tgaaccgatt cacttaccaa
    28021 ttttgtgatt tttaattcaa ttaaaacgaa tttaaattca ttctacatat tgagaggggt
    28081 tgaggctgag ctttacaaac ggtttctttt taagcaactc atcttcaacc atgcataaag
    28141 cgggtgcatt cgctgccgca taccattatt cttgatctga cggaagtctt tttgtaacaa
    28201 ttcaaacttc tttgatgtaa acaaattaat acaacaaacg gaattgcaaa cttacacacg
    28261 catcactgcg tagatcaaaa aaacaaccac cgcacgaggt ttcatgatgg aaggtcaaca
    28321 gcacggcgag cagctaaaac gcggccttaa aaaccgccat attcagctta tcgcgctggg
    28381 tggcgcgata gggaccgggt tattcctggg tagcgcctcc gtaatacagt ccgcagggcc
    28441 agggattatc ctgggttacg ccattgctgg ttttatcgcc tttctgatca tgcgtcagct
    28501 gggtgaaatg gtggtcgaag aacctgtcgc aggctccttt agccactttg cttataaata
    28561 ctggggcagt tttgccggtt tcgcctctgg ctggaactac tgggtactgt acgttttagt
    28621 tgccatggct gagctgactg ccgtgggtaa atacattcag ttctggtatc cggaaatccc
    28681 cacctgggtt tctgccgccg tattctttgt ggtgattaac gccatcaacc tgaccaacgt
    28741 taaagtgttt ggcgagatgg agttctggtt tgccattatc aaagttatcg ctgtggtagc
    28801 gatgatcatc ttcggcggct ggctgctatt cagtggcaac agcggcccgc aggcgaccgt
    28861 tagcaacctg tgggatcagg gtggtttcct gccgcacggc ttcaccgggc tggtgatgat
    28921 gatggcaatt atcatgttct cgttcggtgg tctggaactg gtggggatca ccgcagcaga
    28981 agctgataac ccggagcaaa gtataccgaa agcaactaac caggttatct accgcatcct
    29041 gattttctat attggttcgt tagccgttct gctctcactg atgccgtgga cccgcgttac
    29101 cgccgatacc agtccgtttg tgctgatctt ccacgagtta ggcgatacct ttgtggcgaa
    29161 tgcgctgaac atcgtggtac tgactgcggc gctctccgtg tacaacagct gcgtatattg
    29221 caacagccgt atgctgtttg gtctggcaca acagggtaat gcgccaaaag cgctggcgtc
    29281 tgtcgataaa cgtggtgtac cagtaaatac cattctggtg tctgcactgg taacggcgtt
    29341 gtgcgtactg attaactacc ttgccccaga gtccgctttc ggactgttaa tggcgctggt
    29401 ggtatctgca ctggtaatca actgggcgat gattagcctg gcgcatatga aattccgtcg
    29461 cgccaagcag gaacaaggcg tggtaactcg cttccctgct ctgctttatc cgctgggtaa
    29521 ctggatctgc ctgctgttta tggcggcggt actggtgatt atgctgatga ccccaggaat
    29581 ggcgatttcg gtatacctga tcccggtatg gctgatcgtg ttaggtatcg gctatctgtt
    29641 taaagagaaa accgccaaag ccgtaaaagc gcattaatct ctctacgccc tcacccgtac
    29701 agggtgaggg caataatctt tacaccaacg ccccgtaaat cgtcagtagt gcaatcacca
    29761 ccacgaccac gaacgaggtt ttcttcgcca ttgaaaccgc tgccttcggc gtctccacct
    29821 tatcgacatg cggttcacgc gccagagaga actgcgccag acgcgttaac acctgatact
    29881 gcgaagtatg gaagtcaccc agcgaagcaa accaggccgg taacgctttc tccccatgac
    29941 cgatcaaggc atataccaca cccgcaagac gaaccggcac ccaatccagt acatgaagca
    30001 cggcatcaat gccggactgt aaacgatgat gcggcgtctg gtatcgcgcc agccagtatt
    30061 gccatgcacg caaaaacgca taccccatca gcgtaacggg tccccagatt ccccccacaa
    30121 tcaaccagaa cagcggagca agataaaaac gaaagttaat ccacagcaat gcattttgca
    30181 gctcacgcaa atactcacgt tcatcgcagc ctgccgggac gccgtgaatc atggtgagtt
    30241 cgccagccat cgtgacacgg gcatggctat cattacgtga agcagctgtc agataagcat
    30301 gataatgaag acgaacttta cctgcgccaa tacacagcaa accaatcagc agccacacca
    30361 gcagcgtggg aacgttgaac aatactccct gcaatgcgcg taacagtaaa aaagtcacgc
    30421 ccatcgcaat aatggtcatg cctaacgtgc gcccgagaga aaaatgtttc acccgccgaa
    30481 agaacgcttc aagacgatga tcaagctgcc agtgctcgcc caacttaaac aggcgctcga
    30541 aaattaacac cagtaaggtt gtaaatagcg tcatgttgtc tccttgctga ccagcgcacg
    30601 aaaccgcgcc caatcaaatg cagggccggg atcggttttc cgatccggcg caatatcaca
    30661 atggcccgtc atgttattag cgatatctgg atagcgatca atcagtgccc gcgtaaccgc
    30721 cgcaagctgt tgatactgcg catcggtata cgccagcgta tcggtgcctt caagctcaat
    30781 cccaatagaa aaatcattgc agcgttcgcg cccctgatac tgagagactc ccgcatgcca
    30841 tgcacgttta tcgaaaggaa catactggac tatttcacca tcacggcgaa tcaaacagtg
    30901 agcggagacg cgcaaatggg cgatctcagc aaagaaagga tgtgcctgcg gatcaatagt
    30961 tccagtgaat aatgcgtcga tccacggacc gccaaactcg cctggcggca ggctaatatt
    31021 gtgcaccacc agcagggtgg gtgtttcgtc atccgggcgg caatcgtaat gtggtgaggg
    31081 aacgcggcgc gcgccaacca gccacccctg ttctaacaac atgcaggatc tccttatatg
    31141 tggtgctaat acccggttca gagtagcatg tttctacctt atgattcgtt agctatctgg
    31201 agttttaaca tgccgcctcg ccgctataac cctgacaccc gacgtgacga gctgctggaa
    31261 cgcattaatc tcgatatccc cggcgcggtg gcccaggcgc tgcgggaaga tttaggcgga
    31321 acagtcgatg ccaacaatga cattacggca aaacttttac cggaaaactc tcgctctcat
    31381 gccacggtga tcacccgcga gaatggcgta ttttgcggca aacgctgggt tgaagaggtg
    31441 tttattcaac tggcaggcga cgatgtcacc ataatctggc atgtggatga cggcgatgtc
    31501 atcaacgcca atcaaccctt gttcgaactt gaaggcccat cccgcgtgct gttaacgggc
    31561 gaacgcactg cgcttaattt tgtgcaaacc ctttcaggag ttgccagtaa ggtacgccac
    31621 tatgtcgaat tactggaagg caccaacacg cagttgttgg atacgcgcaa aaccttacct
    31681 ggcctgcgtt cagctctgaa atacgcggta ctttgcggcg gcggagcgaa tcaccgtctg
    31741 gggctttctg atgccttcct gatcaaagaa aatcatatta ttgcctccgg ctcagtgcgc
    31801 caggccgtcg aaaaagcgtc ctggctgcac ccggatgcgc cagtagaagt cgaagtagag
    31861 aatctggaag aacttgatga agccctgaaa gcaggagccg atatcatcat gctggataac
    31921 ttcgaaacag aacagatgcg cgaagccgtc aaacgcacca acggcaaggc gctactggaa
    31981 gtgtctggca acgtcactga caaaacactg cgcgaatttg ccgaaacggg cgtggacttt
    32041 atctccgtcg gtgcgctaac taaacacgta caagcactcg acctttcaat gcgttttcgc
    32101 taattgctga cagatttatc cgctccatcg cgggcggata atctcccctt ccccaacttt
    32161 cttcgtaacg cctcgcaaat ttcttgtctt tcgctgcaac gaaataaaaa acctcggaag
    32221 ctgctttccc gtttcgtttt ttgcccctcg cttgtgctga tggcgtttgc caaagtagcg
    32281 ccaaccaaat caaggagcga aacagatgga caagcaacgc ggttttacac ttatcgaact
    32341 gatggtggtt attggcatca ttgccatttt aagcgccatt ggtattcccg cttatcaaaa
    32401 ctacctgcgc aaagctgcac tcaccgacat gctacaaacc tttgtgcctt accgtaccgc
    32461 cgtagagttg tgcgcgctgg aacatggtg
//
LOCUS       DAJVSY010000029        31374 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.029, whole genome shotgun sequence.
ACCESSION   DAJVSY010000029 DAJVSY010000000
VERSION     DAJVSY010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 31374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31374
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.029"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(18..3299)
                     /locus_tag="OQQ19_001228"
     CDS             complement(18..3299)
                     /locus_tag="OQQ19_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5107 domain-containing protein"
                     /protein_id="HCS1802922.1"
                     /translation="MTPVKVWQERVEIPTYETGPQDIHPMFLENRVYQGSSGAVYPYG
                     VTDTLSEQKTLKSWQAVWLENDYIKVMILPELGGRVHRAWDKVKQRDFVYHNEVIKPA
                     LVGLLGPWISGGIEFNWPQHHRPTTFMPVDFTLEAHEDGAQTVWVGETEPMHGLQVMT
                     GFTLRPDRAALEIASRVYNGNATPRHFLWWANPAVKGGEGHQSVFPPDVTAVFDHGKR
                     AVSAFPIATGTYYKVDYSAGVDISCYKNVPVTTSYMAEKSQYDFVGAWCHDEDGGLLH
                     VANHHIAPGKKQWSWGHSEFGQAWDKSLTDNNGPYIELMTGIFADNQPDFTWLDAYEE
                     KRFEQYFLPYHSLGMVQNASRDAVIKLQRSKRGIEWGLYAISPLNGYRLAIREIGKCN
                     ALLDDAVALMPATAIQGVLHGINPERLTIELSDADGNIVLSYQEHQPQELPLLDVAKA
                     PLAAQDITSTDEAWFIGQHLEQYHHASRSPFDYYLRGVALDPLDYRCNLALAMLEYNR
                     ADFPQAVAYATQALKRAHALNKNPQCGQASLIRASAYERQGQYQQAEEDFWRAVWSGN
                     SKAGGYYGLARLAARNGNFDAGLDFCQQSLRACPTNQEVLCLHNLLLVLSGRQDNARV
                     QREKLLRDYPLNATLWWLNWFDGRSESALAQWRGLCQGRDVNALMTAGQLINWGMPTL
                     AAEMLNALDCQRTLPLYLQASLLPKAERGELVAKAIDVFPQFVRFPNTLEEVAALESI
                     EECWFARHLLACFYYNKRSYNKAIAFWQRCVEMSPEFADGWRGLAIHAWNKQHDYELA
                     ARYLDNAYQLAPQDARLLFERDLLDKLSGATPEKRLARLENNLEIALKRDDMTAELLN
                     LWHLTGQADKAADILATRKFHPWEGGEGKVTSQFILNQLLRAWQHLDAREPQQASELL
                     HAALHYPENLSEGRLPGQTDNDIWFWQAICANAQGDETEAMRCLRLAATGDRTINIHS
                     YYNDQPVDYLFWQGMALRLLGEQQTAQQLFSEMKQWAQEMAKTSIEADFFAVSQPDLL
                     SLYGDLQQQHKEKCLMVAMLASAGLGEVAQYESARAELTAINPAWPKAALFTTVMPFI
                     FNYVH"
     gene            3417..4610
                     /locus_tag="OQQ19_001229"
     CDS             3417..4610
                     /locus_tag="OQQ19_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311443.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HCS1802923.1"
                     /translation="MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAV
                     SNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACL
                     SPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDRTINLALAIHGQVDPVTGVSQT
                     MPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIG
                     SSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLK
                     SQPVNTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWL
                     YGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA
                     QLRQI"
     gene            complement(4674..5927)
                     /gene="glyA"
                     /locus_tag="OQQ19_001230"
     CDS             complement(4674..5927)
                     /gene="glyA"
                     /locus_tag="OQQ19_001230"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HCS1802924.1"
                     /translation="MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVM
                     QAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQAN
                     FAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEK
                     QAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVP
                     HAHVVTTTTHKTLAGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVAL
                     KEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEAD
                     AALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS
                     INDEAVIERIKGKVLDICARYPVYA"
     gene            6255..7445
                     /gene="hmpA"
                     /locus_tag="OQQ19_001231"
     CDS             6255..7445
                     /gene="hmpA"
                     /locus_tag="OQQ19_001231"
                     /EC_number="1.14.12.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NO-inducible flavohemoprotein"
                     /protein_id="HCS1802925.1"
                     /translation="MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFN
                     MSNQRNGDQREALFNAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGEHL
                     LATLDEMFSPGQEVLDAWGKAYGVLANVFINREAEIYNENASKAGGWEGTRDFRIVAK
                     TPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYR
                     IAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISSGVGQTPMLA
                     MLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAK
                     GQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFMQFTAKQLVDLGVKQENIYYECFGP
                     HKVL"
     gene            complement(7490..7828)
                     /gene="glnB"
                     /locus_tag="OQQ19_001232"
     CDS             complement(7490..7828)
                     /gene="glnB"
                     /locus_tag="OQQ19_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017373484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulatory protein P-II"
                     /protein_id="HCS1802926.1"
                     /translation="MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTE
                     LYRGAEYMVDFLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRI
                     RTGEEDDAAI"
     gene            complement(7889..9223)
                     /gene="glrR"
                     /locus_tag="OQQ19_001233"
     CDS             complement(7889..9223)
                     /gene="glrR"
                     /locus_tag="OQQ19_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator GlrR"
                     /protein_id="HCS1802927.1"
                     /translation="MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRV
                     LNREKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFS
                     FLTKPVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSV
                     LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVS
                     NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISAT
                     HRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVR
                     AFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV
                     EARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE"
     gene            complement(9213..9926)
                     /gene="qseG"
                     /locus_tag="OQQ19_001234"
     CDS             complement(9213..9926)
                     /gene="qseG"
                     /locus_tag="OQQ19_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system QseEF-associated
                     lipoprotein QseG"
                     /protein_id="HCS1802928.1"
                     /translation="MRHIFQRLLPRRLWLAGLPCLALLGCVQNHNKPAIDTPAEEKIP
                     VYQLADYLSTECSDIWALQGKSTETNPLYWLRAMDCADRLMPAQSRQQARQYDDGCWQ
                     NTFKQGILLADAKITPYERRQLVARIEALSTEIPAQVRPLYQLWRDGQALQLQLAEER
                     QRYSKLQQSSDSELDTLRQQHHVLQQQLELTTRKLENLTDIERQLSTRKPAGNFSPDT
                     PHESEKPAPSTHEVTPDEP"
     gene            complement(10091..11518)
                     /gene="qseE"
                     /locus_tag="OQQ19_001235"
     CDS             complement(10091..11518)
                     /gene="qseE"
                     /locus_tag="OQQ19_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417051.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two component system sensor histidine kinase
                     QseE/GlrK"
                     /protein_id="HCS1802929.1"
                     /translation="MKRWPVFPRSLRQLVMLAFLLILLPLLVLAWQAWQSLNALSDQA
                     ALVNRTTLIDARRSEAMTNAALEMERSYRQYCVLDDPTLAKVYQSQRKRYSEMLDAHA
                     GVLPDDKLYQALRQDLNNLAQLQCNNSGPDAAAAARLEAFASANTEMVQATRTVVFSR
                     GQQLQREIAERGQYFGWQSLVLFLVSLVMVLLFTRMIIGPVKNIERMINRLGEGRSLG
                     NSVSFSGPSELRSVGQRILWLSERLSWLESQRHQFLRHLSHELKTPLASMREGTELLA
                     DQVVGPLTPEQKEVVSILDSSSRNLQKLIEQLLDYNRKQADSAVELENVELAPLVETV
                     VSAHSLPARAKMMHTDVDLKATACLAEPMLLMSVLDNLYSNAVHYGAESGNICLRSSS
                     HGARVYIDVINTGTPIPQEERAMIFEPFFQGSHQRKGAVKGSGLGLSIARDCIRRMQG
                     ELYLVDESGQDVCFRIELPSSKNTK"
     gene            complement(12076..15963)
                     /gene="purL"
                     /locus_tag="OQQ19_001236"
                     /gene_synonym="purI"
     CDS             complement(12076..15963)
                     /gene="purL"
                     /locus_tag="OQQ19_001236"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HCS1802930.1"
                     /translation="MMEILRGSPALSAFRINKLLARFQAARLPVHNIYAEYVHFADLN
                     APLNDDEHAQLERLLKYGPALASHAPQGKLLLVTPRPGTISPWSSKATDIAHNCGLQQ
                     VNRLERGVAYYIEAGTLTNEQWQQVTAELHDRMMETVFFDLDDAEQLFAHHQPTPVTS
                     VDLLGQGRQALIDANLRLGLALAEDEIDYLQDAFTKLGRNPNDIELYMFAQANSEHCR
                     HKIFNADWIIDGEQQPKSLFRMIKNTFETTPDHVLSAYKDNAAVMEGSEVGRYFADHE
                     TGRYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAGLVG
                     FSVSNLRILGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTY
                     EEKVNSHNGEELRGYHKPIMLAGGIGNIRADHVQKGEINVGAKLVVLGGPAMNIGLGG
                     GAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLGDANPILFIHDVGAGGL
                     SNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDEL
                     CKRERAPYAVIGEATEELHLSLHDRHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGD
                     ALVREGITIADAVKRILHLPTVAEKTFLVTIGDRSVTGMVARDQMVGPWQVPVANCAV
                     TTASLDSYYGEAMAIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANW
                     MAAAGHPGEDAGLYEAVKAVGEELCPALGLTIPVGKDSMSMKTRWQEGNEEREMTSPL
                     SLVISAFARVEDVRHTITPQLSTEDNALLLIDLGKGNNALGATALAQVYRQLGDKPAD
                     VRDVAQLKGFYDAIQALVAQRKLLAYHDRSDGGLLVTLAEMAFAGHCGINADIASLGD
                     DRLAALFNEELGAVIQVRAADREAVESVLAQHGLADCVHYVGQAVSGDRFVITANGQT
                     VFSESRTTLRVWWAETTWQMQRLRDNPECADQEHQAKSNDADPGLNVKLSFDINEDVA
                     APYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLTGRTGLEDFHAL
                     VACGGFSYGDVLGAGEGWAKSILFNDRVRDEFATFFHRPQTLALGVCNGCQMMSNLRE
                     LIPGSELWPRFVRNTSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVR
                     DAAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTESGRVTIMMPHPE
                     RVFRTVSNSWHPENWGEDGPWMRIFRNARKQLG"
     gene            16223..17779
                     /gene="mltF"
                     /locus_tag="OQQ19_001237"
     CDS             16223..17779
                     /gene="mltF"
                     /locus_tag="OQQ19_001237"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417053.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltF"
                     /protein_id="HCS1802931.1"
                     /translation="MKKLKINYLFIGILALLLAVALWPSIPWFGKADNRIAAIQARGE
                     LRVSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNA
                     DLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLCNLTAEQLTVAPGHVV
                     VNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELA
                     VALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVD
                     TRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLT
                     KNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHML
                     DARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQIS
                     LVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSSSNYLTHSPSLLF
                     SRKGSEEKQN"
     gene            complement(17776..18312)
                     /gene="tadA"
                     /locus_tag="OQQ19_001238"
     CDS             complement(17776..18312)
                     /gene="tadA"
                     /locus_tag="OQQ19_001238"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HCS1802932.1"
                     /translation="MRRAFITGVFFLSEVEFSHEYWMRHALTLAKRAWDEREVPVGAV
                     LVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCA
                     GAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFF
                     RMRRQEIKAQKKAQSSTD"
     gene            complement(18337..18972)
                     /gene="yfhb"
                     /locus_tag="OQQ19_001239"
     CDS             complement(18337..18972)
                     /gene="yfhb"
                     /locus_tag="OQQ19_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417055.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase C"
                     /protein_id="HCS1802933.1"
                     /translation="MATHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPL
                     LPIIAIALLIKGRAARWPMSLLLWGCTFGHSEARLQTLQADFVRWFRDNVTAFPLVQE
                     RLTTYLLSSDADIWLITGSPQPLVEAVYFDKPWLPRVNLIASQIQRGYGGWVLTMRCL
                     GHEKVAQLERKIGTPLRLYSGYSDSNQDNPLLYFCQHRWRVTPRGELQQLE"
     gene            19181..20029
                     /locus_tag="OQQ19_001240"
     CDS             19181..20029
                     /locus_tag="OQQ19_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417056.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HCS1802934.1"
                     /translation="MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEA
                     GVSQSSVVKFAQKLGYKGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKL
                     IKENTAAMYATLNVNSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFN
                     AAAVRDMHALLATVQASSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPN
                     ALQQRASHCLYTIAEEQATNSASISACHAQGMLTDLLFIALIQQDLELAPERIRHSEA
                     LVKKLV"
     gene            20085..20345
                     /gene="yfhL"
                     /locus_tag="OQQ19_001241"
     CDS             20085..20345
                     /gene="yfhL"
                     /locus_tag="OQQ19_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster ferredoxin YfhL"
                     /protein_id="HCS1802935.1"
                     /translation="MALLITKKCINCDMCEPECPNEAISMGDHIYEINSDKCTECVGH
                     YETPTCQKVCPIPNTIVKDPAHVETEEQLWDKFVLMHHADKI"
     gene            complement(20539..20619)
                     /gene="shoB"
                     /locus_tag="OQQ19_001242"
     CDS             complement(20539..20619)
                     /gene="shoB"
                     /locus_tag="OQQ19_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin ShoB"
                     /protein_id="HCS1802936.1"
                     /translation="MTDCRYLIKRVIKIIIAVLQLILLFL"
     gene            complement(21039..21419)
                     /locus_tag="OQQ19_001243"
     CDS             complement(21039..21419)
                     /locus_tag="OQQ19_001243"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HCS1802937.1"
                     /translation="MAILGLGTDIVEIARIEAVIARSGERLARRVLSDNEWAIWKTHH
                     QPVRFLAKRFAVKEAAAKAFGTGIRNGLAFNQFEVFNDELGKPRLRLWGEALKLAEKL
                     GVVNMHVTLADERHYACATVIIES"
     gene            complement(21419..22150)
                     /gene="pdxJ"
                     /locus_tag="OQQ19_001244"
     CDS             complement(21419..22150)
                     /gene="pdxJ"
                     /locus_tag="OQQ19_001244"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HCS1802938.1"
                     /translation="MAELLLGVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITV
                     HLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVT
                     TEGGLDVAGQREKMRDACKRLTDAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTGCYA
                     DAKTDAEQAQELVRIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAI
                     IGRAVMTGLKDAVAEMKRLMLEARG"
     gene            complement(22162..22890)
                     /gene="recO"
                     /locus_tag="OQQ19_001245"
     CDS             complement(22162..22890)
                     /gene="recO"
                     /locus_tag="OQQ19_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HCS1802939.1"
                     /translation="MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRS
                     TLKGALQPFTPLLLRFGGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEY
                     ETRFSELFFDYLHCIQSLAGATGTPEPALRRFELALLGHLGYGVNFTYCAGSGEPVDD
                     TMTYRYREEKGFIASVVIDNKTFTGRQLKALNAREFPDADTLRAAKRFTRMALKPYLG
                     GKPLKSRELFRQFMPKRTVKTHYE"
     gene            complement(22902..23807)
                     /gene="era"
                     /locus_tag="OQQ19_001246"
     CDS             complement(22902..23807)
                     /gene="era"
                     /locus_tag="OQQ19_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HCS1802940.1"
                     /translation="MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR
                     HRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT
                     PDDEMVLNKLRDGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL
                     NVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEI
                     ERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLE
                     LWVKVKSGWADDERALRSLGYVDDL"
     gene            complement(23804..24484)
                     /gene="rnc"
                     /locus_tag="OQQ19_001247"
     CDS             complement(23804..24484)
                     /gene="rnc"
                     /locus_tag="OQQ19_001247"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004248457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HCS1802941.1"
                     /translation="MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLG
                     DSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELK
                     SGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRL
                     QEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQ
                     ALKKLELE"
     gene            complement(24757..25731)
                     /gene="lepB"
                     /locus_tag="OQQ19_001248"
     CDS             complement(24757..25731)
                     /gene="lepB"
                     /locus_tag="OQQ19_001248"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HCS1802942.1"
                     /translation="MANMFALILVIATLVTGILWCVDKFFFAPKRRERQAAAQAAAGD
                     SLDKATLKKVAPKPGWLETGASVFPVLAIVLIVRSFIYEPFQIPSGSMMPTLLIGDFI
                     LVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDP
                     VSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETK
                     ENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNR
                     DNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGVRLSRIGGIH"
     gene            complement(25747..27546)
                     /gene="lepA"
                     /locus_tag="OQQ19_001249"
     CDS             complement(25747..27546)
                     /gene="lepA"
                     /locus_tag="OQQ19_001249"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HCS1802943.1"
                     /translation="MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSM
                     DLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV
                     DAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR
                     CSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLR
                     KGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTL
                     ARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEPESSSAL
                     GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDSPSKLPA
                     VNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEV
                     VLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQNRG
                     RELVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVKQLRKNVLAKCYGGDISRKKKLLQ
                     KQKEGKKRMKQIGNVELPQEAFLAILHVGKDNK"
     gene            complement(27744..28223)
                     /gene="rseC"
                     /locus_tag="OQQ19_001250"
     CDS             complement(27744..28223)
                     /gene="rseC"
                     /locus_tag="OQQ19_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SoxR-reducing system protein RseC"
                     /protein_id="HCS1802944.1"
                     /translation="MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLG
                     PQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS
                     DVAALCGAVLGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ"
     gene            complement(28220..29176)
                     /gene="rseB"
                     /locus_tag="OQQ19_001251"
     CDS             complement(28220..29176)
                     /gene="rseB"
                     /locus_tag="OQQ19_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-E factor regulatory protein RseB"
                     /protein_id="HCS1802945.1"
                     /translation="MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYE
                     LSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGDEISYFEPGLEPFTL
                     NGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWM
                     DTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA
                     KFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQM
                     LRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGAAQ"
     gene            complement(29176..29826)
                     /gene="rseA"
                     /locus_tag="OQQ19_001252"
     CDS             complement(29176..29826)
                     /gene="rseA"
                     /locus_tag="OQQ19_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma-E factor RseA"
                     /protein_id="HCS1802946.1"
                     /translation="MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMR
                     GDTPEVLHFDISSRVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLT
                     QMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANN
                     GQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ"
     gene            complement(29859..30434)
                     /gene="rpoE"
                     /locus_tag="OQQ19_001253"
     CDS             complement(29859..30434)
                     /gene="rpoE"
                     /locus_tag="OQQ19_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005070454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HCS1802947.1"
                     /translation="MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG
                     DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE
                     AENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIA
                     AIMDCPVGTVRSRIFRAREAIDNKVQPLIRR"
     gene            complement(30431..30586)
                     /gene="rseD"
                     /locus_tag="OQQ19_001254"
     CDS             complement(30431..30586)
                     /gene="rseD"
                     /locus_tag="OQQ19_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rpoE leader peptide RseD"
                     /protein_id="HCS1802948.1"
                     /translation="MIRLQHDKQKQMRYGTLQKRDTLTLCLLKLQLMEWRFDSAWKFG
                     LGRLYLG"
     gene            30842..>31374
                     /locus_tag="OQQ19_001255"
     CDS             30842..>31374
                     /locus_tag="OQQ19_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HCS1802949.1"
                     /translation="MNTLPEHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEG
                     STFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGV
                     LFDTHVQPNGEESYHLTREGGHSHRRILHAADATGREVQSTLVSKAQNHPNIRVLERS
                     NAVDLIVSDKIGLPGTRR"
BASE COUNT         7503 a         8402 c         7918 g         7551 t
ORIGIN      
        1 attacagtta atagggttta gtgaacgtag ttaaaaataa aaggcatcac agtggtgaat
       61 aatgccgctt tcggccaggc cggattaatc gccgtcaatt cagcgcgagc agactcatat
      121 tgcgcaacct ccccgagtcc cgcggacgcc agcatcgcca ccatcaggca tttttcttta
      181 tgctgctgtt gtaaatcgcc atacagcgat aacaggtcag gttgtgaaac agcaaagaaa
      241 tccgcctcaa tactggtttt cgccatctct tgcgcccact gtttcatttc actaaacagt
      301 tgctgtgcgg tttgctgttc acccagcagt cgcagcgcca ttccttgcca gaagagataa
      361 tcaaccggct gatcgttgta ataactgtgg atgttaatgg tgcgatcgcc ggtcgccgcc
      421 agacgtaaac aacgcatcgc ttcagtttca tcgccctgcg cgttggcgca tatcgcctgc
      481 cagaaccaga tgtcgttatc agtttgcccc ggtaaacggc cttcgcttaa attctccgga
      541 taatgcagcg cggcatgaag cagttcgctg gcctgctgcg gctctctggc atcaagatgc
      601 tgccaggcgc gtaataactg gttgaggata aactgactgg tgaccttccc ttccccgcct
      661 tcccacgggt ggaatttacg cgtggcgaga atgtccgccg ctttgtctgc ctgacccgtg
      721 agatgccaca aattgagcag ttctgcggtc atgtcgtcgc gtttcagcgc aatttccaga
      781 ttattttcca gacgcgccag tcgtttctcc ggtgtggctc cacttaactt atcaagcaaa
      841 tcccgttcga aaagcagacg tgcatcctgc ggcgcaagct gataagcatt atcaagataa
      901 cgcgcggcca gctcataatc gtgttgctta ttccacgcat ggatcgctaa cccgcgccag
      961 ccgtcggcaa actccggcga catctctacg caacgttgcc aaaaggcaat ggctttgttg
     1021 tagctacgtt tgttgtagta gaagcaggcc agtaaatggc gagcaaacca gcactcttca
     1081 atactctcca gcgccgccac ttcttccagc gtattcggga aacggacaaa ctgcgggaag
     1141 acatcaatgg cttttgcgac cagttcgcca cgttcggctt tcggcagcaa gctggcttgc
     1201 aggtaaagcg gcagcgtgcg ctggcagtcc agtgcgttca gcatctctgc cgccagggtg
     1261 ggcattcccc agttaatcag ttgcccggcg gtcatcaggg cgttaacgtc gcgtccctga
     1321 cacagaccgc gccactgcgc gagagctgat tcgctacgac catcgaacca gttcagccac
     1381 cacagagtgg cgttcagcgg ataatcgcgc agcagtttct cgcgctgcac acgcgcgttg
     1441 tcctgacgac cacttaacac cagcagcaga ttatgcaggc aaagcacttc ctgattggtt
     1501 gggcaggcgc gaagactttg ttggcaaaaa tccagaccag cgtcgaagtt accattacgc
     1561 gccgccagtc gtgccaggcc ataatagcca ccggctttgc tgttgccgct ccagaccgca
     1621 cgccagaaat cctcttcggc ttgttgatat tgtccctgac gttcgtaagc actggcgcga
     1681 atcaaactcg cctgtccgca ctgcggattt ttgttcagcg catgtgcgcg tttcagagcc
     1741 tgagtggcat acgccaccgc ttgcgggaaa tcggcgcggt tatattccag catcgccagc
     1801 gccaggttac agcggtaatc cagcggatcc agcgccacgc cgcgcaggta gtaatcgaac
     1861 ggtgaacggc tggcgtgatg atattgctcc agatgctgac cgataaacca ggcttcatct
     1921 gtactggtaa tgtcttgtgc tgccagtggc gctttggcga cgtccagcaa cggcaactct
     1981 tgcggctgat gttcctgata actcagtaca atattgccgt cggcatcgga gagctcaatg
     2041 gtcagccttt caggattgat accgtgcaac acgccctgga tggcggtcgc aggcatcagt
     2101 gccacggcat catcaagtaa cgcgttgcat ttgccgattt cgcggatcgc caggcggtat
     2161 ccgttcaacg gagagatggc atacagcccc cactcaatcc cccgcttact acgctggagt
     2221 tttatcaccg catcgcggga ggcattttgc accatgccca aagaatgata aggcaggaaa
     2281 tactgctcaa aacgcttctc ttcgtaagca tcaagccagg taaaatcggg ctggttatcg
     2341 gcaaaaatac cggtcatcag ttcgatatac gggccgttat tgtcggtcag actcttatcc
     2401 cacgcctggc caaattcact gtgtccccaa ctccactgtt ttttacctgg cgcaatatgg
     2461 tggttggcaa cgtgcagcaa accgccatct tcatcgtgac accacgcgcc gacaaaatcg
     2521 tactgcgatt tttcggccat atatgaggtt gtaacaggca catttttata gcaagaaatg
     2581 tccactccgg cggagtagtc cactttgtag taagtgccgg tggcgatggg gaaagcggag
     2641 acggcccgtt tgccgtgatc aaacaccgca gtcacatccg gtgggaaaac gctctgatgc
     2701 ccttcccccc ctttcactgc cgggttggcc caccacaaga aatgacgcgg cgtggcgtta
     2761 ccgttataga cgcggctggc gatttccagc gccgcccggt cagggcgcag ggtgaaacct
     2821 gtcatcacct gtaaaccatg catcggctcc gtttcgccta cccacaccgt ctgtgcaccg
     2881 tcttcatggg cttcgagggt gaaatcaacg ggcataaagg tggtcgggcg atgatgttgc
     2941 ggccagttaa actcaatccc accggaaatc cacggcccca gcagccccac cagcgcaggt
     3001 ttaatgactt cattgtgata aacaaaatcg cgctgtttca ctttatccca cgcgcgatgc
     3061 acccgaccgc ccagttccgg caggatcatc actttgatgt agtcgttttc cagccacacc
     3121 gcctgccagg atttcagggt tttctgctcg ctcagcgtat cggtcacgcc gtagggataa
     3181 accgcgccgg acgatccctg ataaacgcga ttttccagga acatgggatg tatatcctgc
     3241 ggcccggttt cataggtcgg gatctcaacg cgctcttgcc acacttttac tggagtcatg
     3301 gtgccctcaa tattaacaag acatactgaa ttaaaagatt tgtggcagtg tattgaacaa
     3361 tctggcaatg ttttcgcgga ataatcacgc aattaactaa acaaggttta gtgaagatga
     3421 gagcctgcat taacaatcaa cagattcgcc accataacaa atgcgtgatt ctggaactgc
     3481 tgtaccggca aaagcgcgcc aataaatcaa cgctggcccg gctggcgcaa atttcgattc
     3541 cggcagtcag taatattttg caggaactgg aaagcgaaaa acgggtggtg aatattgacg
     3601 atgaaagcca gacgcgcggg catagtagcg gtacatggct gattgcgccg gaaggtgact
     3661 ggacgctgtg cctgaacgtg acgcccacca gtattgagtg tcaggttgct aatgcttgtt
     3721 taagtccgaa aggtgaattt gagtatttac agattgatgc accgacgccg caggcgctgc
     3781 tgtccgaaat cgaaaaatgc tggcatcgcc accgtaaatt gtggccggac cgcaccatca
     3841 atctggcgct ggcaatccac ggtcaggttg atccggtgac cggcgtgtcg caaaccatgc
     3901 cgcaagcgcc gtggacaacg ccggttgagg tgaagtatct gctggaagag aagctgggca
     3961 ttcgggtgat ggtcgataat gactgcgtga tgctggcgct ggcggagaaa tggcaaaata
     4021 attcgcagga acgggatttc tgcgtgatca acgttgatta cggcattggc tcgtcgttcg
     4081 tgattaacga gcaaatttat cgcggcagtt tgtatggtag cggacaaatt ggtcacacca
     4141 tcgttaatcc ggatggcgtc gtctgcgact gtggacgtta cggctgcctg gaaaccgtcg
     4201 cctcgttaag tgcattaaaa aaacaggcgc gggtatggct aaaatcacaa ccggttaata
     4261 ctcagcttga tcctgaaaaa ctgacaaccg cgcagttaat cgctgcctgg cagagtggag
     4321 aaccgtggat caccagctgg gttgatcgct ctgccaatgc cattggtttg agtctgtata
     4381 acttcctcaa catcctcaat attaatcaga tttggttgta cggtcgcagt tgtgcctttg
     4441 gtgagaactg gcttaatact attattcgcc agacaggatt taacccgttc gaccgcgacg
     4501 aaggaccgag cgtgaaagcg acgcaaattg gcttcgggca attaagccgc gcacaacagg
     4561 tgctgggaat tggctatttg tatgttgagg cgcagttacg acagatttga tggcgcgata
     4621 acgtagaaag gcttcccgaa ggaagccttt tttcaacaga ttaaccgttt cgcttatgcg
     4681 taaaccgggt aacgtgcgca gatgtcgaga actttacctt tgatgcgctc gataacggct
     4741 tcatcattga tgctgtccag cacgtcacac atccagccag ccagttcttt cgcttctgct
     4801 tctttgaagc cgcgacgcgt aattgccgga gtacccacgc gaataccgga ggtcacaaac
     4861 gggctcttcg gatcgttcgg tacgctgttt ttgttgacgg tgatgttagc acggcccaga
     4921 gcggcgtctg cttctttacc ggtcaggttt ttatcaacca gatcaaccag gaacaggtgg
     4981 ttatcagtgc cgccggaaac cactttgtag ccgcgctcga ggaacacttc taccatcgct
     5041 ttagcgtttt tcgcgacctg ctgctggtaa gttttgaact caggctccat cgcttctttc
     5101 agagcaaccg ctttaccggc gattacgtgc atcaacggac cgccctgacc accagggaaa
     5161 acggcagagt tcagtttttt gtacagctct tcgctaccac ctttcgccag gatcaggccg
     5221 ccgcgcggac ccgccagggt tttgtgagtg gtggtagtaa caacgtgagc atgaggaacc
     5281 gggttcgggt agacgccagc agcaaccagg cccgcaacgt gcgccatatc aacgaacagg
     5341 taagcaccga tgctgtcagc gatttcacgc attttcgccc agtccaccac gccggaatat
     5401 gcagagaaac caccgataat cattttcggc ttgtgttctt tggcttgttt ttccagatcg
     5461 gcgtagtcga tatgaccggt agcatcgata ccgtaaggaa cgatgttgta cagtttaccg
     5521 gagaagttaa ccggagaacc gtgagtcagg tgaccgccat gcgccaggtt catacccaga
     5581 acggtatcac ctggttccag cagcgcggtg tagaccgcaa agttagcctg ggagccggag
     5641 tgcggctgga cgttagcgta gtcagcgccg aacagttctt tcgcacgatc gatcgccagt
     5701 tgttcaacga tatcaacata ctcgcaaccg ccgtagtagc gtttgcccgg ataaccttca
     5761 gcatatttgt tggtcagctg agaaccctgc gcctgcatta cgcgcgggct ggtgtagttt
     5821 tcggaggcga tcagttcgat gtgctcttcc tgacgtactt tttcctgctc catagcctgc
     5881 cacagttcgg catcataatc ggcaatgttc atttcacgct ttaacatccg catctcctga
     5941 ctcagctaac aataaaattt ttggccttta taggcggtcc tgttggacaa cggcgaacag
     6001 tataaccgaa tcattgtgcg ataacaggtc ttgacaaagg aatttacgca aacgattacc
     6061 ttcaggctac gcaaggcttt ggagaataaa gagcttgcaa ccggaaacgg atttcttttc
     6121 aggtttgtga tgcaaatttt tcacttcatc acattctttc tgaaaaacac caaagaacca
     6181 tttacattgc agggctattt tttataagat gcatttgaaa tacatcaatt aagatgcaaa
     6241 aaaaggaaga ccatatgctt gacgctcaaa ccatcgctac agtaaaagcc accatccctt
     6301 tactggtgga aacggggcca aagttaaccg cccatttcta cgaccgtatg tttactcata
     6361 acccagaact caaagaaatt tttaacatga gtaaccagcg taatggcgat caacgtgaag
     6421 ccctgtttaa cgctattgcc gcctacgcca gtaatattga aaacctgcct gcgctgctgc
     6481 cagcggtaga aaaaatcgcg cagaagcaca ccagcttcca gatcaaaccg gaacagtaca
     6541 acatcgtcgg tgaacacctg ttggcaacgc tggacgaaat gttcagcccg gggcaggaag
     6601 tgctggacgc gtggggtaaa gcctatggtg tactggctaa tgtatttatc aatcgcgagg
     6661 cggaaatcta taacgaaaac gccagcaaag ccggtggttg ggaaggtact cgcgatttcc
     6721 gcattgtggc taaaacaccg cgcagcgcgc ttatcaccag cttcgaactg gagccggtcg
     6781 acggtggcgc agtggcagaa taccgtccgg ggcaatatct cggcgtctgg ctgaagccgg
     6841 aaggtttccc gcatcaggaa attcgtcagt actctttgac tcgcaaaccg gatggcaaag
     6901 gctatcgtat tgcggtgaaa cgcgaagagg gtgggcaggt atccaactgg ttgcacaatc
     6961 acgccaatgt tggcgatgtc gtgaaactgg tcgctccggc aggtgatttc tttatggctg
     7021 tcgcagatga cacaccagtg acgttaatct cttccggtgt tggtcaaacg ccaatgctgg
     7081 caatgctcga cacgctggca aaagcaggcc acacagcaca agtgaactgg ttccatgcgg
     7141 cagaaaatgg cgatgttcac gcctttgccg atgaagttaa ggaactgggg cagtcactgc
     7201 cgcgctttac cgcgcacacc tggtatcgtc agccgagcga agccgatcgc gctaaaggtc
     7261 agtttgatag cgaaggtctg atggatttga gcaaactgga aggtgcgttc agcgatccga
     7321 caatgcagtt ctatctctgc ggcccggttg gcttcatgca gtttaccgcg aaacagttag
     7381 tggatctggg cgtgaagcag gaaaacattt attacgaatg ctttggcccg cataaggtgc
     7441 tgtaatttga tgttgccgga tggaaacatc cggcaaccct tgacgcggtt taaattgccg
     7501 cgtcgtcctc ttcaccggta cggatgcgaa tgacccgtgc cacgtcaaag acgaagattt
     7561 taccgtcacc gattttgccg gtttgcgccg tgcgaataat ggtatcgaca caggtatcga
     7621 caatgtcgtc cggtacgaca atctcaattt tcactttcgg cagaaaatcc accatatact
     7681 ccgcgccgcg gtacagctcg gtatggcctt tctggcgacc aaagcctttc acttcggtca
     7741 ccgtcatgcc ggtaataccg acttcggcca gtgcttcgcg gacatcgtcc agcttgaagg
     7801 gttttataat cgcatcaatc tttttcatgc tattccttga aaaggtcgcc tgtcttttga
     7861 tctgctaaac gtaacacata acgccaattc attccttgaa atcgtttgca tccagctcgt
     7921 gtcgggaaag cagtttataa aattctgtcc ggttgcgccc cgccattctc gccgcgtggg
     7981 tgacgttgcc tttggtaatt tgcagcagct tacgcaaata gttgagttca aactgattac
     8041 gtgcctcaac aaaggttggc agcgccgtgt tttcaccctc cagcgcctgc tctactaatg
     8101 catcgctaat aaccggagat gaggtcagcg ccacgcactg ttcaatcacg ttgaccaact
     8161 ggcgcacatt acccggccag ctagcggtca tcaggcgttt catcgcatca gtggagaacg
     8221 cgcggacaaa cggtttatgt cgctctgccg cctggcgcaa caggtgattt gccagaagcg
     8281 gaatgtcttc tgtgcgctct gccagagccg gaattttcag gctgacaacg ttgaggcggt
     8341 aatagagatc ttcgcggaat tccccgcgcg ccatcgcttt tggcagatca cggtgagtgg
     8401 cagaaataat ccgcacattg atatcaatat cgcggttact gcccagcggg cgcactttac
     8461 gctcctgcaa cacgcgcagc agtttgacct gtaacggcgc aggcatatcg ccaatttcat
     8521 cgagaaatag cgttccgcct tccgccgcct ggaataaacc ttcgcgattg ctgacagcgc
     8581 cagtaaacgc gccacgcgca tgaccaaaca gctccgactc cagcaattgc tcgggcaatg
     8641 cgccacagtt aatagcaata aatggtttgc tgttgcgcgg gctggcgttg tggatagcct
     8701 gggcgaaaat ctctttcccg gtgccgctct gaccgttaat caaaacgctg acgtctgatt
     8761 gcgccaccag ccgcgcctgt tccagcaaac gcagcatcag cgggctgcgg gtgacaattg
     8821 cctcgcgcca gcgttcatcg gtggctggcg cggattgctc cagcgcatcg tcaattgcct
     8881 gatatagcgc gtctttgtcg acaggcttgg tgaggaaact aaaaacgccc tgctgtgttg
     8941 cagcaacggc atcggggata gaaccatgcg cagtaagaat aattactggc attcccggct
     9001 gcactttctg gatttcagca aatagctgca taccgtccat ttcatccatc cgcaggtcgc
     9061 tgataactaa atctactttt tcgcgattca gtacccgtaa tccttcagcg ccactttccg
     9121 ccgtgaccac actgtagcct tcgctggtca ggcgcaggcc aagcagtttc agcaatcccg
     9181 gatcgtcatc gaccaataat aaatgcgcag gtttatggct catcaggagt gacctcatgg
     9241 gtggatggcg cgggcttttc actctcgtgc ggcgtatccg gcgagaaatt tccagccggt
     9301 ttgcgggtcg agagctggcg ttcaatatcg gtcaggtttt ccagcttgcg ggtggtgagt
     9361 tccagttgct gctgtagaac gtgatgttgc tggcgcaatg tatccagctc gctgtcgctg
     9421 gactgctgga gtttactgta acgttggcgc tcttccgcca gttgcagttg cagcgcctga
     9481 ccgtcgcgcc agagttgata cagtgggcga acctgtgccg ggatctcggt acttaacgct
     9541 tcaatacgcg cgaccagctg gcggcgctca tacggcgtaa ttttggcgtc ggcgagcaaa
     9601 atcccttgtt taaaggtatt ttgccagcag ccgtcgtcat attggcgagc ttgctgacgc
     9661 gactgcgcag gcattaaacg atcagcacaa tccatcgccc gcagccagta aagcggattg
     9721 gtttcggttg atttaccttg cagcgcccag atgtcgctac attcagtaga aagatagtca
     9781 gccagttgat aaaccggaat tttttcttct gctggcgtat caatggctgg cttattgtga
     9841 ttctgcacgc aacccagcaa tgccagacat ggcagccctg ccagccacag ccgtcggggc
     9901 aataatcgtt gaaaaatgtg tcgcatattc accagactta aagcctatcc cagtgggcgt
     9961 aattgttgca gacagtctgg acatggacag cgcggagaaa ccggagcgta catatcgtac
    10021 gtgaagattt cgagcactgc ccggagccga actgacaaat aaaatagcct gataggatag
    10081 gctgttagca ttatttcgtg tttttcgacg acggtaattc aatgcggaaa caaacgtctt
    10141 gcccgctctc gtcgaccaga tacagttccc cttgcatacg gcgaatacaa tccctggcaa
    10201 tgcttaatcc cagaccgctg cccttcaccg ccccttttcg ctggtggctt ccctgaaaaa
    10261 agggttcgaa gatcatggcg cgttcctctt gcggaatggg cgtgcctgta ttgatgacat
    10321 caatataaac ccgcgcacca tgtgaactgc tgcgaaggca aatgttaccg gattcagccc
    10381 cgtagtgcac cgcattggag taaagattat ccagtacgct catcagcagc attggctccg
    10441 ccaggcaagc tgttgctttg agatcgacgt cggtatgcat cattttagcc cgtgcgggca
    10501 ggctatgagc agaaaccact gtctccacca gcggtgctaa ttcaacattc tccagttcca
    10561 ccgcactgtc cgcctgttta cggttgtaat caagcagttg ttcgatcagt ttttgcaaat
    10621 tgcggctgct gctatcaaga atgctcacca cctctttttg ctctggcgta agcggcccga
    10681 caacctggtc agccagtaat tcagtgccct cgcgcatact cgccagtggc gtttttaatt
    10741 catgagataa atgtcttaaa aattgatggc gttgggattc cagccatgac aggcgctcac
    10801 ttaaccaaag aatacgttgc ccaaccgagc gtaactcgct cggtccactg aacgaaacgc
    10861 tattgcccag agaacgccct tcccccagac ggttgatcat gcgctcgata tttttcaccg
    10921 gcccgataat catccgcgtg aaaagtagca ccatcaccag actcaccaga aatagcacca
    10981 gcgattgcca accaaaatat tgcccacgtt cggcgatttc acgctgaagt tgctgcccac
    11041 gagagaacac cactgtgcgc gtggcctgca ccatttcggt attggcactg gcaaaggctt
    11101 caagacgcgc ggcggcggca gcatcgggac cactgttgtt acactgaagt tgggccagat
    11161 tgttcaaatc ctgacgcaat gcctggtaaa gtttatcgtc tggcagtacg cctgcgtggg
    11221 catcgagcat ttcgctgtaa cgcttgcgct ggctttgata aaccttcgca agcgtagggt
    11281 cgtccagcac gcaatactga cggtagctac gctccatctc cagcgccgcg ttggtcatcg
    11341 cttcactacg ccgggcatca ataagcgtag tgcggttaac cagcgccgcc tgatcgctaa
    11401 gcgcattcag gctttgccag gcttgccatg ccagcaccaa caggggtagt agaattagca
    11461 aaaatgccag cattaccagt tgtcgtaatg agcggggaaa aacgggccag cgtttcaagg
    11521 tgttactctc gtcagacgcg aatagcctga tgctaaccga ggggaagttc agatacaaca
    11581 aagccgggaa ttacccggct ttgttatgga ataaggcggt gcctaactcg acgtttcgcc
    11641 cgatggttga tatagctacg ctgatatcag aagttggacg gcaggcacct tgttgtgcgt
    11701 cattcgaatt ttatgtagca cgtcccgaag gggctgacat aagtcggtga atgagccact
    11761 gcttactatt atgcagtaac tgtgccaata aagaaaatag tttggtaacg tactgattat
    11821 acgttgcttt gagggattta tggcttcttc gctatttgaa tgtaaatcag ccactgtgtc
    11881 gctaaaaaga gacagcttaa gataaactta ttagattaca ataaaatcaa tcacttaagt
    11941 gtcgccagaa agcgacacgg taaaccaccc attgtcgtga tttacagaca caaaaaagct
    12001 cccggagttg ggagcttatg atagtggttg gtgcttaatg ccgcatccgg gctgcaaaac
    12061 caatgaactg atgaattacc ccaactgctt acgcgcattg cggaaaatgc gcatccatgg
    12121 gccatcctcg ccccagtttt ccggatgcca ggagttgctg acagtacgga aaacacgttc
    12181 cgggtgcggc atcataatgg tgactcgacc actttcagtc gtgactgccg taataccgtt
    12241 cggtgaaccg ttcgggttag ccgggtaggt ttcagtgact ttgccgaagt tatcgacata
    12301 gcgcagtgcc accagccctt tgctttccag tgccgccaga tgcgccgcat cacgcacttc
    12361 cacgcgccct tcaccatgag agacagcaat cggcatttgc gagcccacca tcccctgcaa
    12421 caacagagac gggctttggg ttacttcaac caggctgaaa cgcgcttcaa agcgatcgga
    12481 ggtattgcgc acaaaacgtg gccacaactc actacctggg atcagttcgc gcaggttaga
    12541 catcatctgg caaccgttac atacccccag cgccagcgtt tgcggacggt ggaagaaggt
    12601 tgcaaactca tcgcgtacac ggtcattgaa caggattgac ttcgcccaac cttcaccggc
    12661 acccagcaca tcaccgtagg agaaaccacc gcacgcgacc agggcgtgga aatcttccag
    12721 gcccgtgcgt ccggtcagca ggtcactcat atgcacgtcg atagcatcaa agcctgcacg
    12781 gtggaaagct gccgccattt caacatgcga gttcacgccc tgctcacgca gtacggcaac
    12841 tttcggacgt gcgccagtgg caatatacgg tgctgccaca tcttcgttga tatcgaacga
    12901 cagttttaca ttcaggcccg gatcggcgtc gttagatttc gcctgatgct cctgatcggc
    12961 acactccggg ttgtcacgca ggcgctgcat ctgccaggta gtttctgccc accagacacg
    13021 caacgtggtg cggctttcgc tgaatacagt ctgcccgttg gcggtaatca caaaacggtc
    13081 accggaaacc gcctgcccta cataatggac acaatcagca agcccatgct gtgccagtac
    13141 ggactcgacc gcttcacggt cagcggcacg aacctgaatc accgcaccca gttcttcgtt
    13201 aaacaacgcc gccaggcgat cgtcgcccag agaggcaata tccgcgttaa tgccgcaatg
    13261 accagcaaag gccatttccg ccagcgttac cagcaggccg ccatcagagc ggtcgtggta
    13321 tgcgagcagc ttacgctgtg caaccagcgc ctgaatcgcg tcatagaagc ctttcagttg
    13381 cgcgacgtcg cgtacatctg ccggtttgtc gccaagctga cgataaacct gcgccagcgc
    13441 cgttgcgccc agcgcgttat tgcctttgcc caaatcaatc agcaatagtg cgttatcttc
    13501 ggtagaaagc tgtggcgtga tggtgtgacg cacatcttcc acgcgggcaa atgcagaaat
    13561 caccagcgac agcggcgacg tcatttcgcg ctcttcgtta ccttcctgcc agcgggtttt
    13621 catcgacata gagtctttac ccaccgggat cgtcaggccc agcgccggac aaagctcttc
    13681 gcccacggct ttaacggctt catacaggcc cgcatcttca ccagggtggc ctgccgccgc
    13741 catccagttg gcggaaagtt taatgcgttt gatatcgcca atctgtgttg cggcaatatt
    13801 ggttaacgct tcaccgaccg ccagacgggc agaggcggcg aaatccagca gcgcaaccgg
    13861 cgcacgctcg ccaatcgcca tcgcttcacc gtagtagctg tcgaggctgg cggtagtgac
    13921 cgcgcagtta gcgaccggca cctgccacgg acccaccatc tgatcgcgcg ctaccatgcc
    13981 agttacgctg cggtcaccga tggtcaccag gaaagttttc tccgccacgg tcggcagatg
    14041 cagtatgcgt ttcaccgcgt ctgcaatggt gatcccttca cggaccagcg catcgccctt
    14101 cgctttcagc gtttgtacat cgcgggtcat cttcggcgtt ttaccaagca ggacgtccag
    14161 cggcagatcg atcggctgat tatcaaaatg acgatcgtgt agagaaagat gcagttcttc
    14221 ggtcgcttca ccaatcaccg cgtagggtgc gcgctcacgc ttacacagtt cgtcaaacag
    14281 cggtaattga tcggcagcaa ccgccagcac gtagcgttcc tgggattcgt tacaccagat
    14341 ttccagcggg ctcatgcctg gctcgtcgct cagaatgtcg cgcagttcaa atttaccgcc
    14401 acgcccgccg tcgctcacca gttccggcat agcgttagaa agaccgcctg cgccaacgtc
    14461 gtggataaac agtattgggt tggcatcacc aagctgccag caacggtcaa tcacttcctg
    14521 gcagcgacgc tccatctccg ggttgtcgcg ctgtacggaa gcaaagtcga ggtcggcatc
    14581 agactgacca gacgccatgg aagacgccgc gccgccgcca agaccgatgt tcattgccgg
    14641 gccgccgaga acgaccagct tcgcgccaac gttgatctcg cctttttgta cgtgatcggc
    14701 gcgaatgttg ccgatcccgc ccgccagcat gatcggtttg tgataaccgc gcagctcttc
    14761 gccgttgtgg ctgttcactt tttcttcata agtacggaag tagccgttca gtgccggacg
    14821 accaaattcg ttgttaaacg ccgcaccgcc cagcgggcct tcggtcatga tgtccagcgc
    14881 ggtgacaatg cgctcaggct taccgaaatc ttcttcccac ggctgttcga agccaagaat
    14941 tcgcaggttg gaaacggaga aaccaaccaa acccgctttc ggcttcgcgc cgcgcccggt
    15001 ggcaccttca tcgcggattt caccgccgga accggtcgcc gcgcccggcc acggagaaat
    15061 cgccgtcggg tggttgtgag tttcgacttt catcagaata tgcgccggtt cctgatggaa
    15121 atcatagcgg cccgtttcgt ggtcagcaaa gtagcggccc acttcagaac cttccattac
    15181 ggcggcgtta tctttataag cagagagaac gtgatctggc gtggtttcga aagtattttt
    15241 gatcatcctg aacagcgatt tcggctgttg ttcaccgtcg ataatccagt cggcgttaaa
    15301 aattttgtgg cggcagtgct cagagttcgc ctgagcgaac atatacagct cgatgtcgtt
    15361 cgggttacga ccaagctttg tgaaagcatc ctgcagatag tcaatttcat cttccgccag
    15421 agccaggcca agacgcaggt tagcgtcgat cagcgcctga cggccctgcc ccagcaaatc
    15481 aacgcttgtg accggagtcg gttgatggtg ggcaaacaac tgctctgcat catctaaatc
    15541 aaaaaagaca gtttccatca tgcggtcgtg cagttcagcg gtaacctgct gccattgttc
    15601 attggtcagc gtaccggctt ctatatagta agcaacgccg cgctcaaggc ggtttacctg
    15661 ttgtagcccg cagttatggg caatatcggt cgctttcgaa gaccagggag agatggtgcc
    15721 aggacgcggg gtcaccagca ggagtttgcc ttgcggggcg tggctggcga gtgccggacc
    15781 atatttcagc aggcgttcaa gttgtgcgtg ctcatcatcg tttaacggcg cattgaggtc
    15841 agcaaaatgg acatactcgg cgtaaatatt gtgaaccggg agcctggcag cctgaaaacg
    15901 tgccagcagt ttgttgattc ggaatgccga cagtgcaggc gaaccacgca gaatttccat
    15961 cataagtctc tcgtcttcta agctttcggt gtacccaagg gggggggaaa cgggcgtcat
    16021 tataaagaat ctgatgcgct gacgaaaccg tttgcgtgga aataaaatca ccatcgtgaa
    16081 ttagcaacgc gtgccgccaa tggctgtaat aagttgccat ctggcgcagg tttacgcaaa
    16141 atgccgctca tttatgagta aacctttcac tattattacg ttttttcaag ctgggacgcg
    16201 cacgacacag agaattaact aattgaaaaa attaaagatt aattatctgt tcatcggcat
    16261 tctggcactg ctgctcgcgg tcgctctctg gccatccatt ccctggtttg gtaaagccga
    16321 caaccgtatc gccgccattc aagcgcgggg agagttgcgt gtgagcacca ttcatactcc
    16381 cctgacttat aacgaaatca acgggaaacc ttttggcctg gattacgaac tggcgaaaca
    16441 gtttgccgat tacctcggcg taaaactgaa agtgaccgtg cggcagaata tcagccagct
    16501 gtttgacgac cttgataatg gtaacgccga cctgctggcg gcaggactgg tctataacag
    16561 tgagcgggta aaaaattatc agcctggccc tacctattat tccgtgtcac aacaactggt
    16621 ttataaagtg ggtcagtatc gcccacgtac gctgtgcaac ctgacggcgg agcaactcac
    16681 cgttgcaccg ggtcatgtgg tggttaacga tctccagacc ctgaaagaaa caaaattccc
    16741 ggaattaagc tggaaggtag acgacaaaaa aggctctgcg gaattaatgg aagatgtcat
    16801 cgaaggaaaa ctcgattaca ccattgctga ttctgtcgcc atcagcctgt ttcagcgcgt
    16861 tcacccggag ctcgccgtag cgctcgatat caccgatgaa caaccggtga cttggtttag
    16921 cccgttagat ggcgataata ccctttccgc cgccctgctc gacttcttca acgaaatgaa
    16981 tgaagacggt acgctggcac gcattgaaga gaaatacctg gggcatggcg atgattttga
    17041 ttacgtcgat acgcgcacat ttttacgcgc cgtcgatgcg gtactgccgc agttaaagcc
    17101 cctgtttgag aaatacgccg aagaaattga ctggcgtttg ctggccgcta ttgcttatca
    17161 ggaatcgcac tgggatgcac aggccacttc accgacgggt gtgcgcggca tgatgatgtt
    17221 aaccaaaaat accgcgcaaa gcctcggcat tacggatcgt accgatgccg aacagagcat
    17281 cagcggtggc gtgcgttatt tgcaggatat gatgagtaaa gtgccggaaa gtgtgccgga
    17341 gaacgagcgg atctggtttg ccctcgctgc gtacaatatg ggctatgcgc atatgctgga
    17401 tgcccgcgcc ctgacggcaa aaaccaaagg gaatcctgac agttgggctg acgtaaaaca
    17461 gcgtctgcct ttacttagcc agaaacccta ttacagcaag ctgacttacg gctacgctcg
    17521 tggacatgaa gcctacgctt atgtcgaaaa tattcgtaag tatcaaatta gcctggtggg
    17581 ttatctgcaa gagaaagaga agcaggctac agaagcggcg atgcaactgg cgcaggatta
    17641 tccggcggta tcgcctacgg agttgggcaa agagaaattt ccttttctct cgtttctttc
    17701 ccagtcgtca tcaaactatt tgacccattc tccctctctg ctgttttcca ggaaagggag
    17761 tgaagagaaa caaaattaat ccgtcgagga ttgcgctttt ttctgcgctt taatttcctg
    17821 gcggcgcatg cgaaagaagt cactgagcaa cgccgcgcac tcatccgcca gtattccttc
    17881 cgtaatttcc actcggtgat tcatacccgg atgatgcagc acatccatta aagatcccgc
    17941 agcgccagtt ttcgcgtcac gcgcaccaaa gaccacgcga ccaatgcgac tgtggatcat
    18001 cgctccggca cacattacac atggttcaag cgtgacatac aacgtggcgt cgatcagacg
    18061 ataattttgc atcaccagac caccctgccg cagggccatg atttctgcat gtgcggtggg
    18121 atcatggcga ccaatcgggc ggttccaacc ttcgccgatt acccgattgt tatgcactaa
    18181 taccgcgccg accggcactt cccgctcatc ccaggcacgt ttcgccagcg tcagcgcgtg
    18241 acgcatccag tattcgtggc taaattcgac ttcagacaaa aagaaaactc cggttataaa
    18301 agcgcggcgc attatacacg gacgctatgc tttactctat tccagttgct ggagttcacc
    18361 gcgcggggtt actcgccaac gatgctgaca gaaataaagc agcggattgt cctgattact
    18421 gtcgctatag ccactgtaca gccgcagcgg agtgccgatt ttgcgctcca gttgtgcgac
    18481 cttttcatgt cccagacaac gcatcgtcaa tacccaacca ccatagccac gctgaatttg
    18541 gctggcgata agattaaccc gcggcagcca gggcttatcg aaataaaccg cttcaaccag
    18601 cggctgcgga gagccggtaa tcaaccagat atcagcatcg gaacttaaca ggtaggtggt
    18661 taatcgctcc tgaaccagcg gaaaggcggt aacattgtcg cgaaaccagc gcacgaaatc
    18721 ggcctgcaac gtctgtaaac gtgcttcgct gtgaccaaaa gtgcaccccc acagaagcag
    18781 actcatcggc cagcgtgccg cacgaccttt tatcaataac gcaatggcta taatcggtaa
    18841 caacggcagg acaagtaacg cattcagcgg ttggcgacgt agtaaatagc gcagaaaact
    18901 gccgaacata tcctgctgat gcaatgttcc atctaagtca aaaaacacca cacgacgctc
    18961 gtgagttgcc aaaccatact cctctggact gaaacatcct gattaatttt cgctactaca
    19021 tagcctaaca gatagatcat cacttttccg gcaacaatcg accgcatcat ggctaactgg
    19081 aatttttaat tcatggcaat tagcggcaat ggaatataaa attcactcgc gtgtgtctca
    19141 tattgcctgt tgtcgccact atttcatcgc gaggaaagat atgaacggct tacttcgtat
    19201 ccgtcagcgt taccaggggc ttgcccagag tgataaaaaa ctggcggatt atctgctgct
    19261 acaacctgat acggcgcgcc atttaagctc tcagcaactg gccaacgaag ccggagtcag
    19321 tcagtccagc gtcgtgaagt tcgcgcaaaa actcggctat aaaggttttc cggcgcttaa
    19381 gttggcgttg agtgaagcgc tggcaagcca gccggaatcg ccctccgtgc ccattcataa
    19441 ccaaatccgc ggtgatgatc cgttacggct ggtcggcgaa aaactgatta aagaaaatac
    19501 tgccgctatg tacgcaacgc taaacgttaa tagtgaagag aaactgcatg aatgcgtaac
    19561 aatgttgcgc tctgcgcggc ggataattct gaccggtatt ggcgcttcgg gtctggtggc
    19621 gcaaaacttt gcctggaagc tgatgaagat tggcttcaat gctgccgcag tgcgcgatat
    19681 gcatgcgcta ctcgcaacag tacaggcgtc gtcccctgac gatctgttat tagccatttc
    19741 ctacaccggt gtacgacgcg agttaaacct ggcggcagat gagatgctgc gagtgggcgg
    19801 aaaagtgctg gcgattaccg gctttactcc gaatgccctg caacagcgtg cttctcattg
    19861 cctgtatacc attgccgaag aacaagcgac aaacagtgct tcaatctctg cttgtcacgc
    19921 tcagggaatg ttaacggatt tgctgttcat tgcgctgatt cagcaggatc tggaactggc
    19981 accagaacgt attcgtcata gtgaagcgct ggtgaaaaaa ctggtctgag taaagaatgc
    20041 gcgtataatg cccgcccggt ttgtgttgtt ttgagagttt ccttatggcg ttgttaatca
    20101 ctaaaaaatg catcaattgt gatatgtgtg aacccgaatg cccgaatgag gcgatttcaa
    20161 tgggagatca tatctacgag attaacagcg ataagtgtac cgaatgcgta gggcactacg
    20221 agacaccaac ctgccagaag gtgtgcccga tccccaatac tattgtgaaa gatccggcgc
    20281 atgtcgagac agaagaacag ttgtgggata aatttgtgct gatgcaccac gcggataaaa
    20341 tttaatattc tactctggaa gtagagtatt aattatatta ctgggaagcc ttaacgccat
    20401 tatatttatt taattgatga cattagcata atcattcact aagttaattt atatagtatc
    20461 tgccaagaca cttatttata gttattaaag gcgcgtccga ttggttcacc ggacgcacct
    20521 taagtacgtt tccttgtgtt ataagaacag aaggatcagc tgtaaaacag caatgatgat
    20581 tttgatgacc cgtttaatca ggtatcggca atcagtcatt cgtttttcct taaacaagga
    20641 atgcagccgt tcagattagc ccttacatct ccccaaaact gaacgtgcga gttattgagg
    20701 gtgcatgctg cactccacac cagagctttg acgacaccac tcgtttcaat gggggaattc
    20761 tgtggcatgg tgtaaagcac agcaaaatct tcaataacga agccaatttt aatgtactta
    20821 cgaattggcg gtcacgttaa tctttccatc aatattgctt tcttcgtaaa ggctcgagtt
    20881 tttatgctaa agattgcaag ttgcttgtaa aagataagta cactgatcca taatcgctgt
    20941 tgttgagggt gcatgctgca caaaattaaa gttaaaaagt aaaacccccg ttccttacca
    21001 gttcgggggt tttacttttt aaagagaacg gtattatttt aactttcaat aattaccgtg
    21061 gcacaagcat agtggcgttc atctgccagc gttacatgca tatttacaac gccgagcttt
    21121 tccgccagtt ttaatgcctc accccatagc cgtagccgtg gtttgccgag ctcatcattg
    21181 aatacttcaa attgattaaa cgccagacca ttgcggatcc cggtgccaaa cgcttttgct
    21241 gcggcttctt tcacagcaaa acgcttcgcc agaaaacgca ccggctggtg gtgcgttttc
    21301 cagattgccc attcgttatc gcttaatacg cggcgtgcca ggcgctcacc ggatcgggcg
    21361 atcactgctt ctatgcgagc gatctctacg atatccgtgc ctaaacctaa tattgccatt
    21421 agccacgcgc ttccagcatc agacgcttca tttctgccac cgcatctttc agtccggtca
    21481 tcactgcacg gccaataatg gcatgaccga tattcagttc atgcatctca gggatggcgg
    21541 caatggcttt cacgttgtga taggtcagac cgtgtccggc gttaactttc agaccgagac
    21601 tagcggcaaa ggtcgcggct ttggcgatac gcaccagctc ttgcgcctgt tcggcgtcag
    21661 ttttggcatc agcatagcaa ccggtgtgga tctcgataaa cggtgcgcca acctctgccg
    21721 cagctttgat ctgctcttca tcggcgtcga taaagagaga aacctgaatc ccggcatctg
    21781 tcagacgttt gcaggcatcg cgcatttttt cacgctgccc tgcaacgtcc aggccgcctt
    21841 cggttgttac ttcctgacgc ttttccggta ccaggcagca aaaatgtggc ttcgtctcaa
    21901 cggcgatcgc cagcatctct tcggtcactg ccatctccag attcattcgg gtatccagcg
    21961 tctgccgcag gatgcgcaca tcgcggtcag taatgtggcg gcgatcttca cgtaaatgca
    22021 cggtaatgcc gtccgctccc gcctgctcgg caataaacgc cgcctgcacc ggatccgggt
    22081 aagcagtacc gcgtgcgtta cgcagcgttg caatatggtc aatgttgacg cctaacagta
    22141 attcagccat gacaatcctc atcattcata atgtgttttc accgttcgct taggcataaa
    22201 ctgccggaac agttccctgc tctttaatgg tttaccgcca agatacggct taagcgccat
    22261 gcgggtaaag cgtttcgcgg cgcgtagtgt gtctgcgtca ggaaattccc gcgcgtttaa
    22321 cgcttttaac tgccttccgg tgaacgtttt attgtcgata acgacgcttg cgataaaccc
    22381 tttttcttcg cgataacgat acgtcatggt gtcatctacc ggctcgccgc tacccgcgca
    22441 ataggtaaaa ttgacgccat agcccagatg cccgagcagt gccagttcaa agcggcgcag
    22501 cgcgggttct ggcgtaccag tggcacctgc aagagactga atgcagtgca aataatcgaa
    22561 aaagagttca gagaagcgcg tctcgtattc cagtacgcgg gagagaagtt cgttgatgta
    22621 cagaccgctg taaagcgtga taccgcttaa tggcagcgcc agcgagacag cttcagcact
    22681 gcgcagcgtt ttgacttcgc cacgcccgcc gaaacgtagc aagagagggg tgaaaggctg
    22741 taatgcacct ttcagagtag agcgtttaga gcgtgcgcct ttggcaacca gacgcacgcg
    22801 acccgattcc tccgtgaaga cgtccagcat caggctggtt tcgctccacg ggcgactatg
    22861 caggacaaat gcgcgctgcc agccttccat cggagtgact cttaaagatc gtcaacgtaa
    22921 ccgagactgc gcagtgcgcg ttcgtcgtcg gcccaaccgg atttcacttt tacccacagt
    22981 tcaaggtgga caggcgcttc gaacatttcc tgcatgtctt tacgcgcttc aatcccgatg
    23041 gttttgatct tggccccttt gttgccaata accatcttct tctgcccttc acgctcaacg
    23101 agaatcaaac cattgatgtc ataaccaccg cgttcgttag agacgaaacg ttcgatctcc
    23161 acggtcacgg agtacggcag ttcagcgccg aggaaacgca tcagtttttc gcggatgatt
    23221 tcagacgcca taaaacgctg tgagcgatcg gtgatgtaat cttccgggaa gtgatgggtc
    23281 gcttcaggca gatgcttacg cacgattgct gcgatagtgt cgacattcag cccggtttca
    23341 gcagagatcg gcacgatatc gaggaagttc atctgacttg ccaggaactg taagtgcggc
    23401 agcagatcgg ctttttcctg cacgttatcc actttgttca ccgcgaggat caccggcgct
    23461 ttgccatcgc gcagtttgtt gagcaccatt tcgtcgtccg gcgtccagcg ggtgccttca
    23521 acgacaaaaa tcaccagctc aacgtcgcca atagagctgc tcgccgcttt gttcatcagg
    23581 cggttaatag cgcgtttttc ttccatatgc aggccagggg tatcaacgta gatcgcctga
    23641 tacgcgcctt cagtatggat ccccacaatg cggtgacgag ttgtttgcgc tttgcgggag
    23701 gtgatggaga tcttctgccc cagcagtttg ttcaacaatg tggatttgcc aacgttcgga
    23761 cgtccgacga tggcaataaa tccgcagtaa cttttatcga tgctcattcc agctccagtt
    23821 ttttcaacgc ctgttcggcg gcagcctgct cagccttacg acggcttgaa cctgtgccaa
    23881 ccaccggttc actcaggccg ctgacctggc agtggatagt aaattcctga tcgtgcgctt
    23941 cgccacgtac ctggactacc agataagtcg gcagcggcag atggcgaccc tgcaaatatt
    24001 cttgcaagcg cgttttcgga tctttttgtt tatcgcctgg gctaatttcg tccaaacgag
    24061 tttgatacca gttgaggatt aatttctcga cggtttgaat atcactgtcg aggaatacgc
    24121 caccaattaa tgcttcgacg gtatcggcga gaattgactc acgacgaaat ccaccgcttt
    24181 taagttcacc aggccctaaa cgtaagcact cgcctaactc aaattcgcgc gccagttccg
    24241 ccagcgtatt gccacggacc agcgtggcgc gcatccggct catatcgcct tcatccacac
    24301 gagggaaacg gtgataaagc gcattggcga taacgtagct cagaatagag tcgcctaaaa
    24361 attctaaacg ctcgttatgt ttgctgctgg cactacgatg agttaatgcc tgctgcaaca
    24421 gttcctgatg attaaaagtg tagcccagct tccgttgaag ccgattaatt acgatggggt
    24481 tcatgcgata ccaataaata aatgcgtcaa caattcagca cacgaaacag acctgatata
    24541 catggctctg ctaactgctt cgctgcagtt tcagtttacc ggtatatggg gaccaacgct
    24601 gtttcgtgtg ccgtggcaac ctggaggtgc caaccttaaa cttcggggga atattctata
    24661 cacaacgacg ggggatgtcg ttagccacgg gagatttatc tcataaataa ttcacgttgt
    24721 cgccataacg gcgacaacgt gaacgaagat gggctattaa tggatgccgc caatgcgact
    24781 taagcgcaca cctgtcggcc attcgccttc ttgcttatcg aaactcatcc agatagccgt
    24841 tgcccgaccg accagattcg cttcaggcac aaaaccccag taacggctgt ccgcgctgtt
    24901 gtcgcggttg tcgcccatca tgaagtattg tcccggcgga acaatccagg ttgccagttg
    24961 ttgccctggc tgttggtaat acatccccac ctggtcctgc gcaatcggca ctgtcagaat
    25021 tcggtgcgtc acatcaccca atgtctcttt acgctcggaa agacgaattc cattttcttt
    25081 ggtttcgttt ttcggcactt caaagaatcc gctggtcgct tccccaccat tacggcgtga
    25141 gaaggtctga acgaaatcgc tcggttccac gttggagtag gtgaccggta gcgcgttttc
    25201 acacgcctgg ccggaactgc atcccggttg aatcgtcagc tcttttgaga ccggatcgta
    25261 agtgacttta tcgcccggta aacccaccgc gcgcttgatg taatcaagct ttggatcttc
    25321 cggatattta aagaccacga tatcgccgcg tttcggatga ccggtttcga tcagcgtttt
    25381 ctggtagata ggatctttaa tgccataagc aaacttctct accagaataa aatcaccgat
    25441 taacagagtc ggcatcatcg aacctgacgg gatctggaac ggttcataaa taaacgaacg
    25501 tacaatcaat acgatagcca gcaccggaaa aacagaagca ccggtttcca gccagccagg
    25561 cttcggcgca acctttttca gggttgcttt atccagtgag tcaccggcag ccgcctgcgc
    25621 cgctgcctga cgttcccgcc gtttaggtgc gaaaaagaat ttatccacgc accataaaat
    25681 gcccgtcacc agtgtggcaa tcaccagaat cagggcaaac atattcgcca tgccaactcc
    25741 taagggttat ttgttgtctt tgccgacgtg cagaatggcg aggaacgctt cctgcggcag
    25801 ctcgacgtta ccgatctgct tcatgcgttt cttaccttct ttctgcttct gcagcagctt
    25861 tttcttacgg ctgatatcgc cgccataaca tttagccagt acgtttttac gcagctgttt
    25921 cacggtggat cgcgcaataa tgtgcgtacc aatcgctgcc tgaatggcga tatcaaactg
    25981 ctggcgtggg atcagatctt tcatcttctc caccaactcg cgaccgcggt tttgcgaatt
    26041 atcacggtgg gtgatcagcg ccaacgcatc aacacgttca ccgttgatta atacgtctac
    26101 acgtaccatg tcggacgcct ggaagcgttt gaagttgtaa tccagagacg cataaccacg
    26161 cgaggtagat ttcaggcgat cgaagaagtc gagcaccact tccgccatcg ggatctcgta
    26221 cgtcagcgcc acctgattac cgtggtaaac catattggtc tgcacgccgc gtttttctac
    26281 gcacagcgta ataacgttgc cgagatatgc ctgcggcagc agcatgtgac actctgcaat
    26341 cggctcgcgc agttcgtaaa tgttatttac cgcaggcagc ttggatgggc tgtcgacgta
    26401 gataacttcc cttgacgtgg tttcaacttc atacactacg gtcggcgcag tggtgatcag
    26461 atccagatcg tattcacgtt ccagacgttc ctggatgatc tccatgtgca gcaggccaag
    26521 gaagccgcag cggaaaccaa agcccagcgc gctggagctt tccggctcat agaacagtga
    26581 ggcatcattc aggctgagtt tacccagcgc gtcacggaag gcttcatagt cgtcggaact
    26641 taccgggaac agaccggcgt atacctgcgg tttgactttc ttaaagccag gcagcgcctt
    26701 ttctgccgga ttacgcgcca gcgttaaggt atcgccgact ggagcgccgt ggatatcttt
    26761 aatcgcacat accagccagc ctacttcgcc acatttcagt tcagtgcggt caacctgttt
    26821 cggcgtgaag atgcccagac ggtcggcgtt ataggtctgc ccggtactca tgactttcac
    26881 tttgtcgccc ttacgcaggg tgccgttttt aatacggata agtgaaacaa cgcccaggta
    26941 gttgtcgaac catgagtcga taattagtgc ctgcaacggg ccttccggat cgccttccgg
    27001 cggcggaatg tcgcgcacca gacgttcgag aacgtcctgc acgccaacgc cggttttcgc
    27061 tgaacagcgc accgcgtcag tggcgtcgat gccgacgata tcttcaattt cttccgccac
    27121 gcgttcagga tcggctgccg gcaggtcaat cttgttcagt actggcacca cttcgagatc
    27181 catttccatg gcggtgtagc agtttgccag ggtttgcgct tccacgccct gcccggcgtc
    27241 gaccaccagc aatgcacctt cacaggcagc cagcgaacgg gaaacttcat aggagaagtc
    27301 tacgtggccc ggggtgtcga taaagttaag ctgataggtt tcgccgtcag acgctttgta
    27361 gtccagcgtc acgctttgcg ctttgatggt aatgccacgc tcacgctcaa gatccatgga
    27421 atcgagaacc tgcgcctcca tttcacggtc agacaggcca ccgcagatct ggataatacg
    27481 gtcagacagc gtcgatttac cgtggtcaat gtgagctatg atcgaaaagt tacgtatatt
    27541 cttcataaag tatgattatt gtgccttaat gcccggttaa ccaggctttt agaagtcgct
    27601 gttctgagct taacgtctgt attaatagaa acgccgcatt ctacactaca acattgaggc
    27661 gaggaaatgt tcataccgta tggattgtgg tatctggaaa cgtcctcgca tttgttatgc
    27721 aaaatgcaac aaagccagtg aaatcactgg ctcgcgtctt ccgaagatgt ttcaaatcgc
    27781 acaaggccag gcggcaatgc cacgcttaag atgatcggtt gccattctgc ccgggcagca
    27841 aacttacgcg agtagccgcg cgcaatcagg aacccgccaa taccgccgag gaccgcacca
    27901 cataatgctg cgacgtcaga agcaaagagt agctgaaata gcgaagcgat gaggaataat
    27961 cccaccagcg gcgacatata aaccagtaat gcggagctaa gcaggctgcc ttcggcgatc
    28021 cccaattcca ctttttgccc cggcactaac ggttcatcac agggtacgac aatggtatgc
    28081 gtggtttgcg ggccaagttt attcaacacg cggctaccgc aaccggcgcg tgaagcgcag
    28141 ctgctgcatg aagctttaac atcacaactg accagcgcct gcccgttttg ccaggagacg
    28201 acggtagccc actctttgat cattgcgctg ccccgaactt aatattctcg gcaatgcgtt
    28261 tcgccgtttg cggcggcagt tcaccgacaa tggtgatttc ggcgttatca cgtacgcttg
    28321 tactgacggt tctgcgtccg gtgcgcaaca tctgatcggt gctcgatggc gtagcgcggt
    28381 taacgtttac cgagaagctg aataatccgt cagaatagag acgtgattcg ataggcatgt
    28441 tgtccatcgt cggtagcgga cgtcgactac tggaaacttc gctaaaaccc tgtggcaacc
    28501 aggttggcgt ccagctgaat ttagcttttt cacctacagg aacagaaagc aacggcggca
    28561 aatttgcctt cgccagcgtc tgcatactgc tgctgatatc ctgattgacg ttaaaagcaa
    28621 tcacgcgaaa ttgttccagc gtttcaccat cgcgatcaag gagatcaacc cgcatcggta
    28681 atttcgattc ggtgtccatc cacacgatgt agctgtagcg tgtaccatct cgggcaacca
    28741 cgcgaatgac ttcgcaaaga cgatcagcaa tacgcgtgcg cccgacggag ataaagtcgt
    28801 agtaaggaga aaggcgtttg aaatcggtat agatgagcga tggcagagaa tcaacaatgt
    28861 aatcgccatt aagcgtgaac ggttcaagtc ccggttcaaa atagctgatt tcatcgccgc
    28921 gctgtaccac ttcccggcgc gggccatcca tttgcaacaa ttgtgcaaga ggacggttat
    28981 cgaggcgtgc atgtcgataa cgcagagact caacaccctg tttattgatg ctgatgaatg
    29041 acagctcgta attcagtgac tgactggcca ggttcatctg ctgtaataac gccccggacg
    29101 cgggagtggc cgaggcgtta gcagagaata acaggctacc tgtcactaat gacatggcaa
    29161 accaaagttg cttcattact gcgattgcgt tcctaaagtt tgaattcctg gcacctgtac
    29221 agcggcttgc tgggtttgcg cctgctcaaa ctgaagctgt tcagagtgga gtcggcgttg
    29281 cagttcgtaa tcctgcaaca ttgcattaat gcgacgacgc tgctcctgta cctgctgctg
    29341 ttgaccattg tttgcggtcg cttcagaagg tactcccagg cttaccgggc tggctttacc
    29401 catcatcggc agtgtattaa ataccggcgt ttcgggctgc tgggacgttt cagattgtcc
    29461 attatagtgc tggacgccaa cgataactgc aagcgatacg catgctgcta cgcccatttg
    29521 ggtaagctgt gccgcccacg gacgtacttt ctgccagaat ggcattttct gccattgatg
    29581 cggcgcaggc tgggcttccg ggatcaatgt cgccggttga cgtactggct cttcttcaat
    29641 ggcggccatc acgcgtgaag agatatcgaa atggagcacc tcgggagtat caccccgcat
    29701 tgagtcacgg attaagtgat agctttccca agttttctgc atttctgggt tatgagccag
    29761 ttcgttaagc agctcactat ccagcgtttc gccatccatt aaagcggaaa gttgttcttt
    29821 ctgcatgcct aataccctta tccagtatcc cgctatcgtc aacgcctgat aagcggttga
    29881 actttgttat caatagcttc cctcgctcgg aagatacgtg aacgcaccgt acctaccgga
    29941 caatccatga tagcggctat ctcttcatag ctcaggccat ccagctcccg caaggttatt
    30001 gccatgcgca aatcttccgg gagggactca atagttcgga aaactatctg tctcagttct
    30061 tctgacaaca ttaagttctc agggttcgaa atttctttca acgcgccgcc actttcgaag
    30121 ttttcagctt caatggcatc cacatcactg gaaggtggac gacgcccctg agcaaccagg
    30181 taatttttcg ctgtatttac agcaatccga tacagccatg tataaaaagc gctatctccc
    30241 cggaacgaat ccagcgcacg ataggcttta ataaaagctt cttgtaccac atcgggaaca
    30301 tcacccgacg gcacatagcg ggaaaccaga ctcgccactt tatgctgata gcgcactacc
    30361 agtaagttaa aggctttctg atctcccttc tggacccgtt caaccaggac ctggtccgtt
    30421 aactgctcgc tcatccgagg taaagtctcc ccaaaccaaa tttccacgcg ctatcgaaac
    30481 gccactccat tagctgcaat ttgagcaagc aaagggttag agtgtctcgt ttttgtaaag
    30541 ttccgtaacg catctgtttt tgtttgtcat gctgtagacg gatcattatc tatcattata
    30601 agtctacaga atctgaacat cgcattatct gtgtagaaat gcccatttaa ctgcctgaag
    30661 agtaacccaa cggccttttt atttcaccac ctaatcctcc accagccagt aacttctctt
    30721 tttctcgccg ccctgcatca gcgtgtttag caactgtaac aaatattaaa atagcaggtg
    30781 tttattcgca caacatgatg ctatgctgac caaactgtgt ttagtaaatt aaacaaagaa
    30841 aatgaatact ctccctgaac attcatgtga cgtgttgatt attggtagcg gcgcagccgg
    30901 actttcactg gcgctacgcc tggctgacca gcatcaggtc atcgttctaa gtaaaggccc
    30961 ggtaacggaa ggttcaacat tttatgccca gggcggtatt gccgccgtgt ttgatgaaac
    31021 tgacagcatt gactcgcatg tggaagacac attgattgcc ggggctggta tttgcgatcg
    31081 ccatgcagtt gaatttgtcg ccagcaatgc tcgttcctgt gtgcaatggt taattgacca
    31141 gggggttttg tttgataccc acgttcaacc gaatggcgaa gaaagctacc atctgacccg
    31201 tgaaggagga catagtcacc gtcgtattct tcatgccgcc gacgccaccg gtagagaagt
    31261 acaatccacg ctggtgagca aggcgcagaa ccatccgaat attcgtgtgc tggagcgcag
    31321 caacgcagtt gatctgattg tctctgacaa aattggcctg ccgggcacgc gacg
//
LOCUS       DAJVSY010000030        30870 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.030, whole genome shotgun sequence.
ACCESSION   DAJVSY010000030 DAJVSY010000000
VERSION     DAJVSY010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 30870)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30870)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30870
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.030"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            248..631
                     /gene="secE"
                     /locus_tag="OQQ19_001256"
     CDS             248..631
                     /gene="secE"
                     /locus_tag="OQQ19_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007665874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HCS1802950.1"
                     /translation="MSANTEAQGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIMLPLR
                     ALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTA
                     VMSLILWGLDGILVRLVSFITGLRF"
     gene            633..1178
                     /gene="nusG"
                     /locus_tag="OQQ19_001257"
     CDS             633..1178
                     /gene="nusG"
                     /locus_tag="OQQ19_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005280494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HCS1802951.1"
                     /translation="MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMV
                     PTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAP
                     ISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV
                     SVSIFGRATPVELDFSQVEKA"
     gene            1338..1766
                     /gene="rplK"
                     /locus_tag="OQQ19_001258"
     CDS             1338..1766
                     /gene="rplK"
                     /locus_tag="OQQ19_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HCS1802952.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     KTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGAGKPNKDKVGKIS
                     RAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED"
     gene            1770..2474
                     /gene="rplA"
                     /locus_tag="OQQ19_001259"
     CDS             1770..2474
                     /gene="rplA"
                     /locus_tag="OQQ19_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HCS1802953.1"
                     /translation="MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDV
                     AVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLAD
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
                     VRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTM
                     GAGVAVDQAGLSASVN"
     gene            2887..3384
                     /gene="rplJ"
                     /locus_tag="OQQ19_001260"
     CDS             2887..3384
                     /gene="rplJ"
                     /locus_tag="OQQ19_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002438625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HCS1802954.1"
                     /translation="MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKA
                     GREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPTLIAYSMEHPGAAARLFKEFAKA
                     NAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRD
                     AKEAA"
     gene            3451..3816
                     /gene="rplL"
                     /locus_tag="OQQ19_001261"
     CDS             3451..3816
                     /gene="rplL"
                     /locus_tag="OQQ19_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HCS1802955.1"
                     /translation="MSITKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAVAAG
                     PVEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKD
                     DAEALKKALEEAGAEVEVK"
     gene            4136..8164
                     /gene="rpoB"
                     /locus_tag="OQQ19_001262"
     CDS             4136..8164
                     /gene="rpoB"
                     /locus_tag="OQQ19_001262"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004870488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HCS1802956.1"
                     /translation="MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE
                     GQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRL
                     VIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE
                     QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ
                     LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE
                     TLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE
                     DRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN
                     RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG
                     PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD
                     EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE
                     MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ
                     NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN
                     VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF
                     SRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE
                     AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD
                     ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ
                     RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL
                     PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK
                     AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
                     ESFNVLLKEIRSLGINIELEDE"
     gene            8241..12464
                     /gene="rpoC"
                     /locus_tag="OQQ19_001263"
     CDS             8241..12464
                     /gene="rpoC"
                     /locus_tag="OQQ19_001263"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HCS1802957.1"
                     /translation="MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETI
                     NYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERM
                     GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQIL
                     TEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLT
                     KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN
                     NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK
                     QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT
                     TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
                     PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL
                     GLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAK
                     TSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQI
                     MYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKV
                     IDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQL
                     AGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR
                     RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADI
                     LVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA
                     IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK
                     LVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITE
                     VSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDV
                     LIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE
                     ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
                     ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR
                     KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEA
                     PAAPQVTAEDASASLAELLNAGLGGSDNE"
     gene            12677..13216
                     /locus_tag="OQQ19_001264"
     CDS             12677..13216
                     /locus_tag="OQQ19_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat-shock protein C"
                     /protein_id="HCS1802958.1"
                     /translation="MKQEVEKWRPFGHPDGDIRDLSFLDAHQAVYVQHHEGKEPLEYR
                     FWVTYSLHCFTKDYEHQTNEEKQSLMYHAPKESRPFCQHRYNLARTHLKRTILALPES
                     NVIHAGYGSYAVIEVDLDGGDKAFYFVAFRAFREKKKLRLHVTSAYPISEKQKGKSVK
                     FFTIAYNLLRNKQLPQPSK"
     gene            complement(13671..14759)
                     /gene="thiH"
                     /locus_tag="OQQ19_001265"
     CDS             complement(13671..14759)
                     /gene="thiH"
                     /locus_tag="OQQ19_001265"
                     /EC_number="4.1.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HCS1802959.1"
                     /translation="MKTFSDRWRQLDWDDIRLRINGKTAVDVERALNASQFTRDDMMA
                     LLSPAASGYLEQLAQRAQRLTRQRFGNTVSFYVPLYLSNLCANDCTYCGFSMSNRIKR
                     KTLDEADIARESAAIREMGFEHLLLVTGEHQAKVGMDYFRRHLPALREQFSSLQMEVQ
                     PLAKTEYAELKQLGLDGVMVYQETYHEATYARHHLKGKKQDFFWRLETPDRLGRAGID
                     KIGLGALIGLSDNWRVDCYMVAEHLLWLQQHYWQSRYSVSFPRLRPCTGGIEPASIMD
                     ERQLVQTICAFRLLAPEIELSLSTRESPWFRDRVIPLAINNVSAFSKTQPGGYADNHP
                     ELEQFSPHDDRRPEAVAAALTAQGLQPV"
     gene            complement(14756..15526)
                     /gene="thiG"
                     /locus_tag="OQQ19_001266"
     CDS             complement(14756..15526)
                     /gene="thiG"
                     /locus_tag="OQQ19_001266"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418418.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HCS1802960.1"
                     /translation="MLRIADKTFDSHLFTGTGKFASSQLMVEAIRASGSQLVTLAMKR
                     VDLRQHNDAILEPLIAAGVTLLPNTSGAKTAEEAIFAAHLAREALGTNWLKLEIPPDA
                     RWLLPDPIETLKAAEMLVQQGFVVLPYCGADPVLCKRLEEVGCAAVMPLGAPIGSNQG
                     LETRAMLEIIIQQATVPVVVDAGIGVPSHAAQALEMGADAVLVNTAIAVADDPVNMAK
                     AFRLAVEAGLLARQSGPGSRSHFAHATSPLTGFLEASA"
     gene            complement(15528..15728)
                     /gene="thiS"
                     /locus_tag="OQQ19_001267"
     CDS             complement(15528..15728)
                     /gene="thiS"
                     /locus_tag="OQQ19_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HCS1802961.1"
                     /translation="MQILFNDQPMQCATGQTVHELLEQLDQRQAGAALAINQQIVPRE
                     QWTQHILQDGDQILLFQVIAGG"
     gene            complement(15712..16467)
                     /gene="thiF"
                     /locus_tag="OQQ19_001268"
                     /pseudo
     CDS             complement(15712..16467)
                     /gene="thiF"
                     /locus_tag="OQQ19_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709786.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole biosynthesis adenylyltransferase ThiF"
     gene            complement(16460..17095)
                     /gene="thiE"
                     /locus_tag="OQQ19_001269"
     CDS             complement(16460..17095)
                     /gene="thiE"
                     /locus_tag="OQQ19_001269"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709787.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HCS1802962.1"
                     /translation="MYQPDFPPVPFRLGLYPVVDSVQWIERLLDAGVRTLQLRIKDRR
                     DEEVEADVVAAIALGRRYNARLFINDYWRLAIKHQAYGVHLGQEDLQATDLNAIRAAG
                     LRLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLEQLARHVERLADYP
                     TVAIGGISLARAPAVIATGVGSIAVISAITQAADWRLATAQLLEIAGVGDE"
     gene            complement(17095..18990)
                     /gene="thiC"
                     /locus_tag="OQQ19_001270"
     CDS             complement(17095..18990)
                     /gene="thiC"
                     /locus_tag="OQQ19_001270"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HCS1802963.1"
                     /translation="MSATKLTRREQRARAQHFIDTLEGTAFPNSKRIYLTGTHSGVRV
                     PMREIQLSPTLIGGSKEQPQFEENEAIPVYDTSGPYGDPQIAINVQQGLAKLRQPWID
                     ARGDTEELTVRSSDYTKARLADDGLDELRFSGVLTPKRAKAGRRVTQLHYARQGIITP
                     EMEFIAIRENMGRERIRSEVLRHQHPGMSFGARLPENITAEFVRDEVAAGRAIIPANI
                     NHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWSTRWGADTVMDLSTGRYI
                     HETREWILRNSPVPIGTVPIYQALEKVNGIAEDLTWEAFRDTLLEQAEQGVDYFTIHA
                     GVLLRYVPMTAKRLTGIVSRGGSIMAKWCLSHHQENFLYQHFREICEICAAYDVSLSL
                     GDGLRPGSIQDANDEAQFAELHTLGELTKIAWEYDVQVMIEGPGHVPMQMIRRNMTEE
                     LEHCHEAPFYTLGPLTTDIAPGYDHFTSGIGAAMIGWFGCAMLCYVTPKEHLGLPNKE
                     DVKQGLITYKIAAHAADLAKGHPGAQIRDNAMSKARFEFRWEDQFNLALDPFTARAYH
                     DETLPQESGKVAHFCSMCGPKFCSMKISQEVRDYAATQTIEMGMADMSENFRARGGEI
                     YLRKEEA"
     regulatory      complement(19071..19171)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(19224..19700)
                     /gene="rsd"
                     /locus_tag="OQQ19_001271"
     CDS             complement(19224..19700)
                     /gene="rsd"
                     /locus_tag="OQQ19_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma D regulator"
                     /protein_id="HCS1802964.1"
                     /translation="MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKE
                     SYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQ
                     IMDYYDSSLETAIDHDNYLEFQKVLSDIGEALEARFVLEDKLILLVLDAARVKHPA"
     gene            19795..20568
                     /gene="nudC"
                     /locus_tag="OQQ19_001272"
     CDS             19795..20568
                     /gene="nudC"
                     /locus_tag="OQQ19_001272"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HCS1802965.1"
                     /translation="MDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRAL
                     QIGEWQGEPVWLVQQQRRHDMGSVRQVIDLDVVLFQLAGRGVQLAEFYRSHKYCGYCG
                     HEMYPSKTEWAMLCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGF
                     VEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPK
                     ELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEYE"
     gene            20608..21672
                     /gene="hemE"
                     /locus_tag="OQQ19_001273"
     CDS             20608..21672
                     /gene="hemE"
                     /locus_tag="OQQ19_001273"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HCS1802966.1"
                     /translation="MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKVTRAQAG
                     DFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSP
                     VTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRD
                     YQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIA
                     DARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVP
                     PEHAGVFVEAVHRLSEQYHR"
     gene            21682..22353
                     /gene="nfi"
                     /locus_tag="OQQ19_001274"
     CDS             21682..22353
                     /gene="nfi"
                     /locus_tag="OQQ19_001274"
                     /EC_number="3.1.21.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease V"
                     /protein_id="HCS1802967.1"
                     /translation="MDLASLRAQQIELASSVIREDRLDKDPPDLIAGADVGFEQGGEV
                     TRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQKPDLVFV
                     DGHGISHPRRLGVASHFGLMVDVPTIGVAKKRLCGKFEPLSSEPGALAPLMDKGEQLA
                     WVWRSKARCNPLFIATGHRVSVDSALAWVQRCMKGYRLPEPTRWADAVASERPAFVRY
                     TANQP"
     gene            22396..22986
                     /locus_tag="OQQ19_001275"
     CDS             22396..22986
                     /locus_tag="OQQ19_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjaG family protein"
                     /protein_id="HCS1802968.1"
                     /translation="MLQNPIHLRLERLESWQHVTFMACLCERMYPNYAMFCQQTGFGD
                     GQIYRRILDLIWETLTVKDAKVNFDSQLEKFEEAIPSADDFDLYGVYPAIDACVVLSE
                     LVHSRLSGETLEHAVEVSKTSITTVAMLEMTQVGREMSDEELKENPAVEQEWDIQWEI
                     FRLLAECEERDIELIKGLRADLREAGESNIGIIFQQ"
     gene            23173..23445
                     /gene="hupA"
                     /locus_tag="OQQ19_001276"
     CDS             23173..23445
                     /gene="hupA"
                     /locus_tag="OQQ19_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein HU-alpha"
                     /protein_id="HCS1802969.1"
                     /translation="MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQL
                     VGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK"
     gene            23458..24153
                     /locus_tag="OQQ19_001277"
     CDS             23458..24153
                     /locus_tag="OQQ19_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1481 domain-containing protein"
                     /protein_id="HCS1802970.1"
                     /translation="MNSFNEGVVSPLLSFWRRSLMLAGALLLTACSHNSSLPPFTASG
                     FAEDQGAVRIWRKDSGDNVHLLAVFSPWRSGDTTTREYRWQGDNLTLININVYSKPPV
                     NIRARFDDRGDLSFMQRESDGEKQQLSNDQIDLYRYRADQIRQISDALRQGRVVLRQG
                     RWHAMEQTVTTCEGQTIKPDLDSQAIAHIERRQSRSSVDVSVAWLEAPEGSQLLLVAN
                     SDFCRWQPNEKTF"
     gene            complement(24155..24580)
                     /gene="zraP"
                     /locus_tag="OQQ19_001278"
     CDS             complement(24155..24580)
                     /gene="zraP"
                     /locus_tag="OQQ19_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc resistance sensor/chaperone ZraP"
                     /protein_id="HCS1802971.1"
                     /translation="MKRNTKIALVMMALSAMAMGSTSAFAHGGHGMWQQNAAPLTSEQ
                     QTAWQKIHNDFYAQSSALQQQLVTKRYEYNALLAANPPDSSKINAVAKEMENLRQSLD
                     ELRVKRDIAMAEAGIPRGAGMGMGYGGCGGGGHMGMGHW"
     gene            24818..26194
                     /gene="zraS"
                     /locus_tag="OQQ19_001279"
     CDS             24818..26194
                     /gene="zraS"
                     /locus_tag="OQQ19_001279"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     ZraS"
                     /protein_id="HCS1802972.1"
                     /translation="MRFMQRSKDSLAKWLSAILPVVIVGLVGLFAVTVIRDYGRETAA
                     ARQTLLEKGSVLIRALESGSRVGMGMRMHHAQQQALLEEMAGQPGVRWFAVTDEQGTI
                     VMHSNSGMVGKQLYSPQEMQQLHPGDEEAWRRIDSADGEPVLEIYRQFQPMFAAGMHR
                     MRHMQQYAATPQAIFIAFDASNIVSAEDREQRNTLIILFALATVLLASVLSFFWYRRY
                     LRSRQLLQDEMKRKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQL
                     AQVMAKEADRLNRVVSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRF
                     TANDTLPEIQADPDRLTQVLLNLYLNAIQAIVQHGVISVTVSESGAGVKISVTDSGKG
                     IAADQLEAIFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLPVN
                     ITRKDPQG"
     gene            26191..27515
                     /gene="zraR"
                     /locus_tag="OQQ19_001280"
                     /pseudo
     CDS             26191..27515
                     /gene="zraR"
                     /locus_tag="OQQ19_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418432.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent response regulator
                     transcription factor ZraR"
     gene            complement(27512..28801)
                     /gene="purD"
                     /locus_tag="OQQ19_001281"
     CDS             complement(27512..28801)
                     /gene="purD"
                     /locus_tag="OQQ19_001281"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HCS1802973.1"
                     /translation="MKVLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPALQ
                     NVAIGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGVVDTFRAAGLKIFGPTAGAAQLE
                     GSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMT
                     LEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRV
                     GDKDTGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMI
                     DKQGNPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACESKLDEKTSEWDERASLGV
                     VMAAGGYPGDYRTGDVIHGLLLEEVAGGKVFHAGTKLADDEQVVTNGGRVLCVTALGH
                     TVAEAQKRAYALMTDIHWDDCFCRKDIGWRAIEREQN"
     gene            complement(28813..30402)
                     /gene="purH"
                     /locus_tag="OQQ19_001282"
     CDS             complement(28813..30402)
                     /gene="purH"
                     /locus_tag="OQQ19_001282"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HCS1802974.1"
                     /translation="MQQRRPVRRALLSVSDKAGIVEFAQALSARGVELLSTGGTARLL
                     AEKGLPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDAIMEEHQIQPIDMVV
                     VNLYPFAQTVAREGCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYDAIIKEM
                     DDNEGSLTLATRFDLAIKAFEHTAAYDSMIANYFGSMVPAYHGESKEAAGRFPRTLNL
                     NFIKKQDMRYGENSHQQAAFYIEENVKEASVATATQVQGKALSYNNIADTDAALECVK
                     EFAEPACVIVKHANPCGVAIGNSILDAYDRAYKTDPTSAFGGIIAFNRELDAETAQAI
                     ISRQFVEVIIAPSASEEALKITAAKQNVRVLTCGQWGERVPGLDFKRVNGGLLVQDRD
                     LGMVGAEELRVVTQRQPTEQELRDALFCWKVAKFVKSNAIVYAKNNMTIGIGAGQMSR
                     VYSAKIAGIKAADEGLEVKGSSMASDAFFPFRDGIDAAAAAGVTCVIQPGGSIRDDEV
                     IAAADEHGIAMLFTDMRHFRH"
BASE COUNT         7313 a         7973 c         8422 g         7162 t
ORIGIN      
        1 gcaaaagttc tgagctaatt gccgataaca tttgactcaa tgcgcactaa aagggcatca
       61 tttgatgccc tttttgcacg ctttcgtacc agaacctggc tcatcagtga ttttctttgt
      121 cataatcatt gctgagacag gctctgttga gggcgtataa tccgaaaagc taatacgcgt
      181 ttcgatttgg tttgcctcgc gatcgcgggg tgaaaatgtt tgtagaaaac ttctgacagg
      241 ttggtttatg agtgcgaata ccgaagctca aggaagcggg cgcggcctgg aagcgatgaa
      301 gtgggtcgtt gtggtggcat tgctcttggt ggcgattgtc ggcaactacc tttatcgcga
      361 cattatgctg ccgctgcgtg cgctggccgt agtaattctg attgctgcag cgggtggtgt
      421 cgcgctgtta acgacaaaag gtaaagctac cgttgctttt gcccgtgaag cgcgtaccga
      481 agtccgtaag gtcatttggc cgactcgcca ggaaacattg cacaccacgc tgattgtggc
      541 tgcggttacc gcagtaatgt cactgatcct gtggggactg gatggtattc tggttcgcct
      601 ggtatccttt atcactggcc tgaggttctg agatgtctga agctcctaaa aagcgctggt
      661 acgtcgttca ggcgttttcc ggttttgaag gccgcgtagc aacgtcgctg cgtgagcata
      721 tcaaattaca caacatggaa gatttgtttg gtgaagtcat ggtaccaacc gaagaagtgg
      781 ttgaaatccg tggcggtcag cgtcgcaaaa gcgaacgtaa attcttccct ggctacgtcc
      841 tcgttcagat ggtgatgaac gacgcgagct ggcacctggt gcgcagcgta ccgcgagtga
      901 tgggcttcat cggcggtact tccgatcgtc ctgcgccaat cagcgataaa gaagtcgatg
      961 cgattatgaa ccgcctgcag caggttggtg ataagccgcg tccgaaaacg ctgtttgaac
     1021 cgggtgaaat ggtccgtgtt aatgatggtc cgttcgctga cttcaacggt gttgttgaag
     1081 aagtggatta cgagaaatct cgtctgaaag tgtctgtttc tatcttcggt cgtgcgaccc
     1141 cggtagagct ggacttcagc caggttgaaa aagcctaacc cagcgatcaa aaaagcggcg
     1201 atttaatcgt tgcacaaggc gcgagattgg aatacaattt cgcgcctttt atttttatgg
     1261 gccttgcccg taaaaacgat tttttatatc acggggagcc tctcagaggc gttattaccc
     1321 aacttgagga atttataatg gctaagaaag tacaagccta tgtcaagctg caggttgcag
     1381 ctggtatggc taacccgagt ccgccagtag gtccggctct gggtcagcag ggcgtaaaca
     1441 tcatggaatt ctgcaaagcg ttcaacgcaa aaactgattc catcgaaaaa ggtctgccga
     1501 ttccggtagt aatcaccgtt tacgctgacc gttctttcac tttcgttacc aagaccccgc
     1561 cggcagcagt tctgctgaaa aaagcggctg gtatcaagtc tggtgccggt aagccgaaca
     1621 aagacaaagt gggtaaaatt tcccgcgctc agctgcagga aatcgcgcag accaaagctg
     1681 ccgacatgac tggtgccgac attgaagcga tgactcgctc catcgaaggt actgcacgtt
     1741 ccatgggcct ggtagtggag gactaagaaa tggctaaact gaccaagcgc atgcgtgtta
     1801 tccgcgagaa agttgatgca accaaacagt acgacatcaa cgaagctatc gcactgctga
     1861 aagagctggc gactgctaaa ttcgtagaaa gcgtggacgt agctgttaac ctcggcatcg
     1921 acgctcgtaa atctgaccag aacgtacgtg gtgcaactgt actgccgcac ggtactggcc
     1981 gttccgttcg cgtagccgta tttacccaag gtgcaaacgc tgaagctgct aaagctgcag
     2041 gcgcagaact ggtaggtatg gaagatctgg ctgaccagat caagaaaggc gaaatgaact
     2101 ttgacgttgt tattgcttct ccggatgcaa tgcgcgttgt tggccagctg ggccaggttc
     2161 tgggtccgcg cggcctgatg ccaaacccga aagtgggtac tgtaacaccg aacgttgctg
     2221 aagcggttaa aaacgctaaa gctggccagg ttcgttaccg taacgacaaa aacggcatca
     2281 tccacaccac catcggtaaa gtggactttg acgctgacaa actgaaagaa aacctggaag
     2341 ctctgctggt tgcgctgaaa aaagcaaaac cgactcaggc gaaaggcgtg tacatcaaga
     2401 aagttagcat ctccaccacc atgggtgcag gtgttgcagt tgaccaggct ggcctgagcg
     2461 cttctgtaaa ctaatgcctt tacgtgggcg gtgattttgt ctacaatctt acccccacgt
     2521 ataatgctta atgcagacgt atatccgaga tattcgggtt gtggcaaggc ggcaactgag
     2581 tgagtcgcca agagcatagc taactatgtg actggtgcga atgaaggaag ccaacgccgc
     2641 cacaagttga atagcgacgg atagaaaaga tttgttcgtt ggagcttggc ctatccaggc
     2701 ctccgtcgaa gaccgcagga gtttcgcaag aaacttaatc ccctgcgtag acggtgacag
     2761 aacgctaaga ttattctttt atattctggc ttgtttctgc tcaccgtaat taagacgctc
     2821 tctccgtttg gaggagtgaa gtgagttcca gagattttct ctggcaaaca tccaggagca
     2881 aagctaatgg ctttaaatct tcaagacaaa caagcgattg ttgctgaagt cagcgaagta
     2941 gccaaaggcg cgctgtctgc agtagttgcg gattcccgtg gcgtaactgt agataaaatg
     3001 actgaactgc gtaaagcagg tcgcgaagct ggcgtataca tgcgtgttgt tcgtaacacc
     3061 ctgctgcgcc gtgctgttga aggtactccg ttcgagtgcc tgaaagacgc gtttgttggt
     3121 ccgaccctga ttgcatactc tatggaacac ccgggcgctg ctgctcgtct gttcaaagag
     3181 ttcgcgaaag cgaatgcaaa atttgaggtc aaagccgctg cctttgaagg tgagctgatc
     3241 ccggcgtctc agatcgaccg cctggcaact ctgccgacct acgaagaagc aattgcacgc
     3301 ctgatggcaa ccatgaaaga agcttcggct ggcaaactgg ttcgtactct ggctgctgta
     3361 cgcgatgcga aagaagctgc ttaatcgcag ttatcttttt aacgcattcg cttacgtata
     3421 aacttattct gatattcagg aacaatttaa atgtctatca ctaaagatca aatcattgaa
     3481 gcagttgcag ctatgtctgt aatggacgtt gtagaactga tctctgcaat ggaagaaaaa
     3541 ttcggtgttt ccgctgctgc tgctgtagct gtagctgctg gcccggttga agctgctgaa
     3601 gaaaaaactg aattcgacgt aattctgaaa gctgctggcg ctaacaaagt tgctgttatc
     3661 aaagcagtac gtggcgcaac tggcctgggt ctgaaagaag ctaaagacct ggtagaatct
     3721 gcaccggctg ctctgaaaga aggcgtgagc aaagacgacg cagaagcact gaaaaaagct
     3781 ctggaagaag ctggcgctga agttgaagtt aaataagcca acccttccgg ttgcagcctg
     3841 agaaatcagg ctgatggctg gtgacttttt agtcaccagc ctttttgcgc tgtaaggcgc
     3901 cagtagcgtt tcacactgtt tgactactgc tgtgcctttc aatgcttgtt tctatcgacg
     3961 acttaatata ctgcgacagg acgtccgttc tgtgtaaatc gcaatgaaat ggtttaagcg
     4021 tgatagcaac aggcattgcg gaaagtgttc cattttccgg tcaacaaaat agtgttgcac
     4081 aaactgtccg ctcaatggac agatgggtcg acttgtcagc gagctgagga accctatggt
     4141 ttactcctat accgagaaaa aacgtattcg taaggatttt ggtaaacgtc cacaagttct
     4201 ggatgtacct tatctccttt ctatccagct tgactcgttt cagaaattta tcgagcaaga
     4261 tcctgaaggg cagtatggtc tggaagcagc tttccgttcc gtattcccga ttcagagcta
     4321 cagcggtaat tccgagctgc aatacgtcag ctaccgcctt ggcgaaccgg tgtttgacgt
     4381 ccaggaatgt caaatccgtg gcgtgaccta ttccgcaccg ctgcgcgtta aactgcgtct
     4441 ggtgatctat gagcgcgaag cgccggaagg caccgtaaaa gacattaaag aacaagaagt
     4501 ctacatgggc gaaattccgc tcatgacaga caacggtacc tttgttatca acggtactga
     4561 gcgtgttatc gtttcccagc tgcaccgtag tccgggcgtc ttctttgact ccgacaaagg
     4621 taaaacccac tcttcgggta aagtgctgta taacgcgcgc atcatccctt accgtggttc
     4681 ctggctggac ttcgaattcg atccgaagga caacctgttc gtacgtatcg accgtcgccg
     4741 taaactgcct gcgaccatca ttctgcgcgc cctgaactac accacagagc agatcctcga
     4801 cctgttcttt gaaaaagtta tctttgaaat ccgtgataac aagctgcaga tggaactggt
     4861 gccggaacgc ctgcgtggtg aaaccgcatc ttttgacatc gaagctaacg gtaaagtgta
     4921 cgtagaaaaa ggccgccgta tcactgcgcg ccacattcgc cagctggaaa aagacgacgt
     4981 caaacttatc gaagtcccgg ttgagtacat cgcaggtaaa gtggttgcta aagactatat
     5041 tgatgagtct accggcgagc tgatctgcgc agcgaacatg gagctgagcc tggatctgct
     5101 ggctaagctg agccagtctg gtcacaagcg tatcgaaacg ctgttcacca acgatctgga
     5161 tcacggccca tatatctctg aaaccttacg tgtcgaccca actaacgacc gtctgagcgc
     5221 actggtagaa atctaccgca tgatgcgccc tggcgagccg ccgactcgtg aagcagctga
     5281 aagcctgttc gagaacctgt tcttctccga agaccgttat gacttgtctg cggttggtcg
     5341 tatgaagttc aaccgttctc tgctgcgcga agaaatcgaa ggttccggta tcctgagcaa
     5401 agacgacatc attgatgtta tgaaaaagct catcgatatc cgtaacggta aaggcgaagt
     5461 cgatgatatc gaccacctcg gcaaccgtcg tatccgttcc gttggcgaaa tggcggaaaa
     5521 ccagttccgc gttggcttgg tacgtgtaga gcgtgcggtg aaagagcgtc tgtctctggg
     5581 cgatctggat accctgatgc ctcaggatat gatcaacgcc aagccgattt ccgcagcagt
     5641 gaaagagttc ttcggttcca gccagctgtc tcagtttatg gaccagaaca acccgctgtc
     5701 tgagattacg cacaaacgtc gtatctccgc actcggccca ggcggtctga cccgtgaacg
     5761 tgcaggcttc gaagttcgag acgtacaccc gactcactac ggtcgcgtat gtccaatcga
     5821 aacccctgaa ggtccgaaca tcggtctgat caactctctg tccgtgtacg cacagactaa
     5881 cgaatacggc ttccttgaga ctccgtatcg taaagtgacc gacggtgttg taactgacga
     5941 aattcactac ctgtctgcta tcgaagaagg caactacgtt atcgcccagg cgaactccaa
     6001 cctggatgaa gaaggccact tcgtagaaga cctggtaact tgccgtagca aaggcgaatc
     6061 cagcttgttc agccgcgacc aggttgacta catggacgta tccacccagc aggtggtatc
     6121 cgtcggtgcg tccctgatcc cgttcctgga acacgatgac gccaaccgtg cattgatggg
     6181 tgcgaacatg caacgtcagg ccgttccgac tctgcgcgct gataagccgc tggttggtac
     6241 tggtatggaa cgtgctgttg ccgttgactc cggtgtaact gcggtagcta aacgtggtgg
     6301 tgtcgttcag tacgtggatg cttcccgtat cgttatcaaa gttaacgaag acgagatgta
     6361 tccgggtgaa gcaggtatcg acatctacaa cctgaccaaa tacacccgtt ctaaccagaa
     6421 cacctgtatc aaccagatgc cgtgtgtgtc tctgggtgaa ccggttgaac gtggcgacgt
     6481 gctggcagac ggtccgtcca ccgacctcgg tgaactggcg cttggtcaga acatgcgcgt
     6541 agcgttcatg ccgtggaatg gttacaactt cgaagactcc atcctcgtat ccgagcgtgt
     6601 tgttcaggaa gaccgtttca ccaccatcca cattcaggaa ctggcgtgtg tgtcccgtga
     6661 caccaagctg gggccggaag agatcaccgc tgacatcccg aacgtgggtg aagctgcgct
     6721 ctccaaacta gatgaatccg gtatcgttta cattggtgcg gaagtgaccg gtggcgacat
     6781 tctggttggt aaggtaacgc cgaaaggtga aactcagctg accccagaag aaaaactgct
     6841 gcgtgcgatc ttcggtgaga aagcctctga cgttaaagac tcttctctgc gcgtaccaaa
     6901 cggtgtatcc ggtacggtta tcgacgttca ggtctttact cgcgatggcg tagaaaaaga
     6961 caaacgtgcg ctggaaatcg aagaaatgca gctcaaacag gcgaagaaag acctgtctga
     7021 agaactgcag atcctcgaag cgggtctgtt cagccgtatc cgtgctgtgc tggtagccgg
     7081 tggcgttgaa gctgagaagc tcgacaaact gccgcgcgat cgctggctgg agctgggcct
     7141 gacagacgaa gagaaacaaa atcagctgga acagctggct gagcagtatg acgaactgaa
     7201 acacgagttc gagaagaaac tcgaagcgaa acgccgcaaa atcacccagg gcgacgatct
     7261 ggcaccgggc gtgctgaaga ttgttaaggt atatctggcg gttaaacgcc gtatccagcc
     7321 tggtgacaag atggcaggtc gtcacggtaa caagggtgta atttctaaga tcaacccgat
     7381 cgaagatatg ccttacgatg aaaacggtac gccggtagac atcgtactga acccgctggg
     7441 cgtaccgtct cgtatgaaca tcggtcagat cctcgaaacc cacctgggta tggctgcgaa
     7501 aggtatcggc gacaagatca acgccatgct gaaacagcag caagaagtcg cgaaactgcg
     7561 cgaattcatc cagcgtgcgt acgatctggg cgctgacgtt cgtcagaaag ttgacctgag
     7621 taccttcagc gatgaagaag ttatgcgtct ggctgaaaac ctgcgcaaag gtatgccaat
     7681 cgcaacgccg gtgttcgacg gtgcgaaaga agcagaaatt aaagagctgc tgaaacttgg
     7741 cgacctgccg acttccggtc agatccgcct gtacgatggt cgcactggtg aacagttcga
     7801 gcgtccggta accgttggtt acatgtacat gctgaaactg aaccacctgg tcgacgacaa
     7861 gatgcacgcg cgttccaccg gttcttacag cctggttact cagcagccgc tgggtggtaa
     7921 ggcacagttc ggtggtcagc gtttcgggga gatggaagtg tgggcgctgg aagcatacgg
     7981 cgcagcatac accctgcagg aaatgctcac cgttaagtct gatgacgtga acggtcgtac
     8041 caagatgtat aaaaacatcg tggacggcaa ccatcagatg gagccgggca tgccagaatc
     8101 cttcaacgta ttgttgaaag agattcgttc gctgggtatc aacatcgaac tggaagacga
     8161 gtaattctcg ctcaaacagg tcactgctgt cgggttaaaa cccggcagcg gattgtgcta
     8221 actccgacgg gagcaaatcc gtgaaagatt tattaaagtt tctgaaagcg cagactaaaa
     8281 ccgaagagtt tgatgcgatc aaaattgctc tggcttcgcc agacatgatc cgttcatggt
     8341 ctttcggtga agttaaaaag ccggaaacca tcaactaccg tacgttcaaa ccagaacgtg
     8401 acggcctttt ctgcgcccgt atctttgggc cggtaaaaga ttacgagtgc ctgtgcggta
     8461 agtacaagcg cctgaaacac cgtggcgtca tctgtgagaa gtgcggcgtt gaagtgaccc
     8521 agactaaagt acgccgtgag cgtatgggcc acatcgaact ggcttccccg actgcgcaca
     8581 tctggttcct gaaatcgctg ccgtcccgta tcggtctgct gctcgatatg ccgctgcgcg
     8641 atatcgaacg cgtactgtac tttgaatcct atgtggttat cgaaggcggt atgaccaacc
     8701 tggaacgtca gcagatcctg actgaagagc agtatctgga cgcgctggaa gagttcggtg
     8761 acgaattcga cgcgaagatg ggtgcggaag caatccaggc tctgctgaag agcatggatc
     8821 tggagcaaga gtgcgaacag ctgcgcgaag agctgaacga aaccaactcc gaaaccaagc
     8881 gtaaaaagct gaccaagcgt atcaaactgc tggaagcgtt cgttcagtct ggtaacaaac
     8941 cagagtggat gatcctgacc gttctgccgg tactgccgcc agatctgcgt ccgctggttc
     9001 cgctggatgg tggtcgtttc gcgacttctg acctgaacga tctgtatcgt cgcgtcatta
     9061 accgtaacaa ccgtctgaaa cgtctgctgg atctggctgc gccggacatc atcgtacgta
     9121 acgaaaaacg tatgctgcag gaagcggtag acgccctgct ggataacggt cgtcgcggtc
     9181 gtgcgatcac cggttctaac aagcgtcctc tgaaatcttt ggccgacatg atcaaaggta
     9241 aacagggtcg tttccgtcag aacctgctcg gtaagcgtgt tgactactcc ggtcgttctg
     9301 taatcaccgt aggtccatac ctgcgtctgc atcagtgcgg tctgccgaag aaaatggcgc
     9361 tggagctgtt caaaccgttc atctacggca agctggaact gcgtggtctt gctaccacca
     9421 ttaaagctgc gaagaaaatg gttgagcgcg aagaagctgt cgtttgggat atcctggacg
     9481 aagttatccg cgaacacccg gtactgctga accgtgcacc gactctgcac cgtctgggta
     9541 tccaggcatt tgaaccggta ctgatcgaag gtaaagctat ccagctgcac ccgctggttt
     9601 gtgcggcata taacgccgac ttcgatggtg accagatggc tgttcacgta ccgctgacgc
     9661 tggaagccca gctggaagcg cgtgcgctga tgatgtctac caacaacatc ctgtccccgg
     9721 cgaacggcga accaatcatc gttccgtctc aggacgttgt tctgggtctg tactatatga
     9781 cccgtgactg tgttaacgcc aaaggcgaag gcatggtgct gactggcccg aaagaagcag
     9841 aacgtctgta tcgctctggt ctggcttctc tgcatgcgcg cgttaaagtg cgtatcaccg
     9901 agtatgaaaa agatgcaaac ggtgaattag tagcgaaaac cagcctgaaa gacacgactg
     9961 ttggccgtgc cattctgtgg atgattgtac cgaaaggtct gccttactcc atcgtcaacc
    10021 aggcgctggg taaaaaagca atctccaaaa tgctgaacac ctgctaccgc attctcggtc
    10081 tgaaaccgac cgttattttt gcggaccaga tcatgtacac cggcttcgcc tatgcagcgc
    10141 gttctggtgc atctgttggc atcgatgaca tggtcatccc ggagaagaaa cacgaaatca
    10201 tctccgaggc agaagcagaa gttgctgaaa ttcaggagca gttccagtct ggtctggtaa
    10261 ctgcgggcga acgctacaac aaagttatcg atatctgggc tgcggcgaac gatcgtgtat
    10321 ccaaagcgat gatggataac ctgcaaactg aaaccgtgat taaccgtgac ggtcaggaag
    10381 agaagcaggt ttccttcaac agcatctaca tgatggccga ctccggtgcg cgtggttctg
    10441 cggcacagat tcgtcagctt gctggtatgc gtggtctgat ggcgaagccg gatggctcca
    10501 tcatcgaaac gccaatcacc gcgaacttcc gtgaaggtct gaacgtactc cagtacttca
    10561 tctccaccca cggtgctcgt aaaggtctgg cggataccgc actgaaaact gcaaactccg
    10621 gttacctgac tcgtcgtctg gttgacgtgg cgcaggacct ggtggttacc gaagacgatt
    10681 gtggtaccca tgaaggtatc atgatgactc cggttatcga aggtggtgat gttaaagagc
    10741 cgctgcgcga tcgcgtactg ggtcgtgtaa ctgctgaaga cgttctgaag ccgggtactg
    10801 ctgatatcct cgttccgcgc aacacgctgc tgcacgaaca gtggtgtgac ctgctggaag
    10861 agaactctgt cgacgcggtt aaagtacgtt ctgttgtatc ttgtgacacc gactttggtg
    10921 tatgtgcgca ctgctacggt cgtgacctgg cgcgtggcca catcatcaac aagggtgaag
    10981 caatcggtgt tatcgcggca cagtccatcg gtgaaccggg tacacagctg accatgcgta
    11041 cgttccacat cggtggtgcg gcatctcgtg cggctgctga atccagcatc caggtgaaaa
    11101 acaaaggtag catcaagctc agcaacgtga agtcggttgt gaactccagc ggtaaactgg
    11161 ttatcacttc ccgtaatact gaactgaaac tgatcgacga attcggtcgt accaaagaaa
    11221 gctacaaagt accttacggt gcggtactgg cgaaaggcga tggcgaacag gttgctggcg
    11281 gcgaaaccgt tgcaaactgg gacccgcaca ccatgccggt tatcaccgaa gtaagcggtt
    11341 ttgtacgctt tactgacatg atcgacggtc agaccattac tcgtcagaca gacgaattga
    11401 ccggtctgtc ttcgctggtg gttctggatt ccgcagaacg taccgcaggt ggtaaagatc
    11461 tgcgtccggc actgaaaatc gttgatgctc agggtaacga cgttctgatt ccgggtaccg
    11521 atatgcctgc gcagtacttc ctgccgggta aagcgattgt tcagctggaa gatggcgtac
    11581 agatcagctc tggtgacacc ctggcgcgta ttccgcagga atccggcggt accaaggaca
    11641 tcaccggtgg tctgccgcgc gttgcggacc tgttcgaagc acgtcgtccg aaagagccgg
    11701 caatcctggc tgaaatcagc ggtatcgttt ccttcggtaa agaaaccaaa ggtaaacgtc
    11761 gtcttgttat caccccggta gacggtagcg atccgtacga agagatgatt ccgaaatggc
    11821 gtcagctcaa cgtgttcgaa ggtgaacgtg tagaacgtgg tgacgtaatt tccgacggtc
    11881 cggaagcgcc gcacgacatt ctgcgtctgc gtggtgttca tgctgttact cgttacatcg
    11941 ttaacgaagt acaggacgta taccgtctgc agggcgttaa gattaacgat aaacacatcg
    12001 aagttatcgt tcgtcagatg ctgcgtaaag ctaccatcgt taacgcgggc agctccgact
    12061 tcctggaagg cgaacaggtt gaatactctc gcgtcaagat cgcaaaccgc gaactggaag
    12121 cgaacggcaa agtgggtgca acttactccc gcgatctgct gggtatcacc aaagcgtctc
    12181 tggcaaccga gtccttcatc tccgcggcat cgttccagga gaccactcgc gtgctgaccg
    12241 aagcagccgt tgcgggcaaa cgcgacgaac tgcgcggcct gaaagagaac gttatcgtgg
    12301 gtcgtctgat cccggcaggt accggttacg cgtaccacca ggatcgtatg cgtcgccgtg
    12361 ctgcgggtga agctccggct gcaccgcagg tgactgcaga agacgcatct gccagcctgg
    12421 cagaactgct gaacgcaggt ctgggcggtt ctgataacga gtaatcgtta atccgcaaat
    12481 aacgtaaaaa cccgcttcgg cgggtttttt tatgggggga gtttagggaa agagcatttg
    12541 tcagaatatt taaggaattt ctgaatactc ataatcaatg tagagatgac taatatcctg
    12601 aaactgactg aactaattga gtcaaactcg gcaaggattc gatactattc ctgtgtaact
    12661 ttcttaagga acgagaatga aacaggaagt ggaaaagtgg cgaccttttg gacatccgga
    12721 tggtgatatt cgtgatttat catttcttga tgctcatcag gctgtctacg ttcagcatca
    12781 tgagggcaaa gagcctttag agtatcgctt ttgggttacc tactctcttc actgcttcac
    12841 aaaagattat gaacatcaga cgaacgaaga aaaacaatcg ttaatgtacc acgcgcctaa
    12901 agaatctcgt cccttctgcc agcaccgtta taacttagcg cgcacacact taaaaagaac
    12961 tattttggcg ctgccagaaa gcaacgttat tcatgccggg tatggtagct atgccgtgat
    13021 tgaggtggac ttagacggag gagataaggc attttacttt gttgcgttca gggctttcag
    13081 ggaaaagaaa aaactccgtt tgcatgtaac tagcgcttat cccatttctg aaaaacagaa
    13141 aggtaaatca gtgaaatttt tcaccattgc ctacaactta ttgagaaata agcagcttcc
    13201 tcagccctca aaataacaaa acccacctta aggtgggttt cgccagagaa ttatctctgg
    13261 tattcagaac gccattaccg gactttgcct tgaccttgcg ataatcgcag gttgcgggat
    13321 gtctgaattt cttcagtctg ctgcatcctg gaagatgaga acatgtgttc ttattttcgt
    13381 ctctatcata gttgagtatt tactctctta caatcagatc tctttcattg ctcaacaggc
    13441 gatggcttca gactttgcat tacggaattt ttaagaaagg cagggcgaaa cgaggaagaa
    13501 gcttttcgcc ctggacaaca ttcctgctga cggcactacc ataaaaaaac acaacgcttt
    13561 caacaacctt gcgtttttca tcttccgtag cggctcggaa taaatttacg ttcttacatt
    13621 ccgtctcata gtctttgcga ggcccgtccc agatagctgt cccagtcttt tcataccggc
    13681 tgcaaaccct gagcggttaa cgcggcagca accgcttccg gtctgcgatc gtcgtgcggt
    13741 gagaactgtt ccaactcggg gtgattatcg gcatagccac ctggctgcgt tttcgagaag
    13801 gcgctgacgt tattgatcgc cagcggaata acgcgatcgc gaaaccacgg tgattcccgc
    13861 gtggagagtg acagttcaat ctccggtgca agcagtcgga aggcgcagat ggtttgcact
    13921 aactggcgtt catccataat cgacgcaggc tcaatgccgc cagtacacgg gcgcaggcgc
    13981 ggaaaggaga cagagtaacg gctttgccag taatgctgtt gcagccatag caaatgttcg
    14041 gcaaccatat agcagtcaac gcgccagttg tcggaaaggc caattagcgc gccgaggcct
    14101 atcttatcaa tccccgcacg ccccagccga tccggcgttt ccagccgcca gaagaagtcc
    14161 tgttttttgc ctttcagatg atggcgggca taagtcgcct cgtgatatgt ctcctgataa
    14221 accatcacgc catccagacc aagctgcttt aactcggcgt attccgtctt cgccagcggt
    14281 tgcacttcca tttgtagtga agagaactgt tcacgcaggg cggggagatg acgacgaaag
    14341 taatccatcc ccactttcgc ctgatgttca ccagtgacta atagcagatg ttcaaagccc
    14401 atctcccgta tagcggcgct ttccctggca atatccgctt catccagcgt tttgcgcttg
    14461 atgcgattac tcatggaaaa tccgcagtac gtgcagtcgt tagcgcaaag attggaaaga
    14521 taaagcggga cgtagaaact aactgtgttg ccaaatcgct gacgggtcag acgctgcgcc
    14581 cgttgggcca gttgttccag atagccactg gcggctggcg ataacagcgc catcatatcg
    14641 tcgcgggtga attgcgaggc atttagcgcc cgctctacgt caacagccgt tttgccgttg
    14701 atacgcaggc ggatgtcatc ccagtccagt tgtcgccagc gatcgctgaa ggttttcatg
    14761 ccgatgcctc cagaaatcca gtcagcgggc tggtggcatg agcaaaatga ctgcggctgc
    14821 ccggtccgga ctgacgtgcc agcaggcctg cttctaccgc cagacgaaat gccttcgcca
    14881 tgttgacggg atcgtccgct acggcaatcg ccgtattcac taacaccgcg tcggccccca
    14941 tttccagggc ctgcgctgca tggctgggaa cgccgatgcc agcatcgaca accaccggaa
    15001 ctgtggcctg ctggataata atctccagca tggcacgggt ttccagtccc tgattcgagc
    15061 caatcggcgc gccgagcggc atcaccgctg cacagccgac ttcttccaga cgtttacaca
    15121 ataccggatc ggccccgcag taaggcagca cgacaaatcc ctgttgtacc agcatttcgg
    15181 cggctttcag agtttcgatg ggatcgggca acagccagcg ggcgtcaggg ggaatctcta
    15241 attttaacca gtttgtgcct aacgcttcac gtgccagatg ggcggcgaaa atggcttctt
    15301 ccgctgtttt cgccccggaa gtatttggca gcagggtcac acccgccgcg ataagcggtt
    15361 cgaggatagc gtcgttgtgc tggcgcaagt cgacacgttt catcgccagt gtcaccagct
    15421 ggctgccgga agcgcggatc gcctccacca tcagttgtga agaagcgaat ttccctgtgc
    15481 cggtaaacag atgtgaatca aacgttttgt ccgcaatacg taacatctca accccctgca
    15541 ataacctgaa aaagcaggat ctggtcgcca tcctgcagga tatgttgcgt ccactgctca
    15601 cgcgggacga tttgctgatt aatcgccaga gccgcgcccg cttgtcgttg gtcgagttgc
    15661 tccagtagtt cgtgaacagt ttgcccggtg gcgcactgca tcggttgatc gttaaacagg
    15721 atctgcattg cttcctccgc ataccgggca accactggcg cggcgcaacg ccaggctgcg
    15781 ccactggctc gatttaccgt cgaacagtcg gagttctccc gcaggtgtct ctataccgct
    15841 taataactta atggcttcca gtgcctgcaa agtgcccata accccgacca ccgggccaac
    15901 cacgcccgcc gtgcggcagt tgcgttctgg ctcctggtta tctggccaca ggcagcggta
    15961 acacccctgc tcccagggcg gcgtcagtac catcaactga ccgccaaatc cgaccgcgct
    16021 ggcggtgata agcggcgtgt tgagtaccac gcaggcggca ttaatctcct ggcgagtcgc
    16081 catattgtcg gtacagtcga gcaccacatc ggcccgtgca accgcatctt ttaacgcctc
    16141 acccgttaac cgttgttgta atgctgtcag ttgaatgtcg ggattcaact gtgtcagtcg
    16201 ctgttggctg acctgcgatt tcgggctgtt gatatcttca gtggtaaaga gaatttgtcg
    16261 ttacagattg cttaaatgca catcgtcgtc atctgccagt accagcgtcc cgacgccagc
    16321 gcccgccagg tatagcgcag caggtgtacc cagcccgcca agaccgataa tcagcacctg
    16381 gctgtcgagc agtttttgct gcccgtcaag agcgatatca tcgagcagga tttggcggct
    16441 ataacgcata aaatcacggt cattcatcgc caactcctgc aatttccagc aactgtgccg
    16501 ttgccaaacg ccagtctgcg gcttgagtaa tggcgctgat gacggcgata ctgccgacac
    16561 ccgttgctat caccgcaggc gcgcgtgcca gactgatacc gccaatcgcc acggtgggat
    16621 aatccgccag tcgctcaaca tgccgtgcca gctgttccag cccctgcggt gcagaaggca
    16681 tctgtttggt ttgcgtcggg aacacatgtc ccagcgcgat ataagagggg cgtgctgcca
    16741 gcgcgacgtc gatttccata tcgtcatgtg tcgaaacacc cagccgcagg cctgccgcgc
    16801 ggatggcatt gagatcggtg gcttgcaaat cttcctgccc caaatggacg ccatacgcct
    16861 gatgcttgat cgcgagccgc cagtaatcgt tgataaacaa tcgcgcgtta tagcggcggc
    16921 ccagcgcaat tgccgccacg acatcggctt ccacctcttc atcgcgccga tctttgatgc
    16981 gtagctggag agtacgtacg cctgcatcca acagacgttc gatccactgt acgctgtcca
    17041 ccactgggta cagtcctaaa cgaaaaggta caggaggaaa atcaggctga tacatcacgc
    17101 ttcctcctta cgcaggtaga tttctccgcc tctggcacgg aagttctccg acatatccgc
    17161 cattcccatt tcaatagttt gcgtggcggc gtaatcacgc acttcctggc tgattttcat
    17221 cgagcagaat ttcggcccac acatggagca aaaatgggcg actttacctg actcttgcgg
    17281 cagggtttca tcgtgataag cgcgggcggt aaacgggtcg agggccagat taaactggtc
    17341 ttcccagcga aattcgaagc gggctttcga catggcgtta tcgcgaattt gcgcgcccgg
    17401 atgccctttc gccaggtcag cggcgtgggc ggcaatctta taggtgataa gcccctgctt
    17461 aacatcttct ttattaggca gacccagatg ctcttttggt gttacgtaac agagcatcgc
    17521 gcagccaaac cagccaatca tcgccgcacc aatccccgac gtgaagtggt catagcccgg
    17581 cgcaatatcg gtagttagcg gccccagagt gtaaaacggc gcttcgtggc agtgctctaa
    17641 ctcctcggtc atattgcggc ggatcatctg catcggcacg tggcctgggc cttcaatcat
    17701 cacctgcacg tcatattccc aggcaatttt ggtcagttcg cccagcgtat gcagctcggc
    17761 aaactgcgct tcatcgttgg cgtcctgaat agaaccgggg cgcagaccgt cgcccagcga
    17821 cagcgaaacg tcataagcgg cacagatttc acaaatttcg cggaagtgtt gatagaggaa
    17881 attttcctga tgatgggaga ggcaccattt cgccataatc gaaccgccgc gagagacgat
    17941 accggtcagg cgtttcgcgg tcatcggcac atagcgcaac agtacgcccg catggatagt
    18001 gaagtaatcc acaccttgct cggcctgttc cagcagcgtg tcgcggaacg cttcccaggt
    18061 aagatcttcg gcgatcccgt taaccttctc cagcgcctgg tagatcggca ctgtaccgat
    18121 cggcaccgga ctgttacgca aaatccactc gcgggtttcg tgaatatagc gaccggtgga
    18181 gagatccatc accgtatccg ctccccagcg cgtggaccat accagctttt ccacttcttc
    18241 ttcgatggaa gaggtgaccg ccgagttgcc gatattggcg ttaactttta ccaggaagtt
    18301 acggccaata atcatcggct ccgattccgg atgattaatg ttggccggga taatcgcacg
    18361 tccggcagca acttcatcac ggacaaattc cgcagtgata ttttccggca gacgtgcgcc
    18421 aaagctcatt cccggatgct ggtggcgtaa aacttcgcta cgtatgcgct cgcggcccat
    18481 attctcgcgg atggcgatga attccatttc cggagtgatg atgccctggc gggcgtagtg
    18541 cagttgggtg acacggcgtc ctgctttggc gcgttttggt gttagtacgc cgctaaaacg
    18601 cagttcgtcg aggccatcat ctgccagccg cgctttagtg taatcggaac tgcgcacggt
    18661 aagttcttcg gtatcgccgc gcgcatcgat ccacggctgg cgtagttttg ccagcccttg
    18721 ctgcacgtta atggcgatct gcggatcgcc atatgggccg gaggtgtcgt agaccggaat
    18781 cgcttcgttt tcttcaaact gcggctgttc tttgctgccg ccgattagcg tcgggctaag
    18841 ctggatctca cgcatcggca cgcgaacgcc agagtgtgtg ccagtgaggt aaatgcgttt
    18901 tgagttggga aaggcggtgc cttccagggt gtcgataaaa tgttgggccc gggcgcgttg
    18961 ttcgcggcgg gtcagttttg ttgcagacat agctcattcc aaaaagttaa ggacgtggct
    19021 tgtcagacga cggatgaagc aagagacgat cgccgcaaag gcgatgcgat agcagattaa
    19081 ctcttgttcc cttcgcaggt attagcctga tcaggttccg cggatcccga ataaacggtc
    19141 tcagccagtt aaggcactcc gacaagaaat tagcccccac aaacggggcg ttgaatgtaa
    19201 attacgcgtt aacagcgcag aactcaagca ggatgtttga cgcgggcggc gtcaagcacc
    19261 agcagaatca gcttatcttc cagcacaaag cgcgcttcca gcgcctcgcc gatgtcagat
    19321 aaaacctttt gaaactcaag gtaattatca tgatcgatgg cggtttccag gctggaatcg
    19381 tagtaatcca taatctgttg ggtattggct tcgagttgcg gccaaatctt cgcggcgcgc
    19441 gcgagttgcc cgttgccttc cagcttatga agaatgcgct cataaatact gaaatgtccg
    19501 gcagacaagt aatcgaccag gctctgacaa aaatcatcaa gggctttttc gtttagcctc
    19561 atgtacgatt ctttgccagg cttaatgcca accagattgt agtaagccac gagcagatgc
    19621 ttacgtacat gtagccagcg atcaaccagt ttgttacttc ctctgacgcg ctccgtcagg
    19681 ttatcgagct ggttaagcat gattgactcc gcaagtttgt attcaaaaac tgctcagtga
    19741 gaaatgtaaa aaccatgtta aacatgccag tgatgcaaag gtagtgcaag agctatggat
    19801 cgtataattg aaaaattaga tcacggctgg tgggtcgtca gccatgaaca aaaattatgg
    19861 ttgccgaagg gagaattgcc atatggcgaa gcggcaaatt tcgatcttgt gggtcagcgc
    19921 gcactacaaa tcggcgaatg gcagggggaa cctgtttggt tagtacaaca gcagcggcgt
    19981 cacgatatgg ggtcggtacg tcaggtcatt gatctcgatg ttgtgctgtt tcaactggcc
    20041 ggacgaggcg tacaactggc ggagttttac cgatcgcata aatactgtgg ttactgcggg
    20101 catgaaatgt atccgagcaa aaccgaatgg gcgatgctgt gcagccattg ccgtgagcgt
    20161 tactacccgc aaatcgcccc ctgcattatt gttgccatcc gtcgcgatga ttcgatcctc
    20221 ctcgcccagc atacccgcca tcgtaacggt gtccatacag tacttgccgg attcgtcgaa
    20281 gtgggcgaaa ccctcgagca ggcagtcgcg cgggaagtga tggaagagag cggaattaaa
    20341 gttaaaaact tgcgttacgt gacttctcag ccgtggccgt ttcctcagtc tttaatgacc
    20401 gcgtttatgg cggaatatga cagcggcgac atcgtgatcg acccgaaaga attgctcgag
    20461 gcgaactggt atcgctatga cgatttgccg ttactcccgc cgcccggcac cgtagcgcgc
    20521 cgtctgatag aagatactgt ggcgatgtgt cgggcagagt atgagtgatg atacactgac
    20581 cgcctgacgc actaaggaac agccaaaatg accgaactta aaaacgatcg ttatctgcgg
    20641 gcgctgctgc gccagcccgt tgatgtcact ccagtatgga tgatgcgcca ggcgggtcgc
    20701 tatctaccgg aatataaagt cacgcgcgcc caggcgggcg attttatgtc gctgtgcaaa
    20761 aacgccgagc tggcgtgcga agtgactttg caaccgctgc gtcgctaccc gctggatgcg
    20821 gcgatcctct tttccgatat cctcaccgtg ccggacgcga tggggttagg gctctatttt
    20881 gaagccggag aaggtccgcg ttttacctcg ccagtcacct gcaaagccga cgtcgataag
    20941 ctgccaattc cggacccgga agatgagctg ggttacgtga tgaacgcggt gcgtaccatt
    21001 cgtcgcgaac tgaaaggcga agtgccgctg attggttttt ccggcagccc gtggacgctg
    21061 gcaacctaca tggtggaagg cggcagcagc aaagccttca ccgtgatcaa aaaaatgatg
    21121 tatgccgatc cgcaggcgct gcacgctcta ctcgataaac tggcgaaaag cgtcactttg
    21181 tatctgaatg cgcagattaa agccggtgct caggcagtga tgattttcga cacctggggc
    21241 ggtgtgctta ccgggcgcga ttatcaacag ttctcgctct attacatgca taaaattgtt
    21301 gatggtttac tgcgtgaaaa cgacggtcgc cgcgtaccgg tcacgctgtt taccaaaggc
    21361 ggcggacagt ggctggaagc gatggcagaa accggttgcg atgcgttggg cctcgactgg
    21421 acaacggata tcgccgatgc gcgccgccgt gtgggcaata aagtcgcgtt gcagggtaat
    21481 atggatccgt cgatgctgta cgcgccgcct gcccgcattg aagaagaagt agcgactata
    21541 cttgcaggtt tcggtcacgg cgaaggtcat gtctttaacc ttggtcacgg cattcatcag
    21601 gatgtgccgc cagaacatgc tggcgtgttc gtggaggcag tgcatcgact gtctgaacaa
    21661 tatcaccgct aaggagtgat tatggatctc gcgtcattac gcgctcaaca aatcgaactg
    21721 gcttcttctg tgatccgcga ggatcgactc gataaagatc caccggatct gatcgccgga
    21781 gccgatgtcg ggtttgagca gggcggagaa gtgacgcgag cggcgatggt gctgctgaaa
    21841 tatccctcgc ttgagctggt ggagtataaa gttgcccgca tcgccaccac catgccttac
    21901 attccaggtt ttctttcctt ccgcgaatat cctgcgctgc tggcagcgtg ggagatgctg
    21961 tcgcaaaagc cggatttagt gtttgtcgat ggtcatggga tctcgcatcc tcgccgtctt
    22021 ggcgtcgcca gccattttgg tttgatggtg gatgtgccaa cgatcggcgt ggcgaaaaaa
    22081 cggctctgcg gtaaattcga accgctctcc agcgaaccgg gcgcgctggc cccactgatg
    22141 gataaaggcg agcagctggc ctgggtctgg cgcagcaaag cgcgctgtaa cccgttgttt
    22201 atcgctaccg gccatcgggt cagcgtggac agcgcgctgg cgtgggtaca acgctgcatg
    22261 aaaggctatc gtctgccgga gccaacgcgc tgggcggacg cggtggcctc ggaacgtccg
    22321 gcgttcgtgc gctatacagc aaatcagccc taattcaggt aaactgcgga taatttccgt
    22381 atttgagaac ttaacatgtt acaaaaccca attcatctgc gtctggagcg cctggaaagc
    22441 tggcagcatg tcactttcat ggcttgctta tgcgaacgca tgtaccccaa ttacgccatg
    22501 ttctgccagc aaaccggttt tggtgatggg caaatttacc gtcgtattct cgatctcatc
    22561 tgggaaacgc tgaccgttaa agacgcaaaa gtaaatttcg acagccaact ggagaaattt
    22621 gaagaagcga ttccttcagc cgacgatttc gatctgtacg gcgtttatcc ggcaatcgat
    22681 gcctgcgtgg tgttaagtga actggtccat tcgcgtttga gtggtgaaac gctcgaacac
    22741 gcggtggaag tgagtaagac ctccatcacg accgttgcga tgctggaaat gactcaggtt
    22801 ggtcgcgaaa tgagcgatga agagcttaaa gaaaacccag ctgtagagca agaatgggac
    22861 attcagtggg aaatattccg acttttagct gagtgcgaag aacgcgatat cgagctgata
    22921 aaaggcctta gggcagacct gcgtgaggcg ggtgagagca atattggtat aatttttcag
    22981 caataagacc agaaaacgtg atttaacgcc tgatttgtcg tacttggagt cttccctttc
    23041 gccccccgtc tggtctacat ttggggggcg aaaaaaagtg gctatcggtg cgtgtatgca
    23101 ggagagtgct attctggcat ttccgtcgca ctcgatgctt agcaagcgat aaacacattg
    23161 taaggataac ttatgaacaa gactcaactg attgatgtaa ttgcagagaa agcagaactg
    23221 tccaaaaccc aggctaaagc tgctctggag tccactctgg ctgcaattac tgagtctctg
    23281 aaagaaggcg atgctgtaca actggttggt ttcggtacct tcaaagtgaa ccaccgcgct
    23341 gagcgtactg gccgcaaccc gcagaccggt aaagaaatca aaattgccgc agctaacgta
    23401 ccggcatttg tttctggcaa ggcactgaaa gacgcagtta agtaagattg cgtggcagtg
    23461 aacagtttta acgaaggggt ggtttcaccc cttttgtctt tctggcgtcg atcattgatg
    23521 ctggctggcg ctctgcttct cactgcctgt agtcataact cttcacttcc tccctttacc
    23581 gccagtggat ttgctgaaga ccagggcgcg gtacgcatct ggcgaaaaga cagcggcgat
    23641 aatgtgcatc tgcttgccgt gtttagcccg tggcgcagtg gcgataccac gacgcgagag
    23701 tatcgctggc agggcgataa cctcacgctc atcaatatca atgtttacag caaaccgccg
    23761 gtgaatattc gcgcgcgttt tgacgatcgc ggtgatctga gctttatgca acgtgaatcc
    23821 gatggggaaa agcagcagct ttctaacgac caaatcgatt tataccgtta tcgtgctgat
    23881 cagatccgcc agattagcga tgccttacgt caggggagag tcgtgctgcg ccaggggcgc
    23941 tggcatgcga tggaacagac cgtgaccacc tgcgaagggc aaaccattaa acctgattta
    24001 gattcgcagg cgatagcgca tatcgagcgc cgccagagcc gctcttctgt tgatgtcagc
    24061 gtggcatggc tggaagcgcc cgaaggttcg caattactgt tagtggcaaa ctctgatttc
    24121 tgtcgctggc aacccaacga gaaaacgttc tgatttacca gtggcccata cccatatgac
    24181 cgccaccacc gcagccgccg tagcccatgc ccattccggc tccgcgcgga atacccgctt
    24241 cagccatcgc gatatctcgt ttcacccgta actcatctaa cgactgacgc aaattctcca
    24301 tctctttggc gaccgcgtta attttgctgc tatccggtgg gttcgcggct aacagggcat
    24361 tgtattcata acgcttcgtc accagttgct gttgcagtgc gctgctttga gcgtaaaagt
    24421 cattatggat tttctgccac gctgtctgtt gttcgctggt caaaggcgcg gcattttgct
    24481 gccacatacc gtgtccgccg tgagcaaatg cagatgtcga tcccatcgcc attgctgaaa
    24541 gcgccatcat taccagggca attttcgtgt tccgtttcat ggttaatcct ccagtggttg
    24601 tcttacttcg ggtattgcat cttccgtgcc aacgatgaaa cgctgatatg acgggtaatc
    24661 tggcatgata aacgagtaaa aatgactcgc ctgctgcggg tagcgagtca tttttactca
    24721 ttgaaactta agcctttgtg ttacagcgca gggtaagcgc tgataaaaga tggcatgatt
    24781 tctgctgtca gaaagggatg agcaggcaaa gaagaagatg cgttttatgc aacgttctaa
    24841 agactcctta gctaaatggt taagcgcgat cctccccgtg gtcattgttg ggctggtagg
    24901 gttgtttgcg gtgacggtga ttcgcgatta tgggcgcgag actgccgccg ccagacaaac
    24961 gctgctggaa aaaggcagtg tacttattcg cgctcttgaa tccggctcgc gcgtcggcat
    25021 ggggatgcgc atgcatcatg cgcagcagca ggccttactg gaagaaatgg ccgggcagcc
    25081 tggagtacgt tggtttgcgg tcacggatga acaaggaaca atcgtgatgc atagcaactc
    25141 cggcatggtg ggaaaacagc tttattcccc gcaggaaatg cagcagttac atccgggaga
    25201 tgaagaagcg tggcggcgga tcgatagcgc agacggtgag cctgttctgg aaatttatcg
    25261 ccagtttcaa ccgatgtttg ctgctggaat gcaccggatg cgccatatgc agcagtatgc
    25321 cgcgacacca caagcaattt tcatcgcttt cgacgccagt aatattgtga gtgccgaaga
    25381 tcgtgagcag agaaacaccc tgattatcct cttcgccctg gcgacggtct tgctggcaag
    25441 cgtattgtca ttcttctggt atcgccgcta tctgcgctcg cgccagcttc tacaagatga
    25501 aatgaagcgc aaagagaagc tggtggcact ggggcatctg gcggcaggcg ttgcccacga
    25561 aatccgtaat ccactttcct caattaaagg gctggcgaaa tactttgccg aacgcgcgcc
    25621 agcaggggga gaagcgcatc aactggcgca ggtgatggcg aaagaagccg accgtttaaa
    25681 ccgcgtggta agcgagttgc tggaactggt taagccaacg catctggctt tgcaggcggt
    25741 ggatctcaac acgctgatta accactcatt acagctggta agccaggatg caaacagccg
    25801 ggagatccag ttacgcttta ccgccaacga cacattaccg gaaattcagg ccgatccgga
    25861 caggctgact caggtcctgt tgaatctcta tctcaatgct attcaggcga ttgttcagca
    25921 tggcgtgatt agcgtgacgg tcagcgaaag cggcgcgggc gtgaaaatca gcgttaccga
    25981 cagcggtaag ggaattgcgg cagatcagct tgaagccatc ttcactccgt acttcaccac
    26041 caaagccgaa ggcaccggat tggggctggc ggtcgtgcat aatattgttg aacaacacgg
    26101 tggtacaatt caggtcgcaa gccaggaggg aaaaggctca acgttcaccc tctggcttcc
    26161 ggtcaatatt acgcgtaagg acccacaagg atgacgcacg ataatatcga tattctggtg
    26221 gtggatgatg acattagcca ctgcactatt ttgcaggctt tactgcgcgg ctggggctat
    26281 aacgtcgcgc tggcgaacag cgggcgacag gcgctggagc aggtgcggga acaggttttt
    26341 gatcttgtgc tttgcgatgt gcgaatggcg gagatggacg gcatcgccac gctgaaagag
    26401 atcaaagcgt taaacccggc aattccggtg ctgattatga ctgcgtactc cagcgtcgag
    26461 acggcggtag aggcactgaa aactggggcg ctggattatc tcatcaagcc gctggatttc
    26521 gataacctac aggcgacgct ggaaaaggcg ctcgcgcata cgcacagtat tgatgctgaa
    26581 acacctgcgg tgactgccag ccagttcggt atggtcggta aaagcccggc gatgcaacac
    26641 ctgctcagtg aaatcgccct cgtcgcgcca tcggaagcca cagtgctgat ccacggcgat
    26701 tccggcaccg gtaaagagct ggtcgccagg gcgattcacg ccagtagcgc acgtagcgaa
    26761 aaaccgctgg taacgctcaa ctgtgcggca ctcaacgaat ccttgctgga atctgaattg
    26821 ttcggtcacg aaaaaggggc gtttactgga gccgataaac gccgggaagg gcgctttgtt
    26881 gaggcggacg gcggcacgct gtttctcgat gaaattggcg atatctcgcc gatgatgcag
    26941 gtgcgtctgc tgcgtgcgat tcaggagcgc gaagttcagc gtgtcggtag caaccagact
    27001 atctcggttg atgtccggct gattgcggcg acccatcgcg atcttgccgc agaggtgaat
    27061 gccgggcgtt ttcgccagga tctctactat cgcctgaatg tggtggcgat tgaagtacca
    27121 tcgctgcggc aacggcggga agatatccct ctgctggctg gccattttct gcagcgcttt
    27181 gccgggcgta atcgcaaggc ggtaaaaggt tttacgcccc aggcgatgga tctgttgatt
    27241 cattacgact ggccgggaaa tattcgtgag ctggaaaacg cggtggaacg ggcagtggtg
    27301 ctgctgccgg ggaatatatt tccgaacgcg agctgccgct ggcgattgcc agtacgccga
    27361 tcccgctggg gcaaagtcag gatattcagc cgctggtgga agtggaaaaa gaggtgattc
    27421 tggcggcact ggagaaaacg ggcggcaaca aaactgaagc cgcccgtcag ttagggatca
    27481 cgcgtaaaac gttattggca aaactgtcgc gttagttctg ctcgcgttcg atagcacgcc
    27541 agccgatatc tttccggcag aagcagtcgt cccagtggat atcggtcatt aaggcatagg
    27601 cgcgtttctg cgcttctgcc acggtatgac ccagcgcggt gacgcacagt acgcgcccgc
    27661 cgttggtcac tacctgctcg tcatccgcca gttttgtgcc cgcgtggaac actttgccgc
    27721 ctgccacttc ttccagcagc aggccgtgga tcacgtcacc ggtgcggtaa tcacccggat
    27781 atccacccgc agccatcacc acgccgagag aagcgcgttc atcccactcg gacgttttct
    27841 cgtccagttt gctttcacag gccgccaggc agagctcaac cagatcggac ttcatgcgca
    27901 gcataatcgg ctgggtttcc ggatcgccaa agcggcagtt aaattcaata accttcggat
    27961 tgccctgttt gtcgatcatc aggcccgcgt agagaaaacc ggtgtaggtg ttgccttccg
    28021 ccgccatgcc tttcacggtt ggccagataa tacgttccat ggtgcgctga tgaacgtcat
    28081 cggttactac cggcgcgggg gagtaagcgc ccatcccgcc ggtgtttggt ccggtatctt
    28141 tatcgcctac gcgtttgtga tcctggctgg tagccatcgg cagcacatgc tcgccgtcca
    28201 ccatcacgat aaagctcgct tcttcgccat cgaggaactc ttcgataacg atgcgatgac
    28261 ccgcgtcgcc aaaagcgttg cccgccagca tatcgtgaac agccgcttcc gcttcttcca
    28321 gcgtcatcgc cacgataacg cctttcccgg cagccagacc gtccgcttta atgacgattg
    28381 gcgcgccttt ctcacgcaga tacgccagcg caggttctac ctcggtgaag ttctggtatt
    28441 ccgccgtagg gatcttatgg cgggccagga aatctttggt aaacgctttt gagccttcca
    28501 gttgggccgc acctgcggtt gggccgaaga ttttcagccc ggcggcgcgg aaggtatcga
    28561 ccacgccttt caccagcggc gcttccgggc cgacgatggt cagatcaatc ttttcgtttt
    28621 gtgcgaaatc caacagcgcc gggatatcgg tcacgccaat agcaacgttt tgcagcgcgg
    28681 gttccagcgc agtgcctgca ttacccggag caacaaaaac agtctcaacc agcggcgact
    28741 gggccgcttt ccaggccagc gcgtgctcgc gcccgccgtt accaatcact aatactttca
    28801 tctattgctc cattaatggc ggaagtggcg catgtcggtg aagagcatcg caataccgtg
    28861 ctcgtcggcg gcggcaatca cttcgtcatc acggatggaa ccgccaggct ggattacgca
    28921 ggtcacgccc gcagcggcgg cggcatcaat accgtcgcgg aacgggaaga acgcgtcaga
    28981 agccatcgag gaacctttca cttccaggcc ttcatcggca gctttaatac cggcgatttt
    29041 cgcggagtac acgcggctca tctggcccgc gccaataccg atggtcatat tgtttttggc
    29101 atagacgata gcattggatt tcacgaactt cgccactttc cagcagaaca gcgcatcgcg
    29161 cagttcctgt tcggtcggct gacgttgggt gacgacgcgc agttcttccg caccgaccat
    29221 ccccaggtca cgatcctgaa ccagcagacc gccgttcacg cgtttgaaat caagacccgg
    29281 aacacgctcg ccccactgac cgcaggtcag aacgcgtacg ttctgcttgg cggcggtgat
    29341 tttcagggct tcttcgctgg cggaaggcgc aataatcact tcgacaaact gacgagaaat
    29401 gatggcctgt gcggtttccg catctagctc gcggttaaag gcaatgatgc cgccgaatgc
    29461 ggaggttggg tcggttttgt acgcgcgatc gtaagcatca agaatggaat tgccgatagc
    29521 tacaccgcaa gggttggcgt gcttcacaat cacacatgcc ggctcggcga actctttcac
    29581 gcactccagc gccgcatcgg tatcggcgat gttgttataa gagagggctt taccctgaac
    29641 ctgggttgcg gtagcaacgg aggcttcttt cacattctct tctatataga aggcagcctg
    29701 ctggtggctg ttctcgccgt aacgcatatc ctgcttctta atgaagttca ggttcagcgt
    29761 gcgtgggaag cgaccggcgg cttctttgct ttcaccgtgg tacgccggaa ccatgctgcc
    29821 gaagtagttg gcaatcatgc tgtcgtaggc ggcagtgtgt tcgaaggctt tgatggcgag
    29881 gtcgaaacgg gttgcaagcg tcagcgatcc ttcgttgtca tccatctctt taataatggc
    29941 gtcgtagtcg ctgctcttca ccacgattgc gacatcttta tggttcttag cggcggagcg
    30001 caccatggtc gggccgccga tatcgatgtt ctcaaccgca tcttccagcg agcagccttc
    30061 acgagcaaca gtctgggcga acggatacag gttaacaacc accatatcga taggctggat
    30121 ctgatgttct tccataatgg catcgtcctg gccgcgacgg cccagaatgc caccatgtac
    30181 tttcggatgc agggtcttca cgcgtccatc catcatctcc gggaaaccgg tgtaatcgga
    30241 aacttcggtt accggcagac ctttttctgc taacagacgg gcagtgcccc ctgtagacag
    30301 cagctccaca ccgcgtgcgg aaagtgcctg ggcgaattcg acgataccgg ctttgtcaga
    30361 aacactgagc agagcgcggc ggactggacg acgttgttgc atggtaaatc ccctggattt
    30421 gactattaca gagagcgtta gctgaatttt tcgcgaaaaa ctcagctaac gcccctaacg
    30481 gggcatcctt atttttcgcc cgcattgtaa cgaaaacgtt tgcgcaacgc tcgcgaattt
    30541 ttctctttca atggtgatca caattttgac agtggctacc gtgggaaaaa tacagaaatt
    30601 acattgatga ttgtggataa ctctgtgcgt aaaaaggtat aaagcggggt tttgctgggg
    30661 aatgcagcag tcagtcattt ttctgcaatt tttctattgc ggcctgcgga gaactcccta
    30721 taatgcacct ccatcgacac ggcggatgtg aatcacttca cacaaacagc cggttcggtt
    30781 gaagagaaaa accctgaaat tcagggttga ctctgaaaga ggaaagcgta atatacgcca
    30841 cactcacgac agtgcgctaa agctcgtcgc
//
LOCUS       DAJVSY010000031        30292 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.031, whole genome shotgun sequence.
ACCESSION   DAJVSY010000031 DAJVSY010000000
VERSION     DAJVSY010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 30292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30292
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.031"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(1..868)
                     /locus_tag="OQQ19_001283"
                     /pseudo
     CDS             complement(1..868)
                     /locus_tag="OQQ19_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310631.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-6-phosphate synthase"
     gene            complement(843..1643)
                     /gene="otsB"
                     /locus_tag="OQQ19_001284"
                     /pseudo
     CDS             complement(843..1643)
                     /gene="otsB"
                     /locus_tag="OQQ19_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416411.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-phosphatase"
     gene            complement(1810..2796)
                     /gene="araH"
                     /locus_tag="OQQ19_001285"
     CDS             complement(1810..2796)
                     /gene="araH"
                     /locus_tag="OQQ19_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026162.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose ABC transporter permease AraH"
                     /protein_id="HCS1802975.1"
                     /translation="MSSVSTSGSGAPKSSFSFGRIWDQYGMLVVFAVLFIACAIFVPN
                     FATFINMKGLGLAISMSGMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINLTESL
                     WIGVAAGLLLGILCGLVNGFVIAKLKINALITTLATMQIVRGLAYIISDGKAVGIEDE
                     SFFALGYANWFGLPAPIWLTVACLIIFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVV
                     RTKIIIFVLSGLVSAIAGIILASRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKI
                     SYVVAGILILGTVENAMNLLNISPFAQYVVRGLILLAAVIFDRYKQKAKRTV"
     gene            complement(2811..4325)
                     /gene="araG"
                     /locus_tag="OQQ19_001286"
     CDS             complement(2811..4325)
                     /gene="araG"
                     /locus_tag="OQQ19_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose ABC transporter ATP binding protein
                     AraG"
                     /protein_id="HCS1802976.1"
                     /translation="MQQSTPYLSFRGIGKTFPGVKALTDISFDCYAGQVHALMGENGA
                     GKSTLLKILSGNYAPTTGSVVINGQEMSFSDTTAALNAGVAIIYQELHLVPEMTVAEN
                     IYLGQLPHKGGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVEIAKALAR
                     NAKIIAFDEPTSSLSAREIDNLFRVIRELRKEGRVILYVSHRMEEIFALSDAITVFKD
                     GRYVKTFTDMQQVDHDALVQAMVGRDIGDIYGWQPRSYGEERLRLDAVKAPGVRTPIS
                     LAVRSGEIVGLFGLVGAGRSELMKGLFGGTQITAGQVYIDQQPIDIRKPSHAIAAGMM
                     LCPEDRKAEGIIPVHSVRDNINISARRKHVLGGCVINNGWEENNADQHIRSLNIKTPG
                     AEQLIMNLSGGNQQKAILGRWLSEEMKVILLDEPTRGIDVGAKHEIYNVIYALAAQGV
                     AVLFASSDLPEVLGVADRIVVMREGEIAGELLHEQADERQALSLAMPKVSQAVA"
     gene            complement(4395..5383)
                     /gene="araF"
                     /locus_tag="OQQ19_001287"
                     /pseudo
     CDS             complement(4395..5383)
                     /gene="araF"
                     /locus_tag="OQQ19_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416414.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose ABC transporter substrate-binding
                     protein AraF"
     gene            6097..6600
                     /locus_tag="OQQ19_001288"
     CDS             6097..6600
                     /locus_tag="OQQ19_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin-like protein"
                     /protein_id="HCS1802977.1"
                     /translation="MATAGMLLKLNSQMNREFYASNLYLHLSNWCSEQSLNGTATFLR
                     AQAQSNVTQMMRMFNFMKSVGATPIVKAIDVPGEKLNSLEELFQKTMEEYEQRSSTLA
                     QLADEAKELNDDSTVNFLRDLEKEQQHDGLLLQTILDEVRSAKLAGMCPVQTDQHVLN
                     VVSHQLH"
     gene            complement(6679..6930)
                     /locus_tag="OQQ19_001289"
     CDS             complement(6679..6930)
                     /locus_tag="OQQ19_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2766 domain-containing protein"
                     /protein_id="HCS1802978.1"
                     /translation="MSQPLNADQELVSDVVACQLVIKQILDVLDVIAPVEVREKMSSQ
                     LKNIDFSNHPAAADPVTMRAIQKAIALIELKFTPQGESH"
     gene            complement(7045..7131)
                     /gene="azuC"
                     /locus_tag="OQQ19_001290"
     CDS             complement(7045..7131)
                     /gene="azuC"
                     /locus_tag="OQQ19_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein AzuC"
                     /protein_id="HCS1802979.1"
                     /translation="MKLRKILKSMFNNYCKTFKDVPPGNMFR"
     gene            7393..7716
                     /locus_tag="OQQ19_001291"
     CDS             7393..7716
                     /locus_tag="OQQ19_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YecR-like lipofamily protein"
                     /protein_id="HCS1802980.1"
                     /translation="MRLLILTLSLITLAGCTVTRQAHVSEVDAATGIVRLVYDQAFLQ
                     HAHTDRYVSRGIADRACQQEGYTHAIPFGQPVGNCSLFAGSLCLNTEFTLSYQCHHSA
                     FPVFL"
     gene            7887..8384
                     /gene="ftnA"
                     /locus_tag="OQQ19_001292"
     CDS             7887..8384
                     /gene="ftnA"
                     /locus_tag="OQQ19_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HCS1802981.1"
                     /translation="MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLR
                     RHAQEEMTHMQHLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQKIN
                     ELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKELST
                     LDTQN"
     gene            complement(8422..8661)
                     /locus_tag="OQQ19_001293"
     CDS             complement(8422..8661)
                     /locus_tag="OQQ19_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YecH family protein"
                     /protein_id="HCS1802982.1"
                     /translation="MDSIHGHEVLNMMIESGEQYTHASLEAAIKARFGEQARFHTCSA
                     EGMTAGELVAFLAAKGKFIPSKDGFSTDQSKICRH"
     gene            8852..10063
                     /gene="tyrP"
                     /locus_tag="OQQ19_001294"
     CDS             8852..10063
                     /gene="tyrP"
                     /locus_tag="OQQ19_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000797569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine transporter TyrP"
                     /protein_id="HCS1802983.1"
                     /translation="MKNRTLGSVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLW
                     ALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGA
                     GELLASSISDWTGISMSATAGVLLFTFVAGGVVCVGTSLVDLFNRFLFSAKIIFLVVM
                     LVLLLPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVQSIVSYMDGNVRKLRRVF
                     ITGSAIPLVAYIFWQVATLGSIDSTTFMGLLANHAGLNGLLQALREMVASPHVELAVH
                     LFADLALATSFLGVALGLFDYLADLFQRSNTVGGRLQTGAITFLPPLAFALFYPRGFV
                     MALGYAGVALAVLALIIPSLLTWQSRKHNPQAGYRVKGGRPALVVVFLCGIAVIGVQF
                     LIAAGLLPEVR"
     gene            complement(10125..10790)
                     /gene="yecA"
                     /locus_tag="OQQ19_001295"
     CDS             complement(10125..10790)
                     /gene="yecA"
                     /locus_tag="OQQ19_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein YecA"
                     /protein_id="HCS1802984.1"
                     /translation="MKTGPLNESELEWLDDILTKYNTNHAILDVAELDDLLTAVLSSP
                     QEIEPEQWLVAVWGGADYVPRWASEKEMTRFMNLAFQHMADTAERLNEFPEQFEPLFG
                     LREVDGSELTIVEEWCFGYMRGVALSDWSTLPDSLKPALEAIALHGTEENFERVEKMS
                     PEAFEESVDAIRLAALDLHAYWMAHPQEKAVQQPIKAEEKPGRNDPCPCGSGKKFKQC
                     CLH"
     gene            complement(10986..11072)
                     /locus_tag="OQQ19_001296"
     tRNA            complement(10986..11072)
                     /locus_tag="OQQ19_001296"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11036..11038),aa:Leu,seq:taa)
     gene            complement(11085..11158)
                     /locus_tag="OQQ19_001297"
     tRNA            complement(11085..11158)
                     /locus_tag="OQQ19_001297"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11124..11126),aa:Cys,seq:gca)
     gene            complement(11213..11288)
                     /locus_tag="OQQ19_001298"
     tRNA            complement(11213..11288)
                     /locus_tag="OQQ19_001298"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11253..11255),aa:Gly,seq:gcc)
     gene            complement(11440..11988)
                     /gene="pgsA"
                     /locus_tag="OQQ19_001299"
     CDS             complement(11440..11988)
                     /gene="pgsA"
                     /locus_tag="OQQ19_001299"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HCS1802985.1"
                     /translation="MQFNIPTLLTLFRVILIPFFVLLFYLPVTWSPFAAALIFCVAAV
                     TDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIARE
                     IIISALREWMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVA
                     AVLTLWSMLQYLSAARADLLDQ"
     gene            complement(12045..13877)
                     /gene="uvrC"
                     /locus_tag="OQQ19_001300"
     CDS             complement(12045..13877)
                     /gene="uvrC"
                     /locus_tag="OQQ19_001300"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310678.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HCS1802986.1"
                     /translation="MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLS
                     SYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSY
                     PFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR
                     NRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETAS
                     QNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKV
                     LGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS
                     ELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEV
                     KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRY
                     GKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLET
                     LFFEPEDEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGP
                     KRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH"
     gene            complement(13874..14530)
                     /gene="uvrY"
                     /locus_tag="OQQ19_001301"
     CDS             complement(13874..14530)
                     /gene="uvrY"
                     /locus_tag="OQQ19_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrY/SirA/GacA family response regulator
                     transcription factor"
                     /protein_id="HCS1802987.1"
                     /translation="MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCR
                     TNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYL
                     SKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
                     ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ
                     "
     gene            14825..15001
                     /locus_tag="OQQ19_001302"
     CDS             14825..15001
                     /locus_tag="OQQ19_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1802988.1"
                     /translation="MIKIFIGHYINVFYSTADITLKKQPLLFLAKLMVYSAALTFFTA
                     NFHCNMTRKINEYA"
     gene            14988..15212
                     /locus_tag="OQQ19_001303"
     CDS             14988..15212
                     /locus_tag="OQQ19_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2594 family protein"
                     /protein_id="HCS1802989.1"
                     /translation="MSTPDFSTAENNQELANEVSCLKAMLTLMLQAMGQADAGRVMLK
                     MEKQLALIEDETQAAVFSKTVKQIKQAYRQ"
     gene            complement(15279..16027)
                     /gene="sdiA"
                     /locus_tag="OQQ19_001304"
                     /pseudo
     CDS             complement(15279..16027)
                     /gene="sdiA"
                     /locus_tag="OQQ19_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310681.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator SdiA"
     gene            complement(16257..17009)
                     /gene="yecC"
                     /locus_tag="OQQ19_001305"
     CDS             complement(16257..17009)
                     /gene="yecC"
                     /locus_tag="OQQ19_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine ABC transporter ATP-binding protein
                     YecC"
                     /protein_id="HCS1802990.1"
                     /translation="MSAIEVKNLVKKFQGQTVLHGIDLEVKPGEVVAIIGPSGSGKTT
                     LLRSINLLEQPEAGTITVGDITIDTARSLSQQKSLIRQLRQHVGFVFQNFNLFPHRTV
                     LENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA
                     MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD
                     LGRIVEQGAAKALFADPQQPRTRQFLEKFLLQ"
     gene            complement(17006..17674)
                     /gene="tcyL"
                     /locus_tag="OQQ19_001306"
     CDS             complement(17006..17674)
                     /gene="tcyL"
                     /locus_tag="OQQ19_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter permease"
                     /protein_id="HCS1802991.1"
                     /translation="MQESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMR
                     LSPIWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQFGIELDPILSAMIGLSLNTAAY
                     AAETLRAAISSIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT
                     SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQE
                     REPK"
     gene            complement(17689..18675)
                     /gene="dcyD"
                     /locus_tag="OQQ19_001307"
     CDS             complement(17689..18675)
                     /gene="dcyD"
                     /locus_tag="OQQ19_001307"
                     /EC_number="4.4.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-cysteine desulfhydrase"
                     /protein_id="HCS1802992.1"
                     /translation="MPLHNLTRFPRLEFIGAPTPLEYLPRFSDYLGREIFIKRDDVTP
                     MAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENP
                     IGTTAENYLTNGNRLLLNLFNTQIEMCDALTDPNAQLEELATRVEAQGFRPYVIPVGG
                     SNALGALGYVESALEIAQQCEGAVNISSVVVASGSAGTHAGLAVGLEHLMPESELIGV
                     TVSRSVADQLPKVVNLQQAIAKELELTASAEILLWDDYFAPGYGVPNDEGMEAVKLLA
                     RLEGILLDPVYTGKAMAGLIDGISQKRFKDEGPILFIHTGGAPALFAYHPHV"
     gene            complement(18780..19580)
                     /gene="tcyJ"
                     /locus_tag="OQQ19_001308"
     CDS             complement(18780..19580)
                     /gene="tcyJ"
                     /locus_tag="OQQ19_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1802993.1"
                     /translation="MKLAHLGRQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLL
                     VGLEGTYPPFSFQGDDGKLTGFEVEFAQQLAKHLGVEASLKPTKWDGMLASLDSKRID
                     VVINQVTISDERKKKYDFSTPYTISGIQALVKKGNEGTIKTAADLKGKKVGVGLGTNY
                     EEWLRQNVQGVDVRTYDDDPTKYQDLRVGRIDAILVDRLAALDLVKKTNDTLAVTGEA
                     FSRQESGVALRKGNEDLLKAVNDAIAEMQKDGTLQALSEKWFGADVTK"
     gene            complement(19668..20219)
                     /gene="fliZ"
                     /locus_tag="OQQ19_001309"
     CDS             complement(19668..20219)
                     /gene="fliZ"
                     /locus_tag="OQQ19_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310687.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulatory protein FliZ"
                     /protein_id="HCS1802994.1"
                     /translation="MMVQHLKRRPLSRYLKDFKHSQAHCAHCRKLLDRITLVRDGKIV
                     NKIEISRLDTLLDENGWQVEQQSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEM
                     SPGTVREYVVRLRRLGNHLHEQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQ
                     HYQRQTCTGLVQKSSSLPASDIY"
     gene            complement(20265..20984)
                     /gene="fliA"
                     /locus_tag="OQQ19_001310"
     CDS             complement(20265..20984)
                     /gene="fliA"
                     /locus_tag="OQQ19_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HCS1802995.1"
                     /translation="MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDL
                     LQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQ
                     AIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELV
                     TDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGE
                     SRVSQLHSQAIKRLSTKLGKL"
     gene            complement(21304..23010)
                     /locus_tag="OQQ19_001311"
     CDS             complement(21304..23010)
                     /locus_tag="OQQ19_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin FliC"
                     /protein_id="HCS1802996.1"
                     /translation="MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDD
                     AAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSEINNNLQRILELTVQASTG
                     TNSDSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKDGSMKIQVGANDGQTITIDL
                     KKIDSDTLGLNGFNVNGKGTIANKAATVSDLTAAGATGTGPYAVTTNNTALSASDALS
                     RLKTGDTVTTTGSSAAIYTYDAAKGNFTTQATVADGDVVNFANTLKPAAGTTASGVYT
                     RSTGDVKFDVDANGDVTIGGKAAYLDATGNLSTNNAGIASSAKLSDLFASGSTLATTG
                     SIQLSGTTYNFGAAATSGVTYTKTVSADTVLSTVQSAATANTAVTGATIKYNTGIQSA
                     TASFGGANTNGAGNSNDTYTDADKELTTTASYTINYNVDKDTGTVTVASNGAGATGKF
                     AATVGAQAYVNSTGKLTTETTSAGTATKDPLAALDEAISSIDKFRSSLGAIQNRLDSA
                     VTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLL
                     QG"
     gene            23276..24682
                     /gene="fliD"
                     /locus_tag="OQQ19_001312"
     CDS             23276..24682
                     /gene="fliD"
                     /locus_tag="OQQ19_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HCS1802997.1"
                     /translation="MASISSLGVGSGLDLSSILDSLTAAQKATLTPISNQQSSFTAKL
                     SAYGTLKSALTTFQTANTALSKADLFSATSTTSSTTAFSATTAGNAIAGKYTISVTHL
                     AQAQTLTTRTTRDDTKTAIATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNA
                     KAGVSASIINVGNGEYRLSVTSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEV
                     SVAAKNAQLTVNNVAIENSSNTISDALENITLNLNDVTTGNQTLTITQDTSKAQTAIK
                     DWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRTIQTQLKSMLSNTVS
                     SSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDGKKTGITTTIGS
                     NLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQVARYKKQFTQLDVLMTSL
                     NSTSSYLTQQFENNSNSK"
     gene            24707..25117
                     /gene="fliS"
                     /locus_tag="OQQ19_001313"
     CDS             24707..25117
                     /gene="fliS"
                     /locus_tag="OQQ19_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HCS1802998.1"
                     /translation="MYAAKGTQAYAQIGVESAVMSASQQQLVTMLFDGVLSALVRARL
                     FMQDNNQQGKGVSLSKAINIIENGLRVSLDEESKDELTQNLIALYSYMVRRLLQANLR
                     NDVSAVEEVEALMRNIADAWKESLLSPSLIQDPV"
     gene            25117..25483
                     /gene="fliT"
                     /locus_tag="OQQ19_001314"
                     /pseudo
     CDS             25117..25483
                     /gene="fliT"
                     /locus_tag="OQQ19_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001015018.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulatory protein FliT"
     gene            25561..27048
                     /gene="amyA"
                     /locus_tag="OQQ19_001315"
     CDS             25561..27048
                     /gene="amyA"
                     /locus_tag="OQQ19_001315"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HCS1802999.1"
                     /translation="MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPA
                     YKGASGGYSVGYDSYNLFDLGEFDQKGSIPTKYGDKVQLLAAIDALKRNDIAVLLDVV
                     VNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCF
                     SGIDHIENPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKY
                     WARWVMEQTQCDGFRLDAVKHIPAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQT
                     YIDQVEGKTMLFDAPLQMKFHEASRMGRDYDMTQIFTGTLVEADPFHAVTLVANHDTQ
                     PLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGAHYEDVGGDGQTYPIDMPII
                     EQLDELILARQRFAHGVQTLFFDHPNCIAFSRSGTDEYPGCVVVMSNGDDGEKTIHLG
                     ENYGNKTWRDFLGNRQESVITDEHGEATFFCNGGSVSVWVIEEVI"
     gene            complement(27082..27495)
                     /locus_tag="OQQ19_001316"
     CDS             complement(27082..27495)
                     /locus_tag="OQQ19_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310694.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1803000.1"
                     /translation="MKKLAIAGALMLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQ
                     RALVSPEAIGSLIVTKEGDTLDCRQWQRVIAVPGKLALMSDDLTNVTVKRELYEVERD
                     GNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP"
     gene            27682..28887
                     /gene="yedE"
                     /locus_tag="OQQ19_001317"
     CDS             27682..28887
                     /gene="yedE"
                     /locus_tag="OQQ19_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HCS1803001.1"
                     /translation="MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGE
                     FTRWGGQLLQLFGVHAEEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVK
                     LRMPRSRIRIMQAIIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSW
                     FGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFRLGMLVFFGMLGWALLTAMNQ
                     PKLGLAMLFGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYV
                     QLGVEPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGS
                     TILAYYWDDFAPALATDWDKINLLKTFGPMGGLLVTYLLLFTALMLIIGWEKRFFRRA
                     APQTAKEIA"
     gene            28884..29117
                     /gene="yedF"
                     /locus_tag="OQQ19_001318"
     CDS             28884..29117
                     /gene="yedF"
                     /locus_tag="OQQ19_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HCS1803002.1"
                     /translation="MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCP
                     QSINNIPLDARNHGYTVRDIQQDGPTIRYLIQK"
     gene            29224..29895
                     /locus_tag="OQQ19_001319"
     CDS             29224..29895
                     /locus_tag="OQQ19_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SOS response-associated peptidase"
                     /protein_id="HCS1803003.1"
                     /translation="MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKV
                     LLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADG
                     WFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFEHGDEAEGFLIVTAAADQGLVDIH
                     DRRPLVLSPEAAQEWMRQEIGGKEASEIATNGCVPANQFTWHPVSRAVGNVKNQGAEL
                     IQPVC"
     gene            complement(29935..>30292)
                     /locus_tag="OQQ19_001320"
     CDS             complement(29935..>30292)
                     /locus_tag="OQQ19_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1803004.1"
                     /translation="PGRNVRAKSGLNRSILDQGWYEMRRQLEYKQLWRGGQVFAVPPA
                     CTSQRCACCGHTAKENRLSQSKFRCQVCGYTANADVNGARNILAAGHAVLACGEMVQS
                     GRPLKQEPTEMIQATA"
BASE COUNT         7520 a         7795 c         7262 g         7715 t
ORIGIN      
        1 taacgaattt taccatgatg ctgcggatat ttttccagca acgcttcata ggcgagaaaa
       61 cgctctggca aacctttgga ataatccagc cgttcgacag aaaagatatt ttgtacgttt
      121 ttcagttccg ctttaagttg cgccagtttt ggcggcagtg gcccggcagc ctgtttggct
      181 atttctttcg gttcaatgcc gatcgggtag acttctgttc gaaatgcttt gccccaggct
      241 gtatggcttt ttgcgctacg tgtcgtgacg cgggtcaggt tagaaagaca atccaggaac
      301 gccagacgat cgttttctgt ctggaaaccc agcaaatcat aatcacaaag ctgttcaagc
      361 aaggtgtcat atgtcggcag cgcgttgaag atttccggtg tcgggaaagg aatatgcaga
      421 aagaaaccaa tgcgattatt caccccacgt ttgcgtaatt catgcgcaaa gggcaacagg
      481 tgataatcgt ggatccagat aatgtcatcg tcttgcaaca gcggcagtaa tttatctgcc
      541 agcaacgcat ttacgcgtag atagccgtcc caggcaggac gctgaaattg catcagatcg
      601 agccgataat gaaaagcggg ccagagaacg gcattggaga attggttgta gtattcgtca
      661 aggtcctgtt cgctgaggtt aaaagaggcc cacgtaatgt tacctttttt agcggctgat
      721 cctcattccc tgtttcacca ctccagccaa accacagtcc gcctgtggct ttcagtgccc
      781 ccagtatgcc aacggcaagg ccaccggcac tggcggcgtg ctcgtctggt ggtgcaatcc
      841 ggttagatac tacgactaaa cgactcatag tcatcactcc tgttattttc tcttttttgt
      901 tgtaatgcgg tggttatcat ttcaagcctg ctccagacat ccggcacacc cgccagtcgc
      961 catgatgcct gagttgcacc tgtgccaatt tttactgaca ttccgcccag tcggttaacg
     1021 actgcgaagc cagattcatc ggttaaatca tcgcccagaa atacgggcgt tcgcccgata
     1081 aagggagctt cctgcataaa agctgcaatt gcctcacctt tactggtacc tctcggtttg
     1141 atctcgacaa cacactttcc ctgctgtaac gccatttgtg gccagatctg agtaatacgt
     1201 tacgctaatg tcattaatgc gtcttcatgc tgcggagcct gacgataatg cagcgcaaaa
     1261 gccatccctt tcgcctccag ctccgcgccg ggatactgag cgataactgt atgcagttgc
     1321 acgctaatat cacgcgcaat cgcatccggc agatgaacga tatgcgtttt accattgatg
     1381 tcacggcgct ccgccccatg cacgcccgct aacgggaagc gataaggttt tgccagtgcg
     1441 tcaagctcca ccattgagcg ccctgatatc aatgccaatg caccatcact tgcggttgcc
     1501 agtagctgta gtccttgcag aatattgtca ggcacgacga cctgatcggg atgcggtttg
     1561 atttccgcca gcgttccatc gagatcaaaa aaccaggcat atttcgcgga tagttcaggg
     1621 gtttcggtta acggttctgt cacccggttc tcctacttct cttttcttat tgttttgcgc
     1681 agaacgcgct ttacagacat gtaagtatag acagtgtgac gggggtcgcc atttgcaacg
     1741 aagaacagcc aaccgttatg gcggttggct gtggtgggaa aaaacgctaa attgttgcag
     1801 aaaaaagcat cagacagtgc gtttcgcttt ttgcttgtaa cggtcgaaga tcaccgctgc
     1861 cagcaggatt aagccgcgaa ccacgtactg cgcgaaagga gaaatattaa gcaggttcat
     1921 ggcgttttcc acggtgccta aaattaagat acccgccacc acatatgaga tttttccgat
     1981 gcctcctttc agagaaacgc cacctaaaac gcaggcggag ataacaatca gctcgtaacc
     2041 aatcgacgtc attggctgcc cactggtcat acgtgaagcc agaataattc cggctatcgc
     2101 agataccagg ccagagagaa caaagataat aattttggtg cgaacaaccg gtacacccgc
     2161 cagacgcgca gcctcttcgt tcccgccaat cgccagggtg ttacgaccaa aggtggtttt
     2221 attcagcaac aaaccaaaga taatcagaca cgcgacggtg agccagattg gcgcaggcag
     2281 accgaaccag ttagcgtaac caagggcaaa gaagctttca tcttcgatac cgaccgcttt
     2341 accgtctgaa atgatgtacg ccagacctcg aacaatctgc atcgttgcca gtgttgtgat
     2401 cagagcattt attttcagtt tggcgataac aaagccattg accaggccac agagaatgcc
     2461 aagcagcaac cccgctgcca cgccaatcca caggctttca gtcaggttga taaccaccgc
     2521 cgtggtgaca cccgcacagg caattacgga ggcgacagaa aggtcaaagt caccggaagc
     2581 aaggcagaac aacatgccac acgccaccat ccccgacatg gaaattgcca ggcccaaccc
     2641 tttcatatta atgaaggtgg caaaatttgg gacaaaaatg gcacaggcga taaagagcac
     2701 cgcaaacacc accagcatgc cgtactgatc ccagatacgc ccgaagctga atgacgactt
     2761 aggtgcgcca gaacccgatg tagaaacaga agacatcata ctctccttac tcaggcaact
     2821 gcctggctga ctttaggcat cgcaaggctc agtgcctgac gctcatctgc ctgctcgtgt
     2881 aacaattcac cggcgatttc accttcccgc atcaccacaa tccggtcggc aacgccgagg
     2941 acttcaggta agtcgctgga ggcaaacagc accgccacac cctgcgccgc cagcgcataa
     3001 attacgttat atatttcgtg cttagcacca acatcaatgc cgcgcgtagg ttcatccagc
     3061 aaaatgacct tcatctcttc cgataaccag cggcccagaa tggctttttg ctgatttccg
     3121 cctgagagat tcatgatcag ttgctcagcg cccggcgttt tgatgttgag cgaacgaatg
     3181 tgctgatcgg cattgttttc ttcccaaccg ttgttgatta cacaaccgcc gagcacatgt
     3241 ttgcgtctgg cactgatgtt gatattgtcg cgaacggagt gcacgggaat aatgccttcc
     3301 gctttgcgat cttccgggca gagcatcatg cctgcggcaa tggcgtggct cggtttacga
     3361 atatcgatcg gctgttggtc gatataaacc tgaccggcgg tgatttgcgt cccgccaaac
     3421 aagcctttca ttaattcgct acgccccgcc cctaccagac caaacagccc aacaatttca
     3481 ccactgcgaa ccgccagact tattggcgta cgcacgcctg gtgctttcac agcatcaaga
     3541 cgcaggcgct cctcgccata actacgaggt tgccagccgt agatatcgcc aatgtcgcgc
     3601 ccgaccatcg cctgcaccag cgcgtcgtgg tcaacctgct gcatatcggt aaaggttttg
     3661 acataacgtc catctttaaa gacagtgatg gcatcgctga gggcaaatat ttcttccata
     3721 cggtgagaaa cgtataagat cacccgcccc tcttttcgca gttcacgaat aacgcggaaa
     3781 agattgtcga tttcgcgggc agaaagggag ctggttggct catcaaaggc gataatttta
     3841 gcgttacgcg ccagcgcctt ggcgatttca accatctgcc actgaccaat ggagagatat
     3901 ttcagcggcg tgtccgggtc aatatccata ccaagatgtt taagttgtaa acccgcctca
     3961 taattcagca atgagcgatt cacaatgccg cctttatgcg gcagctggcc gagatagatg
     4021 ttttccgcga cggtcatttc cggcacgaga tgcagttcct ggtaaataat cgccacaccc
     4081 gcgttaagtg ctgcggtcgt gtcggaaaag gacatttcct gcccattaat cactacagaa
     4141 cccgtggttg gcgcatagtt gccgctgagg atttttaaga gagttgattt tcctgcgcca
     4201 ttttcaccca tcaacgcatg aacctgaccg gcatagcagt caaaactaat atccgtcagc
     4261 gccttaacgc cgggaaacgt tttaccgatg ccgcgaaatg agagatacgg ggtagactgt
     4321 tgcataacgt ctccgtgaat cactggtcgt tcacaccccc tctgcatcat gcagagggga
     4381 atttttccgg caaattactt accgcctaaa ccttttttct ccagttcttc tttaaagttg
     4441 tcacgcgtga tcagcaccac gtcggtaact tcggtaaatt ttggcggttc aacgtctttt
     4501 gctacccagt tgtaaagcat ttcgctggat ttatagccat gtacgtccgg gcttggcagc
     4561 agggaaccgt agaagccggt tgcctgtact ttagacagtt cgctcaccgc atccacaccg
     4621 ttaatgccaa tgccgataat atcggcagct ttaaagccct gaccttccgt cgcgcgtacg
     4681 ccgcccagca cggtgctgtc gttcataccg acgatcagcc aatgtttaac ttcaggatgt
     4741 tgaaccagca ttgagttggc agcgtcaaat gcccccggga tgtcgttaga tttggtaggt
     4801 acctgataaa tttgtttttc cgggaatccg gccgctttca gcgcatccat agatcccgta
     4861 gtacggcggc gggcagtatc cagttcgttg gcggtaatca ccatcaccgc gctttctttg
     4921 acatcccagc cacgtttctg catctcttta tacagttcct gaccctgacg ttcgccaatt
     4981 ttagtcgcgc catcatcacc agcggaacgg tatccattgg cttacctttg gcgttaacaa
     5041 actgatcatc cacggcaatg actttcatat cgtagccacg cgctttcgcg acgatggcag
     5101 agccgagttt ggggtccgga gtacaaataa cgaaaccttt tgcgccactg gcagccaggc
     5161 tgtcgatcgc gttcaatgtt ttttcgccat ccggcacggc aatcttaata acctcaaacc
     5221 ctaaatcctt cccggcttta tcggcaaact tccattcggt ctggaaccac ggctcttccg
     5281 gttgcttcac cagaaaaccg agcttcaggt tctccgccat agcggattgt gacataacgg
     5341 ctgccagacc aatggctgcc agggctttag taaatttgtg catggttctc tccagcttta
     5401 gtgtcgtttt gtgtagggca aaaacgaatg acattcgtta aattaatcgg aaaacaaagc
     5461 attacctttt aactaaaaga taagtgaccg tgttgacata gttttagcga gaaattaatt
     5521 ctccatagga gagcaatatc acatcgcaga attacagtga gaacgtgcat aaatttagcg
     5581 ggaaaagaca taagggaaag ccaatttgtc agacaaattg tcgaatgcac agcagattaa
     5641 tccataagat tagcttggaa atccttgttg tctttggtac ccatgcggga tgtcttcttt
     5701 ttaaccagtc aataggccgc attacctggc gttgagtttt tgaaatggtg taataaccgc
     5761 aactcaaaga tgtggaaaat gcacgtcatt catttcgcca ttaattatca ctgtgctcat
     5821 taattaacag aacacgtata atgagagcca tctcgcaaaa atgaaaaaac gttttataaa
     5881 atcatcattt catcaatgaa atgtaaaaat atataaactt gatgatttaa gcattttttt
     5941 atacccgttc agacgttatt cttatttcag atcatcgtca gaattgactc cacgatcaca
     6001 tttcggaccg gcagaaagga attattctgc aaacagtaat tatggtgttt tgatttatct
     6061 tgcacctctc cacttctgga tataaggata ttaggtatgg caaccgctgg aatgcttctc
     6121 aaactcaact ctcaaatgaa ccgcgagttt tacgcatcca atctctacct tcacctgagt
     6181 aactggtgtt ctgaacagag tctgaacggc accgccactt tccttcgcgc ccaggcacag
     6241 agtaatgtga cccaaatgat gcgcatgttt aactttatga agagtgtcgg cgctaccccc
     6301 atcgttaaag ccattgatgt tcccggtgaa aaactgaact ctctggaaga actgttccaa
     6361 aaaacgatgg aagaatacga gcaacgttct agtacgttgg cacagttagc cgatgaagcg
     6421 aaagaactga atgatgattc aaccgtcaat ttcctgcgcg atctggaaaa agaacagcag
     6481 catgatggtc tgttgctgca aaccattctt gatgaagtgc gcagtgcgaa acttgctggt
     6541 atgtgcccag tgcagaccga ccaacatgtt ctgaatgtcg tgtcgcatca gctgcattga
     6601 tcatacatcg gcgctaatgc attgcgccga tgaagttttt gagaaaccgc tgcctcatct
     6661 ttttgaagca gcggtttttt aatgggattc gccttgtggg gtaaacttga gttcaatcag
     6721 cgcgatggct ttttggattg cccgcatggt gaccgggtct gcggcggcgg gatggttact
     6781 aaagtcgata ttcttcagct gactggacat tttttcacga acttcaacgg gcgcgattac
     6841 atcgagaaca tccagaattt gtttgataac caactggcaa gcaaccacat cagaaaccag
     6901 ttcctgatcg gcattcagcg gctgggacat cgtaaactcc tgatagcatt ttgaaagccg
     6961 ttatagtagc ggcttcacat cttcagcgat agtcacatcc accgtcatca ggacacaaaa
     7021 aaacctgccg gagcaggttt tttgttatcg gaacatattg cctggcggta cgtctttgaa
     7081 cgtcttgcaa tagttattga acatactttt caggattttg cgcagtttca tcgcggcact
     7141 ccgaccattt gttatacatg tgttattttc tttgtgctta taatatgaca accatcacaa
     7201 aaatcaatct ttatgtgatg caaatcacac aaataccccc ttaatgttat aaaaatgata
     7261 atcaaaaaac agccccccat ttctgacacc tacagatggc aagaaatagc gcctgccagg
     7321 cgtcttttcc ggtcattgtc gcagcgctgt aacgcgtaaa atagtgcttt cttttactct
     7381 tctggctgga ccatgagact tctgattctg actctttcat taataacgct ggcggggtgt
     7441 acggttactc gccaggccca tgtgagcgaa gttgacgcgg caacaggtat tgtacggttg
     7501 gtttatgacc aggctttttt gcagcatgcc cataccgatc gttatgtcag tcgcgggatc
     7561 gccgatcgcg catgccagca ggaaggctat acccacgcga tcccctttgg tcagccagta
     7621 ggcaactgta gcctttttgc gggttcctta tgtttgaata cggaattcac tttgtcatat
     7681 cagtgccatc attccgcctt ccctgtcttt ctctaaatat tttaatcagc gaggggatct
     7741 tcgctgatta aaaaaatagc ggtaatgcgt tttattccca ttcgtatttt taataattga
     7801 agtttatatt ttaccttttg caaataataa aataacaaat tatagtgacg ccacagcaac
     7861 aaatataacc tttgtggagc actatcatgc tgaaaccaga aatgattgaa aaacttaatg
     7921 agcagatgaa cctggaactg tactcttcac tgctttatca gcaaatgagc gcctggtgca
     7981 gctatcatac cttcgaaggt gctgccgcgt tcctgcgccg tcacgcccaa gaagagatga
     8041 cgcatatgca gcatctgttt gattacctga ctgataccgg caatttaccg cgtattaata
     8101 ccgttgaatc tccgtttgct gaatattcct cacttgatga attattccag gaaacctata
     8161 aacacgaaca attaatcacc cagaaaatta acgaactggc tcatgctgca atgaccaatc
     8221 aggactaccc aacatttaat ttcctgcaat ggtatgtttc tgagcagcat gaagaagaga
     8281 aactgttcaa atcgattatt gataaattaa gcctggcagg caaaagcggc gaaggtctgt
     8341 attttatcga caaagaactc tctaccctcg acacacaaaa ctaatactct ccggcggcag
     8401 gtttactgcc gccgtttcaa atcagtgacg gcaaatctta ctctgatcgg tcgaaaaacc
     8461 gtctttcgaa ggtataaatt tgccttttgc tgccagaaac gctaccagct ctcccgctgt
     8521 catcccttct gccgagcagg tgtgaaaacg tgcctgttca ccaaaacgcg ctttaattgc
     8581 tgcttccaga ctggcatgcg tatattgctc gcctgattca atcatcatat ttaacacttc
     8641 atgaccgtga atagagtcca tcgttcctcc tcaaaaaaag cctagcgtag cgattgccgc
     8701 ttatgaagac tttgcgccag agcagaactg aatgcttttt attgtacatt tatatttaca
     8761 ccacatgtaa cgtcggtttg acgaagcagc cgttatgcct taacctgcgc cgcagatatc
     8821 actcataaag atcgtcagga cagaagaaag cgtgaaaaac agaactctgg gaagtgtttt
     8881 tatcgtggcg ggaaccacaa ttggcgcagg catgctggca atgccgctgg ctgcggcagg
     8941 tgttggtttt agcgtcacgt taatcttgtt gattgggctt tgggcgttga tgtgctacac
     9001 ggcgctatta ctgctggagg tgtaccagca tgttccggca gataccggtc tgggcacgct
     9061 ggcaaaacgc tatctgggac gctacggtca atggctgacg ggcttcagta tgatgttctt
     9121 aatgtatgct ctgactgcgg catacatcag cggtgccggt gaattgttgg cctccagcat
     9181 cagcgactgg acaggtattt caatgtcggc aaccgctggc gtgctgttgt tcacttttgt
     9241 tgccggtggc gtggtttgtg ttggaacatc gctggtcgat ttatttaacc gttttctgtt
     9301 cagcgccaaa attatttttc tggtggtgat gctggtattg ctgctaccgc atattcacaa
     9361 agtgaatctt ttaaccctgc cgttgcaaca ggggctggct ctgtcagcaa tcccggtgat
     9421 ttttacctca tttggttttc acggtagcgt gcagagtatt gtcagctata tggatggcaa
     9481 cgttcgtaag ctacgcaggg tgtttataac cggtagtgcg atccccctgg tggcatatat
     9541 tttctggcag gtggcaacgc ttggcagcat tgattcaaca acctttatgg gattgctggc
     9601 taatcatgct ggattaaacg ggctgttaca ggcgttacgc gaaatggtgg cctctccgca
     9661 tgttgagctg gcagtgcatt tatttgctga tttagccctc gccacgtcat ttctcggcgt
     9721 tgcgttaggc ttatttgatt atctggctga tttatttcag cgttcaaata ccgttggtgg
     9781 acggttgcaa actggtgcaa ttacctttct gccgccgttg gcgtttgcac tgttttatcc
     9841 acgaggattt gtgatggcgc tgggttacgc cggtgtggcg ctggcggtac tggcattgat
     9901 tatcccttcg ctgttgacct ggcaaagcag aaagcacaat cctcaggcgg gttaccgggt
     9961 caaaggtggt cgtccggcgc tggtggtggt gtttctctgt ggtattgctg tgattggcgt
    10021 gcaatttttg attgcggcag ggttgttacc agaagtgagg tgatcagata gcctcaaatt
    10081 ccttattggg tgccagaatt aacgctgaca cccaatttgg cctcttaatg caggcagcac
    10141 tgcttaaatt tcttaccact accgcacggg caaggatcgt tacgccccgg tttctcttct
    10201 gctttgatcg gttgctgaac agctttttcc tgcggatgcg ccatccagta cgcatgtaga
    10261 tcaagcgccg ccagtcgaat ggcatctacg ctctcttcaa acgcttctgg cgacatcttt
    10321 tctacccgct cgaagttttc ctcagtaccg tgcagcgcaa tcgcctccag cgctggtttt
    10381 aacgaatcgg gcaacgttga ccagtcagaa agtgccacgc cccgcatata gccaaagcac
    10441 cactcctcaa caatcgtcag ctcgctgcca tcaacttctc gcaagccgaa taacggctca
    10501 aactgctccg ggaattcgtt cagacgctct gcggtatcgg ccatatgttg aaaagccagg
    10561 ttcataaagc gcgtcatctc tttctctgac gcccagcgcg gcacatagtc agccccaccc
    10621 cacacggcaa ccagccactg ttccggttca atctcttgcg gagaactcaa caccgccgtc
    10681 aataaatcgt ccagctccgc cacatcaagg atggcgtggt tagtgttgta tttggtcaga
    10741 atatcgtcca gccattccaa ctcactttcg tttaacggtc ccgttttcat acgcttttcc
    10801 ttgtggatct caactcgcca gcacctatct tacatgccgg tccgtatcag agatactttt
    10861 tgagtggctt tgccggtgat taaaaattaa ggagggtgta acgacaagtt gcaggcacaa
    10921 aaaaaccacc cgaaggtggt ttcacgacac tgcttattgc tttgatttta ttcttatctt
    10981 tcccatggta cccggagcgg gacttgaacc cgcacagcgc gaacgccgag ggattttaaa
    11041 tcccttgtgt ctaccgattc caccatccgg gctcgggaag aaagtggagg cgcgttccgg
    11101 agtcgaaccg gactagacgg atttgcaatc cgctacataa ccgctttgtt aacgcgccaa
    11161 attcttcagg cctttcagcc agacatccgc ttgacgccga tgtcttttaa actggagcgg
    11221 gaaacgagac tcgaactcgc gaccccgacc ttggcaaggt cgggctctac caactgagct
    11281 attcccgcat tcattaagca atcagttaat cacttgattt tattatcgtc tggcaatcag
    11341 tgccgccgtt cgatgcgttg cattctactt acctggcgcg atgagtcaac gatatttttc
    11401 accacttttg atcgtttgct gaaaattacg ccgaaacgat cactgatcaa gcaaatctgc
    11461 acgcgcagcg ctcaaatatt gcaacattga ccacagagtc agcaccgcag ccacaaagaa
    11521 aagtgcaata ccggcgtact caacccaaat gttcggacgc cacagcagcc aggccaacgc
    11581 caccatctgg gcagtggttt tcactttccc aatccaggag acagccacgc tactgcgttt
    11641 acccaactcc gccatccatt cgcgtagcgc agaaataata atttcacggg cgatcatcgt
    11701 tgccgccggt agggtcaccc accagctgtg ataatgctcg gttaccagca ccatggcgat
    11761 agccacgaga actttatctg ctacagggtc aaggaaagca ccaaaccggg tactctggtt
    11821 ccagcggcgt gccagaaaac catcgaacca gtcagtcacc gccgcgacgc agaaaatgag
    11881 cgcggcggca aacggcgacc aggtgacagg cagataaaag agcaatacaa agaatgggat
    11941 aaggatgaca cggaacagtg taagcaacgt agggatatta aattgcataa tgacgggtaa
    12001 ctatctgttg tcagtaagat tacccctatg ttgctacaga gacatcaatg tttcaacgac
    12061 cagaagatct tttctgccag accttgcgaa atacccggca cttttgcaat ttcctcgacg
    12121 ctggcgttac gtaaaccttg caaaccgccc atatatttca acaacatttg ccgacgtttt
    12181 ggcccgacgc cttcaatggt ttccagggaa ctggtatttt tgaccttcgc ccgtttttta
    12241 cggtgcccgc caatcgcgtg atcatgtgat tcatcgcgaa tatgctggat aacatgcagc
    12301 gcgggtgaat ctggcggcaa actaaatccc tcatcttccg gctcaaagaa cagcgtttcc
    12361 agtccagcct tacgatctgc tcctttggca acgccaagta gcagcggatg atttttatcc
    12421 catgagacat ccagttcggc gaagacattt ttcgcctgcg caagctggcc tttgccgccg
    12481 tcgataagga tcacatccgg gatcttactg tcgtcaatgg ctttaccata acgccgacgc
    12541 agcacctgat tcatcgccgc ataatcatcg cccggcgtga tgcctgtaat gttatagcgc
    12601 cgatactccg cacgcagcgg gccgttagca tcaaacacca cacaggaagc gacggtttgt
    12661 tcgcccatgg tatggctgat gtcaaagcac tccatccgct tcacttccgg caatttcaac
    12721 acgctggcaa gcgcggtcag tcgctggtga acggtagatt gctgcgaaag tttgctggtt
    12781 aaggccgtcg ccgcattggt gcgcgcgagt ttcagataac gcgccctatc gccgcgaggt
    12841 ttggtttgaa cattaatctt gcgtcccgcc agttctgaaa gggaatcggc gagcagcgtt
    12901 ttatcgctaa gattaaaatc gagcaggatc tcacccggta aggtgcgcat ctggctgcct
    12961 tgtaaataga actgacctac gaaggtttct accacctcgc tcagttccgt accgccaggc
    13021 actttcggga aatagctgcg gctgccgagc actttgccct gacgaatgaa caatacgtgg
    13081 acacaagcca tgcccgcatc gaacgccaca ccaataacgt caaggtcgtc gccggtattg
    13141 gaaacaaact gtttttcggt gacgcgtcgc accgcctgaa tttggtcgcg aatacgtgcc
    13201 gcttcttcaa actccagatt ctgactggca gtttccatac ggctaatgag ttgcgtaagc
    13261 acctgatcat ctttgccaga caaaaacagg cgcacatact cgacctgctg agcgtattct
    13321 tcttcactca ccagtccttc aacgcacggt cccagacagc gccctatctg atattgcaga
    13381 cacggacgcg agcgattgcg ataaacacta ttttcgcact ggcgaatggg gaaaatcttt
    13441 tgcagtagcg ccagagtttc acgtacggca tagccattcg ggaacgggcc gaaatattca
    13501 cctttggcat gcttcgcacc acgatgcatc gccagacgcg ggtgggtatc gccactcagg
    13561 aagataaaag gataagattt atcatcgcgt agcaaaacgt tgtaacgcgg ctgatagagt
    13621 ttgatgtagt tgtgttccag caacagcgct tcggtttctg tatgagtaac cgttacatca
    13681 atttgctgaa tctgggcgac cagcgcttcg gttttgcgcg aagcgaggtt gctacggaaa
    13741 tagctggaaa gccgtttttt caggtctttc gctttgccga catagataac cgtaccacca
    13801 gcatcgtaca tgcgataaac gcctggctgg ctggttacgg tttttaaaaa cgcttttgcg
    13861 tcaaactgat cactcactga cttgataatg tctccgcatt acacagacca tggcgaattg
    13921 ccaggtgagt cagctcaaca tcgccatgaa tgtttagttt actgaacata cgatagcggt
    13981 agctgttcac cgttttcgga ctgagattga gctgttctga gatctcattg accttctggc
    14041 ccttggtgat catcagcata atctgcaatt cacgttcaga caaactggca aatgggcttt
    14101 ctgttttttc tggttcgatc tggcttaacg ccatttgttg agcgatgtca gaagcaatgt
    14161 aacgctgccc tgaatagaca gaacgaatcg cactcacgac ttcctgcgga gccgcgcctt
    14221 tgctgaggta gcccgcagca ccggcctgca tgactttcgc tggtaaaggg ttttctgtat
    14281 gaacggtaag catgatgatt ttgacatcag ctgtggaacg cgcgatttta cgcgtcgcct
    14341 caagaccgcc aatgcccggc atactcatgt ccattagcac cacgtcaacg gcatttgtcc
    14401 ggcaccactt aacggcgtct tcaccgcacg atgcctcacc gacgactttt atacccttta
    14461 tatcttccag aatgcgtcgt atccctgcgc gcaccagttc gtggtcatca acaagtagaa
    14521 cgttgatcaa agaaatatct ccagaaatag ggataacgct actgatagtt agtcattcgt
    14581 atattagcgg tttttattgc aactttgaaa cgttaaaaat ggtgggtatt cgatttttct
    14641 ctcgtttttg tcaattcgat tgtccacagt tatggtcacg cccgtcacca acggcttacc
    14701 ggatcgtttc acagtaagcc ctacgatgaa atgtgacaaa aattgacttt attcagcaaa
    14761 aatgaaaatc agcccgctga atatgtaaca ttaattaacc cgaacaatac gggcaaaaac
    14821 attcatgata aaaatattta ttggtcatta tattaacgta ttttatagca ctgccgatat
    14881 cacgctcaaa aaacaaccac tgctattttt agcaaagctt atggtatact ccgccgcctt
    14941 aacatttttc accgcaaatt ttcattgcaa catgacgagg aaaataaatg agtacgcctg
    15001 atttttctac tgccgagaat aatcaagaac tggcaaatga agtctcctgc ctgaaagcga
    15061 tgctgacgct gatgctgcag gcgatgggac aagctgacgc gggccgcgtg atgttaaaga
    15121 tggaaaaaca gcttgcgctg atcgaagacg aaacccaggc tgcagtattt tccaaaacgg
    15181 ttaagcaaat taaacaagcc taccgtcagt aatataaaac cggctgagag cgtgcctttc
    15241 agccggtttt tgcatctggc acgcagaaag aaaagcgatc aaattaagcc agtagcggcc
    15301 gcgtaacagg ccacctgggt cttatttggt gcattgattt ttttctgcat gtttttctga
    15361 tggaaattga ccgtattctc agagattgac aaaatcatcg ctatctctgc tgatgtcttc
    15421 ccttccgccg tccatttcag aatttctttt tcgcgcttgc tgaaattcat ctctggcgtc
    15481 atcactattt catcatttaa acgcatcaga gccatcagac tttcgcgcac cagtaactgc
    15541 atttttaatt gcagttcatc actaagaatg ggtatttcgc gtgtgctgca acgggaaaag
    15601 gacaaaaagc ccagcgcccg atttggcagc attaaatact gagtgacacc gcggcgtaaa
    15661 ccatgtgcgt gcgcggcttc ccataatggc tgtgcttcgc tgaataagtc atcattccac
    15721 attaaatggc cctgactaaa gttttcaggg ttcagcacag gatcaattgc gagaaaatta
    15781 gcacaggatc aattgcgaga aaattttttg cctgataata actaacccac gactcagggt
    15841 aattggtgta gaaagccact ttaggtcgcg tgaatggtac cgggtggcga acacataacg
    15901 aatagtaatc gtactccagc tgctgagcct gaagctctat ttcatggtag acctcttctg
    15961 cggcctccat cctctgaaaa cgcaacagca tcgtgcgacg ccaactgaaa aaatccgtat
    16021 cctgcatagt aaaccgcaac gcccctgaga gtgagtatca tttataatga taattcaaac
    16081 tatcacataa ataagattta tatataattt atattattca ggcaatgaat tacttttgca
    16141 agccatcgca ttctcttatg ttattaatga gttatgctga tttgttaagc agttttatca
    16201 cgcttgaaat ggcgtcccgc cccgacaggt gaatcgtcgg ggctgatttt ttcttattat
    16261 tgcagcagaa acttctcgag gaactgtcgg gtgcgaggct gctggggatc ggcaaataac
    16321 gcttttgctg ccccctgctc gactatccgc cccaggtcca taaaaatcgc ccggtccgca
    16381 acatcccggg caaagctcat ttcgtgcgtc acaatcacca tcgtgcgctt ttcctgcgcc
    16441 agctggcgga ttgtgttcag gacttcgccc accagctctg gatccagcgc tgacgttggc
    16501 tcgtcaaaca aaatcacctc aggacgcatt gccagcgcac gcgcaatcgc tacacgctgc
    16561 tgttgaccgc cagacaaacg acgtggatag ctggtttctt taccggccag cccaactttc
    16621 gccagcagct cgcgagcgcg cgccgtggcc tcttctttcg gttcgccttt gacgatcacc
    16681 ggcccttcaa taatgttttc cagcaccgta cgatgcggaa acaaattaaa gttctggaag
    16741 acaaacccga cgtgctgacg caactggcga atcagcgatt tttgctgact taatgaacgt
    16801 gcagtatcaa tagtgatatc gccaacggtg atcgttcccg cttccggttg ttccagcaga
    16861 tttatgctgc gtagcaacgt ggttttgccg gaaccactcg gaccgataat tgccaccact
    16921 tcgccaggct ttacctcgag gtcgataccg tgcagcaccg tctgaccttg gaattttttc
    16981 accaggttct taacttcaat ggcactcatt tgggttctct ctcctggcga ttaagttgat
    17041 tctcaaaatg gttctgcaac gtcgataaca cagtcgccat gatccagtag atgagcgaag
    17101 ccgccaggta catggtgaac acctccagcg tgcgcgaggt aatcaactgc gcctgacgga
    17161 acagctccgg cacctggatt gtcgcggcca gcgacgtatc ttttaccaga ctgataaagc
    17221 tgttcgacag cggcggcaac gccacccgcg ccgcctgtgg caaaatcgcg cgacgcatgg
    17281 tctgccacgg cgtcatacca atactggcag cggcttccca ctgaccttta tcaatagaag
    17341 aaatggcggc gcgcagcgtt tcggcggcat aggcggcagt gttcagcgac agaccaatca
    17401 ttgctgacag aatgggatct aattcgatac caaactgcgg caggccgtaa tagatcataa
    17461 acagttgtgc gatgagcggc gtaccacgaa aaatagagat ataaaaacgc gccagccagc
    17521 gcacgggcca gattggcgac aggcgcatca gcgcgagaat aaacccgagt agtaagccaa
    17581 aaaacatgcc gccgatactg agttgcaggg tatacccagc ccctttcaac aggaacggca
    17641 aggaatcaat aaccagttgt atactttctt gcatgagcgt tcccggagct aaacgtgggg
    17701 atgataggcg aacagcgcag gcgcgccgcc ggtatgaata aacagaatcg gcccttcatc
    17761 tttgaagcgt ttctgactga taccgtcaat cagccccgcc atcgcttttc cggtatacac
    17821 aggatcaagc agaatgcctt ccagacgcgc cagcaatttc actgcttcca tgccttcgtc
    17881 gttcggcacg ccgtagccag gtgcaaaata gtcatcccag agtaaaattt ccgctgatgc
    17941 ggtcagctcc agttctttcg caatcgcctg ttgtaggtta accactttcg gcaattgatc
    18001 ggcaacggaa cgcgacacgg tcacgccaat cagttcgctt tcaggcatca ggtgttccag
    18061 cccaacagcc aatccggcgt gagttccggc actgcccgat gcgaccacca ccgacgaaat
    18121 attaaccgcc ccttcacact gttgcgcgat ttccagcgca ctctccacat aacccagcgc
    18181 gcccagagca ttagaaccgc caaccggaat gacatacggg cgaaagcctt gtgcttcgac
    18241 tcgcgtcgcc agctcttcca gttgggcatt gggatcggtc agtgcgtcgc acatttcaat
    18301 ctgggtattg aacagattca gcaacaaacg attgccgttg gttaaatagt tttctgcggt
    18361 tgtgccaata ggattttcca gcagcgccac gcagtgcagg ccgagtttcg ccgcaactgc
    18421 ggcagtctgc cgcacatggt tagactggat cgcgccggca gtaatcagcg tatcggcacc
    18481 ttcgcgcagg gcatctgccg cgagaaattc cagcttacgt aatttattgc cgcccattgc
    18541 catgggtgtg acgtcatccc gtttgatgaa aatttcccgt ccaagataat cagaaaagcg
    18601 cggcagatat tcgagcggcg ttggcgcgcc gataaactcc agccgtggaa aacgggttaa
    18661 attatgcagt ggcataatag cctccgatgt gtgttgttgt gattttctta ttatgcacgc
    18721 tgaaaacgcg taaataaaaa aggcgctagt gaaagcgccc ttttttgtca ttatgctgat
    18781 tatttggtca catcagcacc aaaccatttt tcggaaaggg cttgcagagt gccatctttt
    18841 tgcatttccg caattgcatc gttcactgct ttcagcaggt cttcatttcc tttacgcagc
    18901 gccacgccag actcctgacg ggagaatgct tcaccggtta ctgccagcgt atcgttggtt
    18961 ttcttcacca gatccagcgc cgccagacgg tcaacgagga tcgcatcgat acggcctacg
    19021 cgcagatcct gatatttggt cgggtcatca tcataggtac gcacatcgac gccctgaaca
    19081 ttctgccgca gccactcttc atagttggtg cccagaccga cacccacttt tttgcctttc
    19141 agatcagcag ccgttttaat ggtgccttcg ttaccttttt tcaccagcgc ctgaatacca
    19201 gaaatggtgt acggggtaga gaaatcgtat tttttcttgc gctcatcaga aatggtgacc
    19261 tgattaatca ccacatcaat acgtttagag tccagcgacg ctagcatacc gtcccatttg
    19321 gtcggtttta gtgacgcctc aacgccaaga tgttttgcca gctgttgggc aaattccact
    19381 tcaaaaccgg ttaatttgcc gtcatccccc tgaaaactga acggcggata agttccttcc
    19441 agccctacca gtagcgtacc gcgctctttg actttattaa gcagaccttc atctgcaaaa
    19501 cttttaacgc tcatgcccgc aaccagcgcc acggccatca cacccatcaa tgcctgacgt
    19561 cccagatgtg ctaatttcat attcaccccg aatgttgtta tgtctgtttg cagtgtagag
    19621 ccattgtttg taaacacaaa aacaactccg ctacatctta ttcttattta atatatatca
    19681 gaagcaggca ggctggagga tttctgcaca agtccggtac acgtttgacg ctgatagtgt
    19741 tgatacttcc gtaatgcgat gcggtaattg ttggtgctgg tggtgggcag ccacggggcg
    19801 aggatttcat caaggaaacc gtcctgcagc tgatcgaggg aaatattttg ctcatgtaga
    19861 tgattcccca aacggcgcaa acgaacgaca tattcacgca ccgtacctgg gctcatttca
    19921 gtttgctcaa aaagaaattg cttaaagccg ataatatcga aaaaatcact ctgcgttttg
    19981 caatgtaaat caccgcaaaa tcggcacaat gccgcccatg actgttgttc cacttgccag
    20041 ccattttcat caagcagcgt gtccaggcgg gaaatctcga ttttattcac tattttgccg
    20101 tcgcgaacta aggtaatgcg atcgagtaat ttacggcaat gcgcgcaatg ggcctggctg
    20161 tgtttaaagt ctttaagata gcggcttaat ggccgtcttt tcaggtgctg caccatcatt
    20221 aagaactcct ggtagtcaaa gttaaagtgc ggcatttact gacgttataa cttacccagt
    20281 ttagtgctta accgtttaat ggcctggctg tgtaactgac tgacccgcga ttccccgacc
    20341 tccagcaccg cgccaatctc tttgagattc agctcttcct ggtaatagag ggttaatacc
    20401 agtttttcgc gctccggcaa cgtttcgata gcttccatca cccgctggcg cagattactg
    20461 tccagcagtt gttgtagcgg gttttctcgc tgatgatcat cagtaaccag ttcgatgcta
    20521 tcgccgtgct cttcgcgcca ctcatcgtag gagaaaagct ggctgttatt ggtgtcgagc
    20581 aacatttggc gataatcggc aatatcgatc cctaaacgtt ccgctacctc agtttccgtg
    20641 gcgttgcggc caagttcctg ctccagttgc cctattgcct gtgccacttc acgcgcgttg
    20701 cgtcgcacgc tgcgcggcac ccagtcacgg ctgcgaagtt catccagcat agcgccacgg
    20761 atacgctgca ctgcgtaagt tgtaaatgcc gttccttgta gggcgtcata gcgttcgacg
    20821 gcattaagta acccaatgcc gcccgcctgt agcagatcgt caagttccac gctcgcgggc
    20881 agtcgaacct gcaggcgcaa tgcttcgtga cgcaccagcg ggacataacg ctgccacagc
    20941 gagtgtttat ccattacacc ttcagcggta tagagtgaat tcacgataaa cagccctgcg
    21001 ttatatgagt tatcggcatg attatccgtt tctgcagggt ttttaatcgg acgattagtg
    21061 ggtgaaatga ggggttattt gggggttacc ggtaaattcc atgcagaaaa aaccccgccg
    21121 gtggcgggga agcacgttgc tgacaaattg cgctttatgt tgccggatgc ggcgtaaacg
    21181 ccttatccgg cctacaaaaa tgtgcaaatt caataaattg caattcacct tgtaggcctg
    21241 ataagtgcag cgcatcaggc aatttggcgt tgccgtcagt ctcagttaat caggttacga
    21301 cgattaaccc tgcagcagag acagaacctg ctgcggtacc tggttggctt ttgccagcac
    21361 ggagttaccg gcctgctgga tgatctgcgc tttcgacatg ttggacactt cggtcgcata
    21421 gtcggcgtcc tgaatacggg actgcgcttc agacaggttg gtagtggtgt tgttcaggtt
    21481 ggtgactgca gaatccagac ggttctgaat agcacccagg gatgaacgga atttgtcgat
    21541 ggagctgata gcttcatcca gggcagccag aggatctttg gttgcagtgc ctgcactggt
    21601 ggtttcagtg gtcagtttgc ctgtagagtt aacataagcc tgtgccccaa cagtagctgc
    21661 aaatttacca gttgcacctg cgccatttga agctacagtt actgtaccgg tatccttatc
    21721 gacgttgtag ttgatagtgt aagatgcggt tgtggtgagc tctttgtctg catcagtata
    21781 ggtgtcattc gaattaccag caccattagt attcgcacca ccgaaggacg ccgttgcaga
    21841 ctgaatacct gtattatact taattgtcgc accagtaact gctgtgttag ccgttgcagc
    21901 actctgcact gtgctcagta cagtatcagc gcttacagtt ttggtgtagg ttacgccaga
    21961 agttgccgct gcaccaaagt tataagttgt gccagacaac tggatagaac cagttgtcgc
    22021 taaggtacta ccgctagcaa acagatcgga caatttcgct gaagatgcaa tgccggcgtt
    22081 gtttgtagat aggttaccag tggcgtccag gtacgcggct ttaccaccga tggtcacatc
    22141 gccattagca tctacatcaa acttcacatc accagtacta cgagtataaa cacctgatgc
    22201 agtagtgcca gccgctggtt tcagagtatt cgcaaagtta acaacatcgc catctgcaac
    22261 tgttgcttga gtggtgaagt tccctttagc cgcatcataa gtatagatcg cagcactcga
    22321 gccagtagta gtaactgtat ctccggtttt caggcgagac agtgcatcgc tagcgctgag
    22381 tgctgtattg tttgtggtca cagcataagg acctgttccc gttgcaccag cagcggtcag
    22441 atcgctgact gtagcagctt tgttcgcaat agtgcctttg ccattcacgt taaaaccatt
    22501 cagccccagc gtatctgagt caattttctt cagatcaatc gtgatagtct ggccgtcatt
    22561 cgcaccaacc tgaattttca ttgaaccgtc tttcgccagt acgttcacgc cgttgaactg
    22621 ggtctggcca gatacgcggt caatttcgtc cagacgggat ttgatttcgt cctgaatgga
    22681 gtccagatcc gaatcggagt tagtcccggt agaagcctga accgtcagtt caagaatacg
    22741 ctgtaagttg ttgttgattt cggacagcgc gccttcagtg gtctgcgcaa cggagatacc
    22801 gtcgttggcg ttacgggccg cctgagtcag gcctttaata ttagaagtaa aacggttagc
    22861 aatcgcctga cctgcggcgt catccttcgc gctgttaata cgcaagccag aagacagacg
    22921 ctcgatagaa ctcgacagcg cagactggtt cttgttgata ttattttgag tgatcagcga
    22981 gaggctgttg gtattaatga cttgtgccat gattcgttat cctatattgc aagtcgttga
    23041 ttacgtattg ggtttccacc cgtcggctca atcgccgtca accctgttat cgtctgtcgt
    23101 aaaacaacct ttagaatttt tttcacaaac agccattttt tgttagtcgc cgaaatactc
    23161 ttttctctgc cccttattcc cgctattaaa aaaaacaatt aaacgtaaac tttgcgcaat
    23221 tcaggccaat aaccccggta ttcgttttac gtgtcgaaag ataaaaggaa atcgcatggc
    23281 aagtatttca tcgctgggag tcgggtcagg tctggattta agttcaatcc ttgatagcct
    23341 caccgccgcg caaaaagcga cgctaacccc tatttcaaat cagcaatcgt cgtttaccgc
    23401 taaacttagc gcctacggta cgctgaaaag cgcgctgacg actttccaga ccgccaatac
    23461 tgcattgtct aaagccgatc ttttttccgc caccagcact accagcagca ccaccgcgtt
    23521 cagtgccacc actgcgggta acgccatcgc cgggaaatac accatcagcg tcacccatct
    23581 ggcgcaggcg caaaccctga ccacgcgcac caccagagat gatacgaaaa cggcgatcgc
    23641 caccagcgac agcaaactca ccattcaaca aggcggcgac aaagatccga ttaccattga
    23701 tatcagcgcg gctaactcat cgttaagcgg gatccgtgat gctatcaaca acgcaaaagc
    23761 gggcgtaagt gcgagcatca ttaacgtggg taacggtgaa tatcgtctgt cagtcacatc
    23821 aaatgacacc ggccttgata atgcgatgac actctcggtc agcggtgatg atgcgctaca
    23881 aagttttatg ggctatgacg ccagtgccag cagcaacggt atggaggtct cggtcgccgc
    23941 caagaatgcg cagctgacgg tcaacaacgt cgccattgag aacagcagca acaccatcag
    24001 cgacgcgctg gaaaacatca ccctgaacct gaacgatgtc accacgggca accagacgct
    24061 aaccatcact caggacacct ccaaagcgca aacggcgatt aaagactggg tgaatgccta
    24121 taactcgtta atagatacct tcagtagcct gaccaaatac accgccgtag atgcgggagc
    24181 tgatagccag agttctagca atggcgcact gctcggcgac tccacgctgc ggacgattca
    24241 gacgcagttg aagtcgatgc tgagtaatac cgtcagttct tccagctata aaacgctggc
    24301 gcagattggt atcacgaccg atcccagcga tggcaaactg gaactggatg ccgacaaact
    24361 caccgctgca ctgaaaaaag atgccagcgg cgtaggtgca ttgattgttg gcgatggtaa
    24421 aaaaaccggc atcacgacca ccatcggcag caacctgacc agttggcttt cgacaacggg
    24481 cattattaaa gccgctaccg atggcgttag taagaccctg aataagttaa ctaaagacta
    24541 caacgccgcc agcgatcgca ttgatgcgca ggtcgcgcgc tacaaaaaac aatttaccca
    24601 actggacgtt ttaatgacct cgttaaacag caccagcagc tacttaacgc agcagttcga
    24661 aaacaacagt aattccaagt aatcattatt catcgggaga caggtcatgt acgcggcaaa
    24721 aggcacccag gcctatgcac aaattggcgt cgaaagcgcc gtaatgagcg ccagccagca
    24781 gcagctggtc accatgctat ttgatggagt gctgagcgca ctggttagag cgcgcctgtt
    24841 tatgcaggac aacaatcagc aaggcaaagg cgtctctttg tcaaaagcga tcaacatcat
    24901 tgagaacgga ctgcgggtga gtcttgatga agagagcaaa gacgaactaa cccaaaactt
    24961 gattgctctt tatagctata tggtcaggcg cttgctgcaa gccaatttac gcaacgatgt
    25021 ctccgcagtc gaagaagtgg aagcattaat gcgcaatatt gccgatgcct ggaaagagtc
    25081 gttactctcc ccttctttga ttcaggaccc agtctgatga accatgcacc gcatttgtat
    25141 ttcgcctggc aacaactcgt cgaaaaaagc cagctcatgt tacgcctggc aacggaagaa
    25201 caatgggacg aactcatcgc cagcgaaatg gcgtatgtga atgcggtgca ggagtatagc
    25261 acacctgact gaagaggttg ccccgtccac cacgatgcag gagcagctcc gcccgatgct
    25321 gcgcctgatt ctcgacaacg aaagcaaggt aaagcagtta ttacagattc gtatggatga
    25381 actggcgaaa ctggtcggtc agtcatcggt gcaaaaatcg gtgttaagtg cctatggcga
    25441 tcagggcggc tttgtgctgg ctccgcaaga taacttctcg tgaatcttaa cgagctaatg
    25501 gttcgcgaat aatccgatta cggctacgct tctaatgttc cccttgaatg gagtcgaaga
    25561 atgcgtaatc ccacgctgtt acaatgtttt cactggtatt acccggaagg cggtaagctc
    25621 tggcctgaac tggccgagcg cgccgacggt tttaatgata ttggtatcaa tatggtctgg
    25681 ttgccgcccg cctataaagg cgcatcgggc gggtattcgg tcggctacga ctcctataat
    25741 ttatttgatt taggcgagtt tgatcagaaa ggcagcatcc ctactaaata tggcgataaa
    25801 gtacaattgc tggccgccat tgacgccctg aaacgtaatg acattgcggt gctgttggac
    25861 gtggtagtca accacaaaat gggcgcggat gaaaaagaag ctattcgcgt gcagcgtgta
    25921 aatgctgacg accgtacgca aattgatgaa gaaatcattg agtgcgaagg ctggacgcgt
    25981 tacaccttcc ccgcccgtgc cgggcaatac tcacagttta tctgggattt caaatgtttt
    26041 agcggtatcg accatatcga aaaccctgat gaagatggca tatttaaaat tgttaacgac
    26101 tacaccggcg aaggctggaa cgatcaggtt gatgatgaat taggtaattt cgattatctg
    26161 atgggcgaga atatcgattt tcgcaatcat gccgtgacgg aagagattaa atactgggcg
    26221 cgctgggtga tggaacaaac gcaatgcgac ggttttcgtc ttgatgcggt caaacatatt
    26281 ccggcgtggt tttataaaga gtggatcgaa cacgtacagg aagttgcgcc aaagccgctg
    26341 tttattgtgg cggagtactg gtcgcatgaa gtcgataaac tgcaaacgta tattgatcag
    26401 gtggaaggca aaaccatgct gttcgatgcg ccgctgcaga tgaaattcca tgaagcatcg
    26461 cgcatggggc gcgactacga catgacgcag attttcacgg gtacattagt ggaagccgat
    26521 cctttccacg ccgtgacgct cgttgccaat cacgacaccc aaccgttgca agccctcgaa
    26581 gcgccggtcg aaccgtggtt taaaccgctg gcgtatgcct taattttgtt gcgggaaaat
    26641 ggcgttcctt cggtattcta tccggacctc tacggtgcgc attacgaaga tgtcggtggt
    26701 gacgggcaaa cctatccgat agatatgcca ataatcgaac agcttgatga gttaattctc
    26761 gcccgtcagc gtttcgccca cggtgtacag acgttatttt tcgaccatcc gaactgcatt
    26821 gcctttagcc gcagtggcac cgacgaatat cccggctgcg tggtggtcat gtcgaacggg
    26881 gatgatggcg aaaaaaccat tcatctggga gagaattacg gcaataaaac ctggcgtgat
    26941 tttctgggga accggcaaga gagcgtaata accgacgaac acggcgaagc aaccttcttt
    27001 tgcaacggcg gcagcgtcag cgtgtgggtt atcgaagagg tgatttaaat tcatccccgg
    27061 cggcaagccg gggagatttc attacggcag tggcgtcggt aacggcgctt tatccagcgc
    27121 ggcggcacac tctgccgtcg ggcgatccac acgctccatc gtcataccat cgtactcaat
    27181 ggtgttaccg tcacgctcaa cctcgtacag ctcacgtttt acggtaacgt tagtgagatc
    27241 atcagacatc aatgccaact tacccggcac agcaatcacc cgctgccact gacggcaatc
    27301 cagagtatca ccctctttag tgacaatcag gctgcctatc gcttccggac tgaccagcgc
    27361 acgttgcggc cctttggtct gccagtagcc cgccagccag tccggcgcgg gggttttcac
    27421 gacattgtta tagttttcga cttcggcaca gcccgccagc aacatgagcg cgcctgcaat
    27481 tgcgagtttt ttcatcattc gtcctgcatg agaagaaaag aggattgtgg cattaaagcc
    27541 ctgatgtcgc cagcctttcc aggttcagag agaaatttga tctaactatt atttttgtga
    27601 attattaccc cgaaaataaa tttgcatgat gtatgattcg cgactcttgt ttcaaacctt
    27661 ctgagttcag aggctacatt catgtcatgg cagcaattca aacacgcctg gttgattaaa
    27721 ttctgggcac ccatccctgc ggtcatcgcg gcgggtattc tctccactta ctattttggc
    27781 attactggca ccttttgggc tgtcacgggt gaatttaccc gttggggcgg ccagctcctg
    27841 cagctgtttg gcgtccatgc tgaagagtgg ggttatttta aaattatcca tctggaagga
    27901 tcgccattaa cccgcatcga cgggatgatg atcctcggca tgtttggcgg ctgctttgcc
    27961 gcagcgctgt gggccaacaa tgtcaaactg cgcatgccac gcagccgtat ccgcattatg
    28021 caggccatta ttggcggtat tatcgctggt tttggcgcgc gtctggcaat gggctgtaac
    28081 ctggcggcgt tctttaccgg tattcctcag ttctcgctgc atgcctggtt ctttgccatc
    28141 gccactgcca ttggttcatg gtttggcgca cgctttaccc tgctgcccat cttccgtatt
    28201 cccgtgaaaa tgcagaaagt ttctgccgcc tcaccgctga cgcaaaaacc ggatcaggcg
    28261 cggcgtcgtt ttcgtctcgg gatgctggtc tttttcggta tgctgggctg ggcgctgctc
    28321 acggcgatga accaaccaaa actggggctg gcaatgctgt ttggcgtcgg ctttggttta
    28381 ctgattgaac gtgcgcaaat ctgctttact tcggcgttcc gcgatatgtg gatcaccgga
    28441 cgtacccata tggcgaaagc aatcattatc ggtatggcgg tgagtgccat cgggatcttc
    28501 agttacgtac agttaggcgt tgaacccaaa atcatgtggg cgggaccaaa cgcggtaatt
    28561 ggtggtttac tgtttggttt tggcatcgtg ctggcaggcg gctgcgaaac cggctggatg
    28621 taccgcgcgg tagaaggcca ggtgcactac tggtgggtcg gtctgggcaa tgtgatcggc
    28681 tcgacgattc tggcgtatta ctgggatgat ttcgctccgg cgctggccac cgactgggac
    28741 aaaatcaacc tgctgaaaac ctttggcccg atgggtggcc tgctggtgac atatttgctg
    28801 ttgtttactg cgctgatgtt gattatcggc tgggaaaaac gcttcttccg ccgtgcggca
    28861 ccgcagactg ctaaggagat cgcatgaaaa atatcgttcc tgattaccgc cttgatatgg
    28921 tgggtgaacc ctgcccttat ccggcagtcg caacccttga ggcgatgccg cagttaaaaa
    28981 aaggggaaat cctggaagtg gtgagcgact gtccacagtc gatcaataat attccactgg
    29041 atgcgcgtaa tcacggctat acggtgcggg atattcagca agacgggccg accattcgtt
    29101 atttaattca gaagtaatcc ctcattcccg ctgtggccca cagcgggaac atcgttgcct
    29161 ctgacacata gattttaccc gccccctctc ctattctttt cagtatgatc tcaggaggtt
    29221 tctatgtgtg gacgctttgc ccaatcccaa acgcgtgaag attaccttgc gcttctcgcg
    29281 gaagatattg aacgcgatat tccctacgat cccgaaccca ttggcagata caacgtcgcg
    29341 ccgggaacca aagttcttct gctcagtgaa cgtgatgaac accttcatct ggatccggtt
    29401 ttctggggat atgctcccgg atggtgggat aaaccgccgc tgattaacgc ccgcgtagaa
    29461 actgccgcaa ccagtcgcat gtttaaaccg ctctggcaac atggtcgggc aatctgtttt
    29521 gccgatggct ggtttgagtg gaaaaaagaa ggcgacaaaa aacagccttt ttttatctat
    29581 cgtgctgatg gacaacctat ttttatggcc gcgataggta gcacaccatt tgagcatggt
    29641 gacgaagccg aaggattttt aattgtcact gctgcagcag accagggtct ggtagacatt
    29701 catgaccgcc gcccgctggt tctgtcgcca gaagctgcac aggaatggat gcggcaagag
    29761 attggcggta aagaagcatc agaaattgct accaacggct gtgtgccagc aaaccagttc
    29821 acctggcacc cggtatcgcg cgcggtaggt aatgtcaaaa accagggcgc ggagttaatt
    29881 caacctgttt gttgacatcc tccacgccct gaaggacgag gctccctgct acgttcaggc
    29941 tgtcgcctga atcatttcgg tgggttcctg cttcaacggg cggcctgact gcaccatctc
    30001 tccacaggca agaacggcgt gccccgccgc taaaatgtta cgagcgccat ttacatcggc
    30061 gttcgctgta tatccacata cctggcatct gaatttactt tgtgacaggc ggttttcttt
    30121 cgctgtatga ccacagcacg cgcaacgctg gcttgtgcac gctggcggaa cagcaaacac
    30181 ctgaccgcca cgccagagct gcttgtactc aagctggcgg cgcatttcat accagccctg
    30241 atccagtatc gaacggttta aacctgattt tgcccggaca ttgcgccccg gc
//
LOCUS       DAJVSY010000032        29253 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.032, whole genome shotgun sequence.
ACCESSION   DAJVSY010000032 DAJVSY010000000
VERSION     DAJVSY010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29253)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29253)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29253
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.032"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..154
                     /locus_tag="OQQ19_001321"
     CDS             <1..154
                     /locus_tag="OQQ19_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2135 domain-containing protein"
                     /protein_id="HCS1803005.1"
                     /translation="NYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTL
                     VKSFDW"
     gene            429..3278
                     /gene="rcsC"
                     /locus_tag="OQQ19_001322"
     CDS             429..3278
                     /gene="rcsC"
                     /locus_tag="OQQ19_001322"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416722.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     RcsC"
                     /protein_id="HCS1803006.1"
                     /translation="MKYLASFRTTLKASRYMFRALALVLWLLIAFSSVFYIVNALHQR
                     ESEIRQEFNLSSDQAQRFIQRTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAF
                     EPLFADSDCSAMSNTWRGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGL
                     RDMPVERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANR
                     LQALLGVEQTIRMENFFLPGTLPMGVTILDENGHTLISLTGPESKIKGEPRWMQERSW
                     FGYTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLA
                     RMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLN
                     MLTHEDRQRLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRV
                     KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLV
                     TAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG
                     LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDT
                     GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS
                     QFTVRIPLYGAQYPQKKGVEGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQE
                     PTPEDVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGEWVHSVAAPHELPALLARI
                     YLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTAND
                     GVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRC
                     LESGMDSCLSKPVTLDVIKQTLTVYAERVRKSRES"
     gene            complement(3478..4128)
                     /gene="rcsB"
                     /locus_tag="OQQ19_001323"
     CDS             complement(3478..4128)
                     /gene="rcsB"
                     /locus_tag="OQQ19_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator RcsB"
                     /protein_id="HCS1803007.1"
                     /translation="MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINN
                     LPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLD
                     IEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR
                     LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNYLSSVTLSPADKD"
     gene            complement(4145..6817)
                     /gene="rcsD"
                     /locus_tag="OQQ19_001324"
     CDS             complement(4145..6817)
                     /gene="rcsD"
                     /locus_tag="OQQ19_001324"
                     /EC_number="2.7.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase RcsD"
                     /protein_id="HCS1803008.1"
                     /translation="MRQKETTATTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNA
                     WLKDKSYQIVDITHAIQKRVNTWRYVTWQIYDNIAATTSPSSGEGLQETRLKQDVYYL
                     EKPRRKTEALIFGSHDNSTLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLVLIST
                     LPLKDLTSGFKESTISDIVDSRRAEMLQQANALDERESFSNMRRLAWQNGHYFTLRTT
                     FNQPGHLATVVAFDLPINDLIPPGMPLDSFRLEPDATATGDNDNEKEGTDSVSIHFNS
                     TKIEISSALNSTDMRLVWQVPYGTLLLDTLQNILLPLLLNIGLLALALFGYTTFRHFS
                     SRSTESLPSTAVNNELRILRAINEEIVSLLPLGLLVHDQESNRTVISNKIADHLLPHL
                     NLQNITTMAEQHQGIIQATINNELYEIRMFRSQVAPRTQIFIIRDQDREVLVNKKLKQ
                     AQRLYEKNQQGRMTFMKNIGDALKEPAQSLAESAAKLNAPESKQLANQADVLVRLVDE
                     IQLANMLADDSWKSETVLFSVQDLIDEVVPSVLPAIKRKGLQLLINNHLKAHDMRRGD
                     RDALRRILLLLMQYAVTSTQLGKITLEVDQDESSEDRLTFRILDTGEGVSIHEMDNLH
                     FPFINQPQNDRYGKADPLAFWLSDQLARKLGGHLNIKTRDGLGTRYSVHIKMLAADPE
                     VEEEEERLLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDERLISQDYDIFLTDNP
                     SNLTASGLLLSDDESGVREIGPGQLCVNFNMSNAMQEAVLQLIEVQLAQEEVTESPLG
                     GDENAQLHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPG
                     KQLCETLEHLIREKDVPGIEKYISDIDSYVKSLL"
     gene            7556..8686
                     /gene="ompC"
                     /locus_tag="OQQ19_001325"
     CDS             7556..8686
                     /gene="ompC"
                     /locus_tag="OQQ19_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpC"
                     /protein_id="HCS1803009.1"
                     /translation="MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYF
                     SDNKSEDGDQTYVRLGFKGETQVTDQLTGYGQWEYQIQGNTSEDNKENSWTRVAFAGL
                     KFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFG
                     LVDGLNFAVQYQGKNGSVSGEGMTNNGRGALRQNGDGVGGSITYDYEGFGIGAAVSSS
                     KRTDDQNGSYISNGVVRNYIGTGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSL
                     GWANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKNLGVINSRNYDDEDILKYVDVGATY
                     YFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF"
     gene            8798..9853
                     /gene="apbE"
                     /locus_tag="OQQ19_001326"
     CDS             8798..9853
                     /gene="apbE"
                     /locus_tag="OQQ19_001326"
                     /EC_number="2.7.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase ApbE"
                     /protein_id="HCS1803010.1"
                     /translation="MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGT
                     FWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEA
                     MAEIVTTSLRIGAKTDGAMDITVGPLVNLWGFGPEQQPVQIPSQEQIDEMKAKTGLQH
                     LTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSR
                     GINGEGLPWRVAIQKPTDKENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQ
                     TGRPIEHNLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSF
                     KTWMSPQFKSFLVSEKN"
     gene            9927..10979
                     /gene="ada"
                     /locus_tag="OQQ19_001327"
     CDS             9927..10979
                     /gene="ada"
                     /locus_tag="OQQ19_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-binding transcriptional
                     regulator/O6-methylguanine-DNA methyltransferase Ada"
                     /protein_id="HCS1803011.1"
                     /translation="MKNATCLTDDQRWQSVLARDPNADGEFVFAVRTTGIFCRPSCRA
                     RHALRENVSFYANASEALAAGFRPCKRCQPDKANAQQHRLDKITHACRLLEQETPVTL
                     EALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRARRLRESLAKGESVTTSILNAGFP
                     DSSSYYRKADETLGMTAKQFRHGGENLAVRYALADCALGRCLVAESERGICAILLGDD
                     DATLISELQQMFPAADNAPADLTFQQHVREVIASLNQRDTPLTLPLDIRGTAFQQQVW
                     QALRTIPCGETVLANAIGKPKAVRAVASACAANKLAIVIPCHRVVGGDGTLSGYRWGV
                     SRKAQLLRREAENEER"
     gene            10979..11629
                     /gene="alkB"
                     /locus_tag="OQQ19_001328"
     CDS             10979..11629
                     /gene="alkB"
                     /locus_tag="OQQ19_001328"
                     /EC_number="1.14.11.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA oxidative demethylase AlkB"
                     /protein_id="HCS1803012.1"
                     /translation="MLDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQS
                     PFRQMVTPGGYTMSVAMTNCGHLGWTIHRQGYLYSPIDPQTNKPWPAMPQSFHDLCQR
                     AATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLK
                     RNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFYPLTTDCRYNLTFRQAGKKE"
     gene            11705..13348
                     /gene="yojI"
                     /locus_tag="OQQ19_001329"
     CDS             11705..13348
                     /gene="yojI"
                     /locus_tag="OQQ19_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin J25 efflux ABC transporter YojI"
                     /protein_id="HCS1803013.1"
                     /translation="MELLVLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIEMA
                     DTSLLVLPEFLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQL
                     GSASLLAGLTSDVRNITIAFVRLPELVQGIILTIGSAAYLWMLSGKMLLVTAIWMAIT
                     IWGGFVLVARVYKHMATLRETEDKLYTDFQTVLEGRKELTLNRERAEYVFNNLYIPDA
                     QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFWMANSLGWADTNVAATYSLTLLFLR
                     TPLLSAVGALPTLLMAQVAFNKLNKFALAPFKAEFPRPQAFPNWQTLELRNVTFSYQD
                     NAFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSGEQP
                     EDYRKLFSAVFTDVWLFDQLLGPEGKPANPQLVEKWLAQLKMAHKLELSNGRIVNLKL
                     SKGQKKRVALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPLMQEMGKTIFAISH
                     DDHYFIHADRLLEMRNGQLSELTGEERDAASRDAVARTA"
     gene            13566..15212
                     /gene="mqo"
                     /locus_tag="OQQ19_001330"
     CDS             13566..15212
                     /gene="mqo"
                     /locus_tag="OQQ19_001330"
                     /EC_number="1.1.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase (quinone)"
                     /protein_id="HCS1803014.1"
                     /translation="MKKVTAMLFSMAVGLNAVSMAAKAKASEEQETDVLLIGGGIMSA
                     TLGTYLRELEPEWSMTMLERLEGVAQESSNGWNNAGTGHSALMELNYTPQNADGSISI
                     EKAVAINEAFQISRQFWAHQVERGVLRTPRSFINTVPHMSFVWGEDNVNFLRARYAAL
                     QQSSLFRGMRYSEDHAQIKEWAPLVMEGRDPQQKVAATRTEIGTDVNYGEITRQLIAS
                     LQKKSNFSLQLSSEVRALKRNDDNTWTVTVADLKNGTAQNIRAKFVFIGAGGAALKLL
                     QESGIPEAKDYAGFPVGGQFLVSENPDVVNHHLAKVYGKASVGAPPMSVPHIDTRVLD
                     GKRVVLFGPFATFSTKFLKNGSLWDLMSSTTTSNVMPMMHVGLDNFDLVKYLVSQVML
                     SEEDRFEALKEYYPQAKKEDWRLWQAGQRVQIIKRDADKGGVLRLGTEVVSDQQGTIA
                     ALLGASPGASTAAPIMLDLLEKVFGDRVSSPQWQATLKAIVPSYGRKLNGDVAATERE
                     LQYTSEVLGLKYDKPQAADSTPKPQLKPQPVQKEVADIAL"
     gene            complement(15362..15850)
                     /gene="eco"
                     /locus_tag="OQQ19_001331"
     CDS             complement(15362..15850)
                     /gene="eco"
                     /locus_tag="OQQ19_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease inhibitor ecotin"
                     /protein_id="HCS1803015.1"
                     /translation="MKTILPAVLFAAFATTSAWAAESVQPLEKIAPYPQAEKGMKRQV
                     IQLTPQEDESTLKVELLIGQTLEVDCNLHRLGGKLESKTLEGWGYDYYVFDKVSSPVS
                     TMMACPDGKKEKKFVTAYLGDAGMLRYNSKLPIVVYTPDNVDVKYRVWKAEEKIDNAE
                     VR"
     gene            complement(15985..16149)
                     /locus_tag="OQQ19_001332"
     CDS             complement(15985..16149)
                     /locus_tag="OQQ19_001332"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803016.1"
                     /translation="MHTPIGVKPVAGSKEWREAWQKRAFAHISNGYKHIYIAINSPEI
                     FLLVCSLIRI"
     gene            16258..16752
                     /gene="napF"
                     /locus_tag="OQQ19_001333"
     CDS             16258..16752
                     /gene="napF"
                     /locus_tag="OQQ19_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapF"
                     /protein_id="HCS1803017.1"
                     /translation="MKIDASRRGILTGRWRKASNGIRPPWSGDESHFLTHCTRCDACI
                     NACENNILQRGAGGYPSVNFKNNECSFCYACAQACPESLFSPRHTRAWDLQFTIGDAC
                     LAYQSVECRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAEY
                     LHAH"
     gene            16742..17005
                     /gene="napD"
                     /locus_tag="OQQ19_001334"
     CDS             16742..17005
                     /gene="napD"
                     /locus_tag="OQQ19_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HCS1803018.1"
                     /translation="MHTNWQVCSLVVQAKSERISDISTQLNAFPGCEVAVSDAPSGQL
                     IVVVEAEDSETLIQTIESVRNVEGVLAVSLVYHQQEEQGEETP"
     gene            17002..19488
                     /gene="napA"
                     /locus_tag="OQQ19_001335"
     CDS             17002..19488
                     /gene="napA"
                     /locus_tag="OQQ19_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HCS1803019.1"
                     /translation="MKLSRRSFMKANAVAAAAAAAGLSVPGVARAVVGQQEAIKWDKA
                     PCRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLL
                     RMKNGKYDKEGEFTLITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAAS
                     KLFKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAE
                     MHPILWSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYII
                     QNNAINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVA
                     EYTLEKTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHL
                     LTGKISQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPS
                     GTIPAKIGLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVS
                     DPYPTVSALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFS
                     RRFKTEEVWPEDLLAKKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFY
                     LQKGLFEEYAWFGRGHGHDLAPFDDYHKARGLRWPVVNGKETQWRYSEGNDPYVKAGE
                     GYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRA
                     FPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGLVYMPFFDAA
                     QLVNKLTQDATDPLSKETDFKKCAVKLEKV"
     gene            19495..20190
                     /gene="napG"
                     /locus_tag="OQQ19_001336"
     CDS             19495..20190
                     /gene="napG"
                     /locus_tag="OQQ19_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HCS1803020.1"
                     /translation="MSRSAKPQNGRRRFLRDVVRTAGGLAAVGVALGLQQQTARASGV
                     RLRPPGAINENAFASACVRCGQCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMC
                     EDIPCAKVCPSGALDREIESIDDARMGLAVLVDQENCLNFQGLRCDVCYRECPKIDEA
                     ITLELERNTRTGKHARFLPTVHRDACTGCGKCEKVCVLEQPAIKVLPLSLAKGELGHH
                     YRFGWLEGNNGKS"
     gene            20177..21040
                     /gene="napH"
                     /locus_tag="OQQ19_001337"
     CDS             20177..21040
                     /gene="napH"
                     /locus_tag="OQQ19_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HCS1803021.1"
                     /translation="MANRKRDAGREALEKKGWWRSHRWLVLRRLCQFFVLGMFLSGPW
                     FGVWILHGNYSSSLLFDTVPLTDPLMTLQSLASGHLPATVALTGAVIITVLYALAGKR
                     LFCSWVCPLNPITDLANWLRRRFDLNQSATIPRHIRYVLLVVILLGSALTGTLIWEWI
                     NPVSLMGRSLVMGFGSGALLILALFLFDLLVVEHGWCGHICPVGALYGVLGSKGVITV
                     AATDRQKCNRCMDCFHVCPEPRVLRAPVLDEQSPVQVTSRDCMTCGRCVDVCSEDVFT
                     ITTRWSSGAKS"
     gene            21037..21486
                     /gene="napB"
                     /locus_tag="OQQ19_001338"
     CDS             21037..21486
                     /gene="napB"
                     /locus_tag="OQQ19_001338"
                     /EC_number="1.9.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311119.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HCS1803022.1"
                     /translation="MKSHDLKKALCQWTAMLALVVSGAVWAANGVDFSQSPEVSGTQE
                     GAIRMPKEQERMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISP
                     THFMDSDGKVGAEVAPRRYFCLQCHVPQADTAPIVGNTFTPSKGYGK"
     gene            21496..22098
                     /gene="napC"
                     /locus_tag="OQQ19_001339"
     CDS             21496..22098
                     /gene="napC"
                     /locus_tag="OQQ19_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type protein NapC"
                     /protein_id="HCS1803023.1"
                     /translation="MGNSDRKPGLIKRLWKWWRTPSRLALGTLLLIGFVGGIVFWGGF
                     NTGMEKANTEEFCISCHEMRNTVYQEYMDSVHYNNRSGVRATCPDCHVPHEFVPKMIR
                     KLKASKELYGKIFGVIDTPQKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFEYMDTTA
                     QKSVAAKMHDQAVKDGQTCIDCHKGIAHKLPDMREVEPGF"
     gene            22117..22734
                     /gene="ccmA"
                     /locus_tag="OQQ19_001340"
     CDS             22117..22734
                     /gene="ccmA"
                     /locus_tag="OQQ19_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001300065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HCS1803024.1"
                     /translation="MLEARELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLL
                     RLLTGLSRPDAGEVLWQGQPLHQVRDSYHQNLLWIGHQPGIKTRLTALENLHFYHRDG
                     DTAQCLEALAQAGLAGFEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVN
                     GVDRLTQRMAQHTEQGGIVILTTHQPLNVAESKIRRISLTQTRAA"
     gene            22731..23393
                     /gene="ccmB"
                     /locus_tag="OQQ19_001341"
     CDS             22731..23393
                     /gene="ccmB"
                     /locus_tag="OQQ19_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HCS1803025.1"
                     /translation="MMFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQ
                     LLARIAPGIIWVAALLSSLLALERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWM
                     VTGLPLLILSPLVAMLLGMDVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVL
                     LSILVLPLTIPLLIFATAAMDAASMHLPVDGYLAILGALLAGTATLSPFATAAALRIS
                     IQ"
     gene            23435..24172
                     /gene="ccmC"
                     /locus_tag="OQQ19_001342"
     CDS             23435..24172
                     /gene="ccmC"
                     /locus_tag="OQQ19_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmC"
                     /protein_id="HCS1803026.1"
                     /translation="MWKTLHQLAIPPRLYQICGWFIPWLAIASVVVLTVGWIWGFGFA
                     PADYQQGNSYRIIYLHVPAAIWSMGIYASMAVAAFIGLVWQMKMANLAVAAMAPIGAV
                     FTFIALVTGSAWGKPMWGTWWVWDARLTSELVLLFLYVGVIALWHAFDDRRLAGRAAG
                     ILVLIGVVNLPIIHYSVEWWNTLHQGSTRMQQSIDPAMRSPLRWSIFGFLLLSATLTL
                     MRMRNLILLMEKRRPWVSELILKRGRK"
     gene            24169..24378
                     /gene="ccmD"
                     /locus_tag="OQQ19_001343"
     CDS             24169..24378
                     /gene="ccmD"
                     /locus_tag="OQQ19_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HCS1803027.1"
                     /translation="MTLAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVMQHR
                     AILCGVEQQRAREARLRAAQQQEAA"
     gene            24375..24854
                     /gene="ccmE"
                     /locus_tag="OQQ19_001344"
     CDS             24375..24854
                     /gene="ccmE"
                     /locus_tag="OQQ19_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HCS1803028.1"
                     /translation="MNIRRKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEIL
                     YGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDL
                     FREGQGVVVQGELEKGNHILAKEVLAKHDENYTPPEVEKAMEANHRRPASVYKDPAS"
     gene            24851..26794
                     /gene="ccmF"
                     /locus_tag="OQQ19_001345"
     CDS             24851..26794
                     /gene="ccmF"
                     /locus_tag="OQQ19_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis heme lyase CcmF"
                     /protein_id="HCS1803029.1"
                     /translation="MMPEIGNGLLCLALGIALLLSVYPLWGVARGDARMMASSRLFAW
                     LLFMSVAGAFLVLVNAFVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLL
                     MSGWTFAVAIFSQRIPLDIVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRD
                     LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIF
                     LTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWT
                     LLLAISAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVIGGSLLLFAARG
                     HKVRSRVNNALWSRESLLLANNVLLVAAMLVVLLGTLLPLVHKQLGLGSISIGEPFFN
                     TMFTWLMVPFALLLGVGPLVRWGRDRPRKIRNLLIIAFISTLVLSLLLPWLFESKVVA
                     MTVLGLAMACWIAVLAIAEAALRISRGTKTTFSYWGMVAAHLGLAVTIVGIAFSQNYS
                     VERDVRMKSGDSVDIHEYRFTFRDVKEVTGPNWRGGVATIGVTREGKPETVLYAEKRY
                     YNTAGSMMTEAAIDGGITRDLYAALGEELENGAWAVRLYYKPFVRWIWAGGLMMALGG
                     LLCLFDPRYRKRVSPQKTAPEAV"
     gene            26791..27348
                     /gene="dsbE"
                     /locus_tag="OQQ19_001346"
     CDS             26791..27348
                     /gene="dsbE"
                     /locus_tag="OQQ19_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbE"
                     /protein_id="HCS1803030.1"
                     /translation="MKRKVLLIPLIIFLAIAAALLWQLARNAEGDDPTNLESALIGKP
                     VPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVG
                     MNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHA
                     GDLNPRVWEEEIKPLWEKYSKEAAQ"
     gene            27345..28397
                     /gene="ccmH"
                     /locus_tag="OQQ19_001347"
     CDS             27345..28397
                     /gene="ccmH"
                     /locus_tag="OQQ19_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis thiol:disulfide
                     oxidoreductase CcmH"
                     /protein_id="HCS1803031.1"
                     /translation="MRFLLGVLMLMISGSALATIDVLQFKDEAQEQQFRQLTEELRCP
                     KCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNFVTYDPPLTPLTV
                     LLWVLPVVAIGIGGWVIYARSRRRVRVVPDAFPEQSVPEGKRAGYIVYLPGIVVALIV
                     AGVSYYQTGNYQQVKIWQQATAQAPALLDRALDPKADPLNEEEMSRLALGMRTQLQKN
                     PGDIEGWIMLGRVGMALGNASIATDAYATAYRLDPKNSDAALGYAEALTRSSDPNDNR
                     LGGELLRQLVRTDHSNIRVLSMYAFNAFEQQRFGEAVAAWEMMLKLLSANDTRRAVIE
                     RSIAQAMQHLSPQESK"
     gene            complement(28432..29079)
                     /gene="narP"
                     /locus_tag="OQQ19_001348"
     CDS             complement(28432..29079)
                     /gene="narP"
                     /locus_tag="OQQ19_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite response regulator protein NarP"
                     /protein_id="HCS1803032.1"
                     /translation="MPEATPFQVMIVDDHPLMRRGVRQLLELDPSFEVVAEAGDGASA
                     IDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALIDAG
                     ADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELD
                     VLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQQRGAQ"
BASE COUNT         6680 a         7221 c         8104 g         7248 t
ORIGIN      
        1 caactactat ggtgggcgca gcgaaacgga attaaccacc gcccaactga cgctgatcac
       61 cgatgaagga tcggtcaatg agaaacagga aacatttatt gtaccgatgc gtaatgctgg
      121 cgagctgacg ctggtgaaaa gttttgactg gtgatccatc ccttcacaca acctggctct
      181 ctcttttttc agataagact gctgggcgat ctgccgacgc caggatataa ccattaacaa
      241 gcgtcggcag attggtcatt tcttattttt cgtactgaga actgtccatc tactccggct
      301 ttcctggtta aggcaatggt ttctaagcga tacgcattat tgcaataatg acagaacatt
      361 gcggtaacac gcttttaccg ctaccttaac cacactccat cggtcacctg aggcggagct
      421 tcgccccttt gaaatacctt gcttcttttc gtacaaccct gaaagcctcg cgctacatgt
      481 tcagagcatt ggcgttagtg ctctggctgt tgattgcttt ttcatccgtt ttttacatcg
      541 ttaatgcgtt acatcagcga gaatcggaaa ttcgtcagga atttaatctg agttccgatc
      601 aggctcagcg ctttattcaa cgcacctctg atgtgatgaa agagctgaag tacatcgccg
      661 aaaatcgctt atcggcagaa aacggtgtgc tttccccgcg tggacgagaa acgcaggcgg
      721 atgtgcctgc gtttgaaccg ctgtttgccg actccgattg ttccgcaatg agtaacacct
      781 ggcgaggttc tctggagtca ttggcgtggt ttatgcgcta ctggcgcgat aatttttctg
      841 cggcttacga tctaaaccgg gtatttttaa tcggcagcga taacctctgc atggccaatt
      901 tcggtctgcg tgatatgcca gtggaacgcg ataccgcgtt gaaagctttg catgaacgca
      961 tcaataaata tcgaaatgca ccacaagatg atagcggcag taacctctac tggatcagcg
     1021 aaggtccgcg ccctggcgtc gggtattttt acgcgttgac gccagtttat ctggcgaacc
     1081 ggttgcaggc gcttttgggg gtcgagcaga ccatccggat ggagaacttt ttcttaccgg
     1141 gtacgttgcc gatgggggtt accattcttg atgaaaatgg tcataccctg atttcgctta
     1201 ccggaccaga aagtaaaatt aagggcgagc ctcgctggat gcaggaacgc tcctggtttg
     1261 gctatacgga agggttccgg gagctggtgc tgaagaaaaa tctgccaccc tcatcgctaa
     1321 gcatcgtgta ttcggtgccg gttgataagg tgctggaacg cattcgcatg ttgatcctta
     1381 acgcaatttt gctgaatgtg cttgccggag ctgcattgtt tactctcgca cggatgtacg
     1441 agcgacgtat tttcattccg gcggaaagcg acgccctgcg actggaagaa catgagcagt
     1501 tcaatcgcaa gattgtcgcc tccgcgccag tgggtatctg cattttgcgt accgctgatg
     1561 gcgtcaatat tttaagtaac gaactggcgc atacctatct caatatgctt acgcatgagg
     1621 accgccaacg actgacgcaa attatctgtg ggcagcaggt caattttgtt gatgtcctga
     1681 ccagcaacaa taccaatctg caaatcagct tcgtccattc gcgctatcgt aatgaaaacg
     1741 tggccatttg tgtgctggtg gatgtttctt cgcgcgtgaa gatggaagag tcgttgcagg
     1801 agatggcaca agcagcggaa caggcgagcc agtcaaaatc gatgttcctt gccaccgtca
     1861 gtcatgagct gcgaacgccg ctgtatggca ttatcggtaa cctggatctg ttgcaaacca
     1921 aagagttacc gaaaggcgtc gatcggctgg tgacggcaat gaacaactct tccagcctgt
     1981 tgttgaaaat tatcagcgat attctcgatt tctcgaagat tgaatcggaa cagttgaaga
     2041 tcgaaccgcg tgagttttca ccgcgtgaag tgatgaacca catcaccgcc aactatttac
     2101 cgctggtggt acgcaagcag ttaggcttgt actgctttat tgaaccggat gtgccagtgg
     2161 ccttaaatgg cgacccgatg cgtttacagc aggtcatctc caacctgttg agtaacgcca
     2221 taaaattcac cgataccggc tgtatagttt tgcatgtccg cgctgatggc gattatctct
     2281 ctatccgtgt tcgcgatacc ggcgtgggga ttccggcgaa agaagtggtg cgcttgtttg
     2341 atcccttctt ccaggtcgga acgggcgtac agcgaaactt ccaggggacc ggtctgggtc
     2401 tggcgatttg tgaaaaactg atcagcatga tggacggcga tatctcggta gattcagaac
     2461 cgggaatggg cagccagttt accgtgcgta ttccgttgta cggcgctcag tacccgcaga
     2521 aaaaaggcgt ggaagggttg agtggtaaac gctgctggct ggcggtccgc aatgcgtcgc
     2581 tctgtcagtt cctggaaact agtttgcagc gcagcggcat cgtcgttaca acatacgaag
     2641 ggcaggaacc gactcccgaa gatgtgttaa ttactgacga ggtagtgagt aaaaaatggc
     2701 agggtagagc ggtagtgacc ttctgtcgtc gccatattgg tattccgctg gagaaagcgc
     2761 caggggagtg ggtacacagt gtggctgccc cgcatgagct accggcattg ttggcgcgta
     2821 tttatttgat cgagatggag agcgacgatc ctgctaacgc tctgccgtcg acggacaaag
     2881 cggtcagcga taatgacgat atgatgattc tggtcgtgga tgatcatccg attaaccgac
     2941 gtctgctggc agatcagttg ggatcgttgg gctatcaatg taaaaccgcg aatgatggtg
     3001 tcgatgcgct taatgtactt agcaagaatc atattgatat cgtgcttagc gacgtcaaca
     3061 tgccaaatat ggatggttac cgcttgacgc aacgcattcg tcagttggga ctgacgttgc
     3121 cggtaatcgg agtaactgct aatgcgttgg ctgaagagaa gcagcggtgt ctggagtccg
     3181 gtatggacag ctgcctgtcg aagccggtaa cgctggatgt gataaaacag acgctgacgg
     3241 tatatgccga gagggtcagg aaatcgcggg aatcgtagga cggataaggt gtttatgtcg
     3301 catctggcat tcagtgcaaa tgccagatgc gacgctgacg cgtcttatct ggcctacttt
     3361 gatgtaatct gttgaaataa tgggaatcgt aggacgcata aggcgtttac gccgcatccg
     3421 gcaatcggtg caaatgccag ataagacact aacgcgtctt atctggccta caggtgatta
     3481 gtctttatct gccggactta acgtcactga agagagataa ttcagcaggg cgatatcgtt
     3541 ctcgacaccc agcttcatca tcgcagattt cttctggcta ctgatggttt taatactgcg
     3601 gttcagcttt ttagcgatct cggtcaccaa gaagccttcc gcaaacaggc gcagaacttc
     3661 actctctttt ggcgagagac gcttgtcacc gtaaccacca gcactgattt tttccaacag
     3721 gcgagaaacg ctttccgggg taaatttctt ccctttctgc agcgcggcga gagctttcgg
     3781 cagatcggtc ggtgcacctt gtttcagcac gatcccttcg atatccagat ccaataccgc
     3841 actaagaatc gccgggttgt tgttcatagt cagaacaatg atcgacaggc ttgggaaatg
     3901 gcgcttgatg tacttgatta aggtaatgcc atcgccgtac ttatcgccag gcatggagag
     3961 atcggtaatc aacacatgcg catccagttt cggcaggttg ttgatcagtg ctgtagagtc
     4021 ttcaaattcg ccgacaacat tcacccactc aatttgctca agtgatttgc gaataccgaa
     4081 caagactatc ggatggtcat cggcaataat tacgttcata ttgttcatgt aataggctac
     4141 cttgctacag caagctcttg acataactgt caatgtcgct gatgtatttt tctattcctg
     4201 gaacatcctt ctcacgaatc agatgttcca gcgtttcaca taactgcttg ccgggtacca
     4261 gatttagcat ggcaaatacg cctttaagac gatgagccgt ttgggctaac gcagcaaagt
     4321 cactggttgc tgcttcagta tacagcctct taacatcatc cggtactgtg tctacaaaga
     4381 gcgcataata gccgctggca tggagttgcg cattttcatc tccgcccaga ggcgattctg
     4441 tcacctcttc ctgcgccagt tgcacttcaa ttaattgtaa gaccgcttcc tgcatagcgt
     4501 tgctcatatt gaagttgacg cacaattgac caggcccaat ttcccgtacg ccagactcat
     4561 catcgcttaa aagcaagcca gaggcagtaa gattagacgg attatccgtt aaaaagatat
     4621 cataatcttg actaattaat ctttcatcgg gtgtgataca ggttgcaccc caattttcta
     4681 actggcgagt gacaatattc cgaatttctg ccgaagtaac atccaccatt acgcagacat
     4741 catccagtaa acgctcttct tcctcttcaa cttccgggtc agcggcgagc attttgatat
     4801 gcacagagta gcgtgtacca agcccatccc gcgttttgat gtttaaatga ccgcccagtt
     4861 tacgcgccag ttgatcgctc agccagaatg ccagcgggtc cgccttgcca tagcgatcgt
     4921 tttggggctg gttgataaac gggaagtgca aattatccat ttcatgaata cttacgcctt
     4981 ctcccgtgtc cagaatgcgg aatgtcaggc ggtcttcaga ggactcatcc tgatcaacct
     5041 caagggtgat ttttcccaat tgcgttgagg tcacggcata ttgcatcagt agcagcaaaa
     5101 tacgtcgtaa ggcatcgcga tcgccgcggc gcatatcgtg tgctttcaga tgattgttaa
     5161 tcagcagttg cagaccttta cgcttgatgg caggcaacac tgaaggcaca acttcatcaa
     5221 ttaaatcctg cacggagaac agcaccgtct cacttttcca gctatcgtcc gcaagcatgt
     5281 tcgctaactg tatttcatcg accagccgca ccagcacatc tgcctgattc gccagttgtt
     5341 tgctttccgg ggcgttgagt ttagccgcgc tctccgccag ggactgtgcg ggttctttca
     5401 gcgcatcgcc aatgtttttc ataaaggtca tccgcccctg ctggtttttc tcatacagac
     5461 gctgcgcctg cttgagtttc ttgtttacca gcacttcgcg atcctgatcg cgaataatga
     5521 aaatttgtgt gcgcggcgcg acctggctgc ggaacatgcg gatctcatac agctcgttat
     5581 tgatcgtcgc ctgaataatc ccctgatgct gttccgccat ggtggtgatg ttttgcagat
     5641 tcaaatgcgg cagcaaatga tcggcaattt tgttacttat gacagtgcgg ttcgattcct
     5701 gatcgtgaac cagcaggccg agcggcagca gtgagactat ctcttcatta attgcccgta
     5761 aaatgcgcaa ttcgttattg accgccgtgc tgggtagact ttctgtactg cggctggaga
     5821 aatggcggaa tgtggtatag ccaaataacg ccagcgccag caaaccgatg ttcagcagca
     5881 gtggcagcag aatgttttgc aacgtatcca gcaataaggt gccataagga acctgccaga
     5941 ccaggcgcat atcggtagag ttgagtgccg aggagatttc aatcttcgta ctgttaaagt
     6001 ggatactgac gctatccgtc ccttctttct cattatcatt gtctcccgtt gccgtcgcgt
     6061 ctggctcaag gcggaaactg tccagcggca tacccggtgg gatcaaatca ttaatcggta
     6121 gatcaaaagc tacgaccgtt gccagatgtc ccggctggtt gaacgtggta cgcaaggtaa
     6181 agtaatgacc gttctgccag gccaggcggc gcatgttaga aaaactttcg cgttcatcga
     6241 gggcgttggc ctgttgcaac atctctgcac gacgtgaatc aacaatgtcg ctgatggtcg
     6301 attctttaaa tccggaggtg agatctttga ggggcagggt tgagatcagc accagactgt
     6361 tatcctgacc attcaggtaa tacatcgacc acggtacatt ttctgcgccc cacaatgtgt
     6421 ccagataggt ggacatccgc tgagtcatct caagcgttga gttgtcgtga gagccaaaga
     6481 ttaacgcttc cgttttgcgg cgcggtttct ccagatagta gacatcctgt ttcaggcgcg
     6541 tctcttgtaa accttcgccg gaggaggggg aggttgtcgc ggcaatgttg tcgtagatct
     6601 gccaggtcac gtaacgccag gtattgacgc gcttttggat agcgtgggta atgtcgacaa
     6661 tctggtaact tttatctttc agccatgcgt taacggcgct ttgtaccatt acacccatcg
     6721 tcaccagtaa cacaatgatc aacagtaaaa agaagcgggt aatgctcccc ggtaggagtg
     6781 aaaagcgggt cgtggccgtt gtctctttct gacgcattcg tgtttatgac ctgttaaaac
     6841 ttcgcgaagt gatagggcag tataaagggt acagtgtgaa attccagact cttacctgat
     6901 tgatgattct ctattctccc gtgatattta tcatcctgca ttgggggaaa tagatgtaca
     6961 agcgccattt tgctgtacaa ataacctaca aaaagcccaa cgaaattaat tgcaaataaa
     7021 cgatgattgc tggaaattat gctgatgtta attatttgtg aaatagttaa caagcgttat
     7081 agtttttctg tggtagcaca gaataatgaa aagtgtgtaa agaagggtaa aaaaaaccgg
     7141 atgcgaggca tccggttgaa ataggggtaa acagacattc agaaatgaat gacggtaata
     7201 aataaagtta atgatgatag cgggagttat tctagttgcg agtgaaggtt ttgttttgac
     7261 attcagtgct gtcaaatact taagaataag ttattgattt taaccttgaa ttattattgc
     7321 ttgatgttag gtgcttattt cgccattcca caataatctt aaaaagttcc cttgtattta
     7381 cattttgaaa catctatagc gataaatgaa acatcttaaa agttttagta tcatattcgt
     7441 gttggattat tctgcatttt tggggagaat ggacttgccg actgattaat gagggttaat
     7501 cagtatgcag tggcataaaa aagcaaataa aggcatataa cagagggtta ataacatgaa
     7561 agttaaagta ctgtccctcc tggtcccagc tctgctggta gcaggcgcag caaacgctgc
     7621 tgaagtttac aacaaagacg gcaacaaatt agatctgtac ggtaaagtag acggcttgca
     7681 ctatttctct gacaacaagt cagaagacgg cgaccagacc tatgtacgtc ttggtttcaa
     7741 aggcgaaact caggttactg accagctgac cggttacggc cagtgggaat atcagatcca
     7801 gggcaatacc tctgaagaca acaaagaaaa ctcctggacc cgtgtggcat tcgcaggtct
     7861 gaaattccag gatgtaggtt ctttcgacta cggtcgtaac tacggcgttg tttacgacgt
     7921 aacttcctgg accgacgtac tgccagaatt cggtggcgac acctacggtt ctgacaactt
     7981 catgcagcag cgtggtaacg gcttcgcgac ctaccgtaac accgacttct tcggtctggt
     8041 tgacggtctg aactttgctg ttcagtacca gggcaaaaac ggtagcgtaa gcggcgaagg
     8101 catgaccaac aacggtcgtg gcgctctgcg tcagaacggc gacggtgtcg gcggttctat
     8161 cacttatgat tacgaaggct tcggtatcgg tgctgcagtt tccagctcca aacgtactga
     8221 tgatcaaaat ggtagctaca tcagcaatgg tgtagttcgt aactacatcg gtactggcga
     8281 ccgtgctgaa acctacactg gtggtctgaa atacgacgct aacaacatct acctggctgc
     8341 tcagtacacc cagacctaca acgcaactcg cgtaggttcc ctgggttggg cgaacaaagc
     8401 acagaacttc gaagctgttg ctcagtacca gttcgacttc ggtctgcgtc cgtctgtagc
     8461 atacctgcag tctaaaggta aaaacctggg tgtcatcaat agtcgtaact acgacgacga
     8521 agatatcctg aaatatgttg atgttggcgc gacctactac ttcaacaaaa acatgtccac
     8581 ctatgttgac tacaaaatca acctgctgga cgacaaccag ttcactcgtg acgctggcat
     8641 caacactgat aacatcgtag ctctgggtct ggtttaccag ttctaatctc gattgatatc
     8701 gaacaaaggg cctgcgggcc ctttgttcat tgttttcagc gtacaaactc agttttttgg
     8761 tgtactcttg cgaccgttcg catgaggata atcacgtatg gaaataagct ttacccgcgt
     8821 ggcactgctg gctgccgcgc tcttctttgt tggttgcgat caaaaaccac aacccgccaa
     8881 aacccacgct actgaagtta ccgttcttga aggcaaaacc atgggtacct tctggcgtgc
     8941 cagcatcccg ggcattgatg ccaaacgcag tgccgaactt aaagaaaaga ttcagaccca
     9001 gctggacgcc gacgatcagc tgctttcgac ctataaaaaa gattccgcgc tgatgcgctt
     9061 taacgactcg caaagtttgt cgccgtggcc agtaagtgaa gcgatggccg aaatcgtcac
     9121 tacctcgctg cgcattggcg cgaagaccga tggtgcgatg gatattaccg tcgggccgct
     9181 ggtaaatctg tggggctttg gcccggaaca acagccggtt caaattccga gccaggaaca
     9241 gatcgacgag atgaaagcca aaactggttt acagcacctt acggtcatta atcagtcgca
     9301 tcagcaatat ctgcaaaaag acctgccgga tttatatgtc gatctctcta ccgtcggcga
     9361 aggttatgcg gcggatcact tggcacgctt gatggagcag gaagggattt cccgctatct
     9421 ggtgtcggtg ggcggcgcgc tgaacagccg tggtatcaac ggtgaaggcc tgccgtggcg
     9481 ggtagcgatt caaaaaccaa ccgataaaga aaacgcagtt caggctgtgg tggatatcaa
     9541 cggtcatggg attagcacct ctggcagcta ccgtaactat tacgaactgg acggcaaacg
     9601 tctttcccat gttatcgatc cgcaaaccgg gcgtcccatc gaacacaatc tggtatccgt
     9661 gacggtgatt gctccgacgg cgctggaagc cgatgcctgg gatactggct tgatggtact
     9721 cgggccggag aaagccaaag aggttgttcg ccgggaaggg ctggcggttt atatgatcac
     9781 caaagaaggc gatagcttta aaacctggat gtcaccacag tttaaaagct tccttgtcag
     9841 cgaaaaaaat taaagcgcaa gattgttggt ttttgcgtga tggtgaccgg gcagactaaa
     9901 ggctatcctt aaccagggag ctgattatga aaaacgccac atgcttaact gacgatcaac
     9961 gctggcaatc tgtcttagcc cgcgacccga atgccgacgg cgaattcgtt ttcgccgtgc
    10021 gcaccacagg catcttttgc cgtccgtctt gccgcgccag acatgccttg cgggaaaatg
    10081 tctccttcta cgcaaatgcc agcgaggcac tcgccgccgg atttcgcccc tgcaaacgct
    10141 gccaacctga taaagccaat gcccagcaac atcggttgga taaaatcacc cacgcgtgtc
    10201 gactgctgga acaggaaacg cctgtaacgt tggaagcctt agccgaccag gtggcgatga
    10261 gtccatttca tctacatcgg ttgtttaaag cgactaccgg aatgacgcct aaagcctggc
    10321 aacaggcctg gcgcgctcgc cgtttgcgcg aatcgctggc gaaaggggag agcgtgacga
    10381 cgtctattct taacgccgga ttccccgaca gcagcagtta ctaccgcaaa gccgatgaaa
    10441 cgctgggcat gacggctaaa caattccgtc acggtggcga aaatctggcg gtgcgttacg
    10501 cgctggctga ttgtgcgctg ggtcgttgcc tggtggcaga aagcgagcgg gggatttgcg
    10561 cgatattgct gggcgatgat gacgcgacat taatcagcga gttgcagcag atgtttcccg
    10621 ctgccgacaa cgcgcctgcc gatctgacgt ttcagcaaca tgtgcgtgaa gtgatcgcca
    10681 gcctcaatca acgcgatacg ccgctgacgt taccgctgga tattcgcggc actgcttttc
    10741 agcaacaagt ctggcaggca ctgcgcacga taccttgcgg tgaaaccgta ctggctaacg
    10801 ccatcggcaa accgaaagcg gtacgggccg ttgccagcgc ctgtgccgcc aacaagctgg
    10861 ctatcgtaat accctgtcat cgagtggtcg gtggtgatgg cacactttcc ggttaccgct
    10921 ggggcgtgtc tcgtaaagcg caactgctgc gccgcgaagc tgaaaatgag gagaggtaat
    10981 gttggatctg tttgccgatg ctgaaccgtg gcaagagcca ctggcggctg gtgcggtaat
    11041 tttacggcgt tttgctttta acgctgcgga gcaactgatc cgcgatatta atgacgttgc
    11101 cagccagtcg ccgtttcgcc agatggtcac ccccggggga tataccatgt cggtggcgat
    11161 gaccaactgt gggcatctgg gctggacgat ccatcggcaa ggttatctct attcgcccat
    11221 tgatccgcaa acaaataaac cgtggcccgc catgccacaa agctttcatg atttatgtca
    11281 acgtgcggct acggcggcgg gctatccaga tttccagcca gatgcttgtc ttatcaaccg
    11341 ctacgctcct ggcgcgaaac tgtcgctgca tcaggataaa gacgaaccgg atctgcgcgc
    11401 gccaattgtt tctgtttctc tgggcttacc cgcgattttt caatttggtg gcctgaaacg
    11461 taatgatccg ctcaaacgtt tgttgttgga acatggcgat gtggtggtat ggggcggtga
    11521 atcgcggctg ttttatcacg gtattcaacc gttgaaagcg gggttttatc cactcaccac
    11581 cgactgccgc tacaacctga cattccgtca ggcaggtaaa aaagaataaa aataagaatt
    11641 attattgctg tgcgcgcgaa gatgtttaaa ctgcgggctg taattcattg tccgggtttt
    11701 ctgcatggaa cttcttgtac ttgtctggcg gcagtatcgc tggccattta tcagtgtgat
    11761 ggcgctaagc ctcgccagtg cggcattagg cattggctta attgctttta tcaatcagcg
    11821 ccttatcgaa atggcggata ccagtctgct ggtattgccg gagtttctgg gattattgct
    11881 gctgttgatg gcagtcactc tcggatcgca actggcgctc accactttgg ggcatcactt
    11941 cgtttaccga ctgcgtagtg aatttatcaa gcggattctg gatacccacg tcgagcgcat
    12001 tgaacaactc ggtagcgcct cgttgttggc gggattaacc agcgatgtgc gcaatatcac
    12061 cattgctttt gtgcgtcttc cggaactggt gcaggggatc attctcacta tcggttccgc
    12121 ggcgtatctg tggatgctgt cgggcaaaat gttgctggta acggctatct ggatggcgat
    12181 caccatctgg ggtggttttg tactggtggc gcgggtgtac aaacatatgg cgaccctacg
    12241 tgaaaccgaa gacaagctgt acacggattt tcaaactgta cttgaagggc gcaaagagct
    12301 gactctgaac cgggaacgcg ccgagtatgt gtttaacaac ctctacatcc ccgatgcgca
    12361 agagtatcgc catcatatta ttcgcgcaga caccttccat cttagtgccg tgaactggtc
    12421 aaacatcatg atgctgggcg ctatcggcct ggtgttctgg atggcgaaca gtctcggttg
    12481 ggctgatacc aacgttgctg cgacctattc gttgacgctt ttattcctgc gtacgccgct
    12541 gctttcggcg gttggcgcat tgccgacgct gctgatggcg caggtggcgt ttaacaagct
    12601 gaacaaattc gcgctcgcgc ctttcaaagc agagtttccg cgcccgcagg cgtttcccaa
    12661 ctggcaaacg ctggagctgc gtaatgtgac gtttagctat caggataacg cgttttccgt
    12721 tggtccgatt aatctcacca tcaaacgtgg cgagctactg tttctgattg gtggtaacgg
    12781 tagtggaaaa tcgacgctgg cgatgttgtt gacgggcttg tatcagccac aaagcggcga
    12841 aatcttgctg gatggcaaac ctgtcagcgg cgaacaaccg gaagattatc gcaaactgtt
    12901 ttcggcagtg tttaccgatg tctggctttt tgatcaactg ctggggccgg agggtaaacc
    12961 cgctaacccg caactggttg agaagtggct ggcgcagctg aaaatggctc ataagcttga
    13021 gttaagcaac gggcgtattg ttaacctgaa gttatcaaaa gggcagaaaa aacgcgtggc
    13081 gctgttgctg gcgctggcag aagaacgcga tattatcctg ctggatgaat gggcggcgga
    13141 tcaggatcca cacttccgtc gtgagtttta tcaggtgttg ctgccgctga tgcaggagat
    13201 gggtaaaact attttcgcta tcagtcatga tgatcattac tttatccacg ccgaccgcct
    13261 gctggaaatg cgcaatgggc aacttagcga gctgacgggc gaagagcgcg atgccgcttc
    13321 gcgtgatgcc gttgcccgga cggcataata ttacgacgct gacctggcgg actgctgccg
    13381 tcaggtcaat atgctaaaaa tcccttcatt tctaataacc ctataattaa tcaacgaaat
    13441 tataatgttt ctaaaattag aatataattt ataaacatta tttaaatgtt gttacttaag
    13501 tgttaccttt gatgccgcgc aaatctcacc tgcaataaag cgactaaaag taaggcatta
    13561 acaagatgaa aaaagtgact gccatgctct tctcgatggc cgtggggctt aatgccgttt
    13621 cgatggcggc aaaagcgaaa gcgtccgagg agcaggaaac tgatgtactg ttgattggcg
    13681 gcggcattat gagcgccacg ttggggacct atttacgcga gctggagcct gaatggtcga
    13741 tgaccatgct ggagcgcctg gagggtgtcg cgcaggagag ttcgaacggc tggaataacg
    13801 ccggaaccgg gcattctgca ctgatggaac tgaactacac cccgcaaaac gccgatggca
    13861 gtatcagtat tgaaaaagca gtcgccatta acgaagcatt tcagatttcc cgccagttct
    13921 gggcgcacca ggtcgagcgc ggcgtgctgc gtactccgcg ttcatttatc aataccgttc
    13981 cgcatatgag ctttgtctgg ggcgaggata acgttaattt cctgcgcgcc cgttacgccg
    14041 cgttgcaaca aagctcgctg tttcgcggta tgcgttactc tgaagatcac gcgcagatca
    14101 aagagtgggc accgttagtg atggaagggc gcgatccgca acagaaagtg gcagccacgc
    14161 gtacggaaat tggtaccgat gtgaactacg gcgagatcac ccgccagtta attgcttcct
    14221 tgcagaagaa atctaacttc tcgctgcaac tcagcagcga agtccgcgcc ctaaagcgta
    14281 atgacgataa cacctggacc gttaccgttg ccgatctgaa aaatggcact gcacagaaca
    14341 ttcgtgccaa atttgtcttt atcggcgcgg gcggtgcggc gctgaagctg ttacaggaat
    14401 cggggattcc ggaagcgaaa gactacgccg gtttcccggt gggcggacag ttccttgttt
    14461 cggaaaaccc ggacgtggtt aatcaccatc tggcgaaggt ttacggtaaa gcatccgttg
    14521 gcgcaccacc gatgtcggtt ccgcatatcg atacccgcgt tctggacggt aaacgcgtag
    14581 tgctgtttgg gccatttgcc accttctcaa ccaaattcct caaaaacggt tcattgtggg
    14641 atctgatgag ttccaccacc acctctaacg tgatgccgat gatgcacgtc gggctggata
    14701 atttcgatct ggtgaaatat ctggtgagtc aggtgatgtt gagtgaagag gatcgttttg
    14761 aagcgttgaa agagtactat ccgcaggcga aaaaagagga ctggcgtttg tggcaagcgg
    14821 ggcagcgtgt gcagattatc aagcgtgatg ccgataaagg tggtgtactg cgtctgggta
    14881 ctgaagtggt cagtgaccag caagggacca ttgccgcgct cctgggagca tcgccagggg
    14941 cgtcaaccgc cgcgccgatt atgttggatc tgctggaaaa agtatttggc gatcgcgttt
    15001 ccagcccgca atggcaggct acgttgaaag cgatcgttcc gtcttatgga cgcaagctga
    15061 acggtgatgt agcggcaaca gaacgcgagt tgcagtacac cagcgaagtg ctggggctga
    15121 aatacgacaa gccgcaggca gcagatagta cgccaaaacc gcagttgaaa ccgcaacccg
    15181 ttcaaaaaga agtggcggat attgcgttgt aatgatgtgc cacatccggc atggtatgcc
    15241 ggatgtggcg tatactgata agacgcgcca gcgtcgcatc aggcaaccgg ctcgggcgtt
    15301 agatgttgga tgcggcgtaa ccgccttatc caaccaacgg ggtgccgtac ttcacaacag
    15361 tttagcgaac ttctgcgttg tcaattttct cttccgcctt ccagacgcgg tatttcacat
    15421 ctacattgtc tggcgtatac accacgatcg gcagcttgct gttgtaacgc agcattccag
    15481 catcgcccag atacgcggtg acaaatttct tctctttctt gccatccggg caggccatca
    15541 tcgtggaaac cggcgagcta actttatcaa agacataata atcatagccc cagccttcca
    15601 gcgttttgct ttccagcttc ccgccgagac gatgcaaatt gcaatcgact tccagcgtct
    15661 gaccgattaa cagttctact ttcagggtag attcatcttc ttgcggggtt aactgaatca
    15721 cctgacgctt catccctttt tcagcttgtg gataaggcgc gattttttcc agtggctgga
    15781 cgctttctgc cgcccaggcg gaagtggtag cgaaagcggc aaacaatact gcaggtagaa
    15841 tggtcttcat ttttttgctt tccttcttca tttataggtt ttcaccgatg atgtcgctga
    15901 aggttaacat attcataaga tttattaatt tgctttatga ataacttaaa gaatattcag
    15961 acaattttac ctgctctttt agtgttaaat tctgatgaga gaacaaacca gcagaaatat
    16021 ctctggtgaa ttaatcgcta tataaatatg tttataacca tttgaaatgt gagcaaaagc
    16081 ccgtttttgc cacgcttccc gccactcttt tgatcctgct acaggtttta ccccgatcgg
    16141 ggtatgcatc tttgacacat cctttaatat cttagcggtt ataaaaatgg cttattaatt
    16201 atgcggttta tttggtcgct ctcaattttc agagcgcgtt aatgatggaa ggtcaatgtg
    16261 aagattgatg catcccgtcg gggcatactc actggtcgct ggcgcaaagc cagtaacggt
    16321 atccgtccgc cctggtccgg tgatgaatct cattttctga cccattgcac ccgttgcgac
    16381 gcctgtatta atgcttgtga aaacaacatt ctgcaacgcg gcgcgggcgg ctatccgagc
    16441 gttaatttca aaaataacga gtgcagcttc tgttacgctt gcgcgcaggc ttgccccgaa
    16501 tcgctatttt ctccgcgcca caccagggcc tgggatttgc agttcaccat tggggacgcg
    16561 tgcctggcgt atcagtcagt tgaatgccgc cgctgtcagg atagctgtga gccaatggca
    16621 attatctttc gcccgacgct ctccgggatc taccagccgc aacttaatag ccaactttgc
    16681 aacggatgtg gagcatgtgc agccagctgt ccggtatcag ccataactgc ggagtatctc
    16741 catgcacact aactggcaag tttgcagcct ggtcgtgcag gccaaaagcg aacgaatttc
    16801 agacatcagc acccaactga acgcctttcc cggctgtgaa gttgctgtca gcgacgcgcc
    16861 gagcggtcag ttgattgtgg tggtggaagc agaagacagc gaaacgctga tccaaaccat
    16921 tgagtcagta cgcaacgtag agggcgtgct ggcggtgtcg ctggtttatc accagcagga
    16981 agagcaaggt gaggaaacac catgaaactc agtcgtcgta gctttatgaa agctaacgcc
    17041 gttgcggccg ctgcggcggc tgccggtctc agcgtgccgg gcgttgcccg cgccgttgtt
    17101 ggtcagcagg aagccatcaa atgggataaa gcgccgtgcc gtttctgcgg tactggttgc
    17161 ggcgttctgg tcggaacgca gcagggacgt gtggtggcct gtcagggcga cccagacgca
    17221 ccggttaacc gtggcctgaa ctgcattaag ggctatttcc tgcccaagat catgtacggt
    17281 aaagaccgtt tgacgcagcc gctgctgcgt atgaaaaacg gtaaatatga caaagaaggc
    17341 gaatttaccc taatcacctg ggatcaggcc ttcgatgtga tggaagagaa attcaaaacc
    17401 gccctgaaag aaaaagggcc ggaatcgatc ggtatgttcg gttctggtca gtggactatc
    17461 tgggaaggtt atgccgcgtc caagctgttt aaagcgggct tccgttcgaa caacatcgac
    17521 ccgaacgcgc gtcactgtat ggcgtcggca gtagttggct ttatgcgtac ctttggtatg
    17581 gatgagccga tgggctgcta tgacgacatc gagcaggctg acgcgtttgt gctgtggggc
    17641 gcaaacatgg cggagatgca cccgatcctc tggtcgcgca tcactaaccg tcgtctctct
    17701 aatcagaacg tcaccgtggc ggtgctttct acctaccagc atcgtagctt cgagctggcg
    17761 gataacggca tcatctttac gccacagtct gacctggtga tcctgaacta catcgccaac
    17821 tatatcattc aaaacaatgc gataaatcag gacttcttca gcaaacacgt taacctgcgc
    17881 aaaggggcga cggacattgg ctacggttta cgtccgaccc atccgctgga aaaagcagcg
    17941 aagaatccag gttctgacgc ctccgaaccg atgagctttg aagattacaa agccttcgtt
    18001 gccgagtata cgctggaaaa aactgccgaa atgaccggcg tgccgaaaga ccagttagaa
    18061 caactggcgc agctgtatgc cgatccgaac aagaaagtca tctcctactg gacgatgggc
    18121 ttcaaccagc atactcgtgg cgtgtgggct aacaacctgg tctacaacct gcacctgctg
    18181 accggcaaaa tttcccagcc gggttgcggt ccgttctccc tgaccgggca accttctgcg
    18241 tgtggtactg cgcgtgaagt gggcaccttt gctcaccgtc tgcctgcgga catggtggtg
    18301 accaacgaga aacaccgtga tatctgcgag aagaagtgga atatcccgag cggcaccatt
    18361 ccggcgaaaa tcggtctgca cgcggtggca caagaccgtg cgctgaaaga cggcaaactg
    18421 aatgtttact ggaccatgtg taccaacaac atgcaggccg ggccgaacat caatgaagag
    18481 cgtatgccgg gctggcgcga tccgcgcaac ttcatcatcg tctccgatcc gtatccgaca
    18541 gtcagtgcgc tggccgccga cttgatcctg ccgaccgcaa tgtgggtaga gaaagagggc
    18601 gcttacggta acgccgaacg ccgtactcag ttctggcgtc aacaggtaca ggcaccgggc
    18661 gaagcgaaat cggatctctg gcagttagtc cagttctccc gccgcttcaa aactgaagaa
    18721 gtatggccgg aagatctgct ggcgaagaaa ccggaactgc gtggcaaaac gctgtacgaa
    18781 gtgctgtatg ccacaccgga agtgagcaaa ttcccggtat ccgaactggc ggaagatcag
    18841 ctgaacgatg aatcccgcga gctgggcttc tatctgcaaa aagggctgtt cgaagagtac
    18901 gcatggtttg gtcgcggtca cggtcacgat ctggcaccgt tcgatgacta ccacaaagcg
    18961 cgcggtctgc gctggccggt ggtgaacggt aaagaaacgc agtggcgtta cagcgaaggt
    19021 aacgacccgt acgtgaaagc gggcgaaggc tataagttct acggcaaacc ggatggcaaa
    19081 gcggtgatct tcgcactgcc attcgaaccg gcggcggaag caccggatga agagtacgac
    19141 ctgtggctct ctaccggacg cgttctggag cactggcaca ccggcagtat gactcgccgt
    19201 gtaccagaac tgcaccgcgc cttcccggaa gcggtcctgt ttattcaccc gctggatgcg
    19261 aaagcgcgcg atctgcgtcg tggcgacaaa gtgaaagtgg tttctcgccg tggcgaagtg
    19321 atctcgattg tcgaaacgcg cggtcgtaac cgtccgccgc agggcctggt gtacatgccg
    19381 ttcttcgacg ccgcacagct ggttaacaaa ctaacgcagg acgcgaccga tccgctctcg
    19441 aaagagacgg acttcaagaa gtgcgcagtc aaactggaga aggtgtaagc cattatgtcc
    19501 cggtcagcga aacctcaaaa tggtcgccgc cgctttctgc gcgatgttgt tcgcacagca
    19561 ggcgggctgg ctgccgtggg tgtggcgctg gggttacaac agcaaaccgc acgcgcatct
    19621 ggcgtgcggt tgcgcccgcc cggagccata aacgagaacg cctttgccag tgcctgtgtg
    19681 cgttgcggtc agtgtgttca ggcttgccct tacgacacct taaaactggc gacgctggcc
    19741 tctggtctgt cggcgggcac gccatatttt gtcgcacggg atattccttg cgaaatgtgt
    19801 gaggacattc cgtgcgccaa agtgtgcccg agcggtgcgc tggatcgtga gatcgaatcg
    19861 atcgacgacg cgcggatggg gctggcggta ctggtggacc aggaaaactg tctcaacttt
    19921 caggggctgc gctgcgatgt ttgttatcgc gaatgcccga aaattgatga ggccatcacc
    19981 ctggagctgg agcgcaacac gcgtaccggt aagcacgccc gctttctgcc gacggttcac
    20041 agagacgcct gtaccggttg cggtaagtgc gaaaaagtgt gcgtgctgga acaaccggca
    20101 atcaaggtgt taccgctgtc actggctaaa ggggagttag gtcaccatta ccgcttcggc
    20161 tggctggagg ggaacaatgg caaatcgtaa acgtgacgcc gggcgcgagg cgctggagaa
    20221 aaaaggctgg tggcgcagtc accgttggct ggtgttacgt cgcctttgtc agttcttcgt
    20281 gctggggatg tttttgagcg gtccgtggtt tggtgtgtgg atcttacacg gtaactacag
    20341 cagtagcctg ttattcgaca ccgttccgct gaccgatccg ctgatgacgc tgcaaagtct
    20401 tgccagcggt catctgcctg ccacggtggc gttgaccggt gcggtgatta tcaccgtgct
    20461 ctacgccctg gcaggaaagc gattattttg cagctgggtc tgcccgctga atccgattac
    20521 cgacttagcg aactggttac gcaggcgctt tgacctcaat cagtctgcga cgatccctcg
    20581 ccacattcgc tacgtgctgt tggtggtcat tctgctggga tcggccttaa ctggcacgct
    20641 catctgggaa tggatcaacc ccgtatctct gatggggcgc agcctggtaa tgggcttcgg
    20701 cagcggcgcg ctgcttattc tcgcgctgtt tttatttgat ctactggtcg ttgaacacgg
    20761 ctggtgcggg cacatttgtc cggttggcgc gctgtatggc gtgctgggta gcaaaggtgt
    20821 gattaccgtt gcggccaccg atcggcagaa atgtaaccgc tgtatggatt gttttcatgt
    20881 ttgcccggaa ccgcgtgtgc tacgtgcccc ggtgctggat gaacaaagcc cggtgcaggt
    20941 caccagccgc gattgcatga cgtgcggtcg ctgcgtggat gtctgttctg aggatgtatt
    21001 tacaataact acacgatgga gttcgggagc gaaatcatga aaagccatga cctgaagaaa
    21061 gcgctgtgtc aatggacggc gatgctggcc ctggtggtaa gcggcgcggt ttgggcggct
    21121 aatggcgtcg attttagcca gtcgccggaa gtatccggga cacaggaagg ggccattcgg
    21181 atgccaaaag agcaggaacg gatgccgctg aactatgtga atcagccgcc aatgatcccg
    21241 catagcgttg aaggttatca ggtaacgacc aataccaacc gctgcttgca gtgccacggt
    21301 gtcgaaagtt atcgcaccac tggcgcgccg cgcattagtc ctactcactt tatggacagc
    21361 gacggcaaag tgggcgcgga agtggctccg cgtcgttatt tctgtctgca atgtcacgta
    21421 ccgcaggccg ataccgcgcc aatcgtgggg aataccttta ccccatcaaa aggttacggg
    21481 aaataagagg ttattatggg aaattctgac cgtaagcctg gtctgattaa gcgcctgtgg
    21541 aaatggtggc gtacccccag ccgtctggcg ctggggacgc tgctgttgat cggttttgtt
    21601 ggcggcatcg tcttctgggg tggctttaac accgggatgg aaaaagccaa taccgaagag
    21661 ttctgcatta gctgccacga aatgcgcaac acggtatatc aggaatacat ggattccgtg
    21721 cactacaaca accgtagcgg cgtccgtgcg acctgtccgg attgtcacgt tccgcacgag
    21781 tttgtgccga agatgatacg caagctcaaa gcaagtaaag agctgtatgg taaaattttt
    21841 ggcgttattg acacgccgca gaaatttgaa gctcatcgtc tgacgatggc acagaatgag
    21901 tggcggcgca tgaaggacaa taactcgcag gagtgccgta actgtcacaa cttcgagtat
    21961 atggatacaa ccgcccagaa atcggttgcc gcgaagatgc atgaccaggc ggtgaaagat
    22021 gggcaaacct gtattgattg ccataaaggg atagcgcaca agctgcccga tatgcgtgaa
    22081 gtcgagccag gtttttaaca gggttattgc gtgggtatgc ttgaagccag agagttactt
    22141 tgtgagcggg atgaacgaac cttatttagt ggcttgtcat ttacgctgaa cgcaggagag
    22201 tgggtacaaa tcaccggtag caacggcgcg gggaagacaa cgcttctccg tttgctgacg
    22261 gggttgtctc gccctgacgc aggcgaggtt ctctggcaag ggcagccctt gcatcaggta
    22321 cgcgacagct accatcaaaa cctgttatgg ataggccatc agccggggat caaaacccgg
    22381 ctgacggcgt tagaaaatct gcacttttat catcgcgatg gcgataccgc acaatgtctg
    22441 gaagccctgg cgcaggccgg gcttgccgga ttcgaagata ttcctgtaaa tcagctctcg
    22501 gccgggcaac aacgccgcgt cgctttagcg cgtctgtggc tgacccgtgc cacgttatgg
    22561 atcctcgacg agccttttac cgcgattgac gttaacggcg tcgatcgtct gacccagcgt
    22621 atggcgcagc atacggagca gggggggatt gtgattctga ctacccacca gccgctcaac
    22681 gttgctgaaa gtaaaattcg ccgcatttca ctgacgcaaa cgagggccgc atgatgttct
    22741 ggcgcatttt ccgtcttgag ctgcgtgtag cgtttcgcca tagcgccgaa atcgccaacc
    22801 cgctgtggtt cttcctgatt gtaattaccc tttttccgct cagtatcggt ccggagccgc
    22861 aactgctggc gcgtattgca ccgggcatta tctgggttgc tgcgctgctt tcatccttgc
    22921 tggcgctgga acgactgttc cgtgacgatt tgcaggacgg cagtcttgaa caattgatgt
    22981 tgttgccgtt acccttgccc gccgttgtgc tggcgaaggt gatggcgcac tggatggtaa
    23041 ccggtctgcc gttactcatc ctttcgccac tggtagcaat gctactggga atggatgttt
    23101 atggctggca agtgatggcg ctgacgctgc tgctgggaac gcctacgctt ggctttctcg
    23161 gtgcaccggg tgtggcgttg acagtgggac ttaagcgcgg tggtgtgctg ctcagcatac
    23221 tggtgttacc gctgactatc ccattactca tctttgccac cgccgcgatg gacgcggctt
    23281 ccatgcattt gcccgttgac gggtatctgg caattttagg cgcgttgctg gcaggcaccg
    23341 cgacattaag tccttttgcg acggcggcag cgttacgaat cagcattcaa taacgctgga
    23401 ttactgattt ttgttcgagt ctggtatcga aactatgtgg aaaacactgc atcaactggc
    23461 gatcccacca cggctgtatc aaatctgtgg ctggtttata ccgtggctgg caattgccag
    23521 tgtggtcgtg cttaccgtcg gctggatctg gggattcggc tttgctccgg ctgattatca
    23581 gcagggaaat agctaccgca ttatctacct gcatgtgcct gcggcgatct ggtcgatggg
    23641 tatttatgca tcaatggcgg tggcggcgtt tattggcctt gtctggcaga tgaaaatggc
    23701 caacctggcg gtggcggcga tggcccccat tggtgccgtg tttaccttta ttgccctggt
    23761 taccggctct gcatggggaa aaccgatgtg gggcacctgg tgggtatggg atgcacgtct
    23821 gacttctgaa ctggtgctgc tgtttttgta tgtgggtgtg attgccctgt ggcacgcctt
    23881 cgacgaccgc cgtctggcgg gccgtgcggc aggtatcctg gtgctgattg gcgtggtgaa
    23941 tctgccgatt attcattact ccgtggagtg gtggaacacc ctgcatcagg gatcaacgcg
    24001 gatgcagcaa agtatcgatc cggcgatgcg ttcgccgctg cgctggtcga tttttggctt
    24061 cctgctcctg tctgccacgc tgacgctgat gcggatgcgt aatttgattt tgctgatgga
    24121 aaaacgccgt ccgtgggtga gtgaactgat actgaaaaga ggccgtaaat gacccttgca
    24181 tttgcttcct ggaatgaatt tttcgcaatg ggcggttacg ccttttttgt ctggctggcg
    24241 gtggtgatga ccgttattcc gctggtggtt ttggtcgtgc actcggtgat gcagcatcgc
    24301 gcaattctgt gtggtgtgga gcaacagcgg gcgcgtgagg cgcgtttacg tgctgcgcaa
    24361 cagcaggagg ctgcatgaat attcgccgta aaaaccgctt gtggattgcc tgtgctgtgt
    24421 tggcaggttt ggcgctgacc atcggtctgg tgctgtatgc gctgcgctcg aatatcgatc
    24481 tcttttatac gccgggggaa attctctacg gcaagcgtga aactcagcaa atgccggaag
    24541 tcggtcagcg tctgcgcgtt ggcgggatgg tgatgccggg tagtgtgcag cgcgatccca
    24601 attcgctgaa agtgaccttc accatttacg acgctgaagg ctcagtggat gtctcttacg
    24661 aaggcatttt gccggatctg ttccgtgaag ggcagggcgt tgtggtgcag ggcgagctgg
    24721 aaaaaggcaa tcatatcctc gcgaaagaag tgctggcgaa acacgacgaa aactacacgc
    24781 cgccagaagt tgagaaagcg atggaagcta accaccgtcg cccggcgagt gtttataagg
    24841 acccagcatc atgatgccgg aaattggaaa cgggctgctg tgcctggcgc tgggaattgc
    24901 gctgctgctg tccgtgtatc cgctatgggg cgtggcgcgc ggagatgcgc gcatgatggc
    24961 gtcttcccgc ttgtttgcct ggctgctgtt tatgtctgtg gctggcgcat ttctggtgct
    25021 ggtcaatgct ttcgtggtca acgactttac cgtcacctat gttgccagca actccaatac
    25081 ccagcttccg gtgtggtatc gcgtggcggc tacctggggc gcgcatgaag gttcgcttct
    25141 gctgtgggtg ctgctgatga gcggctggac ctttgcggtg gcgattttta gtcagcgtat
    25201 tccgctggat attgtggccc gtgtactggc gataatgggg atggtcagcg tcggcttttt
    25261 gctgttcatt ctctttacct ctaacccgtt ctcacgcacg ctgccgaact tcccaattga
    25321 agggcgcgat cttaacccgc tgttacagga tccggggctg atcttccatc cgcctctgct
    25381 ttatatgggg tacgtgggtt tctcggtggc gtttgctttt gccattgctt ctttgctgag
    25441 cgggcgtctg gacagcactt atgcgcgttt tactcgcccg tggacgctgg cggcgtggat
    25501 tttcctgacg ctcggcattg tgctcggttc cgcatgggcc tattacgaac tcggctgggg
    25561 gggctggtgg ttctgggatc cggtagaaaa cgcctcgttt atgccgtggc tggtggggac
    25621 tgcgctgatg cactcactgg cggtcactga acaacgcgcc agcttcaaag cgtggacatt
    25681 actgctggca atcagtgcct tctcgttgtg tctgctgggg actttcctgg tgcgttccgg
    25741 cgtgctggta tcggtacacg cgtttgcctc tgatccggca cgcggtatgt ttatcctcgc
    25801 ctttatggta ctggtgattg gtggttcgct gctgctgttt gccgcgcgtg gacacaaagt
    25861 tcgctcacgc gtaaacaatg cgctgtggtc gcgggaatct ctgctgttag cgaacaacgt
    25921 tttgttggtc gccgcgatgc tggtggtatt actggggacg ctgctgccgc tggtgcacaa
    25981 gcaactggga ctgggcagta tttcgattgg cgaaccgttc ttcaacacca tgtttacctg
    26041 gctgatggtg ccgtttgcgc tgctgcttgg tgtcggtcct ctggtgcgct gggggcgcga
    26101 tcgcccacgt aaaatccgca atttattgat tatcgccttc atctcaacgc tggtgctgtc
    26161 gctgctgctg ccgtggctgt tcgaaagcaa agttgtggcg atgacggtgc tcggcctggc
    26221 aatggcctgc tggattgctg tgctggcaat tgcggaagct gcgctgcgta tttcacgtgg
    26281 cacgaaaacc accttcagtt attggggaat ggtggcggct cacctggggc tggcagtgac
    26341 aattgttggt attgccttta gccagaacta tagcgttgag cgtgatgtgc gcatgaagtc
    26401 cggcgatagc gtcgatattc atgaatatcg cttcaccttc cgtgatgtca aagaggtgac
    26461 tggcccgaac tggcgcggcg gtgtggcgac tattggcgta acgcgagagg gtaaaccgga
    26521 aacggtgctg tatgcggaaa aacgttatta caacactgcc gggtcgatga tgaccgaagc
    26581 ggcgattgac ggcggcatca cgcgtgacct gtacgccgcg ctcggtgaag agctggaaaa
    26641 cggcgcgtgg gccgtgcgtc tttactacaa accgtttgtt cgctggattt gggcgggcgg
    26701 gctgatgatg gcgttgggcg gactgctgtg tctgtttgat cctcgctatc gtaagcgcgt
    26761 gagtccgcaa aaaactgcgc cggaggctgt atgaagcgca aagtattgtt aattccgttg
    26821 attatcttcc tggcgattgc cgcggcgctg ctgtggcagc tggcgcgtaa tgccgaaggg
    26881 gatgatccga ccaatctgga atcggcgctc attggcaagc cagtgccgaa gtttcgcctc
    26941 gaatcactgg acaatccggg gcagttttat caggcggatg tgctgactca gggcaaacct
    27001 gtgctgctta acgtttgggc tacctggtgt ccgacctgcc gtgcggaaca tcaatatctg
    27061 aatcagcttt ctgcgcaggg cattcgcgtg gtcggcatga actataaaga cgatcgccag
    27121 aaggcaataa gctggctgaa agagctgggc aatccttacg cgctaagcct gtttgatggc
    27181 gatggcatgt tagggctgga tctcggtgtc tatggcgcgc cagaaacgtt cctcatcgac
    27241 ggcaacggca tcattcgcta tcgccatgcg ggcgatctca atcctcgcgt ctgggaagaa
    27301 gagatcaagc cgctgtggga gaaatacagt aaggaggccg cacaatgagg tttttattgg
    27361 gcgtgctgat gctgatgatc tccggctcag cgctggcgac catcgacgtg ttgcagttta
    27421 aggatgaagc gcaggagcag cagttccgcc aactcactga agaactacgc tgcccgaaat
    27481 gccagaacaa cagcattgcc gattccaact cgatgattgc caccgacctg cgccagaaag
    27541 tgtatgaact gatgcaggaa ggtaaaagta aaaaagagat tgtcgattat atggtggcgc
    27601 gttacggcaa cttcgtcact tacgatccgc cgttaacgcc gctgaccgtg ctgctgtggg
    27661 tgcttccggt agtggctatt ggcattggcg gttgggtcat ttacgcccgt tcgcggcgtc
    27721 gggtacgcgt ggtgccggac gcgtttcctg aacaaagcgt gccggaaggt aagcgtgccg
    27781 gatatattgt ttatctgccg ggtattgtgg tggcgttaat tgtggctggc gtcagctact
    27841 accagactgg caattatcag caggtgaaaa tctggcagca ggccacggca caggctccgg
    27901 cgttgctgga cagggcgctg gatccgaaag ccgatccgct caacgaagaa gagatgtcgc
    27961 gtcttgcgct ggggatgcgt actcaactgc aaaaaaatcc gggagatata gaaggctgga
    28021 ttatgttggg ccgcgttggc atggcgctgg gtaacgccag tatcgccacc gatgcatacg
    28081 ctactgcgta tcgcctcgat ccgaaaaaca gtgatgccgc actgggttat gctgaagcgt
    28141 tgacacgttc atctgatccc aacgacaacc gcctcggtgg tgaactgctg cgccagttgg
    28201 tgagaacgga ccatagcaat atccgtgtgt taagcatgta tgcgtttaat gcctttgagc
    28261 agcagcgatt tggcgaagcc gttgccgcgt gggagatgat gttgaaactc ttatctgcca
    28321 acgatactcg ccgtgcggtg attgaacgta gtatcgcgca ggcgatgcaa catttgtcgc
    28381 cgcaggagag taaataaaaa gaggcccgat ggtgatgcca tcgggctatt tttattgtgc
    28441 cccgcgttgt tgcaggaaca gaatggtggc tgccacgcgt gagcggacat tgagtttgcg
    28501 cagcagattg cgaatatgta cttttactgt ctgctctgaa atattcaaca ccgaggcaat
    28561 ctgtttattt gacagcccct gtgccagctc gtgcagaaca tccagctcgc gctccgtcag
    28621 cacgctgaag ggatcttctt ccgcgccaaa catttcacgt tcacgtaagt actgattgac
    28681 gcgttcgcta aagactttgc tgcctttcgc tccagcacga attgcttcca gcaatacttc
    28741 cgggtcgctg tctttcaaca gataaccgtc tgcgcctgcg tctatcagcg caaagacatc
    28801 gctggaggca tctgatacgg tcaggataat aatttgcgcg gtaacgccat ccctgcgcaa
    28861 ggcattgagg gtatccaggc cactcatacc tttcatattg agatccagca agatcacgtc
    28921 gatatccagt ctatttgcca gatcgatcgc gctcgcgccg tcgcccgctt cggcgaccac
    28981 ttcaaagcta ggatcaagct ccagtaactg acgaacaccg cgtcgcataa gtggatgatc
    29041 atccacaatc atcacctgaa aaggcgttgc ttcaggcata gtagtctcct ggggttttat
    29101 tagaatcatt atgtttgagc gtagcgttgg taacgctacc aggcgcgtga atgttacccc
    29161 attttatgta tggacatgta gtgaaaacta caaccttgtc gttcgctttg gcatcatttt
    29221 cattataaag acggaatttt gcatcagctt ctc
//
LOCUS       DAJVSY010000033        29120 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.033, whole genome shotgun sequence.
ACCESSION   DAJVSY010000033 DAJVSY010000000
VERSION     DAJVSY010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29120)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29120)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29120
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.033"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            226..669
                     /locus_tag="OQQ19_001349"
     CDS             226..669
                     /locus_tag="OQQ19_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004997737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1803033.1"
                     /translation="MDLALVTGQREGDLAAMRWEDIRDGRLYVEQQKTGAKIRISLPT
                     TISRLNLTLTDVLDNLKKINGKNEKLLGGKTARTIAAQFRIARDTSGLKWEGDPPPFH
                     EIRSLSGRLHSAEKGSDFTQALLGHRSSSMTDKYRDGRGREWKDI"
     gene            905..1723
                     /gene="ybhA"
                     /locus_tag="OQQ19_001350"
     CDS             905..1723
                     /gene="ybhA"
                     /locus_tag="OQQ19_001350"
                     /EC_number="3.1.3.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyridoxal
                     phosphate/fructose-1,6-bisphosphate phosphatase"
                     /protein_id="HCS1803034.1"
                     /translation="MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTG
                     RHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVNKALQLIEMLNEHHI
                     HGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFAL
                     THDDMPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENV
                     VAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI"
     gene            complement(1724..2782)
                     /gene="modC"
                     /locus_tag="OQQ19_001351"
     CDS             complement(1724..2782)
                     /gene="modC"
                     /locus_tag="OQQ19_001351"
                     /EC_number="7.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter ATP-binding protein
                     ModC"
                     /protein_id="HCS1803035.1"
                     /translation="MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAI
                     SGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMA
                     KSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLD
                     IPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWG
                     SSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQ
                     ASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELA
                     IKPGLWLYAQIKSVSITA"
     gene            complement(2785..3474)
                     /gene="modB"
                     /locus_tag="OQQ19_001352"
     CDS             complement(2785..3474)
                     /gene="modB"
                     /locus_tag="OQQ19_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HCS1803036.1"
                     /translation="MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGK
                     ALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVM
                     SFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARS
                     LGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEW
                     LARISRERAGR"
     gene            complement(3474..4247)
                     /gene="modA"
                     /locus_tag="OQQ19_001353"
     CDS             complement(3474..4247)
                     /gene="modA"
                     /locus_tag="OQQ19_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1803037.1"
                     /translation="MARKWLNLFAGAALSFAVAGNTLADEGKITVFAAASLTNAMQDI
                     ATQYKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTASRQ
                     TLLGNSLVVVAPKASEQKDFIIDSTTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKL
                     GAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVVSKGVKVVATFPEDSHKKV
                     EYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTTK"
     gene            complement(4413..4562)
                     /gene="acrZ"
                     /locus_tag="OQQ19_001354"
     CDS             complement(4413..4562)
                     /gene="acrZ"
                     /locus_tag="OQQ19_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux pump accessory protein AcrZ"
                     /protein_id="HCS1803038.1"
                     /translation="MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQ
                     PGQNH"
     gene            4691..5479
                     /gene="modE"
                     /locus_tag="OQQ19_001355"
     CDS             4691..5479
                     /gene="modE"
                     /locus_tag="OQQ19_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-dependent transcriptional regulator"
                     /protein_id="HCS1803039.1"
                     /translation="MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGIS
                     YKSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDV
                     LSDDDALPLNSLLAAISRFSLQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKV
                     AITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNANNQLPGIISHIERGAEQCE
                     VLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIATLC"
     gene            5547..7019
                     /gene="modF"
                     /locus_tag="OQQ19_001356"
     CDS             5547..7019
                     /gene="modF"
                     /locus_tag="OQQ19_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter ATP-binding protein
                     ModF"
                     /protein_id="HCS1803040.1"
                     /translation="MSSLQILQGTFRLSDTKTLQLPQLTLNAGDSWAFVGSNGSGKSA
                     LARALAGELPLLKGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLGPGEDDTGRTT
                     AEIIQDEVKDAPRCMQLAQQFGITALLDRRFKYLSTGETRKILLCQALMSEPDLLILD
                     EPFDGLDVASRQQLAERLASLHQSGITLVLVLNRFDEIPEFVQFAGVLADCTLAETGA
                     KEELLQQALVAQLAHSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPIL
                     NNLSWQVNPGEHWQIVGPNGAGKSTLLSLVTGDHPQGYSNDLTLFGRRRGSGETIWDI
                     KKHIGYVSSSLHLDYRVSTTVRNVILSGYFDSIGIYQAVSDRQQKLVQQWLDILGIDK
                     RTADAPFHSLSWGQQHLALIVRALVKHPTLLILDEPLQGLDPLNRQLIRRFVDVLISE
                     GETQLLFVSHHAEDAPACITHRLEFVPDGGLYRYVLTKIY"
     gene            7280..8296
                     /gene="galE"
                     /locus_tag="OQQ19_001357"
     CDS             7280..8296
                     /gene="galE"
                     /locus_tag="OQQ19_001357"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308814.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HCS1803041.1"
                     /translation="MRVLLTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVI
                     ERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVN
                     GTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL
                     TDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIF
                     GNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGIGSSVLDVVNAF
                     SKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ
                     GYPD"
     gene            8306..9352
                     /gene="galT"
                     /locus_tag="OQQ19_001358"
     CDS             8306..9352
                     /gene="galT"
                     /locus_tag="OQQ19_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HCS1803042.1"
                     /translation="MTQFNPVDHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQV
                     LPAHDPDCFLCAGNVRVTGDKNHDYTGTYVFTNDFAALMSDTPDAPESNDPLMRCQSA
                     RGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQVFENKGAAMGC
                     SNPHPHGQIWANSFLPNEAEREDRLQKEYFAEQKSPMLVDYVQRELADGSRTVVETEH
                     WLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPY
                     SMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAER
                     LRAVSDIHFRESGV"
     gene            9356..10504
                     /gene="galK"
                     /locus_tag="OQQ19_001359"
     CDS             9356..10504
                     /gene="galK"
                     /locus_tag="OQQ19_001359"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001713229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HCS1803043.1"
                     /translation="MSLKEKTQSLFANAFGYPATHTIQAPGRVNLIGEHTDYNDGFVL
                     PCAIDYQTVISCAPRDDRKVRVMAADYENQLDEFSLNAPIVAHENYQWANYVRGVVKH
                     LQLRNNSFGGVDMVISGNVPQGAGLSSSASLEVAVGTVLQQLYHLPLDGAQIALNGQE
                     AENQFVGCNCGIMDQLISALGKKDHALLIDCRSLGTKAVSMPKGVAVVIINSNFKRTL
                     VGSEYNTRREQCETGARFFQQPALRDVTIEEFNAVAHELDPIVAKRVRHILTENARTV
                     EAASALEQGDLKRMGELMAESHASMRDDFEITVPQIDTLAEIVKAVIGDKGGVRMTGG
                     GFGGCIVALIPEELVPAVQQAVAEQYEAKTGIKETFYVCKPSQGAGQC"
     gene            10498..11538
                     /gene="galM"
                     /locus_tag="OQQ19_001360"
     CDS             10498..11538
                     /gene="galM"
                     /locus_tag="OQQ19_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HCS1803044.1"
                     /translation="MLNETPALAPDGQPYRLLTLRNNAGMVVTLMDWGATLLSARIPL
                     SDGSVREALLGCASPECYQDQAAFLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQ
                     LHGGPEGFDKRRWQIVNQNDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITY
                     RATVDKPCPVNMTNHVYFNLDGEQSDVRNHKLQILADEYLPVDEGGIPHDGLKSVAGT
                     SFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQAKGDGKKVAAHVWSADEKLQLKVYT
                     TAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHPEWPQPDCFLRPGEE
                     YSSLTEYQFIAE"
     gene            11740..12492
                     /gene="gpmA"
                     /locus_tag="OQQ19_001361"
     CDS             11740..12492
                     /gene="gpmA"
                     /locus_tag="OQQ19_001361"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000301556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HCS1803045.1"
                     /translation="MAVTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKL
                     LKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAE
                     TAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDR
                     VIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEF
                     DENFKPLKRYYLGNADEIAAKAAAVANQGKAK"
     gene            complement(12650..13702)
                     /gene="aroG"
                     /locus_tag="OQQ19_001362"
     CDS             complement(12650..13702)
                     /gene="aroG"
                     /locus_tag="OQQ19_001362"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001109196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HCS1803046.1"
                     /translation="MNYQNDDLRIKEIKELLPPVALLEKFPATENAANTVAHARKAIH
                     KILKGNDDRLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTTV
                     GWKGLINDPHMDNSFQINDGLRIARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWG
                     AIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHS
                     AIVNTSGNGDCHIILRGGKEPNYSAKHVAEVKEGLNKAGLPAQVMIDFSHANSSKQFK
                     KQMDVCADVCQQIAGGEKAIIGVMVESHLVEGNQSLESGEPLAYGKSITDACIGWEDT
                     DALLRQLANAVKARRG"
     gene            14018..14398
                     /locus_tag="OQQ19_001363"
     CDS             14018..14398
                     /locus_tag="OQQ19_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbgS-like family protein"
                     /protein_id="HCS1803047.1"
                     /translation="MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAATDAGQ
                     VAPDARENVAPNNVDNNGVNTGSGGTMLHSDGSSMNNDGMTKDEEHKNTMCKDGRCPD
                     INKKVQTGDGINNDVDTKTDGTTQ"
     gene            14512..15453
                     /gene="zitB"
                     /locus_tag="OQQ19_001364"
     CDS             14512..15453
                     /gene="zitB"
                     /locus_tag="OQQ19_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family zinc transporter ZitB"
                     /protein_id="HCS1803048.1"
                     /translation="MAHSHSHTSSHLPEDNNARRLLYAFGVTAGFMLVEVVGGFLSGS
                     LALLADAGHMLTDTAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVIT
                     ILIVWEAIERFRTPRPVEGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHV
                     LGDLLGSVGAIIAALIIIWTGWTPADPILSIVVSLLVLRSAWRLLKDSVNELLEGAPV
                     SLDIAELKRRMCREIPEVRNVHHVHVWMVGEKPVMTLHVQVIPPHAHDALLDQIQHYL
                     MDHYQIEHATIQMEYQPCHGPDCHLNEGVSGHSHHHH"
     gene            complement(15450..16169)
                     /gene="pnuC"
                     /locus_tag="OQQ19_001365"
     CDS             complement(15450..16169)
                     /gene="pnuC"
                     /locus_tag="OQQ19_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HCS1803049.1"
                     /translation="MDFFSVQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIGLASLEK
                     ISNYFFGLINVTLFGIIFFQIQLYASLLLQVFFFAANIYGWYAWSRQTSQNEAELKIR
                     WLPLPKALSWLAVCVVSIGLMTVFINPVFAFLTRVAVMIMQALGLQVVMPELQPDAFP
                     FWDSCMMVLSIVAMLLMTRKYVENWLLWVIINVISVVIFALQGVYAMSLEYIILTFIA
                     LNGSRMWINSARERGSCALSH"
     gene            complement(16207..17250)
                     /gene="nadA"
                     /locus_tag="OQQ19_001366"
     CDS             complement(16207..17250)
                     /gene="nadA"
                     /locus_tag="OQQ19_001366"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HCS1803050.1"
                     /translation="MSVMFDPDTAIYPFPPKPTPLSIDEKAYYREKIKRLLKERNAVM
                     VAHYYTDPEIQQLAEETGGCISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEK
                     TILMPTLQAECSLDLGCPVEEFNAFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAV
                     ELIDHLDSLGEKIIWAPDKHLGRYVQKQTGGDILCWQGACIVHDEFKTQALTRLQEEY
                     PDAAILVHPESPQAIVDMADAVGSTSQLIAAAKTLPHQRLIVATDRGIFYKMQQAVPD
                     KELLEAPTAGEGATCRSCAHCPWMAMNGLQAIAEALEQEGSNHEVHVDERLRERALVP
                     LNRMLDFAATLRG"
     gene            complement(17499..17574)
                     /locus_tag="OQQ19_001367"
     tRNA            complement(17499..17574)
                     /locus_tag="OQQ19_001367"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17539..17541),aa:Lys,seq:ttt)
     gene            complement(17721..17796)
                     /locus_tag="OQQ19_001368"
     tRNA            complement(17721..17796)
                     /locus_tag="OQQ19_001368"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17761..17763),aa:Lys,seq:ttt)
     gene            complement(17800..17875)
                     /locus_tag="OQQ19_001369"
     tRNA            complement(17800..17875)
                     /locus_tag="OQQ19_001369"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17840..17842),aa:Val,seq:tac)
     gene            complement(17927..18002)
                     /locus_tag="OQQ19_001370"
     tRNA            complement(17927..18002)
                     /locus_tag="OQQ19_001370"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17967..17969),aa:Lys,seq:ttt)
     gene            complement(18005..18080)
                     /locus_tag="OQQ19_001371"
     tRNA            complement(18005..18080)
                     /locus_tag="OQQ19_001371"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18045..18047),aa:Val,seq:tac)
     gene            complement(18116..18191)
                     /locus_tag="OQQ19_001372"
     tRNA            complement(18116..18191)
                     /locus_tag="OQQ19_001372"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18156..18158),aa:Lys,seq:ttt)
     gene            complement(18356..19147)
                     /gene="cpoB"
                     /locus_tag="OQQ19_001373"
     CDS             complement(18356..19147)
                     /gene="cpoB"
                     /locus_tag="OQQ19_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein CpoB"
                     /protein_id="HCS1803051.1"
                     /translation="MSSNFRHQLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQ
                     LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLS
                     SGGAAAQSTSSDQSGAAASTTPTADAGTANAGAPVKSGDANTDYNAAIALVQDKSRQD
                     DAMVAFQNFIKNYPDSTYLPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD
                     AMFKVGVIMQDKGDTAKAKAVYQQVISKYPGTDGAKQAQKRLNAM"
     gene            complement(19157..19678)
                     /gene="pal"
                     /locus_tag="OQQ19_001374"
     CDS             complement(19157..19678)
                     /gene="pal"
                     /locus_tag="OQQ19_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HCS1803052.1"
                     /translation="MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMD
                     ANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYK
                     VTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE
                     AAYSKNRRAVLVY"
     gene            complement(19713..21005)
                     /gene="tolB"
                     /locus_tag="OQQ19_001375"
     CDS             complement(19713..21005)
                     /gene="tolB"
                     /locus_tag="OQQ19_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001646851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HCS1803053.1"
                     /translation="MKQALRVAFGFLILWASVLHAEVRIVIDSGVDSGRPIGVVPFQW
                     AGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPSAWSALGIDAVVVG
                     QVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK
                     GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT
                     FESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA
                     SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQN
                     QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYS
                     SSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL"
     gene            complement(21138..22319)
                     /gene="tolA"
                     /locus_tag="OQQ19_001376"
     CDS             complement(21138..22319)
                     /gene="tolA"
                     /locus_tag="OQQ19_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HCS1803054.1"
                     /translation="MSKATEQNDKLKRAIIISAVLHVILFAALIWSSFDENIEASAGG
                     GGGSSIDAVMVDSGAVVEQYKRMQSQESSAKRSDEQRKMKEQQAAEELREKQAAEQER
                     LKQLEKERLAAQEQKKQAEEAAKQAELKQKQAEEAAAKAAADAKAKAEADAKAAEEAA
                     KKAAADAKKKAEAEAAKAAAQKKAEAAAAALKKKAEAAEAAAAEARKKAATEAAEKAK
                     AEAEKKAAAEKAAADKKAAADKKAAEKAAAEKAAADKKAAAEKAAAEADDIFGELSSG
                     KNAPKTGGGAKGNNASPAGSGNSKNNGASGADINNYAGQIKSAIESKFYDASSYAGKT
                     CTLRIKLAPDGMLLDIKPEGGDPALCQAALAAAKLAKIPKPPSQAVYEVFKNAPLDFK
                     P"
     gene            complement(22384..22812)
                     /gene="tolR"
                     /locus_tag="OQQ19_001377"
     CDS             complement(22384..22812)
                     /gene="tolR"
                     /locus_tag="OQQ19_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin uptake protein TolR"
                     /protein_id="HCS1803055.1"
                     /translation="MARARGRGRRELKSEINIVPLLDVLLVLLLIFMATAPIITQSVE
                     VDLPDATESQAVSSNDNPPVIVEVSGIGQYTVVVEKDRLERLPPEQVVAEVSSRFKAN
                     PKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMTQPI"
     gene            complement(22816..23508)
                     /gene="tolQ"
                     /locus_tag="OQQ19_001378"
     CDS             complement(22816..23508)
                     /gene="tolQ"
                     /locus_tag="OQQ19_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolQ"
                     /protein_id="HCS1803056.1"
                     /translation="MTDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNA
                     AAREAEAFEDKFWSGIELSRLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPE
                     AVVEGASRAMRISMNRELENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVK
                     QATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILH
                     RQAFTVSESNKG"
     gene            complement(23505..23909)
                     /gene="ybgC"
                     /locus_tag="OQQ19_001379"
     CDS             complement(23505..23909)
                     /gene="ybgC"
                     /locus_tag="OQQ19_001379"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HCS1803057.1"
                     /translation="MNTTLFRWPARVYYEDTDAGGVVYHASYVAFYERARTEMLRHHH
                     FSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENT
                     LLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ"
     gene            complement(24059..24352)
                     /gene="ybgE"
                     /locus_tag="OQQ19_001380"
     CDS             complement(24059..24352)
                     /gene="ybgE"
                     /locus_tag="OQQ19_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyd operon protein YbgE"
                     /protein_id="HCS1803058.1"
                     /translation="MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTS
                     ELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIIGLIFFFF"
     gene            complement(24352..24465)
                     /gene="cydX"
                     /locus_tag="OQQ19_001381"
     CDS             complement(24352..24465)
                     /gene="cydX"
                     /locus_tag="OQQ19_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-I oxidase subunit CydX"
                     /protein_id="HCS1803059.1"
                     /translation="MWYFAWILGTLLACSFGVITALALEHVESGKAGQEDI"
     gene            complement(24480..25619)
                     /gene="cydB"
                     /locus_tag="OQQ19_001382"
     CDS             complement(24480..25619)
                     /gene="cydB"
                     /locus_tag="OQQ19_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HCS1803060.1"
                     /translation="MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDT
                     ERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPV
                     GFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGN
                     FFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALA
                     GVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLP
                     LLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQ
                     LTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY"
     gene            complement(25635..27203)
                     /gene="cydA"
                     /locus_tag="OQQ19_001383"
     CDS             complement(25635..27203)
                     /gene="cydA"
                     /locus_tag="OQQ19_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415261.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HCS1803061.1"
                     /translation="MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSG
                     KQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLM
                     AFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFN
                     FETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKR
                     SFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPD
                     QEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSG
                     STDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRI
                     MVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQP
                     WAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGR
                     YHFEQSSTTTQPAR"
     gene            complement(28051..>29120)
                     /locus_tag="OQQ19_001384"
     CDS             complement(28051..>29120)
                     /locus_tag="OQQ19_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HCS1803062.1"
                     /translation="EESSDDGDEYDYSPAKEEWVITAANAKPQCDIIHEAWQSRAVIR
                     YDMAVPLNLSERSARQSTGRVGVVLVVTLSHNSRRIDVDINLDNQADDHRLRVLVPTP
                     FNTDSVLADTQFGSLTRPVNDSAMNNWQQEGWKEAPVPVWNMLNYVALQEGRNGMAVF
                     SEGLREFEVIGEEKKTFAITLLRGVGLLGKEDLLLRPGRPSGIKMPVPDSQLRGLLSC
                     RLSLLSYTGTPTAAGVAQQARAWLTPVQCYNKIPWDAMKLNKAGFNVPESYSLLKMPP
                     VGCLISALKKAEDRQEVILRLFNPAESATCDATVAFSREVISCSETMMDEHITTEENQ
                     GSNLSGPFLPGQSRTFSYRLA"
BASE COUNT         7361 a         7651 c         7100 g         7008 t
ORIGIN      
        1 aatcggaaaa tcgatactgg aaaaactcta actcggtggc cagtttttgt tgaccacttc
       61 acagacattt ttaaaacagc tatagcttct ggtcttgccg aagaagatcc agcttctgca
      121 accaggccat tcagaactga agtgaagcgc agtcgactgt taattgacga gtatctgtta
      181 atcaggaaaa tagcagacgt ccagaacgaa tggttcggcc tttgcatgga tcttgcactg
      241 gtaacaggac agcgcgaagg agatctggcg gctatgagat gggaggatat aagagatggc
      301 agactatacg tggaacaaca aaaaacaggg gcaaaaattc gcatttctct ccccaccacg
      361 atttccagat tgaatttaac acttaccgat gtactggata acttgaaaaa aataaacggt
      421 aaaaacgaaa agttactcgg agggaagaca gccaggacaa tcgcagcaca gttcaggatt
      481 gcccgagaca catccggatt gaaatgggaa ggtgacccac cgccatttca tgaaatccga
      541 agtttatccg gtcgcctgca ctcagcagaa aaaggcagtg atttcactca ggcgctcctt
      601 ggacatcgtt catccagcat gacggataaa taccgtgacg gacgagggag ggaatggaaa
      661 gacatttaga attaatttcg aatgatttcg aaacaccact tgtaattaat tgattataaa
      721 ggattaattc ctaagaggca tttgcttcat gaatgctcct ttgcatttag caactgactg
      781 taacagctaa aattagtcgc ttttggcggt gaatgctgaa ttaaaacgca gaattttgtc
      841 cgatagtggt atcggtgtac cattcgcgca gacgaaaatt cttaacctta atctggaata
      901 cgccatgacc acacgcgtga ttgctctcga cttagacggc accttattga ccccgaaaaa
      961 gaccctgctt ccttcatcga tagaagccct ggcccgcgct cgcgaagcag gctatcaatt
     1021 aatcatcgtc acaggtcgcc atcacgtcgc tattcatcct ttttatcagg cgctggcgct
     1081 ggatacacct gctatttgct gtaatggcac ctatttgtat gattatcatg caaaaaccgt
     1141 gctggaagcg gacccaatgc ccgttaataa agccctgcaa ctcattgaga tgctgaatga
     1201 acaccacatt cacggtctga tgtatgtgga tgatgcaatg gtctatgagc acccgaccgg
     1261 gcatgtcatt cgcacgtcta actgggcgca aaccctgccg ccggaacagc gtccgacttt
     1321 cacacaagtc gcttctctgg ctgaaacggc gcaacaagtt aacgccgtat ggaagttcgc
     1381 cctgacgcac gatgacatgc cgcaattgca gcattttggt aagcatgtcg aacatgaact
     1441 gggactggag tgtgaatggt cctggcacga tcaggttgat attgcacgcg gcggcaacag
     1501 caaaggtaaa cgtttgacga aatgggttga ggcgcaaggc tggtcgatgg aaaacgtcgt
     1561 ggcgttcggc gataacttta atgatatcag tatgctggag gccgctggta caggcgtggc
     1621 gatgggcaac gccgatgacg cggtaaaagc gcgcgccaac attgtgattg gtgataacac
     1681 caccgacagc attgcccagt tcatttatag ccacctgatt taatcaggcg gttatcgaca
     1741 cacttttaat ttgcgcgtac agccacaggc ctggtttgat cgccagttca tccctggccc
     1801 acgggctgat acgcgcccac agcgttttac cgccgacttc cagctccact tccacctgac
     1861 cgttgtcgtc ataactatta acaacttttg cccgcaatac gttacgaatg ctggtttgct
     1921 gcggcggttg taaaaccaga gaaacatcgg aagcctgaat gcggatacgt agcgcagctt
     1981 gcagcggttc gtccagctta ttgacccaca aatgctgatc gcccagcgcc agcgcggtca
     2041 tcgcgtaatg cggatgatgc tcaagcaccg tcactttcag aatgctactt tgttgctctt
     2101 tcggcagcca cggattcatc acgctactac cccagacttc ttccagtgcg ccaaaggctt
     2161 tcacctgacc gttttccagt accatcactc tgtctgccag atggaggatc tcatccagcg
     2221 aatggctgac atacaacatc gggatgttga tttcccgcgt cagacgttgc agataaggca
     2281 acagttcgcg tttacgcgga atatccagtg acgccagcgg ttcatccagc aacagcaatt
     2341 ctggtgccgt cagcaaagcc cgcccaatcg ctacgcgctg tttttcgcct ccggacaggc
     2401 tgcctggtaa acggtcaagc aacggttcaa tgcctaaaag cgccaccagc ttatcgaact
     2461 gatcgaccat gcttttcgcc atgccgtagc gcagattgcc acgcactttg taatgcggaa
     2521 acagccgcgc atcctgaaaa acatagccaa cgcgacgctt ttctggcgtc aggcagatac
     2581 ctttttcggc atcatttagt acccgaccat tgaggacaat cctccctttt tgcgggcgcg
     2641 tcagtccact gatggcgtta atcagcgaag tttttccggc accggagacg ccaaagatag
     2701 cagtgatgcc attggcgggc agcgtttcat taatagtcag gcaatggttg cccaacgtct
     2761 gggaaaaatt cagttccagc atgattagcg ccccgcccgt tcacggctga ttctggccag
     2821 ccattctgaa atcaacaggg agatcatcgc cagcgcaata gaaataatgc acagtctcgc
     2881 cgcgccactt tccccgccgg gggtctggat cagggtatac atggcagagg gaatggttcg
     2941 cgtttcgcca ggaatgttcg acacaaaggt gatggttgca ccaaactcac cgagagaacg
     3001 agcaaaagcc agtaccgtac caacaataat tcccggtaag gtcagcggta acgtgatagt
     3061 aaagaaaacg cgccagcgcc cggcacctag tgttcttgcg gcctgttcga gtttgacatc
     3121 aaccccttcc agcgccagac gaattgcccg caccatcagc ggaaacgaca tgacggcggc
     3181 agcgagaacc gcgccgcgcc agctaaaggc gaaggtaata ccaaaccagt catacagacg
     3241 ttcaccgata aatccgcgcc gtcccatcga aactaataat aagtaaccga cgaccacggg
     3301 cggtaacacc agcggtagat gcagtacgct gtcgagcaga gctttgcccg gaaacgtgca
     3361 acgcaccagt aaccaggcaa aaaagatccc aaacggcagg ctaaacagca cagccaggga
     3421 agaaactttc aggcttaata aaactgcctg ccattctgga tcggtcagta tcattacttg
     3481 gttgtaaatc cgtaacgttt aaagatttcc gctgcctgcg gtcccttcag ataatcataa
     3541 aatgctttca ctgtcgcatt gttatgccct tccacaacag caaccggata ttccactttt
     3601 ttatgtgaat cttccgggaa ggtggcaacc acttttaccc ctttgctgac aactgcgtca
     3661 gaaccgtaaa caatgcccaa cggcgcttca ttgcgttcga ccaacgccag cgcgccacga
     3721 acatcttccg ccggagccaa tttcggggag agcgtatccc atgcgcccag tttttgcagt
     3781 gcttcttttg cataaatgcc agcagggaca tgttccggat cgccaaccgc gaggcgaccg
     3841 ccattcagca gcgaagtcca gttagttgtg ctgtcgatga tgaaatcttt ctgctcgctg
     3901 gctttcggtg ctacaacgac caggctattg ccgagcagtg tctggcgcga agccgtatcg
     3961 atcgcttttt tatcaaccgc ataatccatc catttctgat cggcagagat aaacagatcc
     4021 gcaggcgctc ccgcttcaat ctgacgggcc agagtagatg acgaagcgaa agaagaaacc
     4081 acatccacgc ctttttcttt tttatactgc gtagcaatgt cctgcattgc gttagtcagt
     4141 gatgcggcgg cgaacaccgt gattttccct tcatctgcca gtgtattgcc agcaacagcg
     4201 aaagagagtg ccgccccggc aaacaagttc aaccatttac gagccattgg taacccctta
     4261 atgtaacgtt atataggtga caatataacg gctaactcag aattttccca gcagttattg
     4321 ctaacctttg tgaggtagat aagaaaaaat atcggctgga aaagcaggaa gttgagaaaa
     4381 agaaatgccc gactaagtgg gcattcaggg aatcaatgat tttgtccggg ctggtctttt
     4441 ttaccaacac cagaaaagat gttgaatact tcaccaagac cgtaaatcag acccaggatg
     4501 atggccatca cgacaggtac catgattacg gcgaatacca gactttttaa taactctaac
     4561 atggtcaact ccagatatag tcatgagact attctaaccg ctaagcacag aaaagcactc
     4621 cccttttgtg cggtcagctt tgcgtggcgt tcgttttccg tcacaataag acttttgcca
     4681 ggacattgtt atgcaggccg aaatccttct cacccttaag ctccaacaaa aattattcgc
     4741 cgacccgcgc cggatttcgc tactaaaaca cattgcgctt tccggttcca ttagccaggg
     4801 agcgaaagat gccggtatca gctataaaag cgcctgggat gccattaacg agatgaatca
     4861 gttaagcgag catattctgg ttgagcgcgc aacaggcggt aaaggtggcg gcggcgcagt
     4921 actgacccgc tatggtcagc gactgattca gctctatgac ttactggcgc aaatccagca
     4981 aaaagccttt gatgtgttaa gtgacgatga cgccctgccg ctgaacagcc tgctggccgc
     5041 gatctcacgt ttttcactgc aaaccagcgc ccgtaaccag tggttcggta ccatcaccgc
     5101 ccgcgatcat gatgacgttc aacagcatgt tgatgtctta ctggctgacg gaaaaacacg
     5161 cctgaaagtc gcaattaccg cacaaagcgg cgcacgtctg gggctggatg aaggcaaaga
     5221 agtgttgata ttgctaaaag cgccgtgggt aggcattact caggacgaag cggtcgcaca
     5281 aaacgccaac aaccaattac cgggtattat tagtcatatt gagcgcggcg cagagcagtg
     5341 cgaagtatta atggcgctac ccgacgggca aacactgtgc gccacagtgc cggtaaatga
     5401 agcgacttct cttcagcaag ggcagaatgt cacggcctac tttaatgccg acagcgtgat
     5461 tatcgccacg ctgtgctaag cgtgttgaca atttgttatg aaacacgtat ccctgtcagt
     5521 aatcgctgca caaaatggga tataaaatgt catcgttgca aattttgcaa ggcacgtttc
     5581 gtcttagcga cacaaaaacg ctgcaattgc ctcagctaac gttaaacgcg ggtgatagtt
     5641 gggcgtttgt cggttcgaat ggaagcggga aatcggccct ggcccgcgcg ctggcggggg
     5701 aacttccgct tttgaaaggt gaacggcaaa gccagttttc ccacatcact cgtctctcct
     5761 tcgagcaatt gcaaaaactc gtcagcgacg aatggcagcg gaataacacc gatatgctcg
     5821 gccctggcga agatgacacc ggacgcacta cggctgagat cattcaggat gaagtaaagg
     5881 atgcaccgcg ttgcatgcaa ctggcgcagc agttcggtat taccgccctc ctcgaccgac
     5941 gctttaaata cctttccact ggcgagacgc gaaaaatcct gctgtgtcag gcgctgatgt
     6001 cggagcctga cttgttgatt cttgatgagc cgttcgatgg cctggatgtt gcctcacgtc
     6061 agcagctggc tgagcgactc gcctcgttac atcagtccgg tattactctg gtactggtgc
     6121 tcaatcgctt cgatgagatc ccggagtttg tccagtttgc tggcgtgctg gcggattgca
     6181 cgttagcgga aactggcgct aaagaggaac tgctccaaca agcactcgtc gcgcaactgg
     6241 cacatagtga acagcttgaa ggtgtgcaac tgccggagcc ggatgaacct tcagcacgtc
     6301 acgccttacc cgccaacgaa ccgcgcattg tgctgaacaa tggcgtggtt tcttataacg
     6361 atcgccccat tcttaataac cttagctggc aggtgaatcc aggtgaacac tggcaaattg
     6421 tcgggccaaa tggtgcagga aaatcgacgt tattaagcct ggttactggc gatcatccgc
     6481 aaggttacag caacgatttg acgcttttcg gacgacgtcg cggcagcggc gaaaccatct
     6541 gggatatcaa aaagcatatc ggttacgtca gcagtagttt gcatctggat taccgggtca
     6601 gcactaccgt gcgtaatgtg attctttctg gctattttga ttcgattggc atttatcagg
     6661 ccgtttcgga tcgccagcaa aaactggtgc agcagtggct ggatattctc ggcattgata
     6721 aacgtacggc tgacgctccg ttccatagtc tttcctgggg acagcagcat ctggcgctga
     6781 tcgtccgcgc actggtgaaa catccgacgt tgcttattct cgatgaacca ctacaggggc
     6841 ttgatccgct caatcgccag cttatccgcc gttttgttga tgtgctgatt agcgaaggtg
     6901 aaacgcaatt gttgtttgtt tcgcaccacg ctgaagatgc gcctgcctgt attacccatc
     6961 gccttgagtt cgtgccggac ggtggactct atcgctatgt gctgacaaaa atatattgag
     7021 tcggtagtgc tgaccttgcc ggaggcggcc taagcgccct ctccggccaa cggttcgacg
     7081 catgcaggca tgaaaccgct tcttttttca gataaaaagc gcaatcattc ataaaccctc
     7141 tgttttataa tcacttaatc gcgcataaaa aacggctaaa ttcttgtgta aacgattcca
     7201 ctgatttatt ccatgtcaca cttttcgcat ctttgttatg ctatggttat ttcataccat
     7261 aagcctaatg gagcgaatta tgagagttct gcttaccggt ggtagcggtt acattggaag
     7321 tcatacctgc gtgcaattac tgcaaaacgg tcatgatgtc atcattcttg ataacctctg
     7381 taacagtaag cgcagcgtac tgcctgttat cgagcgttta ggcggcaaac atccaacgtt
     7441 tgttgaaggc gatattcgta acgaagcgtt gatgaccgag atcctgcacg atcacgctat
     7501 cgacaccgtg atccacttcg ccgggctgaa agccgttggc gaatcggtac aaaaaccgct
     7561 ggaatattac gacaacaatg tcaacggtac tctgcgcctg attagcgcca tgcgcgccgc
     7621 taacgtcaaa aactttattt ttagctcctc cgccaccgtt tatggcgatc agcccaaaat
     7681 tccatacgtt gaaagcttcc cgaccggcac accgcaaagc ccttacggca aaagcaagct
     7741 gatggtggaa cagatcctca ccgatctgca aaaagcccag ccggactgga gcattgccct
     7801 gctgcgctac ttcaacccgg ttggcgcgca tccgtcgggc gatatgggcg aagatccgca
     7861 aggcattccg aataacctga tgccatacat cgcccaggtt gctgtaggcc gtcgcgactc
     7921 gctggcgatt tttggtaacg attatccgac cgaagatggt actggcgtac gcgattacat
     7981 ccacgtaatg gatctggcgg acggtcacgt cgtggcgatg gaaaaactgg cgaacaagcc
     8041 aggcgtacac atctacaacc tcggcgctgg cataggcagc agcgtgctgg acgtggttaa
     8101 tgccttcagc aaagcctgcg gcaaaccggt taactatcat tttgcaccgc gtcgcgaggg
     8161 cgaccttccg gcctactggg cggacgccag caaagccgac cgtgaactga actggcgcgt
     8221 aacgcgcaca ctcgatgaaa tggcgcagga cacctggcac tggcagtcac gccatccaca
     8281 gggatatccc gattaaggaa cgaccatgac gcaatttaat cccgttgatc atccacatcg
     8341 ccgctacaac ccgctcaccg ggcaatggat tctggtttca ccgcaccgcg ctaagcgccc
     8401 ctggcagggg gcgcaggaaa cgccagccaa acaggtgtta cctgcgcacg atccagattg
     8461 cttcctctgc gcaggtaatg tgcgggtgac aggcgataaa aaccacgatt acaccgggac
     8521 ttacgttttc actaatgact ttgcggcctt gatgtctgac acgccagatg cgccagaaag
     8581 caacgatcct ttgatgcgtt gccagagcgc gcgcggtacc agccgggtga tctgcttttc
     8641 accggatcac agtaaaacgt tgccagaact gagcgttgcg gcattgacgg aaatcgtcaa
     8701 aacctggcag gagcaaaccg cagagctggg aaaaacgtac ccgtgggtgc aggtctttga
     8761 aaacaaaggt gcggcgatgg gctgctctaa cccgcatccg cacggacaga tttgggcaaa
     8821 tagcttcctg cctaacgaag ctgagcgcga agaccgcctg caaaaagaat attttgccga
     8881 acagaaatca ccaatgctgg tggattatgt tcagcgcgag ctggcagacg gtagccgtac
     8941 cgttgtcgaa accgaacact ggttagccgt tgtgccttac tgggctgcct ggccgttcga
     9001 aacgctactg ctgcccaaag cccacgtttt gcggatcacc gatttgaccg acgcccagcg
     9061 cagcgatttg gcgctggcgt tgaaaaagct gaccagtcgt tatgacaacc tcttccagtg
     9121 ctccttcccc tactctatgg gctggcacgg cgcaccattt aatggcgaag agaatcaaca
     9181 ctggcagctg cacgcgcact tttatccgcc tctgctgcgc tccgccaccg tacgtaaatt
     9241 tatggttggt tatgaaatgc tggcagagac ccagcgagac ctgaccgcag aacaggcagc
     9301 agagcgtttg cgcgcagtca gcgatatcca ttttcgcgaa tccggagtgt aagaaatgag
     9361 tctgaaagaa aaaacacaat ctctgtttgc caacgcattt ggctaccctg ccactcacac
     9421 cattcaggcg cctggccgcg tgaatttgat tggtgaacac acggactaca acgacggttt
     9481 cgttctgccc tgcgcgattg attatcaaac cgtgatcagc tgtgcaccac gcgatgaccg
     9541 taaagttcgc gtgatggcag ccgattatga aaatcagctc gacgagtttt ccctcaatgc
     9601 gcccattgtc gcgcatgaaa actatcaatg ggcgaactac gttcgtggcg tggtgaaaca
     9661 tctgcaactg cgtaacaaca gcttcggcgg tgtggacatg gtgatcagcg gcaatgtgcc
     9721 gcagggtgcc gggttaagtt cttccgcttc actggaagtc gcggtcggaa ccgtattgca
     9781 gcagctttat catctgccgc tggacggcgc acaaatcgcg cttaacggtc aggaagcaga
     9841 aaaccagttt gttggctgta actgcgggat catggatcag ctaatttccg cactcggcaa
     9901 gaaagatcat gccttgctga ttgactgtcg ttcactgggg accaaagcag tttccatgcc
     9961 gaaaggtgtg gctgtcgtca tcatcaacag taacttcaaa cgtaccctgg ttggcagcga
    10021 atacaacacc cgtcgtgaac agtgcgaaac cggtgcgcgt ttcttccagc agccagccct
    10081 gcgcgatgtc accattgaag agttcaacgc tgttgcacat gagctggacc caatcgtggc
    10141 gaaacgcgtg cggcatatcc tgactgaaaa cgcccgcacc gttgaagctg ccagcgcgct
    10201 ggagcagggc gacctgaaac gtatgggcga gttgatggcg gagtctcatg cctctatgcg
    10261 cgatgatttc gaaatcaccg tgccgcaaat tgacactctg gcagaaatcg tcaaagctgt
    10321 gattggcgac aaaggtggcg tacgcatgac cggcggcgga tttggcggct gtatcgtcgc
    10381 gttgatcccg gaagagctgg tgcctgccgt acagcaagct gtcgctgaac aatatgaagc
    10441 aaaaacaggt attaaagaga ctttttacgt ttgtaaacca tcacaaggag caggacagtg
    10501 ctgaacgaaa ctcccgcact ggcacccgat ggtcagccgt accgactgtt aactttgcgt
    10561 aacaacgcag ggatggtagt cacgctgatg gactggggtg cgactttact ttcagcccgt
    10621 attccgcttt ccgatggcag cgtccgcgag gcgctgctcg gctgtgccag cccggaatgc
    10681 tatcaggatc aggccgcgtt tctgggggcc tctattggtc gttatgccaa ccgcatcgcc
    10741 aatagccgtt atacctttga cggtgaaacc gtgacccttt cgccaagtca gggcgttaac
    10801 cagctgcacg gcggcccgga agggttcgac aaacgtcgct ggcagattgt gaaccagaac
    10861 gatcgtcagg tgctgtttgc cctgagttca gatgatggcg atcagggctt cccgggtaat
    10921 ctcggcgcaa cggtgcaata tcgtctgacc gacgataacc gtatctccat tacttatcgc
    10981 gccacagttg ataaaccttg cccggtgaat atgactaatc acgtctattt caatcttgac
    11041 ggcgagcagt ctgacgtgcg caatcacaag ttgcagattc tggcggacga atatctgccg
    11101 gttgatgaag gcggcattcc gcacgacggc ctgaaatctg tcgccggaac gtcttttgat
    11161 ttccgcagcg ccaaaatcat cgccagtgag tttcttgccg acgacgatca gcgcaaagtg
    11221 aaaggttacg atcacgcatt cttgttacag gccaaaggcg atggcaagaa agtggcggcg
    11281 catgtctggt cagcagatga aaaattgcag ctgaaggtct acaccaccgc tccggctctg
    11341 caattctact ccggcaactt cctcggcggc acaccgtcgc ggggaacaga accttacgcc
    11401 gactggcaag ggctggcgtt ggaaagcgag tttctgccgg acagcccgaa ccaccctgaa
    11461 tggccgcaac cggactgctt cctgcgtcct ggcgaagagt attccagcct gacggaatat
    11521 cagtttattg ctgagtaatg ttaagccctc gtcatgaggg ctttatctca tattgctcaa
    11581 atcaccagca aacaccgaca tatttgcaac tcaatattca caacaacctt acactgcgcc
    11641 actattttcg ctatggttat gcgtaagcat tgctgttgct tcgtcgcggc aatataatga
    11701 gaattattat cattaaaaga tgatttgagg agtaagtata tggctgtaac taagctggtt
    11761 ctggttcgtc atggcgaaag tcagtggaac aaagaaaacc gtttcaccgg ttggtacgac
    11821 gtggatctgt ctgagaaagg cgtaagcgaa gcaaaagcag caggtaagct gctgaaagag
    11881 gaaggttaca gctttgactt tgcttacact tctgtgctga aacgcgctat ccataccctg
    11941 tggaatgtgc tggacgaact ggatcaggca tggctgcccg ttgagaaatc ctggaaactg
    12001 aacgaacgtc actacggtgc gttgcagggt ctgaacaaag cggaaactgc tgaaaagtat
    12061 ggcgacgagc aggtgaaaca gtggcgtcgt ggttttgcag tgactccgcc ggaactgact
    12121 aaagatgatg agcgttatcc gggtcacgat ccgcgttacg cgaaactgag cgagaaagaa
    12181 ctgccgctga cggaaagcct ggcgctgacc attgaccgcg tgatccctta ctggaatgaa
    12241 actattctac cgcgtatgaa gagcggtgag cgcgtaatca tcgccgcaca cggtaactcc
    12301 ctgcgtgcgc tggtgaaata tcttgataac atgagcgaag aagagattct tgagctgaat
    12361 atcccgactg gcgtgccgct ggtgtatgag ttcgacgaga atttcaaacc gctgaaacgc
    12421 tattatctgg gtaatgctga cgagatcgca gcgaaagcag cggcggttgc aaaccagggt
    12481 aaagcgaagt aaacgtcatt cgtttaaaat gagaaagccg actgcaagtg agtcggcttt
    12541 tttgttgcta acaatggagc acattgcctg atgcgacgct tcgcgactta tcaggcctgt
    12601 ggtgattcat cggatacgcc actctgacgg cgcatccgac aattaaacct tacccgcgac
    12661 gcgcttttac tgcattcgcc agttgacgta acagagcatc ggtatcttcc cagccgatgc
    12721 aggcatcggt gatgctctta ccgtaggcca gcggctcccc gctctcgagg ctctgattgc
    12781 cttccaccag atggctttcc accatcacgc caataatggc cttttcgcca ccggcaatct
    12841 gctggcaaac gtcagcacaa acatccatct gctttttgaa ttgtttggac gagttagcat
    12901 ggctgaaatc gatcatcacc tgtgctggca ggcctgcttt gttcagccct tctttcactt
    12961 cagcaacgtg cttcgcgctg tagttaggct ctttaccgcc gcgcagaatg atatggcaat
    13021 cgccgttacc gctggtattc acaatcgccg aatgccccca tttcgttacg gacaggaagc
    13081 agtgcggcgc accggcggca ttaatggcat cgatagccac tttaatcgta ccgtcggtgc
    13141 catttttgaa gccgactgga caagaaagcc ctgatgccag ttcgcggtgc acctgcgatt
    13201 cggtggtacg tgcgccaatt gcgccccagc tcatcaggtc agcgagatat tgtggggtga
    13261 tcatatcgag aaactcaccc gccgctggca gaccgctgtc gttaatatca agcagcaatt
    13321 tacgggctat acgaagaccg tcgttgatct ggaagctgtt atccatatgc ggatcgttaa
    13381 tcagcccttt ccagcccacc gtggtacgcg gcttttcaaa atagacgcgc attacgattt
    13441 ccagctcatc tttcagctct tcacgcagcg ccagcaagcg agtggcatac tctttagccg
    13501 cgacaggatc atgaattgag cacgggccaa tcaccaccaa caggcgatca tcattacctt
    13561 tcaggatctt atggatcgct tttcgggcat gggcaaccgt attcgcggca ttttcagtag
    13621 cggggaattt ttccagcaat gcgacaggag gaagtaactc tttgatttct ttgatgcgta
    13681 aatcgtcgtt ctgataattc atgtctgttc cagtgttgcc atacttatct tagtgaatgc
    13741 aatacttcca atctatatct tccgtcagaa tgtgtaaacg gggttttaca ttatgaacgg
    13801 attaatcctg gaattagcaa gaaaaacgcc agattgtcgc gaaaaacgag atctctccta
    13861 caatttctaa ctgtaactcc tttgtttgtt aattatttca agattctctg ctgcgtttca
    13921 taaactggct gaaatcttaa accaatgcct tatattcacc tgcaaatgca ctgttggaag
    13981 aggttatccg acataacgac cataacagga gcatcctatg aaaatgacaa aactggccac
    14041 attatttctg actgccactc taagccttgc cagcggtgcc gcactggctg ccgatagcgg
    14101 agcgcaaact aataacggcc aggcaaacgc cgcaactgat gcgggccagg tagcccctga
    14161 cgcccgtgaa aatgtcgcgc caaataacgt cgacaataac ggggtaaata ccggttctgg
    14221 cggcacaatg ctgcattcgg atggttcttc aatgaacaat gacggaatga ccaaagatga
    14281 agagcacaag aacaccatgt gcaaagatgg tcgatgtccg gatatcaata aaaaggtaca
    14341 aaccggtgat ggcatcaata atgatgtcga taccaaaacc gacggtacca cgcagtaacc
    14401 ctgcaaaata gccaataatg ggagagcgga gtctctccct tttaattttt cacttctaaa
    14461 agcagtatga tgtcataaag ttaagtgaga ataattaagg gatgactcgt catggcgcac
    14521 tcacactcac acacgtcctc acacctgcca gaagataata atgctcgtcg cttgttgtat
    14581 gctttcggcg tgactgccgg gtttatgctg gtagaagtcg ttggtggttt tctttctggt
    14641 tctctggcat tgctggccga tgcgggtcat atgttgaccg atactgccgc cctgcttttc
    14701 gccctactcg ccgtgcaatt ttcacgtcgt cctcccacca ttcgccacac tttcggttgg
    14761 ctaagactga ccacgctcgc ggcgtttgtg aatgccatcg ccctcgtggt aattaccatt
    14821 ttgattgtct gggaggcgat agaacgcttc cgcacgccgc gtccggtcga gggcggcatg
    14881 atgatggcaa ttgccgtggc tgggttgctg gcaaatatac tttctttctg gttacttcat
    14941 cacggcagcg aagagaaaaa cctcaacgta cgagcagcgg cattgcatgt gctcggggac
    15001 ctgttgggtt cggttggggc tattattgcc gcgttgatta ttatctggac cggctggaca
    15061 cctgctgacc ccattctctc gatagtggtg tcgcttctgg ttctgcgtag cgcgtggcga
    15121 ctgttgaaag atagcgtgaa tgaattactt gaaggtgcac cggtatcgct ggatatcgct
    15181 gaactgaagc gtcgtatgtg ccgggaaatc ccggaagtcc gcaatgtgca ccatgtacat
    15241 gtatggatgg taggtgagaa gccggtgatg acgctgcatg tgcaggtgat cccgccacac
    15301 gctcacgatg ccttgttgga tcagatccaa cactacctga tggatcacta tcagattgag
    15361 cacgccacca ttcagatgga atatcaacct tgtcatgggc cagactgcca cctgaatgaa
    15421 ggggtgtctg gccattcaca tcatcaccat taatgggaca gcgcgcatga gcctctttca
    15481 cgtgcgctgt tgatccacat ccgactgccg ttgagcgcaa taaaggtcag gatgatgtac
    15541 tccagagaca tggcgtaaac gccctgaagt gcaaaaataa cgacgctaat cacgttaata
    15601 atcacccaca acagccagtt ttccacatac ttacgcgtca tcagaagcat tgccacgata
    15661 gataacacca tcatgcatga atcccagaac gggaaagcgt ccggttgcag ttcaggcatc
    15721 acaacctgta atcctaatgc ttgcatgatc atgactgcca cgcgggtcaa aaatgcaaac
    15781 accggattga taaataccgt catcagacca atcgaaacaa cgcaaaccgc caaccagctg
    15841 agcgccttcg gcaatggtaa ccagcgaatt ttcaactccg cctcgttctg actggtttgt
    15901 cgcgaccacg cataccaacc gtaaatattc gcggcaaaga aaaacacctg taatagcagg
    15961 ctggcataca gctgaatctg aaagaaaata atgccaaaca aggtgacgtt gatcaggcca
    16021 aagaagtagt tgctgatctt ctccagactg gcaaggccaa tacacagcaa cccggcgatc
    16081 gtgcctaccg cttcgatcca tgagagatca taaccgcctg ctcctattgg tatatgtacc
    16141 aggatattct gcacactaaa aaaatccatc tttcccccaa agcgtaacgt tacgccttat
    16201 tattcgttat ccacgtagtg tagccgcaaa atccagcata cgattgagcg gcaccagcgc
    16261 cctctctcgc agcctttcat caacatgaac ctcgtgattg cttccttcct gttctaatgc
    16321 ctctgcgatg gcctgaaggc cattcatggc catccacgga caatgcgcgc agctgcggca
    16381 ggttgcaccc tcacctgcgg ttggtgcttc cagtaactct ttatctggca ccgcctgctg
    16441 cattttgtag aaaatacccc gatcggttgc cacaataagc ctctgatgtg gcaatgtttt
    16501 cgcagcagcg atcagttgac tggtggaacc gaccgcatcc gccatatcga caatagcttg
    16561 tggtgattct ggatgcacca gtatggcagc atccgggtat tcttcttgca agcgggttaa
    16621 cgcctgagtc ttaaattcat catgcacaat acaggcaccc tgccagcata gaatgtctcc
    16681 acccgtctgt ttttgcacgt aacgccccag atgtttgtcg ggtgcccaga tgattttttc
    16741 acccaaacta tcaagatgat caataagttc gacggcaatg cttgaagtta ccacccaatc
    16801 tgcgcgcgct tttaccgcag cagaagtgtt ggcgtagacg acgacagtac gatcgggatg
    16861 ggcatcgcaa aatgcgttaa attcttcaac agggcagccg agatccagtg aacattcagc
    16921 ctgaagtgtc ggcatcagaa ttgttttttc cggactgaga attttggcgg tttctcccat
    16981 aaatctcacc ccagcgacta acaaagtaga agcgggatgc tttgcaccga agcgcgccat
    17041 ttccagagaa tcagaaatac agccaccggt ttcttctgcc agttgttgaa tttcgggatc
    17101 ggtatagtag tgggcaacca tcaccgcatt acgttctttt agcagacgtt ttatcttctc
    17161 gcggtaatac gctttttcat caatgcttaa cggcgtcggc ttcgggggga aaggataaat
    17221 cgccgtgtct ggatcaaaca ttacgctcat cttaccatct cgttttacag gcttaacgtt
    17281 aaaaccgaca ttagcgtaat attcgctgtt atcggtgtaa tttgttttat atgctaaaca
    17341 agatagtcga atggtgggga aaagtcactc gaattacgcc taattccacc gacgtagagt
    17401 tgcttgcaca gtaagctctg acgatgtcat caggtttaca aagtgaaatt gaggatgcct
    17461 gaatagcaaa aaagcgcctt tagggcgctt ttttacattg gtgggtcgtg caggattcga
    17521 acctgcgacc aattgattaa aagtcaactg ctctaccaac tgagctaacg acccatacgg
    17581 gtgttacctg aaagatttct actcggggcc aatctttaag attggtgtgt cgtgcaggat
    17641 gactcgcttc gcttgcccta cgggccgttg ctggcgcaac gttatccttc acgcttaaca
    17701 tctgagtttg atgttaaaat tggtgggtcg tgcaggattc gaacctgcga ccaattgatt
    17761 aaaagtcaac tgctctacca actgagctaa cgacccgagt ggtgggtgat gacgggatcg
    17821 aaccgccgac cccctccttg taagggaggt gctctcccag ctgagctaat cacccgataa
    17881 tgcgctggat actacaaact acttccaccg aacccatcgt aattagtggt gggtcgtgca
    17941 ggattcgaac ctgcgaccaa ttgattaaaa gtcaactgct ctaccgactg agctaacgac
    18001 ccggtggtgg gtgatgacgg gatcgaaccg ccgaccccct ccttgtaagg gaggtgctct
    18061 cccagctgag ccaatcaccc aatactacgc tggatactac aactaactat gttagtggtg
    18121 ggtcgtgcag gattcgaacc tgcgaccaat tgattaaaag tcaactgctc taccaactga
    18181 gctaacgacc cactttttcg ttgctttcgg tttgtttgat atcccgtggc aacggcggca
    18241 tatattactg atttcagact tgagcgcaac aaaaatttcg atgcagatca ctcaactgct
    18301 tatgattcgc acgacacgac cagaaataat gcaacttctg gtcgtgtgtt atgcattaca
    18361 tcgcgttcag acgtttttgt gcctgtttag cgccatcagt accagggtat ttactgataa
    18421 cctgctggta tacggctttc gcttttgcgg tgtcaccttt gtcctgcatg atgacgccga
    18481 ctttaaacat cgcatcagca gcctttggtg acttcggata gtttttcact accgaagcaa
    18541 aatagtacgc cgcatcatct tttttaccct tgttgtagtt taactgaccc agccaataat
    18601 tggcgtttgg caggtaagtt gaatcagggt aatttttgat gaaattctga aatgccacca
    18661 ttgcgtcatc ctggcgggat ttatcctgca ccagcgcaat agctgcattg taatccgtgt
    18721 ttgcatcgcc gcttttcacc ggcgcgccag cattcgcagt accagcatca gctgtcggcg
    18781 tcgttgatgc cgccgcaccg ctttgatcgc tgctggttga ttgcgccgct gcaccaccgc
    18841 tgctgaggct gtcgatctgc aacaggatct gcttttgccg ctccacgacc tgattcagtt
    18901 gatactgatt ttcctgaatc tgaccacgca gggaatcaat atcggattga ttatcagaaa
    18961 gttgttgctg gagttgggtt aaaagctggc tgtgagcatt agaaatacgc tcaagttgag
    19021 tgacgcggtc ttcgaccgag cctgagccga cactactgat tggtgcctga gcaaaagcgg
    19081 cccagggggc cgctatacca accagtaacg acagactcaa tagttgatgt ctgaagttac
    19141 tgctcatgca attctcttag taaaccagta ccgcacgacg gtttttggag tatgccgctt
    19201 cgtcatgacc cagtactgca ggtttttctt taccgtaaga aacgatggag atctggtctg
    19261 cagaaacgcc tttaccctgc aggtacatct taacggcgtt cgcacgacgt tcacccaggg
    19321 agatgttgta ttccggagta ccacgttcgt ccgcgtgacc ttctacggtg actttgtaag
    19381 acgggttgct acgcaggaag tttgcatgtg catccagcat ttgagcgaag tcagaacgga
    19441 tatcgtactt gtccagatcg aagtaaacga tgttgttctg ctgcagctgt tgcatttgca
    19501 gacgagcctg ctcttcggaa gacatgttgc cgttgccgcc gttcgcatcc ataccagtgc
    19561 cggcacccag catgccttcg ctgccgtcat tgctggcgtt cttgttggaa gaacatgccg
    19621 caattgccat aacaggcaga gcaatcatca gccctttcag cactttgttc agttgcattt
    19681 caatgattcc tttactattc aattaattat tatcacagat acggcgacca ggcagggaat
    19741 ttgacctgtc catcagttgc cggaagacgc gctttgaaac gcccatctgt agaaaccaaa
    19801 ttcagcacgg atcccatccc ctgagaagag ctgtagatta ccatagtgcc attaggtgcc
    19861 agacttggcg tttcatccag gaacgtggac gacagaactt gtacgcctcc cgttgccaga
    19921 tcttgtttgg caatgtgctg ctgcccacca ttggagctga ccattaccat aaatttaccg
    19981 tcgctgctga catccgcatc ctggttctgc gaaccttccc aggtaatacg ttgtggcgca
    20041 ccgccgttga tattcacttt ataaacctgc ggacgaccgg cctggtcaga agtaaatgcc
    20101 aggttctggc tatccgggaa ccaggtcggt tcggtattgt tactgcgacc atcagtcacc
    20161 tggcggatct gaccagaagc caaatccatt acgtacaggt tcagactacc ggttttcgac
    20221 aaggcgaatg ccagtttgct gccgtctggc gagaatgcag gtgcaccgtt gtgacgcggg
    20281 aatgaagcca cctgacgtac agcgccattt gccagcgtct gaataaccag cgcggaacga
    20341 ccgctttcga aggtcacata agccagttta gaaccgtctg gtgaccacgc cggagacatc
    20401 agcggctgcg gtgaacggtg aacgacaaac tggttgtaac cgtcatagtc agatacgcgc
    20461 agttcatacg ggaactgacc gccgttggtc tgaacaacgt aggcaatacg ggtacggaac
    20521 gcacctttaa tgccggtcag tttttcaaac acttcatcac tggcggtatg accagcataa
    20581 cgcagccact gcttgttcac tttgtacgag ttctgagcaa gtacagtacc cggtgcgccg
    20641 ccagtgtcaa caagttgata agcaacattg taagaaccat ccggattcgg agtgacctga
    20701 ccgacaacta cagcgtcaat gcccagtgcg gaccatgcag atggttgtac ttcctgcgca
    20761 ctacccggct gctgtggcag acgagcgcga tctaacggat taaatttacc gctgttacgc
    20821 aagtcagcag caacgatgcc gccaatatct tcaggtgccg caccaggccc cgcccactgg
    20881 aaaggaacaa caccaatagg acgaccggaa tctacaccgc tgtcgatcac aatgcggact
    20941 tcagcatgca gaactgatgc ccacagtatg agaaaaccaa atgctactcg taatgcctgc
    21001 ttcatcatat ctcccttatc tggaccgatg gcccacgata atttagcaga atgttaacaa
    21061 actaaaatac acaaaactac cagaaccccg tggcaaccgg tgcctgatgt tgaccgtccg
    21121 aacagtcaac atcgcgatta cggtttgaag tccaatggcg cgtttttgaa cacttcatat
    21181 actgcctggc ttggtggttt cgggatcttc gcaagtttag ctgctgccaa cgcagcctga
    21241 caaagtgcgg gatcgccacc ttcaggtttg atatccagta acataccatc gggtgccagt
    21301 tttatgcgca gcgtacaggt tttgcctgca taggacgatg cgtcatagaa cttactttcg
    21361 atagcagatt taatctgccc ggcatagtta ttgatatcgg cccctgatgc gccattgttt
    21421 ttagaattac cactcccggc aggcgaagca ttgttccctt tcgcccctcc ccccgttttc
    21481 ggtgcattct taccagagct tagctcaccg aaaatatcat ctgcctctgc ggcggctttt
    21541 tctgccgctg ctttcttatc agctgctgcc ttttcagcag ccgctttttc tgctgctttt
    21601 ttgtcggctg cagctttctt atcagctgca gccttttcag cagccgcttt cttctcagct
    21661 tctgctttgg ctttttcagc agcttcagtt gccgctttct ttcttgcttc agctgcagct
    21721 gcttctgccg cttccgcttt cttcttcagt gccgcagcgg ctgcctcggc ttttttctgc
    21781 gctgcggctt tggcggcttc tgcttctgct tttttctttg cgtctgcagc cgctttcttc
    21841 gctgcttctt ccgcagcttt agcatctgct tcggccttcg ctttagcatc tgccgccgct
    21901 ttcgctgccg cctcttcagc ttgcttctgc tttaactcgg cctgttttgc ggcttcttca
    21961 gcctgctttt tctgctcctg agccgctaac cgctctttct caagttgctt caggcgttcc
    22021 tgttcagccg cttgtttctc acgcagttct tcagcagcct gctgttcctt catcttgcgc
    22081 tgttcatcag aacgcttcgc gcttgattcc tggctttgca tgcgtttgta ctgctcaact
    22141 accgcacctg aatcaaccat gacagcgtcg atggacgaac caccgccgcc tccggctgaa
    22201 gcttctatat tctcatcgaa cgaactccag atcagcgccg caaataagat gacatgcagc
    22261 actgctgaaa taattatcgc ccgcttgagc ttgtcgtttt gttcggttgc ctttgacact
    22321 ctcggtttcc aaaaactgtt cgcctgttac ccgctctctt tcaagcaagg gaaacgcaga
    22381 tgtttagata ggctgcgtca ttaaaccaac cgatttcaca cccgcactat gtaacaagtt
    22441 cagtgcttta attatttcat cgtaaggcac atcttttgcg ccaccgatca gaaagaccgt
    22501 tttcgggttg gccttgaagc ggctggacac ttccgccacc acctgctctg gtggtaaacg
    22561 ctccaggcga tctttctcaa ccaccacggt gtactgacca ataccagaca cttcaacaat
    22621 cactggcgga ttatcgttac tgctcaccgc ctgtgattca gtagcgtctg gcagatcgac
    22681 ctccacgctc tgggtgatga tgggcgctgt cgccatgaag atcagcaaca gcaccagcag
    22741 tacgtccagc aacggtacaa tgttgatttc ggacttaagt tcgcgacgac ctcgtccacg
    22801 cgctctggcc atgacttacc ccttattgct ctcgctaacg gtaaacgcct ggcggtgcag
    22861 aatcgcggta aactcttcca taaagttgtc gtaattcagt tccagtttgt ttacgcgctg
    22921 gttgaggcgg ttgtaggcca taactgccgg gatagcggca aacagaccaa ttgcagtcgc
    22981 aatcaacgct tctgcgatac cgggcgcaac catttgcagt gttgcttgtt ttaccgcccc
    23041 gagggcgata aaggcatgca tgatccccca gaccgtacca aacagaccaa tatacgggct
    23101 gatggagcca accgtaccga ggaacggaat gtgcgtttcc agattttcaa gttcacggtt
    23161 catggagata cgcatagcac gcgacgcccc ttccactacg gcttccggcg catggctatt
    23221 ggcacgatgc aggcgcacaa actctttgaa cccgctgtaa aatatttgtt ccgaaccagt
    23281 cagattatcc cgtttcccct gactctcttg atagaggcga gagagttcga ttccagacca
    23341 gaatttatct tcaaacgctt cggcttcgcg cgccgctgcg ttaagaatac gggtccgctg
    23401 gataataatg gcccaggatg cgattgaaaa accaatcaaa atcaacatga taagtttaac
    23461 cagaaggcta gccttcagga acaaatcaag gatattcatg tcagtcactg cttaaactcc
    23521 gcgacaatag acttgggaag cgcacgaggc ttcattttga gtgggtcaac gcaaacaacc
    23581 agaacctctg cttcattcag caaagtattc tcggcgttga caatacgttg cgtgaaaacc
    23641 aaagaggtgc cacgcattga tgttatttca gtctgtattt cgagcatatc gtcgagccgc
    23701 gcaggtgcgt aatattccac cgtcatttta cgtaccacaa aggcaacgcg ttcagccatc
    23761 agcgcctgct gactgaagtg atgatgacgc agcatctctg tgcgtgctct ttcataaaaa
    23821 gcgacgtaac tggcgtggta caccacacca ccggcatcgg tatcttcata gtagacgcga
    23881 gccggccatc gaaacagcgt tgtattcact ttacatcccg gtaatgcaac aaaagttaga
    23941 gcttttaaac gctgctacta tacgcgcgcg attgaggttt gggaatgagg gcaagttaag
    24001 ggagcgtaaa aatttatggg cctggagcgg cccataattt tttaaagaga attctgattt
    24061 aaaagaagaa gaaaatcagc ccgataatga gaacaatatc ggcaagcaat gggcaaaaaa
    24121 tcccttgcca aagaaccttc tgcggacgaa agcccacgcc gtgaatcaca ccagcacaga
    24181 cggcccacat cagcaataaa ccatgccaga tttccagttc actggtcttc gcggcaaaac
    24241 gagatgggtc ccaaaacata catcctgcta acagaagcgc catcacgaag gaaagcgccc
    24301 gcagggggcg cttgtccatt accgcataca aggtcgcgat aatcttactc atcagatgtc
    24361 ttcttgaccg gctttgcctg attcgacgtg ttcaagcgcc agcgcggtga ttaccccaaa
    24421 cgaacaggca agaagcgttc ccagaatcca tgcgaaatac cacattttta gctccttact
    24481 tagtacagag agtgggtgtt acgttcaata tcttctttgg tgatacgacc gaacattttc
    24541 cagtaacacc aggcggtgta gagcagaatg atcggtacca gaaccaccgc aacccaggtc
    24601 atgacgttaa gcgtcagctg gctggaagtt gcatcccaca ttgtcagact tgcgttcatc
    24661 atggtgctgg acggcatcac aaacgggaac attgcgatac cggctgtcag gatgatgcag
    24721 gccagcgtca gggaggagaa cacaaacgcc cacgcggctt tatccatacg tgcagtcagg
    24781 atggtcagca gcggcagaac cacacccagt gccggaatag cccacagaat tggcgtgttg
    24841 ttgaagttaa ccagccatgc gccagcttca cgaaccactt ctttattcag tgggttagag
    24901 gctgcgtaat ggtccattgt cgatttcacg acataaccat cgataccgta catcacccat
    24961 acgccagcca gtgcgaaaca gaccagtgtc accagcgcag ccacctgagc cgttgcacgg
    25021 gtacgcaggt gcagttcgcc cacggtacgc atttgcagat aggttgcgcc ctgagtaatg
    25081 atcatcccta cgctcaccac gcctgccagc aggccgaacg ggttaagcaa ctggaagaag
    25141 ttaccggtgt agtacagacg cagatattca tcaacgttga acggtacgcc ctgcaacagg
    25201 ttaccgaacg caacaccaat taccagcggc ggaacgaagc taccaatgaa gatgccccag
    25261 tcccacatgt tacgccagcg ggtttcttca atcttggagc ggtagtcaaa accgaccgga
    25321 cggaagaaca aagacgccag cacgaggatc atcgccacat agaagccgga gaacgcagcg
    25381 gcatagacca tcggccaggc agcaaagagt gcgccgcccg cggtgatcag ccaaacctgg
    25441 ttaccgtccc agtgtggtgc aatggagtta atcataattc gacgctcggt gtcgttacga
    25501 ccgaggaaac gggtgagcat gcccaccccc atgtcgaaac cgtcagtgac tgcaaaacca
    25561 atcagcagaa cgccaaccag cagccaccag ataaaacgca atacttcata atcgatcatt
    25621 tgacgactcc tgtcttagcg tgccggctga gtagtcgtgg aagactgctc aaagtgatag
    25681 cgaccggttt tcaggctgct tgggccgagg cgtgcaaatt tgaacattaa gaacaattct
    25741 gccaccagga acagggtata caggccgcaa atcagcacca ttgagaagat gagatcgcct
    25801 gcggtcagtg acgaattcgc cacagctgtc ggcagcactt caccgatagc ccacggttgg
    25861 cggccatatt cagccacgaa ccagcccgct tctacagcaa tccacggcag cggaataccg
    25921 tacagcgcgg cgcgcagcag ccattttttc tcgccaatgc ggttgcggat gacactccag
    25981 aaagagagcg cgatgattgc cagcagcagg aagccacacg ccaccataat acggaacgcg
    26041 aagtacagcg gcgctacacg cggaatggag tctttagttg cctgttgaat ctgcgcttca
    26101 gtcgcatcag ccacgtttgg cgtatagcgt ttcagcagca gaccgtaacc gaggtctttc
    26161 ttcatgctat tgaactggtc acgaaccgcc tggtcggtag aaccagaacg cagttgttcg
    26221 agcagagagt acgccttcat cccgttacga atgcgttctt catgctgcac catcagctct
    26281 ttcaggccga taaccggggt atccacggaa cgcgttgcaa tgatgcccag tgcgtaaggg
    26341 atctgaatcg caaatttgtt cgtctcctct tcctgatcag gaatgccgaa cagagtaaag
    26401 gcagcaggcg caggttgcgt ttcccactcg gcttcaatag cagccagttt ggttttctgc
    26461 acgtcgccca tttcgtagcc ggattcatca cccagaacaa taacagacag aacagcagcc
    26521 ataccgaagc tggcagcgat agcaaaggag cgtttagcga aggcgaagtc acgacctttc
    26581 agcatatacc atgcgctgat accgaggatg aacatcgcgc cagtcacata accagacgct
    26641 acagtgtgaa cgaatttcac ctgagcaacc gggttaagca ccagctcgga gaagctcacc
    26701 atctccatac gcatagtttc aaagttgaaa tcggacgcga ttgggttttg catccagccg
    26761 ttcgcaacca gaatccacag tgcggacagg tttgaaccga gcgccaccag ccaggtgaca
    26821 cacatatgct gaactttacc cagacgatcc caaccgaaga agaacagacc tacaaaggtg
    26881 gattcgagga agaaggccat cagaccttcg attgccagcg gcgcaccgaa gatatcccct
    26941 acatagtggg aatagtaaga ccagttagtc ccgaactgga actccatggt cagaccggta
    27001 gccacaccca gagcgaagtt gataccaaac aacttgcccc agaacttggt catatcttta
    27061 taaatctgtt tgccggagag gacgtagacc gtttccataa tggccagcag gaacgccata
    27121 ccgagcgtca gtggcacaaa aaggaagtgg tacatcgcgg tcaaggcaaa ctgtaagcgc
    27181 gacagttcga ctatatctaa catcatgact ccttgctcat cgcatgaaga ctccgagagt
    27241 gaaccccgtt agaaagggtc acacgcatgc cccaatagaa atttgtttga acactttcat
    27301 cataccatgt gaatgcacac aaaaacggcg taaagaaagg ttgcaaacat gttaataaaa
    27361 actcaaattg atcccacgta tatattacgc cgcaaaatcc ttacaataaa caggtttttg
    27421 ttgaagcaaa tttgcatttt tcgacggtga tcaatttata gctaaattac cgcctttcag
    27481 ccaatttgat cgagaacaat ttatctcttt ttgatgccca tttccaagac ttatacattg
    27541 ataaatatca attcctacaa attatgttaa tcatgtttca ataaggtaac tttagtgaca
    27601 tttatgttta aaatgtgtga gttataaggc tgaaattagt ttcggttggc aattaaagat
    27661 aaaaagagac gaagcaaaaa cagcacggtt gaccttaatt ctttttttgg tcactggcta
    27721 atacgacgca gagtttcagg attactaata aaggcataaa tccacccccg ccgatattaa
    27781 catttaatta acttataatt atattataat taactcaccc agggttatta ttttgttaaa
    27841 aataaagcca catatacgtg gcttgagagt gaagataaac gcaaaattac ctgatgcgct
    27901 acgcttgcca gtgtctacat catctctgca atatattgaa tttgcctgct tttgtagacc
    27961 gaataaagcg ttcatgccgt atccggcatg aacaaagcgc cctttgtcaa caatctggcc
    28021 gcgcatatgt ggcttcggtt tgattgctat tcaggcaagc cggtaactga acgtccgtga
    28081 ctggccgggt aaaaaaggcc ccgatagatt tgaaccttga ttttcctcgg tggtaatgtg
    28141 ttcatccatc atcgtttctg agcaagaaat cacctcgcga ctgaaagcaa cagtcgcatc
    28201 acaggttgct gattcagccg gattaaacag ccgtaaaatc acttcttgtc ggtcttcagc
    28261 tttcttaagt gcgcttatca ggcatcccac tgggggcatt ttcaacaaac tataactttc
    28321 cggcacgttg aatccggctt tgttgagctt catcgcatcc catgggattt tgttgtaaca
    28381 ctgtactgga gtcagccatg ctcgcgcctg ctgagctaca ccagcggcgg ttggcgtacc
    28441 ggtataactc aataaactta ggcgacaaga aagcagacca cgtagttgtg agtccgggac
    28501 tggcatttta attcccgaag gccgcccagg ccttaaaagc agatcttctt tgcccagtaa
    28561 gcccacgcca cgcagcaacg taatggcaaa ggttttcttc tcttcaccga tgacttcaaa
    28621 ttcacgtaac ccttcgctaa agacagccat gccgttacgc ccttcctgta aggcaacata
    28681 gttgagcata ttccataccg gaaccggcgc ttctttccag ccttcttgct gccagttgtt
    28741 cattgcactg tcgttcacgg ggcgcgttag cgaaccaaac tgcgtatctg ccagaacact
    28801 gtcggtgtta aaaggtgtag ggaccaggac acgaaggcga tgatcgtcag cctggttatc
    28861 aaggttgata tccacatcaa tacgcctgct gttatgacta agagtgacaa ccaacaccac
    28921 ccctactctg ccagtggatt gccgggcgct gcgttctgac aaattgagcg gcactgccat
    28981 gtcatagcgg ataacagccc tgctctgcca ggcttcatga ataatatcgc attgcggttt
    29041 cgcgttcgct gcggtaatta cccactcttc ttttgcgggt gaatagtcat attcatcacc
    29101 atcatcagag ctttcttcaa
//
LOCUS       DAJVSY010000034        28871 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.034, whole genome shotgun sequence.
ACCESSION   DAJVSY010000034 DAJVSY010000000
VERSION     DAJVSY010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 28871)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28871)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28871
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.034"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(457..2148)
                     /gene="fruA"
                     /locus_tag="OQQ19_001385"
     CDS             complement(457..2148)
                     /gene="fruA"
                     /locus_tag="OQQ19_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIBC"
                     /protein_id="HCS1803063.1"
                     /translation="MKTLLIIDANLGQARAYMAKTLLGAVARKAKLEIIDNPNDAEMA
                     IVLGDSIPNDSALNGKNVWLGDISRAVAHPELFLSEAKGHAKPYTAPVAATAPVAASG
                     PKRVVAVTACPTGVAHTFMAAEAIETEAKKRGWWVKVETRGSVGAGNAITPEEVAAAD
                     LVIVAADIEVDLAKFAGKPMYRTSTGLALKKTAQELDKAVAEATPYEPAGKAQTATTE
                     GKKESAGAYRHLLTGVSYMLPMVVAGGLCIALSFAFGIEAFKEPGTLAAALMQIGGGS
                     AFALMVPVLAGYIAFSIADRPGLTPGLIGGMLAVSTGSGFIGGIIAGFLAGYIAKLIS
                     TQLKLPQSMEALKPILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTANAV
                     LLGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQTYGPMAAIMAAGMVPPLAMGLATMV
                     ARRKFDKAQQEGGKAALVLGLCFISEGAIPFAARDPMRVLPCCIVGGALTGAISMAIG
                     AKLMAPHGGLFVLLIPGAITPVLGYLVAIIAGTLVAGLAYAFLKRPEVDAVAKAA"
     gene            complement(2165..3103)
                     /gene="fruK"
                     /locus_tag="OQQ19_001386"
     CDS             complement(2165..3103)
                     /gene="fruK"
                     /locus_tag="OQQ19_001386"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HCS1803064.1"
                     /translation="MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGIN
                     VAKVLKDLGIDVTVGGFLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGE
                     VTDFNFSGFEVTPADWERFVTDSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQ
                     CPCIIFDSSREALVAGLKAAPWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIA
                     HVVISLGAEGALWVNASGEWIAKPPSVDVVSTVGAGDSMVGGLIYGLLMRESSEHTLR
                     LATAVAALAVSQSNVGITDRPQLAAMMARVDLQPFN"
     gene            complement(3103..4233)
                     /gene="fruB"
                     /locus_tag="OQQ19_001387"
     CDS             complement(3103..4233)
                     /gene="fruB"
                     /locus_tag="OQQ19_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused PTS fructose transporter subunit IIA/HPr
                     protein"
                     /protein_id="HCS1803065.1"
                     /translation="MFQLSVQDIHPGEKAGDKEEAIRQVAAALVQAGNVAEGYVNGML
                     AREQQTSTFLGNGIAIPHGTTDTRDQVLKTGVQVFQFPEGVTWGDGQVAYVAIGIAAS
                     SDEHLGLLRQLTHVLSDDSVAEQLKSATTAEELRALLMGEKQSEQLKLDNEMLTLDIV
                     ASDLLTLQALNAARLKEAGAVDATFVTKAINEQPLNLGQGIWLSDSAEGNLRSAIAVS
                     RAANAFAVDGETAAMLVSVAMNDDQPIAVLKRLADLLLDNKADRLLKADAATLLALLT
                     SDDAPTDDVLSAEFVVRNEHGLHARPGTMLVNTIKQFNSDITVTNLDGTGKPANGRSL
                     MKVVALGVKKGHRLRFTAQGADAEQALKAIGDAIAAGLGEGA"
     gene            4601..5782
                     /gene="setB"
                     /locus_tag="OQQ19_001388"
     CDS             4601..5782
                     /gene="setB"
                     /locus_tag="OQQ19_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar efflux transporter SetB"
                     /protein_id="HCS1803066.1"
                     /translation="MHNSPAVSSAKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTD
                     EVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWN
                     RNYFVLLFVGVFLSSFGSTANPQMFALTREHADKTGREAVMFSSFLRAQVSLAWVIGP
                     PLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMQKELPLATGTVEAPRRNRRDT
                     LLLFVICTLMWGSNSLYIINIPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFA
                     KRLGKRFLMRVAAVGGVCFYAGMLMAHSPAILLGLQLLNAIFIGILGGIGMLYFQDLM
                     PGQAGSATTLYTNTSRVGWIIAGSVAGIVAEIWNYHAVFWFAMVMIIATLFCLLRTKD
                     V"
     gene            complement(5779..6033)
                     /locus_tag="OQQ19_001389"
     CDS             complement(5779..6033)
                     /locus_tag="OQQ19_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HCS1803067.1"
                     /translation="MECRPGCGACCTAPSIFSPIPGMPDGKPANTPCIQLDEQQRCKI
                     FTSPLRPKVCAGLQASAEMCGNSRQQAMTWLIDLEMLTAS"
     gene            6188..6760
                     /gene="yeiP"
                     /locus_tag="OQQ19_001390"
     CDS             6188..6760
                     /gene="yeiP"
                     /locus_tag="OQQ19_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007750416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P-like protein YeiP"
                     /protein_id="HCS1803068.1"
                     /translation="MPRANEIKKGMVLNYNGKLLLVKDIDIQSPTARGAATLYKMRFS
                     DVRTGLKVEERFKGDDIVDTVTLTRRYVDFSYVDGNEYVFMDKEDYTPYTFTKDQIEE
                     ELLFMPEGGMPDMQVLTWDGQLLALELPQTVDLEIVETAPGIKGASASARNKPATLST
                     GLVIQVPEYLSPGEKIRIHIEERRYMGRAD"
     gene            6983..8449
                     /locus_tag="OQQ19_001391"
     CDS             6983..8449
                     /locus_tag="OQQ19_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol dehydrogenase family protein"
                     /protein_id="HCS1803069.1"
                     /translation="MKTIASVTLPHHVHAPRYDRQQLQSRIVHFGFGAFHRAHQALLT
                     DRVLNAQGGDWGICEISLFSGDQLMSQLRAQNHLYTVLEKGADGNQVIIVGAVHECLN
                     AKLDSLAAIIEKFCEPQVAIVSLTITEKGYCIDPATGALDTSNPRIIHDLQTPEEPHS
                     APGILVEALKRRRERGLTPFTVLSCDNIPDNGHVVKNAVLGMAEKRSPELAGWIKEHV
                     SFPGTMVDRIVPAATDESLAEISQHLGVNDPCAISCEPFIQWVVEDNFVAGRPAWEVA
                     GVQMVNDVLPWEEMKLRMLNGSHSFLAYLGYLSGFAHISDCMQDRAFRHAARTLMLNE
                     QAPTLQIKDVDLTQYADKLIARFANPALKHKTWQIAMNGSQKLPQRMLAGIRIHLGRE
                     TDWSLLALGVAGWMRYVSGVDDAGNAIDVRDPLSDKIRELVAGSSSEQRVTALLSLRE
                     VFGDDLPDNPHFVQAIEQAWQQIVQFGAHQALLNTLKI"
     gene            8567..9553
                     /gene="yeiR"
                     /locus_tag="OQQ19_001392"
     CDS             8567..9553
                     /gene="yeiR"
                     /locus_tag="OQQ19_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding GTPase YeiR"
                     /protein_id="HCS1803070.1"
                     /translation="MTRTNLITGFLGSGKTTSILHLLAHKDPNEKWTVLVNEFGEVGI
                     DGALLADSGALLKEIPGGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQIL
                     DLLTAPVYEPWIDLRATLCILDPRLLLDEKSASNENFRDQLAAADIIVANKSDRATPE
                     SEQALQRWWQQNGGDRQLIHSEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVKKGLA
                     ALSLPEHQRWRRSLNSGQGYQACGWIFDADTVFDTIGILEWARLAPVERVKGVLRIPE
                     GLVRINRQGDDLHIETQNVAPPDSRIELISSSEADWNALQSALLKLRLATTA"
     gene            9592..10305
                     /gene="lpxT"
                     /locus_tag="OQQ19_001393"
     CDS             9592..10305
                     /gene="lpxT"
                     /locus_tag="OQQ19_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kdo(2)-lipid A phosphotransferase"
                     /protein_id="HCS1803071.1"
                     /translation="MIKNLPQIVLLNIVGLALFLSWYIPVNHGLWLPIDADIFYFFNQ
                     KLVESKAFLWLVALTNNRAFDGCSLLAMGMLMLSFWLKENAPGRRRIVIIGLVMLLTA
                     VVLNQLGQALIPVKRASPTLTFTNINRVSELLSVPTKDASRDSFPGDHGMMLLIFSAF
                     MWRYFGKVAGLIALIIFVVFAFPRVMIGAHWFTDIIVGSMTVILIGLPWVLLTPLSDR
                     LITFFDKSLPGKNKHFQNK"
     gene            10717..11283
                     /gene="mepS"
                     /locus_tag="OQQ19_001394"
     CDS             10717..11283
                     /gene="mepS"
                     /locus_tag="OQQ19_001394"
                     /EC_number="3.4.17.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional murein DD-endopeptidase/murein
                     LD-carboxypeptidase"
                     /protein_id="HCS1803072.1"
                     /translation="MVKSQPILRYILRGIPAIAVAVLLSACSANNTAKNMHPETRAVG
                     SETSSLQASQDEFENLVRNVDVKSRIMDQYADWKGVRYRLGGSTKKGIDCSGFVQRTF
                     REQFGLELPRSTYEQQEMGKSVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHAST
                     SSGVIISSMNEPYWKKRYNEARRVLSRS"
     gene            11464..13020
                     /locus_tag="OQQ19_001395"
     CDS             11464..13020
                     /locus_tag="OQQ19_001395"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic di-GMP phosphodiesterase"
                     /protein_id="HCS1803073.1"
                     /translation="MFIRAPNSGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYD
                     TLIIDVQKYLDTYFADLKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDK
                     KTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSG
                     VFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIA
                     GIPLTVRLYADDWTWNDVWYAFLLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQ
                     FYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFEL
                     IARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERD
                     MLKEQEATQLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTET
                     ITSPVLDAVLTLAKRLNMLTVAEGGETPEQARWLSEPGVNFMQGYWISRPLPLDDFVR
                     WLKKPYTPQW"
     gene            13102..14916
                     /locus_tag="OQQ19_001396"
     CDS             13102..14916
                     /locus_tag="OQQ19_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311096.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCS1803074.1"
                     /translation="MIVRILLLFIALFTFGAQAQAIKESYAFAVLGEPRYAFNFNHFD
                     YVNPAAPKGGQITLSALGTFDNFNRYALRGNPGARTEQLYDTLFTTSDDEPGSYYPLI
                     AESARYADDYSWVEVAINPRARFHDGSPITARDVEFTFQKFMTEGVPQFRLVYKGTTV
                     KAIAPLTVRIELAKPGKEDMLSLFSLPVFPEKYWKDHKLSDPLATPPLASGPYRVTSW
                     KMGQNIVYSRVKDYWAANLPVNRGRWNFDTIRYDYYLDDNVAFEAFKAGAFDLRMEND
                     AKNWATRYTGKNFDKKYIIKDEQKNESAQDTRWLAFNIQRPVFSDRRVREAITLAFDF
                     EWMNKALFYNAWSRTNSYFQNTEYAARNYPDAAELVLLAPMKKDLPPEVFTQIYQPPV
                     SKGDGYDRDNLLKADTLLNEAGWVLKGQQRVNATTGQQLSFELLLPASSNSQWVLPFQ
                     HSLQRLGINMDIRKVDNSQITNRMRSRDYDMMPRLWRAMPWPSSDLQISWSSEYINST
                     YNAPGVQSPVIDSLINQIIAAQGNKEKLLPLGRALDRVLTWNYYMLPMWYMAEDRLAW
                     WDKFSHPAVRPVYSLGIDTWWYDVNKAAKLPSARQQGE"
     gene            14917..16011
                     /locus_tag="OQQ19_001397"
     CDS             14917..16011
                     /locus_tag="OQQ19_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin C ABC transporter permease YejB"
                     /protein_id="HCS1803075.1"
                     /translation="MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEF
                     GNAGVLPGAGGEGVRASHAQTGVGNISDSNYRGGRGLDPEVIAEITHRYGFDKPIHER
                     YFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV
                     HNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWY
                     QKITDYLWHITLPVLATVIGGFAALTILTKNSFLDEVRKQYVVTARAKGVSEKNILWK
                     HVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTL
                     YIFTLIGLLLNIVSDISYTLVDPRIDFEGR"
     gene            16011..17036
                     /locus_tag="OQQ19_001398"
     CDS             16011..17036
                     /locus_tag="OQQ19_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1803076.1"
                     /translation="MSRLSPVNQARWARFRHNRRGYWSLWIFLVLFGLSLCSELIAND
                     KPLLVRYDGSWYFPLLKNYSESDFGGPLASQADYQDPWLKQRLENNGWVLWAPIRFGA
                     TSINFATDKPFPSPPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVL
                     AGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSL
                     VGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTL
                     TSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLGITAFLSVAILLSLLIFIGEAVRDA
                     FDPNKAV"
     gene            17038..18627
                     /gene="yejF"
                     /locus_tag="OQQ19_001399"
     CDS             17038..18627
                     /gene="yejF"
                     /locus_tag="OQQ19_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin C ABC transporter ATP-binding protein
                     YejF"
                     /protein_id="HCS1803077.1"
                     /translation="MTQTLLAIEDLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGES
                     GSGKSVTALSILRLLPSPPVEYLSGDIRFRGESLLHASDQTLRGVRGNKIAMIFQEPM
                     VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG
                     ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLS
                     IVRKLAHRVAVMQNGRCVEQNYAATLFASPTHPYTQKLLNSEPSGDPVPLPEPASTLL
                     DVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGLALLR
                     LINSQGSIIFDGQPLQNLNRRQLLPIRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH
                     QPTLSAAQREQQVIAVMHEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILD
                     EPTSSLDKTVQAQILTLLKSLQQKLQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG
                     PCARVFAAPQQEYTRQLLALS"
     gene            complement(18631..18975)
                     /locus_tag="OQQ19_001400"
     CDS             complement(18631..18975)
                     /locus_tag="OQQ19_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803078.1"
                     /translation="MTSLQLSIVHRLPQNFRWSAGFAGSKVEPIPQNGPCGDNSLVAL
                     KLLSPDGDNAWSVMYKLSQALSDIEVPCSVLECEGEPCLFVNRQDEFAATCRLKNFGV
                     AIAEPFSNYNPF"
     gene            complement(19308..20491)
                     /gene="bcr"
                     /locus_tag="OQQ19_001401"
                     /pseudo
     CDS             complement(19308..20491)
                     /gene="bcr"
                     /locus_tag="OQQ19_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311101.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter Bcr"
     gene            complement(20519..21214)
                     /gene="rsuA"
                     /locus_tag="OQQ19_001402"
     CDS             complement(20519..21214)
                     /gene="rsuA"
                     /locus_tag="OQQ19_001402"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase RsuA"
                     /protein_id="HCS1803079.1"
                     /translation="MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE
                     HDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLD
                     IDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL
                     TKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGE
                     YRPLTEEEIASVV"
     gene            21363..23123
                     /locus_tag="OQQ19_001403"
     CDS             21363..23123
                     /locus_tag="OQQ19_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HCS1803080.1"
                     /translation="MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL
                     ARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR
                     NLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGW
                     IYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS
                     NGLFSEADLNRELKKQQRITPHIISQIMEFAEKRKGVMIFAATVEHAKEIVGLLPAED
                     AALITGDTPGAERDVLIEDFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY
                     QQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANT
                     FWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE
                     CDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERF
                     RLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQ
                     VREKVFDYEGRFRRAHELRG"
     gene            23248..23532
                     /gene="rplY"
                     /locus_tag="OQQ19_001404"
     CDS             23248..23532
                     /gene="rplY"
                     /locus_tag="OQQ19_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000494192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HCS1803081.1"
                     /translation="MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDH
                     DKVMNMQAKAEFYSEVLAIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA"
     gene            complement(23671..24678)
                     /gene="yejK"
                     /locus_tag="OQQ19_001405"
     CDS             complement(23671..24678)
                     /gene="yejK"
                     /locus_tag="OQQ19_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein YejK"
                     /protein_id="HCS1803082.1"
                     /translation="MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTETVVEMVAELH
                     RVYSAKNKAYGLFSEESELAQTLRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGF
                     VLFCHYRYLAVEYLLVAVLSNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETN
                     PESTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAE
                     RQNVRQQVYSYCNEQLQAGEEIELESLSKELAGVSEVSFTKFAAEKGYELEESFPADR
                     STLRQLTKFAGSGGGLTINFDAMLLGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGG
                     N"
     gene            24860..25087
                     /locus_tag="OQQ19_001406"
     CDS             24860..25087
                     /locus_tag="OQQ19_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YejL family protein"
                     /protein_id="HCS1803083.1"
                     /translation="MPQISRYSDEQVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNL
                     INTSIAPAQRQAIANSFARALQSSINEDKAH"
     gene            25107..26867
                     /gene="pbgA"
                     /locus_tag="OQQ19_001407"
     CDS             25107..26867
                     /gene="pbgA"
                     /locus_tag="OQQ19_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin transport protein PbgA"
                     /protein_id="HCS1803084.1"
                     /translation="MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWP
                     TTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLL
                     IDSEVFTRFHLHLNPIVWQLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKL
                     RSLTRRRRFARPLAAFLFIAFIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFL
                     EKHGLLDAQEYQRRLIEQGNPDAVSVQYPLSELRYRDMGTGQNVLLITVDGLNYSRFE
                     KQMPALAGFAEQNISFTRHMSSGNTTDNGIFGLFYGISPSYMDGILSTRTPAALITAL
                     NQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVRPQSDEQTATQWINWLGRYAQEDNR
                     WFSWVSFNGTNIDDSNQQAFARKYSRAAGNVDDQINRVLNALLDSGKLDNTVVIITAG
                     RGIPLSEDEETFDWSHGHLQVPLVIHWPGTPAQRINALTDHTDLMTTLMQRLLHVSTP
                     ASEYSQGQDLFNPQRRHYWVTAADNDTLAITTPKKTLVLNNNGKYRTYNLRGERVKDE
                     KPQLSLLLQVLTDEKRFIAN"
     gene            26942..27018
                     /locus_tag="OQQ19_001408"
     tRNA            26942..27018
                     /locus_tag="OQQ19_001408"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26976..26978,aa:Pro,seq:ggg)
     gene            27237..28478
                     /locus_tag="OQQ19_001409"
     CDS             27237..28478
                     /locus_tag="OQQ19_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000101915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1803085.1"
                     /translation="MARKTPPLTTVQIKAARPAEKEYTLQDGGGLFLLVKPSGSKLWR
                     FSYYRPSDKKRILLSFGSLDDVSLADARKRRSEYRALISAGTDPQGHEKKKREAEARR
                     QGNTFENVAAAWYQVKISQNLAPNTIKDIWRSLDKYVFPFIGNTPIDTLTARRFVEVL
                     TPIKERGNLETLKRVLQRVNEVMDYAANSGLIDANPAMNVRKAFPSPVKKHMPTIRPE
                     QLPELMQALSVSATERQTRLLIEWQLLTVTRPAEASSTRWDEINLDAKQWTIPAGRMK
                     MRRDHVIPLSGQAMAVLEAMKPISHHRNYVFPSLKDPQQPMNSQTANAALRRMGFAGV
                     LVSHGLRAIFSTAANEEGFEPDVIEAALAHVDTNEVRRAYNRSNYIEKRIVLMRWWGE
                     FVEAAATGVTLASGKRGIRAV"
BASE COUNT         7057 a         7497 c         7184 g         7133 t
ORIGIN      
        1 agcctataat tacgacataa tccttttcgc gcatagcaca tcctctggta aaaaattacc
       61 aaccctgtca atccacaaga atatagatac tgcaaagacg gtttaaacat gtgttcatat
      121 ttaaacatgt gctcatagca tgcatgtttt acgtaaagta aattaccgcc agagaggcaa
      181 aatgggcaga tttgagcagg ctcacaaaat gcgattaaat gcctgaatta caaaagcgag
      241 gaatttgtga cgggatgcac agaacgggaa caataaaaaa ggcagaaaat aatctgccct
      301 tgaggaaata accttagtgt ttgatgaacg tttcaagttt ctactgaaag ataaaaccat
      361 ttaaattcat aaaattacat tcacaaaccg gtcattctct ttgcgctcat caaatgttac
      421 agggcaggaa atttctgccc tgtaacacac cttttattac gctgctttcg ctactgcgtc
      481 cacttccgga cgtttcagga aggcataggc caaacccgcc accagcgtac cggcaataat
      541 tgctaccagg taacccagta ccggcgtaat agcgccaggg atcagcagaa caaacagacc
      601 accgtgcggt gccatcagtt tcgcaccaat cgccattgag attgcgccag tcagcgcccc
      661 acccacgata cagcacggca gcacacgcat cggatcacga gcagcaaacg gaattgcacc
      721 ttccgaaatg aagcacagtc ccaataccag agcggctttg ccaccttcct gctgcgcttt
      781 gtcgaatttg cgacgcgcca ccattgttgc cagacccatt gccagcggtg gcaccatacc
      841 tgccgccata atcgccgcca tcgggccata ggtttgagta ctcagcagac ccacaccgaa
      901 tgcgtacgct gctttgttta ccggaccgcc catgtcagta cacatcatgc caccgaggat
      961 cgcccccagc agaaccgcat tcgcagtccc catggtctgc agccagtgag tcagcccttc
     1021 gagaatgcca gcaactggtt taccgatcag gtagatcatc gccagaccga ccaccagact
     1081 ggaaattagc ggaatgatca ggatcggttt cagcgcctcc atactctgtg gcagtttcag
     1141 ttgcgtactg attaacttcg caatgtaacc agccaggaag ccagcaatta taccgccaat
     1201 aaagccagaa ccggtgctga ccgccagcat accgccaatc agacccggcg tgaggcccgg
     1261 acgatcggca atggagaagg caatataacc tgccagtacc ggcaccatca gcgcaaaggc
     1321 tgaaccaccg ccaatctgca tcagcgccgc tgccaacgta cccggctctt taaacgcttc
     1381 gataccaaaa gcaaaagaaa gcgcgataca cagaccacct gcgacgacca tcggcagcat
     1441 ataagagacg cctgtcagca agtgacggta agcgcctgca ctctctttct taccttcagt
     1501 ggtcgccgtt tgagctttgc ccgccggttc atacggcgtt gcttcagcaa ccgctttatc
     1561 cagttcctgc gcggttttct tcagcgccag accggtagag gtacgataca tcggtttacc
     1621 agcaaatttc gccagatcca cttcgatatc tgccgccaca atcaccagat ccgctgctgc
     1681 gacttcttca ggggtgattg cattgcccgc gccaacagaa ccacgggttt caactttcac
     1741 ccaccagcca cgttttttcg cttcggtttc aatggcttca gccgccataa aggtgtgtgc
     1801 tacgccagtc gggcaagcag tcaccgcaac tacgcgtttc ggaccgctgg cagcaaccgg
     1861 tgctgtcgca gcgaccggcg cagtgtaagg tttcgcatgg cctttggctt cactcaggaa
     1921 cagctcaggg tgcgcaactg cccgggaaat atcacccagc cagacatttt taccgttcag
     1981 cgcgctgtca ttcgggatgg aatcaccgag aacaatcgcc atttctgcgt cgttcggatt
     2041 gtcgatgatt tccagttttg cttttcgcgc caccgcgccc agcagggtct tcgccatata
     2101 ggcgcgtgcc tgaccgagat tagcgtcaat aatcagcagc gttttcatta tgcctctcct
     2161 gctgtcagtt aaaaggttgt aagtcgacgc gcgccatcat tgcggccaac tgcggacgat
     2221 cggtaatacc cacattgctt tgacttaccg ccagggctgc aacagctgtc gccagacgca
     2281 gtgtgtgttc actggattca cgcatcagca agccataaat caggccacca accatagaat
     2341 cccctgcgcc aacggtgctt acgacatcga ctgacggtgg tttggcgatc cattcgccgg
     2401 aggcattaac ccaaagcgcg ccttcggcac ccagtgaaat aacaacatgc gcaatacctt
     2461 gttcacgtag cgcatgtgca gcttcaatca catctttcat ttcaggcagt ttacggcctg
     2521 cccaaatttc caactcgcgg cggttaggtt tcaccagcca cggtgccgct ttcaaacctg
     2581 ctactaacgc ttcacggcta ctatcaaaga taatgcaagg acactgacta cgcaggcgag
     2641 tcatccagtc ggtgaacgct tccgggctga cgcctgacgg taagcttccg ctgacacaga
     2701 ccatatcgaa ctgaccgagc cagctcagag aatcagtcac aaagcgttcc cagtcggcgg
     2761 gggtgacttc aaaacccgag aagttgaagt cggtcacttc gccgtctttt tccgtcagct
     2821 taacgttaat tcgggtgcgc ccctgtacaa cctggaaacg gttggcaatg cccagctcgc
     2881 tgaacagttg ctgaaaacca tcctgattgt ctttacccag gaagccgcca acggtgacat
     2941 caattcccag gtcttttaat actttggcca cgttgatgcc tttacccgcc gcatgcagac
     3001 cggtggtttt caccaggttc acttcgccgc gttcaatttc cgggcagaaa ccaacaaggt
     3061 cataagccgg attaagggtg atcgtagcaa cacgtctgct cattatgcgc cctccccaag
     3121 accagcagcg atagcgtcgc caatggcttt cagcgcctgt tcagcatctg caccctgggc
     3181 ggtaaagcgt aggcgatgac ctttcttaac gccaagtgcc acaactttca tcagactacg
     3241 tccgtttgcc ggtttgccgg tgccatcaag gtttgtcacg gtaatatcac tgttaaattg
     3301 tttaatggta ttgaccagca tggtacctgg acgagcatgc aggccgtgtt cattgcgcac
     3361 cacaaactcc gcgcttaaca cgtcgtcggt cggcgcatca tcgctggtca gcagcgccag
     3421 caacgttgcc gcatctgctt tcagcaagcg gtcagcttta ttgtcgagca ataaatcagc
     3481 gagacgctta agaaccgcga tgggctgatc gtcattcatc gccacactca ccagcatggc
     3541 tgccgtttcg ccgtccacag caaaagcatt tgccgcacgg cttaccgcaa tcgcgctacg
     3601 cagattgcct tcggcgctat cgctcagcca gataccctgt ccgagattca gcggttgttc
     3661 attgatggct ttggtgacga aagtggcgtc aactgccccc gcctctttca gacgcgcagc
     3721 gttcagcgcc tgaagagtca gcagatcgct ggcgacgata tccagcgtca gcatttcgtt
     3781 gtcgagcttc agctgctcac tctgcttttc gcccatcagt aatgcgcgaa gttcttctgc
     3841 tgttgttgct gacttcagtt gttcagcaac ggaatcatcg ctcagtacgt gggtcagctg
     3901 gcgtagcagg cccagatgtt catccgagct ggcagcaata ccgattgcca cgtacgctac
     3961 ctgaccgtca ccccaggtga cgccttccgg gaactgaaat acctgaacgc cggttttcag
     4021 cacctgatcg cgggtgtcgg tagtgccgtg tggaatagca ataccattgc cgaggaacgt
     4081 tgaggtttgc tgttcgcgcg ccagcatgcc attgacgtag ccttctgcta cattaccggc
     4141 ctgcaccagc gccgcagcga cctggcgaat cgcctcttct ttgtctccgg ccttttcgcc
     4201 cggatggatg tcctgtacgg ataactggaa catagttctc ctctcttgct gaattgaaac
     4261 gattcagcct ctatgagaaa aaaagcgcca acctggctta gggttaaaga caagatcgcg
     4321 ctgaaacgtt tcaagaaagc ataatacttc tgtttcagca cgcaaggaaa gccgtaaagt
     4381 tatgagcaaa agtttgatgt gctgcacatt tttttgtcat ttttcctaat tgctgatggg
     4441 aaaatccgtt atcagcaatt tcatttcagc agcgtcagca gccaatcagc aacagtgaaa
     4501 tggcattttg attattcgtg gcgcttttga tttcgctgtc tgtttatttt ctgacaagca
     4561 gcgtaaactc cgcgtcttcc tcttccagtg atagacctgc atgcataact cccccgcagt
     4621 ctccagcgcg aaatcgtttg acctgacctc gacggcgttt ttaatcgttg cctttctcac
     4681 cggtattgcg ggtgctctgc aaaccccgac actcagtatt ttccttaccg atgaagtaca
     4741 tgcccgtccg gcgatggtgg gattcttctt taccggcagc gctgtcattg ggattctggt
     4801 aagtcagttt ctcgctgggc gctctgataa gcgcggcgat cgcaaatcgc tgattgtctt
     4861 ttgctgcctg ttaggcgtgc tggcctgcac cctttttgcc tggaatcgca actactttgt
     4921 tttgctattc gttggcgtct ttcttagcag ctttggctcg accgctaacc cgcaaatgtt
     4981 tgcccttacc cgtgaacatg ccgacaaaac cggacgtgag gcggtgatgt tcagctcttt
     5041 tttacgcgct caggtttcac tggcatgggt cattggccca ccgctggctt atgcgttagc
     5101 gatgggtttc agctttacgg taatgtatct gagcgcagcg gtagcgttta ttgtttgcgg
     5161 cgtgatggtg tggctgtttt taccgtcgat gcaaaaagag cttccgctgg cgaccggcac
     5221 ggttgaagcg ccgcgccgta accgtcgcga tacgctactg ctgtttgtca tttgtacatt
     5281 gatgtggggc tcgaacagcc tgtacatcat caacataccg ctatttatta tcaacgaact
     5341 gcatcttccc gagaaactgg ccggtgtgat gatggggacc gccgccgggc tggaaatccc
     5401 gacgatgttg attgccggat atttcgccaa acgtctgggt aagcgtttct taatgcgcgt
     5461 tgctgccgtg ggtggcgtct gtttttacgc aggaatgctg atggcgcatt cacctgccat
     5521 tctgttgggc ttgcagctgc taaatgctat ttttattggc attctgggcg gcatcgggat
     5581 gctctatttt caggatttga tgcccggtca ggcaggttca gccaccacgc tctataccaa
     5641 cacgtcgcgc gtgggctgga tcatcgcagg atcagtggcg ggcatcgtcg ccgagatctg
     5701 gaattatcac gctgtgttct ggtttgcgat ggtgatgatt atcgccactc tgttttgctt
     5761 actgcggact aaagatgttt aagacgcggt cagcatttcc agatcgataa gccaggtcat
     5821 ggcctgctga cgcgagttac cgcacatttc agcgctggct tgtaagcctg cacagacttt
     5881 cggtcgcagt ggcgaggtga aaattttaca gcgttgctgt tcatcaagct gaatgcaggg
     5941 cgtattggcg ggcttgccat ctggcatacc gggaataggg ctgaaaattg aaggggcagt
     6001 gcaacacgcc ccgcaacccg gacggcattc catacgttgt tctcttaagg ttaaccaccg
     6061 gattgatgag cgcgcacagt accacctttt ttgcaccagc aaaagtgcga ataccacttg
     6121 cccgaaaggc ccgtcgcgag tactttgtcg cgatattttt gacattttcg actacaggaa
     6181 tttttcgatg ccaagagcga acgaaattaa aaaaggtatg gtactgaatt acaacggcaa
     6241 actgctgctg gttaaggata ttgatattca gtcgcccact gcccgcggtg ccgctacgct
     6301 gtacaaaatg cgtttttctg atgtccgtac cgggctgaaa gtagaagagc gtttcaaagg
     6361 tgatgatatc gttgacaccg tgacgctgac ccgccgttac gttgacttct cctatgtcga
     6421 tggcaacgaa tatgtcttta tggataaaga agactatacc ccgtatacct tcaccaaaga
     6481 tcagattgaa gaagagttgc tgtttatgcc agagggcggc atgccggaca tgcaggtgct
     6541 gacctgggac ggtcaactgc tggcgcttga gctgccgcag accgttgatc tggaaatcgt
     6601 tgaaaccgca ccaggcatca aaggggcatc tgccagcgcc cgtaacaaac cggcgacatt
     6661 gagcactggt ctggtgattc aggtaccaga atacttaagc ccgggcgaaa aaattcgtat
     6721 ccatatcgaa gaacgccgtt atatggggcg tgctgactaa cttcagccgc atgcagaaaa
     6781 gggatagctc aggctgcccc ttttttaatt tattatacca atcttctatt ttgcgcttcc
     6841 tgaacacctt acgccctcaa ttttcactcg ttgattgatc gccctcacac ttcatcgcat
     6901 taacaatcca gaccaatttc aattgctgtc atataacttt acactgtcat tgttaattta
     6961 tcgttactaa gacgtgactc ctatgaagac aattgcctcc gttacgctcc cgcatcatgt
     7021 acacgctcca cgctacgatc gccagcagtt gcaatcacgt atcgttcatt ttggctttgg
     7081 cgcctttcac cgcgctcatc aggcgttact gaccgatcgt gtgctgaatg cccagggcgg
     7141 cgactggggg atctgtgaaa tcagcttgtt cagcggtgat caactgatga gccagctccg
     7201 cgcacagaac catttatata ccgtgctgga gaaaggtgcg gacggcaatc aggtgataat
     7261 tgtcggtgcc gttcacgaat gccttaatgc aaaactggat tccttagcgg caattattga
     7321 gaaattttgc gagccacagg tggcaattgt ttccctgacg attaccgaaa aaggctattg
     7381 tattgacccg gccaccggtg cactcgacac cagtaatccg cggattattc acgatctaca
     7441 aacccctgaa gaacctcact ccgcaccggg tattctcgtc gaagcactga aacgccgccg
     7501 tgagcgcggc cttacaccgt ttaccgtgct ctcctgcgac aatattcccg acaatggcca
     7561 tgtggtgaaa aacgcggtgc tgggaatggc agaaaaacgt tcgccagaac tcgccgggtg
     7621 gataaaagaa cacgtcagtt ttccgggaac catggtcgac cgcattgttc cggctgcaac
     7681 cgacgaatca ctggcagaaa tcagccagca tctgggggta aatgatccct gcgcgattag
     7741 ctgcgaaccg tttatccagt gggtggtgga agataacttc gtcgctgggc gtcctgcctg
     7801 ggaagtcgca ggtgtacaaa tggtgaatga tgtcctgcca tgggaagaga tgaaactgcg
     7861 tatgcttaat ggcagccact cttttctcgc ttatctgggt tacctttcag gattcgccca
     7921 tatcagtgat tgcatgcagg atcgcgcatt tcgccatgcc gccagaacat taatgctgaa
     7981 tgagcaagcg ccgacactac aaattaaaga tgtcgattta acacaatatg cggacaagtt
     8041 aattgctcgt tttgctaatc cggcgctgaa acataagacc tggcaaatcg caatgaatgg
     8101 tagccagaaa ttaccgcaac gtatgctggc aggtattcgc atacatctgg ggcgcgaaac
     8161 ggactggtcg ttgctggcat taggcgttgc tggctggatg cgttacgtca gcggcgttga
     8221 tgatgccgga aatgccattg atgttcgcga tccgcttagc gataaaattc gcgaacttgt
     8281 tgcgggcagc agcagtgaac aacgcgtaac cgccctgctt tccctgcgtg aagttttcgg
     8341 tgatgatctg ccagataacc cgcattttgt gcaggccatc gaacaagcct ggcaacaaat
     8401 cgtacaattc ggcgcacatc aggcgctatt aaacaccctc aaaatttaac gatttctgcg
     8461 gttaaagcgg atgaagctca ccttcgtccg ctctcccctt ctcttttctg ccttttttag
     8521 ccaggattaa cgctcagtta acttaccaga gtattgcgga gccgttgtga ccaggaccaa
     8581 cctcatcacc ggttttctcg gcagcgggaa aaccacgtcg attcttcatc tgttagccca
     8641 taaagatccc aacgaaaaat ggacggtact ggttaatgaa tttggggaag tcggaattga
     8701 tggtgctttg ctcgccgata gcggcgcatt gctgaaagag atccccggcg gctgcatgtg
     8761 ctgcgttaat ggtttaccca tgcaggtagg gttgaatacc ttactgcgtc agggaaaacc
     8821 agaccgcttg ttgatagagc cgaccgggct gggccatccg aaacagatcc tcgatctgtt
     8881 aaccgcacca gtctatgaac cgtggataga tctgcgcgcc accttgtgca ttctcgatcc
     8941 acgcttgctg ctggacgaaa aaagcgccag caatgaaaac ttccgtgacc agctggctgc
     9001 cgcagacatc attgtcgcca ataaatccga ccgtgcgacg cccgaaagtg agcaagcgct
     9061 acagcgttgg tggcagcaaa atggtggcga tcgacaatta attcacagtg agcatgggaa
     9121 agttgacggt catcttctgg atttgccgcg tcgcaattta gccgagttgc ccgccagcgc
     9181 cgcgcattct catcagcatg tcgtgaaaaa agggttagca gcgttaagcc tgccagagca
     9241 tcaacgctgg cgtcgcagtc tgaacagcgg gcaaggatat caggcctgcg gctggatatt
     9301 cgacgctgat acggtattcg acaccattgg cattctggaa tgggcgcgac ttgcaccggt
     9361 ggaacgcgtc aaaggcgtgc tgcgtattcc cgaagggctg gtacgaatca accgtcaggg
     9421 cgatgacctg cacattgaaa cgcaaaacgt tgcgccaccg gacagccgta ttgagctgat
     9481 ttccagcagc gaagctgact ggaatgcctt gcagagcgcg ctgttgaagc ttcgtttagc
     9541 gactaccgcg taaggttgcc tgcgtttttc agtaagataa ttagagaaaa tatgattaaa
     9601 aatttgccgc aaatagtgtt gttgaatatt gtcggcctcg cgctgtttct ttcctggtat
     9661 attcccgtta atcatggatt atggttgccg attgatgcgg atatttttta tttctttaat
     9721 cagaaactgg tcgaaagtaa ggccttttta tggctggttg cattgaccaa caatcgcgct
     9781 ttcgacggtt gttctctgct ggcgatggga atgttgatgc tgagtttctg gctgaaagaa
     9841 aacgccccag gcagacgacg tatcgtgatt attggtctgg taatgctatt aactgcagtg
     9901 gtattaaacc agctgggtca ggcattaatt cctgtaaaac gggccagccc aacattgacg
     9961 tttactaata ttaaccgcgt cagcgaactg ctctctgtcc ccacgaaaga tgcctcacga
    10021 gatagctttc ccggcgatca cggcatgatg ctgcttattt tttcggcatt catgtggcgt
    10081 tatttcggta aagttgcagg tcttatcgcc cttattattt ttgtggtttt tgcgtttccc
    10141 agagtaatga ttggcgcaca ctggtttact gacatcattg tcggttcgat gaccgtgata
    10201 ttgatcggtt tgccctgggt gttgctgacg ccattaagtg atcgattaat cacctttttt
    10261 gacaaatcac taccgggaaa aaacaaacat ttccaaaaca aataactcac agtaattaac
    10321 atcatcaggt ttatttttat agtgaggata atcctgatga tgcgcaccgt gctttcatct
    10381 atcgaacgca aaaatcattc tctaagtaaa tgaatggatt gcatgcgttt cactcaatcg
    10441 tactttaatt gaccaatccc gcttattaac tttctgtatc actttttctt ataaaaaatc
    10501 atgtaaaacc gctcgccaag accgcaccaa tcgggtaatc tcgaactcgt tttgcctcgg
    10561 cggtagatta tcctcacagc atataatttt gtgcgttagt ccacagattt ggccttaagg
    10621 aattgtttca acatgcccag gtaattagtc tcgtgtcgct tggcattttt ttataacgat
    10681 atttgtcgtt aaggacttca agggaaaaca aacaacatgg tcaaatctca accgattttg
    10741 agatatatct tgcgcgggat tcccgcgatt gcagtagcgg ttctgctttc tgcatgtagt
    10801 gcaaataaca ccgcaaagaa tatgcatcct gagacacgtg cagtgggtag tgaaacatca
    10861 tcactgcaag cttctcagga tgaatttgaa aacctggttc gtaatgtcga cgtaaaatcg
    10921 cgaattatgg atcagtatgc tgactggaaa ggcgtacgtt atcgtctggg cggcagcact
    10981 aaaaaaggta tcgattgttc tggtttcgta cagcgtacat tccgtgagca atttggctta
    11041 gaacttccgc gttcgactta cgaacagcag gaaatgggta aatctgtttc ccgcagtaat
    11101 ttgcgtacgg gtgatttagt tctgttccgt gccggttcaa cgggacgcca tgtcggtatt
    11161 tatatcggca acaatcagtt tgtccatgct tccaccagca gtggtgttat tatttccagc
    11221 atgaatgaac cgtactggaa gaagcgttac aacgaagcac gccgagttct cagccgcagc
    11281 taataaaccg tttggatgca atcccttggc tatcctgacg agttaactga aagcactgct
    11341 taggtagtgc ttttttgttt tcattcatca gagaaaatga tgtttccgcg tcttgatcca
    11401 ggctatagtc cggtcattgt tatcttttaa atgttgtcgt aatttcagga aattaacgga
    11461 atcatgttca tacgcgctcc caattctgga cgtaagctcc tgcttacctg cattgtagca
    11521 ggcgtgatga ttgcgatact ggttagctgc cttcagtttt tagtggcctg gcataagcac
    11581 gaagtcaaat acgacacact gattatcgac gtacaaaagt atctcgatac ctattttgcc
    11641 gacctgaaat ccactactga ccggcttcag ccgctgacct tagatacctg ccagcaggct
    11701 aaccccgaac tgaccgctcg cgcggcgttt agcatgaatg tccgtacgtt tgtgctggtg
    11761 aaagataaaa aaacattctg ttcatctgcg actggtgaga tggacattcc actcaatgaa
    11821 ttgattccgg cgctcgacat taataaaaac gtcgatatgg cgatcttacc cggcacgccg
    11881 atggtgccga acaaacccgc aatcgtcatc tggtatcgca accctttgct gaaaaatagc
    11941 ggtgtgtttg ccgctctgaa tctcaacctg acgccttctc tcttttatag ttcacggcag
    12001 gaagattacg atggcgtcgc cctcattatt ggcaatactg cgctatctac cttttcttca
    12061 cgtttgatga acgttaatga attaaccgac atgcctgtcc gtgaaactaa aattgcgggc
    12121 attcctctga ccgttcggct ttatgcggat gactggacat ggaacgatgt gtggtacgca
    12181 tttttactgg gcggcatgag tggaactgtc gttggcctgc tctgctatta cctgatgagc
    12241 gtacgtatgc gccccggcag agaaatcatg accgccatca agcgcgaaca attttacgtg
    12301 gcgtatcaac cggtggtgga tacacaagct ttgcgagtaa cgggcctgga agtactgcta
    12361 cgctggcggc atcctgtcgc gggagaaatt cccccggatg ccttcattaa ctttgccgaa
    12421 tcgcaaaaga tgattgtgcc gctgactcag cacctgtttg agttaattgc ccgcgatgcc
    12481 gcagaattag aaaaagtgct gccagtaggc gtcaaatttg gtattaacat tgcgccggac
    12541 catctgcaca gcgaaagctt taaagcagat atccagaaac tgctcacttc cctgcccgca
    12601 caccatttcc agattgtgct ggaaattacc gagcgcgata tgctgaaaga gcaagaagcc
    12661 acacaactct tcgcctggct gcactcggtc ggcgtagaaa ttgctattga tgacttcggc
    12721 accgggcaca gcgcgcttat ctatcttgag cgttttacgc tcgattatct gaaaattgac
    12781 cgtggattta tcaacgccat cggtacggaa acgatcactt cacccgtact tgacgcggtg
    12841 ctgacgctgg cgaaacgcct caatatgctg acggttgctg aagggggcga aacgccggaa
    12901 caggcgcgat ggctaagcga acccggcgtt aatttcatgc aaggctactg gattagtcgc
    12961 ccgttaccgc tggacgattt tgttcgctgg ctgaagaaac cgtatacgcc gcagtggtaa
    13021 ggtgtgctta cgtcccttat tattcatagt gaaagcatgc cggattgcgg ctaatgatga
    13081 gtaaaaggaa atccgttgca gatgattgtg cgcatactgc tgctgtttat cgccctgttc
    13141 accttcggtg cgcaggcgca ggctatcaag gaaagctatg cctttgccgt gctgggcgaa
    13201 ccccggtacg catttaattt caaccatttt gattatgtga accccgccgc gccaaaaggt
    13261 gggcagataa cgttgtcagc cctcggtacc ttcgataatt tcaaccgcta tgcactgcgc
    13321 ggcaacccgg gcgcacgcac cgagcagttg tacgacacgc tatttacgac ttccgatgac
    13381 gaaccaggca gttattaccc gctgattgct gaaagtgcac gctatgctga cgattattcc
    13441 tgggtggagg tcgctattaa tccgcgcgcc cgttttcatg atggttcgcc cattactgcc
    13501 cgcgatgtag agtttacttt tcaaaaattt atgaccgaag gcgtgccgca atttcgtctg
    13561 gtctacaaag gcaccaccgt caaagccatt gcaccgttaa ccgtgcgcat tgagttagct
    13621 aaacccggca aagaagatat gctgagtctg ttttcgctgc cggtatttcc agaaaagtac
    13681 tggaaggatc acaaacttag cgacccgctc gccacgcctc cgcttgccag tggtccgtac
    13741 cgcgttacgt cctggaaaat ggggcaaaat attgtctatt cccgtgtgaa agattactgg
    13801 gcagcaaact taccggtaaa ccgtggacgc tggaatttcg acaccattcg ctacgattat
    13861 tacctcgatg ataatgtcgc ctttgaagcg tttaaagcag gtgcctttga tttgcgtatg
    13921 gaaaacgacg ctaaaaactg ggccacgcgt tataccggta aaaatttcga taaaaaatac
    13981 atcatcaaag atgagcaaaa gaacgaatca gcccaggata cgcgctggct ggcgtttaat
    14041 atccaacgtc cggtattcag cgatcgccgg gtccgggaag caatcactct cgcctttgac
    14101 tttgaatgga tgaacaaggc gttgttttac aacgcctgga gtcgcacgaa cagttatttt
    14161 cagaataccg aatacgcggc cagaaattac cccgacgccg cggagctggt gcttctggca
    14221 ccaatgaaaa aagatctacc gccagaagtc ttcacacaaa tctaccagcc gccggtatct
    14281 aaaggcgatg gctacgatcg tgacaacctg ttaaaagccg acacacttct caacgaagcg
    14341 ggctgggtgc tgaagggtca gcaacgcgtt aatgccacaa cgggtcagca actcagcttt
    14401 gaattattgc ttcccgcaag cagcaatagt cagtgggtat tgccgttcca gcacagcctg
    14461 caacggctgg gtatcaacat ggacattcgc aaggtggata actcgcaaat caccaaccgc
    14521 atgcgcagtc gcgactatga catgatgccg cgcctatggc gggcgatgcc gtggcccagt
    14581 tccgatttac agatttcctg gtcatcggaa tatatcaatt ccacttataa tgcccccggc
    14641 gtgcaaagcc cggttatcga ctcactgatc aaccaaatta ttgccgcgca gggaaataaa
    14701 gaaaaattat tgccgttggg gcgagcactg gatcgcgtat taacgtggaa ttattacatg
    14761 ctgccaatgt ggtacatggc ggaagaccgt ctcgcctggt gggataaatt ctcccacccc
    14821 gctgtacgcc ctgtttacag cctgggtatc gatacctggt ggtatgacgt taataaagcg
    14881 gccaaactgc cgtcagccag gcaacaggga gagtagatgg gcgcttacct gattcgccgt
    14941 ctgttgctgg tgatcccaac attatgggcg attatcacca tcaacttttt catcgtgcaa
    15001 attgcgcctg gcggtccggt cgaccaggcc atcgccgcca ttgagtttgg taatgccgga
    15061 gtattacccg gcgcaggcgg tgaaggtgtt cgtgccagcc atgcgcaaac gggtgtcggc
    15121 aatatcagcg acagtaatta ccgtggcgga cgcggattag atccagaagt gatcgctgag
    15181 atcactcatc gctacggttt tgataagccg atccacgaac gttacttcaa aatgctctgg
    15241 gactacatcc gctttgattt tggtgatagc ctgtttcgca gcgcctcggt gctgacgctg
    15301 attaaagaca gtctgccggt ttccatcacc ctcggattgt ggagcacgct gattatctat
    15361 ctggtgtcga ttccgttagg cattcgcaaa gctgttcata atgggagccg ctttgacgtc
    15421 tggagtagcg catttatcat tatcggctac gccattccgg cctttttgtt tgccatcctg
    15481 ctgattgtct tcttcgcggg cggcagctat ttcgacctgt tccctctacg cggcctggtt
    15541 tccgctaact ttgattcgct gccgtggtat cagaaaatca ccgattatct gtggcatatc
    15601 acgctgccgg tgctggcgac ggtgattggt ggctttgcgg cgctgaccat actgacaaaa
    15661 aactcattcc ttgatgaagt gcgcaagcaa tacgtggtga ccgcgcgtgc gaaaggggta
    15721 agtgaaaaaa atattctctg gaaacatgtg ttccgcaacg ccatgctgct ggtgattgcc
    15781 ggttttccgg cgacgtttat cagcatgttt tttaccggct cgctgctgat tgaggtgatg
    15841 ttttcactca atggtctggg cttactgggc tacgaagcga ccgtctcgcg cgattatcct
    15901 gtaatgtttg gtaccttgta tattttcacc ctgattggcc tgctgctgaa tattgtcagt
    15961 gatatcagct atacgctggt tgatccgcgt attgattttg agggacgtta atgtcgcgac
    16021 tcagccccgt caatcaggcc cgttgggcgc gttttcgtca taaccgtcgc ggctactggt
    16081 cgttatggat tttcctcgtc ttgtttggtt tgagtttgtg ttcagagctt atcgccaacg
    16141 ataaaccatt gctggtacgt tatgacggca gttggtattt cccgttgttg aaaaactaca
    16201 gcgaaagcga ttttggcggc ccgctggcaa gtcaggctga ttatcaggac ccgtggctga
    16261 aacaacggct ggaaaataac ggctgggtac tgtgggcacc gattcgcttt ggtgctacca
    16321 gtatcaactt tgctaccgat aagcccttcc cttctccacc ctcccggcaa aactggctgg
    16381 gaacggatgc caacggcggc gatgtgctgg cacgcattct ctatggcacg cggatctcgg
    16441 ttctgtttgg cctgatgctg actctctgtt ccagcgtgat gggcgtgctg gcgggggcgc
    16501 tacaaggcta ttacggcggt aaagtcgatc tctggggaca acgctttatt gaagtatggt
    16561 cggggatgcc gacgctgttt ttgattattt tactttccag cgtcgtacag cctaacttct
    16621 ggtggctgct ggcaattact gtcttgtttg gctggatgag tctggtcggc gtggtgcggg
    16681 cggagttttt acgtactcgt aatttcgact acattcgtgc ggcgcaggcg cttggcgtca
    16741 gcgatcgcag tatcatcctg cgtcatatgt tgcctaatgc catggtcgcg accctcacct
    16801 ttttaccgtt tattttatgt agttcgatca ccaccctgac ctcactcgat ttcctcggct
    16861 tcggtctgcc gctcggttca ccgtcactcg gtgaactgct attacaaggg aaaaataacc
    16921 ttcaggctcc gtggcttggg atcaccgcct tcttgtcggt ggcgatatta ttgtctttgc
    16981 tgatctttat tggtgaagcc gtccgcgacg catttgatcc taataaggcg gtgtagcatg
    17041 acgcaaactc tgttagcgat tgaagatttg tcggtgggtt ttcgccatca gcaaaccgta
    17101 cgtacagtag tcaatgatgt ttcactacag attgaggctg gcgaaacgct ggcgctggtg
    17161 ggtgagtcag gttcaggcaa aagcgttacc gcgctgtcaa ttttacgcct gctcccttcc
    17221 ccgccggttg aatatctctc cggcgatatt cgttttcgtg gcgaatcgct gcttcatgcc
    17281 agcgatcaaa cgttgcgcgg tgtacgcggt aataagatcg ccatgatttt tcaagagccg
    17341 atggtgtcgt taaatccatt gcataccctg gaaaaacagc tttatgaagt gctttcactc
    17401 caccgcggga tgcgtcggga agcggctcga ggcgaaattc ttaactgcct tgatcgcgtt
    17461 ggtatccgcc aggcggcaaa acggctgaca gattatccgc atcagctctc cggcggcgaa
    17521 cgccagcggg tgatgattgc gatggcgctg ttaacgcgac cggaattatt aattgccgat
    17581 gaaccgacca ccgcactgga cgtctctgtc caggcgcaga ttttacagct gttgcgcgaa
    17641 ctgcaaggcg agctgaatat gggcatgctg tttattactc ataacctcag cattgtcaga
    17701 aaactggccc accgcgtggc ggtaatgcaa aacggtcgct gtgtcgagca aaattacgcc
    17761 gctacgctat ttgcctcacc cactcatcct tacacacaaa agctactcaa cagtgaaccg
    17821 tcaggcgatc cagtgccgtt gccagaacct gcctcaacgt tgctggatgt tgaacagctt
    17881 caggttgcct tccccattcg caaagggatt ttgaagcgca ttgtggatca taatgtggtg
    17941 gtgaaaaaca tcagttttac gctacgagcg ggtgaaacac tgggtttagt gggcgagtcc
    18001 ggttccggga aaagtacgac gggactggcg ctgctgcgac tgattaattc tcagggcagc
    18061 atcatctttg acggtcagcc actgcaaaat ttaaatcgcc gccagctgtt acctattcgt
    18121 catcgcattc aggtggtatt tcaggatcca aactcctcgc tcaacccacg actcaacgtt
    18181 ttgcagatta ttgaggaagg cttacgggtt caccagccga cgctttctgc cgcacaacgc
    18241 gaacaacaag tgatagccgt gatgcatgaa gtgggattag atcctgaaac acgccaccgt
    18301 tatccggcgg agttctctgg tggtcagcga caacgtattg caattgccag ggcattaatt
    18361 cttaagccct cgctgatcat acttgatgaa ccgacatcat cactcgacaa aacggtacag
    18421 gcgcaaatat tgacgctatt gaaatcattg caacaaaagc tgcaactggc ctatttgttt
    18481 atcagccacg atttgcacgt tgtccgcgcg ttatgtcatc aggttatcgt actgcgacaa
    18541 ggggaagtag tggaacaagg accgtgcgcg cgcgtgtttg ccgcaccgca gcaggagtat
    18601 acgcgtcagc tactggcgtt gagctgacgc ttaaaaagga ttgtagtttg aaaagggttc
    18661 ggcaattgcc acaccaaaat ttttcaatcg gcatgttgca gcaaactcgt cctggcgatt
    18721 tacaaacagg cacggctcac cttcacactc cagcaccgaa cacggaactt cgatgtcgct
    18781 taacgcctgg cttagtttgt acatcaccga ccatgcatta tcaccatccg ggctaagcaa
    18841 tttaagcgcc accaggctgt tgtcaccgca cggtccattt tgcggaatcg gttcaacctt
    18901 cgaacctgcg aaaccagcag accagcgaaa gttctgcggt agacgatgga cgattgagag
    18961 ttgtaatgaa gtcacttatt ttccccggaa gcacatttac ttcacaattt gtttacatca
    19021 attttaacac atcatcaaca atccgtcttt atacagatcg taaagattga tgcctcgcct
    19081 gcgtggcctc tatggctctg atttaagtaa tatctgcggg cgtggtcacg tttgcggggc
    19141 tatatgtacc cgtttctgcg atctaactca acctttttaa ctacaatgat gtgacttttt
    19201 acataaattg attttacata aaataaacat atatcggggg aatgatagat ttgtggttga
    19261 catgcatcaa caaaggaagc cttttagctt cctcgttgtg caatagatca ccgttttttc
    19321 ggtcgactgg cgtacagaca gaagagaatg gagctgcttg cgcagaatgc aattgaccaa
    19381 atcatcggcc atgcagagtt aaaggtcgca agagaaagca atgcgccaac aattgcccct
    19441 atgccaaaac ggaaggttcc tgccagcgaa gatgccgttc ccgccatatg gggaaactca
    19501 tcaagaatga ccgccatcgc attggatgac accatcgaca cacagcccac aaacgccgca
    19561 acgccaacca ccagaatccc agccccagca gcgcactgat gaccatccac gctgccataa
    19621 taaattgtat ccacaacccc gagcggaaca tatttaacgc gccaatgcgg cgaacgaagc
    19681 ggctgttaaa gatggtcatc acgaacagga aaacaatgtt tagtgcaaag taataaccaa
    19741 agttttccgg cgcgacgtgg ttaatttcaa tgtagacaaa cggtccggcg ctcaggaacg
    19801 agaacattcc ggcaaagctg aaaccgctgg ccagcatata actcaggaca cgcttatgac
    19861 ggaacagcgc cgcaaagtta ccaatagtag tacgaatgtg aaaaggctgg cgacgctccg
    19921 gtggtaaggt ttctttgatc agaaagaaga tcattgccga agccagaatc gccgccacgg
    19981 cgaggatcca gaagatgtaa tgccagctca gccacaccag cacccagccg ccaactatcg
    20041 gtgccatcag cggtgcaatg gtcgtcacca gcatgacaaa cgacatcatc cgcgagaact
    20101 cttctttcgg gtagatatca cgcatcaaag cgttgataac catgctggcc gcagccgcag
    20161 ccagcccgtg gaaaaaacgc atcacaatca gctgatcgat ggtttgtgcc aacgcacacg
    20221 ccaccgcggc ggcggcaaac accagcgtac cgccgagcac caccggctta cgcccgaagc
    20281 tgtctgccat cggcccgtag attaactgcc ccaacgcaaa gcccagaata taagtactga
    20341 gggtcatctg cgtactgccc gccggtacgc caaactgcgc tgaaattacc ggtagcgcgg
    20401 gcagatacat atcaatcgac agcggcatca acatggccag caggccaagg ataaaaacaa
    20461 tagcaaacga cgaatgctgt cgggtggtca caacgggctc ctgaaagtca ttgaaaagtt
    20521 agacgacgct ggcaatttct tcttcagtta acggacgata ttcaccgggg gctaaatcag
    20581 catccagcgt aataccgcca atacgttcac gatgcagctc aaccacgtgg ttacccacgg
    20641 cggcgaacat gcgtttcacc tgatgataac gcccttcgct gatggtcaga cgaacctgcg
    20701 ttggggtaat cacttccagc accgcaggct tagtgagatc tttttcgtta tgcagctgca
    20761 cgcctttagc aaattgctct gccgtatcgt cagctacagg tgattccagt gtcaccagat
    20821 aggtcttctc gcaatgatgg cgcggagaag taatgcggtg cgaccactga ccatcatcag
    20881 tcatcagcac cagaccggtg gtatcgatat ccagacgtcc tgcggcgtgc agtttccagg
    20941 ctaccggttc atccagaaaa tagagcaccg ttgggtgatc agggtcgtcc gtggagcaaa
    21001 catagccctg aggcttattg agcatgaagt aacgtggacc atgttgctgc gccagcgggt
    21061 tgccatcgta agcgacatca tgttcaggaa gcagtttgaa cgctgcatta cgaacaattt
    21121 cgccatcgac ggtgacacga ttgccgcgga tttcacgccc ggcaatagca cggctaacgc
    21181 cgagttgctg tgcgataaat ttatcaagtc gcatgtgtgt gattttgcct gtaaaaacgg
    21241 aggtcgggca ttgacccgaa aatctgaact gttgtctgcc cagtatagcg gtctaataac
    21301 atccctcaag ggaaaaagat ccatggcata ctattagcag aataatctac ctacgcgaga
    21361 ccatgatttt tacactccgc ccatatcagc aagaagccgt ggatgccacg ctcaaccatt
    21421 ttcgtcgtca taaaacccct gccgttatcg tgctgcccac cggcgcaggt aaaagcctgg
    21481 tgattgccga actggcacgg ctggcgcgtg gtcgtgttct ggtgctggca cacgtcaaag
    21541 aactggtggc gcaaaaccat gcaaagtatc aggcgctggg gctggaagcc gatatttttg
    21601 ccgctgggtt aaagcgcaaa gagagccacg gtaaagtggt atttggcagc gtgcagtcgg
    21661 tcgctcgtaa tcttgatgcc tttcagggtg aattttcgct gttgattgtc gatgaatgcc
    21721 accgtattgg tgacgatgaa gagagccagt atcagcaaat cctcactcac ctgactaaag
    21781 tgaatcccca cttacgcctg ctggggctga ctgccacgcc ttttcgattg ggcaaaggct
    21841 ggatctacca gttccattat cacggcatgg tacgcggcga tgagaaagcc cttttccgtg
    21901 actgcattta tgagctgccg ctgcgttata tgattaaaca cggctatctg acgccgccag
    21961 aacgactgga tatgccagta gtgcaatacg atttcagccg cttgcaggca cagagtaacg
    22021 ggctgttcag cgaagctgat ctcaaccgtg agctgaaaaa acagcaacgc attacgccac
    22081 atatcatcag ccagatcatg gagttcgccg aaaagcgcaa aggggtaatg attttcgccg
    22141 ccaccgttga acacgcaaaa gagattgtgg gattactgcc tgccgaagat gcagcactga
    22201 ttactggcga cacccccggc gctgagcgcg atgtgttaat tgaagatttt aaagcccagc
    22261 gttttcgcta tctggtcaac gtcgcggtac tgaccaccgg atttgacgcc ccgcacgtcg
    22321 atcttatcgc cattctgcgt cctaccgaat cagtgagtct ttaccaacaa attgtcgggc
    22381 gcggtctgcg tctcgctcct ggcaagactg attgcttaat tcttgattat gcgggtaatc
    22441 ctcacgacct ctacgcgccg gaagttggta caccgaaagg caaaagtgac aacgtcccgg
    22501 tacaggtttt ctgccctgcc tgcggttttg ccaacacctt ttgggggaaa acgaccgccg
    22561 acgggacatt gattgaacac tttggtcgtc gctgtcaggg atggtttgaa gatgacgacg
    22621 gccatcgcga acagtgtgac ttccgtttcc gttttaaaaa ttgcccgcaa tgtaacgcgg
    22681 aaaacgatat tgccgcccgc cgctgccgcg aatgtgacac ggtactggtt gatccggatg
    22741 atatgttaaa agcggcgcta cgactgaaag acgcgctggt attacgctgt agcggcatgt
    22801 ctttacagca tgggcacgac gagaaaggcg aatggttgaa aatcacctat tacgatgaag
    22861 acggcgcgga tgtgagtgag cgtttccgtc tgcaaacgcc cgcccagcga actgccttcg
    22921 agcagctttt tatccgcccg catacgcgca caccgggcat ccctctgcgc tggatcaccg
    22981 ccgccgatat cctcgcccag caagccttac tgcgacatcc ggattttgtc gtcgcccgca
    23041 tgaaaggtca gtactggcag gtgcgtgaaa aagtgttcga ttacgaaggt cgttttcgtc
    23101 gggcgcacga attacgcggt taatggtagt tttgattgat gtataaggcg attgagtata
    23161 gaatctcgcc cgcttttgca tacgcaaagc agatcactta cctgttgctg ggtcgcctgt
    23221 agcaggatta atttaagaga gaaagaaatg tttactatca acgcagaagt acgtaaagag
    23281 cagggtaagg gtgcgagccg ccgcctgcgt gccgctaaca agttcccggc aatcatctac
    23341 ggtggcaaag aagcaccgct ggctatcgag ctggatcacg acaaagtcat gaacatgcaa
    23401 gctaaagctg aattctacag cgaagttctg gccatcgttg ttgacggtaa agaaatcaaa
    23461 gttaaagctc aggacgtaca gcgtcacccg tacaaaccga agctgcagca catcgacttc
    23521 gttcgcgctt aattgctgaa taagttgtaa aaaaccccgc tccggcgggg ttttttgtat
    23581 ctgcagatta tgcctgatta cggtattgct attttttgca ggccagataa ggcgttcacg
    23641 ccgcatctgg cattcagaat acaaaaccga ttaattgccg ccagacgtcc ggcgctgcaa
    23701 ttggtcgcgc aaattcggcg gcgtgccttt aatggtcaag gtatcggttg ctggatccca
    23761 gaagatgcgt tcacctaaca gcatcgcatc aaagttaata gtcaagccac cgccgctacc
    23821 ggcaaacttc gtcaactgac gcagtgtgct acggtctgcc gggaagctct cttccagttc
    23881 gtagcctttt tcagccgcaa acttcgtgaa gctcacttcg cttacgcctg ccagctcttt
    23941 cgacagcgat tccagttcga tctcttcgcc tgcctgcagc tgctcattac agtagctata
    24001 aacctgctgg cgcacgttct gtcgctctgc tttatccagt tgtgcttcgg cagtgaaatc
    24061 atcaaccgct tgcaacagcc cacggttttg cgctttcgcg ttcaatcctt cgctggcccc
    24121 gaggaaatcc ataaagaaat ccgccacttt gcgccctact cgccctttca ggaaagtgag
    24181 atagcgggtg gactctggat tggtttccca ttcggttaaa tcgatacgcg caacaatatc
    24241 cgcatgattg atatcaagat aatgggttgg gttgatgtcg agattttcgt taacgcgcat
    24301 actgctcagg ttgctcagaa ctgccaccag cagatactcc accgccagat aacggtagtg
    24361 gcaaaacagc acgaatccac cgtcagcaaa aggatatttc gctaattcgt cacgcaggcg
    24421 cccggttgcc gcgcggctaa atgccagaaa gtcctcttcg ccctgacgct gtaagcgcag
    24481 cgtctgcgcc agttcactct cttcgctaaa caagccgtaa gctttatttt tggcgctata
    24541 gacccgatgc agttctgcca ccatctcaac gacggtttct gtcggttcca gcaatgaatc
    24601 gcgcaacacc agctcaaggt tctgctcatc acgcttgata agctggtgca gagcaatctg
    24661 gttgatatcc agactcatga taaactctcc tttaagaccg ggcggtattc aaccaccgcc
    24721 ggttaagcga cgcaataaaa gatggcggtc attttacaga aggcagcgta acgagaatga
    24781 tttaacgcat aaaaaagcag aaaaaaaacc gttgctacgg taatatgttg ccctttcatc
    24841 aactaactga tttcgattta tgccacaaat ttcccgctac agtgatgaac aggttgaaca
    24901 attgctcgca gagctgctca acgtactgga aaaacataag gctccgaccg acctttccct
    24961 gatggtgtta ggcaacatgg tcactaacct tatcaacacc agcattgccc cggcccaacg
    25021 ccaggcaatt gccaactctt ttgcccgcgc cttacagtcc tctatcaacg aagacaaagc
    25081 gcactaaggg aaacagataa caggttatgg taactcatcg tcagcgctac cgtgaaaaag
    25141 tctcccagat ggtcagttgg gggcactggt ttgcactgtt caatattctg ctttcgctcg
    25201 tcattggcag ccgttacctg tttatcgccg actggccgac aacgcttgct ggtcgcattt
    25261 attcctacgt aagcattatc ggccatttca gcttcctggt gttcgccacc tacttgctga
    25321 tcctcttccc gctgaccttt atcgtcggct cccagaggct gatgaggttt ttgtccgtca
    25381 ttctggcaac ggcgggaatg acgctattac tgatcgatag cgaagtcttt actcgtttcc
    25441 atctccatct taatcccatc gtctggcagt tggttatcaa cccagacgaa aatgagatgg
    25501 cgcgcgactg gcagctgatg ttcatcagcg tgccggttat tttattgctt gaactggtgt
    25561 ttgcgacgtg gagctggcaa aagctgcgca gcctgacgcg tcgtcgacgc ttcgcgcgcc
    25621 cgctggccgc attcttattt atcgccttta tcgcctcgca tgtggtgtat atctgggccg
    25681 atgccaactt ctatcgcccg atcaccatgc agcgcgctaa cctgccgctt tcgtacccga
    25741 tgacggcgcg acgtttcctt gagaagcatg gcctgcttga tgcgcaggag tatcaacgcc
    25801 gtcttattga gcaaggtaat ccagacgccg tttccgtaca gtatccgtta agcgaactgc
    25861 gctatcgcga tatgggcacc gggcagaatg tgctgttgat tactgtcgat ggcctgaact
    25921 actcacgctt cgagaagcag atgcctgcgc tggcaggttt tgctgagcaa aatatttcgt
    25981 tcacgcgcca tatgagctcc ggcaacacta cagacaacgg catctttggc ctgttctatg
    26041 gcatctcgcc gagctatatg gacggcattc tgtcgacccg tacccctgcg gcgttaatta
    26101 ctgcgcttaa tcagcaaggc tatcagctgg gattattctc gtcagatggc tttaccagtc
    26161 cgctgtatcg ccaggcattg ttgtcagatt tctcgatgcc gagcgtacgc ccccaatccg
    26221 acgagcagac cgccacgcag tggatcaact ggctgggccg ctacgcacaa gaagataacc
    26281 gctggttctc gtgggtctct ttcaatggca ctaacattga cgacagcaat cagcaggcat
    26341 ttgcacggaa atatagccgg gcggcaggca atgtcgatga ccagatcaac cgcgtgctca
    26401 atgcactgct tgattctggc aaactggaca atacggttgt gattatcact gccggtcggg
    26461 gtattccgct gagcgaagac gaagaaacct ttgactggtc ccacggtcat ctgcaggtgc
    26521 cattagtgat tcactggcca ggcacgccgg cgcagcgtat taatgcgctg actgatcata
    26581 ccgatctgat gacgacgctg atgcaacgcc tgctacatgt cagcacacct gccagcgaat
    26641 attcgcaagg tcaggatttg ttcaaccctc aacgccgtca ttactgggtc actgcagcgg
    26701 ataacgatac gctggcaatt accaccccga aaaagacgct ggtgctgaac aataacggta
    26761 aataccgcac ttacaactta cgtggtgaaa gagtgaaaga tgaaaaacca cagttaagtt
    26821 tgttattgca agtgctgaca gacgagaagc gttttatcgc taactgatta attataaatc
    26881 agttagcgaa atatcttact tgcaatcggt gtggaaaacg gtagtattag cagccacgag
    26941 tcggcacgta gcgcagcctg gtagcgcacc gtcatggggt gtcgggggtc ggaggttcaa
    27001 atcctctcgt gccgaccaaa tcgcccaccg gataccaccg gaattaacag tttttagaca
    27061 cgaaaagccc gctaatcctt gattagcggg tttttttatg gtttttagtc accggacatc
    27121 accggattta taagctatca gccggatttt ttagttatac gcttagttat acgggcttgc
    27181 gtataactaa agccgtataa ctaaaaccct gttttttcgt gtggaatcat atacatatgg
    27241 cgagaaaaac acccccatta accacggtgc agatcaaagc agccagacca gcggaaaagg
    27301 aatacaccct acaggacggc ggagggcttt ttctcctggt caaaccgtcc ggatcaaaac
    27361 tctggcgatt ttcctactac cggccatcgg acaaaaaaag aatattgctg agttttggat
    27421 cgcttgatga tgtttccctg gctgatgcca gaaaacgccg tagcgagtac agagcgttaa
    27481 tcagtgccgg aactgacccg cagggccatg agaagaaaaa acgagaggca gaggcccgaa
    27541 gacaagggaa cacgttcgaa aatgtggcgg cggcatggta ccaggtgaaa atcagccaga
    27601 atctggcccc caacacgatt aaagacatct ggcgttcgct ggataaatat gtattcccgt
    27661 tcatcggcaa cacgccaata gataccctca ccgcccgaag gttcgttgaa gtgcttacac
    27721 ccatcaagga gcgcggcaac ctggaaacac tcaagcgggt tttacagcgc gttaatgagg
    27781 taatggatta cgccgccaac agtgggctga ttgatgccaa tccggctatg aatgtgcgta
    27841 aggcgtttcc ctcacctgta aaaaaacata tgccaacaat ccgccccgaa cagctgccgg
    27901 agcttatgca ggctttatca gtatcggcaa cagaacggca gaccagatta ctgattgaat
    27961 ggcagttact gaccgtaacc cgtcccgccg aagcgtcatc aacgcggtgg gatgaaatca
    28021 acctggacgc gaagcaatgg acgatacctg ccggacgcat gaagatgcgc agggatcacg
    28081 ttatcccgct ttccggtcag gctatggcgg tgctggaggc catgaaacca atcagccacc
    28141 accgcaatta cgttttccca agtctgaaag acccacagca gccgatgaac agccagacag
    28201 ctaacgcagc attgcggcgt atgggattcg ctggcgtgct ggtgtctcat ggattacgcg
    28261 ccatattcag cacagcagcg aacgaggaag gattcgagcc ggacgtaata gaggcggcac
    28321 ttgcccacgt cgacaccaac gaagttagac gggcatacaa ccggagcaac tacatagaaa
    28381 aacgcatcgt gctgatgcgc tggtggggcg aatttgtcga ggctgcggcg acgggcgtaa
    28441 ccctcgccag tggtaaaagg ggtatccgag ccgtgtagct gtacagaaaa ccagtaaaaa
    28501 ctacgaaaac catgtaaaac cgtcgtataa ttgcatcaaa tttaacgaca aggccgtgaa
    28561 acatgaaacc gttaagatgc aaaaaaatat cagatgcaat tgcgacgggc tgcaactggc
    28621 cctgatggtt cagcatgaat tttggtcaac ctacgatccg gaggacagaa cgacggcccc
    28681 atcaaaaaaa caggtagtag attttctggt atcccgtggc gcttccagaa atctggcggt
    28741 aagtattgat aaggtcgtac gtccggcatc tatgaagatc ggaggcaggc ccaaaaaatg
    28801 gcggtaacaa tcctggaagc ggcagaaatg ccgctttttt tataattcca tttcaaatca
    28861 tcaatataaa a
//
LOCUS       DAJVSY010000035        28410 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.035, whole genome shotgun sequence.
ACCESSION   DAJVSY010000035 DAJVSY010000000
VERSION     DAJVSY010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 28410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28410
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.035"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            79..1331
                     /locus_tag="OQQ19_001410"
                     /pseudo
     CDS             79..1331
                     /locus_tag="OQQ19_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416113.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            1728..2042
                     /locus_tag="OQQ19_001411"
     CDS             1728..2042
                     /locus_tag="OQQ19_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416114.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid shock protein"
                     /protein_id="HCS1803086.1"
                     /translation="MKKQIEGMTMKKVLALVVAAAMGLSSAAFAAETATTTKAAPAKT
                     THHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAGKHSHQQPAKPAAQP
                     AA"
     gene            2135..2218
                     /locus_tag="OQQ19_001412"
     CDS             2135..2218
                     /locus_tag="OQQ19_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803087.1"
                     /translation="MVGRYRFEFILIILILCALIAARFYLS"
     gene            2318..3139
                     /locus_tag="OQQ19_001413"
     CDS             2318..3139
                     /locus_tag="OQQ19_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HCS1803088.1"
                     /translation="MRTTIAVVLGAISLTSAFVFADKPDVAKSANDEVSTLFFGHDDR
                     VPVNDTAQSPWDAVGQLETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVVLRF
                     VSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITP
                     LPLFEGDKAALTAALKSAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDT
                     LPGDSGSPLMLHTNDGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK"
     gene            complement(3178..3507)
                     /gene="mdtI"
                     /locus_tag="OQQ19_001414"
     CDS             complement(3178..3507)
                     /gene="mdtI"
                     /locus_tag="OQQ19_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug/spermidine efflux SMR transporter
                     subunit MdtI"
                     /protein_id="HCS1803089.1"
                     /translation="MAQFEWVHAAWLALAIVLEIVANVFLKFSDGFRRKIFGLLSLAA
                     VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAG
                     MIMVKLA"
     gene            complement(3494..3859)
                     /gene="mdtJ"
                     /locus_tag="OQQ19_001415"
     CDS             complement(3494..3859)
                     /gene="mdtJ"
                     /locus_tag="OQQ19_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug/spermidine efflux SMR transporter
                     subunit MdtJ"
                     /protein_id="HCS1803090.1"
                     /translation="MYIYWILLGLAIATEITGTLSMKWASVSEGNGGFILMLVMISLS
                     YIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI
                     KSGTRKARKPELEVNHGAV"
     gene            4271..5305
                     /gene="tqsA"
                     /locus_tag="OQQ19_001416"
     CDS             4271..5305
                     /gene="tqsA"
                     /locus_tag="OQQ19_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2 transporter TqsA"
                     /protein_id="HCS1803091.1"
                     /translation="MAKPIITLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIA
                     VILNPLVQHMVRWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIM
                     TPLQALEPLLQRVGIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMLSIFLLLLTVLF
                     MLLEVPQLPGKFQQMMARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAAL
                     DVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFG
                     NILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTAGGQSI
                     AVLLSDLNKE"
     gene            complement(5330..6718)
                     /gene="pntB"
                     /locus_tag="OQQ19_001417"
     CDS             complement(5330..6718)
                     /gene="pntB"
                     /locus_tag="OQQ19_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000014033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HCS1803092.1"
                     /translation="MSGGLVTAAYIVAAILFIFSLAGLSKHETSRQGNNFGIAGMAIA
                     LIATIFGPDTGNVGWILLAMVIGGAIGIRLAKKVEMTEMPELVAILHSFVGLAAVLVG
                     FNSYLHHDAGMAPILVNIHLTEVFLGIFIGAVTFTGSVVAFGKLCGKISSKPLMLPNR
                     HKMNLAALVVSFLLLIVFVRTDSVGLQVLALLIMTAIALVFGWHLVASIGGADMPVVV
                     SMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFG
                     TDGSSTGDDQEVGEHREITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLR
                     ARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGAND
                     TVNPAAQDDPKSPIAGMPVLEVWKAQDVIVFKRSMNTGYAGVQNPLFFKENTHMLFGD
                     AKASVDAILKAL"
     gene            complement(6729..8261)
                     /gene="pntA"
                     /locus_tag="OQQ19_001418"
     CDS             complement(6729..8261)
                     /gene="pntA"
                     /locus_tag="OQQ19_001418"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HCS1803093.1"
                     /translation="MRIGIPRERLTNETRVAATPKTVEQLLKLGFTVAVESGAGQLAS
                     FDDKAFVQAGAEIVEGNSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELM
                     QKLAERNVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAA
                     GKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE
                     EAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMK
                     TGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRLPTQSSQLYGTNLVNL
                     LKLLCKEKDGNITVDFDDVVIRRVTVIRAGEITWPAPPIQVSAQPQAAQKAAPEVKTE
                     EKCACSPWRKYALMALAIILFGWLASVAPKEFLGHFTVFALACVVGYYVVWNVSHALH
                     TPLMSVTNAISGIIVVGALLQIGQGGWVSFLSFIAVLIASINIFGGFTVTQRMLKMFR
                     KN"
     gene            8785..9729
                     /locus_tag="OQQ19_001419"
     CDS             8785..9729
                     /locus_tag="OQQ19_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS1803094.1"
                     /translation="MKLKNTLLASALLSATAFSVNAATELTPEQAAAVKPFDRVVVTG
                     RFNAIGEAVKAVSRRADKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNR
                     VINGVVELPKDQAVLIEPFDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDA
                     NQGGNQRITAFIYKKDAKKRIVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTA
                     SPSSEVGRFFETQSSKGGRYTVTLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTE
                     VSYQVAKRAAKKGAKYYHITRQWQERGNNLTVSADLYK"
     gene            9915..11297
                     /locus_tag="OQQ19_001420"
     CDS             9915..11297
                     /locus_tag="OQQ19_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1803095.1"
                     /translation="MEKKLGLSALTALVLSSMLGAGVFSLPQNMAAVASPAALLIGWG
                     ITGAGILLLAFAMLILTRIRPELDGGIFTYAREGFGELIGFCSAWGYWLCAVIANVSY
                     LVIVFSALSFFTDTPELRLFGDGNTWQSIVGASALLWIVHFLILRGVQTAASINLVAT
                     LAKLLPLGLFVVLAMMMFKLDTFKLDFTGLVLGVPVWEQVKNTMLITLWVFIGVEGAV
                     VVSARARNKRDVGKATLLAVLSALGVYLLVTLLSLGVVARPELAEIRNPSMAGLMVEM
                     MGPWGEIIIAASLIVSVCGAYLSWTIMAAEVPFLAATHKAFPRIFARQNAQAAPSASL
                     WLTNICVQICLVLIWLTGSDYNTLLTIASEMILVPYFLVGAFLLKIATRPLHKAVGVG
                     ACIYGLWLLYASGPMHLLLSVVLYAPGLLVFLYARKTHTHDNVLNRQEMVLIGMLLIA
                     SVPATWMLVG"
     gene            11334..12056
                     /gene="folM"
                     /locus_tag="OQQ19_001421"
     CDS             11334..12056
                     /gene="folM"
                     /locus_tag="OQQ19_001421"
                     /EC_number="1.5.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydromonapterin reductase"
                     /protein_id="HCS1803096.1"
                     /translation="MGKAQPLPILITGGGRRIGLALAWHFINQKQPVIVSYRTHYPAI
                     DGLIKAGAQCIQADFSTNDGVMAFADEVLKSTHGLRAILHNASAWMAEKLGAPLADVL
                     ACMMQIHVNTPYLLNHALERLLRGHGHAASDIIHFTDYVVERGSDKHIAYAASKAALD
                     NMTRSFARKLAPEVKVNSIAPSLILFNEHDDAEYRQQALNKSLMKTAPGEKEVIDLVD
                     YLLTSCFVTGRSFPLDGGRHLR"
     gene            complement(12053..12376)
                     /locus_tag="OQQ19_001422"
     CDS             complement(12053..12376)
                     /locus_tag="OQQ19_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlpM family protein"
                     /protein_id="HCS1803097.1"
                     /translation="MKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVAS
                     ERGIEALRATIIFSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIIC
                     WIKLH"
     gene            12502..13221
                     /gene="rstA"
                     /locus_tag="OQQ19_001423"
     CDS             12502..13221
                     /gene="rstA"
                     /locus_tag="OQQ19_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416125.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator RstA"
                     /protein_id="HCS1803098.1"
                     /translation="MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRE
                     NPDLVLLDIMLPGKDGITICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKT
                     MPPAVLLARLRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEI
                     SLSTADFELLWELATHAGQIMDRDALLKNLRGVSYDGLDRNVDVAISRLRKKLLDNAA
                     EPYRIKTVRNKGYLFAPHAWE"
     gene            13225..14526
                     /gene="rstB"
                     /locus_tag="OQQ19_001424"
     CDS             13225..14526
                     /gene="rstB"
                     /locus_tag="OQQ19_001424"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     RstB"
                     /protein_id="HCS1803099.1"
                     /translation="MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMN
                     SSLYLMRSELREIPPHDWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEIVA
                     LDDQYTFLQRIPRSHYVLAVGPVPYLYYLHQMRLLDIALIAFIAISLAFPVFIWMRPH
                     WQDMLKLEAAAQRFGDGHLYERIHFDEGSSFERLGIAFNQMADNINALIASKKQLIDG
                     IAHELRTPLVRLRYRLEMSDNLSAAESQALNRDISQLEALIEELLTYARLDRPQNELH
                     LSEPDLPLWLSTHLADIQAVTPDKTVRIKTLVQGHYAALDMRLMERVLDNLLNNALRY
                     CHSTVETSLLLSGNRATLIVEDDGPGIAPENREHIFEPFVRLDPSRDRSTGGCGLGLA
                     IVHSIALAMGGTVNCDTSELGGARFSFSWPLWHNIPQFTSA"
     gene            14602..15531
                     /gene="tus"
                     /locus_tag="OQQ19_001425"
     CDS             14602..15531
                     /gene="tus"
                     /locus_tag="OQQ19_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication terminus site-binding protein"
                     /protein_id="HCS1803100.1"
                     /translation="MARYDLVDRLNTTFRQMEQELAAFAAHLEQHKLLVARVFSLPEV
                     KKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQV
                     DNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRSLT
                     VLHDPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQD
                     IAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGE
                     LLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD"
     gene            complement(15528..16931)
                     /gene="fumC"
                     /locus_tag="OQQ19_001426"
     CDS             complement(15528..16931)
                     /gene="fumC"
                     /locus_tag="OQQ19_001426"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HCS1803101.1"
                     /translation="MNTVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSL
                     IHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQS
                     NMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQL
                     IPQLKTLTQTLSEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYS
                     LPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQ
                     AHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALT
                     MLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIE
                     PNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEF
                     DSWVRPEQMVGSMKAGR"
     gene            complement(17074..18720)
                     /gene="fumB"
                     /locus_tag="OQQ19_001427"
     CDS             complement(17074..18720)
                     /gene="fumB"
                     /locus_tag="OQQ19_001427"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000066594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I fumarate hydratase"
                     /protein_id="HCS1803102.1"
                     /translation="MSNKPFHYQAPFPLKKDDTEYYLLTSEHVSVSEFEGQEILKVAP
                     EALTLLARQAFHDASFMLRPAHQQQVADILRDPEASENDKYVALQFLRNSDIAAKGVL
                     PTCQDTGTAIIVGKKGQRVWTGGCDEAALARGVYNTYIEDNLRYSQNAPLDMYKEVNT
                     GTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALLTPGKLKNYLVEKMRT
                     LGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNEHGQAFRDVELEKEL
                     LIEAQNLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINRQGIW
                     IEKLEHNPGKYIPEELRKAGEGEAVRVDLNRPMKEILAQLSQYPVSTRLSLNGTIIVG
                     RDIAHAKLKERMDNGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGPTTAGRMDSYVDQ
                     LQAQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKSLECVEYPEL
                     GMEAIWKIEVEDFPAFILVDDKGNDFFQQIQLTQCTRCVK"
     gene            18919..20094
                     /gene="manA"
                     /locus_tag="OQQ19_001428"
     CDS             18919..20094
                     /gene="manA"
                     /locus_tag="OQQ19_001428"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416130.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase"
                     /protein_id="HCS1803103.1"
                     /translation="MQKLINSVQNYAWGSKTALTELYGMENPSSQPMAELWMGAHPKS
                     SSRVQNAAGDIVSLRDVIESDKSTLLGEAVAKRFGELPFLFKVLCAAQPLSIQVHPNK
                     RNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSEIVSLLQP
                     VAGAHPAIAHFLQQPNAERLSELFASLLNMQGEEKSRALAILKSALDSQQGEPWQTIR
                     LISEFYPEDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAG
                     LTPKYIDIPELVANVKFEAKPANQLLTQPVKQGAELDFPIPVDDFAFSLHDLSDKETT
                     ISQQSAAILFCVEGDATLWKGSQQLQLKPGESAFIAANESPVTVKGHGRLARVYNKL"
     gene            20195..21703
                     /locus_tag="OQQ19_001429"
     CDS             20195..21703
                     /locus_tag="OQQ19_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HCS1803104.1"
                     /translation="MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQL
                     KLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFP
                     LAQLKKLNLIPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLK
                     PLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLK
                     TDGSSTLASFGERVGNQKLSLEKMTISVEGKELALLEGMEISGKSDLVNDGKTINSQL
                     DYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQALLAQPEIANNPELY
                     QEKVTEAFFSALPLMLKGDPVITVAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLA
                     QEVDRSVKSLDAKLTIPVDMATEFMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFR
                     LTTLQDNTITTSLQYTNGQITLNGQKMSLEDFVGMFAMPALNVPAVPAIPQQ"
     gene            complement(21919..23184)
                     /gene="uidC"
                     /locus_tag="OQQ19_001430"
     CDS             complement(21919..23184)
                     /gene="uidC"
                     /locus_tag="OQQ19_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416132.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronide uptake porin UidC"
                     /protein_id="HCS1803105.1"
                     /translation="MRKIVAMAVICLTAASGLTSAYAAQLADDEAGLRIRLKNELRRA
                     DKPSAGAGRDIYAWVQRGLFDFNSGYYSNIIGVEGGAYYVYKLGARADMSTRWYLDGD
                     KSFGFALGAVKIKPCENSLLKLGRFGTDYSYGSLPYRIPLMAGSSQRTLPTVSEGALG
                     YWALTPNIDLWGMWRSRVFLWTDSTTGIRDEGVYNSQTGKYDKHRARSFLAASWHDDT
                     SRYSLGASVQKDVSNQIQSILEKSIPLDPNYTLKGELLGFYAQLEGLSRNTSQPNETA
                     LVSGQLTWNAPWGSVFGSGGYLRHAMNGAVVDTDIGYPFSLSLDRNREGMQSWQLGVN
                     YRLTPQFTLTFAPIVTRGYESSKRDVRIEGTGILGGMNYRVSEGPLQGMNFFLAADKG
                     REKRDGSTLGDRLNYWDVKMSIQYDFMLK"
     gene            complement(23223..24596)
                     /gene="uidB"
                     /locus_tag="OQQ19_001431"
     CDS             complement(23223..24596)
                     /gene="uidB"
                     /locus_tag="OQQ19_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronide transporter"
                     /protein_id="HCS1803106.1"
                     /translation="MNQQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVACVGAA
                     AAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTD
                     WSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFV
                     CLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLK
                     ISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYERYVLNDTGLFTVLVLVQNLVG
                     TVASAPLVPGMVARSGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG
                     VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYI
                     ANQVQTPEVIMSIRTSIALVPCGFMLLAFVIIWFYPLTDKKFKEIVVEIDNRKKVQQQ
                     LISDITN"
     gene            complement(24593..26393)
                     /gene="uidA"
                     /locus_tag="OQQ19_001432"
                     /pseudo
     CDS             complement(24593..26393)
                     /gene="uidA"
                     /locus_tag="OQQ19_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416134.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucuronidase"
     gene            complement(26781..27371)
                     /gene="uidR"
                     /locus_tag="OQQ19_001433"
     CDS             complement(26781..27371)
                     /gene="uidR"
                     /locus_tag="OQQ19_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator UidR"
                     /protein_id="HCS1803107.1"
                     /translation="MMDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAIS
                     PGTLYHHFISKEALIQAIILQDQERALARFREPIEGIHFVDYMVESIVSLTHEAFGQR
                     ALVVEIMAEGMRNPQVAAMLKNKHMTITEFVAQRMRDAQQKGEISPDINTSMTSRLLL
                     DLTYGVLADIEAEDLAREASFAQGLRAMIGGILTAS"
     gene            complement(27600..28367)
                     /gene="hdhA"
                     /locus_tag="OQQ19_001434"
     CDS             complement(27600..28367)
                     /gene="hdhA"
                     /locus_tag="OQQ19_001434"
                     /EC_number="1.1.1.159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-alpha-hydroxysteroid dehydrogenase"
                     /protein_id="HCS1803108.1"
                     /translation="MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN
                     ADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPK
                     PFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYA
                     SSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRL
                     GQPQDIANAALFLCSPAASWVSGQILTVSGGGVQELN"
BASE COUNT         7068 a         7323 c         6815 g         7204 t
ORIGIN      
        1 atatattaga cagaacaatt cgattttcct aacctatgta taagcctgat ccacaggcat
       61 atttagcaag gatttcaagt gagccgtact acaactgttg atggcgctcc ggcaagcgac
      121 actgacaagc aaagcatttc tcagccaaat caatttatta aacgcggtac gccgcaattt
      181 atgcgcgtca ccctggcgct gttctctgcc ggactggcaa cctttgcact cctctattgt
      241 gtgcagccta tccttccggt gctttcgcag gagtttggct taacccccgc gaacagtagt
      301 atttcactgt ccatttccac ggcgatgttg gctattggtt tgctgtttac tggcccccta
      361 tccgatgcca ttggtcgcaa accagtgatg gtcacggcgc tactgttggc ctccatttgt
      421 acgttatttc gacaataatg accagctggc acggcatttt gattatgcgc gccttgattg
      481 ggctttcgtt aagtggcgtg gcagctgttg gcatgactta tcttagcgag gaaatccacc
      541 ccagtttcgt ggccttttcg atggggttgt atatcagcgg caactcaatt ggcggcatga
      601 gcggacgctt aattagtggt gtcttcacgg actttttcaa ctggcgaatt gctctggcgg
      661 caatcggttg tttcgcgcta gcctcggcgt tgatgttctg gaaaatcctt ccggaatcac
      721 gccattttcg cccgacttcg ctgcgaccta agacgttgtt tatcaacttt cgtctgcact
      781 ggcgtgaccg gggattaccg ttattgttcg cagaaggctt tttgctgatg gggtcgttcg
      841 tcacgctgtt taattacatc ggctatcggt tgatgctttc cccctggcat gtcagtcagg
      901 ccgtggttgg cttattatcg ctggcttatt tgaccggtac acggagctca cccaaagccg
      961 gaaccatgac cacccgctac gggcgcggtc cggtgatgtt gttttcgacg ggggttatgc
     1021 tgtttggttt actgatgacc ttattcagct cgctgtggct gatctttgcc ggaatgttac
     1081 tcttctcagc aggattcttc gcagcccact cagttgccag cagctggatc ggcccccgcg
     1141 caaaacgcgc taaaggccag gcctcctcgc tgtatctgtt cagttactat ctggggtcga
     1201 gtattgccgg gacgctgggt gatgttttct ggcataacta tggctggaac ggcgtcggcg
     1261 catttattgc tctgatgctg gtcattgctc tgctggtcgg gacgcgtttg catcgtcgtc
     1321 tgcacgcctg aaaaataagc ccggactgcg gtaactacac gtccggactt attgcttgct
     1381 caaaccaacg ttaatagcca tcctaaaata gacgaagcgc cagccaattc ccgcagtgcg
     1441 tctagcgtca tcaggattat aagtacccaa ataaacggat tcattttgct gtgtgtcatt
     1501 tattactgat gcgcagttat tctaccgctt tgtaagtagt aaaatagtta acccgatcaa
     1561 gactactatt attggtagct aaatttccct taagtcacaa tacgttatta tcaatgctgt
     1621 aatttattca gcgtttgtac atatcgttac acgctgaaac caaccactca cggaagtctg
     1681 ccattcccag ggatatagtt atttcaacgg ccccgcagtg gggttaaatg aaaaaacaaa
     1741 ttgagggtat gacaatgaaa aaagtattag ctctggttgt tgccgctgct atgggtctgt
     1801 cttctgccgc ctttgctgca gagactgcga cgaccaccaa agcagcgccg gcgaaaacga
     1861 cacatcataa aaaacagcat aaagcagcac ctgcccagaa agcgcaggca gctaaaaagc
     1921 atcataaaaa tacgaaagct gaacagaaag cccctgaaca aaaagcgcag gcagcgaaga
     1981 aacacgccgg gaaacacagt catcagcaac cggcaaaacc tgctgcacaa cccgcagcgt
     2041 aagttttcaa cagtaatgct ggcgcgcccc ctcgcgcctg aaaattacgg tgctaagcgg
     2101 gtaacgttta gcaccgcctt tagcggaggg tagtatggtg ggccgttatc gctttgagtt
     2161 cattcttatc atccttattt tatgcgcact gattgccgct cgtttttatc tttcctgact
     2221 gtagttatct gattttactc ccactttcat cccgtcccgt ctatagtatt tatgagggtt
     2281 tgcttttaat aatcataatt acccaccaga gtgtgatatg cgtacaacca ttgctgtagt
     2341 gttgggtgca attagtttga cgtctgcttt tgtgtttgca gataaaccag acgttgccaa
     2401 atcggcaaac gatgaggtca gcaccctgtt ttttggtcat gatgatcgtg tgccagtgaa
     2461 tgacacggcc caatcaccgt gggatgcggt tgggcaactg gaaacggcca gcggcaattt
     2521 atgtacggcg acgctgattg cacccaatct ggcattaacg gcaggacact gtttattgac
     2581 acctccaaag ggtaaagccg ataaagcagt ggtgctgcgt tttgtgtcaa ataaaggtct
     2641 ttggcgctat gagatccacg acatagaagg ccgcgttgat ccgacactgg gaaagcggtt
     2701 aaaagcagat ggggatggtt ggattgtacc tcccgcagcc gcgccgtggg acttcggatt
     2761 gattgtgcta cgtaatcccc cttctggcat tacaccgttg ccgttatttg agggagataa
     2821 agccgcgctt actgccgcat taaaatcggc tggccgtaaa gtaactcagg cgggataccc
     2881 tgaagatcat ctcgatacgt tgtacagtca tcaaaactgt gaagtgactg gctgggcgca
     2941 aacgtcggtg atgtcacatc agtgcgatac cttgccgggt gacagcggtt cgcctctgat
     3001 gttgcatacc aatgacggct ggcaattaat tggggtgcaa agttcggctc ctgccgcgaa
     3061 agatcgctgg cgcgccgata accgggccat ttctgttacc ggttttcgcg acaagctgga
     3121 tcaactgtcg caaaaataat gttcaaacgc tgcccgactg tgcgggcagc gtgttcatca
     3181 ggcaagtttc accatgatca ttccagccaa cagcaagacc aggccaatcc agcctttacg
     3241 atttaaccgt tgaccaaaca agatccaacc tgcggctaac gtggcggcaa taccaaaccc
     3301 gccccacaat gcataagcga cagacaagtc gatcccttta acggcctgag aaagcgcact
     3361 aaaggcagcc agcaccgccg ccagggagag caagccaaat attttgcgac gaaagccgtc
     3421 agaaaatttc aaaaagacgt tagcaacgat ttccagcacg attgccaatg ccagccaggc
     3481 ggcgtgaacc cattcaaact gcgccatggt ttacctccag ttcaggttta cgcgctttac
     3541 gggtacctga ttttatcaac acaatcccgg ccaccagggt ggttaacccg gcaattttca
     3601 tcagcgataa actttcgtcg aataacaaaa cgctaaacaa ggtaataaat aaaataccga
     3661 taccttccca cagcgcataa gctacgccta aggcgatctt tttaacggcg aaagagagaa
     3721 atatatacga cagagaaatc atcaccagca ttaaaataaa gccgccattt ccctcactga
     3781 cgctcgccca tttcattgat agcgtaccgg taatttctgt agcaatagcc aggcctaata
     3841 aaatccaata aatatacatt gtccttctcc tgcaagagaa ttattttaat tttcgcttaa
     3901 ttcagcgaaa ttaaagtaaa gtggtcaagc cccgcgcata gggcaagctt aggcagaaga
     3961 aaggactaaa gcgcgttgcg ccagtgctgc tcacctacga gcaagatagt ggatgaggta
     4021 caaagatggg taaatgttga aaataaggtc ctgaacaaat tgtccataat attacaatta
     4081 tccgcagtgt tgcttctcgt catcgcggat gataattgtc ctcggtagtt gaacacgcct
     4141 gatttgtatc atagcttaag aattaactca aaatattttc acttctttac ctgagcggtt
     4201 tgattttcgt tatgatgacg gagcgaaaaa gacattatta ttagcaaagg aagaaaaaac
     4261 ggggacaagc atggcaaagc cgatcatcac gctcaatggc ctaaaaatcg tcattatgtt
     4321 gggaatgctg gtcattattc tctgcggtat ccgttttgcc gccgagatca tcgtgccgtt
     4381 tattctcgca ttatttattg ctgttattct taacccgctg gtgcaacaca tggtccgctg
     4441 gcgagtgccg cgtgtactgg cggtgtcgat tttgatgacc atcatcgtga tggcgatggt
     4501 gttgctatta gcttatctgg gttccgcgct caacgagttg acgcggacgt taccgcaata
     4561 tcgcaactct attatgacgc cgctgcaagc tcttgagccg ttgttgcaac gcgtagggat
     4621 tgacgtctca gttgaccagc tggcgcatta cattgatccg aacgcagcga tgacgttgct
     4681 caccaactta ttgacgcagt tatctaatgc catgttatca atatttttat tgctgctgac
     4741 ggtgctgttt atgctgctcg aagtgccaca attgcccgga aaatttcagc aaatgatggc
     4801 gcgtccggtt gaagggatgg cggcgattca acgtgcaatt gacagtgttt ctcattatct
     4861 ggtgctgaaa acagccatca gcatcatcac cggcctggtc gcctgggcga tgctcgccgc
     4921 actcgatgtt cgcttcgctt ttgtctgggg attgctggcc tttgcgctta attacatccc
     4981 taatattggt tcagttctcg cggcaatccc ccctatcgct caggtactgg tgtttaatgg
     5041 cttttacgaa gcgttgctgg tgctggcggg atatctgctg attaatctgg tcttcggcaa
     5101 tattctggag ccgcgcatca tgggacgtgg gctggggctt tccacattgg tggtattttt
     5161 gtcgttgatt ttttggggat ggttgttagg accggtgggt atgctgcttt ccgtgccgtt
     5221 aacaattatt gtcaaaattg cgcttgaaca aacagcggga ggtcaaagca tcgccgttct
     5281 gttaagcgat ctcaataaag agtgacggcc tccgcagagg ccgtcagggt tacagagctt
     5341 tcaggattgc atccacgctg gctttggcgt caccaaacag catgtgggtg ttttccttga
     5401 agaacagcgg gttttgcaca ccagcatagc cagtgttcat cgaacgttta aagacaatca
     5461 cgtcctgcgc tttccacact tccagcacag gcataccagc aataggactc ttcggatcat
     5521 cctgcgccgc cgggttaacc gtatcgttag caccaatcac cagtacggta tcggtatcag
     5581 caaagtcatc gttgatctcg tccatttcca gcacgatgtc atacggtact tttgcttcag
     5641 ccagcaatac gttcatatgt ccaggcaaac gccccgcaac cgggtggata ccgaaacgca
     5701 cgttgatacc acgagcgcgc agtttctcgg taatttcagc gacaggatat tgcgcctgcg
     5761 cgactgccat gccgtacccc ggagtaatga tcactgaatg ggagtttttc agcagttccg
     5821 ctgtctcttc tgcggtgatt tcgcggtgct cgcccacttc ctgatcatcg ccagtagaag
     5881 agccgtcggt gccgaaacca cccgcaataa cgctgataaa ggaacggttc atcgccttac
     5941 acataatgta agaaaggata gcccccgaag aaccgaccag cgcaccggtc acaatcagca
     6001 ggtcgttgct gagcataaag cccgcagccg cagccgccca gccggagtac gagttcagca
     6061 tcgacaccac cactggcata tctgcaccac cgatggaggc gactaaatgc cagccgaata
     6121 ccagcgcaat ggcggtcatt attagcaatg ccagcacttg caggccgacg ctgtccgtgc
     6181 gaacaaatac aatcagcagc aggaaggaaa cgaccagagc cgccaggttc attttgtgac
     6241 ggtttggcag catcaacggt ttagacgaaa tcttgccaca cagtttgccg aacgccacca
     6301 ccgaacccgt gaacgttacc gccccgatga agataccgag gaacacttcc gtcaggtgaa
     6361 tattgaccag aatcggtgcc attcccgcgt catgatgcag atagctgtta aagccaacca
     6421 gcactgccgc cagacccacg aagctgtgca ggatcgccac cagttctggc atttcggtca
     6481 tttcaacttt cttcgccaga cggataccaa ttgccccacc aatgaccatc gccagcaaga
     6541 tccagccaac attacccgta tccggtccaa aaatggttgc gattaacgca atcgccatcc
     6601 ctgcgatacc gaagttgtta ccctggcgag acgtttcatg tttcgaaaga ccggccagac
     6661 tgaagataaa caggatcgcg gcaacaatgt atgcagctgt aactaatcct ccagacatat
     6721 gttacccctt aatttttgcg gaacattttc agcatgcgct gagtcacggt gaagccaccg
     6781 aaaatattaa tgctggctat aagcaccgcg ataaaactaa ggaagctaac ccagccgccc
     6841 tggccaatct gcaacagtgc tccgacaaca ataatccctg aaatcgcgtt ggtgaccgac
     6901 atcaacggtg tatgcagcgc gtgcgataca ttccacacca cgtaataacc gacaacgcag
     6961 gccagcgcga aaacggtgaa gtgcccaaga aactctttcg gcgcaacgct tgccagccaa
     7021 ccgaaaagga tgattgccag cgccatcaac gcgtatttac gccacggtga gcaggcacat
     7081 ttttcctcag ttttcacttc cggtgccgct ttttgtgccg cctgcggctg agctgatacc
     7141 tgaatcggcg gtgccggcca ggtaatttcg cccgcacgga tcacggtcac gcggcgaatc
     7201 accacatcat caaaatcaac agtgatattg ccgtctttct ctttgcacaa cagtttcagc
     7261 agattaacga ggttagtacc gtaaagctgc gaggattgcg tcggcagacg gcccggaaga
     7321 tcggtataac caatcacttt gacaccattt tccgtagtga agatttcacc cggcacggtg
     7381 tattcacagt tgccaccgtt ttgggctgcc aggtcgacaa tcacactgcc cgtcttcatg
     7441 gagtcaacca tttcacgggt aattagcttc ggcgctggtt tgcctggaat aagcgcggtg
     7501 gtgacaatga tatcgacctc ttttgcctgg gcggcaaaga gttccatttc tgctttaatg
     7561 aacgcgtccg acatcacttt ggcatagcca tcgccgctgc ccgcttcctc tttaaaatcc
     7621 agctcgagga attccgcgcc catactttga acttgttctt tcacttccgg acgggtgtcg
     7681 aatgcacgca caatcgcgcc gagactgttt gctgcgccaa tggcggccag acctgcaaca
     7741 cccgcaccaa tcaccatcac ttttgccggt ggcactttcc cggccgcagt aatttgcccg
     7801 gtaaagaagc gcccaaattc atgtgccgct tcaacaatgg cgcgataacc ggcgatgttc
     7861 gccatcgagc ttagtgcgtc cagcgattgt gcgcgtgaga tacgcggcac agaatccatc
     7921 gccatcacgg tcacgttacg ttccgcaagt ttttgcatta attccggatt ctgcgcaggc
     7981 cagataaaac tcaccagcgt tgtcccagga ttcagtaacg caatttcatc atctaacggc
     8041 gcattgacct tcagaatgat ctctgactgc cagacgctat tcccttctac aatttcagcg
     8101 cccgcttgca caaacgcttt atcgtcaaaa cttgccagtt gacccgcgcc gctctctacc
     8161 gcgacggtaa aacccagttt cagcagctgt tccactgttt ttggcgttgc tgcaacacgg
     8221 gtttcattgg ttaaccgttc tcttggtatg ccaattcgca tgatattccc ttccatcggt
     8281 tttattgatg atggtttgcc tgtgtcagga gccacacaag ccgctcatgt acgagctaaa
     8341 tgttactccg ttaaaataaa ttagtaacaa acgccctata acgtactgaa aattatacct
     8401 gtgatctagc gccaaaaatc agtatttcgg cgtgaactcg caaaatatta acgattcagc
     8461 cgtgatagtg ggataaacac cttagaacgc cggataaaga ctgataattg tcttcgacgg
     8521 tcgggtaaaa cgagacatcg ccccggcacg attcactact taacattaaa ttaacttata
     8581 caattcagtt gcttcagtag taatgatgct gatacggctg ttttttaagc atagacggtc
     8641 atttgagcag gattaaaatt ggcttaagga atgtgatatg aaaaatgacg cagacagtta
     8701 caccgtttaa atgcaataat cagccacgtt tctcgttaat aacaatacca gtacctggtt
     8761 tgcgcaaggc gaaggattat ttttatgaag cttaagaaca ccctcctggc gtcggcactg
     8821 ctttctgcta cggcattctc cgttaacgca gcaacagaac tgacaccgga gcaagcggca
     8881 gcggttaaac cttttgaccg tgtagtggtt accggtcgtt ttaatgctat tggcgaagcg
     8941 gtgaaagccg tttctcgtcg cgcagataaa gaaggtgccg cctcttttta tgttgtcgac
     9001 acttctgatt ttggtaacag cggtaactgg cgtgtggtcg ctgacctcta taaagccgat
     9061 gctgaaaaag cagaagaaac aagtaatcgc gtaattaacg gtgttgtcga actgccgaaa
     9121 gatcaggctg ttctgattga accgtttgac acggtcaccg tccagggctt ctatcgtagc
     9181 cagccagaag tcaatgatgc catcaccaaa gcggcaaaag cgaaaggtgc ctactctttc
     9241 tacatcgttc gtcaaatcga tgccaaccag ggcggcaacc agcgtattac tgcattcatc
     9301 tataaaaaag atgctaagaa acgtatcgtc cagagcccgg atgtgatccc ggcagattcc
     9361 gaagcaggac gtgcagctct ggctgccggt ggcgaagccg cgaagaaagt tgagatccca
     9421 ggtgttgcga ctaccgcatc accaagttct gaagtcggtc gtttctttga aacccagtca
     9481 tcaaaaggcg ggcgttacac cgtcacgctc ccggatggca ctaaagtcga agaactgaac
     9541 aaagcgaccg cagcgatgat ggtcccgttc gatagcatca aattctctgg caactacggc
     9601 aacatgaccg aagtctccta tcaggttgcg aaacgtgccg cgaagaaagg tgctaagtat
     9661 taccacatca cccgccagtg gcaggaacgt ggtaataacc tgaccgtcag cgcagatctg
     9721 tataaataac tattcagtta ctcctataag gcggcttgat gccgcctttc gcatttttag
     9781 tcacaaattt ccccgcgacc attgcatgca gacacatctc ttcgtaaaat cccgcgcttc
     9841 agtggcaaac tccattttta tgcgttttgc cctaatattt attcttctta tcacgtttta
     9901 atcactggat atcgatggaa aagaaactgg gactgagcgc actcaccgcg ctggtattaa
     9961 gctcaatgct gggcgcgggt gttttcagtc tgccgcaaaa tatggcggca gttgccagcc
    10021 cggcagcact gctcatcggc tggggtatta ctggcgctgg cattttattg ctggcctttg
    10081 ccatgctgat cctcacgcgc attcgtcccg aacttgacgg cggtatcttt acctatgccc
    10141 gcgaagggtt tggcgagcta atcggctttt gttccgcatg gggatactgg ctgtgcgcag
    10201 tcatcgccaa cgtctcctat ctggtgatcg ttttttccgc gttaagcttt tttacggaca
    10261 cgccggaatt gcgcctgttc ggcgatggta atacctggca atcgatcgtc ggtgcatcgg
    10321 ctttattgtg gattgttcac tttttgatcc tgcgcggggt gcaaaccgct gccagcatta
    10381 acctggtggc gacactggca aaattgttgc cgctgggtct gtttgttgtg ctggcgatga
    10441 tgatgttcaa actggatacc ttcaagctcg acttcaccgg acttgtactt ggcgtacccg
    10501 tttgggaaca ggtgaaaaac accatgctga tcaccctgtg ggttttcatt ggtgtggaag
    10561 gtgccgtggt tgtttctgcg cgtgcgcgta ataaacgtga tgttggcaaa gcgacactgc
    10621 tggcggttct ctccgctctg ggcgtttact tgctggtaac gctgctttcg ctgggtgtgg
    10681 tggcacgtcc tgaactggct gaaattcgta acccgtcaat ggccggtctg atggtggaaa
    10741 tgatgggacc atggggcgaa atcatcatcg ctgccagttt gatcgtttcc gtttgcggcg
    10801 cgtacttaag ctggaccatc atggcggcag aagttccgtt cctggctgcc actcataaag
    10861 cattcccacg catttttgcg cgccagaacg cacaagctgc gccatccgcc tcactgtggt
    10921 tgaccaacat ctgcgtgcaa atttgtctgg tactcatctg gctgaccggt tccgattaca
    10981 acacgttgct gaccatcgcc tcagaaatga ttctggtgcc ctatttcctg gtcggcgcgt
    11041 tcttgctgaa aatcgcaacc cgtccactgc ataaagcggt aggtgtcggt gcctgcattt
    11101 atggcttatg gttattgtac gcctctggtc caatgcactt gctgttatcc gttgttctgt
    11161 atgcgccggg gctgctggtt ttcctgtatg cgcgcaaaac gcatacacat gataatgtac
    11221 tgaaccgtca ggaaatggtg ctgattggca tgctgttaat tgcctcagtt ccggcgacct
    11281 ggatgctggt gggataacgt tcatcccatc gttggatagc aaaggagata acgatgggta
    11341 aagcccagcc cttgccaata ttaattactg gcggaggtcg tcgcatcggc ctcgccctcg
    11401 cctggcattt cattaatcaa aagcaaccgg tgattgtcag ctatcggacg cactatccag
    11461 ccattgatgg actgattaag gcaggtgcgc agtgtattca ggctgatttt tcgaccaacg
    11521 acggtgtgat ggcgtttgcc gatgaagtac taaaaagcac ccatggtctg cgtgctattt
    11581 tgcataacgc cagtgcgtgg atggcggaaa aactgggtgc gccactggcc gacgtactgg
    11641 cttgcatgat gcagatccac gttaataccc catacctgct caaccatgcg ctggaaagat
    11701 tactgcgtgg gcacggacac gccgccagcg atatcattca ctttaccgat tatgtggtgg
    11761 agcgcggtag cgacaagcat attgcgtatg ctgcaagcaa agcggcactg gataatatga
    11821 cccgctcgtt tgcccgcaag ctggcaccgg aagtgaaagt gaattctatt gctccatcgc
    11881 tgatcctgtt taatgaacat gatgatgccg aatatcgaca acaggcgctg aataaatcac
    11941 tgatgaaaac cgcgcctggc gagaaagaag tgatcgacct ggtcgattac ttacttacca
    12001 gttgctttgt caccggacgc agtttcccac ttgatggcgg tcgtcatctg cgttaatgca
    12061 gctttatcca gcatataatc aacacccatg cgcttatccc ccaacacgca acagaaccaa
    12121 caaaagcggc gggcaagcgc atcattccgg tgaaatacca cagcgacacc aggtaaacaa
    12181 aatagggaat aatcgaccac atactaaaaa tgatggttgc gcgtaaggct tcaatgccgc
    12241 gttcgctggc aacaatataa tgcgcgataa gcgcaaaggt cgggaaaagt ggaatcagcc
    12301 cggcgatata ataatttttc gtttttgcta aaacaccaat caacagcact accagcgcac
    12361 cgagcgcggc tttgatttta ccttaacact tccataacaa gtcatcagta gaatacctga
    12421 tgaaaacttg tttagaaacg attgatagta agtaaaaaca gcgcggtgta ttgtgacgtt
    12481 tttatatcta ccgtgaatgt tatgaacact atcgtatttg tggaagatga tgcggaagtc
    12541 ggttcactga ttgccgcgta cctggcaaaa catgatatgc aggttaccgt agagccgcgc
    12601 ggcgaccagg ccgaagaaac cattttgcga gaaaatccgg atttggtgtt actcgacatc
    12661 atgctaccag gcaaggacgg cattaccatt tgtcgtgatt tacgcgcaaa gtggtctgga
    12721 ccgattgttc ttctaacctc tctcgatagc gatatgaacc acatcctggc actggaaatg
    12781 ggtgcctgcg actatattct caaaacgatg ccccctgctg ttttgctagc gcgtttacgt
    12841 ttgcatttgc gtcagaatga gcaagccaca ctgaccaaag gtcttcagga aacgtctctg
    12901 actccctaca aagccctgca tttcggcacg ttgaccatcg atcccatcaa ccgcgtagtc
    12961 accctggcta acactgaaat ctcgctctcg acagctgatt tcgaattatt gtgggaatta
    13021 gctacccatg ccgggcaaat catggaccgc gatgcattgc tgaaaaattt acgcggcgtc
    13081 agttatgacg gactggatcg taacgtggac gtggctattt cgcggttaag aaaaaaactg
    13141 ctcgataacg ccgcagaacc ttatcgcatt aaaactgtgc gtaacaaagg ctatcttttt
    13201 gcgcctcatg catgggaata agcgatgaaa aaactgttta tccagtttta cctgttattg
    13261 tttgtctgct tccttgtgat gtctctgctg gttgggttgg tgtacaaatt taccgccgaa
    13321 cgcgcgggca aacagtcgct ggatgatttg atgaacagtt cgctgtatct gatgcgcagc
    13381 gaattgcgtg agatcccccc acacgactgg ggtaagacgc tgaaagagat ggatttaaat
    13441 ctctctttcg atctgcgtgt cgagccactg agtaaatacc atcttgatga tatttccatg
    13501 caccgactgc gtggcggcga aattgtcgcc ctggacgatc agtacacgtt tttgcagcgt
    13561 atcccgcgca gccactacgt gctggcagtt ggtcctgttc cttatcttta ttatctccat
    13621 cagatgcgat tgctggatat cgccctgatc gcttttattg ctatttccct cgcctttccg
    13681 gtgtttatct ggatgcgtcc gcactggcag gatatgttaa aactggaagc agcggcgcaa
    13741 cgatttggcg atgggcatct ctatgagcgt atccactttg atgagggttc gagctttgaa
    13801 cgacttggta tcgcatttaa ccagatggcg gacaatatca acgccttgat tgccagcaaa
    13861 aaacagctta ttgacggtat cgctcacgaa ctgcgaacac cgttagtgcg cctgcgttat
    13921 cgactggaga tgagcgataa cctgagcgcc gccgagtccc aggcgttgaa tcgtgatatc
    13981 agtcaacttg aagctttaat tgaagagctg ctgacttatg cccgactcga tcgcccacaa
    14041 aacgagcttc atcttagcga accagacctg ccgttgtggc tgtcaacgca tctggcagat
    14101 attcaggcag taacgcccga taaaacggta cggataaaaa cgctcgtgca aggccattat
    14161 gcggcgttgg atatgcgctt aatggagcgc gtgctggata atttgctcaa taacgccctg
    14221 cggtactgcc attcaacggt tgaaaccagc ctgctactgt cggggaatag agcgacatta
    14281 attgttgagg atgatggccc agggattgcc ccagaaaacc gcgaacatat ctttgaacct
    14341 tttgttcgcc tcgatcccag ccgggatcgc tcaaccggcg gctgcgggct ggggctggca
    14401 attgtccact ctatagcact ggcaatgggc ggtacggtta attgtgacac cagcgaactg
    14461 ggtggtgctc gcttctcgtt tagctggccg ttatggcata acatcccgca atttacctct
    14521 gcctgacact acgcgcacga tggtcaagtc accaccattg tgctataaat taaggatgtt
    14581 gtaactaaag tggttaatat tatggcgcgt tacgatctcg tagaccgact caacactacc
    14641 tttcgccaga tggaacaaga gctggctgca tttgccgctc atcttgagca acacaagcta
    14701 ttggttgccc gcgtgttctc tttgccggag gtaaaaaaag aggatgagca taatccgctt
    14761 aatcgtattg aggtgaaaca acatctcggc aacgacgcgc agtcgctggc gttgcgtcat
    14821 ttccgccatt tatttattca acaacagtcc gaaaatcgca gcagcaaagc cgctgtccgt
    14881 ctgcctggcg tgttgtgtta ccaggtcgat aacctttcgc aagcagcgtt ggtcagtcat
    14941 attcagcaca tcaataaact caagaccacg ttcgagcata tcgtcacggt tgagtcagaa
    15001 ctccccaccg cggcacgttt tgaatgggtg catcgtcatt tgccggggct gatcaccctt
    15061 aatgcttacc gctcgctcac cgttctgcac gaccccgcca ctttacgttt tggctgggct
    15121 aataaacata tcattaaaaa tttgcatcgt gatgaagtcc tggcacagct ggaaaaaagc
    15181 ctgaaatcac cacgcagtgt cgcaccgtgg acgcgcgagg agtggcaaag aaaactggag
    15241 cgagagtatc aggatatcgc tgccctgcca cagaacgcga agttaaaaat caaacgtccg
    15301 gtgaaggtgc agccgattgc ccgcgtctgg tacaaaggag atcaaaaaca agtgcaacac
    15361 gcctgcccta caccgctgat tgcactgatt aatcgggata atggtgcggg cgtgccggac
    15421 gttggtgagt tgttaaatta cgatgccgac aatgtgcagc accgttataa acctcaggcg
    15481 cagccgcttc gtttgatcat tccacggctg cacctgtatg ttgcagatta acgcccggct
    15541 ttcatactgc cgaccatctg ttctggccgt acccagctgt caaactcggc ttcgctaaga
    15601 taccccagcg caagggccgc agcttttaag gtcagccctt ctttatgcgc ttttttggcg
    15661 atctccgcgg ctttgtcata accaatgtgg gtgttaagcg cagtcaccag catcagcgat
    15721 tcattgagta attgattgat tcgctcacga ttcggttcaa tacccactgc gcagtgtttg
    15781 ttaaaacttt ccatgccatc tgccagcaag cgcaccgatt gcaggaaatt atggatcacc
    15841 atcggacgga agacgttcag ttcaaagtta ccggaagcgc cacccatgtt gatcgccacg
    15901 tcgttcccca ttacctgaca gcagagcatg gttaatgctt cacactgggt tgggttcact
    15961 ttccccggca tgattgagct gcccggctca ttttccggga ttgagatttc accaattccg
    16021 cagcgcgggc cagaggccag ccagcggaca tcattggcga ttttcatcag tgacgcagcc
    16081 aaccctttca acgcgccgtg cgcctgaacc agggcatcac aggtcgcaag cgcttcaaat
    16141 ttgttcggcg cggtaacaaa cggtgcacag gtaatgactg ccagttcatc tgctacgcga
    16201 cgcgcatact ccggatgggt atttagtcca gtacccaccg ctgtaccgcc aagagccagt
    16261 tccgctacgt gaggcaggct gtattcgata tgtttgagat tatgctcgag catcgctacc
    16321 cagccggaaa tctcctgccc tagtgttagc ggcgtggcgt cctgcaagtg ggttcgaccg
    16381 attttgacga tatcggcaaa tgcacgcgat ttttcactca gtgtctgcgt cagggtttta
    16441 agctgcggaa tgagttgctt gcgcagcgcc agcagcgccg caacgtgcat cgccgtcgga
    16501 aagacatcgt tggaactttg gcttttgttc acgtcgtcgt tagggtgaac tttacgttcc
    16561 atcccgcgca cgccgccgag taattcactg gcccggttag ccagcacttc gttcatgttc
    16621 atgttacttt gcgtgccgga gccggtctgc cagatagcca gcgggaattc gtcgtcatgc
    16681 tgtcctgcca gtacttcatc cgccgcctgc cgaatggcgc tcgctttctc ttcagacaac
    16741 aagcctaaat cttcattaac ttttgccgct gcgcgcttgg ttagcgccag cgcatgaatc
    16801 agtgaggtgg gcattttctc cgtcgaaatg cggaaatgct ccagcgagcg ttgagtttgt
    16861 gcgccccaca gcttatctgc cgggacatca atcgccccca tcgaatcttt ttcgctgcgt
    16921 actgtattca tggcctgctc ctcacctgtt taattttttc tttctgtttt gctttcgcta
    16981 agcaactttt agctcactta ttatttacta tttgataaca agtgtttggt ctttcgtgcc
    17041 atgtaaaaaa accgccccga agggcggctc tgtttatttc acacagcgag tgcactgtgt
    17101 gagttgtatc tgctggaaga agtcatttcc tttatcatcc acaaggataa acgccgggaa
    17161 atcttccact tcaattttcc agatggcttc cattcccagt tccggatatt caacacattc
    17221 caggctctta atacttccct gcgccaatac agcggccgga ccaccgatac tgccaaggta
    17281 gaagccgccg tgttttttac aggcatccgt cacctgctgg ctgcggttgc ctttcgccag
    17341 catgatcata cttccgccct gcgcttgcag ttgatcgaca taagaatcca tccgtccggc
    17401 ggtcgttggg ccaagagaac cggaggcata accttccggc gttttggccg gacccgcgta
    17461 gtaaatcgga tgatctttaa tgtactgcgg cagcccttca ccgttatcca tccgctcttt
    17521 cagtttggcg tgagcaatat cacgaccgac gataatcgtg ccgttaagcg ataagcgtgt
    17581 agaaacggga tactgcgaca actgtgcgag gatctctttc atcggacggt taaggtcaac
    17641 gcgcaccgct tcgccttctc ccgctttacg cagctcttca gggatatatt tacctggatt
    17701 atgttccagt ttttcgatcc agatcccctg acggttgatc ttcgctttga tattacggtc
    17761 agcagagcag gaaacaccca taccaaccgg acaggatgcg ccgtgacgtg gcaggcgaat
    17821 cacgcgtatg tcgtgagcga agtatttacc accaaactgc gcacccagac cgagattttg
    17881 cgcttcgatc agcaattctt tttccagttc cacatcgcgg aatgcctgac cgtgctcatt
    17941 cccttccgtt ggcagttcgt catagtattt agcggaagcc agtttcactg ttttaaggtt
    18001 agtttctgca gaagttccac caattacgaa cgcaatatga tacggaggac aggccgccgt
    18061 acccagcgtg cgcatcttct caaccaggta atttttcagt ttccccggcg ttagtaacgc
    18121 tttggtttcc tgatagagat acgtcttgtt tgccgaacca ccacctttgg cgatacagag
    18181 gaatttgtac tcgtcgccat caacggcata aagatcgatc tgcgctggca gattggtgcc
    18241 ggtattcacc tctttataca tatccagcgg cgcgttttgc gagtagcgca aattatcttc
    18301 gatataagtg ttatagacac cgcgcgccag cgccgcttca tcacagccac cggtccatac
    18361 acgctgccct tttttaccaa caataatcgc agtgccggta tcctgacagg ttggcagaac
    18421 acctttcgcc gcgatgtcgg agttgcgcag gaattgcagc gccacatatt tatcattttc
    18481 gctggcttcc gggtcacgca gaatgtcggc cacctgttgt tggtgagccg gacgcagcat
    18541 aaatgacgca tcatgaaacg cctgacgcgc caacagagtt aacgcttcgg gtgcgacttt
    18601 caaaatctcc tgcccttcaa attcagatac gctaacgtgt tcgctggtta gcaggtaata
    18661 ctcagtatca tcttttttga gtggaaaagg agcctgataa tgaaagggtt tgtttgacat
    18721 tgttctctca cttactgcct ggtttggtta tgctctgggc gggtgttccg ttgccctgtt
    18781 aaaagcgagt aacaatatcc tacacacttt tttaacaaaa actgagacta gtacgacttt
    18841 ttgcggctcc aggttacttc ccgtaggatt cttgctttaa tagtgggatt aatttccaca
    18901 ttaaaacagg gattgatcat gcaaaaactc attaactcag tgcaaaacta tgcctggggc
    18961 agcaaaacgg cgttgactga actttatggt atggaaaatc cgtccagcca gccgatggcc
    19021 gagctgtgga tgggcgcaca tccgaaaagc agttcacgag tgcagaatgc cgccggagat
    19081 atcgtttcac tgcgtgatgt gattgagagt gataaatcga ctctgctcgg agaggccgtt
    19141 gccaaacgct ttggcgaact gcctttcctg ttcaaagtat tatgcgcagc acagccgctc
    19201 tccattcagg ttcatccaaa caaacgcaat tctgaaatcg gttttgccaa agaaaatgcc
    19261 gcaggtatcc cgatggatgc cgccgagcgt aactataaag atcctaacca caagccggag
    19321 ctggtttttg cgctgacgcc tttccttgcg atgaacgcgt ttcgtgagtt ttccgagatt
    19381 gtctccctac tccagccagt cgcaggtgca catccggcaa ttgctcactt tttacaacag
    19441 cctaatgccg aacgtttaag cgaactgttc gccagcctgt tgaatatgca gggtgaagaa
    19501 aaatcccgcg cgctggcgat tttaaaatcg gcgctcgaca gtcagcaggg tgaaccgtgg
    19561 caaacgattc gtttaatttc tgaattttac ccggaagaca gcggcctgtt ctccccgctg
    19621 ttactgaatg tggtgaaatt gaatcctggc gaagcgatgt tcctgttcgc tgaaacaccg
    19681 cacgcttacc tgcaaggcgt ggcgctggaa gtgatggcga actccgataa cgtgctgcgt
    19741 gcgggtctga cgcctaagta cattgatatt ccggaactgg ttgccaatgt gaaattcgaa
    19801 gccaaaccgg ctaaccagtt gttgacccag ccggtgaaac aaggtgcaga actggacttc
    19861 ccgattccag tggatgattt tgccttctcg ctgcatgacc ttagtgataa agaaaccacc
    19921 attagccagc agagtgccgc cattttgttc tgcgtcgaag gcgatgcaac gttgtggaaa
    19981 ggttctcagc agttacagct taaaccgggt gaatcagcgt ttattgccgc caacgaatca
    20041 ccggtgactg tcaaaggcca cggccgttta gcgcgtgttt acaacaagct gtaagagctt
    20101 actgaaaaaa ttaacatctc ttgctaagct tattaaaggc ttataacacc ttcaggcggc
    20161 cagtccgcct gatttcattt tatggataat cattatgaat aaatcgctgg tagcggtagg
    20221 cgtcattgtt gcgctaggcg tagtctggac aggcggcgca tggtatacag gcaagaagat
    20281 tgaaacccat ctcgaagaca tggtcgcgca ggcgaacgcg caactaaaac tgacagctcc
    20341 tgaatccaac ctggaagtga gttatcaaaa ctatcatcgc ggcgtattca gcagtcagtt
    20401 gcaactgttg gtgaaaccca ttgccgggaa agaaaatccg tggattaaaa gcggtcagag
    20461 cgtcatcttc aacgaatcgg ttgatcatgg tcccttcccg cttgcccagc ttaaaaaact
    20521 gaacctgatc ccgtcgatgg catcaattca aaccacgctg gttaataacg aagtaagcaa
    20581 accactgttt gatatggcaa aaggtgaaac gccttttgag attaactcgc gcattggtta
    20641 cagcggtgat tccagttccg atatttcgct caagccactg aattacgagc aaaaggatga
    20701 aaaagtcgcc tttagcggcg gcgagttcca gttaaatgct gacagagacg gcaaagccat
    20761 ctccctttcc ggggaggcgc aaagtggtcg gatagacgca gttaacgaat acaaccagaa
    20821 agtgcagttg acctttaata atctgaaaac cgacggttcc agcacgctgg caagttttgg
    20881 tgagcgcgta ggaaaccaaa aactgtcact ggaaaaaatg accatttcag tggaaggcaa
    20941 agaactggca ctgctggaag gcatggagat cagcggtaaa tcggatctgg tcaatgacgg
    21001 taaaacgatc aatagccaac tggattactc gctaaacagc ctgaaggtac agaatcagga
    21061 tctgggcagc ggcaagctga ctttaaaagt cggccagatt gatggtgaag cctggcatca
    21121 gttcagccag caatataacg cgcaaactca ggcgctgctg gcacagccag aaattgccaa
    21181 caatcccgaa ctttatcagg agaaagtgac ggaagccttc tttagcgccc tgccgctgat
    21241 gttgaaaggc gatccggtga ttactgtcgc gccgctaagc tggaaaaaca gtcagggtga
    21301 aagtgcgctg aatctgtcgc tgttcctgaa agatccggca acgactaaag aagcgccgca
    21361 aacgctggcg caggaagtag atcgttcggt taaatctctg gatgcgaaac tgaccattcc
    21421 ggtggatatg gcaactgagt ttatgactca ggtagcgaag ctggaaggtt atcaggaaga
    21481 tcaagcgaaa aaactggcga aacagcaagt tgaaggtgca tcagcaatgg ggcagatgtt
    21541 ccgtctgacc accttgcagg acaataccat caccaccagc ctgcaatata ctaacggtca
    21601 gataacgtta aatgggcaga aaatgtcgtt agaagatttt gttggcatgt ttgcgatgcc
    21661 agctcttaac gttccggctg taccggcaat tccgcagcag taattcacgg ccaaaacgcc
    21721 ggagaatttt cacttcggcg ttttcaaacc agagattgcc tgatgcgcta cgcttatcag
    21781 gcctaccttt tcctgcaata ctttgaattt atgagttttt gtaggctgga taaggcgttt
    21841 acgccgcatc cggcataaaa aacgcgcact ttgtcaacaa tctgaaacgc cggaggtttt
    21901 tctctccggc gttatttctt acttcagcat aaagtcatac tgaatactca ttttcacatc
    21961 ccagtaattc aggcgatcgc ccagcgtact gccatcgcgc ttttcccgcc ctttatcggc
    22021 agcaagaaag aaattcatcc cttgtaacgg cccttcgctg acccgatagt tcataccacc
    22081 taagataccc gtgccttcaa tccgcacatc tcgtttactg gattcatagc cgcgagtcac
    22141 aatcggtgca aatgtcagtg taaattgcgg cgttaaacga tagttgacgc ccaattgcca
    22201 ggactgcatt ccttcacggt tacgatcaag acttaatgaa aagggatagc caatgtcggt
    22261 atccaccacg gcaccattca ttgcatggcg caaataacca ccactgccaa atacgcttcc
    22321 ccacggcgca ttccaggtca attgtccact aaccaacgcc gtttcattgg gctggctggt
    22381 attacgactt aaaccttcga gctgcgcgta aaagccgagc aactcccctt tcaacgtata
    22441 attcgggtcg agcggtatgc ttttctcgag aatactttgt atctgattgg aaacatcttt
    22501 ctgtaccgat gcccccagag aatagcgact ggtatcatca tgccaactgg cggctaaaaa
    22561 agaacgtgcg cgatgtttat cgtattttcc cgtctggctg ttatacaccc cttcatcacg
    22621 aataccggtt gttgaatcag tccataaaaa tactcgtgaa cgccacattc cccacagatc
    22681 aatatttggt gttaaagccc aataacctaa tgctccttca gaaactgtcg gtaatgtacg
    22741 ttgcgaactg ccagccatta acggaatacg ataaggtaag ctaccataac tataatccgt
    22801 cccgaagcga cctaatttaa gcaggctatt ttcacagggt tttattttta ctgcccccag
    22861 ggcaaagcca aaacttttat caccatcaag ataccaccgg gtactcatat cagcacgagc
    22921 acctaattta taaacataat atgccccgcc ttcaacgcca ataatattgg aataataacc
    22981 actattgaaa tcgaacaatc ctctctgtac ccatgcgtaa atatctcttc ccgcgccagc
    23041 actgggctta tccgccctgc gcaattcgtt tttcagtctg atgcgtagtc ccgcttcatc
    23101 gtcagccagt tgcgccgcat aagcagaggt aaggccagag gcagccgtca ggcaaataac
    23161 ggccatggcc actatttttc tcatagttgc acctttgatg ttctgattat ttttattgaa
    23221 tattaattag tgatatcgct gattaattgc tgctgcactt ttttacgatt atcaatttca
    23281 accacgattt ctttgaattt tttatccgtg agcggataaa accagataat aacgaatgcc
    23341 agtagcataa atccgcaagg tactaaggca attgatgtgc ggatgctcat aataacttcc
    23401 ggcgtttgca cctgattggc gatatatccg cttaatccca aaataaaggc aggaattgaa
    23461 cctccgattg cctgaccgca tttacgggta aatgagaata gtgaataggt gagcccttca
    23521 attcgcacgc cggtcaggta ttcaccgtat tctacggtat cagcttccag tgcccacatc
    23581 acagtcatag taacgccctg accaattgaa gcgatggcca acgcaaccaa cgccaccggc
    23641 agtgaccaga cggaaaccca gaagaatagc agataaccgc aggttcccag caaagcgcca
    23701 atcaggaagg tattcttttt accgctcctc gcgaccatcc ccggcaccag cggtgccgat
    23761 gccacagtac caaccaagtt ttgcaccagt accagcacag tgaacagccc ggtatcattt
    23821 aacacatagc gctcgtagaa caacgacgag gcgctgaccg caaaggtcga aatcagcaca
    23881 cacagcgcac cgatgcacaa cataaacagc gggcgattcc gtttcagggt ttgcagactg
    23941 atcttcaatg acggctgcgc aacgatacgt accacattct cacgcgtcga tttgaagcag
    24001 atgaagtaaa gcaccattcc ggcaatcgcc agcacaatcg tccagaaatg gtataccgac
    24061 accatctctt ccgggctgga gttcttaatg ctcggcccta tcagaaatgc caggcagaca
    24121 aaggtcaatg aagcggcaat cccacgagcc gcgcccagac gggcgcggga ttgtggttgt
    24181 tgggtcatcg cggtagcaag tgaaccataa ggaatattca ccaggctata gcaaagcccg
    24241 aggcccatgt aggtcaaata tgcatacact actttgctgc tatggctcca gtcggtcggt
    24301 acccagaata ccagcacgct gaagatcatt aacggcgcag taccgaagag taaaaacggg
    24361 cggaattttc cccagcgggt attcacactg tccaccactc gtccggcaaa gacgtcggcg
    24421 aaggcatcga atacccgcac caataacagc atggtgcccg ccgcagcggc accgacgcaa
    24481 gcgacgtcgg tgtagtaact caacaggaag agcgccccca ttgcgaaggc gaagttattg
    24541 gcgacgtcac cgaggctgta gccgacgatg gtgcgccagg agagttgttg attcattgtt
    24601 tgcctccctg ctgcggtttt tcaccgaagt tcatgccagt ccagcgtttt tgcagcagaa
    24661 aagccgccga cttcggtttg cggtcgcggg tgaagatccc cttcttgtta ccgccaacgc
    24721 gcaatatgcc ttgcgaggtc gcaaaatcgg cgaaattcca tacctgttca ccgacgccgg
    24781 cactgacgcg atcaaagacg cggtgataca tatccagcca tgcacactga tactcttcac
    24841 tccacatgtc ggtgtacatt gagtgcagcc cggctaacgt atccacgccg tattcggtga
    24901 tgataatcgg ctgatgcagt ttctcctgcc aggctagaag ttctttttcc agtaccttct
    24961 ctgccgtttc caaatcgccg ctttggacat accatccgta ataacggttc aggcacagca
    25021 catcaaagag atcgctgatg gtatcggtgt gagcgtcgca gaacattaca ttgacgcagg
    25081 tgatcggacg cgtcgggtcg agtttacgcg ttgcttccgc cagtggcgcg aaatattctc
    25141 gtgcaccttg cggacgggta tccggttcgt tggcaatact ccacatcacc acgcttgggt
    25201 ggtttttgtc acgcgctatc agctctttaa tcgcctgtaa atgcgcctgc tgagtttccc
    25261 cgttgacagc ctcttcgctg tacagttctt tcggcttgtt gcccgcttcg aaaccaatgc
    25321 ctaaagagag gttaaagccg acagctgcag tttcatcaat caccacgatg ccatgttcat
    25381 ctgcccactc gagcatctct tcagcgtaag ggtaatgcga ggttcggtag gagttggccc
    25441 caatccagtc cattaatgcg tgatcgtgca ccatcagcac gttatcgaat cctttgcctc
    25501 gcaaatccgc atcttcatga cgaccaaagc cagtaaagta gaacggtttg tggttgttcg
    25561 tccttcactg ccactgaccg gatgccgacg cgcagcgggt agatatcaca ctctgtctgg
    25621 cttttggctg tgacgcacag ttcatagaga taaccttcac ccggttgcca gaggtgggga
    25681 ttcaccactt gcaaagtccc gctggtacct tgtccagttg caaccacctg ctgatccgca
    25741 tcacgcagtt caacgctgac atcaccattt gctaccacct gccagtcaac agacgcgtgg
    25801 ttacagtctt gcgcaacatg cgtcaccacg gtgatatcgt ccacccaggt gttcggcgtg
    25861 gtgtagacca ttacgctgcg atggatcccg gcatagttaa agaaatcatg gaagtaagac
    25921 tgctttttct tgccgttttc atcggtaatc accattcccg gcgggatagt ctgccagttc
    25981 agttcgttgt tcacacaaac ggtgatacgt acacttttcc cggcaataac atacggcgtg
    26041 acatcggctt caaatggcgt atagccgccc tgatgctcca tcacttcctg attattgacc
    26101 cacactttgc cgtaatgagt gaccgcatcg aaacgcagca cgatacgctg gcccgcccaa
    26161 cctttcggta taaagacttc gcgctgatac cagacgttgc ccacataatt acgaatatct
    26221 gcatcggcga actgatcgtt aaaactgcct ggcacagcaa ttgcccggct ttcttgtaac
    26281 gcgctttccc accaacgctg atcaattcca cagttttcgc gatccagact gaatgcccac
    26341 aggccgtcga gttttttgat ttcacgggtt ggggtttcta caggacgtaa cataagggac
    26401 tcctcattca aataaaaata ctggtcaacc tttaatctga ttagttaacc aattctgtgt
    26461 tgcacacagt tatctgtgag aaacccatgg aagagaaatg gaaataaaaa gaactgacac
    26521 cgcgatcaaa aaaccaaaat ctgcaatacg cacagcgtga tatagatcgc attaatcttt
    26581 aaaacagcgt tgacagaagc cataaaataa gcaatcgaac gctcgttcga gcatcttgag
    26641 aacgataaac tctcatgaca tatggctacg gtgaatattt tgggggggaa ttctccgatc
    26701 ccggctagat tgtattttgt acagggaaat taaagtatga aacgcgggca cagttatcac
    26761 cagcccgcga aatgagagga tcaggatgcg gttaagatac cgccaatcat cgcgcgtaat
    26821 ccctgagcaa acgacgcttc acgcgccaga tcttccgctt cgatatcggc cagtacaccg
    26881 taggtcagat ccagcagtaa acgtgaagtc attgacgtgt tgatgtctgg gcttatctcg
    26941 cctttttgct gggcatcacg catccgctgg gcaacaaatt cagtgatcgt catatgctta
    27001 tttttaagca tggcggcgac ctgtgggtta cgcatccctt ccgccataat ttcgaccacc
    27061 agcgcccgtt gcccaaaggc ttcatgggtg agagagacaa tagactcgac catatagtca
    27121 acaaaatgaa tcccttcaat cggttcccgg aaacgggcca gcgccctctc ctggtcctgt
    27181 aagataatcg cctgaatcaa ggcttctttg gagatgaaat ggtgataaag cgtcccggga
    27241 ctaatggcgc aggatttaca gatggctttc atcgaggcac tgtgaaatcc attttctgaa
    27301 aaaatctctc tggcagcatt gaggatccgg gtccgtgtcg gttgtgcttc agtctgcatg
    27361 ttatccatca ttaaaccatt atagttagcg tgaataacta gtttaccgcg ttgtcaggtg
    27421 agcgcctatc attgctgttg aatagtgcga aggcacactc tattcgtatg cttttcatcc
    27481 agctattggt taaccaatag ccgtgatttg gctgccagtt gtttagcaga gacgttgatg
    27541 aattgcacac gctatcccgg taaacaacac atacggctgt ttaccggttc gttagtgtat
    27601 taattgagct cctgtacccc accaccggag acggtgagaa tttgtccgct tacccagctg
    27661 gctgcaggcg agcaaaggaa cagcgccgcg ttagcaatat cttgcggttg acccagacgt
    27721 ctgatcggcg tgtgctgtaa cattttttgt tcaatttctg gtgtaataac ggatttcagg
    27781 gcatcggtta atattgcccc cggcgcaatg ccattcaccc gaatattttt ttcacccagg
    27841 tcaaatgcca tatttctgac cagatgactg gccgcagctt tagatgatgc ataggaagtc
    27901 atgtttatat ttttattttc tgccgccata gaagtgatgg tcagaataac gccaccgcca
    27961 tttttttcca tttctggcgc aacaagttgt gacagatgga aaaaagaaaa cacattcagt
    28021 tcataagcac ggcgaaaatc cgccattggc atatcaaacg gtttaggtcc accgccaccg
    28081 gcgttgttaa ccagaatatc aactttaccc agcttactga tagcaaagtc tgccagtgca
    28141 gagagttcct gttcggaagt aatatcacaa cggcaggcaa atgcctgccc ccccagttgt
    28201 tgaatttcgt ctacaacatg gttagctgcg tcggcgttaa tatcactgac caccacagat
    28261 gcgccagctg tcgcgaatgt aatggcgatt tctttaccaa tacctgcacc cgcacctgtg
    28321 atgatggcgc attttccgtc gagtctcagg ttgtcagaat taaacacata aacctcctgt
    28381 gaacttcagt aaaaataaaa ggcaccgcct
//
LOCUS       DAJVSY010000036        28224 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.036, whole genome shotgun sequence.
ACCESSION   DAJVSY010000036 DAJVSY010000000
VERSION     DAJVSY010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 28224)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28224)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28224
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.036"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..856)
                     /locus_tag="OQQ19_001435"
     CDS             complement(<1..856)
                     /locus_tag="OQQ19_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000239477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE9 sensor domain-containing protein"
                     /protein_id="HCS1803109.1"
                     /translation="MVKKPQQGTIFAAAQRSDSYFVKCINMLSLYEKIKIRLIILFLL
                     AALSFIGLFFIINYQLVSERAVKRADSRFELIQKNVGYFFKDIERSALTLKDSLYLLK
                     NTEEIQRAVILKMEMMPFLDSVGLVLDDNKYYLFSRRANDKIVVYHQEQVNGPLVDES
                     GRVIFADFNPSKRPWSVASDDSNNSWNPAYNCFDRPGKKCISFTLRINGKDHDLLAVD
                     KIHVDLNWRYLNEYLDQISANDEVLFLKQGHEIIAKNQLAREKLIIYNSEGNYNIIDS
                     VDTEYIAKT"
     gene            complement(956..1867)
                     /gene="gsiD"
                     /locus_tag="OQQ19_001436"
     CDS             complement(956..1867)
                     /gene="gsiD"
                     /locus_tag="OQQ19_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter permease GsiD"
                     /protein_id="HCS1803110.1"
                     /translation="MRLFNWRRQAVLNAMPLVKPDQVRTPWHEFWRRFRRQHMAMTAA
                     LFVILLIVVAIFARWIAPYDAENYFDYDNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQ
                     ISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRICDVLFAFPGILLAIAVVAVL
                     GSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDMTILLRHILPGT
                     VSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVAVFPA
                     LAIFLTVLAFNLLGDGLRDALDPKIKG"
     gene            complement(1870..2790)
                     /gene="gsiC"
                     /locus_tag="OQQ19_001437"
     CDS             complement(1870..2790)
                     /gene="gsiC"
                     /locus_tag="OQQ19_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter permease GsiC"
                     /protein_id="HCS1803111.1"
                     /translation="MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEAD
                     AQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLT
                     ITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELG
                     WLPTVGADSWQHYILSSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWV
                     VLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQA
                     EILLFSLEFILINLVVDVLYAAINPAIRYK"
     gene            complement(2808..4346)
                     /gene="gsiB"
                     /locus_tag="OQQ19_001438"
     CDS             complement(2808..4346)
                     /gene="gsiB"
                     /locus_tag="OQQ19_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter substrate-binding
                     protein GsiB"
                     /protein_id="HCS1803112.1"
                     /translation="MARAVHRSGLVALGIATALMASCAFAAKDVVVAVGSNFTTLDPY
                     DANDTLSQAVAKSFYQGLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGT
                     DFNAAAVKANLDRASDPANHLKRYNLYKNIAKTEAIDPTTVKITLKQPFSAFINILVH
                     PATAMISPAALEKYGKEIGFHPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSI
                     TWRPVADNNTRAAMLQTGEAQFAFPIPYEQAALLEKNKNIELMASPSIMQRYISMNVT
                     QKPFDNPKVREALNYAINRPALVKVAFAGYATPATGVVPPSIAYAQSYKPWPYDPVKA
                     RELLKEAGYPNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEV
                     EGKGQKESGVRMFYTGWSASTGEADWALSPLFASQNWPPTLFNTAFYSNKQVDDFLAQ
                     ALKTNDPAEKTRLYKAAQDIIWQESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSFED
                     ADLQ"
     gene            complement(4366..6237)
                     /gene="gsiA"
                     /locus_tag="OQQ19_001439"
     CDS             complement(4366..6237)
                     /gene="gsiA"
                     /locus_tag="OQQ19_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415350.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter ATP-binding protein
                     GsiA"
                     /protein_id="HCS1803113.1"
                     /translation="MPHSDELDAGNVLAVENLNIAFMQDQQKIAAVRNLSFSLQRGET
                     LAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLQRRSREVIELSEQSAAQMRHVR
                     GADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQNASREEAMVEAKRMLDQVRIPEAQT
                     ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM
                     SMGVIFITHDMGVVAEIADRVLVMYQGEAVETGTVEQIFHAPQHPYTRALLAAVPQLG
                     AMKGLDYPRRFPLISLEHPAKQEPPIEQKTVVDGEPVLRVRNLVTRFPLRSGLLNRVT
                     REVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS
                     PGKLQALRRDIQFIFQDPYASLDPRQTIGDSIIEPLCVHGLLPGKDAAARVAWLLERV
                     GLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD
                     LQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLLAA
                     VPVAEPSRQRPQRVLLSDDLPSNIHLRGEEVAAVSLQCVGPGHYVAQPQSEYAFMRR"
     gene            complement(6224..7189)
                     /gene="iaaA"
                     /locus_tag="OQQ19_001440"
     CDS             complement(6224..7189)
                     /gene="iaaA"
                     /locus_tag="OQQ19_001440"
                     /EC_number="3.4.19.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-aspartyl-peptidase"
                     /protein_id="HCS1803114.1"
                     /translation="MGKAVIAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLE
                     AGESALDVVTEAVRLLEECPLFNAGIGAVFTRDETHELDACVMDGNTLKAGAVAGVSH
                     LRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPAIFSTPLRYEQLLAARKEG
                     ATVLDHSGAPLDEKQKMGTVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGC
                     YANNASVAVSCTGTGEVFIRALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGG
                     LIAIGHEGNVALPFNTEGMYRAWGYAGDTPTTGIYREKGDTVATQ"
     gene            7393..8628
                     /gene="moeA"
                     /locus_tag="OQQ19_001441"
     CDS             7393..8628
                     /gene="moeA"
                     /locus_tag="OQQ19_001441"
                     /EC_number="2.10.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HCS1803115.1"
                     /translation="MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDV
                     VSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGA
                     PVPEGCEAVVMQEQTEQTDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAE
                     LPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGC
                     EVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKL
                     AIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVR
                     TASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGN
                     VDVGEWVEVEPFNALFGGL"
     gene            8628..9377
                     /gene="moeB"
                     /locus_tag="OQQ19_001442"
     CDS             8628..9377
                     /gene="moeB"
                     /locus_tag="OQQ19_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HCS1803116.1"
                     /translation="MAELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGC
                     AASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHNDATVGQPKVESARDALTRINPHIA
                     ITPVNALLDDAELAALIAEYDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQ
                     ITVFTYQDGEPCYRCLSRLFGENALTCVEAGVMAPLIGVIGSLQAMEAIKLLAGYGKP
                     ASGKIVMYDAMTCQFREMKLMRNPGCEVCGQ"
     gene            complement(9453..10115)
                     /gene="fsa"
                     /locus_tag="OQQ19_001443"
     CDS             complement(9453..10115)
                     /gene="fsa"
                     /locus_tag="OQQ19_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HCS1803117.1"
                     /translation="MELYLDTSDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLDVVLP
                     QLHEAMGGQGRLFAQVMATTAEGMVNDARKLRSIIADIVVKVPVTAEGLAAIKMLKAE
                     GIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLHQLLKMHAPQA
                     KVLAASFKNPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDWLGAFGRT
                     SI"
     gene            10246..11145
                     /locus_tag="OQQ19_001444"
     CDS             10246..11145
                     /locus_tag="OQQ19_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415345.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl-radical enzyme activating protein"
                     /protein_id="HCS1803118.1"
                     /translation="MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARTQDL
                     LYDARLCLEGCELCAKAAPEVIERALNGLLIHREKLTPEHLTALTDCCPTQALTVCGE
                     VKSVEEIMATVLRDKPFYDRSGGGLTLSGGEPFMQPEIATALLQACHEAGIHTAVETC
                     LHVPWKYITPSLPYIDLFLADLKHIADAPFKQWTDGNAAKVLDNLKKLAAAGKKIIIR
                     VPLIQGFNADETSVKAITDFAADELHVGEIHFLPYHTLGINKYHLLNLSYDAPEKPLD
                     APDLLDFAQQYACQKGLTATLRG"
     gene            11151..13583
                     /locus_tag="OQQ19_001445"
     CDS             11151..13583
                     /locus_tag="OQQ19_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl radical protein"
                     /protein_id="HCS1803119.1"
                     /translation="MTTLKLDTLSDRIKAHKNALVHIVKPPVCTERAQHYTEMYQQHL
                     DKPIPVRRALALAHHLANRTIWIKHDELIIGNQASEVRAAPIFPEYTVSWIEKEIDDL
                     ADRPGAGFAVSEENKRVLHEVCPWWRGQTVQDRCYGMFTDEQKGLLATGIIKAEGNMT
                     SGDAHLAVNFPLLLEKGLDGLREKVAERRSRINLTVLEDLHGEQFLKAIDIVLVAVSE
                     HIERFAALAREMAATETRESRRDELLAIAENCDLIAHQPPQTFWQALQLCYFIQLILQ
                     IESNGHSVSFGRMDQYLYPYYRRDVELNQTLDREHAIELLHSCWLKLLEVNKIRSGSH
                     SKASAGSPLYQNVTIGGQTLVDGQPMDAVNPLSYAILESCGRLRSTQPNLSVRYHAGM
                     SNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKW
                     GYRCTGMSFINFARVMLAALEGGRDATSGNVFLPQEKALSAGNFNNFDEVMDAWDTQI
                     RYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGI
                     ANLGNSLAAVKKLVFEQGAIGQQQLAAALADDFDGLTHEQLRQRLINGAPKYGNDDDT
                     VDTLLARAYQTYIDELKQYHNPRYGRGPVGGNYYAGTSSISANVPFGAQTMATPDGRK
                     AHTPLAEGASPASGTDHLGPTAVIGSVGKLPTAAILGGVLLNQKLNPATLENESDKQK
                     LMILLRTFFEVHKGWHIQYNIVSRETLLEAKKHPDQYRDLVVRVAGYSAFFTALSPDA
                     QDDIIARTEHML"
     gene            13729..14544
                     /gene="ybiV"
                     /locus_tag="OQQ19_001446"
     CDS             13729..14544
                     /gene="ybiV"
                     /locus_tag="OQQ19_001446"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphatase YbiV"
                     /protein_id="HCS1803120.1"
                     /translation="MSVKVIVTDMDGTFLNDAKMYNQPRFMAQYQELKKRGIEFVVAS
                     GNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQL
                     NFVACGLQSAYVSENAPEAFVALMAKHYHRLKAVKDYQEIDDVLFKFSLNLPDEQIPL
                     VIDKLHIAFDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGN
                     DAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTSPFNS"
     gene            14696..15961
                     /locus_tag="OQQ19_001447"
     CDS             14696..15961
                     /locus_tag="OQQ19_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1479 domain-containing protein"
                     /protein_id="HCS1803121.1"
                     /translation="MASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIA
                     TRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGW
                     DQSMLDYLDRNRFDEVYKGPGDNFFGTLSTSRPEIYPIYWSQTQMQARQSEEMANAQS
                     FLNRLWTFESDGKQWFNPDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQ
                     RVFANVFNGNLAQYDPWHAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLL
                     HVVPIPEAMAYVLLRPLLDDVPEDELCGVAPGRVLPVSEQWHPLLIEALTSIPKLEAG
                     DSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAHKVKAALEKGASPGDFP
                     HEDYETNWEGRFTLADLNIHGKRALGMDV"
     gene            complement(16202..17794)
                     /locus_tag="OQQ19_001448"
     CDS             complement(16202..17794)
                     /locus_tag="OQQ19_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATPase"
                     /protein_id="HCS1803122.1"
                     /translation="MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFM
                     KILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRI
                     YALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGW
                     KLRVLLAQALFADPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMV
                     CTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANA
                     SKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPL
                     FKNLNLLLEVGEKLAVLGTNGVGKSTLMKTLVGDLQPDSGTVKWSENARIGYYAQDHE
                     YEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFG
                     KLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEI
                     TPERVIDFSGNYEDYLRSKGIE"
     gene            18013..18933
                     /gene="ldtB"
                     /locus_tag="OQQ19_001449"
     CDS             18013..18933
                     /gene="ldtB"
                     /locus_tag="OQQ19_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HCS1803123.1"
                     /translation="MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVIT
                     IPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIV
                     INSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE
                     YRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDI
                     KFLFEKVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKS
                     VQTVTGQPDVDQVVLDEAIKNRSGMPVRLN"
     gene            complement(18992..20110)
                     /locus_tag="OQQ19_001450"
     CDS             complement(18992..20110)
                     /locus_tag="OQQ19_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion transporter"
                     /protein_id="HCS1803124.1"
                     /translation="MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHT
                     IITLSGLMLLTKGVELSGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVAL
                     FIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFI
                     AQMAPLAGAMMLTLLLLCWCCFPGKVLQYHTGVQTPEWKPRLVWSCLGLYIVFLTALE
                     FKQELWGLVIVAAGFALLARRVVLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLGNVS
                     HLSEPGLWLTAIGLSQVISNVPSTILLLNYVPPSLLLAWAVNVGGFGLLPGSLASLIA
                     LRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVILPAN"
     gene            complement(20107..20574)
                     /gene="mntR"
                     /locus_tag="OQQ19_001451"
     CDS             complement(20107..20574)
                     /gene="mntR"
                     /locus_tag="OQQ19_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese-binding transcriptional regulator
                     MntR"
                     /protein_id="HCS1803125.1"
                     /translation="MSRRAGTPTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVEL
                     ISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLA
                     QESRERHQIVENFLLVLGVSPEIARRDAEGMEHHVSEETLDAFRLFTQKHGTK"
     gene            20760..20888
                     /gene="mntS"
                     /locus_tag="OQQ19_001452"
     CDS             20760..20888
                     /gene="mntS"
                     /locus_tag="OQQ19_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganase accumulation protein MntS"
                     /protein_id="HCS1803126.1"
                     /translation="MNEFKRCMRVFSHSPFKVRLILLSMLCDMVNNKPQQDKPSDK"
     gene            21160..22743
                     /gene="opgE"
                     /locus_tag="OQQ19_001453"
     CDS             21160..22743
                     /gene="opgE"
                     /locus_tag="OQQ19_001453"
                     /EC_number="2.7.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HCS1803127.1"
                     /translation="MNLTLKESLVTRSRVFSPWTAFYFLQSLLINLGLGYPFSLLYTA
                     AFTAILLLLWRTLPRVQKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEEST
                     EILTIFPWYSYLVGLFIFALGVIAIRRKKENEKARWNTFDSLCLVFSVATFFVAPVQN
                     LAWGGVFKLKDTGYPVFRFAKDVIVNNNEVIEEQERMAKLSGMKDTWTVTAVKPKYQT
                     YVVVIGESARRDALGAFGGHWDNTPFASSVNGLIFADYIAASGSTQKSLGLTLNRVVD
                     GKPQFQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVYFLKEGNFEADK
                     NTKDEALLDMTAQVLAQEHSQPQLIVLHLIGSHPQACDRTQGKYETFVQSKETSCYLY
                     TMTQTDDLLRKLYDQLRNSGSSFSLVYFSDHGLAFKERGKDVQYLAHDDKYQQNFQVP
                     FMVISSDDKAHRVIKARRSANDFLGFFSQWTGIKAKEINIKYPFISEKKAGPIYITNF
                     QLQKVDYNHLGTDIFDPKP"
     gene            complement(22792..23307)
                     /gene="ompX"
                     /locus_tag="OQQ19_001454"
     CDS             complement(22792..23307)
                     /gene="ompX"
                     /locus_tag="OQQ19_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein OmpX"
                     /protein_id="HCS1803128.1"
                     /translation="MKKIACLSALAAVLAFTAGTSVAATSTVTGGYAQSDAQGQMNKM
                     GGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASI
                     YGVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDV
                     GTWIAGVGYRF"
     gene            complement(23360..23425)
                     /locus_tag="OQQ19_001455"
     CDS             complement(23360..23425)
                     /locus_tag="OQQ19_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803129.1"
                     /translation="METFCYMKWPVRHHKSRRVSH"
     gene            23660..24547
                     /gene="rhtA"
                     /locus_tag="OQQ19_001456"
     CDS             23660..24547
                     /gene="rhtA"
                     /locus_tag="OQQ19_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/homoserine exporter RhtA"
                     /protein_id="HCS1803130.1"
                     /translation="MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVGAPGVT
                     ALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVA
                     LEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACW
                     AIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVAILS
                     TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAAS
                     MGSTLTVRKESKIKELDIN"
     gene            24846..25349
                     /gene="dps"
                     /locus_tag="OQQ19_001457"
                     /gene_synonym="pexB"
     CDS             24846..25349
                     /gene="dps"
                     /locus_tag="OQQ19_001457"
                     /gene_synonym="pexB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001730644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein Dps"
                     /protein_id="HCS1803131.1"
                     /translation="MSTAKLVKSKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLS
                     LITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKT
                     PLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLW
                     FIESNIE"
     gene            25753..26499
                     /gene="glnH"
                     /locus_tag="OQQ19_001458"
     CDS             25753..26499
                     /gene="glnH"
                     /locus_tag="OQQ19_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter substrate-binding
                     protein GlnH"
                     /protein_id="HCS1803132.1"
                     /translation="MKSVLKVSLAALTLVFAVSSHAADKKLVVATDTAFVPFEFKQGD
                     KYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAID
                     FSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPN
                     IDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDEL
                     RDKVNGALKTLRENGTYNEIYKKWFGTEPK"
     gene            26638..27297
                     /gene="glnP"
                     /locus_tag="OQQ19_001459"
     CDS             26638..27297
                     /gene="glnP"
                     /locus_tag="OQQ19_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015367581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter permease GlnP"
                     /protein_id="HCS1803133.1"
                     /translation="MQFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFAR
                     TFGGWIANHVALVFIEVIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSG
                     AYIAEITRGAVLSIHKGFREAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIK
                     DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKI
                     L"
     gene            27294..28016
                     /gene="glnQ"
                     /locus_tag="OQQ19_001460"
     CDS             27294..28016
                     /gene="glnQ"
                     /locus_tag="OQQ19_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000569103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter ATP-binding protein
                     GlnQ"
                     /protein_id="HCS1803134.1"
                     /translation="MIEFKNVSKHFGPTQVLHNIDLNIAQGEVVVIIGPSGSGKSTLL
                     RCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP
                     LRVRGANKEEAEKLARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLF
                     DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDG
                     NPQVLIKNPPSQRLQEFLQHVS"
BASE COUNT         6978 a         7539 c         6973 g         6734 t
ORIGIN      
        1 atgtctttgc aatatactcc gtatcgacag aatcaataat attataatta ccttcgctat
       61 tataaataat cagtttttca cgagcgagtt gattcttggc aatgatctca tgaccttgtt
      121 tcaaaaatag aacttcatca ttagcgctga tttgatcaag atactcgttc aaataccgcc
      181 agtttaaatc gacatgaatt ttatctaccg ctaacaaatc gtgatctttg ccgttgatac
      241 gtagcgtaaa agagatacat tttttacccg gacgatcaaa gcaattgtat gccggattcc
      301 agctgttgtt agagtcatct gaagccaccg accacggtcg tttcgatggg ttaaaatcgg
      361 caaaaataac ccgccctgac tcgtcgacaa gcggtccatt tacttgttcc tgatgataaa
      421 caacgatttt atcattcgcc ctccgtgaaa agagataata tttattatca tcaagtacca
      481 gtcccaccga gtctaaaaat ggcatcattt ccattttcag aatcacggcg cgttgaatct
      541 cctctgtatt ttttaataaa tacagtgagt cctttaatgt cagggccgaa cgttcaatat
      601 ctttaaagaa atagccaacg tttttctgaa taagttcaaa gcggctatcg gcacgtttta
      661 ccgcgcgttc cgataccagt tgatagttaa tgatgaaaaa aagaccaata aatgacagtg
      721 ctgccaataa aaataaaatt atcagcctta tctttatctt ttcgtataaa ctcagcatgt
      781 taatacattt aacaaaataa ctatctgaac gctgtgccgc tgcaaaaata gtcccttgct
      841 gcggcttttt aaccaaatta cccgattcta caaaatcagc agaaagttac aacacttgct
      901 tagggcaata atttcctgtg aggtgattac cctttcaagc aatattcaaa cgtaactatc
      961 ctttaatttt cggatccagc gcatcgcgta aaccatcgcc caacaaattg aacgccagta
     1021 cggtcagaaa aatagccagg gccggaaaaa cagcgacatg cggcgcgata accatatccg
     1081 ctcgtgcctc attgagcatt gctccccact ctggtgtcgg cggctgcgca ccgaggccga
     1141 gaaatgacag gctggcggca gagataatcg aggtgccaat gcgcatggtg aaaaacacca
     1201 cgatagacga gacggtccca ggcaagatat gacgcaataa aatggtcata tcgctggcac
     1261 caatactgcg tgctgactca ataaaggttt gctgtttcaa caccagcgtg ttgccgcgca
     1321 ccagtcgggc aaacgcgggg atggaaaaaa tggcgactgc gataatcacg ttagcaatgc
     1381 cgcttcccaa caccgcaaca acagcgatcg ccagtaaaat acccgggaag gcaaacagca
     1441 catcgcaaat gcgcatgatc agccgatccc accagccttc ataatatcca gccaacaagc
     1501 ccagcaacgt cccgatcgcc gcaccgataa acacggcaaa cacgcccgcc gccagcgaga
     1561 tttgcgcacc aaccaggaca cggctgaaaa tgtcgcgccc cagtgaatcg acgccaaacc
     1621 agtgctgcaa agaaggtccg ttattcagat tgtcataatc aaaataattt tcggcgtcat
     1681 agggagcgat ccagcgtgca aaaatggcca ccacaatcaa taaaataacg aataatgcgg
     1741 cggtcatcgc catatgctga cggcgaaatc gtcgccagaa ttcatgccac ggtgtacgca
     1801 cctggtcagg tttgaccagt ggcatggcgt ttaacaccgc ctgacgtcgc cagttaaata
     1861 gtcgcatcct tacttgtacc tgatagccgg gttaatggcg gcgtaaagca catccaccac
     1921 taagttgata agaataaatt ccagcgagaa aagcagaatt tccgcctgaa tcaccgggta
     1981 atcgcgcatt tctacggagt caacgagtaa gcgtccaagt ccgggccagt tgaaaacttt
     2041 ctccaccacg atagaaccac cgagcaaaaa gccaaactgt aagcccatca tggtcactac
     2101 cgggatcatc gcgttacgta gcccgtgttt gaggacaacc caggtttcgc tcaccccttt
     2161 cgccctcgcg gtacgcatat aatcttcgct taaaacatcg acaaacgacg cgcgggtaaa
     2221 gcgcgccatc acggctgcca ctgccgcgcc gagcgtcagg gaggataaaa tgtagtgctg
     2281 ccaactgtct gctcccacgg taggcagcca gcccagttca acggagaata cctgaattaa
     2341 aagcatcccc agcgcaaatg ccggaaacga gatccccgac accgcaatgg tcatactcaa
     2401 tcgatccggc caacgattac gccagacggc ggcgataatt cccgccgcca taccaaatat
     2461 caccgcccag accatactgg ttatggtcag ccacagcgtt ggcataaagc ggctggcaat
     2521 ctcatcggca accggacgac gcgacaccat cgacaggcca aaatccccct gcacagcatt
     2581 gctgatatag tgccagaact ggtgatacag cggctgatcc aaccccagct gctgacgcac
     2641 cagttctata acctgcgcat cagcttcggg cccggcaatc aatcgcgccg gatcgccggg
     2701 cagcatatgc acaaataaaa acaccagcac cgagacgata aacagcgtcg gaatcaaccc
     2761 cagtaagcgt ttgataacgt aattaagcat tccactccct gcgttgctta ttgcaaatcc
     2821 gcgtcttcaa agctgaagcc ggtgtctggc atgatccaaa aaccggtcag gtttttactg
     2881 tgtgccgaca ccagtttttc taccaccagc gggatccacg gcgactcttg ccagatgata
     2941 tcctgcgccg ccttatacaa gcgggtcttt tccgccggat cattagtttt cagtgcctga
     3001 gccaggaagt cgtccacctg tttattgctg taaaatgcgg tattaaacag cgtcggtggc
     3061 cagttttgcg aggcgaacag tggcgatagc gcccagtccg cttcgccggt tgaagccgac
     3121 cagccagtgt agaacatccg cacgccgctc tctttttgcc ctttaccttc aacttctgcc
     3181 gcccgctgtc cggcatccat cgcggtcacc tgggctttaa tcccgacctg cgctaactgc
     3241 tgctgggtaa attgcagcac tttctgcgcg gtgctgtggt tatgtgacga ccacagcgtg
     3301 gtactgaaac cgttgggata tcccgcctct ttcagtaatt cgcgcgcttt cactggatcg
     3361 taaggccacg gtttataact ttgcgcgtag gcgatacttg gcggtaccac accagtagct
     3421 ggcgttgcat agcccgcaaa ggcaactttc accagcgccg gacggttaat ggcgtaattc
     3481 agcgcctcac ggaccttcgg gttatcgaac ggcttttgcg tcacgttcat actgatataa
     3541 cgctgcataa ttgacggact ggccatcaac tcgatatttt tgtttttctc cagcagtgcg
     3601 gcctgctcgt agggaatggg gaaagcaaac tgcgcttcac cggtttgcag cattgccgcg
     3661 cgggtgttgt tatccgccac cggacgccag gttatgctgt ccagtttggg caatcctggc
     3721 tgccagtaac ccgcgaattt tttcaccttc acaaaatcgg tctgattcca ggtatccagt
     3781 tcatacggtc cggttcccac cggatgaaaa ccaatctcct tgccatattt ttccagcgct
     3841 gccggtgaaa tcatcgcggt cgccggatgg acaagaatat taataaacgc tgagaacggc
     3901 tgtttgaggg taatctttac cgttgtcgga tcgatcgcct ccgttttggc aatattctta
     3961 tacaggttat agcgtttaag atgattcgcc ggatcgctgg cccggtccag attcgctttc
     4021 accgccgcgg cgttgaaatc ggtgccatcc tggaatttaa ttccttcccg caatttcacg
     4081 gtgtaagtaa tgccgtcatc ggaaacggta taactctccg ccagcacgtt tttcagtttc
     4141 atctctttat ccagaccgaa cagcccctgg taaaacgatt tcgctacggc ctgagataac
     4201 gtgtcattcg cgtcatacgg atcgagcgtg gtgaaattcg atcctaccgc caccaccaca
     4261 tctttggcag cgaatgcaca agatgccatc aacgctgtcg caatgcccag cgccactaac
     4321 ccactacggt gtacagctct tgccatttta ttctccgcct gaatgttatc tacgcatgaa
     4381 tgcgtattct gattgtggtt gtgcgacgta atgccccggc ccgacgcatt gcaacgagac
     4441 ggctgccacc tcttcgccac gcagatgaat attgctggga agatcgtccg acagcagtac
     4501 acgctgcggt cgttgtcggg acggttcagc gaccggaact gccgccagta atttacgcgt
     4561 ataaggatgc tgcgggtttt cgaagaccgc gcgccgtgga ccaatttcaa caatttgccc
     4621 gagatacatc accgccacac gatgactaat ccgctctacc acggccatat cgtgggagat
     4681 aaacagatac gcaatgccga aatcacgctg gagatcgagc aacaagttga taatctgccc
     4741 gcgaatagaa acatccagcg ccgaaacggc ttcgtcggca atgatcactt ttggattcaa
     4801 tgccaacgcg cgagcaatgc agatgcgctg gcgctgaccg ccggaaaact catgcgggta
     4861 acgccaggca tgttcaggta acaggcccac gcgctccagc aaccacgcaa cgcgtgcagc
     4921 cgcgtcttta cctggcaata aaccgtgtac acacagcggt tcgataatcg aatcaccgat
     4981 ggtctgacgt gggtccagcg aagcgtaagg gtcctgaaaa ataaactgaa tatcccggcg
     5041 caatgcctga agtttgccag gtgacaaggt atcgattcgc tgaccgttaa agataatttc
     5101 gccgccctgc gattcgacca ggcgcagcaa cgcccgcccg gtagtggatt taccgctgcc
     5161 agactcgccc accagcgata gcgtttcgcc aggccagaga tcaaaactga ctttctcaac
     5221 ggcatgcact tcccgcgtta cgcgattcaa caaaccgctg cgcaaaggga aacgggtgac
     5281 aagattacgc actcgtaaaa caggttcgcc atccaccacc gttttctgct cgatgggggg
     5341 ttcctgtttc gctggatgtt caagcgatat caatgggaaa cgtcggggat aatctaaccc
     5401 tttcatcgca ccaagttgcg gaacagcagc taacagcgca cgggtgtaag gatgttgcgg
     5461 tgcatgaaaa atctgttcga cggtacccgt ttccaccgcc tcgccctgat acatcaccag
     5521 tacccgatcg gctatctctg ccaccacgcc catatcgtgc gtgataaaga taacgcccat
     5581 cgacatctct ttttgcaata ctttgattaa ttgcaggatc tgcgcctgaa tagtgacatc
     5641 cagcgcggtg gttggctcat cggcaatcag caccgccggg cggcatgaca gcgccatcgc
     5701 aatcatcact cgctggcgca tcccgccaga gagttgatgc ggataacgtg aaagaatggt
     5761 ttgtgcctca ggaatgcgta cctgatccag catccgcttc gcctcgacca tcgcttcttc
     5821 acgactggcg ttctgatgca gacgaattga ttcggcaatc tgttcaccca cagtaaatac
     5881 cgggttcagc gatgtcatcg gctcctgaaa tatcatcgcc atatccgcac cgcgaacatg
     5941 gcgcatttgt gcagcgctct gctcgctaag ttcaatcact tcgcgactgc gccgctgcaa
     6001 cagcatttta tcgcactgta ctaaaccgcc cgcctgttcc aacaggcgca tcaatgccaa
     6061 cgcagtcact gacttaccgg agccggattc gccaacaatt gccagcgtct caccgcgttg
     6121 cagactaaaa gagagattgc ggaccgcagc tattttctgc tggtcctgca taaaggcaat
     6181 attcagattt tcaaccgcca gcacattacc ggcatcaagt tcatcactgt gtggcaacgg
     6241 tgtccccttt ttcacggtag ataccggtgg ttggcgtatc gcctgcgtag ccccaggcgc
     6301 gatacattcc ttcggtgtta aacggtagcg cgacattccc ttcatggccg atagcgatta
     6361 agccaccgct accgccaagc gcagggagtt tttccattac tacccgctcg caggcttccg
     6421 cgagacttaa tccgccgtaa tccattaacg cggcgatgtc atatgccgcc agcgcgcgga
     6481 tgaagacttc gcccgtgccg gtacaagaaa ccgccacact ggcgttattg gcgtagcatc
     6541 cggcacccac taagggacta tcgccaactc gtccgggtaa tttattggtc attccgcctg
     6601 tggacgtggc tgccgccaaa ttgccgtcta aatccaacgc cacggccccc acggtgccca
     6661 ttttctgttt ttcatccagt ggcgcaccgc tatggtcgag gacggttgcc ccttccttgc
     6721 gcgctgccag tagttgttca taacgcaaag gcgtggagaa aatcgccggc gagacgcgct
     6781 ccatgccacg agcaaacgca aaattttctg ccccttcgcc aatcatcatc acatgcgggc
     6841 tttgctccat caccagccgg gcggcaagaa ccggattacg cagatgacta acgcccgcca
     6901 ccgcaccggc tttcagggtg ttaccatcca tcacacaggc gtccagttca tgggtttcat
     6961 cacgcgtaaa gacagcgcca attccggcgt taaacagtgg acactcttcc agcagacgca
     7021 ccgcttccgt caccacatcc agcgcacttt cgcccgcttc cagcattttc tgcccggttt
     7081 caacaatggc agacaacgcc tcaatgtagc gtaattcctg ttgcagactc atctgcgcgc
     7141 ggctaattgc acctgcgcca ccatgaattg caatgactgc tttgcccata gtattcgtcc
     7201 attaagggtg gctcgccact tttgctataa atatcagaat ttttatgaat tactcattca
     7261 atttttgaat atagaaagat ggatatggca tgtaaaggca ggagccaacg ctacgcccga
     7321 ggtggcatac agtctgtggc gtttttctga cataataggc aaattcgatt ttgcctccgc
     7381 aggagtgttt tcatggaatt taccaccgga ttgatgtcgc tcgacaccgc gcttaatgag
     7441 atgctttctc gcgtcacccc actgaccgcc caggaaacgc tgccactggt acagtgtttt
     7501 ggtcgtattc tggcgagcga tgtcgtttcg ccgcttgatg ttccggggtt tgataactcc
     7561 gcaatggacg gctacgcggt gcgtttagcc gatattgcct ccgggcaacc gctgcccgtt
     7621 gccggtaaat cctttgccgg tcagccgtat catggtgaat ggcctgcggg cacctgcatt
     7681 cgtattatga ccggtgcgcc ggtgccggaa ggctgcgaag cggtggtgat gcaggagcag
     7741 actgaacaaa cggacaatgg cgtgcgtttt actgctgaag tgcgtagcgg gcaaaatatt
     7801 cgccgtcgcg gtgaagatat ctctgcaggt gcggttgttt tcccggcggg aactcgcctg
     7861 actaccgcag agctgccagt aattgcttca ctggggattg ccgaagttcc ggtgattcgt
     7921 aaagtgcgtg tagcgctttt ttctaccggt gatgaactcc agttgcccgg tcagccgctg
     7981 ggtgacggcc aaatctacga caccaaccgt ctcgccgtac acctgatgtt agaacagctg
     8041 ggttgcgagg taatcaactt agggattatc cgcgacgatc cccatgccct gcgcgccgca
     8101 tttattgaag ccgacagcca ggcggatgta gtgatcagtt ccggcggtgt ttcagtgggt
     8161 gaagcggatt acaccaaaac gattcttgaa gagctggggg agatcgcctt ctggaagctg
     8221 gcgattaaac caggtaaacc gttcgcgttc ggtaaactca gcaatagctg gttctgcggc
     8281 ctgccgggca acccggtttc agcgacgctg accttctatc aactggtaca gcctttgctg
     8341 gcaaaactaa gcggcaacac cgccagcggc ctgcccgcgc gccagcgcgt acgcacagcg
     8401 tcccgcctga aaaaaacgcc aggacgtctt gatttccagc gcggcgtgct gcaacgcaac
     8461 gccgacggtg aacttgaagt gacgaccacc ggacatcagg gttcacatat atttagctcc
     8521 tttagtctcg gcaactgctt tatcgtgctg gaacgcgatc gcggcaatgt ggacgtgggc
     8581 gaatgggtgg aagtagaacc gtttaacgcg ttgttcggag gcctgtaatg gcggaactca
     8641 gcgatcagga gatgctgcgc tacaaccggc aaatcattct gcgcggtttt gattttgacg
     8701 gtcaggaggc gctaaaagat tctcgtgtgc tgatcgtcgg cctcggtgga ctcggctgcg
     8761 cagcttcgca gtatctggca agcgccggtg tcggcaacct gacgctgctc gacttcgaca
     8821 cggtttcgct ctcgaatctg caacgccaga cactgcacaa tgatgccacg gtcgggcaac
     8881 cgaaggtgga atccgcccgt gacgccctga cgcggatcaa cccacatatc gcgattacgc
     8941 cagtcaatgc actgctagat gacgcagaac ttgcagcatt gattgctgaa tacgatctgg
     9001 tgctcgactg tacggataac gttgcggtac gtaatcaact gaacgcaggc tgttttgccg
     9061 cgaaggtgcc gctggtttcc ggcgcggcaa ttcgtatgga agggcaaatc acggtcttca
     9121 cttatcagga cggcgaaccg tgctatcgct gccttagccg tttgtttggc gagaacgcgt
     9181 taacctgcgt agaagcaggc gtgatggcac cgttgatcgg cgtaattggt tcgttgcagg
     9241 caatggaagc gatcaaactg ctggcaggtt atggcaaacc ggccagcggg aaaatcgtca
     9301 tgtacgatgc gatgacctgt cagtttcgcg aaatgaaact gatgcgtaat ccggggtgtg
     9361 aggtgtgcgg gcagtaattg ccacctccag gccagataag acgcggcact ccgccacgtc
     9421 atcagcaatt tatgaggatg cagaacgtcc ggttaaatcg acgttctgcc aaacgctccc
     9481 agccagtcct gttcaaactt cgccacagcg gcatcaaccg ccggatagct aatcatctgt
     9541 tgtgccacat ccagtggcag cgtaattgat tcacatcctg ccagtaagca gtccagcgcc
     9601 tgacgcgggt ttttgaaact cgctgccagc actttcgcct gcggcgcatg cattttcaat
     9661 aactggtgta agtcggtcac agtctgaatg ccgctaccgc cctgagcatc aatacgatta
     9721 acgtaaggcg caacatattc cgcacctgcc agcgccgaca gcagcccttg tgctgcgcca
     9781 tataccgcgg ttcccagcgt tggaatccct tccgctttta acatcttaat agctgccagc
     9841 ccctcggcgg tcaccggaac tttcaccacg atatccgcaa taatagaacg caatttacgt
     9901 gcgtcattca ccatcccttc agcagtggta gccattacct gggcaaacag acgcccctga
     9961 ccgcccatcg cttcatgaag ttgcggaagc acaacatcca gcggtttttt acccgcggcg
    10021 ataatgcttg ggttagtggt cacacccgcc agcggaaaaa tacgtgacag cgccttcact
    10081 gcaacaacgt ctgaagtatc cagatacagt tccataacca tcctcaaaat gtactttttg
    10141 tctgaatgta gactatcacg ggaaaactct ctgaacagtt gacgcacatc aatccaactt
    10201 tcattcgaaa gtattttaat gtttgaacga aacagagagg caactatgat tttcaatatt
    10261 cagcgctact cgacccatga tggccccggt atccgcacgg tcgtatttct taaaggctgt
    10321 tcgctgggct gccgctggtg tcagaacccg gaaagccgcg cccgcacgca ggatctgctg
    10381 tatgacgcac gactgtgtct ggaaggctgc gagctgtgcg ctaaggcagc gccggaagtg
    10441 attgagcgcg cattgaatgg tttgcttatt catcgggaaa agttaacccc ggagcatctg
    10501 acggcgctaa ccgactgctg cccgacacag gcgttaaccg tgtgtgggga agtgaaaagc
    10561 gttgaggaga tcatggcgac cgttctgcgc gataaaccgt tttacgatcg cagcggcggc
    10621 ggcttaacgc tttcgggtgg tgaacccttt atgcagccgg aaatagcgac ggcgctactg
    10681 caagcctgcc acgaggcagg cattcatact gcggtagaaa cctgtctgca tgtgccgtgg
    10741 aaatatatca ccccttctct gccctatatc gatctgtttc ttgccgattt aaaacacatt
    10801 gccgacgcgc cgtttaaaca gtggaccgac ggtaacgccg ccaaggtgct ggataacctg
    10861 aaaaaactcg ccgcagcggg caaaaaaatc attatccgcg tgccgctgat tcagggcttt
    10921 aatgccgacg aaacctctgt aaaagccatt accgattttg ccgccgacga gctgcacgtt
    10981 ggcgaaattc attttctgcc ctaccacacg ctgggcatca acaaatatca cttacttaat
    11041 ctgtcctatg acgccccgga aaaaccgctt gatgcgccag acctgctcga ctttgcccag
    11101 cagtatgcct gccagaaagg gttaaccgcg accttacgag gataacaacc atgaccacac
    11161 tgaaactgga cacgctcagc gaccgcatta aagcgcacaa aaatgcgctg gtgcatattg
    11221 tgaaaccgcc ggtctgtacc gagcgcgcgc agcactatac cgagatgtat caacaacatc
    11281 tcgataagcc gatcccggta cgtcgcgcgc tggctctggc gcatcacctg gcgaatcgca
    11341 ccatctggat caagcacgat gagttgatca tcggcaacca ggcaagcgag gttcgcgctg
    11401 cgccgatctt cccggaatat accgtctcgt ggatcgaaaa agagattgat gatctggcag
    11461 atcgtcccgg tgctggtttt gcggtgagcg aagagaacaa acgcgttctg catgaagtgt
    11521 gcccgtggtg gcgcggtcag acggtacagg atcgctgcta cggcatgttt accgatgagc
    11581 aaaaaggtct gctggcgacc ggaatcatta aagcggaagg caatatgacc tccggcgatg
    11641 cgcacctggc ggtgaatttc ccgctgctgc tggaaaaagg tcttgatggt ctgcgcgaga
    11701 aagtagcgga acgtcgctcg cgcatcaatc tgacggtact ggaagatttg cacggcgaac
    11761 agttcctgaa agcgattgat atcgtgctgg tggcagtcag cgaacacatt gaacgttttg
    11821 cagccctggc gcgtgaaatg gccgcgaccg aaacccgcga aagccgtcgc gatgaactgc
    11881 tggcgatagc agaaaactgc gatcttatcg cccaccagcc gccgcagact ttctggcagg
    11941 cgctgcaact gtgttacttc atccagttga tattgcagat cgaatctaac ggtcactcgg
    12001 tatcgtttgg tcgtatggac cagtatctct acccgtacta tcgccgagac gttgaactca
    12061 accagacact ggatcgcgaa cacgccatcg aattgctgca tagctgctgg ctgaaactgc
    12121 tggaagtgaa caagatccgc tccggctcac actcaaaagc ctctgcggga agtcctctgt
    12181 atcagaacgt caccattggc ggacaaactc tggttgatgg tcaaccaatg gacgcggtga
    12241 atccactctc ttacgcgatc ctcgaatcct gcggtcgcct gcgttccact cagcctaacc
    12301 tcagcgtgcg ttaccatgca ggaatgagta atgatttcct cgacgcctgc gtacaggtga
    12361 tccgttgcgg cttcgggatg ccggcgttca acaacgacga aatcgtgatc ccggaattta
    12421 ttaaactcgg tattgaaccg caggacgctt acgactacgc agcgattggt tgtatcgaaa
    12481 ccgccgtcgg tggcaaatgg ggctatcgct gtaccggcat gagctttatc aacttcgccc
    12541 gcgtgatgct ggcggcgctg gaaggcgggc gtgatgccac aagcggcaac gtgttcctgc
    12601 cacaagaaaa agcgttgtcg gcaggcaact ttaacaattt cgatgaagta atggacgcgt
    12661 gggatacgca aatccgttat tacacgcgta aatcaatcga aatcgaatat gtcgtcgaca
    12721 ccatgctgga agagaacgtg cacgatattc tctgctcggc gctggtggat gactgtattg
    12781 agcgagcgaa aagtatcaag caaggcggcg cgaaatatga ctgggtttct ggcctgcagg
    12841 ttggcattgc caacctcggc aacagcctgg cggcagtgaa gaaactggta tttgaacagg
    12901 gcgcgattgg tcagcaacag ctggctgccg cactggcgga tgacttcgat ggcctgactc
    12961 atgagcaact gcgtcagcgg ctgattaacg gtgcgccgaa gtacggcaac gacgatgata
    13021 ctgtcgatac gctgctggct cgcgcttatc agacctatat cgacgaactg aaacagtacc
    13081 ataatccgcg ctacggtcgt ggtccggttg gcggcaacta ttacgcgggt acgtcatcta
    13141 tctccgctaa cgtaccgttt ggtgcgcaaa ctatggcaac gccggacggg cgtaaagccc
    13201 acaccccgct ggcagaaggc gccagtccgg cctctggtac tgaccatctc ggccctactg
    13261 cggtcattgg ctcggtgggt aaactgccta cggcagcgat tctcggcggc gtgttgctca
    13321 accagaaact gaatccggca acgctggaga acgaatctga caagcagaag ctgatgatcc
    13381 tgctgcgcac cttcttcgag gtgcataaag gctggcatat tcagtacaac atcgtttccc
    13441 gcgaaacgct gctggaggcg aaaaaacatc cggatcagta ccgcgatctg gtagtgcgtg
    13501 tcgcgggtta ttccgccttc ttcaccgcgc tctctccaga cgctcaggac gatatcatcg
    13561 ctcgtactga acatatgctg taatctcttc ggcccggctg cggcgtcgcc gggctaaatc
    13621 attcacatca tcaatttcat ccttactttc attcgaaata taatttgtgc tctgcgtcac
    13681 attgttatta cactgttacg gtttcatttt cgagccagga gcacacctat gagcgtaaaa
    13741 gttatcgtca cagacatgga cggtactttt cttaacgacg ccaaaatgta caaccaacca
    13801 cgttttatgg cgcaatatca ggaactgaaa aagcgcggca ttgagttcgt tgtcgccagc
    13861 ggtaatcagt attaccagct tatttcgttc tttcctgagc taaaggatga gatctctttt
    13921 gtcgcggaaa acggcgcact ggtttacgaa catggcaagc aactgttcca cggcgaactg
    13981 acccgacatg aatcgcggat tgttattggc gagttgctaa aagataagca actcaatttt
    14041 gtcgcctgcg gtctgcaaag tgcatatgtc agcgaaaatg cccccgaagc atttgtcgca
    14101 ctgatggcaa aacactacca tcgcctgaaa gctgtaaaag attatcagga gattgacgac
    14161 gtactgttca agttttcgct caacctgcca gatgaacaaa tcccgttagt gatcgacaaa
    14221 ctgcacatag cgttcgatgg cattatgaaa cccgtcacca gtggttttgg ctttatcgac
    14281 ctgattattc ccggtctaca taaagcaaac ggtatttcgc ggttactgaa acgctgggat
    14341 ctgtcaccgc aaaatgtggt agcgattggc gacagcggta acgatgcgga gatgctgaaa
    14401 atggcgcgtt attcctttgc gatgggcaat gctgcggaaa acattaaaca aatcgcccgt
    14461 tacgctaccg atgataataa tcatgaaggc gcgctgaatg tgattcaggc ggtgctggat
    14521 aacacatccc cttttaacag ctgacctctc taccggagcc gtgcgctccg gttttccctt
    14581 ctttttacat cctgtacatc acatcaaatc attaagcttg cattaactta tttataactt
    14641 atattgtcac atgcaaatca taatggtttc gaatgaaagt taatgagagg tggttatggc
    14701 ttctactttt accagcgaca cattgccagc cgatcacaaa gcagctatcc gtcagatgaa
    14761 gcacgcgctg cgggcgcagc ttggcgacgt ccagcagatc tttaatcagc taagcgatga
    14821 cattgccacg cgagtggctg aaatcaacgc actcaaagca cagggcgatg ccgtctggcc
    14881 ggtgctgtct tatgccgata tcaaagcagg tcatgttact gcagagcagc gcgaacagat
    14941 taaacgtcgc ggttgtgcgg tgataaaagg ccatttcccc cgcgaacaag cgctaggctg
    15001 ggatcagtcg atgctggact atctggaccg caaccgcttt gacgaggtct acaaaggccc
    15061 cggcgataat ttcttcggga cgctcagcac ttcacgtccc gagatttacc ccatctactg
    15121 gtcgcagacg caaatgcagg cccgccagag tgaagaaatg gcgaatgcgc agtcgtttct
    15181 caatcgtctg tggacatttg aaagtgatgg aaagcaatgg tttaacccgg atgtgagcgt
    15241 catctaccct gaccgtatcc gccgccgtcc gcccggaacg acctccaaag gtcttggagc
    15301 gcataccgac tccggggcgc tggaacgctg gctgcttcca gcgtatcagc gcgttttcgc
    15361 caacgtcttt aatggcaatc tggcgcaata tgatccctgg catgcggcac atcgtacgga
    15421 agttgaagag tacacggtgg acaacaccac caaatgttcc gtgtttcgga cattccaggg
    15481 ctggacagcg ctctctgata tgctgcctgg tcaggggttg ctgcacgttg tgcccattcc
    15541 tgaagccatg gcgtacgtac tgttacgtcc gctgcttgat gatgtgccgg aggatgaact
    15601 gtgcggcgta gcgcccggaa gagtgttgcc ggtatcagag caatggcatc cactgttaat
    15661 tgaggcgtta accagcattc caaaactcga ggccggagac tccgtctggt ggcactgcga
    15721 cgtcatccat tccgttgccc ccgttgaaaa tcaacagggt tggggcaacg tgatgtacat
    15781 tcctgcggca ccgatgtgcg agaaaaatct tgcctacgcg cacaaggtga aggccgcact
    15841 ggaaaaaggc gcatcgccgg gcgacttccc gcacgaggac tatgaaacaa actgggaagg
    15901 acgctttacg cttgccgacc tcaacattca cggtaagcga gcgttgggca tggatgtttg
    15961 agagttaatg gaagtgaatt gatgtgggat taagaaaatc gattcgacgt tactcagatt
    16021 gctgacaagt gcgctttctt aatgcctgat gcggcgttaa cgccttatct ggcctacaaa
    16081 gtcctgcaga ttcaatatat tacaggtact gcgtaggcct gataagcgta gcgcatcagg
    16141 ctattttgca tttgtcatca gccgccgtca ccccgacagt atcggggtga cggataatca
    16201 cttactcgat ccctttacta cgcaggtaat cttcgtaatt accgctaaag tcgatcacgc
    16261 gttccggggt gatttccaga atgcgggtcg ccagggagct tacgaactca cggtcgtgtg
    16321 aaacaaagat cagcgtgccc tgatacagtt ccagcgccat gttcagtgac tcgatggatt
    16381 ccatatccag gtggttggtc ggttcgtcca tgatcagaat gttcggcttc tgcatcatta
    16441 acttaccaaa cagcatccgc cctttttccc caccggaaag cactttagct ggctttttga
    16501 tgtcgtcctg gctgaacagc aaacgaccga gaatgctgcg taccgcctgc tcgtcatcgc
    16561 cttcctgctt ccactgactc atccattcga acacggtcag atcattttca aactcatatt
    16621 cgtggtcctg ggcgtagtaa ccaatgcgcg cgttttcaga ccattttacg gtgccgctgt
    16681 ccggttgcag atcgcccacc agcgttttca tcagcgttga tttaccgacg ccgttggtac
    16741 ccagtaccgc aagtttttca ccgacctcca gcagcaggtt gagattttta aacagtggac
    16801 cgttatcaaa ccctttggtc agaccttcca cttccagcgc gttacggaac agtttcttat
    16861 cctgttcaaa acggatgaac gggttctgac ggctggaggc tttcacctct tccagtttga
    16921 ttttatcaat ctggcgcgcg cgcgaagttg cctggcgaga tttcgaggcg ttggcgctaa
    16981 agcggctaac gaaagattgc aactcagcaa tctgcgcttt cttcttggcg ttatcggcca
    17041 gcagacgttc acgcgcctgg gtcgccgccg tcatgtactc atcgtagtta cccggataaa
    17101 cgcgcagctc gccgtaatcc agatccgcca tgtgggtaca gaccatgtta aggaagtgac
    17161 ggtcgtgcga gatgatgatc atggtgctgt cacgctcgtt cagcacctgt tccagccagc
    17221 gaatggtgtc gatgtcgagg ttgttggtcg gttcgtcgag caggagaata tccggatcag
    17281 caaacagcgc ctgcgccaga agcacacgca gcttccagcc aggagcaact tcactcatcg
    17341 ggccgtagtg ctgttccact ggaattccca cgccaagcaa caattcaccg gcgcgagctt
    17401 ccgcagagta accgtccatt tcgccgtatt taacttccag atcggccact ttatagccgt
    17461 cttcctcact catttccggc aaagcataga tgcggtcacg ctcctgcttc acttcccaca
    17521 actctttatg ccccatgatc accgtatcca gcacagtgaa ctcttcaaag gcaaactgat
    17581 cctgacgcag cttaccaatg cgctcgttgg gatcgaggga aacgttaccc aaagtcggct
    17641 ctaagtcgcc gccgaggatc ttcataaagg tggatttacc actaccgttc gcgccaatca
    17701 ggccgtaacg gttgccgccg ccaaatttga cggaaatgtt ttcaaacaac ggcttactgc
    17761 cgaactgcat ggtgacgtta ctggaaacta acacaggcgt atcctgaaaa gagatatgac
    17821 aaaccgcgca ttatgccata agtctgaaag aagatcctgc tcctcgctta aggtctacac
    17881 tcaagccaaa ggcaaaaaat gtgatttcgt acacatctga tttcactgtg agctggaatg
    17941 aacttataat gcgcttccaa tactctaata ttctcaaccc aatggcctgc caggcacaaa
    18001 atctcgctta acatgaatat gaaattgaaa acattattcg cagcggcctt cgctgttgtc
    18061 ggcttttgca gtaccgcctc tgcggtaact tatcctctgc caaccgacgg gagtcgcctg
    18121 gttggtcaga atcaggtgat caccattcct gaaggtaaca ctcagccgct ggagtatttt
    18181 gccgcggagt accagatggg gctttccaat atgatggaag cgaacccggg tgtggatacc
    18241 ttcctgccga aaggcggtac tgtactgaac attccgcagc agctgatcct gccggatacc
    18301 gttcatgaag gcatcgtcat taacagtgca gagatgcgtc tgtattacta tccgaaaggg
    18361 accaacaccg ttatcgtgct gccgatcggc attggtcagt taggcaaaga tacgcctatc
    18421 aactggacca ccaaagttga gcgtaagaaa gcaggcccga cctggacgcc gaccgcaaaa
    18481 atgcacgcag agtaccgcgc tgcgggcgaa ccgcttccgg ctgtcgttcc ggcaggtccg
    18541 gataacccga tgggtctgta tgcactctac atcggtcgcc tgtatgctat ccatggcacc
    18601 aacgccaact tcggtatcgg cctgcgtgta agtcatggtt gtgtgcgtct gcgtaacgaa
    18661 gacatcaaat tcctgttcga gaaagtaccg gtcggtaccc gcgtacagtt tattgatgag
    18721 ccggtaaaag cgaccaccga gccagacggc agccgttata ttgaagtcca taacccgctg
    18781 tctaccaccg aagcccagtt tgaaggtcag gaaattgtgc caattaccct gacgaagagc
    18841 gtgcagacag tgaccggtca gccagatgtt gaccaggttg ttcttgatga agcgattaaa
    18901 aaccgctccg ggatgccggt tcgtctgaat taatcttcaa aacttaaagc aaaaggcgga
    18961 ctcataatcc gcctttttta tttgccagac cctagttggc cgggagtata actaacaaaa
    19021 catatcccac caacgccgcc cacaacagca tcggtattga atagagatgg aaacgccacc
    19081 agatgcggcg atcgttcgcc atacgtagcg caatcaaact tgccagcgat ccgggtaata
    19141 acccaaagcc acctacgttt accgcccatg ccagtaataa agacggcggc acatagttca
    19201 gcaacaatat ggtactcggc acgttactga tcacctgcga taaaccgatt gccgttaacc
    19261 ataacccggg ttcagataga tgactcacgt tacccaacac gccttgcaac gctggaagct
    19321 gggtcagtaa atggacgtcg ataaacatcg ccataaacac cagcagcagc gtccagtcca
    19381 cactgagcac cacgcgacgt gccagcagcg caaagcctgc cgccacaatc accagtcccc
    19441 acagctcttg tttgaactcc agcgccgtta gaaagacgat atacagcccc agacaactcc
    19501 acaccagccg cggtttccac tccggtgttt gcacccccgt atggtattgc agcacctttc
    19561 cagggaaaca acaccagcac aggagcagga gcgtcagcat cattgcgcca gccagcggtg
    19621 ccatttgggc aataaatccg gcaaacgaaa gaccagaacg tccccagata agaatatttt
    19681 gcgggttgcc aattggcgtc agtagcgaac cagcattgac tgccagcgcc tcaaaaataa
    19741 tcagacgatt aaccgggatc tcacacagtc tttttagcgt gatagtcagc ggaacaacaa
    19801 taaacagcgc gacatcgttg gtcagaaagg tagaaagcag cgccgccgcc agcaccataa
    19861 acatcgccag ccgacgctcc gtagcaaagc ggcgcaccat tttgcgcccc agcacatcaa
    19921 aataaccgct taactccaca cctttggtca gcagcatcag gccgcttaag gtgatgatgg
    19981 tgtgccagtc gatagcagca ggccaggatt tcggtgcaaa gggcacgaaa aagcttaatc
    20041 cgataccaac aagaattaat aactgaaaaa aacgatcgcc ttgcagcgtg cgtaaaaaag
    20101 gcaggctcat ttggtaccgt gtttctgggt aaacaaacga aaagcgtcga gcgtctcttc
    20161 actaacatgg tgctccatgc cttccgcgtc gcgacgggcg atttccggac tgacgcccaa
    20221 caccaacaag aaattttcga ctatctgatg tcgctcgcgg ctttcctgcg ccagcttctc
    20281 tccttctgcc gttaaaaaca cgccacgcca ggggatcatt tcaatcagcc ccatggttgc
    20341 cagccgctta agcattttag ccaccgtcgg ttgcgaaact cccagacgag cagccatgtc
    20401 cacctgacga gcttccccca cttccctgat caagtcagaa atcagctcaa cgtaatcatc
    20461 aataagctcg cgccgatgcg cctctctgac ctggcggaac ccttcaacgt gctcttccac
    20521 gttcactaac tgcgtcactt tttttgctgt tggcgtacct gcgcgacgac tcattgtgct
    20581 tcctcattat ggtgacgcat acatagcgtt ctcatttcgt gcgcacattg taaaccagag
    20641 ttgcgaaggt acaaaaaatt aacgttttag caatagctat ataatatagc ctgtgctata
    20701 tctgtatgta atgcaatcat ccctcaagga tcgacgggat tagcaagtca ggaggtctta
    20761 tgaatgagtt caagaggtgt atgcgcgtgt ttagtcattc tccctttaaa gtacggttaa
    20821 tactgctctc tatgttgtgc gatatggtca acaacaaacc gcagcaagat aaaccttccg
    20881 ataaatagcg gcgtcgcggt acgccgcttc actcctgctt tcatgcaggc ataacgcgtt
    20941 ttggcctgaa aaaccccact ttttgtcgga tttgcaatcc ccttcgcaaa agatttgttc
    21001 gtcagtagtt gacctgaacg gcggctcgct ctatcttctt gcagccctgc gtatattgcg
    21061 gctcgcggat gcggacccct ttccactctt cacgcactct tgcaggtatt gacccttgac
    21121 gccagggtaa gcacatggcg tttgttacga tagtggcata tgaatttaac cctcaaagaa
    21181 tcgcttgtta cccgtagccg ggtatttagc ccgtggactg cgttctactt tttacagtcg
    21241 ctattaatta acctcggctt aggttacccc ttcagtttgc tctacaccgc tgcgtttacg
    21301 gctattttgc ttttgctatg gcgaacattg cctcgcgtac aaaaagttct ggtcggtgtc
    21361 agttcgctgg tggcggcttg ttatttccct tttgctcagg cctacggcgc gcctaatttc
    21421 aatacattgc tggcattgca ctccaccaat atggaagagt cgaccgaaat cctgacgatt
    21481 tttccgtggt acagctacct ggtcggctta tttatttttg cgctcggcgt aatagcaatc
    21541 aggcgaaaaa aagagaatga aaaagcgcgc tggaatacct tcgacagcct gtgtctggta
    21601 ttcagtgtgg cgacattttt tgttgctccc gtgcaaaacc tggcctgggg tggcgtattt
    21661 aaactgaaag atactggcta tccggtattt cgttttgcta aggatgtcat cgtcaataat
    21721 aacgaggtga ttgaagagca agaacggatg gcaaaacttt ccggaatgaa agatacctgg
    21781 acggtcactg ccgttaagcc gaagtatcag acctatgtgg tggtgatcgg tgaaagcgcg
    21841 cgtcgcgatg ccctcggtgc ctttggcggt cactgggaca ataccccgtt tgccagcagc
    21901 gttaacggtt tgatatttgc tgactacatt gccgccagtg gctccacgca gaaatcgctt
    21961 ggcttaacgc tcaatcgcgt agtcgatggc aaaccacagt ttcaggataa ctttgtcacc
    22021 ctggcaaatc gcgcgggctt ccagacctgg tggttttcca accagggcca aatcggcgaa
    22081 tacgatactg ctatcgccag catcgccaaa cgtgcagatg aagtgtactt cctgaaagaa
    22141 ggtaattttg aagcagataa aaacacgaaa gacgaagcgt tactggatat gaccgctcaa
    22201 gtgctggcgc aagagcactc gcaaccgcag ctgattgttc tgcatctgat aggctcgcat
    22261 ccgcaggcct gcgacaggac acaaggcaaa tacgaaacct ttgtgcaatc gaaagaaacg
    22321 tcgtgctatc tctataccat gacgcaaacg gacgatttac tgcgcaagct gtacgatcag
    22381 ttacgcaaca gcggcagcag cttctctctg gtttactttt ctgaccacgg tctggccttt
    22441 aaagagcgcg gcaaagacgt gcaatacctt gcccatgatg ataaatatca gcaaaatttc
    22501 caggtgcctt ttatggtcat ttccagcgac gataaagcgc atcgggtgat taaagcccgc
    22561 cgctcagcca atgacttctt aggctttttc tcgcagtgga cgggaattaa agcgaaggaa
    22621 ataaatatca aatacccgtt tatatctgag aagaaagccg ggccgatata catcaccaac
    22681 ttccagttac agaaggtgga ttacaaccat ctcggaaccg atattttcga cccgaaacct
    22741 taaaaacaaa aatccgcccc gagaggcgga ttttttatat caccaaagtg attagaagcg
    22801 gtaaccaaca ccggcaatcc aggtgcctac gtcaacgcta cgaatacggc tctgctcgta
    22861 agagaagtcc agagcaacgt tttccatcgg gttgaactgc agaccagcac cgtaggagaa
    22921 accgtagtcg ctggtgtcgt gtttgtaggt cgggtattca gtggtctgga atttaccata
    22981 acccacaccc actacaccgt agatgcttgc ccagtcgtta atgcggtaag ccggaccagc
    23041 agtgatgccg tagtactggt ttttgttgta gtcaccagag cttgcagtac gacttttctc
    23101 ggtgtaagtg aaagaaccga tcacacccag cgggctgttg tcttcttcat agcggtattt
    23161 caggttgaaa ccgcccattt tgttcatttg gccctgagcg tcgctctgtg cgtaaccgcc
    23221 agttacggta gaagtcgcag ctacggaagt acctgcggtg aaagccagaa ctgcggccag
    23281 tgctgaaaga catgcaattt ttttcataac cacctcaaat gtgattcaaa taagtcctaa
    23341 gttttaaata tatcaaaaat taatgggaaa ctcttcgcga tttgtgatgt ctaacgggcc
    23401 atttcatgta acagaacgtt tccatacacc gctatccatc taaatttaaa tcactttttc
    23461 agagaactgc gtaagtatta cgcatgtttt ccctgtcatt catccagatt attcctaatc
    23521 accagactaa tgattccatc aatcctggcg cattttagtc aaaacggggg aaaatttttt
    23581 caacaaatgc tcaaccagca ttgggtatat ccagtacact ccacgcttta cttaagtcta
    23641 gatatttgtg ggagaaagga tgcctggttc attacgtaaa atgccggtct ggttaccaat
    23701 agtcatattg ctcgttgcca tggcgtctat tcagggtgga gcctcgttag ctaagtcact
    23761 ttttcctctg gtgggcgcac cgggtgtcac tgcgctgcgt ctggcattag gaacgctgat
    23821 cctcatcgcg ttctttaagc catggcgact gcgctttgcc aaagagcaac ggttaccgct
    23881 gttgttttac ggcgtttcgc tgggtgggat gaattatctt ttttatcttt ctattcagac
    23941 agtaccgctg ggtattgcgg tggcgctgga gttcaccgga ccactggcgg tggcgctgtt
    24001 ctcttctcgt cgcccggtag atttcgtctg ggttgtgctg gcggttcttg gtctgtggtt
    24061 cctgctaccg ctggggcaag acgtttccca tgtcgattta accggctgtg cgctggcact
    24121 gggggccggg gcttgttggg ctatttacat tttaagtggg caacgcgcag gagcggaaca
    24181 tggccctgcg acggtggcaa ttggttcgtt gattgcagcg ttaattttcg tgccaattgg
    24241 agcgcttcag gctggtgaag cactctggca ctggtcggtt attccattgg gtctggctgt
    24301 cgctattctc tcgaccgctc tgccttattc gctggaaatg attgccctca cccgtttgcc
    24361 aacacggaca tttggtacgc tgatgagcat ggaaccggcg ctggctgccg tttccgggat
    24421 gattttcctc ggagaaacac tgacacccat acagctgctg gcgctcggcg ctatcatcgc
    24481 cgcttcaatg gggtctacgc tgacagtacg caaagagagc aaaataaaag aattagacat
    24541 taattaaatt tacatttctg catggttatg cataaccatg cagaatttct cgctactttt
    24601 cctctacacc gtctttatat atcgaattat gcaaaagcat atttattccg aaaattcctg
    24661 gcgagcagat aaataagaat tgttcttatc aatatatcta actcattgaa tctttattag
    24721 ttttgttttt cacgcttgtt accactatta gtgtgatagg aacagccaga atagcggaac
    24781 acatagccgg tgctatactt agtctcgtta attactggga cataacatca agaggatatg
    24841 aaattatgag taccgctaaa ttagttaaat caaaagcgac caatctgctt tatacccgca
    24901 acgatgtctc cgacagcgag aaaaaagcaa cagtagagtt gctgaatcgc caggttatcc
    24961 agtttattga tctttctttg attaccaaac aagcgcactg gaacatgcgc ggcgctaact
    25021 tcattgccgt acatgaaatg ctggatggct tccgcaccgc actgatcgat catctggata
    25081 ccatggcaga acgtgcagtg cagctgggcg gtgtagctct ggggaccact caagttatca
    25141 acagcaaaac cccgctgaaa agttacccgc tggacatcca caacgttcag gatcacctga
    25201 aagaactggc tgaccgttac gcaatcgtcg ctaatgacgt acgcaaagcg attggcgaag
    25261 cgaaagatga cgacaccgca gatatcctga ccgccgcgtc tcgcgacctg gataaattcc
    25321 tgtggtttat cgagtctaac atcgaataaa tccatcgctg atggtgcaga actttagtac
    25381 ccgataaaag cggcttcctg acaggaggcc gttttgtttt gcagcccacc tcaacgcact
    25441 tatttagtgc atccatctgc tatctccagc tgattaagta aattttttgt atccacatca
    25501 tcacacaatc gttacataaa gattgttttt tcatcaggtt ttacgctaaa taatcactgt
    25561 gttgagtgca caattttagc gcaccagatt ggtgccccag aatggtgcat cttcagggta
    25621 ttgccctata aatcgtgcat cacgtttttg ccgcatctct aaaaatcaat gagttgcaaa
    25681 actggcacga ttttttcata tatgtgaatg tcacgcaggg gatcgtcccg tggatagaaa
    25741 aaaggaaatg ctatgaagtc tgtattaaaa gtttcactgg ctgcactgac cctggttttt
    25801 gcggtttctt ctcatgccgc ggataaaaaa ttagttgtcg cgacggatac cgccttcgtt
    25861 ccgtttgaat ttaaacaggg cgataaatat gtgggctttg acgttgatct gtgggctgcc
    25921 atcgctaaag agctgaagct ggattacgaa ctgaagccga tggatttcag tgggatcatt
    25981 ccggcactgc aaaccaaaaa cgtcgatctg gcgctggcgg gcattaccat caccgacgag
    26041 cgtaaaaaag cgatcgattt ctctgacggc tactacaaaa gcggcctgtt agtgatggtg
    26101 aaagctaaca ataacgatgt gaaaagcgtg aaagatctcg acgggaaagt ggttgctgtg
    26161 aagagcggta ctggctccgt tgattacgcg aaagcaaaca tcaaaactaa agatctgcgt
    26221 cagttcccga acatcgataa cgcctatatg gaactgggca ccaaccgcgc agacgccgtt
    26281 ctgcacgata cgccaaacat tctgtacttc atcaaaaccg ccggtaacgg tcagttcaaa
    26341 gcggtaggtg actctctgga agcgcagcaa tacggtattg cgttcccgaa aggtagcgac
    26401 gagctgcgtg acaaagtcaa cggcgcgttg aaaaccctgc gcgagaacgg aacttacaac
    26461 gaaatctaca aaaaatggtt cggtactgaa ccgaaataat aacgctacac ctgtaaagcg
    26521 cactggcagt tccctctccc ctctggggag aggattaggg tgaggggcgc aaacccgctc
    26581 cggggccatt aattaccctg aatttgatta tttacaccac ggtaacagga acaacatatg
    26641 cagtttgact ggagtgccat ctggcctgcc attccgcttc tgattgaagg tgccaaaatg
    26701 accctgtgga tttcggtcct cggtctggct ggcggtctgg taatcggatt gctggcaggt
    26761 tttgcacgca ccttcggtgg ttggatagcc aaccacgtcg cgctggtctt tattgaagtg
    26821 atccgcggca cacctatcgt cgtccaggtg atgtttatct atttcgccct gccgatggcg
    26881 tttaacgact tacgcatcga cccatttact gcggcggtgg tcaccatcat gatcaactcc
    26941 ggcgcgtaca ttgcggaaat cacgcgtggt gcggtgctgt ctattcacaa aggttttcgt
    27001 gaagcaggac tggcgctcgg tctttcacgt tgggaaacca ttcgctacgt cattttaccg
    27061 ctggcactgc gtcgtatgct gccgccgctg ggtaaccagt ggatcatcag cattaaagac
    27121 acctcgctgt ttattgttat cggcgtggcg gaactgaccc gtcaggggca agaaattatt
    27181 gccggtaact tccgcgccct tgagatctgg agcgccgtgg cggtgttcta tctgattatt
    27241 accctggtgc tgagctttat tctgcgtcgt ctggaaagaa ggatgaaaat cctgtgattg
    27301 aatttaaaaa cgtctccaag cactttggcc caacccaggt gctgcacaat atcgatttga
    27361 acattgccca gggcgaagtc gtggtgatta tcgggccgtc cggttccggt aaatcgaccc
    27421 tgctgcgctg catcaacaaa ctggaagaaa tcacctccgg cgatctgatt gtcgatggcc
    27481 tgaaggttaa cgatccgaaa gttgacgagc gcctgattcg ccaggaagca ggtatggtgt
    27541 tccagcagtt ttacctcttc ccgcatctga cggcgctgga aaacgtcatg tttggtccgc
    27601 tacgcgtgcg tggcgcgaac aaagaagagg cggaaaaact ggcgcgtgag ctgctggcga
    27661 aagtcggtct ggcagaacgt gcacatcact acccttccga actttctggt ggtcaacagc
    27721 agcgtgtggc gattgcccgc gcgctggcgg tgaagccgaa aatgatgctg tttgatgaac
    27781 cgacttccgc tcttgacccg gaactgcgcc atgaagtgct gaaggttatg caggatctgg
    27841 ctgaagaagg gatgacgatg gtgatcgtga cccacgaaat cggttttgcc gagaaagtag
    27901 cttcgcggct gatctttatc gacaaaggcc ggattgcgga agatggcaat ccgcaggtgt
    27961 tgatcaagaa cccgccgagc cagcgcttgc aggaattttt gcagcacgtc tcttaataag
    28021 acacattgcc tgatgcgcta cgcttatcag gcctacagga tatctggcaa cttattaaaa
    28081 ttgcatgaac ttgtaggacg gataaggcgt tcacgccgca tccggcaaaa aagcccgcac
    28141 gttgtcagca atctgcttaa tatcccttcc tccctttcac ccgaaaggga ggcacaccag
    28201 attcctctca tttaaaatcg cccc
//
LOCUS       DAJVSY010000037        27850 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.037, whole genome shotgun sequence.
ACCESSION   DAJVSY010000037 DAJVSY010000000
VERSION     DAJVSY010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27850
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.037"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..527
                     /locus_tag="OQQ19_001461"
     CDS             <1..527
                     /locus_tag="OQQ19_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4049 domain-containing protein"
                     /protein_id="HCS1803135.1"
                     /translation="KYKIMANHHGIIFDEQRKRYIIGSITVSIDEMTNALDPVELAEI
                     INKKHHAVINGKKFKNSRAISCRSFNRYFSVSTDYRPKLEALLACSQMLGINQVVAHN
                     GNGGRECIGETGTVLGLNARDSKHAGRMFSMHNCQINPGAGPEITTPWKSYQHEKNRN
                     GLMPLIRRRTMLQL"
     gene            893..1960
                     /locus_tag="OQQ19_001462"
     CDS             893..1960
                     /locus_tag="OQQ19_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HCS1803136.1"
                     /translation="MDKSKRHLAWWVVGALAVAAVVAWWLLRPAGVPEGFAVSNGRIE
                     ATEVDIASKIAGRIDTILVKEGQFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVA
                     AAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHMRSRSLAQRGAISAQQLDDDRAAA
                     ESARAALESAKAQVSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPR
                     DGRVQYRVAEPGEVLAAGGRVLNMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAP
                     DLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELLQQHLEYVKTGLPGV
                     AWVRVNEELPWPDDLVVRLPQ"
     gene            1957..4692
                     /gene="rbbA"
                     /locus_tag="OQQ19_001463"
     CDS             1957..4692
                     /gene="rbbA"
                     /locus_tag="OQQ19_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated ATPase/putative transporter
                     RbbA"
                     /protein_id="HCS1803137.1"
                     /translation="MTHLELVPVPPVAQLAGVSQHYGKTVALNNITLDIPARCMVGLI
                     GPDGVGKSSLLSLISGARVIEQGNVMVLGGDMRDPKHRRDVCPRIAWMPQGLGKNLYH
                     TLSVYENVDFFARLFGHDKAEREVRINELLTSTGLAPFRDRPAGKLSGGMKQKLGLCC
                     ALIHDPELLILDEPTTGVDPLSRAQFWDLIDSIRQRQSNMSVLVATAYMEEAERFDWL
                     VAMNAGEVLATGSAEELRQQTQSATLEEAFINLLPQAQRQAHQAVVIPPYQPENAEIA
                     IEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAW
                     LFGQPVDPKDIDTRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPEAEIPARVAEMS
                     ERFKLNDVEDVLPESLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLM
                     VDLSRQDKVTIFISTHFMNEAERCDRISLMHAGKVLASGTPQELVEKRGAASLEEAFI
                     AYLQEAAGQSNEAEAPPVVHDTTHAPRQGFSLRRLFSYSRREALELRRDPVRSTLALM
                     GTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQAWTLNLSGSRYFIEQPPLTSYDEL
                     DRRMSAGDITVAIEIPPNFGRDIARGTPVELGVWIDGAMPSRAETVKGYVQAMHQSWL
                     QDVASRQSTPASQSGLMNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSTLSVVR
                     EKELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNFFLLCGLSVFVFGVPHKGSFLTL
                     TLAALLYIIIATGMGLLISTFMKSQIAAIFGTAIITLIPATQFSGMIDPVASLEGPGR
                     WIGEVYPTSHFLTIARGTFSKALDLTDMWQLFIPLLIAIPLVMGLSILLLKKQEG"
     gene            4692..5816
                     /locus_tag="OQQ19_001464"
     CDS             4692..5816
                     /locus_tag="OQQ19_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709253.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1803138.1"
                     /translation="MRHLRNIFNLGIKELRSLLGDKAMLTLIVFSFTVSVYSSATVTP
                     GSLNLAPIAIADMDQSQLSNRIVNSFYRPWFLPPEMITADEMDAGLDAGRYTFAINIP
                     PNFQRDVLAGRQPDIQVNVDATRMSQAFTGNGYIQNIINGEVNSFVARYRDNSEPLVS
                     LETRMRFNPNLDPAWFGGVMAIINNITMLAIVLTGSALIREREHGTVEHLLVMPITPF
                     EIMMAKIWSMGLVVLVVSGLSLVLMVKGVLGVPIEGSIPLFMLGVALSLFATTSIGIF
                     MGTIARSMPQLGLLVILVLLPLQMLSGGSTPRESMPQMVQDIMLTMPTTHFVSLAQAI
                     LYRGAGFEIVWPQFLTLMAIGGAFFTIALLRFRKTIGTMA"
     gene            5889..6164
                     /locus_tag="OQQ19_001465"
     CDS             5889..6164
                     /locus_tag="OQQ19_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HCS1803139.1"
                     /translation="MRTKVQALRKKQKNTLDQIFKTPVPQGIKWSDIESLVKALGGEI
                     KEGRGSRCKFILNMSVACFHRPHPSPDTDKGAVESVRDWLLSIGVKP"
     gene            6161..6520
                     /locus_tag="OQQ19_001466"
     CDS             6161..6520
                     /locus_tag="OQQ19_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HCS1803140.1"
                     /translation="MIKLKTPNSMEIAGQPAVITYVPELNAFRGKFLGLSGYCDFVSD
                     SIQGLQKEGELSLLEYLEDCKAAGIEPYARTEKIKTFTLRYPESLSERLNNAAAQQQV
                     SVNTYIIETLNERLNHL"
     gene            complement(6640..7041)
                     /gene="nikR"
                     /locus_tag="OQQ19_001467"
     CDS             complement(6640..7041)
                     /gene="nikR"
                     /locus_tag="OQQ19_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-responsive transcriptional regulator
                     NikR"
                     /protein_id="HCS1803141.1"
                     /translation="MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEA
                     TQQHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLK
                     GDMGDVQHFADDVIAQRGVRHGHLQCLPKED"
     gene            complement(7047..7853)
                     /gene="nikE"
                     /locus_tag="OQQ19_001468"
     CDS             complement(7047..7853)
                     /gene="nikE"
                     /locus_tag="OQQ19_001468"
                     /EC_number="7.2.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel import ATP-binding protein NikE"
                     /protein_id="HCS1803142.1"
                     /translation="MTLLNVSGLSHHYAHGGFSGKHQHQAVLNNVSLTLKSGETVALL
                     GRSGCGKSTLARLLVGLESPSQGNISWRGESLAKLNRAQRKAFRRDIQMVFQDSISAV
                     NPRKTVREILREPMRHLLSLKKSEQLARASEMLKAVDLDDSVLDKRPPQLSGGQLQRV
                     CLARALAVEPKLLILDETVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERF
                     CQRVMVMDNGQIVETQAVGDKLTFSSDAGRVLQNAVLPAFPVRRRATEKV"
     gene            complement(7850..8614)
                     /gene="nikD"
                     /locus_tag="OQQ19_001469"
     CDS             complement(7850..8614)
                     /gene="nikD"
                     /locus_tag="OQQ19_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel import ATP-binding protein NikD"
                     /protein_id="HCS1803143.1"
                     /translation="MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSL
                     TCAATLGILPAGVRQTAGEILADGKAVYPCALRGIKIATIMQNPRSAFNPLHTMHTHA
                     RETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
                     FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGK
                     IVEQGDVETLFNAPKHTVTRSLVSAHLALYGMELAS"
     gene            complement(8614..9447)
                     /gene="nikC"
                     /locus_tag="OQQ19_001470"
     CDS             complement(8614..9447)
                     /gene="nikC"
                     /locus_tag="OQQ19_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter permease subunit NikC"
                     /protein_id="HCS1803144.1"
                     /translation="MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSH
                     LLSPDAQHWLGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGR
                     VDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISL
                     RQREFVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVSGMSFLGLGVT
                     APTAEWGVMINDARQYIWTQPLQMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHA
                     H"
     gene            complement(9444..10388)
                     /gene="nikB"
                     /locus_tag="OQQ19_001471"
     CDS             complement(9444..10388)
                     /gene="nikB"
                     /locus_tag="OQQ19_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter permease subunit NikB"
                     /protein_id="HCS1803145.1"
                     /translation="MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNL
                     PPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATL
                     ELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV
                     YLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLND
                     KQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPV
                     IQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEGAHA"
     gene            complement(10388..11962)
                     /gene="nikA"
                     /locus_tag="OQQ19_001472"
     CDS             complement(10388..11962)
                     /gene="nikA"
                     /locus_tag="OQQ19_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter, nickel/metallophore
                     periplasmic binding protein"
                     /protein_id="HCS1803146.1"
                     /translation="MLSTLRRTLFALLACASFIVHAAAPDEITTAWPVNVGPLNPHLY
                     TPNQMFAQSMVYEPLVKYQADGSVIPWLAKSWTHSEDGKTWTFTLRDDVKLSNGEPFD
                     AEAAAENFRAVLDNRQRHAWLELANQIVDVKALSKTELQITLKSAYYPFLQELALPRP
                     FRFIAPSQFKNHETMNGIKAPIGTGPWILQESKLNQYDVFVRNENYWGEKPAIKKITF
                     NVIPDPTTRAVAFETGDIDLLYGNEGLLPLDTFARFSQNPAYHTQLSQPIETVMLALN
                     TAKTPTNELAVREALNYAVNKKSLIDNALYGTQQVADTLFAPSVPYANLGLKPRQYDP
                     QKAKALLEKAGWTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQIGAD
                     VSLIGEEESSIYARQRDGRFGMIFHRTWGAPYDPHAFLSSMRVPSHADFQAQQGLADK
                     PLIDKEIGEVLATHDETQRQALYRDILTRLHDEAVYLPISYISMMVVSKPELGNIPYA
                     PIATEIPFEQIKPVKP"
     gene            complement(12073..12660)
                     /gene="acpT"
                     /locus_tag="OQQ19_001473"
     CDS             complement(12073..12660)
                     /gene="acpT"
                     /locus_tag="OQQ19_001473"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase AcpT"
                     /protein_id="HCS1803147.1"
                     /translation="MYRIVLGKVSTLSAAPLPPGLREQAPQGPRRERWLAGRALLSHT
                     LSPLPEIIYGEQGKPAFAPETPLWFNLSHSGDDIALLLSDEGEVGCDIEVIRPRANWR
                     WLANAVFSLGEHAEMDAVHPDQQLEMFWRIWTRKEAIVKQRGGSAWQIVSVDSTYHSS
                     LSVSHCQLENLSLAICTPTPFTLTADSVQWIDSVN"
     gene            complement(12715..13751)
                     /locus_tag="OQQ19_001474"
                     /pseudo
     CDS             complement(12715..13751)
                     /locus_tag="OQQ19_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709244.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
     gene            13883..15100
                     /locus_tag="OQQ19_001475"
     CDS             13883..15100
                     /locus_tag="OQQ19_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417930.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1803148.1"
                     /translation="MPEPVAEPALNGLRLNLRIVSIVMFNFASYLTIGLPLAVLPGYV
                     HDVMGFSAFWAGLVISLQYFATLLSRPHAGRYADLLGPKKIVVFGLCGCFLSGLGYLT
                     AGLTASLPVISLLLLCLGRVILGIGQSFAGTGSTLWGVGVVGSLHIGRVISWNGIVTY
                     GAMAMGAPLGVVFYHWGGLQALALIIMGVALVAILLAIPRPTVKASKGKPLPFRAVLG
                     RVWLYGMALALASAGFGVIATFITLFYDAKSWDGAAFALTLFSCAFVGTRLLFPNGIN
                     RIGGLNVAMICFSVEIIGLLLVGVATMPWMAKIGVLLAGAGFSLVFPALGVVAVKAVP
                     QQNQGAALATYTVFMDLSLGVTGPLAGLVMSWAGVPVIYLAAAGLVAIALLLTWRLKK
                     RPPEHVPEAASSS"
     gene            complement(15104..15661)
                     /gene="dcrB"
                     /locus_tag="OQQ19_001476"
     CDS             complement(15104..15661)
                     /gene="dcrB"
                     /locus_tag="OQQ19_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417929.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage sensitivity protein DcrB"
                     /protein_id="HCS1803149.1"
                     /translation="MRNLVKYVGIGLLVMGLAACDDKDTNATAQGSVAENNATGNPVN
                     LLDGKLSFSLPADMTDQSGKLGTQANNMHVWSDATGQKAVIVIMGDDPKEDLAVLAKR
                     LEDQQRSRDPQLQVVTNKAIELKGHKMQQLDSIISAKGQTAYSSVILGNVGNQLLTMQ
                     ITLPADDQQKAQTTAENIINTLVIQ"
     gene            complement(15734..16399)
                     /locus_tag="OQQ19_001477"
     CDS             complement(15734..16399)
                     /locus_tag="OQQ19_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HCS1803150.1"
                     /translation="MNVFSQTQRYKALFWLSLFHLLVITSSNYLVQLPVSILGFHTTW
                     GAFSFPFIFLATDLTVRIFGAPLARRIIFAVMIPALLISYVISSLFYMGSWQGFGALA
                     HFNLFVARIATASFMAYALGQILDVHVFNRLRQSRRWWLAPTASTLFGNVSDTLAFFF
                     IAFWRSPDAFMAEHWMEIALVDYCFKVLISIVFFLPMYGVLLNMLLKRLADKSEINAL
                     QAS"
     gene            16620..16865
                     /gene="tusA"
                     /locus_tag="OQQ19_001478"
     CDS             16620..16865
                     /gene="tusA"
                     /locus_tag="OQQ19_001478"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA"
                     /protein_id="HCS1803151.1"
                     /translation="MTDLFSSPDHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIIAD
                     DPATTRDIPGFCTFMEHELVAKETDGLPYRYLIRKGG"
     gene            complement(16967..19165)
                     /gene="zntA"
                     /locus_tag="OQQ19_001479"
     CDS             complement(16967..19165)
                     /gene="zntA"
                     /locus_tag="OQQ19_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase
                     ZntA"
                     /protein_id="HCS1803152.1"
                     /translation="MSTPDNHGKKAPQFAAFKPLTTVQNANDCCCDGACSSSPTLSEN
                     VSGTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVES
                     AVQKAGYSLRDEQAADEPQASRLKENLPLITLIVMMAISWGLEQFNHPFGQLAFIATT
                     LVGLYPIAHQALRLIKSGSYFAIETLMSVAAIGALFIGATAEAAMVLLLFLIGERLEG
                     WAASRARQGVSALMALKPETATRLRNGEREEVAINSLRPGDVIEVAAGGRLPADGKLL
                     SPFASFDESALTGESIPVERATGDKVPAGATSVDRLVTLEVLSEPGASAIDRILKLIE
                     EAEERRAPIERFIDRFSRIYTPAIMAVALLVTLVPPLLFAASWQEWIYKGLTLLLIGC
                     PCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTQVAFDKTGTLTVGKPRVTA
                     IHPATGISESELLTLAAAVEQSATHPLAQAIVREAQVAALAIPAAESQRALVGSGIEA
                     QVNGERVLICAAGKHPADAFAGLINELESAGQTVVLVVRNDDVLGIIALQDTLRADAA
                     TAISELNALGVKGVILTGDNPRAAAAIAGELGLEFKAGLLPEYKVKAVTELNQHAPLA
                     MVGDGINDAPAMKAAAIGIAMGSGTDVALETADAALTHNHLRGLVQMIELARATHANI
                     RQNITIALGLKGIFLVTTLLGMTGLWLAVLADTGATVLVTANALRLLRRR"
     gene            complement(19239..19865)
                     /locus_tag="OQQ19_001480"
     CDS             complement(19239..19865)
                     /locus_tag="OQQ19_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000964717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysoplasmalogenase"
                     /protein_id="HCS1803153.1"
                     /translation="MLWSFIAVCLSAWLSVDASYRGPTWQRWVFKPLTLLLLLLLAWQ
                     APMFDAISYLVLAGLCASLLGDALTLLPRQRLMYAIGAFFLSHLLYTIYFASQMTLSF
                     FWPLPLVLLVLGALLLAIIWTRLEEYRWPICTFIGMTLVMVWLAGELWFFRPTAPALS
                     AFVGASLLFISNFVWLGSHYRRRFRADNAIAAACYFAGHFLIVRSLYF"
     gene            20006..20365
                     /locus_tag="OQQ19_001481"
     CDS             20006..20365
                     /locus_tag="OQQ19_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2500 domain-containing protein"
                     /protein_id="HCS1803154.1"
                     /translation="MSKPPLFFIVIIGLIVVAASFRFMQQRREKADNDMAPLQQKLVV
                     VSNKREKPINDRRSRQQEVTPAGTSMRYEASFKPQSGGMEQTFRLDAQQYHALTVGDK
                     GTLSYKGTRFVSFVGEQ"
     gene            complement(20368..20637)
                     /locus_tag="OQQ19_001482"
     CDS             complement(20368..20637)
                     /locus_tag="OQQ19_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1145 family protein"
                     /protein_id="HCS1803155.1"
                     /translation="MLINIGRLLMLCVWGFLILNLVHPFPRPLNIFVNVALIFTVLMH
                     GMQLALLKSTLPKDGPQMTTAEKVRIFLFGVFELLVWQKKFKVKK"
     gene            complement(20627..21223)
                     /gene="rsmD"
                     /locus_tag="OQQ19_001483"
     CDS             complement(20627..21223)
                     /gene="rsmD"
                     /locus_tag="OQQ19_001483"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase"
                     /protein_id="HCS1803156.1"
                     /translation="MKKPNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLF
                     NWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGN
                     ARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEV
                     ENGLPTVPANWSLHREKVAGQVAYRLYQREAQGESDAD"
     gene            21373..22866
                     /gene="ftsY"
                     /locus_tag="OQQ19_001484"
     CDS             21373..22866
                     /gene="ftsY"
                     /locus_tag="OQQ19_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HCS1803157.1"
                     /translation="MAKEKKRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEP
                     AKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVAESEKAQPEAEVVAQPEPVVEETP
                     EPVAIEREELPLPEDVNAEEVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELEAQAL
                     AAEAAEEAVMVVPPVEEQPVEEIAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLF
                     RGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMG
                     EILAKVDEPLNVEGKTPFVILMVGVNGVGKTTTIGKLARQFELQGKSVMLAAGDTFRA
                     AAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSH
                     LMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDG
                     TAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED"
     gene            22869..23537
                     /gene="ftsE"
                     /locus_tag="OQQ19_001485"
     CDS             22869..23537
                     /gene="ftsE"
                     /locus_tag="OQQ19_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HCS1803158.1"
                     /translation="MIRFEHVSKAYLGGRQALQGVTFHMQPGEMAFLTGHSGAGKSTL
                     LKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI
                     PLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL
                     ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDINLISRRSYRMLTLSDGHLHGG
                     VGHE"
     gene            23530..24588
                     /gene="ftsX"
                     /locus_tag="OQQ19_001486"
     CDS             23530..24588
                     /gene="ftsX"
                     /locus_tag="OQQ19_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="HCS1803159.1"
                     /translation="MNKRDAINHIRQFGGRLDRFRKSVGGSGDGGRNAPKRAKSSPKP
                     VNRKTNVFNEQVRYAFHGALQDLKSKPFATFLTVMVIAISLTLPSVCYMVYKNVNQAA
                     TQYYPSPQITVYLQKTLDDDAAAGVVAQLQAEQGVEKVNYLSREDALGEFRNWSGFGG
                     ALDMLEENPLPAVAVVIPKLDFQGTESLNTLRDRITQINGIDEVRMDDSWFARLAALT
                     GLVGRVSAMIGVLMVAAVFLVIGNSVRLSIFARRDSINVQKLIGATDGFILRPFLYGG
                     ALLGFSGALLSLILSEILVLRLSSAVAEVAQVFGTNFDINGLSFDECLLLLLVCSMIG
                     WVAAWLATVQHLRHFTPE"
     gene            24833..25687
                     /gene="rpoH"
                     /locus_tag="OQQ19_001487"
     CDS             24833..25687
                     /gene="rpoH"
                     /locus_tag="OQQ19_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HCS1803160.1"
                     /translation="MTDKMQSLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYH
                     GDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLV
                     SFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARE
                     LGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWE
                     EQAANRLTDAMQGLDERSQDIIRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMK
                     KLRAAIEA"
     gene            25958..27061
                     /gene="livJ"
                     /locus_tag="OQQ19_001488"
     CDS             25958..27061
                     /gene="livJ"
                     /locus_tag="OQQ19_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched chain amino acid ABC transporter
                     substrate-binding protein LivJ"
                     /protein_id="HCS1803161.1"
                     /translation="MNIKGKALLAGCIALAFSNMALAEDIKVAVVGAMSGPVAQYGDQ
                     EFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCS
                     SSTQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVK
                     PQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENID
                     FVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYD
                     QVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQSDDPAEIAKYLKANSVDT
                     VMGPLTWDEKGDLKGFEFGVFDWHANGTATDAK"
     gene            complement(27260..27643)
                     /gene="panM"
                     /locus_tag="OQQ19_001489"
     CDS             complement(27260..27643)
                     /gene="panM"
                     /locus_tag="OQQ19_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase autocleavage activator
                     PanM"
                     /protein_id="HCS1803162.1"
                     /translation="MKLTIIRLENFSDQDRIDLQKIWPEYSPSSLQVDDNHRIYAARF
                     NERLLAAVRVTLSGTEGALDSLRVREVTRRRGVGQYLLEEVLRNNPGVSCWWMADAGV
                     EDRGVMTAFMQALGFTAQQGGWEKR"
BASE COUNT         6593 a         7227 c         7741 g         6289 t
ORIGIN      
        1 ccaaatacaa aataatggca aatcatcatg ggataatttt tgatgagcag cgaaaacgtt
       61 acattatagg atcgataaca gtctctattg atgaaatgac caatgctctc gatccggtcg
      121 aattagcgga aattattaat aaaaagcacc atgctgtaat taatggcaaa aagtttaaaa
      181 atagccgggc tatctcttgt cgatccttta atcgttattt ttctgtttcg acagattaca
      241 gacctaaact tgaagcacta ttagcatgct cacaaatgtt aggtataaat caagttgttg
      301 cacataacgg taatggtgga agagaatgta taggtgaaac ggggacagtt ttaggtctta
      361 acgcccgtga cagtaaacat gctggaagaa tgttcagcat gcataattgc caaattaacc
      421 ctggtgcagg gcctgagata accactccct ggaagtctta ccagcatgaa aaaaacagaa
      481 atggacttat gcctttgatt agaaggcgca caatgttaca gctctgaacc atagacaaca
      541 tgaatattaa tgttactatc tggttgagac tgttgataaa acgtaaaaag gaatgctctg
      601 ttcctgcaac tgaacaggcg tgaaacgcga tccaacagga tggataccgt tttgtcagcc
      661 agttttatag atcacactta tgagtatgcg tgtttcattt acggccagga atgctgatga
      721 tgacaacatt actacccgtt ttcactaagc cttccccgtt ggcgctcaat gctctgcgcg
      781 ctggtcgtat ttgtcgtttc cttcttatcc cggatggaag aatccgctga acgtcgttcg
      841 gcggcagttg taacacgcgt cgtttgctta cagggattat ggcgggccga ttatggataa
      901 gagtaagcgc catctggcgt ggtgggttgt cggggcactg gcggtggctg ccgtcgtggc
      961 gtggtggctg ttgcgcccgg cgggtgtgcc ggaaggcttt gctgtcagca atgggcgcat
     1021 tgaagcgacg gaagtggata tcgccagcaa aattgccggg cgtatcgaca ccattctggt
     1081 gaaagaaggc cagtttgttc gcgaaggtga agtgctggcg aagatggata ctcgtgtgtt
     1141 gcaggaacag cgactggaag ccatcgcgca aatcaaagag gcacaaagcg ccgttgccgc
     1201 cgcgcaggct ttgctggagc aacgacaaag cgaaactcgc gccgcgcagt cgctggttaa
     1261 tcaacgccag gcagaactgg actccgtagc aaaacgtcat atgcgttccc gttcactggc
     1321 ccaacgaggg gctatttctg cgcaacagct ggatgacgac cgcgccgccg ctgagagcgc
     1381 ccgagctgcg ctggaatcgg caaaagctca ggtttctgct tctaaagccg ctatagaggc
     1441 ggcacgtacc aatatcattc aggcgcaaac ccgcgtcgaa gcggcacaag ccactgaacg
     1501 gcgcattgcc gcagatatcg atgacagcga actgaaagcc ccgcgtgacg gacgcgtgca
     1561 gtatcgggtt gccgagccag gggaagtgct ggcggcaggc ggtcgggtgc tgaatatggt
     1621 cgatctcagc gacgtctata tgactttctt cctgccaacc gaacaggcgg gcacgctaaa
     1681 actgggcggt gaagcacggc tgatcctcga tgccgcgcca gatctgcgta ttccggcgac
     1741 catcagtttt gtcgccagcg tcgcccagtt cacgccaaaa accgtcgaaa ccagcgatga
     1801 acggctgaaa ctgatgttcc gcgtcaaagc gcgtatccca ccggaattac tccagcagca
     1861 tctggaatat gtcaaaacgg gcttgccggg cgtagcgtgg gtgcgggtga atgaagaact
     1921 tccgtggcct gacgacctgg tggtgaggtt gccgcaatga cgcatctgga actggttccc
     1981 gtcccgcctg tcgcgcaact ggcgggcgtg agccagcatt atggaaaaac cgttgcgctg
     2041 aacaatatca ctctcgatat tccggcccgc tgtatggtcg ggctgattgg cccggacggc
     2101 gtcgggaagt cgagtttgtt gtcgttgatt tccggtgctc gtgtcattga gcagggcaat
     2161 gtgatggtgc tgggcggcga tatgcgcgac ccgaagcatc gccgcgacgt ctgcccgcgc
     2221 atcgcctgga tgccgcaggg gctgggcaaa aacctctacc acaccttgtc ggtgtatgaa
     2281 aacgtcgatt ttttcgcccg cctgttcggt cacgacaaag cggagcggga agtgcgaatt
     2341 aatgagctgc tgaccagcac ggggttagca ccgtttcgcg atcgtccggc agggaaactc
     2401 tccggcggga tgaagcaaaa acttgggctg tgctgcgcgt taatccacga cccggaactg
     2461 ttgatccttg atgagccaac aacgggggtt gacccgctct cccgcgccca gttctgggat
     2521 ctgatcgaca gtattcgcca gcggcagagc aatatgagcg tgctggtcgc caccgcctat
     2581 atggaagagg ccgaacgctt cgactggctg gtagcgatga atgccggaga agtgctggca
     2641 accggcagcg ccgaagagct gcggcagcaa acgcaaagcg ccacgctgga agaagcattt
     2701 attaatctgt taccgcaagc gcaacgccag gcgcatcagg cggtagtgat cccaccgtat
     2761 caacctgaaa acgcagagat tgccatcgaa gcgcgcgatc tgaccatgcg ttttggttcc
     2821 ttcgttgccg ttgatcacgt caatttccgc attccacgcg gggagatttt tggattcctt
     2881 ggttcgaacg gctgcggtaa atccaccacc atgaaaatgc ttaccggact gctgcccgcc
     2941 agcgaaggtg aggcgtggct atttgggcaa ccggttgatc caaaagatat cgatacccgc
     3001 cgtcgtgtgg gctatatgtc gcaggcgttt tcgctctata acgaactcac cgtgcggcaa
     3061 aacctggagt tacatgcccg tttgtttcac atcccggaag cggaaattcc cgcgcgagtg
     3121 gctgaaatga gcgagcgttt taagctcaac gacgttgaag atgttctgcc ggagtcattg
     3181 ccgctcggca ttcgccagcg gctttcgctg gcggtggcgg tgattcatcg cccggagatg
     3241 ttaatcctcg atgagcctac ttctggtgtc gatccggtgg cgagggatat gttctggcag
     3301 ttgatggtcg atctctcgcg ccaggacaaa gtgactatct tcatctccac ccactttatg
     3361 aacgaagcgg aacgttgcga ccgcatctca ctgatgcacg ccggaaaagt gcttgccagc
     3421 ggtacaccgc aggaactggt tgagaaacgc ggagccgcca gtctggaaga ggcatttatc
     3481 gcctatttgc aggaagcggc agggcagagc aacgaagccg aagcgccgcc cgtggtacac
     3541 gacaccaccc acgcgccgcg tcagggattt agcctgcgcc gtctgtttag ctacagccgc
     3601 cgcgaagcgc tggaactgcg acgcgatcca gtacgttcga cgctggcgct gatgggaacg
     3661 gtgatcctga tgctgataat gggttacggc atcagtatgg atgtggaaaa cctgcgcttt
     3721 gcggtgctcg accgcgacca gaccgtcagt agccaggcgt ggacactcaa cctctccggt
     3781 tcccgttact ttatcgaaca gccgccgctc accagttatg acgagcttga tcgtcggatg
     3841 agtgcgggcg atatcacggt ggcgattgag atcccgccca atttcgggcg cgatatcgcg
     3901 cgtggtacgc ctgtggaact cggcgtctgg atcgacggag cgatgcccag tcgtgccgaa
     3961 acggtaaaag gttacgtgca ggcaatgcac cagagttggc ttcaggatgt ggcgagccga
     4021 caatcgacac ccgccagcca aagcgggctg atgaacattg agacgcgtta tcgctataac
     4081 ccggacgtaa aaagcctgcc agcaattgtt ccggcggtga tcccgcttct gctgatgatg
     4141 atcccgtcaa tgctaagcac ccttagcgtg gtgcgggaaa aagagcttgg gtcgattatc
     4201 aacctttacg tgacccccac cacgcgtagt gaatttttgc ttggtaaaca gttgccatac
     4261 atcgcgctgg ggatgctgaa ctttttcctg ctctgcggcc tgtcggtgtt tgtgtttggc
     4321 gtaccgcata aaggcagttt cctgacgctc accctggcgg cgctgctgta tatcatcatt
     4381 gccaccggaa tggggctgct gatctccacc tttatgaaaa gccagattgc cgccattttc
     4441 ggaacggcga ttatcacgtt gatcccggcg acacagtttt ccgggatgat cgatccggta
     4501 gcttcgctgg aagggcctgg acgttggatc ggcgaggttt acccgaccag tcattttctg
     4561 actatcgccc gcgggacgtt ctcgaaagcg ctggatctga ctgatatgtg gcaacttttt
     4621 atcccgttgc tgatagccat cccgctggtg atgggcttaa gtatcctgct gctgaaaaaa
     4681 caggagggat gatgcgccat ttacgcaata tttttaatct gggtatcaaa gagttgcgca
     4741 gtctgctcgg tgataaagcg atgctgacgc tgattgtctt ctcgtttacg gtgtcggtgt
     4801 attcgtcagc gaccgttacg ccaggatcgt tgaacctcgc gccgatcgcc attgccgata
     4861 tggatcaatc gcagttatcg aaccggatcg ttaacagctt ctatcgtccg tggtttttgc
     4921 caccggagat gatcaccgcc gatgagatgg atgccggact ggacgccgga cgctatacct
     4981 tcgcgataaa tattccgcct aattttcagc gtgatgtcct cgccggacgc cagccggata
     5041 ttcaggtgaa cgtcgatgcc acgcgcatga gccaggcatt taccggcaat gggtatatcc
     5101 agaatattat caacggtgaa gtgaacagct ttgtcgcgcg ctaccgtgat aacagcgaac
     5161 cgttggtatc gctggaaacc cggatgcgct ttaacccgaa ccttgatccc gcgtggtttg
     5221 gcggggtgat ggcgatcatc aacaacatta ccatgctggc gattgtattg accggatcgg
     5281 cgctgatccg cgagcgtgaa cacggcacgg tggaacactt actggtgatg ccgataacgc
     5341 cgtttgagat catgatggcg aagatctggt cgatggggct ggtggtgctg gtggtatcgg
     5401 gattatcgct ggtgctgatg gtgaaaggtg tactgggcgt accgattgaa ggctcgatcc
     5461 cgctgtttat gctgggcgtg gcgctcagtc tgtttgccac cacgtcaatc ggcattttta
     5521 tggggacgat agcgcgttca atgccgcaac tggggctgct ggtgattctg gtgctgctgc
     5581 cgctgcaaat gctttccggt ggatccacgc cgcgcgaaag tatgccgcag atggtgcagg
     5641 acattatgct gaccatgccg acgacacact ttgttagcct cgcgcaggcc attctctacc
     5701 ggggtgccgg attcgaaatc gtctggccgc agttcctgac gctgatggca attggcggcg
     5761 cgtttttcac cattgcgctg ctgcgattca ggaagacgat tgggacaatg gcgtaaggaa
     5821 gggaaacttg acttcatact gtgatgtcat actattgatg tcataaagtg aagtcataag
     5881 gacatgccat gagaaccaag gtacaggctt tacggaagaa acaaaaaaat acattggatc
     5941 aaatatttaa aactcctgtt cctcaaggga tcaagtggtc tgatatagag tcactggtta
     6001 aagcattagg cggagaaatt aaggaaggaa gaggttcgcg ttgtaagttc atactaaata
     6061 tgagcgttgc gtgtttccat cggcctcatc cgtcgccaga taccgataaa ggcgctgtag
     6121 aaagcgtgcg tgactggtta ctaagtatag gggtaaaacc atgatcaaac tgaagacgcc
     6181 aaactctatg gagattgccg ggcaaccagc tgttattacc tacgtgccag aactgaatgc
     6241 atttcgtggc aaattcctgg gcttgtcagg ttattgtgat tttgtctctg acagcattca
     6301 ggggctgcaa aaagaagggg aactttccct gctagagtat cttgaggatt gtaaagctgc
     6361 gggtattgag ccgtatgcgc gtacagaaaa gattaagacc tttacgttac gctatccaga
     6421 atcgctgagt gaacgcctta ataatgcggc tgcgcagcaa caagtctctg ttaataccta
     6481 tattattgaa acactgaatg agcgtttgaa tcatttataa attttagcgg cgtacattac
     6541 gcagaatatc tgcctttaca ggatctatct atgcaactga acttaatttt ataaattaag
     6601 ttcagttaat atcttttctt tcctcgtttc agaaataact caatcttcct tcggcaagca
     6661 ctgcaaatgc ccatgccgca cgccgcgctg ggcgataacg tcatcggcaa aatgctgcac
     6721 gtcgcccata tcacctttca gcacggcgat ttccagacag tcgtcgtgat tgatatgcac
     6781 atgcagcgtg gcgacggaga gatcgtggtg atggtgctgg gtggagacaa tgcggctggc
     6841 taagtcgcgt ttttcgtgtt catacacata ggagagcacc gcgaaacctt gcgtgccgtg
     6901 ctgctgagtg gcctcctggg ccagggcgct acgcagaata tcgcggatag cttcggaacg
     6961 gttgttataa ccacgacgct ggctcaggct gtccagcgtc tccagtaaat cgtcatcaag
     7021 cgtgatggtg actcgttgca tttgcgttaa accttttctg tggcgcgacg gcgcacgggg
     7081 aatgcgggta ataccgcgtt ttgtagcaca cgtccggcgt cagaggaaaa ggttaattta
     7141 tctcccaccg cctgggtttc gacgatttgt ccgttgtcca tcaccatcac ccgctggcaa
     7201 aagcgttcta caagacgtaa gtcgtgggtg atgaacaggc aggcggtgcc aaactgttgt
     7261 tgcagctttt tcagcaggcg aatgacgccc gcctgtaaca cgagatcaag gttagaaacg
     7321 gtttcatcca gaatcagcaa tttcggttcg accgccagcg cgcgtgccag gcagacgcgc
     7381 tggagctggc cgccgcttaa ctgcggtggg cgtttgtcga gaacgctgtc atcgagatcg
     7441 accgccttca gcatttcgct ggcgcgcgcc agttgttcgg attttttcag tgatagcagg
     7501 tggcgcatcg gttcacgcag gatctcgcgc acggttttgc gcggattcac ggcactgatg
     7561 gagtcctgaa acaccatctg aatatcacgg cggaaggctt tacgttgggc gcgattaagt
     7621 ttcgccagcg attcgccgcg ccagctaata ttcccttgtg agggagactc taagcctacc
     7681 agcagccgcg cgagggtgct ttttccgcag ccgctgcgtc ccagcagggc gacggtttcg
     7741 ccgcttttca gggtcaggga aacgttattc agcaccgcct gatgttgatg ttttccgcta
     7801 aatccaccgt gggcatagtg atgggaaagg ccgctgacgt taagtaaggt catgatgcca
     7861 gctccatacc gtagagggcg agatgagcgg aaaccaggct gcgcgtcacc gtatgtttgg
     7921 gggcgttaaa cagcgtttct acatcgccct gttcgacaat tttaccttgt gacatcaccg
     7981 ccacgtcatc cgccagacgc gccacaacgc ccatatcatg ggtgaccagc agcattcccg
     8041 gcgcttgttt ttgcataatg ctttccagca gatcgaggat gcgcgcctgt gctaccacgt
     8101 cgaggtcggt ggtcggttca tcggcgatga taaacggtga ttcacacagc accgccatcg
     8161 caatcatcat gcgctgcaac atgccgccgc tcatctcgaa cgggtacagc ttcagcacgc
     8221 gcgcggcgtt ttccagcccc accgcttcta tggcagcggt aagcgtagcg tcatcggcgg
     8281 gtttccctaa cgccaggcag gtttcccgcg cgtgggtgtg catggtgtgt agcggattaa
     8341 aggcgctgcg cgggttctgc atgatggtgg caattttgat gccgcgcagg gcgcagggat
     8401 aaaccgcttt gccatcggct aaaatttccc ccgccgtctg gcgaacgcca gcgggcaaaa
     8461 tgcccagcgt cgcggcgcag gttaatgatt tcccgctgcc gctaccgccg actaacgcca
     8521 gcacgcgccc gcgttgcagg gttaacgata caccgtgtac cagcggctgc gcggcctgta
     8581 gcgcgatatt acgtagttca atctgttgcg gcattagtgt gcgtgctccg tcaccagatg
     8641 agggtccaga tgatcgcgca gtgcgtcacc caccaggtta aaggccatca cgctgataaa
     8701 cagcgccagc cccggccaga acatttgcag cggctgggtc cagatatact ggcgcgcgtc
     8761 gttaatcatc acgccccatt cggcggtcgg cgcggtcaca ccgaggccaa ggaaagacat
     8821 ccccgagacg tgcagcatca tatggccgat atccagcgtt gccagcacca gcagcgaagg
     8881 gatcaccgcg cctgccagat gatcgacaaa cactcgcaca tggcccgcac cggaaagccg
     8941 tgacgccagc acaaactcgc gttggcgtag tgaaatcacc aggctgcgca ccatgcgtgc
     9001 ataccacgcc cagtgcgaca gggcgatggc gataattacg ttggtcagcc cggtgccgag
     9061 cacgccaacc ataaagaacg acagaatcga ggtcgggaag gtcataaaca tatcggcgac
     9121 gcgcatggtg gcctgatcaa cgcgcccgcc aatcaacccg gcgctgccgc caataaccag
     9181 ccctaatgtc agcaccagca gcaggcaggc cattaccgaa ccgagcgaca cgcgggtcgc
     9241 tgccatcagc cgcgagaaaa tatcgcgacc taagtgatcg gtgcccagcc agtgctgcgc
     9301 atccggcgaa agcaggtgcg acggcaaatc aatcgcctgg gggtcatacg gcagccacca
     9361 ctggctggtg agcgcaatca gcgccagcag ggcgataatg atcagcgcca ggcgtaccga
     9421 ccagcgggaa gagaggaaaa agttcacgcg tgcgctcctt catgacgacg aatgcgcggg
     9481 tccagcgcgg cgttgagcaa atcgacaatc aaattacaga ccacaaaaac caccaccatc
     9541 atcagcgtaa agcactgaat caccggatag tcacggttaa aaatcgccga caccgcatag
     9601 cgcccgacgc caggccaggc aaagatgttt tcgataatca tcgtcccgcc aatcaattcg
     9661 ccaatgtgca tccccacggc ggtgatcatc ggcagcgagg cattgcgcag aatatggcgg
     9721 cgttcggtct gtttgtcatt caggccgcgt agccgcgccc aggtgacgtg acgctgaccg
     9781 gcgacgtcca gcatactggc gcgcagcagt cgcgcgttaa tcgccagcga cataaaggcg
     9841 atggaaaccg caggcaaaat gatgtgctgc cagccgccgt agcccatcgc gggtagccat
     9901 tgcagataca ccgaaaacgc catcactagc aaaaatgcca gccagaagtt gggcatcgac
     9961 acgccaagaa acgcgataaa gcgcacggcg aaatccggca aacgatcgcg gtggcgcgcc
    10021 gcccagatac cgagcggtac ggaagtgagc agaattaata ccagcgccgc acctgcaagt
    10081 tccagcgtgg cgggcaggaa gttcagcata tcgtccagca ccgggcgttg gctggcgaat
    10141 gagataccaa agtcaagatg cagcgccttc cacaaccagg tgccgtactg gacgtacagc
    10201 ggctgatcca gtccgagcat ggtgcgggta gaggccagca tctccggcgt cggcggcagg
    10261 ttagacagac gcaaataatc gagcgccggg tcgccggtac cgaggcgcag catcagaaaa
    10321 atgatcaccg aggcggcgag caccatcggg atcagcagca gaaagcggcg taatacgtaa
    10381 cgcaacatta aggtttcacc ggtttaatct gttcgaacgg aatttcggtg gcgatcggcg
    10441 cgtaggggat gttacccagc tccggttttg ataccaccat cattgagatg taactgatag
    10501 gcagataaac cgcctcgtca tgcagacggg tcagaatgtc gcgatacagt gcctgacgtt
    10561 gcgtttcgtc atgggtcgcc agcacttcgc cgatctcttt atcaatcagc ggtttgtcgg
    10621 ctaatccttg ctgtgcctgg aagtcagcgt gcgacggtac gcgcattgaa ctcaggaagg
    10681 cgtgtggatc gtatggcgcg ccccaggtgc ggtggaaaat catgccaaaa cgaccgtcgc
    10741 gctgacgagc atagatactg ctctcttctt cgccaatcag cgagacatct gcgccaatct
    10801 ggcgcatatc agcctgaatg atttccgcca tcgatttgct taacgcatcg gtgccgatga
    10861 acgacagttc aatgcgcagc ggctgaccat ttttctcgcg gatgtctttg cccgcaggca
    10921 gcgtccaacc ggctttttcc agcaacgctt tcgctttctg cggatcgtac tggcgcggtt
    10981 tcaggccgag gttggcgtag ggcacagaag gggcaaacag ggtgtcggcg acctgctggg
    11041 tgccatacaa cgcgttatca atcagcgatt ttttgtttac cgcgtaatta agagcttcac
    11101 gtactgccag ctcattggtg ggggttttgg cggtattaag cgccagcatc acggtttcga
    11161 tcggctgtga cagttgggta tggtaagccg ggttctggct aaagcgggcg aaggtatcga
    11221 gcggtaataa cccttcgttt ccgtacagca ggtcgatatc gccagtttca aacgccaccg
    11281 cgcgggtagt cgggtccggg atgacgttaa aggtgatctt tttaatcgct ggcttttcgc
    11341 cccagtagtt ttcgttacgg acgaagacat cgtactgatt cagtttcgat tcctgcaaaa
    11401 tccacggtcc ggtgccaatc ggcgctttaa ttccgttcat ggtttcatgg tttttaaact
    11461 gcgagggagc gataaaacgg aaaggacggg gcagggccag ttcttgcagg aaaggatagt
    11521 aggcgctttt cagggtaatt tgcagctctg ttttactgag tgctttaaca tcaacaatct
    11581 ggtttgccag ctccagccag gcgtgacgtt gacggttatc gagcactgcg cggaagtttt
    11641 ctgccgccgc ctcggcatcg aacggttcac cgttggataa tttcacgtca tcacgcaggg
    11701 tgaaggtcca ggttttacca tcttctgaat gagtccagct ttttgccagc cacgggatca
    11761 ccgaaccgtc tgcctgatat ttcaccaatg gttcataaac catgctctgg gcgaacatct
    11821 ggttaggcgt gtaaaggtgc gggtttagtg gcccgacatt caccggccag gcggtagtga
    11881 tttcatctgg tgcagcggca tggacgataa aagacgcaca agccagcagc gcaaatagag
    11941 tgcggcggag tgtggagagc atgataaccc caatggatta aaatagatgg cggaaataag
    12001 tatgacgatt ttaagtattc gtcatactga ttacctgttc tggatcaata gatgggcagt
    12061 cgggtgggcg gatcagttaa ctgaatcgat ccattgcaca ctgtcggcgg tgagcgtaaa
    12121 gggggtgggg gtgcagatcg caaggcttaa attttctagc tgacaatggc tgactgacag
    12181 cgaggagtga taggtgctat ctacgctgac gatttgccag gcgctgccgc cacgctgttt
    12241 aacgatggct tctttgcgcg tccagatgcg ccagaacatt tccagttgct gatcaggatg
    12301 cacggcgtcc atttcagcgt gttccccgag gctgaacacg gcgttcgcca gccagcgcca
    12361 gttggcgcgc gggcgaatca cttcgatatc gcagccgact tcgccttcat cgctcaacag
    12421 cagagcgata tcgtcaccgc tatggcttaa gttgaaccat agcggcgttt ccggcgcgaa
    12481 tgcaggtttg ccttgttcgc catagatgat ctccggtagc ggggaaagcg tgtgcgaaag
    12541 caatgcacgc cccgccagcc agcgttcgcg tcgtggacct tgcggtgctt gctcgcgtaa
    12601 acccggtggc agtggagctg cgcttaaggt cgaaactttc cccagaacta tccgatacat
    12661 atcagggcca acgtttaatg gaaaatgaaa gtgcgtatcg tatcacttgt cgcctcatcc
    12721 cggtaaccga cttttcggtc tgcctagccc cagtaaaatc gccagtttgc taccgccttt
    12781 ggtggtttcc atccagattt tacacacgct ggttaatggc accgaaagta gcatccctac
    12841 cgggccgagc agccatcccc aaattaacaa tgaaagaaat accaccatgg tggacatccc
    12901 caggcgatgg cccatcatcc gtggtcgatg accatatgga ccactaaaaa caatgcgccg
    12961 accagaatac atgcgtaaac accattaaac agcagcacct gaatcattgg cggtacggcg
    13021 gaaattaccg cgccgatatt gggcacgtag ttgagcaaaa acgccagtac tgcccacatc
    13081 agcgcaaact gtacgcccat tagcgccagc cccagccaga cgatgacacc tgtccataaa
    13141 ctgagtagcg tctttaacgc cagataatgc gaaacgcctt taagtgcgcg gtgtaatcct
    13201 gcgatgtgaa tctgtgggtt attcagcgca aaacgcattt tgtaagggac gtggcgcact
    13261 tcaaacagca taaaaactac ggtcatcacc agcaaaagca cgctcgccat tgccccggaa
    13321 agcccgatca ttagcgctgt ggtgaaggta accacttttt ccgagtccat ccgctgcagc
    13381 attcgctccg gcgacatatg caaattaaga aaaggcaaca tctcctgcaa tttaaaaagt
    13441 ttgcgcgtca gctccttatt aaacttcggc agcatagaga taaattcgtt aaacgatgcc
    13501 gccagtacgc cgactagcgc ggttagtgcg atcagcatca ccaccactac aatcgtaatg
    13561 gtaacggggc gttgtactcc ccgacgaata aaccaggtaa cgagcgggtt gaggacgatg
    13621 gcaaaaaaca gcgccagtaa cagctgcaca atgatatctg ccgctgcgtg aatgcccgcg
    13681 aggatcacta ccagcgaggc caacttgagc agaatgtgca tgcccgtttt atcgggttga
    13741 ggggtttcca ttggggcttc cttgtgactt tttgtgttaa gtgtagcggg agtcacgtca
    13801 gcaatattct gattcttact gctgattttc acgtcagcac gtggtaaaaa tgaaacactg
    13861 ttgtaaaaat gtggtgatcc tcatgcccga acccgtagcc gaacccgcgc taaacggatt
    13921 gcgcctgaat ttgcgcattg tctccattgt catgtttaac ttcgccagct acctcaccat
    13981 cgggttgccg ctcgctgtat taccgggcta tgtccatgat gtgatgggct ttagcgcttt
    14041 ctgggcagga ttggttatca gcctgcaata tttcgccacc ttgctgagcc gtcctcatgc
    14101 cggacgttac gccgatttgc tgggccccaa aaagattgtc gtcttcggtt tatgcggctg
    14161 ctttttgagc ggtctgggat atctgacggc aggattaacc gccagtctgc ccgtcatcag
    14221 cctgttatta ctttgcctgg gacgcgtgat ccttgggatt gggcaaagtt ttgccggaac
    14281 gggatcgacc ctgtggggcg ttggcgtggt tggctcgctg catatcgggc gagtgatttc
    14341 gtggaacggc attgtcactt acggggcgat ggcgatgggt gcgccgttag gcgtcgtgtt
    14401 ttatcactgg ggcggcttgc aggcgttagc gttaatcatt atgggcgtgg cgctggtggc
    14461 cattttgttg gcgatcccgc gtccgacggt aaaagccagt aaaggcaaac cgctgccgtt
    14521 tcgcgcggtg cttgggcgcg tctggctgta cggtatggca ctggcactgg cttctgccgg
    14581 atttggcgtc atcgccacct ttatcacgct gttttatgac gctaaaagtt gggacggtgc
    14641 ggctttcgcg ctgacgctgt ttagctgtgc gtttgtcggt acgcgtttgt tattccctaa
    14701 cggcattaac cgtatcggcg gcttaaacgt agcgatgatt tgctttagcg ttgagataat
    14761 cggcctgcta ctggttggcg tggcgactat gccgtggatg gcgaaaatcg gcgtcttact
    14821 ggcgggggca gggttttcgc tggtgttccc ggcattaggt gtagtggcgg taaaagcggt
    14881 tccgcagcaa aatcaggggg cggcgctggc aacttacacc gtatttatgg atttatcgct
    14941 tggcgtgacc ggaccactgg ctgggctggt gatgagctgg gcgggcgtac cggtgattta
    15001 tctggcggcg gcgggactgg tcgcaatcgc gttattactg acgtggcgat taaaaaaacg
    15061 gcctccggaa cacgtccctg aggccgcctc atcatcttaa aacttactga ataaccagcg
    15121 tattaatgat gttttctgcg gtggtctgcg ctttttgctg atcgtcagcg ggcagcgtaa
    15181 tttgcatggt cagcagttga ttacccacgt tacccagaat aacggaagag tacgccgtct
    15241 ggcctttcgc ggagataata ctgtctaact gctgcatttt gtgacctttc agctcaatgg
    15301 ctttattggt taccacttgc agctgcggat cgcggctacg ttgctgatct tccagacgct
    15361 tcgccagcac cgccagatct tctttcggat catcgcccat gatgacgatg actgctttct
    15421 gcccggtggc gtcggaccag acatgcatgt tattggcctg cgttcccagc ttaccgctct
    15481 ggtcggtcat atccgctggc agcgagaaac ttaacttgcc atcaagcagg ttgacgggat
    15541 tcccggtagc gttattttcc gcgaccgaac cctgcgccgt agcgttagtg tctttatcat
    15601 cacaggccgc aagccccata accagcaggc caattccgac atatttaacc agattgcgca
    15661 ttgacttctt cctttcgata aacggccata acggctcatt catccatctt atcacaactc
    15721 tgataacgaa cctttaactc gcctgcaaag cgttgatttc ggatttatct gccagtcttt
    15781 tcaacagcat attgagtaat acgccataca ttggcaggaa gaaaacgata ctgattaaca
    15841 ctttgaaaca gtaatcgacc agcgcgattt ccatccagtg ttcagccata aaggcatccg
    15901 ggctacgcca gaaggcaatg aagaaaaagg ccagcgtgtc gctgacgtta ccgaacagtg
    15961 tggacgctgt cggtgccagc caccagcggc gactctgacg caggcggtta aaaacgtgca
    16021 cgtcgaggat ctgtcccagc gcgtaggcca tgaaactggc ggtggcgata cgggcgacaa
    16081 acaggttgaa gtgggcgagt gcgccgaatc cctgccagga acccatatag aatagcgacg
    16141 agatgacgta ggagatcagc aacgccggga tcatcaccgc aaagatgata cgacgggcca
    16201 gcggtgcgcc aaaaatacgc acggtcaggt cggtagcaag gaaaataaac gggaagctaa
    16261 acgcgcccca ggtggtatgg aaacccaaaa tggagacggg aagctgaacc agatagttac
    16321 tggaggtgat caccagcaga tgaaataacg ataaccagaa caacgcctta tagcgttgag
    16381 tttgcgagaa aacgttcata ttgtaccttt ttgattaacc attggggtga gggaacccaa
    16441 tacgtacgac acgtctgtta ccttaacata ataacgtgct tacccttttt tcgagccgcc
    16501 gcatgatact gctttacgtt gacaatgcaa tggttaattt tcacgcaatc gttaacctgg
    16561 tttgcttacg gactcacagg gcgtaaacta gcgccgtttt tttatgtgat gagaagaaaa
    16621 tgaccgatct cttttccagc cctgaccaca cactcgacgc acttggcctg cgctgcccgg
    16681 aacccgtaat gatggtgcgc aaaactgtgc gcaatatgca gcccggcgaa acgttgctga
    16741 ttatcgccga cgatccggcc actacccgcg atattcctgg gttttgtacc tttatggaac
    16801 acgaactggt tgcgaaagag acggatggac tgccttatcg ttatttgatt cgtaaaggcg
    16861 gttgatgggg gctgattggc ttcgatgccg ccttttcccc tcaccctaac cctctcccca
    16921 gaggggcgag gggaccgatc gcgctcaatg ttgcgatcgg tttgccttat ctcctgcgca
    16981 acaatcttaa cgcattcgct gtcaccagca ccgtcgcacc cgtatctgcc agcaccgcca
    17041 gccatagtcc ggtcatccct aaaagcgtgg tgacgaggaa gatccctttc agtcccagcg
    17101 caatggtgat gttctggcgg atattggcgt gagtggcgcg tgccagttca atcatttgca
    17161 ccaggccgcg caggtggtta tgggttaatg ctgcatcagc ggtttccagc gccacgtctg
    17221 tgccactgcc cattgcaatc ccaatggcgg cagctttcat cgctggcgcg tcgttaatac
    17281 cgtcaccgac catcgccagc ggcgcatgtt gattcagctc ggtcaccgct ttgactttat
    17341 attccggcaa caggcccgct ttaaactcca gccccagctc cccggcaatt gccgccgctg
    17401 cgcgtggatt atcgccggtg aggatcaccc ctttgacgcc cagcgcgttc agttcactga
    17461 tggcagttgc agcatcggcg cgcagggtat cctgcaatgc aatgataccc agcacgtcat
    17521 cattacgtac taccagcaca accgtttgcc cggcgctttc cagttcatta atcaaaccag
    17581 caaatgcatc agcgggatgt ttcccggcag cgcatatcaa cacgcgctca ccgttaacct
    17641 gcgcttcaat gccagacccg accagcgccc gctgtgattc ggcggcggga atggcgagtg
    17701 cagcaacctg tgcttcgcgc acgatggcct gcgccagtgg atgcgtcgcg ctttgctcga
    17761 ccgccgccgc cagtgtcagc agttcagatt cactaatacc cgttgccgga tgaatcgcgg
    17821 taacgcgcgg tttaccgacg gtcagcgtac cggttttatc aaacgccacc tgagtaacac
    17881 gacctagttg ttccagcgcc gctccgcctt taatcaacgc cccacgacgc gctgctgccg
    17941 ccagcccgga ggtaatcgcc gcgggcgtgg agataactaa cgcacacggg cagccaatca
    18001 gcagcagcgt caggccttta taaatccact cctgccagct ggcggcaaac agcagcggtg
    18061 gcaccagcgt caccagcagg gcgacggcca taatcgctgg cgtataaata cggctgaaac
    18121 ggtcgataaa ccgctcaatg ggggcgcggc gctcttcggc ttcttcgatc agtttcagaa
    18181 tccggtcaat ggcgctggca cccggttctg acagcacttc cagcgttacc agacggtcta
    18241 cgctggtggc tcctgcagga actttatcgc ccgtcgcgcg ctccaccgga atggattctc
    18301 cggtcagggc gctttcatca aaactggcaa acggtgagag cagtttaccg tcggcaggca
    18361 aacgcccacc tgcggcgact tcaatcacat cgccaggccg caggctgtta atcgccacct
    18421 cttcccgctc accgttacgc aggcgcgtgg cggtttctgg tttcagcgcc attaacgcgc
    18481 taacgccctg acgcgcgcgg ctggcggccc agccttccag tcgttcacca atcaaaaaca
    18541 gcagcaacac catcgcagct tcagccgttg cgccaataaa cagtgcacca atagcggcta
    18601 cgctcattaa ggtttcaatg gcgaagtagc tgccggattt gatcagccgt aatgcctgat
    18661 gagcaatcgg gtacagccca accagcgtgg tcgcgataaa cgccagttgc ccgaacggat
    18721 gattgaactg ctccagaccc cagctgattg ccatcatcac gattagtgta atcagcggca
    18781 gattctcttt caggcgcgat gcttgtggct cgtcggcggc ctgctcatcg cgcagggaat
    18841 agcccgcttt ttgcaccgca gattcaactt gtgcacgaat gtcattgtcg gcatcaacca
    18901 ccagtttttc ggtggcgaac aacacctgca cctgattcac acctgcaagc tggcgcacgg
    18961 cattttctac cttgcgcgca caggcggcgc agtccatgcc actgactttc cagctatagc
    19021 gggtgccgga gacgttttca gagagcgttg gcgagctgga gcatgcgccg tcgcagcaac
    19081 agtcgttggc gttctgtacc gtggttagcg gtttgaacgc agcaaattga ggggctttct
    19141 tgccgtgatt gtcaggtgtc gacatggcat actccggtta agttttttct cattaaccga
    19201 aggatacact ctggagtcga ctctagagtc aagttttatc agaaatacag tgagcggacg
    19261 atgaggaagt gaccggcaaa gtagcaggcc gcagcaatcg cgttatccgc acggaagcgt
    19321 cggcgatagt ggctccccag ccagacaaag ttactgataa acagcaacga agcgccaaca
    19381 aacgcagaga gcgccggagc ggtcggacgg aagaaccaca gttcacctgc cagccacacc
    19441 atcaccagcg tcatgccgat aaacgtgcag ataggccaac gatactcttc cagccgcgtc
    19501 cagataatcg ccagtaacag cgcacccaga accagcaaca ccagtggcag aggccagaag
    19561 aaagagagcg tcatctgact ggcgaaatag atggtgtaca gcaggtgcga gaggaaaaac
    19621 gcgccgatgg cgtacatcag acgttgacgt ggcaacaggg ttagcgcatc gcccagcagt
    19681 gaggcgcaca gccctgccag caccagatag ctaatggcgt cgaacatcgg cgcttgccag
    19741 gccagtaaca gcaggagaag aagggttaac ggtttaaaca cccagcgttg ccaggttggc
    19801 ccacgatacg atgcatccac agatagccat gcggaaagac agacagcgat aaacgaccaa
    19861 agcatcttag ttccttgaat tcgttatttt ttcgtaagcg gaatgcctac ggtcttgctt
    19921 ccagtttagt ggcgagggtg gacggatgac aacaccataa ctagcagggt atgcttattt
    19981 ccgcattttc cgatgaggga taaagatgag caaaccacct cttttcttta ttgttatcat
    20041 tggcttaatt gtcgtcgccg catcgtttcg ttttatgcaa cagcgacggg aaaaagctga
    20101 taatgatatg gctccgctcc agcaaaagct ggtggtggtg agcaacaagc gggaaaaacc
    20161 gattaacgat cgccgttcgc gccagcagga agtgactccg gcaggcacca gtatgcgcta
    20221 tgaggcaagc ttcaaaccgc aaagcggagg aatggagcag acgtttcgcc tcgacgccca
    20281 gcagtaccat gccctgacag tgggcgataa aggtacgctg agctataaag gaacgcgctt
    20341 tgttagcttt gttggcgaac aataaggtta ttttttaact ttaaatttct tctgccagac
    20401 cagcagttca aacacgccga aaaggaaaat ccgcaccttt tcggcggtgg tcatctgcgg
    20461 gccatctttc ggtaaagtgg atttcaatag cgccagctgc ataccatgca tcagcacggt
    20521 aaaaatcagc gccacgttaa cgaaaatatt cagcgggcgc gggaagggat gcaccagatt
    20581 gaggattaaa aatccccaaa cgcagagcat taacaaacga ccaatattaa tcagcatcac
    20641 tttctccttg tgcttcgcgt tgatacagcc gataagccac ctgacccgcc actttttccc
    20701 gatgtaatga ccagtttgcc ggaacagtgg gcagaccgtt ttcgacttcg ctttcgacat
    20761 aaatcagggc ttcgtcagcc agccagccgt tatcttccag taaatttatc gtctcttcta
    20821 acaagccacg gcggaacggt ggatcgacaa acacgatatt atgcggtgta cctttttgcg
    20881 ccaggaatga catcgcgttg ctgttcacca cgcgtgcatt gcctgctttt agtgtcgcca
    20941 gattcttaat taactgctga gaaaccgcgc gatccatctc aatcaacgtg gcccccgcag
    21001 cgtagcgcga taacgcttcc agtcccagcg cgccgctccc ggcgaagcaa tccagacatt
    21061 gggcgtcaac aatgaccgga gccagccagt taaacaatgt ttcgcgtacg cggtcggtgg
    21121 tggggcgcag acctgggcta tcaggaaccg ggagtttacg gcctcgccac tgcccgccaa
    21181 taatgcggat ttggccgctg ccggaatgat tcggtttttt catgataaat tgctcaatcc
    21241 gccagataac acatacttgc aggcggtgat gtgaattaag ttaagtgata gactatttca
    21301 tcattttttt agctgctatg tacatagcgt taacgctgtg ccatgaagca acagcgagga
    21361 gtgtagtcgc aaatggcgaa agaaaaaaaa cgtggctttt tttcctggct gggctttggt
    21421 caaaaagagc agaccccgga aaaagagaca gaagttcaga atgaacaacc ggttgtagaa
    21481 gaaatcgttc aggcgcaaga gcctgcgaag gcttctgaac aagccgtcga agagcaaccg
    21541 caggcgcata ctgaagccga ggcggaaact tttgctgccg acgttgtgga agtcactgaa
    21601 caggttgctg aaagtgaaaa agcgcagcct gaagcggaag tcgttgcaca gccggaaccg
    21661 gtcgtagaag aaacgccgga gccagtggct atcgaacgtg aagagctgcc gttgccggaa
    21721 gacgtcaacg ccgaagaggt ttcgccagaa gagtggcagg ctgaagcgga aaccgtagag
    21781 attgtcgaag cggcggaaga agaagcggct aaagaagaaa tcaccgacga agagctggaa
    21841 gcacaggcgc tggctgccga agcggcagaa gaggcggtga tggtggttcc tccggtagaa
    21901 gagcagccgg tggaagaaat cgctcaggag caggaaaaac cgaccaaaga aggtttcttc
    21961 gcgcgcctga aacgcagcct gttaaaaacc aaagaaaatc tcggttccgg atttatcagc
    22021 ctgttccgcg gtaaaaaaat cgacgatgat ctgtttgagg agctggaaga acagctgttg
    22081 atcgccgatg tgggcgtgga aaccacacgt aaaattatca ccaatctgac ggaaggcgca
    22141 tcccgcaagc agcttcgtga tgccgaggcg ctctatggcc tgctgaaaga agagatgggc
    22201 gagattctgg cgaaagtcga tgagccgctg aatgttgaag gtaaaacgcc gttcgtgatc
    22261 ctgatggtgg gcgtcaacgg tgtgggtaaa actacgacga ttggtaagct ggcacgtcag
    22321 tttgagctgc agggtaaatc ggtgatgctg gcggcgggcg atactttccg tgcagcagcg
    22381 gttgaacagc ttcaggtctg gggtcagcgc aacaatattc cggtgattgc ccagcatacc
    22441 ggtgcggatt ccgcctctgt tatcttcgac gccattcagg cagctaaagc gcgtaatatc
    22501 gacgtcctga ttgccgatac cgccggacgc ctgcagaaca aatcgcacct gatggaagag
    22561 ttgaagaaaa tcgtccgcgt gatgaagaaa ctcgacgttg aagcgccgca tgaagttatg
    22621 ctgactattg atgccagtac cgggcagaat gcggtaagcc aggccaaact gttccacgaa
    22681 gccgttggct taaccggcat cacgctaacg aaactggacg gcacggcgaa aggcggggta
    22741 attttctcgg tggctgacca gtttggtatc cctatccgct acattggtgt cggcgaacgt
    22801 attgaggatt tgcgtccgtt taaggcggac gactttatag aggcactttt tgcccgagag
    22861 gattaacaat gattcgcttt gaacatgtca gcaaggctta tctcggtggg agacaggcgc
    22921 tgcagggcgt tacgttccat atgcagccgg gtgagatggc gtttctgacc ggtcattccg
    22981 gcgcagggaa aagtaccctc ctgaagctga tctgtgggat tgagcggccc agcgccggga
    23041 aaatctggtt tagcggccat gacatcacgc gtctgaaaaa ccgtgaagtt ccgtttctgc
    23101 gccgccagat tggcatgatt ttccaggatc accatctact gatggaccgt actgtctacg
    23161 ataacgtggc gatcccgctg attatcgctg gtgccagcgg tgacgatatt cgtcgccggg
    23221 tgtcggcggc actggataaa gtcgggctac tggacaaagc gaagaacttc cctattcagc
    23281 tttccggcgg tgaacaacag cgtgttggca ttgcccgcgc ggtggtgaat aagcccgcgg
    23341 tactgctggc ggacgaaccg accggtaacc tggacgacgc gttgtcggaa gggattctac
    23401 gtctgtttga agagtttaac cgcgttgggg taaccgtatt gatggcaacg cacgacatca
    23461 acctgatttc acggcgttcc tatcgcatgc tcaccctgag cgatggtcac ttgcatggag
    23521 gcgtgggcca tgaataagcg cgatgcaatc aatcatattc ggcagtttgg tgggcgtctg
    23581 gatcgcttcc gtaaatcggt cggcggctca ggcgacggcg gtcgtaacgc accgaaacgc
    23641 gcgaaatcct cgccaaaacc ggtaaatcgc aaaaccaacg ttttcaacga acaggtgcgc
    23701 tatgccttcc acggcgcatt gcaggatctg aaaagcaaac cgttcgccac gtttttaacg
    23761 gtgatggtta tcgccatctc cctgacgctg cccagcgtct gttatatggt gtacaaaaac
    23821 gttaatcagg cggcgacgca gtattatccg tcaccgcaaa tcactgttta cttgcaaaaa
    23881 acgctggacg atgacgccgc tgcgggcgtg gtggcacagt tgcaggccga gcaaggcgtg
    23941 gagaaagtga actatctttc tcgtgaagac gcactgggcg agttccgtaa ctggtctggt
    24001 tttggtggtg cgctggatat gctggaagaa aacccgcttc cggcagtggc ggtggtgatc
    24061 ccgaaactcg attttcaggg gacggaatca ctcaatacgc tgcgtgatcg tatcacgcag
    24121 attaacggca ttgacgaagt gcggatggat gacagctggt ttgcccgtct ggcggcgttg
    24181 accgggctgg tcgggcgcgt ttcggcgatg atcggcgtgt tgatggtggc ggcagtgttc
    24241 ctcgtcatcg gcaacagcgt acgtctgagc atctttgctc gccgtgactc catcaacgtg
    24301 cagaaactga ttggtgcgac ggatggtttc atccttcgcc cgttcctgta tggtggcgca
    24361 ctgctgggat tttctggcgc attgttgtca ttaattttgt cagaaattct ggtgctgcga
    24421 ttgtcatcgg cggttgcgga agtggcacag gttttcggaa cgaattttga tatcaatggt
    24481 ttatcgttcg atgaatgcct gctattgctg ctggtatgct cgatgattgg ctgggtggca
    24541 gcgtggcttg ccacggtaca acatttacgc cactttacgc ctgaataata aaagcgtgtt
    24601 atactctttc cctgcaatgg gttccgtagc agggaaagag atcccgttgt ctcttcccgg
    24661 tatttcatct ctatgtcaca ttttgtgcgt aatttattca caagcttgca ttgaacttgt
    24721 ggataaaatc acggtctgat aaaacagtga atgataacct cgttgctctt aagctctggc
    24781 acagttgttg ctaccactga agcgccagaa gatatcgatt gagaggattt gaatgactga
    24841 caaaatgcaa agtttagctt tagccccagt tggcaacctg gattcctaca tccgggcagc
    24901 taacgcgtgg ccgatgttgt cggctgacga ggagcgggcg ctggctgaaa agctgcatta
    24961 ccatggcgat ctggaagcag ctaaaacgct gatcctgtct cacctgcggt ttgttgttca
    25021 tattgctcgt aattatgcgg gctatggcct gccacaggcg gatttgattc aggaaggtaa
    25081 catcggcctg atgaaagcag tgcgccgttt caacccggaa gtgggtgtgc gcctggtctc
    25141 cttcgccgtt cactggatca aagcagagat ccacgaatac gttctgcgta actggcgtat
    25201 cgtcaaagtt gcgaccacca aagcgcagcg caaactgttc ttcaacctgc gtaaaactaa
    25261 gcagcgtcta ggctggttta accaggatga agtcgaaatg gtggcccgtg aactgggcgt
    25321 aaccagcaaa gacgttcgtg agatggaatc acgtatggcg gcacaggaca tgacctttga
    25381 tctgtcttcc gacgacgatt ccgacagcca gccgatggca ccggtgctct atctgcagga
    25441 taaatcatct aactttgccg acggcatcga agatgataac tgggaagagc aggcggcaaa
    25501 ccgtctgacc gacgcgatgc aaggtctgga cgaacgcagc caggacatca tccgcgcgcg
    25561 ctggctggac gaagacaaca agtccacgtt gcaggaactg gctgaccgtt acggtgtttc
    25621 cgctgaacgt gtacgccagc tggaaaagaa cgcgatgaaa aaactgcgcg ctgctataga
    25681 agcgtaattt ccgctattaa gcagagaacc ctggatgaga gtccggggtt tttgtttttt
    25741 gggcctctac aataatcaat tccccctccg gcaaaacgtc aatccccacg cagattgtta
    25801 ataaactgtc aaaatagcta ttccaatatc ataaaaatgg ggtatgtttt agcagagtat
    25861 gctgctaaag cacgggtagt catgcataaa acgaaataaa gtgctaaatc acaacaccac
    25921 aacacacgta ataaccagaa gaatggggat tctcaggatg aatataaagg gtaaagcgtt
    25981 actggcagga tgtatcgcgc tggcattcag caatatggct ctggcagaag atattaaagt
    26041 cgcggtcgtg ggcgcaatgt ccggtccggt tgcgcagtac ggtgaccagg agtttaccgg
    26101 cgcagagcag gcggttgcgg atatcaacgc taaaggcggc attaaaggca acaaactgca
    26161 aatcgtaaaa tatgacgatg cctgtgaccc gaaacaggcg gttgcggtgg cgaacaaagt
    26221 cgttaacgac ggcattaaat atgtgattgg tcacctctgt tcttcatcaa cgcagcctgc
    26281 gtctgatatc tacgaagacg aaggcatttt aatgatcacc ccagcggcaa ccgcgccgga
    26341 gctgaccgcc cgtggctatc agctgatcct gcgcaccacc ggcctggact ccgaccaggg
    26401 gccgacggcg gcgaaatata ttcttgagaa agtgaaaccg cagcgtattg ctatcgttca
    26461 cgacaaacag caatacggcg aaggtctggc gcgagcggtg caggacggcc tgaagaaagg
    26521 caatgctaac gtggtgttct ttgatggtat caccgccggg gaaaaagatt tctcaacgct
    26581 ggtggcgcgt ctgaaaaaag agaatatcga cttcgtttac tacggcggtt atcacccgga
    26641 aatggggcaa atcctgcgtc aggcacgcgc ggcagggctg aaaactcagt ttatggggcc
    26701 ggaaggtgtg gctaacgttt cgctgtctaa cattgcgggc gaatcagcgg aagggctgct
    26761 ggtgaccaag ccgaagaact acgatcaggt tccggcgaac aaacccattg ttgacgccat
    26821 caaagcgaaa aaacaggacc caagcggcgc attcgtttgg accacctacg ccgcgctgca
    26881 atctttgcag gcgggcctga atcagtctga cgatccggct gagatcgcca aatacctgaa
    26941 agcgaactcc gtggataccg tgatgggtcc gctgacgtgg gatgagaaag gtgatctgaa
    27001 aggctttgag ttcggcgtat ttgactggca cgccaacggc acggcgaccg atgcgaagta
    27061 atcattaatc ggcaactttg ggttgccgcc aaattgctaa tatcgagtac gttgcttcat
    27121 gccggatgcg gcgtaaacgc cttatccggc ctacaagatc caaagaaatc agtaaattgc
    27181 aacacacatt gtaggcctga taagcgtagc gcatcaggca atttctcgtt ggtcatcact
    27241 tttgaaatca acttgacgat taacgcttct cccagccgcc ctgttgcgcc gtaaatccca
    27301 gtgcctgcat aaacgccgtc atcacaccgc gatcttccac gcctgcatcc gccatccacc
    27361 agcatgaaac gccaggattg ttacgcaaaa cctcttccag cagatattgc cccacaccgc
    27421 gacgtcgggt gacttcccgc acacgcaggg aatccagtgc tccctcggtg ccgcttaagg
    27481 ttacccgtac ggcagcgagc aggcgctcgt taaaacgcgc ggcgtagata cggtggttat
    27541 cgtcaacctg taaagaggaa ggggaatact ccggccagat cttttgcagg tcaatccggt
    27601 cctggtcgct aaagttttct aatcgaatga tggtcagctt catgggtaac ccgtgtaaat
    27661 cacaaaagtg gaaccagtgt agcgaaataa tttaatcgga ggctttctct tttttatttc
    27721 ttttggcagg tgattaattt tttaacagca ataattacaa agttaaaaca ttagagaatg
    27781 aaaaataccc agcataatcc cctgaatggt agtgaattat tccgcccttt gtgccgttat
    27841 tttatgctga
//
LOCUS       DAJVSY010000038        27675 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.038, whole genome shotgun sequence.
ACCESSION   DAJVSY010000038 DAJVSY010000000
VERSION     DAJVSY010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27675
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.038"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(211..420)
                     /gene="fumD"
                     /locus_tag="OQQ19_001490"
     CDS             complement(211..420)
                     /gene="fumD"
                     /locus_tag="OQQ19_001490"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase FumD"
                     /protein_id="HCS1803163.1"
                     /translation="MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTA
                     LANKRIQRSELDKQAMETVINALVK"
     gene            977..2389
                     /gene="pykF"
                     /locus_tag="OQQ19_001491"
     CDS             977..2389
                     /gene="pykF"
                     /locus_tag="OQQ19_001491"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010346010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase PykF"
                     /protein_id="HCS1803164.1"
                     /translation="MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHG
                     QRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGN
                     SEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNL
                     PGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHII
                     SKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVIT
                     ATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICER
                     TDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFP
                     DATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVV
                     MVSGALVPSGTTNTASVHVL"
     gene            2700..2936
                     /gene="lpp"
                     /locus_tag="OQQ19_001492"
     CDS             2700..2936
                     /gene="lpp"
                     /locus_tag="OQQ19_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein lipoprotein Lpp"
                     /protein_id="HCS1803165.1"
                     /translation="MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQL
                     SNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK"
     gene            complement(3000..4004)
                     /gene="ldtE"
                     /locus_tag="OQQ19_001493"
     CDS             complement(3000..4004)
                     /gene="ldtE"
                     /locus_tag="OQQ19_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase LdtE"
                     /protein_id="HCS1803166.1"
                     /translation="MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTV
                     QEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNL
                     AELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLER
                     GIKLLPVVPAGPNNPLGRYALRFAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIK
                     ALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQ
                     FKDNKAVDQKLVDKALYRRAGYPVSVSSGATPAASNAPSVESAQNGEPEQGNMLRARQ
                     "
     gene            complement(4153..4569)
                     /gene="sufE"
                     /locus_tag="OQQ19_001494"
     CDS             complement(4153..4569)
                     /gene="sufE"
                     /locus_tag="OQQ19_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfuration protein SufE"
                     /protein_id="HCS1803167.1"
                     /translation="MALLPDKEKLLRNFLRCANWEEKYLYIIELGQRLPELRDEDRSP
                     QNSIQGCQNQVWIVMRQNAQGIIELQGDSDAAIVKGLIAVVFILYDQMTPQDIVNFDV
                     RPWFEKMALTQHLTPSRSQGLEAMIRAIRAKAAALS"
     gene            complement(4582..5802)
                     /gene="sufS"
                     /locus_tag="OQQ19_001495"
     CDS             complement(4582..5802)
                     /gene="sufS"
                     /locus_tag="OQQ19_001495"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase SufS"
                     /protein_id="HCS1803168.1"
                     /translation="MTFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEA
                     EFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVA
                     NSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLHTL
                     FDEKTRLLAITHVSNVLGTENPLAGMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCD
                     FYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEA
                     GTPNTGGIIGLGAALEYVSVLGLNNIAEYELNLMHYALSQLESVPNLTLYGPQNRLGV
                     IAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVD
                     RLVTGLQRIHRLLG"
     gene            complement(5799..7070)
                     /gene="sufD"
                     /locus_tag="OQQ19_001496"
     CDS             complement(5799..7070)
                     /gene="sufD"
                     /locus_tag="OQQ19_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HCS1803169.1"
                     /translation="MAGLPNSSNALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTR
                     KHENWKYTSLEGLTNSQFVSIAGEISPQQRDALALTLDAVRLVFVDGRYVPALSDAIE
                     GSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMYITQG
                     VAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKL
                     AFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMP
                     VKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNN
                     LLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQMFYLRSRGINQQDAQQMIIYA
                     FAAELTEALRDEGLKQQVLARIGQRLPGGAR"
     gene            complement(7045..7791)
                     /gene="sufC"
                     /locus_tag="OQQ19_001497"
     CDS             complement(7045..7791)
                     /gene="sufC"
                     /locus_tag="OQQ19_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008500629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HCS1803170.1"
                     /translation="MLSIKDLHVSVEDKAILRGLSLAVRPGEVHAIMGPNGSGKSTLS
                     ATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA
                     LNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA
                     VLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV
                     LYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ"
     gene            complement(7801..9288)
                     /gene="sufB"
                     /locus_tag="OQQ19_001498"
     CDS             complement(7801..9288)
                     /gene="sufB"
                     /locus_tag="OQQ19_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416198.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HCS1803171.1"
                     /translation="MSRNTEATDDVKTWTGGPLNYKEGFFTQLATDELAKGINEEVVR
                     AISAKRNEPEWMLEFRLNAYRAWLEMEEPHWLKAHYDKLNYQDYSYYSAPSCGNCDDT
                     CASEPGAVQQTGANAFLSKEVEAAFEQLGVPVREGKEVAVDAIFDSVSVATTYREKLA
                     EQGIIFCSFGEAIHDHPELVRKYLGTVVPGNDNFFAALNAAVASDGTFIYVPKGVRCP
                     MELSTYFRINAEKTGQFERTILVADEDSYVSYIEGCSAPVRDSYQLHAAVVEVIIHKN
                     AEVKYSTVQNWFPGDNNTGGILNFVTKRALCEGENSKMSWTQSETGSAITWKYPSCIL
                     RGDNSIGEFYSVALTSGHQQADTGTKMIHIGKNTKSTIISKGISAGHSQNSYRGLVKI
                     MPTATNARNFTQCDSMLIGANCGAHTFPYVECRNNSAQLEHEATTSRIGEDQLFYCLQ
                     RGISEEDAISMIVNGFCKDVFSELPLEFAVEAQKLLAISLEHSVG"
     gene            complement(9297..9665)
                     /gene="sufA"
                     /locus_tag="OQQ19_001499"
     CDS             complement(9297..9665)
                     /gene="sufA"
                     /locus_tag="OQQ19_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold SufA"
                     /protein_id="HCS1803172.1"
                     /translation="MDMHSGTFNPQDFAWQGLTLTPAAAIHIRELVAKQPGMVGVRLG
                     VKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLNQI
                     FKFHNPKAQNECGCGESFGV"
     gene            complement(10213..10401)
                     /locus_tag="OQQ19_001500"
     CDS             complement(10213..10401)
                     /locus_tag="OQQ19_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416200.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiH family protein"
                     /protein_id="HCS1803173.1"
                     /translation="MSTQLDPTQLAIEFLRRDQSNLSPAQYLKRLKQLELEFADLLTL
                     SSAELKEEIYFAWRLGVH"
     gene            complement(10501..10911)
                     /gene="menI"
                     /locus_tag="OQQ19_001501"
     CDS             complement(10501..10911)
                     /gene="menI"
                     /locus_tag="OQQ19_001501"
                     /EC_number="3.1.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA hydrolase"
                     /protein_id="HCS1803174.1"
                     /translation="MIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDS
                     RTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGIC
                     KPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL"
     gene            complement(10908..13964)
                     /locus_tag="OQQ19_001502"
     CDS             complement(10908..13964)
                     /locus_tag="OQQ19_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HCS1803175.1"
                     /translation="MIPQISQAPGVVQLVLNFLQELEQQGFTGDTATSYADRLTMSTD
                     NSIYQLLPDAVVFPRSTADVALIARLAAQERYSSLIFTPRGGGTGTNGQALNQGIIVD
                     MSRHMNRIIEINPEEGWVRVEAGVIKDQLNQYLKPFGYFFAPELSTSNRATLGGMINT
                     DASGQGSLVYGKTSDHVLGVRAVLLGGDVLDTQPLPVELAETLGKSNTTIGRIYNTVY
                     QRCRQQRQLIIDNFPKLNRFLTGYDLRHVFNDEMTEFDLTRILTGSEGTLAFITEARL
                     DITRLPKVRRLVNVKYDSFDSALRNAPFMVEARALSVETVDSKVLNLAREDIVWHSVS
                     ELITDVPDQEMLGLNIVEFAGDDEALIDERVNALCARLDELIASHQAGVIGWQVCREL
                     AGVERIYAMRKKAVGLLGNAKGAAKPIPFAEDTCVPPEHLADYIAEFRALLDSHGLSY
                     GMFGHVDAGVLHVRPELDMCDPQQEILMKQISDDVVALTAKYGGLLWGEHGKGFRAEY
                     SPAFFGEELFAELRKVKAAFDPHNRLNPGKICPPEGLDAPMMKVDAVKRGTFDRQIPI
                     AVRQQWRGAMECNGNGLCFNFDARSPMCPSMKITQNRIHSPKGRATLVREWLRLLADR
                     GVDPLKLEQELPESGVSLRTLIARTRNSWHANKGEYDFSHEVKEAMSGCLACKACSTL
                     CPIKIDVPEFRSRFLQLYHTRYLRPLRDHLVATVESYAPLMARAPKTFNFFINQPLVR
                     KLSEKHIGMVDLPLLSVPSLQQQMVGHRSANMTLEQLESLNAEQKARTVLVVQDPFTS
                     YYDAQVVADFVRLVEKLGFQPVLLPFSPNGKAQHIKGFLNRFAKTAKKTADFLNRMAK
                     LGMPMVGVDPALVLCYRDEYKLALGEERGEFNVLLANEWLASALESQPVATVSGESWY
                     FFGHCTEVTALPGAPAQWAAIFARFGAKLENVSVGCCGMAGTYGHEAKNHENSLGIYE
                     LSWHQAMQRLPRNRCLATGYSCRSQVKRVEGTGVRHPVQALLEIIK"
     gene            14353..15465
                     /gene="ydiK"
                     /locus_tag="OQQ19_001503"
     CDS             14353..15465
                     /gene="ydiK"
                     /locus_tag="OQQ19_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter YdiK"
                     /protein_id="HCS1803176.1"
                     /translation="MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTV
                     VIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISS
                     GDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHI
                     GRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGV
                     VVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTT
                     WGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLL
                     AVSWRLFAAWVEEVPPPTDQPEEILEELGEIEKPNK"
     gene            15651..15758
                     /gene="rprA"
                     /locus_tag="OQQ19_001504"
     ncRNA           15651..15758
                     /ncRNA_class="antisense_RNA"
                     /gene="rprA"
                     /locus_tag="OQQ19_001504"
                     /product="antisense sRNA RprA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00034"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00034"
     gene            15893..16272
                     /locus_tag="OQQ19_001505"
                     /pseudo
     CDS             15893..16272
                     /locus_tag="OQQ19_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001014786.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YdiL family protein"
     gene            16217..16939
                     /locus_tag="OQQ19_001506"
                     /pseudo
     CDS             16217..16939
                     /locus_tag="OQQ19_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310425.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            16951..17817
                     /gene="ydiB"
                     /locus_tag="OQQ19_001507"
                     /pseudo
     CDS             16951..17817
                     /gene="ydiB"
                     /locus_tag="OQQ19_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416207.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="quinate/shikimate dehydrogenase"
     gene            17849..18607
                     /gene="aroD"
                     /locus_tag="OQQ19_001508"
     CDS             17849..18607
                     /gene="aroD"
                     /locus_tag="OQQ19_001508"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HCS1803177.1"
                     /translation="MKTVTVKDLVIGTGAPKIIVSLMAKDIARVKSEALAYREADFDI
                     LEWRVDHFADLSNVESVMAAAKILRETMPEKPLLFTFRSAKEGGEQAISTEAYIALNR
                     AAIDSGLVDMIDLELFTGDDQVKETVACAHAHDVKVVMSNHDFHKTPEAEEIIARLRK
                     MQSFDADIPKIALMPQSTSDVLTLLAATLEMQEQYADRPIITMSMAKTGVISRLAGEV
                     FGSAATFGAVKKASAPGQISVNDLRTVLTILHQA"
     gene            18753..20348
                     /locus_tag="OQQ19_001509"
     CDS             18753..20348
                     /locus_tag="OQQ19_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HCS1803178.1"
                     /translation="MKPVKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEAT
                     TLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRI
                     SELAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKE
                     DLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNN
                     GGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLD
                     DSTKLSLPLNQRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVET
                     GPIGGITSQGIAFGANVNTRAILDMTSQFNFYHGGGLDVCYLSFAEVDQHGNVGVHKF
                     NGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEERVKKFIQELPEI
                     TFSGKIALERELDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDKMDFTPVISPE
                     LKLMDERLFIDAAMGFVLPEAAH"
     gene            20362..21513
                     /locus_tag="OQQ19_001510"
     CDS             20362..21513
                     /locus_tag="OQQ19_001510"
                     /EC_number="1.3.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310429.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HCS1803179.1"
                     /translation="MDFSLTEEQELLLASIRELITTNFAEEYFRTCDQNGTYPREFMR
                     ALADNGISMLGVPEEFGGIPADYVTQMLALMEVSKCGAPAFLITNGQCIHSMRRFGSA
                     EQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYINGQKTFITGAK
                     EYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDNVEV
                     EESDMVGEEGMGFLNVMYNFEMERLINAARSTGFAECAFEDAARYANQRIAFGKPIGH
                     NQMIQEKLALMAIKIDNMRNMVLKVAWQADQHQSLRTSAALAKLYCARTAMEVIDDAI
                     QIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKDYQNK"
     gene            complement(21556..22467)
                     /locus_tag="OQQ19_001511"
     CDS             complement(21556..22467)
                     /locus_tag="OQQ19_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HCS1803180.1"
                     /translation="MYQRCFDNASETLFVAGKTPRLSRFAFSDDPKWESGHHVHDNET
                     ELIYVKKGVARFTIDSSLYVAHADDIVVIERGRLHAVASDVNDPATTCTCALYGFQFQ
                     GAEENQLLQPHSCPVIAAGQGKEVIKTLFNELSVILPQSKNSQTSSLWDAFAYTLAIL
                     YYENFKNAYRSEQGYIKKDVLIKDILFYLSNNYREKITLEQLSKKFRASVSYICHEFT
                     KEYRISPINYVIQRRMTEAKWSLTNTELSQAEISWRVGYENVDHFAKLFLRHVGCSPS
                     DYRRQFKNCFAEQEILSEFPQPVSLVG"
     gene            22781..23552
                     /locus_tag="OQQ19_001512"
                     /pseudo
     CDS             22781..23552
                     /locus_tag="OQQ19_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416212.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein"
     gene            23572..24510
                     /locus_tag="OQQ19_001513"
     CDS             23572..24510
                     /locus_tag="OQQ19_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit alpha"
                     /protein_id="HCS1803181.1"
                     /translation="MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAV
                     MPYGPKCIYVLEQNDALQRTENYAESIAAPLKDKHPAMLLLAATKRGKALAARLSVQL
                     NAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSH
                     QCPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAA
                     VLNAEVGCSRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVI
                     VAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR"
     gene            24566..25855
                     /locus_tag="OQQ19_001514"
     CDS             24566..25855
                     /locus_tag="OQQ19_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HCS1803182.1"
                     /translation="MSDDKFDAIVVGADVASSVAALVMARAGLDVLVIERGDSAGCKN
                     MTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHAS
                     YTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILQANVVVLAD
                     GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSD
                     GLMGGGFLYTNKDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEY
                     SAHMVPEGGLAMVPQMVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAA
                     KEREDFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYSRMVADIMNEMF
                     TIDGKPNQPVRKMIMGHAKKIGLINLLKDGIKGATAL"
     gene            25852..26145
                     /locus_tag="OQQ19_001515"
     CDS             25852..26145
                     /locus_tag="OQQ19_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HCS1803183.1"
                     /translation="MSQNATVNVDIKLGVNKFHVDEGHPHIILAANPDINEFRKLMKA
                     CPAGLYKQDDAGNIHFDSAGCLECGTCRVLCGNTILEQWQYPAGTFGIDFRYG"
     gene            26202..>27675
                     /gene="fadK"
                     /locus_tag="OQQ19_001516"
     CDS             26202..>27675
                     /gene="fadK"
                     /locus_tag="OQQ19_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310435.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="medium-chain fatty-acid--CoA ligase"
                     /protein_id="HCS1803184.1"
                     /translation="MKVTLTFNEQRRAAYRQQGLWGDASLADYWQQTARAMPDKIAVV
                     DNHGATYTYSALDHAASCLANWMLAKGIESGDRIAFQLPGWCEFTVIYLACLKIGAVS
                     VPLLPSWREAELVSVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKL
                     APATSSLSLSPIIADNTSLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASER
                     AYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQ
                     RCTCMLGATPFVYDLLNVLEKQPADLSALRFFLCGGTTIPKKVARECQQRGIKLLSVY
                     GSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDDARKTLPPGCEGEEASRGPNV
                     FMGYFDEPELTARALDEEGWYCSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVE
                     DILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLSL"
BASE COUNT         6906 a         7001 c         6803 g         6965 t
ORIGIN      
        1 aactgatatt tattatcatt tgaaataaat ttaacttaag cgacaattat ttgtgacgtt
       61 cattgcagaa aataaaaata atattatcgt tataaattaa aatacatacc gcaattcgta
      121 taatttcagc agttgttatt tagaatgatt aactggaccg caactgaagc aagaatatca
      181 ggatgaagct taccgcctca tcctgaatgg tcattttacc agtgcgttaa tgacggtttc
      241 catcgcctgc ttatccagct cactgcgctg aatgcgttta ttggctaatg ctgtacgtaa
      301 tacgcctgcg ataacaatat gctttggttc ctgccccaga tcgcgcattt ccagcacaac
      361 tttaccgaca actctgcaca tttctcggta cagttcatcc tcttttgtcc gatttcccat
      421 tctttatacc tatttatcat gccaactatc agcatatatc aatctaacca attaaacaaa
      481 aatcaaacaa aatcagacaa ataacgcgat aaattatttt aactgtagca attgagcgat
      541 gatatattta tacaccggat gaactttcac ttatcctcac actgacaact ttggcaccag
      601 acgttgcgca aacagcgaag tttttgcgta accttttccc tggaacgtta aatctttgat
      661 aacaatttat tgtctaacaa gttgtatatt ttttgaaacg ctgtttttgt tttccttttg
      721 gattaatttc agcgtataat gcgcgccaat tgactcttga atggtttcag cactttggac
      781 tgtagaactc aacgactcaa aaacaggcac tcacgttggg ctgagacaca agcacacatt
      841 cctctgcacg ctttttcgat gtcacttatc cttagagcga ggcaccacca ctttcgtaat
      901 accggattcg ctttccggca gtgcgcccag aaagcaagtt tctcccatcc ttctcaactt
      961 aaagactaag actgtcatga aaaagaccaa aattgtttgc accatcggac cgaaaaccga
     1021 atctgaagag atgttagcta aaatgctgga cgctggcatg aacgttatgc gtctgaactt
     1081 ctctcatggt gactatgcag aacacggtca gcgcattcag aatctgcgca acgtgatgag
     1141 caaaactggt aaaaccgccg ctatcctgct tgataccaaa ggtccggaaa tccgcaccat
     1201 gaaactggaa ggcggtaacg acgtttctct gaaagctggt cagaccttta ctttcaccac
     1261 tgataaatct gttatcggca acagcgaaat ggttgcggta acgtatgaag gtttcactac
     1321 tgacctgtca gttggcaaca ccgtactggt tgacgatggt ctgatcggta tggaagttac
     1381 cgccattgaa ggtaacaaag ttatctgtaa agtgctgaac aacggtgacc tgggcgaaaa
     1441 caaaggtgtg aacctgcctg gcgtttccat tgctctgcca gcactggctg aaaaagacaa
     1501 acaggacctg atctttggtt gcgaacaagg cgtagacttt gttgctgctt cctttattcg
     1561 taagcgttct gacgttatcg aaatccgtga gcacctgaaa gcgcacggcg gcgaaaacat
     1621 ccacatcatc tccaaaatcg aaaaccagga aggcctcaac aacttcgacg aaatcctcga
     1681 agcctctgac ggcatcatgg ttgcgcgtgg cgacctgggt gtagaaatcc cggtagaaga
     1741 agttatcttc gcccagaaga tgatgatcga aaaatgtatc cgtgcacgta aagtcgttat
     1801 cactgcgacc cagatgctgg attccatgat caaaaaccca cgcccgactc gcgcagaagc
     1861 cggtgacgtt gcaaacgcca tcctcgacgg tactgatgca gtgatgctgt ctggtgaatc
     1921 cgcaaaaggt aaatacccgc tggaagcggt ttctatcatg gcgaccatct gcgaacgtac
     1981 cgaccgcgtg atgaacagcc gtctcgagtt caacaatgac aaccgtaaac tgcgcattac
     2041 cgaagcggta tgccgtggtg ccgttgaaac tgctgaaaaa ctggatgctc cgctgatcgt
     2101 ggttgctact cagggcggta aatctgctcg cgcagtacgt aaatacttcc cggatgccac
     2161 catcctggca ctgaccacca acgaaaaaac ggctcatcag ttggtactga gcaaaggcgt
     2221 tgtgccgcag ctggttaaag agatcacttc tactgatgat ttctaccgtc tgggtaaaga
     2281 actggctctg cagagcggtc tggcacacaa aggtgacgtt gtagttatgg tttctggtgc
     2341 actggtaccg agcggcacta ctaacaccgc atctgttcac gtcctgtaat attgcttttg
     2401 tgaattaatt tgtatatcga agcgccctga tgggcgcttt ttttatttaa tcgataacca
     2461 gaagcaataa aaaatcaaat cggatttcac tatataatct cactttatct aagatgaatc
     2521 cgatggaagc atcctgtttt ctctcaattt ttttatctaa aacccagcgt tcgatgcttc
     2581 tttgagcgaa cgatcaaaaa taagtgcctt cccatcaaaa aaatattctc aacataaaaa
     2641 actttgtgta atacttgtaa cgctacatgg agattaactc aatctagagg gtattaataa
     2701 tgaaagctac taaactggta ctgggcgcgg taatcctggg ttctactctg ctggcaggtt
     2761 gctccagcaa cgctaaaatc gatcagctgt cttctgacgt tcagactctg aacgctaaag
     2821 ttgaccagct gagcaacgac gtgaacgcaa tgcgttccga cgttcaggct gctaaagatg
     2881 acgcagctcg tgctaaccag cgtctggaca acatggctac taaataccgc aagtaatagt
     2941 acctgtgaag tgaaaaatgg cgcacattgt gcgccatttt ttttgtctgc tatttaccac
     3001 tactgcctcg cgcgtaacat attcccttgc tctggttcac cattctgcgc tgactctact
     3061 gaaggcgcat tgctggctgc gggagttgct ccactgctca ccgaaaccgg ataccctgcc
     3121 cgacgataca acgctttatc gactaacttc tgatctacag ccttattgtc tttaaattgc
     3181 gtaaagcctg ctggcagtgt gtatggcatt gtctgaacgt tctgctgttc ttctgccgat
     3241 agtggtcgat gtacttcaac ataacgcatc ccgttaggct ccacggaata tttcaccggt
     3301 tcgttgatca ctttcaccgg cgttcccgtc cgcacgctgg agaataaggc tttaatatcc
     3361 ggtgcattca tgcgaataca gcccgaactg acgcgtaaac cgacgctgtc cggcgcactg
     3421 gtaccatgaa tgaggtattc gccattacca tgcgcgaagc gcagtgcgta acgtcctagc
     3481 gggttatttg gtccggcagg aacgactggc agtaatttaa tgccacgctc cagcgaacgt
     3541 tgacgaatgc ctgccgtagg cgtccaggtt ggattaggga ttttctgccc cacacgcgtt
     3601 tccatcaccg gcgtttccag cccctgcaag ccaataccta tcggataaac ctgcacgata
     3661 ttttctcccg gcggataata ataaaggcgc agctctgcaa ggttaacgat aatcccctga
     3721 cgcggtgcat caggtaataa cagttgtgaa ggaatagtta tcgtcgtacc aggttttggc
     3781 accggggcga tagtgttatt ggcttcaagg atcaacattg ccgcagtatc aaaacgtcgg
     3841 gcaatagcct gaaggttttt atccccttct tgcaccgtat acgtttgatt ttgcccaacc
     3901 agtcggcttc cggttggtgg tagcggataa tcaaccgccc aggcagcctg gatggcgcta
     3961 aaagcgccga taagcgtgag tgtaagcaaa gacgcgcgtt tcattgtaaa cctcctgtat
     4021 ttgccggaga ctcacgctga aacgtcggat ggcgcttatg ttcacctgaa accaaaacac
     4081 tcctgtgcag gtcagtgtaa acattgacca tccggcaatg tgagccaacc ggatgaaagc
     4141 tgtcccttta gtttagctaa gtgcagcggc tttggcgcga attgcgcgaa tcatcgcttc
     4201 cagaccttgt gaacgagatg gggtgagatg ttgggtgagc gccatttttt caaaccacgg
     4261 acgcacatcg aaattgacaa tatcctgcgg cgtcatctga tcgtagagaa taaatacgac
     4321 cgcaataagc cctttcacaa tcgccgcatc gctgtcgccc tgcaattcaa taattccctg
     4381 cgcattctgg cgcatgacaa tccacacctg attctggcag ccctgaatgc tattttgtgg
     4441 gcttcggtct tcgtcgcgta attctggcag acgctggccc agctcaataa tgtagagata
     4501 tttctcttcc cagttggcgc agcgtaaaaa attacgcagc aatttttctt tatccggcaa
     4561 taaagccata gtgcctccct gttatcccag cagacggtga atacgttgca ggccggtcac
     4621 cagacgatcc acttcttcat gagtgttata catggccagc gacgcccgac acatcgcagg
     4681 gacgttgtaa taggccatta atggcatagc gcagtgatgt ccggtacgca cagcaatgcc
     4741 gtaattatcg agaaaactgc caacatcata ggcgtggtgt ttaccgagat taaaagcaat
     4801 aacgccaagc ctgttttgtg ggccatagag agtgagattc ggtacagatt ccagctgtga
     4861 tagcgcgtaa tgcatcagat tcagttcata ctcggctatg ttattaagcc ccagcaccga
     4921 aacatattcc agcgccgcgc caagaccaat gatgcccccg gtattgggtg taccggcttc
     4981 aaaccgccat ggtgctttgg tccaggtagt gccttcactc aggctgacgg tggcgatcat
     5041 agaaccgccc ccttcccacg gcggcatctc ctgcaacaag gcttctttga cataaagaat
     5101 gccaatcccg gtggggccat acagtttatg cccggaaaac acgtaaaaat cgcaatccag
     5161 cgcctgaaca tccaccggat gatgcatcac cgcctgagcg ccatccacca gcacttttgc
     5221 gccatgctgg tgcgcaagcg tgatcattcc cgccagtgga ttttctgtgc caagcacgtt
     5281 ggagacatga gtaattgcca gcaggcgagt tttctcatca aacagcgtat gcagcgtctc
     5341 cagttgcagc gtaccgtcgg ggttgagagg gatcacacgc agctctgcgc caacgcgtgc
     5401 gcaaagcatc tgccagggga caatgttagc gtggtgctcc atctgactga tgatgatgtt
     5461 atcgcccgcc cgcacattgc tgttgcccca gctattggcg accagattga tcccttccgt
     5521 cgtgccgcgg acgaacacca gctcttccgc cgaacgggca ttaataaaca gcgatgcccg
     5581 cttgcgcacg ttctccattt tctcggtcgc ctgggcgctt aaggtatgaa taccgcgatg
     5641 caccgccgcg tagccatgac gataaaactc ggcctcggcg tcaatcacct ggctcggttt
     5701 ctgtgcactg gcggcgctgt cgagataagc cagcggcaaa ccgtttacct cacgcgaaag
     5761 caccggaaag tcggcccgca ctttgtcgac ggaaaaagtc atcttgcacc tcctggcagc
     5821 cgttgaccga ttcgggccag cacctgctgt ttaagcccct catcacgcag tgcttccgtc
     5881 agttcggcag caaaggcgta aatgatcatc tgctgggcat cctgctgatt gatcccgcgc
     5941 gagcgcagat agaacatctg ttcatcatca atacgcccca ccgtcgcgcc gtggctgcat
     6001 ttcacatcat ctgcatagat ttccagctgc ggtttcgtat ccacttccgc cagtttgccc
     6061 atcagcagat tattgttggt catctgacca tccgttttga tggcgtgctg cgcgacgttg
     6121 atcaaaccgt taaataccgc gcggcctttg tcgctgacga tagttttgtg caactgtcgg
     6181 ctgttacaaa aacctttatt gtgttccagc caggtacggg tatcacacac ctcgtttttc
     6241 accggcatcg ccaggctatt gatccgcagc gtgctgtttt cgccattgag ttgcgtactg
     6301 gtgttgtgtc gtaacactgc gccacccagc aggaaactat ggctaaatgc ggtggcatcc
     6361 tcagccagca acaaatcgtt atgagcaaag tggtgactga gcgggttttc aaacgccagc
     6421 ttgatatgct gcaagtgggc gttcgctgcg acattgatag tgaaccgtgc cccggtaaaa
     6481 tgacgagcat cattaaggct gacaaaatgt tcgatcaccg ttgcttcggc accttccgcc
     6541 agatccagat gatgccggta atgggcagtg ttcacctctt cacctgccac gccctgggtg
     6601 atatacatta acagcaatgg ctttgccggc cgttgaccgc gcttcacggc gatatgcgtc
     6661 acgctttgtg ccaggctttc cgtcaaatgc agaaacactt ccgcctgaat agcgtcgggt
     6721 aacccctgac ggtcgtcgtt aatgctcact tcatatccgc tgccttcaat tgcatcgctc
     6781 agcgcgggca cgtaacgtcc atcgacaaac accagccgca cggcgtctaa cgttaacgct
     6841 aaggcatcac gctgctgtgg ggatatctcc cccgcaatgc tgacaaactg gctattggtc
     6901 agcccttcca gcgacgtata tttccagttt tcatgtttac gtgtcggcag tccggtacgc
     6961 agcaattgtt gtaaatgctg ctgtgcttgc ggggagcgtt ttgtcccttc agcttcaaac
     7021 aagtgatgcc actgttgcag cgcgttactg ctgttcggta agccagccat aaccctgctc
     7081 ctccagttgt ttgaccaacg tgaaatcgcc ggatttcaca attcgtccct gatatagcac
     7141 atggacgtaa tcaggcttga tgtagtcgag aatgcgttgg tagtgcgtaa caatgatgaa
     7201 tgagcgcttg ccatcacgca gggagttcac gccatcggcg accactttta atgcgtcaat
     7261 atccagcccg gagtccgact catcaagaat gcataactcc ggttccagca ccgccatttg
     7321 caaaatatcg ttgcgctttt tctcgccgcc ggaaaaacca acgtttaccg aacgggttaa
     7381 taaatcttcc ggcatcttca ggagagcgat tttctcttcc atcaaatcct gaaaatcaaa
     7441 gcggtcgagc gtttcctggc cgcgatagct gcgcactgca ttaagtgccg tttgcaggaa
     7501 aaactggtta ctgacgcctg gaatctccac cggatactgg aaggccataa agatgccttc
     7561 gcctgcacga tcttccggcg acagtgcaag caaatctttg cctttgaact caaccgtgcc
     7621 gcccgtcact tcataatctt cgcgcccggc aagcgttgcc gataaggtac ttttgcccga
     7681 accgtttggc cccataatgg cgtgaacttc gccgggacga acggcgaggc ttaatccacg
     7741 caggatagct ttatcttcca cgctgacgtg taaatcttta atacttaaca tgtttattcc
     7801 ttatccgacg ctgtgttcaa gactgatcgc gaggagtttt tgtgcttcaa cggcaaattc
     7861 cagcggcagt tctgagaaca cgtctttgca gaaaccgtta acaatcatcg agatggcgtc
     7921 ttcttcgctg atcccgcgtt gcaggcagta aaacagttga tcttcaccaa tacgtgatgt
     7981 cgttgcctcg tgctccagtt gtgcgctgtt attgcgacat tcgacatacg ggaaggtatg
     8041 cgccccacaa ttagcgccaa tcagcattga gtcgcactga gtgaaattgc gcgcattggt
     8101 tgccgtcggc atgattttca ctaagccgcg ataactgttc tgactatgtc cggcagagat
     8161 ccctttcgag ataatggtcg atttggtgtt tttaccgatg tggatcatct tggtgccggt
     8221 atccgcttgc tgatgaccgc tggtcagcgc cactgagtaa aactcaccaa tggagttatc
     8281 gccgcgcaaa atgcagctgg gatatttcca cgtaatcgcg gacccggttt ctgattgcgt
     8341 ccatgacatt ttgctgtttt cgccttcgca caaagcacgc ttggtgacga agttgagaat
     8401 accgccggtg ttgttatcgc cagggaacca gttttgtacc gtggaatatt tcacctcggc
     8461 gtttttatgg atgatgactt ccaccactgc cgcgtgtaac tgatagctgt cacgcaccgg
     8521 agcggaacag ccttcaatgt agctgacgta gctgtcttcg tcggccacca gaatggtgcg
     8581 ctcaaactgc ccggtttttt ccgcgttaat gcgaaaatag gtggaaagtt ccatcgggca
     8641 gcgcacgcct ttaggcacat aaataaacgt accgtcagag gctaccgccg cattaagcgc
     8701 ggcaaagaag ttgtcattcc ccggcaccac ggtgccgaga tatttacgca ccagttccgg
     8761 gtgatcgtgg atcgcctcac caaaggaaca gaaaataatt ccctgctccg ccagtttttc
     8821 gcgataagta gtggcaaccg aaacagagtc gaaaatggca tccaccgcca cctctttgcc
     8881 ttcccgcacg ggaacgccca actgctcaaa cgccgcctcc acctctttac ttaaaaaggc
     8941 gttcgcgcca gtttgctgca ccgcgccagg ttcagacgcg caagtgtcgt cacaattacc
     9001 gcacgatggt gctgagtagt agctgtaatc ctgataattc agcttgtcgt agtgcgcttt
     9061 caaccagtgc ggttcttcca tctccagcca tgcgcgatag gcgtttagac gaaactccag
     9121 catccactcc ggctcattac gcttcgccga aattgcgcgc accacctctt cgtttatccc
     9181 ctttgccagc tcatcggtgg ctaactgggt gaagaatcct tctttataat tcagcgggcc
     9241 gccggtccag gttttgacat cgtcagttgc ttcagtatta cgagacatag taccgcctat
     9301 accccaaagc tttcgccaca gccacattca ttctgggctt tagggttgtg aaatttgaat
     9361 atctgattaa gtccttcacg aacgaaatcg acttccgtgc catcaataaa cggcatcgct
     9421 tgcagcggga caaacagctt cgcgccgtcg tgttcaaaca gcagatcgtc tttgtccggc
     9481 tcgctaacac tgtcgagcac atagccaaag cccgcgcagc ccgtttgctt cacgcctaaa
     9541 cgcacgccga ccatacccgg ctgctttgcc accagctcac ggatgtgtat cgccgctgcg
     9601 ggtgtcagcg ttaagccttg ccaggcgaaa tcttgtgggt taaaggttcc tgaatgcatg
     9661 tccatcgatt tacctcactt catcgctttc agcgtataac agcatgttgg tgataatgat
     9721 tatcagttca acccagcaaa cgcaggggct ttaccgtaaa acatgctttt tgcctgcttt
     9781 taataagcat agaccctgat gtgtgggtta acaggcacgc taagaattag cgtatctcat
     9841 tgttagataa tggttattat ctaaggagca ttaaggctgt gatgaaaaag aaaaagttgt
     9901 attaaaatga ctatttaaga gataggtaaa aaagtgcagc gttcagaaat aagaaaaccc
     9961 ttaagtctgt gcgacacagg cttaagggtt tctaccccat ccggcgctta tctccggcac
    10021 tctcagtggc ttagctcttg aaggggcgat aagaataatc tcataaagct aacccgccgt
    10081 tttaacacaa actgcgatta gtattatttt tgaacaatat caggcggtag ataagcagta
    10141 ttaagaaggt catcgaacct ggacggaggt taatccaggt cgatttggcg aacttgcggc
    10201 attaagtcag gatcaatgca cgcccagacg ccaggcaaag tagatttctt cttttaattc
    10261 agcagaagag agagtaagca ggtcagcaaa ttcaagttct agttgtttca gacgtttgag
    10321 atattgggca ggtgaaagat tgctctggtc acggcgtaaa aattcaatgg ccagctgggt
    10381 gggatcaagt tgagtagaca tagcatcctc gcttttagac aagacgtgta cagtatacca
    10441 ccgtttactg tgcagataat gaccaaaagc aatatgcgtc acacttttct ggtgacaacg
    10501 tcacaaaatg gcggtcgtca atcgtgacga acagcacaaa cgccctttct catcgaagat
    10561 ttcaatctgc cagacctggt gacgcgaacc gagatgcaac ggtttacata tgccgcgcac
    10621 ccgcccttct cgtgccgagc ggacgtgatt agcattgatt tccagaccaa ccactttttg
    10681 ctcaccttcg gtacataaat aaccggcaac ggaaccgata ctttcggcca gtaccacgga
    10741 tgctcctcca tgcagcaacc cgaaaggctg ctttgtccgc gagtctactg gcattgtcgc
    10801 ttcaagggtg tcatcaccaa tatgttcaaa gcgaatatcc aggaacccca ccatgtttcc
    10861 ttcacccata gcattcagtg cttccagggt gattttccgt ttccatatca tttaataatc
    10921 tccagtaaag cctgcacagg atggcgtacc cccgtgcctt caacccgttt tacctggcta
    10981 cggcaggaat atccggtcgc cagacagcgg ttacgcggca gtcgctgcat agcctgatgc
    11041 caggataact catagatccc gagcgaattt tcatggtttt tcgcttcatg tccgtaagtc
    11101 cctgccatgc cgcagcaacc cacgctgaca ttttccagtt tcgcgccaaa acgggcaaat
    11161 atcgcggccc attgtgctgg cgcacccggc aaggcggtaa cttcggtaca gtgaccaaag
    11221 aaataccatg attcaccgct gactgtagcc acaggctgtg actcaagtgc gcttgccagc
    11281 cattcattcg ccagtaagac gttaaactcg ccacgctcct cgcccagcgc cagtttatat
    11341 tcatcgcgat aacaaagtac cagcgccgga tcgacgccca ccattggcat acccagcttc
    11401 gccatacggt tgaggaaatc cgccgtcttt ttcgccgtct tcgcaaaacg attaagaaaa
    11461 cctttaatat gctgggcttt gccatttggc gaaaatggca gtaacacagg ctggaaacct
    11521 aatttttcga ccagacggac aaaatccgcc accacttgcg catcgtaata gctggtaaag
    11581 gggtcctgca ccaccaacac tgtgcgcgct ttctgctctg cattgagaga ttcaagctgt
    11641 tccagcgtca tgtttgccga gcgatgcccc accatttgtt gttgtagcga ggggaccgac
    11701 agcagcggca aatcaaccat gccgatatgt ttttccgaga gtttgcgcac cagcggctgg
    11761 ttaatgaaga agttaaaggt tttcggcgcg cgtgccatca gcggcgcgta gctctcgacc
    11821 gtagcgacga ggtggtcgcg cagcgggcgt aaataacggg tgtgatagag ctgcagaaaa
    11881 cgagagcgaa actccggcac atcaattttg atggggcaca gggtcgaaca cgctttacag
    11941 gccagacagc ccgacatcgc ctctttgact tcgtgtgaga agtcatattc gcctttattc
    12001 gcatgccagc tattgcgcgt gcgggcaatt aacgtccgca aactgacgcc ggattcaggc
    12061 agttcttgtt ccagtttgag tggatcaacg ccgcgatccg ccaacaaacg cagccattca
    12121 cgcaccagcg ttgcgcgccc tttcggtgaa tgaatccggt tctgggtgat cttcatcgac
    12181 ggacacatcg gactacgggc atcaaagttg aagcataaac cgttgccgtt acactccatc
    12241 gcaccgcgcc actgctggcg taccgcaatg gggatctgcc gatcgaatgt accgcgcttc
    12301 accgcgtcca ctttcatcat cggcgcatcg agaccttctg gcgggcaaat cttccctggg
    12361 ttgagtcggt tatgcgggtc aaatgccgct ttcactttgc gcagttctgc aaaaagttcc
    12421 tcaccgaaaa acgccgggct gtattcagcg cgaaaacctt tgccgtgctc gccccacaac
    12481 aaaccaccgt atttcgcagt cagcgccacc acgtcatcag agatttgctt catcaaaatc
    12541 tcttgttgag gatcgcacat atccagctct ggacggacgt gcaagacacc tgcgtcgacg
    12601 tgaccgaaca taccgtagct taagccgtgg ctgtcgagca gcgcgcgaaa ttcagcaata
    12661 taatccgcca ggtgttccgg cggtacgcag gtatcctcag caaacggaat tggcttagcg
    12721 gcacctttgg cattgccaag cagaccaacg gcttttttgc gcattgcata gatacgttca
    12781 acccccgcca gctcacggca cacctgccag ccgatgacac ctgcttgatg actggcgatc
    12841 agctcatcca accgcgcaca gagtgcattt acccgctcat caatcagcgc ctcatcatca
    12901 ccagcaaatt ccacaatgtt cagcccgagc atctcttggt caggcacatc ggtaatcaac
    12961 tcgctgacgg aatgccagac aatatcttcc cgcgccagat tcagcacttt tgagtccacc
    13021 gtctctaccg aaagcgcccg cgcctcaacc ataaacggcg cgttacgcag cgcagagtca
    13081 aaagagtcat atttgacgtt caccagacgg cgcactttag gcaagcgcgt aatatccagc
    13141 cgcgcttcgg taataaaggc cagcgtccct tctgaacccg tcagaatgcg cgtcaggtcg
    13201 aactcggtca tctcatcgtt aaagacatga cgcagatcgt aaccggtaag aaagcggtta
    13261 agtttgggga agttgtcgat aattaactgg cgttgctgac ggcaacgttg ataaaccgtg
    13321 ttataaattc gcccgattgt ggtattggat ttacccagcg tttccgccaa ttcgacgggt
    13381 aaaggttgcg tatcgagaac atcgcccccc aacaacaccg cgcgtacgcc aagtacgtga
    13441 tctgacgttt tgccatagac cagcgatccc tgaccggatg catcggtatt gatcatccca
    13501 ccgagcgttg cccggttgct ggtcgaaagt tccggcgcaa aaaagtagcc gaacggtttc
    13561 aggtactgat tgagttgatc ttttatcacc ccggcctcaa cgcgcaccca gccctcttca
    13621 gggttaattt cgatgatgcg gttcatatgg cgggacatat caacaataat cccctggttg
    13681 agcgcctgac cgttagtgcc ggtgccgccg ccgcgggggg taaagatcag cgatgaatag
    13741 cgttcctgcg cggcaagacg ggcgatcagc gccacatctg cggttgaacg cggaaatacc
    13801 accgcatcgg ggagaagttg gtaaatactg ttgtcggtcg acattgtcag acgatcggca
    13861 taacttgtcg ccgtatcgcc ggtaaaacct tgttgctcca gctcttgcaa aaaattaagc
    13921 accagttgaa cgacgccggg tgcctgagaa atctgtggaa tcattatatt gcccctttcc
    13981 tgcggtctgt gatgtaggtc gatacactat tctttcaggc ggctgcaata gcgcactgaa
    14041 aggtgatgtt tatttactct atggatttcg agttgcagga aggcggcaag cgagtgaact
    14101 ccaggagctt acaatagtaa gtgactgggg tgaacgaacg tagccgcagc acatgcaact
    14161 tgaaatacga cgagtaaatc gtttgcgtgt tgcctgagtt gttgtaccac atttttttct
    14221 aacacgccca tcagaattaa gggcagaatc ggcctgttaa aaaccgctga aattgctcat
    14281 cattatgcag gtgagtttcg cgtgttcacg tcgcgtcgac gatttgacgc acaaaaaagg
    14341 tgaaaagtag ttatggtaaa tgttcgtcag cccagggatg tcgcacaaat tctgctttcg
    14401 gtgctgtttt tagccatcat gattgtggca tgtctgtgga ttgttcaacc ctttattctc
    14461 ggctttgcat gggccggtac ggtggttatc gccacctggc cggtattgtt acgtttgcaa
    14521 aagatcatgt ttggccgccg ctctctcgcc gttctggtga tgacgctgtt attagtgatg
    14581 gtgtttatca tccctattgc tttgctggtt aacagtatcg tcgacggcag cggcccgcta
    14641 attaaagcca tttccagcgg cgacatgacg ttacccgatc tggcgtggct taataccatt
    14701 ccggtgattg gcgcgaagct gtatgcaggc tggcacaact tgctggatat gggggggacg
    14761 gcgatcatgg cgaaagtccg cccttatatt ggcaccacca ccacctggtt cgttgggcag
    14821 gcggcgcata tcgggcgctt tatggtgcat tgtgcgctga tgcttctctt cagtgccctg
    14881 ctgtactggc gcggtgaaca ggtggcacaa ggcattcgcc attttgcaac ccgtctggca
    14941 ggcgttcgcg gagatgccgc cgtactgctg gcggcacagg ctatccgcgc ggtggcgctg
    15001 ggtgtggtgg tgacggcgtt agtacaggca gtgcttggcg gtatcggcct cgccgtatcc
    15061 ggcgtacctt atgcaacgtt gctaacggtg ttaatgatcc tctcctgcct tgtccagctt
    15121 ggcccgttgc cggtactgat tccggcgatt atctggctct actggactgg cgataccacc
    15181 tggggaacgg tattgttagt gtggagcggt gtggttggca cgctggataa cgtcatccgc
    15241 ccaatgttaa ttcgcatggg tgccgattta ccgctgatcc tgatcctctc tggtgttatt
    15301 ggtggtttga ttgctttcgg gatgatcggt ctgtttattg gtccggttct gttagccgtt
    15361 tcctggcgtc tgtttgccgc gtgggtggaa gaagtcccgc cgccgacgga ccaaccggaa
    15421 gaaattctcg aagaacttgg cgaaatcgag aaaccgaata agtaatttct catcaggcgg
    15481 ctctgccgcc tgattgttaa cccccgctaa ttgatatttg cttgctcttc cccatatttt
    15541 cctgcttacc gccattcagc tggtagtacc tgtcgcaaat tctttacagt ttttaaacta
    15601 atgagacgaa tctgatcgac gcaaaaagtc cgtatgccta ctattagctc acggttataa
    15661 atcaacatat tgatttataa gcatggaaat cccctgagtg aaacaacgaa ttgctgtgtg
    15721 tagtctttgc ccatctccca cgatgggctt tttttaacat ttttccactt cgctacctcg
    15781 cccctcactc tttccaataa tgttgcacaa gatactgtga ctctcttcaa gccgtcagca
    15841 ggctgataat gttatttata ttttattgtt tatttcatgc agccattaca cgatgaacgc
    15901 ttatgaactc caggcactcc gacatatttt tgccatgact attgatgaat gcgcacctgg
    15961 attgcccaga ccggtgacag tgaaagctgg cgtcagtggg aaaatggcaa gtgtgccatt
    16021 cctgatcgtg tagtcgagca actgttggct atgcgtcagc aaagaaaaaa acatcttcat
    16081 gccatcatag agaaaataaa taaccgcatc ggcaacaaca ccatgcgttt tttccccgac
    16141 ttaaccgcat ttcaacgagt ctaccctgat ggcaatttta ttgactggaa gatctatcaa
    16201 tcggtagccg ctgaaggtaa tgctgttgaa aagcaaattc cccagccagt tggtggacgc
    16261 cagcgtagct aatgaattac cgcaaatgaa cagcaaaccg ttagtctggc tggaaggtgt
    16321 ttcatcggta ctgttcggtg tagccgcatt ctcgaccttt tatgtgattg tggtgtggat
    16381 gcccaaatat gcgatggctt ttgctggtat gtcagaagct gaggcattaa aaaccatctc
    16441 ttattacagt atgggctcgt tggtctgtgt ctttattttt gccgcactac tgaaaaaaat
    16501 ggtccggccc atctgggcta atgtatttaa ctctgcactg gcaacaataa cagcagccat
    16561 tatctatctg tacccttctc cactggtgtg taatgccggc gcctttgtta tcggtttctc
    16621 agcagctggc ggcattttac agctcggtgt ttcggtcatg tcagagtttt tcccaaaaag
    16681 caaagccaaa gtcaccagta tttatatgat gatgggtgga ctggctaact ttgttattcc
    16741 gctgattacc ggttatctgt cgaacatcgg ccttcaatat atcattgttc tcgattttac
    16801 tttcgcgctg ctggccctga ttaccgcaat tattgttttt atccgctatt accgcgtttt
    16861 tattattcct gagaatgatg tgcggtttgg cgagcgtaaa tttagcaccc ggttaaacac
    16921 aattaagcat agaggttaaa ggagttaatt atggatgtta ccgcaaaata cgaattgatt
    16981 gggctgatgg cctatcctat ccgccacagt ttatcgcctg aaatgcagaa taaagcctta
    17041 gaaaaagcgg gattgccatt tacctatatg gcctttgaag tggataacga tagttttccc
    17101 ggagcaattg aaggattaaa agctctaaaa atgcgcggaa ctggtgtatc aatgccgaac
    17161 aaacaactgg cttgttaata tgttgatgaa ttaacgccag cagccaaact ggtgggtgcc
    17221 atcaacacca tcgttaatga tgatggctac ctgcgcggct ataacaccga cggcacgggc
    17281 catattcgcg ccattaaaga gagcggtttt gatatcaaag gcaaaacaat ggtgctgtta
    17341 ggggccggag gtgcctcaac ggctattggc gcgcaggggg caattgaagg tttaaaagaa
    17401 attaaactct ttaaccgtcg ggatgagttc ttcgataaag ccctcgcctt cgcgcagcgg
    17461 gttaacgaaa acaccgattg tgtcgtcacg gttaccgatc tcgccgatca gcaagccttt
    17521 gctgaagccc tggcttccgc cgacatttta accaatggca caaaagtggg tatgaaaccc
    17581 cttgagaatg aatcattagt taatgatatc agtctgttac atccgggact tctggtcact
    17641 gaatgcgtgt ataacccgca tatgacgaag ttattgcagc aggcgcaaca agctggttgc
    17701 aaaacgattg atggatacgg catgttgttg tggcaagggg ctgaacagtt cacgttatgg
    17761 actggcaaag atttccctct ggaatatgtt aaacaggtca tggggttcgg tgcctgacag
    17821 gctgaccgcg tgcagaaagg gtaaaaaaat gaaaaccgta actgtaaaag atctcgtcat
    17881 tggtacgggc gcacctaaaa tcatcgtctc gctgatggcg aaagatatcg cccgcgtgaa
    17941 atccgaagct ctcgcctatc gtgaagcgga ctttgatatt ctggaatggc gtgtggacca
    18001 ctttgccgac ctctccaatg tggagtctgt catggcggcg gcaaaaattc tccgcgaaac
    18061 catgccagaa aaaccgctgc tgtttacctt ccgcagtgcc aaagaaggcg gcgagcaggc
    18121 gatttccacc gaggcttata ttgctctcaa tcgtgcagcc atcgacagcg gcctggttga
    18181 tatgatagat ctggagttat ttaccggcga tgatcaggtt aaagaaaccg tcgcctgcgc
    18241 ccacgcgcat gatgtgaaag ttgtcatgtc caaccatgac ttccataaaa cgccggaagc
    18301 cgaagaaatc attgcccgtc tgcgcaaaat gcagtccttc gacgccgata ttcctaagat
    18361 tgcgctgatg ccgcaaagta ccagcgatgt gctgacgttg cttgccgcga ccctggagat
    18421 gcaggagcag tatgccgatc gtccaatcat cacaatgtca atggcaaaaa ctggcgtaat
    18481 ttctcgtctg gctggtgaag tatttggctc ggcggcaact tttggtgcgg taaaaaaagc
    18541 ctctgcgcca gggcaaatct cggtaaatga tttacgcaca gtattaacta ttttacatca
    18601 ggcataagca ataatatttc ggcgggaata tcctcccccg ccgaactaaa aaaaatatat
    18661 tcaaccgtat ttaataaaaa tatttcgtga gtctctgtgc gctaaatatc catctggcgt
    18721 agggaaaatc acacctgaat cagaaattaa caatgaaacc tgtaaaacca cctcgtatta
    18781 atggacgagt gccggtcctg tcggcacagg aagcggtgaa ttatattccc gacgaagcaa
    18841 cactttgtgt gttaggcgct ggcggcggta ttctggaagc cacgacgtta attactgctc
    18901 ttgctgataa atataaacag actcaaacgc cacgtaattt atcgattatt agtccaacag
    18961 ggcttggcga tcgcgccgac cgtggtatta gtccgctggc gcaagaaggt ctggtgaaat
    19021 gggcattatg tggtcactgg ggacaatcgc cgcgtatttc tgaactcgca gaacaaaata
    19081 aaattattgc ttataactat ccacaaggtg tacttacaca aaccttacgc gccgccgcag
    19141 cccaccagcc tggtattatt agtgatattg gcatcgggac atttgtcgat ccacgccagc
    19201 aaggcggcaa actgaatgaa gtcacgaaag aagacctgat taaactggtc gagtttgata
    19261 acaaagaata tctctattac aaagcgattg cgccagatat cgccttcatt cgcgctacca
    19321 cctgcgacag tgaaggctac gccacttttg aagatgaggt gatgtatctc gacgcattgg
    19381 ttattgccca ggcggtgcac aataacggcg gtattgtgat gatgcaggtg cagaaaatgg
    19441 ttaagaaagc cacgctgcat cctaaatctg tccgtattcc gggttatctg gtggatattg
    19501 tggtggtcga tccggatcaa agccaactgt atggcggtgc gccggttaac cgctttattt
    19561 ctggtgactt cacccttgat gacagcacca aacttagcct gcccctaaac caacgtaaat
    19621 tagttgcgag gcgtgcatta ttcgaaatgc gtaaaggcgc ggtggggaat gtcggcgtcg
    19681 gtattgctga cggtattggc ctggtcgccc gggaagaagg ttgtgctgat gactttattc
    19741 tgacggtaga aacaggtccg attggcggaa ttacttcaca ggggatcgcc tttggcgcga
    19801 acgtgaatac ccgtgccatt ctggatatga cgtcccagtt taatttttat cacggtggtg
    19861 gtctggatgt ttgttatttg agttttgctg aagtcgacca gcacggtaac gtcggcgtgc
    19921 ataaattcaa tggcaaaatc atgggtaccg gtggatttat tgatatcagt gccacctcga
    19981 agaaaattat tttctgcggc acgttaaccg cgggcagttt aaaaacagaa attgccgatg
    20041 gcaaattaaa tatcgtccag gaagaacggg tgaagaaatt tattcaggaa ctaccggaaa
    20101 ttacttttag cggaaaaatc gcgctcgaac gggaactgga tgttcgttac atcaccgaac
    20161 gtgctgtatt cacgctgaaa gaagacggcc tgcatttaat cgaaatcgcc cctggcgtcg
    20221 atttacaaaa agatattctc gacaaaatgg atttcacccc agtgatttcg ccagaactca
    20281 aactgatgga cgaaagatta tttatcgatg cggcgatggg ttttgtcctg cctgaagcgg
    20341 ctcattaaca ggagtatcac gatggatttt tctttaactg aagaacaaga actgctgctg
    20401 gccagtattc gcgaactgat tacgactaac tttgcggaag agtatttccg cacctgcgat
    20461 caaaacggga catatccgcg tgagtttatg cgggcgctgg cggataacgg catttctatg
    20521 cttggcgtgc cggaagagtt cggtggcatc cctgcggatt acgtcaccca gatgctggcg
    20581 ctgatggaag tgtcaaaatg cggtgctccg gcatttttga ttaccaacgg tcaatgtatt
    20641 cacagtatgc gccgtttcgg ttctgcagag cagctacgta aaacggcaga gagcaccctg
    20701 gaaacgggtg atcccgccta tgccctggcg ttgacggagc caggcgcagg ctcagacaac
    20761 aacagtgcca ctaccactta cacgcgtaaa aacggcaagg tttacatcaa cggacagaaa
    20821 acctttatta ccggtgcgaa agagtacccg tatatgctgg tgttggcgcg cgatccgcaa
    20881 ccgaaagatc ccaaaaaagc cttcaccctg tggtgggtcg actccagtaa gcccggcatt
    20941 aagattaacc cgctgcataa aatcggctgg catatgctca gcacctgcga agtctatctc
    21001 gacaacgtgg aggttgaaga gagcgacatg gtgggcgaag aaggaatggg tttcctcaat
    21061 gtgatgtaca actttgagat ggagcgcctg atcaacgccg cgcgcagcac cggctttgcc
    21121 gaatgcgcct ttgaagatgc cgcccgctat gccaaccaac gtatcgcttt tggtaagccc
    21181 attggtcata accagatgat ccaggaaaaa ctggcgctga tggcgattaa gatcgacaac
    21241 atgcgcaaca tggtgctgaa agtggcatgg caagccgatc agcatcagtc actgcgcacc
    21301 agcgcggcgc tggcaaaact gtattgcgca cgtaccgcaa tggaagtcat tgatgatgcg
    21361 attcaaatca tgggcggtct gggctatacc gatgaagcgc gcgtctcccg cttctggcgt
    21421 gatgtccgtt gtgaacgtat cggcggcggt acagacgaaa ttatgattta cgtagcaggt
    21481 cggcagatcc tgaaagacta tcagaacaaa taatctgcag gcggcgcagc ttcttaacaa
    21541 actgcgccgc cagatttatc caacaagact taccggttga ggaaattcag ataggatttc
    21601 ttgttccgca aaacagtttt taaattgtct acggtaatcg ctgggcgaac aaccgacatg
    21661 gcgcaaaaac agtttggcaa agtgatcgac attttcataa cccacacgcc aggagatctc
    21721 tgcctgtgat aattcagtat tagtgagtga ccattttgct tccgtcatac gccgttgaat
    21781 aacatagtta ataggggaaa tacgatactc tttggtaaat tcatggcaaa tataactgac
    21841 gctggcacga aattttttcg ataactgttc taaagtgatt ttttcgcgat aattattact
    21901 cagatagaaa agaatatctt ttatcagaac atctttttta atatacccct gctccgaacg
    21961 ataagcattt ttaaaatttt cgtagtaaag aatggctaac gtataggcaa atgcatccca
    22021 taacgaagat gtttggctat ttttactttg cggcaaaatc acacttagct cattaaataa
    22081 ggtttttatg acttcttttc cctgccccgc ggcaattacc ggacaagaat gcggttgcag
    22141 tagctgattt tcctcagccc cctgaaactg aaagccgtac agcgcacagg tacacgtcgt
    22201 tgccggatcg ttaacgtcag aggccaccgc atgcagcctg ccgcgttcta tcaccacaat
    22261 gtcatccgca tgtgcgacat ataacgaaga atcgatggta aaccttgcaa cccctttctt
    22321 gacgtaaatc aactcggttt cattgtcatg aacgtgatgt ccggactccc attttggatc
    22381 atcgctaaat gcaaaacgtg aaagccgtgg cgttttaccg gcgacaaaca gcgtttcact
    22441 ggcgttatca aaacagcgtt gatacatgac aacctcccta ttccatgagc aagcaaaaac
    22501 aatatatgcc ggataaaata cggcgtgtat tgcggttata caaccgcgtt tagcgagagc
    22561 taaacaagat tatttacact gaatgcaaga ttgtacggtc atggaataac tatattgccg
    22621 caaattgcac ttttgtttta gcgatcgcat ttttttgcaa gattgttggc aaggaaaaca
    22681 gcttgctccg tcgaaaaccc ccaccgctat cgcacactat tttcaggcca tttttacctt
    22741 ccatcggaga tggttccgta tgcgactcac aggagaaatc atgaaaataa taacctgctt
    22801 taagctggtg cctgaagaac aggacattgt tgtcactcca gaatacaccc tgaatttcga
    22861 caatgccgac gccaaaatca gccagttcga tctcaatgcc attgaagctg caagccagct
    22921 cgcaacagat gacgatgaga tagccgcgct gaccgttggc ggctcattgt tgcagaactc
    22981 gaaagtgcgc agtgcgcaaa gatgtgctat cccgcgggcc gcacagcctg tatttggtgc
    23041 aggatgcgca acttgaacat gcactgcctc tcgataccgc aaaagcgctg gcggcagcaa
    23101 ttgaaaagat cggcttcgat ttactgatct ttggtgaagg ttccggcgac ctttatgccc
    23161 agcaggttgg cttgctggtc ggagaaattc tgcaacttcc ggtgattaat gcagtgagtg
    23221 ctattcagcg tcagggtaat acactggtga ttgaacgcac gcttgaagat gatgttgaag
    23281 ttattgaact ctctgttcca gccgtgctct gcgtcacctc cgatattaac gtgccacgca
    23341 ttccttcgat gaaagccatt ctcggcgcgg gtaaaaaacc ggtaaatcag tggcaggcaa
    23401 gtgatattga ctggagccag agcgcgccac ttgctgaact ggtcggcatt cgcgtaccgc
    23461 cgcaaacaga acgtaagcac atcattatcg ataacgattc gccggaggcc attgccgagc
    23521 tggcggaaca tctgaagaaa gccctgaact gaagcctacg gagaagaaac gatgagtcaa
    23581 ttaaacagcg tctgggtctt tagcgataat cctgaacgtt atgctgaact gtttggcggc
    23641 gctcagcaat ggggccaaca ggtgtatgcc attgtacaaa ataccgacca ggcgcaggca
    23701 gttatgcctt atggtccaaa atgtatttat gttcttgagc aaaacgacgc gctgcaacgc
    23761 actgaaaatt acgccgaaag cattgctgcc ccgctgaaag ataaacaccc cgctatgttg
    23821 ctgttggccg cgacgaaacg tggtaaagct ctggcagcac ggttaagtgt gcaactgaat
    23881 gcggcgctgg tgaacgatgc cacggcggtg gatattgtcg atggtcacat ttgcgccgaa
    23941 caccggatgt atggcgggtt agcgttcgct caggaaaaga tcaacagccc gctggcgatc
    24001 attacccttg cacccggtgt tcaggaaccg tgcaccagtg atacctctca tcagtgcccg
    24061 acagaaacgg taccttatgt tgctccgcgt catgaaattc tctgtcgcga acgccgtgcg
    24121 aaagccgcaa gcagcgtgga cctgagcaaa gcaaaacgtg tggttggcgt cggtcgtggt
    24181 ctggcggcgc aggatgacct gaaaatggtc cacgaactgg cggcggtgct gaatgctgaa
    24241 gtcggctgtt cacgtccaat tgccgaaggc gagaactgga tggagcgtga acgttatatc
    24301 ggtgtctccg gcgtgttgct gaaatccgat ctctacctga cgctggggat ctccgggcag
    24361 atccagcata tggttggcgg caacggcgca aaagtgattg tcgccatcaa taaagataaa
    24421 aatgcgccaa tcttcaatta tgccgactac ggtctggtgg gcgatatcta caaagtcgtc
    24481 cctgccctga ttagccagtt gagccgctaa ttcccctttc aaccacatct cccgctgtaa
    24541 aggcagcggg aagggagcat aacgcatgtc ggatgacaaa tttgatgcca ttgtggtcgg
    24601 tgcggacgtt gctagtagcg ttgccgcact ggtcatggcg cgagccggac tggatgtcct
    24661 ggtgatagaa cgcggcgaca gtgccggatg taaaaacatg accggcgggc gtctttatgc
    24721 ccacacactt gaagcaatca ttccaggctt tgcagtatca gcgccggtag aacgcaaggt
    24781 cacacgcgag aaaatctcct tcttaaccga agaaagcgcc gttaccctcg attttcaccg
    24841 cgagcaacca gatgttccgc aacacgcatc ttataccgta ttgcgtaatc gtctggaccc
    24901 gtggttgatg gaacaagccg agcaggcggg cgcacagttt atcccgggcg ttcgcgtcga
    24961 tgcgttggtt cgtgaaggaa acaaggtcac tggcgtgcag gccggggatg atattctcca
    25021 agcgaatgtg gtggttctag ctgatggcgt aaactcgatg cttggccgct cgctgggaat
    25081 ggttcccgct tccgatccgc atcattacgc tgttggtgtt aaagaggtta ttggcctcac
    25141 accagaacag atcaacgatc gctttaatat tacgggcgag gaaggtgccg cctggctgtt
    25201 tgccggctcc ccttctgacg gcctgatggg cgggggattt ctctatacca acaaggattc
    25261 catatccttg gggctggttt gtggattggg tgatatcgcc catgcgcaaa aaagcgtgcc
    25321 gcaaatgctg gaagatttta aacaacaccc cgccattcgc ccactaatta gcggcggcaa
    25381 actgcttgaa tattccgcgc atatggtgcc agaaggcggt ctggcaatgg tgccgcagat
    25441 ggttaacgat ggcgtgatga tcgttggtga cgccgcaggc ttctgcctga atttgggttt
    25501 tacagttcgt ggcatggatt tagccattgc atcggctcag gctgccgcca caacggtgat
    25561 cgccgccaaa gaacgcgagg atttctccgc cagcagtctg gcgcaataca aacgtgagct
    25621 ggaacaaagc tgcgtcatgc gcgatatgca gcatttccgc aagatcccgg cgctgatgga
    25681 aaacccgcgc ctgtttagcc aatactcacg aatggtcgcc gacatcatga acgagatgtt
    25741 caccattgac ggcaaaccaa accagccggt acgcaaaatg atcatgggac acgcgaagaa
    25801 aattgggctg atcaacttgc tgaaagatgg cattaaggga gcaaccgcgc tatgagccag
    25861 aacgctacgg ttaacgtcga catcaaatta ggcgtcaata aattccatgt tgatgagggc
    25921 cacccgcata tcattctggc ggcaaatccc gatatcaatg aattccgtaa attaatgaaa
    25981 gcttgccctg ccggacttta taagcaggat gacgccggca acattcattt cgattccgcc
    26041 ggttgtctgg agtgcggcac ctgtcgggtg ctgtgcggca acactattct cgaacagtgg
    26101 caatatcccg caggcacctt cggtattgat tttcgctacg gctaatcatg catcccacag
    26161 gcccgcatct cgggcctgat gttctgtttc gagagtccaa aatgaaagtg acattaacgt
    26221 tcaacgaaca acgtcgtgcg gcgtatcgtc agcaagggtt atggggcgat gcttcactgg
    26281 ccgattactg gcagcagacc gctcgtgcga tgccagacaa aattgccgtg gtcgacaatc
    26341 atggtgcaac gtacacctat agcgcgctcg atcacgccgc gagctgtctg gcaaactgga
    26401 tgttagcgaa gggtattgaa tcaggcgatc gcatcgcatt tcaactgcct ggctggtgtg
    26461 aatttaccgt tatctatctt gcctgcctga aaatcggtgc ggtttccgtg ccgctgttgc
    26521 cttcctggcg ggaagcagaa ctggtgtcgg tgctcaataa gtgtcaggca aaaatgttct
    26581 ttgcaccgac gttgtttaaa caaacacgtc cggtagattt aatcctgccg ctgcaaaatc
    26641 agcttccaca actacaacaa attgtcggcg tggacaaact ggctcccgcc acctcttccc
    26701 tctcattaag tccgattatc gccgacaata cctcactgac cacggcgata acgacccacg
    26761 gcgatgaatt agctgcggtg ctgtttacct ccggaaccga gggtctgcca aagggcgtga
    26821 tgctaacgca taacaatatt ctcgccagtg agcgggctta ttgcgcgcga ctgaatctga
    26881 cctggcagga tgtctttatg atgcctgcgc cacttggtca cgcaacgggc tttctgcatg
    26941 gcgtaacggc accattctta attggcgctc gcagcgtgtt gttagatatt ttcactcctg
    27001 atgcgtgtct cgcgctgctt gagcagcagc gttgcacctg tatgctaggc gcaacgccgt
    27061 ttgtctatga tcttttgaat gtactagaga aacaacccgc ggacctttca gcgctgcgtt
    27121 tctttctttg cggcggtacc acaatcccca aaaaagtggc acgtgaatgc cagcagcgcg
    27181 gcattaaatt attaagtgtt tatggttcca cagaaagttc gccgcatgcg gtggtgaatc
    27241 tcgatgatcc tttgtcgcgc tttatgcaca ccgatggtta cgctgccgca ggtgtagaga
    27301 ttaaagtggt cgatgacgca cgcaagacct taccgccagg ttgcgaaggt gaagaagcct
    27361 cgcgtggccc caatgtgttt atggggtatt ttgatgaacc tgaattaacc gcccgtgcgc
    27421 tggacgaaga aggctggtat tgcagcggcg atctctgccg tatggatgag gctggctata
    27481 taaaaattac cggacgcaaa aaagatatta ttgtccgcgg cggcgaaaat attagcagcc
    27541 gtgaagtgga agatatttta ttgcagcatc ctaaaattca cgatgcctgt gtggttgcaa
    27601 tgcccgatga acgtttaggt gaacgatcat gcgcttatgt cgtgctgaaa gcgccgcatc
    27661 attcattatc gctgg
//
LOCUS       DAJVSY010000039        27619 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.039, whole genome shotgun sequence.
ACCESSION   DAJVSY010000039 DAJVSY010000000
VERSION     DAJVSY010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27619)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27619)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27619
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.039"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(174..704)
                     /gene="ppa"
                     /locus_tag="OQQ19_001517"
     CDS             complement(174..704)
                     /gene="ppa"
                     /locus_tag="OQQ19_001517"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001739810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HCS1803185.1"
                     /translation="MSLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDR
                     FMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGE
                     DAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAE
                     AAKAEIVASFERAKNK"
     gene            1014..1970
                     /gene="ytfQ"
                     /locus_tag="OQQ19_001518"
     CDS             1014..1970
                     /gene="ytfQ"
                     /locus_tag="OQQ19_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactofuranose ABC transporter
                     substrate-binding protein YtfQ"
                     /protein_id="HCS1803186.1"
                     /translation="MWKRLLVVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNV
                     AKSEAEKRGITLKIADGQQKQENRIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKD
                     AEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVG
                     ASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYA
                     HNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMIDGEANASVELTPNMAGPA
                     FDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKNMGY"
     gene            2110..3612
                     /locus_tag="OQQ19_001519"
                     /pseudo
     CDS             2110..3612
                     /locus_tag="OQQ19_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026286.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
     gene            3626..4648
                     /locus_tag="OQQ19_001520"
     CDS             3626..4648
                     /locus_tag="OQQ19_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313234.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1803187.1"
                     /translation="MPQSLPDTTTPKRRFRWPTGMPQLVALLLVLLVDSLVAPHFWQV
                     VLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVA
                     EVSLPIVLLSALGTGILAGLWNGILVAILKIQPFVATLILMVAGRGVAQLITSGQIVT
                     FNSPDLSWFGSGSLLFLPTPVIIAVLTLLLFWLLTRKTALGMFIEAVGINIRAAKNAG
                     VNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAILAVVIGGGSLMG
                     GRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQRFISLIKGV
                     RSRDKT"
     gene            4635..5630
                     /gene="yjfF"
                     /locus_tag="OQQ19_001521"
     CDS             4635..5630
                     /gene="yjfF"
                     /locus_tag="OQQ19_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease YjfF"
                     /protein_id="HCS1803188.1"
                     /translation="MIKRNLPLMITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAF
                     LGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVVGDFGLSPLLAFPLVLVMGCAFG
                     AFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGG
                     RLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLST
                     GLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQG
                     LIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQSSPVTRVNIAQR"
     gene            complement(5663..6661)
                     /gene="fbp"
                     /locus_tag="OQQ19_001522"
     CDS             complement(5663..6661)
                     /gene="fbp"
                     /locus_tag="OQQ19_001522"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016233757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HCS1803189.1"
                     /translation="MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAG
                     LVDILGASGAENVQGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEH
                     AKYVVLMDPLDGSSNIDVNVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVV
                     YGSSTMLVYTTGCGVHAFTYDPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFPNGVK
                     KYIKFCQEEDKSTNRPYTSRYIGSLVADFHRNLLKGGIYLYPSTASHPDGKLRLLYEC
                     NPMAFLAEQAGGKASDGKERILDIIPETLHQRRSFFVGNDHMVEDVERFIREFPDA"
     gene            6837..8210
                     /gene="mpl"
                     /locus_tag="OQQ19_001523"
     CDS             6837..8210
                     /gene="mpl"
                     /locus_tag="OQQ19_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HCS1803190.1"
                     /translation="MRIHILGICGTFMGGLAMLARQLGHEVTGSDANVYPPMSTLLEK
                     QGIELIQGYDASQLDPQPDLVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRD
                     RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEAD
                     EYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRII
                     WPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSLV
                     GEHNMHNGLMAIAAARHVGVAPADTANALGSFINARRRLELRGEANGVTVYDDFAHHP
                     TAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGRADEVFLLQPAHI
                     PWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNGGFGGIHQKLLDGLA
                     KKAEAAQ"
     gene            complement(8293..8844)
                     /locus_tag="OQQ19_001524"
     CDS             complement(8293..8844)
                     /locus_tag="OQQ19_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein"
                     /protein_id="HCS1803191.1"
                     /translation="MTKQPEDWLDDVPGDDIEDEDDEIIWVSKSEIKRDAEELKRLGA
                     EIVDLGKNALDKIPLDADLRAAIELAQRIKMEGRRRQLQLIGKMLRQRDVEPIRQALD
                     KLKNRHNQQVVLFHKLENLRDRLIDQGDDAIAEVLNLWPDADRQQLRTLIRNAKKEKE
                     GNKPPKSARQIFQYLRELAENEE"
     gene            8938..10290
                     /gene="pmbA"
                     /locus_tag="OQQ19_001525"
     CDS             8938..10290
                     /gene="pmbA"
                     /locus_tag="OQQ19_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HCS1803192.1"
                     /translation="MALAMKVISQVEAQRKILEEAVSTALELASGKSDGAEVAVSKTT
                     GISVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAALDIARY
                     TSPDPCAGVADKELLAFDAPDLDLFHPAEVSPDEAIELAARAEQAALQADKRITNTEG
                     GSFNSHYGVKVFGNSHGMLQGYCSTRHSLSSCVIAEENGDMERDYAYTIGRAMSDLQT
                     PEWVGVDCARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGSVYRKSTFL
                     LDSLGKQILPDWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGILTQWLLTSYSA
                     RKLGLKSTGHAGGIHNWRIAGQGLSFEQMLKEMGTGLVVTELMGQGVSAITGDYSRGA
                     AGFWVENGEIQYPVSEITIAGNLKDMWRNIVTVGNDIETRSNIQCGSVLLPEMKIAGQ
                     "
     gene            10474..10860
                     /gene="cybC"
                     /locus_tag="OQQ19_001526"
     CDS             10474..10860
                     /gene="cybC"
                     /locus_tag="OQQ19_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313240.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b562"
                     /protein_id="HCS1803193.1"
                     /translation="MRKSLLAILAVSSLVFSSASFAADLEDNMETLNDNLKVVEKADN
                     AAQVKDALTKMRAAALDAQKATPPKLEGKSPDSPEMKDFRHGFDILVGQIDDALKLAN
                     EGKVKEAQAAAEQLKTTRNAYHQKYR"
     gene            complement(10905..11369)
                     /gene="nrdG"
                     /locus_tag="OQQ19_001527"
     CDS             complement(10905..11369)
                     /gene="nrdG"
                     /locus_tag="OQQ19_001527"
                     /EC_number="1.97.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate
                     reductase-activating protein"
                     /protein_id="HCS1803194.1"
                     /translation="MNYHQYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRVNSG
                     QPFTKAMEDQIINDLNDTRIKRQGISLSGGDPLHPQNVPDILKLVQRIRAECPGKDIW
                     VWTGYKLDELNAAQMQVVDLINVLVDGKFVQDLKDPSLIWRGSSNQVVHHLR"
     gene            complement(11559..13697)
                     /gene="nrdD"
                     /locus_tag="OQQ19_001528"
     CDS             complement(11559..13697)
                     /gene="nrdD"
                     /locus_tag="OQQ19_001528"
                     /EC_number="1.17.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HCS1803195.1"
                     /translation="MTPHVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAA
                     VVSEQMQGRNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEI
                     RGLVEQTNASLLNENANKDSKVIPTQRDLLAGIVAKHYARQHLLPRDVVQAHERGDIH
                     YHDLDYSPFFPMFNCMLIDLKGMLTQGFKMGNAEIEPPKSISTATAVTAQIIAQVASH
                     IYGGTTINRIDEVLAPFVTASYNKHRKTAEEWNIPDAEGYANSRTIKECYDAFQSLEY
                     EVNTLHTANGQTPFVTFGFGLGTSWESRLIQESILRNRIAGLGKNRKTAVFPKLVFAI
                     RDGLNHKKGDPNYDIKQLALECASKRMYPDILNYDQVVKVTGSFKTPMGCRSFLGVWE
                     NENGEQIHDGRNNLGVISLNLPRIALEAKGDEATFWKLLDERLVLARKALMTRIARLE
                     GVKARVAPILYMEGACGVRLNADDDVSEIFKNGRASISLGYIGIHETINALFGGEHVY
                     DNEQLRAKGIAIVERLRQAVDQWKEETGYGFSLYSTPSENLCDRFCRLDTAEFGVVPG
                     VTDKGYYTNSFHLDVEKKVNPYDKIDFEAPYPPLANGGFICYGEYSNIQHNLKALEDV
                     WDYSYQHVPYYGTNTPIDECYECGFTGEFECTSKGFTCPKCGNHDASRVSVTRRVCGY
                     LGSPDARPFNAGKQEEVKRRVKHLGNGQIG"
     gene            complement(14091..15746)
                     /gene="treC"
                     /locus_tag="OQQ19_001529"
     CDS             complement(14091..15746)
                     /gene="treC"
                     /locus_tag="OQQ19_001529"
                     /EC_number="3.2.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709962.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-phosphotrehalase"
                     /protein_id="HCS1803196.1"
                     /translation="MTNPPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVIQRLDYLHK
                     LGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMV
                     FNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYY
                     LHLFAPEQADLNWENPAVRAVLKKVCEFWADRGVDGLRLDVVNLISKDPRFPDDLDGD
                     GRRFYTDGPRAHEFLHEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFN
                     FHHLKVDYPGGEKWTLAKPDFVALKTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFG
                     DEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELR
                     NDGRDADELLAILASKSRDNSRTPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEAALA
                     DDSSVFYTYQKLIALRKQEAILTWGNYQDLLPNSPVLWCYRREWKGQTLLVIANLSRE
                     IQPWQPGQMRGNWQLVMHNYEEASPQPCAMNLRPFEAVWWLQK"
     gene            complement(15796..17217)
                     /gene="treB"
                     /locus_tag="OQQ19_001530"
     CDS             complement(15796..17217)
                     /gene="treB"
                     /locus_tag="OQQ19_001530"
                     /EC_number="2.7.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS trehalose transporter subunit IIBC"
                     /protein_id="HCS1803197.1"
                     /translation="MMSKINQTDIDRLIELVGGRGNIATVSHCITRLRFVLNQPANAR
                     PKEIEQLPMVKGCFTNARQFQVVIGTNVGDYYQALIASTGQAQVDKEQVKKAARQNMK
                     WHEQLITHFAETFFPLLPALISGGLILGFRNVIGDLPMSNGQTLAQMYPSLQTIYDFL
                     WLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEVWDF
                     GMFSIAKVGYQAQVIPALLAGLALGVIETRLKRIVPDYLYLVVVPVCSLILAVFLAHA
                     LIGPFGRMIGDGVAFAVRHLMTGSFAPIGAALFGFLYAPLVITGVHQTTLAIDLQMIQ
                     SMGGTPVWPLIALSNIAQGSAVIGIIISSRKHNEREISVPAAISAWLGVTEPAMYGIN
                     LKYRFPMLCAMIGSGLAGLLCGLNGVMANGIGVGGLPGILSIQPNYWQVFALAMAIAI
                     IIPIVLTSFIYQRKYRLGTLDIV"
     gene            complement(17318..18283)
                     /gene="treR"
                     /locus_tag="OQQ19_001531"
     CDS             complement(17318..18283)
                     /gene="treR"
                     /locus_tag="OQQ19_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001181347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator TreR"
                     /protein_id="HCS1803198.1"
                     /translation="MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSQRTRERVEAVMN
                     QHGFSPSRSARAMRGQSDKVVAIIVTRLDSLSENLAVQTMLPEFYEQGYDPIMMESQF
                     SPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQSSLVLLARDAKGFASVCYDDE
                     GAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAM
                     KQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPE
                     IVTVDPGYAEAGRQAACQLIAQVTGRSEPQQIIIPATLSRSFPER"
     gene            18468..18521
                     /gene="mgtL"
                     /locus_tag="OQQ19_001532"
     CDS             18468..18521
                     /gene="mgtL"
                     /locus_tag="OQQ19_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_003933616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mgtA regulatory leader peptide MgtL"
                     /protein_id="HCS1803199.1"
                     /translation="MEPDPTPLPRRRLKLFR"
     gene            18662..21358
                     /gene="mgtA"
                     /locus_tag="OQQ19_001533"
     CDS             18662..21358
                     /gene="mgtA"
                     /locus_tag="OQQ19_001533"
                     /EC_number="7.2.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium-translocating P-type ATPase"
                     /protein_id="HCS1803200.1"
                     /translation="MFKEIFTRLIRHLPSRLVHRDPLPGAQQTVNTVVPPSLSAHCLK
                     MAVMPEEELWKTFDTHPEGLNQAEVESAREQHGENKLPAQQLSPWWVHLWVCYRNPFN
                     ILLTILGAISYATEDLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVL
                     RVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARDLFVAQASLTGESLP
                     VEKAATTRQPEHSNPLECDTLCFMGTTVVSGTAQAMVIATGANTWFGQLAGRVSEQES
                     EPNAFQQGISRVSMLLIRFMLVMAPVVLLINGYTKGDWWEAALFALSVAVGLTPEMLP
                     MIVTSTLARGAVKLSKQKVIVKHLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDIS
                     GKTSERVLHSAWLNSHYQTGLKNLLDTAVLEGTDEESARSLASRWQKIDEIPFDFERR
                     RMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVTDTLNRQ
                     GLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKASGITVK
                     ILTGDSELVAAKVCHEVGLDAGEVVIGSDIETLSDDELANLAQRTTLFARLTPMHKER
                     IVTLLKREGHVVGFMGDGINDAPALRAADIGISVDGAVDIAREAADIILLEKSLMVLE
                     EGVIEGRRTFANMLKYIKMTASSNFGNVFSVLVASAFLPFLPMLPLHLLIQNLLYDVS
                     QVAIPFDNVDDEQIQKPQRWNPADLGRFMIFFGPISSIFDILTFCLMWWVFHANTPET
                     QTLFQSGWFVVGLLSQTLIVHMIRTRRVPFIQSCASWPLMIMTVIVMIVGIALPFSPL
                     ASYLQLQALPLSYFPWLVAILAGYMTLTQLVKGFYSRRYGWQ"
     gene            complement(21564..21950)
                     /gene="ridA"
                     /locus_tag="OQQ19_001534"
     CDS             complement(21564..21950)
                     /gene="ridA"
                     /locus_tag="OQQ19_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418664.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminobutanoate/2-iminopropanoate deaminase"
                     /protein_id="HCS1803201.1"
                     /translation="MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPA
                     DVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATF
                     PARSCVEVARLPKDVKIEIEAIAIRR"
     gene            complement(22023..22484)
                     /gene="pyrI"
                     /locus_tag="OQQ19_001535"
     CDS             complement(22023..22484)
                     /gene="pyrI"
                     /locus_tag="OQQ19_001535"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000148566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HCS1803202.1"
                     /translation="MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITI
                     GLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPER
                     IDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN"
     gene            complement(22497..23432)
                     /gene="pyrB"
                     /locus_tag="OQQ19_001536"
     CDS             complement(22497..23432)
                     /gene="pyrB"
                     /locus_tag="OQQ19_001536"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HCS1803203.1"
                     /translation="MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKV
                     IASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDA
                     IVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAM
                     VGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEE
                     VMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIAT
                     DVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL"
     gene            complement(23436..23570)
                     /gene="pyrL"
                     /locus_tag="OQQ19_001537"
     CDS             complement(23436..23570)
                     /gene="pyrL"
                     /locus_tag="OQQ19_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyr operon leader peptide"
                     /protein_id="HCS1803204.1"
                     /translation="MVQCVRHFVLPRLKKDAGLPFFFPLITHSQPLNRGAFFCPGVRR
                     "
     gene            complement(23850..24245)
                     /locus_tag="OQQ19_001538"
     CDS             complement(23850..24245)
                     /locus_tag="OQQ19_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HCS1803205.1"
                     /translation="MVERTAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSREDGT
                     PEPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPEKQFEDIMTVKNEIFSAP
                     SYPTWTAVGVTWLAGFDFEIKVIARIPEL"
     gene            complement(24376..25089)
                     /gene="bdcA"
                     /locus_tag="OQQ19_001539"
     CDS             complement(24376..25089)
                     /gene="bdcA"
                     /locus_tag="OQQ19_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1803206.1"
                     /translation="MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAA
                     ERLAQETGATAVFTDSADKDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRL
                     FKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGL
                     ARDFGPRGITINVVQPGPIDTDANPANGPMRDMSHSFMAIKRHGQPEEVAGMVAWLAG
                     PEASFVTGAMHTIDGAFGA"
     gene            25160..25753
                     /locus_tag="OQQ19_001540"
     CDS             25160..25753
                     /locus_tag="OQQ19_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313255.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HCS1803207.1"
                     /translation="MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTD
                     YLGINPPSLYAAFGNKAGLFSRVLNEYVGTEAIPLADILRDDRPVGECLAEVLKEAAR
                     RYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFM
                     STVMSGLSAKAREGHSIEQLCATAALAGEAIKTILKE"
     gene            25898..26350
                     /gene="tabA"
                     /locus_tag="OQQ19_001541"
     CDS             25898..26350
                     /gene="tabA"
                     /locus_tag="OQQ19_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin biofilm protein TabA"
                     /protein_id="HCS1803208.1"
                     /translation="MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRL
                     FYLISEDMTEPHEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAF
                     LPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPARVRKAVVKMLMA"
     gene            26473..27619
                     /locus_tag="OQQ19_001542"
                     /pseudo
     CDS             26473..27619
                     /locus_tag="OQQ19_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016234052.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
BASE COUNT         6623 a         6840 c         7304 g         6852 t
ORIGIN      
        1 tccagcaagt ggctatgaac agcaaaatgg tggtcgggtt tgcttgttct taccgttcaa
       61 gccttgcaac cgctgagaat aatgatggtg gaatagagag tttatttatc gcgggcataa
      121 aaaaaccctt actaaccgaa gcccggcgtt cagggttatt gcgctagaag aacttattta
      181 ttctttgcgc gctcgaagga agcaacgatt tcagctttag cggcttctgc gttttcccaa
      241 ccttcaactt tcacccactt gcctttttcg aggtctttgt agtgctcgaa gaagtgagcg
      301 atttgcgctt tcagcagttc aggcagatcg tttacgtctt taatgtgatc gtattctttg
      361 ctcagcttgc tgtgcggaac cgcaaccagt ttcgcatctt caccggcttc gtcggtcatt
      421 ttcagaacgc caaccggacg gcaacggatc acagaaccag gctgcagcgg gtacggagtc
      481 gggaccagta cgtcaaccgg gtcaccgtcc agagacaggg tgtggttgat gtaaccgtag
      541 ttgcacggat agaacatcgc ggtggacatg aagcggtcaa cgaacagtgc gccgctctct
      601 ttgtcgattt cgtatttgat cggatctgcg ttagccggga tctcaataac aacgtagatg
      661 tcttccggca gatctttacc cgcagggacg ttgagtaagc tcatgtctgt ttcctttaaa
      721 aatatgtggc aaacaagtgc cgagtattat agccaactcg cgccgaatgt ctttgcttgt
      781 tttcgtcttc attttccttt ttcgccagtt ttaagacggt atacagagca ggaaaatcca
      841 taaccgtagc cgcatttttc atagtgagat gaaagcgatt acaaacttgt gattaacgtt
      901 ttatttactt ttttgaagtg tgatgtaacg caatccgtta cataacgaat tgtctatagt
      961 tttttcgcga acatcttttc accaataata attaccccga cgaggacaac cctatgtgga
     1021 aacgcttact tgtagtctct gcagtctcgg cagccatgtc gtctatggcg ttggccgctc
     1081 cattaaccgt aggattttcg caggtcggat cggaatccgg ctggcgcgcc gcagaaacca
     1141 atgtggcgaa aagtgaggcc gaaaaacgcg gaattacgtt gaaaattgcc gatggtcagc
     1201 aaaagcagga aaaccggatt aaagcggtac gttccttcgt tgcacaaggg gtggatgcga
     1261 tctttatcgc tccagtggtt gcgacgggtt gggaaccggt attaaaagag gcgaaagatg
     1321 ccgaaatccc ggtcttcttg ctcgaccgtt ccatcgatgt gaaagacaaa tctctctata
     1381 tgaccaccgt tactgccgac aacatcctcg aaggtaagtt gatcggtgac tggctggtaa
     1441 aagaagtgaa tggcaaacca tgcaacgtgg tggagctgca gggcaccgtt ggggccagcg
     1501 tcgccattga ccgtaagaaa ggctttgccg aagccattaa gaatgcgcca aatatcaaaa
     1561 ttatccgctc gcagtcaggt gacttcaccc gcagtaaagg caaagaagtc atggagagct
     1621 ttatcaaagc ggaaaacaac ggcaaaaaca tctgcatggt ttacgcccat aacgacgaca
     1681 tggtgattgg tgcaattcag gcaattaaag aagcgggcct gaaaccgggc aaagatattc
     1741 tgacaggttc tatcgatggc gtaccggata tctacaaagc gatgattgat ggcgaagcga
     1801 acgccagtgt tgaactgacg ccgaatatgg cgggacccgc ttttgacgcg ctggagaaat
     1861 acaaaaaaga cggcaccatg cctgaaaagc tgacgttaac caaatccacc ctttacctgc
     1921 ctgataccgc aaaagaagag ttagagaaga agaaaaatat ggggtattga gggttgctat
     1981 gcctgatgcc gattcgtagg ccggataagg cgctcgcgcc gcatccggcg atggtgcact
     2041 gaagcctgat gcgacgctta ccgcgtctta tcatgcctac tgggagcacg ctttacaccg
     2101 ggggaaacca tgacgaccga ccaacaccag gaaatcctcc gcaccgaagg attaagtaaa
     2161 tttttccccg gcgtcaaagc gttagacaac gttgatttca gcctgcgccg tggcgaaatc
     2221 atggcgctgc tcggtgaaaa cggggcggga aaatcaacgc taatcaaagc attaactggt
     2281 gtataccacg ccgatcgcgg caccatctgg ctggaaggcc aggttatctc accgaaaaat
     2341 accgcccacg cgcaacaact cggcattggc accgtctatc aggaagtcaa cctgctaccc
     2401 aatatgtcgg tcgctgataa tctatttata ggccgcgaac ccaaacgctt cggccttcta
     2461 cgccgcaaag agatggaaaa gcgcgccacc gaactgatgg catcttacgg tttctccctc
     2521 gacgtgcgcg aaccgctcaa ccgcttttca gtcgcgatgc agcaaatcgt cgccatttgc
     2581 cgggctatcg atctctccgc caaagtgctg atcctcgatg aacccaccgc cagcctcgac
     2641 acctaggaag tggagctatt atttggcctg atgcgtcagt tgcgcgatcg cggcgtcagc
     2701 ctgatctttg tcactcactt tctcgatcag agctatcagg tcagcgatcg gatcaccgtt
     2761 ttacgcaacg gcagtttcgt aggctgtcgg gaaacgcgcg agctaccgca gatcgaactg
     2821 gtaaaaatga tgctggggcg cgagctggat acccacgcgc tacagcgtgc cgggcgaaca
     2881 ttgttgagcg acaaacccgt tgccgcgttc aaaaattacg gcaaaaaagg aacgatagca
     2941 ccgtttgatc tcgaagtgcg ccccggcgag atcgtcggcc tggcaggctt gctgggatcc
     3001 ggacgtaccg aaaccgccga agtgatcttc ggtatcaaac ctgctgacag cggcacggcg
     3061 ttgatcaaag gcaaaccgca aaacctgcga tcgccacatc aggcttcggt actgggcatc
     3121 ggcttctgcc cggaagacag gaaaaccgat ggcatcatcg ctgccgcctc ggtgcgggaa
     3181 aatatcatcc tcgctctcca ggcccagcgc ggctggctac gacctatttc ccgcaaagag
     3241 cagcaagaga ttgccgaacg ctttatccgc cagcttggca ttcgcacacc ttcaactgaa
     3301 caaccgattg aatttctctc cggcggcaat cagcaaaaag tgttgctttc acgttggcta
     3361 ctgacccgac cgcaatttct gatcctcgat gagccaaccc gtggcattga tgttggtgcc
     3421 cacgccgaga tcatccgcct gattgaaacg ctatgcgccg atggtctggc gctgctggtg
     3481 atctcctccg aactggaaga actggtgggc tatgccgacc gggtgatcat catgcgcgat
     3541 cgcaaacagg tggcggagat ccggctggca gagctttccg ttccggctat catgaacgcc
     3601 attgcggcgt aaggagaaca gtgtgatgcc tcaatctctt ccggacacca ctacgccaaa
     3661 aaggcgcttt cgctggccga cggggatgcc gcagctggta gcactattgc tggtgctgct
     3721 ggtcgacagc ctggtagccc cgcatttctg gcaggtagtg cttcaggatg ggcgtttgtt
     3781 cggtagcccc atagacattc ttaaccgtgc agcccccgtt gcgttactgg cgattggtat
     3841 gacgctggtg atcgccaccg gtgggattga tctctccgta ggggcggtga tggctatcgc
     3901 cggagccaca acggctgcga tgacggtcgc ggaagtcagc ctgccgattg ttttgttaag
     3961 cgccctaggc accggcatcc tggcgggatt gtggaacggc atactggtag cgatcctcaa
     4021 aattcagcca tttgtcgcca ccctgatcct gatggtcgcc gggcgcggcg tggcgcaact
     4081 gatcacctcc ggacagatcg tcacgtttaa ctcgccggat ctctcatggt ttggcagtgg
     4141 atcgctgttg ttcctgccaa cgccagtcat tattgcggta ctgacgcttc tcctgttctg
     4201 gctgttgacc cgcaaaacgg cactggggat gtttatcgaa gccgttggta tcaacattcg
     4261 ggcggcaaaa aatgccgggg taaacacgcg gatcatcgtc atgctcactt atgtgttgag
     4321 cgggctgtgt gcggcgattg cgggcattat cgtggcggcg gatattcgcg gtgccgatgc
     4381 caacaacgcc ggattatggc tggagctgga cgccattctc gcggtggtga ttggcggcgg
     4441 atcgctgatg ggcgggcgct ttaacctgct gctctcggta gtgggggcgc tgattattca
     4501 ggggatgaac accggaattt tgctttcggg ctttccaccg gagatgaacc aggtggtgaa
     4561 agcggtggtg gtgctttgcg tgctgattgt ccagtcgcaa cgctttatca gtctgattaa
     4621 aggagtacgt agccgtgata aaacgtaatt tgccactgat gatcaccatc ggcgtctttg
     4681 tgctgggcta tttctactgc ctgacgcagt ttcccggttt tgcttccaca agagtgatct
     4741 gcaatatcct gaccgataac gcttttctgg ggattattgc cgttggtatg acctttgtga
     4801 tcctctctgg cggtatcgat ctctccgtcg gttcggtgat cgcctttact ggcgtgtttc
     4861 tggcaaaagt ggttggcgat ttcggcctct cgccgctgct ggcgtttccg ctagtgctgg
     4921 tgatgggctg tgccttcggc gcatttatgg ggcttctgat cgacgccctg aagatcccgg
     4981 catttatcat tacgcttgcg gggatgttct ttttgcgcgg cgtcagctat ctcgtttcgg
     5041 aagagtcgat tccgataaac catcccattt atgacacgct ctcaagcctt gcgtggaaaa
     5101 tccccggcgg cggtcgcctt agtgcgatgg ggctgttgat gctggcggtg gtggttatcg
     5161 gtattttcct tgcgcatcgt acccgttttg gcaatcaggt gtacgctatt ggcggcaacg
     5221 cgacgtcggc gaacctgatg gggatttcta ctcgcagcac tactattcgc atttatatgc
     5281 tctccaccgg actggcaaca ctggcgggga ttgtcttctc gatttatacc caggccggat
     5341 atgcactggc gggcgtaggt gtggaactgg acgccatcgc gtcggtggtg attggcggta
     5401 cgttgttaag tggtggcgtc gggacggtgc ttgggacgct ttttggcgtg gcaattcagg
     5461 gactgatcca gacttacatc aactttgacg gcacgctgag ttcctggtgg acgaaaatcg
     5521 ccatcggtat tttgttgttt atttttatag cattacagcg tgggttaacg gtgctgtggg
     5581 agaatcgtca gagttcgcca gtgacaagag tcaacattgc gcagcgataa aaatgcctct
     5641 ccgtgtggag aggcgcagga gattacgcgt ccgggaactc acggataaag cgttcgacat
     5701 cttcaaccat atggtcgttg ccgacaaaga acgaacggcg ctggtgcaga gtttccggga
     5761 tgatatccag aatacgctct ttgccatcgc tcgctttacc gcccgcttgt tccgccagga
     5821 atgccatcgg gttgcactca taaagcaaac gcagtttgcc gtccgggtgg ctggcggtgc
     5881 ttgggtagag ataaataccg cctttcagca ggttacggtg gaaatccgca accagtgaac
     5941 cgatataacg tgaggtatac gggcggttgg tggatttatc ttcttcctgg cagaatttaa
     6001 tgtacttctt caccccgttc ggaaacttaa tgtagtttcc ttcgttgatg gagtaggttt
     6061 tgcctttctc cgggaagcgc atccgttcct ggcacaggca gaaaacgccc agcgaaggat
     6121 cgtaagtaaa ggcgtgaaca ccgcatccgg tggtgtaaac cagcatggta gaggagccgt
     6181 ataccacgta acctgccgca acctgtttgt taccaggctg gaggaaatct tcttccgtta
     6241 ccggcgtgcc gacgggcgta actcggcggt agatggagaa aatggtaccg acagagacgt
     6301 taacatcgat gttggacgag ccatccagtg ggtccatcag caccacgtat tttgcatgtt
     6361 cacagccttc aaagacaaca atctcatctt cttcttcaga ggcaatgcct gcaacgatat
     6421 cgcgtgcttt cagtgcggct ttcagttttt cattagcgaa caagtcgagt ttttgctgaa
     6481 cctcgccctg cacgttctca gcaccgctgg cacccaggat atcaaccagt cctgctttgt
     6541 tgatatcgcg atggataatc ttggcgccca gttttattgc cgacagcaaa gcagtgagct
     6601 caccggtagc atgagaaaac tcgtgctgct tttcgacaat aaattcacct aacgttttca
     6661 taaaactttc cctgcaatgt ttatggagta aagcgaccgc aacaatctta acaaataatc
     6721 tcaatgttgc gctcaggtga atcgcgccag caaattacgg attatcctga aatgcgtttc
     6781 tcacttgccc gacatatgcg taaaatgagc ggcagattaa aaaaggatag tgacgtatgc
     6841 gcattcatat tttaggaatt tgtggcacgt ttatgggcgg tctggcgatg ctggcgcgcc
     6901 agttaggcca tgaagtaacg ggttcggacg ccaatgtgta tccgccgatg agcaccttac
     6961 ttgagaagca aggcattgaa ctgattcagg gttacgatgc cagccagctc gatccgcagc
     7021 cggatctggt gattattggc aacgccatga cccgtggaaa tccgtgtgtg gaagcggtac
     7081 tggaaaaaaa catcccttat atgtcaggtc cacagtggct gcacgatttt gtgctgcgcg
     7141 accgctgggt gctggccgtt gccggtacac acggcaaaac caccaccgcg ggaatggcga
     7201 cctggattct ggaacagtgt ggttacaaac cgggatttgt gatcggcggt gtgccgggga
     7261 actttgaggt ttcggcgcgt ctgggcgaaa gcgacttctt tgttatcgaa gcggatgagt
     7321 acgactgcgc cttcttcgac aaacgctcta aatttgtcca ttactgcccg cgtacgctga
     7381 tcctcaacaa ccttgagttc gatcacgccg atatctttga cgacctgaaa gcgatccaga
     7441 aacagttcca ccatctggtg cgtatcgttc cggggcaggg ccgtattatc tggccggaaa
     7501 atgacatcaa cctgaaacag accatggcga tgggctgctg gagcgagcag gagctggtgg
     7561 gtgagcaggg gcactggcag gcgaaaaagc tgaccactga tgcttccgaa tgggaagtct
     7621 tgctggatgg cgaaaaagtg ggcgaagtga aatggtcgct ggtaggcgaa cataatatgc
     7681 ataatggcct gatggcgatt gcggcggccc gccatgttgg cgtagcgccg gcagataccg
     7741 ctaacgcgct gggttcgttt attaatgctc gtcgccgtct ggagttgcgt ggtgaagcga
     7801 atggcgtcac ggtatatgac gattttgccc atcacccgac ggcgattctg gcaacgctgg
     7861 cggcgctgcg tggcaaagtt ggtggtacag cgcgcattat tgctgtgctg gaaccgcgct
     7921 cgaataccat gaaaatgggg atctgcaaag acgatttggc accttcatta ggtcgtgccg
     7981 atgaagtctt cctgctgcaa ccggcgcata ttccgtggca ggtggcagaa gtggcagaag
     8041 cctgcgttca gcctgcacac tggagtggcg atgtggatac gctggcagat atggtggtga
     8101 aaaccgctca gcctggcgac catattctgg tgatgagcaa cggcggtttt ggtgggatcc
     8161 atcagaaact gctggatggt ctggcgaaga aggcggaagc tgcgcagtaa ttcggcctca
     8221 gcctgagata gcattgccgg ataaggcgtt tacgccgcat ccggcaaacc atactcacat
     8281 caacaacgaa aattactctt cattctccgc cagttcgcgc agatactgga aaatctggcg
     8341 tgcggatttc ggcggcttat tcccttcttt ctctttcttc gcgttgcgga tcagagtacg
     8401 cagttgctga cgatcggcat cgggccacag atttaatacc tcagcgatgg cgtcatcacc
     8461 ttgatcgatc agacgatcgc gcaggttttc cagtttatgg aacagcacca cctgctggtt
     8521 gtgacggttt ttcagcttat ccagcgcctg acggatcggt tctacatcgc gctggcgcag
     8581 catcttaccg atgagctgca actggcggcg gcgaccttcc atcttaatac gctgggcgag
     8641 ctcaatagcc gcgcgcagat ccgcatctaa cgggatctta tccagcgcgt ttttccccag
     8701 atcaacaatt tccgcgccaa ggcgttttag ctcctcggca tcacgtttaa tttcactttt
     8761 actgacccag ataatttcat cgtcttcgtc ttcgatgtca tcaccgggaa cgtcgtcgag
     8821 ccagtcttcg ggctgcttag tcatctcagg ctccttaaaa aaagaggcta atgttaccag
     8881 ttaagatgcg cactgaaaaa cggttctctg ttagacttca gagaaactct ctacattatg
     8941 gcacttgcaa tgaaagtaat ctctcaagtt gaagcgcagc gcaagattct ggaagaagca
     9001 gtttccactg cgctggagtt ggcctcaggc aaatcggacg gtgcggaagt tgccgtcagc
     9061 aagaccaccg gcattagcgt aagcacgcgt tatggtgaag tggagaatgt tgaattcaat
     9121 agcgatggcg cgctggggat cactgtttat caccagaacc gcaaaggtag cgcatcatcc
     9181 accgatttaa gcccgcaggc cattgcccgt actgtacagg cggcgctgga tattgcccgt
     9241 tatacctcgc cagatccctg tgccggcgtg gcagacaaag agctgctggc ctttgacgca
     9301 ccagatctcg acttgttcca ccctgcggaa gtttccccgg atgaagccat tgaactggcg
     9361 gcccgcgcag aacaggcggc attgcaggcg gacaaacgca tcaccaatac cgaaggtggc
     9421 agctttaaca gccactacgg tgtcaaagtt tttggcaaca gccacggcat gttgcagggt
     9481 tactgctcaa cgcgtcattc gctctccagc tgtgtaattg ccgaagaaaa tggcgatatg
     9541 gagcgtgatt acgcctacac cattggtcgt gcgatgagcg atctgcaaac gccagagtgg
     9601 gttggggtcg actgtgctcg ccgtacttta tcgcgcctgt caccgcgtaa actctccacc
     9661 atgaaagcgc cggtcatttt tgccaatgaa gtggcaaccg ggctttttgg ccatctggtg
     9721 ggggcgatag cgggtggatc ggtttaccgt aaatctacct tcctgctgga ttcgctgggt
     9781 aaacaaattc tgccggactg gctgaccatt gaagagcatc cgcatctgct gaaagggctg
     9841 gcgtcgacgc cattcgacag cgaaggtgtg cgcaccgagc gtcgcgatat tattaaagat
     9901 ggcatcctga ctcagtggct gctgaccagc tattcggcgc gaaaactggg gctgaaaagc
     9961 accggacatg cgggcggtat tcacaactgg cggattgccg gacaaggtct aagcttcgag
    10021 cagatgctca aagagatggg caccgggctg gtggtgacgg aattgatggg ccagggcgtg
    10081 agtgcaatta ccggtgatta ttcccgtggt gcggcgggct tctgggtaga aaacggcgaa
    10141 attcagtatc cggttagcga aatcaccatc gcaggtaatt taaaagatat gtggcgcaat
    10201 attgtcaccg tcggtaacga tattgaaaca cgcagtaata tacagtgtgg ttctgtgctg
    10261 ttgccggaga tgaaaatcgc cggacagtaa aaaaactggc gcgacctgtc gcgctataaa
    10321 ctaaaaaatt acacaaaatc attcgcactg catcgagacg gaaagtgaat gagggccggg
    10381 gagcgtactc gcagtacgtg acccggtcga atgagcgtag tcgtcgatga ggcagtgtga
    10441 atgatgaagt gtaaataaaa aaggaagtga gcaatgcgaa aaagcctgtt agctattctt
    10501 gcagtctcct cgttggtatt cagttcggcg tcgtttgccg ctgatcttga agacaatatg
    10561 gaaaccctca acgacaattt aaaagtggtc gaaaaagccg ataacgcggc gcaagtcaaa
    10621 gacgcgttaa cgaagatgcg cgccgcagcg ctggatgcgc aaaaagcaac gccgccgaag
    10681 ctcgaaggca aatcaccgga cagcccggag atgaaagact tccgtcacgg tttcgatatt
    10741 ctggtcggtc agattgacga cgcgctgaag ctggcaaatg aaggtaaagt aaaagaagcg
    10801 caggctgccg cagagcaact gaaaacgacc cgcaacgcct atcaccagaa gtatcgttaa
    10861 ttcctcattt ccctgttgcc tgcactcagg taacagggaa cttatcatcg caaatgatgc
    10921 accacctgat tgctgctgcc gcgccagatc agggaagggt cttttaaatc ctgcacaaat
    10981 ttgccgtcga ccagcacgtt aatcaaatca acaacctgca tttgcgctgc gttgagttcg
    11041 tcgagtttat agcctgtcca cacccagatg tctttacccg gacactcggc gcggatgcgt
    11101 tgtaccagtt tcagaatatc cggcacgttt tgcggatgca gcggatcgcc gccggagagg
    11161 gaaataccct ggcgtttgat acgagtgtca ttcagatcgt taatgatctg gtcttccatt
    11221 gctttagtaa atggctgacc ggaatttacc cgccatgtgc ttttgttata gcaaccgggg
    11281 cattcatgaa cacacccgga gacaaacaga gtgcaacgag tgccggggcc gttgacgatg
    11341 tcgacaggat agtactgatg ataattcatt atttcgcctg gcttatcagt ccgcgtgtag
    11401 actgcatccg gtaatcaatg cctgatgcga cgctgtcgcg tcttatcagg cctacagccg
    11461 ttgccaaatg taggccggat aaggcgttta cgccgcatcc ggcaatcaac gcgggatgcg
    11521 acgctttcac atcacatccg gcatttgctt agtgcagatc aacctatctg cccatttccc
    11581 aaatgtttaa cgcggcgctt aacttcttcc tgcttgccgg cgttaaacgg acgtgcatcc
    11641 gggctaccta aatatccgca cacgcggcga gttaccgaca cacgggaggc gtcatggtta
    11701 ccacatttcg ggcaggtgaa gcctttgctg gtgcactcga actcaccggt aaagccacac
    11761 tcgtagcact catcaatcgg tgtattggtg ccgtaatacg gtacatgctg atagctgtaa
    11821 tcccagacat cttccagcgc cttcaggttg tgctgaatgt ttgaatactc gccgtagcaa
    11881 atgaaaccac cgttcgccag cggcgggtaa ggcgcttcaa agtcgatctt gtcgtacggg
    11941 ttcaccttct tctccacatc gaggtggaaa ctgttggtgt agtaaccttt atcggtcacg
    12001 cccggcacca cgccaaactc agcagtatcg agacggcaga agcggtcgca caggttttca
    12061 ctcggcgtgc tgtagagact gaaaccataa cccgtttctt ccttccactg atccactgcc
    12121 tgacgcagac gttcaacaat ggcgatacct ttcgcgcgaa gctgctcgtt gtcgtaaaca
    12181 tgctcgccgc cgaacagcgc gttaatggtt tcgtggatgc cgatgtaacc cagcgaaata
    12241 gacgcacgac cgtttttgaa gatttcagaa acatcatcgt cagcattgag acgcacgcca
    12301 caagcacctt ccatatagag gatcggggcc acgcgcgctt tcacgccttc gagacgagcg
    12361 atacgggtca tcagcgcctt acgtgccagc accagacgtt catccagcag cttccagaag
    12421 gtggcttcat cgccttttgc ttccagagca atacgcggca ggttcaggct gatcacgccg
    12481 aggttgttac gaccatcgtg gatctgctcg ccgttttcat tttcccacac gccgaggaag
    12541 ctgcggcagc ccatcggagt tttaaacgaa ccggtgactt tcactacctg atcgtagttc
    12601 aggatatccg gatacatgcg cttgcttgcg cactccagcg ccagctgttt gatgtcgtag
    12661 ttcggatcgc cttttttatg gttcaggcca tcgcgaatcg caaacaccag tttcgggaac
    12721 accgcagttt tacggttttt accgaggcct gcgatacggt tacgcaggat agattcctga
    12781 atcaggcgcg actcccagct ggtgcccaga ccaaaaccaa aggttacaaa cggcgtctga
    12841 ccgttggcgg tgtgcagggt gtttacttcg tactccagcg actggaaggc atcgtagcac
    12901 tctttaatgg tacgagagtt agcgtagcct tcggcgtccg ggatgttcca ctcttctgcg
    12961 gtcttgcgat gtttgttgta gctggcggtg acaaacggtg ccagcacttc atcgatacgg
    13021 ttaatggttg tgccgccata aatatggctg gcgacctgag caataatctg cgcagttaca
    13081 gcggttgccg tagagatcga cttcggcggt tcaatctcgg cgttccccat cttaaagccc
    13141 tgggtcagca tgcctttcag gtcgatcaac atgcagttga acatcgggaa gaacggcgag
    13201 taatcgagat cgtgatagtg aatatcgcca cgctcatgtg cctgcaccac gtcacgcggc
    13261 agcaggtgct gacgtgcata gtgtttagcc acgatcccgg ccagcaggtc gcgctgggtt
    13321 ggaatcacct tgctgtcttt gttggcgttt tcgttgagta acgaggcgtt ggtctgctcg
    13381 accagaccac ggatctcctg attcaggcga ccgcgttttt cacgttcaat gtcgcgatcg
    13441 tgacggtact cgatgtaagc acgagccagt tgtttgtatg gacctgacat cagctggttt
    13501 tcaacagcgg tctggatctc attgatatcc acctggttgc ggccctgcat ctgctcgctg
    13561 acaactgcag caacagtggc gcaataatcg gcatcatcga cttccgctgc tttagctgca
    13621 cgcagaatcg cttctttgat gcgctctgat ttaaacggca ctttgcagcc gtctcgtttc
    13681 atcacatgcg gtgtcatgat cgctccatat ttttaagaac aggttatcca cagaaattgg
    13741 gaaaggcgtt ttccggtttt ttcgtttcgt tttccggtgc tttccgcaat cgccatccgc
    13801 ttttccacaa cgccgcacct ttttcgtggg gagctgtagt agcaattata gtcgattaat
    13861 acaacatatt gggttgggac gcattttaaa gtctatatat agtgctttgc atcaaggatg
    13921 tttgaacttt ttttgatgta gctcaaagta aaaagcagag cgtacggatg acgggcgcta
    13981 cagcgttatg taaatttttt aatgaatttg ctggttgaaa aataaacaaa aacaacatgc
    14041 tgacagacaa aaccccggaa tgaccggcat taccggggct tagggaagat ttacttctgt
    14101 aaccaccaga cagcctcaaa aggccgtaaa ttcatggcac agggttgtgg tgaggcttct
    14161 tcgtagttat gcatcacaag ctgccagttg ccgcgcattt gccctggctg ccagggttgg
    14221 atctcacggc taaggttggc aatgaccagc aaggtttgcc ccttccattc acggcgatag
    14281 caccacaata cagggctgtt tggcagcaga tcctggtaat tgccccatgt caggatggct
    14341 tcctgcttac gcagtgcgat taacttttgg taggtgtaaa acaccgagga atcatcggcc
    14401 agcgcggctt ctacgttgat ttgttgatag ttatcaccca ggccaatcca cggttcgcca
    14461 gccgtaaatc cggcattatc gccgttgctc cattgcatgg gcgtgcggct gttgtcacgg
    14521 gatttactgg cgaggattgc caataactcg tcggcatcac gaccatcgtt gcgcagctcg
    14581 gcaaacatat tgaggctctc tacgtcgcga tagtcagtaa tgcgcgtgaa atgcgggttg
    14641 gtcatgccaa tctcttcgcc ctggtagata tacggcgttc cctgcatgcc atgcagcacc
    14701 atcgccagca tttttgccgc aggcacgcgg tattcacctt catcaccaaa gcgagaaaca
    14761 atgcgcggct gatcgtggtt acaccagaac aaggcattcc atgctacgtt gtgcattcct
    14821 tgttgccagt ggcggaacaa tgttttcaac gccacaaagt caggtttagc cagcgtccat
    14881 ttttcaccac cgggataatc gaccttcagg tgatgaaaat taaaggtcat cgacaattca
    14941 ctgcctgtca gtgccgcgta tcgctggcaa tgctcaaggc tggtggagga catttcacct
    15001 acggtcatta acccgcgtgg cgtaaacaca tcgcggttca tctcgtgcaa aaactcgtgt
    15061 gctcgtggcc cgtcggtgta gaagcgacgc ccgtcgccat ccaggtcatc agggaaacgc
    15121 gggtctttgg agatcagatt caccacatcc aggcgcaacc cgtcgacccc acgatcggcc
    15181 cagaactcac agactttttt cagcactgcg cgtaccgctg gattctccca gttgagatcc
    15241 gcctgttctg gtgcaaagag atgcaaatag tactgttcgc tttccgcatg ccagcgccac
    15301 gcactaccgc caaattttga acgccagttg ttcggtggcg tttctggttc tccatcgcgc
    15361 cagatataaa actggcggta agggctttct ttgttcagcg cctcgcgaaa ccaggcatgt
    15421 tgggtagagg tatggttaaa caccatatcg agaatgatac gaatcccgcg cgattttgcc
    15481 tgcgtcacca gttcgtcaaa atcgtccagc gtgccgtagg tgggatcaat cgccgtatag
    15541 ttcgctacgt cgtaaccgtt atcgacctgg ggagagacat aaaagggggt tagccagatg
    15601 gcatcaacgc ccagtttatg cagatagtcc aggcgttgga taacgccacg taaatcgccg
    15661 gtaccgctac ccgtggtgtc ctgaaaactc tttggataaa tctggtagat aacgccgttt
    15721 tgccaccagt ggggaggatt agtcattacg ttattcctgc aaatgcgagg gggcgcaatt
    15781 gcgccccgaa gaaaattaaa caatgtccag cgtgcccagg cggtatttcc gctgatagat
    15841 aaacgaggtg agtacaatcg ggatgatgat ggcgatagcc attgccagcg caaacacctg
    15901 ccagtagttc ggttgaatcg agagaattcc cggcaggccg cctacgccga tgccattcgc
    15961 cataacgccg ttcaggccgc atagcaatcc tgccagacca gaaccaatca tcgcgcacag
    16021 catcgggaag cgatatttca ggttgatgcc gtacattgca ggctcagtga ccccaagcca
    16081 ggcggagatc gccgcaggca cggagatctc gcgttcattg tgcttgcggc tggaaatgat
    16141 aatgccgatc acggcggagc cctgagcgat attcgacagc gcaatcagtg gccacactgg
    16201 cgtaccaccc atgctttgaa tcatctgcaa atcaatagca agcgtggtct ggtgtacccc
    16261 ggtgatcacc agcggggcgt acaggaagcc aaacaatgcc gcgccaatcg gagcaaagct
    16321 gccggtcatc aggtgacgta ccgcaaaggc aacgccatcg ccaatcatgc gaccaaacgg
    16381 accaatcagc gcatgggcga ggaacaccgc gaggatcagc gaacagacgg gcaccaccac
    16441 cagatagagg taatctggca cgatgcgttt aaggcgagtt tcaataacgc ccagcgccag
    16501 cccggctaac agtgccggga tcacctgcgc ctgatagccc actttggcga tgctgaacat
    16561 gccaaagtcc cacacttccg gcagctgctg cccgagcaga taagcgttca tcagttgggg
    16621 ggaaaccagt gtcacgccaa gcacgatacc aaggatcggt gtgccgccca tttttttcac
    16681 cgctgaccag caaatcccga ccggcaggta gaagaagatc gcttcaccga tcaaccacag
    16741 aaaatcgtag atcgtttgca gggaagggta catttgcgcc agcgtttgac cgttgctcat
    16801 gggcaaatcg ccgatcacat tgcgaaaacc gaggatcaaa ccgccgctaa tcaacgcggg
    16861 cagcaacggg aagaaggtct ctgcgaaatg agtgatcaac tgctcatgcc atttcatatt
    16921 ctgccgggcg gcttttttta cctgctcttt atcaacctgc gcctgtccgg ttgacgctat
    16981 cagtgcttga tagtagtcac ccacgttggt gccaatcacc acctgaaatt gcctggcatt
    17041 ggtgaaacag cctttcacca tggggagttg ctcaatttct ttcggtctgg cattggccgg
    17101 ttggttgagg acaaagcgta ggcgagtaat acagtggctc accgtcgcaa tattgccgcg
    17161 cccgccgacc agttcaatca accgatcgat atccgtttgg tttattttgc tcatcataaa
    17221 gccccatggc agatgacatt tttggttggc tgcagaatat attgcgcgga aaaatttaaa
    17281 aacgggaacg ttcccgaaac gcagcgaaga tcacaattta tcgttcagga aacgatctgg
    17341 acagggtggc ggggatgatg atttgttgcg gttcgctgcg cccggttacc tgtgcgatca
    17401 actggcaggc cgcctggcgt ccagcttcgg cgtaaccggg atctacggtg acgatctccg
    17461 gatggaggaa tttcattaac ggcgtattac cgacgctcgc cagttgcaag gtgtcgatgc
    17521 gttgctcttg caggtattta cttgcgccaa gtgccagcgt gtcggttgcg cacagtaagg
    17581 cggtagtttc aggcgtaatc acttttgcta cgttctcata gccttgcttc atagcaaggc
    17641 ctggcagagc ggcaacggga tgcagtttat gcgctttgca gaacgccagg taggcttcgt
    17701 gacgtcgctt accggtcgtc acgtcactgt gcggcacgcc gagataactg atattacgat
    17761 gcccctggtc atacagccgt tgcatcagga tcttgattgc cccttcgtcg tcataacaga
    17821 ccgaagcaaa gccttttgcg tcacgcgcca gcagaaccag cgatgactgc cagtgggcta
    17881 acatttcttc tgttatgccg gtaaaaccga acagcactac gccgtcgata ttacgccgtt
    17941 tcagcacccc caaatgttcg gcaactaatt gcggggaaaa ctgactttcc atcatgattg
    18001 ggtcgtaacc ttgttcatag aactctggca gcatggtttg aacggcgaga ttttctgaca
    18061 acgaatccag gcgggtaaca atgatggcga ccactttatc gctttgccca cgcatagcgc
    18121 gcgcagagcg ggaaggggaa aatccatgct gattcatcac tgcttcaaca cgctcgcggg
    18181 tgcgctggct cacgccgctt tcgttattca gcacccggga aactgtagat ttccccacgc
    18241 cgcttaagcg cgcgatgtct ttgatggtca gccgattttg catcctgttg tcctgtaacg
    18301 tgttgtttaa ttatttgagc ctaactttac ccgtgcattc agcaatgggt aaagtctggt
    18361 ttatcgttgg tttagttgcc agcaggtatt atatcgccat agatgctacg aatattattg
    18421 gattctcctt attatttgcg gcgctttttt cacttaccgg aggttatatg gaacctgatc
    18481 ccacgcctct ccctcgacgg agattaaaac ttttccggta agcccgtctt ttcacggcgt
    18541 taccggatgc gtaaggccgt gacgttttaa cgtccctgct cagctttatt accttcaggt
    18601 aaggcttcgc cacgcctgaa gacatttctg tactgtttca gacagtgcgg agggactcct
    18661 tatgtttaaa gaaattttta cccggctcat tcgccattta ccttcccgtc tggttcatcg
    18721 tgatccattg cctggcgcgc agcagacagt gaatacggtg gtcccgccgt ccttaagtgc
    18781 gcattgcctg aaaatggcgg tgatgcccga agaagaattg tggaaaacgt tcgacaccca
    18841 tccggaaggg ttaaatcagg cggaagtgga atctgcccgc gaacaacatg gtgaaaataa
    18901 attacccgca caacaactgt cgccgtggtg ggtacattta tgggtctgct atcgcaaccc
    18961 ctttaatatt ttactcacca ttctcggcgc tatttcttac gccacggaag atttatttgc
    19021 tgcgggcgtt atcgcgctaa tggtcgctat ttctacgttg ctgaacttta ttcaggaagc
    19081 acgttccact aaagcggcag atgccctgaa agcgatggtc agcaataccg cgacggtgct
    19141 gcgcgtaatt aacgacaaag gcgaaaatgg ctggctggag atcccgatcg accagctggt
    19201 gcccggcgat attataaaac tggcggcggg ggatatgatc ccggcagatt tacgtatctt
    19261 gcaagcgcgg gatctgttcg tcgctcaggc gtcgttaacc ggtgagtctc tgcccgtgga
    19321 aaaagccgct accactcgcc agccggagca cagcaatccg ctggagtgcg acacgctgtg
    19381 ttttatgggc accaccgtgg tgagcggcac ggcacaagca atggtgattg ctacaggtgc
    19441 caatacctgg tttggtcaac tggcggggcg tgttagtgag caggaaagcg agccgaatgc
    19501 ctttcagcaa gggatcagcc gcgtcagtat gctgctgatt cgctttatgc tggtgatggc
    19561 accggtggtg ctgttaatca atggctacac caaaggcgac tggtgggaag cggcgctgtt
    19621 tgcgctttcg gtcgcggtag gcctaacgcc ggaaatgttg ccgatgattg ttacctcgac
    19681 gctggcgcgc ggcgcagtaa agctgtcgaa acagaaagtg atcgtcaaac atctggatgc
    19741 tattcagaac tttggcgcaa tggatattct gtgcactgat aaaaccggca ccctgacgca
    19801 ggataaaatt gtgctggaga atcataccga tatctccggt aaaaccagcg aacgcgtgct
    19861 gcatagcgcg tggttgaaca gtcattatca gaccggactt aaaaacctgc tcgatacagc
    19921 ggtgctcgaa ggtacggatg aagagtcagc gcgctcgctg gccagtcgtt ggcaaaaaat
    19981 cgatgagatt ccgtttgatt tcgagcgtcg ccggatgtcg gtggtagtgg cagaaaatac
    20041 cgagcaccat cagctggttt gcaaaggtgc attgcaggaa atcctcaatg tgtgttcgca
    20101 ggtgcgtcac aatggcgaga ttgtgccgct cgatgacatc atgctgcgta agattaagcg
    20161 ggttactgat acgctgaatc gtcaggggct gcgcgtggtt gcggtggcga cgaaatacct
    20221 gccagcgcgt gaaggagatt accagcgggc ggatgaatcc gacctgatcc tcgaaggata
    20281 tattgctttt cttgatccgc caaaagagac aaccgctccg gcactgaagg cattaaaagc
    20341 gagtggaatt accgtaaaaa tccttactgg cgacagtgag ttagttgcag cgaaagtgtg
    20401 ccatgaagtg gggctggacg cgggagaggt ggtcattggt agtgatattg aaacgctatc
    20461 tgacgacgaa ctggcaaatc ttgcacagcg caccacgctg tttgcccgcc tgacgccgat
    20521 gcataaagaa cgcattgtga ccttactgaa gcgcgaaggg catgtggttg gctttatggg
    20581 cgatggtatt aatgatgcgc ccgccttacg cgcggcggat atcggcattt ctgtggacgg
    20641 cgcggtagat attgcccgtg aagcggctga tatcatcctg ctggaaaaaa gcctgatggt
    20701 gctggaagag ggggttattg agggacgtcg cactttcgcc aacatgctga aatacatcaa
    20761 aatgacggcg agttctaact ttggtaatgt gttcagcgtg ctggtggcga gtgctttctt
    20821 gcccttcctg ccgatgttgc cgttacactt gcttattcag aacctgctgt acgatgtgtc
    20881 acaggtggcg atcccgtttg ataacgtcga cgacgagcaa attcaaaagc cgcagcgttg
    20941 gaatccggcg gatctggggc gctttatgat cttcttcgga ccgatcagct cgatcttcga
    21001 tattctgacg ttttgcctga tgtggtgggt attccatgcc aacacgccgg aaacgcaaac
    21061 gctgttccag tcgggatggt ttgtggtggg cttactgtcg caaacgctga ttgtgcatat
    21121 gatccgcacc cgccgtgtgc cgtttattca gagctgtgca tcgtggccgt taatgatcat
    21181 gaccgtgatc gtgatgattg tcgggatcgc attgccgttt tcaccgctgg ccagttatct
    21241 gcaattacag gcgttgccgt taagctattt cccgtggctg gttgcgattc tggcagggta
    21301 tatgacgtta acccagttgg tgaaaggatt ttatagccgt cgttacggct ggcagtaaag
    21361 aataaactag gcatggtggc ccggattcag attgcagaca aagtgagttt tgttcatgcc
    21421 ggatgcggtg taaacgccta atccggccta caaattcaat caattgcagg aatcacgtag
    21481 gcctgataag cgtagcgcat caggcgattt tgcgtttgtc atcagactta atccgggcat
    21541 gatagcccgg atttccatca agattagcga cgaatagcga tcgcttcgat ctcaatcttt
    21601 acgtctttcg gcagacgggc aacttcaacg caagaacgtg ccgggaaggt ggcgttgtgt
    21661 tcggtgaaga aggcttcgta agtggcgttt acggttgcga agtcgttcag atcttttaca
    21721 aacacggtag ttttaacgat gtcgcccact ttcagaccag cggcttcgac gatcgctttt
    21781 acgttatcca gcgactgacg tgcctgtgca gcgacgtctg ccggtacttc gcccgttttc
    21841 ggatttaccg ggatctgacc ggaggtgatg atcatatttc ccagatcaac gccctgtacg
    21901 taaggaccga tagctgctgg tgcattttcc gtcgcgatag ttttgctcat gatttctcct
    21961 ttattacagc ggtaaaaagt ctggctcatt atagggagcc agacttttat taccaaccgc
    22021 aattaattgg ccagcaccac attatgggaa aactcttttt cacagtattt gcatttgagc
    22081 gcgatgtcat tggcgcgttt tcgcacggca aagctggatg aaaccggttc ggcatggctg
    22141 atacagttgc tgttcgggca gaccaacaca ttgtcgatgc gctctggcag actggggcgc
    22201 gatttaccca ccacttcata gttgtcgata cggttaaccg tggcttgcgg cgcatacaat
    22261 gccagttgat ctacctgatc ttcactcaaa aaggtatttt cgattttgat cagatctttg
    22321 cggcccatct cgccagaagg caggttcaga ccaatggtga tgcgctgatc cgtttcggtc
    22381 agcttgaaca gactcaacag cttaaaaccg atctgggcgg ggatatggtc aattactgtg
    22441 ccgcgtttaa tagcttcaac ctgcaattta ttatcgtgtg tcatctctat ttccccttac
    22501 agtaccagat cgcgattcag aaccagtgcc agtaacgcct ggcgagcgaa aatcccgttg
    22561 cctgcctgct ggaagtacca ggcgtgtggc gttttatcaa catccgtcgc aatttcatca
    22621 acacgcggca gcggatgcag tactttcata ttggctttgg cgttgtggag atcgctggcg
    22681 cgaagaacaa actgcgcttt cacgttggcg tattcggatg ggtccaggcg ctctttttgc
    22741 acgcgggtca tatacaggat gtctacttcc gccatcactt cttcaataga gctgtgcaga
    22801 ctccatgcga tccctttttc atcgagcata tccagaatgt attgcggcat tgccagcgcg
    22861 tccggcgcga tgaagtaaaa acggttgccg tcgaacttcg ctaacgcctg agtcagggag
    22921 tgaacggtgc ggccatattt caggtcacca accattgcga cgtggagatt gtccagacgc
    22981 ccctgggttt cctgaatagt gaataagtcc agcaaggttt gcgtcggatg ttggttggag
    23041 ccatcaccgg cattcagtac cggtacattg ccggaaaact cggtggccag gcgcgccgca
    23101 ccttcctgcg gatgacgcat cactatcgca tcgacgtaag tgctgataac cgaaatggta
    23161 tcggccagcg tttcgccctt tttacccagt gatgtattgg cgctgtcgga gaagcccacc
    23221 acgctggcac ccaggcggtg catggaagtt tcgaaagaga ggcgggtacg ggtagaggct
    23281 tcgaagaagc agctggcaat gactttgtgc ttcaacagct ctggttgcgg gtttgctttc
    23341 agttttgccg ctgttgccag caccagatta aggtcatcgc gactaaggtc gtttatggaa
    23401 atgatatgtt tctgatatag cggattagcc atcttttatc tcctgacgcc tgggcaaaaa
    23461 aaagcccctc gattgagggg ctgggaatgg gtgatcaacg ggaagaaaaa cggcaggcca
    23521 gcgtcttttt tcagacgcgg taagacaaaa tgtcgaacac actgaaccat acatcctccc
    23581 ggcaaattgt ccggcattat actcatcgtc agaagcggtg caagcaattg atgcaatatt
    23641 ttgtcagcgc aaacggttta tttgaattta aagttaaaat atatgcattt ttatttactg
    23701 tgattctggg gggaactgtc gttcggtatc aataattgca gacatttcct gcttttttct
    23761 ttttcacttt cacgcaatca gatatgcatt ttattccatt catccgactt atagggcgga
    23821 gtgtgaaaac gaacggctag cactattgct tagagctcag ggatgcgcgc tatcacttta
    23881 atttcaaaat caaagcctgc cagccatgta acgcccaccg ccgtccaggt tggataagat
    23941 ggcgcgctaa atatttcatt tttcaccgtc atgatgtctt caaattgttt ttctggatcg
    24001 gtatgaaagc tcgtaacatc aatgatatcg tcaaaagtgc atcccgcagc tgccagggtc
    24061 gcatgcaaat tatcaaaggc cagtctgact tgttgctgaa aatcgggttc tggtgttccg
    24121 tcctctcgac ttcctacttg cccggaaaca aacagcaaat cgccggaacg aatagccgca
    24181 gaataacgat gctcagcata cagtgaatgt cgtccagcag ggaaaacagc ggttctttct
    24241 accatttggt tatcctcaag atttacgaca tgaacagaag atttatattt accaggagcc
    24301 gcttttagcg gacgacgtga gtaaacaaaa cccagacatc atgggaaatg gctgggctta
    24361 attgagcgta gtcggttatg cgccaaacgc gccatcaatg gtatgcatcg cgccggtaac
    24421 aaaactggct tctggccctg ctaaccatgc gaccatacca gcgacctctt ccggttgccc
    24481 atgtcttttg atggccataa aactatgcga catatcgcgc attggcccgt tggcgggatt
    24541 agcgtcggta tcaattggcc ctggctggac gacgttgatg gtgatcccac gcggtccgaa
    24601 atcacgggcc agcccgcgcg ccatgccttg cagggcagat ttactggcgg cataagcagc
    24661 catgcctgca acaggcatac gatcgccatt cacggagccg atgattaaga tgcgtccgcc
    24721 ttcgggcatc tgccgggcgg cttcaacaga ggcatggtaa ggagcatgaa tattgatttt
    24781 gaaaaggcga tcaatatcgt cggcatttaa ttccagggca tcgccaaaga cgccaatacc
    24841 tgcatttacc accaggatat ccaatgcgcc gctcttacga acgacatcaa taacagcgtc
    24901 tttgtcagca ctatctgtga atactgctgt cgctccagtc tcttgtgcca ggcgttcagc
    24961 ggcatctttc gaccccgcat aggtgaatcg tacattggcc ccatcggtga cgaaacgacg
    25021 tacgatagcg gcaccgattc cacggctacc accgaggatg agaactgtct tacctgtaaa
    25081 agcgcccata aggactcctt gatttattat gtaacatgca ttacaaaact gttttaactt
    25141 tctgtcaaca agttttgtaa tggtcactaa aaaacaatct cgcgttccag gtcgtcccag
    25201 acgtttcgct cctgagcagg cagtctctgc ggcaaaagtg ctttttcacc aaaaaggttt
    25261 cgatgctgtc agtgttgctg aagttactga ttatcttggt attaaccccc cgagcctcta
    25321 cgcggctttt ggcaataagg ctgggttatt tagccgtgta ctcaatgaat atgtcggtac
    25381 ggaagctatt ccgcttgccg atattcttcg tgatgatcgt ccggtagggg agtgcctggc
    25441 tgaggtatta aaagaagcgg cgcgccgata tagccaaaac ggcggctgcg ctggctgtat
    25501 ggttcttgaa ggcattcata gtcatgatcc acaagcgcgt gatattgccg ttcaatatta
    25561 tcacgccgca gaaacgacca tttatgacta tatcgccagg cggcatccac aaagcgcaca
    25621 atgtgtgact gattttatga gtaccgtgat gtcagggctt tctgcgaagg cacgggaggg
    25681 gcactccatc gaacaactct gtgcaacagc tgcactggcg ggggaagcga taaaaactat
    25741 tctcaaggag tgatgcgggc cttgacccga aaggcgggaa cgcgcctgcc gataagttgt
    25801 gataagacaa taattcacgc gttaaggcta gcggaattga tcatcttttc gtataacgat
    25861 ggaaatgaaa cgttgtttta attaaggagt ggaaaagatg atcatcggaa atattcataa
    25921 tcttcagccg tggctacccc aggagttacg ccaggcgatt gagcatatca aagcacacgt
    25981 tacggcagaa acgccaaagg gcaagcacga tatcgaaggc aatcgtctgt tttatcttat
    26041 ctcggaagat atgaccgagc cgcacgaagc tcgccgtgcg gagtaccatg cccgctatct
    26101 cgacattcag attgtgttaa aaggtcagga aggcatgacc ttcagcacgc aacctgcagg
    26161 caccccggat accgactggt tagctgataa agacatcgca tttttgccgg aaggcgttga
    26221 tgagaaaaca gttatcctta atgaaggtga ttttgttgtg ttttatccgg gggaagtgca
    26281 taaaccgctg tgcgcagtgg gcgcgccagc ccgggttcgc aaagcagtag tgaagatgct
    26341 gatggcgtga tgacttttcg ccgtaaataa ctccaggttt acggcgagtt tgtgaaaaga
    26401 gcgttttttg atattttttt gtgagtaaaa tttgtaatgc ttagacgttc ttattaactc
    26461 aaggagttcg tcatgagcaa aatatcagat ttgaattatt ctcaacacat tacattagcc
    26521 gacaatttta aacaaaaaag tgaagtttta aatacctggc gtgttggaat gaataatttt
    26581 gcccgtaatg ccgaggggca ggataacaca agaaatatcc ttgatcctaa gacatttttg
    26641 gaatttttgg taaaaatatt tactctaggt tatgtggatt ttagcaaacg ctccaacgaa
    26701 gcgggaagaa atatgatggc tcatattgag tcctcatctt atatcaaaaa taatgatggc
    26761 agtgagataa taaagtttgt tatgaataat cctgaagggg aacgagcgga tttatctaag
    26821 gtggaaatag aaatcacact ttccactttc actactatgg ggactcgtca aggacatacg
    26881 gctattatat ttcaacaacc tgatggttcg actaatcgtt atgaaggaaa gtcctttgaa
    26941 agaaaagatg agagttcatt acacctgatt actaacaaga ttctggcatg ttaccaacgc
    27001 gaagctaaca aggaaatagc tcgtctatta aatatttcac aggagttaaa taattctcag
    27061 gacttgaata actcgcaggt gagttgtaaa gattcagttg attctacgat tacggattta
    27121 ttagaaaaac cattgaataa tgcattatta gcaataagga aagaacatct gctattaatg
    27181 ccttatgtat gtaatgaatc gatttcatac ttgcttggtg aaaaagggat actgaaagaa
    27241 atagatgacc ttaacgcagt aaataattat cttcttaata ataagaaagc tactgacaat
    27301 gaaattaatg acatcaaagt taacctgtct catattctta ttgattcctt agatgatgca
    27361 aaagttaacc ttacaccggt catcgattct ggatgacttt tttaaaatcc ccatatatta
    27421 atgatgtaag aatactggat tggtgtttta ataaaagaat gcaatatttt ggtgattctg
    27481 aaaagataaa gtatgcatgc tccgtgataa atcatattga ttttagccgc gatcaatcta
    27541 aagattttag ctgcgatcaa tctaaaatta aaatagctga gaccttattt ttcaatctcg
    27601 ataaagaacc ctataaaaa
//
LOCUS       DAJVSY010000040        27456 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.040, whole genome shotgun sequence.
ACCESSION   DAJVSY010000040 DAJVSY010000000
VERSION     DAJVSY010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27456
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.040"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            454..3639
                     /gene="rne"
                     /locus_tag="OQQ19_001543"
     CDS             454..3639
                     /gene="rne"
                     /locus_tag="OQQ19_001543"
                     /EC_number="3.1.26.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E"
                     /protein_id="HCS1803209.1"
                     /translation="MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKG
                     KITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIV
                     QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLEL
                     PEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF
                     RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIE
                     SAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQL
                     RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRL
                     SPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASY
                     LLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEE
                     AMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPA
                     QPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRD
                     TRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTDEQQAPRRERSRR
                     RNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAV
                     VAPVVEETAAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRS
                     RRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQV
                     EEQREQEEVQVQPMVTEVPVAAAVEPVVSAPVVEEMAEVVEAPVPVAEPQPEVVETTH
                     PEVIAAAVTEQPQVITESDVAVAQEVAEHAEPVVEPQEETADIEEVAETAEVVVAEPE
                     VVAQPAAPVVAEVAAEVETVAAVEPEITVEHNHATAPMTRAPAPEYVPEAPHHSDWQR
                     PTFAFEGKGAAGGHTATHHASAAPARPQPVE"
     gene            complement(3836..4789)
                     /gene="flgL"
                     /locus_tag="OQQ19_001544"
     CDS             complement(3836..4789)
                     /gene="flgL"
                     /locus_tag="OQQ19_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HCS1803210.1"
                     /translation="MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPI
                     AASQAVVLSQAQAQNSQYTLARTFAIQKVSLEESVLSQVTTAIQNAQEKIVYASNGTL
                     SDDDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESI
                     KQQVDASRSMVIGHTGDKIFDSITSNAVAEPDGSASETNLFAMLDSAIAALKTPVADS
                     EADKEIAAAALDKTNRGLKNSLNNVLAVRAELGTQLNELESLDSLGSDRALGQTQQMS
                     DLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSLFQLNK"
     gene            complement(4801..6444)
                     /gene="flgK"
                     /locus_tag="OQQ19_001545"
     CDS             complement(4801..6444)
                     /gene="flgK"
                     /locus_tag="OQQ19_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HCS1803211.1"
                     /translation="MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQA
                     NSTLGAGGWVGNGVYVSGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTS
                     TSSLATQMQDFFTSLQTLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNI
                     AIGASVDQINNYAKQIASLNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVS
                     VQDGGTYNITMANGYSLVQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLN
                     TGSLGGILTFRSQDLDQTRNTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPA
                     VLQNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKV
                     AFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEKDAGDSDNRNGQ
                     ALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSIS
                     GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR"
     gene            complement(6510..7451)
                     /gene="flgJ"
                     /locus_tag="OQQ19_001546"
                     /pseudo
     CDS             complement(6510..7451)
                     /gene="flgJ"
                     /locus_tag="OQQ19_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415599.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly peptidoglycan hydrolase FlgJ"
     gene            complement(7451..8548)
                     /gene="flgI"
                     /locus_tag="OQQ19_001547"
     CDS             complement(7451..8548)
                     /gene="flgI"
                     /locus_tag="OQQ19_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415598.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HCS1803212.1"
                     /translation="MIKFLSALILLLVTTAAQAERIRDLTSVQGVRQNSLIGYGLVVG
                     LDGTGDQTTQTPFTTQTLNNMLSQLGITVPTGTNMQLKNVAAVMVTASLPPFGRQGQT
                     IDVVVSSMGNAKSLRGGTLLMTPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQL
                     NGGRITNGAVIERELPSQFGVGNTLNLQLNDEDFSMAQQIADTINRVRGYGSATALDA
                     RTIQVRVPSGNSSQVRFLADIQNMQVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVA
                     QGNLSVTVNRQANVSQPDTPFGGGQTVVTPQTQIDLRQSGGSLQSVRSSARLNNVVRA
                     LNALGATPMDLMSILQSMQSAGCLRAKLEII"
     gene            complement(8560..9258)
                     /gene="flgH"
                     /locus_tag="OQQ19_001548"
     CDS             complement(8560..9258)
                     /gene="flgH"
                     /locus_tag="OQQ19_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HCS1803213.1"
                     /translation="MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPT
                     PVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKT
                     NFGFDTVPRYLQGLFGNARADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGN
                     LHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVVDARIEYVGNGYINEAQN
                     MGWLQRFFLNLSPM"
     gene            complement(9311..10093)
                     /gene="flgG"
                     /locus_tag="OQQ19_001549"
     CDS             complement(9311..10093)
                     /gene="flgG"
                     /locus_tag="OQQ19_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006819466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HCS1803214.1"
                     /translation="MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDL
                     LYQTIRQPGAQSSEQTTLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGF
                     FQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVT
                     QQGQAAPVQVGQLNLTTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGLLYQGY
                     VETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMQQKLTQL"
     gene            complement(10231..10986)
                     /gene="flgF"
                     /locus_tag="OQQ19_001550"
     CDS             complement(10231..10986)
                     /gene="flgF"
                     /locus_tag="OQQ19_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgF"
                     /protein_id="HCS1803215.1"
                     /translation="MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV
                     PVEGLSLPTRTLVTASTPGADMTPGKIDYTSRPLDVALQQDGWLAVQTADGSEGYTRN
                     GSIQVDPTGQLTIQGHQVIGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVGR
                     LKLVKATGSEVQRGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMS
                     DMIASARRFEMQMKVISSVDDNAGRANQLLSMS"
     gene            complement(11006..12214)
                     /gene="flgE"
                     /locus_tag="OQQ19_001551"
     CDS             complement(11006..12214)
                     /gene="flgE"
                     /locus_tag="OQQ19_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HCS1803216.1"
                     /translation="MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFA
                     GSKVGLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKL
                     DENRNLVNMQGLQLTGYPATGTPPTIQQGANPTNISIPNTLMAAKTTTTASMQINLNS
                     SDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDP
                     NSIAKTATTLEFNANGTLVDGAMANNIATGAINGAEPATFSLSFLNSMQQNTGANNIV
                     ATPQNGYKPGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWS
                     ATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQD
                     QILNTLVNLR"
     gene            complement(12239..12934)
                     /gene="flgD"
                     /locus_tag="OQQ19_001552"
     CDS             complement(12239..12934)
                     /gene="flgD"
                     /locus_tag="OQQ19_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook assembly protein FlgD"
                     /protein_id="HCS1803217.1"
                     /translation="MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLK
                     NQDPTNPMENNELTSQLAQISTVSGIEKLNTMLGSISGQIDNSQSLQASNLIGHGVMI
                     PGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVH
                     SFTWDGTLTDGSTAPNGSYNVAITASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGT
                     YGTTTLDEVRQII"
     gene            complement(12946..13350)
                     /gene="flgC"
                     /locus_tag="OQQ19_001553"
     CDS             complement(12946..13350)
                     /gene="flgC"
                     /locus_tag="OQQ19_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HCS1803218.1"
                     /translation="MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRA
                     KQVVFQVNAAPGAATGGVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEM
                     VNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ"
     gene            complement(13354..13683)
                     /gene="flgB"
                     /locus_tag="OQQ19_001554"
     CDS             complement(13354..13683)
                     /gene="flgB"
                     /locus_tag="OQQ19_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HCS1803219.1"
                     /translation="MLDKLDAALRFQQEALNLRAQRQEVLAANIANADTLGYQARDID
                     FASELKKVMQRGRDATSVVALTMTSTQHIPAQALTPPTAELQYQMSLSALSGQIKGMM
                     NVLQSGN"
     gene            13839..14498
                     /gene="flgA"
                     /locus_tag="OQQ19_001555"
     CDS             13839..14498
                     /gene="flgA"
                     /locus_tag="OQQ19_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HCS1803220.1"
                     /translation="MLAIKRSVAIIAILFSPLSAASNLTSQLHTFFSAQLVGVSDEVR
                     VSIRTAPNLLPPCEQPLLSMSNNSRLWGNVNVLARCGNDKRYLQVNVQATGNYVVAAM
                     PIVRGGKLEAGNVKLKRGRLDTLPPRTVLDINQLVDAISLRDLSPDQPIQLTHFRQAW
                     RVKAGQRVNVIASGDGFSANAEGQALNNAAVAQNARMRMVSGLVVSGVVDADGNILIN
                     L"
     gene            14574..14897
                     /gene="flgM"
                     /locus_tag="OQQ19_001556"
     CDS             14574..14897
                     /gene="flgM"
                     /locus_tag="OQQ19_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma-28 factor FlgM"
                     /protein_id="HCS1803221.1"
                     /translation="MSIDRTSPLNPVSTVQPRETTDAPVTNTRAAKTTDSTSTSTSTS
                     TSTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRNGELKMDIGKIADALINEAQQ
                     DLQSN"
     gene            14902..15318
                     /gene="flgN"
                     /locus_tag="OQQ19_001557"
     CDS             14902..15318
                     /gene="flgN"
                     /locus_tag="OQQ19_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis chaperone FlgN"
                     /protein_id="HCS1803222.1"
                     /translation="MTRLAEILDQMSAVLNDLKTVMDQEQQHLSMGQINGSQLQWITE
                     QKSSLLATLDYLEQLRKKEPNTANSVDISQRWQEITVKTQQLRQMNQHNGWLLEGQIE
                     RNQQALEMLKPHQEPTLYGANGQTSTTHRGGKKISI"
     gene            complement(15358..16893)
                     /gene="murJ"
                     /locus_tag="OQQ19_001558"
     CDS             complement(15358..16893)
                     /gene="murJ"
                     /locus_tag="OQQ19_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706990.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HCS1803223.1"
                     /translation="MNLLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVA
                     FKLPNLLRRIFAEGAFSQAFVPILAEYKSKQGEDATRVFVSYVSGLLTLALAVVTVAG
                     MLAAPWVIMVTAPGFADTADKFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIP
                     AFAPTLLNISMIGFALFAAPYFNPPVLALAWAVTVGGILQLVYQLPHLKKIGMLVLPR
                     INFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASFLASGSVSWMYYADRLMEFPS
                     GVLGVALGTILLPSLSKSFASGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTV
                     SLFQYGKFTAFDALMTQRALIAYSVGLIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLI
                     LTQLMNLAFIGPLKHAGLSLSIGLAACLNASLLYWQLRKQKIFTPQPGWMAFLLRLVV
                     AVLVMSGVLLGMLHIMPEWSLGTMPWRLLRLMAVVLAGIAAYFAALAVLGFKVKEFAR
                     RTV"
     gene            complement(17060..17926)
                     /locus_tag="OQQ19_001559"
     CDS             complement(17060..17926)
                     /locus_tag="OQQ19_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HCS1803224.1"
                     /translation="MKKLRIGVVGLGGIAQKAWLPVLAAASDWMLQGAWSPTRAKALP
                     ICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRD
                     AERLVELAARKKLTLMVGFNRRFAPLYGELKTQLATAASLRMDKHRSNSVGPHDLYFT
                     LLDDYLHVVDTALWLSGGKASLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAG
                     SQRETVQAVTDGALIDITDMREWREERGQGVVHKPIPGWQSTLEQRGFVGCARHFIEC
                     VQNQTVPQTAGE"
     gene            complement(17928..18575)
                     /locus_tag="OQQ19_001560"
     CDS             complement(17928..18575)
                     /locus_tag="OQQ19_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceH family protein"
                     /protein_id="HCS1803225.1"
                     /translation="MKYQLTALEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNR
                     EPVMNLSESEVQEQLDNLVKRHYLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVAL
                     ITTLLLRGAQTPGELRSRAARMYEFSDMAELESTLEQLANREDGPFVVRLAREPGKRE
                     SRYMHLFSGEVEDQPAVTDMSNAVDGDLQARVEALEIEVAELKQRLDSLLAHLGD"
     gene            complement(18586..19170)
                     /gene="rimJ"
                     /locus_tag="OQQ19_001561"
     CDS             complement(18586..19170)
                     /gene="rimJ"
                     /locus_tag="OQQ19_001561"
                     /EC_number="2.3.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S5-alanine
                     N-acetyltransferase"
                     /protein_id="HCS1803226.1"
                     /translation="MFGYRSNVPKVRLTTDRLVVRLVHDRDAWRLADYYAENRHFLKP
                     WEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFGLFDPDEKEIIGVANFSNVVRGSF
                     HACYLGYSIGQKWQGKGLMFEALTAAIRYMQRTQHIHRIMANYMPHNKRSGDLLARLG
                     FEKEGYAKDYLLIDGQWRDHVLTALTTPDWTPGR"
     gene            19406..20608
                     /gene="mdtH"
                     /locus_tag="OQQ19_001562"
     CDS             19406..20608
                     /gene="mdtH"
                     /locus_tag="OQQ19_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtH"
                     /protein_id="HCS1803227.1"
                     /translation="MSRVSQARNLGKYFLLIDNMLVVLGFFVVFPLISIRFVDQMGWA
                     AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMGIAHEPWLL
                     WFSCLLSGLGGTLFDPPRSALVVKLIRPQQRGRFFSLLMMQDSAGAVIGALLGSWLLQ
                     YDFRLVCATGAVLFVLCAAFNAWLLPAWKLSTVRTPVREGMTRVMRDKRFVTYVLTLA
                     GYYMLAVQVMLPIMVNDVAGAPSAVKWMYAIEACLSLTLLYPIARWSEKHFRLEHRLM
                     AGLLIMSLSMMPVGMVSGLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMG
                     FSRLGLAIGGAIGYIGGGWLFDLGKSAHQPELPWMMLGIIGIFTFLALGWQFSQKRAA
                     RRLLERDA"
     gene            20672..21319
                     /gene="grxB"
                     /locus_tag="OQQ19_001563"
     CDS             20672..21319
                     /gene="grxB"
                     /locus_tag="OQQ19_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 2"
                     /protein_id="HCS1803228.1"
                     /translation="MKLYIYDHCPYCLKARMIFGLKNIPVELHVLLNDDAETPTRMVG
                     QKQVPILQKDDSRYMPESMDIVHYVDKLDGKPLLTGKRSPAIEEWLRKVNGYANKLLL
                     PRFAKSAFDEFSTPAARKYFVDKKEASAGNFADLLAHSDGLIKNISDDLRALDKLIVK
                     PNAVNGELSEDDIQLFPLLRNLTLVAGINWPSRVADYRDNMAKQTQINLLSSMAI"
     gene            21453..22013
                     /locus_tag="OQQ19_001564"
     CDS             21453..22013
                     /locus_tag="OQQ19_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1803229.1"
                     /translation="MNKFLFAAALIVSGLLVGCNQLTQYTITEQEINQSLAKHNNFSK
                     DIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALP
                     VFDKEKGAIFLKEMEVVDATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGS
                     QGEAMAKKLAKGIEVKPGEIVIPFTD"
     gene            22119..23165
                     /gene="pyrC"
                     /locus_tag="OQQ19_001565"
     CDS             22119..23165
                     /gene="pyrC"
                     /locus_tag="OQQ19_001565"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HCS1803230.1"
                     /translation="MTAPSQVLKIRRPDDWHLHLRDGDMLKTVMPYTSEIYGRAIVMP
                     NLAPPVTTVEAAVAYRQRILDAVPAGHNFTPLMTCYLTDSLDPNELERGFNEGVFTAA
                     KLYPANATTNSSHGVTSIDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREAHFIES
                     VMEPLRQRLTALKVVFEHITTKDAADYVRDGNERLAATITPQHLMFNRNHMLVGGVRP
                     HLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAPTAL
                     GSYATVFEEMNALQHFEAFCSVNGPQFYGLPVNDTFIELVREEQQVAESIALTDDTLV
                     PFLAGETVRWSVKQ"
     gene            23239..23484
                     /gene="dinI"
                     /locus_tag="OQQ19_001566"
     CDS             23239..23484
                     /gene="dinI"
                     /locus_tag="OQQ19_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage-inducible protein I"
                     /protein_id="HCS1803231.1"
                     /translation="MRIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRY
                     AAANNLSVIGVTKEDKQRISEILQETWESADDWFVSE"
     gene            23774..24028
                     /gene="bssS"
                     /locus_tag="OQQ19_001567"
     CDS             23774..24028
                     /gene="bssS"
                     /locus_tag="OQQ19_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309465.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator BssS"
                     /protein_id="HCS1803232.1"
                     /translation="MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQTPNKSEQEGT
                     EVGQTLWLTTDVARQFISILEAGIAKIESGDFPVNEYRRH"
     gene            24143..25261
                     /gene="solA"
                     /locus_tag="OQQ19_001568"
     CDS             24143..25261
                     /gene="solA"
                     /locus_tag="OQQ19_001568"
                     /EC_number="1.5.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-methyl-L-tryptophan oxidase"
                     /protein_id="HCS1803233.1"
                     /translation="MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHH
                     GDTRLIRHAYGEGEKYVPLVLRAQTLWDELSRHNEDDPIFVRSGVINLGPADSAFLAN
                     VAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAK
                     EAGCAQLFNCPVTAIRHDDDGVTIETVDGEYQAKKAIVCAGTWVKDLLPELPVQPVRK
                     VFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERV
                     PFAEVVSDGSEAFPFLRNVLPGIGCCLYGAACTYDNSPDEDFIIDTLPGHDNTLLITG
                     LSGHGFKFASVLGEIAADFAQDKKSDFDLTPFRLSRFQ"
     gene            25309..25422
                     /locus_tag="OQQ19_001569"
     CDS             25309..25422
                     /locus_tag="OQQ19_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706980.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceO family protein"
                     /protein_id="HCS1803234.1"
                     /translation="MRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVFYF"
     gene            25683..26249
                     /locus_tag="OQQ19_001570"
     CDS             25683..26249
                     /locus_tag="OQQ19_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HCS1803235.1"
                     /translation="MSFTNTPERYGVISAAFHWLSAIIVYGMFTLGLWMVTLSYYDGW
                     YHKAPELHKSIGILLMMGLVIRVLWRVISPPPGPLPSYSPMTRLAAKAGHLALYLLLF
                     AIGISGYLISTADGKPISVFGWFDVPATLADAGAQADFAGALHFWLAWSVVVLSVMHG
                     FMALKHHFIDKDDTLKRMLGKSSSDYGV"
     gene            26253..26828
                     /locus_tag="OQQ19_001571"
     CDS             26253..26828
                     /locus_tag="OQQ19_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HCS1803236.1"
                     /translation="MKKSLLGLTFASLMFSAGSAVAADYKIDKEGQHAFVNFRIQHLG
                     YSWLYGTFKDFDGTFTFDEKNPAADKVNVTINTTSVDTNHAERDKHLRSADFLNTAKY
                     PQATFTSTSVKKDGDELDITGDLTLNGVTKPVTLEAKLIGQGDDPWGGKRAGFEAEGK
                     IKLKDFNIKTDLGPASQEVDLIISVEGVQQK"
     gene            complement(26870..>27456)
                     /locus_tag="OQQ19_001572"
     CDS             complement(26870..>27456)
                     /locus_tag="OQQ19_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HCS1803237.1"
                     /translation="NHYEYEVGHFENAFEIPADTFREQLPKAVEMMQAHKDKKIVMYC
                     TGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGLPVRFIGKNFVFDERMGER
                     ISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYKGCCSEICCEESALPPE
                     EQRRRRAGRENGNKIFNKSRGRLNTTLGIPDPTE"
BASE COUNT         6589 a         7310 c         6913 g         6644 t
ORIGIN      
        1 gggatgcgtt catataaaaa ctgtgagtaa gcgggtgata aatggtaaaa gtcatcttgc
       61 tataacaagg cttgcagtgg aataatgaag ccgtttccgt gtccatcctt gttaaaacaa
      121 gaaattttac ggaataaccc attttgcccg accgatcatc cacgcagcaa tggcgtaaga
      181 cgtattgatc tttcaggcag ttagcgggct gcgggttgca gtccttaccg gtagatggaa
      241 atatttctgg agagtaatac ccagtctgtt tctttgataa ttgcgctgtt tttccgcatg
      301 aaaaacgggc aaccgacact ctgcgcctct ttgagctgac gataaccgtg aggttggcga
      361 cgcgactaga cacgaggcca tcggttcaca cccggaaagg cgttactttg cccgcagctt
      421 agtcgtcaat gtaagaataa tgagtaagtt acgatgaaaa gaatgttaat caacgcaact
      481 cagcaggaag agttgcgcgt tgcccttgta gatgggcagc gtctgtatga cctggatatc
      541 gaaagtccag ggcacgagca gaaaaaggca aacatctaca aaggtaaaat cacccgcatt
      601 gaaccgagtc tggaagctgc ttttgttgat tacggcgctg aacgtcacgg tttcctccca
      661 ctaaaagaaa ttgcccgcga atatttccct gctaactaca gtgctcatgg tcgtcccaac
      721 attaaagatg tgttgcgtga aggtcaggaa gtcattgttc agatcgataa agaagagcgc
      781 ggcaacaaag gcgcggcatt aaccaccttt atcagtctgg cgggtagcta tctggttctg
      841 atgccgaaca acccgcgcgc gggtggcatt tctcgccgta tcgaaggcga cgaccgtacc
      901 gaattaaaag aagcactggc aagccttgaa ctgccggaag gcatggggct tatcgtgcgc
      961 accgctggcg tcggcaaatc tgctgaggcg ctgcaatggg atttaagctt ccgtctgaaa
     1021 cactgggaag ccatcaaaaa agccgctgaa agccgcccgg ccccgttcct gattcatcag
     1081 gagagcaacg taatcgttcg cgctttccgc gattacttac gccaggacat cggcgaaatc
     1141 cttatcgata acccgaaagt gctcgaactg gcacgtcagc atatcgctgc attaggtcgc
     1201 ccggatttca gcagcaaaat caaactgtac accggcgaga tcccgctgtt cagccactac
     1261 cagatcgagt cgcagatcga gtccgccttc cagcgtgaag tccgtctgcc gtccggtggt
     1321 tcgattgtta tcgacagtac cgaagcgtta actgccatcg acatcaactc cgcacgcgcg
     1381 acccgcggcg gcgatatcga agaaaccgcg tttaacacca acctcgaagc tgccgatgag
     1441 attgctcgtc agctgcgcct gcgtgacctc ggcggcctga ttgttatcga cttcatcgac
     1501 atgacgcctg tacgccacca gcgtgcggta gaaaaccgtc tgcgtgaagc ggtgcgtcag
     1561 gaccgtgcgc gtattcaaat cagccatatt tctcgctttg gcctgctgga aatgtcccgt
     1621 cagcgcctga gcccatcact gggtgaatcc agtcatcacg tttgtccgcg ttgttctggt
     1681 actggcaccg tgcgtgacaa cgaatcgctg tcgctctcta ttctgcgtct gatcgaagaa
     1741 gaagcgctga aagagaacac ccaggaagtt cacgccattg ttcctgtacc aatcgcttct
     1801 tacctgctga atgaaaaacg ttctgcggta aatgccattg aaactcgtca ggacggtgtg
     1861 cgctgcgtga ttgtgccaaa cgatcagatg gaaaccccgc actaccacgt gctgcgcgtg
     1921 cgtaaagggg aagaaacccc aaccttaagc tacatgctgc cgaagctgca tgaagaagcg
     1981 atggcgctgc cgtctgaaga agagttcgct gaacgtaagc gtccggaaca acctgcgctg
     2041 gcaacctttg ccatgccgga tgtgccgcca gcgccaacgc cagctgaacc tgccgcgcct
     2101 gttgtagctc cagcaccgaa agctgcaccg gcaacaccag cagctcctgc acaacctggg
     2161 ctgttgagcc gcttcttcgg cgcactgaaa gcgctgttca gcggtagtga agaaaccaaa
     2221 ccgaccgagc aaccagcacc gaaagcagaa gcgaaaccgg aacgtcaaca ggatcgtcgc
     2281 aagcctcgtc agaacaaccg ccgtgaccgt aatgagcgcc gcgacacccg tagtgaacgt
     2341 actgaaggca gcgataatcg cgaagaaaac cgtcgtaatc gtcgccaggc acagcagcag
     2401 actgccgaga cgcgtgagag ccgtcagcaa gctgaggtaa cggaaaaagc acgtaccacc
     2461 gacgagcagc aagcgccgcg tcgtgaacgt agccgccgcc gtaacgatga taaacgtcag
     2521 gcgcaacaag aagcgaaggc gctgaatgtt gaagagcaat ctgttcagga aaccgaacag
     2581 gaagaacgtg tacgtccggt tcagccgcgt cgtaaacagc gtcagctcaa tcagaaagtg
     2641 cgttacgagc aaagcgtagc cgaagaagcg gtagtcgcac cggtggttga agaaactgcc
     2701 gctgccgaac caattgttca ggaagctcca gctccacgca cagaactggt aaaagtcccg
     2761 ctgccagtcg tagcgcaaac tgcaccagaa cagcaagaag agaacaatgc tgataaccgt
     2821 gacaacggtg gcatgccgcg tcgttctcgc cgctcgcctc gtcacctgcg cgtgagtggt
     2881 cagcgtcgtc gtcgctatcg tgacgagcgt tatccaaccc agtcgccaat gccgttgacc
     2941 gtagcgtgcg cgtctccgga actggcctct ggcaaagtct ggatccgcta tccaattgta
     3001 cgtccgcaag atgtacaagt tgaagagcag cgcgaacagg aagaagtaca agtgcagccg
     3061 atggtgactg aggtccctgt cgccgccgct gtcgaaccgg ttgttagcgc gccagttgtt
     3121 gaagaaatgg ctgaagtcgt agaagccccc gtaccggttg ccgaaccgca accggaagtg
     3181 gttgaaacga cgcatcctga agtgattgcc gccgcggtaa ctgaacagcc gcaggtgatt
     3241 accgagtctg atgttgccgt agcccaggaa gttgcagaac acgcagaacc ggtggttgaa
     3301 ccgcaggaag agacggcaga tattgaagaa gttgccgaaa ctgctgaggt tgtggttgca
     3361 gaacctgaag ttgttgctca acctgccgcg ccagtcgtcg ctgaagtcgc agcagaagtt
     3421 gaaacggtag ccgcggttga accagagatc accgttgagc ataaccacgc taccgcgcca
     3481 atgacgcgcg ctccggcacc ggaatatgtt ccggaggcac cgcatcacag tgactggcag
     3541 cgccctactt ttgccttcga aggtaaaggt gccgcaggtg gtcatacggc aacgcatcat
     3601 gcctctgccg ctcctgcgcg tccgcaacct gttgagtaat aattagctca aagtaatcaa
     3661 gccctggtaa ctgccagggc ttttttattt catgtttgaa tcaacatatt aaaattcatc
     3721 aaatggcatc cttgctaacc aacaatgcaa aataggcaaa aaaaatgccc gccccggcga
     3781 tccctgagcg ggcagacaaa acatacccag tttcatgata tgttttaaag cgagcttatt
     3841 tgttgagctg gaagagcgac aatccctgca tatcggtaaa tgctttatac gatgcctgca
     3901 atgccgtttg ctgcatgatg taagatgaaa tagttgcatt ccagtccaca tcaaccagat
     3961 cgctcatctg ctgcgtttgc cctaaagcgc gatcgctacc taaggaatcc agcgactcca
     4021 gttcgttcag ctgcgtgcct aattccgcgc gaacggcaag gacattattc agcgagtttt
     4081 tcagtccacg gttggtttta tccaatgccg cagcggcgat ttctttatcc gcttcgctat
     4141 ccgcgaccgg cgttttcagg gctgcgatgg cgctatccag catggcaaaa agattggttt
     4201 cagaagcgct accgtctggc tccgcaactg cgttgctggt aatactgtcg aaaattttgt
     4261 cacccgtgtg ccctatcacc atcgaacgcg aagcatcgac ctgttgctta atactttctg
     4321 ctccaccgac gtatttccct ttctcttcgc taaacggcgc agtctctgtt ttataaccgg
     4381 caaaaatgta gcgcccgtta ccgtcagtgg tgttcgccag attcagcaac tggtcacgaa
     4441 gcccctgaat atccgtagcc agcgaggccc ggtcatcgtc actcaaggtg ccattgctgg
     4501 cgtagacaat tttttcctga gcattctgga tagcagtggt gacctggcta agtacactct
     4561 cttccagtga cactttttga atggcgaaag tacgcgccag cgtgtactgg ctgttttgcg
     4621 cctgtgcctg ggagagaact acggcttgtg atgctgcaat gggatcgtca gaagggttaa
     4681 cgactcgctt acctgtcgac atctgctcgc cgtacttcat ccattccgcc tgagaattgg
     4741 tgatgccacg catgttttgc tggtacatca tctgggtact gaaacgcatc ttatctcccc
     4801 ttagcgaatg ttaatcagcg catcaaaaat cgcgtttgcc gtctgcagaa cctgcgcatt
     4861 cgccaggtaa tactgctgaa aacgttgcag atttccgtac tcttcgtcga gattgacgcc
     4921 agagatagac tgctgctgat tggaaagctg cgtcaccaca ttaccttgcg tggcgctact
     4981 ggttttcaac gtcgcggttt tattaccgat atcactcact aacgaggcat aagcgtcgtt
     5041 aaaggatttc gcaccgccca ccgttttact gttgctttgc agatccagca gggcctgacc
     5101 gttgcggtta tcgctatcac ccgcatcttt ttcgctcgcc atcgctattt tcgcttcgtc
     5161 ggtgattaat acatccatgt tgacgatggc gtcacttact ggtttcagcg tgaagctgtc
     5221 gttaacggca ggcgttcctg taaacgtcaa ctccagacca tcaaatgcca ctttaccgtt
     5281 ggcatccggc gtcaccgtaa aagtggtatt gctggcaagg cgggtgacct gccactgatt
     5341 attatcgaac gagattttgt aatctgtcgc cagtaccgcg gaggcatcag ttaccgtggc
     5401 accgatcgca acgtcacctt tgtttttcgt gttttgcaaa accgcgggct taccgatagc
     5461 aaagaaatct tcaccagcat cgccgttggc atcaaatccg gctttgtgtt gggtgttgaa
     5521 agcctcagca aatgccagcg ccagttgtcc aagcgtatta cgcgtctggt ccagatcctg
     5581 agaacggaat gtcagaatgc cgcccagcga cccggtattc agtaatttct ccgggatctc
     5641 aatattgcct gccgtcccat caacgtaagc gacagtcgta cgagaagggt cggcgctgga
     5701 aggaactgcc gccagttgcc gcgccgtact tccctgaacc agtgagtaac cattggccat
     5761 cgtgatgtta taagtgccgc catcctgaac gctgacttct acaccaacaa tctggtttaa
     5821 ttcgctcacc agttgatcgc gttgatccag cagattgtta ggtgacgccc ctgcccccac
     5881 gcctgtcagg cgggagattt ggtcgttcag gctggcgatt tgtttagcgt aattgttgat
     5941 ctgatcaacg ctggcaccta tcgcgatatt gacctgtttg tcctggtcgc gaagatactg
     6001 atcggtggtt ttaaactgat tcaccaaccc ttctgatttc ccaatcagcg cctggcgcgc
     6061 tgccgggtct tccgcgttac tcaccagcgt ttgcaggctg gtgaagaaat cctgcatctg
     6121 tgttgccagc gaagaggtac tggtggagag catattgtcg attttcgaca tctgctcata
     6181 gcgggcagtc aggccgctac tttgcgtctg cgccgcacgt aactggttgg tgataaacgc
     6241 atcatactca cgctgcacac cagaaacgta gacaccattg ccaacccagc cgccagcgcc
     6301 caacgtgcta ttggcctgcg ccataatagt ggtttggcgg gtatatccgg caacgttata
     6361 gctggagata ttattacttg ccgtatttaa cgccgcctgg gccgcgttca gtccgctcat
     6421 ggcgttatta atcaagctgg acatggaggt tccttataag ccttcaatta cagagtatta
     6481 tcggcagcga cccgccggac ttgagttatt caaaacagat tatcaatgtt catactgtag
     6541 gttttgctca ccttgtcgct tatcgatttc atctgctgaa tcatgttggt gagtttgcgg
     6601 gcatagtgag gatcggtggc atagcccgcg tcctgtaggg cctgcgcccc ctgctccgca
     6661 ctcgtggcgg tggtcacggc ggcgtagcgc gggttacgcg ttaacagccc aacgtaatcc
     6721 gactatgctt ccagatacga gctgtagacc cgaaacttcg cttttacttt cttcgcttcg
     6781 ccgttttcat attcagtcgt ggtgatttca gtaactggcc ctttccagtt gccagaggct
     6841 ttgacaccaa acaggttata gctcggctcg ccgttttcgc ggcggatttg ccgttgcccc
     6901 caaccagatt ccagcgccgc ctgagcgagg atcaaatgat gtggcacacc gctttgctgg
     6961 cttgccagtt gggcgggcag cgagagttgc gcgaggaatg ctttactgtc acccggcagc
     7021 gaatcatcgt agttacgtgg cacggccttt tgcaccagct gcgaaagcgc ctgattttga
     7081 taacgcacca cagtttcgag cgggaatttc atcggtgctg ctggcgtgga ctcctctggc
     7141 aatggttgtt ctggcgtcat ctgtttaacc atcatctctg caagccccag acctttgccc
     7201 gccgtcatct gttgggcaat ctgctggtca tacatactgg tatacaggcg agtgtgctcg
     7261 ctgctgaaca ggccatcttt tggtaaagcg tcgcgcatgc ttttcaacat catctgcacg
     7321 aacatccctt ccacctgacg ggccaccgga cggatatttg ccgccggatc ttcgcccgct
     7381 ttcgccttta gttcgttgag tgattgcgca tcccaggccg cacttgccag tagtttgcta
     7441 tcgctgatca tcagatgatt tccagttttg cccgcagaca tcccgcactt tgcattgatt
     7501 gcagtatgga catcagatcc atcggcgtag cgcccagcgc attgagcgcg cgcaccacgt
     7561 tattgagcct ggcgctggaa cgtacgcttt gcagcgaacc gccgctctgg cgtaaatcga
     7621 tctgcgtttg tggagtaacc acagtctgtc caccaccaaa cggtgtatct ggctggctga
     7681 cattggcctg acgattaact gttactgaga gattcccctg cgctaccgcg cagctgtcga
     7741 gggtcacttc gcgattcatc accaccgaac cggtgcgcga gttaatcact actttagcgt
     7801 cctgcggggt gacattaacc tgcatattct ggatatcggc aaggaagcgg acctgggaac
     7861 tgttgccact cggtacgcgc acctgaatag tccgcgcatc taacgcggtg gcgctgccat
     7921 atccacgcac gcggttgatg gtgtcagcga tttgctgcgc catgctgaaa tcttcgtcgt
     7981 taagttgcaa attaagggta ttcccgacgc caaactggct gggcaattca cgttcaataa
     8041 ccgcaccatt ggtgatccgt ccaccgttca gttggttaac ctgaacactg ctaccgccag
     8101 cggaggctcc tgcgccgcca accagaatat tgccctgcgc cagcgcatac acctgactgt
     8161 caacgccctt aagcggtgtc atcaacaacg tacctccacg caagcttttg gcattaccca
     8221 tggaagaaac caccacatcg atggtttgcc cctgacgtcc aaacggagga agtgacgctg
     8281 tcaccattac cgcagcgacg ttttttagct gcatattggt gcccgtcgga acggtaattc
     8341 ccagctgtga gagcatgtta ttaagcgttt gtgtggtaaa cggcgtctgg gttgtctggt
     8401 caccggtgcc atccagcccc accaccagac catagccaat cagtgagttt tgccttaccc
     8461 cctgaacact ggtgagatcg cgaatacgct cagcctgagc cgccgtcgtg accagtagaa
     8521 gaattaatgc agagagaaat ttaatcacca cagcctcact tacattggcg acaggttaag
     8581 gaagaaacgc tgcaaccagc ccatattttg cgcttcgtta atgtagccat tgcctacgta
     8641 ttcaatgcgc gcatccacca cctgagtaga cggtacggta ttgctgccgc tgatagtgcg
     8701 tggattaacc acgccagaga agcgaataaa ttcggtaccc tgattaatgg caatctgttt
     8761 ttcacccacc acatgcaggt tgccgttgac cagtacctgg tcaaccgtca ccgtcaacgt
     8821 gccgctaaag gtattgctgg cattggcccc gccctttccg ttgaacgtgt taccaccgga
     8881 ggcttcgaca tcggcacgag cgttaccaaa cagcccctgc aaatagcgcg gcacagtatc
     8941 aaagccaaaa ttagttttac cgtcacggct ggcattcgca gaggagcttt tgctggcgct
     9001 gacgttctcc tgcaacacga tggtcagcgt atcgccaata ttgcgtggtc gacgatcttc
     9061 aaacagcggt tgatagccat agttaatcgg ctgagcagac tggaaaatag aaccgttggc
     9121 gacgggcgtc ggaccgggaa ccggttgtgc actggtcgcc ccctgcacca gcggcgtgga
     9181 gggtatccag gcgcagccgg ttagtgaaag caccaacaag ctggaaatgg cataagtatg
     9241 cgcagcgttt ttttgcatgg ctatcatctt caaaaatcag taaaccggtg aacctgccac
     9301 cggttaagcc ttagagttgc gtcagttttt gctgcatctg atcggtggtg gacaccgctt
     9361 tactgttgat ttcgtaagcg cgttgcacct gaatcatatt gaccagttct tccgccacgt
     9421 tgacgttaga cgtttcaaca tacccttgat acagcaatcc cgcgccgttc aggcccggcg
     9481 tgctttcgtt cggtgcacca gaggattgcg tttcggtgta gaggttttcg ccaatgctct
     9541 ccagcccggt gtcattcata aaggtggtga gattgagctg cccaacctga accggagctg
     9601 cctggccttg ttgggttacg ctgaccacgc catcacgacc gatggtgata cttaacgcat
     9661 tcgccggaat ggtgatcgct ggctgcacct gaaaaccacc agccgtcacc agctgcccgt
     9721 tctgatccac ctggaaagag ccgtcacggg tataggctga tgaaccatct ggcaacatca
     9781 cctggaaaaa gccctgccct ttaatcgcga catctttgct gttgttggtc tgcgacagat
     9841 ttccctggct gtgtaagcgt tcagtggcga ccgggcgtac ccccgtgccg atttgtaatc
     9901 cggagggtaa ggtggtttgt tcggaagact gtgcccccgg ctggcgaatg gtttgataaa
     9961 gcagatcttc aaacaccgcg cgctgacgct taaaaccgtt agtactgacg tttgccaggt
    10021 tgttggcaat gacgtccata ttggtttgct gggcgtcaag gcccgttttg gcgatccata
    10081 atgaactgat cataaaatgt cctgtagtgg attagtgaca agcagagcag aagcacgcga
    10141 cagtgtgaat tccccctcac tctaaccctc tccccaaagg ggcgagggaa tagtccgcgc
    10201 gcttttattg caatgtcatc aatcgttcaa ttaactcatc gacagcagtt ggttggcacg
    10261 gcctgcgtta tcatcgacgc tgctgatcac cttcatctgc atttcaaaac gccgcgcgct
    10321 ggcaatcatg tcgctcattg ccgcaacggc attgacgtta ctgccttcca gaacccccga
    10381 catcacacgc aaggttggat ctgcctgcag taccggccct cgcgtggcct gggtttctgc
    10441 gcttaaacga aaaatgccgt cgtcaccgcg ctgcacttcg ctgcccgtgg ctttcaccag
    10501 tttcagacgc cctactggcg caactgtatt tgccggatcg cccggattga gcgccgagat
    10561 tgtgccatcg gcagcaatag tgatttccgc tccttccggc acagcaattg gccccgcctc
    10621 gcctatcacc tgatgcccct gaattgtcag ttgcccggtg ggatcaacct gaatgctgcc
    10681 attacgcgta tacccttcgc tgccgtcagc ggtctgcacg gccagccagc catcctgctg
    10741 caacgcaacg tccagcgggc gcgaggtgta atctatcttg ccgggcgtca tgtctgcacc
    10801 cggtgttgac gccgttacca gcgtgcgcgt gggcagtgaa agcccttcca ccggcactgc
    10861 gcgcaaggcg tttaactgcg cgcgaaaacc gggcgtagag gcattggcca gattactggc
    10921 ggttaccgcc tgttgattca gcgtctggct ggctgctccc atcgcagtat aaattgcgtg
    10981 atccattgag ctatcccgtc agcgattagc gtaagttaac cagcgtgttg aggatctggt
    11041 cctgggtttt gatggtctgg gcgttagact gatagttacg ctgggcaacg atcatattga
    11101 ccagttcttt actgagatcg acgttggacg cttccagcgc accgttggtc agggtgccaa
    11161 agtttcccgt cccggctgtc cccaacagcg ccacgccaga agattgcgtc gcagaccaga
    11221 cgttgtcgcc ttcggatgcc agaccttcgt tgttggcaaa gttcgccagt acaatctgcc
    11281 ccagcagttg agtttgttcg ttggaatagt tgccgacaac cgtaccgtca tcattgattt
    11341 gataactcac cagatcgccc ggtttgtagc cgttctgggg ggttgccaca atattgttag
    11401 cgccggtatt ttgctgcatg gagttgagga agctcagact aaacgtggcg ggttctgcac
    11461 cgttaattgc gccggttgcg atattattcg ccatcgcacc atccactaat gtgccattag
    11521 cattaaattc cagtgttgtc gctgtcttcg caatgctgtt tggatcactg ctatcctggg
    11581 tgtagacctg ccagttatta tccccggtct tcacaaagta gacgctcatg tcatgagcat
    11641 taccctgact gtcgaaaaca gtcaccgaac cttttttgtt atagctatcc gcattgctgg
    11701 cgctgaatgg cgtaacagta ggaagcggat cactggaatt caggttgatc tgcatcgacg
    11761 ccgtggtggt agttttcgct gccatcaggg tattcgggat cgaaatattg gtcggattcg
    11821 ccccttgctg aatagtcggc ggcgtaccgg ttgccgggta acccgtcagc tgtaaacctt
    11881 gcatattcac caggttacgg ttttcatcca gcttaaattg tccgttacgg ctgtagaaca
    11941 ccgaaccgtt gctgtctacc agacggaaaa aaccgttctg gctgatagca acgtccagac
    12001 ctcgcccggt gttggtggtc gtgccatctg taaagtcctg agtgataccg gcaactttta
    12061 cccccagtcc cactttcgaa ccggcaaaca tatcggcaaa agaggccgtg cctgatttaa
    12121 agccgtaggt ggcggagttg gcaatattgt tgccaataac atcgaggtta gtggcggcag
    12181 cgtttaatcc gctaaccgct tgagaaaagg ccatgactga ctcctgaaat gtgaaggctt
    12241 aaattatctg ccgtacttcg tcgagggtgg tggtgccgta agtgccgaga tccagcgtat
    12301 taccgctgtt gccgcggatc acaccctgca ccagagcaaa ctgcagcggc tgggcaacca
    12361 gttgtgtacc accgttactg gcggtaatcg ctacattgta agaaccgttc ggcgcagtgc
    12421 tgccatcagt caacgtaccg tcccaggtga aactgtgaac tccggcggtc agttcaccaa
    12481 tatcaatggt gcgcacaacc gcgccatttt tatcggtgat ggtggccgta actttgtctg
    12541 ccgcctgttg cagctcaaca ccaaacggcg tggtcgtggt cacagcccct tcttcactgc
    12601 cggttcccgc aagaacagtt gtgccgggga tcatcacgcc gtgaccgatc aggttactgg
    12661 cctgtaacga ctggctgtta tcaatctgtc cggaaataga tccgagcatg gtattgagtt
    12721 tttcaatccc gctgaccgtg ctgatttgtg ccaattgcga cgtcagctcg ttgttttcca
    12781 ttggattggt cgggtcctgg tttttcagct gcgccaccag caaagtcaga aaactgcttt
    12841 gtaaatctgc ggcgttgctg cccgtgagcg aactactgct ggtggtactg acgccggtat
    12901 ttgtcggatc ggtggtggtt accgcaatgg acatagcttt ctcctttatt gaccgagcgt
    12961 aagggttttc agcatcatgc ttttcaccgt gttgagcact tcaacattgg cctgatagct
    13021 gcgtgacgcc gacatggtgt taaccatctc tccgacaaca tcaacgttcg gcatttttac
    13081 gtagcccttt gcatccgcca gcggattacc cggttcataa accagtttgt ccggggcctg
    13141 actttctata acatcggcaa cctttacgcc gcctgtcgca gcacctggtg cagcgttaac
    13201 ctggaatacc acctgttttg cccgatatgg ctgtccatcg ggaccggtca cgctatcagc
    13261 attcgccaga ttactggccg ccacgttcag gcgctgggac tgggcagtta acgccgaccc
    13321 ggcgatatca aaaatattca gcagtgccat ccgttaattt ccgctctgta aaacgttcat
    13381 catgcctttg atttgcccgc tcaacgcact aaggctcatc tggtattgca gttctgcggt
    13441 aggaggcgtc agcgcctgcg ccggaatgtg ttgcgttgag gtcatcgtca gagcaaccac
    13501 actggttgca tcccgtccac gttgcatgac ttttttaagt tcactggcaa aatcgatatc
    13561 gcgcgcctga taaccaaggg tatcggcatt ggcgatgttt gctgccagca cttcctgacg
    13621 ctgggcgcgc agattgagcg cctcttgttg aaaacgtaag gcggcgtcga gcttatcgag
    13681 catatctcct ccgcaggtat caaaattctg ccatcagctt aaatgccttt acgcgcgcgt
    13741 tatcggcgga ataaacgcaa aatgggtcgc tatttatgcc gttgatgacc attggggacg
    13801 ggtacaattc acgttgtaga aatagctggg gggcgaaaat gctggcaata aaacgtagcg
    13861 tggcgatcat cgcgatactg ttcagtccgt taagtgcggc gagcaatctc acatcgcaat
    13921 tgcacacctt ttttagcgcc cagctcgtgg gggtaagtga tgaggttcgt gtttctattc
    13981 gtacagcacc caatctacta ccgccgtgcg agcagccatt gctttcgatg agcaataatt
    14041 cccgcctgtg gggcaatgtg aatgtgttgg cacgctgcgg taacgacaaa cgatatttac
    14101 aggttaatgt gcaggccaca ggaaattatg tggttgccgc gatgcccatt gtgcggggag
    14161 gaaagctgga agctggcaat gtcaaactaa aacgcggacg actggatacc ctgccaccgc
    14221 gtacggtgct ggatatcaat caacttgttg atgccattag cctacgcgat ctatcacccg
    14281 atcaaccaat ccaattaacc cattttcgcc aggcatggcg ggtaaaagcg ggacaacgcg
    14341 tcaacgtgat cgccagcggt gacgggttta gcgccaacgc agaaggtcag gcgctgaaca
    14401 atgcagccgt cgcacagaat gcgcggatgc gcatggtatc gggactggtg gtcagcggcg
    14461 ttgttgatgc agatgggaat attcttataa acctgtaagc tgttaaagat tacccgtccc
    14521 ttgccgataa ataagcaaca catgataaaa gcgccctcaa tgaggaataa accatgagta
    14581 ttgatcgcac ttcgcctctg aatcccgtaa gcaccgttca accgcgcgaa accactgacg
    14641 cgccggtaac gaacacccgg gcggcaaaaa caaccgactc caccagcacc agcaccagca
    14701 ccagcaccag caccagcacc agtgtgacgt taagcgacgc gcaagcaaaa ctgatgcaac
    14761 ccggcagcag tgatatcaat cttgaacgtg tcgaagcgtt aaaactggcg attcgtaacg
    14821 gtgaactaaa aatggacatc ggcaaaattg ccgatgcgct gatcaacgaa gctcagcaag
    14881 acttgcagag taactgatcg tatgacacgt cttgcagaga tccttgacca gatgtccgct
    14941 gtgcttaacg atctcaaaac ggtaatggat caagagcagc aacatctctc tatggggcag
    15001 atcaacggca gccagttgca atggattaca gaacaaaaaa gctcactgct ggcgacgctg
    15061 gattacctcg aacagttacg caagaaagaa cccaatacag caaatagcgt tgatattagt
    15121 caacgctggc aggaaattac tgtgaaaacg cagcaactac gccaaatgaa tcaacataac
    15181 ggttggttac tggaaggaca gattgagcgc aatcaacagg cgctggaaat gttgaaaccg
    15241 catcaggaac cgacgctata tggggcgaac ggtcagacct caacaaccca tcgcggcggt
    15301 aaaaagattt cgatctgaag attatctccg gcctgcactg caggccggaa tgcattgtta
    15361 caccgtccgg cgggcaaatt ctttaacttt gaagcccagt accgccagtg cagcgaagta
    15421 cgcggcaatc cccgccagca cgaccgccat taaacgcagt aagcgccagg gcatggtacc
    15481 caatgaccac tccggcatga tatgtaacat acctaaaagc acgccagaca tcaccagtac
    15541 cgccaccacc agacgcaaca gaaacgccat ccagccgggt tgcggagtaa agattttctg
    15601 cttacgcaac tgccagtaaa gcagcgaagc attcagacac gccgccagac caatagaaag
    15661 tgacagcccg gcatgtttca acggaccaat aaacgccagg ttcatcaatt gcgttaaaat
    15721 cagcgtaacg atggcaattt tcactggcgt tttaatgtcc tggcgggaat aaaagccagg
    15781 agccaacact ttcactacaa tcaggccaat caaacccacc gagtaggcaa ttaacgcccg
    15841 ctgggtcatc agcgcatcaa acgcggtaaa tttaccgtac tggaacagcg aaacggttaa
    15901 cggacctgaa agaatgccca acgcaaccgc actcggcagc gccaacagga aacaaagacg
    15961 caacccccag tccatcaaac ggttgtattc atcatgattg ccactggcaa aacttttcga
    16021 cagcgacggc agcaaaatgg tgccaagcgc cacgcccagc acaccggacg gaaactccat
    16081 taagcggtcg gcgtaataca tccaagacac cgaaccggaa gcaagaaacg aggcaaaaat
    16141 ggtgttgatg attaaggaga tctggctcac agagacgcca aggatcgccg gtcccatctg
    16201 tttcaccacg cgcattgctc cggcatcgtg gaagttaatg cgcggcagga ccagcatgcc
    16261 gatcttcttc aggtgcggta gctgatacac cagctgcagg atgccgccga ccgtaacagc
    16321 ccacgccagc gccagcaccg gtgggttaaa gtacggtgcg gcaaacagcg cgaaaccaat
    16381 catgctgatg ttaagcagtg ttggcgcaaa cgccggaatc gagaagcggt tccacgtatt
    16441 cagaatcgct cccaccagcg acgccaggga gatcagcaag atatagggaa aggtaatctt
    16501 tagtagctgg ctggtcaggg caaatttgtc agctgtatca gcgaagcctg gcgcggtcac
    16561 catgatcacc cacggtgcgg cgagcatgcc agcgaccgtc acaaccgcca gcgcaagtgt
    16621 cagcaggcca gaaacataag agacaaagac ccgcgtggcg tcttcaccct gcttactttt
    16681 atattccgcc agaatcggta caaatgcctg ggaaaatgcc ccttcggcaa agatacggcg
    16741 taacaagtta ggaagtttaa aagcgacgaa aaaggcgtcg gttgccatcc ctgcgccaaa
    16801 gattctggcg acaattgcgt ctcgtgcgaa gccaagcaca cgcgaaaaca tggtcatcga
    16861 gctgacggcg gccagcgatt ttaataaatt catcggtgtt ctaatccaga ccaacgggca
    16921 aaacgcctgc aagacaggcg ctgaaagagg cgaatagtct acctggatta tggtgaattg
    16981 ctaccgccag atgttacagg gtttattcac tcatcgcatc gcgccagatc ttgtcaacga
    17041 tacgttgcgc cagcacggcc tattcgccgg cggtttgcgg aactgtctga ttttgcacac
    17101 attcaatgaa gtgccgcgca cagccgacaa atccacgttg ttcaagagtg ctctgccaac
    17161 caggaatcgg tttatgcact acgccctgcc cgcgctcctc acgccattcg cgcatatccg
    17221 taatgtcgat gagcgcaccg tcagtcacgg cctgcacggt ttcacgctga cttccggcac
    17281 ggcgatgcat acaggtggtg atctgcaaag gaccggccga aaaatggtgc tcggcaaaca
    17341 gcatttcgcc agcgtcgtta gtcagtagcg taccgccatc cagagaggct ttgccgcccg
    17401 acaaccacag cgcggtatcc accacatgca gataatcatc cagcaacgtg aaataaagat
    17461 cgtgtggccc gacactattg ctacgatgtt tatccattct tagcgaagct gcggtagcga
    17521 gttgcgtttt taactcaccg tagagtggtg cgaaacgacg gttaaaaccg accatcaacg
    17581 tcagtttttt ccgcgccgcc agttccacca gccgttcagc atcgcgcaga ttttctgcca
    17641 gcggtttatc gacacagaca tgtacacccg cattgagtaa cgtactgacc acgtcaaagt
    17701 ggctggcggt gctggaatgc acaaaaaccg catcgcaact ggcggcaagg ctggataacg
    17761 aatcggcata aggaatgcgc cagctttcac aaattggcag ggctttcgcg cgcgtaggcg
    17821 accaggctcc ttgtaacatc cagtcagacg ctgccgccag caccggtaac cacgcttttt
    17881 gcgcaatgcc gcctaatccc acaacgccga tacgtaattt tttcacttta atctcccaga
    17941 tgggccagca acgaatcaag acgctgtttc agttctgcca cttcgatttc cagggcttcg
    18001 acgcgggcct gtaaatcacc atcaaccgcg ttcgacatat ccgttaccgc cggctgatcc
    18061 tctacctcac cactgaaaag atgcatgtag cggctttcgc gtttacccgg ttcgcgggcc
    18121 agacgcacca caaaaggacc atcttcgcga tttgccagtt gttccagcgt cgactccaat
    18181 tccgccatat cgctgaattc atacattcgc gcggcgcggc tgcgcagttc acccggcgtc
    18241 tgggcaccac gcaataacaa cgtggtgatt aacgccactt ccgctgcgct cagtttcaga
    18301 tcgccaaatt ctgaattaca aaaacgttgt tcatatttgg tgacccgatt accaaagcca
    18361 ctcaccgtgc gcagataatg gcgtttgacc agattatcca gttgctcctg cacttcagat
    18421 tcactcagat tcatgaccgg ttcacggttc gttttctgat tacaggccgt gactacacca
    18481 ttgactgaga gcgggtattg ctccggcgtg gtcacctgct tttccagcaa gcaaccaatc
    18541 acgcgagctt caagggcagt aagttgatat ttcatgagat tctccttagc ggccgggcgt
    18601 ccagtctggg gtagttaatg ccgtcagtac gtgatcgcgc cattgtccat caatcaacag
    18661 atagtctttc gcatagcctt ctttttcaaa acccagtcgc gccagtaaat caccgctgcg
    18721 tttattgtgc ggcatataat tagccataat gcgatgaata tgttgggtgc gctgcatata
    18781 acgaatggct gcggtcaggg cttcaaacat gagtcctttg ccctgccatt tttgcccaat
    18841 cgaataaccg agatagcagg catgaaaaga gccacgaaca acattggaaa aattggcaac
    18901 gccaataatc tctttttcgt ccgggtcgaa taagccaaag tagaaagctg aaccttgttt
    18961 atgaaattcg ttaatcatcc ccagcctggc ctgccagcct gatggataac agtggctttc
    19021 gtcgcgcact ggctcccagg gcttgaggaa atggcgattc tctgcgtaat aatccgcaag
    19081 acgccaggca tcacgatcat gcaccagacg cacgaccagt cggtctgtgg ttaagcgcac
    19141 ttttggcacg ttactgcgat agccaaacat tctataccta ctccttcccg taacgtcttt
    19201 aatacgctgt aagtattact atacctgcgc aaccagaccc tgtgaaaagt ccaaaatgcc
    19261 attttctgca ttattcacat atttgataaa aactctctat caaagcgacg ttttgataaa
    19321 aaaatattgt ccccgaagtg atgggaaaag tcttagcggc aatgcagaat agaaagtgct
    19381 catcttttat ttcccgggag gggaaatgtc ccgcgtatcg caggcgagga acctgggtaa
    19441 atatttcctg ctcatcgata atatgctggt cgtgctgggg ttctttgttg tcttcccgct
    19501 gatctctatc cgcttcgttg atcaaatggg ctgggccgcc gtcatggtcg gtattgctct
    19561 cggtctacgc cagtttattc agcaaggtct gggtattttc ggcggcgcaa ttgccgaccg
    19621 ctttggtgcc aaaccgatga ttgttaccgg tatgctgatg cgcgccgccg gattcgccac
    19681 aatgggtatc gcccacgaac cgtggctatt gtggttttca tgcctgctct cgggactcgg
    19741 cggcacgttg tttgatccgc cgcgttcggc gctggtggtg aaactaatcc gtccacaaca
    19801 acgtggtcgt tttttctcgc tgttgatgat gcaggacagt gccggtgcgg tcattggcgc
    19861 attgttgggg agctggctgt tgcaatacga ctttcgcctg gtctgcgcca caggggccgt
    19921 tttgtttgtg ctgtgtgcgg cgttcaatgc gtggttgtta ccggcatgga aactctccac
    19981 cgtacgcacg cccgttcgcg aaggcatgac ccgcgtgatg cgtgacaagc gttttgtcac
    20041 ctatgtcctg acgctggcgg gttactacat gctggctgta caagtgatgc tgccaattat
    20101 ggtcaacgac gtggctggcg cgccctctgc cgttaaatgg atgtatgcca ttgaagcgtg
    20161 tctgtcgtta acgttgctct accctatcgc ccgctggagt gaaaagcatt ttcgtctgga
    20221 acaccggttg atggctgggc tgttgataat gtcattaagc atgatgccgg tgggcatggt
    20281 cagcggcctg caacaacttt tcaccctgat ttgtctgttt tatatcgggt cgatcattgc
    20341 cgagcctgcg cgtgaaacct taagtgcttc gctggcggac gcaagagctc gcggcagcta
    20401 tatggggttt agccgtctgg gtctggcgat tggcggcgct attggttata tcggtggtgg
    20461 ctggctgttt gacctgggca aatcggcgca ccagccagag cttccgtgga tgatgctggg
    20521 aattattggc atcttcactt tccttgcgct gggttggcag tttagtcaga aacgcgccgc
    20581 gcgtcgtttg ctggaacgcg acgcctgatt tgatactccc ccctgactcc tccatactga
    20641 aagtgaactg acagccaaat ggaggagtca cgtgaagcta tacatttacg atcactgccc
    20701 ttactgcctc aaagcccgca tgattttcgg cctgaaaaat atccccgtcg aattacatgt
    20761 tctgctcaac gacgacgcag aaacacccac ccggatggtc ggtcaaaaac aggttcccat
    20821 tctgcaaaaa gatgacagcc gctatatgcc agaaagcatg gatatcgttc actatgtcga
    20881 taaactcgac ggcaaaccgt tactgaccgg caaacgttcc cctgccattg aagagtggct
    20941 gcgcaaggtc aatggctacg ccaacaaact gctgttgccg cgttttgcca aatcggcatt
    21001 tgatgagttt tctactcccg ccgcgcgcaa atatttcgtc gacaagaaag aggccagcgc
    21061 gggtaatttt gccgacctgc tggcccactc tgacggtctg attaagaata tcagcgatga
    21121 tttgcgtgcg ctggacaaac tgatcgtcaa accgaacgcc gtgaatggag aactttcgga
    21181 agatgatatt cagctatttc cgctactgcg taatctgacg ctggtagccg gaatcaactg
    21241 gccaagccgc gttgctgatt accgcgataa tatggcgaaa cagacacaaa tcaatttgtt
    21301 atcatcaatg gcgatttaat cctgacccgc cgcggcagcc tgtattcgcg ggttgccgcc
    21361 gttttcagtt ttttctgctg gcgattttat cgctggtgac acatgctgcg ttgtgtcagg
    21421 atattgacgc agatttcatg tcgaggacta ccatgaacaa gtttttattt gccgctgcat
    21481 tgatcgtcag tggcctgctc gttggctgta atcaactcac ccaatacacc atcaccgaac
    21541 aagaaattaa ccagtcgctt gcgaaacata ataatttctc aaaagatatc ggtttacccg
    21601 gcgtggctga cgcccatatt gttctgacaa acttgaccag ccaaattggt cgcgaagagc
    21661 cgaataaggt taccctaacc ggagacgcca atctggacat gaactccctg ttcggtagtc
    21721 agaaagcgac catgaaactg aagctgaaag cgctgcccgt gtttgataaa gaaaaaggtg
    21781 cgatcttcct gaaagagatg gaagtggtcg atgcgacggt acaaccggaa aaaatgcaaa
    21841 cggtgatgca aacgttgctt ccctatttga accaggcatt acgcaattac tttaaccagc
    21901 aacctgctta cgtcctgcgc gaagatggca gtcagggcga agcaatggcg aaaaaactgg
    21961 cgaaaggcat tgaagtgaag ccaggcgaaa ttgtcattcc gtttacggat taatgacgag
    22021 ggcgcattcg cgccctttat ttttcgtgca aaggaaaacg tttccgctta tcctttgtgt
    22081 ccggcaaaaa catcccttca gccggagcat agagattaat gactgcacca tcccaggtat
    22141 taaagatccg ccgcccagac gactggcacc ttcacctccg cgatggcgac atgttaaaaa
    22201 ctgtcatgcc gtataccagc gaaatttatg gacgggctat tgtaatgccc aatctggctc
    22261 cgcccgtgac cactgttgag gctgccgtgg cgtatcgcca gcgtattctt gatgccgtac
    22321 ctgccgggca caatttcacc ccattgatga cctgttattt aacagattcg ctggatccta
    22381 atgagctgga gcgcggattt aacgaaggcg tgttcaccgc tgcaaaactt tatccggcaa
    22441 acgcaaccac taactccagc cacggcgtga cgtcaattga cgcaatcatg ccggtacttg
    22501 agcgcatgga aaaaatcggt atgccgctac tggtgcatgg tgaagtgaca catgcagata
    22561 tcgacatttt tgatcgtgaa gcgcacttta tagaaagcgt gatggaacct ctgcgccagc
    22621 gcctgactgc gctgaaagtc gtttttgagc acatcaccac caaagatgct gccgactatg
    22681 tccgtgacgg aaatgaacgg ctggctgcca ccatcactcc gcagcatctg atgtttaacc
    22741 gcaaccatat gctggttggt ggcgtgcgtc cgcacctgta ttgtttaccc atcctcaaac
    22801 gcaatattca ccaacaggca ttgcgtgaac tggtcgccag cggttttaat cgagtattcc
    22861 tcggtacgga ttctgcgcca catgcacgtc atcgcaaaga gagcagttgc ggctgcgcgg
    22921 gctgcttcaa cgccccaacc gcgctgggca gttacgctac cgtctttgaa gagatgaatg
    22981 ctctgcagca ctttgaagca ttctgttctg taaacggccc gcagttctat ggcttgccgg
    23041 tcaacgacac attcatcgaa ctggtacgtg aagagcaaca ggttgctgaa agcatcgcac
    23101 tgactgatga caccctggtg ccattcctcg ccggggaaac ggtacgctgg tccgttaaac
    23161 aataaaaatc gtagcttcct gttgtcatta ggttatttta cctgtataaa taaccagtat
    23221 attcaacagg gggctattat gcgaattgaa gtcaccatag cgaaaacttc tccattgcca
    23281 gctggggcta ttgacgccct ggctggcgaa ctttcccgcc gtattcagta tgcgtttcct
    23341 gataatgaag gccacgtatc ggtacgttat gccgcagcga ataatttatc ggttattggc
    23401 gtaacaaaag aagataaaca gcgcattagc gaaattctcc aggaaacgtg ggaaagcgcc
    23461 gatgactggt ttgtcagcga ataatatgca gtgatttttg tttttgccgg gtcgccccgg
    23521 cttttttatt ttacttacaa attttgagta caaaatttct acacttcctc aaaataattg
    23581 cacaatatgc taaaaaaata tgaatgacat gctgttttat tgttcatata aatcttaaaa
    23641 gcagaaattt atctgttccc ccctttaaaa attcggtgaa tacccttact tattggtata
    23701 ctgaagttgc ttcagataaa aacgcattga acctcgaata acgttgtcta gtaacacgaa
    23761 ttagggggcc atgatggaaa aaaataatga agtcattcag actcatccgc tcgtagggtg
    23821 ggacatcagc accgttgata gctatgatgc gctgatgttg cgtttgcact accagacccc
    23881 aaataagtcc gagcaggaag ggactgaagt tggtcagacg ctctggttaa ccactgatgt
    23941 tgccagacaa tttatttcga tattagaagc aggaatcgcc aaaattgaat ccggtgattt
    24001 cccggtaaac gagtatcggc gtcattaaca tgacatgacc atccacccaa aaggcacctc
    24061 accggtgcct ttaccatttc tgggttgtat atctgcattc agttaattac tctgcttaaa
    24121 ccatgagagc agagagaaaa aaatgaaata cgatctcatc attattggca gcggttccgt
    24181 aggcgctgcc gccgggtatt atgcaacccg cgccggttta aacgtgctaa tgaccgacgc
    24241 ccatatgcca ccgcatcaac acggcagcca ccacggcgat acgcgattaa ttcgccatgc
    24301 ttatggtgaa ggcgaaaagt atgtcccgtt ggtcctccgc gcgcaaacgc tgtgggatga
    24361 actttcccgc cacaacgaag atgatcccat ttttgtacgc tctggtgtca ttaacctcgg
    24421 cccggctgac tccgcatttc tcgccaacgt cgcccacagc gccgaacagt ggcaactcaa
    24481 cgttgaaaag ctcgatgcgc aagggattat ggcccgctgg ccagaaatac gcgtcccgga
    24541 caactacatc ggcttatttg agactgattc cggttttttg cgcagcgaac tggcgattaa
    24601 aacctggatc caactggcga aggaagcggg ctgtgcgcaa ctgttcaact gcccggtcac
    24661 cgcaattcgt catgacgatg atggcgtaac tattgaaacc gttgacggtg agtatcaggc
    24721 gaaaaaagcg attgtctgcg cgggaacatg ggtaaaagac ctgctcccgg agctgcctgt
    24781 ccagcctgta cgtaaagtat ttgcctggta tcaggccgat ggccgctata gcgtgaagaa
    24841 taaattcccg gcgtttaccg gtgaactgcc caatggcgat caatattatg gttttccggc
    24901 agaaaacgac gcgttgaaga ttggcaaaca taacggaggc caggttatcc attcagcgga
    24961 tgaacgtgtt ccgtttgcgg aagtggtcag cgatggttcg gaagccttcc cgttcttgcg
    25021 caatgtattg ccgggtatcg gttgctgcct gtacggcgct gcctgcacct atgataattc
    25081 gcctgacgaa gattttatta tcgataccct acccggccac gataatacac tgctcattac
    25141 cggcctgagt gggcacggtt ttaaatttgc gtcagtttta ggggaaatag ctgccgattt
    25201 tgcgcaagac aaaaaaagcg attttgattt gacgccattc aggctttccc gcttccaata
    25261 atcatcatta cggcctccag aatgaggccg tttttacagg agtatttaat gcgtcggctg
    25321 ttgcactatc tcatcaataa tattcgcgag catctgatgc tttatctttt tctctgggga
    25381 ttgttggcaa ttatggatct gatctatgtg ttttattttt agttttccgc actgacataa
    25441 actgacaaat atttaatctc cctttcattt agcgtgaaaa attgaatgag attattcctg
    25501 cttctacagc actcaccaga catctctgat gctgaaccca ctaaacttat gaagattctt
    25561 tcattattaa ttcaaaatta ttgaaataaa aataaatatc attcaatttg ttatttttgt
    25621 gttgcaattc attctccgac acgccatttt ctttctctcg caaattcgta ttggatgcac
    25681 ttatgtcatt cacaaatacc cctgaacgct atggtgttat atctgcggcc ttccattggc
    25741 taagcgcaat tattgtctac ggcatgttta ctttaggtct gtggatggtc acgctcagtt
    25801 attacgatgg ctggtatcac aaagcacccg aactgcataa aagcatcggt attttgttaa
    25861 tgatggggct ggttattcgc gttctgtggc gtgtcatatc tccaccgccg ggtccgctgc
    25921 cgagttattc gcccatgact cgtcttgccg caaaggctgg acatctcgca ttgtacctat
    25981 tgctgttcgc catcggcatc agcggctatc tgatctcaac tgccgatggt aaaccgatca
    26041 gcgtttttgg ctggtttgac gtccccgcga cccttgccga cgctggcgca caggcagact
    26101 ttgccggtgc cctgcatttt tggctcgcgt ggagcgtcgt agtactgtcc gttatgcacg
    26161 gatttatggc cctgaagcat catttcatcg ataaagacga cactctgaag cgcatgctgg
    26221 gaaagtcgtc atctgactat ggagtataaa aaatgaaaaa aagcctgctt ggtttaacct
    26281 tcgcgtccct gatgttctct gccggttcag cggttgccgc cgattacaaa attgacaaag
    26341 aaggtcagca cgcctttgtt aatttccgca tccagcacct tggctatagc tggttatacg
    26401 gcacctttaa agatttcgac ggtactttta cctttgacga aaaaaatccg gctgccgata
    26461 aagtgaatgt gacaattaac accaccagcg tcgatactaa tcacgccgaa cgcgataaac
    26521 atcttcgcag tgcagatttc ctcaataccg caaaatatcc acaggcaaca ttcacctcca
    26581 ccagcgtgaa gaaagacggt gacgaactgg atattaccgg cgatctgacg ctgaatggcg
    26641 taaccaaacc cgtcacgctg gaagcgaaat taattggtca gggcgacgac ccatggggtg
    26701 gtaaacgtgc aggcttcgag gccgaaggca aaattaagct caaggacttc aatatcaaga
    26761 cagatttagg tccagcttct caggaagtgg atctgattat ttcagtggaa ggcgtacagc
    26821 agaagtaagc gtgaaatgtt gccggatggc acgcatccgg caatgatatt tattctgttg
    26881 gatcaggaat gcccagtgtt gtattcagac gtccacgaga cttattaaag atcttattgc
    26941 cattttcacg tcctgcccga cggcgtcgct gttcttctgg cggtaacgcg ctttcttcgc
    27001 agcaaatctc actacaacaa cctttgtatt tttccgcgca tactggacac tgaataaaca
    27061 gcaggtggca gccatcattt ttacagttgg tatggctgtc gcacggcgcg ccgcactggt
    27121 ggcaatgcgc gataatctca tccgatatac gttcgcccat ccgctcgtca aaaacaaaat
    27181 ttttgccaat aaaacgcacc ggcaagccct gctcgcgcgc cttacgggcg tattcaataa
    27241 ttccgccctc gatatgccag actttgttga atccgttatg tttcatccaa gcactggcct
    27301 tttcacaacg aatgccgccg gtgcagtaca tgacgatttt tttatcttta tgtgcctgca
    27361 tcatctcgac tgcttttggc agctgctcac ggaaggtatc tgccggaatt tcgaacgcgt
    27421 tttcaaagtg ccccacttca tactcatagt ggttac
//
LOCUS       DAJVSY010000041        27203 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.041, whole genome shotgun sequence.
ACCESSION   DAJVSY010000041 DAJVSY010000000
VERSION     DAJVSY010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27203
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.041"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(37..1335)
                     /gene="eno"
                     /locus_tag="OQQ19_001573"
     CDS             complement(37..1335)
                     /gene="eno"
                     /locus_tag="OQQ19_001573"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HCS1803238.1"
                     /translation="MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTG
                     SREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTEN
                     KSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHA
                     DNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGS
                     NAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHF
                     LEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKG
                     IANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQI
                     KTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA"
     gene            complement(1423..3060)
                     /gene="pyrG"
                     /locus_tag="OQQ19_001574"
     CDS             complement(1423..3060)
                     /gene="pyrG"
                     /locus_tag="OQQ19_001574"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HCS1803239.1"
                     /translation="MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPY
                     INVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRK
                     ERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQM
                     AVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPA
                     NERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEW
                     EQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVE
                     TRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARH
                     VANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVD
                     DSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPW
                     FVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK"
     gene            complement(3288..4079)
                     /gene="mazG"
                     /locus_tag="OQQ19_001575"
     CDS             complement(3288..4079)
                     /gene="mazG"
                     /locus_tag="OQQ19_001575"
                     /EC_number="3.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
                     /protein_id="HCS1803240.1"
                     /translation="MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVL
                     DAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFAD
                     SSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWT
                     TLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQK
                     ANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL"
     gene            complement(4150..4485)
                     /gene="mazF"
                     /locus_tag="OQQ19_001576"
     CDS             complement(4150..4485)
                     /gene="mazF"
                     /locus_tag="OQQ19_001576"
                     /EC_number="3.1.27.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endoribonuclease MazF"
                     /protein_id="HCS1803241.1"
                     /translation="MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTG
                     MCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKRIAWRARGATKKGTVAPEELQLI
                     KAKINVLIG"
     gene            complement(4485..4733)
                     /gene="mazE"
                     /locus_tag="OQQ19_001577"
     CDS             complement(4485..4733)
                     /gene="mazE"
                     /locus_tag="OQQ19_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin MazE"
                     /protein_id="HCS1803242.1"
                     /translation="MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLII
                     EPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW"
     gene            complement(4811..7045)
                     /locus_tag="OQQ19_001578"
     CDS             complement(4811..7045)
                     /locus_tag="OQQ19_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase"
                     /protein_id="HCS1803243.1"
                     /translation="MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQ
                     QTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKS
                     VVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHL
                     REVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLL
                     HERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDV
                     RAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTV
                     EIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGE
                     MLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP
                     FTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAG
                     RQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNK
                     PSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGF
                     ITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRD
                     ITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR
                     LHGS"
     gene            complement(7093..8394)
                     /gene="rlmD"
                     /locus_tag="OQQ19_001579"
     CDS             complement(7093..8394)
                     /gene="rlmD"
                     /locus_tag="OQQ19_001579"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HCS1803244.1"
                     /translation="MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGL
                     LPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQR
                     SKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVK
                     QCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREK
                     LERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVA
                     SALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ
                     NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPA
                     TLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK"
     gene            8451..11207
                     /gene="barA"
                     /locus_tag="OQQ19_001580"
     CDS             8451..11207
                     /gene="barA"
                     /locus_tag="OQQ19_001580"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase BarA"
                     /protein_id="HCS1803245.1"
                     /translation="MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDA
                     GASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFH
                     LDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYI
                     ALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRR
                     GQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQN
                     VELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTI
                     ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTL
                     NIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIR
                     DTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNR
                     GSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYS
                     PTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKL
                     KQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKL
                     IGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQ
                     QTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPE
                     VNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGL
                     VDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREAS
                     KILG"
     gene            complement(11439..12779)
                     /gene="gudD"
                     /locus_tag="OQQ19_001581"
     CDS             complement(11439..12779)
                     /gene="gudD"
                     /locus_tag="OQQ19_001581"
                     /EC_number="4.2.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="HCS1803246.1"
                     /translation="MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIMIIK
                     DNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQ
                     TFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGDRKAT
                     PLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAE
                     SIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMA
                     EFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGL
                     TWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQV
                     PEKPGLGVEIDMDQVMKAHELYQKHGLCARDNAMGMQYLIPGWTFDNKRPCMVR"
     gene            complement(12800..14140)
                     /locus_tag="OQQ19_001582"
     CDS             complement(12800..14140)
                     /locus_tag="OQQ19_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708582.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="HCS1803247.1"
                     /translation="MTTQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTD
                     NAGHTGIGEAPGGEVIYQTLVDAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGA
                     WTFELHVNAVAALEAALLDLLGKALNVPVCELLGPGKQRETITVLGYLFYIGDRTKTD
                     LPYLENTPGNHEWYQLRHQKAMNSEAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDT
                     VRALKKRFPDARITVDPNGAWLLDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAE
                     FRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLT
                     WGCHSNNHFDISLAMFTHVGAAAPGNPTAIDTHWIWQEGDCRLTKNPLEIKNGKIAVP
                     DAPGLGVELDWEQVQKAHEAYKRLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH"
     gene            complement(14142..15512)
                     /gene="gudP"
                     /locus_tag="OQQ19_001583"
     CDS             complement(14142..15512)
                     /gene="gudP"
                     /locus_tag="OQQ19_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactarate/glucarate/glycerate transporter
                     GudP"
                     /protein_id="HCS1803248.1"
                     /translation="MFRSATTSSLSQAASSVEKRTNARYWIVVMLFIVTSFNYGDRAT
                     LSIAGSEMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWS
                     MFTLLQGFVDIFSGFGIIVALFTLRFLVGLAEAPSFPGNSRIVAAWFPAQERGTAVSI
                     FNSAQYFATVIFAPIMGWLTHEVGWSHVFFFMGGLGIVISFIWLKVIHEPNQHPGVNQ
                     KELEYIAAGGALINMDQQNTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYF
                     FITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKT
                     PIVMGMLLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSG
                     GLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALIAVLSYLVLVGDIKRIEL
                     KPVAGQ"
     gene            complement(15929..16378)
                     /locus_tag="OQQ19_001584"
     CDS             complement(15929..16378)
                     /locus_tag="OQQ19_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin"
                     /protein_id="HCS1803249.1"
                     /translation="MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDW
                     LPYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCN
                     GGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEQWGTLLS"
     gene            complement(16396..17178)
                     /gene="truC"
                     /locus_tag="OQQ19_001585"
     CDS             complement(16396..17178)
                     /gene="truC"
                     /locus_tag="OQQ19_001585"
                     /EC_number="5.4.99.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(65) synthase TruC"
                     /protein_id="HCS1803250.1"
                     /translation="MLEILYQDEWLVSVNKPSGWLVHRSWLDRDEKVVVMQTVRNQIG
                     QHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDY
                     PLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGR
                     KHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLT
                     IHAGLDDTWMQALSQFGWRGLLPENERVEFSAPSGQDGEISS"
     gene            complement(17178..17507)
                     /locus_tag="OQQ19_001586"
     CDS             complement(17178..17507)
                     /locus_tag="OQQ19_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqcC family protein"
                     /protein_id="HCS1803251.1"
                     /translation="MTTHDRVRLQLQALEALLREHQHWRNDEPQPHQFNSTQPFFMDT
                     MEPLEWLQWVLIPRMHDLLNNNQPLPGAFAVAPYYEMALATDHPQHALILAELEKLDA
                     LFADDAS"
     gene            complement(18129..18674)
                     /gene="syd"
                     /locus_tag="OQQ19_001587"
     CDS             complement(18129..18674)
                     /gene="syd"
                     /locus_tag="OQQ19_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SecY-interacting protein"
                     /protein_id="HCS1803252.1"
                     /translation="MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIIST
                     TEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQ
                     TWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGT
                     RKRTHLASNLAEFLNQLKPLL"
     gene            18742..19590
                     /gene="queF"
                     /locus_tag="OQQ19_001588"
     CDS             18742..19590
                     /gene="queF"
                     /locus_tag="OQQ19_001588"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HCS1803253.1"
                     /translation="MSSYANHQALAGLTLGKSTDYRDTYDASLLQGVPRSLNRDPLGL
                     KADNLPFHGTDIWTLYELSWLNAKGLPQVAVGHVELDYTSVNLIESKSFKLYLNSFNQ
                     TRFNNWDEVRQTLERDLSTCAQGKISVALYRLDELEGQPIGHFNGTCIDDQDITIDNY
                     EFTTDYLENATCGEKVVEETLVSHLLKSNCLITHQPDWGSIQIQYRGRQIDREKLLRY
                     LVSFRHHNEFHEQCVERIFNDLLRFCQPEKLSVYARYTRRGGLDINPWRSNSDFVPST
                     TRLVRQ"
     gene            19702..21066
                     /gene="ppnN"
                     /locus_tag="OQQ19_001589"
                     /gene_synonym="ygdH"
     CDS             19702..21066
                     /gene="ppnN"
                     /locus_tag="OQQ19_001589"
                     /gene_synonym="ygdH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide 5'-monophosphate nucleosidase"
                     /protein_id="HCS1803254.1"
                     /translation="MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNS
                     GSLTDNSKELLSRFENFDINVLRRERGVKLELINPPEEAFVDGRIIRALQANLFAVLR
                     DILFVYGQIHNTVRFPNLNLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSIN
                     ENEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPS
                     IIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPA
                     NKDQVLPLILTGPKESADYFRVLDEFVVHTLGENARRHYRIIIDDAAEVARQMKKSMP
                     LVKENRRDTGDAYSFNWSMRIAPDLQMPFEPSHENMANLKLYPDQPVEVLAADLRRAF
                     SGIVAGNVKEVGIRAIEEFGPYKINGDKEIMRRMDDLLQGFVAQHRMKLPGSAYIPCY
                     EICT"
     gene            21623..22912
                     /gene="sdaC"
                     /locus_tag="OQQ19_001590"
     CDS             21623..22912
                     /gene="sdaC"
                     /locus_tag="OQQ19_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease SdaC"
                     /protein_id="HCS1803255.1"
                     /translation="METTQTSTIASKDSRSAWRKTDTMWMLGLYGTAIGAGVLFLPIN
                     AGVGGMIPLIIMAILAFPMTFFAHRGLTRFVLSGKNPGEDITEVVEEHFGIGAGKLIT
                     LLYFFAIYPILLVYSVAITNTVESFMSHQLGMTPPPRAILSLILIVGMMTIVRFGEQM
                     IVKAMSILVFPFVGVLMLLALYLIPQWNGAALETLSLDTASATGNGLWMTLWLAIPVM
                     VFSFNHSPIISSFAVAKREEYGDMAEQKCSKILAFAHIMMVLTVMFFVFSCVLSLTPA
                     DLAAAKEQNISILSYLANHFNAPVIAWMAPIIAIIAITKSFLGHYLGAREGFNGMVIK
                     SLRGKGKSIEINKLNRITALFMLVTTWIVATLNPSILGMIETLGGPIIAMILFLMPMY
                     AIQKVPAMRKYSGHISNVFVVVMGLIAISAIFYSLFS"
     gene            22970..24337
                     /gene="sdaB"
                     /locus_tag="OQQ19_001591"
     CDS             22970..24337
                     /gene="sdaB"
                     /locus_tag="OQQ19_001591"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase II"
                     /protein_id="HCS1803256.1"
                     /translation="MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTR
                     VVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDSIPGFIQDVNTHGRLMLANGQ
                     HEVEFPVDQCMNFHADNLSLHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQ
                     DSAPVEVPYPYSSAADLQKHCQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRG
                     GIERGISTEGVLPGKLRVPRRAAALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENA
                     AGGRVVTAPTNGACGIIPAVLAYYDKFIREVNANSLARYLLVASAIGSLYKMNASISG
                     AEVGCQGEVGVACSMAAAGLAELLGASPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPC
                     IERNAIAAVKAVNAARMALRRTSEPRVCLDKVIETMYETGKDMNAKYRETSRGGLAMK
                     IVACD"
     gene            24449..25204
                     /gene="xni"
                     /locus_tag="OQQ19_001592"
     CDS             24449..25204
                     /gene="xni"
                     /locus_tag="OQQ19_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417278.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flap endonuclease Xni"
                     /protein_id="HCS1803257.1"
                     /translation="MAVHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIMHSQPTH
                     AVAVFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNE
                     ADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGV
                     QPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKKL
                     ETHKEMAFLCRDIARLQTDLHIDGNLQQLRLVR"
     gene            complement(25309..26446)
                     /gene="fucO"
                     /locus_tag="OQQ19_001593"
                     /pseudo
     CDS             complement(25309..26446)
                     /gene="fucO"
                     /locus_tag="OQQ19_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417279.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lactaldehyde reductase"
     gene            complement(26474..27121)
                     /gene="fucA"
                     /locus_tag="OQQ19_001594"
     CDS             complement(26474..27121)
                     /gene="fucA"
                     /locus_tag="OQQ19_001594"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HCS1803258.1"
                     /translation="MERNKLARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTG
                     IPYEKLTESHIAFIDGNGKHEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVS
                     ILNRPIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVALALKNRKATLLQHHGLIAC
                     EVNLEKALWLAHEVEVLAQLYLTTLAITDPVPVLSDEEIAVVLEKFKTYGLRIEE"
BASE COUNT         6579 a         7294 c         6555 g         6775 t
ORIGIN      
        1 cggaggctgg catttttaaa tcagataaag tcagtcttat gcctggcctt tgatctcttt
       61 acgaccgttg tacggtgctt tttcgcccag agcttcttcg atacgaatca gctggttgta
      121 tttagcaaca cggtcagaac ggctcataga accagttttg atctggcctg cagcagtacc
      181 aacagccagg tcagcgatgg tagcgtcttc agtttcgcca gaacggtgag agataactgc
      241 agtgtagcca gcatctttcg ccatcttgat tgcagccaga gtttcggtca gagaaccgat
      301 ctggttgaat ttgatcagga tggagttagc gatacctttt tcgatacctt ctttcaggat
      361 cttggtgttg gttacgaaca ggtcgtcacc aaccagctgg attttgtcgc ccagaacttt
      421 ggtctggtat gcgaaaccgt cccagtcaga ttcgtccaga ccgtcttcga tagaaacgat
      481 cgggtactgt ttggtcagtt cttccaggaa gtgagtgaat tcttcagagg tgaacgcttt
      541 gttgccttcg ccagccagaa cgtatttacc atctttgtag aattcagaag ctgcgcagtc
      601 catcgccaga gtgatgtctt tgcccagttc ataaccagca gctttaacag cttcagcgat
      661 aacagccaga gcttcagcgt tggaacccag gttcggcgca tagccacctt cgtcaccaac
      721 agcagtgttc atgcctttcg ctttcagaac ttttgccagg tgatggaaaa cttcagaacc
      781 catgcggatg gcttctttca cagttttcgc gccaaccggc tgaatcatga attcctggat
      841 atcaacgttg ttgtcagcgt gctcaccacc gttgatgatg ttcatcatcg gaaccggcat
      901 agagtatttg cccggagtac cgttcagttc agcgatgtgc tcgtacagcg gcataccttt
      961 agcagctgca gcagctttgg cgttagccag agatacagcc aggattgcgt tcgcgccgaa
     1021 tttggatttg ttttcggtgc cgtccaggtc gatcatgatc ttgtcaatgc cagcctgatc
     1081 tttagcatct ttgccaatca gcgcctgagc gatcgggccg tttaccgcag caacagcttt
     1141 ggttacgcct ttacccagga aacgggattt gtcgccatcg cgcagttcca gagcttcacg
     1201 ggaaccagta gaagcacctg acggagcagc tgccataccg acgaaaccac cctccagatg
     1261 tacttcggct tcaacagtcg ggttaccacg ggagtcgatg atttcacgac cgatgatttt
     1321 tacgattttg gacattaggt tttcctcaag tcactagtta aactgaaact ccagacaaac
     1381 aacacgtacc cagggtacgc gttgccgttc taactttttt acttacttcg cctgacgttt
     1441 ctggaactcg ctggcggctt tcacaaagcc tgcaaacagc gggtgaccat cacgtggagt
     1501 agaagtaaac tccggatgga actggcaagc cacgaaccac gggtgattcg gaacttcgat
     1561 gatctcgacc aactgatcat ccccggaacg gcccgcaacg cgcagacctg catcttcaat
     1621 ctgtttcaac agcatgttgt tgacttcgta acggtgacga tgacgctcaa caattgtcgg
     1681 cgcattgtac agctggcgaa ccaggctatc gtcaaccaac tggcactgct gtgcgccgag
     1741 acgcatggta ccgccgagat cgctcttctc gctacgaact tcaacgttgc cgttttcatc
     1801 gcgccactcg gtaatcagcg ccacaaccgg gtacttacag tctggcacaa attccgtaga
     1861 gttggcgttc tccatgttgg caacatggcg agcgtaatca attaacgcca cctgcatacc
     1921 caggcaaatg cccagataag gaatattgtt ctcacgcgca aaacgcgcgg tcgtaatcat
     1981 gccttctacg ccacgatagc cgaaaccgcc aggtacgagg attgcgtcca gacctttaag
     2041 gatttcaacg ccgcgcgttt caacatcttg tgaatcgatc agtttgatgt tgacgctgac
     2101 acgattcttc agcccaccgt gtttcagtgc ttcgatcact gatttataag catccggcag
     2161 ttcaatgtac ttgccgacca taccgatggt gacttcactt accgggttcg cttcttcgaa
     2221 gataacctgt tcccattcgg acagattcgc ttccgggcag tttaagctga atcgtttaca
     2281 aatataatcg tccagcccct gagatttcaa caggcccgga attttataga tggaatcgac
     2341 gtctttcaga gaaataaccg ctttttccgg aacattacag aacaatgcaa tcttcgcacg
     2401 ttcgttcgcc ggaacagcgc gatctgaacg acaaatcagg atgtcaggct ggataccgat
     2461 ggagagcagc tcttttacag agtgctgagt cggtttggtt ttgacttcac cagacgctgc
     2521 catgtacggc accagcgtca ggtgcataaa cagagtgtgc tcacggccaa tttcaacagc
     2581 catctggcga atcgcttcga ggaacggcaa ggattcgata tcacctactg taccgccgat
     2641 ttctaccagt actacgtcat gaccttcgcc accttccagc acgcgctctt tgattgcgtt
     2701 agtgatgtgc ggaataacct gcacggttgc gccgaggtag tcaccgcggc gttctttacg
     2761 cagaacgtca gagtagatac gacccgtggt gaagttgttg cggcggctca ttttggtacg
     2821 aatgaaacgc tcgtagtgcc ccaggtccag gtcggtttca gcgccgtctt cagtaacgaa
     2881 cacttccccg tgttggattg ggctcatagt acctggatcg acgttgatgt acggatccag
     2941 tttcatgatg gtcacattga ggccacgggc ttcaagaatg gctgcgaggg aggctgcggc
     3001 aatgccttta cccagagagg atacgacccc gccggtcaca aaaatatagt tcgttgtcat
     3061 gctgaacctg agaagttagg ttgaaaagac gatggaataa ccaggacggg aaagcagtat
     3121 acccgaacat gacctgtgcc acaaactttc attatccctc ctcttcgcca gcgcactatt
     3181 gaaatcagga gtgagaaaat agcccctttg gggtaaatgt ttttgacgca aatcaagcgc
     3241 ttgtcattta aaaaatgaca caaatggcac ttgaccgcgt aattccctta gagatcaatt
     3301 tcctgccgtt ttacctgttg ccagacttct tccattgttt cgaggtcaac acctgtcatt
     3361 tccagtccac gcgcggcaac aatacgctcc acttcgcgaa aacgacgctc gaatttttcg
     3421 ttcgcttttt gcaatgcgat ttctgctttc gtccctaaat ggcgagccag attaaccgtg
     3481 gcaaacagca ggtcccccat ttcctcctcc agtttagcct ggtcgacaac agcctgccgc
     3541 gcttcgtaca tcacctcgtc gatctcttcg tagactttat caaccaccgg gccaagcgtc
     3601 gtccagtcga agccaacgtt ggcgcaacgt ttctggattt tttgcgcccg cattaaagcc
     3661 ggtaaactac gaggaatatc gtccagcgcc gaatgctgcg ctttctgcgc gcgctcttcg
     3721 gttttgattt gctcccaacg ggcaagcact tcactactgt tttcggcaga actatcagca
     3781 aaaacatgcg gatggcgacg ctctaattta tcgctaatag cagcgcaaat atcattaaag
     3841 tcaaagcgcc cttcttcctg agccatttgc gcgtaaaaca ccacctggaa tagcagatcg
     3901 cccagttcac cgcgaagatc gtcaaaatct tcacgggcga tggcgtccag cacttcgtag
     3961 gtttcttcaa gggtgtaagg cgcaatggtg gcaaatgtct gctctttatc ccacgggcag
     4021 ccgttttccg gatcgcgcag gcgctgcata atagtgagca aacgatcgat ttgattcatt
     4081 gaattgtcct gaaaattgcg ggtctgtcag gtggaaacct gtgaccagaa tagaagtgag
     4141 ttagtaacac tacccaatca gtacgttaat tttggcttta atgagttgta attcctctgg
     4201 ggcaactgtt cctttcttcg ttgctcctct tgcccgccag gcgattcttt ttacctgatc
     4261 agctaacgct acgccatcac gttcctgacc ggataaaaca acttcgaacg gatatccttt
     4321 tgattgcgtt gtacaaggaa cacacagaca catacctgtt ttgttgttgt acatgaaagg
     4381 actcaggaca acagctggac gatgtccagc ttgctcgcta ccttttgtcg ggtcaaaatc
     4441 aacccaaatc agatcgccca tatcgggtac gtatcggctt accattacca gacttcctta
     4501 tctttcggct ctccccagtc gatattctcg tggaggtttt ccggcgtgat gtcgttgacc
     4561 agttcagcaa gcgtaaatac gggctcttta cgcactggct caataattaa tttgccatcc
     4621 accaggtcaa tcttcacttc atcatcaata ttcagattga gcgcctgcat taacgtagcc
     4681 gggatccgca ccgccggtga atttccccaa cgctttacgc tactgtggat catcaccctt
     4741 tcctcaaacc gctatcatat gtagatacag tatatatcaa tctacattgt agatacgagc
     4801 aaatttctgc ctaactcccg tgcaaccgac gcgcgtcgat aacatccggc acctggttga
     4861 gtttacccag cacgcggccc agcacctgca ggttgtaaat ctcaatggtc atgtcgatgg
     4921 tcgccagttg ctgtttggtg tcgctacggc tggcaacgcc aagtacgttc accttctcgt
     4981 tggcgagaat ggtcgtgata tcacgtaaca acccactacg atcattagcc accacgcgga
     5041 ccaccagcga atatccggcg gagtagctct caccccatac cgcgtcaaca atgcgttctg
     5101 gcgcatgaga gcgcagttcc gccagttgtt cgcaatcggc gcggtgtact gaaataccgc
     5161 gcccctgggt aatgaagccg acaatctcat ctccaggaat cggctggcag cagcgcgcga
     5221 tgtggtgcat caggttgcca acaccttcga ctaccacgcg accgttatct ttactgcggt
     5281 tttgcggcgt gtagcttttt tgctgaagtt gcttcagcgc ggcggcgtcc tgctcttcgg
     5341 cactcggctt attaaattgc gattgcagga agttcaccat ctgattgaga cggatatccc
     5401 cgccaccaat cgccgccagc aactcgtcga catcattaaa gttgtaacgc ggcagcagat
     5461 gtttttctgc ttctttcagg ctgatcccca gatgttccag ctcgtcgtca aggatttgcc
     5521 gcccagccag aatgtttttg tcacggtcct gtttacggaa ccaggcgtga attttcgaac
     5581 gcccacggct ggttgtgacg taaccgaggt ttgggtttaa ccagtcacgg ctggggttcg
     5641 gctgtttctg ggtgataatt tcaatctggt cgcccatctg cagctggtag gtgaacggca
     5701 caatgcgccc gccaattttt gccccgatgc agcggtgtcc gacatcactg tggatgtggt
     5761 aagcgaagtc cagcggcgtt gatcccgcag gcaaatcaac gacatcacct ttcggcgtaa
     5821 agacatacac ccggtcgtca aagacctggc tgcgtacttc gtcgagcatt tcgccggaat
     5881 cagccatctc ttcctgccac gcaatcagtt tacgcagcca ggcaatccgg tcttcatgtc
     5941 ccgaacgtgc gccgccagct gccgcgccct ctttatattt ccagtgcgca gcaacaccca
     6001 actctgcatc ttcatgcatc tgtttggtgc ggatttggat ctcaacggtt ttgccacctg
     6061 gccccagaac cacggtatga atagactgat aaccgtttgg tttcgggtta gcgacataat
     6121 cgtcaaactc atccggcagg tggcgatagt gagtgtgcac tatccccagt gcggcataac
     6181 aatcctgtaa acgctcggcg acaatacgta ccgcacgcac atcaaacagc tcatcgaagg
     6241 cgaggttctt tttctgcatt ttgcgccaga tgctgtagat gtgtttcgga cggccataca
     6301 cttcagcttt aacgccttca gctttcatct cagcgcgcag atgaccgaca aactcttcga
     6361 tatagtgttc gcggtcgaga cggcgttcat gcagcagttt tgcgatgcgt ttgtattcgg
     6421 tcgggtgcag ataacggaag cagtaatctt ccagctccca tttcagttgc ccaatcccaa
     6481 gacggttcgc caacggcgcg tagatattgg tgcactcttt tgccgccagt acgcgttcat
     6541 cttccggcgc atcttttact tcgcgcagat gagcaatacg ctccgccagt ttgatgacca
     6601 cgcagcgaaa atcatcgacc atcgccaata acatccggcg aacgttatcg acctgttcgg
     6661 aggaaacaga atcagtgtgc gtcgctttca gctggcggat cgccgccata tcacgcacgc
     6721 cgtgaataag gttaacgaca gacttaccga cgctctcacg cagcacatct tcgctgacta
     6781 cgttggcatc ggccagaggg aacagcagcg ccgcccgcag cgtgtcaatg tccatactta
     6841 atgtcgagag gatctccacc atctcaacac cacgccacaa taacagactg gcatccggat
     6901 gcccctgcgt ctgctgcaga caatacgccc aggtttcggc taagcactca cacgacttct
     6961 ggctggtaat acccagactt gcgatccatt tttccggatc aaattcacca gccttattga
     7021 tatgtgcact tcttaccgca accattgtcc tctcctttag ggaccagacc tgccgaaatc
     7081 ggcaaatcgt aactatttaa cgcgcgagaa aagtaccatc gattccagat gtcccgtgtg
     7141 tgggaacata tccagcatcg ccagtcgcgc aatggtatat cctgctttta ataacgcttc
     7201 gctatcccga gccagcgttg cagggttaca ggatacataa actatacgaa taggttccag
     7261 ttttataatt tgctgcataa cacctgcggc acctgctcgc gccgggtcca gcaacacttt
     7321 atcgaagccg tttttcgccc acggctgctt tgtgacatct tcttcaagat tttcgtgata
     7381 aaacgtcaca ttctgtaagc cattaagacg cgcattctgc tggccttttt ccaccagcgc
     7441 cggaacacct tctacaccga ccacactggc agcttgtgtc gccaatggca gtgtaaagtt
     7501 gcccataccg cagaacagat ccagtacgcg atcttcaggt tgcacatcca gccattccaa
     7561 cgcactcgct accatttttt ggttcacacc cgcattgacc tgaataaaat cgcgcgggct
     7621 aaaagttaag cgcaacccgt tagagtcata ccagggcatc tcaccagaga cggtttcgag
     7681 tatctcacta tcgggggcga gatacagatc caggccttca gaatgcgaaa agcgttccag
     7741 tttttcgcga tctgccgaac ttagcggtgc ggtatggcgc aaaatcatca gcgtgccgct
     7801 ggttgcctgt accagttcaa catgaccaag atggcgcatt gcttgtaagc tgcccaggca
     7861 tgccctgact ttgggcagca atgcttcaag ttggggcact aaaatgggac attgtttaac
     7921 gtcgacaatg tcactggagc ccgctttgcg aaaccccatc tgaagttgct gtgttttcgg
     7981 taagtagttc agacttaaac gcgcgcgacg gcgatagccc cagggaacat cggcgatcac
     8041 ttcagagact tcgtgtttca ttaatcgggc gagtgccgca cttttgcttc gctgctgtaa
     8101 atccacgctg gcgtgttgtt gctgacagcc gccgcatacg ccaaaatgag gacagcgtgg
     8161 cgtttcgcgt tccgggctat cgcttaaccg gcgtacgact ttagcgcggg catactgttt
     8221 tttatcttca gtaacagtaa cttccgcgtt ttcctgcggc aataatccgg ggataaatag
     8281 cgttttgccg ttatgtcgcg ccacgccctg accaaaagag tcgaggtcgt tgactgaaac
     8341 ggttatgatc tgacgcgtcg tcgtgcgtcg ttttgcagag tagaattgcg ccattggcga
     8401 gactttctca atttaacagt gtgaccttaa ttgtcacata acggaactcc atgaccaact
     8461 acagcctgcg cgcacgcatg atgattctga tcctggcacc gaccgtcctt attggtttat
     8521 tgctgagtat atttttcgtc gtgcatcgct ataacgactt gcagcgtcaa ctggaagatg
     8581 caggtgccag cattattgag ccgcttgcag tttctactga atatggcatg agcctgcaaa
     8641 atcgcgaatc tatcggtcag ttaataagcg tactgcatcg tcgccattcc gatattgttc
     8701 gcgcgatttc ggtttatgat gaaaataacc gactctttgt cacctccaat tttcatcttg
     8761 atccctcatc aatgcagctc ggcagcaacg tgccgtttcc tcgccagctc actgtcactc
     8821 gtgacggcga tattatgatc ctccgcacgc cgattatttc tgagagttac tcccccgacg
     8881 aatcgcccag tagcgatgcc aaaaatagtc aaaatatgtt gggatatatt gcgcttgagc
     8941 tggatcttaa atcggttcgc ttgcagcaat ataaagagat ctttatttcc agcgtgatga
     9001 tgctgttttg tatcggtatt gcgcttattt ttggctggcg cttaatgcgc gatgtaaccg
     9061 gtccgattcg caacatggtg aataccgtcg accgcatccg tcgcgggcaa ctcgacagcc
     9121 gggtggaagg atttatgctc ggcgagctgg atatgctgaa aaacggtatc aactcgatgg
     9181 caatgtcgct ggctgcttat cacgaagaga tgcagcacaa tatcgaccag gcgacgtccg
     9241 atctgcgtga aacgctggag cagatggaaa ttcagaacgt tgagttggat ctggcgaaaa
     9301 agcgcgccca ggaagcggcg cgtattaaat ccgagtttct ggcaaatatg tcacacgagc
     9361 tgcgtacacc actgaatggt gttattggct ttacccgcct gacgctgaaa acagaattaa
     9421 caccaacgca gcgcgatcac ctgaatacga ttgaacgttc ggcaaataat ttgctggcaa
     9481 ttattaatga tgttctcgac ttctcgaaac tggaagcagg taagctgatt ctggaaagta
     9541 ttccattccc actacgcagc acgctggatg aagtcgttac tctgctggca cattcttctc
     9601 acgataaagg gttggaactg acgctcaata ttaaaagcga cgtgcctgat aacgtgatcg
     9661 gcgacccact gcgattacag caaatcatca ctaacctggt ggggaatgca attaaattca
     9721 ccgagaatgg caacattgat attctggtag aaaaacgtgc gctgagtaat accaaagtgc
     9781 agattgaagt gcagattcgg gataccggca ttggtattcc tgaacgcgat caatcgcgct
     9841 tattccaggc cttccgacag gctgatgcca gtatttcccg ccgtcatggt ggcaccgggc
     9901 tggggctggt gattacacaa aaactggtta atgaaatggg cggcgatatt tcgttccata
     9961 gccagccgaa tcgcggttca actttctggt tccacattaa tctcgatctg aacccgaaca
    10021 ttattatcga agggccatcc acccagtgcc tcgcaggtaa gcgcctggcc tatgtcgaac
    10081 caaactccgc agcagcgcaa tgcacgctgg atattttaag tgaaacgccg ctggaagtgg
    10141 tttatagccc aacgttctcc gcgctgcctc ccgcgcatta cgacatgatg ttgttaggca
    10201 tcgcggtgac cttccgcgag ccgctaacaa tgcaacatga gcgattagcg aaagcggtat
    10261 cgatgaccga tttcctgatg ctggcacttc cttgccatgc acaagtcaat gctgaaaaac
    10321 tcaagcaaga tggtatcggc gcgtgtctgc tgaaaccatt aacacctaca cgcctgttgc
    10381 ctgccctgac ggaattttgt catcacaaac aaaacacgct tttgcctgta accgatgaaa
    10441 gtaagctggc aatgacagtc atggcggttg atgacaaccc cgctaacctg aaacttatcg
    10501 gcgcattgct ggaagatatg gtgcaacatg tggaactttg cgatagcggg catcaggcgg
    10561 ttgaacgggc gaaacagatg ccgttcgatt tgatcttaat ggatattcaa atgccggaca
    10621 tggatggcat tcgggcctgc gaactcatcc accagctccc ccatcagcaa caaacgccgg
    10681 ttatcgcggt aacggcgcat gcaatggccg ggcaaaaaga gaagctgctt ggcgcaggga
    10741 tgagcgatta tctggcgaaa ccgattgaag aagagcgatt gcataatttg ttgttgcgct
    10801 acaagcctgg cagcggtatt tcctctcgcg tcgtgacgcc cgaagtcaac gaaattgtgg
    10861 tgaacccgaa tgcgaccctc gactggcaac tggcactacg ccaggcagca ggaaaaaccg
    10921 atttagcgcg cgatatgctg caaatgttac tcgatttcct gcctgaagtt cgcaacaaag
    10981 ttgaggaaca gctggttgga gaaaacccgg aaggcctggt tgatttgatt cataaactgc
    11041 atggcagttg cggctatagc ggtgtgccgc gtatgaagaa tctctgccaa ctgatcgaac
    11101 aacagctacg tagcggtact aaagaagaag atttggagcc ggagctgctg gaactgttgg
    11161 acgagatgga taatgtcgcg cgcgaagcca gcaaaattct cgggtaacgg acgtcttgtc
    11221 gagtagcaat cggcttttta tgacgctggt ttcagattgg tgacaaagtg cctgtgttta
    11281 tgccggatgc ggcgttaacg ccttatccgg cctacaaaac caattaaatt caatgaatta
    11341 aaaaatgatg tagacctgat acatagcaca acaggctatt ttgcgtttag catcagtctc
    11401 aagccggctc cagatagagc cggttttggt tttctgtctt aacgcaccat gcacgggcgc
    11461 ttgttatcga acgtccagcc aggaatcaga tactgcattc ccatcgcatt gtcacgcgcg
    11521 caaagcccgt gtttctgata cagctcatgg gctttcatca cttgatccat atcgatttct
    11581 acacccagcc ccggtttttc cggcacctga accagaccgc ctttgatctc aaacggttct
    11641 ttggtcaagc gctgattgcc ttcctgccaa atccagtgcg tatcaatcgc ggtgatttta
    11701 cccggtgcag cggcggcaac atgggtaaac atcgccaggg aaatatcgaa gtggttgttt
    11761 gagtgtgaac cccaggtcag gccaaattca tggcacattt gcgccacacg taccgaacct
    11821 tgcatcgtcc agaaatgcgg atccgccagc gggatatcaa cggattgcag ggagagcgta
    11881 tggcccatct gccgccagtc ggtggcgatc atattggttg cggtcggcag gccagttgcg
    11941 cgacggaact ctgccatcac ttcacgcccg gagaaacctt gctccgcacc acacggatct
    12001 tctgcataag ccagcgaccc tttcaggtat ttaccaattt taatcgcttc gttcagcgac
    12061 caggcaccgt taggatcgag cgtaatacgc gcctgcggga agcgttgcgc cagtgccaca
    12121 atagactcgg cctcttcttc cccggccagt acaccgcctt tcagtttgaa atcgttgaag
    12181 ccatattttt catacgccgc ttccgccagg cgcaccaccg catccggcgt catcgcttct
    12241 tcatgacgca ggcgatacca gtcgcatgag tcatccggct ggctttgata cggcagcggt
    12301 gtggctttgc gatcaccgac gaagaacaga taaccgagca tttcgacttc gctacgctgt
    12361 tgaccatcgc ccagcaggga tgccacgttt acccccagat gctgccccag cagatccagc
    12421 attgccgctt ctatcccggt aactacatga atagtggtac gcaaatcaaa tgtctgcaaa
    12481 ccgcgcccac cagcatcacg atcggcaaaa gtattacgca ccagcgtcag aacgtttttg
    12541 tattcaccca gcgttttacc taccaccagc ggaatcgcat cttccagcgt tttacggatt
    12601 ttctcgccgc cgggaatttc ccctacgcca gtgtgaccag aattatcttt gataatcata
    12661 atattacgcg taaagaacgg tgcgtgtgca ccactcagat tcatcagcat actgtcatga
    12721 cccgccaccg ggatgacctg catttcagta acaacaggcg tcgtaaattg agaactcata
    12781 tttatgtcct ttttcagaat caatgacggc cgaaaacggg acgtttacgg tcaaaggtcc
    12841 agccggggat caggtactgc atcggacctg cgtcgttacg cgcaccgcca ggcagacgtt
    12901 tataggcctc atgtgccttt tgtacctgtt cccagtccag ttccacgccc agaccgggcg
    12961 catcaggaac ggcaattttt ccgtttttaa tctccagcgg atttttggtc aggcgacaat
    13021 cgccctcctg ccaaatccag tgggtatcga tagcggtagg attacccggt gccgccgcgc
    13081 ccacatgggt aaacatcgcc agagagatat cgaaatggtt attagaatgg cagccccagg
    13141 tcagccccca gtcgtcgcaa agctgcgcca cacggactgc accggaaagc gtccagaagt
    13201 gcggatcggc aagtggaata tctaccgcat tgagcatcac cgcatgaccc atttcgcgcc
    13261 agttggtggc gatcatgtta gtcgcgacgg gcaagccggt cgcccgccga aactccgcca
    13321 taacttcacg accggagaaa ccctgttctg cgccgcatgg atcttcggca taggtaagaa
    13381 catcattcag ccctttgcat agagaaatgg cttcatcaag tagccaggca ccgttgggat
    13441 caacggtaat ccgcgcatca gggaagcgtt tcttcaatgc acgaacagtg tcgatttctt
    13501 gctcgccagg taacaccccg cccttaagtt tgaaatcttt aaagccatag cgatcctgtg
    13561 aggcttccgc cagacgcaca acggcttcgc tgttcatcgc tttctgatgg cgcaactgat
    13621 accactcatg gttgcccggc gtattttcca gataaggaag atcggttttg gtccgatcac
    13681 cgatataaaa cagataaccg aggacggtaa tagtctcgcg ttgcttgcct ggccccaaca
    13741 gttcgcagac cggaacattc agcgccttac ctagcaggtc aagcaaggcg gcttccagcg
    13801 ccgccacggc attaacgtgc aattcaaaag tccaggcacc tttgccgaag gtatcaaaat
    13861 cggctgcctg attaccttta tgcacctgct gaaccacttt attcaggcgc gcaacttcct
    13921 ggcccagaac catcggaata gcatcgacca gtgtttgata aatcacctct ccgcccggcg
    13981 cttcaccaat gccggtatgc ccggcgttat cggtgagtac cacaatattg cgggtgaaat
    14041 atgcgttatg tgccccacca atattaagca acatgctatc gtgcccggcg accggaatga
    14101 ctttcatatc agtaataaca ggactggatt gtgtcgtcat cttattgccc cgcgacaggt
    14161 ttcagctcga tacgcttgat atcgcccacc agcaccaggt agctcagtac cgcgattaag
    14221 gcatgaacac caacataaat cagcgcccca ttaaaggagc cagtcgtgcc aacgatataa
    14281 ccaattgcga ttggcgtgac gatgccagaa atgttaccga acatgttgaa caggccaccg
    14341 gaaagaccgc tgatctcttt tggcgcggta tctgccatta ctgcccaacc cagcgccccg
    14401 atgcccttac cgaagaaggc cagcgccata aagccgatga tcatccactc aacgttgacg
    14461 tagttgcaga acaccatcac catcgacagc aacatgccca ttacgatcgg tgttttacgc
    14521 gcaatgttca gcgatcccgt gcggcgcatc agccagtcgg aaataatccc acccagcaca
    14581 ccgccgataa aaccgcaaac cgccggaacg gaagccacaa agcccgcttt cagaattgac
    14641 atcccacgcg cctgcaccag ataaaccgga aaccaggtaa tgaaaaagta agtcagggcg
    14701 ttgatacagt actgaccgat ataaacgccg atcatcatcc gtgacccgag cagttgtttg
    14761 atctgccccc acttcacgct gaacggcact ttaactttgg tgttttgctg atccatattg
    14821 atcagcgcgc cacccgcggc gatgtactcc agctctttct gatttacccc cggatgttga
    14881 tttggctcgt ggatgacttt caaccagata aagctgatga caatccccag accgcccata
    14941 aagaagaaga cgtgtgacca gcccacttca tgcgtcagcc agcccataat cggcgcgaag
    15001 atcaccgttg cgaagtattg agcggagtta aaaatcgaca ccgccgttcc cctttcctgc
    15061 gccggaaacc aagccgcaac aatgcgactg ttgccgggga aagatggcgc ttcagcaagc
    15121 ccgaccagga agcgcagagt aaacagggca acgataatgc cgaatccact aaagatatcg
    15181 acgaagcctt gcagcaaggt aaacatcgac cagataaaga tcgaccagaa gtagacgcgt
    15241 tttgaaccaa aacgatccag caaccaacca ccagggatct gcccgataac ataagcccat
    15301 gagaaggcag agaacacata gcccattccc acgggatcaa ggccgatatc tttggccatt
    15361 tccgaaccgg caatagaaag cgtagcgcgg tcgccgtagt tgaaggatgt gacgataaac
    15421 aacatcacca ctatccagta acgagcattc gtgcgttttt ccacactgct cgcagcctga
    15481 cttaaagaac tcgttgttgc actcctgaaa attcgcgtta gccacgctaa ctctggactg
    15541 cgacatagcc aggaaatcag aggtgacgta gggtgttttt tgccgttttt ataggtcgtt
    15601 cgccgaatac ggcgcgtgtt tatatctggc aatagcagta taaaaagcgc gccatagcgg
    15661 ctcaccgtgc aacaacacaa cattaatgcg ttcaatgagg cccgattttg gcattagccc
    15721 tggacggtgg aatccacttc acggaaatga aaacaagaac aagaaaggaa gggttaaaac
    15781 gaagaaataa agaagagtat gaaatggatc gcttgactcc aggcaaacgc cagtaaaaat
    15841 ccgcgctatg aagcagtttt tactggcatt tgcctgaaaa gattcgattc agcaccgcta
    15901 aaacgacatt taccgctcgc tgaacatatc aggacaacag cgtgccccac tgttcgaccc
    15961 acggatttga ttccgtttcc ggttccgggt tctcactggc gtcaatcaac agcatttcgc
    16021 caactcgctg agcgctctgt tcctgcaaca aggcatcgaa ctgtttgccg ccattgcaga
    16081 aatttacata actgctgtcg ccgagcgcaa tcacgccata acgcagattc ggctggaagc
    16141 ccagactatc tttgattccc tgaaagagcg gcacaatgct atcaggaagg tcgccctgcc
    16201 cggtcgtgga cgtaaccacc agaacatact tatcctgata aggcagccag tcgcttaatt
    16261 caggatcttc aaataccgtt gctttgtggc cctgtgcggt cagaattgct tctgcttctt
    16321 ccgccactaa cagcgaattt ccgtacatgg tgccgacaaa aataccaatt tccgccatac
    16381 cgttttctcc ctggattagg aacttatctc tccatcctga cccgatggcg cactgaactc
    16441 aaccctttca ttttcaggaa gcagaccgcg ccagccaaat tgtgataacg cctgcatcca
    16501 ggtgtcgtcc aggcccgcgt gaatagtcag cggctcgcca gtaaaaggat gcgtcaatga
    16561 caactgactg gcatgtagca ttaaccgctg gaggccaaaa tgctcagcac cgctgcgatt
    16621 ctggcgtaaa tcgccatgtt tgctatcgcc aataatcgga tgacgcaaat gggcaagatg
    16681 tcggcgaagc tgatgtttgc gtccggtttt cggctccagt tccaccaggc cgtagcgcgt
    16741 ggtcgggtaa cgtccggtcg ctaccggcat ttctacggtc gccagaccgc gataatgcgt
    16801 cactgctggc tgcgggcctt tatcttcgcg ggcaaattta tcagcgattt tgtccagttc
    16861 ttccaccagt ggataatcca gcaccgcttc ttccatcaac cagccgcgca caatcgcatg
    16921 gtaacgtttc tggatttggt gctgttcaaa ctgttgtgcc agcagccgtc cggcctcgct
    16981 ggataatccc atcaacaaca caccagaagt gggtcggtcc agacgatgag cagtaaaaac
    17041 atgctgtcct atctggttac gcacggtttg catgaccact actttctcgt cgcgatccag
    17101 ccagctacgg tgaaccagcc agccggaggg tttatttacc gaaaccagcc attcatcctg
    17161 atagagtatt tccagcatta gctcgcatca tccgcaaaaa gagcatccag tttttccaac
    17221 tcagccagaa taagcgcgtg ttgcggatgg tccgtcgcca gcgccatttc ataatagggt
    17281 gcaacagcaa aagcgcccgg taacggctgg ttgttattta acaaatcgtg cattcgcggg
    17341 atcagcaccc actgcaacca ctccagtggt tccatggtgt ccataaagaa cggttgggta
    17401 ctattaaatt gatgcggctg gggttcatcg tttcgccagt gctgatgttc acgcagtaac
    17461 gcttcaagcg cctgcaactg gagacgaacg cggtcatgag tggtcataaa gcaacctcaa
    17521 taagaaaaac tgccgcgaag gatagcagga ataaaaaaag ggagcactgt attcacagcg
    17581 ctcccggttc gtttcgcagc attccagcta cttttgttgc tccctgctca tccttgacaa
    17641 cttttcctct ggccttgcgg ccaatcgttc atcctgaact attgcttcct gctcacacca
    17701 ccccgatgtg atacttcatc ctgaagtgtc cttggccttc ctgaccagcc gaatcatcct
    17761 gaccggttct cattctccat cctggaggtg tcctttaacg cgtcctgcgt catcctcttc
    17821 gcttcatcca gaagcctttc cctgaaacac catcctggtg tgtcctgcag aagtgtcatc
    17881 atcctgatgt tcacttcgtt gtctgactcc ctgtcgacga agatagaatc gtctttttcg
    17941 cgaagtctta caaggcgctt acagacaatg ccttaaggaa aatttcatat gaaagttaag
    18001 aattaacaat caacattttg attttaaatg aaaataacga ttcttatctt tttaagtatt
    18061 cgcttatttc ctggcgatct cctacagagt ctgtaagaga tctctcacaa ccagatgggg
    18121 tatttggatt acagaagagg cttaagttga ttaaggaatt ccgcaagatt tgaggctaaa
    18181 tgcgtccgtt tacgtgttcc cagcgtctct ttgcacactt caccggagag attacacacc
    18241 gagatgacct ctaactcttc ttccagcgtc gcgataaata gcgtgggcgg cagttttagc
    18301 cttttctgag tcaccagatg accaatcaga ttttcctgca cccgacggaa gtcgtcttca
    18361 ctccaggttt gcagcaatgt cagtttgata tcgccaaact gcgcgtgcat atccccggca
    18421 aactgagtcg tataaaaggt atgaattgtg ggttgtatca caatatcaaa agcgcgttca
    18481 accgcgttta cattttgttc cccggtaaac ggctggggtt gccagtatac ggcatcttcg
    18541 gtagttgaaa taatgcacgg tgaaggaaca ccgtacagtt cctcacttaa cggccagctt
    18601 ttatgctctt catgccacgc atcgcagtag cgtgcagtaa aatctttcag ggcttgtgcg
    18661 gtcaaatcgt ccactaattt ctctcttcac ttaaaccaga tacacttgtc gtttagttta
    18721 tctggtttat gacggtgaaa catgtcttct tatgcaaacc atcaggcact tgcgggcctg
    18781 actcttggaa aatcaaccga ttaccgggat acctatgacg ccagcctact gcaaggcgtt
    18841 ccacgcagcc tgaatcgcga cccgctgggt ctgaaagcgg ataacctgcc ttttcacggt
    18901 acggatatct ggacgctgta tgaactttcc tggctgaatg cgaaaggttt gccgcaggtc
    18961 gctgtcggtc atgttgaact tgattacacc agcgtaaatc tgattgagtc gaagagtttt
    19021 aagctctatc tcaacagttt taaccagacg cgttttaata actgggatga ggtgcgccag
    19081 acgctggagc gcgacttaag cacttgcgct cagggtaaga ttagcgtggc gttatatcgt
    19141 cttgatgaac tggaaggcca gccgataggt cattttaatg gcacttgcat tgatgaccag
    19201 gatatcacta tcgataacta tgaattcact actgactatc tggagaatgc cacctgtggt
    19261 gaaaaagtag tggaagagac gcttgtcagc cacctgctga aatcaaactg cctgatcacc
    19321 catcaaccag attggggttc gatccaaatt cagtatcgtg gacgccaaat tgacagagaa
    19381 aaactgctgc gttacctggt ctcattccgt catcacaacg agttccacga acagtgcgtg
    19441 gaacgcatct ttaatgacct gttacgcttc tgccagccag aaaaattgag cgtttacgca
    19501 cgttataccc gtcgtggcgg tctggacatt aacccgtggc gcagtaatag cgattttgtc
    19561 ccatcgacca caagactggt tcggcaataa attttttctc aattttgcgt gctggattca
    19621 cgcagaaggt tgtgaaaggt catcaggcag ggctattgta atcaaaggga atgacgatat
    19681 tcgtcccata aggagttttt cttgattaca catattagcc cgcttggctc catggatatg
    19741 ttgtcgcagc tggaagtgga tatgcttaaa cgcaccgcca gcagcgacct ctatcaactg
    19801 tttcgcaact gttcacttgc cgtactgaac tccggtagtt tgaccgataa cagcaaagaa
    19861 ttgctgtctc gttttgaaaa tttcgatatt aacgtcttgc gccgtgaacg cggcgtaaag
    19921 ctggaactga ttaatccccc ggaagaggct tttgtcgatg ggcgaattat tcgcgctttg
    19981 caggccaact tgttcgcggt cctgcgtgac attctcttcg tttacgggca aatccataac
    20041 accgttcgtt ttcccaacct gaatctcgac aactccgtcc acatcactaa cctggtcttt
    20101 tccatcttgc gtaacgctcg cgcgctgcat gtgggtgaag cgccaaatat ggtggtctgc
    20161 tggggcggtc actcaattaa cgaaaacgag tatttgtatg cccgtcgcgt cggaaaccag
    20221 ctgggcctgc gtgagctgaa tatctgcacc ggctgtggtc cgggagcgat ggaagcgccg
    20281 atgaaaggtg ctgcggtcgg acacgcgcag cagcgttaca aagacagtcg ttttattggt
    20341 atgacagagc cgtcgattat cgccgctgaa ccgcctaacc cgctggtcaa cgaattgatc
    20401 atcatgccag atatcgaaaa acgtctggaa gcgtttgtcc gtatcgctca cggtatcatt
    20461 atcttccctg gcggtgtggg tacggcagaa gagttgctgt atttgctggg aattttaatg
    20521 aacccggcca acaaagatca ggttttacca ttgatcctca ccggcccgaa agagagcgcc
    20581 gactacttcc gcgtactgga cgagtttgtc gtgcatacgc tgggtgaaaa cgcgcgccgc
    20641 cattaccgca tcatcattga tgacgccgct gaagtcgctc gtcagatgaa aaaatcgatg
    20701 ccgctggtga aagaaaatcg ccgcgacaca ggcgatgcct acagctttaa ctggtcaatg
    20761 cgcattgcgc cagatttgca aatgccgttt gagccgtctc acgagaatat ggctaatctg
    20821 aagctttacc cggatcaacc cgttgaagtg ctagctgccg acctgcgccg tgcgttctcc
    20881 ggtattgtgg cgggtaacgt aaaagaagtc ggtattcgcg ccattgaaga gtttggtcct
    20941 tacaaaatca acggcgataa agagattatg cgtcgtatgg acgacctgct acagggtttt
    21001 gttgcccagc atcgtatgaa gttgccaggc tcagcctaca tcccttgcta cgaaatctgc
    21061 acgtaatctc ccctcccccg gtgacgtttg ttgccgggtt ttctcgtttt tggtcactta
    21121 ctcatcaact catttcattt gttatatgaa tgtttcttac caccctcacg cgacaaatat
    21181 catcacagtt aatatgtcat acaatttatg ttgcaacgca aacgttttcc tattttcata
    21241 aaccgtattt tatcgctatg aaaaagaaat tatcgccatg attaactaaa agtattgatt
    21301 ttttcagttc aacctacata tattgcgcgc cctggaagaa gtcagatgtc gtttaatggg
    21361 caaatattgc ccttaaattc tcttttactt ttgatttaca gagtaaagcg ttgggataat
    21421 ctatcttcca agtagattat tgtatttgag atcaagatca ctgatagata cataacttgt
    21481 gtgtatcttt ccgccctcaa attattacgg cggtaaatga ttaagccatc gccgatagac
    21541 agatttcatt tttacggtca ggcaccttcc cgggctgaac tggctaaaag ctgaattatt
    21601 tgcattcctc caggagaaat agatggaaac gactcaaacc agcacgattg cgtcgaaaga
    21661 ctctcgtagt gcctggcgca agacagacac catgtggatg ctgggccttt acggcacggc
    21721 aatcggcgcg ggcgtgctgt tcctgccaat caacgccggt gttggcggta tgatcccgct
    21781 gatcatcatg gctatccttg cgttcccgat gacgtttttt gctcaccgcg gcctgactcg
    21841 cttcgtactg tctggtaaaa acccgggcga agacatcacc gaggttgtag aagaacactt
    21901 tggtattggc gcaggtaaac tgattaccct gctctacttc ttcgctatct acccgatcct
    21961 gctggtttat agcgtggcaa tcaccaatac agttgaaagc ttcatgtctc accagctggg
    22021 tatgacgcca ccgccgcgtg cgattctgtc gctgatcctg atcgtgggta tgatgaccat
    22081 cgttcgcttc ggtgagcaga tgatcgttaa agcgatgagt attctggtgt tcccgtttgt
    22141 tggcgtattg atgctgctgg ctctgtacct gatcccgcag tggaacggcg cagcactgga
    22201 aacgctgtct ctggacactg catctgcaac cggaaacggt ctgtggatga ccctgtggct
    22261 ggcaattccg gtaatggtgt tctcgttcaa ccactctccg atcatctctt ctttcgccgt
    22321 tgcgaagcgt gaagagtacg gcgatatggc agaacagaaa tgctcgaaga tcctggcatt
    22381 cgcacacatc atgatggtgc tgaccgtaat gttcttcgtc ttcagctgtg tactgagcct
    22441 gactccggca gacctggctg cggctaaaga gcagaacatc tcgattctgt cttacctggc
    22501 taaccacttt aacgcaccgg ttatcgcgtg gatggctccg attatcgcga ttatcgctat
    22561 caccaaatcc ttcctcggcc actacctggg cgcacgtgaa ggcttcaacg gtatggtgat
    22621 taaatctctg cgtggtaaag gtaagtctat cgaaatcaac aagctgaacc gtatcactgc
    22681 gctgttcatg ctggtaacga cctggattgt tgccaccctg aacccgagca tcctgggtat
    22741 gattgaaacc ctgggcggtc caatcatcgc gatgatcctg ttcctgatgc cgatgtacgc
    22801 aattcagaaa gtaccggcaa tgcgtaagta cagcggtcac atcagcaacg tattcgttgt
    22861 cgtgatgggt ctgattgcaa tctccgcaat cttctactct ctgttcagct aagtcctttc
    22921 gcgccgcttt cgggcggcgc ttcctccgtt ttaacgcgat gtatttccta tgattagcgt
    22981 attcgatatt ttcaaaatcg gcattggccc ttccagttct cataccgttg gaccaatgaa
    23041 agcgggtaaa caatttaccg acgatctgat tgcccgtaac ctgcttaaag acgtgacccg
    23101 cgtggtggtt gacgtgtacg gctcgctctc tctgaccggt aaaggccacc acactgatat
    23161 cgccattatt atgggcctgg cgggtaacct gccggatacc gtggatatcg attccatccc
    23221 tggttttatt caggatgtga atactcatgg tcgcctgatg ctggcaaacg gtcagcatga
    23281 agtggagttc ccggttgatc agtgcatgaa cttccacgcc gacaaccttt ctctgcatga
    23341 aaacggtatg cgcattaccg cgctggcggg cgataaagtc gtttacagcc agacttacta
    23401 ctctattggc ggtggcttta tcgttgatga agagcatttt ggccagcagg atagcgcacc
    23461 ggttgaagtt ccttatccgt acagttcagc agccgatctg caaaaacatt gtcaggaaac
    23521 cgggctgtca ctctctggcc tgatgatgaa aaacgagcta gcgctgcaca gcaaagaaga
    23581 gctggaacag cacctggcga acgtatggga agtcatgcgt ggcggtattg agcgcggtat
    23641 ttccaccgaa ggcgtgttgc ctggcaaact gcgcgttcca cgccgtgctg cggcactacg
    23701 ccggatgctg gtcagccagg ataaaaccac cactgacccg atggcggttg ttgactggat
    23761 caacatgttt gcactggcag tgaacgaaga gaacgctgct ggcggacgcg tggtgactgc
    23821 gccgactaac ggtgcgtgcg ggattatccc ggcagtgctg gcgtactacg acaagtttat
    23881 ccgcgaagtg aacgctaact cactggctcg ttacctgctg gtagccagtg ccattggttc
    23941 tctttataag atgaacgcgt caatttctgg tgctgaagtc ggctgccagg gtgaagttgg
    24001 tgtggcgtgc tcaatggcgg cggctggtct ggcagaactg ttaggtgcaa gcccggcgca
    24061 ggtgtgcatc gcggcggaaa tcgccatgga gcacaacctc ggtctgacgt gtgacccggt
    24121 cgccggacag gtccaggtgc catgcatcga gcgtaacgcc attgcggcag taaaagcggt
    24181 gaacgccgca cgtatggcgc tacgccgtac cagcgagccg cgcgtctgcc tcgataaagt
    24241 tatcgaaacc atgtacgaaa caggtaaaga tatgaacgcc aagtaccgcg aaacctctcg
    24301 cggcggcctg gcaatgaaga tcgttgcctg cgattaatcg ctctccagag gcctcgtttt
    24361 gcgaggcctc ttcccgattt ctcatccagc cgtagcctgt tccggcatcg aatgttaccc
    24421 ttatcgcctg atctttaagg gggttatcgt ggctgttcat ttgcttattg tcgatgcact
    24481 gaatcttatt cgtcgcattc atgccgttca gggatcgccc tgtgtcgaaa cctgccagca
    24541 tgcgctcgat cagctcatta tgcacagcca gccaacccac gcggtcgccg tttttgatga
    24601 tgaaaaccgc agtagcggct ggcgtcatca gcgtttacca gattacaaag cgggtcgacc
    24661 gccaatgccg gaagagttgc acgacgagat gcctgcatta cgcgccgcct ttgagcaacg
    24721 cggcgtcccg tgctggtcaa ccagcggcaa cgaagccgat gacttagccg ccacgctggc
    24781 ggtcaaagtg acacaggccg ggcatcaggc aacgattgtt tcgacagata aaggctactg
    24841 tcagttactt tcaccgacat tacgtattcg tgattacttc cagaaacgtt ggctggatgc
    24901 gccatttatc gataaagaat ttggcgttca accgcagcag ttgcccgatt actggggact
    24961 tgcggggatc agcagttcaa aggtaccggg tgttgcggga atcggaccaa aaagcgccac
    25021 gcagctgctg gtcgagtttc agagtctgga agggatatat gagaatctgg atgcggttgc
    25081 cgaaaagtgg cgcaaaaaat tagaaaccca taaagagatg gcgtttctgt gccgcgatat
    25141 tgcccgctta caaaccgatt tgcatatcga cggcaattta cagcaattgc ggttggtacg
    25201 gtaacggcga gccggatgca aacgattatc aacacattga atttaatgca cttatatacc
    25261 ggataagacg cggctagcgt cgtatccggc attatcacat cagcgcattt accaggcggt
    25321 atggtaaagc tctacaatat cctcaagcgt tgcttcacgc gggttgccac cggtacaaac
    25381 atcatccagt gccgcctgcg ccagtgccgg aatgtcttcc ttgcgtacac caacatcacg
    25441 caaatgtggc ggaataccga catcacggtt gagagcaaac accgcttcaa cagcggcatt
    25501 acgcgcctct tccagccact ttcacgccca taacgcgcgc gatatcgcgg tacttctcac
    25561 cggtaaagtc agcgttatag cgcatgacat gcggtaacag gatggcgttc gcaacaccgt
    25621 gtggagtgtt gtaaaacgcg cccagtggat gcgccatacc atgcaccaac cctaacccaa
    25681 cattcgagaa gcccataccc gcaacatact gcccgagcgc catttcttct ccggcatcct
    25741 tatcaccagc aaccgatcct cgcagcgccc cagcaatgat ttcaatcgct ttaatgtgca
    25801 gtgcatcggt tagcgcccac gcgccacggg taatataccc ctcaatagca tgagtgagcg
    25861 catcgacacc cgtcgcagct ttcagcgctg gaggcatacc atccatcatg tcagcgtcaa
    25921 taaacgccac ctgcgggata tcatgcggat caacgcaaac aaacttgcgc cgtttctctt
    25981 cgtcagtgat cacgtagtta atggtcactt ctgccgcagt acctgctgtg gtaggaattg
    26041 ccagaatcgg tacactgggt ttattggtcg gggaaagccc ttccaggcta cgcacatcgg
    26101 caaactccgg gttgttgctg ataatgccaa tcgctttaca agtatcctgt ggagaaccac
    26161 caccaatagc gatcaggtaa tccgcgccgc tattctggaa tacaccgagc ccttctttga
    26221 cgacagtaat tgttgggttg ggcactacgc cgtcgtaaat cgcccatgcc agccctgcag
    26281 catccatctt atcggtcact ttcgccacca cgccgcattg caccagcgtt ttatcggtga
    26341 cgatcagcgc cttctgataa ccacggcgtt tcacctcatc ggttaaagcc ccaacagcac
    26401 cccgaccaaa ccatgccgtt tcgttcagaa tcattctgtt agccatcatc cttctccttg
    26461 ttgctttacg aaattactct tcaatccgta acccataggt tttgaatttc tccagcacta
    26521 cggcaatctc ttcatcgctc agcactggca ccgggtccgt aatcgccagg gtcgtcaggt
    26581 aaagttgcgc cagcacttca acttcatgcg ccagccataa cgctttttcc agattcacct
    26641 cacaagcgat aagcccatga tgttgtaaca aagttgcctt acgatttttg agagccagcg
    26701 caacatgttc agaaagttcg cgtgttccaa aggtcgcata aggcgcgcaa ggaatagaat
    26761 taccacctgc cgccgcaatc atgtagtgaa tagcggggat cggtcggtta agaatggaaa
    26821 ctgctgtgca atgaacggca tgattgtgaa caaccgcgtt ggcatccggt ctgctttgat
    26881 aggccgccat atggaaacgc cattcgcttg aggggagctt tccttcctca tgtttaccgt
    26941 taccatcaat aaaggcaata tgcgactccg tcagtttttc atatggaatg cctgtaggcg
    27001 taatcagcat cccatcctga taacgtacac tgacgttccc cgctgtcccc tggttcagtc
    27061 ccaggcgggt catttccagg caagtgtcaa taatctgacg agcaagttta tttcgttcca
    27121 ttagctacct ctctctgatt caaaacaggg caataatgtt gttcctttca cactattgaa
    27181 ttagccgttt aattacccac cat
//
LOCUS       DAJVSY010000042        26815 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.042, whole genome shotgun sequence.
ACCESSION   DAJVSY010000042 DAJVSY010000000
VERSION     DAJVSY010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 26815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26815
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.042"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..326)
                     /gene="rpnB"
                     /locus_tag="OQQ19_001595"
     CDS             complement(<1..326)
                     /gene="rpnB"
                     /locus_tag="OQQ19_001595"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnB"
                     /protein_id="HCS1803259.1"
                     /translation="MTISTTSTPHDAVFKSFLRHPDTARDFIDIHLPAPLRKLCDLTT
                     LKLEPNSFIDEDLRQYYSDLLWSVKTQEGVGYIYVVIEHQSKPEELMAFRMMRYSIAA
                     MQNHLDA"
     gene            complement(523..1296)
                     /gene="hisP"
                     /locus_tag="OQQ19_001596"
     CDS             complement(523..1296)
                     /gene="hisP"
                     /locus_tag="OQQ19_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter ATP-binding protein
                     HisP"
                     /protein_id="HCS1803260.1"
                     /translation="MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGK
                     STFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN
                     LWSHMTVLENVMEAPIQVLGLSKQEAHERAVKYLAKVGIDERAQGKYPVHLSGGQQQR
                     VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV
                     STHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQFLKGSLK"
     gene            complement(1304..2020)
                     /locus_tag="OQQ19_001597"
     CDS             complement(1304..2020)
                     /locus_tag="OQQ19_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1803261.1"
                     /translation="MIEILHEYWKPLLWTDGYRFTGVAITLWLLILSVVIGGVLALFL
                     AIGRVSSNKYIQFPIWLFTYIFRGTPLYVQLLVFYSGIYTLEIVKGTEFLNAFFRSGL
                     NCTVLALTLNTCAYTTEIFAGAIRSVLHGEIEAARAYGFSTFKMYRCIILPSALRIAL
                     PAYSNEVILMLHSTALAFTATVPDLLKIARDINAATYQPFTAFGIAAVLYLIISYVLI
                     SLFRRAEKRWLQHVKPSSTH"
     gene            complement(2017..2703)
                     /gene="hisQ"
                     /locus_tag="OQQ19_001598"
     CDS             complement(2017..2703)
                     /gene="hisQ"
                     /locus_tag="OQQ19_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012124147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter permease HisQ"
                     /protein_id="HCS1803262.1"
                     /translation="MLYGFSGVILQGALVTLELAISSVVLAVIIGLIGAGGKLSQNRL
                     SGLIFEGYTTLIRGVPDLVLMLLIFFGLQIALNTVTEAMGVGQIDIDPMVAGIITLGF
                     IYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQV
                     ILKSTALVSLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLFLERR
                     YSVGVKRADL"
     gene            complement(2793..3575)
                     /gene="hisJ"
                     /locus_tag="OQQ19_001599"
     CDS             complement(2793..3575)
                     /gene="hisJ"
                     /locus_tag="OQQ19_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter substrate-binding
                     protein HisJ"
                     /protein_id="HCS1803263.1"
                     /translation="MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNS
                     QGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQE
                     IAFTDKLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIV
                     SYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTG
                     MGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGG"
     gene            complement(3796..4578)
                     /gene="argT"
                     /locus_tag="OQQ19_001600"
     CDS             complement(3796..4578)
                     /gene="argT"
                     /locus_tag="OQQ19_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine/arginine/ornithine ABC transporter
                     substrate-binding protein ArgT"
                     /protein_id="HCS1803264.1"
                     /translation="MKKSILALSLLVGLSAAASSYAALPETVRIGTDTTYAPFSSKDA
                     KGDFVGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQE
                     IAFSDKLYAADSRLIAAKGSPIQPTLDSLKGKHVGVLQGSTQEAYANETWRSKGVDVV
                     AYANQDLVYSDLAAGRLDAALQDEVAASEGFLKQPAGKDFAFAGSSVKDKKYFGDGTG
                     VGLRKDDAELTAAFNKALGELRQDGTYDKMAKKYFDFNVYGD"
     gene            complement(4844..5413)
                     /gene="ubiX"
                     /locus_tag="OQQ19_001601"
     CDS             complement(4844..5413)
                     /gene="ubiX"
                     /locus_tag="OQQ19_001601"
                     /EC_number="2.5.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin prenyltransferase UbiX"
                     /protein_id="HCS1803265.1"
                     /translation="MKRLIVGISGASGAIYGVRLLQVLRDVTDIETHLVMSQAARQTL
                     SLETDFSLREVQALADVTHDARDISASISSGSFQTLGMVILPCSIKTLSGIVHSYTDG
                     LLTRAADVVLKERRPLVLCVRETPLHLGHLRLMTQAAEIGAVIMPPVPAFYHRPQSLD
                     DVINQTVNRVLDQFAITLPEDLFARWKGA"
     gene            complement(5508..7025)
                     /gene="purF"
                     /locus_tag="OQQ19_001602"
     CDS             complement(5508..7025)
                     /gene="purF"
                     /locus_tag="OQQ19_001602"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006820991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HCS1803266.1"
                     /translation="MCGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFR
                     LRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHN
                     GNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAAT
                     NRLIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLG
                     FDFLRDVAPGEAIYITEEGQLFTRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSAR
                     VNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRT
                     FIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVY
                     LASAAPEIRFPNVYGIDMPSATELIAHGREVDEIRQIIGADGLIFQDLNDLIDAVRAE
                     NPDIQQFECSVFNGVYVTKDVDQDYLDFLDTLRNDDAKAVQRQNEVENLEMHNEG"
     gene            complement(7062..7550)
                     /gene="cvpA"
                     /locus_tag="OQQ19_001603"
     CDS             complement(7062..7550)
                     /gene="cvpA"
                     /locus_tag="OQQ19_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin V production protein"
                     /protein_id="HCS1803267.1"
                     /translation="MVWIDYAIIAVIAFSSLVSLIRGFVREALSLVTWGCAFFVASHY
                     YTYLSVWFTGFEDELVRNGIAIAVLFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGV
                     CFGALRGVLIVAAILFFLDSFTGVSKSEDWSKSQLIPQFSFIIRWFFDYLQSSSSFLP
                     RA"
     gene            complement(7809..8471)
                     /gene="dedD"
                     /locus_tag="OQQ19_001604"
     CDS             complement(7809..8471)
                     /gene="dedD"
                     /locus_tag="OQQ19_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416817.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein DedD"
                     /protein_id="HCS1803268.1"
                     /translation="MASKFQNRLVGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLV
                     PKAGDRDEPDMMPAATQALPTQPPEGAAEEVRAGDAAAPSLDPATIAANNTEFEPEPA
                     PVAPPKPKPVEPPKPKVEAPPAPKPEPKPVVEEKAAPTGKAYVVQLGALKNADKVNEI
                     VGKLRGAGYRVYTSPSTPVQGKITRILVGPDASKDKLKGSLGELKQLSGLSGVVMGYT
                     PN"
     gene            complement(8461..9729)
                     /gene="folC"
                     /locus_tag="OQQ19_001605"
     CDS             complement(8461..9729)
                     /gene="folC"
                     /locus_tag="OQQ19_001605"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HCS1803269.1"
                     /translation="MIIKRTPQAASPLASWLSYLENLHSKTIDLGLERVSQVAARLGV
                     LKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPE
                     SAHTASFAEIESARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVD
                     ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSAKPAIVGEPEMPSTIADVAQEKGA
                     LLQRRGVEWNYSVTDHDWAFSDAHGTLENLPLPLVPQPNAATALAALRASGLEVSENA
                     IRDGIASAILPGRFQIVSESPRVIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLH
                     DKDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADA
                     KAEDTVLVCGSFHTVAHVMEVIDARRSGGK"
     gene            complement(9799..10713)
                     /gene="accD"
                     /locus_tag="OQQ19_001606"
     CDS             complement(9799..10713)
                     /gene="accD"
                     /locus_tag="OQQ19_001606"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HCS1803270.1"
                     /translation="MSWIERIKSNITPTRKASIPEGVWTKCDSCGQVLYRAELERNLE
                     VCPKCDHHMRMTARNRLHSLLDEGSLVEMGSELEPKDVLKFRDSKKYKDRLASAQKET
                     GEKDALVVMKGTLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFS
                     ASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNI
                     AEPKALIGFAGPRVIEQTVREKLPLGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAK
                     LMNLPAPNPEAPREGVVVPPVPDQEPEA"
     gene            complement(10869..11528)
                     /locus_tag="OQQ19_001607"
     CDS             complement(10869..11528)
                     /locus_tag="OQQ19_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1803271.1"
                     /translation="MDLIYFLIDFILHIDVHLAELVAEYGVWVYAILFLILFCETGLV
                     VTPFLPGDSLLFVAGALASLETNDLNVHMMVVLMLIAAIVGDAVNYTIGRLFGDKLFS
                     NPDSKIFRCSYLDKTHQFYERHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYN
                     VIGALLWVLIFTYAGYFFGMLPFIQSNLKLMIVGIIFVSILPGVFEFIRHKRAAARAA
                     K"
     gene            complement(11611..12423)
                     /gene="truA"
                     /locus_tag="OQQ19_001608"
     CDS             complement(11611..12423)
                     /gene="truA"
                     /locus_tag="OQQ19_001608"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HCS1803272.1"
                     /translation="MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALS
                     QVANEPITVFCAGRTDAGVHGTGQVVHFETTAPRKDAAWTLGVNANLPDDIAVRWVKA
                     VPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGEND
                     FTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHN
                     QPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPMGPLFLAD"
     gene            complement(12423..13436)
                     /locus_tag="OQQ19_001609"
     CDS             complement(12423..13436)
                     /locus_tag="OQQ19_001609"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HCS1803273.1"
                     /translation="MSEGWNIAVLGATGAVGEALLETLAERQFPVGEIYALARNESAG
                     EQLRFGGKTITVQDAAEFDWTQAQLAFFVAGKEATAAWVEEATNSGCLVIDSSGLFAL
                     EPDVPLVVPEVNPFVLTDYRNRNVIAVPDSLTSQLLAALKPLIDQGGLSRISVTSLIS
                     ASAQGKKAVDALAGQSAKLLNGIPIDEEDFFGRQLAFNMLPLLPDSEGSVREERRIVD
                     EVRKILQDEGLMISASVVQAPVFYGHAQMVNFEALRPLAAEEARDAFAQGEDIVLSEE
                     NEFPTQVGDASGTPHLSVGCVRNDYGMPEQVQFWSVADNVRFGGALMAVKIAEKLVQE
                     YLY"
     gene            complement(13502..14638)
                     /gene="pdxB"
                     /locus_tag="OQQ19_001610"
     CDS             complement(13502..14638)
                     /gene="pdxB"
                     /locus_tag="OQQ19_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-phosphoerythronate dehydrogenase PdxB"
                     /protein_id="HCS1803274.1"
                     /translation="MKILVDENMPYARDLFSRLGEVTAVPGRPIAVAQLADADALMVR
                     SVTKVNESLLAGKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSS
                     LLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRS
                     LDELVQHADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALL
                     TCLNEGQKLSVVLDVWEGEPELNVELLTKVDIGTPHIAGYTLEGKARGTTQVFEAYSK
                     FIGHEQHVALDTLLPAPEFGRITLHGPLDQPTLKRLVHLVYDVRRDDAPLRKVAGIPG
                     EFDKLRKNYLERREWSSLYVICDDASAASLLCKLGFNAVHHPAR"
     gene            14737..15732
                     /gene="flk"
                     /locus_tag="OQQ19_001611"
     CDS             14737..15732
                     /gene="flk"
                     /locus_tag="OQQ19_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulator Flk"
                     /protein_id="HCS1803275.1"
                     /translation="MIQPISGPPPGQPPGQGDNLPSGAGNQPLSSQQRTSLESLMTKV
                     TSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQ
                     LGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREAT
                     DRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWL
                     QARQTLSQQNTPTLESLQMALKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDIL
                     NQLYQRRVKGIDPRDMQPLLNPFPPMMDTLQNMATRPALWILLVAIILMLVWLVR"
     gene            complement(15729..16907)
                     /locus_tag="OQQ19_001612"
     CDS             complement(15729..16907)
                     /locus_tag="OQQ19_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1803276.1"
                     /translation="MTAVSQTETRSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHH
                     DLGYGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGGALLLAA
                     ILPVSAPLKFALLVVGRLILGFGESQLLTGALTWGLGIVGAKHSGKVMSWNGMAIYGA
                     LAVGAPLGLLIHSHYGFAALAITTMVLPLLAWACNGTVRKVPALAGERPSLWSVVGLI
                     WKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVVMRVMFGWMPDRF
                     GGVKVAIVSLLVETVGLLLLWQAPGAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQ
                     VRGTALGGYAAFQDIALGVSGPLAGMLATTFGYSSVFLAGAISAVLGIIVTILSFRRG
                     "
     gene            complement(17236..18456)
                     /gene="fabB"
                     /locus_tag="OQQ19_001613"
     CDS             complement(17236..18456)
                     /gene="fabB"
                     /locus_tag="OQQ19_001613"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HCS1803277.1"
                     /translation="MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGM
                     RSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLI
                     AGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSIS
                     SACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKA
                     SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG
                     AVRCMKMAMHGVDTPIDYLNSHGTSTPVGDVKELAAIREVFGDKSPAISATKAMTGHS
                     LGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGF
                     GGTNATLVMRKLKD"
     gene            18615..20621
                     /gene="mnmC"
                     /locus_tag="OQQ19_001614"
     CDS             18615..20621
                     /gene="mnmC"
                     /locus_tag="OQQ19_001614"
                     /EC_number="1.5.-.-"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HCS1803278.1"
                     /translation="MKHYSIQPANLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLG
                     GNQLEVRFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK
                     FPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINEL
                     TSQQDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAGFVRR
                     GLQDAGFTMQKRKGFGRKREMLCGVMEQTLPLPCSAPWFNRTGSSKREAAIIGGGIAC
                     ALLSLALLRRGWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFAR
                     RFYDQLPVKFDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGVA
                     TNCSGITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNLSRKDDCWLLNFAGDQ
                     QATHSVVVLANGHQISRFSQTSTLPVYSVAGQVSHIPTTPELAELKQVLCYDGYLTPQ
                     NPANQHHCIGASYHRGSEDTAYSEDDQQQNRQRLIDCFPQAQWAKEVDVSDKEARCGV
                     RCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPVFDDLFMFAALGSRGLCSAP
                     LCAEILAAQMSDEPIPMDASTLAALNPNRLWVRKLLKGKAVKAG"
     gene            complement(20742..21020)
                     /locus_tag="OQQ19_001615"
     CDS             complement(20742..21020)
                     /locus_tag="OQQ19_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcL family protein"
                     /protein_id="HCS1803279.1"
                     /translation="MIAEFESRILALIDGMIDHASDDELFASGYLRGHLTLAIAELES
                     GDDHSAQAVHTTVSQSLEKAIGAGELSPRDQALVTDMWENLFQQASQQ"
     gene            complement(21054..21602)
                     /gene="epmC"
                     /locus_tag="OQQ19_001616"
     CDS             complement(21054..21602)
                     /gene="epmC"
                     /locus_tag="OQQ19_001616"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P hydroxylase"
                     /protein_id="HCS1803280.1"
                     /translation="MNSTHHYEQLIEIFNSCFADEFNTRLIKGDDEPIYLPADAEVPY
                     NRIVFAHGFYASAIHEISHWCIAGKARRELVDFGYWYCPDGRDAQTQSQFEDVEVKPQ
                     ALDWLFCVAAGYPFNVSCDNLEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKA
                     LQNYYHTPELTAEQFPWPEALN"
     gene            complement(21602..22411)
                     /locus_tag="OQQ19_001617"
     CDS             complement(21602..22411)
                     /locus_tag="OQQ19_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HCS1803281.1"
                     /translation="METFNSLFMVSPLLLGVLFFVAMLAGFIDSIAGGGGLLTIPALM
                     AAGMSPANALATNKLQACGGSISATIYFIRRKVVSLSDQKLNIAMTFAGSMSGALLVQ
                     YVQADVLRQILPILVICIGLYFLLMPKLGEEDRQRRMYGLPFALIAGGCVGFYDGFFG
                     PAAGSFYALAFVTLCGFNLAKATAHAKLLNATSNIGGLLLFILGGKVIWATGFVMLVG
                     QFLGARMGSRLVLSKGQKLIRPMIVIVSAVMSAKLLYDSHGQEILHWLGMN"
     gene            complement(22411..23235)
                     /gene="mepA"
                     /locus_tag="OQQ19_001618"
     CDS             complement(22411..23235)
                     /gene="mepA"
                     /locus_tag="OQQ19_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-insensitive murein endopeptidase"
                     /protein_id="HCS1803282.1"
                     /translation="MNKTAIALLALLASSASLAATPWQKITQPVPGSAQSIGSFSNGC
                     IVGADTLPIQSEHYQVMRTDQRRYFGHPDLVMFIQRLSSQVSNLGMGTVLIGDMGMPA
                     GGRFNGGHASHQTGLDVDIFLQLPKTRWTSAQLLRPQALDLVSRDGKHVVSTLWKPEI
                     FSLIKLAAQDKDVTRIFVNPAIKQQLCLDAGTDRDWLRKVRPWFQHRAHMHVRLRCPA
                     DSLECEDQPLPPPGDGCGAELQSWFAPPKPGTTKPEKKTPPPLPPSCQALLDEHVI"
     gene            complement(23239..24324)
                     /gene="aroC"
                     /locus_tag="OQQ19_001619"
     CDS             complement(23239..24324)
                     /gene="aroC"
                     /locus_tag="OQQ19_001619"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HCS1803283.1"
                     /translation="MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGILLTEADLQHD
                     LDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVF
                     RPGHADYTYEQKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQM
                     GDIPLEIKDWSLVEQNPFFCPDPDKIDALDELMRALKKEGDSIGAKVTVVASGVPAGL
                     GEPVFDRLDADIAHALMSINAVKGVEIGDGFDVVALRGSQNRDEITKDGFQSNHAGGI
                     LGGISSGQQIIAHMALKPTSSITVPGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEA
                     MLAIVLMDHLLRQRAQNADVKTDIPRW"
     gene            complement(24359..25291)
                     /gene="prmB"
                     /locus_tag="OQQ19_001620"
     CDS             complement(24359..25291)
                     /gene="prmB"
                     /locus_tag="OQQ19_001620"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HCS1803284.1"
                     /translation="MDKIFVDEAVNELQTIQDMLRWSVSRFSAANIWYGHGTDNPWDE
                     AVQLVLPSLYLPLDIPEDMRTARLTSSEKHRIVERVIRRVNERIPVAYLTNKAWFCGH
                     EFYVDERVLVPRSPIGELINNKFAGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVD
                     AVDISPDALAVAEQNIEEHGLIHNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSD
                     LPNEYRHEPELGLASGTDGLKLTRRILGNAADYLADDGVLICEVGNSMVHLMEQYPDV
                     PFTWLEFDNGGDGVFMLTKEQLLAAREYFAIYKD"
     gene            25457..26008
                     /gene="smrB"
                     /locus_tag="OQQ19_001621"
     CDS             25457..26008
                     /gene="smrB"
                     /locus_tag="OQQ19_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease SmrB"
                     /protein_id="HCS1803285.1"
                     /translation="MKKKTTLSEEDQALFRQLMAGTRKIKQDTIVHRPQRKKISEVPV
                     KRLIQEQADASHYFSDEFQPLLNTEGPVKYVRPDVSHFEAKKLRRGDYSPELFLDLHG
                     LTQLQAKQELGALIAACRREHVFCACVMHGHGKYILKQQTPLWLAQHPHVMAFHQAPK
                     EYGGDAALLVLIEVEEWLPPELP"
     gene            complement(26081..26794)
                     /locus_tag="OQQ19_001622"
     CDS             complement(26081..26794)
                     /locus_tag="OQQ19_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005007603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2544 domain-containing protein"
                     /protein_id="HCS1803286.1"
                     /translation="MATPDSVNYAIFKATFMPNSQPDLVSWTGDSSTQPSMSKISDSR
                     VSMSACPGLEQYDSQTKTGWTCNELKMFVYYDGNLHGCPWIVSSFVKSRDPFAKTYDD
                     DFPDYIGPTKVSSSCPAVPLAPYDVSWNENYVVHNKVVRLQSTGGVIEQTLPTFLMEN
                     GKLCNGNNFDERGVYCRFIAQQMTFSTSGCDNAKVTVTPEPQPITSRQLHDMKLRVDT
                     TSRQPIDSTCRFTYILNMY"
BASE COUNT         6612 a         7333 c         6762 g         6108 t
ORIGIN      
        1 gcatcaagat ggttttgcat tgccgcaatg gaataacgca tcatgcgaaa agccattaat
       61 tcttccggct tactttggtg ctctatcact acataaatat aacccactcc ctcctgcgtt
      121 ttcacagacc acaagaggtc ggaataatat tgccgcaggt cttcatcaat aaaactgttt
      181 ggttccagtt taagcgtcgt taaatcacac agtttgcgca gcggcgcggg aagatgaata
      241 tcaataaaat cccgcgcggt gtctggatgg cgtaaaaaag atttaaatac cgcatcatgc
      301 ggcgtggaag ttgtcgatat tgtcatggcg ttccgtcacc cctcaaattt aagatgacgc
      361 gacaataacc acgattaaca cccaatgcag caggcagttt ttatctttgg acagcgaatt
      421 cagaagtatt tttagcggac tgcaactttt acatttcagc ggaagctgac tcgcaaattc
      481 cccatgaaaa tactccggca gcgttagcca ccggagagga aattatttca gcgatccctt
      541 aaggaactgt tgcagacgag ggctttgcgg gttgccaaat aactgctccg gcgcgccctc
      601 ttcttctatt ttcccctgat ggaggaaaat gacatgagta gaaacatggc gagcaaagcc
      661 catttcgtga gtcactacca ccatggtttt cccctcttct gccagttgct gcataatacg
      721 caacacttcg cctaccagtt caggatcgag cgccgaggta ggttcatcaa acagtaaaac
      781 ttccggttcc atcgccagcg cccgcgcgat agaaacacgc tgttgctgac cgccggaaag
      841 atgcaccgga tatttcccct gcgcacgttc gtctatcccg acttttgcca gatacttgac
      901 cgcccgctcg tgcgcttcct gcttgctcag gcccaacacc tgaatcggcg cttccatgac
      961 gttttccagc accgtcatat ggctccagag attgaagtgc tggaatacca tcgtcaggcg
     1021 tgtgcgcagt aagcgcagtt gatttttatc ggcgactttg agttgaccgt ctttgtcgcg
     1081 caccagattg atcgtctggc cattgaccac gatcgaccct tcactcggtt tttcgaggaa
     1141 gttaatgcag cgcagaaagg tacttttccc cgatcccgac gatccgatga tgcttattac
     1201 atctccggca ttcgcttgca gtgagacccc tttcagcact tcatgttcgc cgtagcgttt
     1261 gtgcaaatcg ataacgttta atttattctc ggacatcgta ttctcagtgc gttgaagaag
     1321 gtttcacatg ctgcaaccag cgtttttccg ctctgcgaaa gaggctgatc aggacataag
     1381 agatgattaa atagagcacc gcggcaatgc cgaaggcggt aaaaggttga tacgtggcgg
     1441 cgttaatatc gcgggctatt ttcagcagat ccggcacagt ggccgtaaac gccagcgcag
     1501 tagagtgcag catcaggatc acttcgttgc tgtatgccgg taacgcaata cgcagcgcag
     1561 aaggcaaaat aatgcaacga tacattttaa aagtcgagaa gccataggct ctggcggctt
     1621 caatttcccc atgcagaacc gaacggattg ccccagcaaa aatctcggta gtgtaagcgc
     1681 aggtgttaag cgtcagcgcc agcacggtac agttcaggcc actgcggaag aaagcgttaa
     1741 ggaattcggt tcccttaaca atctcaagcg tgtatatgcc ggaatagaac accagcaact
     1801 gaacatacag cggcgtaccg cgaaaaatat aggtaaataa ccagattgga aactggatgt
     1861 atttattact ggagacacga ccaatcgcca gaaacagcgc caggactccg cctatcacta
     1921 ccgacaaaat aagcagccac agagtgatcg ccacaccagt aaagcgataa ccgtcggtcc
     1981 acagcagcgg tttccagtat tcatgtaaga tttcgatcac aggtcagccc tcttcacacc
     2041 cacggagtag cggcgctcaa ggaacagcag cacaccattg gaaacagtgg tgaaaaccag
     2101 gtaaatcacg ccacagacga tggcgaaata gaacggttcc caggtacttt tgcctgccag
     2161 ttgggtggct ttgaccacat cttccaggcc gagtaacgaa accagtgcgg tagatttgag
     2221 gatcacctgc cagttgttgc caatgcctgg cagggcgtaa cgcatcatcg ccggaaacat
     2281 gatccgccga aacacttgcc cacgagtaaa accgaacgcc gtcgccgcct ctatatgtcc
     2341 tttcggcact gccataaaag caccacggaa cgtttcggta aaataagcac cgtagataaa
     2401 accgagagtg ataataccag cgaccatcgg atcgatatca atctgcccga cgcccatcgc
     2461 ctccgtcacc gtgtttagcg caatctgcaa accgaagaaa atcagcagca tcaacactaa
     2521 gtccggcacg ccacgaatca gcgtggtgta cccttcgaaa atcagccccg aaagccgatt
     2581 ttgcgagagc ttaccgccag cgccaattaa accgatgatt acagcgagca ctacagagct
     2641 gatagccagc tccagcgtga cgagcgcacc ctgtaaaata acacctgaaa acccatataa
     2701 catgctgcct gtcctgtcgt gtgtggtgaa ttaccgcctc ttgtctccct ccggttaccc
     2761 gaagggagcg ggctttcttt caccgatggc gattagccac cataaacatc aaaatcgaag
     2821 tactttttcg ctaatttctc gtaagtaccg tcagcgcgca tttcggcaaa ggctttgttc
     2881 agtgcttcgc gcagttcgtt atcttcttta cgcaggccca tgccggtccc tacgccaaac
     2941 agtttttcat ctttaacaga cgggccaccg aatttgtaat ctttaccgac aggttgtttg
     3001 aggaaacctt cgctggcagc gacctcatcc tggaacgcgg catcaatacg tccggcagtc
     3061 aggtcagaat aaatgttgtc ctgcccctga tacgagacga tttcaatgcc ttttggtgcc
     3121 caatgttcat taccgaacgt ctcctgggtg gtgccctgca atacgcctac ccgtttgcct
     3181 ttcagcgact cgactgtcgg ctgaatgtca gaatttttcg ccaccaccaa acgagaatcg
     3241 gcagcgtaca gtttgtcggt gaaggctatt tcttgctgac gtttttccgt aatggaaagc
     3301 gatgacatga tggcgtcaat cttcttcgct tttaaggacg ggattaacgc atccagcgga
     3361 ttttcgacaa acgtacattg cgtattgatg cgtttgcata attcctttgc cagatcgata
     3421 tcgaagccaa ccagttcgcc ttgtgaattt tttgattcaa atggcgcata ggtcgggtcg
     3481 gtaccgatgc ggatgttttg cggaatcgca gcaaatgccg cagttgcgct ggagaaggcc
     3541 agaaccagag agagcgatag caccagtttt ttcataatgt cctcaactga cagtcttttt
     3601 atagggaata tttacaggtt tgttacactt atcgtgccat aaaattgacc atcaaggcaa
     3661 aatatcccgc cccgttagat gtattatttt tcattaaaaa tgcttaagta tgcatttcaa
     3721 tgcaccacga tagtgcaaca aacctagcgt gcaccatgat gatcattcca tcaggtacag
     3781 cttcccagcg acgtatcagt caccgtagac attaaagtcg aaatactttt tcgccatctt
     3841 gtcgtaggtg ccgtcctgac gcagctcgcc aagcgcctta ttgaaggcag ccgtcagttc
     3901 agcatcatct ttacgtagcc ctacaccggt gccatcaccg aagtattttt tgtcttttac
     3961 tgatgagcca gcaaaggcga aatctttacc agcaggttgc ttgaggaatc cttcgctggc
     4021 agcaacttca tcttgtaacg cagcatccag acgtcctgca gccagatcgg aatagaccaa
     4081 atcctggttg gcataggcca ccacatccac gcctttgcta cgccaggtct cgttagcgta
     4141 agcttcctgg gttgatccct gcagcacacc aacatgttta cctttcagtg aatccagcgt
     4201 tggctgaatc ggtgaacctt tggcagcaat caaacgagaa tctgcggcgt acagcttgtc
     4261 ggagaaggca atctcctgct gacgtttatc ggtaatggaa agcgacgaaa taatggcgtc
     4321 gatttttttc gctttcagtg aggggatcag cgcgtcaaag tcactggcaa cccaggtaca
     4381 tttcacctgc atccgtttgc acatctcgtt accgagatcg atatcaaagc caacaaaatc
     4441 acctttagca tctttcgacg agaacggcgc ataggtggta tcggttccga tacgtaccgt
     4501 ctccggtagc gccgcatagc tggaagccgc tgcggagaga ccgactaaca aagacagagc
     4561 gagaatcgac ttcttcatac ataaccctca agtgaaaatg gcttttttat gttgtgtatt
     4621 gtgttgtgtg tttgcaggct ctttcaagca ggtcttatgc catcttgacg acaacagtaa
     4681 cattcaacgt taaatatgtt aataagacgt tgcattattg tcctgaagtt gaagatagca
     4741 ggtatagcgg ttgaatcgca gcgtttcgat tgaatggcag aaacaaaatg tcgaggattt
     4801 gatcgcggtt gcaaaattgc cctgaaacag ggcaacagcg gagttatgcg cccttccagc
     4861 gggcaaagag atcttcagga agggttattg caaactggtc aagaacacga ttaaccgtct
     4921 gatttatcac atcatcaagg gattgcgggc gatgataaaa cgccggaaca ggaggcataa
     4981 tcaccgcacc gatttctgcc gcctgagtca ttaaacgcag atggcctaag tgcaatggtg
     5041 tttcacgcac gcagagcacc aacgggcgac gctctttcag caccacatct gccgcacggg
     5101 tcagtaagcc atcagtatag ctatggacaa tgccggaaag ggttttgatt gaacagggta
     5161 aaatcaccat ccccagcgtc tggaaagaac cggaagagat gctggcggaa atatcgcgcg
     5221 catcgtgcgt gacatcagct aatgcctgca cttcgcgcag ggaaaaatcc gtttcgaggg
     5281 ataaggtctg gcgcgccgcc tggctcatca ccagatgcgt ttcgatatct gtgacatcgc
     5341 gcagaacctg taataagcgc acgccataaa tcgcgccgct ggcaccgctg atgcctacaa
     5401 tgagtcgttt cataaatagt tgccctgtca gacttgcagg cagactttgc agtatttcgg
     5461 cgggagttgc aagtcagggt gccagaccgg caccctcagc gaaggcatca tccttcgtta
     5521 tgcatttcga gattttccac ttcgttctga cgttgcactg ctttggcgtc atcattacgt
     5581 aacgtatcga ggaaatcgag gtagtcctga tcaacatctt tggtgacgta gacgccgttg
     5641 aacaccgagc attcaaactg ctggatatcc ggattttcag cgcgaacggc gtcgatcaga
     5701 tcgttcagat cctggaaaat caacccgtca gcaccgatga tctggcgaat ttcatcaact
     5761 tcgcgaccgt gagcgatcag ttccgtggcg ctcggcatat caataccata aacgttcggg
     5821 aagcgaattt ccggggccgc agaagcgagg tacactttct tcgctccggc ttcgcgtgcc
     5881 atctcgataa tctgctcaga agtggtgcca cggacgatgg agtcgtcgac cagcaggacg
     5941 tttttatcgc ggaactcggc gcggttggcg ttcagtttac ggcgcacgga cttacgacgc
     6001 agctgctggc ccggcatgat gaaggtgcgg ccaacatagc ggtttttaac gaagccctgg
     6061 cggtacggct tgcccagaat acgagcaatt tccagcgcga tatcacacga ggtttccggg
     6121 atcgggatca ccacgtcgat atccagatct tcccattcgc gggcaatttt ctcacccagt
     6181 ttcgtgccca tattcacacg cgcgctgtaa acggaaattt tgtcgataaa cgagtccggg
     6241 cgggcaaagt atacatactc aaacaggcac ggattgctga ccggattgtc agcacattga
     6301 cgggtaaaca actgcccttc ttcagtgatg taaatcgctt cgcccggcgc gacgtcacgc
     6361 aggaaatcaa agcccagcgt atcgagcgct acgctttcgg aagcgaccat atattctgta
     6421 cggttctcgt caatatcacg ttttcccagt accagcggac gaatcccgtt tggatcgcgg
     6481 aaagcaacca taccgtggcc gataatcatc gccacacagg catatgcgcc gcggattaag
     6541 cggtttgtgg cagcaatggc agcgaaaata ttgtcggctt ccagcgggta gtggcggaag
     6601 ttgtccagct cgctagcgaa gatattaagc agaatttccg agtcggaagt ggtgttgatg
     6661 tggcggcgtt tttcttcaaa cagtttttta cgcaactcgt gagcgttggt cagattgccg
     6721 ttgtgggcaa gcgtaatgcc atacggggag ttaacgtaaa acggctgcgc ttcagaggcg
     6781 ctggagctgc cagccgtagg gtaacgcaca tgaccaatgc ccatattgcc ctgcaaacgc
     6841 tgcatatggc gagcttcaaa tacatcgctc accagcccgt tcgctttacg caaacggaag
     6901 cagttattgg catctatggt gatgatgccg gcggcatcct gaccgcgatg ctgaagcacc
     6961 gttaaggcat cataaatcga ctggttaacc ggcataacac cggcgatacc gacaataccg
     7021 cacatacgtc tttttcctcg ttaagccaca tctcagagca cttacgctct gggcaagaaa
     7081 cttgacgagc tttgcagata atcaaaaaac catctgatga taaaactgaa ctgcgggatc
     7141 agctgtgatt tgctccagtc ttcgcttttc gacaccccgg taaaggagtc gagaaagaag
     7201 agaatggcgg caacaatcaa cacaccgcgc aacgcaccga aacagacgcc cagcacccga
     7261 tcggtgcctg acaaccccgt tttctccacc aactggccta tcacgaagtt cacgatagca
     7321 ccaacgatca gggtagcgat aaacagtacc gcgatggcaa ttccatttcg aaccagttcg
     7381 tcttcaaagc ccgtaaacca gactgacagg taagtgtagt aatgactggc aacaaagaaa
     7441 gcacaacccc atgtcaccag cgataacgct tcacgaacaa agccgcggat caggctaacc
     7501 agagaggaaa aagcaatcac cgcgattatg gcgtaatcaa tccagaccat atgtgtccca
     7561 cgattttacg ccctgtcatc ctgttcgggg cgcattctaa cagaaaaaga aaacgtttgc
     7621 gtagggattt ccttcccacg catcaataaa aatggcgctg aaaaaatatt caacgccatc
     7681 gactttttat gcctttgcgg catcgtgcaa tgcgtgtcgg atgcggcgta aacgccttat
     7741 ccgacctacg gttctaacac tgcccaagcc tgataagacg cgccagcgtc gcatcaggca
     7801 agactgtatt aattcggcgt atagcccatt accacgccac ttaagccaga aagttgcttc
     7861 aactcaccca gcgaaccttt cagcttatct ttcgaggcat ccggcccaac cagaatacgg
     7921 gtaattttac cctgcactgg cgtggatggc gacgtataaa cccgataacc ggcaccgcgc
     7981 agcttaccga caatctcatt cactttatcg gcatttttca gcgcacccag ttgcacaaca
     8041 taggctttac ccgttggcgc tgctttttct tccacgaccg gcttcggttc tggcttcggc
     8101 gcaggtggtg cttcaacctt cggtttaggc ggctccaccg gtttcggctt cggtggggcg
     8161 accggtgcag gttccggttc aaactcggtg ttattggctg caatagtggc cggatcgagc
     8221 gacggtgctg cggcatcacc tgcccgcacc tcttccgctg cgccttccgg cggctgcgtc
     8281 ggcaacgcct gggtggcggc tggcatcata tcaggctcat cgcgatcgcc cgcttttgga
     8341 accagcggga tagccgcaaa ctcatcctga taatgttttt tctgcccgtc cagcagccct
     8401 ggaagtacaa tcacccccag cgccaccagc acgatcgtgc ccactaaccg attctgaaac
     8461 ttacttgcca ccgcttctcc tcgcgtcaat cacttccatg acatgtgcga ccgtgtggaa
     8521 agaaccacac accagcacgg tgtcttccgc tttagcgtcc gccattgcgg catcccatgc
     8581 ctgcgcaacg ctatcaaatg atttgccgtt acccaaatgc tcaagcagtt gttctgccgt
     8641 ggcaccgcgc ggcccttcca gtggcgcaca ataccagtca tcaaccacgc ttttcaacca
     8701 ggccagagtt ccggcaatat ctttatcatg tagcataccg ataaccgcca gcacgcgccc
     8761 gtttttcggt agcgctttca tacgcccggt gagatattcc gccgcatgtg gattatgcgc
     8821 gacatcaaaa ataacgcgtg gcgactcgct cacaatctgg aaacgtcccg gcaaaattgc
     8881 gctggcaatc ccgtcgcgaa tggcattttc actgacttcc agcccgctgg cacgcagtgc
     8941 cgccagcgct gttgcggcat tcggttgcgg gacaagcggc aacggcagat tttccagcgt
     9001 gccgtgagca tcgctaaacg cccagtcatg atcggtgacg gaatagttcc actcaacgcc
     9061 ccgacgttgt aacagtgcac ctttttcctg cgccacatca gcaatggtag aaggcatttc
     9121 cggctcaccg acaattgccg gttttgcgct gcgaaagatg cctgctttct cgcgaccaat
     9181 actttcgcga tctggcccca gccagtcggt atgatccagc gcaatactgg ttactaccgc
     9241 gacatcggca tcgacaatat tggttgcgtc cagacgaccg cccagcccta cttccagaat
     9301 caccacgtca agttgtgcct gtttgaacag ccacaacgcc gacagcgtac cgtactcgaa
     9361 ataggtcagg gaaatatcac cgcgtgccga ttcaatctcc gcaaaagagg cggtgtgggc
     9421 cgattccggc aattcctgac cctgcacacg tacgcgctcg gtataacgca ccagatgcgg
     9481 cgaactgtag acgcccactt tgtaccctgc cgccatcaga atcgactcca gcgtacggca
     9541 ggtggtgcct ttgccattcg tacccgcaac ggtaaacaca aatggcgctg gtttcagaac
     9601 gccaagacga gccgcgacct ggctcacgcg ctcaaggccg agatcgatag ttttactgtg
     9661 caggttttcc agataagaaa gccacgaagc cagaggcgac gcggcttgag gagtgcgttt
     9721 gataatcatg gtatccgctg attcgttacg gtgagaatag caaaagggca gagccagtgg
     9781 ccctgccctt atcagttatc aggcctcagg ttcctgatcc ggtaccgggg gtaccactac
     9841 gccttcacgc ggcgcttcag gattcggcgc tggcagattc atcaacttcg ccagaatgct
     9901 cgccagtttc aggcgcattt ccggacgacg gacgatcatg tcgatcgcgc ctttctcgat
     9961 caggaattca ctgcgctgga atcctagcgg cagtttttcg cgaacggtct gttcgataac
    10021 acgcggaccg gcaaagccaa ttaacgcttt cggttcagcg atgttgagat cgcccagcat
    10081 ggcgaaactt gcagaaacac cgcccatcgt cgggtcggtc agcacggaga tgtacggcaa
    10141 gccgcgctcc tgcatttttg ccagtgccgc agaggttttc gccatctgca tcagcgacat
    10201 cagtgcttcc tgcatacgtg cgccaccaga ggcggagaag cagatcagcg ggcagttatc
    10261 ttccagcgcc tgctcaacgg cacgcacgaa acgtgcaccc acaacagacc ccattgaacc
    10321 gcccataaag gcgaactcga atgccgcagc gacaaccggc attccataca gagtgccttt
    10381 catcaccacc agcgcatctt tttcgccggt ttctttctgc gcagaagcca gacggtcttt
    10441 atacttcttg gagtcacgaa acttcagcac atctttcggc tcaagctcgc tacccatctc
    10501 cacaaggctt ccttcatcta acaggctatg caggcgatta cgcgctgtca tacgcatgtg
    10561 atggtcacac ttcggacaga cctcaagatt acgttccagc tcagcgcggt ataaaacctg
    10621 accgcagcta tcacacttag tccacacccc ttcaggaatg ctcgccttgc gggtgggagt
    10681 aatgttgctt ttaattcgtt caatccagct cattagggac ctttctgtct gaacctggtt
    10741 cgatgccagt tttatctttg gggacgcata atgccatttt tgcccccaac agaccatgaa
    10801 tgttgcacat taaaacataa cagcccgaaa ctttggataa aaaagtggtc gaaccgcgga
    10861 gttacttttt attttgcggc gcgtgccgca gcgcgtttgt gacgaataaa ttcgaaaacc
    10921 ccaggcaata ttgaaacaaa aataatgcca acaatcatca gcttaaggtt gctctgaatg
    10981 aaggggagca tgccgaagaa ataacccgcg taggtaaaaa tcagtaccca caacagtgcg
    11041 ccgatcacgt tataagcggc gaaatgacgg tacgacatgt ggcccattcc cgcaacaaac
    11101 ggcgcgaacg ttctgacgat cggtacaaaa cgggcgagaa taatcgtttt gccgccatgt
    11161 ctctcgtaaa actgatgagt cttatcaaga taactgcaac gaaagatttt cgaatccggg
    11221 ttactgaaca gtttgtcacc aaataaccgt ccaatggtat agttcactgc atcaccgaca
    11281 atagcggcaa tcaacataag caccaccatc atatggacat tgagatcgtt agtttccagc
    11341 gacgccaatg caccagcaac aaacagcagc gaatcaccag gcaggaatgg cgttaccacc
    11401 agccccgttt cgcagaacag aatcaaaaac agaatggcat aaacccagac gccgtactcc
    11461 gcgaccagct ctgccagatg cacgtcaatg tgcaggataa aatcgatgag gaaataaatc
    11521 aggtccatat ttgcctatgc cttgtactcg tcatctttca ggctgtaact acgttggcta
    11581 cagcctgaaa tgttccgagc attattctcg ttagtccgcc agaaatagcg ggcccattgg
    11641 cggttttgga agatcatacc ggtcagggta atccaccgcg accagataca gcccttccgc
    11701 ttttgccgtt gctgccgcca gcgttctgtc ctttgccgcc agcaactctg ctatccagct
    11761 ctccggctgg ttgtgggcac cgacttccat caggctgccg acaatattcc tgaccatatg
    11821 atgtacaaag gcattcgctt tgatatctac caccacataa ggaccgtgac gcgtgacatt
    11881 aatatgcata acgttgcgcc acggggttcg ggactggcac tgcaccgcac ggaacgaggt
    11941 gaaatcattc tcgcccagca agcattgcgc agcccgatgc atccgttcag cgtccagcgg
    12001 ttcgtaaaaa tgggttaccc ctttactcag taccgccggg cgcagccgat gattgtagat
    12061 gatgtagcga taacggcgag ccgtggcgct aaatcgggca tgaaaatcat caggtacagc
    12121 tttaacccaa cgcacggcga tgtcatcagg taaattcgca tttacgccca aggtccacgc
    12181 cgcgtctttg cgcggcgcgg ttgtttcgaa atgcaccacc tgcccggtac cgtgtacccc
    12241 tgcgtcagta cgcccggcgc agaagacggt gatgggttcg ttcgccacct gggagagcgc
    12301 cttttccagc ttctcctgca cactgcggac ttcattctgc cgttgccagc cgtaatactt
    12361 actgccgtcg tactcaatgc ccagcgcaat tttataaact ggcagttgtt gctggtcgga
    12421 cattagtaca gatactcctg caccagtttc tcggcgattt ttactgccat cagcgcgccg
    12481 ccaaagcgaa cgttatcggc caccgaccag aactggactt gctccggcat accgtagtca
    12541 ttacgcacgc agccaacaga aagatgcgga gtacccgaag catcccctac ctgagtcggg
    12601 aattcgttct cttcagagag cacaatatct tcgccctgag caaacgcatc acgcgcttct
    12661 tctgccgcca gcggacgcag tgcttcaaag ttgaccatct gggcatgacc gtagaatacc
    12721 ggtgcctgga cgacgcttgc cgaaatcatc agcccttcgt cctgcaggat tttgcgtact
    12781 tcgtcaacga tacgacgttc ttcacgcacg ctaccttcgc tatccggcaa caacggcagc
    12841 atattgaacg ccagttgacg accgaagaaa tcttcttcgt caatcggaat gccgttgagc
    12901 aatttcgcac tctgccccgc taacgcatcg accgcttttt tgccctgggc ggaggctgaa
    12961 atcaggctgg taacactgat acgcgacaaa ccgccctgat cgattaacgg tttcagtgcc
    13021 gccagcagct ggctggtcag actgtctggt acggcgatga cattccggtt gcggtaatcg
    13081 gtcagtacaa acgggtttac ttccggcacc accagcggta cgtcgggttc gagagcaaac
    13141 agtccgctgc tgtcgatcac caggcaacct gagttggtcg cttcttcaac ccaggcagcg
    13201 gtagcttctt tgcctgcgac aaaaaatgcc agctgcgcct gcgtccagtc gaattcagcg
    13261 gcatcctgca cggtgattgt tttaccacca aagcgcagtt gttcgcctgc gctttcgtta
    13321 cgtgccagtg cataaatttc cccaaccggg aactgacgtt cagccagcgt ttcaagcagg
    13381 gcttcgccca cagcgccagt tgcgcccagg acggcaatgt tccagccttc agacatggtg
    13441 gtttactcca gaaatagcaa agctccctgc caatgttaca gcagagagca tgaagaagag
    13501 attaacgtgc cggatgatga acggcgttaa aacccagttt acacagcaat gatgccgcac
    13561 tggcgtcatc acaaattaca tacagagatg accattcacg gcgctcaaga tagtttttgc
    13621 gcagtttatc gaactcaccc ggtatcccgg cgactttacg cagcggtgcg tcatcgcggc
    13681 gcacatcata caccaaatgc accagccttt tcagcgtcgg ttgatcgagc gggccatgca
    13741 gcgtaatgcg accaaactct ggcgcgggca gtaatgtatc cagcgcaacg tgctgttcat
    13801 gcccaataaa cttgctataa gcttcaaaca cttgcgtagt accgcgtgct ttaccttcca
    13861 gggtataacc tgcgatatgc ggcgtgccga tatccacttt tgtcagcaac tccacgttaa
    13921 gttccggttc gccttcccag acatccagca ctacgcttaa cttctggcct tcattcaggc
    13981 aggtcagcaa cgcagtatta tcgacgactg cgccacggca ggcgttaatc agaatcgctc
    14041 ccggcttcag gctacggatc agtttttcat ccgccagatg cagcgttttg tacggcccat
    14101 ctttgaagag tggcgtatgg aaagtcagaa tatccgcatg ctgaactaat tcatccagcg
    14161 agcggaaatc accctcatcc ccacggtcag cgcgaggcgg atcgcaaagc aatgttttaa
    14221 tccctaacgc ttccagtcgc gcctgcaatc gacgtccaac gttaccaacg cccacgatcc
    14281 ccaccgtacg gtcgtgcagt gaaaatccat cgcgttcggc aagcatcagt agtgaggaga
    14341 aaacatattc caccaccgca atcgcattac agccaggtgc agcggaaaaa ccaattcccg
    14401 cctgcttcaa ccatgcttca tcgacatggt cggtccccgc agtggcagtg ccaacaaatt
    14461 taatgggttt tcctgccagc aaagattcat tcactttcgt gaccgaacgc accatcagcg
    14521 catccgcgtc tgccagttga gcgacggcga ttggacgccc gggaaccgcg gtcacctcac
    14581 ccaaacggct aaataagtcg cgggcataag gcatattttc atcaacaagg attttcacgt
    14641 ttgtgttacc tgtatgagac gagagttaac cggacaagtg tgccataatc tcgcggccag
    14701 gcatacttgc gaagatttca ggtataagga tacgtaatga tacaacctat ttccggccct
    14761 cctcctgggc aaccaccagg tcagggagat aacctgccgt ctggcgcggg caatcagcct
    14821 ttatccagtc agcaacgtac ttcgctggaa agcttaatga cgaaagtgac ctcactgacg
    14881 caacagcaaa gagcagaact gtgggcgggt atcaggcacg atattggtct gtcgggagat
    14941 tcaccgctgc tttcgcgtca cttccctgcc gctgagcata atctggcgca acgtctgctg
    15001 gccgcgcaaa aaagccattc tgcccgccag cttttagcgc aattagggga gtatttacgt
    15061 ctggggaata atcgtcaggc ggtcacggat tatatccgtc ataactttgg tcagacgccg
    15121 ctgaatcagc tctcaccgga gcaattaaaa accattctca ccctgttgca ggaagggaag
    15181 atggttattc cgcaaccgca gcagcgcgag gcgaccgacc gtcctttatt accggcggag
    15241 cacaatgcgc taaaacagct ggtgaccaaa cttgcggcgg caacggggga acccagcaaa
    15301 cagatctggc aatcgatgct ggaactttcc ggggtgaaag atggcgagtt aattccagcg
    15361 aaactgttta accatctggt gacctggcta caggcgcgtc agacgctaag ccagcaaaat
    15421 acgccgacgc tggaatcact acagatggcg ctaaaacaac ctttagatgc cagtgaactg
    15481 gcggcgttat cggcatatat ccagcaaaaa tatggccttt ctgcgcaatc atcgctttct
    15541 tctgcccagg ccgaggatat tcttaatcag ctttatcaac ggcgggttaa agggattgat
    15601 ccgcgtgata tgcaaccgct gcttaatcct tttccaccga tgatggacac gttgcaaaat
    15661 atggcaacgc gtcccgcgct gtggatactg ttagtcgcga ttatcctgat gctggtctgg
    15721 ctggttcgtt aaccccgacg aaatgacagt atcgtgacaa taatacccag caccgcagag
    15781 atcgccccgg caagaaatac cgaagagtaa ccaaacgtgg tcgccagcat tcccgccagc
    15841 ggcccggaga cgccgagggc gatatcctga aacgcggcgt aaccgcccag tgcggtgccg
    15901 cgaacttgtg aggggacgcg tttaaccacc tccacgccca gcgcaggaaa gataagcgaa
    15961 catccggctc cggttaacgc cgcgcccgct aatgcgaccc atgcacctgg ggcttgccag
    16021 agcagcaaca agcccaccgt ttctacaagc agagagacaa tcgccacttt cacgccgcca
    16081 aaacggtccg gcatccagcc aaacatgacg cgcatcacga caaatgcgcc gccaaacgcg
    16141 gtaagagtaa agcccgccat cgcccatcct ttgctggcaa agtagagcga aacgaaagtc
    16201 ccgataaccg caaaaccaac gccttgtagt gccagcccta accctggttt ccagataagc
    16261 ccgacaacgc tccacagcga tggacgttct cccgccaggg ccggtacttt gcgcactgtg
    16321 ccgttacagg cccacgccag taagggtaat accattgtgg tgatcgccag tgcggcaaaa
    16381 ccgtaatggc tatgaatcaa caggccaagc ggcgcaccaa cagcgagggc accgtaaatc
    16441 gccattccgt tccatgacat cactttgcca gagtgttttg cccctacgat gcctaatccc
    16501 caggtcagag cgcctgtcag taactggctt tcaccaaagc caagaatcaa acgcccgacg
    16561 accaacaggg caaatttcaa cggtgcggag acaggcaaaa tcgccgccag cagcaacgcg
    16621 ccgccagcca gaccacaagc taacatcccc tgaagcgccg aacgttttgc accatattga
    16681 tcggccagtc gcccggcata gccacgcgtc agcaccgtag ccagaaactg aatcccgacg
    16741 gcaatcccga ccatggtatt gccatagccc agatcatgat gaacaaacag cgggataacc
    16801 ggcaacggca gccctacggt catgtaggtg agaaaaaccg caaaagcgat gcggaagagc
    16861 gaaaaattgg cagaagatcg tgtttcggtt tggcttacag cagtcatgca ttactccaga
    16921 atgcagcgca aggcgaggag tatccccgtc tcatctctct ggtttcaggg ttacagtgcg
    16981 ttggcaggat ttaacgcgta cgtcttttca gaaggaaatc gacaaagcgg gaagtttgcc
    17041 tggaactggc ggcgattgtc aatgatgtga aaaagggaac catcaggttc ccttttgcgt
    17101 tagtgccgga ggccgcattg gcgcgtaacg tcggatgcga cgctggcgcg tcttatccga
    17161 cctactccga ctactccgac tactccgact actccgacta ctccgactac tccgactact
    17221 ccgacctact gcgaattaat ctttcagctt gcgcattacc agcgtggcgt tggtgccgcc
    17281 gaagccgaag ctgttagaca taacggtggt cagttcgcga tcggtcgttt cggtcacgat
    17341 gttcagacct gccgcctgct cgtccagctc ttcaatgttg atgctcgggg cgataaagcc
    17401 gtgttccagc atcagcagag agtagatagc ttcctgtacg ccagcagcgc ccagagagtg
    17461 accggtcatg gctttggttg cagaaatcgc cgggctctta tcgccgaaca cttcacggat
    17521 agctgccagt tctttcacgt cgccaaccgg agtcgaagta ccatgagagt tcaggtaatc
    17581 gattggggta tcaacgccgt gcatcgccat cttcatgcag cgtactgcgc cttcgccaga
    17641 cggagcaacc atgtctgcac catcagaggt tgcgccgtag ccaacgattt cagcatagat
    17701 gtgagcacca cgcgccagcg cgtgttccag ctcttcaacc actaccatac cgccgccgcc
    17761 agcgataacg aaaccgtcac ggtgagcgtc gtaagtacgg gaggcttttt ccggggtgtc
    17821 gttgtattta gtagacagcg cacccatcgc gtcgaattcg caggccattt cccagcacag
    17881 ctcttcgccg ccgccagcaa acacgatgtc ctgtttgccc agttggatct gctctactgc
    17941 gttaccgata cagtgtgcgg aagtcgcaca cgcggagctg atggagtagt taacgccatg
    18001 aattttaaac ggcgtggcga ggcaggcaga aacgccggat gccatcgctt tggtgaccac
    18061 atacgggcca accgctttca ggccgcgcgg gccgcgcatt gcgtcagcgc cgaatacctg
    18121 gaaacgcggg gaaccgccgc cagaacctgc aatcaggcca acgcgcgggt tattctggta
    18181 agcttccgga gaaaggcccg catctgcgat tgcctgctcc atagaaagga atgcataaat
    18241 ggatgcgtcg ctcataaagc gcacaacttt gcggtcaatg aggccagtgg tatccagttt
    18301 tacgttgccc cagacgtggc tacgcatgcc ggaatcctta agctcctgag agaaagtgat
    18361 ccctgaacgt ccttcacgca gagatgccag gacttcctgc tggttattac cgatgctgga
    18421 aacaatgccc aggccagtaa tcactgcacg tttcattcaa tacctctgta agtcgcacat
    18481 agagtaagtt tcgaatgcac aatagcgtac acttgtacgc cgaacaagtc cgatcagcca
    18541 tttaatagag aaatttgcgc agccttacac acatcgctaa gatcgagcca ccgcctgtaa
    18601 gacgagtaac ttacgtgaaa cactactcca tacaacctgc caacctcgaa tttaatgctg
    18661 agggtacacc tgtttcccga gattttgacg atgtctattt ttccaacgat aacgggctgg
    18721 aagagacgcg ttatgttttt ctgggaggca accaattaga ggtacgcttt cctgagcatc
    18781 cacatcctct gtttgtggta gcagagagcg gcttcggcac cggattaaac ttcctgacgc
    18841 tatggcaggc atttgatcag tttcgcgaag cgcatccgca agcgcaatta caacgcttac
    18901 atttcattag ttttgagaaa tttcccctca cccgtgcgga tttagcctta gcgcatcaac
    18961 actggccgga actggctccg tgggcagaac aacttcaggc gcagtggcca atgcccttgc
    19021 ccggttgcca tcgtttattg ctcgatgaag gccgcgtgac gctggattta tggtttggcg
    19081 atattaacga actgaccagc caacaggacg attcgctaaa tcaaaaagta gatgcctggt
    19141 ttctggacgg ctttgcgcca gcgaaaaacc cggatatgtg gacgcaaaat ctgtttaacg
    19201 ccatggcaag gttggcgcgt ccgggcggca cgctggcgac atttacgtct gccggttttg
    19261 tccgccgcgg tttgcaggac gccggattca cgatgcaaaa acgtaagggc tttgggcgca
    19321 aacgggaaat gctttgcggg gtgatggaac agacattacc gctcccctgc tccgcgccgt
    19381 ggtttaaccg cacgggcagc agcaaacggg aagcggcgat tatcggcggt ggtattgcct
    19441 gcgcgttgtt gtcgctggcg ctattacggc gcggctggca ggtaacgctt tattgcgcgg
    19501 atgaggcccc cgcactgggt gcttccggca atcgccaggg ggcgctgtat ccgttattaa
    19561 gcaaacacga tgaggcgcta aaccgctttt tctctaatgc gtttactttt gctcgtcggt
    19621 tttacgacca attacccgtt aaatttgatc atgactggtg cggcgtcacg cagttaggct
    19681 gggatgagaa aagccagcat aaaatcgcac agatgttgtc aatggattta cccgcagaac
    19741 tggctgtagc cgttgaggca aatgcggttg aacaaattac gggcgttgcg acaaattgca
    19801 gcggcattac ttatccgcaa ggtggttggc tgtgcccagc agaactgacc cgtaatgtgc
    19861 tggaactggc gcaacagcag ggtttgcaga tttattatca atatcagtta cagaatttat
    19921 cccgtaagga tgactgttgg ttgttgaatt ttgcaggaga tcagcaagca acacacagcg
    19981 tagtggtact ggcgaacggg catcaaatca gccgattcag ccaaacgtcg actctcccgg
    20041 tgtattcggt tgccgggcag gtcagccata ttccgacaac gccggaattg gcagagctga
    20101 agcaggtgct gtgctatgac ggttatctca cgccacaaaa tccggcgaat caacatcatt
    20161 gtattggtgc cagttatcat cgcggcagcg aagatacggc gtacagtgag gacgatcagc
    20221 agcagaatcg ccagcggttg attgattgtt tcccgcaggc acagtgggca aaagaggttg
    20281 atgtcagtga taaagaggcg cgctgcggtg tgcgttgtgc cacccgcgat catctgccaa
    20341 tggtaggcaa tgttcccgat tatgaggcaa cactcgtgga atatgcgtcg ttggcggagc
    20401 agaaagatga ggcggtaagc gcgccggttt ttgacgatct ctttatgttt gcggctttag
    20461 gttctcgcgg tttgtgttct gccccgctgt gtgccgagat tctggcggcg cagatgagcg
    20521 acgaaccgat tccgatggat gccagtacgc tggcggcgtt aaacccgaat cggttatggg
    20581 tgcggaaatt gttgaagggt aaagcggtta aggcggggta atctgctctc gcagtgtttg
    20641 ccggatgcgg cgtgaacgcc ttatccgacc tacgtgtgac gtgtaggcct gataagacgc
    20701 gataagcgtc gcatcaggca tggtgctcca gacgccgcaa cttactgctg tgacgcctgc
    20761 tgaaacaggt tttcccacat atcggtcacc agcgcctggt cacgcggcga caattcaccg
    20821 gcaccaatgg ctttttccag actctggcta acggtcgtat gcaccgcctg agcggagtgg
    20881 tcatcaccac tttccagttc tgcgatggct aatgtcaggt ggccacgcaa atacccactg
    20941 gcaaacaact catcatcact ggcatggtca atcatgccgt cgattaatgc cagaatgcgt
    21001 gattcaaact ccgcgatcat cttctttcct cattgtaaaa cgtggcaccg gcttcagttg
    21061 agcgcttccg gccacgggaa ctgttccgcc gtaagttccg gcgtgtgata ataattttgt
    21121 agtgctttaa tgaagcgtgc cggacgctcg ggaatgccat ttgtcagata atccatcacc
    21181 tgcgcatgta cccgccgttg aaacaccaca cgatccggtt cgaagtcgcc ttccagattg
    21241 tcgcaactga cgttaaacgg atatcccgcc gccacacaga acaaccagtc gagtgcctgc
    21301 ggcttcactt caacatcttc aaactggctt tgcgtttggg catcacgccc atccgggcaa
    21361 taccagtagc cgaaatcaac cagctcacgg cgcgcttttc cggcaataca ccagtgcgaa
    21421 atctcatgaa ttgcgctggc ataaaagccg tgggcaaaga caattcggtt atacggtact
    21481 tccgcatcag caggaagata gatcggttcg tcgtcgcctt taatcagacg ggtattaaat
    21541 tcatcggcaa agcagctatt aaaaatttca atcaactgct catagtggtg tgtactgttc
    21601 attagttcat ccccaaccag tggaggatct cctgtccgtg gctatcgtaa agtaatttgg
    21661 cactcatcac cgccgagacg ataacgatca tcgggcggat cagtttttgt cctttgctca
    21721 gcaccagtct tgaacccatg cgcgcgccga ggaactgccc caccagcatg acaaagcccg
    21781 tcgcccaaat cactttgccg ccgagaataa acagcagcag accgccaatg tttgacgttg
    21841 cgttgagtaa tttggcgtga gccgtggctt tggcgaggtt gaatccgcac agcgtaacga
    21901 aggccagcgc gtaaaacgat ccggcagccg ggccaaagaa tccgtcataa aaaccgacgc
    21961 agccaccggc aattaacgcg aagggtaaac cgtacatccg gcgctggcga tcttcttcac
    22021 ccagctttgg catcagcaag aaatagaggc cgatacaaat taccagaatg ggcaaaatct
    22081 gccgtaagac atcagcctga acgtattgca ccagcagtgc gccgctcatt gagccggcaa
    22141 aggtcatggc gatattgagt ttctgatcgc ttaaactaac cactttgcgg cgaataaagt
    22201 agatagtggc ggaaatagag ccgccgcagg cttgcagttt attggttgcc agcgcgttag
    22261 cgggagacat tcccgcagcc atcaatgccg gaatggtgag taacccaccg ccaccggcaa
    22321 tcgagtcgat aaatcccgcc agcatggcga caaaaaagag aactcccagc aacagcgggg
    22381 aaaccataaa caggctatta aacgtttcca ttagatcacg tgctcatcca gtagcgcctg
    22441 gcaggaaggc ggcaacggag gcggtgtctt cttctcaggc tttgttgttc ctggttttgg
    22501 aggtgcaaac cagctttgca gttctgcccc gcaaccatcg cctggtggcg gtaaaggttg
    22561 atcttcacac tccagactat cggcagggca acgtaatcgt acatgcatat gcgcgcgatg
    22621 ctggaaccag ggtcgcactt tgcgcaacca gtcgcgatcg gtgcccgcat caaggcaaag
    22681 ttgttgttta atcgccggat taacaaaaat gcgcgtgacg tctttgtcct gggcggcgag
    22741 tttgatcaag ctgaaaattt ctggcttcca cagcgtggag acaacgtgtt taccgtcgcg
    22801 ggaaactaag tccagtgctt gcgggcgcaa gagctgcgcg gaggtccagc gagttttcgg
    22861 cagttgcaga aagatatcga catccagtcc ggtctggtgg ctggcatgac cgccgttgaa
    22921 acgcccacca gcgggcatcc ccatatcgcc aatcagcacc gtacccatgc ccagattgct
    22981 cacctggcta ctcagacgct ggataaacat caccagatcc gggtgaccga aatagcgacg
    23041 ctgatcggta cgcatgacct gataatgttc ggactgtatc ggcaacgtgt cagcgccgac
    23101 aatacagcca ttagaaaaac tgcctatcga ttgtgcgcta cccggcacag gttgggttat
    23161 tttttgccac ggcgtcgctg ccaagctagc gctactggca agcagagcca gcagcgcaat
    23221 cgcggttttg ttcatttttt accagcgtgg aatatcagtc ttcacatcgg cattttgcgc
    23281 ccgctgccgt aacaggtgat ccattaaaac gatcgccagc atcgcttcag cgatcggcac
    23341 tgcacggatc ccgacacagg gatcgtgacg acctttggtg atcatctcaa cttcttcgcc
    23401 aaagcggtta atagtgcgcc ccggcacggt aatgctggag gtcggtttca gcgccatatg
    23461 agcaatgatt tgctgcccgc tgctgatacc gccgagaatg ccgcccgcat ggttgctctg
    23521 gaaaccgtct ttggtgattt cgtcgcggtt ctggctgccg cgcagcgcca ctacgtcaaa
    23581 gccgtcgcca atttccacgc ctttcaccgc gttgatgctc atcagcgcat gggcgatgtc
    23641 ggcatccagg cggtcaaata ccggctcgcc aagtccggcg gggacgccac tggcaacaac
    23701 ggtgactttc gcgccgatgg agtcgccctc ttttttcagc gcgcgcatca gttcatctaa
    23761 cgcgtcgatt ttgtccggat ccgggcagaa gaacggattt tgttcaacca gcgaccagtc
    23821 tttgatttcc agcggaatgt cgcccatctg ggtcaagcag ccgcggattt caataccaaa
    23881 tttctcggcg agatattttt tggcaatcgc ccctgccgcc acgcgcatgg cggtttcgcg
    23941 ggcggaagaa cgtccaccgc cgcgataatc gcgcagaccg tatttttgtt cgtaggtgta
    24001 atcagcatgg cctgggcgga aaacgtcttt aattgcgctg taatcctgag agcgctggtc
    24061 agtgttttcg atcaacaagc caatgctggt gccagtagta acgccttcaa aaacaccaga
    24121 gagaattttg acctgatccg gctcgcggcg ctgggtggta tagcgcgatg tcccagggcg
    24181 acgacggtcg aggtcatgtt gcaggtccgc ttccgtcagc agaatgcctg gcggaacacc
    24241 atcgacgatg cagccgagcg ccagcccatg cgattcgccg aaggtggtta cgcgaaagag
    24301 ttgtccaatt gtgtttccag ccatcacggc tccgttattg ttgtgtttgc gtgtttactt
    24361 aatctttata aatcgcgaaa tattcacggg ccgccagcag ctgctctttg gtgagcataa
    24421 acacaccatc gccgccgtta tcaaactcca gccaggtgaa cggaacatcc ggatattgtt
    24481 ccataagatg taccatgctg ttgccgactt cacaaatcaa cacgccatca tcagcaaggt
    24541 aatctgccgc gtttccaaga atgcgacgcg tcagtttaag gccgtcggtg ccagatgcca
    24601 ggcccagttc cggctcgtga cggtattcgt ttggcaggtc ggacatatct tccgcgtcga
    24661 catacggcgg gttagtgaca atcagatcgt actgcacttt cggcaagtcg cggaacagat
    24721 cggaacgaat cggaatgacg ttgtggatca gaccgtgttc ttcgatgttc tgttcagcaa
    24781 ccgccagcgc gtcgggagag atatccaccg cgtcgacttc tgcatccggg aaggcataag
    24841 cacaggcaat ggcgatgcag ccgctaccgg tacacatatc taaaatatgc tgcggttgtt
    24901 tgctgatgag tccggcaaat ttattgttga tcagttcacc aatcggcgag cgcggcacca
    24961 gcacgcgttc atcgacgtaa aattcatgac cgcagaacca ggctttgttg gtcaggtaag
    25021 ccaccggaat gcgctcgttg acgcggcgga tcacgcgttc aacaatacga tgtttttcgc
    25081 tggaggtcag acgcgcggtg cgcatatctt ccgggatatc cagcggcagg tagagcgatg
    25141 gtaacaccag ctgtacggct tcatcccacg ggttatcggt gccgtgaccg taccagatat
    25201 ttgccgcgct gaagcggctc actgaccagc gcaacatgtc ctgaatggtt tgcagctcat
    25261 ttactgcttc atcaacgaaa attttatcca cgtattcctc cagggcatga tcgcaataat
    25321 ttcggcggct agtttgccat gaagatgacg ataaatcagc attcacgcgc ggtgagtgag
    25381 gaaaaatacg tttaaaacga tcgattgtgc tacgagtcgg gtaaactgta ggaaaattag
    25441 aaatagagac agataaatga aaaagaaaac aacacttagc gaggaggacc aggctctgtt
    25501 tcgccagttg atggcgggga ctcgcaagat taagcaggac acgattgtcc accgaccgca
    25561 gcgtaaaaaa atcagcgaag tgccggtgaa acgcttgatc caggagcagg ctgatgccag
    25621 ccattatttc tccgatgagt ttcagccgtt attaaatacc gaaggtccgg tgaaatatgt
    25681 tcgcccggat gtcagccatt tcgaggcgaa gaaactgcgc cgcggcgatt attcaccgga
    25741 attgtttttg gatttacacg gtctgacgca gctgcaggcc aagcaggaac tgggcgcgtt
    25801 gattgccgcc tgtcgccgcg aacatgtgtt ttgtgcctgc gtgatgcatg ggcacgggaa
    25861 gtatattttg aagcaacaaa caccgctgtg gctggcacaa catccgcatg tgatggcatt
    25921 tcaccaggca ccgaaagagt acggcggtga tgcggctttg ttggtgttga ttgaagtgga
    25981 agagtggttg ccgccggagt tgccctgagg agttgagcgt gttgtgccag gagcgcggaa
    26041 tggcaggggc gaatgaccct gccaggtgag aaaaggtgcg ctaatacata ttcagtatgt
    26101 aagtgaatcg gcaggtagaa tctatgggct gtcgagatgt cgtgtccacg cgtagcttca
    26161 tatcatgcag ttgcctggac gtaatcggtt gcggctcagg cgtcaccgtc actttggcat
    26221 tatcacagcc ggaagtcgag aaggtcatct gctgtgcgat aaaacggcag tagacaccac
    26281 gctcatcaaa attattcccg ttacacagtt tgccattttc catcaggaaa gtgggcagtg
    26341 tttgctcaat aacaccacct gttgactgca acctgacgac tttgttatgt acaacataat
    26401 tttcattcca ggaaacatca tacggtgcca ggggcaccgc cggacatgaa gaactcacct
    26461 tcgttgggcc aatatagtca ggaaaatcat catcatacgt tttagcgaag ggatctctac
    26521 tcttaacaaa cgacgacaca atccacggac aaccatgtaa attcccatcg taataaacaa
    26581 acatctttaa ttcattacat gtccatcccg ttttggtctg gctatcatac tgctctaatc
    26641 caggacaggc tgacatggat accctgctgt ccgaaatttt cgacatagat ggttgagtag
    26701 aactatcgcc agtccacgaa actaaatccg gctgtgaatt gggcatgaat gtagccttaa
    26761 atatagcgta attaactgaa tctggcgtcg ctataatcag atgaaactca aactc
//
LOCUS       DAJVSY010000043        25806 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.043, whole genome shotgun sequence.
ACCESSION   DAJVSY010000043 DAJVSY010000000
VERSION     DAJVSY010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25806)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25806)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25806
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.043"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(82..2301)
                     /locus_tag="OQQ19_001623"
     CDS             complement(82..2301)
                     /locus_tag="OQQ19_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgiQ family radical SAM protein"
                     /protein_id="HCS1803287.1"
                     /translation="MSSISLIQPDRDLFSWPQYWAACFGPAPFLPMSSEEMDQLGWDS
                     CDIILVTGDAYVDHPSFGMAICGRMLEAQGFRVGIIAQPDWSSKDDFMRLGKPNLFFG
                     VTAGNMDSMINRYTADRRLRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILG
                     GIEASLRRTAHYDYWSDTVRRSVLVDSKADMLMFGNGERPLVEVAHRLAMGEPISEIR
                     DVRNTAIIVKEALPGWSGVDSTRLDTPGKIDPIPHPYGEDLPCADNKPVAPKKQEAKA
                     VTVQPPRPKPWEKTYVLLPSFEKVKGDKVLYAHASRILHHETNPGCARALMQKHGDRY
                     VWINPPAIPLSTEEMDSVFALPYKRVLHPAYGNVRIPAYEMIRFSVNIMRGCFGGCSF
                     CSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANMYMLRCKSPRAE
                     QTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYDIAVEDPRYI
                     KELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGKEQYLIPY
                     FISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKKPLAKIGYK
                     SEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLVPAPTIE
                     EMREARRQNRNTRPALTKHTPMATQRQTPATAKKASSTQSRPVNAGAKKRPKAAVGR"
     gene            complement(2412..3824)
                     /gene="ftsP"
                     /locus_tag="OQQ19_001624"
     CDS             complement(2412..3824)
                     /gene="ftsP"
                     /locus_tag="OQQ19_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsP"
                     /protein_id="HCS1803288.1"
                     /translation="MSLSRRQFIQASGIALCAGAVPLKASAAGQQQPLPVPPLLESRR
                     GQPLFMTVQRAHWSFTPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMT
                     VAGLQVPGPLMGGPARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGM
                     WLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQ
                     SPYVEVSRGWVRLRLLNASNSRRYQLQMSDSRPLHVISGDQGFLPAPVSVKQLSLAPG
                     ERREILVDMSNGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTD
                     SLPMRLLPTEIMAGSPIRSRDISLGDDPGINGQLWDVNRIDVTAQQGTWERWTVRADE
                     PQAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWVDGQVELLVYFGQPSWAHFPFYFNS
                     QTLEMADRGSIGQLLVNPVP"
     gene            complement(3899..4636)
                     /gene="plsC"
                     /locus_tag="OQQ19_001625"
                     /gene_synonym="parF"
     CDS             complement(3899..4636)
                     /gene="plsC"
                     /locus_tag="OQQ19_001625"
                     /gene_synonym="parF"
                     /EC_number="2.3.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acylglycerol-3-phosphate O-acyltransferase"
                     /protein_id="HCS1803289.1"
                     /translation="MLYIFRLIITVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGR
                     LAPLFGLKVECRKPADAESYGNAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWIP
                     FFGQLYWLTGNLLIDRNNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGRGLLPFK
                     TGAFHAAIAAGVPIIPVCVSTTSNKINLNRLHNGLVIVEMLPPIDVSQYGKDQVRELA
                     AHCRSIMEQKIAELDKEVAEREAAGKV"
     gene            complement(4869..7127)
                     /gene="parC"
                     /locus_tag="OQQ19_001626"
     CDS             complement(4869..7127)
                     /gene="parC"
                     /locus_tag="OQQ19_001626"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HCS1803290.1"
                     /translation="MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRR
                     IVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG
                     QGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPAR
                     LPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTE
                     AEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRN
                     KKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL
                     DGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEI
                     IRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI
                     LVSERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG
                     WVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ
                     GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL
                     PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARG
                     EDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID
                     SPRRASSGDSEE"
     gene            complement(7673..8155)
                     /locus_tag="OQQ19_001627"
     CDS             complement(7673..8155)
                     /locus_tag="OQQ19_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GyrI-like domain-containing protein"
                     /protein_id="HCS1803291.1"
                     /translation="MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKET
                     GLSPVNQSQTFGVAWDDPATTAPKAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVA
                     RHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGMTEQRLETDVYVPLA
                     "
     gene            complement(8208..8600)
                     /gene="ygiW"
                     /locus_tag="OQQ19_001628"
     CDS             complement(8208..8600)
                     /gene="ygiW"
                     /locus_tag="OQQ19_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OB fold stress tolerance protein YgiW"
                     /protein_id="HCS1803292.1"
                     /translation="MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNG
                     SVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPK
                     DTVEIQGEVDKDWNSVEIDVKQIRKVNP"
     gene            8752..9411
                     /gene="qseB"
                     /locus_tag="OQQ19_001629"
     CDS             8752..9411
                     /gene="qseB"
                     /locus_tag="OQQ19_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator QseB"
                     /protein_id="HCS1803293.1"
                     /translation="MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP
                     YDAVILDLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKP
                     FALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLASEPLTLKPKEFALLEL
                     LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE
                     K"
     gene            9408..10757
                     /gene="qseC"
                     /locus_tag="OQQ19_001630"
     CDS             9408..10757
                     /gene="qseC"
                     /locus_tag="OQQ19_001630"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     QseC"
                     /protein_id="HCS1803294.1"
                     /translation="MKFTQRLSLRVRLTLIFLILASVTWLLSSFVAWKQTTDNVDELF
                     DTQLMLFAKRLSTLDLNEINAADRMAQTPNKLKHGHVDDDALTFAIFTHDGRMVLNDS
                     DNGEDIPYSYQREGFADGQLVGEDDPWRFVWMTSPDGKYRIVVGQEWEYREDMALAIV
                     AGQLIPWLVALPIMLIIMMVLLGRELAPLNKLALALRMRDPDSEKPLNATGVPSEVRP
                     LVESLNQLFARTHAMMVRERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKAL
                     LQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKID
                     VRLTLNVQGIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNADNFIVRDNGPGV
                     TPEALARIGERFYRPSGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSW"
     gene            10867..11448
                     /gene="mdaB"
                     /locus_tag="OQQ19_001631"
     CDS             10867..11448
                     /gene="mdaB"
                     /locus_tag="OQQ19_001631"
                     /EC_number="1.6.5.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH:quinone oxidoreductase MdaB"
                     /protein_id="HCS1803295.1"
                     /translation="MSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRA
                     DSDYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRK
                     DPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGM
                     EPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG"
     gene            11479..11793
                     /locus_tag="OQQ19_001632"
     CDS             11479..11793
                     /locus_tag="OQQ19_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HCS1803296.1"
                     /translation="MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMV
                     DCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVLEMNIRILQP
                     GI"
     gene            complement(11841..13733)
                     /gene="parE"
                     /locus_tag="OQQ19_001633"
     CDS             complement(11841..13733)
                     /gene="parE"
                     /locus_tag="OQQ19_001633"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HCS1803297.1"
                     /translation="MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSV
                     DEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN
                     KNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRN
                     TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDG
                     LNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG
                     GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK
                     ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLT
                     SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV
                     SSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVK
                     HFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGL
                     GEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD
                     MAEIEV"
     gene            complement(13762..14343)
                     /gene="yqiA"
                     /locus_tag="OQQ19_001634"
     CDS             complement(13762..14343)
                     /gene="yqiA"
                     /locus_tag="OQQ19_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase YqiA"
                     /protein_id="HCS1803298.1"
                     /translation="MSTLLYLHGFNSSPRSAKASLLKNWLAEHHPDVEMIIPQLPPYP
                     SDAAELLESIVLEHGGDSLGIVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDY
                     LGQNENPYTGQQYVLESRHIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYA
                     SCRQTVIEGGNHAFTGFEDYFNPIVDFLGLHHL"
     gene            complement(14343..15170)
                     /gene="cpdA"
                     /locus_tag="OQQ19_001635"
     CDS             complement(14343..15170)
                     /gene="cpdA"
                     /locus_tag="OQQ19_001635"
                     /EC_number="3.1.4.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-AMP phosphodiesterase"
                     /protein_id="HCS1803299.1"
                     /translation="MESLLTLPLAGEARVRILQITDTHLFAQKHEALLGVNTWESYQA
                     VLEAIRPHQHEFDLIVATGDLAQDQSSAAYQHFAEGIASFRAPCVWLPGNHDFQPAMY
                     SALQDAGISPAKRVFIGEQWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERHTL
                     LLLHHHPLPAGCSWLDQHSLRNAGELDTVLAKFPHVKYLLCGHIHQELDLDWNGRRLL
                     ATPSTCVQFKPHCSNFTLDTIAPGWRTLELHADGTLTTEVHRLADTRFQPDTASEGY"
     gene            complement(15195..15617)
                     /locus_tag="OQQ19_001636"
     CDS             complement(15195..15617)
                     /locus_tag="OQQ19_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1249 family protein"
                     /protein_id="HCS1803300.1"
                     /translation="MKRYTPDFPEMMRLCEMNFSQLRRLLPRNDAPGETVSYQVANAQ
                     YRLTTVESTRYTTLVTIEQTAPAISYWSLPSMTVRLYHDAMVAEVCSSQQIFRFKARY
                     DYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPVY"
     gene            complement(15618..16247)
                     /gene="nudF"
                     /locus_tag="OQQ19_001637"
     CDS             complement(15618..16247)
                     /gene="nudF"
                     /locus_tag="OQQ19_001637"
                     /EC_number="3.6.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribose diphosphatase"
                     /protein_id="HCS1803301.1"
                     /translation="MLKPDNLPVTFGKNDVEIIARETLYRGFFSLDLYRFRHSLFNGQ
                     MSHEVRREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEG
                     ESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLA
                     DENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQLHHQALKNEWA"
     gene            16452..17933
                     /gene="tolC"
                     /locus_tag="OQQ19_001638"
     CDS             16452..17933
                     /gene="tolC"
                     /locus_tag="OQQ19_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417507.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane channel protein TolC"
                     /protein_id="HCS1803302.1"
                     /translation="MKKLLPILIGLSLSGFSSLSQAENLMQVYQQARLSNPELRKSAA
                     DRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINSNATSASLQLTQSIFDMSK
                     WRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLD
                     QTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNNLDNAVEQLRQITGNYYPELAAL
                     NVENFKTDKPQPVNALLKEAEKRNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTAST
                     GISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGA
                     SEQLESAHRSIVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIV
                     DVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLNEQDLLALNNALSKPVSTNPE
                     NVAPQTPEQNAIADGYAPDSPAPVVQQTSARTTTSNGHNPFRN"
     gene            18081..18752
                     /locus_tag="OQQ19_001639"
     CDS             18081..18752
                     /locus_tag="OQQ19_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417509.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1190 family protein"
                     /protein_id="HCS1803303.1"
                     /translation="MKRTKSIRHASFRKNWSARHLTPVALAVATVFMLASCEKSDETV
                     SLYQNADDCSAANPGKSAECTTAYNNALKEAERTAPKYATREDCVAEFGEGQCQQAPA
                     QAGMAPENQAQAQQSSGSFWMPLMAGYMMGRLMGGGAGFAQQPLFSSKNPASPAYGKY
                     TDATGKNYGAAQPGRTMTVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSATGTSS
                     RSMGG"
     gene            18758..19918
                     /locus_tag="OQQ19_001640"
     CDS             18758..19918
                     /locus_tag="OQQ19_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HCS1803304.1"
                     /translation="MERVSITERPDWREKAHEYGFNFHTMYGEPYWCEDAYYKLPLAQ
                     VEKLEEVTAELHQMCLKVVEKVIASDELMTKFRIPKHTWSFVRQSWLTHQPSLYSRLD
                     LAWDGTGEPKLLENNADTPTSLYEAAFFQWIWLEDQLNAGNLPEGSDQFNSLQEKLID
                     RFVELREQYGFQLLHLTCCRDTVEDRGTIQYLQDCATEAEIATEFLYIDDIGLGEKSQ
                     FTDLQDQVISNLFKLYPWEFMLREMFSTKLEDAGVRWLEPAWKSIISNKALLPLLWEM
                     FPNHPNLLPAYFAEDDHPQMEKYVVKPIFSREGANVSIIENGKTIEAAEGPYGEEGMI
                     VQQFHPLPKFGDSYMLIGSWLVNDQPAGIGIREDRALITQDMSRFYPHIFVE"
     gene            complement(19956..20744)
                     /gene="ygiD"
                     /locus_tag="OQQ19_001641"
     CDS             complement(19956..20744)
                     /gene="ygiD"
                     /locus_tag="OQQ19_001641"
                     /EC_number="1.13.11.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001356237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,5-DOPA dioxygenase extradiol"
                     /protein_id="HCS1803305.1"
                     /translation="MSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVV
                     VSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPVLAQHLVELLAPVPVT
                     LDKEARGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIML
                     VASGNVVHNLRTVKWHGDSSPYPWAMSFNEYVKANLTWQGAVEQHPLVNYLDHEGGAL
                     SNPTPEHYLPLLYVLGAWDGQEPITIPVDGIEMGSLSMLSVQIG"
     gene            20887..21648
                     /gene="zupT"
                     /locus_tag="OQQ19_001642"
     CDS             20887..21648
                     /gene="zupT"
                     /locus_tag="OQQ19_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HCS1803306.1"
                     /translation="MSVPLILTILAGAATFIGAFLGVLGQKPSNRLLAFSLGFAAGIM
                     LLISLMEMLPAALAAEGISPVLGYGMFIFGLLGYFGLDRMLPHAHPQDLMQKSVQPLP
                     KSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPV
                     YAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAVAGIMVALSVDELMP
                     LAKEIDPNNNPSYGVLCGMSVMGFSLVLLQTAGIG"
     gene            complement(21706..21876)
                     /locus_tag="OQQ19_001643"
     CDS             complement(21706..21876)
                     /locus_tag="OQQ19_001643"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803307.1"
                     /translation="MFIAWYWIVLIALVVVGYFLHLKRYCRAFRQDRDALLEARNKYL
                     NSTREETAEKVE"
     gene            complement(22136..22789)
                     /gene="ribB"
                     /locus_tag="OQQ19_001644"
     CDS             complement(22136..22789)
                     /gene="ribB"
                     /locus_tag="OQQ19_001644"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HCS1803308.1"
                     /translation="MNQTLLSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMI
                     FPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAA
                     EGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDL
                     MTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHERKAS"
     regulatory      complement(22893..23041)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            23163..23453
                     /gene="ubiK"
                     /locus_tag="OQQ19_001645"
     CDS             23163..23453
                     /gene="ubiK"
                     /locus_tag="OQQ19_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis accessory factor UbiK"
                     /protein_id="HCS1803309.1"
                     /translation="MIDPKKIEQIARQVHESMPKGIREFGEDVEKKIRQTLQAQLTRL
                     DLVSREEFDVQTQVLLRTREKLALLEQRMSELENRSTEIKKQPDPETLPPTL"
     gene            23737..24288
                     /locus_tag="OQQ19_001646"
     CDS             23737..24288
                     /locus_tag="OQQ19_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial-like protein"
                     /protein_id="HCS1803310.1"
                     /translation="MSAFKKSLLVAGVAMILSNNVFADEGHGIVKFKGEVISAPCSIK
                     PGDEDLTVNLGEVADTVLKSDQKSLAEPFTIHLQDCMLSQGGTTYSKAKVTFTTANTM
                     TGQTDLLKNTKETEIGGATGVGVRILNSQSGEVTLGTPVVITFNNTNSYQELNFKVRM
                     ESPGKDATPGNVYAQTDYKIAYE"
     gene            24348..>25806
                     /locus_tag="OQQ19_001647"
     CDS             24348..>25806
                     /locus_tag="OQQ19_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001480735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
                     /protein_id="HCS1803311.1"
                     /translation="MYKKLKLTTISELIKNIYCSLSVLIIGCASAYAVEFNKDLIEAE
                     DRENVNLSQFETDGQLPVGKYSLNAIINNKRTPIHLDLQWVLIDNQTAVCLTPEQLTL
                     LGFTDEIIEEAQQNLIDGCYPIEKEKQITTYLDKGKMQLSISAPQAWLKYKDANWTPP
                     ELWDHGIAGAFLDYNLYASHYAPHQGDNSQNISSYGQAGVNLGAWRLRTDYQYDQSFN
                     NGKSQANNLDFPRIYLFRPIPAINAKLTIGQYDTESSIFDSFHFSGVSLKSDENMLPP
                     DLRGYAPQITGVAQTNAKVTVSQNNRIIYQENVPPGPFAITNLFNTLQGQLDVKVEEE
                     DGQVTQWQVASNSIPYLTRKGQIRYTTAMGKPTSVGGDSLQQPFFWTGEFSWGWLNNV
                     SLHGGSVLTNRDYQSLAAGVGFNLNSLGSLSFDVTRSDTQLHNQDKETGYSYRANYSK
                     RFESTGSQLTFAGYRFSDKNFVTMNEYINDTNHYTN"
BASE COUNT         6460 a         6801 c         6371 g         6174 t
ORIGIN      
        1 tcggcatata aataaatgcc taatgagata gattctgatg taatatcccc ggtagcaatt
       61 ctgctaccgg gaacagcgaa tttaacgtcc aaccgccgct ttaggccgtt tcttcgcacc
      121 agcattcacc ggacgagatt gcgtagacga cgcttttttt gccgtagcag gcgtctgacg
      181 ctgggtcgcc atcggcgtat gtttcgtcaa cgccggacgg gtattgcggt tctggcgacg
      241 agcttcacgc atctcttcaa tggttggcgc aggcactaag caatcgcgac ggctaccaat
      301 cagatgcttt ttacccatcg cttccagcgc ctggcggatt aacggccagt ttgccggatc
      361 gtggtaacgc aacaacgctt tatgcaaacg acgctgcttg tcgcccttcg gtacgaagac
      421 gtcttcactc ttataaccaa tcttcgccag cggttttttc ccggtgtaat acatggtggt
      481 tgagttcgcc agcggcgatg ggtagaagtt ctgtacctgg tcgagacgga aacgatgctt
      541 tttcagccac agcgccagat tcaccatatc ttcatcacgc gtaccggggt gcgcggagat
      601 gaaatagggg atcagatact gctctttacc tgcctgtttt gagtaagtat cgaacagctc
      661 tttaaagcgg tcatagctgc ccatgcccgg cttcatcatc ttcgataacg gcccttcttc
      721 ggtatgttcc ggggcaatct tcagataacc gccgacgtga tgggtcgcca gttctttgat
      781 atagcgcgga tcttccacgg cgatgtcata acgcacacca gaggcaatca ggatcttttt
      841 aatgcctttc agatcacgcg cacggcgata gaggttgatc gttggttcgt ggttcgtgtc
      901 catgtgcgga caaatatccg gataaacgca cgacaaacgg cggcaggttt gctcagcgcg
      961 tggcgatttg cagcgcaaca tatacatgtt ggcagttggc ccaccgagat cggaaattac
     1021 gcccgtaaaa cctggaacgg tgtcgcggat cgcttcgatc tcattaatga tcgaatcttc
     1081 ggaacggctc tgaataatgc gcccttcgtg ctcggtgata gaacagaaag agcagccgcc
     1141 aaagcagcca cgcataatgt tgaccgaaaa acggatcatt tcgtaagccg gaatacggac
     1201 attgccatag gccggatgta gcacgcgctt gtatggcagc gcaaaaacgc tgtccatctc
     1261 ttcggtagaa agcggaatag caggcgggtt gatccacaca tagcggtcgc cgtgtttttg
     1321 catcaatgcg cgggcacagc ctgggttggt ttcgtggtgc agaatacgcg aagcatgggc
     1381 gtacagcact ttatcgccct tcactttctc gaaagaaggc agcaacacgt aggttttttc
     1441 ccacggtttc gggcgcggtg gctgcacggt tacggctttg gcttcctgct ttttcggtgc
     1501 caccggtttg ttatccgcgc acggcaaatc ttcaccatac ggatgcggga ttgggtcgat
     1561 ttttccaggg gtatcaagac gggtggaatc cacgccgctc cagccaggca gggcctcttt
     1621 cacgataatc gcggtattac gcacatcgcg gatttcacta atcggctcgc ccatcgccag
     1681 acggtgcgcc acctccacca gcggacgctc accgttacca aacatcagca tgtcggcttt
     1741 cgaatccacc agcacggaac ggcgcacggt atcggaccag taatcataat gtgcggtacg
     1801 acgcagacta gcctcaatac cgccgaggat caccggtaca tctttccacg cctctttaca
     1861 acgctgggta taaaccagtg tggcgcgatc cgggcgctta cccgcgacgt tatccggcgt
     1921 gtaggcatcg tcatgacgta aacggcgatc ggcggtataa cggttgatca tcgaatccat
     1981 gttgccagca gtaacaccga aaaacagatt cggtttaccc agacgcataa agtcgtcttt
     2041 gctgctccag tccggctggg cgatgatccc gacgcgaaag ccctgcgctt ccagcatacg
     2101 accgcaaatc gccatcccga agcttgggtg atcgacatac gcgtcgccag taaccaaaat
     2161 gatgtcgcag ctatcccagc caagttgatc catctcttca ctagacatcg gcaaaaacgg
     2221 tgccggtcca aaacaggcgg cccagtactg cggccaggag aacaggtcgc gatccggttg
     2281 gatcagggag atagagctca ttttgcttcc agaaatgata aaaaaataat caaaggccgg
     2341 ggattataag ccggaacgaa agagaaatcg aaaagtattc catactcgcc ctcctcgggc
     2401 gagtatgaag attacggtac cggattgact aacagttgcc caatcgagcc acggtccgcc
     2461 atttccagcg tctgactgtt gaagtagaac gggaagtgcg cccaggaagg ctgaccgaaa
     2521 taaacaagca gctccacttg tccgtcaacc caaacggtat ctttccagcc tctgtcttcc
     2581 gggaacggca tcgcaccatt cacgttacgg atctggaaca tcacgccttc aatatggaac
     2641 gcttgcggct cgtccgcgcg taccgtccag cgttcccacg ttccttgctg cgcggtgaca
     2701 tcaatacggt tgacgtccca cagttgtcca ttaatacccg ggtcatcacc cagactgata
     2761 tcgcgactgc gaatcggcga accggccatg atttcagttg gcagcaagcg catcggaaga
     2821 ctgtctgtga ccagcggcag aaggccggtt gggcgcagcg ttagcaccag ggtagaaacc
     2881 agaatgctgg atggctcaaa gaagccacga atacgatcaa caatgctcgc cgcttcgcca
     2941 caggtgatcg acacttcatc accgttgctc atatccacca gaatctcgcg gcgctcgccc
     3001 ggtgccaacg aaagttgctt caccgataca ggagcaggca ggaatccctg atcgccagaa
     3061 atcacatgta acgggcgact atcgctcatc tgtagttgat agcgacgaga gttcgacgcg
     3121 ttcagcagtc gcaagcgcac ccagccacgc gagacttcaa cgtacgggct ttgtacaccg
     3181 ttaaccagca gcgtatcacc aacaaagccg ccgcttcccg gttcgttgta ttctggcgta
     3241 ccaaagttat ccagccgttt atcctggata atgaccggaa aatcatccac accataatgg
     3301 ttggggatag gcagcgactt gctgacttca tcttccacca gccacattcc ggcaaggccg
     3361 ttatagacct gctgagccgt gcggttggga gtattggcgt gataccacag agtagctgcg
     3421 ttctggcgaa tgggcagtac gggtgcccag tcagcgtttg gcgacatcat ccgtgccgga
     3481 ccgcccatca gcgggcctgg tacctgtagc ccggccaccg tcattgagac attttctgtc
     3541 aggcggttgc tgtaaataag cttaacatcg tcgcccttcc agacgcggat agtcggcccc
     3601 aggtaacgac cattgattcc ccagaccgac gcgcgtgtcc ctggcgtaaa tgaccagtgc
     3661 gcacgttgta cagtcataaa cagcggttgc ccacggcgag attcaagtag cggcggaacg
     3721 ggtagcggtt gctgttgccc ggctgcgctg gccttcaggg gaacagcgcc ggcacaaagt
     3781 gcaatccccg atgcctgaat gaactgacgc cgactgagtg acatatttgc tccatgtaaa
     3841 actggctaaa gtaataccgt gcaggaaagt gttccccgca aaaatacaga ttgccgactt
     3901 aaacttttcc ggcggcttcg cgttctgcga cttctttatc gagctcggcg attttttgtt
     3961 ccattatcga acgacaatgg gcagccagct cacgaacctg atctttgcca tactgactga
     4021 cgtcaattgg cggcagcatt tcgacaatca ccagaccgtt gtgcagtcga ttaagattaa
     4081 tcttattcga agttgtagag acgcacacgg gaataatcgg gacgcccgcc gcaattgccg
     4141 cgtgaaatgc tccagtcttg aacggtagca ggccgcgacc acggctgcgg gttccttccg
     4201 ggaacatcca gatggaaata cggcgttttt tgaaatgatt cacgacttcc gcaatggtgc
     4261 cgtgagcttt agtgcgattg tttctgtcga tcaataagtt gccggttaac cagtacaact
     4321 gcccgaagaa ggggatccac agcaagctct ttttacctac cgtcaccgtc ggcggttgca
     4381 caatgttcga tgctgtcacc atgtcatagt tgttctggtg gttagcgata tagatagcat
     4441 tgccgtagct ttcagcatct gcaggtttgc ggcactcaac tttcaggccg aacagcggcg
     4501 caagacggcc aaacatatgc ccaaaggtgg ccacatgttt cgggttacgc gggctgaaaa
     4561 ggcagtaaat ggagccgaat acacagacta agatgctgta aatcacggta ataataagac
     4621 gaaagatata tagcataaca acctctgaag gtctgagaga ctggcattgt acgtcacctg
     4681 aaatcaggtt agggcattgt taaaagccgc tctctggaaa agcgtattgt taatcgcaac
     4741 gcatgaataa acaacggttt caagggaatt tttatcgttt ccgggggttg aatacgctgc
     4801 cggatgacga cttaacgttt catccggcgt tccttgcaag cgggaggaaa caggccctcc
     4861 ccggcatatt actcttcgct atcaccgctg ctggcacggc gaggagagtc gatctcaaca
     4921 cgatcgatac gctgcaaacc gcgcatcaac gtaccgcggc gtccacgttc gccagtgact
     4981 ttctgtaact cttccgggcg cagtttaatt ttgcgtttcc caacatgaat ggtcagcgtg
     5041 ctttgcggcg gcagaacgta caattgcgcc agaccatctt ctccacgcgc ggcttctgcc
     5101 gatggaatgt tgataatctt gttgcctttg cccttcgaca gctgcggcag atcgcttacc
     5161 gggaacatca acatacggcc tgcctgagtg attgccagca gcatatcgga agcatcttca
     5221 atcaccaccg gcggcataac atgggcattt tccggtaagg tgatcaaagc cttacctgca
     5281 cggttacgcg ccaccagatc gttaaaggtg cagacgaaac cgtaacccgc atcggaagcc
     5341 atcagcagtt tctgatcgtc gctttccatc agcatatggt caacggtcgc cccaggcggc
     5401 aacgttaatt tgccggtgag tggttcgccc tgaccacgcg ccgacggcag cgtaatcggg
     5461 tcgatggcat agctacgacc ggtggaatca acaaacacta ccggttggtt gctcttacct
     5521 ttcaccgccg ctttgaagct atcacccgct ttataattca ggcccggcgc gtcgatatca
     5581 tggcctttag cgctgcgtac ccagcccatc tgcgacagca caatggtgac aggttcagac
     5641 ggcagcatgt cgtgctcgct catcgctttc gcttcttcgc gttcctgcaa cggcgaacga
     5701 cgatcgtcac cgtaggcttg cgcgtctgcc tgcagttctt tcttcagcag gttattcatt
     5761 ttacgctcgg aaaccaaaat gccctgcaac tggtcgcgct ctttttccag ctcactctgc
     5821 tcaccgcgaa tcttcatctc ttccagtttg gcaagatgac gcagtttcag ttcgaggatc
     5881 gcttccgcct gggtttccgt aaggccaaac cgcgacatca gcgccggttt cggttcatct
     5941 tcgttacgaa tgatctcaat cacttcgtcg atgttgagaa acgccaccag caaaccttcc
     6001 aggatatgca ggcgcttgag gactttctcc agacgatagt tcagtcggcg gcgcacggta
     6061 tcgcgacgga acaccagcca ttcggagagg atttccagca ggtttttcac cgccggacga
     6121 ccatccagac cgatcatatt gaggttaatg cgatagctct tttccagatc ggtggtagcg
     6181 aagaggtggt tcatcacctg atccatatcc acgcggttgg aacgcggcac aatcaccaga
     6241 cgggtcgggt tctcgtggtc agattcatcg cgcagatcgt caaccatcgg cagctttttg
     6301 ttgcgcattt gcgcagcaat ttgctccagt acgcgcgcac ctgaaacctg atgcggcaat
     6361 gcgctgataa ccaccgcgcc atcttctttc ttccacaccg cgcgcatacg cactgaacca
     6421 cgtccgttct cgtagatttt acggatctcg gcgcgcgaag tgataatttc cgcttcagtc
     6481 ggataatccg gcccctgcac gatatccagc agctgatcga gcgtggtttt cggctggtcg
     6541 attaatgcga ttgccgcctg agctacttca cgcaggttat gcggtggaat atcggtcgcc
     6601 atgccgacgg caataccggt ggtgccgtta agcaaaatgt ttggcagacg ggcaggcagc
     6661 attttcggct cctgcaaagt gccgtcgaag tttggcaccc agtcagccgt cccctgcccc
     6721 agctcgctca atagcagctc ggaatatttc gacaaccggg attcggtgta acgcattgcc
     6781 gcgaacgatt tcggatcgtc cggcgcgccc cagttcccct gaccatcaac cagcggataa
     6841 cggtaagaga acggctgcgc catcaggacc atcgcttcat aacaggcgct atcgccgtgc
     6901 ggatggtatt tacccagtac gtcaccgacg gtacgggccg attttttaaa tttggcgctg
     6961 gcattcaggc ccagttcaga catcgcatac acaatgcggc gctgaacagg tttaagacca
     7021 tcgccaataa acggcaacgc acggtccatg atcacgtaca tggagtagtt taagtaggcg
     7081 ttttccgtaa attcatgtag cgcaaggcgc tctgccatat cgctcattaa ttctgattcc
     7141 tcaacttatt cgccagcctt caaaggggca atattgccgg agatactaca ttatctgccg
     7201 cgtcgagtca caggagatca gcgtgaatag cgccgccgga cgtgctccga cggcgataaa
     7261 ggcatcaatg tgccttgata tacaactctt tgctgtagac ttgatcggca tagagggcag
     7321 cacaaggttg cgcccatgcc acaccactcg gcatgggggt ccgctccggg cgattcgaga
     7381 agttgaggtt atgcgagtcc agggaagcct aaagcatcaa agtagtcgac tgtaagtata
     7441 cggttcagcc cagtttagct gtgtctccac cagtgccccg cgcctcctgc cataagtgcg
     7501 gcttgctcat ggataccccc gagacggctt acggcgcacc ggataataaa tttcgcgtat
     7561 acatggtatt ccttaccgga gaaattataa gcccaacaac aatacgcctg tggcattgtt
     7621 cgctcaaact tatcgcgagt gatttggctc acactccggt aaagattccc catcacgcta
     7681 acggcacata aacatccgtt tccagtcgct gttctgtcat accttcggca agattggtgt
     7741 agtgaaacag aatcggtgct ttacgcattt tctcgccgct tgcaggcagc cagtggcgaa
     7801 tgatgcccca taccgtgtgt gaaatatcgt ccagctcgcc aacgtggcgg gccacggcat
     7861 aacgtccacc ggtaagttca ccattgctca caccataacg attatcggga atcggttcgc
     7921 taacgctgcc gcagatatca aagcgaaacg ctttcggtgc ggtggtggca gggtcgtccc
     7981 aggcgacgcc aaaagtctgg ctttggttaa caggagaaag ccccgtctct ttacgccaca
     8041 tgataaattt cgccacactg tagttgagca actcagggct acagcggtgc ggcaacatcg
     8101 ccacagggat tgatgggaaa tcgataatgt ttacatccag tgtcaggttt gtcattttgc
     8161 ctccctgcga aattattccc gggaacgcgt cccgggagcg gtaacaatta cggatttact
     8221 ttgcggatct gtttgacgtc aatttcaaca gaattccagt ctttatcgac ttccccctga
     8281 atctcaaccg tatctttcgg cgtcaccgtc acaccgttcc agcgtttgtg gtcgatatca
     8341 acattgatag taccgctggc atctttaaac acgtagagat cgtcagagat gcgttcaacg
     8401 atattgccgc gcagggttac ccaggtgtcg tcacgcaggg attttgcgct ttctacagtc
     8461 gttacgctgc cgttcggccc ctggaatcct ccggcctgac tttgcgttgc cgatgggcca
     8521 gaaaaaccgc cctgctctgc tgccatcacc ggtgcactgc acagggccat tactgcgatt
     8581 actgctgcga attttttcat gtttattact ccctttaatg tctgtttccg agcatttaac
     8641 aagatagtcc ttaacaactt cttaagggaa aaaaataaaa tttaatgctg tacagagcgc
     8701 gttacaacac ggtttactgg cagcaaatac ggttatcgca gggatgaaaa aatgcgaatt
     8761 ttactgatag aagatgacat gctgattggc gacggcatca aaactggcct tagtaaaatg
     8821 ggttttagtg tcgactggtt tacacaaggt cgtcagggaa aagaggcgct ttatagcgca
     8881 ccttatgatg cggtgatcct ggatttaacc ttaccaggca tggatggtcg cgatattttg
     8941 cgcgaatggc gagagaaagg tcagcgtgag ccggtactga tcctgaccgc gcgtgatgcg
     9001 ttagcggaac gtgtagaagg gctgcgtctg ggagctgacg attatctgtg taaacctttt
     9061 gcgttgatag aagtcgccgc caggctggag gctctgatgc gccgaaccaa cggccaggcc
     9121 agcaacgagc tgcgccacgg taacgtcatg ctcgaccccg gcaaacgtat cgccacgctg
     9181 gctagcgaac ccttaacact gaaaccaaaa gaatttgccc tgctggaatt actgatgcgt
     9241 aacgctggtc gggtactgcc gcgcaaactg attgaagaga aactgtatac ctgggacgaa
     9301 gaggtcacca gtaatgccgt tgaagtgcat gtgcatcatc tgcgacgcaa actcggtagt
     9361 gattttattc gtaccgtgca tggtattggc tacacattag gtgagaaatg aaatttaccc
     9421 aacgtcttag tctgcgcgtc aggctgacgc taatcttttt aattctggcc tcggtgacct
     9481 ggctgctttc cagctttgtc gcctggaaac aaacaacgga taacgtcgat gaattgttcg
     9541 acacccaact gatgctgttt gccaagcggt taagtacgct cgatctcaac gaaatcaacg
     9601 cggcggatcg catggcacag acgccaaata aattaaaaca cggtcatgtt gatgacgatg
     9661 cgctgacctt tgccatcttt acccacgacg gcagaatggt ccttaatgat agcgataacg
     9721 gagaagatat tccctatagc tatcaacggg aaggttttgc tgacgggcaa ctggtcggtg
     9781 aagacgatcc ttggcgtttt gtctggatga cctcacctga tggcaaatat cgcatcgttg
     9841 ttggccagga atgggaatac cgtgaagaca tggcgctggc gattgttgcc gggcaattga
     9901 tcccgtggct ggtcgcactg ccgattatgt taatcatcat gatggtacta ctgggtcgtg
     9961 aactcgcgcc gctgaacaaa ctggcgctgg cactacgtat gcgtgaccct gactcggaaa
    10021 aaccactaaa cgcgactggc gtacccagcg aagtgcgacc actggttgag tcgctaaatc
    10081 aactgttcgc ccgcacacat gcgatgatgg ttcgagaacg acgctttacc tccgatgcag
    10141 ctcacgaact acgtagcccg ttaacagcgc tgaaagtgca aaccgaagtt gcgcagctct
    10201 ctgacgatga tccgcaggca cggaaaaaag cactgctcca attacattcc gggatcgatc
    10261 gcgctactcg tctggttgat caactgctca cgctatcgcg gctggactca ctggataacc
    10321 ttcaggacgt cgcggagatc ccgcttgaag atctcctgca atcgtcggtg atggatattt
    10381 accacacggc gcagcaggcg aaaattgacg tgcgactgac actcaatgtc cagggcatca
    10441 aacgcaccgg acaaccgcta ttgctaagtt tgttggtgcg aaatttgctg gataacgccg
    10501 tgcgttacag tccacagggc agcgtggtgg acgtcacgct gaatgccgat aatttcatcg
    10561 tgagggataa cggccccggt gtgacaccag aggcactggc gcgaattggc gaacgcttct
    10621 atcgcccctc cggacaaacc gctaccggca gtggacttgg gctatcgatt gtccagcgaa
    10681 tcgccaagct gcatggcatg aatgttgagt ttgggaatgc ggaacaaggt ggatttgagg
    10741 cgaaagtaag ctggtaaggg taagactttt gctaaattcg caaaagactt tgcacatttt
    10801 gctaatttca ccgtaccgct ctgtgacgta ctatagtcgg caaacgtctc accttgaggt
    10861 taaaaaatga gcaacattct gattatcaac ggcgcgaaaa aattcgccca ctccaatggt
    10921 caactgaatg acaccctgac cgaagtcgcg gatggcacac tgcgcgacct cgggcatgat
    10981 gttcgcatcg ttcgcgccga cagcgactac gatgtcaaag cggaagtaca aaactttctc
    11041 tgggctgatg tggtgatctg gcagatgcca ggctggtgga tgggcgcgcc gtggacagtg
    11101 aaaaaataca ttgatgatgt attcaccgaa ggtcacggga cgctgtatgc cagcgatggc
    11161 cgtacccgca aagatccgtc aaaaaaatac ggttccggcg gcctggtaca gggcaaaaaa
    11221 tatatgcttt ctctgacctg gaacgcacca atggaagcct tcaccgaaaa agatcaattc
    11281 ttccacggcg ttggcgtcga cggtgtgtat ctgccgttcc ataaagcaaa ccaattcctt
    11341 ggcatggaac cgctgccgac atttatcgct aatgacgtga taaaaatgcc tgatgttccc
    11401 cgctatactg aagaatatcg caagcatctt gtggaaattt ttggttaact agagctcagg
    11461 ctttagaagg agttaaccat gcttaccgta atcgcagaaa tccgtactcg tcctggtcaa
    11521 catcaccgtc aggcggtatt ggatcagttt gctaaaatcg ttccaaccgt actgaaagaa
    11581 gaaggttgcc acggctatgc gccaatggtg gattgcgctg ctggcgtgag tttccagtct
    11641 atggcaccgg attctatcgt gatgattgag cagtgggaaa gcatcgcgca ccttgaagcg
    11701 catctgcaaa ccccgcacat gaaggcgtac agcgaagccg taaaaggtga cgtgctggag
    11761 atgaatattc gtattctgca gccagggatt taatcctgcc ttgtttgccc ggccatcctg
    11821 accgggcaat gttctttcct ttaaacctca atctccgcca tgtcgccttt ctcttgcaac
    11881 cagttgcggc gatcttccga gcgtttcttc gccagtagca tgtccatcat cgcgtcagta
    11941 cgctgatcgt cttcatcatc gatagtcaac tgcaccagac ggcgagtgtt cggatcaagc
    12001 gtggtttcgc gcaattgcat cgggttcatt tcccccagac ctttaaaacg ctggacgttc
    12061 ggcttgcctt tcttgcgttt taattgctca agtacgccct ctttctcttc ttccgtcagc
    12121 gcgtaataaa cctctttccc gagatcaata cggtagagcg gtggcagtgc gacgtaaacg
    12181 tgaccgtgtt tcaccaacgc gcggaagtgt tttacaaaca aagcgcagag cagcgtggca
    12241 atgtgcagac catcggagtc agcatccgcc aggatacaga tcttgccgta acgaagctgg
    12301 ctcaaatcgt cgctgtcagg atcgataccg atcgctaccg aaatatcgtg cacttcctgc
    12361 gaagccagca cttcgtcgga agagacttcc caggtgttaa ggatcttacc tttcagtggc
    12421 atgatcgcct gatattcgcg atcgcgcgcc tgcttggcag atccgcctgc ggagtcacct
    12481 tccacaagaa acagttcggt gcggttaagg tcctgcgcgg tacagtcagc cagtttgcca
    12541 ggcagcgccg gaccgctggt cagcttttta cgcaccactt ttttagccgc acgcatacga
    12601 cgctgggcgc tggaaatcgc catctctgcc agcaactccg ccgcctgaac gttctggttc
    12661 agccacagga taaaggcatc tttcaccacg ccagaaacga atgccgcgca ctgacgcgaa
    12721 gagagacgct ctttggtctg cccggcaaac tgcggatcct gcatttttac tgacagcaca
    12781 taggcgcagc gatcccagat atcttccgcc gacagcttta caccgcgcgg cagaatgttg
    12841 cggtattcac agaactcacg catcgcgtcc agcaggccct gacgcagacc attaacatgg
    12901 gtaccgccct gcatcgttgg gatcaggttg acgtagcttt cggtcagcag ttcaccgcct
    12961 tccggcagcc acagtagcgc ccagtccacc gcttcagtat cgccagcgaa attaccgata
    13021 aacggttttt ctggcagcgt cggtaaaccg tttaccgctt ccgccaggta atcattcaga
    13081 ccgtcctgat agcaccagcg ctgttcggtg ttgttgatct catctttaaa ggtaatctca
    13141 acgccggggc acagtactgc tttggctttc agcacatgcg tcaggcgtga aacagaaaaa
    13201 cgcgggctat cgaagaaggt ttcatccggc cagaaatgga cgctggttcc ggtattgcgt
    13261 ttaccgcaag tgccgacaac ctgtaaatcc tgcacctttt cgccattttc aaaggcgatg
    13321 ttataaatct gaccatcgcg gcgcacgtta acttctacgc gcttcgacag ggcgttaacc
    13381 accgaaatcc ccacgccatg caggccgcca gagaactggt aatttttgtt agagaattta
    13441 ccgcctgcat gcagacggca aagaatcagt tcaaccgccg gtacaccctc ttccgggtga
    13501 atatccaccg gcatcccgcg cccatcgtca ataacttcta acgactggtc agcatgtaaa
    13561 ataacgtcca cgcgttttgc gtgacccgcc agtgcttcat ccacactgtt atcaatgact
    13621 tcttgcccca aatggttagg gcgagtggta tcggtataca tccccggacg gcggcgaacc
    13681 ggctcaagcc cggtgagtac ctcaatggca tcagcgttat aagtttgcgt catggtttaa
    13741 gttagtaatt cgagttgatc gtcagagatg gtgcagacca agaaaatcga cgatcgggtt
    13801 gaaataatct tcgaagcccg tgaatgcgtg gttgccgcct tctatgacag tctggcggca
    13861 ggaagcgtag tacgccaccg cctggcggta atccagcact tcatctcccg tctgttgcag
    13921 cagccagatc aaatccggcg cttccagcgg gtcaatctgc atgactttaa gatcgtaaat
    13981 atggcgtgac tctagcacat attgctgccc ggtgtagggg ttctcgttct gaccgagata
    14041 gtccgtcagc agttcaaacg ggcgcaccgc cgggtttacc accactgcgg gcagcataaa
    14101 acattgtgac aaccaggtgg cgtaatatcc ccccagtgac gaaccgacaa tacccagcga
    14161 atcgccgcca tgttccagga caatggattc cagcagctct gccgcgtcgg aaggatacgg
    14221 cggcaactgc ggaatgatca tctcaacgtc agggtgatgt tccgccagcc agttttttaa
    14281 caagctcgct tttgcagagc gcggcgagct gttgaaaccg tgtaaataaa gaagcgtaga
    14341 catcagtagc cttctgaagc ggtatcaggt tggaaacgtg tgtccgccag gcgatgcacc
    14401 tcggtggtca gcgtgccatc agcatgtaac tcgagagtac gccagccggg cgcgatggta
    14461 tccagcgtaa agttggaaca gtgcggctta aactgcacac aggtcgacgg cgttgccagc
    14521 aggcggcgac cgttccagtc gagatccagc tcctgatgaa tatgaccgca cagcaagtat
    14581 ttgacgtgcg gaaacttcgc cagcacggta tccagttcgc ccgcgttacg cagactgtgt
    14641 tgatcgagcc aactacaacc cgcaggtagc ggatgatgat gcagcagcag caacgtatgg
    14701 cgttctggcg catcggccag tttacgttcc agccactcaa gctgaaactc gctcagctca
    14761 ccgtgcggca cgccaaacac ctggctatcc agcaacagga tttgccattg ctcaccaata
    14821 aacacgcgct tcgccgggga gatacccgca tcctgtaacg cgctgtacat cgcgggctgg
    14881 aaatcgtggt tgcccggcag ccagacgcag ggcgcacgaa aacttgcgat gccttcagcg
    14941 aaatgctgat aggccgcaga ggattgatcc tgcgctaaat cacctgtcgc gacaatcagg
    15001 tcgaattcgt gctgatgtgg acgaatcgcc tccagcaccg cctggtagct ttcccaggtg
    15061 tttaccccta acagggcttc gtgcttttgt gcaaacaggt gagtatcggt aatttgtaaa
    15121 atcctgactc tggcctcacc agccagagga agggttaaca ggctttccaa atggtgtcct
    15181 taggtttcac gacgctagta aaccggaatc gccatcgctc catgtgctaa acagtatcgc
    15241 aaccagtccg ctaaaaactg gttaatttga tgcttttcgt cgcgttgatg caacttttta
    15301 ttaggataat cataccgcgc tttgaagcga aaaatctgct ggcttgaaca cacttcagcc
    15361 accatcgcgt catgatacag acgcaccgtc attgacggaa ggctccagta actgatcgcg
    15421 ggcgcagtct gttctattgt caccagggta gtgtatcggg tcgattccac agtcgtcagc
    15481 cgatattgtg cgtttgccac ctgatagctt acagtttcgc cgggtgcgtc attgcgcggt
    15541 aacaaacggc gcaattgtga aaagttcatc tcgcacaggc gcatcatttc aggaaagtca
    15601 ggtgtgtaac gcttcattta tgcccactca ttttttaacg cttggtggtg cagctgcagc
    15661 cattgcaaag cgatgaccga cgctgcgttg tcgattttcc cctcttctac ccactggtat
    15721 gcctgttccc ggcttaccac atgaacgcga atatcttcgt tttcatcagc cagaccatga
    15781 ataccgcttg cggtcgtggc gtccacttcg cccaccataa ttgacgaacg ctcactggtg
    15841 ccccccgggc ttgccaggaa acttaacacc ggtttggtcc gtttgactat cagccccgcc
    15901 tcttcaatcg cttcgcgacg ggcaacatct tccacacttt caccctcttc aatcatcccg
    15961 gcaaccatct ccagtagcca gggggtttcg ctagtgtcgt acgcggcaat tcgaatctgc
    16021 tcaatcagca caacttcatc acgcactggg tcaaagggta gcaagactgc ggcgtgaccg
    16081 cgctcaaaaa tttcccgccg cacctcatga ctcatttgcc cgttgaatag actatgacga
    16141 aatctataaa gatctaatga aaaaaagccg cgataaagtg tttctcgtgc aataatttct
    16201 acatcgtttt tgccaaatgt aacgggcagg ttgtctggct taagcattgt taatgtcctg
    16261 gcactaatag tgaattaaat gtgaatttca gcgacgtttg actgccgttt gagcagtcat
    16321 gtgttaaatt gaggcacatt aacgccctat ggcacgtaac gccaaccttt tgcggtagcg
    16381 gcttctgcta gaatccgcaa taattttaca gtttgatcgc gctaaatact gcttcaccac
    16441 aaggaatgca aatgaagaaa ttgctcccca ttcttatcgg cctgagcctt tctgggttca
    16501 gttcgttgag ccaggccgag aacctgatgc aagtttatca gcaagcacgc cttagtaacc
    16561 cggaattgcg taagtctgcc gccgatcgtg atgctgcctt tgaaaaaatt aatgaagcgc
    16621 gcagtccatt actgccacag ctaggtttag gtgcagatta cacctatagc aacggctacc
    16681 gcgacgcgaa cggcatcaac tcgaacgcga ccagtgcgtc cctgcagtta actcaatcca
    16741 tttttgatat gtcgaaatgg cgtgcgttaa cgctgcagga aaaagcagca gggattcagg
    16801 acgtcacata tcagaccgat cagcaaacct tgatcctcaa caccgcgacc gcttatttca
    16861 acgtgttgaa tgctattgac gttctttcct atacacaggc acaaaaagaa gcgatctacc
    16921 gtcaattaga tcaaaccacc caacgtttta acgtgggcct ggtagcgatc accgacgtgc
    16981 agaacgcccg cgcgcagtac gataccgtgc tggcgaacga agtgaccgca cgtaataacc
    17041 ttgataacgc ggtagagcag ctgcgccaga tcaccggtaa ctactatccg gaactggcgg
    17101 cgctgaatgt cgaaaacttt aaaaccgaca aaccacagcc ggttaacgcg ctgctgaaag
    17161 aagccgaaaa acgcaacctg tcgctgttac aggcacgctt gagccaggac ctggcgcgcg
    17221 agcaaattcg ccaggcgcag gatggtcact taccgacgct ggatttaacg gcttctaccg
    17281 ggatttctga cacctcttat agcggttcga aaactcgtgg tgccgctggt acccagtatg
    17341 acgacagcaa tatgggccag aacaaagtgg gcctgagctt ctcgctgccg atttatcagg
    17401 gcggaatggt taactcgcag gtgaaacagg cccagtacaa ctttgttggt gccagcgagc
    17461 aactggaaag cgcgcatcgt agcatcgtgc aaaccgtacg ttcctccttc aacaacatta
    17521 atgcatctat cagtagcatt aacgcctaca aacaagccgt agtttccgct caaagctcat
    17581 tagacgcgat ggaagcgggc tactcggtcg gtacgcgtac cattgttgat gtgttggatg
    17641 caaccaccac gctgtacaac gctaagcaag agctggcaaa tgcgcgttat aactacctga
    17701 ttaatcagct gaatattaag tcagccctgg gtacgttgaa cgagcaggat ctgctggcac
    17761 tgaacaatgc gctgagcaaa ccggtttcca ctaatccgga aaacgttgcc ccgcaaacgc
    17821 cggaacagaa tgctattgct gatggttatg cgcctgatag cccggcaccc gtcgttcagc
    17881 aaacatccgc acgcactacc accagtaacg gtcataaccc tttccgtaac tgatgacgac
    17941 gacggggctt cggccccgtc tgaacgtaag acaacgtaaa gatacgggtt atctgccgca
    18001 ttcttccccc ttctcgcttc aatttcgacc agccatcctc tattctgatg ggtatttacc
    18061 actggtcccg gaagacaaaa atgaaacgga caaaatccat acgccacgca tcgttccgca
    18121 aaaactggag cgcacgccat ctgacaccag tcgctctcgc ggttgccact gtttttatgc
    18181 tggctagctg tgaaaagagt gatgaaacag tgtctctcta tcaaaatgct gacgactgtt
    18241 cagctgcaaa cccaggcaaa agcgccgaat gtaccaccgc gtacaacaat gcgctgaaag
    18301 aagccgaacg tactgcgccg aaatacgcca cccgtgaaga ctgtgttgct gaatttggtg
    18361 aaggtcagtg ccagcaggca ccagcccagg ctggcatggc accagaaaac caggcgcagg
    18421 cccagcaatc cagcgggagt ttctggatgc cgctgatggc cggttacatg atggggcgtc
    18481 tgatgggcgg cggcgcggga tttgcacagc agccgctgtt ctcctcgaaa aacccagcca
    18541 gcccggctta cggtaaatat accgacgcga cgggtaaaaa ctatggcgca gcccagccag
    18601 gccgcaccat gaccgtaccg aagacagcca tggcaccaaa accggcgacc actactaccg
    18661 ttacccgtgg cggttttggt gaatctgttg ccaaacaaag cactatgcag cgtagcgcaa
    18721 ccggcacctc ttctcgttca atgggtggct gataccgatg gaaagagtca gtattaccga
    18781 gcgcccggac tggcgtgaaa aagcccacga atacggtttc aattttcaca ccatgtacgg
    18841 cgagccgtac tggtgtgaag atgcttacta caagttgccc ctcgcccagg ttgaaaagct
    18901 ggaagaagtc accgccgaac tgcaccagat gtgcctgaaa gtggtggaaa aagtgatcgc
    18961 cagcgatgag ctgatgacca aattccgcat tccaaaacac acctggagtt ttgtgcgtca
    19021 gtcatggctg actcaccagc catcgcttta ttcgcgtctt gatctggcat gggatggcac
    19081 tggcgaacct aaactgctgg aaaataacgc cgatacacca acgtcactat acgaggcggc
    19141 gttctttcag tggatctggc tggaagatca gcttaacgcc ggtaacttgc cggagggcag
    19201 cgaccagttt aacagtctgc aagaaaagct aatcgatcgc tttgtcgagt tgcgtgaaca
    19261 gtatggcttc cagttgctgc atctcacctg ctgtcgcgac acggtggaag atcgcggaac
    19321 cattcagtat ttgcaggact gcgcgacgga agctgaaatc gctaccgagt tcctctacat
    19381 tgacgatatc gggttaggtg aaaaaagtca gttcacggat ttacaggatc aggtaatttc
    19441 caacctgttc aagctgtatc catgggaatt tatgttgcgt gagatgttct ccaccaagct
    19501 ggaggatgca ggcgtacgct ggctggaacc ggcgtggaag agcattatct ccaacaaagc
    19561 gcttctaccg ctactgtggg agatgttccc gaatcacccg aacctgctgc ccgcttattt
    19621 tgcggaagat gatcatccgc aaatggaaaa atatgtggtt aaaccgatct tctcccgtga
    19681 aggcgcaaac gtgtcgatca ttgagaacgg caaaaccatt gaagcagcgg aaggtccgta
    19741 tggcgaagaa gggatgattg ttcagcaatt ccatccgtta ccgaaattcg gcgacagcta
    19801 tatgctgatt ggtagctggc tggtgaacga tcaacccgcc ggaattggca ttcgtgaaga
    19861 ccgtgcattg atcacccagg atatgtctcg gttttatcca catatttttg ttgagtaatc
    19921 aatgatgccg gatggcattc gccatccggt aattgttaac ctatctgcac cgacagcata
    19981 ctcaggctgc ccatttctat accatcgacc ggaatggtaa ttggctcctg cccatcccac
    20041 gcacctaaga catacaacaa cggcagatag tgctccggcg ttgggttcga taacgcgcca
    20101 ccttcatggt cgaggtaatt caccagagga tgctgctcta ccgccccttg ccacgtcaga
    20161 ttcgctttca catactcatt aaacgacatc gcccaaggat atggtgaact atcaccgtgc
    20221 cacttcactg tacgcaggtt atgcaccacg ttgccactgg cgaccaacat tattccttca
    20281 tctcgcagcg ctgccagttt gcgccccatt tcgaaatgcc aggcggcagg tttgctactg
    20341 tcgatactca actgcaccat cgggatatcg gcgtcaggat acatcttaat cagcacgccc
    20401 caggaaccgt ggtcaaagcc cctggcttct ttatccagcg tcaccgggac cggcgctaac
    20461 agctcaacca gatgctgtgc cagcacaggc gaacccggag caggataatg cgtatcgtac
    20521 agcgcctgcg ggaagccacc aaagtcatga atcgtgggcg gcgtctccat cgcggtcact
    20581 cctgttccac gggtaaacca gtgagccgaa accaccacaa tcgcttgcgg gcgtggcaat
    20641 gtcatcccca acttctgcca gctgcgggta tacaaattat cttccagcac gttcatcgga
    20701 ctaccgtgac ctaaaaacaa tgctggcata cgtgttgaag acatgatgat atccttaact
    20761 aagggtgtca ttttgatatc ctcacaatac gcttgttcgg cggagtaaga acccggataa
    20821 caatgatgat gatcatcagt tattttgacg atctgcctga aggtgaagat ttataaggag
    20881 ttgtcgatgt cagtacctct cattctgacc atactggcgg gggcagccac gtttattggc
    20941 gcgtttctcg gcgttctcgg acaaaaaccc tcgaaccgct tactggcgtt ttcgctaggt
    21001 tttgcggcgg ggatcatgtt gctcatctca ttaatggaaa tgcttcctgc cgcactagca
    21061 gctgaaggaa tatcgcctgt gttgggttat ggaatgttta tcttcggtct gcttggctac
    21121 tttggcctgg accgcatgtt gccgcatgcg catccgcagg atttaatgca aaaatcggtg
    21181 cagccgttgc caaaatcgat caagcgcaca gccattctgc tcactctcgg catcagtctg
    21241 cataacttcc cggaagggat tgccaccttt gtcacggcga gcagcaacct ggagctggga
    21301 tttggcatcg cactggccgt cgcgttgcac aatatccctg aaggtctggc agtggcaggc
    21361 ccggtttatg cggcaacggg gtctaaacgc accgcgattc tgtgggcggg gatttctgga
    21421 ctagcagaaa ttcttggtgg tgtgctggcg tggttaatcc tcggtagcat gatttccccg
    21481 gtggtcatgg cggcggttgc aggaattatg gtggcgctct cggttgatga attaatgccg
    21541 ctcgccaaag agattgaccc taataataac cccagctatg gcgtactatg tggaatgtca
    21601 gtgatgggat tcagtttagt gctgctacaa acggcgggaa ttggttaaaa acaacatcag
    21661 aagttgtcca gcacatggac aacttctgcc agcttcacga aagccttatt ctaccttttc
    21721 ggctgtctct tctctcgtac tgtttaagta tttgttccgc gcttcaagca gtgcgtctct
    21781 gtcctggcga aacgcccgac aataacgttt caaatgcagg aaataaccca ccacaaccag
    21841 agcaatcaat acaatccagt accaggcgat aaacatcctt tacccttaat atttaacaat
    21901 actaaacatt tagcgcataa atttcacata tcctttttcg gatatattca tatggtcgca
    21961 taataacgga acaattatat gattttgatc ataatgaaaa agaatgcctg atattaatga
    22021 aattttctca tagaaagaga agcggaatta acatcttgca tagcagggca aaataaaaac
    22081 cgaagccagc tacaacttcg gtttcttgat taaggcagta attaagcagc ggttttcagc
    22141 tggctttacg ctcatgtgcc tgacggtatg ccaccaggtc ttcaatagtc acgagcgcca
    22201 tattgtgttt attggcaaac tcaatgcact ctggtgcacg cgccatcgtg ccatcgtcat
    22261 tagtcagctc acacagcaca ccagccggtt taaagcctgc cagcgtcatc aaatcaatag
    22321 tcgcttcagt atgaccgcca cgcgtcagta caccacctgc ctgcgcgcga agtgggaaaa
    22381 cgtggcccgg gcgattcaga tcagaaggtt ttgcgccatc ggcaatcgct gcgcgaacgg
    22441 tcgtaatacg atcagcggca gaaacaccgg tagtcacacc ttcagccgct tcaatggtca
    22501 cggtaaaacc ggtgccatag gcgctggtgt tattttctac catcattggc agatcaagtt
    22561 gtttacggcg atcttcagtg atgcacaggc aaacaatacc gctaccgtgg cgaatggtca
    22621 gcgccatctg ctcaacggtc atggtttctg ccgggaagat catatcgcct tcgttttcac
    22681 ggtcttcatc atcaagcacc attacaccgc gtccttcacg cagcgcagcc agtgcatttt
    22741 caacacgttc gaaaggcgta ccaaaagagg aaagtagcgt ctgattcatg gtaaaaaaaa
    22801 ctcactaaaa ttatggttac cagaatcagg gcagtcttag gagtggcggc atatagccaa
    22861 aataacgtga gcgggtccat gcccgacaga atcgttactc tctcccatcc ggactctaac
    22921 cgtcggcccc ggaattacac cggatctgct gtcctttgag ttcgcaccca aagcgctcgc
    22981 gggctttcaa ctgagttgat ttaccgccgg tggggaattt cgccccgccc tgagaataag
    23041 cggattcact ataacgctaa tgattagcgg cagcaacgca tagcttcaca taattctggt
    23101 ttatgactta cccttatcgc actacaatgg tactcaacac ctatcagtac agggaaacta
    23161 caatgattga cccgaaaaaa attgagcaaa tcgctcgcca agttcacgaa tcaatgccta
    23221 aaggaatcag ggagttcggg gaagatgtgg agaaaaaaat ccgccaaacc ctacaagctc
    23281 agctgacgcg cctcgacctt gtaagccgtg aagagttcga cgtccaaacg caagtcctgt
    23341 tacggactcg tgagaaactg gcgctgcttg aacaaagaat gagcgaactg gaaaatcgca
    23401 gtactgagat taaaaagcag ccagatccag agactctccc cccaacgctg taaacatttg
    23461 tctttaatgc actgtaaatt atgaattaat cttctaattt acagtgcttt ctattacctt
    23521 atcgcttaat tccattcaga atatcaccac aaaaatgaat gagtgcaatt gaaaatatta
    23581 ttgttatgta tttttttaag ttttacttaa tccatattta gataaactaa tttcataaaa
    23641 cccgaaaagt aaaatataat atttgaatga ttagcaatcc ttaaataaca gttactaatc
    23701 attcattttc tacttatatt tatataaagg aatattatgt ctgcttttaa aaagtcactt
    23761 cttgttgctg gcgtagcaat gattctttcc aataacgtat ttgctgacga aggtcacggc
    23821 attgttaaat ttaaaggtga agttatctct gctccatgtt caattaaacc aggtgacgaa
    23881 gacttaactg taaatctggg tgaagtagca gataccgttc tgaaaagcga ccagaaatct
    23941 ttggctgagc ctttcactat tcacctgcaa gactgcatgt tgagccaggg tggaaccact
    24001 tattcaaaag cgaaggttac tttcaccaca gcgaatacta tgacgggtca gactgacctg
    24061 ctgaaaaaca ccaaagaaac tgaaatcggt ggtgccacag gcgttggcgt acgtattctg
    24121 aatagccaga gcggcgaagt gactttaggt actccggtag taattacatt caacaatact
    24181 aacagctatc aggaactgaa cttcaaagtt cgtatggaat ccccgggcaa agatgctacc
    24241 ccgggcaacg tttacgctca gactgactat aagattgctt acgagtaatc acattaggcc
    24301 gggttcgccc ggccacatca ttaacggatt aatgataagt ggaacagatg tataaaaaat
    24361 taaaattaac cacaataagc gaattgatta aaaatattta ttgttcatta tccgttctca
    24421 tcattggttg tgcgtcagct tatgccgttg aattcaacaa agatttaatc gaagccgaag
    24481 atcgtgaaaa cgttaacctt tcccaatttg aaactgatgg ccaattaccc gtaggtaaat
    24541 actcattaaa cgctattatt aataataaaa ggacgccaat ccatctggac ctgcaatggg
    24601 tattaattga taaccaaact gcagtttgtc tgactccaga gcaattaaca ttattaggct
    24661 ttactgatga gattattgaa gaggctcagc aaaacctgat cgatggttgt taccctatcg
    24721 aaaaagaaaa acaaattaca acttatctcg ataaagggaa aatgcaatta tccatatctg
    24781 cacctcaggc atggttaaaa tacaaagatg caaactggac gcctcctgaa ctttgggatc
    24841 atggtattgc tggggcattt cttgactaca atttatatgc ctctcattat gcaccacatc
    24901 agggcgataa ttcacaaaat ataagttcct atgggcaggc tggggttaat cttggggcct
    24961 ggcgcctgcg tactgattac cagtacgatc agtcatttaa caatggcaaa agccaggcga
    25021 acaacctgga ttttccgcgt atttatttgt ttcgcccaat cccagcaatt aatgcaaaac
    25081 taactatagg tcaatacgat actgaatcct ctattttcga ctctttccat ttttctggcg
    25141 tttcgttgaa aagcgatgag aatatgttgc cgcctgatct acgtggttac gcaccgcaaa
    25201 tcacgggtgt tgcacaaacg aatgcaaagg tcactgtctc acagaacaac cgtattattt
    25261 atcaagaaaa tgttcctcct ggcccatttg ctattactaa tttattcaat acattacagg
    25321 ggcaactgga cgtcaaggtt gaagaagagg acgggcaagt cacgcaatgg caagttgcat
    25381 ctaatagtat tccttatctg acgcgtaaag ggcagattcg ctacaccact gctatgggta
    25441 aaccgaccag cgttggtggt gattccttac aacaaccctt cttctggact ggtgaattct
    25501 catggggttg gctgaacaat gtatccctgc atggtggttc agttttaaca aaccgtgatt
    25561 atcaatctct ggctgccggc gttggcttta accttaactc attgggttca ttatcttttg
    25621 atgtcacacg atctgatact cagttgcata atcaggataa agaaacgggt tatagctacc
    25681 gcgctaacta ttcaaaacgt tttgaatcta ccggtagcca gctcactttc gctggttacc
    25741 gtttctctga taaaaacttt gtgacaatga atgaatatat caatgacact aaccattaca
    25801 cgaatt
//
LOCUS       DAJVSY010000044        25417 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.044, whole genome shotgun sequence.
ACCESSION   DAJVSY010000044 DAJVSY010000000
VERSION     DAJVSY010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25417
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.044"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..184
                     /locus_tag="OQQ19_001648"
     CDS             <1..184
                     /locus_tag="OQQ19_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HCS1803312.1"
                     /translation="ACMAITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPD
                     IGRQLSPDAWDDVSQE"
     gene            254..1030
                     /gene="yaaA"
                     /locus_tag="OQQ19_001649"
     CDS             254..1030
                     /gene="yaaA"
                     /locus_tag="OQQ19_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HCS1803313.1"
                     /translation="MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPP
                     QISTLMRISDKLAGINAARFHDWQPDFTPANARQAILAFKGDVYTGLQAETFSEDDFD
                     FAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALA
                     AQGDNVVINLASDEYFKSVKPKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRF
                     IIENRLTKPEQLTGFNSEGYFFDEASSSNGELVFKRYEQR"
     gene            complement(1183..1479)
                     /locus_tag="OQQ19_001650"
     CDS             complement(1183..1479)
                     /locus_tag="OQQ19_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2502 domain-containing protein"
                     /protein_id="HCS1803314.1"
                     /translation="MKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGNRDNRGY
                     YWDGGHWRDHGWWKQHYEWRGNRWHPHGPPPPPRHHKKAPHDHHGGHGPGKHHR"
     gene            complement(1693..2979)
                     /gene="thrC"
                     /locus_tag="OQQ19_001651"
     CDS             complement(1693..2979)
                     /gene="thrC"
                     /locus_tag="OQQ19_001651"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HCS1803315.1"
                     /translation="MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEID
                     EMLKLDFVTRSAKILSAFIGDEIPQEILEERVRAAFAFPAPVANVESDVGCLELFHGP
                     TLAFKDFGGRFMAQMLTHIAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRG
                     KISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANSINISR
                     LLAQICYYFEAVAQLPQEARNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVN
                     DTVPRFLHDGQWSPKATQATLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDE
                     TTQQTMRELKELGYTSEPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVEAILGE
                     TLDLPKELAERADLPLLSHNLPADFAALRKLMMNHQ"
     gene            complement(2980..3912)
                     /gene="thrB"
                     /locus_tag="OQQ19_001652"
     CDS             complement(2980..3912)
                     /gene="thrB"
                     /locus_tag="OQQ19_001652"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HCS1803316.1"
                     /translation="MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETF
                     SLNNLGRFADKLPSEPRENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACS
                     VVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDI
                     ISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQ
                     PELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTA
                     QRVADWLGKNYLQNQEGFVHICRLDTAGARVLEN"
     gene            complement(3914..6376)
                     /gene="thrA"
                     /locus_tag="OQQ19_001653"
     CDS             complement(3914..6376)
                     /gene="thrA"
                     /locus_tag="OQQ19_001653"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase I"
                     /protein_id="HCS1803317.1"
                     /translation="MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKIT
                     NHLVAMIEKTISGQDALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIK
                     HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHY
                     LESTVDIAESTRRIAASRIPADHMVLMAGFTSGNEKGELVVLGRNGSDYSAAVLAACL
                     RADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQF
                     QIPCLIKNTGNPQAPGTLIGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAAR
                     VFAAMSRARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAV
                     TERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATT
                     GVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKA
                     LLTNVHGLNLENWQEELAQAKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYAD
                     FLREGFHVVTPNKKANTSSMDYYHLLRHAAEKSRRKFLYDTNVGAGLPVIENLQNLLN
                     AGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARK
                     LLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDEG
                     KVLRYVGNIDEDGACRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAG
                     NDVTAAGVFADLLRTLSWKLGV"
     misc_feature    complement(6401..6520)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00506"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Thr leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00506"
     gene            complement(6456..6521)
                     /gene="thrL"
                     /locus_tag="OQQ19_001654"
     CDS             complement(6456..6521)
                     /gene="thrL"
                     /locus_tag="OQQ19_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thr operon leader peptide"
                     /protein_id="HCS1803318.1"
                     /translation="MKRISTTITTTITITTGNGAG"
     gene            complement(6735..7421)
                     /locus_tag="OQQ19_001655"
     CDS             complement(6735..7421)
                     /locus_tag="OQQ19_001655"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA/rRNA methyltransferase"
                     /protein_id="HCS1803319.1"
                     /translation="MRITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPAT
                     RWVAHGSGDIIDNIKVFPTLVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKS
                     SWMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQ
                     QPTKSDTTADQHQLQALRERVMALLTTLAVADDIKLVDWLQQRLGLLEQRDTAMLHRL
                     LHDIEKNITK"
     gene            complement(7821..7961)
                     /locus_tag="OQQ19_001656"
     CDS             complement(7821..7961)
                     /locus_tag="OQQ19_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803320.1"
                     /translation="MTKVRNCVLDALSINVNNIISLVVGTFPQDPTVSKTAVILTILT
                     AT"
     gene            8057..8773
                     /gene="arcA"
                     /locus_tag="OQQ19_001657"
     CDS             8057..8773
                     /gene="arcA"
                     /locus_tag="OQQ19_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003621071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator ArcA"
                     /protein_id="HCS1803321.1"
                     /translation="MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS
                     EYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYIT
                     KPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYK
                     LPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDT
                     PEIIATIHGEGYRFCGDLED"
     gene            complement(8833..10185)
                     /gene="creD"
                     /locus_tag="OQQ19_001658"
     CDS             complement(8833..10185)
                     /gene="creD"
                     /locus_tag="OQQ19_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein CreD"
                     /protein_id="HCS1803322.1"
                     /translation="MLKSPLFWKMTTLFGAVLLLLIPIMLIRQVIVERADYRSDVEDA
                     IRQSTSGPQKLVGPLIAIPVTELYTVQEEDKTVERKRSFIHFWLPESLMVDGNQNVEE
                     RKIGIYTGQVWHSDLTLKADFDVSRLSELNAPNIILGKPFIVISVGDARGIGVVKAPE
                     VNGTALTIEPGTGLEQGGQGVHIPLPEGDWRKQNLQLNMALNLSGTGDLSVVPAGRNS
                     EMPLTSNWPHPSFLGDFLPAKREVSESGFQAQWQSSWFANNLGERFASGNDTGWENFP
                     AFSVAVTTPADQYQLTDWATKYAILLIALTFMAFFVFETLTAQRLHPMQYLLVGLSLV
                     MFYLLLLALSEHIGFTVAWIIASLIGALMNGIYLQAVLKGWRNSMLFTLALLLLDGVM
                     WGLLNSADSALLLGTSVLVVALAGMMFVTRNIDWYAFSLPKMKASKEVTMDDQLRIWK
                     "
     gene            complement(10243..11667)
                     /gene="creC"
                     /locus_tag="OQQ19_001659"
     CDS             complement(10243..11667)
                     /gene="creC"
                     /locus_tag="OQQ19_001659"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     CreC"
                     /protein_id="HCS1803323.1"
                     /translation="MRIGMRLLLGYFLLVAVAAWFVLAIFVKEVKPGVRRATEGTLID
                     TATLLAELARPDLLSGDPTHGQLAQAFNQLQHRPFRANIGGINKVRNEYHVYMTDSQG
                     KVLFDSANKAVGQDYSRWNDVWLTLRGQYGARSTLQNPADPESSVMYVAAPIMDGSRL
                     IGVLSVGKPNAAMAPVIKRSERRILWASAILLGIALVIGAGMVWWINRSIARLTRYAD
                     SVTDNKPVPLPELGSSELRKLAQALESMRVKLEGKNYIEQYVYALTHELKSPLAAIRG
                     AAEILREGPPPEVVARFTDNILTQNARMQALVETLLRQARLENRQEVVLTVVDVAALF
                     RRVSEARTVQLAEKNITLHVMPTEVNVAAEPALLEQALGNLLDNAIDFTPESGRITLS
                     AEVDQEHVALKVLDTGSGIPDYALSRIFERFYSLPRANGQKSSGLGLAFVSEVARLFN
                     GEVTLRNVQEGGVLASLRLHRHFT"
     gene            complement(11667..12356)
                     /gene="creB"
                     /locus_tag="OQQ19_001660"
     CDS             complement(11667..12356)
                     /gene="creB"
                     /locus_tag="OQQ19_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator CreB"
                     /protein_id="HCS1803324.1"
                     /translation="MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKAR
                     QLVPDVMILDVGLPDISGFELCSQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYV
                     AKPFSPREVCARVRTLLRRVKKFSSPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEF
                     LLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLHAKLRAINPDLSPINT
                     HRGMGYSLRGL"
     gene            complement(12369..12842)
                     /gene="creA"
                     /locus_tag="OQQ19_001661"
     CDS             complement(12369..12842)
                     /gene="creA"
                     /locus_tag="OQQ19_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein CreA"
                     /protein_id="HCS1803325.1"
                     /translation="MKYKHLILSLSLIMLGPLAHAEEIGSVDTVFKMIGPDHKIVVEA
                     FDDPDVKNVTCYVSRAKTGGIKGGLGLAEDTSDAAISCQQVGPIELSDRIKNGKAQGE
                     VVFKKRTSLVFKSLQVVRFYDAKRNALAYLAYSDKVVEGSPKNAISAVPVMPWRQ"
     gene            13053..13922
                     /gene="robA"
                     /locus_tag="OQQ19_001662"
     CDS             13053..13922
                     /gene="robA"
                     /locus_tag="OQQ19_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MDR efflux pump AcrAB transcriptional activator
                     RobA"
                     /protein_id="HCS1803326.1"
                     /translation="MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKD
                     VTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPAL
                     YRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMR
                     YQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVM
                     LQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRP
                     INLRCELLIPIRR"
     gene            complement(13919..14566)
                     /gene="gpmB"
                     /locus_tag="OQQ19_001663"
     CDS             complement(13919..14566)
                     /gene="gpmB"
                     /locus_tag="OQQ19_001663"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase GpmB"
                     /protein_id="HCS1803327.1"
                     /translation="MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATRAK
                     ELGITHIISSDLGRTRRTAEIIAQACGCDIIFDSRLRELNMGVLEKRHIDSLTEEEEN
                     WRRQLVNGTVDGRIPEGESMQELSDRVNAALESCRDLPQGSRPLLVSHGIALGCLVST
                     ILGLPAWAARRLRLRNCSISRVDYQESLWLASGWVVETAGDISHLDAPALDELQR"
     gene            14618..15139
                     /gene="yjjX"
                     /locus_tag="OQQ19_001664"
     CDS             14618..15139
                     /gene="yjjX"
                     /locus_tag="OQQ19_001664"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001649724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inosine/xanthosine triphosphatase"
                     /protein_id="HCS1803328.1"
                     /translation="MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQ
                     PFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENTSQRGEARSA
                     TLPLPAVILQKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVIL
                     ALSPFHNAVYQAL"
     gene            complement(15224..15550)
                     /gene="trpR"
                     /locus_tag="OQQ19_001665"
     CDS             complement(15224..15550)
                     /gene="trpR"
                     /locus_tag="OQQ19_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon repressor"
                     /protein_id="HCS1803329.1"
                     /translation="MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLT
                     PDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEE
                     VLLKSD"
     gene            complement(15640..17577)
                     /gene="sltY"
                     /locus_tag="OQQ19_001666"
     CDS             complement(15640..17577)
                     /gene="sltY"
                     /locus_tag="OQQ19_001666"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase"
                     /protein_id="HCS1803330.1"
                     /translation="MEKAKQVTWRLLAAGVCLLTVSSVARADSLDEQRSRYAQIKQAW
                     DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQ
                     SRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK
                     SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAI
                     ISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNED
                     QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTW
                     LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYE
                     LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYA
                     FNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAW
                     NPKVKSPVGASGLMQIMPGTATHTVKMFSIPGYSSPGQLLDPETNINIGTSYLQYVYQ
                     QFGNNRIFSSAAYNAGPGRVRTWLGNSAGRIDAVAFVESIPFSETRGYVKNVLAYDAY
                     YRYFMGDKPTLMSATEWGRRY"
     gene            17788..19455
                     /gene="ettA"
                     /locus_tag="OQQ19_001667"
     CDS             17788..19455
                     /gene="ettA"
                     /locus_tag="OQQ19_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017145039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HCS1803331.1"
                     /translation="MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAG
                     KSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQEPQLNPEHTVRESIEEAVSEVVNALK
                     RLDEVYALYADPDADFDKLAAEQGRLEEIIQAHDGHNLNVQLERAADALRLPDWDAKI
                     ANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHD
                     RYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWV
                     RQGTKGRQSKGKARLARFEELNSTEYQKRNETNELFIPPGPRLGDKVLEVSNLRKSYG
                     DRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETVKLASVD
                     QFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGER
                     GRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIA
                     THILDYQDEGKVEFFEGNFTEYEEYKKRTLGADALEPKRIKYKRIAK"
     gene            complement(19762..20994)
                     /gene="nadR"
                     /locus_tag="OQQ19_001668"
     CDS             complement(19762..20994)
                     /gene="nadR"
                     /locus_tag="OQQ19_001668"
                     /EC_number="2.7.1.22"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418807.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional transcriptional
                     regulator/nicotinamide-nucleotide
                     adenylyltransferase/ribosylnicotinamide kinase NadR"
                     /protein_id="HCS1803332.1"
                     /translation="MSSFDYLKTAIKQQGCTLQQVADASGMTKGYLSQLLNAKIKSPS
                     AQKLEALHRFLGLEFPRQKKTIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGFDD
                     TRDRALFEDSAMSQQPTVPDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSNG
                     IKKFMAEKGIQPDLIYTSEEADAPQYMEHLGIDTVLVDPKRTFMSISGAQIRENPFRY
                     WEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDE
                     IALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVTTQAFCKKYEGREHPFVQALI
                     DEYRFDLVILLENNTPWVADGLRSLGSSVDRKEFQNLLVEMLEENNIEFVRVEEDDYD
                     SRFLRCVELVREMMGEQR"
     gene            complement(21015..22397)
                     /gene="radA"
                     /locus_tag="OQQ19_001669"
     CDS             complement(21015..22397)
                     /gene="radA"
                     /locus_tag="OQQ19_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001399683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HCS1803333.1"
                     /translation="MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPT
                     VARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGG
                     NPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIE
                     QICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV
                     GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQG
                     LREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLE
                     QNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQ
                     DLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKL
                     SDALSVFDDL"
     gene            complement(22446..23414)
                     /gene="serB"
                     /locus_tag="OQQ19_001670"
     CDS             complement(22446..23414)
                     /gene="serB"
                     /locus_tag="OQQ19_001670"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase"
                     /protein_id="HCS1803334.1"
                     /translation="MPNITWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYG
                     RGLDKQRLTQYQSKLGAAMVIVAAWCVEDYQVIRLAGSLTARATRLAHEAQLDVAPLG
                     KIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRS
                     RVATLKGADANILQQVRENLPLMPGLTQLVLKLETLGWKVAIASGGFTFFAEYLRDKL
                     RLTAVVANELEIMDGKFTGNVIGDIVDAQYKAKTLTRLAQEYEIPLAQTVAIGDGAND
                     LPMIKAAGLGIAYHAKPKVNEKAEVTIRHADLMGVFCILSGSLNQK"
     gene            23520..24071
                     /locus_tag="OQQ19_001671"
     CDS             23520..24071
                     /locus_tag="OQQ19_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803335.1"
                     /translation="MARTKLKFRLHRAVIVLFCLALLVALMQGASWFSQNHQRQRNPQ
                     LEELARTLARQVTLNVAPLMRTDSPDEKRIQAILDQLTDESRILDAGVYDEQGDLIAR
                     SGESVEVRDRLALDTHTLATEAQQVDNTTNILRLMLLLSLAIGVVLTRTLLQGKRTRW
                     QQSPFLLTASKPVPEEEESEKKE"
     gene            24099..25115
                     /gene="lplA"
                     /locus_tag="OQQ19_001672"
     CDS             24099..25115
                     /gene="lplA"
                     /locus_tag="OQQ19_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase LplA"
                     /protein_id="HCS1803336.1"
                     /translation="MSTLRLLISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTV
                     VIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTIST
                     SIVLNALNALGVSAEASGRNDLVVKTAEGDRKVSGSAYRETKDRGFHHGTLLLNADLS
                     RLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITKAFFAHYGERVEA
                     EIISPDKTPDLPNFAEIFARQSSWEWNFGQAPAFSHLLDERFSWGGVELHFDVEKGHI
                     TRAQVFTDSLNPAPLEALAGRLQGCLYRADMLQQECEALLVDFPDQEKELRELSTWIA
                     GAVR"
     gene            25147..25296
                     /locus_tag="OQQ19_001673"
     CDS             25147..25296
                     /locus_tag="OQQ19_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000566138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803337.1"
                     /translation="MIDLENQEREIINLMLSQRISWLAAVRIRHKLSLAEVSKMLGIS
                     INSLK"
BASE COUNT         6106 a         7005 c         6310 g         5996 t
ORIGIN      
        1 ggcctgcatg gctattacca atttgaccgc cattttactg ctctcgcctg tggttcatac
       61 cattgccagt gattatctac gccagcgtaa actcggcgtg cgcccggtgt ttgatccgtt
      121 gcgttatccg gatatcggtc gccagctttc tccggacgcg tgggatgatg tttcgcagga
      181 gtaatcacaa ctatcgatca actcattctc tttttttgct aaagtcggca taaatttcct
      241 gcaaggactg gatatgctga ttcttatttc acctgcgaaa acgcttgatt accaaagccc
      301 gttgaccacc acgcgctata cgctgccgga gctgttagac aattcccagc agttgatcca
      361 tgaagcgcgg aaactgacgc ctccgcagat tagcacgctg atgcgcatca gcgacaaact
      421 ggcgggtatc aacgccgctc gctttcatga ctggcagcca gatttcacgc cggcgaatgc
      481 ccgccaggcg attctggcgt ttaaaggtga tgtctacacc ggcttgcagg ccgaaacctt
      541 cagcgaagac gatttcgatt ttgcccaaca gcatttgcga atgctttccg gcttgtatgg
      601 cgtactgcgc ccgctcgatt taatgcagcc ttatcgtctg gaaatgggga tccgtcttga
      661 gaatgcccga gggaaagatc tgtatcaatt ctggggagat atcatcacca acaagctgaa
      721 cgaggcgctc gcagcacaag gcgataatgt ggtgattaat ctggcgtcag atgagtattt
      781 taaatcggtg aagccgaaga aattgaatgc cgagattatc aagccggtgt tcctcgatga
      841 gaagaacggc aaatttaaga tcatcagctt ctacgctaag aaagcacgcg gtctgatgag
      901 tcgtttcatt attgaaaatc ggctgaccaa accagagcaa ctgactggtt ttaatagcga
      961 aggttacttc tttgatgaag cttcctccag caatggcgaa ctggtgttta aacgctacga
     1021 gcagcgttaa gtttgcagtc aatgccggat gcggcgtgaa cgccttatcc ggcctacaaa
     1081 agcatgcaga ttcaatatat tgcagaattc acgtaggcct gataagacgc gccagcgtcg
     1141 catcaggcgc tgaatgccgg attgttaccc ggcatttgtc atttagcggt gatgtttgcc
     1201 tggaccatga ccgccgtgat gatcatgagg agctttctta tggtggcgcg gcggtggcgg
     1261 cggtccgtgt gggtgccagc gattgcctcg ccattcataa tgttgtttcc accagccgtg
     1321 gtcgcgccag tgacctccat cccagtaata gccacgatta tcacgattgc ctatctgtaa
     1381 ttttactgac gggactaacg taatttccgc agcctgtgct gccatgggag cgaccagaac
     1441 cagggaaagt gcgagtacga tagattgcat ctttttcaca ggttactcct tttatcattg
     1501 cccgttatgg gtcgatatcc ggagattacg cgatgagaac gacggttgtt attctccgca
     1561 atcctaatct ctaagttacc gcatttattg agaatatctc ctttttccct gtcgtttttc
     1621 tccataattt cttcataaaa aagccgggct gcataaaagc aaacccggcc tgattgagat
     1681 aatgaataga ttttactgat gattcatcat caatttacgc aacgcagcaa aatcggcggg
     1741 cagattatgt gaaagcaagg gtaaatcagc acgttctgcc agctcttttg gcagatccaa
     1801 cgtttcaccg agaatcgctt ccacgctctc tttaaatttc gccggatgcg cggtgccgag
     1861 gaacaagcca tattcgcctg gattcaactg gtcacgcagc gcacgatacg ctacggcagc
     1921 gtgcggctcc gaggtgtagc ccagttcttt taactcacgc attgtctgtt gcgtggtttc
     1981 atcatccacg gctgcataac ccagctcttt cagttgccag attttgcggc ggaacaactc
     2041 ttccacacgc ggccagttgt tcggctgact cacgtccatc gcgttggata acgtcgcctg
     2101 agtcgctttg ggtgaccact gaccgtcgtg caggaaacgt ggcacggtat cgttcacgtt
     2161 ggtcgcagca ataaaacgtt tcaccggcag accgagtgac ttcgccagca gacccgccgt
     2221 caaatcgccg aagtttccgc ttggcaccga gacaaccagc tggttgcgcg cttcctgcgg
     2281 cagctgcgca actgcttcaa agtagtagca aatctgcgcc agcaaacggc tgatgttaat
     2341 cgagttagct gagtttaacc ccagcgccac tttcagctct tcatcatcaa acgcctgctt
     2401 caccagcgcc tgacaggcat cgaaatcgcc gtcgatggca acagtttcga tattgccgcc
     2461 caatgtacag aacagttttt cttgcagtgg actgattttg cctcgtggat agaggataac
     2521 cactttcaca ttcggtaaac cgtagaaagc atgagccact gccgctccgg tatcaccgga
     2581 ggtcgcggtc agaatggtca ctggcttatc gcccgcaata tgggtcagca tttgtgccat
     2641 aaagcgaccg ccgaaatctt taaatgccag cgttggcccg tggaacaatt ccagacaacc
     2701 gacatcgctt tcaacattgg cgaccggagc cgggaaggca aacgccgcgc gcacgcgctc
     2761 ttccaggatt tcctgcggga tttcatcacc aataaacgcc gagaggatct tcgcactgcg
     2821 ggtgacaaaa tccagcttca gcatctcatc aatttcagtc aggctgaatt ccggcaggtc
     2881 gtgcggaaaa aacagcccct gatttttgcc caacccctgg gttacggctt gcgcaaagct
     2941 gacctgctca ttgtgatctt tcagattgta gagtttcatt tagttttcca gtactcgtgc
     3001 gcccgccgta tccagccggc aaatatgaac aaaaccttcc tgattttgca ggtagttctt
     3061 acccaaccag tcggcaacgc gctgggcggt atccggcttg tcacacagag cgaacaaggt
     3121 cgggccggag ccggagatac cgctcgctac cgcgccgatt tccgcaaccg cctgccgcgc
     3181 ctgccggaag ccaggcagta accgttcacg gtagggttca gcgataacat ctttcatcag
     3241 cttcgcggca agctcaggct gacgggaata gcaggcgtga atgaagccag ccagatgtcg
     3301 cccgtgcgca atgcaatcct ggcggcgata ctgcgccggt aaaatagccc tggcttctgc
     3361 cgttgagact ttaatccccg gatacgccag cacccacagc cactcatcaa accctggcac
     3421 ttgctggctg atgatgtcgt tttcttcgat catcaactgc ataccaccaa gaaaacacgg
     3481 tgccacgttg tcgtaatgaa tgctgccgga gattcgtcct tccagctcgc ccatcaaagc
     3541 cagcaaacga gtgtcattaa gcggcttgcc acagtgttca ttcatcgcca tcagcgccgc
     3601 gaccaccgaa caggcgctgg agcctaagcc cgaaccgatt ggcatattct tttccagagt
     3661 catcgccact ggaatttgct tgccaagctc ctggcaaaaa cgctcccagc actgataaac
     3721 gatattttcc cgtggttctg acggcagctt atcggcaaag cgtccgaggt tgttgagact
     3781 gaatgtctct gccgcctcaa ccgtgactac atctccgagc aatgcaccat caacaggtgt
     3841 caccgccgcc ccgagcacat caaacccgac gctcatattg gcactggaag ccggggcata
     3901 aactttaacc atgtcagact cctaacttcc atgagagggt acgtagcaga tcggcaaaga
     3961 caccggcagc tgtaacgtca ttgcccgcac catatccgcg cagcaccaac ggcagcggct
     4021 gataatagtg gctataaaag gccagggcgt tttcgccatt tttcactttg aacagcggat
     4081 cattaccatc cacttcggca atcttcacgc ggcaggcacc atcttcatca atattgccaa
     4141 catagcgcaa aacttttcct tcatcacggg ccttcgccac gcgcgcggca aagagatcgt
     4201 cgagctgtga cagattcgcc ataaaagcgg caacatcacc ctcagcgtta aactctgcgg
     4261 gcagcacagg ttcaatttca atatccgcca gctccagttc acgtcccgtt tcacgagcga
     4321 gaatcaatag cttacgcgct acatccatac cagaaagatc atctcgcgga tccggttcgg
     4381 tataacccat ttcccgcgcc agagtagtcg cctcggagaa actcatgcct tcgtctaact
     4441 tgccgaagat ataagaaagc gaacctgaaa gaatgccgga gaacttcatc aattcatcac
     4501 cagcattgag cagattttgc aggttctcaa taaccggtaa tccagcccca acgttggtgt
     4561 catagaggaa tttacgccgc gatttttccg ccgcatgacg caacagatgg tagtaatcca
     4621 tcgacgaggt gttggccttt ttgttcggcg tgacaacgtg gaaaccttcg cgcaagaagt
     4681 cggcatattg atccgccact gcctggctgg aggtgcagtc aacaatgacc gggttcagca
     4741 gatgatattc tttcacgagg cgaattaagc gcccgagatt aaacggctct ttggcttgcg
     4801 ccagttcttc ctgccagttt tccagattta ggccatgcac attggtgagc agtgccttcg
     4861 agttggcaac accgcagaca cgtaagtcga tatgtttatt cttcagccag ctttgttgac
     4921 gcttcagttg ctccagcagc gcaccgccaa cgccaccgac gccaatcaca aacacttcga
     4981 taacctgatc ggtattgaac agcatctgat gagtaacgcg cacgccagtg gtcgcatcat
     5041 cgttatttac cacgacagag attgagcgtt cagaagatcc ctgagcaatg gcgacaatgt
     5101 tgatattggc gcgggccagc gcggcaaaga atttcgccga gatcccacgc aaggtgcgca
     5161 taccatcacc taccaccgag ataatggcca gccgttccgt caccgccagc ggctccagta
     5221 agccttcttt cagttccagg tagaactctt cctgcattgc ccgttcagct cgcacacagt
     5281 cgctttgtgg aacgcagaaa ctgatactgt attcggaaga tgattgcgta atcagcacca
     5341 cggaaatacg ggcgcgtgac attgcagcaa agacgcgcgc cgccatgccg accattcctt
     5401 tcatccccgg accagaaacg ctgaacattg ccatattatt cagattggaa atgcctttga
     5461 ccggtaattc gtcttcatca cggctggcac caatgagcgt acctggtgct tgaggatttc
     5521 cggtattttt aatcaggcaa gggatctgga actgggcgat gggggtaatg gtgcgggggt
     5581 gaagaacttt agcgccgaag taggaaagct ccatcgcttc ctggtaggac atcgacttca
     5641 acaacctcgc atcgggcacc tgacgcgggt cgcaggtata gaccccgtca acgtccgtcc
     5701 aaatctcgca acaatcggcg cgtaaacagg cagccagcac cgccgcggag tagtcggaac
     5761 cgttacgtcc aagtaccacc agttcgcctt tttcattacc ggaggtgaaa cctgccatca
     5821 acaccatgtg atcagccgga atgcggcttg ccgcaatacg gcgggtggac tcagcaatat
     5881 cgacggtaga ttcgaggtaa tgccccactg ccagcagttt ttcgaccgga tcgataacgg
     5941 taacgttgtg accacgagct tctaacacgc cggccataat ggcgatcgac attttctcgc
     6001 cacggcaaat cagcgcagcg ttgatgctat ccgggcactg ccccaacaaa ctaatgccat
     6061 gcaggacatg ttttatttgg gcaaattcct gatcgacgaa agttttcaat tgcgccagcg
     6121 ggaaccccgg ctgggcggcg gcgagtcccg tcaaaagttc ggcaaaaata cgttcggcat
     6181 cgctgatatt gggtaaagca tcctggccgc taatggtttt ttcaatcatc gccaccaggt
     6241 ggttggtgat tttggcgggg gcagagagga cggtggccac ctgcccctgc ctggcattgc
     6301 tttccagaat atcggcaaca cgcagaaaac gttctgcatt tgccactgat gtaccgccga
     6361 acttcaacac tcgcatggtt gttacctcgt tacctttggt cgaaaaaaag cccgcactgt
     6421 caggtgcggg cttttttctg tgtttcctgt acgcgtcagc ccgcaccgtt acctgtggta
     6481 atggtgatgg tggtggtaat ggtggtgcta atgcgtttca tggatattgt gtactctgta
     6541 atttttatct gtctgtgcgc tatgcctata ttggttaaag tatttagtga cctaagtcaa
     6601 taaaatttta atttactcac ggcaggtaac cagttcagaa actgctatca gacactcttt
     6661 ttttaatcca cacagagaca tattgcccgt tgcagtcaga atgaaaagct gaaaaatact
     6721 tactaaggcg ttttttattt ggtgatattt ttttcaatat catgcagcaa acggtgcaac
     6781 attgccgtgt ctcgttgctc taaaagcccc aggcgttgtt gtaaccagtc gaccagtttt
     6841 atgtcatctg ccactgccag agtcgtcagc aatgccatga ctcgttcgcg taaagcttgc
     6901 agttgatgtt ggtctgccgt tgtgtcactt ttcgtcggtt gttgtattaa tgttgctaat
     6961 tgatagcaat agaccatcac cgcctgcccc agattgagcg aaggataatc cgccaccatc
     7021 ggcacaccag taagaacgtc agccaacgct aactcttcgt tagtcagccc ggaatcttcg
     7081 cgaccaaaca ccagcgcggc atggctcatc catgaagatt tttcctctaa cagcagcacc
     7141 agttctactg gcgtggcgta gtaatgatat ttcgcccgac tgcgcgcagt ggtggcgaca
     7201 gtgaaatcga catcgtgtaa cgattcaacc agtgtcggga aaactttaat attatcaata
     7261 atatcaccag atccatgtgc gacccagcga gtggctggct ccagatgtgc ctgactatcg
     7321 acaatccgca gttcgctaaa acccatcgtt ttcattgccc gcgccgctgc cccaatattt
     7381 tctgctctgg cgggtgcgac cagaataatc gttatacgca tattgccact cttcttgacc
     7441 aaatgaccgc gaacagggtg atcactgtca acttattaca cggtgcgaat ttacaaatcc
     7501 ttaacgtaag tcgcagaaaa agccctttac ttatcttaag taaggctaaa ctatttcctg
     7561 actgtactaa cggttgaatt gttaaaaaat gctacatatc cttctgttta cttaggataa
     7621 ttttataaaa aataaatctc gacaattgga ttcaccacgt ttattagttg tatgatgcaa
     7681 ctagttggat tattaaaata atgtgacgaa agctagcatt tagatacgat gatttcatca
     7741 aactgttaac gtgctacaat tgaacttgat atatgtcaac gaagcgtagt tttattgggt
     7801 gtccggcccc tcttagcctg ttatgttgct gttaaaatgg ttaggatgac agccgttttt
     7861 gacactgtcg ggtcctgagg gaaagtaccc acgaccaagc taatgatgtt gttgacgttg
     7921 atggaaagtg catcaagaac gcaattacgt actttagtca tgttacgccg atcatgttaa
     7981 tttgcagcat gcatcaggca ggtcagggac ttttgtactt cctgtttcga tttagttggc
     8041 aatttaggta gcaaacatgc agaccccgca cattcttatc gttgaagacg agttggtaac
     8101 acgcaacacg ttgaaaagta ttttcgaagc ggaaggctat gatgttttcg aagcgacaga
     8161 tggcgcggaa atgcatcaga tcctctctga atatgacatc aacctggtga tcatggatat
     8221 caatctgccg ggtaagaacg gtcttctgtt agcgcgtgaa ctgcgcgagc aggcgaatgt
     8281 tgcgttgatg ttcctgactg gccgtgacaa cgaagtcgat aaaattctcg gcctcgaaat
     8341 cggtgcagat gactacatca ccaaaccgtt caacccgcgt gaactgacga ttcgtgcacg
     8401 caacctgctg tcccgtacca tgaatctggg tactgtcagc gaagaacgtc gtagcgttga
     8461 aagctacaag ttcaatggtt gggaactgga catcaacagc cgttcgttga tcggccctga
     8521 tggcgagcag tacaagctgc cgcgcagcga gttccgcgcc atgcttcact tctgtgaaaa
     8581 cccaggcaaa attcagtctc gtgctgaact gctgaagaaa atgaccggcc gtgagctgaa
     8641 accacacgac cgtactgtag acgtgacgat ccgccgtatt cgtaaacatt tcgaatctac
     8701 gccggatacg ccggaaatca tcgccaccat ccacggtgaa ggttatcgct tctgtggtga
     8761 tctggaagat taatcggctt taccaccgtc aaaaaaaacg gcgcttttta gcgccgtttt
     8821 tatttttcaa ccttatttcc agatacgtaa ttgatcgtcc attgtaactt ctttactggc
     8881 tttcattttc ggcagtgaaa acgcatacca gtcgatatta cgagtcacaa acatcatgcc
     8941 ggccagcgcc accaccagca cactggttcc caacaacagc gcgctatcgg cagagttgag
     9001 cagtccccac atcacaccat ccagcaacaa cagcgcgagg gtaaacaaca tgctgttgcg
     9061 ccagcctttc aataccgcct gcaaataaat accgttcatt aacgccccaa tcagactggc
     9121 gattatccat gccacggtaa aaccgatatg ttcagaaagc gccagcaaga gcaaataaaa
     9181 catcaccaat gaaagcccca ccagcaaata ttgcattggg tgtaaacgtt gcgcggtgag
     9241 cgtttcaaaa acaaagaacg ccataaaagt cagtgcaatc agcagaatgg cgtacttagt
     9301 cgcccagtcc gttaattggt attgatcggc tggcgtcgtc actgcgacgc taaacgcggg
     9361 gaagttttcc cagccggtat cattgcctga agcaaaacgc tcaccgagat tattagcaaa
     9421 ccagctgctt tgccattgcg cctgaaaacc tgactcgcta acttcccgtt tggctggtag
     9481 aaaatcacct aaaaaactgg gatgcggcca gttgctggtt aagggcattt cgctattacg
     9541 cccggcaggc accacagaaa gatcgccggt accgcttaaa ttcagtgcca tattcagctg
     9601 caggttctgc ttccgccagt ccccttcggg taaagggata tgcacgccct gcccgccttg
     9661 ctctaacccg gtaccgggtt caatggtcag tgccgttccg ttaacttcag gcgctttcac
     9721 cacaccaata ccacgcgcat ccccgacgct aatcacaata aagggcttgc ctaagatgat
     9781 atttggcgcg ttgagctcgc taagacgcga aacatcgaaa tcggctttta gcgttaaatc
     9841 actgtgccag acctgaccgg tataaatccc tatcttgcgt tcttccacgt tctgattgcc
     9901 atcaaccatc aatgactcag gtaaccaaaa atggataaaa cttcgtttcc gctccacggt
     9961 tttatcctct tcctgcaccg tataaagctc ggtcacagga atagcgataa gcggcccaac
    10021 gagtttttgc ggcccgctgg tactttggcg aatcgcatct tccacatcgc tacggtaatc
    10081 ggcacgttcg acaatcactt gccgaatcag cattatcgga atcaacaaca gcaatactgc
    10141 accaaacaag gtggtcattt tccagaacag gggggatttc aacatagtct tctcctttgc
    10201 aatggcagca ggatacgaag gctatgtggg aagaatttga agctatgtga agtgacggtg
    10261 aagtcgaagc gaggccagca cgccaccttc ctgcacgttg cgcagcgtga cttcgccgtt
    10321 aaacaaacgg gcgacctcac tgacgaacgc caaccccaga ccgctgcttt tttgcccatt
    10381 tgcacgcggc aaagagtaaa agcgttcaaa aatacgtgac agcgcgtagt caggaatacc
    10441 actaccggta tccagcacct taagggcgac gtgttcctga tccacttcgg cgcttagcgt
    10501 tatgcgaccg ctctcggggg taaaatcgat ggcgttatcc agtaaattcc ccagcgcctg
    10561 ctccagtaac gccggttcag cagcaacatt aacctcagtg ggcataacat gtagagtgat
    10621 gtttttttct gccaactgca cggtgcgcgc ttcgctgacg cggcgaaata atgccgccac
    10681 atcaacaaca gtcagaacga cttcctgacg attctccagt cttgcctggc gtagtaacgt
    10741 ttctaccaat gcctgcatac gcgcattttg cgtcagaatg ttgtcggtaa aacgagccac
    10801 cacttccggt ggcggacctt cgcgtaaaat ttccgccgcg ccacgaatcg ccgccagtgg
    10861 gctttttagc tcatgggtta acgcataaac atactgctca atatagtttt tcccttccag
    10921 cttcacgcgc atactttcca gcgcctgcgc aagcttacgc aactcgctac tgccgagttc
    10981 aggaagagga acgggcttat tgtcagtgac ggaatcggca tagcgagtga gccgggcaat
    11041 ggagcggttg atccaccaaa ccatgcctgc gccaatcacc agtgcaatcc ccagcaaaat
    11101 ggcgctggcc cataaaattc gccgctcgct acgcttaatg accggagcca tcgccgcgtt
    11161 cggtttgcct acgctcaaaa cgccaataag ccgcgagccg tccataatcg gcgcggcaac
    11221 atacatcacc gaactttcgg gatcggcagg attttgcaac gtgctgcgcg caccatactg
    11281 accacgcaac gttagccaga cgtcattcca gcgcgaataa tcctgcccaa cggctttatt
    11341 tgccgaatcg aacaatactt taccctgcga atcggtcata tagacatgat attcattgcg
    11401 cactttgtta atgccaccga tattggcgcg aaacggacga tgttgtagct gattaaacgc
    11461 ctgcgccagt tgcccatgcg ttgggtcccc agagagcaaa tcgggacgcg ccagctccgc
    11521 cagcaacgtt gcggtgtcga tcaacgtccc ctccgttgct cttcgcacgc ccggtttaac
    11581 ttctttgaca aaaatagcca gtacgaacca ggccgccacc gccaccagta aaaaatagcc
    11641 cagcagcaac cgcatgccga tacgcattac aggcccctca ggctatatcc catgccgcga
    11701 tgagtattaa tcggtgaaag atcggggttg atggcacgca gcttggcatg caacgtttta
    11761 atgtgggtat caacggtgcg atcgtaggtg tcctgcgcat cttcccacac gctatccatc
    11821 agttgctggc gggaccagac gcggcctggc gacttgagta acgtcttcag caataaaaac
    11881 tcataccgcg tcagcgttaa tggcgtgtca aaccagctga tctgcgccgc gggttcattc
    11941 aattcaaaat gaccaatacg gatgacggga gacggcgacg agaacttctt cacccgacgc
    12001 agtaaggtgc gcaccctggc gcacacttcg cggggtgaaa acggtttagc cacatagtcg
    12061 tcagcgccaa tttccagccc aagcaggcga tcgacctctt cacttcgggc cgtcaggaac
    12121 agtacaggta acgccggatg gagcgccagt aactggctgc acaattcaaa gccgctgata
    12181 tcaggcaaac caacgtcgag aatcatgacg tcgggaacca gctggcgagc tttatccagc
    12241 accggcaagc ctcgctcaaa gacctcgacg gcaaaacctt cctgctgcaa catgtagacc
    12301 agcgtgtcgg ctatcccttg ctcatcttcc actaaccaga ccgtttcccg ttgtataaat
    12361 cgcctctgtt attgccgcca cggcatgaca ggaaccgcgc taatcgcgtt tttcggcgaa
    12421 ccttctacaa ctttgtcgga gtaagccaga taagcgagcg cgttgcgttt ggcgtcataa
    12481 aagcgcacga cctgtaacga cttaaagacc agggacgtgc gttttttgaa tactacctcg
    12541 ccctgagctt tgccgttttt aatacgatcc gacagttcaa tcggcccgac ttgctgacaa
    12601 gaaatagccg catcggaggt atcttccgcc agacccaatc cccctttaat accacctgtt
    12661 ttcgcccggc tcacataaca ggtgacattt ttcacatcgg gatcgtcaaa ggcttccaca
    12721 acaattttgt gatccgggcc gatcatttta aatacggtgt cgaccgaacc aatctcttct
    12781 gcatgagcca atggccccag cattatcagg cttaaagaca ggatcaaatg cttgtatttc
    12841 atattgttac catttttatc tattacacga gcaattagtt cgtcacggta aataacatat
    12901 tgattaagaa caaaatctca attcttttat ttccgtcaag ccctaaaaca tactctacta
    12961 agaaaaaaac actgaatgct aaaacagcaa aaaatgctat tatccaatta cctgatgtca
    13021 ggtgctcgtt gttgaaagga tgaggatatt ttatggatca ggccggcatt attcgcgacc
    13081 ttttaatctg gctggaaggt catctggatc agcccctgtc gctcgacaat gtagcggcga
    13141 aagcaggtta ttccaagtgg cacttacaga gaatgtttaa agatgtcact ggccatgcta
    13201 ttggcgcgta tattcgtgct cgtcgtttgt cgaaatcggc ggtcgcacta cgcctgactg
    13261 cgcgtccgat tctggacatc gcgctgcaat accgcttcga ctctcaacag acatttaccc
    13321 gcgcattcaa gaagcagttt gcccagactc ctgcacttta ccgccgttct cctgaatgga
    13381 gcgcctttgg tattcgcccg ccgctacgtc tgggtgaatt cacaatgcca gagcacaaat
    13441 ttgtcaccct ggaagatacg ccgctgattg gtgttaccca gagctactcc tgttcgctgg
    13501 agcaaatctc tgatttccgc catgaaatgc gttatcagtt ctggcacgat tttctcggca
    13561 acgcgccgac cattccgcca gtgctctacg gcctgaatga aacgcgtccg agtcaggata
    13621 aagacgacga acaagaggta ttctatacca ccgcgttagc ccaggatcag gcagatggct
    13681 atgtactgac ggggcatccg gtgatgctgc agggcggcga atatgtgatg tttacctatg
    13741 aaggtctggg aaccggcgtg caggagttta tcctgacggt atacggaacg tgcatgccaa
    13801 tgctcaacct gacgcgccgt aaaggtcagg atattgagcg atactacccg gcagaagacg
    13861 ccaaagcggg agatcgccca attaatctgc gctgtgaact gctgattcct atccgccgtt
    13921 aacgctgcag ctcatctaat gcaggggcgt ccagatgcga gatgtcccct gcggtttcaa
    13981 cgacccagcc agacgccagc cacaggcttt cctgataatc cacgcgcgaa atagaacagt
    14041 tacgcagacg taagcggcgc gctgcccatg ctggtaatcc gagaatcgta ctcaccagac
    14101 atcccagtgc aataccatgg ctcaccagca gcggtcggct tccctgcggt aagtcccggc
    14161 aagattccag tgccgcattg acgcgatcgc tgagctcctg cattgactcg ccttcaggaa
    14221 tacgcccgtc aacggtgcca ttgaccagct gccgacgcca gttctcttct tcttcggtca
    14281 gagaatcgat atgtcttttt tccagcacac ccatgtttaa ttcacgcagg cgagaatcaa
    14341 agatgatgtc acagccgcag gcctgggcga tgatttccgc cgtacgccgg gtgcgtccta
    14401 aatcgctact gataatatgc gtaatgccaa gctctttggc acgggttgcc acctgcatcg
    14461 cctgttgctc acctttggcg gtcagcgggc tgtcagactg gccctgaata cgtcgctcgg
    14521 cgttccactg cgtttcaccg tggcggacta ggtatacctg taacatgctt tttttccgta
    14581 tactgctgta acgttaattt tctgagtaat gctgattatg caccaagttg tctgtgcgac
    14641 caccaatccc gctaaaattc aggccattct gcaggcattt cacgagatct tcggcgaagg
    14701 atcctgccat attgcatccg ttgccgtcga gagcggtgta ccggaacagc cctttggcag
    14761 tgaggaaacg cgcgctggcg cacgaaatcg ggtagcaaat gcccgccgtt tacttccaga
    14821 ggctgatttt tgggtggcga ttgaagctgg catcgatggt gacagcactt tcagttgggt
    14881 ggtgattgaa aacaccagcc agcgcggcga ggcgcgttcg gctactttgc cgttacctgc
    14941 ggtgattctg cagaaagtgc gtgaaggtga ggcgcttggt cccgtgatgt cgcgttatac
    15001 cggtattgat gagattggtc gtaaggaagg ggcgatcggc gtgtttaccg ccgggaaact
    15061 cactcgcgcc agcgtctatc accaggcggt gatcctggcg ctgagtccgt ttcacaatgc
    15121 cgtgtatcag gcattgtagg acggataagg cgttcacgcc gcatccggca ttcggtgcac
    15181 gatgcctgat gcgacgctgc cgcgtcttat caggcctaca aaatcaatcg cttttcagca
    15241 acacctcttc cagccactgg cgcagctcca cgggcgcggc tttcaggctg ttagatccac
    15301 gcgtaatcgt cgcgatgccc gcgccgagtt cattttttaa ctcacgctga ctcatttcgc
    15361 cacgcaacag ctcttcgaca atacgcacgc gagtccccaa cgcttcgcgc tcatctggcg
    15421 tcagcatcag gtttaacaac ggtaaatgga gatcgttttg gtaggcattc ttaagcaggt
    15481 cgacaaaacg taaccactcc tggtgacgct gttctgccat cgctgctgaa tagggtgatt
    15541 gttgggccat aatatgtcgc cattgttagc gggggaagca aaatgcctcc cccggttgta
    15601 ctcgctaaag agtacgatag catatcataa acgtgcggat cagtaacgac gtccccattc
    15661 cgtggcgctc atcaacgtcg gtttatcccc catgaaataa cggtagtaag cgtcataagc
    15721 cagcacgttc ttcacataac cgcgcgtctc ggagaacgga atactctcga caaatgccac
    15781 agcgtcgata cgcccggcgc tgttgccaag ccaggttcgc acccgtccag gtccggcgtt
    15841 ataagctgct gaggagaaaa tacggttatt gccaaactgc tgataaacat attgcaggta
    15901 actggtgcca atgttgatat tcgtttccgg atccagcaat tgcccagggc tgctataacc
    15961 aggaatagag aacatcttca ccgtatgggt cgctgtacca ggcataatct gcatcaggcc
    16021 gctggcccct accggtgatt tcactttcgg attccaggcg ctctcctgac gggcaatcgc
    16081 catcgcatag ctttgcggga tctctttccc actggtgtaa cgtttgaaaa gatcgttgta
    16141 agccagcggg aatcgctctt ccagatgatc ccaaagcttc ccggcgatcg ttgcctgaac
    16201 gctaagatcc caccattggt tattgaaagc ataccgagcc agttgagcct gctctgtttt
    16261 tgacttgctc ttcaccagat tggcccactc gctacgcgcg gtgttatcga gattccagta
    16321 catcaactcg cgcacgcgcg ccatctccgg cccctgagtc agggcgctgt caacattctg
    16381 cggcgcttta tcaatcttca gctcatactc ttctccgatg cgttgtgctg caaccatcgg
    16441 gtagaaacca cgctgttgca tgagttgatg caaaatctct ttcgcttcag cttcacgtcc
    16501 gcgttccagc aataaatccg cctgccagta acgccattca tctttctctt ttgcttccat
    16561 cggcagacgc gccagccagg tattcaggcc gcgacgatcg ccggtgccaa gtgccattcg
    16621 cacacggcgt tcaatcaacg acgtggattg cgagcgcata atggcgtcat cgcgccattt
    16681 cgcctgctcg tcggtgacat cgttgcccat caaacgccag gcgacgatat cgcgcagctc
    16741 ctgaatctga tcttcattaa gctgctgcgc ctgggcaagc gacgggatca tcagccgtgc
    16801 attttcagca tcctgccgcg ccacactggc aaacgccacc gctgccattt gacgggtaaa
    16861 atcggtcgct ccggttgtac gcgcgaaggt cagtaccgta ttagggttgt tcgccagtga
    16921 aatgattgcc gaggcgatag tctggtaatc ggcaggcatc tgccctgcca gcactgttac
    16981 caggccagtg ttacccgctt tcatcgccag acggatacgc tctaaatacg ccagcggatc
    17041 ttgtttacct gacgcacgcc agacgctaaa taacttgtca caggcgttag gctggctctt
    17101 gccggttagc cacagctctt tcgccccttg ccaggcttct tcactctgcc cggtgttcca
    17161 tttcgcatag tagtaattac attgcgcttc ggtagttccg ggcttttccg ggctaaaggc
    17221 taacaagcca cgccagtctt cacgccgcgc cagttcattg acgaaacgag attgcagcgt
    17281 gcgagcggga ggaagcgtgg ggttagcgcg aacaaagtta gtgaccgtca ccgccggttg
    17341 attcatcaga tcatcggtga tctggcggta ttccaggtag ggataaagcg gataatcctt
    17401 cagtccaggc atcatttgtt cgaccacatc catttgtcga ttatcccagg cctgcttgat
    17461 ttgcgcgtaa cggctacgct gctcatccag tgagtcggct cgcgccacgc tgctgaccgt
    17521 cagcagacag acaccggcag ccaacagccg ccaggtaact tgtttggctt tttccacaag
    17581 cgcatcctct aagtgtaaat acatcaatgc agcgtcatgc cgcgtaatag atttatgcta
    17641 accagtcatt gccgtttacg ccacgttacg gacacttttt tacttttact gcgaaggtga
    17701 tcgaccaact gggattaggc ggggaaaaag gctacacttc gcctttgaaa actcatcatc
    17761 acgataaaca tagaggcgaa gtccaacgtg gctcaattcg tttataccat gcatcgtgtc
    17821 ggcaaagttg ttccgccgaa acgtcatatt ttgaaaaaca tctctctgag tttcttccct
    17881 ggggcaaaaa ttggtgtcct gggtctgaac ggcgcgggta agtctaccct gctgcgcatt
    17941 atggcaggca ttgataaaga catcgaaggt gaagcgcgtc cgcagccaga catcaagatt
    18001 ggttacctgc cgcaggaacc gcagctgaac ccggaacaca ccgtgcgtga gtccattgaa
    18061 gaagcggttt ctgaagtggt taacgccctg aaacgcctgg atgaagtgta tgcgctgtac
    18121 gccgatccgg atgccgattt tgacaagctg gccgctgaac aaggccgtct ggaagagatc
    18181 attcaggctc acgacggtca taacctgaac gtacagctgg agcgtgcggc ggatgcgcta
    18241 cgtctgccgg actgggacgc gaaaatcgct aacctctccg gtggtgagcg tcgtcgcgta
    18301 gcgttgtgcc gcctgctgct ggaaaaacca gacatgctgc tgctcgacga accgaccaac
    18361 cacctggatg ccgaatccgt ggcctggctg gaacgcttcc tgcacgactt cgagggcacc
    18421 gtggtggcga ttacccacga ccgttacttc ctcgataacg ttgcaggctg gatcctcgaa
    18481 cttgaccgcg gtgaaggtat tccgtgggaa ggcaactact cctcctggct ggagcagaaa
    18541 gatcagcgcc tggcgcagga agcttcacaa gaagcggcgc gtcgtaagtc gatcgagaaa
    18601 gagctggagt gggtacgtca gggaactaaa ggccgccagt cgaaaggtaa agcacgtctg
    18661 gcacgctttg aagagctgaa cagcaccgaa tatcagaaac gtaacgaaac caacgaactg
    18721 tttattccac ctggaccgcg tctgggcgat aaagtgctgg aagtcagcaa cctgcgtaaa
    18781 tcctacggtg atcgcctgct gattgatgac ctgagcttct cgatcccgaa aggggcaatc
    18841 gtcgggatca tcggtccgaa cggcgcgggt aaatcgaccc tgttccgtat gatctctggt
    18901 caggaacagc cggacagcgg caccatcact ttaggtgaaa cggtgaaact ggcatcggtt
    18961 gatcagttcc gtgactcaat ggataacagc aaaaccgttt gggaagaagt ttccggcggg
    19021 ctggatatta tgaagatcgg caacaccgag atgccaagcc gcgcctacgt tggccgcttt
    19081 aactttaaag gggttgatca gggtaaacgc gttggtgaac tttccggtgg tgagcgcggt
    19141 cgtctgcatc tggcgaagct gctgcaggtt ggcggcaaca tgctgctgct cgacgaacca
    19201 accaacgacc tggatatcga aaccctgcgc gcgctggaaa acgccctgct ggagttcccg
    19261 ggctgtgcga tggttatctc gcacgaccgt tggttcctcg accgtatcgc cacgcacatc
    19321 ctggactacc aggatgaagg taaagttgag ttcttcgaag gtaactttac tgagtacgaa
    19381 gagtacaaga aacgcacgct gggcgcagac gcactggagc cgaagcgtat caagtacaag
    19441 cgtattgcga agtaatgcgt aaaatgccgg atgcggcgtg aacgccttat ccggcctaca
    19501 aaccaagaaa tttcaatacg ttgtgaatct ccaggcctga taagacgcgg taagcgtcgc
    19561 atcaggcatt gagcaccgaa tgccggatac ggcgtgaacg ccttttccgg cctacaatag
    19621 ccttagtatc cgcaatttcg tagcgggtca cccgtgctga ttcttttaaa ccttgtttaa
    19681 tctcgacagc ctcttccaga gaggttttca actcatcaaa aaacctattt tatacctcgc
    19741 ctttgagccg tttcatcgcg gttatctctg ctcccccatc atctcccgca ccagctccac
    19801 gcagcgcagg aaacggctgt cataatcgtc ctcttcaacc cgcacgaatt cgatattgtt
    19861 ctcttccagc atctccacca gcaagttctg gaactctttg cgatccaccg aactgccgag
    19921 gctgcgtaaa ccatccgcca cccacggcgt gttgttctcc agcaggatca ccagatcgaa
    19981 acggtattca tcaatcaacg cctgtacgaa cggatgctca cgcccttcgt actttttgca
    20041 gaacgcctgg gtagtgacaa aatcagtgtc aataaacgcc actttattgg catatttcac
    20101 tgcaaaatca atgtattgtg cgtggcccag cgcgatttta tcgtaatcgg aatactgcaa
    20161 tgcgatctca tcaccgccga ggtgtgaaaa gacataatcg cgaccatatt cccacgcact
    20221 ggtggtattg aagatattgg caagtttgtt taccagggtg gatttaccgc tcgactcgcc
    20281 accaaggatc gccacggtac gtacaaagaa cggcttcact tccgtaggaa tatattccca
    20341 gtagcggaac gggttttcgc ggatctgcgc accgctgata ctcataaagg tacgtttcgg
    20401 atcgaccagc accgtatcga tccccagatg ttccatatac tgtggcgcat cggcttcttc
    20461 cgaggtgtag atcaggtccg gctgaatccc cttttcagcc ataaactttt tgatgccgtt
    20521 gctccacaca tcccagccgt gcggatacgg ctccatgccc tcctcgttga aagcatgaat
    20581 gcgaatattt ttctgatatt taaaagtttg taataaccag cgcagacgat ccggcaccgt
    20641 gggctgctgc gacatggcgc tgtcttcaaa caacgcgcgg tcgcgggtat cgtcaaaacc
    20701 cataatgata tgcagctcgt caacctggct acaggcgcgc tggataaggt agatatgtcc
    20761 ggtatgcagc gggtagaact taccgaatac gacaccaatg gttttcttct gtcggggaaa
    20821 ttcaagcccc aaaaaacggt gcaacgcctc cagcttttgc gcgctggggc ttttaatttt
    20881 ggcattcagt aactggctta aatacccttt ggtcataccg ctggcatcag ctacctgctg
    20941 tagcgtgcag ccctgttgct tgatggcagt tttcaggtaa tcaaatgacg acatatctcc
    21001 ctccgtatct ctcattataa gtcgtcgaac acgctaagcg cgtcggagag ttttttaacg
    21061 ccaaaaatct gcatcccttc cggcgctttt ttcggtacgt tagccgccgg aacaatcgcc
    21121 cggcgaaaac cgtgtttcgc cgcttctgaa attcgttcct gaccgctggg caccgggcgg
    21181 atctcccctg ccagcccgac ttcaccaaac accaccagat cctgtggcag cggtctgtca
    21241 cgcaggctgg aaaccatcgc cagcagtaac gctaaatcgg cactggtttc ggttaccttc
    21301 acgccgccga ccacgttcac aaatacatcc tgatcggcca tttgcagacc accgtgacgg
    21361 tgcaagacag ccagcaggat tgccagacgg ttttgttcca gccccactgc cacgcggcgc
    21421 ggattcgcca tcatcgagtg atcgaccagc gcctgaatct ccaccagcaa cggacgcgtt
    21481 ccttcccaca ccaccatcac ggagctgccg gaggtcactt catctccgcg acttaagaaa
    21541 attgccgaag ggttgctgac ttcacgcagc ccctgttcgg tcatcgcgaa gacgcccagc
    21601 tcattcaccg cgccgaagcg gtttttatgg ctgcgcaagg tgcgaaaacg ggagtcggca
    21661 tcaccatcca gaagcaccga acagtcgata cagtgttcca gcactttagg gccagccagc
    21721 gagccatctt tggttacgtg cccaaccatg acaatcgcca caccgcgcgt tttggcgaag
    21781 cgcgtcagat aagccgccgt ttcacgcacc tgcgccacgc taccaggcga tgattgtaca
    21841 tccgccatat gcatcacctg gatcgagtca attaccatca gtttcggttg ctcttcttcg
    21901 gcaatcaggc agatctgttc gatgctggtt tccgacaaca tattgagatt gtcagtcggc
    21961 aggccaaggc gatgagcgcg cattgccacc tgttgcagcg actcttcgcc agtgacatac
    22021 agcgttttca tctgctgggc cagtttgcac agcgtttgca gtagcagcgt ggatttcccc
    22081 gcacctgggt taccgccaat cagaatggcg cttcccggca ccacgccgcc gcctagtacg
    22141 cggtcgaact ctttaaatcc ggtggaaaaa cgcggcagct cttcaaggct gatatcggag
    22201 agtttctgga cttttgccac cccggcgcta ccggcatagc cgctgagacg ctcgttacgc
    22261 gccaccgttg gcgacgcagc aagacgcacc tcggtgatgg tgttccaggc atgacaggca
    22321 ctgcactgcc cctgccagcg cggataatcg gccccgcatt cattacaaac aaaggcgcgt
    22381 tttggagctt ttgccacggt gtacctcgtt aatgctgtgc cgcccgcagg atggcgggcg
    22441 agcaattact tctgattcag gctgccagag aggatgcaga atacccccat caggtcagcg
    22501 tgacggatgg tgacttccgc cttttcattc acttttggct tggcatggta ggcaatcccc
    22561 agccctgctg ctttgatcat cggcaggtca ttagctccat cgccaatcgc cacggtctgc
    22621 gccagcggga tttcatactc ctgcgcgagg cgagtcaaag ttttcgcttt gtactgcgcg
    22681 tctacgatgt cgccgatcac attgccggta aatttaccgt ccatgatctc cagttcattg
    22741 gctaccacgg cggtcaggcg cagcttgtcg cgcagatatt cagcaaagaa agtaaagccg
    22801 ccggaggcaa tcgccacttt ccagcccagc gtttccagct tgagcaccag ttgcgttaag
    22861 cctggcatca gcggcagatt ttcacgcacc tgttgcagaa tattggcgtc agcgcctttc
    22921 agcgtcgcca cacggctgcg caggctggcg gtaaaatcga gttcgccgcg catcgcccgt
    22981 tcggttactt ccgccaccat ctcgcccgtt ccggccagtt tggcaatttc atcaatacat
    23041 tcaatctgga tggcggtgga atccatgtcc atcaccagca aacccggcgt gcgcaggtgc
    23101 gggattttcc ccagcggggc gacatccagt tgcgcttcat gggccaggcg cgtagcccgt
    23161 gcggtgagtg aacctgccag acgaatcacc tgataatctt ccacgcacca ggcggcaaca
    23221 atcaccatcg ccgcacccag tttgctctgg tattgggtca gacgctgttt atccagccca
    23281 cgaccataca gcagccagcc gctacgacct gcgtggtaat ccagtggcat cacttcatca
    23341 ccacttaatg aaagaggcag accaggccat aaagagacat cttcaggcag gtcgcaccag
    23401 gtaatgttag gcattaagga tcctgtaaaa tcgttcgaag cagggaaaat aacgcatgag
    23461 gctaccttgt atccattgct tctggcaaca ttaagtctca aattttcaaa gggtggaaga
    23521 tggctcgcac aaaactgaaa ttccggctgc atcgggcagt gattgtcctg ttctgtcttg
    23581 ccttgttagt ggcgctgatg cagggagcgt catggtttag tcaaaaccac cagcgacaac
    23641 gtaatccaca gctggaagaa ctggcccgca ccctggcgcg tcaggtaacg ctgaacgttg
    23701 caccgctgat gcgtaccgac tcaccggatg aaaaacgcat tcaggcgatc ctcgatcagt
    23761 taacggatga aagccgtatc ctcgacgcgg gtgtgtatga cgaacaaggc gatcttatcg
    23821 cacgttctgg cgaaagcgtc gaagtgcgcg accggctggc gctcgacacc catacgctcg
    23881 ccaccgaagc ccaacaggtg gataacacca ctaacatttt acgcctgatg ttgctgcttt
    23941 cactggcaat cggcgtagtg ctgacccgca cgctgctaca gggtaaacgt acccgctggc
    24001 agcaatcgcc cttcctgtta accgccagca aaccggtgcc ggaagaggaa gaaagcgaga
    24061 aaaaagagtg acccattact acaagaaagg aaatcgttat gtccacatta cgcctgctca
    24121 tctctgactc ttacgacccg tggtttaacc tggcggtgga ggagtgtatt tttcgccaga
    24181 tgcccgccac gcagcgcgtt ctgtttctct ggcgcaatgc cgacacggta gtgattggtc
    24241 gcgcgcagaa cccgtggaaa gagtgtaata cccggcggat ggaagaagat aacgtccgcc
    24301 tggcacggcg cagtagcggt ggcggcgcgg tgttccacga tctcggcaat acctgcttta
    24361 cctttatggc tggcaagccg gagtacgata aaaccatctc cacgtcgatt gtgctcaatg
    24421 cgctgaacgc gcttggcgtc agcgccgaag cgtccgggcg taacgatctg gtggtgaaaa
    24481 ccgccgaagg cgaccgcaaa gtctcaggat cggcctatcg cgaaaccaaa gatcgtggct
    24541 tccaccacgg caccttgctg ctcaatgccg accttagccg cctggcaaac tatctcaatc
    24601 cggataaaaa gaaactggcg gcgaaaggca ttacctcagt gcgttcccgc gtgaccaacc
    24661 tcaccgagct gctgccgggg atcacccatg agcaggtttg cgaggccata accaaggcct
    24721 ttttcgccca ttatggcgag cgtgtagaag cggaaatcat ctccccggac aaaacgccag
    24781 acttgccaaa cttcgccgaa atctttgccc gtcagagtag ctgggaatgg aacttcggtc
    24841 aggctccggc attctcgcat ctgctggatg aacgctttag ctggggcggc gtggaactgc
    24901 atttcgacgt tgaaaaaggc catatcaccc gcgcccaggt gtttaccgac agcctcaacc
    24961 ccgcgccgct ggaagccctc gccgggcgac tgcaaggctg cctgtaccgc gcggatatgc
    25021 tgcaacaaga gtgcgaagcg ctgttggttg acttcccgga ccaggaaaaa gagctacggg
    25081 agttgtcgac gtggatagcg ggggcggtaa ggtaactcgc tgattaaaat accaaaggaa
    25141 gggaatatga tcgatctgga aaaccaggag cgggagatta tcaatttaat gttaagccag
    25201 cgtatttcct ggctagccgc cgtgcgtatc aggcataaat tatcgcttgc tgaagtaagt
    25261 aaaatgttag gtatctcgat taattctcta aaatagatcg aaaagacgga acggtttagc
    25321 tcaaacatca aaagcaaaat ggcagaaatt tatggttgtc caccagagtt gctgatatgc
    25381 ccttcctgga tgacggctga acataaatga atagatt
//
LOCUS       DAJVSY010000045        25242 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.045, whole genome shotgun sequence.
ACCESSION   DAJVSY010000045 DAJVSY010000000
VERSION     DAJVSY010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25242)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25242)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25242
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.045"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..403)
                     /locus_tag="OQQ19_001674"
     CDS             complement(<1..403)
                     /locus_tag="OQQ19_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HCS1803338.1"
                     /translation="MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFY
                     QVCHPDGLADALWGTIVGYGTFAVIYWGYRILRHKEGLGYGDVKFLAALGAWHSWAFL
                     PRLVFLAASFACGAVVIGLLMRGKESLKNPLP"
     gene            782..1093
                     /gene="rpsJ"
                     /locus_tag="OQQ19_001675"
     CDS             782..1093
                     /gene="rpsJ"
                     /locus_tag="OQQ19_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HCS1803339.1"
                     /translation="MQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPT
                     RKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL
                     G"
     gene            1126..1755
                     /gene="rplC"
                     /locus_tag="OQQ19_001676"
     CDS             1126..1755
                     /gene="rplC"
                     /locus_tag="OQQ19_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000579825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HCS1803340.1"
                     /translation="MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDG
                     YRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFA
                     DVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKK
                     MAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAVKA"
     gene            1766..2371
                     /gene="rplD"
                     /locus_tag="OQQ19_001677"
     CDS             1766..2371
                     /gene="rplD"
                     /locus_tag="OQQ19_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HCS1803341.1"
                     /translation="MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTR
                     AQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYR
                     GALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLA
                     ARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA"
     gene            2368..2670
                     /gene="rplW"
                     /locus_tag="OQQ19_001678"
     CDS             2368..2670
                     /gene="rplW"
                     /locus_tag="OQQ19_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007891652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HCS1803342.1"
                     /translation="MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIK
                     AAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE"
     gene            2688..3509
                     /gene="rplB"
                     /locus_tag="OQQ19_001679"
     CDS             2688..3509
                     /gene="rplB"
                     /locus_tag="OQQ19_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HCS1803343.1"
                     /translation="MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRN
                     NNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERR
                     YILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGT
                     YVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRP
                     TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK"
     gene            3526..3804
                     /gene="rpsS"
                     /locus_tag="OQQ19_001680"
     CDS             3526..3804
                     /gene="rpsS"
                     /locus_tag="OQQ19_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HCS1803344.1"
                     /translation="MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNM
                     IGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK"
     gene            3819..4151
                     /gene="rplV"
                     /locus_tag="OQQ19_001681"
     CDS             3819..4151
                     /gene="rplV"
                     /locus_tag="OQQ19_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HCS1803345.1"
                     /translation="METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAA
                     VLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSH
                     ITVVVSDR"
     gene            4169..4870
                     /gene="rpsC"
                     /locus_tag="OQQ19_001682"
     CDS             4169..4870
                     /gene="rpsC"
                     /locus_tag="OQQ19_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HCS1803346.1"
                     /translation="MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLT
                     KELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN
                     IAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGA
                     EIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPE
                     KPAAQPKKQQRKGRK"
     gene            4883..5293
                     /gene="rplP"
                     /locus_tag="OQQ19_001683"
     CDS             4883..5293
                     /gene="rplP"
                     /locus_tag="OQQ19_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HCS1803347.1"
                     /translation="MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTAR
                     QIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVL
                     YEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM"
     gene            5293..5484
                     /gene="rpmC"
                     /locus_tag="OQQ19_001684"
     CDS             5293..5484
                     /gene="rpmC"
                     /locus_tag="OQQ19_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000644743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HCS1803348.1"
                     /translation="MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLK
                     QVRRDVARVKTLLNEKAGA"
     gene            5484..5738
                     /gene="rpsQ"
                     /locus_tag="OQQ19_001685"
     CDS             5484..5738
                     /gene="rpsQ"
                     /locus_tag="OQQ19_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006817275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HCS1803349.1"
                     /translation="MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKL
                     HVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL"
     gene            5903..6274
                     /gene="rplN"
                     /locus_tag="OQQ19_001686"
     CDS             5903..6274
                     /gene="rplN"
                     /locus_tag="OQQ19_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015817037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HCS1803350.1"
                     /translation="MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIK
                     EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGP
                     VTRELRSEKFMKIISLAPEVL"
     gene            6285..6599
                     /gene="rplX"
                     /locus_tag="OQQ19_001687"
     CDS             6285..6599
                     /gene="rplX"
                     /locus_tag="OQQ19_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000729185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HCS1803351.1"
                     /translation="MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKK
                     HQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSET
                     IK"
     gene            6614..7153
                     /gene="rplE"
                     /locus_tag="OQQ19_001688"
     CDS             6614..7153
                     /gene="rplE"
                     /locus_tag="OQQ19_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HCS1803352.1"
                     /translation="MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAI
                     ADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER
                     LITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA
                     KSDEEGRALLAAFDFPFRK"
     gene            7168..7473
                     /gene="rpsN"
                     /locus_tag="OQQ19_001689"
     CDS             7168..7473
                     /gene="rpsN"
                     /locus_tag="OQQ19_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HCS1803353.1"
                     /translation="MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNA
                     VLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW"
     gene            7507..7899
                     /gene="rpsH"
                     /locus_tag="OQQ19_001690"
     CDS             7507..7899
                     /gene="rpsH"
                     /locus_tag="OQQ19_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HCS1803354.1"
                     /translation="MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEG
                     FIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIA
                     VVSTSKGVMTDRAARQAGLGGEIICYVA"
     gene            7912..8445
                     /gene="rplF"
                     /locus_tag="OQQ19_001691"
     CDS             7912..8445
                     /gene="rplF"
                     /locus_tag="OQQ19_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HCS1803355.1"
                     /translation="MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVK
                     HADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNV
                     INLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGK
                     GVRYADEVVRIKEAKKK"
     gene            8455..8808
                     /gene="rplR"
                     /locus_tag="OQQ19_001692"
     CDS             8455..8808
                     /gene="rplR"
                     /locus_tag="OQQ19_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HCS1803356.1"
                     /translation="MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNG
                     SEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGR
                     VQALADAAREAGLQF"
     gene            8823..9326
                     /gene="rpsE"
                     /locus_tag="OQQ19_001693"
     CDS             8823..9326
                     /gene="rpsE"
                     /locus_tag="OQQ19_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004106339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HCS1803357.1"
                     /translation="MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNG
                     RVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEG
                     TGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKS
                     VEEILGK"
     gene            9330..9509
                     /gene="rpmD"
                     /locus_tag="OQQ19_001694"
     CDS             9330..9509
                     /gene="rpmD"
                     /locus_tag="OQQ19_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012147215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HCS1803358.1"
                     /translation="MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAI
                     RGMINAVSFMVKVEE"
     gene            9513..9947
                     /gene="rplO"
                     /locus_tag="OQQ19_001695"
     CDS             9513..9947
                     /gene="rplO"
                     /locus_tag="OQQ19_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011095501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HCS1803359.1"
                     /translation="MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGG
                     GVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIG
                     IQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE"
     gene            9955..11286
                     /gene="secY"
                     /locus_tag="OQQ19_001696"
     CDS             9955..11286
                     /gene="secY"
                     /locus_tag="OQQ19_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004868351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HCS1803360.1"
                     /translation="MAKQPGLDFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGI
                     DAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLLTVVHPTL
                     AEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTA
                     VVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFL
                     VLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIP
                     AIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTA
                     LVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMR
                     DAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKANLKGYGR"
     gene            11318..11434
                     /gene="rpmJ"
                     /locus_tag="OQQ19_001697"
     CDS             11318..11434
                     /gene="rpmJ"
                     /locus_tag="OQQ19_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020322760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HCS1803361.1"
                     /translation="MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG"
     gene            11581..11937
                     /gene="rpsM"
                     /locus_tag="OQQ19_001698"
     CDS             11581..11937
                     /gene="rpsM"
                     /locus_tag="OQQ19_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019935869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HCS1803362.1"
                     /translation="MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVK
                     ISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRT
                     KTNARTRKGPRKPIKK"
     gene            11954..12343
                     /gene="rpsK"
                     /locus_tag="OQQ19_001699"
     CDS             11954..12343
                     /gene="rpsK"
                     /locus_tag="OQQ19_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HCS1803363.1"
                     /translation="MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGW
                     ATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNA
                     AGFRITNITDVTPIPHNGCRPPKKRRV"
     gene            12377..12997
                     /gene="rpsD"
                     /locus_tag="OQQ19_001700"
     CDS             12377..12997
                     /gene="rpsD"
                     /locus_tag="OQQ19_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HCS1803364.1"
                     /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR
                     KPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVV
                     YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE
                     LAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK"
     gene            13023..14012
                     /gene="rpoA"
                     /locus_tag="OQQ19_001701"
     CDS             13023..14012
                     /gene="rpoA"
                     /locus_tag="OQQ19_001701"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HCS1803365.1"
                     /translation="MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALR
                     RILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTL
                     NKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIH
                     SEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIR
                     RAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIH
                     YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIADE"
     gene            14053..14436
                     /gene="rplQ"
                     /locus_tag="OQQ19_001702"
     CDS             14053..14436
                     /gene="rplQ"
                     /locus_tag="OQQ19_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HCS1803366.1"
                     /translation="MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKEL
                     RRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGF
                     RAGDNAPMAYIELVDRSEKAEAAAE"
     gene            14543..14911
                     /locus_tag="OQQ19_001703"
     CDS             14543..14911
                     /locus_tag="OQQ19_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1992 domain-containing protein"
                     /protein_id="HCS1803367.1"
                     /translation="MWLLDQWAERHIAEAQAKGEFDNLAGSGEPLILDDDSHVPPELR
                     AGYRLLKNAGCLPPELEQRREAIQLLDILRGIRHDDPQYQEVSRRLSLLELKLRQAGF
                     STDFLRGDYADKLLDKINDN"
     gene            14922..15347
                     /gene="zntR"
                     /locus_tag="OQQ19_001704"
     CDS             14922..15347
                     /gene="zntR"
                     /locus_tag="OQQ19_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(2+)-responsive transcriptional regulator"
                     /protein_id="HCS1803368.1"
                     /translation="MYRIGELAKMAEVTPDTIRYYEKQQMMEHEVRTEGGFRLYTESD
                     LQRLKFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQS
                     MQRSLQRLNDACCGTAHSSVYCSILEALEQGASGVKSGC"
     gene            15403..15621
                     /gene="arfA"
                     /locus_tag="OQQ19_001705"
     CDS             15403..15621
                     /gene="arfA"
                     /locus_tag="OQQ19_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome-rescue factor ArfA"
                     /protein_id="HCS1803369.1"
                     /translation="MSRYQHTKGQIRDNAIEALLHDPLFRQRVEKNKKGKGSYMRKGK
                     HGNRGNWEASGKKVNHFFTTGLLLSGAC"
     gene            complement(15618..16028)
                     /gene="mscL"
                     /locus_tag="OQQ19_001706"
     CDS             complement(15618..16028)
                     /gene="mscL"
                     /locus_tag="OQQ19_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HCS1803370.1"
                     /translation="MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPP
                     LGLLIGGIDFKQFAVTLRDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKL
                     NRKKEEPAAAPAPTKEEVLLAEIRDLLKEQNNRS"
     gene            complement(16158..17534)
                     /gene="trkA"
                     /locus_tag="OQQ19_001707"
     CDS             complement(16158..17534)
                     /gene="trkA"
                     /locus_tag="OQQ19_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004125888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HCS1803371.1"
                     /translation="MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFD
                     LRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSP
                     DYVRDADKLFHSDAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKA
                     YYGGPLIGNALSTMREHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHI
                     RAVMSELQRLEKPYKRIMLVGGGNIGAGLARRLEKDYSVKLIERNQQRAAELAEKLQN
                     TIVFFGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRA
                     YVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTS
                     RVVGRVIDEIKLPPGTIIGAVVRGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERL
                     FQPSPFFL"
     gene            complement(17556..18845)
                     /gene="rsmB"
                     /locus_tag="OQQ19_001708"
     CDS             complement(17556..18845)
                     /gene="rsmB"
                     /locus_tag="OQQ19_001708"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HCS1803372.1"
                     /translation="MKKQRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALL
                     QELCFGVLRTLSQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAET
                     VEGAIAIKRPQLKGLINGVLRQFQRQQEELLAKFNASDARYLHPSWLLKRLQKAYPEQ
                     WQSIVEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVH
                     ALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAV
                     DIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH
                     PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQR
                     TADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIKK"
     gene            complement(18891..19838)
                     /gene="fmt"
                     /locus_tag="OQQ19_001709"
     CDS             complement(18891..19838)
                     /gene="fmt"
                     /locus_tag="OQQ19_001709"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HCS1803373.1"
                     /translation="MSESLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRG
                     KKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVADLQADVMVVVAYGLILPKAVLEM
                     PRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPIT
                     AEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWS
                     LSAAQLERYIRAFNPWPMSWLEIERQPVKVWKASVIDTATNAAPGTILEANKQGIQVA
                     TGDGILNLLSLQPAGKKAMSAQDLLNSRREWFVPGNRLA"
     gene            complement(19853..20362)
                     /gene="def"
                     /locus_tag="OQQ19_001710"
     CDS             complement(19853..20362)
                     /gene="def"
                     /locus_tag="OQQ19_001710"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HCS1803374.1"
                     /translation="MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEG
                     IGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVP
                     RAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVE
                     KLDRLKARA"
     gene            20492..21616
                     /gene="dprA"
                     /locus_tag="OQQ19_001711"
     CDS             20492..21616
                     /gene="dprA"
                     /locus_tag="OQQ19_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HCS1803375.1"
                     /translation="MVDTDIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGL
                     TLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSEFYPPQLLATTDYPGALFVEGEL
                     YALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
                     GVSIAVLGNGLNTIHPRRHARLATSLLEHGGALVSEFPLDVSPLAYNFPRRNRIISGL
                     SKGVLVVEAALRSGSLVTARCALEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEP
                     EEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQP
                     VPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV"
     gene            21588..22061
                     /locus_tag="OQQ19_001712"
     CDS             21588..22061
                     /locus_tag="OQQ19_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF494 domain-containing protein"
                     /protein_id="HCS1803376.1"
                     /translation="MFDVLMYLFETYIHTEAELRVDQDKLEQDLTDAGFDREDIYNAL
                     LWLEKLADYQEGLTEPMQLASDPLSMRIYTPEECERLDASCRGFLLFLEQIQVLNLEI
                     REMVIERVLALDTAEFDLEDLKWVILMVLFNIPGCENAYQQMEELLFEVNEGMLH"
     gene            22090..22632
                     /locus_tag="OQQ19_001713"
     CDS             22090..22632
                     /locus_tag="OQQ19_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="HCS1803377.1"
                     /translation="MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYV
                     RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCSNYPECEHTELIDKPDET
                     AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKT
                     AQGVKHFCASKQCGKPVSAE"
     gene            22637..23209
                     /gene="tsaC"
                     /locus_tag="OQQ19_001714"
     CDS             22637..23209
                     /gene="tsaC"
                     /locus_tag="OQQ19_001714"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase type 1
                     TsaC"
                     /protein_id="HCS1803378.1"
                     /translation="MNNNLQGDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVM
                     RLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPAT
                     TPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGA
                     AFPVVLGETGGRLNPSEIRDALTGELFRQG"
     gene            23214..24032
                     /gene="aroE"
                     /locus_tag="OQQ19_001715"
     CDS             23214..24032
                     /gene="aroE"
                     /locus_tag="OQQ19_001715"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709069.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HCS1803379.1"
                     /translation="METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFI
                     NTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLKRLEDGRLQGDNTD
                     GIGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK
                     LFAHTGSIQALGMDELEGHEFDLIINATSSGISGDIPAIPSSLIHLGIYCYDMFYQKG
                     KTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEELSA"
     gene            24029..24286
                     /locus_tag="OQQ19_001716"
     CDS             24029..24286
                     /locus_tag="OQQ19_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1488 domain-containing protein"
                     /protein_id="HCS1803380.1"
                     /translation="MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRF
                     TGDTPEQWLASFRQHRWDLEEEAENLIQEQSEDDQGWVWLP"
     gene            complement(24262..24816)
                     /locus_tag="OQQ19_001717"
     CDS             complement(24262..24816)
                     /locus_tag="OQQ19_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HCS1803381.1"
                     /translation="MSDVLRPYRDLFPQIGQRVMIDDSSVVIGGVRLADDVGIWPLVV
                     IRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGN
                     RVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAG
                     LRYSANNYVKWKDEYLDQGNQTQP"
BASE COUNT         6456 a         5996 c         6571 g         6219 t
ORIGIN      
        1 aaggcagcgg gttttttaat gattcttttc ctctcatgag cagaccaata actacggctc
       61 cgcaagcgaa tgaggcagca aggaaaacca gtcgtggtaa gaaggcccat gaatgccagg
      121 cgccaagggc ggcgagaaac ttcacatcac catagcctaa tccttcttta tgtcgcagta
      181 tgcgataccc ccagtaaatg acagcgaatg tgccgtaacc aacaattgtc ccccataacg
      241 catcggctaa accatcagga tgacaaactt gatagaacaa aagacctgac cagagtaacg
      301 ggcacgtaaa tctgtcaggt aacaagccat gctttgcatc ccagaaaaaa agtagggctg
      361 ataaacaagc gtacaaaatc agaaagggaa gggtagtgtc cataaaacat cctctgtaat
      421 tggagtatca ccatcgaata actccggatg ctcagcaaca gagagagcgc tgatttgtta
      481 acctgattcc ggtgaaaaac gctatcttca caaccttaca aatttcgtgg aatgcagctc
      541 gcaatctgcg cgttgcgatt aatttctacc cgatgcttgc gtcaggctca gatttgcgta
      601 taatgcgcgg gcttgtcgta gttgacagca ggttcaatct gaacctcagt tagccgaatt
      661 tggctaccta acaatgctcc caatcgggga gctacgtaag aacggttaca ctctcccatc
      721 aatcgtaatg ggtctgagga gtaatcattt tcgtttataa aataattgga gctctggtct
      781 catgcagaac caaagaatcc gtatccgcct gaaagcgttt gatcatcgtc tgatcgatca
      841 agcaaccgcg gaaatcgtcg agactgccaa gcgcactggt gcgcaggtcc gtggtccgat
      901 cccgctgccg acacgcaaag agcgcttcac tgttctgatc tccccgcacg tcaacaaaga
      961 cgcgcgcgat cagtacgaaa tccgtactca cttgcgtctg gttgacatcg ttgagccaac
     1021 cgagaaaacc gttgatgctc tgatgcgtct ggatctggct gccggtgtag acgtgcagat
     1081 cagcctgggt taatcaggtc attgagcgat tgagaggttg aaacaatgat tggtttagtc
     1141 ggtaaaaaag tgggtatgac ccgtatcttc acagaagacg gcgtttctat cccagtaacc
     1201 gtaatcgaag ttgaagcaaa ccgcgttact caggttaaag acctggctaa cgatggctac
     1261 cgtgctattc aggtgaccac cggtgctaaa aaagctaacc gtgtgaccaa gcctgaagct
     1321 ggccacttcg ctaaagctgg cgtagaagct ggccgtggtc tgtgggaatt ccgcctggct
     1381 gaaggcgaag agttcactgt aggtcagagc attagcgttg aactgtttgc tgacgttaaa
     1441 aaagttgacg taactggcac ctctaaaggt aaaggtttcg caggtaccgt taagcgctgg
     1501 aacttccgta cccaggacgc tactcacggt aactccttgt ctcaccgcgt tccgggttct
     1561 atcggtcaga accagactcc gggcaaagtg ttcaaaggca agaaaatggc aggtcagatg
     1621 ggtaacgaac gtgtaaccgt tcagagcctt gacgtagtac gcgttgacgc tgagcgcaac
     1681 ctgctgctgg ttaaaggtgc tgtcccgggt gcaaccggta gcgacctgat cgttaaacca
     1741 gctgtgaagg cgtaaggaga tagcaatgga attagtattg aaagacgcgc agagcgcgct
     1801 gactgtttcc gaaactacct tcggtcgtga tttcaacgaa gcgctggttc accaggttgt
     1861 tgttgcttat gcagctggtg ctcgtcaggg tactcgtgct cagaagactc gtgctgaagt
     1921 aactggttcc ggtaaaaaac cgtggcgcca gaaaggcacc ggccgtgcgc gttctggttc
     1981 tatcaagagc ccgatctggc gttctggtgg cgtgaccttt gctgctcgtc cgcaggacca
     2041 cagtcaaaaa gttaacaaga agatgtaccg cggcgcgctg aaaagcatcc tgtccgaact
     2101 ggtacgtcag gatcgtctga tcgttgtcga gaagttctct gtagaagcgc cgaaaactaa
     2161 gctgctggca cagaaactga aagacatggc tctggaagat gtgctgatca tcaccggtga
     2221 gctggacgaa aacctgttcc tggctgcgcg caacctgcac aaggttgacg tacgcgatgc
     2281 aactggtatc gacccggtta gcctgatcgc cttcgacaaa gtcgtaatga ctgctgatgc
     2341 tgttaagcaa gttgaggaga tgctggcatg attcgtgaag aacgtctgct gaaggtgctg
     2401 cgtgcaccgc acgtttctga aaaagcgtct actgcgatgg aaaaatccaa caccatcgta
     2461 ctcaaagttg ctaaagacgc gaccaaagca gaaatcaaag ctgctgtgca gaaactgttt
     2521 gaagtcgaag tcgaagtcgt taacaccctg gtagttaaag ggaaagttaa acgtcacgga
     2581 cagcgtatcg gtcgtcgtag cgactggaaa aaagcttacg tcaccctgaa agaaggccag
     2641 aatctggact tcgttggcgg cgctgagtaa gtcggaggag taatacaatg gcagttgtta
     2701 aatgtaaacc gacatctccg ggtcgtcgcc acgtagttaa agtggttaac cctgagctgc
     2761 acaagggcaa accttttgct ccgttgctgg aaaaaaacag caaatccggt ggtcgtaaca
     2821 acaatggccg tatcaccact cgtcatatcg gtggtggcca caagcaggct taccgtattg
     2881 ttgacttcaa acgcaacaaa gacggtatcc cggcagttgt tgaacgtctt gagtacgatc
     2941 cgaaccgttc cgcgaacatc gcgctggttc tgtacaaaga cggtgaacgc cgttacatcc
     3001 tggcccctaa aggcctgaaa gctggcgacc agattcagtc tggcgttgat gctgcaatca
     3061 aaccaggtaa caccctgccg atgcgcaaca tcccggttgg ttctactgtt cataacgtag
     3121 aaatgaaacc aggtaaaggc ggtcagctgg cacgttccgc tggtacttac gttcagatcg
     3181 ttgctcgtga tggtgcttat gtcaccctgc gtctgcgttc tggtgaaatg cgtaaagtag
     3241 aagcagactg ccgtgcaact ctgggcgaag ttggcaatgc tgagcatatg ctgcgcgttc
     3301 tgggtaaagc aggtgctgca cgctggcgtg gtgttcgtcc gaccgttcgc ggtaccgcga
     3361 tgaacccggt agaccaccca catggtggtg gtgaaggtcg taactttggt aagcacccgg
     3421 taactccgtg gggcgttcag accaaaggta agaagacccg cagcaacaag cgtactgata
     3481 aattcatcgt acgtcgccgt agcaaataat tttagaggat aagccatgcc acgttctctc
     3541 aagaaaggtc cttttattga cctgcacttg ctgaagaagg tagagaaagc ggtggaaagc
     3601 ggagacaaga agcccctgcg cacttggtcc cgtcgttcaa cgatctttcc taacatgatc
     3661 ggtttgacca tcgctgtcca taatggtcgt cagcacgttc cggtatttgt aaccgacgaa
     3721 atggtcggtc acaaactggg tgaattcgca ccgactcgta cttatcgcgg ccacgctgct
     3781 gataaaaaag cgaagaagaa ataaggtagg aggaagagat ggaaactatc gctaaacatc
     3841 gccatgctcg ttcttctgct cagaaggttc gccttgttgc tgacctgatt cgcggtaaga
     3901 aagtgtcgca ggctctggat attttgacct acaccaacaa gaaagcggct gtactggtca
     3961 agaaagttct ggaatctgcc attgctaacg ctgaacacaa cgatggcgct gacattgacg
     4021 atctgaaagt tacgaaaatt ttcgtagacg aaggcccgag catgaagcgc attatgccgc
     4081 gtgcaaaagg tcgtgcagat cgcatcctga agcgcaccag ccacatcact gtggttgtgt
     4141 ccgatcgctg agactctgga gactagcaat gggtcagaaa gtacatccta atggtattcg
     4201 cctgggtatt gtaaaaccat ggaactctac ctggtttgcg aacaccaaag aattcgctga
     4261 caacctggac agcgatttta aagtacgtca gtacctgact aaggaactgg ctaaagcgtc
     4321 cgtatctcgt atcgttatcg agcgtccggc taagagcatc cgtgtaacca ttcacactgc
     4381 tcgcccgggt atcgttatcg gtaaaaaagg tgaagacgta gaaaaactgc gtaaggtcgt
     4441 agcggacatc gctggcgttc ctgcacagat caacatcgcc gaagttcgta agcctgaact
     4501 ggacgcaaaa ctggttgctg acagcatcac ttctcagctg gaacgtcgcg ttatgttccg
     4561 tcgtgctatg aagcgtgctg tacagaacgc aatgcgtctg ggcgctaaag gtattaaagt
     4621 tgaagttagc ggccgtctgg gcggcgcgga aatcgcacgt accgaatggt accgcgaagg
     4681 tcgcgtaccg ctgcacactc tgcgtgctga catcgactac aacacctctg aagcgcacac
     4741 cacttacggt gtaatcggcg ttaaagtgtg gatcttcaaa ggcgagatcc tgggtggtat
     4801 ggctgctgtt gaacaaccgg aaaaaccggc tgctcagcct aaaaagcagc agcgtaaagg
     4861 ccgtaaataa ggagcgtcgc tgatgttaca accaaagcgt acaaaattcc gtaaaatgca
     4921 caaaggccgt aaccgcggtc tggcgcaggg tacggatgtt agcttcggca gcttcggtct
     4981 gaaagctgtt ggccgtggtc gtctgactgc ccgtcagatc gaagcagcac gtcgtgctat
     5041 gacccgtgca gttaagcgtc aaggtaagat ctggatccgt gtgttcccgg acaaaccgat
     5101 cactgaaaag ccgctggcag tgcgtatggg taaaggtaaa ggtaacgtgg agtattgggt
     5161 tgccttgatt cagccgggta aagtcctgta tgaaatggac ggtgttccgg aagagctggc
     5221 ccgtgaagca ttcaagctgg cagcagcgaa actgccgatt aaaaccacct ttgtaactaa
     5281 gacggtgatg taatgaaagc aaaagagctg cgtgagaaga gcgttgaaga gctgaacacc
     5341 gagctgctga acctgctgcg tgagcagttc aacctgcgta tgcaggctgc aagtggccag
     5401 ctgcaacagt ctcacctgtt gaagcaagtg cgtcgcgatg tcgcacgcgt taagacttta
     5461 ctgaacgaga aggctggtgc gtaatgaccg ataaaatccg tactctgcaa ggtcgcgttg
     5521 ttagcgacaa aatggagaaa tccattgttg ttgctatcga acgttttgtg aaacacccga
     5581 tctacggtaa attcatcaag cgtacgacca aactgcacgt acatgacgag aacaacgaat
     5641 gcggtatcgg tgacgtggtt gaaatccgcg aatgccgtcc gctgtccaag actaaatcct
     5701 ggacgctggt tcgcgttgta gagaaagcgg ttctgtaata cagtacactc tctcgatacg
     5761 aataaacggc tcagaaatga gccgtttatt ttttctaccc atatccttga agcggtgtta
     5821 taatgccgcg ccctcgatat ggggattttt aacgacctga ttttcgggtc tcagtagtag
     5881 ttgacattag cggagcacta aaatgatcca agaacagact atgctgaacg tcgccgacaa
     5941 ctccggtgca cgtcgcgtaa tgtgtatcaa ggttctgggt ggctcgcacc gtcgctacgc
     6001 aggcgtaggc gacatcatca agatcaccat caaagaagca attccgcgtg gtaaggtcaa
     6061 aaaaggtgat gtgctgaagg cggtagtggt gcgcaccaag aagggtgttc gtcgcccgga
     6121 cggttctgtc attcgcttcg atggtaatgc ttgtgttctt ctgaacaaca acagcgagca
     6181 gcctatcggt acgcgtattt ttgggccggt aactcgtgag cttcgtagtg agaagttcat
     6241 gaaaattatc tctctggcac cagaagtact ctaaggagcg aatcatggca gcgaaaatcc
     6301 gtcgtgatga cgaagttatc gtgttaaccg gtaaagataa aggtaaacgc ggtaaagtta
     6361 agaatgtcct gtcttccggc aaggtcattg ttgaaggtat caacctggtt aagaaacatc
     6421 agaagccggt tccggccctg aaccaaccgg gtggcatcgt tgaaaaagaa gccgctattc
     6481 aggtttccaa cgtagcaatc ttcaatgcgg caaccggcaa ggctgaccgt gtaggcttta
     6541 gattcgaaga cggcaaaaaa gtccgtttct tcaagtctaa cagcgaaact atcaagtaat
     6601 ttggagtagt acgatggcga aactgcatga ttactacaaa gacgaagtag ttaaaaaact
     6661 catgactgag tttaactaca attctgtcat gcaagtccct cgggtcgaga agatcaccct
     6721 gaacatgggt gttggtgaag cgatcgctga caaaaaactg ctggataacg cagcagcaga
     6781 cctggcagca atctccggtc aaaaaccgct gatcaccaaa gcacgcaaat ctgttgcagg
     6841 cttcaaaatc cgtcagggct atccgatcgg ctgtaaagta actctgcgtg gcgaacgcat
     6901 gtgggagttc tttgagcgcc tgatcactat tgctgtacct cgtatccgtg acttccgtgg
     6961 cctgtccgct aagtctttcg acggtcgtgg taactacagc atgggtgtcc gtgagcagat
     7021 catcttccca gaaatcgact acgataaagt cgaccgcgtt cgtggtttgg atattaccat
     7081 taccactact gcgaaatctg acgaagaagg ccgcgctctg ctggctgcct ttgacttccc
     7141 gttccgcaag taaggtaggg ttactaaatg gctaagcaat caatgaaagc acgcgaagta
     7201 aaacgcgtag ctttagctga taaatacttc gcgaaacgcg ctgaactgaa agcgatcatc
     7261 tctgatgtga acgcttccga cgaagatcgt tggaacgctg ttctcaagct gcagactctg
     7321 ccgcgtgatt ccagcccgtc tcgtcagcgt aaccgctgcc gtcaaacagg tcgtccgcat
     7381 ggtttcctgc ggaagttcgg gttgagccgt attaaggtcc gtgaagccgc tatgcgcggt
     7441 gaaatcccgg gtctgaaaaa ggctagctgg taattgtcac caattgaatc acgggagtaa
     7501 agacagatga gcatgcaaga tccgatcgcg gatatgctga cccgtatccg taacggtcag
     7561 gccgcgaaca aagctgcggt caccatgcct tcctccaagc tgaaagtggc aatcgccaac
     7621 gtgctgaagg aagaaggttt tattgaagat tttaaagttg aaggcgacac caagcctgaa
     7681 ctggaactta ctctgaagta tttccagggc aaagctgttg tagaaagcat tcagcgtgtc
     7741 agccgcccag gtctgcgcat ctataaacgt aaagatgagc tgccgaaagt tatggcgggt
     7801 ctgggtatcg cagttgtttc tacctctaaa ggtgttatga ctgatcgtgc agcgcgccag
     7861 gctggtcttg gtggcgaaat tatctgctac gtagcctaat cggaggaaaa aatgtctcgt
     7921 gttgctaaag caccggtcgt tgttcctgcc ggcgttgacg taaaaatcaa cggtcaggtt
     7981 attacgatca aaggtaaaaa cggcgagctg actcgtactc tcaacgatgc tgttgaagtt
     8041 aaacatgcag ataataccct gaccttcggt ccgcgtgatg gttacgcaga cggttgggca
     8101 caggctggta ccgcgcgtgc cctgctgaac tcaatggtta tcggtgttac cgaaggcttc
     8161 actaagaagc tgcagctggt tggtgtaggt taccgtgcag cggttaaagg taatgtgatt
     8221 aacctgtctc tgggtttctc tcatcctgtt gaccatcagc tgcctgcggg tatcactgct
     8281 gaatgtccga ctcagactga aatcgtgctg aaaggcgctg ataagcaggt gatcggccag
     8341 gttgcagcgg atctgcgcgc ctaccgtcgt cctgagcctt ataaaggcaa gggtgttcgt
     8401 tacgccgacg aagtcgtgcg tatcaaagag gctaagaaga agtaaggtaa cactatggat
     8461 aagaaatctg ctcgtatccg tcgtgcgacc cgcgcacgcc gcaagctcca ggagctgggc
     8521 gcaactcgcc tggtggtaca tcgtaccccg cgtcacattt acgcacaggt aattgcaccg
     8581 aacggttctg aagttctggt agctgcttct actgtagaaa aagctatcgc tgaacaactg
     8641 aagtacaccg gtaacaaaga cgcggctgca gctgtgggta aagctgtcgc tgaacgcgct
     8701 ctggaaaaag gcatcaaaga tgtatccttt gaccgttccg ggttccaata tcatggtcgt
     8761 gtccaggcac tggcagatgc tgcccgtgaa gctggccttc agttctaagg tagaggtgta
     8821 agatggctca catcgaaaaa caagctggcg aactgcagga aaagctgatc gcggtaaacc
     8881 gcgtatctaa aaccgttaaa ggtggtcgta ttttctcctt cacagctctg actgtagttg
     8941 gcgatggtaa cggtcgcgtt ggttttggtt acggtaaagc gcgtgaagtt ccagcagcga
     9001 tccagaaagc gatggaaaaa gcccgtcgca atatgattaa cgtcgcgctg aataacggca
     9061 ctctgcaaca ccctgttaaa ggtgttcaca cgggttctcg cgtattcatg cagccggctt
     9121 ccgaaggtac cggtatcatc gccggtggtg caatgcgcgc cgttctggaa gtcgctgggg
     9181 ttcataacgt tctggctaaa gcatatggtt ccaccaaccc gatcaacgtg gttcgtgcaa
     9241 ctattgatgg cctggaaaat atgaattctc cagaaatggt cgctgccaag cgtggtaaat
     9301 ccgttgaaga aattctgggg aaataaacca tggcaaagac tattaaaatt actcaaaccc
     9361 gcagtgcaat cggtcgtctg ccgaaacaca aggcaacgct gcttggcctg ggtctgcgtc
     9421 gtattggtca caccgtagag cgcgaggata ctcctgctat tcgcggtatg atcaacgcgg
     9481 tttccttcat ggttaaagtt gaggagtaag agatgcgttt aaatactctg tctccggccg
     9541 aaggctccaa aaaggcgggt aaacgcttgg gtcgtggtat cggttctggc ctcggtaaaa
     9601 ccggtggtcg tggtcacaaa ggtcagaagt ctcgttctgg cggtggcgta cgtcgcggtt
     9661 tcgagggggg tcagatgcct ctgtaccgtc gtctgccgaa attcggcttc acttctcgta
     9721 aagcagcgat tacagccgaa gttcgtctgt ctgacctggc taaagtagaa ggcggtgttg
     9781 tagacctgaa cacgctgaaa gcggctaaca ttatcggtat ccagatcgag ttcgcgaaag
     9841 tgatcctggc tggcgaagta acgactccgg taactgttcg tggcctgcgt gttactaaag
     9901 gcgctcgtgc tgctatcgaa gctgctggcg gtaaaatcga ggaataagta gcagatggct
     9961 aaacaaccgg gattagattt tcaaagtgcc aaaggtggct taggcgagct gaaacgcaga
    10021 ctgctgtttg ttatcggtgc gctgattgtg ttccgtattg gctcttttat tccgatccct
    10081 ggtattgatg ccgctgtact tgccaaactg cttgagcaac agcgaggcac catcattgag
    10141 atgtttaaca tgttctctgg tggtgctctc agccgtgctt ctatctttgc tctggggatc
    10201 atgccgtata tttcggcgtc gatcattatc cagctgctga cggtggttca cccaacgttg
    10261 gcggaaatta agaaagaagg ggagtctggt cgtcgtaaga tcagccagta cacccgctac
    10321 ggtactctgg tgctggcaat attccagtcg atcggtattg ctaccggtct gccgaatatg
    10381 cctggtatgc aaggcctggt gattaacccg ggctttgcat tctacttcac cgctgttgta
    10441 agtctggtca caggaacgat gttcctgatg tggttgggcg aacagatcac tgaacgaggt
    10501 atcggcaacg gtatttcaat cattatcttc gccggtattg tcgcgggact cccgccagcc
    10561 attgcccata ctatcgagca agcgcgtcaa ggcgacctgc acttcctcgt gttgctgttg
    10621 gttgcagtat tagtatttgc agtgacgttc tttgttgtat ttgttgagcg tggtcaacgc
    10681 cgcattgtgg taaactacgc gaaacgtcag caaggtcgtc gtgtctatgc tgcacagagc
    10741 acacatttac cgctgaaagt gaatatggcg ggggtaatcc cggcaatctt cgcttccagt
    10801 attattctgt tcccggcgac catcgcgtca tggttcgggg gcggtactgg ttggaactgg
    10861 ctgacaacaa tttcgctgta tttgcagcct gggcaaccgc tttatgtgtt actctatgcg
    10921 tctgcaatca tcttcttctg tttcttctac acggcgttgg ttttcaaccc gcgtgaaaca
    10981 gcagataacc tgaagaagtc cggtgcattt gtaccaggaa ttcgtccggg agagcaaacg
    11041 gcgaagtata tcgataaagt aatgacccgc ctgaccctgg ttggtgcgct gtatattacc
    11101 tttatctgcc tgatcccgga gttcatgcgt gatgcaatga aagtaccgtt ctacttcggt
    11161 gggacctcac tgcttatcgt tgttgtcgtg attatggact ttatggctca agtgcaaact
    11221 ctgatgatgt ccagtcagta tgagtctgca ttgaagaagg cgaacctgaa aggctacggc
    11281 cgataattgg tcgcccgaga agttacggag agtaaaaatg aaagttcgtg cttccgtcaa
    11341 gaaattatgc cgtaactgca aaatcgttaa gcgtgatggt gtcatccgtg tgatttgcag
    11401 tgccgagccg aagcataaac agcgccaagg ctgatttttt cgcatatttt tcttgcaaag
    11461 ttgggttgag ctggctagat tagccagcca atcttttgta tgtctgtgcg tttccatttg
    11521 agtatcctga aaacgggctt ttcagcatgg aacgtacata ttaaatagta ggagtgcata
    11581 gtggcccgta tagcaggcat taacattcct gatcataagc atgccgtaat cgcattaact
    11641 tcgatttatg gcgtcggcaa gacccgttct aaagccatcc tggctgcagc gggtatcgct
    11701 gaagatgtta agatcagtga gctgtctgaa ggacaaatcg atacgctgcg tgacgaagtt
    11761 gccaaatttg tcgttgaagg tgatctgcgc cgtgaaatca gcatgagcat caagcgcctg
    11821 atggatcttg gttgctatcg cggcttgcgt catcgtcgtg gtctcccggt tcgcggtcag
    11881 cgtaccaaga ccaacgcacg tacccgtaag ggtccgcgca aaccgatcaa gaaataatcg
    11941 gggtgattga ataatggcaa aggcaccaat tcgtgcacgt aaacgtgtaa gaaaacaagt
    12001 ctctgacggc gtggctcata tccatgcttc tttcaacaac accatcgtga ctatcactga
    12061 tcgtcagggt aacgcgttgg gttgggcaac agccggtggt tccggtttcc gtggttctcg
    12121 caaatccact ccgtttgcag ctcaggttgc agcagagcgt tgcgctgacg ccgtgaaaga
    12181 atacggcatc aagaatctgg aagttatggt taaaggtccg ggtccaggcc gcgaatctac
    12241 tattcgtgct ctgaacgccg caggtttccg catcactaac attactgatg tgactccgat
    12301 ccctcataac ggttgtcgtc cgccgaaaaa acgtcgcgta taacgcctcg ttttccaggt
    12361 ttgttggaga aagaaaatgg caagatattt gggtcctaag ctcaagctga gccgtcgtga
    12421 gggcaccgac ttattcctta agtctggcgt tcgcgcgatc gataccaagt gtaaaattga
    12481 acaagctcct ggccagcacg gtgcgcgtaa accgcgtctg tctgactatg gtgtgcagtt
    12541 gcgtgaaaag caaaaagttc gccgtatcta tggtgtgctg gagcgtcagt tccgtaacta
    12601 ctacaaagaa gcagcacgtc tgaaaggcaa caccggtgaa aacctgttgg ctctgctgga
    12661 aggtcgtctg gacaacgttg tataccgtat gggcttcggt gccactcgtg cagaagcacg
    12721 tcagctggtt agccataaag caattatggt aaacggtcgt gttgttaaca tcgcttctta
    12781 tcaggttagt ccgaatgacg ttgtaagcat tcgtgagaaa gcgaagaagc agtctcgcgt
    12841 gaaagccgct ctggagctgg ctgagcagcg tgaaaagcca acttggctgg aagttgatgc
    12901 tggcaagatg gaaggtacgt ttaagcgtaa gccggagcgt tctgatctgt ctgcggacat
    12961 taacgaacac ctgatcgtcg agctttactc caagtaaagc ttagtaccaa agagaggaca
    13021 caatgcaggg ttctgtgaca gagtttctaa aaccgcgcct ggttgatatc gagcaagtga
    13081 gttcgacgca cgccaaggtg acccttgagc ctttagagcg tggctttggc catactctgg
    13141 gtaacgcact gcgccgtatt ctgctctcat cgatgccggg ttgcgcggtg accgaggttg
    13201 agattgatgg tgtactacat gagtacagca ccaaagaagg cgttcaggaa gatatcctgg
    13261 aaatcctgct caacctgaaa gggctggcgg tgagagttca gggcaaagat gaagttattc
    13321 ttaccttgaa taaatctggc attggccctg tgactgcagc cgatatcacc cacgacggtg
    13381 atgtcgaaat cgtcaagccg cagcacgtga tctgccacct gaccgatgag aacgcgtcta
    13441 ttagcatgcg tatcaaagtt cagcgcggtc gtggttatgt gccggcttct acccgaattc
    13501 attcggaaga agatgagcgc ccaatcggcc gtctgctggt cgacgcatgc tacagccctg
    13561 tggagcgtat tgcctacaat gttgaagcag cgcgtgtaga acagcgtacc gacctggaca
    13621 agctggtcat cgaaatggaa accaacggca caatcgatcc tgaagaggcg attcgtcgtg
    13681 cggcaaccat tctggctgaa caactggaag ctttcgttga cttacgtgat gtacgtcagc
    13741 ctgaagtgaa agaagagaaa ccagagttcg atccgatcct gctgcgccct gttgacgatc
    13801 tggaattgac tgtccgctct gctaactgcc ttaaagcaga agctatccac tatatcggtg
    13861 atctggtaca acgtaccgag gttgagctcc ttaaaacgcc taaccttggt aaaaaatctc
    13921 ttactgagat taaagacgtg ctggcttccc gtggactgtc tctgggcatg cgcctggaaa
    13981 actggccacc ggcaagcatc gctgacgagt aaccggatca caggttaagg ttttactgag
    14041 aaggataagg tcatgcgcca tcgtaagagt ggtcgtcaac tgaaccgcaa cagcagccat
    14101 cgccaggcta tgttccgcaa tatggcaggt tcactggttc gtcatgaaat catcaagacg
    14161 actctgccta aagcgaaaga gctgcgccgc gtagttgagc cgctgattac tcttgccaag
    14221 actgatagcg ttgctaatcg tcgtctggca ttcgcccgta ctcgtgataa cgagatcgtg
    14281 gcaaaactgt ttaacgaact gggcccgcgt ttcgcgagcc gtgccggtgg ttacactcgt
    14341 attctgaagt gtggcttccg tgcaggcgac aacgcgccga tggcttacat cgagctggtt
    14401 gatcgttcag agaaagcaga agctgctgca gagtaatctg aagcaacgta aaaaaacccg
    14461 ccccggcggg tttttttata cccgtagcat ccccacttat ctacaatagc tgtactcttt
    14521 ttgttcatcc cctggagtat ttatgtggtt acttgaccag tgggcagagc gtcatatagc
    14581 agaagcgcaa gcgaaaggtg agtttgataa tctggcaggt agcggcgaac cattgatact
    14641 ggatgatgat tctcatgtgc caccggaatt acgtgcgggg tatcgcttgc tgaagaatgc
    14701 tggttgctta ccgccagaac ttgagcagcg gagggaagca attcagcttc tggatatcct
    14761 gagaggtatc cgtcacgatg atccgcaata tcaagaggtt agccgtcgat tgtcattact
    14821 ggaattgaag ctgcgacaag ctggatttag taccgatttt ttacgcggcg attatgctga
    14881 caagttgttg gacaaaatca acgataacta gtggagtatg tatgtatcgc attggtgagc
    14941 tggcaaaaat ggcggaagta acacctgaca cgattcgtta ttacgaaaaa cagcagatga
    15001 tggagcatga agtgcgtact gaaggcgggt ttcgcctgta taccgaaagc gatctccagc
    15061 gattgaaatt tatccgccat gccagacaac taggtttcag tctggagtcg atccgcgagt
    15121 tgctgtcgat ccgcatcgat cctgaacacc atacctgtca ggagtcaaaa ggcattgtgc
    15181 aggaaagatt gcaggaagtc gaagcacgga tagccgagtt gcagagtatg cagcgttcct
    15241 tgcaacgcct taacgatgcc tgttgtggga ccgcccatag cagtgtttat tgttcgattc
    15301 ttgaagctct tgaacaaggg gcgagtggcg ttaagagtgg ctgttgattt tttgcactgg
    15361 caggattaca ctcgcgccgt aaaataacca attggagttt ttatgagccg atatcagcat
    15421 actaaagggc agataaggga taatgcgata gaagcattac tacatgatcc cttattccga
    15481 cagcgcgtag agaaaaataa gaaggggaaa ggcagttaca tgcgaaaagg aaaacatggc
    15541 aatcggggga actgggaggc cagtggcaag aaagtaaatc acttttttac cactggtctt
    15601 ctgctttcag gcgcttgtta agagcggtta ttctgctctt tcagcaaatc acgaatttct
    15661 gccagtaata cttcttcttt agttggtgca ggtgcggcag ctggttcttc ttttttccga
    15721 ttcagtttgt tgattagctt aatcgccata aagatggcaa aggccacaat cagaaaatca
    15781 aagacgtttt gaatgaagac accgtaatgc atcacaacag cagggatatc cccctgcgca
    15841 tcgcgtagcg tgacagcaaa ctgtttaaag tcgatcccgc caattaataa gcccagaggt
    15901 ggcatgatga tatcggcaac cagtgaagat acaatcttcc cgaatgccgc accgataatg
    15961 acacccaccg ccaaatccac cacgttcccg cgcatcgcaa attcgcgaaa ttctttaata
    16021 atgctcatgt tattctccct atgaagccga caaccataag tctaacaaat gttaagccat
    16081 tttcctgcca ggaatgaatt taattaatcc ttgataatca aagggaaata ataaggcgtc
    16141 attagacgcc ttattaatta caagaagaaa gggcttggct ggaagagtct ttcgacgtcg
    16201 gtaataaact ttttatctgt gaggaacata attacgtgat cgccttgctc aatgcgcaga
    16261 ttgtcattgg caatcatcac gtcgtttcca cgtaccaccg ctccaataat cgttcctggc
    16321 ggtagcttga tttcgtcaat gactctgccg acaacgcgtg aggtgctttc atcaccgtga
    16381 gcaacggctt caatagcttc tgctacgccg cggcgcaatg aggaaacacc aacaatatct
    16441 gcttttcgca catggctaag caacgcagaa atagttgctt gttgtggtga aattgcaata
    16501 tcgatcacgc tcccctgaac cagatccaca taagcgcgac gctggatcaa taccatcacc
    16561 tttttcgcac ccatacgttt ggcaagcatg gcggacatga tattggcctc gtcatcgttg
    16621 gtgacggcaa taaacagatc aacttgatcg atatgttctt cggccagcag ttcttgatcc
    16681 gacgcatcac caaaaaagac gatcgtattc tgcaactttt ccgccagttc ggcagcgcgc
    16741 tgctgattac gttcgatgag tttaacgctg taatcttttt ccagacgacg cgccagccct
    16801 gcaccgatat taccgccacc aaccagcatg atccgcttat acggtttttc cagtcgctgt
    16861 aattcactca tcaccgcgcg gatatgctgt gaagcggcaa taaagaacac ttcatcacca
    16921 gcttcaacaa tggtcgaacc ttgtggacga atggggcgat cgtggcggaa aattgctgcc
    16981 acacgagtat cgatatgtgg catatgttcg cgcatggtcg aaagtgcatt accaatcagc
    17041 gggccgccat aataggcttt aactacagcg aggctgactt taccctcagc gaagttcacc
    17101 acctgcaatg cgcctggata ctcaatcagt cggtaaatat tatcgataac caactgctct
    17161 ggtgcgatca gatgatcaat cggtacagca tctgaatgaa atagcttatc ggcatcgcgt
    17221 acgtagtctg gtgagcggat gcgagcgatg cgattagggg tgttgaaaag tgagtaggct
    17281 acctggcagg caaccatatt ggtttcatct gaactggtta cagcaaccag catatcggcg
    17341 tcgtcggcac ctgcctcccg caatacgcgt ggatgagagc catgcccctg cacgactcgc
    17401 aggtcaaatt tatcctgcaa ggtccgcaga cgctcaccgt tggtatcgac aacagtaata
    17461 tcgttgttct cgccaaccag gttttccgcc agtgtgccgc caacctggcc ggcacccaga
    17521 atgataattt tcatcagtct cgacccgtta tctcatcact ttttgattag cttagcgtaa
    17581 aagaagccgt cgccctcttc ggcaccaggc agattttgtt tacccggttg ctctggtgtt
    17641 cctgtttcgc aaagttcggc atcagcggta cgttgcaaaa aagctttaat ctgcaggcta
    17701 ttctcttccg gtaacaccga acaggtggca tagaccaggg ttccaccgga ttttaaatgc
    17761 ggccaaatgg cgtcgagaat ttcagactgc aattgcgcga gttccgggat atcgcgatcg
    17821 cgacgtaacc atttaatatc cggatggcga cgaatcaccc ccgttgctga acaaggcgca
    17881 tctaataaaa tgcgatcaaa ctgttgctcg ccacaccatt gggaagggta acggccatca
    17941 ccttgtttca cggttgcctt cataccaagg cgttttaaat tgtcgtaaac gcgagagagg
    18001 cgctgttcgt caatatcaac cgcaacaacc tgcgcttctg gtgccacctc aaggatatgc
    18061 gttgttttac cgccgggggc ggcacaaaga tccagaatgt gttcaccgtt ttgtggcgca
    18121 agccaggtca tgcaaccttg tgctgatgca tcctgaacgg taacccatcc gtcttcaaaa
    18181 ccaggtagcg catgaacagg tgcaggtgtt tccagacgta cagcatcagg gtaatccgca
    18241 tgcgggaaac ctttcattcc tgcttcatcc agcaatgcaa gccagctgtc gcgggaatga
    18301 tgcgtacgat taacgcgcag ccacattggc ggacgctggt tattggcttc gacgatggat
    18361 tgccactgct ctggatacgc tttttgcaga cgcttcagca accaggaagg atgcagataa
    18421 cgtgcatcac tggcattaaa cttggctaat aactcttctt gctgacgctg gaactggcgt
    18481 aatacaccgt taatcaaccc tttaagttgc ggacgcttaa ttgcgatagc gccttcaacc
    18541 gtttcagcca gcgcagcatg aggtggaatg cgggtataaa gcagttgata caaaccaacc
    18601 ataatcaggt aatgcacagt gcgctgtttg ccggtcatcg gacgggccat taacttatta
    18661 atcagccagt ctaactgcga aagcgtacgc agtacgccaa agcacaactc ttgaagaagt
    18721 gctttgtctt tatcagaaac tttttgctgg agcggtggca gaatgttgct taatgattgc
    18781 ccttgctcga cgacttgttc aacggcctgg gccgccatgc tacgtaaatt acgttgtttt
    18841 ttcataagta taaaaatgcc cggtaagacc gggcttagaa gagtggacta tcaggccaga
    18901 cggttgcccg gaacaaacca ttcccgacga gaattcagga ggtcttgcgc gctcatcgct
    18961 ttcttacccg caggttgtaa cgagagcaga ttcaggattc catcaccagt tgcaacctga
    19021 atgccttgtt tgttggcttc aaggatcgtt cctggtgcag cgttggttgc cgtatcaatg
    19081 accgacgctt tccagacttt aaccggctgt ctttcaattt ccagccagct cattggccat
    19141 ggattgaaag cgcgaatgta gcgttcaagc tgtgctgccg aaagtgacca gtcaatacgc
    19201 gcttcttctt tactcaactt ttcggcgtaa gtgacaagag tttcgtcctg aacttctggt
    19261 ttcgccgtgc cgtctgccag ttgtttcaac gtggtgataa gcccttgtgg gccaagctct
    19321 gccagcttgt cgtacagcgt accactggta tcttctgcag taatcgggca ggagagctta
    19381 tagagcatgt caccggtgtc taaaccgaca tccatttgca taatggtcac accagtttct
    19441 gcatcacccg cccatagtga gcgttggatt ggtgcagcgc cgcgccagcg tggcagcagt
    19501 gaaccatgaa cgttgataca gccaagacgc ggcatctcca gcactgcttt aggcagaatt
    19561 aagccatagg cgacgacgac cataacatca gcctgcagat cggcgaccag ttgctggttt
    19621 tcttgtggac gcagggaaac aggttgaaaa acgggcagac ctttttcctc agccagaact
    19681 ttaaccgggc tgggcatcag ttttttaccg cgtcctgccg gtcggtctgg ctgggtgaac
    19741 acgccaacga cgttatgacc agaagacaac agcgcgtcga gatgacgcgc tgcaaagtca
    19801 ggtgtacccg caaaaataat acgtagtgat tctgacacgt tagttcttat ccttaagccc
    19861 gggctttcag acgatccagt ttttcaactt tctgacgaat acgttgttgt ttcaacggtg
    19921 acagataatc cataaacagt ttgccgacca ggtgatccat ctcatgctga atacagatgg
    19981 ctaacagacc gtctgcttcc aattcaaatg gtttaccgtc gcggtccagg gcgcgaattt
    20041 taactttctc tgcgcgtggc actaaagcac gttgttcagg gatcgacagg caaccttctt
    20101 caatgcctgt ttcgccgctt ttttctaaaa gctccggatt gattaacacc agccgttcgt
    20161 cacggttttc cgaaacatca ataacaatga tacgttgatg gatatcaacc tgggttgccg
    20221 ccaggccaat accttcttct gcgtacatcg tctcgaacat atcatcgacg atacgctgaa
    20281 tttctgcatt cacttcttct accggtttag caactttgcg aagccgctcg tccggaatat
    20341 gtaacacttg caaaactgac ataaatctcc agagatgtgt tcaggagtta gaaagattat
    20401 ttcttctatt ctagacaaat ccccctctga ttgacagcat cactgaccaa tcgcaaagat
    20461 tgctaaggct gcttatggca gggagataag gatggtcgat acagatattt ggctgcgttt
    20521 aatgagcatc agcagcttgt acggcgatga tatggtccgt atagctcact ggctggcaaa
    20581 acagtcgcat attgatgcgg ttgtattgca gcaaacaggg cttacattgc ggcaggcaca
    20641 acgctttctt tcatttccgc gaaagagtat cgaaagctca ctttgttggt tggagcaacc
    20701 caaccatcat ttaatccctg cggacagcga attttatcct cctcaacttc tggcgacgac
    20761 agattacccc ggcgcactgt ttgttgaagg agaactgtac gcgctgcatt catttcagct
    20821 tgccgtagtg gggagtcggg cgcattcatg gtatggcgag cgatggggac gattattttg
    20881 cgaaactctg gccacgcgtg gagtgacaat tacgagtgga ctggcgcgtg gaatcgatgg
    20941 tgtggcgcat aaagcggcct tacaggtaaa tggcgtcagc attgctgtat tggggaacgg
    21001 acttaatacc attcatccgc gccgccatgc ccgactggct accagtttgc ttgaacatgg
    21061 tggggcactt gtctcggaat ttcccctcga tgtttcaccc cttgcttaca atttcccacg
    21121 aagaaatcgc attatcagtg gtctaagtaa aggtgtactg gtggtggaag cggctttgcg
    21181 cagtggttcg ttggtgacag cacgttgtgc gcttgagcag gggcgtgaag tttttgcctt
    21241 gccaggacca atagggaatc cgggaagcga agggcctcac tggttaataa aacaaggtgc
    21301 gattcttgtg acggaaccgg aagaaattct ggaaaacttg caatttggat tgcactggtt
    21361 gccagacgcc cctgaaaatt cattttattc accagatcag caagacgtgg cattgccatt
    21421 tcctgagctc ctggctaacg taggagatga ggtaacacct gttgacgtcg tcgctgaacg
    21481 tgccggccaa cctgtgccag aggtagttac tcaactactc gaactggagt tagcaggatg
    21541 gatcgcagct gtacccggcg gctatgtccg attgaggagg gcatgccatg ttcgacgtac
    21601 taatgtattt gtttgaaacc tatattcaca cagaagctga gttgcgtgtg gatcaagaca
    21661 aacttgaaca ggatcttacc gacgcaggat ttgatcgaga agatatctac aatgccctgc
    21721 tttggctgga aaagcttgcg gattatcagg aaggactgac agaaccgatg caactggcct
    21781 ctgatccact ctccatgcgt atttataccc ctgaggagtg tgaaagactg gatgccagct
    21841 gtcgtggttt tctgcttttc cttgagcaaa ttcaggtgct taaccttgaa atccgtgaaa
    21901 tggtgataga gcgagtgctc gcgctggata ccgcagagtt cgacctggaa gacctgaaat
    21961 gggtaatcct gatggtgttg ttcaatattc cgggctgcga aaatgcgtac cagcaaatgg
    22021 aagaattact ctttgaagtg aatgaaggta tgctgcatta atcatttctt taattcagca
    22081 taagttgtta tggcgaaatc agcactgttc acggtgcgta ataatgagtc ctgcccaaag
    22141 tgcggggctg aactggttat tcgatccggg aaacacggtc cgtttcttgg atgctcacag
    22201 tatccggcgt gtgactacgt ccgtcctctg aaatcttcag cggatggaca tattgtcaaa
    22261 gttctggagg ggcaggtttg ccctgcatgt ggcgcaaatc tggtattacg ccagggacgc
    22321 tttggtatgt ttattggttg cagtaactac cctgaatgcg aacataccga acttatcgat
    22381 aaaccggacg aaacagcaat tacatgcccc caatgtcgga cgggccatct ggtccagcgc
    22441 cgctcccgtt atggcaaaac atttcactcc tgtgatcgct acccggagtg tcaatttgcc
    22501 attaacttca aacccatagc tggagaatgc cctgagtgtc attatccact actcatcgaa
    22561 aagaaaaccg cgcagggtgt aaaacacttt tgtgccagta aacaatgtgg aaagccggtt
    22621 tcggcggaat aataacgtga ataataacct gcaaggagac gctatcgcag ctgcgataga
    22681 tgtcctcaat gaagaacgtg tcatcgccta tccaacggaa gccgttttcg gtgttgggtg
    22741 cgatcctgat agcgaaacag cagtgatgag actgttggag ttaaaacagc gtccggttga
    22801 taaggggctg attttaatcg cggcaaatta cgagcagctt aaaccctata ttgatgacac
    22861 catgctgact gatgcgcagc gtgaaaccat tttttcccgc tggccaggtc ctgtcacctt
    22921 tgtctttccc gcgcctgcga caacaccgcg ctggttgacg ggccgctttg attcgcttgc
    22981 tgtacgagtc accgaccatc cgttggtggt tgctttgtgc caggcttatg gtaaaccgct
    23041 ggtttctacc agtgccaact tgagtggatt gccaccttgt cgaacagtag acgaagttcg
    23101 cgcacaattt ggcgcggcgt tcccggttgt gcttggtgaa acgggggggc gtttaaatcc
    23161 ttcagaaatc cgcgatgccc tgacgggtga actgtttcga caggggtaac ataatggaaa
    23221 cctatgctgt ttttggtaat ccgatagccc acagcaaatc gccattcatt catcagcaat
    23281 ttgctcagca actgaatatt gaacatccct atgggcgcgt gttggcaccc atcaatgatt
    23341 tcatcaacac actgaacgct ttctttagtg ctggtggtaa aggtgcgaat gtgacggtac
    23401 cttttaaaga agaggctttt gccagagcgg atgagcttac tgaacgggca gcgttggctg
    23461 gtgctgttaa taccctcaag cggttagaag atggacgctt gcagggtgac aataccgatg
    23521 gtataggttt gttaagcgat ctggaacgtc tgtcttttat ccgtccgggt ttacgtattc
    23581 tgcttatcgg cgctggtgga gcatctcgcg gcgtactact accactcctt tccctggact
    23641 gtgcggtgac aatcactaat cggacggtat cccgtgcgga agagttggct aaattgtttg
    23701 cgcacactgg cagtattcag gcgttgggta tggacgaact ggaaggtcat gagtttgatc
    23761 tcattattaa tgcaacatcc agtggcatca gtggtgatat tccggcgatc ccgtcatcgc
    23821 tcattcatct aggcatttat tgctatgaca tgttctatca gaaaggaaaa actccttttc
    23881 tggcatggtg tgagcagcga ggctcaaagc gtaatgctga tggtttagga atgctggtgg
    23941 cacaggcggc tcatgccttt cttctctggc acggtgttct gcctgacgta gaaccagtta
    24001 taaagcaatt gcaggaggaa ttgtccgcgt gaatcaggcc atccagtttc cggacaggga
    24061 agagtgggac gagaataaaa aatgtgtatg ttttcccgct ctcgtgaatg gtatgcaact
    24121 gacatgcgcg atctctggcg agagtctggc gtatcgcttt actggagata cgccagaaca
    24181 gtggttagcg agttttcgtc agcatcgctg ggacctggaa gaagaagcgg aaaacttaat
    24241 tcaggaacaa agtgaagatg atcaaggctg ggtctggtta ccctgatcca gatattcgtc
    24301 cttccatttc acgtaattat tcgcggaata gcgtaaccca gccttctctt catcacttaa
    24361 cgggcggatc tgtttgacgg ggctaccgag atacagatat ccgctctcca gccgtttatt
    24421 ttgtgggacc agactacccg caccaatcat cacatcatct tctactattg cgccatcaag
    24481 taaaattgag cccatcccaa ccaaaactcg attgccaatg gtgcagccgt ggagcatcac
    24541 cttgtgacca acagtgacat cttcgccaat ggttaatggg ttgccatctg ggttgtacga
    24601 ggatttatga gtgacatgca acatactgcc atcctggata ttggtgcgtg ctccgatctg
    24661 tacataatgt acatctccac gaatcacaac gagcggccag atccccacat catcagccag
    24721 acgaacgcca ccaatcacga cactgctatc gtcgatcatt acgcgctgac cgatttgtgg
    24781 aaaaagatcg cggtatgggc gtaaaacatc agacatactt acctcagcaa taaatgattt
    24841 actaatgact ttgggggcat tattggcctt gtgcaagtct tttagtatgc aaaaaagcac
    24901 cgttttgtgt gcgattgcag caaaaagggt gaaaaaacaa caaacagaaa aaaagatcaa
    24961 aaaaatactt gtgcaaaata ttgggatccc tataatgcgc ctccgttaag acgacaacgt
    25021 gaaacacttc acaggatggt cggaacaacg aagagaaaaa atcctgaaat tcagggttga
    25081 ctctgaaaga ggaaagcgta atatacgcca cctcgcgaca gtgagctgaa agccgcgtcg
    25141 caactgctct ttaacaattt atcagacaat ctgtgtgggc actcgaagat acggattctt
    25201 aacgtcgcaa gacgaaaaat gaataccaag tctcaagagt ga
//
LOCUS       DAJVSY010000046        25118 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.046, whole genome shotgun sequence.
ACCESSION   DAJVSY010000046 DAJVSY010000000
VERSION     DAJVSY010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25118
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.046"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..393
                     /gene="hyfA"
                     /locus_tag="OQQ19_001718"
     CDS             <1..393
                     /gene="hyfA"
                     /locus_tag="OQQ19_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit HyfA"
                     /protein_id="HCS1803382.1"
                     /translation="QLNESLCIGCKLCAVVCPFGAISASGSRPVNAPAQYVFQADGSL
                     KDGEENAPTQHALLRWEPGVQTVAVKCDLCNFLPEGPACVRACPNQALRLITDDSLQR
                     QMKEKQRLAASWFANGGEDPLSLTQEQH"
     gene            393..2409
                     /gene="hyfB"
                     /locus_tag="OQQ19_001719"
                     /pseudo
     CDS             393..2409
                     /gene="hyfB"
                     /locus_tag="OQQ19_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311371.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit B"
     gene            2420..3367
                     /gene="hyfC"
                     /locus_tag="OQQ19_001720"
     CDS             2420..3367
                     /gene="hyfC"
                     /locus_tag="OQQ19_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311372.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit HyfC"
                     /protein_id="HCS1803383.1"
                     /translation="MRQTLCDGYLVIFALAQAVILLLLTPLFTGISRQIRARMHSRRG
                     PGIWQDYREIHKLFKRQEVAPISSGLMFRLMPWVLISSMLVLAMALPLFITVSPFAGG
                     GDLITLIYLLALFRFFFALSGLDTGSPFAGVGASRELTLGILVEPMLILSLLVLALIA
                     GSTHIEMISNTLATGWNSPLTTVLALLACGFACFIEMGKIPFDVAEAEQELQEGPLTE
                     YSGAGLALAKWGLGLKQVVMAALFVALFLPFGRAQELSLACLLTSLVVTLLKVLLIFV
                     LASIAENTLARGRFLLIHHVTWLGFSLAALAWVFWLTGL"
     gene            3384..3494
                     /locus_tag="OQQ19_001721"
     CDS             3384..3494
                     /locus_tag="OQQ19_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000429114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoin racemase"
                     /protein_id="HCS1803384.1"
                     /translation="MENLALTTLMLPFIGALVVSFSPQRRAAEWGFCSPH"
     gene            3506..4613
                     /locus_tag="OQQ19_001722"
                     /pseudo
     CDS             3506..4613
                     /locus_tag="OQQ19_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001442177.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit D"
     gene            4625..5275
                     /gene="hyfE"
                     /locus_tag="OQQ19_001723"
     CDS             4625..5275
                     /gene="hyfE"
                     /locus_tag="OQQ19_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 membrane subunit"
                     /protein_id="HCS1803385.1"
                     /translation="MIGSMIVNNLAGLMMLTSLFVISVKSYRLSCGFYACQSLVLVSI
                     FATLSCLFAAEQLLIWSASAFITKVLLVPLIMTYAARNIPQNIPEKALFGPAMMALLA
                     ALIVLLCAFVVQPVKLPMATGLKPALAVALGHFLLGLLCIVSQRNILRQIFGYCLMEN
                     GSHLVLALLAWRAPELVEIGIATDAIFAVIVMVLLARKIWRTHGTLDVNNLTALKG"
     gene            5280..6860
                     /gene="hyfF"
                     /locus_tag="OQQ19_001724"
     CDS             5280..6860
                     /gene="hyfF"
                     /locus_tag="OQQ19_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit F"
                     /protein_id="HCS1803386.1"
                     /translation="MSYSVMFALLLLTPLLFSLLCFACRKRGLSATCTVTVLHSLGIT
                     LLLILALWVVQTAADAGEIFAAGLWLHIDGLGGLFLAILGVIGFLTGVYSIGYMRHEV
                     AHGELSPVTLCDYYGFFHLFLFTMLLVVTSNNLIVMWAAIEATTLSSAFLVGIYGQRS
                     SLESAWKYIIICTVDVAFGLFGTVLVYANAASVMPQAEMAIFWSEVLKQSSLLDPTLM
                     LLAFVFVLIGFGTKTGLFPMHAWLPDAHSEAPSPVSALLSAVLLNCALLVLIRYYIII
                     CQAIGSDFPNRLLLIFGMLSVAVAAFFILVQRDIKRLLAYSSVENMGLVAVALGIGGP
                     LGIFAALLHTLNHSLAKTLLFCGSGNVLLKYGTRDLNVVCGMLKIMPFTAVLFGGGAL
                     ALAGMPPFNIFLSEFMTVTAGLARNHLLIIVLLLLLLTLVLAGLVRMAARVLMAKPPQ
                     AVNRGDLGWLTTSPMVILLVMMLAMGTHIPQPVIRILAGASTIVLSGTHDLPAQRSTW
                     HDFLPSGTASVSEKHSER"
     gene            6850..8565
                     /gene="hyfG"
                     /locus_tag="OQQ19_001725"
     CDS             6850..8565
                     /gene="hyfG"
                     /locus_tag="OQQ19_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 catalytic subunit HyfG"
                     /protein_id="HCS1803387.1"
                     /translation="MNVNSSSNSGEAILAALKTQFPGAVLDEERQTPEQVTITVKINL
                     LPDVVHYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSR
                     EFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLHKDAMDYRL
                     RPEPTTDSETYAFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV
                     HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSI
                     LLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGG
                     VRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPV
                     GPLIRGSGFARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFA
                     LDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW
                     PVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRN
                     RSPLK"
     gene            8575..9114
                     /gene="hyfH"
                     /locus_tag="OQQ19_001726"
     CDS             8575..9114
                     /gene="hyfH"
                     /locus_tag="OQQ19_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit H"
                     /protein_id="HCS1803388.1"
                     /translation="MLKLLKTIMRAGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG
                     ACACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKA
                     DLYTRATFHLQRCSRCERPFAPQKTVALAAELLAQQQNAPQNREMLRAQASVCPECKQ
                     RATLINDDTDVPLVAKEQL"
     gene            9111..9869
                     /gene="hyfI"
                     /locus_tag="OQQ19_001727"
     CDS             9111..9869
                     /gene="hyfI"
                     /locus_tag="OQQ19_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 catalytic subunit HyfI"
                     /protein_id="HCS1803389.1"
                     /translation="MSPVLTQHVSQPITLDEQTQKMKRHLLQDIRRSAYVYRVDCGGC
                     NACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH
                     KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQ
                     QKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIEREARRLAGYRQGREICDRLLRHLSDD
                     PTGNRVNTWLRDADDPRLNSIVQQLFRVLRGLHD"
     gene            9862..10275
                     /gene="hyfJ"
                     /locus_tag="OQQ19_001728"
     CDS             9862..10275
                     /gene="hyfJ"
                     /locus_tag="OQQ19_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416985.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 assembly chaperone HyfJ"
                     /protein_id="HCS1803390.1"
                     /translation="MTEECGEIVFWTLRKKFVASSDEMPEHRSQVMYYSLAIGHHVGV
                     IDCLNVAFRCPLTENEDWLAQVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFALLA
                     DDATSVWQARSIQFIHLLDEIVQEPAIYLMARKIA"
     gene            10305..12317
                     /gene="hyfR"
                     /locus_tag="OQQ19_001729"
                     /pseudo
     CDS             10305..12317
                     /gene="hyfR"
                     /locus_tag="OQQ19_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416986.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator HyfR"
     gene            12339..13184
                     /locus_tag="OQQ19_001730"
                     /pseudo
     CDS             12339..13184
                     /locus_tag="OQQ19_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311381.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter"
     gene            complement(13222..14283)
                     /locus_tag="OQQ19_001731"
     CDS             complement(13222..14283)
                     /locus_tag="OQQ19_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HCS1803391.1"
                     /translation="MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLV
                     AIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRD
                     MPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLL
                     TIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVL
                     EMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGT
                     EFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPL
                     ATLIKAVIHAWPDGQIAQE"
     gene            14496..15959
                     /gene="bepA"
                     /locus_tag="OQQ19_001732"
     CDS             14496..15959
                     /gene="bepA"
                     /locus_tag="OQQ19_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-barrel assembly-enhancing protease"
                     /protein_id="HCS1803392.1"
                     /translation="MFRQLKKNLVATLIAAMTIGQVAPAFADNADTLPDMGTSAGSTL
                     SIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINND
                     EINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHLTQRHLARAMEDQQRSTPLT
                     WVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFD
                     PQAMPTFLEKLLDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVVQSSEDFYL
                     AKARTLGMYNSGRNQLTSDLLDEWAKGNVRQQRAAQYGRALQAMEANKYDEARKTLQP
                     LLAAEPGNAWYLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYLQGGQP
                     QEAANILNRYTFNNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISLL
                     SSASSQVKLGSLQQARYDARIDQLRQLQERFKPYTKM"
     gene            15980..16339
                     /gene="arsC"
                     /locus_tag="OQQ19_001733"
     CDS             15980..16339
                     /gene="arsC"
                     /locus_tag="OQQ19_001733"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311384.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HCS1803393.1"
                     /translation="MTKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAAT
                     LRDLLKMLGMNSARELMRQKEDLYKELNLADSSLSEEALIQAMVDNPKLMERPIVVAN
                     GKARIGRPPEQVLEIVG"
     gene            complement(16477..17223)
                     /gene="hda"
                     /locus_tag="OQQ19_001734"
     CDS             complement(16477..17223)
                     /gene="hda"
                     /locus_tag="OQQ19_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA inactivator Hda"
                     /protein_id="HCS1803394.1"
                     /translation="MVNFSRFCEILVEVSLNTPAQLSLPLYLPDDETFASFWPGDNSS
                     LLAALQNVLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVP
                     EVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNL
                     GLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRT
                     LFMTLDQLDRASITAQRKLTIPFVKEILKL"
     gene            complement(17273..18562)
                     /gene="uraA"
                     /locus_tag="OQQ19_001735"
     CDS             complement(17273..18562)
                     /gene="uraA"
                     /locus_tag="OQQ19_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil permease"
                     /protein_id="HCS1803395.1"
                     /translation="MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPA
                     TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFC
                     LVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTII
                     ISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTL
                     YTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVI
                     SGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVM
                     GGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGM
                     ALATIVGIGLSLIFKLISVLRPEEVVLDAEEADITDK"
     gene            complement(18648..19274)
                     /gene="upp"
                     /locus_tag="OQQ19_001736"
     CDS             complement(18648..19274)
                     /gene="upp"
                     /locus_tag="OQQ19_001736"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HCS1803396.1"
                     /translation="MKIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEAT
                     ADLETEKVTIEGWNGPVEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMY
                     RNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLV
                     AAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK"
     gene            19598..20635
                     /gene="purM"
                     /locus_tag="OQQ19_001737"
     CDS             19598..20635
                     /gene="purM"
                     /locus_tag="OQQ19_001737"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HCS1803397.1"
                     /translation="MTDKTSLSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGG
                     FGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEP
                     LFFLDYYATGKLDVDTASAVISGIAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFC
                     VGVVEKSEIIDGSKVSDGDVLIALGSSGPHSNGYSLVRKILEVSGCDPQTTELDGKPL
                     ADHLLAPTRIYVKSVLELIEKVDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQW
                     PEVFNWLQTAGNVERHEMYRTFNCGVGMIIALPAPEVDKALALLNANGENAWKIGIIK
                     ASDSEQRVVIE"
     gene            20635..21273
                     /gene="purN"
                     /locus_tag="OQQ19_001738"
     CDS             20635..21273
                     /gene="purN"
                     /locus_tag="OQQ19_001738"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HCS1803398.1"
                     /translation="MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLE
                     RARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAG
                     RLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGD
                     TEDDVTARVQTQEHAIYPLVISWFADGRLKIHENAAWLDGQRLPPQGYAADE"
     gene            21445..23511
                     /gene="ppk1"
                     /locus_tag="OQQ19_001739"
     CDS             21445..23511
                     /gene="ppk1"
                     /locus_tag="OQQ19_001739"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HCS1803399.1"
                     /translation="MGQEKLYIEKELSWLSFNERVLQEAADKSNPLIERMRFLGIYSN
                     NLDEFYKVRFAELKRRIIISEEQGSNSHSRHLLGKIQSRVLKADQEFDGLYNELLLEM
                     ARNQIFLINERQLSVNQQNWLRHYFKQYLRQHITPILINPDTDLVQFLKDDYTYLAVE
                     IIRGDTIRYALLEIPSDKVPRFVNLPPEAPRRRKPMILLDNILRYCLDDIFKGFFDYD
                     ALNAYSMKMTRDAEYDLVHEMEASLMELMSSSLKQRLTAEPVRFVYQRDMPNALVEVL
                     REKLTISRYDSIVPGGRYHNFKDFINFPNVGKANLVNKPLPRLRHIWFDKAQFRNGFD
                     AIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHN
                     GKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKENGEVV
                     RYAHIGTGNFNEKTARLYTDYSLLTADARITNEVRRVFNFIENPYRPVTFDYLMVSPQ
                     NSRRLLYEMVDREIANAQQGLPSGITLKLNNLVDKGLVDRLYAASSSGVPVNLLVRGM
                     CSLIPNPEGISDNIRAISIVDRYLEHDRVYIFENGGDKKVYLSSADWMTRNIDYRIEV
                     ATPLLDPHLKQRVLDIIDILFSDTVKARYIDKELSNRYVPRGNRRKVRAQLAIYDYIK
                     SLEQPE"
     gene            23516..25057
                     /gene="ppx"
                     /locus_tag="OQQ19_001740"
     CDS             23516..25057
                     /gene="ppx"
                     /locus_tag="OQQ19_001740"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HCS1803400.1"
                     /translation="MPIHDKSPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQR
                     VHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFL
                     KRVEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI
                     LVESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQFRIQGWNVAMGASG
                     TIKAAHEVLMEMGEKDGIITPERLEKLVKEVLRHRNFASLSLPGLSEERKTVFVPGLA
                     ILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQDVRSRTASSLANQYHIDSEQAR
                     RVLDTTMQMYEQWREQQPKLAHPQLEALLRWAAMLHEVGLNINHSGLHRHSAYILQNS
                     DLPGFNQEQQLMMATLVRYHRKAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLLNNQRQ
                     ATTTPPTLTLITDDSHWTLRFPHDWFSQNALVLLDLEKEQEYWEGVAGWRLKIEEEST
                     PEIAA"
BASE COUNT         5717 a         6578 c         6684 g         6139 t
ORIGIN      
        1 caactcaacg aaagcctctg tattggctgc aagctttgcg ccgtggtctg cccatttggc
       61 gcaatcagcg cttcaggaag ccgtccggtg aatgcccctg cgcaatatgt ttttcaggct
      121 gacggctcac tcaaagatgg cgaagaaaac gcgccgaccc aacatgcttt gctgcgctgg
      181 gaaccgggtg tccagaccgt cgcggtgaaa tgcgacctgt gtaatttctt gccagaaggt
      241 ccggcctgcg ttcgcgcttg cccgaatcag gcgttacggc tgattaccga cgatagcctg
      301 caacgtcaga tgaaagaaaa acagcgcctt gccgcaagct ggtttgccaa tggcggggag
      361 gatccccttt ccctcactca ggagcaacac taatggatgc cctgcaatta ttaacctggt
      421 cgctgatcct ctttctgttt gccagtctgg cttcgctgtt ttactcggtc tggacagact
      481 ggctattaag ctttccggca tcacatcgct ggtgggcggc gtgattggca tcatcagcgg
      541 aattacgcaa ttacatgctg gtgtaacttt agtcgcccgt tttgccaccc cttttgactt
      601 tgccgattta accctgcgaa tggatagcct ctcggtattt atggtgctgg ttatctcctt
      661 gctggtggtg gtttgttcgc tctattcatt gacttatatg cgcgaatacg agggcaaagg
      721 cgcggcggcg atgggcttct ttatgaatct tttcatcgca tcgatggttg ccctgctggt
      781 gatggacaac gctttttggt tcatcgtgct gtttgaaatg atgtcgctgt cttcctggtt
      841 tctggtcatt gccaggcagg ataaaacgtc gatcaacgct ggcatgctct acttttttat
      901 cgcccacgcc ggatcggtgc tgattatgat cgccttcttg ctgatggggc gcgaaagcgg
      961 cagcctcgat tttgccagtt tcgcacgctt tcactttctc cggggctggc gtcggcgatg
     1021 tttctgctgg cctttttcgg ttttggcgcg aaagccggga tgatgccgtt gcacagctgg
     1081 ttgccgcgcg ctcaccctgc cgcaccatcg cacgcttcgg cgttgatgtc tggcgtaatg
     1141 gtcaaaatcg gtattttcgg catcctgaaa gtagcgatgg atctgctggc gcaaacgggt
     1201 ttgcctctgt ggtggggcat tctggtgatg gcgatcggcg caatctccgc gctcctgggc
     1261 gtgctatatg cgctggcgga acaggatatc aaacggctgc tggcctggag taccgtcgaa
     1321 aacgtcggca ttattttgct ggcagtcggt gtggcgatgg acggtctgtc actgcacgac
     1381 ccgctgctca ccgtggttgg actgctcggc gcactgtttc atctgctcaa ccatgcgctg
     1441 ttcaaagggc tgctatttct cggcgcgggc gcgattattt cgcgtttgca tacccacgac
     1501 atggaaaaaa tgggggcact ggcgaaacgg atgccgtgga cagccgcagc atgcctgatt
     1561 ggttgcctcg cgatatcagc cattcctccg ctgaatggtt ttatcagcga atggtacacc
     1621 tggcagtcgc tgttctcact aagtcgtgtg gaagccgtag cgctacaact tgcgggtcct
     1681 attgctatgg taatgctggc agtcactggt gggctggcag taatgtgctt cgtcaaaatg
     1741 tacggtatta ctttctgtgg tgcgccgcgc agtacacacg ctgaagaggc acaggaagtg
     1801 ccaaatacga tgatcgtcgc catgctactg ctcgcggcac tctgcgtatt aattgcgctt
     1861 agtgccagtt ggctggcacc gaagataatg catattgccc atgcgtttac caatacccct
     1921 cccgtcactg tcgccagcgg aatagcactt gtacccggca cgtttcatac acgggtcact
     1981 ccttcattac tgttgctgtt actactggcg atgcctttgc tgcctggcct ttactggctg
     2041 tggtgtcgtt cgcgccgcgc agcgtttcgt cgcacaggag atgcctgggc atgcggctac
     2101 ggctgggaaa acgcgatggc tccgtcaggc aatggcgtga tgcagccgct gcgtgtggtc
     2161 ttctctgcgt tatttcgtct acgacaacag ctcgacccta cgctgaggct aaataaagat
     2221 cttgcgcacg tcaccgccag ggctcagagc acagaaccct tctgggatga gcgggtgatc
     2281 cgccccatcg tgagcgccac ccaacggctg gccaaagaaa tacagcatct gcaaagcggc
     2341 gactttcgtc tctattgcct gtatctagtt gccgcactgg ttgtgctgct aatcgctatt
     2401 gccgtctaag gaaatcacca tgagacaaac tctttgcgac ggatatctgg tcatttttgc
     2461 gttagcacag gccgtgattc tgctgctgct aaccccgctt tttacgggta tttcccggca
     2521 gatacgcgcg cgtatgcact cccgccgcgg gccggggatc tggcaggatt atcgcgagat
     2581 ccacaaactg tttaaacgcc aggaagttgc gcctatatct tcaggtctga tgttccgcct
     2641 gatgccgtgg gtattaatca gcagcatgct ggtgctggcg atggccctac cactttttat
     2701 taccgtttcc ccttttgcgg gcggcggcga tctgatcacc cttatctatc ttcttgccct
     2761 gtttcgtttt ttctttgctc tttccggact ggataccgga agcccgtttg cgggagtcgg
     2821 tgccagtcgc gagttgacgc tcggcattct ggtcgaaccc atgctcattc tctcactgct
     2881 ggtattggcg ctgatagcag gttccacgca tatcgagatg atcagcaata cgctggcaac
     2941 gggctggaac tcgccgctaa ccaccgtact ggcgttactg gcctgtggtt ttgcctgctt
     3001 cattgagatg ggaaaaattc cctttgatgt tgctgaagca gaacaggaat tacaggaagg
     3061 cccgctgacc gaatattccg gtgccgggct ggcgctagcg aaatgggggc tggggctgaa
     3121 acaggtcgtg atggcagcac tgtttgtggc cctgtttctg ccctttgggc gcgcgcaaga
     3181 actttctctc gcctgcctgc tgacttcact tgtcgttacg ctgctcaagg ttttgctgat
     3241 ttttgtactg gcctcaatcg cagaaaacac gctggcacgc gggcgttttt tactcattca
     3301 ccatgtgacc tggcttggct tcagccttgc tgcgcttgca tgggtcttct ggttaaccgg
     3361 tctgtaagga gcactgacgg aatatggaaa atcttgctct gacgacgtta atgctgcctt
     3421 ttatcggcgc actggtcgtt tcgttttcgc cacaacgtcg ggccgccgaa tgggggtttt
     3481 gttcgccgca ctgaccacgc tgtgcatgtt gtcgctgatc tccgcgtttt atcaggccga
     3541 taaagttgcc gtcacgttga cgttggtcaa cgtgggggat gtggcattgt ttggcctggt
     3601 cattgatcgc gtgagtacgc tgattctgtt tgtggtggtg tttctcggtt tgctggtcac
     3661 gatctactcc acgggttatc tgacggataa aaatcgcgaa cacccgcata acggcacgaa
     3721 tcgttattac gcatttttgc tggtgtttat cggcgcgatg gcgggactgg tactctcctc
     3781 gacgctgctc ggtcagttgt tgttttttga aattagggcg gctgctcctg ggcgttgatc
     3841 agttattacc agagcgataa agcgcagcgt tcaacactaa aagcgttgct tatcacccat
     3901 atcggttcgt tggggttgta tcttgccgcc gccacgctgt ttttgcagac cggaacgttt
     3961 gtgcttagcg cgatgagcga gttacatggc gacgcacgtt atctggttta tggcggcatc
     4021 ctgtttgccg cgtgggggaa atcggcccag ctaccgatgc aagcgtggct accggacgca
     4081 atggaagcgc caacaccgat cagagcctat ctccacgccg catcgatggt gaaagtgggc
     4141 ggctggcact ggagggcagc atcgcctaca tcgtcaacca cgcgttcgct aaaagcctgt
     4201 ttttccttgt agcaggtgcg ctgagttaca gctgcggcac gcgcttgttg ccgcgtctgc
     4261 gtggcgtatt gcactccctg ccgttgccag gcgtgggttt ctgcgtggca gcgctggcga
     4321 ttaccggtgt gccgccgttc aacggcttct tcagtaaatt cccgctgttt gccgccggtt
     4381 ttgcgttgtc agtggagtac tggatcctgc tgcccgccat gattctgctg atgattgaat
     4441 cggtcgccag tttcgcctgg tttattcgct ggtttggtcg cgttgtgcct ggcaaaccga
     4501 gcgaggccgt cgccgatgcc gcaccgctgc cagggtcaat gcgcctggtg ttgattgtac
     4561 tgattgtgat gtcgctgatt tccagcgtaa tcgccgcgac ctggttgcag taaggagatg
     4621 atgaatgatc ggttctatga tcgtaaataa tctggcggga ctgatgatgc tgacatcgct
     4681 gtttgtgatt agcgtcaaaa gctatcgcct gtcatgcgga ttttacgcct gccagtcgct
     4741 ggtgctggtg tctattttcg ccactctctc gtgcctgttc gccgcagagc aactgctgat
     4801 ctggtccgcc agcgccttta tcaccaaagt gctgctggta ccgttaatca tgacttacgc
     4861 tgcacgaaat attccccaga acatcccgga aaaagcgtta ttcggtccgg caatgatggc
     4921 actgctcgcg gcgttaattg tcctgctttg cgcatttgtc gttcagcccg tgaagctacc
     4981 gatggctacc gggctgaaac cggcgctggc ggtagcgtta ggtcattttc tgcttggcct
     5041 gctgtgcatt gtcagccagc gcaatatcct gcggcaaatt tttggttact gcctgatgga
     5101 aaacggctcc catctggtgc tggcgcttct tgcctggcga gcaccggaac tggtggaaat
     5161 aggtatcgct accgacgcca tcttcgccgt cattgtgatg gtgttactgg caagaaaaat
     5221 atggcgtacc cacggcacgc tggacgtgaa caacttgacc gcgctgaagg gataatgaga
     5281 tgagttattc tgtgatgttc gctttactcc tgctcacgcc gctgcttttt tcgctgctct
     5341 gttttgcctg ccggaaacgg gggctctctg cgacttgtac ggtgactgta ttacatagct
     5401 tagggatcac actgctgctg attctggcac tctgggtggt ccaaactgcc gctgatgcag
     5461 gagaaatatt cgctgcggga ctgtggcttc atattgatgg tctgggcggt ttgttcctcg
     5521 ccattcttgg tgtgattggc tttctcaccg gtgtttactc gattggctac atgcgtcatg
     5581 aagtggcaca cggcgagctt tcacccgtta cactgtgcga ttactacggt ttcttccatc
     5641 tgtttttgtt caccatgctg ctggttgtta ccagcaataa cctgattgtg atgtgggcgg
     5701 cgatcgaagc caccacctta agctcggcgt ttctggtagg catttacggt cagcgttcat
     5761 cgctggaatc agcatggaag tacatcatta tttgtactgt tgatgtcgct tttggtctgt
     5821 tcggtaccgt gctggtatac gccaacgccg ccagcgttat gccgcaggca gaaatggcga
     5881 tattctggag cgaggttctt aagcaatcgt ccttgcttga cccaacatta atgctgttgg
     5941 cctttgtgtt tgtgctaatt ggctttggta ccaaaaccgg gctatttccc atgcacgcct
     6001 ggctgccgga tgctcacagt gaagcgccga gtccggtcag cgccctgctc tccgccgtat
     6061 tgctgaactg cgcgctgttg gtgctgattc gctattacat cattatttgc caagccatcg
     6121 gcagcgattt ccccaaccgg ttgttgctca tcttcggcat gttgtcggtt gccgtggcgg
     6181 catttttcat tctggtacag cgggacatta agcgtctgct ggcgtactcc agcgtggaga
     6241 acatggggct ggtcgcggtg gcgctaggca ttggcgggcc gctgggaatt tttgccgcgc
     6301 tgctgcacac cttaaaccac agtctggcaa aaacgctgct gttctgcggt tccggcaatg
     6361 tactgctcaa gtacggcacg cgcgatctca acgtcgtctg tgggatgctc aaaatcatgc
     6421 catttaccgc cgtgctgttt ggcggcggtg cgctggcgct ggcagggatg ccgcccttca
     6481 acatttttct tagcgaattt atgaccgtta ccgcaggact ggcacgtaat cacctgctga
     6541 ttatcgtcct gctgttattg ctgttaacgc tggtgctggc gggcctggta cggatggctg
     6601 cgcgggtgtt aatggcgaaa ccgccgcagg ccgttaaccg gggtgatctc ggctggttga
     6661 ccacctcgcc aatggtgatt ctgctggtca tgatgctggc gatgggaacg catattccac
     6721 aacctgtcat caggatcctg gcgggcgctt ccactatagt cctctcaggg acgcacgacc
     6781 tgcctgcaca acgtagcacc tggcatgatt ttttgccttc aggcaccgca tctgtttcgg
     6841 agaaacacag tgaacgttaa ttcatcgtca aatagtggcg aagcgattct cgccgccctg
     6901 aaaacgcagt tccccggcgc ggtactggat gaagagcgac aaacgcctga acaggtcacc
     6961 attacggtga aaatcaatct gctgcctgac gttgtacatt atctttatta tcaacatgat
     7021 ggctggcttc cagtcctgtt tggcaacgac gagcggacac ttaacggtca ttacgcggtt
     7081 tattatgccc tttcaatgga aggggccgaa aaatgctgga tcgtggtgaa ggcactggtc
     7141 gatgccgaca gtcgggagtt tccgtcagtc acaccgcgcg tccctgccgc ggtctggggc
     7201 gagcgagaaa ttcgcgatat gtacgggctg attccggttg gcctgccgga tcagcgtcgc
     7261 ctggtgttgc ccgatgactg gccggaagat atgcatccgc tgcacaaaga tgcgatggat
     7321 tatcgactgc gccctgaacc gacgacagat tccgaaacgt atgcgtttat caatgagggc
     7381 aacagcgatg cgcgggtgat ccctgtcggc ccgctgcata tcacctccga tgaaccgggt
     7441 cacttccgct tgtttgtgga tggcgagcaa attgtcgatg ctgattaccg cctgttttat
     7501 gtccatcgag gcatggagaa actggcagaa acgcggatgg gctacaacga agtgaccttc
     7561 ttatcggacc gcgtgtgtgg gatttgcggt tttgcccaca gtgtggccta taccaactcg
     7621 gttgaaaatg cactggggat tgaggtgccg caacgagcgc ataccattcg ctcgattctg
     7681 ctggaagtcg aacggctaca cagtcatttg ctcaaccttg gcctctcctg ccattttgtt
     7741 ggttttgata ccggctttat gcaatttttc cgcgtgcggg aaaagtcgat gacgatggcg
     7801 gaattgctga ccgggtcgcg taaaacctac ggtctgaatc tgattggtgg tgttcgccgc
     7861 gatattctca aagagcaacg tctgcaaacg ctgaaactgg tgcgcgagat gcgcgccgac
     7921 gtgtcggagc tggtagagat gctgcttgct acgccgaata tggaacaacg cactcagggc
     7981 attggcattc tcgaccgaca aatcgcccgt gattatagcc ctgtagggcc gctgatccgc
     8041 ggcagtggtt ttgcccgtga tttgcgcttt gatcacccct acgccgacta cggcaatatt
     8101 ccaaaaacac tgtttacctt caccggcggc gatgttttct cccgcgtgat ggtccgtgtc
     8161 aaagagacgt ttgattcgct ggcaatgctg gaatttgccc tcgacaacat gccggatacc
     8221 ccactgctga ccgaaggctt tagctataaa cctcacgcat tcgcgctggg ctttgttgaa
     8281 gcgccacgcg gtgaagacgt gcactggagc atgctcggtg ataaccaaaa attgttccgc
     8341 tggcgctgcc gtgccgccac ctacgccaac tggccggtgt tgcgttacat gctgcgcggc
     8401 aataccgttt ctgacgcacc gctgattatc ggtagccttg atccctgcta ctcctgtacc
     8461 gaccgtgtga cgctggtaga tgtgcgcaag cgccagtcaa aaaccgtgcc gtataaagag
     8521 atcgaacgct acggcattga tcgtaaccgt tcgccgctga agtaaggaca gaagatgctg
     8581 aagttactga aaactattat gcgcgccgga accgcgacgg tgaaatatcc cttcgcgcca
     8641 ctggaggtca gcccaggctt tcgcgggaaa ccggacctga tgcccagcca atgtattgcc
     8701 tgcggcgcct gtgcttgtcc ggcaaatgcg ctgactatcc agaccgacga ccagcaaaat
     8761 tcgcgcacct ggcagctcta tctggggcgt tgtatttact gcggacgttg tgaagaagtg
     8821 tgcccgacca gagccatcca gcttaccaat aactttgaac tgaccgtcac caataaagcc
     8881 gatctctata cccgcgcgac gttccatcta caacgttgca gccgttgcga acgcccgttt
     8941 gccccgcaaa aaaccgtcgc actggctgct gaattgttgg cacagcaaca aaatgcgcca
     9001 caaaaccgcg aaatgttgcg ggcgcaagcg agcgtctgcc cggagtgcaa acaacgcgcg
     9061 acgctgatca acgacgatac agatgtaccg ctggtggcta aggagcagct atgagtccag
     9121 tgcttacaca acatgtcagc cagcccatca cgctggatga gcaaacgcaa aagatgaagc
     9181 ggcatttgct acaggatatc cgtcgctcag cctacgttta tcgcgtcgat tgcggcggct
     9241 gcaacgcctg tgaaatcgaa atttttgctg ccatcacccc cgtattcgac gcagaacgtt
     9301 ttggcattaa ggttgtttca tcaccgcgtc acgccgatat tttgttattt actggcgcag
     9361 tcacccgggc gatgcgtatg cctgcacttc gggcgtatga gtctgccccc gatcataaaa
     9421 tctgtgtttc ctacggcgcg tgcggtgtcg gcggcggtat tttccacgat ctctacagcg
     9481 tctggggcgg cagcgacacc attgtcccca ttgatgtttg gatccccggc tgcccgccaa
     9541 caccggccgc caccattcac ggtttcgccg tggcgctcgg tttgctgcaa cagaagattc
     9601 acgctgtgga ttatcgcgat cccaccgggg tgactatgca accgttgtgg ccacagatcc
     9661 cgccatcaca gcgtatcgcc attgagcgag aagcgcggcg gctggcgggc tatcgtcagg
     9721 ggcgagaaat ttgcgatcgg ctcctgcgcc atttaagcga cgatcctaca ggaaatcggg
     9781 ttaacacctg gttgcgcgat gccgacgatc cacgtctcaa tagtatcgtt cagcaactct
     9841 ttcgcgtact ccgggggtta catgactgaa gagtgcgggg aaattgtttt ctggacgctg
     9901 cgaaaaaagt ttgtcgccag tagcgacgag atgccggaac accgctctca ggtaatgtat
     9961 tactcgctgg ctatcggcca tcacgttggc gtgattgatt gtctgaatgt cgccttccgc
    10021 tgcccactga cggaaaacga agattggctt gcacaggtcg aagaggagca agcccgacgt
    10081 aagatgctgg gggtgatgac ctttggtgag attgttattg acgccagcca caccgccctg
    10141 ttgacccggg cattcgcgct actggcagat gacgcgacgt ctgtgtggca ggcgcgtagc
    10201 attcaattca ttcatctgtt ggatgaaatt gtgcaggaac cggccatcta tctgatggcc
    10261 agaaaaattg cgtgagaagg atttctcatt aataaggact gttgatggct atgtcagacg
    10321 aggcgatgtt tgccccgcca caaggaataa caattgaagc ggtaaacgga atgctcgcgg
    10381 agcggttagc acagaaacac ggtaaggcgt ctttattacg cgccttcatc ccgatgccgc
    10441 cgccgttcag cccggtacaa cttattgaac tgcatgttat caaaagcaac ttctattacc
    10501 gctaccatga tgatggcagc gatgtgacgg caacaacaga gtatcagggc gagatggtcg
    10561 attattcgcg tcacgccgtc cttctcggca gtagtggaat ggcggagcta cgctttattc
    10621 gtacccacgg cagccgtttt actccctagg attgcacact gtttaactgg ctggcacgca
    10681 ttatcactcc ggttctgcaa tcatggctca atgatgaaga acaacaggtg gcgctgcgtt
    10741 tgctggagaa agatcgcgat catcatcggg tactggttga tattactaat gcagtgctgt
    10801 cacatcttga tctcgacgat ctgatcgctg acgtcgctcg tgagatccat cattttttcg
    10861 gtctggcttc agtcagtatg gtactgggcg atcatcgaaa gaacgagaag tttagcctgt
    10921 ggtgcagcga tctttctgcc tcacattgtg cgtgtctgcc acgcaatatg cctggcgaca
    10981 gtgtattgct gacacaaacg ctacaaaccc gacaaccgac cttgacgcac cgtgcagacg
    11041 atctgtttct ctggcaacgc gacccgttat tactcttact tgcatctaac ggctgcgaat
    11101 ctgcgctcct tataccgctt acctttggca accatacacc gggtgcattg ttgctggcgc
    11161 atacctcttc cactctcttt agtgaggaaa actgccagct actacaacac atagccgatc
    11221 gcatcgctat tgccgttggc aatgccgatg cctggcgtag catgaccgat ttgcaggaaa
    11281 gtttgcagca agaaaactac cagcttagcg agcagctcct ttcgaatctg ggcatcggtg
    11341 acattatcta tcaaagccag gcaatggaag acctgctcca gcaggtagat attgtagcga
    11401 agagcgacag tacggtgttg atttgtggtg aaaccggaac cggcaaagag gtgatcgcca
    11461 gagcgctcca tcaacttagc acgcgacgcg acaaaccgct ggtcaaaatc aactgcgctg
    11521 ccatccccgc cagtcttctg gaaagtgagt tattcggtca tgacaaaggg gcgtttactg
    11581 gtgcgattaa tacacatcgt ggtcgttttg aaattgccga tggcggcacg ttgtttctcg
    11641 atgaaattgg cgatctgccg ttagaacttc agcctaaact gctgcgcgta ttgcaggaac
    11701 gggagattga gcgtctcggc gggagtagaa cgatcccggt gaatgtcaga gtcattgccg
    11761 ccaccaaccg tgatttgtgg caaatggttg aagatcgcca gtttcgcagc aatctctttt
    11821 atcgcctgaa tgtcttccca ttggaattgc cgccgctacg cgaccgtccg gaagatatcc
    11881 ctcttttagc aaaacatttc acgcaaaaaa tggcgcgcca tatgaatcgc gcaattgacg
    11941 ccatcccgac cgaggcgcta cgccagttga tgtcgtggga ctggccgggc aacgtgcacg
    12001 agctggaaaa cgtgattgag cgagcggtac tgctgactcg cggtaacagt ctgaatttac
    12061 atcttaatgt ccgacaaagc cgtttactgc cgacgctaaa tgaagattca gcgcttcgca
    12121 gttcaatggc gcagttgctg cacccgacga cgccagagaa tgacgaagaa gaacgtcagc
    12181 gcattgttca ggtattgcga gaaaccaatg gcattgttgc cgggccccgt ggcgcggcga
    12241 cacgattagg gatgaagcgc accacgctgc tgtcacgaat gcagcgtctg gggatctcgg
    12301 ttcgcgaggt gttgtaatct gcttttgcag gagtatgcat gagaaacaaa ctctctttcg
    12361 acttgcagtt gagcgccaga aaagcggcaa tcgctgaacg gattgccgtc cataaaattg
    12421 cccgcagtaa agtgtcggtc tttttaatgg cgatgtccgc tggcgtgttt atggcgatcg
    12481 gatttacttt ttacctttcc gttatcgccg atgccccgtc ttcacaggca ttaacccatc
    12541 tggtgggcgg cctttgcttt acactcggct ttattttgct ggcggtttgc ggcacagcct
    12601 gttcacctcg tcggtaatga cggtgatagc aaaaagtcgg ggcgttatta gttggcgaac
    12661 ttggctgatt aacgcacttc tggtggcctg tggtaatctg gcaggtattg cctgtttcag
    12721 tttgttaatc tggttttccg ggctggtgat gagtgaaaac gcgatgtggg gagtcgcggt
    12781 tttacactgc gccgagggca aaatgcatca tacatttact gaatctgtca gcctcggcat
    12841 tatgtgcaat ctgatggttt gcctggcgct gtggatgagt tattgcgggc gttcgttatg
    12901 cgacaaaatc gtcgccatga ttttgcccat caccctgttt gtcgccagtg gctttgagca
    12961 ctgtatcgcc aatttgtttg tgattccgtt cgccattgcc attcgccatt tcgccccccc
    13021 ccttctggca actggcgcac agtagcgcag acaattttcc ggcactgacg gtcagccatt
    13081 ttattaccgc caatctgctc ccggtgatgc tgggtaatat tatcggcggt gcagtgctgg
    13141 tgagtatgtg ttatcgggct atttatttac gtcaggaatc ctgaaaaatc agcccggcga
    13201 aacagttcgt cgggctgaag attattcttg cgcgatttgc ccatcgggcc aggcgtggat
    13261 cacggctttg atcagcgtcg ccaatggaat ggcgaagaat acgccccaga atccccacaa
    13321 accaccgaag atcaccaccg ataaaataat caccagcgga tgcaggttaa ccgcttcgga
    13381 gaacaacacc ggtactagca ggttgccgtc cagcgcctga ataatcagat acaccgcgaa
    13441 gcagctccag aattccgtgc ctgcgccaaa ctggaatagc gccacgccaa ccaccggaat
    13501 ggtcaccaca aatgcgccaa tgtacggaat aagaaccgag aagccgacca gcaccgccag
    13561 cagcagcgaa tagttcagcc caaagagcaa gaaccccagc caggtggcga tccccaccac
    13621 gatcatctcc agcactttgc cgcggatata gttggtgatt tgttgattca tctccttcca
    13681 cacctgtcct gccagtccac ggttgcgcgg cagcacccga cgaacggcgt tcagcatctg
    13741 ctctttgtct ttcagcagga agaagaccat caatggcacc agcaccagat agacggcaat
    13801 ggtcagcaaa ccgaccagcg aggcgaggga aattttcacc accgaatcgc ccatggtcag
    13861 catccgactg cgcatatttt cggccattgc atcaataatg cccgcgtcca ttaacgccgg
    13921 atagcggcgc ggcaacgtgg cggcaaagtc agaaagctta ttgagcatcc ccggcatatc
    13981 gcggattaag tagatgccct gttgccaggc gataggcagt accacgaacg ccatcagtag
    14041 caatataccg acaaaaacca ccaatacaat cgacgtcgcc cagcggcggg agcagccaat
    14101 agattgcagg cgcacggttg gccattccag caaataggcc agcacaatag ccaccagcaa
    14161 cggagcaagc aggccactaa agaaaaagat aatgccaaat ccggcaacta aaataaccag
    14221 caaggcaatc gcttccgggt cgctaaaacg gcggcgatac cattgcatca acatttcgag
    14281 cataaaaacc ttccctgaac ctcaagagcg ggattgcgat ccgcaattgt atcgaaatgt
    14341 cacaaaaaag acttcgcttt ttatgacgga ttcaggaaac tgaaaagtca tttgagtggg
    14401 ctaatcttcg ccgttacact caaaggcggc gcggtgggaa cgatatttca cagtatcggt
    14461 caaatgacta tcttcagaaa tacaggatag aggttatgtt caggcagttg aaaaaaaacc
    14521 tggttgcaac cctcattgct gctatgacca ttggtcaggt agccccggcg tttgccgaca
    14581 acgcagacac cttgccggat atgggaacct ccgcaggaag cacgctttcc attggtcagg
    14641 aaatgcagat gggcgactat tatgtccgcc agctacgcgg cagcgcgccg ttaattaatg
    14701 acccgctgtt aacgcaatat attaattcgc tggggatgcg tctggtttcg catgccaatt
    14761 cggttaagac accgtttcat ttttttctaa tcaacaacga cgaaattaac gcctttgctt
    14821 tctttggcgg caacgtggtg ctgcactctg ccctgttccg ttattccgat aacgaaagtc
    14881 aactggcttc agttatggcg cacgaaatct cccacctcac ccaacgtcac ctggcgcgag
    14941 cgatggaaga tcagcagcgc agcacgccgc tgacctgggt cggcgcgtta ggttctattt
    15001 tactggcgat ggccagtccg caggcgggga tggcggcgct gaccggtaca ctggcgggaa
    15061 cgcgtcaggg gatgatcagt ttcacccagc aaaatgaaca ggaagcggac cgcattggta
    15121 ttcaggtgct gcaacgctcg ggattcgatc cgcaggcgat gccaaccttc ctcgaaaaat
    15181 tactcgatca ggcgcgttac tcctcgcgcc cgccggaaat tttattgact cacccgttgc
    15241 cggaaagtcg tctggcagat gcccgcaacc gtgctaatca gatgcgaccg atggtggtgc
    15301 agtcgtcgga agatttctat ctggcgaaag cgcgcacact ggggatgtat aattccggac
    15361 gtaaccagct caccagtgat ttgctggatg aatgggcgaa aggaaacgtt cgtcagcaac
    15421 gagcggcgca atatggtcgt gctttacagg cgatggaagc caataaatac gacgaggcgc
    15481 gtaaaacgct gcaaccgtta ctggcggcag aacctggcaa cgcatggtat ctcgatctgg
    15541 ctaccgatat cgatcttggg caaaacaaag ccaatgaggc aatcaatcgc ctgaaaaatg
    15601 cccgtgattt gcgcaccaat ccggtgttgc agctcaacct ggcaaacgct tatctgcaag
    15661 gcggtcaacc acaagaagcg gccaatattc tcaatcgcta cacctttaat aataaagatg
    15721 acagcaacgg ctgggattta ctggcacagg cggaagccgc gctaaataac cgcgatcagg
    15781 agctggctgc gcgagcagaa ggttatgcgc tcgccggacg actcgatcag gccatttcgc
    15841 tgttgagtag cgccagttcg caggtgaaat taggcagcct gcaacaagcg cgttacgatg
    15901 cgcgcatcga ccagttgcgc cagctgcagg aacgctttaa gccttatacc aagatgtaat
    15961 tcgcattaaa ggaagaacaa tgaccaaaca ggtaaaaatc taccataacc cacgctgttc
    16021 aaagagccgg gaaacgctga acctgctgaa agaaaacggc gtggagccag aagtggtact
    16081 ctaccttgag acacccgccg atgcggcaac gctgcgcgat ttgctgaaaa tgctggggat
    16141 gaatagcgcc cgtgaattga tgcgccagaa agaggatctt tataaagaac tgaacctggc
    16201 tgacagttcg cttagcgaag aggcgctgat tcaggcaatg gtggataatc cgaagctgat
    16261 ggagcgcccg attgtggtcg cgaatggcaa agcgcggatt ggtcgtccac cggagcaggt
    16321 actggaaatc gtgggttaag atgtgctcca tcgctagttg aagcacattg ccggatgcga
    16381 cgcttgccat gtcttatccg gcctacgaat actatggatt aacttcgcgt agttcggata
    16441 aggcgttcgc gccgcatccg acaataaaca ccttatctac aacttcagaa tttctttcac
    16501 aaacggaatg gtcagcttac gttgcgcggt aatcgacgca cgatccaact gatccaacgt
    16561 cataaatagc gtgcgcattt ctctgtcgag ccgcttcagc aagaaacgcc ccacatcttc
    16621 cggcagttca aaaccacgca aacgcgcgcg taactgtagc gcctgcaact tatcttcatc
    16681 agaaagtggc tgcaatttgt agatctgccc ccagtcgagt cgcgacgcga gatccggtaa
    16741 tcccagattc aactgccgcg gtggacgatc gccggtgatc aacaaccgtg ttttgcccga
    16801 ttccagaatt cgattgtaga gatcgaaaat cgccatctcc cacaactcat cgcctgcaat
    16861 acactcaatg ttgtcgatac aaaccagcga caaatgctcc ataccgtcga gcacttccgg
    16921 aacaaaccaa gtgcgtttat ccagcgggac atagcccacc gcatcgccac gctgcgacaa
    16981 ttccgcgcaa gccgcgtgca gcagatggct gcgccccgcg ccttcgcgtg cccagagata
    17041 gatgtaaccg ctatgttcct gacgcagcac gttttgcagc gcggccagta aagaggagtt
    17101 atcccccggc cagaaacttg caaaggtttc gtcgtcagga agataaagtg gcaaagagag
    17161 ctgtgccggt gtgttcagag atacctcaac caggatttca caaaatcgcg agaagtttac
    17221 cacagaatcc catgatgttt gaaccgggca gcaacactgc ccggtcggta cattatttgt
    17281 ctgttatatc cgcctcttct gcgtccagca ccacttcttc agggcgcagc acactgatca
    17341 gtttgaaaat caaacttaag ccgataccga cgatggtcgc cagcgccata ccttttaact
    17401 ccgccgcgcc gatgtttacc ttcgcgccac tgacgccgat gatcaaaatc acggaagtca
    17461 ggatcaggtt ctgtgctttg ttgtaatcca ctttcgattc gatcaaaaca cgaataccgg
    17521 aagcaccgat gacaccataa agcagcagcg aaacgccgcc catcaccggc aatgggatca
    17581 tctggatagc ggcagccagt ttaccgacgc aggaaagcag gatagcgaaa atcgccgccc
    17641 cgccgataac ccaggtactg taaacacggg tgatcgccat cacgccaatg ttttctccgt
    17701 aagtggtatt tggcgtggag ccaaagaagc cggagatcac ggtcgacagg ccgttagcaa
    17761 acatcgaacg gtgcagacct ggatcgcgca gcagatcttt tttgacgata ttagccgtta
    17821 ctaccaggtg ccctacgtgt tcggcaataa ccactaacgc cgctggcaga atagtcagaa
    17881 tggcaaacca ctcgaagcgc ggcgtataga gggttggcag cgcaaaccag tgagcattaa
    17941 taatcggcgt ggtatcgaca attcccattg cgaaagagag cgcgtagccc accagcacgc
    18001 caattaaaat cgggataatt gccaggaaac cacgaaacag cacggaacct aaaaccgtga
    18061 ccgccagggt ggtaatagag atgatgatgg ttttggagtc tggcgtttgc ccttcagccg
    18121 ggagtaaacc cgccataccg gcagctacgc ccgccagctc cagaccgatg acggcaacga
    18181 ttgcgcccat tgccgcaggt ggaaacagca cgtccagcca gccggtcccc gctttcttca
    18241 cgataaaaga aaccaggcag aacagcacgc cgcacataat aaagccgccc agcgcgactt
    18301 cataccctaa cggcaacagt aacaataccg gtgaaataaa ggcaaagctg gaaccaagat
    18361 aagccggaat tttcccttta cagatgaaga gatacagcag cgttccaata ccgttaaata
    18421 acagtacagt cgccgggtta atatgaaata agacgggcac caggacggtt gcaccaaaca
    18481 tggcgaacaa atgttgcaaa ctaagcggga ttgtctgtaa aagtggcggt ctttcactca
    18541 ccccgatagc acggcgcgtc atagtattat cctctgtatt atgtgttata ggcgctttac
    18601 tcaaaaaaaa gccgactctt aaagtcggct ttaattattt ttattcttta tttcgtacca
    18661 aagattttgt caccggcatc gccgaggccc ggaataatgt atccgtgctc gttcagtccc
    18721 tgatcaatcg atgcggtata cagttcgacg tccgggtgcg ctttttccag cgcagcgata
    18781 ccttctggcg cagcgaccag caccagaact ttgatgctgc tgcagcccgc ttttttcagc
    18841 aggtcgatgg tcgcgataac ggaaccaccg gttgccagca ttgggtcaac gatcagcgcc
    18901 atacgctcat cgatgttaga aaccagtttc tggaagtacg gtaccggctc cagcgtttct
    18961 tcattacggt acataccgac aacgctgatg cgcgcgctcg gaacattttc cagcacaccg
    19021 tccatcatac caagacccgc acgcagaatt ggcacaacgg taattttctt acctttgatc
    19081 tggtcgattt ctaccgggcc gttccagcct tcgatagtta ctttttccgt ttcgaggtcg
    19141 gcggtcgctt cgtaagtcag caggctaccc acttcggaag cgagttcgcg aaagcgcttg
    19201 gtgctgatat cttgctcacg catcagtccc agcttgtgtt tgacgagtgg gtgtttgact
    19261 tccacgatct tcatactctt tctcctttga ggggcagcca caaaaaaatc gacggattat
    19321 acctcctttc ttcaaggcgg caatattctt ttcgttgact ttagtcaaaa tgataacgat
    19381 ttgagataaa gttattttat attcaaatgg ttatgaaaga agatcattcc atccgaaaac
    19441 taacctttgc cctggcacaa gtcttctttc gccgcgcgtc tggggaaaag acgtgcaaaa
    19501 aggttgtgca aagcagcctc gcaaacgttt gctttccctg ttagaattgc gccgaatttt
    19561 atttttctac cgcaagtaac gcgtggggac ccaagcagtg accgataaaa cctctcttag
    19621 ctacaaagat gccggtgttg atattgacgc gggtaatgct ctggttggaa gaatcaaagg
    19681 cgtagtgaag aaaacgcgtc gtccggaagt gatgggcggt ctgggcggct tcggtgcgct
    19741 gtgtgcattg ccgcaaaaat atcgtgaacc cgtgctggtt tccggcactg acggcgtagg
    19801 taccaagctg cgtctggcaa tggacttaaa acgtcacgac accattggta ttgatctggt
    19861 cgccatgtgc gttaatgacc tggtggtgca aggtgcagaa ccgctgtttt tcctcgacta
    19921 ttacgcaacc ggaaaactgg atgttgatac cgcttcagcg gtgatcagcg gcatcgcgga
    19981 aggttgtctg caatcgggct gttcactggt gggtggcgaa acggcagaaa tgccggggat
    20041 gtatcacggt gaagattacg atgtcgcggg tttctgcgtg ggcgtggtag aaaaatcaga
    20101 aatcatcgac ggctctaaag tcagcgacgg cgatgttctg attgcactcg gttccagcgg
    20161 tccgcactcg aacggctatt cgctggtgcg caaaattctt gaagtcagcg gttgtgatcc
    20221 gcaaaccacc gaacttgatg gtaagccatt agccgatcat ctgctggcac cgacccgcat
    20281 ttacgtgaag tcagtgctgg agttgattga aaaggtcgat gtgcatgcca ttgcgcacct
    20341 gaccggcggc ggcttctggg aaaacattcc acgcgtattg ccagataata ctcaggcagt
    20401 gattgatgaa tcttcctggc agtggccgga agtgttcaac tggctgcaaa cggcaggtaa
    20461 cgttgagcgc catgaaatgt atcgcacctt caactgcggc gtcgggatga ttattgccct
    20521 gcctgctccg gaagtggaca aagccctcgc cctgctcaat gccaacggtg aaaacgcgtg
    20581 gaaaatcggt atcatcaaag cctctgattc cgaacaacgc gtggttatcg aataatgaat
    20641 attgtggtgc ttatttccgg taacggaagt aatttacagg caattattga cgcctgtaaa
    20701 accaacaaaa ttaaaggcac cgtacgggca gttttcagca ataaggccga cgcgttcggc
    20761 cttgaacgcg cccgccaggc gggtattgca acgcatacgc tcatcgccag cgcgtttgac
    20821 agtcgtgaag cctatgaccg ggagttgatt catgaaatcg acatgtacgc acccgatgtg
    20881 gtcgtgctgg ctggttttat gcgcattctc agcccggcgt ttgtctccca ctatgccggg
    20941 cgtttgctga acattcaccc ttctctgctg ccgaaatatc ccggattaca cacccatcgt
    21001 caggcgctgg aaaatggcga tgaagagcac ggtacatcgg tgcatttcgt caccgatgaa
    21061 ctggacggtg gcccggttat tttacaggcg aaagtcccgg tatttgctgg tgatacggaa
    21121 gatgacgtca ccgcccgcgt gcaaacccag gaacacgcta tttatccact ggtgattagc
    21181 tggtttgccg atggtcgtct gaaaatacac gaaaacgccg cgtggctgga tggtcaacgt
    21241 ctgccgccgc agggctacgc tgccgacgag taatgccccc gtagttaaag cgccagctct
    21301 gccgctggcg tttttcaatt cacctgtaaa tcgcaagctc cagcagtttt tttccccctt
    21361 ttctggcata gttggacatc tgccaatatt gctcgccata atatccaggc agtgtcccgt
    21421 gaataaaacg gagtaaaagt ggtaatgggt caggaaaagc tatacatcga aaaagagctc
    21481 agttggttat cgttcaatga acgcgtgctt caggaagcgg cggacaaatc taacccgctg
    21541 attgaaagga tgcgtttcct ggggatctat tccaataacc ttgatgagtt ctataaagtc
    21601 cgcttcgctg aactgaagcg acgcatcatt attagcgaag aacaaggctc caactctcat
    21661 tcccgccatt tactgggcaa aattcagtcc cgggtgctga aagccgatca ggaattcgac
    21721 ggcctctaca acgagctatt gctggagatg gcgcgcaacc agatcttcct gattaatgaa
    21781 cgccagctct ccgtcaatca acaaaactgg cttcgtcatt attttaagca gtatctgcgt
    21841 cagcacatta cgccgatttt aatcaatcct gacactgact tagtgcagtt cctgaaggat
    21901 gattacacct atctggcggt ggaaattatc cgtggagaca ccatccgtta cgcgctgctg
    21961 gagatcccat cagataaagt gccgcgcttt gtgaatttac cgccagaagc gccgcgtcga
    22021 cgcaagccga tgattcttct ggataacatt ctgcgttact gccttgatga tattttcaaa
    22081 ggcttctttg attatgacgc gctgaatgcc tattcaatga agatgacccg cgatgccgaa
    22141 tacgatttag tgcatgagat ggaagccagc ctgatggagt tgatgtcttc cagtctcaag
    22201 cagcgtttaa ctgctgagcc ggtgcgtttt gtttatcagc gcgatatgcc caatgcgctg
    22261 gttgaagtgt tacgcgaaaa actgactatt tcccgctacg actccatcgt ccccggcggt
    22321 cgttatcata attttaaaga ctttattaat ttccccaatg tcggcaaagc caatctggtg
    22381 aacaaaccac tgccgcgttt acgccacatt tggtttgata aagcccagtt ccgcaatggt
    22441 tttgatgcca ttcgcgaacg cgatgtgttg ctctattatc cttatcacac ctttgagcat
    22501 gtgctggaac tgctgcgtca ggcttcgttc gacccgagcg tactggcgat taaaattaac
    22561 atttaccgcg tggcgaaaga ttcacgcatc atcgactcga tgatccacgc cgcacataac
    22621 ggtaagaaag tcactgtggt ggttgagtta caggcgcgtt tcgacgaaga agccaacatt
    22681 cactgggcga agcgcctgac cgaagcaggc gtgcacgtta tcttctctgc gccggggctg
    22741 aaaattcacg ccaaactgtt cctgatttca cgtaaagaaa acggtgaagt ggtccgttac
    22801 gcacacatcg ggaccgggaa ctttaacgaa aaaaccgcgc gtctttatac tgactattcg
    22861 ttgctgaccg cagatgcgcg tatcaccaac gaagtacggc gggtatttaa ctttattgaa
    22921 aacccatacc gcccagtgac atttgattat ttaatggtgt caccgcaaaa ctctcgccgt
    22981 ctgttatatg aaatggtaga ccgcgaaatc gccaacgcgc agcaagggct gcccagtggt
    23041 atcaccctga agctaaataa ccttgtcgat aaaggcctgg ttgatcgtct gtatgcggcc
    23101 tccagctccg gcgtaccggt taatctgctg gttcgcggaa tgtgttcgct gatccccaat
    23161 ccggaaggca ttagcgacaa cattcgtgcc atcagtattg ttgaccgtta ccttgaacat
    23221 gaccgggttt atatttttga aaatggcggc gataaaaagg tctacctttc ttccgccgac
    23281 tggatgacgc gcaatattga ttatcgtatt gaagtggcga caccgctgct cgatccgcac
    23341 ctgaagcagc gggtgctgga catcatcgac atattgttca gcgatacggt caaagcacgt
    23401 tatatcgata aagaactcag taatcgctac gttccccgcg gcaatcgccg caaagtacgg
    23461 gcgcagttgg cgatttacga ctacatcaaa tcactcgaac aacctgaata accctatgcc
    23521 aatacacgat aaatcccctc gtccgcagga gtttgctgcg gtcgatcttg gttcaaacag
    23581 ttttcacatg gtcatagccc gtgtggtaga tggtgccatg cagattattg gccgcctgaa
    23641 acagcgagtg catctggcgg acggcctggg gccagataat atgttgagtg aagaggcaat
    23701 gacgcgcggt ttgaactgtc tgtcgctgtt tgccgaacgg ctacaagggt tttctcctgc
    23761 cagcgtctgt atagtcggca cccatacgct gcgtcaggcg ctgaacgcca ctgactttct
    23821 gaaacgcgtg gaaaaggtca ttccctaccc gattgaaatt atttccggta atgaagaagc
    23881 ccgtctgatt tttatgggcg tggaacatac ccaaccggag aaaggtcgca aactggttat
    23941 tgatattggc ggcggatcta cggaactggt gattggtgaa aatttcgaac cgattctcgt
    24001 tgaaagccgc cggatgggtt gtgtcagctt tgcccagctt tacttccctg gcggggtcat
    24061 caataaagag aattttcagc gcgctcgtat ggcggcagca caaaaactgg aaactttaac
    24121 ctggcaattc cgtattcagg gctggaacgt ggcaatgggc gcttccggta ccataaaagc
    24181 cgcccatgaa gtgttaatgg aaatgggcga gaaagacggg ataattaccc cggaacgtct
    24241 ggaaaaactg gtaaaagaag ttttacgtca ccgtaatttc gcatcgctga gtttaccggg
    24301 tctttccgaa gagcggaaaa cagtcttcgt tcctggactg gcgattttat gcggtgtgtt
    24361 tgatgcttta gccatccgtg aactgcgcct ttctgacggg gcgttacgcg aaggcgtact
    24421 gtacgaaatg gaaggacgtt tccgtcatca ggatgtgcgt agtcgcaccg ccagcagcct
    24481 cgccaaccag tatcacatcg acagcgaaca ggcccgacgg gtgctggata ccactatgca
    24541 aatgtacgaa cagtggcggg aacagcaacc gaagctggcg catccgcaac tggaggcgct
    24601 actgcgatgg gccgccatgc tgcatgaggt cgggttgaat atcaaccaca gcggtttgca
    24661 tcgccactcc gcttatattc tgcaaaacag tgacttgccg ggttttaatc aggaacagca
    24721 gctgatgatg gcgacactgg tgcgctatca ccgcaaagcg attaaactcg acgatctgcc
    24781 gcgctttacc ttgtttaaga agaaacagtt cctgccactg attcagctat tgcgccttgg
    24841 cgtattactc aacaatcaac gtcaggcaac caccacaccg ccaacattga cactgattac
    24901 tgatgacagt cactggacac tgcgtttccc gcatgactgg tttagtcaga atgcgttggt
    24961 actgcttgat ctggaaaagg agcaagaata ctgggaaggc gtggctggct ggcggttgaa
    25021 aattgaagaa gaaagtacac ctgaaatcgc cgcttaatgc tttgcgggcc gacgagaaat
    25081 gtcggcccgc attattcagg cactttcgcg aatgggtt
//
LOCUS       DAJVSY010000047        25003 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.047, whole genome shotgun sequence.
ACCESSION   DAJVSY010000047 DAJVSY010000000
VERSION     DAJVSY010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25003
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.047"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..808
                     /locus_tag="OQQ19_001741"
     CDS             <1..808
                     /locus_tag="OQQ19_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sugar porter family MFS transporter"
                     /protein_id="HCS1803401.1"
                     /translation="PRWLMSRGKQEQAESILRKIMGNTLATQAVQEIKHSLDHGRKTG
                     GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVIN
                     LTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF
                     AMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHN
                     GFSYWIYGCMGVLAALFMWKFAPETKGKTLEELEALWEPETKKTQQTATL"
     gene            complement(852..1250)
                     /gene="psiE"
                     /locus_tag="OQQ19_001742"
     CDS             complement(852..1250)
                     /gene="psiE"
                     /locus_tag="OQQ19_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HCS1803402.1"
                     /translation="MTSLSRPRVEFISTILQTVLNLGLLCLGLILVVFLGKETVHLAD
                     VLFAPEQTSKYELVVYFLYFEFIALIVKYFQSGFHFPLRYFVYIGITAIVRLIIVDHK
                     SPLDVLIYSAAILLLVITLWLCNSKRLKRE"
     gene            1520..1798
                     /locus_tag="OQQ19_001743"
     CDS             1520..1798
                     /locus_tag="OQQ19_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803403.1"
                     /translation="MKRNLIKVVKMKPYFAALMLSVSVLPAYAGPLGTADKADLPQSN
                     VSSPMMAQSLRQPDLQPISTDRKTECFRLYTPDRKPGVNCVPDGSTGH"
     gene            complement(1845..3941)
                     /locus_tag="OQQ19_001744"
     CDS             complement(1845..3941)
                     /locus_tag="OQQ19_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbH domain-containing protein"
                     /protein_id="HCS1803404.1"
                     /translation="MKKRHLLSLLALGISMACYGETYPAPIGPSQSDFGGVGLLQTPT
                     ARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTY
                     KDKAFDLKLRLWEESYWLPQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGY
                     LGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRL
                     KLEYEGNNYQQDFAGKLEQKSKFNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFN
                     DLRPSYNDNARPQYQPQPQDAILQHSVVANQLTLLKYNVGLADPQIQAKGDTLYVTGE
                     QVKYRDSREGIIRANRIVMNDLPDGIKTIRITENRLNMPQVTTETDVASLKNHLAGEP
                     LGHETKLAQKRVEPVVPQSTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVMG
                     MADLWLTDHLLTTGSLFANLANNYDKFNYTNPPQDSHLPRVRTHVREYVQNDVYVNNL
                     QANYFQHLGNGFYGQVYGGYLETMFGGAGAEVLYRPLDSNWAFGLDANYVKQRDWRSA
                     KDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVV
                     GGYATITNVLKEEYGEGDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGR
                     KFQLYDMTSDRSVNFR"
     gene            complement(3956..4678)
                     /locus_tag="OQQ19_001745"
                     /pseudo
     CDS             complement(3956..4678)
                     /locus_tag="OQQ19_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418452.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis GfcC family protein"
     gene            complement(4675..5313)
                     /locus_tag="OQQ19_001746"
     CDS             complement(4675..5313)
                     /locus_tag="OQQ19_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbF family lipoprotein"
                     /protein_id="HCS1803405.1"
                     /translation="MKRPALILICLLLQACSATTKELGNSLWDSLFGTPGVQLTDDDI
                     QNMPYASQYMQLNGGPQLFVVLAFAEDGQQKWVTQDQATLVTQHGRLVKILLGGDNLI
                     EVNNLAADPLIKPAQIVDGATWTRTMGWTEYQQVRYATARSVFKWDGTDTVKVGSDET
                     LVRVLDEEVSTDQARWHNRYWIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ"
     gene            complement(5427..5669)
                     /locus_tag="OQQ19_001747"
     CDS             complement(5427..5669)
                     /locus_tag="OQQ19_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803406.1"
                     /translation="MKKVLYGIFAISALAATSAWAAPVQVGEAAGSAATSVSAGSSSA
                     TSVSTVSSAVGVALAATGGGDGSNTGTTTTTTTSTQ"
     gene            complement(6131..7780)
                     /gene="pgi"
                     /locus_tag="OQQ19_001748"
     CDS             complement(6131..7780)
                     /gene="pgi"
                     /locus_tag="OQQ19_001748"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HCS1803407.1"
                     /translation="MKNINPTQTAAWQALQKHFDEMKDVTIADLFAKDGDRFSKFSAT
                     FDDQMLVDYSKNRITEETLAKLQDLAKECDLAGAIKSMFSGEKINRTENRAVLHVALR
                     NRSNTPILVDGKDVMPEVNAVLEKMKTFSEAIISGEWKGYTGKAITDVVNIGIGGSDL
                     GPYMVTEALRPYKNHLNMHFVSNVDGTHIAEVLKKVNPETTLFLVASKTFTTQETMTN
                     AHSARDWFLKAAGDEKHVAKHFAALSTNAKAVGEFGIDTANMFEFWDWVGGRYSLWSA
                     IGLSIVLSIGFDNFVELLSGAHAMDKHFSTTPAEKNLPVLLALIGIWYNNFFGAETEA
                     ILPYDQYMHRFAAYFQQGNMESNGKYVDRNGNVVDYQTGPIIWGEPGTNGQHAFYQLI
                     HQGTKMVPCDFIAPAITHNPLSDHHQKLLSNFFAQTEALAFGKSREVVEQEYRDQGKD
                     PATLDYVVPFKVFEGNRPTNSILLREITPFSLGALIALYEHKIFTQGVILNIFTFDQW
                     GVELGKQLANRILPELKDDKEISSHDSSTNGLINRYKAWRG"
     gene            8305..9654
                     /gene="lysC"
                     /locus_tag="OQQ19_001749"
     CDS             8305..9654
                     /gene="lysC"
                     /locus_tag="OQQ19_001749"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-sensitive aspartokinase 3"
                     /protein_id="HCS1803408.1"
                     /translation="MSEIVVSKFGGTSVADFDAMNRSADIVLSDANVRLVVLSASAGI
                     TNLLVALAEGLEPGERFEKLDAIRNIQFAILERLRYPNVIREEIERLLENITVLAEAA
                     ALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDVA
                     ALAELAALQLLPRLNDGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVD
                     IWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFV
                     GSSKDPRAGGTLVCNKTENPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILAR
                     HNISVDLITTSEVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALVALI
                     GNDLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE"
     gene            9906..10178
                     /locus_tag="OQQ19_001750"
     CDS             9906..10178
                     /locus_tag="OQQ19_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3811 domain-containing protein"
                     /protein_id="HCS1803409.1"
                     /translation="MALPRITQKEMTEREQRELKTLLDRARIAHGRVLTNSETNSIKK
                     EYIDKLMVEREAEAKKARQLKKKQAYKPDPEASFSWSANTSTRGRR"
     gene            complement(10311..11183)
                     /gene="rluF"
                     /locus_tag="OQQ19_001751"
     CDS             complement(10311..11183)
                     /gene="rluF"
                     /locus_tag="OQQ19_001751"
                     /EC_number="5.4.99.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2604) synthase RluF"
                     /protein_id="HCS1803410.1"
                     /translation="MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD
                     QVKPGDIVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFP
                     IGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPIL
                     GTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPL
                     GEWRDLTDDELIDLFKLIENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASN
                     GKRFTSPGRKKKGR"
     gene            11531..12478
                     /locus_tag="OQQ19_001752"
     CDS             11531..12478
                     /locus_tag="OQQ19_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709812.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HCS1803411.1"
                     /translation="MENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKR
                     GRDQGIVTIAINYDYNENLWLEQQLKQKFGLKDVVVVSGNDEDEETQLAMMGLHGAQL
                     LDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLT
                     YSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYWDNLDVALVGIGSPAIR
                     DGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQAR
                     YSIGIAMSEEKYSGIVGALRGKYINCLVTNSSTAELLLK"
     gene            12548..13354
                     /locus_tag="OQQ19_001753"
     CDS             12548..13354
                     /locus_tag="OQQ19_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1803412.1"
                     /translation="MQTWLNLQDKIIIVTGGASGIGLAIVEELLAQGANVQMVDIHGG
                     DGQYEGHKGYQFWPTDISSAKEVNHTVAEIIQRFGRIDGLVNNAGVNFPRLLVDEKAP
                     AGQYELNEAAFEKMVNINQKGVFLMSQAVARQMVKQHDGVIVNVSSESGLEGSEGQSC
                     YAATKAALNSFTRSWSKELGKHGIRVVGIAPGILEKTGLRTPEYEEALVWTRNITVEQ
                     LREGYTKNAIPIGRAGRLAEVADFVCYLLSERASYITGVTTNIAGGKTRG"
     gene            13364..13771
                     /locus_tag="OQQ19_001754"
     CDS             13364..13771
                     /locus_tag="OQQ19_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sorbose transporter subunit IIA"
                     /protein_id="HCS1803413.1"
                     /translation="MVNAIFCAHGKLACAMLESVQMVYGDARVEAVEFVPGENAGDIV
                     AKLEKLVSIHNQDEWLIAVDLQCGSPWNAAAMLAMRNPRLRVISGLSLPLALELVDNQ
                     DSMNVDELCEHLTQIAKQTCVVWKQLATAEEDF"
     gene            13771..14265
                     /locus_tag="OQQ19_001755"
     CDS             13771..14265
                     /locus_tag="OQQ19_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system
                     mannose/fructose/N-acetylgalactosamine-transporter subunit
                     IIB"
                     /protein_id="HCS1803414.1"
                     /translation="MNITLARIDDRLIHGQVTTVWSKVANAQRIIICNDEVYNDEVRR
                     TLLRQAAPPGMKVNVVNIEKAVAVYHNPQYQDETVFYLFTRPQDALAMVRQGVKIDTL
                     NIGGMAWRPGKKQLTKAVSLDDDDINAFHELNNLGVILDLRVVASDPSINIIDKINEQ
                     LIAN"
     gene            14331..15128
                     /locus_tag="OQQ19_001756"
     CDS             14331..15128
                     /locus_tag="OQQ19_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HCS1803415.1"
                     /translation="MEISTLQIIAIFLFSCIAGMGSVLDEFQTHRPLIACTVIGLILG
                     DLKTGIILGGTLELIALGWMNVGAAQSPDSALASIISAILVIVGQQSIATGIAIALPV
                     AAAGQVLTVFARTITVVFQHAADKAAEEARFRTLDILHVSAFGVQALRVAIPALIVSL
                     FVSADMVSNMLSAIPEFVTRGLQIAGGFIVVVGYAMVLRMMGVKYLMPFFFLGFLAGG
                     YLDLSLLAFGGVGVIMALVYIQLNPQWRKAEPQLQATASTALDQLDD"
     gene            15139..15981
                     /locus_tag="OQQ19_001757"
     CDS             15139..15981
                     /locus_tag="OQQ19_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000437910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HCS1803416.1"
                     /translation="MEQRKITRSDLVSMFLRSNLQQASFNFERIHGLGFCYDMIPAIK
                     RLYPLKEDQVAALRRHLVFFNTTPAVCGPVIGVTAAMEEARANGAEIDDGTINGIKVG
                     LMGPLAGVGDPLVWGTLRPITTALGASLALSGNILGPLLFFFIFNAVRLAMKWYGLQL
                     GFRKGVNIVSDMGGNVLQKLTEGASILGLFVMGVLVTKWTSINVPLVVSQTHAADGST
                     VTMTVQNILDQLCPGLLALGLTLLMVRLLNKKINPVWLIFALFGLGIIGNALGFLSRF
                     FAPA"
     gene            16015..17244
                     /gene="sorE"
                     /locus_tag="OQQ19_001758"
     CDS             16015..17244
                     /gene="sorE"
                     /locus_tag="OQQ19_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-sorbose 1-phosphate reductase"
                     /protein_id="HCS1803417.1"
                     /translation="MKTTALRLYGKRDLRLETFDLPEMQEDEILATVVTDSLCLSSWK
                     EANLGENHKKVPDDVATNPIIIGHEFCGDILAVGKKWQHKFQPGQRYVIQANLQLPDR
                     PDCPGYSFPWVGGEATHVVIPNEVMEQDCLLAYDGETYFEGSLVEPLSCVIGAFNANY
                     HLQEGSYNHTMGIRPQGRMLILGGTGPMGLLAIDYALHGPVNPSQLVITDTDNDKLSY
                     ARKHYPSEPQTLIHYLNAADAAFDTLMALSGGHGFDDIFVFVPNEGLVTLASSLLATD
                     GCLNFFAGPQDKHFSAPINFYDVHYAFTHYVGTSGGNTDDMRAAVKLIEEKKVQAAKV
                     VTHILGLNAAGETTLELPAVGGGKKLVYTGKYLPLTSLTQIQDQALAAILARHQGIWS
                     GEAEQYLLTHAEAISHD"
     gene            17627..18316
                     /gene="pepE"
                     /locus_tag="OQQ19_001759"
     CDS             17627..18316
                     /gene="pepE"
                     /locus_tag="OQQ19_001759"
                     /EC_number="3.4.13.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase PepE"
                     /protein_id="HCS1803418.1"
                     /translation="MELLLLSNSTLPGKAWLEHALPLIAEQLQGRRSAVFIPFAGVTQ
                     TWDDYTAKTAAVLAPLGVSVTGIHSVVDPVAAIENAEIVIVGGGNTFQLLKQCRERGL
                     LAPITDVVKRGALYIGWSAGANLACPTIRTTNDMPIVDPQGFDALNLFPLQINPHFTN
                     ALPEGHKGETREQRIRELLVVAPELTIIGLPEGNWITVSKGHATLGGPNTTYVFKAGE
                     EAVPLEAGHRF"
     gene            complement(18407..20038)
                     /locus_tag="OQQ19_001760"
     CDS             complement(18407..20038)
                     /locus_tag="OQQ19_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HCS1803419.1"
                     /translation="MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRTVLSRSVEKK
                     PLAFCAGIGVTALVQSSNATTMLVTSFVAQDLVALAPALVIVLGADVGTALMARILTF
                     DLSWLSPLLIFIGVIFFLGRKQSRAGQLGRVGIGLGLILLALELIVQAVTPITQANGV
                     QVIFASLTGDILLDALIGAMFAIISYSSLAAVLLTAALTAAGIISFPVALCLVIGANL
                     GSGLLAMLNNSAANAAARRVALGSLLFKLVGSLIILPFVHLLAETMGKLSLPKAELVI
                     YFHVFYNLVRCLVMLPFVDPMARFCKTIIRDEPELDTQLRPKHLDVSALDTPTLALAN
                     AARETLRIGDAMEQMMEGLNKVMHGEPRQEKELRKLADDINVLYTAIKLYLARMPKEE
                     LAEEESRRWAEIIEMSLNLEQASDIVERMGSEIADKSLAARRAFSLDGLKELDALYEQ
                     LLSNLKLAMSVFFSGDVTSARRLRRSKHRFRILNRRYSHAHVDRLHQQNVQSIETSSL
                     HLGLLGDMQRLNSLFCSVAYSVLEQSDEDEGRDEY"
     gene            complement(20258..23941)
                     /gene="metH"
                     /locus_tag="OQQ19_001761"
     CDS             complement(20258..23941)
                     /gene="metH"
                     /locus_tag="OQQ19_001761"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HCS1803420.1"
                     /translation="MSSKVEQLRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFAD
                     WPCDLKGNNDLLVLSKPEVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAE
                     INFAAAKLARACADEWTARTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDQLV
                     AAYCESTKALVEGGADLILIETVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDA
                     SGRTLSGQTTEAFYNSLRHAEALTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAG
                     LPNAFGEYDLDADTMAKQIREWAQAGFLNIVGGCCGTTPQHIAAMSRAVEGLAPRKLP
                     EIPVACRLSGLEPLNIGDDSLFVNVGERTNVTGSAKFKRLIKEEKYSEAQDVARQQVE
                     NGAQIIDINMDEGMLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQG
                     KGIVNSISMKEGVDAFIHHAKLLRRYGAAVVVMAFDEQGQADTRARKIEICRRAYKIL
                     TEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQDFIGACEDIKRELPHALISGGVSNVS
                     FSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQLAIYDDLPAELRDAVEDVILNRR
                     DDGTERLLELAEKYRGSKTDDTDNAQQAEWRSWEVNKRLEYSLVKGITEFIEQDTEEA
                     RQQATRPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEASK
                     EQGKTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNA
                     DLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVY
                     VQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGRKKPRTPPVTLEAARDNDF
                     AFDWQAYTPPVAHRLGVQEVEASIETLRNCIDWTPFFMTWSLAGKYPRILEDEVVGVE
                     AQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYRDETRTHVINVSHHLR
                     QQTEKTGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAFEAQHDDYNKIMV
                     KALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGYPACPEHT
                     EKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQVEDYA
                     RRKGMSVSDVERWLAPNLGYDAD"
     gene            24141..24965
                     /gene="iclR"
                     /locus_tag="OQQ19_001762"
     CDS             24141..24965
                     /gene="iclR"
                     /locus_tag="OQQ19_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418442.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate bypass operon transcriptional
                     repressor IclR"
                     /protein_id="HCS1803421.1"
                     /translation="MVAPIPAKRGRKPAVATAPATGQVQSLTRGLKLLEWIAESNGSV
                     ALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAHAFMVGSSFLQSRNLL
                     AIVHPILRNLMEESGETVNMEVLDQSDHEAIIIDQVQCTHLMRMSAPIGGKLPMHASG
                     AGKAFLAQLSEEQVTKLLHRKGLHAYTHATLVSPVHLKEDLAQTRKRGYSFDDEEHAL
                     GLRCLAACIFDEHREPFAAISISGPISRITDDRVTEFGAMVIKAAKEVTLAYGGMR"
BASE COUNT         5879 a         6611 c         6534 g         5979 t
ORIGIN      
        1 tcctcgctgg ctgatgtcac gcggcaagca agaacaggcg gaaagtatcc tgcgcaaaat
       61 tatgggcaac acgcttgcaa ctcaggcagt acaggaaatt aaacactccc tggatcatgg
      121 ccgcaaaacc ggtggtcgtc tgctgatgtt tggcgtgggc gtgattgtca tcggcgttat
      181 gctctccatc ttccagcaat ttgtcggcat caatgtggtg ctgtactacg cgccggaagt
      241 gttcaaaacg ctgggggcca gcacggatat cgcgctgttg cagaccatta ttgtcggagt
      301 tatcaacctc accttcaccg ttctggcaat tatgacggtg gataaatttg gtcgtaagcc
      361 actgcaaatt atcggcgcac tcggaatggc aatcggtatg tttagcctcg gtaccgcgtt
      421 ttacactcag gcaccgggta ttgtggcgct actgtcgatg ctgttctatg ttgctgcctt
      481 tgccatgtcc tggggtccgg tatgctgggt actgctgtcg gaaatcttcc cgaatgctat
      541 tcgtggtaag gcgctggcaa tcgcggtggc ggcccagtgg ctggcgaact acttcgtctc
      601 ctggaccttc ccgatgatgg acaaaaactc ctggctggtg gcccatttcc acaacggttt
      661 ctcctactgg atttacgggt gtatgggcgt tctggcagca ctatttatgt ggaaatttgc
      721 cccggaaacc aaaggtaaaa cccttgagga gctggaagcc ctctgggaac cggaaacgaa
      781 gaaaacacaa caaactgcta cgctgtaatc ttcctgtcca gcacgccgcg ccagttcggc
      841 gtgctgtctt tttactcccg cttcagccgt ttcgaattac acagccacag agtgatcacc
      901 agtaacagga tcgcagccga gtagatcaac acatccagtg gcgatttatg atcgacgatg
      961 atcaagcgca caatggcggt gatcccaata tagacaaagt aacgtagcgg gaagtgaaaa
     1021 ccggactgaa agtacttcac aatcagcgcg ataaattcga aatagagaaa gtaaaccacc
     1081 agctcatatt tgctggtttg ttctggcgcg aacagcacat ctgccagatg caccgtttct
     1141 ttgccgagga agacaaccaa aatcaggccg aggcacagca ggccaagatt gagtacggtc
     1201 tgcaaaatgg tggagataaa ctccacgcgc ggacgagaga gtgacgtcat agcagtacct
     1261 ccttcacagt ggcgagcttc ctgtataacg caaaaatgtg acggagatct atattttttg
     1321 tgtatgtttt gttcaacctg gatttggagc gcgcctccac caaagccgga tatacctacc
     1381 cgtaggccgg ataagccgcg cctggcggcg catccggcaa gacaaaccgc acccaagccg
     1441 gtaattcaaa aatcacccat tcaggtgatt cccagccacc agcaatgcgc gaaaaatcga
     1501 caatgttcct ctggaacaaa tgaaacgtaa cctgataaag gtggtaaaaa tgaagcctta
     1561 ttttgctgct ttgatgttat cagtctctgt tcttcctgct tatgctggtc cgctcggtac
     1621 tgctgataaa gccgacctac cgcaaagcaa tgtctccagc ccaatgatgg cccagtcgct
     1681 caggcaacca gacctgcaac cgatatcgac ggacaggaag acagaatgtt ttcgccttta
     1741 cacaccagat cgcaaaccgg gggtgaactg cgttcctgat ggctcgacag gccattaaga
     1801 atgaaggtgc cagtgagtgc gaaaactggc acctttccca tgacttagcg gaaattgacg
     1861 ctacggtcgc tggtcatgtc atacaactgg aacttacgcc caagttgctg accaccgtca
     1921 cgcgtcagcg gcgtccagcc aatcgccgca cggctgcgtg tcgggccaga cgagaagaga
     1981 tccaacggta ccgagacata cacgcctttg gtgaagtccc cttcgccgta ctcctctttc
     2041 aaaacgttgg tgatcgtggc atagccaccc accaccacgc cgctgtcaaa gcgtttggcg
     2101 atctccagcg tgccgccttt atcccctgcc agatactgcc cgacgctggc tttcaccaac
     2161 acgtcctggg cgaaagatgg cgtccagtag gcggtcagat gtccggtttt cacgctgtag
     2221 tcggtgaatt tcatcatatc ttttgcacta cgccagtcgc gctgtttaac gtagttggca
     2281 tccagaccaa acgcccagtt actgtccagc ggacgataca acacttcggc ccccgcaccg
     2341 ccaaacatgg tttcgagata acctccatag acctgaccgt agaagccgtt gcccagatgc
     2401 tggaagtagt tggcttgcag gttattcaca tagacatcgt tctgcacata ctcgcgcaca
     2461 tgggtacgaa cgcgcggtaa gtgcgagtcc tgcggcggat tggtgtagtt aaacttgtcg
     2521 tagttgttgg caagatttgc aaacaggctg ccggtggtca gcagatggtc cgtcagccac
     2581 aaatctgcca ttcccatcac gcccagctga tacatgtaaa agttttccgg gccaccgacc
     2641 gactggttca gcaccggatc gatatggaaa tcaaagcgtg atttgtcgat ataccagccc
     2701 tgctcggtgg actgcggaac cactggctcg acgcgttttt gcgccagctt cgtttcgtgg
     2761 cccaacggct ctccggcgag atgatttttc aggctggcga catcggtttc cgtcgtcacc
     2821 tgcggcatgt taagacgatt ttccgtaatg cggatcgttt tgatcccatc cggcagatcg
     2881 ttcatcacga tccgattagc acggatgatc ccttcgcgcg aatcacgata tttcacctgc
     2941 tcgccggtga catacagcgt atcgcctttc gcctggatct gcggatcggc aagtccgaca
     3001 ttgtatttca acagcgttaa ctgattcgcc accaccgaat gctgcaaaat ggcatcctgc
     3061 ggctgcggtt gatattgcgg gcgggcgtta tcgttgtaag acgggcgcag atcgttaaag
     3121 ttggtgcgca gcgtgacgcc aaacataaag gtgttgccac gttcatagct aaggttaacg
     3181 tcggcccaat cggtaacgcg ataaatcgca ccgacgttaa acttactttt ttgctccagc
     3241 ttcccggcaa aatcctgctg ataattattg ccttcatact ccagtttcag gcgcagcggt
     3301 tgccagggcg tctggtattc cacgccgcca aacagtgagg caggaccgtg gaacatctgg
     3361 ctaccgtcga tagatcccgc ctgtttgtag ctgttatcgc gatagcaata tttatcactg
     3421 gctgaacaga gcggattttt cacattaccg ctggtgccca gataacccca gcccaggccg
     3481 agcgtaaaat cgaacggccc ccaggctttg ctggcaacaa gatattccgc atcaaacagc
     3541 cccgtaccgc cgatatccct cgcaccaacc gccacttgcg gcagccagta actctcttcc
     3601 cacaaacgca gtttgagatc gaaggcttta tctttatacg tttgatcgcc agagaacgct
     3661 tcgacgctgc tgtactgccg ggtgcgcacg tcggtgtagc gcagcgttgt ttccagccac
     3721 gggaagagtt gcactgaagc tgagtaataa cggtactgat cgttatcgcg atagttcagg
     3781 ctcaactccc cttcccgcgc catgcgtgcg gtgggcgttt gtaataatcc tacgccaccg
     3841 aaatccgact gcgacgggcc aatgggcgca ggatatgttt cgccgtagca agccatgcta
     3901 atgcccagcg ccagtaagct aagcagatgt ctttttttca ttattggggt atccgctacg
     3961 tcagagtctg aagaatgtcg gcgttaaggg catcaggcgt ctcactccag acggagtccg
     4021 cgaggccaac ataaataatg ctgccgggca tcggctctac gtgacgcttg ttccagtaag
     4081 ccaccggcgc tttttgcgtg cgtccgtccg ggtaaaccac ccacgcgtag ctgcgatccg
     4141 caccgctaag caggttctgc ccggagagat agctcgccac gtcgcgacct ggagtgaatg
     4201 gctgcttgcc aggacggctg ataagcccga acaacgtgac cgtggacggc ggtggtccga
     4261 cccacagcgt gtagttgccc tgcaacggtg ggttaccgcg ttcggcaacg cgcacgatat
     4321 cgggatcaag attgattttt tgcctgcccg tcactttcaa cgcctgaatt tgctggcgta
     4381 aggcgttaat ggcggcggca tcgtcggcgc tggagtctgc ggcctgttca gccagccgtg
     4441 tcagcaacgc ctgctgctga cgcaatgctg ccgccgttgc cagctcttcg ctaatcaccg
     4501 caccgggcca ccagttgttt gccagccgcg gttagcctac cagatcgatt aaatgctctg
     4561 cgcctgttag tgttttggcc tcactgctgc cattgctgaa caccttgacg gttcctgccg
     4621 cgaagaccga tgacgctccc acactcaaaa gcaacgcgac aaaagtttgt ttaatcattg
     4681 ttttgccgcc ttgatgagag tggttttcac cgggaaataa tccgcgccga gatactgttc
     4741 cgactggcga atttgccctt cgctgtcgat ccagtagcgg ttatgccagc gcgcctggtc
     4801 ggtggagact tcttcgtcca gcacgcgaac cagggtttca tcgctgccga ctttgacggt
     4861 atcggtgcca tcccatttga agactgagcg tgcggtggcg tagcgtacct gctggtactc
     4921 ggtccagccc atcgtgcgcg tccatgttgc accatcaaca atttgtgcgg gtttaatcag
     4981 cgggtcggcg gcaaggttat tcacttcaat caggttgtcg ccgccaagca aaatcttcac
     5041 cagacgacca tgttgtgtga caagagtggc ttgatcctga gtgacccatt tttgttgtcc
     5101 gtcttcagcg aaggccagca ccacaaacaa ttgcggcccg ccattaagct gcatgtactg
     5161 gctggcgtag ggcatatttt gaatatcatc gtccgtcagc tgtacgcctg gcgtgccgaa
     5221 cagactgtcc cacagtgaat tgcccagctc tttagtcgtg gctgaacagg cctgtaatag
     5281 caggcagata agaatgagtg caggtcgctt cacgactctt ctccagaggg gcagaataac
     5341 cacaccggag tgtggttatg gtaaatccct tcatacttca agccacagat gcaatgactc
     5401 aaattatttt ggggatacat actttattac tgggtactgg tggtcgtggt tgtggtggtc
     5461 ccggtattag aaccatcacc gccaccggtt gccgcgagcg cgacacccac cgccgagctt
     5521 acggtgctga cgctggtcgc ggaggaacta cccgccgaaa ccgacgttgc tgccgaccct
     5581 gccgcttcgc ccacctgtac aggtgcagcc cacgcagaag tcgccgcaag cgcagatatg
     5641 gcaaaaatgc catacagaac ttttttcata acaatttccc ttcattgaat gaatggagat
     5701 ttacccaaaa acatttcggg cgggatcgag tatacacaac taaagcatgc gaattacggc
     5761 gcggggaatt agcgatggcg ttttaggata attggaatga atatcaaata taagcttcaa
     5821 cttatattta aataacaata aaaatcataa acttaaaata aaaacaaaag taattaatct
     5881 gcgtattctc cgaaataaac aacgattaaa aatctatttt aggattaacc tcacggtatg
     5941 atttccgtta aatcacagac aaggggattt atctgataaa acaatgccga cttattgtcg
     6001 gcattgtttt taaggttatt taactcctca tactatgcat taatgtcgat attggcatca
     6061 ggctccggtt gccggatgcg gcgtaaacgc cttatccggc ctacatatcg gcatcaggca
     6121 cgcatgatga ttaaccgcgc cacgctttat agcggttaat cagaccattg gtcgagctat
     6181 cgtggctgct gatttctttg tcatctttca gctctggcag aatacggttc gccagttgtt
     6241 tacccaactc cacgccccac tggtcgaagg taaagatgtt caggatcacg ccctgagtaa
     6301 agattttgtg ctcatacagc gcaatcaacg cccccaggct gaacggagtg atttcgcgca
     6361 gcaggatgga gttggtcggg cggttacctt cgaacacttt gaacggcacc acgtagtcaa
     6421 gcgttgccgg atctttaccc tgatcgcgat attcctgctc aaccacttcg cgggatttac
     6481 caaacgccag cgcttcggtc tgggcgaaga agttagacag cagtttctgg tggtgatcag
     6541 agagcgggtt atgggtgata gccggggcga tgaaatcgca cggtaccatt ttggttccct
     6601 ggtggatcag ctggtagaac gcgtgctgac cgttagtgcc tggttcaccc cagataatcg
     6661 ggccagtctg gtaatccaca acgttaccgt tacggtcaac atacttaccg ttggactcca
     6721 tattgccctg ctggaagtac gccgcgaaac ggtgcatata ctggtcatac ggcagaatcg
     6781 cttcagtttc cgcaccaaag aaattgttgt accagatgcc aatcagcgcc aacaggacag
     6841 gcaggttttt ctcggcaggc gtggtggaga aatgcttgtc catcgcgtgt gcgccagaaa
     6901 gcagttcaac gaagttatca aagccgatgg agagaacaat cgacaggcca atcgctgacc
     6961 acaaagagta acggccgccg acccagtccc agaactcgaa catgttggca gtatcaatac
     7021 caaactcgcc aacggctttg gcattggtgg aaagcgccgc aaagtgtttt gcaacgtgtt
     7081 tttcatcacc tgccgctttc aggaaccagt cacgcgcgct atgggcgttg gtcatagttt
     7141 cctgagtggt gaaggtttta gatgctacca agaacagcgt ggtttccggg tttacttttt
     7201 tcagcacttc agcgatgtga gtcccatcga cgttagaaac aaagtgcatg ttcaggtgat
     7261 ttttgtacgg acgcagtgct tcggtcacca tgtacgggcc gaggtcagaa ccaccgatcc
     7321 cgatgttcac tacgtcagtg attgctttgc cggtataacc cttccactca ccggagataa
     7381 tcgcttccga gaaggttttc atcttctcca gcaccgcgtt gacttccggc attacgtctt
     7441 tgccatcaac cagaatcggg gtattgctac ggttacgcag cgctacgtgc agcacggcgc
     7501 ggttttcagt gcggttgatc ttctcgccag agaacatcga cttaatcgcg cccgccagat
     7561 cgcactcttt cgccagatcc tgtaatttcg ccagcgtctc ttcagtgatg cggtttttgg
     7621 agtaatccac cagcatctga tcgtcgaatg ttgcggagaa cttagaaaaa cgatcgccgt
     7681 ctttagcaaa aagatcggcg atcgtaacgt ctttcatttc atcgaagtgt ttctgtagtg
     7741 cctgccaggc agcggtctgc gttggattga tgtttttcat tagcaatact cttctgattt
     7801 tgagaattgt gactttggaa gattgtagcg ccagtcacag aaaaatgtga tggttttagt
     7861 gccgttagcg taatgttgag tgtaaaccct tagcgcagtg aagcatttat tagctgaact
     7921 actgaccgcc aggagtggat gaaaaatccg catgaccccg tcgttgacaa ccgccccgct
     7981 caccctttat ttataaatgt actacctgcg ctagcgcagg ccagaagagg cgcgttgccc
     8041 aagtaacggt gttggaggag ccagtcctgt gataacacct gagggggtgc atcgccgagg
     8101 tgattgaacg gctggccacg ttcatcatcg gctacagggg ctgaatcccc tgggttgtca
     8161 ccagaagcgt tcgcagtcgg gcgtttcgca agtggtggag cacttctggg tgaaaatagt
     8221 agcgaagtat cgctctgcgc ccacccgtct tccgctcttc ccttgtgcca aggctgaaaa
     8281 tggatcccct gacacgaggt agttatgtct gaaattgttg tctccaaatt tggcggtacc
     8341 agcgtagctg attttgacgc catgaaccgc agcgctgata ttgtgctttc tgatgccaac
     8401 gtgcgtttag tagtcctctc ggcttctgct ggtatcacta atctgctggt cgctttagcg
     8461 gaagggctgg aacctggcga gcgattcgaa aaactcgacg ctattcgcaa catccagttt
     8521 gccattctgg aacgtctgcg ttacccgaac gttatccgtg aagagattga acgtctgctg
     8581 gagaacatta ctgttctggc agaagcggcg gcgctggcaa cgtctccggc gctgacagat
     8641 gagctggtca gccacggcga gctgatgtcg accctgctgt ttgtcgaaat cctgcgcgaa
     8701 cgcgatgttc aggcacagtg gtttgatgta cgtaaagtga tgcgtaccaa cgaccgattt
     8761 ggtcgtgcag agccagatgt agccgcgctg gcggaactgg ccgcgctgca gctgctccca
     8821 cgcctcaatg acggcttagt gatcacccag ggatttatcg gtagcgaaaa taaaggtcgt
     8881 acaacgacgc ttggccgtgg aggcagcgat tatacggcag ccttgctggc ggaggcttta
     8941 cacgcatctc gtgttgatat ctggaccgac gtcccgggca tctacaccac cgatccacgc
     9001 gtagtttccg cagcaaaacg cattgatgaa atcgcgtttg ccgaagcggc agagatggca
     9061 acttttggtg caaaagtact gcatccggca acgttgctac ccgcagtacg cagcgatatc
     9121 ccggtctttg tcggctccag caaagaccca cgcgcaggtg gtacgctggt gtgcaataaa
     9181 actgaaaatc ctccgctgtt ccgcgcgctg gcgcttcgtc gcaatcagac tctgctcact
     9241 ttgcacagcc tgaatatgct gcattctcgc ggcttcctcg cggaagtttt cggcatcctc
     9301 gcgcggcata atatttcggt agacttaatc accacgtcag aagtgagcgt ggcattaacc
     9361 cttgatacca ccggttcaac ctccactggc gatacgttgc tgacgcaatc tctgctgatg
     9421 gagctttccg cactgtgccg ggtggaagta gaagaaggtc tggcgctggt cgcgttgatt
     9481 ggcaatgacc tgtcaaaagc ctgcggcgtt ggcaaagagg tattcggcgt actggaaccg
     9541 ttcaacattc gcatgatttg ttacggcgca tccagccata acctgtgctt cctggtgccc
     9601 ggcgaagatg ccgagcaggt ggtgcaaaaa ctgcatagta atttgtttga gtaaatactg
     9661 tatggcctgg aagctatatt tcgggccgta ttgattttct tgtcactatg cttatcaata
     9721 aacgagcctg tactctgtta accaacgtct ttatcgagaa taattgcctt taattttttt
     9781 atctgcatct ctaattaatt atcgaaagag ataaatagtt aagagaaggc aaaatgaata
     9841 ttatcagttc tgctcgcaaa cgaattcccg tacactgaac tctctggctc actgagggca
     9901 ccatcatggc actcccccgt attacccaaa aagagatgac tgaacgcgag cagcgtgaac
     9961 ttaaaacact gctggatcgg gcgcggattg cgcatggtcg cgtactgacc aactccgaaa
    10021 ccaacagcat taagaaagag tacatcgata aattaatggt cgagcgtgag gctgaagcga
    10081 aaaaagcccg ccaattgaag aaaaagcagg cttataaacc ggatcctgaa gcgtcattta
    10141 gctggtcagc aaatacgtcg acgcgcggca ggcgctaatg aacaatcaac gcctgagatt
    10201 ttcactcgtc tgtgtggaca caatcttccc ctcaccctaa ccctctcccc gaaggggcga
    10261 ggggactgtc cgagctcttt ttggacgttt tcatcagtct gaggcgttaa tcagcgtccc
    10321 ttctttttac gccccggcga ggtaaaacgc ttaccgttgg acgccgggcg accgcctttt
    10381 tccgccgttt tttccatctt aacgactgga cgtttgatgc ccgctgtttt cggtttggcc
    10441 ttcgctttag gttttgcctc ggaagaggaa ttttcgatga gcttaaagag gtcgattaac
    10501 tcatcgtcgg ttaaatcgcg ccactccccc agcggaatgc cgcttaagct gacgttcata
    10561 atgcgcgtac gttccagctt tttcacttca tagccgaaat gctcgcacat gcgccggatc
    10621 tgacggttca gcccctgcac cagggtaatg cggaagacaa acggcgcttc ttttttgact
    10681 ttgcactttt tcgtcaccgt cccgaggatc ggcacccccg cccccatacc acgaataaat
    10741 tcatcggtaa tcggtttatc gaccgtcacc agatactctt tctcatgatc gttacccgca
    10801 cggaggatct tattcaccag atcgccgtga ttggtgagga aaatcagccc ctgggagtct
    10861 ttatccaggc ggccaatcgg gaacacgcgt ttgctgtggt taacgaaatc gacaatgtta
    10921 tcgcgctcgc catcttcggt ggtgctgaca ataccgacgg gcttgttcag ggcgataagt
    10981 accaaatctt cggcttcccg aggctcaatc aactgaccgt ttactttcac aatgtcgccg
    11041 ggtttcacct gatcgccaat ggtggctcgc ttgccattaa ggaacacatt gccttgctcg
    11101 atatagcgat ccgcttcgcg gcgtgagcaa attccgcttt cgctgatgta tttatttaaa
    11161 cggactgatg agtcgggcag cataaattct cctgtaaaac gcggaatata ccgtacctct
    11221 tagcggggaa aaacagggtt atgcggcaac gtcgaaatta aatgtgatct gccacgcctt
    11281 ttatcacaaa agtgtctccg gaagtacgat gcaaatttgc ctggcaaaat aaggataatc
    11341 aacatattac gaatcgctgc acacctgtgc tgatgactac tacgcagaga aacaaatgtg
    11401 caagagaaag cgctatatct ccccatgcaa agagtgaaaa atcgctttga aaggccctca
    11461 tgatggggtt atatcagatc aagcggtgag aaagcgtatt tgcacaaatg tgcagaacca
    11521 ggaggcggca atggaaaaca gtgacgatat ccgtttgatt gtgaagattg cccaactcta
    11581 ttacgaacag gatatgacgc aggcgcaaat cgcgcgcgaa ctgggtattt accgcaccac
    11641 catcagccgc ttgcttaaac gaggccgcga tcagggaatt gtcaccatcg ccatcaacta
    11701 tgactacaac gaaaatctct ggctggagca gcaactgaag caaaagtttg gcctgaaaga
    11761 cgttgtggtg gtgtcgggaa atgatgagga tgaagagact caactggcga tgatggggtt
    11821 acacggcgcg caactgctgg atcgcttgct ggagcctggc gatattgtcg gtttttcctg
    11881 gggtcgcgcg gtgagcgcac tggttgaaaa cttgccgcag gcggggcaat cgcggcagtt
    11941 aatctgcgta ccaattattg gcggaccgtc cggtaaactc gaaagccgct atcatgtaaa
    12001 cacattaacc tacagcgcgg cagcgaagct gaaaggggaa tcgcatctcg cggattttcc
    12061 ggctctgctg gataacccat taattcgtaa tgggatcatg cagtctcagc actttaaaac
    12121 catctctgcc tactgggata atctggatgt cgccctggtg ggaattggct caccggccat
    12181 tcgcgacggc gctaactggc atgcgtttta tggtggtgaa gagagtgacg acctgaatgc
    12241 ccgccaggtt gctggcgata tttgctcgcg cttttttgat attcacggcg caatggttga
    12301 aacgaatatg agcgaaaaaa cactctctat cgaaatgaat aaattaaagc aggcacgata
    12361 ttccattggc attgccatga gtgaagaaaa atacagcgga attgttggtg cactgcgtgg
    12421 aaaatatatt aattgtctgg taacgaatag cagcacagct gaactattac tgaaataaaa
    12481 atcttcccga tgtttagcgt aataaaaatt acggcggggc cctattatct aaaatcagga
    12541 gtctgttatg caaacgtggt taaatttgca ggataaaatc attattgtca ccggcggcgc
    12601 atccggtatt ggtctggcga ttgtagagga attattagca caaggcgcaa acgtacagat
    12661 ggtagatatt cacggtggcg atggtcaata tgaaggtcat aaaggctatc agttttggcc
    12721 gaccgatatt tccagcgcca aagaggtaaa tcatacggta gcggaaatta tccagcgttt
    12781 tggtcgcatc gacggtctgg tcaataacgc cggggtcaat ttcccgcgtc tgctggtcga
    12841 tgagaaagcg cctgccgggc agtatgaact caacgaagct gcattcgaaa aaatggtcaa
    12901 tatcaaccag aaaggcgttt ttctgatgtc gcaggcggtg gcgcgacaga tggtcaaaca
    12961 acatgatggc gtgattgtga atgtttcctc agaaagtgga ctggaaggct cagaaggcca
    13021 aagctgttac gccgctacca aagccgcgct taatagcttc acgcgatcct ggtcgaaaga
    13081 attgggtaaa cacggtatcc gtgtggtcgg tatcgcgccg gggattctgg aaaaaacagg
    13141 actgcgcacg ccggaatatg aagaagcgct ggtgtggacg cgcaatatca ccgtcgagca
    13201 gctgcgtgaa ggctatacca aaaacgccat tcctattggg cgcgccggaa gattagcaga
    13261 agtcgctgat tttgtttgtt atctgctgtc tgaacgcgcc agctatatca ccggagtaac
    13321 cactaacatt gcgggcggca aaacgcgcgg ctaaggaggc tttatggtca atgccatttt
    13381 ttgcgcccac ggcaaattag cttgcgccat gctggaatcg gttcagatgg tgtacggcga
    13441 cgccagggtc gaggcagttg aatttgtgcc cggcgagaac gccggagaca tcgtagcaaa
    13501 gctggaaaag ttagtaagca ttcacaatca agatgagtgg ctgattgccg tggatttaca
    13561 gtgcggcagc ccgtggaatg cggcagcgat gcttgcgatg cgcaatcctc gtctgcgggt
    13621 aatcagcggc ctttctctgc cgctggcgct cgaactggtt gataaccagg acagcatgaa
    13681 tgttgatgaa ctgtgtgaac acctgacgca aatcgcaaag caaacctgcg ttgtctggaa
    13741 acaactggca acggcagagg aggatttctg atgaacatta cgctcgcccg cattgatgac
    13801 cgcctgatcc acggtcaggt cactaccgtc tggtcgaaag tggctaacgc ccagcgcatt
    13861 attatctgca atgacgaagt ttataacgat gaagttcgcc ggacattatt gcgtcaggct
    13921 gcgccaccgg gaatgaaggt taacgtggtc aatattgaaa aagccgtcgc tgtttatcac
    13981 aacccgcaat atcaggacga aaccgttttt tatcttttca ctcgcccaca ggatgcctta
    14041 gcgatggttc gccaaggggt aaaaatagac accctaaata ttggcggcat ggcctggcgg
    14101 cccggtaaaa aacagttaac caaagcggtt tcattagatg atgatgatat taacgcattt
    14161 catgagttaa ataatcttgg cgtcatactg gatttacgcg tcgtagcgtc agatccctca
    14221 atcaatatta tcgacaaaat aaacgaacag ttaatcgcaa attaaataat agcgcttgtg
    14281 tacatatgct ttaacaggca gggatgacga cacttaaaag gtgaaaaatc atggaaataa
    14341 gtaccctaca aatcattgct atatttcttt tttcctgtat tgccggaatg ggcagcgtgc
    14401 tggatgaatt tcagactcat cgcccgttaa ttgcctgtac ggtgattggt ttaattctcg
    14461 gtgatttaaa aaccggaata atactcggtg gtacgctgga attgatagct ctcggctgga
    14521 tgaacgtcgg cgcggcgcaa tctccggatt ctgcactcgc cagcataatc tccgccattc
    14581 tggttatcgt tggtcagcaa agcatcgcca ccggaatcgc catcgcgttg cctgtggctg
    14641 cggcaggcca ggtgctgact gtgtttgccc gtaccatcac cgtagtgttc cagcacgcgg
    14701 cggataaagc agcggaagaa gcacggtttc gcactctcga tattctgcat gtctccgcgt
    14761 ttggcgtgca ggcgctgcgc gttgctattc cggcactgat tgtctcactg ttcgtcagcg
    14821 ccgatatggt gagcaatatg ctgagcgcga taccggaatt cgtgacgcgc ggtctgcaaa
    14881 ttgctggcgg ttttatcgtg gtggtcggtt acgccatggt gctacgtatg atgggcgtga
    14941 aatatttgat gcctttcttt ttcctcggtt tcctcgcagg tggctacctc gatctcagtc
    15001 tgctggcgtt cggtggcgtc ggcgtgatca tggccctggt ctacatccag ctaaatccac
    15061 agtggcgtaa agctgaacct caactccagg ccaccgcctc caccgccctt gaccaacttg
    15121 acgattaacg gagccatcat ggaacagaga aaaattacac gcagcgatct ggtgagcatg
    15181 tttctgcgct ccaacctgca acaggcgtcc tttaactttg aacgtattca cgggctgggt
    15241 ttttgctacg acatgatccc cgccatcaaa cgactttacc cattaaaaga ggatcaggtt
    15301 gcggcgctca ggcgacacct ggtgttcttc aataccacgc cagccgtatg tggcccggtc
    15361 atcggcgtca ctgccgccat ggaagaggcg cgggccaacg gcgcggaaat tgatgacggt
    15421 accattaacg gcatcaaagt cggtctgatg ggaccattgg caggagttgg cgatccactg
    15481 gtctggggaa cgctgcgccc gattaccacc gcgctcggcg catctctggc actttcgggc
    15541 aacattctcg gcccgctgct gttcttcttt attttcaatg cggtgcgtct ggcgatgaag
    15601 tggtatggcc tacagctcgg ctttcgcaaa ggggtgaata tcgtcagcga tatgggcggg
    15661 aatgtgctgc aaaaactcac cgaaggcgcg tcgattctcg gactgtttgt gatgggcgtg
    15721 ctggtcacca aatggacgtc aatcaacgta ccgttggtgg tttcacaaac gcatgccgcc
    15781 gatggctcca ccgtcaccat gaccgtgcag aacattctcg accaactttg ccctggtttg
    15841 ctggcgctcg gtctgacgct gcttatggtt cgtctgctca acaaaaaaat taacccggta
    15901 tggctgattt tcgccctgtt tggcttaggg attatcggta atgcgctggg cttcctgtcc
    15961 agattcttcg ccccggcatg actgccgggg ccatcgctca acatgaggtg gtttatgaaa
    16021 acaacagctc tgcgtcttta tggtaaacgt gatttacgcc tggaaacctt tgaccttcct
    16081 gaaatgcagg aggatgaaat cctcgcgacg gtggtcactg acagcctgtg cctctcttcc
    16141 tggaaagagg ccaatctggg tgaaaaccat aaaaaagtac ccgacgatgt ggcgaccaac
    16201 cccatcatca tcggccacga gttttgcggc gatattctgg ccgtgggtaa aaagtggcag
    16261 cacaaattcc agccgggtca gcgttatgtg attcaggcca acctgcaact ccccgaccgc
    16321 ccggactgcc ccggctactc cttcccgtgg gtgggcggcg aagccacgca tgtagttatt
    16381 cccaacgagg tcatggaaca agattgcctg ctggcatacg acggcgaaac ctattttgaa
    16441 ggctcactgg ttgaaccgct ttcctgcgtg attggcgcgt tcaacgccaa ctatcatctt
    16501 caggaaggta gttataacca cacgatgggg attcgcccgc aagggcgcat gctgatcctc
    16561 ggcggcaccg gaccaatggg actgttggcg attgattatg cgctacatgg acccgttaac
    16621 ccgtcgcagc tcgtcattac cgataccgac aacgataaat tgagttatgc gcgcaagcac
    16681 tatccatcag aaccgcaaac actgattcat tatctcaatg ccgccgatgc agcatttgat
    16741 acgctaatgg cgctgagtgg cggtcacggc ttcgatgata ttttcgtctt tgtgcctaat
    16801 gaaggactgg tgactctcgc ctcttccttg ctggcgacag atggttgcct gaatttcttc
    16861 gccggaccgc aggataaaca tttcagcgcg ccaattaatt tctacgatgt gcattatgca
    16921 tttacccact acgtgggcac gtcaggcggc aataccgacg acatgcgcgc ggcggtcaaa
    16981 ctgattgaag agaaaaaagt gcaggccgca aaagtggtaa cacatattct tgggctgaat
    17041 gccgcgggcg aaaccacgct tgaattgcct gccgtcggcg gcggcaaaaa gctggtgtat
    17101 accgggaaat acctgccgct gacgtcactc acgcagattc aggatcaagc actggcggcg
    17161 attctggcgc gtcatcaggg gatctggtcc ggtgaggcgg agcaatatct gctcactcat
    17221 gcagaggcaa tttcccatga ttaatcgcgc tacttaactc tgcatgtcgc tggctggtcg
    17281 ccgcggcaac ttcgcgacct gatgtgcggc tgattgctga agcggcccaa tgtgcacgag
    17341 aaggataaaa aaacatcagc gccttaaggg gcgctcaaat tggtggcaaa gtacacattg
    17401 tttatgccgg atgcggaata aagccttatt cggcctacat aatctcgaaa attcaatata
    17461 ttgcagttat ctggtaggcc tggtaagcgt agcgcatcag gcaatgctgt gtttgtcatc
    17521 agtctcagct cccggtgcaa tacgtgacat cgtgagccat gtcagtaagt ggttaaattc
    17581 gcagtggtag catgccttcc gtgatttctt actaaccgga gaagtaatgg aactgctttt
    17641 attgagtaac tcgacgctgc cgggtaaagc ctggctggaa catgcactgc cgctaattgc
    17701 tgaacagttg cagggtcgcc gctcagcggt gtttatccct ttcgctggcg taacgcagac
    17761 ctgggatgat tacacagcga aaacggctgc ggttctcgct ccgctgggtg tttctgtcac
    17821 cggtattcat agcgttgtcg atcccgttgc cgcgattgaa aatgctgaga tcgtgattgt
    17881 cggcggcggg aatactttcc agttgctgaa acagtgccgc gagcgcgggc tgctggcacc
    17941 aattactgac gtggttaaac gtggtgcgct gtatattggc tggagcgcag gcgctaacct
    18001 tgcttgccca accattcgta ccaccaacga tatgccgatt gtcgatccgc aaggtttcga
    18061 tgcgctaaat ctgttcccgt tgcaaatcaa cccgcacttc accaacgcgc tgccggaagg
    18121 ccataaaggt gaaacccgtg agcagcgtat tcgcgaactg ctggtcgtcg cgccagaact
    18181 gacgattatt ggtctaccgg aaggtaactg gatcacagtg agtaaaggtc acgctacgct
    18241 gggtggcccg aacaccacct atgtgtttaa ggccggtgaa gaagcggttc cgctggaagc
    18301 tggtcaccgt ttttaagtga attgccggat gcatgatccg gcatcttgtt catagtgcct
    18361 gatgcgacgc ttgacgcgtc ttatcaggcc tacaggattc acaatattaa tactcgtccc
    18421 gtccttcatc ttcatccgac tgttccagca cactgtaagc caccgaacaa aacagcgagt
    18481 tcaggcgctg catatctccc agtaagccta aatgtagcga actggtttca atgctctgca
    18541 cgttttgctg atgcaggcga tcgacgtggg cgtgggaata gcggcgatta agaatgcgaa
    18601 agcgatgctt actacggcgc aaacgacgag cgctggtgac atcgccagag aagaacaccg
    18661 acattgccag ctttaaatta ctgagcaatt gctcatagag cgcatccagt tccttcaacc
    18721 catcaagcga aaatgcccgc cgtgctgcca gtgatttgtc agcaatttcg ctgcccatgc
    18781 gctcgacgat atcggaggcc tgttcaaggt tgagcgacat ttcaataatc tccgcccagc
    18841 ggcgcgactc ttcctccgcc agctcttctt ttggcatccg cgccagatac agcttaatgg
    18901 cggtgtagag aacgttgata tcatctgcca gcttacgcag ctctttctcc tgccgtggct
    18961 caccgtgcat cactttattc aacccttcca tcatctgttc catggcgtcg ccaatgcgca
    19021 gggtttcgcg cgcggcgttc gccagagcaa gcgtgggcgt atccagcgcg ctgacatcca
    19081 gatgtttagg ccgtagctgg gtatccagtt ccggttcatc gcgaataatc gttttgcaaa
    19141 accgtgccat cgggtcaaca aatggcagca tgaccaggca acgtacaagg ttgtagaaga
    19201 cgtggaaata gatcaccagt tccgcttttg gcaatgacag cttccccatt gtctctgcca
    19261 gcaaatggac aaacggcagg ataatcaggc tacccaccag cttaaacagc agactaccca
    19321 gcgcgacacg gcgggctgcg gcattggcgg cactgttgtt gagcatcgcc agcaggccgg
    19381 aaccgaggtt agcaccaatc accagacaga gcgccacggg gaaggagata atgcctgcgg
    19441 cggtcagagc cgcggtcagc agtacagcag caaggctgga gtagctgata atggcgaaca
    19501 tcgcgccaat cagcgcatcc agcagaatat cgccggtcag cgaggcaaag atcacctgaa
    19561 cgccgtttgc ctgggtgatc ggcgttacgg cctgcacaat caactccagc gccagcaaaa
    19621 tcagcccaag accaataccg acgcggccca gttgcccggc gcgtgactgt ttgcgtccga
    19681 ggaaaaaaat cacgccgata aaaataagta acggtgacag ccaggataag tcgaaggtga
    19741 gaatacgcgc cattagcgcc gtcccgacat ctgcccccag cacaatgacc agagccggtg
    19801 cgagggctac cagatcctga gcgacgaacg aggtcaccag catggtggtg gcattactgc
    19861 tctgtaccag tgcggtaacg ccgatccccg cgcaaaaggc gagcggcttt ttttcgacgc
    19921 tccggctaag gacagtacgc aaacgcgcgc cgaagacgcg cattacgccg gttcgaacaa
    19981 tatgagtccc ccagaccagc agggcgacgg cagaaagcag gtgaagcagc gttaacacga
    20041 gttcaggttc tccttatcgt tatatgttcc tgaagcaatt gaatgaccaa aggaccggaa
    20101 acacgctgac tggcatcttt actgtgcctt ttgacattcg tttttccggc taagattatt
    20161 ccagcctgat tccagtataa gtgtttcata ttaataaaga gacagggcac tcattgagcg
    20221 ccctgtttgt tgtaaggaaa agtgacagat ttgtgaatca gtccgcgtca taccccagat
    20281 tcggtgccag ccagcgctca acatctgaga cgctcatacc tttacggcgg gcatagtctt
    20341 caacctgatc gcgctgaatt tgcgccacgg cgtagtactt gctgtccggg tggctgaaat
    20401 accaacccga aaccgatgca ccgggccaca tggcgaaaga ttctgtgagt ttcatgccgg
    20461 tatgtttttc cacttccagc agctcccaga tggtggcttt ttccgtatgt tccgggcagg
    20521 ccgggtagcc cggtgccgga cggatgccct ggtagttttc gcggatcagt tcttcgttgc
    20581 tgaggttctc gttcggcgca tagccccagt agactttacg cacacgctca tggagatact
    20641 ccgcaaaggc ttcggctaaa cggtcggcaa gcgctttcac catgattttg ttgtaatcat
    20701 cgtgctgcgc ttcaaaggca tcagccagtg cgtcctcttc cagcccgcca gtcacggcaa
    20761 atgcgccgat gtaatctgct ttaccagaaa gcttcggcgc aacaaagtca gcgagacagt
    20821 agttagcgaa tcccgttttt tcggtctgtt gacgcagatg gtggctgaca ttgatcacat
    20881 gggtgcgcgt ttcgtcacgg tagatttcaa tgtcatcgcc cacacggttt gccgggaaca
    20941 ggcccaccac gccacgcgga ttcagcgttt tctcggcgct taatttatcc agcatgtcgt
    21001 tggcgtcttt aaacagccgc tgcgcctcaa cgcccaccac ttcatcttcc agaatgcgcg
    21061 gatacttccc ggccagcgac caggtcataa agaacggtgt ccagtcgatg caattacgca
    21121 gagtttcgat gctggcttca acttcctgca cgccgagacg gtgcgccacc ggcggcgtgt
    21181 aagcctgcca gtcaaaagcg aagtcgttat cgcgcgccgc ttccagcgtg accggtggtg
    21241 tgcgcggttt cttgcgcccg tgctgaatac gtacggtttc gtactccttg cgggtacgag
    21301 cgacaaaatc atcgcgctga gtatcggaaa gcagcgccgc caccacacca acggtgcgcg
    21361 aggcattctg cacatacacc gtcgggccgc tgtagttctg ctcaattttc accgccgtgt
    21421 gcgcttttga ggtggtcgcg ccaccgatca gtaacggaat ggtgaagccc tgacgctcca
    21481 tctctttcgc cacgttaacc atctcgtcca gcgacggcgt gataagcccc gaaaggccaa
    21541 tcaaatcagc attcacttct ttagcagtac ggagaatttt ttccgcaggc accatcacgc
    21601 cgagatcgac aatttcgtag ttgttacatt gcagcaccac gccaacgata tttttaccga
    21661 tatcgtggac gtcgcccttc acggtggcga tcaccatctt gccgttggtt ttgccctgct
    21721 ctttgctggc ttcaataaac ggttcgagat acgccaccgc ctgtttcatg acgcgcgccg
    21781 atttgaccac ctgtggcagg aacattttgc cttcgccaaa cagatcgccg accacgttca
    21841 tgccgtccat caacgggcct tcaatcactt caatcgggcg cgtagcctgc tggcgggctt
    21901 cttcggtatc ctgctcgata aactcggtaa tgcctttgac cagcgagtat tccagacgtt
    21961 tattcacttc ccacgagcgc cactccgcct gctgggcgtt atcggtgtcg tcggttttgc
    22021 tgccgcgata tttctcggca agctccagta aacgctcagt gccatcgtca cgacgattaa
    22081 gaatcacatc ttccaccgcg tcgcgcagtt cagcgggtag gtcgtcgtaa atcgccagtt
    22141 gccccgcgtt gacgatcccc atatccatgc cattgcgaat agcgtagtag aggaacactg
    22201 cgtgaatggc ttcgcgcacc ggatcgttgc cacggaatga gaaagaaacg ttagatacgc
    22261 cgccggaaat cagcgcgtgc ggcagttcgc gtttgatgtc ttcacacgcg ccgataaagt
    22321 cctgcgcgta gttgttgtgc tcttcaatac cggtggcgac cgcgaagatg ttcgggtcga
    22381 agatgatatc ttctggcggg aagccaacct cttcggtgag gattttgtac gcccgacggc
    22441 aaatctcgat tttccgtgcg cgagtatcgg cctgtccctg ttcatcaaag gccatcacca
    22501 ccactgccgc accgtagcga cgcaacaatt tcgcgtgatg gataaaggcg tcgacgccct
    22561 ctttcatcga gattgagtta acaatgcctt tgccctgaat acacttcagc cctttttcga
    22621 taacgtccca ttttgaggag tcgatcataa tcggcacgcg agcgatatcc ggttcaccgg
    22681 caatcagatt gagaaaacgc accatcgccg cttcggcatc gagcatccct tcatccatgt
    22741 tgatatcgat aatctgcgcg ccgttttcca cctgctgacg cgccacatcc tgcgcctcgc
    22801 tgtatttctc ttctttgatc aggcgcttga acttagcaga gccggtgacg ttggtgcgtt
    22861 cacccacgtt cacaaacagg ctatcgtcgc caatgttcag cggctccagg ccagacaaac
    22921 ggcaggctac gggaatttcc ggcagtttgc gcggcgctaa tccttctact gcacgactca
    22981 tcgctgcaat atgttgcggc gtggtcccgc agcaaccacc gacgatattg agaaagcccg
    23041 cttgcgccca ttcacgtatc tgttttgcca tcgtgtcggc gtcgagatcg tattcaccaa
    23101 aggcgttagg cagcccggcg ttcgggtggg cggtgacgta gcattccgca atccgtgata
    23161 gttcctgcac gtactggcgc agttcatcgg gccccagcgc acagttcagg ccaaaggtta
    23221 gcgcttcggc gtggcgcaat gagttgtaaa atgcttcggt ggtctgcccg gagagcgtgc
    23281 gcccggaggc gtcggtgatg gtgccggaga tcataatcgg cagctcaacg cccagcgctt
    23341 caaactccgt tttcaccgca aaaaccgccg ctttggcgtt aagggtgtcg aaaacggttt
    23401 caatcaggat cagatccgca ccaccttcca ccagcgcttt ggtggattcg caataggccg
    23461 ccaccagctg gtcaaaagtg atgttgcgga atgccggatc gttgacgtcc ggagaaatag
    23521 acgccgtgcg gttggttggg ccgagaacac cggcaacgta gcgcggtttc tccggcgtgc
    23581 gcgcggtcca ctcgtcagca caggcgcgcg ccagtttcgc cgccgcaaag ttgatttccg
    23641 ccgacaggga ttccatctgg taatccgcca tcgcaatggt cgtggagttg aaggtgttgg
    23701 tttcgatgat atccgcgccc gcttcaaagt aggcgttgtg gatagcggcg atcacttccg
    23761 gtttgctgag caccagcagg tcgttgttgc ctttgagatc gcatggccag tcggcaaagc
    23821 gttcaccacg aaaatcggct tcgttcagtc gataactctg gatcatggtg cccataccgc
    23881 cgtccagcac cagaatacgt tcatttaact gcgcacgcag ttgttccact ttgctgctca
    23941 cacttgctcc cgacacgctc aacccagatt taataaaaat tcaacaaacc atactggcat
    24001 aaacgcatct gtggtaaaag cgaccaccac gcaacatgag atttgttcaa cattaactca
    24061 tcggatcagt tcagcaacta ttgcattagc taacaataaa aatgaaaatg attcccacga
    24121 tgcagaaaaa ggagactgtc atggtcgcac ccattcccgc gaaacgcggc agaaaacccg
    24181 ccgttgccac cgcaccagcg actggacagg ttcagtcttt aacgcgtggc ctgaaattac
    24241 tggagtggat tgccgaatcc aatggcagtg tggcactcac ggaactggcg caacaagccg
    24301 ggttacccaa ttccacgacc caccgcctgc taaccacaat gcaacagcag ggtttcgtgc
    24361 gtcaggttgg cgaactggga cactgggcaa tcggcgcaca tgcctttatg gtcggcagca
    24421 gctttctcca gagtcgtaat ttgttagcaa ttgttcaccc tatcctgcgc aatctaatgg
    24481 aagagtctgg cgaaacggtc aatatggagg tgcttgatca aagcgatcac gaagcgatta
    24541 ttatcgacca ggtacagtgt acgcatctga tgcgaatgtc cgcgcctatc ggcggtaaat
    24601 tgccgatgca cgcttccggt gcaggtaaag cctttttagc ccaactgagc gaagaacagg
    24661 tgacgaagct gctgcaccgc aaagggttac atgcctatac ccacgcaacg ctggtgtctc
    24721 ctgtgcattt aaaagaagat ctcgcccaaa cgcgcaaacg gggttattca tttgacgatg
    24781 aggaacatgc gctggggcta cgttgccttg cagcgtgtat tttcgatgag caccgtgaac
    24841 cgtttgccgc aatttctatt tccggaccga tttcacgtat taccgatgac cgcgtgaccg
    24901 agtttggcgc aatggtgatt aaagcggcga aggaagtgac actggcgtac ggtggaatgc
    24961 gctgactttt tctggcgggc agaggcaata ttctgcccat cat
//
LOCUS       DAJVSY010000048        24876 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.048, whole genome shotgun sequence.
ACCESSION   DAJVSY010000048 DAJVSY010000000
VERSION     DAJVSY010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24876
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.048"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..338)
                     /locus_tag="OQQ19_001763"
     CDS             complement(<1..338)
                     /locus_tag="OQQ19_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308538.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803422.1"
                     /translation="MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYV
                     AFFATLAVMLQSETLSGSVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGE
                     WYNTRFVPAAL"
     gene            complement(454..1005)
                     /gene="maa"
                     /locus_tag="OQQ19_001764"
     CDS             complement(454..1005)
                     /gene="maa"
                     /locus_tag="OQQ19_001764"
                     /EC_number="2.3.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose O-acetyltransferase"
                     /protein_id="HCS1803423.1"
                     /translation="MSTEKEKMIAGELYRSADETLSRDRLRARQLIHRYNHSLAEEHT
                     LRQQILADLFGQVTEAYIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCML
                     APGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGA
                     VVTKGVPDNVVVGGNPARIIKKL"
     gene            complement(1177..1395)
                     /gene="hha"
                     /locus_tag="OQQ19_001765"
     CDS             complement(1177..1395)
                     /gene="hha"
                     /locus_tag="OQQ19_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin expression modulator Hha"
                     /protein_id="HCS1803424.1"
                     /translation="MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFY
                     SAADHRLAELTMNKLYDKIPSSVWKFIR"
     gene            complement(1421..1795)
                     /gene="tomB"
                     /locus_tag="OQQ19_001766"
     CDS             complement(1421..1795)
                     /gene="tomB"
                     /locus_tag="OQQ19_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001741190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hha toxicity modulator TomB"
                     /protein_id="HCS1803425.1"
                     /translation="MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNYGWVNDPTSAI
                     NLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYLDDTFMLFSSYGINMQDLQKWRK
                     SGNRLFRCFVNATKENPASLSC"
     gene            complement(2341..5490)
                     /locus_tag="OQQ19_001767"
     CDS             complement(2341..5490)
                     /locus_tag="OQQ19_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HCS1803426.1"
                     /translation="MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVT
                     ISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADI
                     AQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAA
                     NMKDAISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQ
                     LGGTPPVKGQQLNASIIAQTRLTSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYD
                     IIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVK
                     ISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLS
                     AVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEG
                     KKGFFGWFNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPD
                     EDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNT
                     GIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDF
                     ELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNGLEDTPQFKIDIDQEKAQALG
                     VSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAADGQM
                     VPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASKLPTGVG
                     YDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALL
                     AATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRL
                     RPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVR
                     RRFSRKNEDIEHSHTVDHH"
     gene            complement(5513..6706)
                     /gene="acrA"
                     /locus_tag="OQQ19_001768"
     CDS             complement(5513..6706)
                     /gene="acrA"
                     /locus_tag="OQQ19_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit AcrA"
                     /protein_id="HCS1803427.1"
                     /translation="MNKNRGFTPLAVVLMLSGSLALTGCDNKQAQQGGQQMPAVGVVT
                     VKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQ
                     ATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAA
                     KAAVETARINLAYTKVTAPISGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQ
                     SSNDFLRLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITL
                     RAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTRTPRGDATVLVVGADDKVET
                     RPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQEVTADNNQQAASGAQP
                     EQSKS"
     gene            6848..7495
                     /gene="acrR"
                     /locus_tag="OQQ19_001769"
     CDS             6848..7495
                     /gene="acrR"
                     /locus_tag="OQQ19_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter transcriptional
                     repressor AcrR"
                     /protein_id="HCS1803428.1"
                     /translation="MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVT
                     RGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVT
                     EERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMT
                     RRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE"
     gene            7623..10985
                     /gene="mscK"
                     /locus_tag="OQQ19_001770"
     CDS             7623..10985
                     /gene="mscK"
                     /locus_tag="OQQ19_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel MscK"
                     /protein_id="HCS1803429.1"
                     /translation="MTMFQYYKRSRHFVFSAFIAFVFVLLCQNTAFARASSNGDLPTK
                     ADLQAQLDSLNKQKDLSAQDKLELQDLTDTLATLDKIDRIKEETVQLRQKVAEAPEKM
                     RQATAALTALSDVDNDEETRKILSTLSLRQLETRVAQALDDLQNAQNDLASYNSQLVS
                     LQTQPERVQNAMYNASQQLQQIRSRLDGTDVGETALRPSQKVLMQAQQALLNAEIDQQ
                     RKSLEGNTVLQDTLQKQRDYVTANSARLEHQLQLLQEAVNSKRLTLTEKTAQEAVSPD
                     EAARIQANPLVKQELEINQQLSQRLITATENGNQLMQQNIKVKNWLERALQSERNIKE
                     QIAVLKGSLLLSRILYQQQQTLPSADELENMTNRIADLRLEQFEVNQQRDALFQSDAF
                     VNKLEEGHTNEVNSEVHDALLQVVDMRRELLDQLNKQLGNQLMMAINLQINQQQLMSV
                     SKNLKSILTQQIFWVNSNRPMDWDWIKAFPQSLKDEFKSMKITVNWEKAWPAVFIAFL
                     AGLPLLLIVGLIHWRLGWLKAYQQKLASAVGSLRNDSQLNTPKAILIDLIRALPVCLI
                     ILAVGLILLTMQLNISELLWSFSKKLAIFWLVFGLCWKVLEKNGVAVRHFGMPEQQTS
                     HWRRQIVRISLALLPIHFWSVVAELSPLHLMDDVLGQAMIFFNLLLIAFLVWPMCRES
                     WRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSGRWIETVYLVIIWNLLYQ
                     TVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIALEQVNQQTLRITMLLM
                     FALFGVMFWAIWSDLITVFSYIDSITLWHYNGTEAGAAVVKNVTMGSLLFAIIASMVA
                     WALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFGSLGVSWDKLQW
                     LAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTVTIGSFSGTVSKIRIRATTIT
                     DFDRKEVIIPNKAFVTERLINWSLTDTTTRLVIRLGVAYGSDLEKVRKVLLKAATEHP
                     RVMHEPMPEVFFTAFGASTLDHELRLYVRELRDRSRTVDELNRTIDQLCRENDINIAF
                     NQLEVHLHNEKGDEVTEVKRDYKGDDPTPAVG"
     gene            complement(11197..11358)
                     /gene="rsmS"
                     /locus_tag="OQQ19_001771"
     CDS             complement(11197..11358)
                     /gene="rsmS"
                     /locus_tag="OQQ19_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pleiotropic regulatory protein RsmS"
                     /protein_id="HCS1803430.1"
                     /translation="MSLENAPDDVKLAVDLIVLLEENQIPARTVLRALDIVKRDYEKK
                     LTRDDEAEK"
     gene            complement(11372..11899)
                     /gene="priC"
                     /locus_tag="OQQ19_001772"
     CDS             complement(11372..11899)
                     /gene="priC"
                     /locus_tag="OQQ19_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N''"
                     /protein_id="HCS1803431.1"
                     /translation="MKTALLLEKLEGQLATLRQRCAPVAQFATLSARFDRHLFQTRTT
                     TLQACLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAP
                     PKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCR
                     HALEKIENRLARLTR"
     gene            11969..12346
                     /locus_tag="OQQ19_001773"
     CDS             11969..12346
                     /locus_tag="OQQ19_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF454 family protein"
                     /protein_id="HCS1803432.1"
                     /translation="MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSP
                     RFHAWLLYRSWFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLL
                     VILACLLFYMWRIPVIDEKQEKH"
     gene            12499..13050
                     /gene="apt"
                     /locus_tag="OQQ19_001774"
     CDS             12499..13050
                     /gene="apt"
                     /locus_tag="OQQ19_001774"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HCS1803433.1"
                     /translation="MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALS
                     IDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDL
                     EYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFD
                     LGGEQRLEKQGITSYSLVPFPGH"
     gene            13179..15050
                     /gene="dnaX"
                     /locus_tag="OQQ19_001775"
     CDS             13179..15050
                     /gene="dnaX"
                     /locus_tag="OQQ19_001775"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HCS1803434.1"
                     /translation="MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFS
                     GTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVE
                     DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ
                     KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL
                     SLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGI
                     EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI
                     GRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQ
                     PQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVPSALEKAP
                     AKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAARVS
                     QLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSTLKGSTVEL
                     TIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI"
     misc_feature    14443..14507
                     /gene="dnaX"
                     /locus_tag="OQQ19_001775"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00382"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="DnaX frameshifting element; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00382"
     gene            15103..15432
                     /locus_tag="OQQ19_001776"
     CDS             15103..15432
                     /locus_tag="OQQ19_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001364632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HCS1803435.1"
                     /translation="MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKV
                     TINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLP
                     PGFKMPF"
     gene            15432..16037
                     /gene="recR"
                     /locus_tag="OQQ19_001777"
     CDS             15432..16037
                     /gene="recR"
                     /locus_tag="OQQ19_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HCS1803436.1"
                     /translation="MQTSPLLTQLMEALRCLSGVGPKSAQRMAFTLLQRDRSGGMRLA
                     QALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQENGQICVVESPADIYAIEQTGQFS
                     GRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
                     CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF"
     gene            16147..18021
                     /gene="htpG"
                     /locus_tag="OQQ19_001778"
     CDS             16147..18021
                     /gene="htpG"
                     /locus_tag="OQQ19_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003903109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HCS1803437.1"
                     /translation="MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAAD
                     KLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGT
                     KSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG
                     EYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDG
                     ETVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTS
                     LLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNV
                     SREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFAN
                     QEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELL
                     RKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKAL
                     TPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPEVKY
                     IFELNPDHVLVKRAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLVS
                     "
     gene            18202..18846
                     /gene="adk"
                     /locus_tag="OQQ19_001779"
     CDS             18202..18846
                     /gene="adk"
                     /locus_tag="OQQ19_001779"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007706188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HCS1803438.1"
                     /translation="MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSE
                     LGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIN
                     VDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQ
                     EETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG"
     gene            18978..19940
                     /gene="hemH"
                     /locus_tag="OQQ19_001780"
     CDS             18978..19940
                     /gene="hemH"
                     /locus_tag="OQQ19_001780"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HCS1803439.1"
                     /translation="MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTSRLL
                     WWPLLRGVILPLRSPRVAKLYASVWMEGGSPLMVYSRQQQQALAQRLPETPVALGMSY
                     GSPSLESAVDELLAEHVDHIVVLPLYPQFSCSTVGAVWDELARILARKRSIPGISFIR
                     DYADNHDYINALANSVRASFAKHGEPDLLLLSYHGIPQRYADEGDDYPQRCRTTTREL
                     ASALGMAPEKVMMTFQSRFGREPWLMPYTDETLKMLGEKGVGHIQVMCPGFAADCLET
                     LEEIAEQNREVFLGAGGKKYEYIPALNATPEYIEMMANLVAAYR"
     gene            complement(19937..20896)
                     /gene="aes"
                     /locus_tag="OQQ19_001781"
     CDS             complement(19937..20896)
                     /gene="aes"
                     /locus_tag="OQQ19_001781"
                     /EC_number="3.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl esterase"
                     /protein_id="HCS1803440.1"
                     /translation="MKPENKLPVLDLISAEMKTVVNTLQPDLPSWPATGTIAEQRQYY
                     TLERRFWNAGAPEMATRAYMVPTKYGQVETRLFCPQPDSPATLFYLHGGGFILGNLDT
                     HDRIMRLLASYSQCTVIGIDYPLSPEARFPQAIEEIVAACCYFHQQAEDYQINMSRIG
                     FAGDSAGAMLALASALWLRDKQIDCGKIVGVLLWYGLYGLRDSVTRRLLGGVWDGLTQ
                     QDLQMYEEAYLSNDADRESPYYCLFNNDLTREVPPCFIAGAEFDPLLDDSRLLYQTLA
                     AHQQPCEFKLYPGTLHAFLHYSRMMKTADEALRDGAQFFTAQL"
     gene            21048..22352
                     /gene="gsk"
                     /locus_tag="OQQ19_001782"
     CDS             21048..22352
                     /gene="gsk"
                     /locus_tag="OQQ19_001782"
                     /EC_number="2.7.1.73"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inosine/guanosine kinase"
                     /protein_id="HCS1803441.1"
                     /translation="MKFPGKRKSKHYFPVNARDPLLQQFQPENETSAAWVVGIDQTLV
                     DIEAKVDDEFIERYGLSAGHSLVIEDDVAEALYQELKQKNLITHQFAGGTIGNTMHNY
                     SVLADDRSVLLGVMCSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLIGESG
                     ERTFAISPGHMNQLRAESIPEDVIAGASALVLTSYLVRCKPGEPMPEATMKAIEYAKK
                     YNVPVVLTLGTKFVIAENPQWWQQFLKDHVSILAMNEDEAEALTGESDPLLASDKALD
                     WVDLVLCTAGPIGLYMAGFTEDEAKRKTQHPLLPGAIAEFNQYEFSRAMRHKDCQNPL
                     RVYSHIAPYMGGPEKIMNTNGAGDGALAALLHDITANSYHRSNVPNSSKHKFTWLTYS
                     SLAQVCKYANRVSYQVLNQHSPRLTRGLPEREDSLEESYWDR"
     gene            complement(22485..24161)
                     /locus_tag="OQQ19_001783"
     CDS             complement(22485..24161)
                     /locus_tag="OQQ19_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kef family K(+) transporter"
                     /protein_id="HCS1803442.1"
                     /translation="MHHATPLITTIVGGLVLAFILGMLANKLRISPLVGYLLAGVLAG
                     PFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKAIAIPGAIAQIAVATLL
                     GMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLV
                     MVLTLVLLPAVAGMMEQGDVGFATLAVDMGITIGKVIAFIAIMMLVGRRLVPWIMARS
                     AATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLP
                     LRDAFAVLFFVSVGMLFDPLILIQQPLAVLATLAIILFGKSLAAFFLVRLFGHSQRTA
                     LTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFALLEKYLA
                     KTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR
                     TRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPD
                     IEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLETPPAGEVVTG"
     gene            complement(24399..>24876)
                     /gene="fsr"
                     /locus_tag="OQQ19_001784"
     CDS             complement(24399..>24876)
                     /gene="fsr"
                     /locus_tag="OQQ19_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fosmidomycin MFS transporter"
                     /protein_id="HCS1803443.1"
                     /translation="YYTFYLMQKFGLSIQNAQLHLFAFLFAVAAGTVIGGPVGDKIGR
                     KYVIWGSILGVAPFTLILPYASLHWTGVLTVIIGFILASAFSAILVYAQELLPGRIGM
                     VSGLFFGFAFGMGGLGAAVLGLIADHTSIELVYKICAFLPLLGMLTIFLPDNRHKD"
BASE COUNT         6217 a         6481 c         6388 g         5790 t
ORIGIN      
        1 agcgcggcag gtacaaagcg cgtgttgtac cattcgccgt tatagcaaac gcggaaatcc
       61 agcacgtcga tatcttcata gcggtagcgt gggtagacat cgaaaaagaa gaaaccatta
      121 agcaggataa ataatacaac cagtagccag acagagcctg acagcgtttc ggactgcaac
      181 atcaccgcca gggtggcaaa aaaagcaacg tacataccga taaacagccc cggatgttta
      241 cggataaaac tgatactaaa gcggggtttg ttgtcgcgtt tttcgcgggt attcagagac
      301 tcaatcgttt cggtcagcag gcgttgtatt tcggtcatcg tttgccttcg tggtatctgc
      361 aactttccag ggaacaccct attttaacgt gggaatagta gaggggaagt aacagatcta
      421 ccacaatttt gcataacagt tgcgaaaaac cgattacaat tttttaatta ttctggctgg
      481 attaccgccc acgacaacgt tgtccgggac accttttgtg acaactgcac ctgaagctac
      541 cacgacgtta tcaccaatgg tcacaccagg gttaatgacc gcgcgtccgc caatccagac
      601 gttattaccg atggtgacgg gtttccccag ttcagcaccg ctattacgtg ctacagggtc
      661 gatgggatgt gttgccgtgt agatatgaac gcctggtgcc aacatacagt tatcaccgat
      721 gcgaataggg cagacatcaa gcatcacgca atcgaagttg gcgaaaaaat tattgccgag
      781 aaaaatgtta tagccataat cacagcgaaa cgttggctca atataagcct ctgtcacctg
      841 accgaataaa tcagcgagaa tttgctggcg taatgtgtgc tcttccgcca gggaatgatt
      901 gtatcggtga ataagctgac gagcgcgcag gcgatcgcga gataacgtct catctgccga
      961 gcgatacaac tcaccagcaa tcatcttttc tttttctgtg ctcattactg acctccggtt
     1021 gctgaaaatg cggcaacaca gtaagacgaa aagtcagtga acagaacgtt cccattacat
     1081 ctgtgtgata aagatcacat agggtatgtc ttcatggtga aaaagtataa aattcttaat
     1141 aaacagccgg ttatagctcc gaaagcgaat tatttattag cgaataaatt tccatactga
     1201 ggaagggatc ttgtcgtata gtttattcat ggtcaattcg gcgaggcggt gatctgcggc
     1261 tgagtaaaat accgccagtt cattatctga taattcgtat ttatttttct cgataacacg
     1321 ctccagcgtg tcaattgtct ggcaacgacg taaacgcatt aaataatcgg ttttcgttaa
     1381 aggtttttcg gacatacttc tacccatggt tgtaataatt ctaacaagat aaactcgcag
     1441 gattctcttt cgtcgcattg acaaaacaac ggaatagtcg attacctgac ttccgccatt
     1501 tctgaagatc ctgcatatta ataccataac tactgaacaa cataaaggtg tcatccagat
     1561 attcgtcgat ctgctcaatg agcttattgt cttcattata cttaattttg taattaagtg
     1621 cgaaggtcgc aatatgctca atcagttcat tcaactggag gttgatcgcc gaggttgggt
     1681 cgttaaccca gccataattg ctttcttcaa ggtttgcaag gcagtcatga tacagggttt
     1741 cacagagaaa cttaagctgt gcgatatcat gtcttttggg tgagtattca tccataacgc
     1801 gtccccttct tagcggttga actaacggac acctttcggg atggaaaaaa cttactgacc
     1861 tggacttgcc ctctcgtttg ttagcttaac tataagccac tctttgcagg tattcattgc
     1921 attattacga aaaattacaa ttaggaagga atcgggacag gactcacttt ttcatactag
     1981 cactaacccg cagcaggtaa aagcagtttg ctcgaactgt tcataacatt tcaggattat
     2041 cgccagatga aattggtgac actaatacca ggattgctct gaatatgacg taataaccga
     2101 ggaatgaata aagaattacc gcaaataatt aagaatagcc tctaaatgat tatggattat
     2161 taaatctatt agcgctactt aatataaatt aactaacaat cagtattttt tatgaatttt
     2221 atccgtggtt aatactggtt ttcgtatgag atcctgagtt ggtggttcaa ttactcctta
     2281 atgttcgtag gttatgcata aaaaaggccg cttgcgcggc cttagtgatt acatgttgta
     2341 tcaatgatga tcgacagtat ggctgtgctc gatatcttca ttcttgcggc taaagcggcg
     2401 gcgaaccacc acaaagaata ccggaacgaa gaagattgcc agtaccgttg cggtcaccat
     2461 cccgcccatt acaccggtac ctactgcgtt ctgcgcgccg gaaccagcac cagtactgat
     2521 aaccagcggc ataacgccga ggataaacgc cagcgaggtc atcaggatcg gacgtaaacg
     2581 catccgcact gcatcaagcg tcgcttcaat cagaccttta ccttctttat ccatcaagtc
     2641 tttggcgaat tcgacgataa gtatcgcgtt cttcgccgac aacccaatgg ttgtgagcag
     2701 gcctacttgg aagtaaacgt cattggtcag gccacggaag gtggcagcca gcaacgcacc
     2761 gataaccccc agcggaacga ccagcataac ggagaacgga atcgaccagc tctcgtacag
     2821 cgccgctaga cacaggaata cgacaatcaa cgaaatcgcg tacagtgaag gtgcctggtt
     2881 gccggagagg cgttcctgat aggacatccc cgtccagtca tagccaacac cggtaggcag
     2941 tttgctcgcc agttgttcca ttagctccat tgcttcaccg gtacttttac ccggtgccgc
     3001 ctggcctaag atttccatgg atggcaggcc attgtaacgt tccagacgcg gcgaaccgta
     3061 ctcccaacga gaagaggaga atgccgagaa cggcaccatc tgaccatcag cagcacgaac
     3121 ataccagtcg ccgatatcat ccggcagcat acggtatttc gcttctgaca tgacgtaaac
     3181 tttcttcaca cgaccgcggt cgataaagtc gttcacatag ctaccgcccc atgcagcgcc
     3241 cagagtggtg ttaatgtcgt tgatagaaac acccagcgcc tgcgcttttt cctggtcgat
     3301 atcaatctta aactgcgggg tatcttccag accgtttgga cgtacgctgg tcaacatatc
     3361 aggatgcttt gctgcttctg caagcagctg gttacgcgcc tgagtcagtt tttcgtgacc
     3421 aaggccagcc tggtcaatca gctcaaagtc aaagccggtt gcagtaccca gttccacgat
     3481 tgcgggcagg ttaaaggcga aaaccatcgc atctttgatt tgcgagaaag cgcgtgttgc
     3541 acgcatggta atcgcttcaa ctttgttttc ttcgcccgga cgatcggccc agtccttcaa
     3601 ggaaacgaac gcaataccgg tattctgacc acgtcccgca aagccgaagc cgttaacggc
     3661 gaacaccgac tcaacgttgt tcttttcttt ggtcagatag taatgcgtta cctcattgag
     3721 cactttctgc gtacgttcct gcgttgcacc tgctggcagc tgaaccatgg tcataaatac
     3781 gccctggtcc tcatctggca agaaggagct tggcagacgc acgaacagat aggccatgcc
     3841 gaccacgatg atcagataca gcaccaggta acgccccgta ctgcgcagaa taccgcctac
     3901 gctgtcggtg tagtggtgcg tgctcttctc gaacatgcgg ttaaaccagc cgaagaagcc
     3961 ttttttacct tccccgtgat cgcctttggc aatcggtttc agcatggtgg cacaaagagc
     4021 cggagtcagg atcaacgcta ccagtaccga cagcgccatt gctgaaacaa tggtaataga
     4081 gaactgacga tagatagcac cagtagaacc gccaaagaag gccatcggta cgaataccgc
     4141 tgacagtacc atcgcgatac cgaccagagc gccctgaatc tgccccatcg acttacgggt
     4201 agcttctttt ggcggcaaac cttcttccgc cataacacgc tccacgtttt ctaccacaac
     4261 gatagcgtca tccaccaaca agccgatggc gagcaccatc ccgaacattg ttagcgtgtt
     4321 tatcgagaag ccaaaggcgg caaggacggc aaaggtcccg agcaatacca ccggtacggc
     4381 aatggtcgga atcaacgtcg cgcggaagtt ctgcaggaac agatacataa ccaggaacac
     4441 gaggatgatc gcttcgacca gcgttttaac cacttcgtga atagagattt tcacgaacgg
     4501 cgtggtgtcg tacgggtaaa caattttcag acccgacggg aagaacggtt ccatcttcgc
     4561 cagttcagca cggattgccg cagcggtatc cagcgcattt gcaccggtcg ccagcttgat
     4621 ccccagaccg gaagccggtt ggccgttaaa ctctgcgatg atgtcgtagt tctcaccacc
     4681 cagctcaatc ttcgccacat cacgcagcag gacgcgggaa ccatcctgat tcactttcag
     4741 caggattttg ccgaactctt cagtagaggt cagacgcgtc tgagcaataa tagaggcgtt
     4801 aagctgttgg cctttcaccg gcggcgtacc accgagctga cccgccgcaa cctgggcgtt
     4861 ctgcgctttg atggcggtaa tgacatcaac cggcgttagc tggaatttgt tcagctcatt
     4921 cgggttcatc cagatacgca tcgcgtactg tgaaccgaac aactgaacat cacccacgcc
     4981 cgacgtacgg ctgatggcat ctttcatatt cgccgctacg tagtcagaga tatcctcctg
     5041 cgtcatggtg ccatcggtgt tgataacgcc gacaaccatc aggaagctgc tggatgattt
     5101 ctcaacgctc accccttgct gctgaacttc ttgcggcagc aacggcatcg ccagctgcag
     5161 tttgttctgc acctgaacct gcgcgatatc cgcatcagta ccagactcaa aggtcagggt
     5221 gatctgcacg gtccccgtgg agtcactgtt agaggacatg tacatcaggt tatcgatacc
     5281 gttcatattc tgttcgataa cctgtgtcac cgtgtcctgc actgttttcg catcagcgcc
     5341 ggggtaggag gcggagatcg ttactgccgg cggtgcaatc gtaggatatt gcgccaccgg
     5401 cagtttgagg atcgccagcc cccctgccaa catgatgata atggcgatca cccacgcaaa
     5461 aatcgggcga tcgataaaga aattaggcat gtcttaacgg ctcctgttta agttaagact
     5521 tggactgttc aggctgagca ccgcttgcgg cttgctggtt attatcagcg gtaacttctt
     5581 gtgcttttac ctggacacca ggacgcactt tctgcagccc acttattact acgcgatcgc
     5641 ctgctttcag accttctgtc accagccact tatcgccaat agcctggctt gcaacgatcg
     5701 gacgggtttc cactttgtca tccgcgccaa ctaccagtac ggtggcatca ccacgcggcg
     5761 tacgggttac gccctgttgc gggactaaaa tagcgtttgg attaagccct tcttccagac
     5821 gtgcgcgcac gaacataccc ggcagcagag tgtgatccgg gttcgggaag atagcgcgta
     5881 gggtgataga cccagtggtc tgatcaacgg taacgtcaga gaattccagc gtaccgtcct
     5941 gcgggaactt aatgccgtca ctggtgatca gcgacacttt ggctttgccg ttctcttgtt
     6001 tcagcgtgcc attcgccagt tcctgtttca ggcgcaggaa gtcgttgctg gactgggtca
     6061 catcaacgta gatcggatca agttgctgca cggttgccag cgcagtcgcc tgaccgttct
     6121 gtaccaatgc gccttccgtc acgttcgact taccaatgcg accgctaatc ggagcggtga
     6181 ctttggtgta agccagattg atccgcgcag tttcaacggc agctttcgcc gcagttaccg
     6241 cagcattcgc ctgttgcgca tcagccagag cctgatcgta ctcttgctta ctgatgtact
     6301 gagtaccgag cagtttctga taacgattca ccgtcaattg cgcgatattg gctgcagcct
     6361 gggctttcgc cagatcacct ttcgcactgt cgtatgtcgc ctgataggtc gcaggatcaa
     6421 tctgatagag agagacacca gcttcgatgt cgctaccttc tttgaaatta cgcttcagga
     6481 taatcccgct aacttgagga cgaacttctg cgatccggta ggcactggtg cgacccggaa
     6541 gctcggttgt gatctgcaga ggttcagttt tgactgttac tacgccaacg gcgggcatct
     6601 gctggccacc ttgttgggcc tgtttgttgt cacatcctgt tagggctaag ctgcctgaga
     6661 gcatcagaac gaccgccaga ggcgtaaacc ctctgttttt gttcatatgt aaacctcgag
     6721 tgtccgattt caaattggtc aatggtcaaa agttaataaa cccattgctg cgtttatatt
     6781 atcgtcgtgc tatggtacat acattcacaa atgtatgtaa atctaacgcc tgtaaattca
     6841 cgaacatatg gcacgaaaaa ccaaacaaga agcgcaagaa acgcgccaac acatcctcga
     6901 tgtggctcta cgtcttttct cacagcaggg ggtatcatcc acctcgctgg gtgagattgc
     6961 aaaagcagct ggcgttacgc gcggtgcaat ctactggcat tttaaagaca agtcggattt
     7021 gttcagtgag atctgggaac tgtcagaatc caatattggt gaactagagc ttgagtatca
     7081 ggcaaaattc cctggcgatc cactctcagt attaagagag atattaattc atgttcttga
     7141 atccacggtg acagaagaac gacgtcgatt attgatggag attatattcc acaaatgcga
     7201 atttgtcgga gaaatggctg ttgtgcaaca ggcacaacgt aatctctgtc tggaaagtta
     7261 tgaccgtata gaacaaacgt taaaacattg tattgaagcg aaaatgttgc ctgcggattt
     7321 aatgacgcgt cgggcagcaa ttattatgcg cggctatatt tccggcctga tggaaaactg
     7381 gctctttgcc ccgcaatctt ttgatcttaa aaaagaagcc cgcgattacg tcgccatctt
     7441 actggagatg tatctcctgt gccccacgct tcgtaatcct gccactaacg aataaccctg
     7501 aatctgactc caggattttt cctggacatt ttcgtcgttg ctattctggt tcactgcgtc
     7561 gtgatattct tgcggtttga ctttttcagg tcgttcttca ggttcagaaa ccttcattca
     7621 tcatgactat gttccagtat tacaaacgat cacggcattt tgttttttca gcatttattg
     7681 cttttgtttt tgtcttgtta tgccagaaca cggcgtttgc gcgggcgtca tcgaatggtg
     7741 atctgccgac aaaagcggac ctgcaggcgc aacttgactc actaaataaa caaaaagatc
     7801 tttctgctca ggacaaactg gagctgcagg atctgacaga tacattagcc accctcgata
     7861 aaatcgatcg cataaaagaa gagacagttc agctacggca aaaagtcgct gaagcgccgg
     7921 aaaaaatgcg ccaggcgacc gcggcgttaa cagcacttag cgatgtcgat aacgacgaag
     7981 aaacgcgcaa aattctgagt acgctttcgt tgcgccagct ggaaactcgc gttgcccagg
     8041 cgctggacga tttgcaaaac gcacaaaacg atctggcgtc ttataacagc cagctggttt
     8101 cgttacagac gcagcccgaa cgcgtgcaaa atgcgatgta taacgcttcg cagcagctgc
     8161 aacaaattcg cagtcgtctg gatgggactg atgtcggcga gactgcctta cgtcccagcc
     8221 agaaagtgtt aatgcaggct cagcaggcgt tgctgaatgc ggagattgac cagcagcgta
     8281 aaagcctgga agggaacacc gtcttgcagg ataccttgca aaagcaacgt gattacgtga
     8341 cggcgaacag cgcccgtctg gagcaccagt tgcagctgtt gcaagaagcg gtaaacagca
     8401 agcgcctgac tttaactgaa aaaacggcgc aggaagccgt ctccccggat gaagccgcgc
     8461 gtattcaggc taatccgctg gtgaaacagg aactggaaat taaccagcag ttaagtcagc
     8521 gtctgattac cgcgactgaa aacggtaatc agttgatgca gcaaaacatt aaagtcaaaa
     8581 actggctgga gcgggcgctg caatcggaac gcaatattaa agagcagatt gccgtcctga
     8641 agggcagcct gctgttgtct cgtatccttt accagcaaca acaaacgctg ccctcggcgg
     8701 atgaactgga aaacatgacc aaccgcatcg cggatttgcg tctcgaacag tttgaagtta
     8761 accagcagcg tgatgcactc ttccagagcg atgcgttcgt caacaaactg gaagaaggtc
     8821 acaccaacga agtcaacagc gaagttcacg atgcgttatt gcaagtggtt gatatgcgtc
     8881 gcgaattgct ggatcaactc aacaaacagt tgggtaacca gctgatgatg gccattaacc
     8941 tgcaaatcaa ccagcagcag ttaatgagcg tatcgaaaaa cctgaaatcc atcctgactc
     9001 agcaaatctt ttgggtgaac agtaaccgtc caatggactg ggactggatc aaagcgttcc
     9061 cgcaaagcct gaaagatgaa tttaagtcga tgaaaatcac ggtgaactgg gaaaaagcct
     9121 ggcctgccgt ttttatcgct ttcctcgccg gtttgccgct gctgttgatt gtcgggctga
     9181 tccactggcg tctgggctgg ctgaaagcgt atcaacaaaa actggcttcc gctgtgggtt
     9241 ccctgcgtaa cgatagccag ctcaacacac caaaagcgat ccttatcgac ctgatccgcg
     9301 cgctgccggt gtgcctgatt attctcgcgg ttggcttgat tctgttgacc atgcagctca
     9361 acatcagcga actgctatgg tcgttcagca aaaaactggc gattttctgg ctggtgtttg
     9421 gcctgtgctg gaaggtactg gagaagaacg gcgttgccgt gcgtcacttc ggcatgccgg
     9481 aacagcagac cagccactgg cgtcggcaaa ttgtccgcat cagtctcgca ttgctgccta
     9541 tccatttctg gtctgtggtg gcagaacttt ccccgctgca tctgatggat gatgtgctgg
     9601 ggcaagcgat gattttcttc aacctgctgc tgattgcctt cctggtatgg ccaatgtgcc
     9661 gcgaaagctg gcgtgataaa gagtcgcaca ccatgcgact ggtcaccatt accgtgctgt
     9721 cgattatccc gattgcattg atggtgctga ctgccacggg ttatttctac accacgctgc
     9781 gcctctccgg gcgttggatt gaaaccgttt atctggtgat catctggaac ttgctctacc
     9841 agacggtatt gcgcggctta agcgtagcgg cgcggcgtat cgcctggcgt cgtgcgctgg
     9901 cgcgtcggca gaatctggtg aaagagggcg cagaaggtgc cgaaccgccg gaagaaccca
     9961 ccattgcact ggaacaggtt aaccagcaga cgctgcgtat taccatgttg ctgatgtttg
    10021 cgctgttcgg tgtcatgttc tgggcaattt ggtccgattt gatcaccgtg ttcagctata
    10081 tcgacagcat tacgctctgg cattacaacg gtactgaagc tggcgctgcg gtggtgaaaa
    10141 acgtcaccat gggcagtctg ttgtttgcga ttatcgcctc aatggtggcc tgggcgttga
    10201 ttcgcaacct gcctggtttg ctggaagtgc tggtgctctc gcgactgaat atgcgccagg
    10261 gcgcgtcgta tgccattact accatcctta actacatcat tattgccgtt ggtgcgatga
    10321 cggtgttcgg atcgctgggc gtctcttggg ataaactcca gtggctggcg gcagcattat
    10381 ccgtaggtct tggttttggt ttacaagaaa ttttcggtaa cttcgtctcc ggtttgatca
    10441 ttctgttcga acgtccggtg cgtattggcg atacggtaac cattggtagc ttctcgggga
    10501 cggtaagtaa gatccgtatt cgtgcgacaa cgattaccga tttcgatcgc aaagaagtga
    10561 tcatcccgaa caaagcgttt gttaccgagc gtctgatcaa ctggtcgttg actgacacta
    10621 ctacgcgtct ggtgatccgt ctcggcgtgg cctatggctc cgatctggaa aaagtgcgta
    10681 aagtgttact gaaggcggcg actgagcacc caagggtgat gcacgaacca atgccggaag
    10741 tcttctttac ggcgtttggt gccagcacgt tggatcatga gctgcgtctg tatgtgcgtg
    10801 aactgcgtga ccgtagtcgt actgtcgatg agctgaaccg tactatcgat cagctgtgcc
    10861 gtgaaaacga catcaacatt gcctttaacc agcttgaagt gcatctgcac aacgagaagg
    10921 gcgatgaggt gacggaagta aaacgcgact acaaaggcga tgacccgacg ccagcggtag
    10981 ggtaataacc aaagggggcg acatttagtt gccccgagat tactgacaaa gtgcgcgttg
    11041 ttcatgccgg atgcggcgtg accgccttat ccggcctacg aaaccgcaag aattcaatgt
    11101 attgcaggag cggtgtaggc ctgataagcg tagcgcatca ggcagttttg cgtttgccca
    11161 caatcttagg ggacatttag cggccccatt tatttctcac ttttccgcct catcatcgcg
    11221 cgttaatttc ttttcataat cgcgttttac aatatccagc gcgcgcagca cggtgcgggc
    11281 tgggatctga ttttcttcca gcagcacaat caaatcgaca gccagtttga catcgtcagg
    11341 ggcattttcc agtgacatac tctctccatt gctagcgggt taagcgcgct agcctgtttt
    11401 cgattttttc cagcgcatgg cggcagcgtg ccaggcgcgc ttcataggct tccacttcac
    11461 gatgcagcgt ttgctgttcc acgagatcgg tcacccgcgc caggcgggct ctgcgttcgg
    11521 caaccatctc acgtagccgc cgctcaaaat cctgatgctg aatacgttta cgctgccagc
    11581 gggcaatttt cggtggcgca ctgtcccact cgcgcaatga ccaggcggag gcttcacgcg
    11641 cgatggcttc cagttgtgcc gccagatgtt ccgccagcca ggccacttgc ggcagctgtt
    11701 gctgctcaac tgcatgacga agcgcagcca gattatcgcc agcctcatcg agacaagcct
    11761 gcagtgttgt cgtacgggtt tgaaaaaggt gtctgtcaaa acgggcactt agcgtggcaa
    11821 attgcgctac cggggcacaa cgctgacgca gcgtagcgag ctgtccttcc agtttttcca
    11881 gcagcagggc ggttttcacg ataagacctc aatgaaaatg ataattgtta tgctaaagta
    11941 gccactctgt aagctgacaa cactcaatat gcaacgaatc attttaatca tcattggctg
    12001 gctggcggta gtgctgggta cgctgggcgt ggtattaccg gtattaccga cgacgccgtt
    12061 tatcctgctg gcggcctggt gctttgcccg ttcttccccg cgctttcacg cctggttgct
    12121 gtaccgctca tggtttggca gctatctacg tttctggcag aaacatcatg cgatgccgcg
    12181 cggcgtcaaa ccgcgggcga ttttgcttat tttgctcacg tttgccattt ctctgtggtt
    12241 cgtccagatg ccatgggtgc gcatcatgtt gctggtaatt ctcgcctgtt tgcttttcta
    12301 tatgtggcga attccggtga ttgatgaaaa gcaagaaaag cactgaagca caacaatcgc
    12361 agttgcaatt attgcgtaca gccagtacat tctggcgttt tcgagcacag gcgcaggcgg
    12421 tcaaaggtta aacaactgtt acttttgata cgtttaaaac gcgccgtgag taccaccgta
    12481 acaagcaggc atacacttat gaccgcgact gcacagcagc ttgagtatct caaaaatagc
    12541 atcaaaagca ttcaggacta cccaaaaccc ggcattcttt tccgcgatgt caccagctta
    12601 ctggaagacc cgaaagctta cgctctcagc atcgacttgc tggttgagcg ttacaaaaat
    12661 gcgggcatta ccaaagttgt cggcaccgaa gcgcgtggct tcttgtttgg cgctccggta
    12721 gctctgggtc tgggcgttgg ctttgtaccg gtccgtaaac cgggcaaact gccgcgtgaa
    12781 accatcagtg aaacttacga cctggaatac ggcaccgatc agctggagat ccacgttgat
    12841 gccatcaaac cgggcgacaa agttctggtg gtggacgatc tgctggcaac cggcggcact
    12901 atcgaagcga ccgttaaact gatccgtcgt ctgggtggtg aagtggctga cgctgcgttc
    12961 attatcaacc tgttcgatct cggcggcgaa cagcgtctcg aaaaacaggg cattaccagc
    13021 tacagccttg tcccgttccc gggccattaa ttatcgccag tcttgtgctg cccacgctac
    13081 ggacagcaca agatgtgcat tcagcctcgc cgttctgacg gggctgtgtt agcattaccc
    13141 cttcgtgaat ccaccttcca gcgtttcaga gcctgccaat gagttatcag gtcttagccc
    13201 gaaaatggcg cccacaaacc tttgctgacg tcgtcggcca ggaacatgtg ctgaccgcac
    13261 tggcgaacgg cttgtcgtta gggcgtattc atcatgctta tcttttttcc ggtacccgtg
    13321 gcgtcggaaa aacctctatc gcccgactgc tggcgaaggg gctaaactgc gaaaccggca
    13381 ttaccgcgac gccgtgcggc gtgtgcgata actgtcgtga aatcgagcag gggcgctttg
    13441 tcgatctgat tgaaatcgac gccgcctcgc gcaccaaagt tgaagatacc cgcgacctgc
    13501 tggataacgt ccagtacgct ccggcgcgtg gtcgtttcaa agtttatctg atcgacgaag
    13561 tgcatatgct gtcgcgccac agctttaacg cactgttaaa aacccttgaa gagccgccgg
    13621 agcacgttaa gtttctgctg gcgacgaccg atccacagaa attgccggtg acgattttgt
    13681 cgcgctgttt gcaatttcat ctcaaggcgc tggatgtcga gcaaattcgc catcaacttg
    13741 agcacatcct caacgaagaa catatcgctc acgagccgcg ggcgttgcaa ttgctggcgc
    13801 gcgccgctga aggcagcctg cgagatgcct taagtctgac cgaccaggcg attgccagcg
    13861 gtgacggcca ggtttcaacc caggcagtca gtgcgatgct gggtacgctt gatgacgatc
    13921 aggcgctgtc gctggttgaa gcgatggtcg aggccaacgg cgagcgcgta atggcgctga
    13981 ttaatgaagc cgctgcccgt ggtatcgagt gggaagcgtt gctggtggaa atgctcggcc
    14041 tgttgcatcg tattgcgatg gtacaacttt cgcctgctgc acttggcaac gacatggccg
    14101 ccattgagct gcggatgcgt gaactggcgc gcaccatacc gccgacggat attcagcttt
    14161 actatcagac gctgttgatt ggtcgcaaag aattaccgta tgcgccggac cgccgcatgg
    14221 gcgttgagat gacgctgctg cgcgcgctgg cgttccatcc acgtatgcct ctgcctgagc
    14281 cagaagtgcc gcgccagtcc tttgcacccg tcgcgccaac ggcagtaatg acgccaaccc
    14341 aggtgccgcc gcaaccgcaa tcagcgccgc agcaggcacc gactgtaccg ctcccggaaa
    14401 ccaccagcca ggtgctggcg gcgcgccagc agttgcagcg cgtgcaggga gcaaccaaag
    14461 caaaaaagag tgaaccggca gccgctaccc gcgcgcgtcc ggtgccatcg gcgctggaaa
    14521 aagcgccagc caaaaaagaa gcgtatcgct ggaaggcgac cactccggtg atgcagcaaa
    14581 aagaagtggt cgccacgccg aaggcgctga aaaaagcgct ggaacatgaa aaaacgccgg
    14641 aactggcggc gaagctagcg gcagaagcca ttgagcgcga cccgtgggcg gcacgggtga
    14701 gtcaactttc gctaccaaaa ctggtcgaac aggtggcctt aaatgcctgg aaagaggaga
    14761 gcgacaacgc agtatgtctg catttgcgct cctctcagcg gcatttgaac aaccgcggtg
    14821 cacagcaaaa actggctgaa gcgttgagca cgttaaaagg ttcaacggtt gaactgacta
    14881 tcgttgaaga tgataatccc gcggtgcgta cgccgctgga atggcgtcag gcgatatacg
    14941 aagaaaaact tgcgcaggcg cgcgagtcca ttattgcgga taataatatt cagaccctgc
    15001 gtcggttctt cgatgcggag ctggatgaag aaagtatccg ccccatttga tcgtaagcac
    15061 agcttacgtt cgtcatcctt aacgtgattg agagagaaac ctatgtttgg taaaggcggt
    15121 ctgggtaacc tgatgaagca agcccagcag atgcaagaaa aaatgcagaa aatgcaggaa
    15181 gagatcgcgc agctggaagt caccggcgaa tctggcgcag gtctggtaaa agtgaccatc
    15241 aacggtgcac acaactgccg tcgcgtagag atcgacccga gcctgctgga agacgacaaa
    15301 gagatgctgg aagacctggt ggctgcagca ttcaacgacg cagcacgtcg tattgaagaa
    15361 acgcagaaag aaaaaatggc ctctgtatcc tccggaatgc agctgccgcc tggctttaag
    15421 atgccgttct gatgcaaacc agcccgctgt taacacagct tatggaagca ctgcgctgtc
    15481 tgtcgggcgt tggcccgaag tcggcgcagc gtatggcgtt cacgctgctt cagcgcgatc
    15541 gtagcggcgg gatgcgtctg gcgcaggcgc tcacccgggc gatgtcggaa atcggccact
    15601 gcgccgattg ccgcactttc accgaacagg aagtctgtaa catctgttcg aatccgcgtc
    15661 gtcaggaaaa cggtcaaatc tgtgtggtgg agagtccggc ggacatctac gccattgagc
    15721 agacggggca gttttctggt cgttattttg tgttgatggg gcatctgtca ccgctggacg
    15781 gcatcggtcc ggatgatatc gggcttgatc gtctggaaca gcgtctggca gaggaaaaaa
    15841 tcactgaagt gatcctcgcc accaatccca cggttgaagg tgaagctacc gctaactaca
    15901 ttgccgagct ttgcgcgcaa tatgacgtgg aagctagccg aatcgctcat ggcgtaccgg
    15961 ttggcggcga actggaaatg gtcgatggca ccacgctgtc acactccctt gccgggcgtc
    16021 ataagattcg tttttaagca aacgagagca ggatcacctg ctctcgcttg aaattattct
    16081 cccttgtccc catctctccc tcatcctgtt tttaacctta aaatggcatt attgaggtag
    16141 acctacatga aaggacaaga aactcgtggt tttcagtcag aagtgaaaca gcttctgcac
    16201 ctgatgatcc attctctcta ttccaataaa gaaatcttcc tgcgtgagct tatctctaac
    16261 gcctccgatg cggcggacaa gctgcgtttc cgtgcgctat ctaacccgga cctgtacgaa
    16321 ggtgatggcg aactgcgcgt tcgtgtctct ttcgataaag acaagcgcac gctgaccatc
    16381 tccgataacg gcgtggggat gacccgcgac gaagtgattg accatctggg gactatcgct
    16441 aaatccggta ccaaatcatt cctcgaatcc ctgggttctg accaggcgaa agacagccag
    16501 ctgatcggtc agtttggtgt tggtttctac tctgcgttta tcgtggccga caaagtgact
    16561 gtgcgtactc gcgcggcagg cgaaaaacca gaaaacggcg tcttctggga atcggctggc
    16621 gaaggtgaat ataccgttgc cgacatcacc aaagaagatc gtggtactga aatcaccctg
    16681 catcttcgtg aaggcgaaga cgagttcctc gatgactggc gcgtgcgttc catcatcagc
    16741 aaatactccg accatatcgc gctgccggta gagatcgaaa aacgcgaaga gaaagacggc
    16801 gaaaccgtta tctcctggga gaaaatcaac aaagcgcagg cgctgtggac tcgtaacaag
    16861 tcggaaatca ccgatgaaga gtacaaagag ttctacaaac acatcgccca cgactttaat
    16921 gatccgctga cctggagcca caaccgcgtt gaaggtaagc aggagtacac cagcctgctg
    16981 tacatcccgt cccaggctcc gtgggatatg tggaaccgtg atcataaaca cggcctgaaa
    17041 ctgtacgtcc agcgtgtgtt catcatggac gacgcagaac agttcatgcc gaactatctg
    17101 cgcttcgtgc gtggtctgat tgactccagc gatctgccgc tgaacgtttc ccgtgaaatc
    17161 ctccaggaca gcacggtaac gcgtaacctg cgcaatgcgc tgaccaagcg tgtgctgcaa
    17221 atgctggaaa aactggcgaa agacgacgcg gaaaaatacc agaccttctg gcaacagttt
    17281 ggcctggtac tgaaagaagg tccggcggaa gatttcgcta accaggaagc gatcgccaaa
    17341 ctgctgcgtt ttgcttctac ccataccgat tcttctgcgc agaccgtatc tctggaagac
    17401 tacgtttccc gcatgaaaga agggcaggag aaaatctact acatcaccgc agacagctat
    17461 gcggcagcga agagcagccc gcacctggaa ctgctgcgta agaaaggcat cgaagttctg
    17521 ctgctttccg accgcatcga tgagtggatg atgaactatc tgactgagtt cgacggtaaa
    17581 ccgttccagt cggtgtctaa agttgacgag tcgctggaaa aactggctga cgaagttgat
    17641 gagagcgcga aagaagcgga gaaagcactg actccgttca tcgaccgtgt gaaagccttg
    17701 ctcggcgagc gcgtgaaaga tgtccgtctg actcaccgtc tgaccgatac gccagcgatc
    17761 gtttcgaccg acgcggacga aatgagcact cagatggcga aactgttcgc tgcggcgggc
    17821 cagaaagtgc cagaagtgaa atacatcttc gaactgaacc cggatcacgt actggtgaaa
    17881 cgtgcggcag atactgaaga tgaagcgaag ttcagcgagt gggtagaact gctgctggat
    17941 caggcgctgc tggcagaacg cggcacgctg gaagatccga acctgtttat tcgtcgtatg
    18001 aaccagctgc tggtttcctg atgtcatgcc ggatgacctt tgtgtcatcc ggcatttttc
    18061 ttttcatcat cagcactttc cgcaaattat ctcgccatta accgtttcag cctcaggtgc
    18121 ctttcttgag gcaatcgcct gttggtggta tcgtttatcg ctttttcaaa aaattcgaca
    18181 cattttaagg ggattttcgc aatgcgtatc attctgcttg gcgctccggg cgcggggaaa
    18241 gggactcagg ctcagttcat catggagaaa tatggtattc cgcaaatctc cactggcgat
    18301 atgctgcgtg ctgcggtcaa atctggctcc gagctgggta aacaagcaaa agacattatg
    18361 gatgctggca aactggtcac cgacgaactg gtgatcgcgc tggttaaaga gcgcattgct
    18421 caggaagact gccgtaatgg tttcctgttg gacggcttcc cgcgtaccat tccgcaggca
    18481 gacgcgatga aagaagcggg catcaatgtt gattacgttc tggaattcga cgtaccggac
    18541 gaactgattg ttgatcgtat cgtaggccgc cgcgttcatg cgccgtctgg tcgtgtttat
    18601 cacgttaaat tcaatccgcc gaaagtagaa ggcaaagacg acgttaccgg tgaagaactg
    18661 actacccgta aagacgatca ggaagaaacc gtacgtaaac gtctggttga ataccatcag
    18721 atgactgcac cgctgatcgg ctactactcc aaagaagcgg aagcgggtaa caccaaatac
    18781 gcgaaagttg acggcaccaa gccggttgct gaagttcgcg ctgatctgga aaaaatcctc
    18841 ggctaatcaa gccgcagcag atctgctttc gggcaggtct gctcatccac ctcaggcaat
    18901 acctctcaca gcaattagtt cttcttcctc acttttccgc tacaattatc aacaagttga
    18961 atcgataaga ggcggtaatg cgtcagacta aaaccggtat cctgctggca aacctgggta
    19021 cgcccgatgc ccccacacct gaagcggtaa aacgctatct gaaacaattt ttaagcgaca
    19081 gacgcgtggt tgatacctca cggttgttat ggtggccatt gctgcgcggc gttattttgc
    19141 cgctgcgctc gccgcgtgtg gcgaagctgt atgcctctgt ctggatggaa ggtggctcgc
    19201 cgctgatggt ttacagccgc cagcaacagc aggcgctggc acaacgttta ccggagacgc
    19261 ctgtagcgct gggaatgagc tacggctcgc catcactgga aagcgccgtc gatgaactcc
    19321 tggcagagca tgtagatcat attgtggtgc tgccgcttta tccgcaattc tcctgttcta
    19381 cggtcggtgc ggtatgggat gaactggcac gcattctggc gcgcaaacgt agcattccgg
    19441 ggatatcgtt tattcgtgat tacgccgata accacgatta cattaatgca ctggcgaaca
    19501 gcgtacgcgc ttcttttgcc aaacatggcg aaccggatct gctgctgctc tcttatcatg
    19561 gcattcccca gcgttatgca gatgaaggcg atgattaccc gcaacgttgc cgcacaacga
    19621 ctcgcgaact ggcttccgca ctggggatgg caccggaaaa agtgatgatg acctttcagt
    19681 cgcgctttgg ccgggaaccc tggctgatgc cttataccga cgaaacgctg aaaatgctcg
    19741 gagaaaaagg cgtaggtcat atacaggtga tgtgcccggg ctttgctgcg gattgtctgg
    19801 agacgctgga agagattgcc gagcaaaacc gtgaggtctt cctcggtgcc ggcgggaaaa
    19861 aatatgaata tattccagcg cttaatgcca cgccagaata tatcgaaatg atggctaatc
    19921 ttgttgccgc gtatcgctaa agctgagcgg taaagaactg agcgccgtcg cgaagagcct
    19981 cgtcggcggt tttcatcatt cgtgaataat gcaaaaaggc atgcagcgta cctgggtaga
    20041 gtttgaactc acagggctgc tgatgcgccg ctaacgtctg gtaaagcaga cggctgtcat
    20101 ccagcagcgg atcgaactcc gccccggcaa taaaacaggg cggaacttcg cgagtgagat
    20161 cattattaaa cagacagtaa tacggtgact cgcggtccgc gtcgttgctt aaatacgcct
    20221 cttcatacat ctgcaaatcc tgttgcgtta agccatccca gacaccgccc aacagacgac
    20281 gagtcacgga atcccgtaat ccgtaaagcc cataccacag caaaacaccc acaattttac
    20341 cgcaatcgat ctgtttatca cgcaaccaca acgcactggc gagcgccagc atggcacctg
    20401 cggaatcacc ggcaaagcca atgcgggaca tattgatttg ataatcctcc gcctgctggt
    20461 ggaaataaca acaagcagcc acaatttcct ctatcgcttg cggaaaacgc gcttcaggtg
    20521 aaagggggta atcaatacca atcaccgtac attggctgta gcttgccagc aggcgcatga
    20581 tgcgatcgtg ggtatcgaga ttgccgagaa taaaaccgcc tccatgcaaa taaaatagcg
    20641 tcgccgggct atctggctgc ggacaaaaga gacgtgtttc cacctgccca tattttgttg
    20701 gaaccatgta agctctggtt gccatttctg gagcgcccgc attccagaat cggcgctcaa
    20761 gcgtgtaata ctgtcgttgc tcagcaatcg ttcccgttgc gggccaggac ggtaaatccg
    20821 gctgaagagt attcacaacg gtcttcattt cagcagaaat aaggtccaga acaggtagtt
    20881 tgttttccgg cttcatacaa aaactccttt caaattacgt cattgtaagg aaccactgcc
    20941 atgaaaatgc gatcccgcct gctgatattg aaactggctg cgtctcgcgc gctcccgtca
    21001 gattgtgtta acattcgccg ctcagttaac cacccgtaaa aacaaccatg aaatttcccg
    21061 gtaaacgtaa atccaaacat tacttccctg taaatgcacg cgatccgctg cttcagcaat
    21121 tccagccaga aaacgaaacc agcgccgcct gggtcgtagg tattgaccag acgctggtcg
    21181 atattgaagc gaaagtggat gatgaattca ttgagcgtta tggattaagc gccgggcatt
    21241 cactggtgat tgaggatgac gtagccgaag cgctttatca ggagctaaaa cagaaaaacc
    21301 tgattaccca tcagtttgcg ggtggcacca ttggtaacac catgcacaac tactcggtgc
    21361 tcgcggacga ccgttcggtg ctgctgggcg tcatgtgcag caatattgaa attggcagtt
    21421 atgcctatcg ttacctgtgt aacacttcca gccgtaccga tcttaactat ctacaaggcg
    21481 tggatggccc gattggtcgt tgctttacgc tgattggcga gtccggggaa cgtacctttg
    21541 ctatcagtcc aggccacatg aaccagctgc gggctgaaag cattccggaa gatgtgattg
    21601 ccggagcctc ggcactggtt ctcacctctt atctggtgcg ttgcaaaccg ggtgaaccca
    21661 tgccggaagc aaccatgaaa gccattgagt acgcgaagaa atataacgta ccggtggtgc
    21721 tgacgctggg caccaagttt gtcattgccg agaatccgca gtggtggcag caattcctca
    21781 aagatcacgt ctctatcctt gcgatgaacg aagatgaagc cgaagcgttg accggagaaa
    21841 gcgatccgtt gttggcatct gacaaggcgc tagactgggt agatctggtg ctgtgcaccg
    21901 ccgggccaat cggcttgtat atggcgggct ttaccgaaga cgaagcgaaa cgtaaaaccc
    21961 agcatccgct gctgccgggc gctatagcgg aattcaacca gtatgagttt agccgcgcca
    22021 tgcgccacaa ggattgccag aatccgctgc gtgtatattc gcacattgcg ccgtacatgg
    22081 gcgggccgga aaaaatcatg aacactaatg gagcggggga tggcgcattg gcagcgttgc
    22141 tgcatgacat taccgccaac agctaccatc gtagcaacgt accaaactcc agcaaacata
    22201 aattcacctg gttaacttat tcatcgttag cgcaggtgtg taaatatgct aaccgtgtga
    22261 gctatcaggt actgaaccag cattcacctc gtttaacgcg cggcttgccg gagcgtgaag
    22321 acagcctgga agagtcttac tgggatcgtt aagttatcgt cggttcgtag gccagataag
    22381 gcgttcacgc cgcatctggc atttggctct cgatgcctga tgcgacgctg gcgcgtctta
    22441 tcatgcctac atatttttca tattttacat ccggcaacca ccgtttaccc cgtcaccacc
    22501 tcacccgccg gtggcgtttc cagcagttcc agcatggtac gggcgatttc acgctcgccc
    22561 atcactacct gattcgcacc acgttcggtg atatacgcca cttcatcgtc ataatgggcg
    22621 cgggcaataa tctcaatatc cggatttttc gcgcgggcag atgccacaat ctcacccgct
    22681 tcataaccgt tgggaatcgt caggatcagc cattttgcac attccagatg cgccagttgc
    22741 ataatttctt cgttcgccgc attgcccaat actgcgcgga ccccgcgctc tcgcagctca
    22801 tcaacacggg ttcgtgacgt ctcaatcacc accagcggaa tatcagaggc gagcaatttc
    22861 tcccccagca ggctgcctac acgaccgtaa cccaccagta gcgcatggtt gcaaatatcc
    22921 actgggatct gcttctcttc ttcgattgcc tcttccagcg tctgctcttc cagcgtttcg
    22981 gtcttcgcca gatatttctc cagtagtgcg aacagtaccg ggttgagcat aatcgacagg
    23041 atcgcccctg ccagtaccag gttttgtccg gcctgcggca gtaaattcaa tgccattccc
    23101 agtcccgcca ggataaacgc gaactcacca atctgcgcca ggctggcggc gatggttaat
    23161 gccgtacgtt gggagtgacc aaacagtcgc accaggaaaa atgcggctaa cgacttacca
    23221 aacagaataa tcgccagcgt cgccagcact gccagcggtt gctgaatcag aattaacgga
    23281 tcaaacaaca tcccgacgga gacaaaaaac agcaccgcaa acgcgtcgcg caatggcagc
    23341 gtatcgtggg cggcacggtg actcagttca gactcgttca gtaccatccc ggcaaagaac
    23401 gcaccgagtg caaaggagac atcaaacagc tctaccgcac caaaggcaat ccctaacgcc
    23461 agcgccagca ccgacagggt aaacagctcg cgagaaccgg ttgccgcgct gcgtgccata
    23521 atccacggca ccagacggcg acctaccagc atcataatgg cgataaatgc gatcactttg
    23581 ccgatggtga tccccatatc gactgcaaga gtggcaaagc ccacatcgcc ctgttccatc
    23641 attcctgcca ctgcgggcag caacaccagc gtcagaacca ttaccaggtc ttccacaatc
    23701 aaccaaccga tggcgatttg cccacgctga ctgtcaatta attgccgttc ttcaagtgcg
    23761 cgcagtaaca ccacggtact ggcggtggaa agacataaac cgaacacgat accggtcatt
    23821 aacgaccagc ccagcacggc agagagcgcc atacccagca gcgtcgccac ggctatctgg
    23881 gcgatcgcac cgggaatggc gatggccttt accgccatca aatccttcag cgaaaagtgc
    23941 aaaccgacgc caaacatcaa cagaatgacg cccagttcag ccagttccgg cgcaagcttg
    24001 gtatcggcaa caaagcccgg agtgaatggt cctgccagca cacccgctaa cagatatccc
    24061 accagaggag aaatacgtag tttattggcc agcatgccga ggataaaggc gagcacaagg
    24121 ccgccaacaa tggtggtgat aagcggggtg gcgtgatgca ttccgtctcc ttttcctggt
    24181 ggttattgtc catttttggc cgggaaaacc aaaattacag gtaatagttt atgacaattt
    24241 cattgatgat gttcatgaat aattattgaa ttttgcagaa aaatggaatt agctgcaaaa
    24301 aaagcacgga tcggaaaaca gaaggcggtt taacagagga aaggcttatg gcgactgtaa
    24361 aacgatgcag ccaaagtttg cctttggctg caatgaaatc agtctttatg ccggttatca
    24421 ggcaggaata tggtcaacat ccccaatagt ggcaggaaag cacagatttt atagactaac
    24481 tcgatgctgg tgtgatcggc gataagcccc agaactgccg ctcccagacc tcccatgcca
    24541 aaagcaaaac cgaaaaagag tccagaaacc ataccgatac gtcccggaag tagctcctga
    24601 gcgtagacca gaatggcaga gaatgccgaa gcgaggataa atccaataat caccgttaaa
    24661 acccccgtcc agtgcaggct ggcgtagggt aaaatcagcg taaacggcgc aacgccgagg
    24721 atagagcccc aaatcacata tttccgtcca attttatccc ctacaggccc gccgatcacc
    24781 gtacctgccg caacggcaaa caggaaggca aacagatgaa gctgggcatt ctggatagat
    24841 aatccgaatt tttgcatcag ataaaaggtg taatag
//
LOCUS       DAJVSY010000049        24815 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.049, whole genome shotgun sequence.
ACCESSION   DAJVSY010000049 DAJVSY010000000
VERSION     DAJVSY010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24815
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.049"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(226..3081)
                     /gene="valS"
                     /locus_tag="OQQ19_001785"
     CDS             complement(226..3081)
                     /gene="valS"
                     /locus_tag="OQQ19_001785"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000416368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HCS1803444.1"
                     /translation="MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNV
                     TGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTR
                     HDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRL
                     YKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLV
                     VATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCV
                     KITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQK
                     LERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKP
                     AVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRN
                     EEEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSG
                     FDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPL
                     DMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALAST
                     GRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFN
                     QTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLV
                     TVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTE
                     WLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVL
                     PADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEG
                     FVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL"
     gene            complement(3081..3524)
                     /gene="holC"
                     /locus_tag="OQQ19_001786"
     CDS             complement(3081..3524)
                     /gene="holC"
                     /locus_tag="OQQ19_001786"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004098129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HCS1803445.1"
                     /translation="MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACE
                     DEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTS
                     FADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK"
     gene            complement(3684..5195)
                     /gene="pepA"
                     /locus_tag="OQQ19_001787"
     CDS             complement(3684..5195)
                     /gene="pepA"
                     /locus_tag="OQQ19_001787"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HCS1803446.1"
                     /translation="MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYIS
                     ALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLND
                     TGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFN
                     VPTRRELTSGERAILHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNV
                     ITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDS
                     GGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRP
                     GDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHI
                     TGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITA
                     GCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE"
     gene            5462..6562
                     /gene="lptF"
                     /locus_tag="OQQ19_001788"
     CDS             5462..6562
                     /gene="lptF"
                     /locus_tag="OQQ19_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HCS1803447.1"
                     /translation="MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIP
                     ANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAA
                     MILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF
                     IESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTAL
                     LRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTV
                     FMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTV
                     NLIYLALAIVLNLWDTVPVRRLRASFSRKGAV"
     gene            6562..7644
                     /gene="lptG"
                     /locus_tag="OQQ19_001789"
     CDS             6562..7644
                     /gene="lptG"
                     /locus_tag="OQQ19_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313266.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HCS1803448.1"
                     /translation="MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ
                     GSYDALGAGMYTLLSVPKDVQTFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQV
                     ALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNF
                     VYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPK
                     QITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMW
                     SKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYG
                     IPPIIGALLPSASFFLISLWLLMRKS"
     gene            complement(7805..9307)
                     /locus_tag="OQQ19_001790"
     CDS             complement(7805..9307)
                     /locus_tag="OQQ19_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 domain-containing protein"
                     /protein_id="HCS1803449.1"
                     /translation="MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLA
                     ESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLTRLKNIGVNDWQPHANPVVVWDIFG
                     EKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQY
                     IGDNAKSFQNQYGNISSASVGAIQRGLLSLEKQGAAHFFGEPMLDIKDWMRTDTNGKG
                     VINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAP
                     QVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAV
                     KAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTE
                     DERNGLINHSPVYGKYEDDVDRESAYEMLQKGFQASTKQQNNPPAKGKAVAVDDGILG
                     GLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR"
     gene            complement(9437..10456)
                     /gene="ahr"
                     /locus_tag="OQQ19_001791"
     CDS             complement(9437..10456)
                     /gene="ahr"
                     /locus_tag="OQQ19_001791"
                     /EC_number="1.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent aldehyde reductase Ahr"
                     /protein_id="HCS1803450.1"
                     /translation="MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSD
                     LSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDAC
                     ISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKP
                     LLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVN
                     SRDPQALKALSGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLI
                     AGDRSISGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIKHVRDGKARYRVV
                     LKADF"
     gene            10652..10736
                     /locus_tag="OQQ19_001792"
     tRNA            10652..10736
                     /locus_tag="OQQ19_001792"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10686..10688,aa:Leu,seq:caa)
     gene            10900..12165
                     /locus_tag="OQQ19_001793"
                     /pseudo
     CDS             10900..12165
                     /locus_tag="OQQ19_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001522431.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
     gene            complement(12220..13230)
                     /locus_tag="OQQ19_001794"
     CDS             complement(12220..13230)
                     /locus_tag="OQQ19_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803451.1"
                     /translation="MIYITSESKETLMIKYEGKMKKNIRVIPKNIHSKLRRLGNTVVA
                     GTSIAFTENQLKSGALEHLGIYFDNGVNAYETSVIPDPLQGKYSLKNVFGEEIVRKDL
                     PKETHYTEIESPNWGDSSNGTHTVRLPYEKYPRDIIPPTLIAIEINHKQPSDSHFIFN
                     FRVTRILDKQSNKFDDELLFDLNLLQENLGKCGIEDADKPISTYADTLIVSWEIFPPG
                     SKEETLARIFRGKNITSDKKNVAENRYDFFMSLEPKKIVTGNSTFSNYIGAMLEDDLV
                     VFENIEYGNAIYILYDNWDDISKLSRIDLLSGRAGSNFDRIIHSGNWKDEVRKKVAAG
                     RL"
     gene            complement(13181..13717)
                     /locus_tag="OQQ19_001795"
     CDS             complement(13181..13717)
                     /locus_tag="OQQ19_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004152200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803452.1"
                     /translation="MLKAIAGIAKYTWIYMAIFIISLMIISSSDINYVYNDFANYCTL
                     LVSVSGMVFTIMGIWLAFLYPNALQRIVNPKTIETVDFTEQLEDTRRLEAIVGSVLKS
                     SFVMITLLVVYLVKLVFFKSHLYLESQDVIKNTSLALIIAISYMQIEAVISVILANVM
                     FINDLHNKREQRDIDDQV"
     gene            complement(13718..14797)
                     /locus_tag="OQQ19_001796"
     CDS             complement(13718..14797)
                     /locus_tag="OQQ19_001796"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803453.1"
                     /translation="MNVGHLNFFKVNKCGLYKVNDDNTYGLELSETFDLIQDWVGTKS
                     LALTIPWDPKEKPNSSKCYCKDIYKDENTGDFLVMLWKSDTDSTGSLLGASEDGEIGS
                     SSVVKYTNSYRGKKVIWGRPCFYWVIPELETIVSIKFDHSVCDSELFQDYVHSSITNR
                     VKHSKRVKNKTEKGYIRLSNTDDEDLYKYMYRFDMKLRSLETTHTELGKLIPKITHIV
                     RRETIIINPNDARADWLKTFSTLVPFVSGKKNAKTRQIEIKAEAKPSLNEVQEIIEKY
                     SAEDREKRLWDNVGFATDKGITWVDKYRMRDILNVPSDDYSTYSAAYIYEQISHKRKE
                     FISPILKELKALQSQPRIKKASGED"
     gene            complement(15195..15767)
                     /locus_tag="OQQ19_001797"
     CDS             complement(15195..15767)
                     /locus_tag="OQQ19_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001774583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Polarity suppression protein"
                     /protein_id="HCS1803454.1"
                     /translation="MESTALQQVFDTCQNNKAAWLQRKNELAAAEQEYLRLLSGEGRN
                     VSRLDELRNIIEVRKWQVNQAAGRYIRSHEAVQHISIRDRLNDFMQQHGTALAAALAP
                     ELMGYSELTAIARNCAIQRATDALREALLSWLAKGEKINYSAQDSDILTTIGFRPDAT
                     SVDDSREKFTPAQNMIFSRKSAQLASRQSV"
     gene            complement(15841..16341)
                     /locus_tag="OQQ19_001798"
     CDS             complement(15841..16341)
                     /locus_tag="OQQ19_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001405508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ogr/Delta-like zinc finger family protein"
                     /protein_id="HCS1803455.1"
                     /translation="MIYCPSCGHVAHTRRAHFMDDGTKIMIAQCRNIYCSATFEASES
                     FFSDCKDSGMEYISGKQRYRDSLTSASGSMKRPKRMLVTGYCCRRCKGLALSRTSRRL
                     SQEVTERFYVCTDPGCGLVFKTLQTINRFIVRPVTPDELAESLHEKQELPPVRLKTQS
                     YSLRLE"
     gene            complement(16338..17072)
                     /locus_tag="OQQ19_001799"
     CDS             complement(16338..17072)
                     /locus_tag="OQQ19_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001600374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein 3"
                     /protein_id="HCS1803456.1"
                     /translation="MSDNTIPEYLQPALAQLEKARAAHLENARLMDETVTAIERAEQE
                     KNALAQADGNDADDWRTAFRAAGGVLSDELKQRHIERVARRELVQEYDNLAVVLNFER
                     ERLKGACDSTATAYRKAHHHLLSLYAEHELEHALNETCEALVRAMHLSILVQENPLAN
                     TTGHQGYVAPEKAVMQQVKSSLEQKIKQMQISLTGEPVLRLTGLSAATLPHMDYEVAG
                     TPAQRKVWQDKIDQQGAELKARGLLS"
     gene            17624..17890
                     /locus_tag="OQQ19_001800"
     CDS             17624..17890
                     /locus_tag="OQQ19_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015979398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family transcriptional regulator"
                     /protein_id="HCS1803457.1"
                     /translation="MQAVFSSPSPAPVTPLMPLPDITQERFLRLPEVMHLCGLSRSTI
                     YELIRKGEFPPQVSLGGKNVAWLHSEVTAWMAGRIAGRKRGYDA"
     gene            17887..18486
                     /locus_tag="OQQ19_001801"
     CDS             17887..18486
                     /locus_tag="OQQ19_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000980235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host cell division inhibitor Icd-like protein"
                     /protein_id="HCS1803458.1"
                     /translation="MMMPALQKLPFSGLPFSGICGYSFSAAAKSAAGRENPSNSQATY
                     DAPRVFFCVAINATERQIMVWCVVSRADGIPCILPASAHYAAESMVAQAGQPPGWPVS
                     CEAGILTPVWAIAIERENSGDSVICYSQEAAIMATTLTPSHPEFVFVFAAVRRADRHP
                     RICMLRTVAGDERSARRSLVRDYVLSLAARLPVVEVSRA"
     gene            18479..18766
                     /locus_tag="OQQ19_001802"
     CDS             18479..18766
                     /locus_tag="OQQ19_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001244665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Derepression protein"
                     /protein_id="HCS1803459.1"
                     /translation="MRNKKAPQTVSARHDAREHLSIEAYHKLNRASAVSQFVGGDLIH
                     RELSGLHQLYIPHIFSYLNEDIDFVLNELKAKGLCRDFLAQQKDRGDRTHV"
     gene            18759..19214
                     /locus_tag="OQQ19_001803"
     CDS             18759..19214
                     /locus_tag="OQQ19_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016569899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803460.1"
                     /translation="MFDFPQPGEIYRSAGFPDVAVVGILEDGIPWEMPYRCPDIVWNP
                     YRRKFSILVRILADGRTTDIPLGRFLREFTCDRPDLFKRSPVNRHAVLKEMAGDPELQ
                     KWREKYLDIYPQDTVPVSRAAPVAREWREIPRTEPDPEITPDNSYRNYL"
     gene            19350..19670
                     /locus_tag="OQQ19_001804"
     CDS             19350..19670
                     /locus_tag="OQQ19_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5375 domain-containing protein"
                     /protein_id="HCS1803461.1"
                     /translation="MKTPLPPVLRAALYRRAVACAWLTVCERQHRYPHLTLESLEAAI
                     AAELEGFYLRQHGEEKGRQIACALLEDLMESGPLKAAPSLSFLGLVVMDELCARHIKA
                     PVLH"
     gene            19685..22018
                     /locus_tag="OQQ19_001805"
     CDS             19685..22018
                     /locus_tag="OQQ19_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000783678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HCS1803462.1"
                     /translation="MKMNVTATVSHALGHWPRILPALGIQVLKNHHQPCPVCGGSDRF
                     RFDDREGRGTWYCNQCGAGDGLKLVEKVFGVSPSDVAAKVAAVTGSLPPADPAVTAAA
                     VAETDAARKNAAALAQTLMAKTRPGTGNAYLTRKGFPGRECRMLTGTHRAGGVSWRAG
                     DLVVPLYDDSGELVNLQLISADGRKRTLKGGQVRGTCHTLEGQNQAGKRLWIAEGYAT
                     ALTVHHLTGETVMVALSSVNLLSLASLARQKHPACQIVLAADRDLSGDGQKKAAAAAD
                     ACEGVVALPPVFGDWNDAFTQYGGEVTRKAIYDAIRPPAESPFDTMSEAEFSAMSTSE
                     KAMRIYEHYGEALAVDANGQLLSRYENGVWKVLPPLDFARDVAGLFQRLRAPFSSGKV
                     ASVVDTLKLIIPQQEAPSRRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVE
                     GETLETHAPAFWRWLDRAAGGRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKS
                     IMAEIATLLAGEDNATSATIETLESPRERAALTGFSLIRLPDQEKWSGDGAGLKAITG
                     GDAVSVDPKYRDAYSTHIPAVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERD
                     PQLKDKITRELAVIVRHLMQKFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIGYL
                     ETLPQTSGMYMGNASIIPRNYRKYLYHAYLAYMEANGYRNVLSLKMFGLGLPVMLKEY
                     GLNYEKRHTKQGIQTNLTLKEESYGDWLPKCDDPATT"
     gene            22365..22559
                     /locus_tag="OQQ19_001806"
     CDS             22365..22559
                     /locus_tag="OQQ19_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001365036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCS1803463.1"
                     /translation="MWIKDALVWIRATDPNLLIKNYLTFRFIDGLKIDWSEKQWGHKR
                     GHISLLCFIICFLSLTYFDI"
     gene            22777..24045
                     /locus_tag="OQQ19_001807"
     CDS             22777..24045
                     /locus_tag="OQQ19_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HCS1803464.1"
                     /translation="MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRF
                     GGKQHLMAFGVYPDVSLADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKV
                     AREWLVTNQKWSEEHANRVKKSLEDNIFPAIGSHNIAELGTRDLLIPIKAVEKSGRLE
                     VASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLQKID
                     EYTGRPLTRWATELTLLIFIRSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRG
                     AKMRTPHLVPLSKQALAILKQIKQFCGEHELIFIGDHDPSKPMSENTVNSALRVMGYD
                     TKVEVCGHGFRTMACSSLIESGLWSKDAVERQMSHMERNSVRAAYIHKAEHLDERKLM
                     LQWWADFLDANREKGITPFDYAKINRGNGE"
     gene            24436..>24815
                     /locus_tag="OQQ19_001808"
     CDS             24436..>24815
                     /locus_tag="OQQ19_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001009620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803465.1"
                     /translation="MNFKKKLEEHFKQFEASPVLFVGSGVSRRYLGVPCWQDLLKHFA
                     EAIGENHIKLKTKSNGDLPEYAQLLVSAYAEKWWDTEEGQLALSEKEQEKTFINEQSP
                     LKLSISKYIENAHKNIIDNDELKH"
BASE COUNT         5921 a         6425 c         6148 g         6321 t
ORIGIN      
        1 atctgatgga aatggaagcc acgcaagcac cttaaaatca ccatcataca ctaaatcagt
       61 aagttggcag cattaccgac cttcctttaa tcaataaaga agaacaacca gataaaggct
      121 tcttagccag tatttcacgg ggaattatgc cttctttacc atttctgtaa gagataaaaa
      181 aggccggagc atgctccggc cttcgttttc atcactgtgt tttgattaca gcgcggcgat
      241 aacagcctgc tgttcaatca gcttcgcttt cgcttctgca tagccttcca gcttctcacg
      301 ctctttcgcg atgaccgctt ccggtgcgcg ggcgacaaag ccttcattcg ccagcttgtt
      361 ctcgatacgg ctgatttcgc cttcgatctt cgccacttct ttcgccagac gcgccagctc
      421 atcttctttg ttgatgaggc cagccatcgg gatcagcagc tctgcgccgt cgatgatctt
      481 cgtaacggaa accggacctt tgtcatcggc aggcagcacg gtgatgcttt ccagacgcgc
      541 cagggtttgc aggaagccac ggttttcatt tacgcgacgt tctgcatccg cgctgcaacc
      601 acgcagcagc agctccagcg gtttgcccgg cgcgatgttc atttctgcac ggatgttacg
      661 taccgcaacg atcgcctgtt tcagccactc ggtgtcagcc agtgcggctt catcaacctg
      721 agatgcatcg tactgcggga acggctgcag catgatggtg tcggcagtga taccgcaaag
      781 tactttcaca cgctgccaga tggtttcggt gatgaacgga atgatcggat gcgcgaggcg
      841 cagcagacct tccagtacag tcaccagcgt atggcgagta ccgcgcagtt cggcttcggt
      901 tccaccgttc attaccggct tagtcagctc cagataccag tcgcagaact ggttccaggt
      961 gaactcatac agaatgcctg cagcgatatc gaagcggaag ctgtccagcg cttcgcggta
     1021 cgctttgatg gtctggttga actctgccag aatccagcgg tccgccagcg acagcgtcat
     1081 ttcaccaccg ttgaagccgc aatcctgacc ttccgtgttc atcagcacaa agcggctggc
     1141 gttccacagc ttgttacaga agttacggta gccttccagg cgtttcatat cccagttgat
     1201 gtcacgaccg gtagaagcca gcgccgccag ggtgaagcgc agggcatcgg tgccgtgcgg
     1261 ctcaatgccg ttcgggaact gtttctcggt gcgcttacgg attttgtccg ccagctgcgg
     1321 ctgcatcata ttgccggtac gtttctccag cagttccggc agcgaaatac cgtcaaccat
     1381 atccagcggg tcaataacgt tacccttgga tttggacatc ttctggcctt cgtcgtcacg
     1441 aatcaggccg gtcatgtaaa cggtgtggaa cggcacctgc ggtttgccat tttcatcttt
     1501 gatgaagtgc atggtcatca tgatcatgcg ggcaatccag aagaaaatga tgtcgaaacc
     1561 agataccatc acgctggttg ggtggaactg gcgcagtgcg tcggtgtttt ccggccagcc
     1621 tagggtagag aaggtccaca gcgcagaaga gaaccaggtg tcgagaacgt cttcgtcctg
     1681 acgcagggca acgtcggcac cgaggttatt ttccttgcgc acttcttctt cgttgcggcc
     1741 aacataaacg ttacctgctt cgtcgtacca tgcagggata cggtgacccc accacagctg
     1801 acgagagata caccagtcct gaatatcgcg catccaggag aagtacatgt tttcgtactg
     1861 cttcggtacg aactgaatgt cgccgttctc aaccgcctca accgccggtt tcgccagtac
     1921 atcggcacgc acgtaccact ggtcggtgag catcggttcg ataactacgc cgccacggtc
     1981 gccgtaaggc acggtcaggt cgtgcggttt aatttcttcc agcaggccga gcgcgtcaac
     2041 cgcagcaacg actgctttac gtgcagcaaa acgctccagt ttctggaact ctgccgggat
     2101 ttcgctggaa taaacgtcag attcgttacc tttggtatcg aacacctggg cgctttcacg
     2161 gatatcgccg tcaaaggtca ggatgttgat catcggcagc gcgtgacgtt tacccacttc
     2221 atagtcgtta aagtcgtgcg ccggagtgat tttcacgcag ccggtgcctt tttccatgtc
     2281 ggcgtgttcg tcgccaacga tcggaatacg acggttaacc agcggtagaa tgacatattt
     2341 gccaatcagg tctttgtaac gcggatcttc cgggttaacg gccacgccgg tatcgcccaa
     2401 cagggtttcc ggacgggtag tcgcaaccac cagataatct ttaccgtctg cggttttcgc
     2461 gccgtcagcc agcggatagc ggatgtgcca catcgaacct ttcgattcgc ggttttccac
     2521 ttccaggtca gagatagcgg tgcgcagttt cggatcccag tttaccaggc gtttgccacg
     2581 gtaaatcagg tcttctttat acagacgaac gaaaacttct ttcaccgcat tggacaggcc
     2641 ttcgtccatc gtgaagcgtt cacgctccca gtcgacggag ttgccaagac ggcgcatctg
     2701 acgggtaatc gtgccgccgg attccgcttt ccattcccaa attttgtcga tgaaagcttc
     2761 gcggccgtag tcgtgacggg ttttaccttc ttctgcggca atcttgcgct caacgaccat
     2821 ctgggtagcg atcccggcgt ggtcagtacc gacctgccac agggtgtttt tgccctgcat
     2881 gcgctgatag cggatcatgg tatccatgat ggtttgctgg aaggcgtgac ccatatgcaa
     2941 actgccggtg acgttcggcg gcgggatcat gatgcagaaa ctttcctggc tttcatcgcc
     3001 attaggctta aagtagccct gcttttccca gtgctcgtaa agcggctgtt cgatatcttg
     3061 tgggttatat gtcttttcca ttatttccag gttgccgtat tcaggttgaa accagccacg
     3121 cggtaggctt tatagcgttc gcgcgccagt tgtttcagag aatcttcata aggaacgaag
     3181 tctaccactt ctgtgaaagc ggtggcaaaa tctgcaaagc ttgttcgcag actaatcaat
     3241 atatcgcgcg ggctgctgct gcgtttttgc ggccaggcga tctccaccgg cgcaccgccg
     3301 cgcggtcctt ctcccgctaa attatgcgga acaaagcttt ctgccggacg cgcccacagg
     3361 gcttcatcca gccggtaagc ctgcttttca tcttcacagg cgatgagcac gcgcttaccg
     3421 ctgcgccaac gttctgcggc aatttcacac accagttgct caacggcgct taagccatcg
     3481 acggtggtgt cattgtccag aaggtagaac gtcgcgtttt tcatatatgg ggcttcttgt
     3541 ggtggattta aatacgcatc aggtatacac cgcagcgcct gatgcgacgc tgttgtgtct
     3601 tatcaggcct acgagttcag tgctgtgtag gtcggataag gcgttcacgc cgcatccggc
     3661 aataacagcc ttgcctgacg caattactct tcgccgttaa acccagcgcg gtttaacagg
     3721 aactgtgcca gcaacgccac cggacgaccg gtggcgcctt ttgctttacc agaacgccag
     3781 gcggttccgg cgatatctag gtgcgcccag ttgtacttac gggtaaagcg cgacaggaag
     3841 caacctgcgg taatcgcccc accaggacga ccgccaatgt tcgccatatc ggcaaaattg
     3901 gactccagct gttcctgata ctcgtcaccc agcggtaagc gccatgcgcg gtcaccggat
     3961 tgttcagacg cggcaatcag ttcatgggcc agcggattat ggttcgccat cagaccggta
     4021 atgtgatgac ccagcgcgat cacgcaggca ccggtcagcg tcgccacgtc aatcaccgct
     4081 tccggctcaa aacgctcaac gtaagttaac acgtcgcaca gtaccaggcg gccttcagcg
     4141 tcggtattca gcacttcaac agtttgaccg gacatggtgg ttaacacatc gcccggacga
     4201 taggctcgtc cgccaggcat gttttcgcag cctgccaaca cgccgataac gttaatcggc
     4261 agttgtagct ccgcgaccat ccgcatcacg ccgtaaaccg ctgccgcacc gcacatatcg
     4321 tacttcatct catccatgcc ttctgaaggc ttgatcgaga taccgccgga gtcgaaggtt
     4381 aaacctttac ccaccagcac gattgggcgt gcatcttccg acgcgttgcc tttgtactca
     4441 atcaccgaca tcagcgattc gttttgcgaa ccctgaccga ccgccagata ggaatgcatc
     4501 cccagctctt tcatctgctg ttcgccgata acgcgggtga tgacattctt gctgtagctg
     4561 tcagccagct ggcgcgcttg tgaagcgagg taagcggcgt tacagatatt cggcggcata
     4621 ttgccgagat cttttgctgc tttaatcccg gcggcaatcg ccagaccgtg caggatcgcg
     4681 cgctcaccgc tggtcagttc acggcgggtc ggcacgttga acaccatttt acgcagcgga
     4741 cgacgcggtt cgctcttgtt cgttttcagc tgatcgaaac tgtagagcgt ctcttttgcc
     4801 gtctcgacag cctgacgcac tttccagtag ttgttacggc ctttaacgtg cagttcagtc
     4861 agaaagcaga ccgcttccat tgagccagta tcattcagcg tattaatggt tttctgaata
     4921 acctgcttgt actgacgctc atccagctca cgttctttgc cgcaaccaat aaggagaatt
     4981 cgctcggaaa gtacattcgg aacatggtgc agcaacaatg tctgccccgg ttttccttcc
     5041 agttcgcccc gacgtagcag ggcgctgatg tacccatcgc tgattttatc gagctgttct
     5101 gcaatcggag aaaggcgacg tggttcgaag acgcccacga cgatgcaggc actccgctgt
     5161 ttctccgggc taccgctttt tacactaaac tccatgcact acgctcctga atcttaaaga
     5221 caacggcggt ggctacagat agaattgcaa gctttcgtaa ctcatgtccg ctgttgcgat
     5281 gacttcgtgt taatcttaac gttattacgg cattggcacg tcagaacaaa atctgagagg
     5341 tgaatccgtt gagtataatt atcttagcga cgatttcgac gactcaagag aataaatgac
     5401 gtttaagcca tgaaacaagc taaaatcctg caaaagacga gtttttacgg gcgtatttaa
     5461 agtgataatc ataagatatc tggtgcggga gacgctcaaa agccagctgg cgatactctt
     5521 catcttgctt ttgatcttct tctgtcaaaa gttagtgagg atcctcggcg cagcggttga
     5581 cggcgatatt ccggcgaatc tggtgctctc ccttctcggg ttgggcgtgc cggaaatggc
     5641 gcagcttatc ctgccattaa gcctgttcct cgggctgctg atgacgctgg gcaaactgta
     5701 taccgaaagt gaaattacgg taatgcatgc ctgcggcctg agcaaagcgg ttctggtgaa
     5761 agcggcaatg atccttgcgg tattcactgc aatcgtcgcg gcggttaacg tgatgtgggc
     5821 gggaccgtgg tcatcgcgtc atcaggatga agtgttagca gaagcgaaag cgaaccctgg
     5881 catggcggcg ctggcgcaag ggcaattcca gcaagcgact aatggcagct cggtgctgtt
     5941 catcgaaagc gttgacggca gcgatttcaa agatgtgttc ctcgcgcaaa ttcgaccaaa
     6001 aggtaatgca cgtccttctg tggtggtggc cgattccgga catttaaccc agctgcgcga
     6061 cggctcccag gtcgtcactc tcaaccaggg aacgcgcttc gaaggcactg cactgttacg
     6121 tgatttccgc attacggact tccaggatta tcaggcgatc attggtcacc aggcggtagc
     6181 gctcgacccg aacgataccg accagatgga catgcgtaca ttgtggaaca ctgacaccga
     6241 tcgtgcccgc gcagaactga actggcgtat cacgttggta ttcaccgtgt ttatgatggc
     6301 acttatggtc gtaccgctga gcgtggttaa cccgcgtcag ggacgcgtac tatcgatgct
     6361 gccagccatg ctgctgtatc tacttttctt cctgatccag acctccctga aatcgaacgg
     6421 cggtaaaggt aagctggacc cgacgctgtg gatgtggacc gttaacctga tttatctggc
     6481 tttggcgatt gttctcaacc tttgggacac cgtgccggtc cgccgcctgc gcgccagttt
     6541 ttcgcgtaaa ggagcggtgt gatgcaacct tttggcgtac ttgaccgcta tatcggtaaa
     6601 actattttca ccaccatcat gatgacgctg ttcatgctgg tgtcgctgtc gggcattatc
     6661 aaatttgtcg atcagctgaa aaaagccggg caggggagtt acgacgcgtt aggcgcagga
     6721 atgtatacct tgctgagcgt gccgaaagat gtgcaaacat tcttcccgat ggcggctctg
     6781 cttggggcgt tgcttggtct tgggatgctg gcgcagcgca gcgaactggt ggtgatgcag
     6841 gcttctggtt tcacccgtat gcaggttgcg ctgtcggtga tgaaaaccgc cattccgctg
     6901 gtcttgctga cgatggcgat tggtgaatgg gtcgcgccgc agggcgagca gatggcgcgt
     6961 aactaccgtg cgcaggcgat gtacggcggc tcgttgctct ctacccagca aggcttatgg
     7021 gcgaaagatg gcaacaactt cgtttacatt gagcgggtta aaggtgacga agagttaggt
     7081 ggcatcagta tttatgcctt taacgagaat cgtcgtctgc aatccgtacg ctatgccgct
     7141 actgcgaagt ttgacccgga acataaagtc tggcgtctgt cgcaggttga tgaatctgat
     7201 ctgaccaatc cgaaacagat caccggttcg cagacggtga gcggcacctg gaaaaccaac
     7261 ctcacgccgg acaaactggg cgtggtggcg ctggacccgg atgcactctc aatcagcggt
     7321 ttgcacaact acgtgaagta tctgaagtcg agcggtcagg atgccggacg ttatcagctc
     7381 aatatgtgga gcaaaatctt ccagccgcta tccgtggcgg tgatgatgct gatggcgctg
     7441 tcgttcatct ttggcccact gcgtagcgta ccgatgggcg tgcgtgtggt caccggtatc
     7501 agcttcggtt ttgtcttcta cgtactggac cagatcttcg gcccgctgac gttggtttat
     7561 ggcatcccgc cgatcatcgg cgcactgttg ccaagcgcca gcttcttctt aatcagcctg
     7621 tggctgttaa tgagaaaatc gtaaccgaat gaacgaataa agggagcgaa agctcccttt
     7681 attattgtta gcaaagtgtg cttcgttcat gcctgaaaaa tcatgaaaat ccaatatatt
     7741 gcagtggtgt aggcatgata agacgcgcca gcgtcgcatc aggcaaagac aaatctcgcc
     7801 tgacttacct tcttcttccc cccagcaaac tccccaacat cccacgtaca atctgattcg
     7861 tcacctggcg ggcggcgctt ttcgccattg tttgcaccac accatctttc ttcccgccgc
     7921 gtggtccggt agtgccaaac aaaatatcct tcaatccacc aagaataccg tcatccaccg
     7981 ccaccgcttt ccctttcgcg ggaggattat tttgctgctt ggtactggcc tgaaagcctt
     8041 tttgcaacat ctcataggcg gattcccggt ccacgtcatc ctcgtacttg ccatacaccg
     8101 gggagtggtt aatcaagcca ttgcgctcat cttccgtcac cggtcccatc cgcgaacaag
     8161 gcgcaatcac catcgcccgt tccaccacag aaggacttcc ttttgcatcg agaaacgaga
     8221 ttaacgcctc gccggtcccc agttcctgga ttgccttttc ggtatcaaac gccggattgg
     8281 cccgcatggt ttgcgccgca gcttttaccg ctttctgatc tttgggcgta aaagcccgca
     8341 aagcgtgttg aacgcgatta ccgagctgcc cgagcacatt atccggaata tcagacgggt
     8401 tttgcgaaac gaaccagacg cccacgcctt ttgagcgaat aagccttatt acctgctcaa
     8461 tcttatccag cagtacctgc ggtgcatcgt taaacagcag atgtgcctcg tcgaagaaaa
     8521 acaccagttt tggtttctcc agatcgcccg cttccggcaa ttgttcatac aactctgaaa
     8581 gcatccacag caggctggcg gcgtacagtt tcggcatctg ataaagcttc tcggcgctga
     8641 ggatattgat aacgccttta ccgttggtat cggtgcgcat ccagtctttg atatccagca
     8701 tcggctcgcc aaagaaatgc gccgcacctt gcttttccag cgacagtaaa ccgcgctgga
     8761 tggcaccaac cgatgcgcta ctgatattac cgtactgatt ctggaaagat ttggcgttat
     8821 cgccgatgta ctgggtaatc gcccgcagat ctttaaagtc gagcagcaac aatccctgat
     8881 cgtcagcaat acggaagatg atattcagca cgccagattg cacatcgttg agattcaaca
     8941 gccgcgccag caacagcggc cccaggtctg aaaccgtcgc ccgcaccgga tggcctttct
     9001 cgccaaagat atcccacacc accaccggat tagcatgcgg ttgccagtca ttgacgccga
     9061 tatttttaag ccttgtgagc agtttttccg acgccgttcc tgcctgcgcg ataccggtca
     9121 gatcgccttt cacatcagcc ataaacaccg gcacgccgat ttccgacaat gactctgcca
     9181 gtttttgcag cgtaacggtt ttacccgtcc ccgttgcgcc agtaatcagc ccgtgacggt
     9241 tagccattcc cggcagtaaa aaaagttctg tgtccggcgt gcgggcaatt aataggggtt
     9301 cgctcatgag atttcctcca gtttcctgcc tggagtatag gcaacggctg cgcactcttc
     9361 accgctaaat tcagcagatt gcgagacgcc ttccaaagag atttaagtgc cgggcgacag
     9421 gcacccggca aagggatcag aagtcggctt tcagaaccac gcggtaacgc gccttaccgt
     9481 cgcgcacatg cttgatggca tcgttaattt tcgacatcgg gaacagttcg gtggtcggcg
     9541 caaccttgct acgggcggca aagcgcatca gctttcgcag ctcataaggc gtgccggtag
     9601 cagaaccaga gatgctgcgg tcgcccgcaa ttaacgtaaa ggccggaaca gacagcggcg
     9661 tgagaaccgc accgaccgta tggaaattac cgccataggt cagcgcctca aaataaggct
     9721 gccagtcgag gctgacgttc acagtattga taatgagatc aaactgcccc gacagggctt
     9781 tcagtgcctg cggatcgcgg ctattcacca ctttatcggc acccatcgcc agtacttcct
     9841 gctctttcgc cggattagaa ctaaaggccg tcacctcgca tcccattgcg tgcagaagtt
     9901 ttatagcgat atgccccagc ccgccaatac caattacccc aacgcggctg gtagcagtga
     9961 tatggtgcat caacagtggt ttaaagaccg tgataccgcc gcacaacagc ggcccggcgg
    10021 actcgatatc aatattttct ggcagtggaa tcacccattg ccagtccgca cgcaacttct
    10081 cggcaaagcc accgcgattc ataatcgtcg gcaccgcacc ttgctcgcag ttgatctgat
    10141 taccgctaat acaggcgtcg cagtgaccac agctacgcgc cgtccagcca atcccgacac
    10201 gctgaccgac ctgcaaacct ttatcctgcg cggcgctccc gagtgccacc acgcgcccaa
    10261 tcacctcatg cccggcaacc agcggatatt gtgaaaatcc ccattcattg tcgatcatcg
    10321 atagatcgga atggcagatc ccgcaataat ccacctgcac ttcaacatct tgtggcctca
    10381 gctcaccggg atcgtactca taaacttcca gttcgccgcc cgcttctttt gcggcatagc
    10441 tttttatcat cgacattttt tggtccttct ctggtgttgt ttgggaagtg tagagcatgg
    10501 cagggcgggg tgcctggagt gtgacaaagg ttacacatcg ctgtgtgcaa tgctgaaaat
    10561 ttcagcactt agcgaggtgc gagcaagctg gcgcttgcat ggtggcgtgc gacaggtata
    10621 atccacaacg ttttccgcat acctcttcag tgccgaagtg gcgaaatcgg tagacgcagt
    10681 tgattcaaaa tcaaccgtag aaatacgtgc cggttcgagt ccggccttcg gcaccattct
    10741 tacttccaag accatccgag aaagtccaaa tatcccttta aaatcaatgc ttgcagcgat
    10801 tttttcgtcc tgcgtcttcc gaggttgtcc gttgaaatcc ggatatcatt gggggcataa
    10861 ttgggggcat cttaacttcg attagaaatg tgcccccaaa tgaagctcaa cgccagacag
    10921 gtcgagaccg caaagccaaa agacaaaacc tacaaaatgg ccgatggtgg tggtttgtat
    10981 cttgaggttt cggccaaagg ttccaaatac tggcgcatga aatacagacg tccctctgac
    11041 aaaaaagagg atcgtctcgc gtttggtgtt tggcctactg tgacgcttgc tcaggcaaga
    11101 gcaaagcgcg atcaagctaa aaagctgtta gcgcagggca ttgatccaaa agccgaatag
    11161 aaagaagctc aggccgagaa ttcgggggca tattctttcg aaactatcgc tcgtgaatgg
    11221 catgctagta ataagcgctg gagtgaagat caccgatcac gcgttctacg ttatcttgag
    11281 ctttatatct ttcctcatat tggttcatct gacatccgtc agctcaaaac tagccaccta
    11341 ttagccccga ttaaaaaagt tgatgccagt ggtaagcatg acgttgcaca gcgccttcag
    11401 cagcgtgtca cggctattat gcgttatgca gtacagaacg attacatcga ctcaaatcca
    11461 gccagtgata tggccggtgc gctatcgaca accaaagcgc gacattaccc cgctttgccc
    11521 tccagccggt tccctgagtt tcttgctcgt cttgctgcat atcgtggccg tgtaatgacg
    11581 cggatcgcgg ttgagctttc cttactaact tttgtgcgtt ccagtgagtt acgtttcgcg
    11641 cgttgggatg agttcgactt cgataaatct ctctggcgag tacctgcaaa acgagaagaa
    11701 attaaaggtg tgcgttactc gtaccgtggc atgaagatga aagaggagca tatcgttcag
    11761 cttagtcggc aggcgatgat tttgctaaac cagttaaagc agattagtgg agataaagag
    11821 ctgctttttc cgggtgatca tgacgcaact aaggttatga gcgaaaacac ggtaaatagc
    11881 gcattgcgtg cgatgggcta tgacacgaaa accgaagttt gcgggcacgg gtttagaacg
    11941 atggcccgtg gtgcgttggg cgagtccgga ttatggagtg aagatgctat agaacgacag
    12001 ttgagccatt cagagcgtaa taatgtacgt gctgcttata ttcacacctc tgaacatttg
    12061 gatgaacgtc gattgatggt tcaatggtgg gctgattatc tccaagcaaa taagggcaaa
    12121 acaataacac cttatgattt tgctaaaata aacaaaagtc gatagtgaaa ataaacgcct
    12181 ataatatata ggcgtttatt tctgtattaa acactttgat cataatcttc cagcagcaac
    12241 tttttttcgt acttcatctt tccaattgcc actatggatt attctatcga aattacttcc
    12301 tgctcttcct gataataagt caattcgaga tagcttgctg atatcatccc agttatcata
    12361 gaggatatat atagcattac catattctat gttttcaaat acaaccaaat cgtcctccag
    12421 catagctcca atataattac tgaacgtgct gtttcctgtg acgatttttt taggttcaag
    12481 actcatgaag aagtcatatc tattttcagc gacatttttc ttgtcggaag tgatattttt
    12541 acctctaaaa attcttgcta aagtttcttc tttactacct ggtggaaata tttcccatga
    12601 gactataagt gtatcagcat aagtcgatat gggtttatca gcatcctcaa ttccacattt
    12661 accaagattt tcttgaagaa gatttaaatc aaataataat tcatcatcaa acttatttga
    12721 ttgtttgtct aaaattctag ttactctgaa gttaaatatg aaatggctgt ccgagggctg
    12781 tttgtgatta atttcaatgg ctatgagtgt tggtggtata atgtctctgg gatatttctc
    12841 gtaaggtaat ctaacagtat gtgtaccatt agagctatca ccccagttag gtgactcaat
    12901 ttcagtgtaa tgagtttctt ttgggaggtc ttttctgaca atttcttcac caaaaacatt
    12961 tttaagtgaa tatttaccct gcaatggatc tggtatgacc gacgtctcat aagcattaac
    13021 accattatca aaatatattc caaggtgctc taatgctcca ctttttaatt ggttttccgt
    13081 aaatgcaata gaagtgccag caacaactgt attaccaagc cttcttaact tgctatgaat
    13141 atttttaggt ataacacgta tattcttttt catttttccc tcatacttga tcatcaatgt
    13201 ctctttgctc tcgcttgtta tgtaaatcat tgataaacat aacatttgca agtattacgc
    13261 taattactgc ctcaatctgc atgtacgaaa tagcaataat taatgctaaa gatgtgtttt
    13321 ttattacatc ttggctctct aaataaagat gacttttgaa aaacactagt ttaactaagt
    13381 atacaacaag taaagtaatc ataacgaaag atgattttag aacacttcca actattgctt
    13441 ctaatcttct tgtatcttcc agttgttcgg tgaaatcaac ggtttctata gttttggggt
    13501 tcacaatacg ctgcaaagca tttgggtaaa gaaacgctaa ccaaattccc ataatagtaa
    13561 aaaccattcc agaaactgat acgagaagag tgcaatagtt ggcaaaatcg ttatacacat
    13621 agttaatatc ggatgacgaa ataatcatca gcgatataat gaatatcgcc atgtatatcc
    13681 atgtgtattt ggctatgcct gctatagctt tcaatattca atcctctcca gatgctttct
    13741 ttattcttgg ttgagattgt aatgctttta attcttttaa tataggggaa ataaattctt
    13801 ttcttttgtg tgatatttgt tcgtaaatat atgcggcgga atatgttgaa tagtcgtcag
    13861 aagggacatt gagaatatca cgcattctat atttatccac ccaagttata cccttgtctg
    13921 tagcaaatcc aacattgtcc caaagacgtt tttctctatc ctcagccgaa tacttttcaa
    13981 tgatttcttg aacttcattc aaggatggtt ttgcttctgc ttttatttca atttgtcttg
    14041 ttttggcatt tttctttccg gacacaaatg gaacgagagt gctaaaggtc tttaaccaat
    14101 cagctcgtgc atcatttgga tttataataa tagtttccct gcgaactatg tgtgttattt
    14161 ttggtattag tttacctaac tcagtatgag tggtttctaa gcttctgagc ttcatatcaa
    14221 acctgtacat atatttatat aagtcttcgt catcggtatt agatagcctt atataacctt
    14281 tctcggtttt atttttaacc cttttgctat gtttaactct attagtaata gatgagtgta
    14341 catagtcttg aaatagttca gaatcacaaa cagaatggtc gaatttaatg gatactatag
    14401 tttcaagttc aggtataacc caataaaagc atggccgccc ccagataact tttttccctc
    14461 tgtagctatt agtatattta accaccgatg agcttccgat ttcaccgtct tcactagctc
    14521 ctaataaaga gcccgtacta tcagtatcag atttccataa catgactaag aaatcaccag
    14581 tattttcatc cttataaata tccttgcaat aacactttga actgtttggt ttttcttttg
    14641 gatcccatgg tatcgtgagt gcaagagatt tagttcccac ccaatcctgt atgaggtcaa
    14701 atgtttcgct aagttctaaa ccataggtat tgtcatcatt taccttgtat aaaccgcact
    14761 tattaacctt gaagaaattg agatgcccta cattcatgct ctttccttag cttcttatct
    14821 tgggatatgt atcatgttca aaaattaagc ataaccccat tgacttcgtg cgggcaatgt
    14881 tttcacccta gaatttgatc ggtttaacgt taaatattca taagttacat gagcattttt
    14941 cacttcttcc caattacaga cgtcatgagc tgaatattaa taaaataatt atcctcacgg
    15001 catggcgcgc aatgctctcc ccgccacgcc cgcccgcttt gcagggcggt tttaatgcag
    15061 ttgcacagtc acgctcaggc tgcgccggga atggcgcggt ctgcagaaaa tgaggcagga
    15121 aaacgcatgc aaagccatgc accttatcga tgcatggctt ttttcagtaa aaacgggcgg
    15181 attttcgggg aattttacac agactgacgt gatgccagtt gcgcactttt acgcgaaaaa
    15241 atcatgttct gcgcaggggt gaatttttca cggctgtcat ccaccgaagt cgcgtcaggc
    15301 ctgaatccga tggtcgttaa aatgtcacta tcctgtgcgg aataattaat tttttccccc
    15361 ttcgcaagcc aggacagaag ggcttcacgc agggcatctg tggcacgctg tatggcacag
    15421 tttcgggcaa tggccgtcag ctcactgtag cccatcagct ccggtgccag tgccgccgcc
    15481 agtgctgtgc cgtgctgctg cataaaatca ttcagccggt cgcggatgct gatgtgctga
    15541 acggcttcat gcgaacgaat ataacgaccg gcagcctgat tcacctgcca ttttctgact
    15601 tcgataatat tgcgtaattc gtccaggcga ctgacgtttc tgccttcccc ggacagaagc
    15661 cgcagatatt cctgttcggc cgcagccagc tcatttttgc gttgcagcca tgctgctttg
    15721 ttattctgac aggtgtcaaa gacctgctgt aaggctgtgc tttccatcgt tatctctttc
    15781 tcatcatgct gaagaataaa aatacggtgt gcggcgacgg ccggtgttaa ccggcagccc
    15841 tcattccaga cgcagcgaat atgattgtgt ttttaagcgt actggcggca gttcctgttt
    15901 ttcatgcagg ctttctgcca gttcgtccgg cgtgaccggg cggacaataa aacggttgat
    15961 ggtctgaagc gttttaaaca ccagaccaca gcccggatcc gtgcacacat aaaaacgctc
    16021 ggtgacttcc tgagacagac gccgcgatgt tcttgacagt gcaaggcctt tacatctccg
    16081 acaacaatat ccggtaacaa gcattctttt cgggcgtttc atactgccgg aggctgacgt
    16141 cagtgaatcg cggtatctct gtttgcctga aatgtattcc attcctgaat ctttacagtc
    16201 agagaaaaag ctttcactcg cttcaaatgt cgcagagcaa taaatattcc ggcactgtgc
    16261 aatcattatc ttggtgccat cgtccatgaa atgtgcgcga cgggtgtgag caacatgtcc
    16321 acacgacggg cagtaaatca tgacagcagt cctctggcct taagctctgc tccctgctgg
    16381 tctattttgt cctgccacac cttgcgctgt gccggtgtgc ctgccacctc ataatccatg
    16441 tgcgggagtg ttgccgctga cagtccggtc agccggagaa ccggctcgcc ggtgaggctg
    16501 atttgcatct gtttaatttt ctgttccagc gatgatttca cctgctgcat gacagccttt
    16561 tccggtgcga cgtagccctg atggccggtg gtgttggcga gcggattttc ctgtaccagg
    16621 atactcagat gcattgcccg gacaagcgcc tcacaggttt cattcagggc gtgttccagc
    16681 tcatgctctg catacagact cagcaggtga tgatgtgcct tccggtaggc ggtggccgtg
    16741 ctgtcacacg cccctttcag gcgttcacgt tcaaaattca gcaccacggc cagattgtca
    16801 tattcctgta ccagctcccg gcgtgccacg cgctcaatgt ggcgctgttt cagctcgtcg
    16861 ctcaggacac caccggctgc acgaaaggcc gtgcgccagt cgtcagcgtc atttccgtcg
    16921 gcctgcgcca gcgcattttt ttcctgctct gcccgttcaa tggccgtgac ggtctcatcc
    16981 atcaggcggg cgttctcaag gtgggcggct ctggcctttt ccagttgtgc cagtgcgggt
    17041 tgcagatatt cagggatggt gttgtcagac attttccggc tcctcgtcac ttcaggttaa
    17101 gaaaattgtg acgtacaccg gacaacaaca cgacgcattg cagatgtgcc agccctgaca
    17161 caggagactc atcctcagac cggcaagcca ggaaaaggtc gcaggaaaaa ccggcttact
    17221 gtttgttttt ttatatttta ctgttcacct ctgttcacca taagaaaaaa gataagtaat
    17281 acagtaagtt aaagggtgaa caatcgcagt aatgactgtt caccgtctgt tcaccactgt
    17341 tcacccgctc atagactttt tgtgctgttt attacttttt atttttatta atccactgaa
    17401 ataaataaga aaaaacaatt tgtatttcac tataattttt tccagctcct tccagagcgt
    17461 tttaaagcca tctggcgctg atgtataaaa aatacacagc cattgtaaga ctgccggaac
    17521 aaatcccccc tgttgcatct gccaaaaata ttcacaaaat aaagcgctac ccgaagccgg
    17581 acggacttat ccggtgctgt atggacatta acgaggtagc ccgatgcaag ctgttttttc
    17641 ttccccgtct cccgcccctg tgacgccact gatgccgctg ccggacatca cgcaggagcg
    17701 ttttttacgt ctgccggaag tgatgcacct gtgcggcctg tcacgctcga ccatctatga
    17761 actcatccgt aagggggaat ttccgccgca ggtgagtctt ggcggtaaaa atgtggcctg
    17821 gctgcactct gaagtcaccg catggatggc cggacgcatt gccggacgca aacgggggta
    17881 cgacgcatga tgatgcccgc tctgcaaaaa ctcccttttt ctggcttgcc tttttccggc
    17941 atttgcggat atagtttttc cgctgccgca aaatcggcag ccgggcgtga gaacccgagc
    18001 aattcacagg cgacatatga cgcgccacgc gtcttttttt gtgtcgcaat caatgccaca
    18061 gagcgccaga ttatggtgtg gtgtgtggtc agtcgtgcag atggcattcc gtgcatcctg
    18121 cccgcgtccg ctcattatgc cgcagagtca atggtagctc aggcggggca gcctccgggc
    18181 tggccggtat cctgtgaagc cggtattctc acccccgtct gggctatcgc catcgagcgt
    18241 gagaactccg gcgatagcgt tatttgctat tcacaggagg ctgccatcat ggctacaacc
    18301 cttaccccct cacaccctga atttgtcttt gtgtttgcgg ctgtccgtcg cgcagaccgt
    18361 catccccgta tctgtatgct tcgcaccgtg gccggtgatg aacgcagtgc ccgccgttcc
    18421 cttgtccgtg actatgtgct ctcccttgct gcccgtctgc cggtggtgga ggtgtcccgt
    18481 gcgtaataaa aaagcccctc agaccgtctc agcacgtcat gacgcccgtg aacacctcag
    18541 cattgaggct taccataagc tcaaccgcgc cagcgccgta tcccagtttg ttgggggtga
    18601 tttgattcac cgtgaactct ccggcctgca tcagctctac attccgcata ttttcagcta
    18661 cctgaatgaa gatattgatt ttgtgctgaa tgagctgaaa gccaaaggcc tgtgccgcga
    18721 ttttctcgcc cagcagaaag accggggaga caggacgcat gtttgatttt ccccagcccg
    18781 gtgagattta ccgttctgcc ggttttcccg atgtggccgt ggtcggcatt ctggaagacg
    18841 gtattccgtg ggaaatgccg taccgctgcc cggacattgt ctggaacccg taccgccgta
    18901 aattcagtat ccttgtgcgt atcctcgccg acgggcgcac cacagacatc ccgctggggc
    18961 gttttctgcg ggaatttacc tgtgaccgtc ctgacctgtt taaacgcagc cccgtaaacc
    19021 ggcatgcggt actgaaagaa atggccggag acccggaatt acagaaatgg cgggagaaat
    19081 atctggatat ttacccgcag gacactgttc cggtcagccg ggcagcaccg gtagcgcggg
    19141 aatggcggga aattccccgc acggagcctg acccggaaat caccccggat aacagttacc
    19201 gcaattatct gtaattaaaa aacgacaccc gaaaaattaa atgtgcgtat tcgcgcaggg
    19261 atacgcacgt cttcaggaga cgcagatatg ccttatcagt taatgcaacc ggcacggaat
    19321 gcagtcatct gtcacaggga ggaaagcaaa tgaaaacacc cttaccgccc gtcttacgcg
    19381 cagcccttta ccgtcgtgct gtcgcctgtg cctggctgac cgtgtgcgaa cgtcagcacc
    19441 gctacccgca tctcaccctt gagtcactgg aggcggccat cgccgctgag ctggaaggct
    19501 tttatctgcg ccagcacggt gaggaaaaag ggcgtcagat agcctgtgcc ctgctggaag
    19561 atttaatgga atccggcccc ctgaaggccg caccgtcgct gtcctttctc gggctggttg
    19621 tgatggatga actctgtgcc cgtcacataa aagcgccggt actgcactga aggagaacaa
    19681 caccatgaaa atgaacgtaa ccgccaccgt cagccatgcg ctcggccact ggccgcgtat
    19741 tctcccggcg ctggggattc aggtgctgaa gaaccatcat cagccctgtc cggtctgtgg
    19801 cgggagtgac cgcttccgtt ttgatgacag ggaggggcgc ggcacctggt actgcaatca
    19861 gtgtggtgcc ggtgacggcc tgaaactggt tgaaaaggtg tttggtgtct ccccgtccga
    19921 cgtggccgca aaggtggctg ccgtgaccgg cagtctgccc ccggctgacc cggcagtgac
    19981 ggccgccgcc gttgctgaaa cagacgctgc ccggaagaac gccgccgcac tggcacaaac
    20041 cctgatggca aaaacccgtc ccggaaccgg taacgcctac ctgacccgca agggctttcc
    20101 cggccgggaa tgccggatgc tgaccggcac acacagagcc ggtggcgtga gctggcgcgc
    20161 cggtgacctt gtggtgccac tgtatgacga cagcggcgaa ctggttaacc ttcaattaat
    20221 cagtgctgac ggccgtaagc gcaccctgaa aggcggacag gtcaggggca cctgtcacac
    20281 ccttgaagga cagaatcagg ccggaaaacg tctgtggata gcggagggat acgcgaccgc
    20341 acttaccgta catcacctga ccggtgaaac ggtgatggtg gcgctttctt ccgtgaacct
    20401 cctttctctg gccagccttg cccggcagaa gcatccggcc tgtcagattg tccttgccgc
    20461 agaccgtgac ctcagcggtg acggccagaa aaaagccgcc gcagccgcag atgcgtgtga
    20521 aggtgttgtt gccctgccgc cggtcttcgg tgactggaat gatgccttca cgcagtacgg
    20581 cggggaggtc acccgtaagg ccatttacga tgccatccgg ccaccggctg aaagcccgtt
    20641 cgacaccatg agcgaagcag agttttccgc catgagtacc agcgaaaagg ccatgcgtat
    20701 ctatgagcat tacggcgagg cgctcgcggt cgatgccaac ggccagcttc tgtcccgcta
    20761 tgaaaatggt gtctggaagg tgctgccgcc actggacttt gcccgggatg tggccgggct
    20821 gtttcagcgt ctgcgcgcgc cgttctcctc cgggaaggtg gcctccgtgg tggacaccct
    20881 gaagctgatt attccgcagc aggaagcccc ctcccgccgc ctgattggct ttcgtaacgg
    20941 tgtgctcgac acacagaacg gcacgttcca cccgcacagt ccgtcacact ggatgcgtac
    21001 cctgtgcgat gtggatttca ccccaccggt ggaaggggaa acgctggaaa cccacgcccc
    21061 cgcgttctgg cgctggcttg accgtgccgc cggtggccgt gcggaaaaac gcgacgtgat
    21121 tctggccgca ctgtttatgg tgctggcaaa ccgctacgac tggcagctct ttctggaggt
    21181 gaccggtccc ggcggcagcg gcaaaagtat catggccgaa atcgccaccc tgctggccgg
    21241 ggaggataac gccacgtcgg ccaccattga gacgctggaa tccccgcgtg aacgtgccgc
    21301 gttaactggc ttctcactga tacgcctgcc ggaccaggaa aaatggagcg gcgacggtgc
    21361 cggactcaag gccatcaccg gcggcgatgc ggtgtccgtg gacccgaaat accgggatgc
    21421 gtactccacg catatcccgg cggtgattct ggccgtgaac aataacccga tgcgcttcac
    21481 cgaccgcagc ggcggcgtgt cacgccggcg ggtgattatt cacttcccgg aacagatagc
    21541 cccgcaggag cgcgacccgc agcttaagga caaaatcacc cgcgagctgg cggtcatcgt
    21601 gcgtcacctg atgcagaagt tcagcgaccc gatgctcgcc cggtcactgc ttcagtccca
    21661 gcagaactca gacgaggcgc tgaacatcaa acgggatgcc gacccgacgt ttgattttat
    21721 cggctatctg gaaaccctgc cgcagaccag cggcatgtat atggggaacg ccagtatcat
    21781 cccgcgtaat taccgtaaat acctctatca cgcctatctg gcctacatgg aggcaaacgg
    21841 ctaccggaat gtactcagtc tgaaaatgtt cgggctgggg ctgccggtga tgctgaagga
    21901 atacggactg aattacgaga agcgccatac caaacagggg atacagacca acctgacact
    21961 gaaagaggaa agctacggcg actggctgcc aaaatgtgac gaccctgcaa caacctgacc
    22021 cacctgaccg gcatctgccg gtcttttttt atcccgacct cccccgaagg tgaacaatcc
    22081 actgttcacc cttcaccgta tattcacccg ttatcacact gaaattaaaa gagaaaaatg
    22141 aaaggtgaac agtgtgaaca atcaaatcaa aaaaaacttt tttctccctg tgcgattttc
    22201 agtacggggg attaatcacc ggtatgagtc acaccggcag aatgccggag gtgaagaatc
    22261 gaatgttcac ccttcaccca ttattcacca cctatcactc tgaaataaaa ggagaaaatt
    22321 aaatggtgaa cagtgtgaac agttctttcg aaaaaaaatt ttttatgtgg ataaaagatg
    22381 cactggtttg gatccgggct acggatccaa acttactgat taaaaattat ttaactttcc
    22441 gatttattga tgggctgaaa atagattggt cagaaaaaca gtgggggcac aaaagggggc
    22501 atatttcatt gttgtgtttt attatttgtt ttttatcatt aacttatttt gatatttgag
    22561 tccggccttc gcaccaaaag tatgtaaata gacctcaact gaggtctttt tttatgcctg
    22621 aaatccgcgc tacacaaggc ttttccagct tttcccctca actgaagtca acctgactca
    22681 acccacatca acaggcttgt gagtatacta atgagtatat ttgccgattc gatattgctt
    22741 gtatactcac gagataccaa tggaaggaag accattatgg ccctaacgga tactaaagtt
    22801 cgctctgcga aacctgagga gaaagagtat tcacttgttg acggcgacgg catgtcctta
    22861 cttgtaaaac ctggcggttc aaagtattgg cgatttcgtt tccgttttgg cggtaaacaa
    22921 catttgatgg cgttcggcgt ttacccggat gtttcgctgg cggatgcgcg gaagaaaagg
    22981 gaagaggcca gaaagctggt agctgctggt atcgatcctc gtgagcataa gcgtgctgtg
    23041 aaagaagagc aggcgaaaga gattattact ttcgagaagg ttgccagaga gtggctcgta
    23101 accaaccaaa aatggtcgga agagcatgct aatcgtgtaa aaaagagcct ggaggacaat
    23161 atcttcccgg caattggttc ccacaatatt gctgaactgg gcacccgcga tctgttaatt
    23221 cctattaaag ccgtggagaa atccggacgt cttgaagtgg cttcccgcct tcaacagcgc
    23281 accacggcca tcatgcgtta tgcagtgcaa agcgggttaa ttgattacaa tccggcgcaa
    23341 gagatggcgg gggcggtagc ttccagtaat cgacagcatc gtccggcgct ggagttaaag
    23401 cgtatcccgg aattactcca gaaaatcgat gaatacaccg gcaggccact aacccgctgg
    23461 gcaaccgaac ttaccctgct tatttttatt cgatccagtg agctgcgttt tgctcgctgg
    23521 tcagaaatcg attttgaaac gtcaatgtgg accatcccgc ctgagcgaga acctattccc
    23581 ggtgtgaaac attctcagcg aggagcaaag atgcgtacac ctcatctggt gccgctttca
    23641 aagcaggcgc tagcgatcct gaagcagata aaacagttct gtggcgaaca tgagctgatt
    23701 tttattggcg atcacgatcc gagtaagccc atgagtgaaa acacggtgaa cagtgcattg
    23761 cgggtgatgg gctatgacac caaggttgag gtttgcggcc acggcttccg cactatggcc
    23821 tgtagctcat tgattgagtc agggttatgg tcgaaggatg cggtggaaag gcagatgagc
    23881 catatggaac gcaattcggt gagggcggcg tatatccata aagcggaaca tctggatgag
    23941 cgcaagctga tgttgcagtg gtgggctgat tttctggatg cgaaccggga gaaggggatt
    24001 acgccgtttg actatgcgaa gatcaatcgg ggtaatggcg agtgagttat ctaaaagcgc
    24061 acattcgcct ctaaattgaa agctgctgac ttattcaaac gaggaattgg tcagcagtgc
    24121 caaatagccg agttttcact aaggtaagcc tttttattga acctaatcgg cagtaatgct
    24181 ccacctaagc ctaaatttaa agtcatgatt acttataaaa ggggagtgga cccttgattg
    24241 agccctacat cgtaacaaag gtacagcaat tcggctacat caggagtgat agtcaattag
    24301 ttaatctaat aattaattga atctaaataa ttaaatttct tacgtaaaat tgaccaattt
    24361 actggtggtg taagccgcaa tatcttaatg taatcagtat aaaggggctt gatttctttt
    24421 aaagatagta tccgtatgaa ttttaagaaa aaactcgaag agcattttaa gcagttcgaa
    24481 gcatccccag tgttatttgt cggctccggt gtgtctcgtc gttatcttgg tgtgccatgt
    24541 tggcaagacc ttttgaagca ttttgctgag gcaattgggg aaaatcatat aaaattaaaa
    24601 acaaaatcta atggtgactt acccgaatat gcacaattat tggtgtctgc atatgctgag
    24661 aaatggtggg atactgaaga aggacaatta gcattaagtg aaaaagaaca ggagaaaact
    24721 ttcattaacg aacagtctcc tttgaagttg tcaatatcta aatatattga gaatgcacat
    24781 aaaaatatta tagataatga tgagttaaaa catga
//
LOCUS       DAJVSY010000050        24755 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.050, whole genome shotgun sequence.
ACCESSION   DAJVSY010000050 DAJVSY010000000
VERSION     DAJVSY010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24755
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.050"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..224)
                     /locus_tag="OQQ19_001809"
     CDS             complement(<1..224)
                     /locus_tag="OQQ19_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2170 family protein"
                     /protein_id="HCS1803466.1"
                     /translation="MTWNLLALATALQTVPEQNIDVTNSENALIIKMNDYGDLQINIL
                     FTSRQMIIETFICPVSSISNPDEFNTFLLR"
     gene            complement(351..1082)
                     /gene="rlmB"
                     /locus_tag="OQQ19_001810"
     CDS             complement(351..1082)
                     /gene="rlmB"
                     /locus_tag="OQQ19_001810"
                     /EC_number="2.1.1.185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HCS1803467.1"
                     /translation="MSEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALE
                     AQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDG
                     VTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRT
                     MRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPM
                     AGSVSSLNVSVATGICLFEAVRQRS"
     gene            complement(1263..3704)
                     /gene="rnr"
                     /locus_tag="OQQ19_001811"
     CDS             complement(1263..3704)
                     /gene="rnr"
                     /locus_tag="OQQ19_001811"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HCS1803468.1"
                     /translation="MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVEL
                     HIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVE
                     GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEA
                     GVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNM
                     GTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDA
                     RDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLP
                     EVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG
                     DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAECRIERIEQT
                     QRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL
                     PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHF
                     TSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRAD
                     EATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY
                     RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTARE
                     KAKKGDAGKKGGKRRLVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIA
                     AATKAKRAAKKKVAE"
     gene            complement(3743..4168)
                     /gene="nsrR"
                     /locus_tag="OQQ19_001812"
     CDS             complement(3743..4168)
                     /gene="nsrR"
                     /locus_tag="OQQ19_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide-sensing transcriptional repressor
                     NsrR"
                     /protein_id="HCS1803469.1"
                     /translation="MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVK
                     IINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLSLVNCSSEFCHITPAC
                     RLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLLLVE"
     gene            complement(4373..5671)
                     /gene="purA"
                     /locus_tag="OQQ19_001813"
     CDS             complement(4373..5671)
                     /gene="purA"
                     /locus_tag="OQQ19_001813"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019842885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HCS1803470.1"
                     /translation="MGNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTL
                     VINGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSE
                     ACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAE
                     KLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDF
                     VMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGA
                     GPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLD
                     VLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGL
                     PQAALNYIKRIEELTGVPIDIISTGPDRTETMILRDPFDA"
     gene            complement(5775..5972)
                     /locus_tag="OQQ19_001814"
     CDS             complement(5775..5972)
                     /locus_tag="OQQ19_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2065 domain-containing protein"
                     /protein_id="HCS1803471.1"
                     /translation="MNSTIWLALALVLVLEGLGPMLYPKAWKKMISAMTNLPDNILRR
                     FGGGLVVAGVVVYYMLRKTIG"
     gene            complement(6054..7058)
                     /gene="hflC"
                     /locus_tag="OQQ19_001815"
     CDS             complement(6054..7058)
                     /gene="hflC"
                     /locus_tag="OQQ19_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HCS1803472.1"
                     /translation="MRKSVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDDNK
                     PLVYEPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSR
                     YYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLEVRDALNSGSA
                     GTEDEVTTPAADNAIAEAAERVTAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTE
                     VSEAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGD
                     AEAAKLFADAFSKDPDFYAFIRSLRAYENSFSGNQDVMVMSPDSDFFRYMKTPTSATR
                     "
     gene            complement(7061..8320)
                     /gene="hflK"
                     /locus_tag="OQQ19_001816"
     CDS             complement(7061..8320)
                     /gene="hflK"
                     /locus_tag="OQQ19_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HCS1803473.1"
                     /translation="MAWNQPGNNGQDRDPWGSSKPGGNSEGNGNKGGRDQGPPDLDDI
                     FRKLSKKLGGLGGGKGTGSGGGSSSQGPRPQLGGRVVTIAAAAIVIIWAASGFYTIKE
                     AERGVVTRFGKFSHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVE
                     MNVQYRVTYPEKYLYSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQR
                     ELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQ
                     PRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEITRERLYIETMEKV
                     LGNTRKVLVNDKGGNLMVLPLDQMLKGGNAPAAKSDNGASNLLRLPPASSSTTSGASN
                     TSSTSQGDIMDQRRANAQRNDYQRQGE"
     gene            complement(8406..9686)
                     /gene="hflX"
                     /locus_tag="OQQ19_001817"
     CDS             complement(8406..9686)
                     /gene="hflX"
                     /locus_tag="OQQ19_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HCS1803474.1"
                     /translation="MFDRYDAGEQAVLVHIYFTKDKDMEDLQEFESLVSSAGVEALQV
                     ITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHALSPAQERNLERLCECRVID
                     RTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQL
                     ETDRRLLRNRIVQIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT
                     EARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ
                     ATLLLHVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEE
                     NKPIRVWLSAQTGAGIPQLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIEKE
                     WMEEDGSVSLQVRMPIVDWRRLCKQEPALIDYLI"
     gene            complement(9763..10071)
                     /gene="hfq"
                     /locus_tag="OQQ19_001818"
     CDS             complement(9763..10071)
                     /gene="hfq"
                     /locus_tag="OQQ19_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HCS1803475.1"
                     /translation="MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVI
                     LLKNTVSQMVYKHAISTVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
                     "
     gene            complement(10157..11107)
                     /gene="miaA"
                     /locus_tag="OQQ19_001819"
     CDS             complement(10157..11107)
                     /gene="miaA"
                     /locus_tag="OQQ19_001819"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HCS1803476.1"
                     /translation="MSDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA
                     LIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRIP
                     LLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARI
                     HPNDPQRLSRALEVFFISGKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIEQRF
                     HQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYLEGEISYDEMVYRGVCATR
                     QLAKRQITWLRGWEGVHWLDSEKPEQARDEVLQVVGAIAG"
     gene            complement(11100..12947)
                     /gene="mutL"
                     /locus_tag="OQQ19_001820"
     CDS             complement(11100..12947)
                     /gene="mutL"
                     /locus_tag="OQQ19_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HCS1803477.1"
                     /translation="MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDI
                     DIERGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASI
                     SSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKF
                     LRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGT
                     AFLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQAC
                     EDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQL
                     ETPLPLDDEPQPAPRSIPENRVAAGRNHFAEPAAREPVAPRYTPAPASGSRPAAPWPN
                     AQPGYQKQQGEVYRQLLQTPAPMQKLKAPEPQEPALAANSQSFGRVLTIVHSDCALLE
                     RDGNISLLALPVAERWLRQVQLTPGEAPVCAQPLLIPLRLKVSGEEKSALEKAQSALA
                     ELGIDFQSDAQHVTIRAVPLPLRQQNLQILIPELIGYLAKQSVFEPGNIAQWIARNLM
                     SEHAQWSMAQAITLLADVERLCPQLVKTPPGGLLQSVDLHPAIKALKDE"
     gene            complement(12957..14294)
                     /gene="amiB"
                     /locus_tag="OQQ19_001821"
     CDS             complement(12957..14294)
                     /gene="amiB"
                     /locus_tag="OQQ19_001821"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiB"
                     /protein_id="HCS1803478.1"
                     /translation="MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFI
                     GDPDYAFSHQSKRTVALDIKQTGVIQGLPLLFSGNNLVKAIRSGTPKDAQTLRLVVDL
                     TENGKTEAVKRQNGSNYTVVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNP
                     FKTESNRTTGVISSNTVTRPAARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNV
                     TIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSIHADAAPNR
                     SATGASVWVLSNRRANSEMASWLEQHEKHSELLGGAGDVLANSQSDPYLSQAVLDLQF
                     GHSQRVGYDVATSMISQLQRIGEIHKRRPEHASLGVLRSPDIPSVLVETGFISNNSEE
                     RLLASDDYQQQLAEAIYKGLRNYFLAHPMQSAPQGATAQTASTVTTPDRTLPN"
     gene            complement(14313..14774)
                     /gene="tsaE"
                     /locus_tag="OQQ19_001822"
     CDS             complement(14313..14774)
                     /gene="tsaE"
                     /locus_tag="OQQ19_001822"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HCS1803479.1"
                     /translation="MMNRVIPLPDEQATLDLGERVAKACDGATVIYLYGDLGAGKTTF
                     SRGFLQALGHQGNVKSPTYTLVEPYTLDNLMVYHFDLYRLADPEELEFMGIRDYFAND
                     AICLVEWPQQGTGVLPDPDVEIHIDYQAQGREARVSAVSSAGELLLARLAG"
     gene            complement(14746..16293)
                     /gene="nnr"
                     /locus_tag="OQQ19_001823"
     CDS             complement(14746..16293)
                     /gene="nnr"
                     /locus_tag="OQQ19_001823"
                     /EC_number="4.2.1.136"
                     /EC_number="5.1.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HCS1803480.1"
                     /translation="MTDHTMKKNPVSIPHTVWYADDIRRGEREAADVLGLTLYELMLR
                     AGEAAFQVCRSAYPDARHWLVLCGHGNNGGDGYVVARLAKAVGIEVTLFAQESDKPLP
                     EEAALAREAWLNAGGEIHASNIVWPESVDLIVDALLGTGLRQAPRESISQLIDHANSH
                     PAPIVAVDIPSGLLAETGATPGAVINADHTITFIALKPGLLTGKARDVTGQLHFDSLG
                     LDSWLAGQETKIQRFSAEQLSHWLKPRRPTSHKGDHGRLVIIGGDHGTAGAIRMTGEA
                     ALRAGAGLVRVLTRSENIAPLLTARPELMVHELTMDSLTESLEWADVVVIGPGLGQQE
                     WGKKALQKVENFRKPMLWDADALNLLAINPDKRHNRVITPHPGEAARLLGCSVAEIES
                     DRLHCAKRLVQRYGGVAVLKGAGTVVAAHPDALGIIDAGNAGMASGGMGDVLSGIIGA
                     LLGQKLSPYDAACAGCVAHGAAADVLAARFGTRGMLATDLFSTLQRIVNPEVTDKNHD
                     ESSNSAP"
     gene            16292..17431
                     /gene="queG"
                     /locus_tag="OQQ19_001824"
     CDS             16292..17431
                     /gene="queG"
                     /locus_tag="OQQ19_001824"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HCS1803481.1"
                     /translation="MSEPLDLNQLAQKIKQWGLELGFQQVGITDTDLSESEPKLQAWL
                     DKQYHGEMDWMARHGMLRARPHELLPGTLRVISVRMNYLPANAAFASTLKNPKLGYVS
                     RYALGRDYHKLLRNRLKKLGEMIQQHCVSLNFRPFVDSAPILERPLAEKAGLGWTGKH
                     SLILNREAGSFFFLGELLVDIPLPVDQPVEEGCGKCVACMTICPTGAIVEPYTVDARR
                     CISYLTIELEGAIPEELRPLMGNRIYGCDDCQPICPWNRYSQLTTEEDFSPRKPLHAP
                     ELIELFAWSEEKFLKVTEGSAIRRIGHLRWLRNIAVALGNAPWDETILTALESRKGEH
                     PLLDEHIAWAIAQQIERRNACIVEVQLPKKQRLVRVIEKGLPRDA"
     gene            complement(17414..17467)
                     /locus_tag="OQQ19_001825"
     CDS             complement(17414..17467)
                     /locus_tag="OQQ19_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803482.1"
                     /translation="MRFYFYSQAVDESGVTR"
     gene            complement(17696..17771)
                     /locus_tag="OQQ19_001826"
     tRNA            complement(17696..17771)
                     /locus_tag="OQQ19_001826"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17736..17738),aa:Gly,seq:gcc)
     gene            complement(17808..17883)
                     /locus_tag="OQQ19_001827"
     tRNA            complement(17808..17883)
                     /locus_tag="OQQ19_001827"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17848..17850),aa:Gly,seq:gcc)
     gene            complement(17920..17995)
                     /locus_tag="OQQ19_001828"
     tRNA            complement(17920..17995)
                     /locus_tag="OQQ19_001828"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17960..17962),aa:Gly,seq:gcc)
     gene            complement(18206..18751)
                     /gene="orn"
                     /locus_tag="OQQ19_001829"
     CDS             complement(18206..18751)
                     /gene="orn"
                     /locus_tag="OQQ19_001829"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HCS1803483.1"
                     /translation="MSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGP
                     TIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKS
                     PICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDSFTKQGTHQA
                     MDDIRESVAELAYYREHFIKL"
     gene            18846..19898
                     /gene="rsgA"
                     /locus_tag="OQQ19_001830"
     CDS             18846..19898
                     /gene="rsgA"
                     /locus_tag="OQQ19_001830"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313167.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit biogenesis GTPase RsgA"
                     /protein_id="HCS1803484.1"
                     /translation="MSKNKLSKGQQRRVNANHQRRLKTSKEKPDYDDNLFGEPDEGIV
                     ISRFGMHADVESADGDVHRCNIRRTIRSLVTGDRVVWRPGKPAAEGVNVKGIVEAVHE
                     RTSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNIIDRYLVACETLQIEPIIVLN
                     KIDLLDDEGMAFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGV
                     GKSSLLNELLGLQKEILTNDVSDNSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLW
                     HLEPEQITQGFVEFHDYLGLCKYRDCKHDTDPGCAIREAVEEGKIAETRFENYHRILE
                     SMAQVKTRKNFSDTDD"
     gene            19995..20963
                     /gene="psd"
                     /locus_tag="OQQ19_001831"
     CDS             19995..20963
                     /gene="psd"
                     /locus_tag="OQQ19_001831"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313166.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HCS1803485.1"
                     /translation="MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKY
                     YKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEED
                     KILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYV
                     PGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTIT
                     PPREGIIKRWTWPAGENDGSVALLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSV
                     TKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKDQV"
     gene            20985..24308
                     /gene="mscM"
                     /locus_tag="OQQ19_001832"
     CDS             20985..24308
                     /gene="mscM"
                     /locus_tag="OQQ19_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="miniconductance mechanosensitive channel MscM"
                     /protein_id="HCS1803486.1"
                     /translation="MRLIITFLMAWCLSWGAYAATAPDSKQITQELEQAKAAKPAQPE
                     VVEALQSALNALEERKGSLERIKQYQQVIDNYPKLSATLRAQLNNMRDEPRSVSPGMS
                     TDALNQEILQVSSQLLDKSRQAQQEQERTREIADSLNQLPQQQTDARRQLNEIERRLG
                     TLTGNTPLNQAQNFALQSDSARLKALVDELELAQLSANNRQELARLRSELAEKESQQL
                     DAYLQALRNQLNSQRQLEAERALESTELLAENSADLPKDIVAQFKINRELSAALNQQA
                     QRMDLVASQQRQAASQTLQVRQALNTLREQSQWLGSSNLLGEALRAQVARLPEMPKPQ
                     QLDTEMAQLRVQRLRYEDLLNKQPLLRQIHQADGQPLTAEQNRILEAQLRTQRELLNS
                     LLQGGDTLLLELTKLKVSNGQLEDALKEVNEATHRYLFWTSDVRPMTIAWPLEIAQDL
                     RRLISLDTFSQLGKASVMMLTSKETILPLFGALILVGCSIYSRRYFTRFLERSAAKVG
                     KVTQDHFWLTLRTLFWSILVASPLPVLWMTLGYGLREAWPYPLAVAIGDGVTATVPLL
                     WVVMICATFARPNGLFIAHFGWPRERVSRGMRYYLMSIGLIVPLIMALMMFDNLDDRE
                     FSGSLGRLCFILICGALAVVTLSLKKAGIPLYLNKEGSGDNITNHMLWNMMIGAPLVA
                     ILASAVGYLATAQALLARLETSVAIWFLLLVVYHVIRRWMLIQRRRLAFDRAKHRRAE
                     MLAQRARGEEEAHHHSSPEGAIEVDESEVDLDAISAQSLRLVRSILMLIALLSVIVLW
                     SEIHSAFGFLENISLWDVTSTVQGVESLEPITLGAVLIAILVFIITTQLVRNLPALLE
                     LAILQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFG
                     LQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNK
                     AFITEQFINWSLSDSVTRVVLTIPAPADANSEEVTEILLTAARRCSLVIDNPAPEVFL
                     VDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGFHAHGIDMPFPPFQMRLESLNG
                     KQTGRTLTSAGKGRQAGSL"
     gene            complement(24459..>24755)
                     /locus_tag="OQQ19_001833"
     CDS             complement(24459..>24755)
                     /locus_tag="OQQ19_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002459969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1803487.1"
                     /translation="LPYLFLALAFPFFKARQDLDRPFVIFKTRMSAMIATVVVVLVVT
                     FANVFTIIPPVVEAGDWDSTLWMIGGPVFFSLLAMAIYQNYCSRMANKPELALD"
BASE COUNT         5698 a         6912 c         6292 g         5853 t
ORIGIN      
        1 tttcttaata agaaggtatt aaattcatct ggattgctga tactacttac cggacaaata
       61 aaggtttcga taatcatttg gcgggaagta aaaagaatat tgatttgcaa atcgccataa
      121 tcattcattt taataattaa tgcgttctcg ctatttgtta catcaatatt ttgttcaggt
      181 acagtttgca gcgccgtcgc cagcgccaac agattccatg tcatatatta ttccatatag
      241 atttagttta aatattaata aaatgaatat ttgcagtacg taattatctt accagctata
      301 gacaaaaaaa aaccatccaa atctggatgg cttttcataa ttcagaggaa ctagctgcgc
      361 tgacgcaccg cttcaaataa gcaaattccg gttgcaaccg aaacgttcag agaagaaaca
      421 cttcctgcca ttgggatgct gatcaactca tcgcaatgtt cacgggtcag gcgacgcata
      481 ccttcacctt ccgcgcccat caccagcgcc aggcgtccgg tcattttgct ctgatagagt
      541 gtatgatccg cctcacctgc cgtaccgacg atccagatat tctcttcctg caacatacgc
      601 atggtacgca ccaggttagt cacccgaatc agcggaacgc tttctgccgc gccacaggcc
      661 acttttttcg ccgtggcgtt gagctgggcg gagcgatctt tcggcacaat caccgcatga
      721 acaccagcgg catctgcgct acgcaggcac gcgccgaggt tatgcggatc ggttacaccg
      781 tcaaggatca gcaggaacgg ctgatcgagc gaagcgatca gatccggcaa atcattttcc
      841 tggtactgac gtcctggctt cacgcgggcg ataatgccct gatgcacggc accgtcgctt
      901 ttctcgtcga gatattggcg gtttgccagc tggataacca cgccctgggc ttcgagggcg
      961 tgaatcagcg gtaacagacg tttatcttca cggcctttta aaataaagac ttcctgaaaa
     1021 cgttcagggg cgcgctccag cagggcctgc actgcgtgga tgccgtaaat catttcgctc
     1081 attaatgtac tcgttgttta cgttttgcct gatgcactac gtttatccgg cctacatgat
     1141 ctctgcaata tattgaattt gcgtgattat gtaggccgga taaggcgttc acgccgcatc
     1201 cggcatgaac aaagcgcatt ttgtcagcaa tctaaccctc ttctgtttga agagggtaat
     1261 gatcactctg ccactttttt cttcgccgca cgcttcgctt tggtcgctgc agctattttc
     1321 tgcgttttcg ccgatggctt tttcgctttt ctcgcgtctt tcttcgctgc tttcggcttc
     1381 gtttttttct caccgcggaa ggcgctgtct ggctcaaagt ttaccttttt accgaccaga
     1441 cgacgcttgc cgcctttttt acctgcatcg ccttttttcg ctttctcgcg cgccgtttta
     1501 ccgacgttgc gcggtgcgcg ttcgctggag atcaggctaa agtcgatttt gcgctcgtcc
     1561 atattaaccg cttcgacgcg aacttccacg cgatcgccca gacgataagt ctggccgctg
     1621 gattcaccca tcagccgttg ccctacctgg tcaaagcgat agtagtcatt gtccagcgaa
     1681 gagacatgga ccagaccatc aatgaataag tcgtccagac ggacaaagaa tccaaagcca
     1741 gtgacgctgg aaattacgcc tttaaagacg ttacctacct ggtcgagcat gaagtcacac
     1801 ttcagccagt cagccacatc gcgcgttgct tcgtcggcac gacgttccgc catcgaacag
     1861 tgctgaccca gttgcagcat ttcttccatc gaataatggt agccgccggt ttcagtggtg
     1921 ttgccctgat gcccctgctc tttcgccagc agatatttaa tggcgcggtg cagcgtcagg
     1981 tctggataac gacgaatcgg cgaagtaaag tgcgcatagg actgcaatgc caggccaaag
     2041 tgaccacggt tttctggatc gtaaatcgcc tgtttcatcg agcgcagcag catggtttgc
     2101 agcatttctg catcaggacg atcggcaacc gactccagca gctccgcgta gtcacgcggt
     2161 tccggcttgt taccgcccgg cagttccagc cccagctccg ccagtactga acggaaagag
     2221 gtaatcgctt cggtgctcgg cttgtcgtga atacggaaca atgctggttc tttggctttc
     2281 tcaacgaaac gcgccgccga gatattcgcc agaatcatgc actcttcaat taacttgtgt
     2341 gcgtcgttac gctgagtctg ttcgatacgc tcaatacggc attcagcgtt gaaaataaac
     2401 ttcgcttctt cgctctcaaa tgagatcccg ccacgttctt cacgggcttt atccagcact
     2461 ttatagaggt tatgcaactc ttcgagatgc ttaaccagcg gagcgtactg ctcgcgcaga
     2521 tcctgatcgc cctgcagaat atgccagact ttggtgtagg tcagacgcgc gtgagagctc
     2581 atcaccgctt cgtagaattt gtagcccgtc aggcggcctt tcgacgaaac cgtcatctcg
     2641 cacaccatac acaggcggtc tacctgcgga ttgagcgagc acagaccgtt agagagcact
     2701 tccggcagca tagggataac ctgcgaaggg aagtacaccg acgtaccacg attacgcgct
     2761 tctctatcca gcggcgttgg cggacgcaca tagtagctga cgtcggcaat cgcgacccat
     2821 aaacgccagc cgccgccgcg ttttttctcg cagtaaaccg catcgtcaaa gtcacgggcg
     2881 tcttcgccat caatggtgac cagcggtaaa tcgcgcaaat cgacacggcc cgcttttgct
     2941 tcttccggca cttcttcttt cagcccggca acctgttgct caacagcctg cggccagatg
     3001 tacggaattt catgggtacg caaagcgata tcaaccgcca tgccggtgcc catattgtcg
     3061 cccagcactt cgacgatttt acccaccgct ttggtacggc gagtcgggcg ttgggtcagt
     3121 tcaacaacca ccacaaagcc catccgcgcg cccatgatct gatcgggcgg gattaagata
     3181 tcgaagctca gacggctatc gtcaggaacc acaaagccga cgcccgcttc ggtaaagtag
     3241 cgaccaacaa tctggctggt ttttggcacc agtacgcgga caatacgcgc ttcacgacga
     3301 cctttacggt cagcacccag cggctgagcc agcacctgat cgccatgaat gcaggttttc
     3361 atctgctcgc tggagagata caaatcatct ttacgccctt caacccgcag aaagccgtag
     3421 ccatcacggt ggccaataac ggtacctttc accaggtcga ggcgttccgg cagcgcatag
     3481 cactgacgac gagtgaagac cagttgacca tcgcgctcca tcgcgcgcag gcggcgacgc
     3541 aggccttcaa gctgctcttc gccttcaatg tgcagttcta ccgccagctc atcacggctg
     3601 gccggttttt cacgtttggt taaatgttcg aggataaatt cccgactagg gatgggattc
     3661 gcgtattttt cagcttcgcg ttcctggaaa ggatcttgtg acatctcggt tcctccgttg
     3721 tcatctctga tgaagatttt cgtcactcca ccagcaataa tttataaagc ggttgattct
     3781 cttcaaccaa atcggcaagc gtgtagttat ccagttccgt aagaaaactt tgcacggcct
     3841 tagaaagcgc ctgtttcaac cgacaggcag gtgtaatgtg gcaaaactca ctgctgcaat
     3901 tcaccagcga taagggctcc agctcgcgca ccacatcacc aatacgtatc gcactcgccg
     3961 gtttacccag gcgaatgccg ccattttttc cacgaacagc agtcacgtag ccggcacgac
     4021 taagttgatt gattattttg accatatgat tacgggagac gccgtagacg tcagtcactt
     4081 cagaaatact ggtcatccgc ccttctggca atgacgccat gtagatcagc gcacgtaatc
     4141 cgtaatcagt gaaactcgtt aactgcacat caacctcaaa agggaaatcg ggaaaaaata
     4201 catttatatt gatgataaac cagccacaag ctgtgtcgct aatttatttc agttcgggga
     4261 aggaaaaaag cgaggattta acactgtgtc ggatagcgta atggcttaac cgacacagca
     4321 atgtatcaca ctgttagccc ggcaggcaaa atatctgcca ggcgtaccag aattacgcgt
     4381 cgaacgggtc gcgcagaatc atagtttcag tacgatccgg accggtagag atgatatcga
     4441 tcggcacacc ggtcagctct tcaatacgct tgatgtagtt cagcgccgcc tgcggcagcc
     4501 cgctacgatc tttcacgccg aaagtggatt cagaccagcc cggcatggtt tcgtaaatcg
     4561 gctctacacc tttccagtcg tcagctgcca gcggagtggt agtcacttcg cgaccatccg
     4621 gcatacggta agccacgcag agtttaacct ctttcaggcc atccagaacg tccagtttag
     4681 tcaggcagaa gccagacagg gagttcagct gtaccgcacg acgaacggca acggtgtcca
     4741 gccagccggt acgacgacga cgacccgtcg ttgcgccgaa ttcgttaccc tgcttgcaga
     4801 ggaactcgcc agtttcatca aacagttcgg tcgggaaagg acctgcaccc acacgagtgg
     4861 agtaagcttt gaggataccc agaacgtaat caacataacg cgggcccagg ccggaaccgg
     4921 tcgccacgcc accagcagtg gtgttggaag aagttacgta cggataagta ccgtggtcga
     4981 tatccagcag cgtaccctgc gcaccttcaa acatgacgaa atcgccacgc tgacgcgcct
     5041 ggtcgagcag gtcagaaacg tcaaccacca tagaagtcag gatgtcggca acagccatcg
     5101 tatcatccag aactttctgg taatcaaccg cttcagcttt gtagtagtta accaactgga
     5161 agttgtgata ttccatcact tctttcagtt tttcagcgaa ggtttctttg tcgaaaaggt
     5221 cgccaacacg cagaccgcga cgtgccactt tatcttcata agcaggcccg ataccacgac
     5281 cggtggtgcc gatcgctttc gcgccacgcg ctttctcacg cgcgttatcc agcgcaacgt
     5341 gataatcaag gatcagcgga catgcttcag acagcagcag acgctcacga acggggatgc
     5401 cacggtcttc cagttctttc atctctttca tcagcgcggc cggagacagc acaacaccgt
     5461 taccgatgat gctggttaca ttctcgcgga gaatacctga tggaataaga tggagaacgg
     5521 ttttttcacc gttgattacg agagtatggc ctgcgttgtg accgccctgg tagcgtacaa
     5581 catatttagc ccgttcagtc agaagatcga cgatcttacc tttaccttcg tcaccccatt
     5641 gggtgcccag tacgacgacg ttgttaccca tttttcaaaa tcaccgtttg cttaaaaatg
     5701 gattctacca tcgctttttc agagttacag cactttttgc actcaaaaat gacctcgatc
     5761 agtctgtttt ttgttcagcc aatcgttttc ctcaacatgt agtagaccac aacgcccgca
     5821 accacaagtc caccgccaaa acgacgtaaa atattatcgg gcaaattggt catcgcagag
     5881 atcatcttct tccatgcctt cgggtaaagc atcggcccta aaccttccag taccaaaacc
     5941 agggcaagcg ccagccagat tgtcgaattc attcattatc cttatagaaa aagaaaacca
     6001 ccgacatccc tgaggatgcg gtggctttat tgacctgtac cgcagtcgtt atattaacgc
     6061 gttgcggaag tcggcgtctt catgtagcgg aagaaatcgc tatccgggct catgaccatc
     6121 acgtcctgat tgccagagaa gctgttctca taagcacgca ggctacggat gaatgcgtag
     6181 aagtccggat ctttactgaa tgcatcagca aacagtttgg ctgcttcggc atcgccttca
     6241 ccacgcatga tgcggccctg acgctcagct tctgccagcg ttctggtcac ttcatagtcg
     6301 gcagtcgcgc gcagtttttc cgcttcttcc tgaccttgtg aacggtgacg acgcgctacc
     6361 gcttcacgct cggcgcgcat acggttgtag atcgcttcag acacttcggt cggcaggttg
     6421 atctgcttga tacgcacatc gacaacttca atacccagcg ccgccatact gttcgggttg
     6481 atgaccggaa ctttgccctt cgtctcagcc gttacgcgct ctgccgcttc ggcaatggcg
     6541 ttatctgctg ccggggtagt aacttcatct tctgtacccg cagaaccgga gttcagcgcg
     6601 tcacgtactt cgagggtcag acgaccacgg gaatcagtga cgatatcttt cacgtccagg
     6661 cgaccaattt cagaacgcag acggtcagag aacttacgtt tcaacagcac ttccgcttgc
     6721 gaaatgtcgc caccacccgt tgccaggtag taacggctga aatcgctgat gcgccatttg
     6781 atgtaagagt cgacgatcag gtctttcttc tctttggtca caaagcggtc ggcctggttg
     6841 tccatggtct gaatacgtgc gtcgagcatt ttcaccgttt caatgaacgg tatcttgaaa
     6901 tgcagacccg gctcataaac cagaggtttg ttgtcatcgt cacgcagtac cttaccaaaa
     6961 cgcagcgtaa taccgcgctc accttctttg acgacaaaga cagacatgta aagcactacc
     7021 agcacgatga tgataatcgc gataactgac ttacgcatcg ttattccccc tgacgctggt
     7081 agtcgttacg ctgcgcgttg gcgcggcgtt ggtccataat atcgccctga ctggtggacg
     7141 acgtgttgct tgctccactg gttgtggagg aagaggctgg cggcaaacgc agcagattgc
     7201 tggcaccgtt atcgctcttc gccgcagggg cgttaccacc tttcagcatc tggtctaacg
     7261 gcagaaccat caggttgcca cctttatcgt taaccagcac tttgcgggtg ttacccaaca
     7321 ctttttccat cgtctcgata tacagacgct cgcgagtaat ttccggcgcg gctttatatt
     7381 ccggcagaag tttagcaaag cgcgccactt caccctgagc ttccaggatg gtctgggcct
     7441 tgtacgcacg cgcctcttcg aggatacgtt gcgcctgacc gttcgcacgc ggctgaactt
     7501 cgttggtata cgcttctgct tcacgaatgt attgctgttc gttttcacgc gcggcaatcg
     7561 catcgtcaaa cgccgctttt acttcttccg gcggacgagc agcctggaag ttgacgtcca
     7621 gcagagtgat gcccatgtca tacggacgaa tcgtctcttc cagttcgcgc tgggtatcgc
     7681 tacgaatcac ggtacgacct tccgtcagaa tgcggtccat ggtgtattta ccgataaccc
     7741 cgcgcagggc gctgtcggta gcctgacgca ggctgtcatc cgggctggtc acgctataca
     7801 gatatttttc cggataggta acgcggtact gcacgttcat ctcaacgcgc actacgttct
     7861 cgtccgacgt cagcatcaca ccggaagcgg ccagttcacg cacggcttcc acgtttaccg
     7921 gtttgacttc gtcgataaac gtcggtttcc agttcagacc cggctcaacc agatggctga
     7981 atttaccaaa gcgtgttacc acgccgcgtt cggcttcttt aatggtatag aaaccactgg
     8041 ccgcccagat aatgacaatc gctgccgctg cgatggtaac gacacgaccg ccaagctgcg
     8101 ggcgcgggcc ttgcgatgaa ctgccaccgc cagatccggt gcctttaccg ccgcccagac
     8161 caccgagctt tttgctcagt ttgcggaaga tatcatctaa atcaggtggc ccttgatcgc
     8221 gaccgccttt gtttccattt ccctcagagt tgccgccagg tttgctgctt ccccacgggt
     8281 cgcggtcttg tccgttatta ccgggctgat tccacgccat gtttgtgctc catatttgtt
     8341 atgcggtgat ccctgttgtc tttcgacgcc agaggatatg actccacgct tcagacgcta
     8401 cgccgttaga tcaggtaatc gatcaacgcc ggttcttgtt tacagaggcg acgccagtca
     8461 acgatcggca tacgaacttg cagacttacg ctgccgtcct cctccatcca ctctttttct
     8521 attgcctgaa gctgataaaa acgacttctc agacgccctt cctgcggtgg cagacgcaat
     8581 gtatgctgcg ccacctcgcc ggaaagccgc tccgtcaaag cctgaaaaag ctgtggtatc
     8641 cccgctccgg tctgtgcgga aagccagaca cggatcggtt tgttctcttc gtcccgatca
     8701 atacgcggtt cgaaatcttc cagcatatcg atcttgttca tcaccagcag ggttgggatc
     8761 tcgtgagcgt cgatctcttc aagaaccgta ttcaccgctt cgatgttttc ttgtacacgc
     8821 acatccgccg catcaatgac gtgcagcagt aatgtggctt gccgcgtctc ttgtaacgtg
     8881 gctttaaatg ccgccaccag atcgtgcggc agatggcgaa taaaccctac ggtatctgca
     8941 agtacggttt caccgacatc cgcgacgtca atacgccgca acgtcgggtc gagggtggca
     9001 aacaactggt ctgccgcgta gacccgcgct tcggtgatgc gattgaaaag ggtagattta
     9061 ccggcgttgg tatatcccac cagcgaaaca gtaggaacgt cggctttgat acgcgattgc
     9121 cgcccctgct cacgctgctt ttcaactctt tccaggcgcg actgtatctg cacgatgcga
     9181 ttacgcaaca aacgacggtc ggtttcgagc tgggtttcac ccggaccacg caaacctatc
     9241 ccgcctttct gtctttcaag gtgggtccag ccacgcacca ggcgcgtagc cagatggcgc
     9301 agctgcgcca gctcaacctg caacttaccc tcatgggtac gcgcacgttg ggcgaaaata
     9361 tctaaaataa ggccggtgcg gtcgatgaca cgacactcgc acaaacgctc caggttacgc
     9421 tcttgcgccg ggctcagggc atggtcaaaa agaacgaccg aagcacccgt cgctttgaca
     9481 gcttccgcaa tttcaactgc tttaccttca cctacaaaat actttgggtg cggcgcttta
     9541 cggctaccgg taatcacctg caatgcttcg acaccggcgg aagaaaccag agattcaaac
     9601 tcctggaggt cttccatatc tttgtctttc gtaaaataga tgtgtaccag taccgcctgc
     9661 tcaccagcat cataacggtc aaacaagcgt ataaccctct aaatagatca gcggggaacg
     9721 caggatcgct ggctccccgt gtaaaaaaaa cagcccgaaa ccttattcgg tttcttcgct
     9781 gtcctgttgc gcggaagtat tctgcgcgct gctaccatga tggtagttac tgctggtacc
     9841 gccaccggcg ttgttactgt gatgagaaac cggacgagac gggacaacag tagaaatcgc
     9901 gtgcttgtaa accatctggc tgaccgtgtt tttcaacagg atcacgaact gatcaaaaga
     9961 ctcgatttgc ccttgcagct taataccatt caccaaataa atagaaactg gaacacgttc
    10021 ccgacgcagt gcgttcagga acggatcttg taaagattgc cccttagcca ttctctcttt
    10081 tccttatatg cttatttgta ctttgaacct ttcgattctg aaaaaattgc gcacgatacg
    10141 tctcaattgt acacattcag cctgcgatag caccaacaac ctgtaatact tcgtcacgcg
    10201 cctgttctgg tttttcactg tcaagccagt gaaccccttc ccaaccacgc agccaggtta
    10261 tctgccgctt cgccaactgt ctcgtggcgc aaacacctcg ataaaccatt tcatcgtatg
    10321 agatttcgcc ttcaaggtaa gaccacatct ggcgataacc cacgcaacga atggaaggca
    10381 agtccgtatg caaatctcct cgggcaaaaa gcgcccggac ttctgcttca aaacctgaag
    10441 ccaacatctg atgaaaacgc tgctcaatgc gttgatggag cagttcacgg ctcgccgggg
    10501 cgatggcgaa ctgatgcacc tgatacggta gagcgtctcc tgacgtttgc gtcagttccg
    10561 ttaaagtttt acccgaaatg aaaaaaactt ccagtgcccg ggaaagcctt tgtggatcat
    10621 ttggatgaat ccttgctgcc gcaaccggat ctacctcctg aagttgacga tgcaatgact
    10681 cccaaccttg ctctgccgcc tgttgctcaa ttctggcccg cacttccggg tctgccgacg
    10741 gtagcggcga caacccttcc agcaatgcct tgaaatacaa catcgtaccg cccactaaca
    10801 gtgggatccg ccccgccgcg gtgatatcgg ccatttccgc cagcgcatcg cggcgaaaat
    10861 cagcagccga gtaagcctgc gacggatcgc gaatatccag caatcggtgc ggcgcggcga
    10921 gtaactcttc agcgttcggc ttcgccgtcc cgatatccat ccctttgtaa ataagggcag
    10981 aatcaacgct tatcaactct actggtaaaa ttttacgcag ctcaatggct aacgccgttt
    11041 taccggaggc cgtcggcccc atcaaaaaaa tcgccttagg caggctcgcc ttactgatat
    11101 cactcatctt tcagggcttt tatcgccgga tgtaaatcaa cagattgtaa cagaccaccc
    11161 ggcggcgttt tcacaagttg cggacataac cgttccacgt ccgccagcag ggttatggcc
    11221 tgtgccattg accactgcgc atgttcgctc atcagatttc gtgcaatcca ctgcgcaata
    11281 ttgccaggtt cgaatacgga ctgcttcgcc aggtagccta tcagttcagg aatcaagatt
    11341 tgtaaatttt gttggcgtaa gggtaaaggc acggccctga tggtcacatg ctgtgcatct
    11401 gactggaaat caatacccaa ttccgccagg gcagactgcg ctttttctaa tgccgatttt
    11461 tcttcgccag aaacttttag ccgcaacgga ataagcagcg gctgagcgca aactggcgct
    11521 tcacccgggg tcagttgtac ctgacgcagc caacgttctg ccactggcaa ggctaaaagt
    11581 gaaatgttgc cgtcgcgctc cagcaacgca cagtcggaat ggacgatagt cagtacccga
    11641 ccaaaactct gactgttcgc cgcaagtgca ggttcctgcg gttccggcgc ttttaatttt
    11701 tgcatcggcg cgggcgtttg caaaagctgg cgatacactt caccttgctg tttctggtag
    11761 cctggctgcg cattcggcca aggggcagcc ggacgactgc ctgatgctgg cgcaggagtg
    11821 tagcgcggag ctaccggctc acgagctgcc ggttctgcaa agtgattgcg ccccgccgcc
    11881 acgcggtttt ccggaatgga acgcggtgca ggttggggtt catcgtccag cggtagcggc
    11941 gtttccagtt gctgttgtag cacgctcagc acgccctgat agataaaatc atgcaccaga
    12001 cgcgactgat ggaaacgcac ttcgtgtttg gcggggtgca cgttgacgtc cacctgatgc
    12061 ggatcgatct ccagatacag cacaaatgcc ggttgctgat cggcccccag tttgtcttcg
    12121 caggcctggc ggatcgcgtg attgatcagg cgatcgcgca tcatgcgacc gttcacgtag
    12181 caatactgaa tttctgccag tgcgggcgtg gtgtgatttg gatcggccac ccagccgcgt
    12241 agcgtgagat cgccgtgttg ccattcaatc gccagcgctt gttcaagaaa agcggtgccg
    12301 caaatcgcgc ctaagcgccg ttctttttgc ccgccttccg gcactgcgcg gtactgacgc
    12361 acaattttac cgttatgcga caggttgatc gtgacgtcga aacgcgccag cgcaatgcgg
    12421 cggatgatct catcaatgtg gttaaattcg gttttctcgg tgcgcaggaa tttgcgccgc
    12481 gccggggtgt tgtagaacag atccagcacc tccagcgtcg tccccacagg atgcgccgcc
    12541 ggttttaccg tcacgttcat atcgcgccct tcggcatagg cctgccaggc ttcctgctgt
    12601 tctgcggtgc gtgaagtgag cgtcaggcgg gaaaccgaac tgatactcgc cagcgcctca
    12661 ccgcgaaagc ccaggctgat aatggcttcg agatcgtcca gagaggcgat tttactggtg
    12721 gcatgacgag ccagcgccag cgccagctca tcttttttga taccgcagcc gttatcacga
    12781 atgcggataa gtttcgcccc accgcgttcg atatcaatat cgatacgcgt cgcacctgca
    12841 tcgaggctgt tttccaccag ttctttgact accgacgcag gtcgctcgac cacctcacct
    12901 gcggcaatct ggttcgccag ttgtggcggt aagacctgaa ttggcatcaa tcgtccttag
    12961 tttggcagcg tgcgatctgg cgtcgtcacc gtactggccg tttgtgccgt tgcaccctgc
    13021 ggcgcagatt gcatcggatg cgcaaggaaa taattgcgca ggcctttgta aatggcttct
    13081 gccagctgtt gttggtaatc gtcgctcgcc agcaaacgtt cttcgctgtt gttgctgata
    13141 aaaccggttt cgaccagtac tgacgggata tccggcgaac gcagaacgcc gagactcgcg
    13201 tgttctggtc ggcgtttatg tatttcgcca atgcgttgca actgactgat catactggtc
    13261 gctacatcat accctacccg ctgggaatga ccgaactgta aatccagcac cgcctggctt
    13321 aaatagggat cagactgact gttcgccagc acatcgcccg ccccacccag cagctccgaa
    13381 tgtttctcgt gctgctccag ccagctggcc atttcgctgt tggcgcgacg gttagagagc
    13441 acccatacgg aagcgccagt cgcactgcgg ttcggtgcgg catcagcgtg aatcgacacg
    13501 aggaaattag cgttttgctt acgtgccaca tcgctgcgcc ccatcaccga aataaagtaa
    13561 tccccgtcac gggttaaaac gcctttaaac atcggatcgt cattgagcaa agtacgcaat
    13621 ttacgcgcga tggcgatggt gacatttttc tcccgcgtac caccggggcc gatagcgcca
    13681 gggtcctgac cgccgtgtcc ggcatcaata gcgatgataa ttttatcgcc agtgttagcc
    13741 gtcgcgcgcg ctgccggacg cgttaccgta ttactgctga taacacccgt agtgcggtta
    13801 ctttccgttt taaacggatt gcgcgccggt tcgctgacgc gcggtgcgac aaccgcaggc
    13861 gtttcaacgc gtttcgcaac cacgggcggc ggaggaggcg gtggcggcac atcggcgtta
    13921 atcgtaaaga cgacagtgta attgctgcca ttctgccgct tcaccgcttc ggttttacca
    13981 ttttcggtaa gatcgaccac cagccgtagc gtttgtgcat ctttaggcgt tccagagcga
    14041 atcgccttca ccagattatt gccgctgaac aacaacggca gtccctgaat cacgcccgtt
    14101 tgtttgatat cgagcgccac ggtgcgtttg ctttgatggc taaacgcata atcaggatcg
    14161 ccaataaaac tcaacgttat ccgcgcctgt tgattaccgt tagaaacctg aatatcagag
    14221 agcgtcgcgg cacccaccgg cgtgcacagc agcagcagcg tcgctaccaa ccaatttctg
    14281 atgcgataca tcatcccgcc acctttcaaa ggttaaccgg ctaaacgcgc cagcaacaat
    14341 tcacccgcag aggaaaccgc actcacgcgc gcctcacggc cttgtgcctg ataatcaatg
    14401 tgtatttcga catccgggtc aggaagaaca cctgtacctt gttgtggcca ctccaccagg
    14461 cagatggcat cgttggcaaa ataatcgcgg atccccataa actccagctc ctcgggatcg
    14521 gcaaggcggt acaaatcaaa gtgataaacc attaaattgt cgagcgtata gggttcgacc
    14581 agcgtataag tggggctttt gacattaccc tgatgaccca gagcttgtaa aaagccccgg
    14641 ctaaaggtgg tcttacctgc gcctaaatcg ccatacagat agattacggt tgcgccatcg
    14701 caggctttcg ctacccgctc gcccaggtct aatgttgcct gctcatcagg gagcggaatt
    14761 actcgattca tcatggtttt tatcagtcac ttccgggtta acaatacgct gtagcgtgga
    14821 aaagagatcg gttgccagca tcccgcgcgt tccaaaacgc gccgccagta cgtcagctgc
    14881 cgcaccgtgc gcgacacagc ccgcacaggc ggcatcatac ggcgacagtt tttgcccaag
    14941 caatgcgcca ataataccag agagcacatc gcccatgccg ccgctcgcca tgcctgcatt
    15001 tccggcatca ataatgccta aagcgtcagg atgggcggcg accacggttc cggcaccttt
    15061 cagcaccgct acgccgccat aacgttgtac cagacgtttg gcgcaatgta agcggtcact
    15121 ttcaatttca gcgacggaac agcctaacaa ccgtgcggcc tcgccaggat gcggcgtgat
    15181 cacgcgattg tgacgcttat cgggattgat tgccagcagg ttcaatgcat cggcatccca
    15241 caacatcggt ttgcgaaaat tctcaacttt ttgcagtgct tttttccccc actcttgctg
    15301 gcccagaccg ggaccaatca ccaccacatc ggcccattcc aggctttcgg taagagagtc
    15361 catcgtcagt tcatgcacca tcaattccgg tcgtgcagtc agcagcggcg caatgttttc
    15421 actgcgggtc agtactcgga ctaaaccagc accagcacgc agcgccgctt cccccgtcat
    15481 acgaatagcc cccgccgtgc cgtgatcgcc accgataatt accagccgcc cgtgatcgcc
    15541 tttatgcgaa gtcgggcgac gcggttttag ccagtgagaa agttgttctg ctgaaaaccg
    15601 ctgaattttc gtctcctgac ctgccagcca actatccagc cccagtgagt caaaatgcag
    15661 ttgtccggta acatcccgcg cttttccagt gagcaagcct ggtttcagcg caataaaagt
    15721 gatggtgtga tcggcgttga tcaccgcgcc tggcgtagcg ccagtttcag ccagcaggcc
    15781 ggaagggata tcaaccgcca caatcggcgc aggatgggaa ttagcgtggt cgattaactg
    15841 gctaatggat tcgcggggcg cttgccgcaa accggtaccg agcagcgcat caacaatcag
    15901 atctaccgat tcgggccaga caatattcga agcatggatc tcgccacccg cgtttaacca
    15961 tgcttcgcgt gccagcgcgg cctcttccgg caacggtttg tcgctctcct gggcaaacaa
    16021 cgtgacctca atgccgaccg ctttggccag tcgcgcgacc acgtagccat cgccgccgtt
    16081 attaccatga ccgcacagca ccagccagtg gcgggcgtca ggatacgccg aacgacacac
    16141 ctggaatgcg gcctcgccag cgcgaagcat cagctcatag agtgtgagcc ccagcacatc
    16201 tgccgcctcg cgttctccgc ggcggatatc gtcggcgtac cagacggtgt gtggtatact
    16261 tacggggttt ttcttcattg tatggtccgt catgtcagag cccctcgatc tcaatcagtt
    16321 agcgcaaaaa attaaacagt gggggctgga actgggcttt cagcaggtag gtattaccga
    16381 taccgatctc agcgagtccg agcccaaact gcaagcatgg ctggacaaac aataccacgg
    16441 cgaaatggac tggatggcac gtcacggtat gctgcgcgct cgccctcatg agttattgcc
    16501 cggtacgctg cgcgtgatca gcgtgcggat gaattacctt cctgctaacg ccgcatttgc
    16561 cagcacgctg aaaaacccca aactcggcta tgttagccgt tatgcgctgg gccgtgacta
    16621 tcacaaactt ctgcgcaacc gactcaaaaa gctgggcgag atgattcagc aacattgtgt
    16681 ttcgctgaat tttagaccgt ttgtcgattc tgcgcctatt ctcgagcgcc cgttagctga
    16741 aaaagctggg ctcggctgga caggtaagca ctcacttatc ctcaatcgcg aggccggttc
    16801 gttcttcttt ttaggcgaat tgctggtcga tattccgctg cccgtggatc aaccagtcga
    16861 ggaaggatgc ggtaaatgcg tggcctgtat gacgatttgc ccgaccggtg ccatcgtcga
    16921 gccatatacc gtcgatgctc gccgctgtat ctcttatctc accatcgaac ttgaaggggc
    16981 gatcccggaa gagttgcgac cgttaatggg aaaccgtatt tacggttgcg atgactgcca
    17041 gcctatctgc ccgtggaatc gctattcaca actcaccaca gaagaggatt tcagcccgcg
    17101 taagccgcta cacgcaccgg aactcattga gttattcgcc tggagcgaag agaagttttt
    17161 aaaagtcacg gaaggatcgg cgattcgtcg aattggtcac ctgcgttggc tgcgtaatat
    17221 cgccgtagca ttaggcaatg ccccttggga tgaaacgatt ttgacagcgc tggaaagtcg
    17281 taaaggtgag cacccacttc tcgatgagca catagcgtgg gcgattgcgc agcaaataga
    17341 gagacgaaat gcgtgcatag tcgaagtgca attgccgaaa aaacagcgtc tggttcgggt
    17401 gattgaaaaa gggttaccgc gtgacgcctg attcatccac agcttgtgaa taaaaataaa
    17461 aacgcattgc aattcaagac gaataaaatc gtcaagtgat cgactcgaca aaacggaatc
    17521 ttaattttta acttatctat caataggtta aaaaaatact attcaccgtg cgaagtttct
    17581 ttgaaattaa gattacagcc tgaggctgtg gataactctg tttacaagag tttgtcagag
    17641 acaacgaaaa ccagcaataa cgcatcgctg tggatatttt attgagagaa gaatttggag
    17701 cgggaaacga gactcgaact cgcgaccccg accttggcaa ggtcgtgctc taccaactga
    17761 gctattcccg cttgggtggt ctgtgcctta cagcactttt caaattttgg agcgggaaac
    17821 gagactcgaa ctcgcgaccc cgaccttggc aaggtcgtgc tctaccaact gagctattcc
    17881 cgcttgggtg gtctgtgctt tgcagcactt ttcaaatttt ggagcgggaa acgagactcg
    17941 aactcgcgac cccgaccttg gcaaggtcgt gctctaccaa ctgagctatt cccgcgtact
    18001 acttaatttt gctttcgtaa ttttcgcatt tctgcgtcgt tacgggaggc gtattatacg
    18061 agaaatcttt ccctctgcaa ccccccaaaa aagttttttt tgcgttttta tctcaagtgc
    18121 tgaaattatc agcaagacgt tcaatttagc gtcaaaatca cgccgccgca agtggattcc
    18181 ggcgcttacg tgaccaggaa aaattttaca gcttgataaa atgctcgcgg tagtaagcca
    18241 gctccgccac cgattcacgg atatcatcca tcgcctgatg cgtcccctgc ttggtaaaac
    18301 tatccagaat ttccggcttc cagcggcgcg ccagctcttt cagggtgctg acatcgagat
    18361 aacggtagtg gaagtaggct tccagctccg gcatgtattt aaacaggaaa cgacggtcct
    18421 gtccgatgct gttaccgcaa atcggcgatt ttcccgcagg cacccactgt tttaagaatt
    18481 cgagcgttgc cagttcagct tcccgatcgc ccatcgtgct cgctttcacg cgctctacca
    18541 gcccgctggc ggtatgggtg cgcacgttcc agtcatccat cagcgccagc tgttcatcgg
    18601 actgatgtac tgcaatggtc ggcccttctg ccagaatatt caggttggca tcggtcacca
    18661 gcgtggcaat ctcaataatg cgatcgcgct cgggatccag accagtcatc tcaagatcga
    18721 tccaaatcag gttgttttca ttggcactca tgctattttc cacccattca cagtgactat
    18781 attgatccac aattgcgtgt atcatagatg ttttgcccat caggggcgac caggagtctg
    18841 tacgattgag taaaaataaa ctctccaaag gccagcagcg ccgcgtgaac gccaatcacc
    18901 agcgtcgtct taaaacgtct aaggagaagc ccgactacga cgacaatctg tttggcgagc
    18961 ctgatgaagg tatcgtcatc agccgctttg gtatgcacgc tgatgtggaa tccgccgatg
    19021 gcgacgttca ccgctgcaat attcgccgta ccatccgttc gctggtgacc ggcgaccgtg
    19081 tagtctggcg tccgggtaaa ccggcggcgg aaggcgtaaa tgtcaaaggg atcgtggaag
    19141 cggtgcatga gcgtacctcg gtgttgacgc gtccggattt ctacgacggc gtaaaaccta
    19201 ttgccgccaa catcgaccag attgtcattg tctccgccat tttgccggag ctgtcactca
    19261 atattatcga ccgttacctg gtggcctgcg aaaccttgca gattgagccg attattgtgc
    19321 tcaacaagat agacctgctg gacgacgaag gcatggcgtt cgtcaacgag cagatggata
    19381 tctaccgcaa tatcggttat cgcgtattga tggtttccag ccatactcag gatgggctaa
    19441 aaccgctgga agaggcgttg accgggcgca tcagcatttt tgccgggcag tctggcgtcg
    19501 gcaaatccag cctgctgaat gagttgctgg ggctgcaaaa agagatcctg accaacgatg
    19561 tctctgacaa ctcggggctc ggtcagcaca ccacgaccgc cgctcggctg tatcacttcc
    19621 cgcacggcgg tgatgtgatt gattcccctg gtgtgcgtga gttcggcctc tggcacctgg
    19681 agccggaaca aatcactcag ggctttgtcg aattccatga ctatttaggt ctgtgtaaat
    19741 atcgcgattg caaacacgat accgatccgg gctgcgctat ccgggaagcg gttgaggaag
    19801 ggaaaatcgc ggaaacccgt ttcgaaaact atcaccgtat tctggaaagc atggcgcagg
    19861 taaaaacgcg taaaaacttt tctgatacgg atgactgaca attaagctaa ccgtcgttag
    19921 aatcgtcccc tttttttcag gatccggcat gttggccgga tcaggaacga caaaacaatg
    19981 gcctggaggc taccttgtta aattcattta aactttcgct acagtacatt ctgccgaaac
    20041 tatggcttac tcgcctggcg ggttggggcg caagcaagcg ggcaggatgg ctgacaaaac
    20101 tggttatcga tctgttcgtt aaatactaca aggtcgacat gaaagaggcg caaaagccgg
    20161 acaccgccag ctaccgcacc tttaacgaat tctttgtccg tccgctgcgt gacgaagtac
    20221 gcccaatcga taccgatccg aatgtactgg tcatgcctgc cgatggcgtt atcagccagt
    20281 tgggtaaaat cgaagaagat aaaatcctgc aagccaaagg ccacaactac agcctcgaag
    20341 ccctgctggc aggcaactat ctgatggcgg acctgttccg caacggtacg tttgtgacca
    20401 cttacctctc cccgcgtgac taccatcgcg tacacatgcc gtgcaacggt attctgcgtg
    20461 agatgatcta cgtgccgggc gatctcttct ccgttaacca tctcaccgct cagaacgtgc
    20521 cgaatctgtt tgcccgtaac gaacgcgtga tttgcctttt cgataccgaa tttggcccaa
    20581 tggcgcagat tctggtcgga gcgacgattg ttggcagcat tgagacggtc tgggcgggca
    20641 ccattacgcc gccgcgcgaa ggtatcatca agcgctggac ctggcctgcc ggggaaaacg
    20701 acggttctgt ggcactgctg aaaggccagg aaatgggtcg ctttaaactc ggttccaccg
    20761 ttatcaacct gtttgcaccg ggtaaagtga atctggttga gcaactggaa agcctgtctg
    20821 tcacgaaaat tggccagccg ctggcagtat ctaccgaaac ctttgttacg ccagacgctg
    20881 aacccgcccc acttcctgct gaagagatcg aagcagaaca cgacgccagc ccattggttg
    20941 acgataaaaa agaccaggtc taatccatca aaggaaacgc tgacgtgcgc ctgattatca
    21001 cttttctgat ggcctggtgc ctcagttggg gggcgtacgc cgcgacggcc cccgatagca
    21061 aacaaatcac tcaggaactg gagcaggcaa aagcggcgaa acccgcacag ccggaagtcg
    21121 tagaggcgct ccagtctgcc ttaaatgcgc ttgaggaacg aaaaggttcc cttgagcgca
    21181 tcaaacaata tcagcaagtt atcgataatt atccgaaact ctccgctact ctgcgcgcac
    21241 aattaaacaa catgcgtgac gagccgcgca gcgtgtcgcc gggaatgtct accgacgcgc
    21301 tgaatcagga aattctccag gtcagcagcc agttgctgga taaaagccgt caggcccagc
    21361 aagagcagga gcgcacccgc gagattgccg attcgctgaa tcaactgccg caacagcaaa
    21421 ccgacgcccg ccgtcagtta aatgagatcg agcgccgcct gggaacgctt accggcaata
    21481 ctccgctcaa tcaggcacaa aatttcgcgt tgcagtctga ctctgcacgt cttaaggcgc
    21541 tcgttgatga actggagctg gcgcagctgt ctgccaataa ccgccaggaa ttagcgcgct
    21601 tacgctcaga gctggcggaa aaagagagcc agcaactgga tgcgtatttg caggccttgc
    21661 gtaatcaatt aaacagccaa cgtcagcttg aggcggagcg ggcgctggaa agtaccgaat
    21721 tgctggcaga aaacagcgcc gatttgccga aagatatcgt cgcgcaattc aaaattaacc
    21781 gcgaactatc ggcggctttg aatcaacagg cgcagcggat ggatctcgtt gcctcgcaac
    21841 agcgtcaggc tgccagccag acgttacagg tccggcaggc gttgaatacg ctgcgtgaac
    21901 agtcgcaatg gctgggatcg tccaatctgc tcggcgaagc gctgcgggcg caggtggcac
    21961 ggctgccaga aatgccaaaa ccacaacagc ttgataccga aatggcgcag ttgcgtgtgc
    22021 aacggttacg ttatgaggat ctgcttaata aacagccgct gctacggcaa atccatcagg
    22081 ccgacggtca gccgctgacc gccgagcaaa accgtattct ggaagcacaa ctgcgcactc
    22141 agcgtgagtt gctgaactca ttgttgcagg gtggcgacac gctactattg gaactgacca
    22201 agctgaaagt ctccaacggg caactggagg atgcgctgaa agaggtgaac gaagcaacgc
    22261 accgctatct gttctggacc tctgacgtgc gcccgatgac catcgcctgg ccgctggaaa
    22321 tcgcccagga tctgcgtcgt ctcatttcgc tggacacctt cagtcagttg ggcaaagcca
    22381 gtgtgatgat gctgacgagc aaagagacaa ttttgccgct gtttggcgcg ttgattctgg
    22441 tcggttgcag tatttactcg cgccgctatt tcacccgttt tcttgaacgt tcggcggcga
    22501 aagttggcaa agtgactcag gatcacttct ggctgacgtt gcgcactctt ttctggtcga
    22561 ttctcgtcgc gtcaccgtta ccggtgctgt ggatgacgct gggttacggc ttgcgcgagg
    22621 cgtggcctta tccgctggcg gtcgcgattg gcgatggtgt aacggctacc gtgccgctgc
    22681 tgtgggtagt gatgatttgc gccacctttg cccgcccgaa cggcttgttt atcgctcatt
    22741 ttggctggcc gcgcgaacgt gtttcccgtg ggatgcgcta ctacctgatg agcatcgggc
    22801 ttattgtgcc gctgattatg gcgctgatga tgttcgataa cctcgacgac cgtgaattct
    22861 ccggttcgct gggacggctt tgctttatcc tcatttgcgg tgcgctggcg gtggtcaccc
    22921 tcagcctgaa aaaggccggg atcccactgt atctcaacaa agagggcagc ggcgacaaca
    22981 ttaccaacca tatgctgtgg aacatgatga ttggcgcgcc gttggttgcc attctggcgt
    23041 cggctgtggg ttatctggca acggcacagg cgctgttagc gaggcttgaa acctcggttg
    23101 ccatctggtt cctgctactg gtggtttatc acgttatccg ccgctggatg ctgatccagc
    23161 gccgcaggct ggcgtttgac cgggcgaagc atcgccgggc agagatgtta gcgcaacgtg
    23221 cgcgtggcga agaggaagcg catcatcaca gtagcccgga aggagcaatt gaagtcgatg
    23281 aaagcgaagt cgatctcgat gccatcagtg cgcaatcctt gcggctggtg cgctcaattt
    23341 tgatgttgat cgccctgctt tctgtcattg tgctgtggtc agaaatccat tccgctttcg
    23401 gcttcctcga aaatatttcg ctgtgggatg tcacctccac ggtacaaggc gtagaaagtc
    23461 tggagccaat taccctcggt gcggtgctga ttgccattct ggtgtttatc atcaccacgc
    23521 agctggtgcg caacctgccc gcgctgctgg aactggcgat tttgcagcac ctggatttaa
    23581 cgccgggtac aggctacgcc atcaccacca tcaccaaata tctgctgatg ctgattggcg
    23641 ggctggtcgg cttctcgatg attggtattg aatggtcgaa attgcagtgg ctggtcgccg
    23701 cgctcggtgt tggtctcggt tttggtttgc aggaaatttt cgccaacttt atctctggtc
    23761 tgattatcct gttcgaaaaa ccgattcgca ttggcgatac ggtgacaatt cgcgatctca
    23821 ccggtagcgt gacgaaaatt aacacccgcg ccaccaccat cagcgactgg gaccgtaaag
    23881 agataatcgt gccgaacaag gcgtttatta ccgagcagtt tatcaactgg tcgctctctg
    23941 actcggttac gcgcgtagtg ttgacgattc cggcccctgc tgatgccaac agtgaagaag
    24001 tgacggaaat cctgctcacc gcagcgcgtc gctgctcgct ggtgatcgac aacccggcac
    24061 cggaagtctt cctggtggat ctgcaacaag ggattcagat tttcgagctg cgtatttatg
    24121 ccgctgagat gggtcaccgt atgccgctac gccatgagat ccaccagctg attctggctg
    24181 gcttccatgc ccacggtatc gatatgccat tcccgccctt ccagatgcgt ctggaaagcc
    24241 tcaacggtaa acaaacgggg agaacgctga cgtctgcggg caaaggtcgt caggcgggaa
    24301 gtttgtaatg catgaagctg ccaaatgatg tcaacgtggc tcatttagca gcttaacatc
    24361 atcttcagtt atcaccggcc ctggagagta tcatccatac gcattacttc ctgacaactc
    24421 atcgccggag agacgatgag ttgcaggatt tcatatgatc agtcgagagc taactcaggt
    24481 ttattcgcca tgcgactgca atagttctgg taaatcgcca tcgctaacag cgagaagaag
    24541 acagggccgc caatcatcca caatgtgctg tcccagtctc cggcttcaac cacaggcgga
    24601 ataatggtga agacgttcgc aaatgtcacc accagtacga caaccaccgt cgcaatcatt
    24661 gccgacatac gcgttttgaa aatcacaaat ggtctgtcga gatcctgacg tgctttaaag
    24721 aatgggaaag ccagcgcgag gaacaggtaa ggaag
//
LOCUS       DAJVSY010000051        24739 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.051, whole genome shotgun sequence.
ACCESSION   DAJVSY010000051 DAJVSY010000000
VERSION     DAJVSY010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24739)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24739)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24739
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.051"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(47..337)
                     /locus_tag="OQQ19_001834"
     CDS             complement(47..337)
                     /locus_tag="OQQ19_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1803488.1"
                     /translation="MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYF
                     TDDKRDDGDKTYARLGFKGETQINDQMIGFGHWEYDFKGYNDEANGSRGKNL"
     gene            complement(596..1477)
                     /gene="yddG"
                     /locus_tag="OQQ19_001835"
     CDS             complement(596..1477)
                     /gene="yddG"
                     /locus_tag="OQQ19_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415990.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid efflux DMT transporter YddG"
                     /protein_id="HCS1803489.1"
                     /translation="MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLS
                     GLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEICLALSLGYAATRHQAIEAGMVNYLW
                     PSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGENGLHYDEIINNITTSPLSYF
                     LAFIGAFIWAAYCTVTNKYARGFNGITVFVLLTGASLWVYYFLTQQPEMVFSTPVMIK
                     LISAAFTLGFAYAAWNVGILHGNVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGA
                     LMVCGGSLLCWLATRRG"
     gene            1709..4756
                     /gene="fdnG"
                     /locus_tag="OQQ19_001836"
     CDS             1709..4756
                     /gene="fdnG"
                     /locus_tag="OQQ19_001836"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:2294..2296,aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HCS1803490.1"
                     /translation="MDVSRRQFFKICAGGMAGTTVAALGFAPKQALAQARNYKLLRAK
                     EIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYV
                     NSENRLRYPEYRAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLS
                     TGMLCASGASNETGMLTQKFARSLGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV
                     DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIAVDPRFTRTASVADIYAPIR
                     SGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYD
                     KSSWNYQFDENGYAKRDETLTHPRCVWNLLKAHVSRYTPDVVENICGTPKADFLKVCE
                     VLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN
                     IQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLAGQVNYWSNYPKFFVSL
                     MKSFYGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDK
                     NKVVSCLSKLKYMVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDG
                     SIANSGRWLQWHWKGQDAPGEARNDGEILAGIYHHLRELYQAEGGKGVEPLMKMSWNY
                     KQPHEPQSDEVAKENNGYALEDLYDANGVLIAKKGQLLSSFAHLRDDGTTASSCWIYT
                     GSWTEQGNQMANRDNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPWDPKRMLI
                     QWNGSKWTGNDIPDFGNAAPGTPTGPFIMQPEGMGRLFAINKMAEGPFPEHYEPIETP
                     LGTNPLHPNVVSNPVVRLYEQDALRMGKKEQFPYVGTTYRLTEHFHTWTKHALLNAIA
                     QPEQFVEISETLAAAKGINNGERVTVSSKRGFIRAVAVVTRRLKPLNVNGQQVETVGI
                     PIHWGFEGVARKGYIANTLTPNVGDANSQTPEYKAFLVNIEKA"
     gene            4769..5653
                     /gene="fdnH"
                     /locus_tag="OQQ19_001837"
     CDS             4769..5653
                     /gene="fdnH"
                     /locus_tag="OQQ19_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase N subunit beta"
                     /protein_id="HCS1803491.1"
                     /translation="MAMETQDIIKRSATNSITPPSQVRDYKAEVAKLIDVSTCIGCKA
                     CQVACSEWNDIRDEVGHCVGVYDNPADLSAKSWTVMRFSETEQNGKLEWLIRKDGCMH
                     CEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKC
                     TLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLELAEQRVAKLKARGYEHAGVYNPEG
                     VGGTHVMYVLHHADQPELYHGLPKDPKIDTSVSLWKGALKPLAAAGFIATFAGLIFHY
                     IGIGPNKEVDDDEEDHHE"
     gene            5646..6299
                     /gene="fdnI"
                     /locus_tag="OQQ19_001838"
     CDS             5646..6299
                     /gene="fdnI"
                     /locus_tag="OQQ19_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit gamma"
                     /protein_id="HCS1803492.1"
                     /translation="MSKSKMIVRTKFIDRVCHWTVVICFFLVALSGISFFFPTLQWLT
                     QTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIVEVLKGNEHK
                     VADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGI
                     ILIHAILIHMYMAFWVKGSIKGMIEGKVSRRWAKKHHPRWYREIEKAEAKKESEEGI"
     gene            complement(6350..6634)
                     /locus_tag="OQQ19_001839"
     CDS             complement(6350..6634)
                     /locus_tag="OQQ19_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HCS1803493.1"
                     /translation="MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTG
                     KAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ"
     gene            complement(6780..7790)
                     /gene="adhP"
                     /locus_tag="OQQ19_001840"
                     /pseudo
     CDS             complement(6780..7790)
                     /gene="adhP"
                     /locus_tag="OQQ19_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415995.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
     gene            complement(7924..9621)
                     /gene="maeA"
                     /locus_tag="OQQ19_001841"
     CDS             complement(7924..9621)
                     /gene="maeA"
                     /locus_tag="OQQ19_001841"
                     /EC_number="1.1.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HCS1803494.1"
                     /translation="MEPKTKKQRSLYIPYAGPVLLEFPLLNKGSAFSMEERRNFNLLG
                     LLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPV
                     IYTPTVGAACERFSEIYRRSRGVFISYQNRHNMDDILQNVPNHNIKVIVVTDGERILG
                     LGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRI
                     IDDEYYEFVDEFIQAVKQRWPDVLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAA
                     VTVGTLIAASRAAGGQLSEKKIVFLGAGSAGCGIAEMIIAQTQREGLSEEAARQKVFM
                     VDRFGLLTDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQ
                     TGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVV
                     WKDKIYPIAQCNNAFIFPGIGLGVIASGASRITDEMLMSASETLAQYSPLVLNGEGLV
                     LPELKDIQKVSRAIAFAVGKMAQQQGVAVKTSAEALQQAIDDNFWQAEYRDYRRTSI"
     gene            complement(9778..9915)
                     /gene="sra"
                     /locus_tag="OQQ19_001842"
     CDS             complement(9778..9915)
                     /gene="sra"
                     /locus_tag="OQQ19_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stationary-phase-induced ribosome-associated
                     protein"
                     /protein_id="HCS1803495.1"
                     /translation="MKSNRQARHILGLDHKISNQRKIVTEGDKSSVVNNPTGRKRPAE
                     K"
     gene            complement(10017..10232)
                     /gene="bdm"
                     /locus_tag="OQQ19_001843"
     CDS             complement(10017..10232)
                     /gene="bdm"
                     /locus_tag="OQQ19_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310112.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm-dependent modulation protein"
                     /protein_id="HCS1803496.1"
                     /translation="MFTYYQAENSTAEPALVNAIEQGLRAEHGVVTEDDILMELTKWV
                     EASDNDILSDIYQQTINYVVSGQHPTL"
     gene            10578..11009
                     /gene="osmC"
                     /locus_tag="OQQ19_001844"
     CDS             10578..11009
                     /gene="osmC"
                     /locus_tag="OQQ19_001844"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin OsmC"
                     /protein_id="HCS1803497.1"
                     /translation="MTIHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGEK
                     GTNPEELIGAAHAACFSMALSFMLGEAGFTPTSIDTIADVSLDKVDAGFAITKIALKS
                     EVAVPGIDASTFDGIIQKAKAGCPVSQVLKAEITLDYQLKS"
     gene            complement(11065..11991)
                     /locus_tag="OQQ19_001845"
     CDS             complement(11065..11991)
                     /locus_tag="OQQ19_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1803498.1"
                     /translation="MSDTLLTLRGVHINFPARKNWLGKTTEHVHAINGIDLQIRRGET
                     LGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVFQDPLSSLNPRLPVWRI
                     ITEPLWIAKRSSEQQRRALVEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQ
                     PDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYL
                     GQIVELGDAQQVLTAPAHPYTRLLLDSLPAIDKPLEEEWALRKTDLPGNRTLPQGCFF
                     YERCPLATSGCEVRQSLAIREDGRELRCWRAL"
     gene            complement(11984..12970)
                     /locus_tag="OQQ19_001846"
     CDS             complement(11984..12970)
                     /locus_tag="OQQ19_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1803499.1"
                     /translation="MTQPVLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGES
                     GSGKSVTAMLIMRLLPTGSYCVHRGQISLLGDDVLNAREKQLRQWRGARVAMIFQEPM
                     TALNPTRRIGLQMMDVIRHHQPISRREARAKAIVLLEEMQIPDAVEVMSRYPFELSGG
                     MRQRVMIALAFSCEPQLIIADEPTTALDVTVQLQVLRLLKHKAGASGTAVLFISHDMA
                     VVSQLCDSVYVMYAGSVIESGVRADVIHHPRHPYTIGLLQCAPEHGVPRQLLPAIPGT
                     VPNLTHLPDGCAFRDRCYAAGAQCENVPALTACGDNNQRCACWYPQQEVISV"
     gene            complement(12967..13863)
                     /locus_tag="OQQ19_001847"
     CDS             complement(12967..13863)
                     /locus_tag="OQQ19_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D,D-dipeptide ABC transporter permease"
                     /protein_id="HCS1803500.1"
                     /translation="MMLSEETSAVRPQKQTRFNGAKLIWMLKGSPLTVTGAVIIVLML
                     LMMFFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLV
                     VVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAM
                     LAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQA
                     SLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAV
                     GFNLFGDGIRDLLDPKAGGKQS"
     gene            complement(13860..14882)
                     /locus_tag="OQQ19_001848"
     CDS             complement(13860..14882)
                     /locus_tag="OQQ19_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1803501.1"
                     /translation="MTFWSILRQRCWGLVLVMAGVCVITFIISHLIPGDPARLLAGDR
                     ASDAIVENIRQQLGLDQPLYVQFYRYVSDLFHGDLGTSIRTGRPVLEELRIFFPATLE
                     LAFCALLLALLIGIPLGILSAVWRNRWLDHLVRIMAITGISTPAFWLGLGVIVLFYGH
                     LQILPGGGRLDDWLDPPTHVTGFYLLDALLEGNGEVFFNALQHLILPALTLAFVHLGI
                     VARQIRSAMLEQLSEDYIRTARASGLPGWYIVLCYALPNALIPSITVLGLALGDLLYG
                     AVLTETVFAWPGMGAWVVTSIQALDFPAVMGFAVVVSFAYVLVNLVVDLLYLWIDPRI
                     GRGGGE"
     gene            complement(14884..16434)
                     /locus_tag="OQQ19_001849"
     CDS             complement(14884..16434)
                     /locus_tag="OQQ19_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCS1803502.1"
                     /translation="MKRSIPFRPTLLALVLATTFPVAHAAVPKDMLVIGKAADPQTLA
                     PAVTIDNNDWTVTYPSYQRLVQYKTDGDKGSTDVEGDLASSWKASDDQKEWTFTLKDN
                     AKFADGTPVTAEAVKLSFERLLKIGQGPAEAFPKDLKIDAPDEHTVKFTLSQPFAPFL
                     YTLANDGASIINPAVLKEHAADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYP
                     GNKPNFKRVSVKIIGESASRRLQLSRGDIDIADALPVDQLNALKQENKVNVAEYPSLR
                     VTYLYLNNSKAPLNQADLRRAISWSTDYQGMVNGILSGNGKQMRGPIPEGMWGYDATA
                     MQYNHDETKAKAEWDKVTSKPTSLTFLYSDKDPNWEPIALATQSSLNKLGINVKLEKL
                     ANATMRDRVGKGDYDIAIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYENSEVDKL
                     LRNALATTDQTQRTRDYQQAQKIVIDDAAYVYLFQKNYQLAMNKEVKGFVFNPMLEQV
                     FNINTMSK"
     gene            complement(16448..17029)
                     /gene="ddpX"
                     /locus_tag="OQQ19_001850"
     CDS             complement(16448..17029)
                     /gene="ddpX"
                     /locus_tag="OQQ19_001850"
                     /EC_number="3.4.13.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine dipeptidase"
                     /protein_id="HCS1803503.1"
                     /translation="MSDTTELVDLAVIFPDLEIELKYACADNITGKAIYQQARCLLHK
                     DAITALAKSISIAQLSGLQLVIYDAYRPQQAQAMLWQACPDPQYVVDVTVGSNHSRGT
                     AIDLTLRDEHGNILDMGAGFDEMHERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGIS
                     SEWWHFELPQAASYPLLADQFTCFISPGTQHVS"
     gene            complement(17287..19686)
                     /gene="dosP"
                     /locus_tag="OQQ19_001851"
                     /gene_synonym="pdeO"
     CDS             complement(17287..19686)
                     /gene="dosP"
                     /locus_tag="OQQ19_001851"
                     /gene_synonym="pdeO"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-sensing cyclic-di-GMP phosphodiesterase"
                     /protein_id="HCS1803504.1"
                     /translation="MKLTDAENAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKL
                     WGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIW
                     TRFALSKVSAEGKVYYLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQ
                     CNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRT
                     GEKIWIKASISPVYDVLAHLQNLVMTFSDITEERQIRQLEGNILAAMCSSPPFHEMGE
                     IICRNIESVLNESHVSLFALRNGMPIHWASSSHGAEVQNAQSWSATIRQRDGAPAGIL
                     QIKTSSGAETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNQHN
                     YLDDLVDKAVSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFRGKLKPDQYLCRI
                     EGTQFVLVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISYDVGKNHDYL
                     LSTAHNAIDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIF
                     AETGELYGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRS
                     QNIHIPALSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFK
                     RIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAI
                     TSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPLK
                     I"
     gene            complement(19711..21092)
                     /gene="dosC"
                     /locus_tag="OQQ19_001852"
                     /pseudo
     CDS             complement(19711..21092)
                     /gene="dosC"
                     /locus_tag="OQQ19_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310122.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DosC"
     gene            complement(21464..22783)
                     /locus_tag="OQQ19_001853"
     CDS             complement(21464..22783)
                     /locus_tag="OQQ19_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 10 protein"
                     /protein_id="HCS1803505.1"
                     /translation="MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSK
                     PPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLG
                     INTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWF
                     NPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITS
                     IVAEVVSRYPVDGVQFDDYFYTESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIT
                     KVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLD
                     YIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMING
                     GVPELKKQLDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS"
     gene            complement(22914..24449)
                     /gene="gadC"
                     /locus_tag="OQQ19_001854"
     CDS             complement(22914..24449)
                     /gene="gadC"
                     /locus_tag="OQQ19_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance gamma-aminobutyrate antiporter
                     GadC"
                     /protein_id="HCS1803506.1"
                     /translation="MATSVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVF
                     FLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIG
                     FIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGF
                     FAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVE
                     ASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFT
                     VLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNK
                     NGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVL
                     VLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLV
                     VSFLVVLALPFILYAVHDRKGKANTGVTLEPINSQNAPKGHFFLHPRARSPHYIVMND
                     KKH"
BASE COUNT         6180 a         6230 c         6224 g         6105 t
ORIGIN      
        1 tgtaatataa ggtcagtgat catattgtga tgggcactta actcaatcag agattcttgc
       61 cgcgcgagcc gttggcttca tcgttatagc ctttaaaatc atattcccag tgaccaaaac
      121 caatcatttg atcattgatt tgcgtttctc ctttaaagcc gagacgggca taagttttat
      181 caccatcgtc acgcttatca tcagtaaaat aacgtagagc ggtaaccttg ccataaaggt
      241 cgagtttatt accatccttg ttatagactt cggcagcgtg tgctacgttc gcagctaaca
      301 aaccagttac aaccaccgca actattttta atttcattta acagaatcct tttaattatc
      361 gtcaaacgta ttttctaaac gaattttaaa cggcgtcatt tataaatgac atactgtttt
      421 taaaatagaa tggtgattaa aaacaatgag aaaaatagat gagataatat tatttatcga
      481 tatgtgatcg aagtcgaaat gagatataag gtgaattact ggtatttgaa atttattttt
      541 taatattgtc ggaatttatc tgattaattg ccgggccgta gacccggcaa ttattttaac
      601 cacgacgtgt cgccagccag cagagcaggg aaccgccgca gaccattagc gcgccttgcc
      661 agaatgagaa cgacagcggg gcgctgagca gcacggctgc aagcgctgag gaaagtacgg
      721 gcgtaaaata cgagcctacc gccattatgg tgacattgcc atgcaatata ccgacattcc
      781 atgcagcata agcaaatcct aaggtaaatg ccgcagagat gagtttaatc atgacgggcg
      841 tgctaaatac catttctggt tgttgcgtaa gaaaatagta aacccacaga cttgctcccg
      901 ttagcaggac aaaaacggta attccgttaa atccgcgtgc gtatttattc gttactgtgc
      961 aataggctgc ccagataaac gcaccaataa acgccaggaa ataactcaat gggctggtgg
     1021 tgatattatt gatgatttca tcataatgta acccattctc accgcctaac acccagcaga
     1081 cgccgaccag ggctaataat aatcctggta caatcagcca gttggttttc tgaccattaa
     1141 acagaatggc aaagagaatt gtcaggctgg gccacagata gttcaccata cccgcttcaa
     1201 tcgcctgatg acgggtcgcc gcatacccta aggaaagcgc cagacagatt tcatagctga
     1261 cgaataacag actcccggcg agtaaatagc ctttcggaat ctgccgaata cgcggaaatc
     1321 caaccgtgaa gattaacagc agcccgctta atgaatagat agcagctgcg ccgccgaccg
     1381 ggccgagccc ctcgctgaca ccgcgaatca atcctaccat cgtgctccac aggacgatcg
     1441 ctattagccc tatgagcgtt gctttttgtc gtgtcatgct cgctgttttg tctctcttgc
     1501 cgttaaaaat taagctgaat tttatagcat ttttttaact ggcctgtcag gcagtggtgc
     1561 gtttttctac cgctattgag gtaggtcaat ttgcgcaggc ggattatttt gtggcaaaca
     1621 cgtgttcttt ttgatttcgc gcaaaaagat tcagaatttt actgttagtt tcctcgcgca
     1681 gtaatatccc tgaaaaaaga ggaaagcaat ggacgtcagt cgcagacaat tttttaaaat
     1741 ctgcgcgggc ggtatggctg gaacaacggt agcggcattg ggctttgccc ctaagcaagc
     1801 actggctcag gcgcgaaact acaaattatt acgcgctaaa gagatccgta acacctgcac
     1861 atactgttcc gtaggttgcg ggctattgat gtatagcctg ggtgatggcg cgaaaaacgc
     1921 cagagaagcg atttatcaca ttgaaggtga cccggatcat ccggtaagcc gtggtgcgct
     1981 gtgcccaaaa ggggccggtt tgctggatta cgtcaacagc gaaaaccgtc tgcgctaccc
     2041 ggaatatcgt gcgccaggtt ctgacaaatg gcagcgcatt agctgggaag aagcattctc
     2101 ccgtattgca aagctgatga aagctgaccg tgacgctaac tttattgaaa agaacgagca
     2161 gggcgtaacg gtaaaccgtt ggctttctac cggtatgctg tgtgcctccg gtgccagcaa
     2221 cgaaaccggg atgctgacac agaaatttgc ccgctccctc gggatgctgg cggtagacaa
     2281 ccaggcgcgc gtctgacacg gaccaacggt agcaagtctt gctccaacat ttggtcgcgg
     2341 tgcgatgacc aaccactggg tggatatcaa aaacgctaac gtcgtaatgg taatgggcgg
     2401 taacgctgct gaagcgcatc ccgtcggttt ccgctgggcg atggaagcga aaaacaacaa
     2461 cgatgcaacc ttgatcgctg tcgatcctcg ttttacgcgt accgcttctg tggcggatat
     2521 ttacgcacct attcgttccg gtacggacat tacgttcctg tctggcgttt tgcgctacct
     2581 gatcgaaaac aacaaaatca acgccgaata cgttaaacat tacaccaacg ccagcctgct
     2641 ggtgcgtgat gattttgctt tcgaagacgg cctgttcagc ggctacgacg ctgaaaaacg
     2701 ccagtatgat aagtcgtcct ggaactatca gttcgatgaa aacggctatg caaaacgcga
     2761 tgaaacactg actcatccgc gctgtgtgtg gaacctgctg aaagcgcacg tttcccgcta
     2821 cacgccggac gtcgttgaaa acatctgcgg tacgccaaaa gccgacttcc tgaaagtgtg
     2881 tgaagtgctg gcctccacca gcgcaccgga tcgcacaacc accttcctgt acgcgctggg
     2941 ctggacgcag cacaccgtgg gtgcgcagaa catccgtact atggcgatga tccagttgct
     3001 gctcggtaac atgggtatgg ccggtggcgg cgtgaacgca ttgcgtggtc actccaacat
     3061 tcaggggctg actgacttag gtctgctctc taccagcctg ccaggttatc tgacgcttcc
     3121 gtcagaaaaa caggttgatt tgcagtcgta tctggaagcg aacacgccga aagcgacgct
     3181 ggctggtcag gtgaactact ggagcaacta tccgaagttc ttcgttagcc tgatgaaatc
     3241 tttctatggc gatgccgcgc agaaagagaa caactggggc tatgactggc tgccgaagtg
     3301 ggaccagacc tacgacgtca tcaagtattt caacatgatg gacgaaggca aagtcaccgg
     3361 ttatttctgc cagggcttta acccggttgc gtccttcccg gacaaaaaca aagtggtgag
     3421 ctgcctgagc aagctgaagt acatggtggt tatcgatccg ctggtgactg aaacctctac
     3481 cttctggcag aaccacggcg agtcgaacga tgtcgatccg gcgtctattc agactgaagt
     3541 attccgtctg ccttcgacct gctttgccga agaagatggt tctatcgcta actccggtcg
     3601 ctggttgcag tggcactgga aaggtcagga cgcgccgggc gaagcgcgta acgacggcga
     3661 aattctggcg ggtatctacc atcatctgcg cgagctgtac caggccgaag gtggtaaagg
     3721 cgtagaaccg ctgatgaaga tgagctggaa ctacaagcag ccgcacgaac cgcaatctga
     3781 cgaagtggct aaagagaaca acggctacgc gctggaagat ctctatgacg ctaatggcgt
     3841 gcttattgcg aagaaaggtc agttgctgag tagctttgcg catctgcgtg atgacggtac
     3901 aaccgcatct tcttgctgga tctacaccgg tagctggaca gagcagggca accagatggc
     3961 taaccgcgat aactccgacc cgtccggtct ggggaatacg ctgggatggg cctgggcgtg
     4021 gccgctcaac cgtcgcgtgc tgtacaaccg tgcttcggcg gatatcaacg gtaaaccgtg
     4081 ggatccgaaa cggatgctga tccagtggaa cggcagcaag tggacgggta acgatattcc
     4141 tgacttcggc aatgccgcac cgggtacgcc aaccgggccg tttatcatgc agccggaagg
     4201 gatgggacgc ctgtttgcca tcaacaaaat ggcggaaggt ccgttcccgg aacactacga
     4261 gccgattgaa acgccgctgg gcactaaccc gctgcatccg aacgtggtgt ctaacccggt
     4321 tgttcgtctg tatgaacaag acgcgctgcg gatgggtaaa aaagagcagt tcccgtatgt
     4381 gggtacgacc tatcgtctga ccgagcactt ccacacctgg accaagcacg cattgctcaa
     4441 cgcaattgct cagccggaac agtttgtgga aatcagcgaa acgctggcgg cggcgaaagg
     4501 cattaataat ggcgagcgtg tcactgtctc cagcaagcgt ggctttatcc gcgcggtggc
     4561 tgtggtaacg cgtcgtctga aaccgctgaa tgtaaatggt cagcaggttg aaacggtggg
     4621 tattccaatc cactggggct ttgagggtgt cgcgcgtaaa ggttatatcg ctaacactct
     4681 gacgccgaat gtcggtgatg caaactcgca aacgccggaa tataaagcgt tcttagtcaa
     4741 catcgagaag gcgtaagggg gcgaacagat ggctatggaa acgcaggaca ttatcaaaag
     4801 gtccgcaact aactccatca cgccgccttc tcaggtgcgt gattacaaag cagaagtcgc
     4861 aaaacttatc gacgtttcca cctgtatcgg ctgtaaagcc tgtcaggtgg cgtgttcgga
     4921 gtggaacgac atccgtgatg aagtggggca ctgcgtcggg gtttacgata accccgccga
     4981 tctgagcgcc aagtcctgga cggtgatgcg ctttagcgaa accgaacaga acggcaagct
     5041 ggagtggctg atccgtaaag acggctgtat gcactgtgaa gatcccggct gcctgaaggc
     5101 gtgcccgtct gctggtgcaa tcattcagta cgctaacggg attgtcgatt tccagtcgga
     5161 aaactgcatc ggctgtggtt actgcattgc cgggtgtccg tttaatattc cgcgcctcaa
     5221 caaagaggat aaccgggtat ataaatgcac gctctgcgtc gatcgcgtca gcgtcggcca
     5281 ggaaccggct tgtgtgaaaa cctgtccgac cggggctatc cacttcggca ccaagaagga
     5341 gatgctggag ctggcggaac agcgcgtggc gaaactgaaa gcgcgtggtt acgaacatgc
     5401 tggcgtctac aacccggaag gggtcggtgg tacgcacgtt atgtacgtgc tgcatcacgc
     5461 cgatcagccg gagctgtatc acggtctgcc gaaagatccg aagatcgaca cctcggtaag
     5521 cctgtggaaa ggcgcgttga aaccgctggc agcggctggc tttattgcca cttttgccgg
     5581 gttgattttc cactacatcg gtattggccc gaataaggaa gtggacgatg acgaggagga
     5641 tcatcatgag taagtcgaaa atgattgtgc gcaccaaatt tattgatcgc gtctgtcact
     5701 ggaccgtggt gatttgcttc ttcctggtgg cgctgtccgg gatttcgttc ttcttcccga
     5761 cgctgcaatg gctgacgcaa accttcggta cgccgcagat gggacgcatt ttgcacccgt
     5821 tcttcggcat tgcgattttc gtcgcgctga tgtttatgtt tgtgcgtttt gtgcatcaca
     5881 acatcccgga taagaaagat attccgtggc tattgaacat tgtcgaagta ttaaaaggca
     5941 atgagcacaa agtggcggat gttggtaagt acaacgccgg gcaaaagatg atgttctggt
     6001 cgatcatgag catgattttc gtgctgttgg tgaccggggt gattatctgg cgtccgtact
     6061 ttgcgcagta cttcccgatg caggttgttc gctacagcct gctgatccac gcggctgccg
     6121 gtatcatcct gatccacgcc atcctgatcc atatgtatat ggcattctgg gtgaaaggat
     6181 cgattaaagg gatgatcgaa gggaaggtaa gccgtcgctg ggcgaagaaa caccatccgc
     6241 gctggtatcg tgaaatcgag aaggcagaag cgaaaaaaga gagtgaagaa gggatataat
     6301 ctcttttgaa ctttaagctg aaaatggcgc tttaagaagc gccatttttt tattgcgtaa
     6361 ccagacggcg cagtcgcgac acatccaccg ttttttcagc ctctgccaga ctccaggcgt
     6421 tttgcagatt cagccacatt tgcggcgaac tgccgatcac cacggaaagt ttaattgcca
     6481 tttctggcgt caaagctgct tttccggtca gcaatcggct tgccgttgag ggcgcaattt
     6541 ccattgctct ggcaaactcg cgcaggctga cattaagttc gtccagtgat tcctgaataa
     6601 tgtcccccgg gcggggatga ttggccattt tcattagtgt ctttactctc agtagcgttc
     6661 cttctctggg aacactatca ttattgttcc ttcctacgca acaataatcc atttagccat
     6721 ttcatgttgg agagtgtgcg atgctgcgac ccgaacatgg gagtcgcagc aaagacctct
     6781 tagtgacgga aatcaatcac catacggcca cggattttgc cttcttccat ctcggtaaag
     6841 atggtgttga tgtccgctaa cggacgcagg gcgactttcg gcaccacttt gccttcggcg
     6901 gcaaactgga aggcttcggt tagatcctgg cgcgtgccga ccagcgaacc gaccacttca
     6961 atgccatcca gcacaagacg tgggatatcc aggctcatag actccggcgg cagaccgaca
     7021 gccacaacac gaccgcctgc acggacagca tcaactgccg agttaaacgc agctttagct
     7081 actgctgtta ccaccgcagc gtgagcgcca ccggttttct cctgcacaat ttaggcggcg
     7141 tcttcggtgc gtgagttaat cgctaaatct gcacccattt cggttgccag ttttaactgc
     7201 tcatcattga catcaatggc gatcactttg gcgttaaaga cattcttcgc gtattgcagg
     7261 gcgaggttac ccagaccgcc aagaccgtag atagcaatcc actgaccggg acgaattttt
     7321 gacagtttaa cggctttgta ggtggtgacc cccgcacagg taatgctgct ggccgccgcc
     7381 gagtccagac catctggcac ttttaccgcg taatcggcga ccacgatgca ctcttccgcc
     7441 atcccgccat caacgctgta tccggcattt ttaactgaac ggcagagcgt ttcgttacca
     7501 ctgttacagt attcgcaatg accgcatcct tcgtaaaacc acgccacgct ggcacgatcg
     7561 cctggtttta atgaggtgac acctgggcca acttctgcca ccacaccgat gccttcatgg
     7621 cccagaatta ccccagtttt gtcaccaaaa tcgccattct taacatgaag atcggtatga
     7681 catacaccac aacactccat tttcagcagg gcttcgccat gtttcagtga gcgcagtgtt
     7741 ttatccgtaa cgtcaacatg atgatccttc gtaacaactg cagccttcat agttcctcct
     7801 tttcggatga tgttctgcat agcaggtgag gcaaatgaga tttattcgcc actacccagt
     7861 atggatgaga tctgaaaaag ggagagggaa atagcccggt agccttcact accgggcgca
     7921 ggcttagatg gaggtacggc ggtagtcgcg gtattcggct tgccagaaat tatcgtcaat
     7981 ggcttgttgc aaagcttcag cagacgtttt caccgccacg ccttgctgct gcgccatttt
     8041 gccaaccgca aacgcaattg cgcgggagac tttctgaata tctttcagtt ccggtagtac
     8101 cagaccttcg ccgttcagca ccagcggcga atactgagca agcgtttcac ttgctgacat
     8161 cagcatctca tcggtgatac gtgacgcgcc ggaagcaata acacccagcc cgatgccagg
     8221 gaaaataaag gcgttgttac actgggcgat agggtagatt ttatctttcc ataccactgg
     8281 attaaacggg ctgccagtgg cgaccagcgc gttaccttcg gtccaggcga taatgtcctg
     8341 cggtgtggct tccacgcgtg acgtcgggtt agacagcggc atcacgatcg gacgcggaca
     8401 gtgtttatgc atctcacgga tgatctcttc cgtaaacagc ccggtctgtc ctgagacgcc
     8461 aatcagaata tctggtttta cattgcgcac cacatccagc agtgacagca catcgctgtc
     8521 ggtatcccag tcactgaggt tttcgcgttt ctgcaccagt ttggtctgga aaggcagcag
     8581 gttcggcatc ttgtccgtca gcaggccaaa gcgatcgacc ataaagactt tctgccgcgc
     8641 cgcttcctcg cttaatcctt cgcgctgggt ctgggcgatg atcatttcgg caatgccgca
     8701 tcccgctgaa cctgcaccaa ggaagacgat ttttttctcg cttaactgac cacctgccgc
     8761 tcggcttgct gcgatcagtg tgccgactgt taccgccgca gtgccctgaa tgtcatcgtt
     8821 aaaagaacaa atttcattgc gatagcggtt aagtaacggc atcgcatttt tttgagcaaa
     8881 gtcttcaaac tgcaacagca cgtctggcca gcgttgtttc acagcctgga taaattcatc
     8941 aacgaattca tagtattcgt cgtcaatgat acgcggatta cgccagccca tatacagcgg
     9001 atcgttaagc agctgttggt tgttcgttcc gacatccagc accaccggaa gggtatacgc
     9061 cgggctgatg ccgccacagg cggtatagag cgacagttta ccgatcggaa tgcccatccc
     9121 gccgatgccc tggtcaccaa gccccagaat acgttcaccg tcagtcacca caatcacttt
     9181 gatattatgg ttcggtacgt tttgcagaat atcgtccata ttgtggcggt tctggtaaga
     9241 gataaacacg ccgcgtgaac ggcggtagat ctcagaaaaa cgctcacagg ctgcgccgac
     9301 ggttggggta taaataacag gcatcatctc atcaagatga ttgtttacca gacggtagaa
     9361 gagggtttcg ttggtgtcct ggatgttacg caggtagatg tgtttgtcga tttcggtttt
     9421 gaatccctga tactggatcc atgctcgttc cgcttgttct tcgatggttt cgaccacttc
     9481 cggcagtaac cccagcaggt tgaagttacg gcgttcttcc atgctgaagg cactgccttt
     9541 attcaacaac ggaaattcca gcagtacagg gccagcgtaa gggatataaa gcgaacgctg
     9601 tttttttgtt tttggttcca tgtcactcac tcttttttga atatccatcc ctggcacgct
     9661 tttatcgtct ttgctttacc gccagggcgt cggccccaag tataaagcag ataaaaacaa
     9721 aaacaccatt gcgcaggcaa tggtgtttaa tcgtcattga ggactgatgg ttatgaatta
     9781 cttttcagcg gggcgttttc tgccggttgg gttatttacc acgctggatt tgtcaccttc
     9841 ggtaactatt ttgcgctggt tagaaatttt atggtccagt ccaagaatat gacgtgcctg
     9901 acggttcgat ttcattttaa ctcctcaatc ctgttgctag ttttaaggac aacatcgccg
     9961 tagcgaagaa acacgtgcta aacccctaaa ttaggttgcc gatcaagcat agcaccttaa
    10021 agcgtagggt gctggccact gaccacataa ttgatcgttt gctggtagat atcactgagg
    10081 atgtcgttat cagaagcttc cacccatttg gtcagctcca tgagaatgtc atcttcagtg
    10141 acaacaccgt gctctgcccg aaggccttgc tcaatggcat taaccagagc gggttctgct
    10201 gttgaatttt ctgcctgata ataagtaaac atagtgattc tccgtgtctg tgtatttatg
    10261 gtgtctgcta cggatcgcag atttataaag cacattcagc atggcaaata tttgccgctt
    10321 tgttgttaag attagtcctg gttgatgatt tttatatttt aacctcatga tattgatagg
    10381 tattattatt gtggtgagtt gattaatatt aatgcaatat ctcttgggtt atatattccc
    10441 ggttatctat tgtggaaatt taatttaagt gcagaagtaa tatttctgcc ggatttttat
    10501 tcggaatatc ctgcttatcc tcgtgctgtt tctcacgtag tctataattt cctttttaag
    10561 cccacatgag agcaacaatg acaatccata agaaaggtca ggcacactgg gaaggcgata
    10621 tcaaacgcgg gaagggaaca gtatccaccg agagtggcgt gctgaaccaa cagccgtatg
    10681 gatttaacac gcgttttgaa ggcgaaaaag gaactaaccc tgaagaactg attggcgcag
    10741 cgcatgccgc atgtttctca atggcgcttt cattcatgct gggggaagcg ggatttacgc
    10801 caacatcgat tgataccatc gccgatgtgt cgctggataa agtggatgcc ggttttgcga
    10861 ttacgaaaat cgcactgaag agtgaagttg cggtgccggg tattgatgcc tctacctttg
    10921 acggcatcat ccagaaagca aaagcaggat gcccggtctc tcaggtactg aaagcggaaa
    10981 ttacgctgga ttaccagttg aaatcgtaaa gcattgccgg atgacgtgtc aggcgcgtga
    11041 atgcctgatg cgttgttagc atctctacag cgcccgccag caccggagct cacgtccgtc
    11101 ctcccttatt gctaatgatt gccggacttc acatccgctg gttgcaaggg ggcaacgttc
    11161 gtagaaaaaa cagccttgcg gcaacgtgcg gtttcccggc agatccgttt tacgtaatgc
    11221 ccattcttcc tccagcggtt tatcaatggc ggggagggaa tccagcaata atcgggtgta
    11281 tggatgtgcc ggagccgtta gcacctgttg cgcgtcgccc agttctacaa tctgcccgag
    11341 atacatcacc gccacccgat cgctcatatg acgtatcacc gagacattgt gtgaaatcag
    11401 cacataggtc agcccgtgat tttcctgtag cgttaccagt aaattgagga tctgcgcctg
    11461 cacggagata tccagcgcag aggttggctc atcaagcaca atcacgtcag gctgcgaaga
    11521 gagtgctctg gcaatggcga tacgttgccg ctgcccgccg gagaacgcat gaggcaggcg
    11581 gtcgagatac tccggacgaa tacccacctg cacagccagc tcctctacca acgctcgccg
    11641 ctgttgttca ctactacgct tagctatcca gagcggttct gtgatgatgc gccacaccgg
    11701 taagcgcgga ttgagcgaag agagcgggtc ctgaaacacc atctgcataa tgcgttgtga
    11761 gccagaacgg atgtactgcc cgtggctcgg ttgcagcata cccattaaaa gctgtgcgag
    11821 ggtgcttttg ccgcagcctg actcgccgac gatccctaag gtttcaccac ggcggatctg
    11881 taaatcaata ccattaatcg catgaacatg ttccgtagtt ttaccaagcc agtttttacg
    11941 ggccgggaaa ttgatatgga cgccgcgtaa cgttaataac gtgtcagaca cttatgacct
    12001 cctgctgcgg ataccaacag gcgcagcgct ggttgttgtc accacacgct gtcagcgccg
    12061 ggacgttttc acactgtgca cctgccgcat agcaacgatc gcgaaaagcg cagccgtcag
    12121 gcaaatgggt gaggtttggt accgtccctg gaatggcggg taatagctgg cgtggtactc
    12181 catgttctgg tgcacattgg agcaaaccaa tggtatacgg atgccgggga tgatggataa
    12241 cgtctgccct cacgccgctt tcaattacgc ttccggcata catcacgtaa acgctatcgc
    12301 acagttgcga caccacggcc atatcatggc tgatgaacag aaccgcagtt ccactggcgc
    12361 cggctttatg tttaagcaaa cgcagtacct gcaactgcac cgtaacgtcc agcgccgtag
    12421 tcggttcgtc ggcaataatc aattgcggct cgcaggagaa tgccagcgca atcattaccc
    12481 gctggcgcat accacctgaa agctcaaacg gatagcgcga cataacttcc acggcatccg
    12541 ggatttgcat ctcttccagc aggacaatcg ctttagctct ggcttcccga cgacttattg
    12601 gttgatgatg gcggatcacg tccatcatct gaagacctat tcgacgtgtc ggattgaggg
    12661 cggtcatcgg ttcctgaaag atcatcgcca ctcgtgcgcc gcgccactga cgaagctgtt
    12721 tttcccgagc gttaagaaca tcgtctccca gcagtgaaat ctgcccccga tgtacgcaat
    12781 aactgcccgt cggtagcaga cgcataatca gcattgcggt gactgattta cctgagccgg
    12841 attctcccac cagaccgaca atttcaccgc ggttaatctg caaggacaca ttgttgagcg
    12901 cgtgaacatc accgttaaaa ccggggaaac tcaaatgcag ctgttgaatg tccagaacgg
    12961 gctgggtcat gactgctttc ctcctgcttt cgggtcaagc agatcgcgaa taccatcacc
    13021 aaagagatta aacccaacgg cggtaagcaa aatcgctgcc cctggaaatg cgcaatacca
    13081 ccactgatcg agtacatagt tgcgaccatt cgctaccatc gcgccccatt cagcactcgg
    13141 ttgttgagca cccaggccaa taaatcccaa cgtggcggcc attaaaatcg cgctaccgat
    13201 atccagcgat gcctgcacga tcagcggcgg cagggagtta cgtaaaatat gccagctgat
    13261 cagatgccaa cgcgacgcac caaaggtttt cgccgcctga acataggtat actggcgtac
    13321 aactaatgct tgcccccgcg ccaggcgcac ataaaaggga attcgcacaa tagcaatcgc
    13381 cagcatggcg ttaaataaac tcggcccgag agcggcagcc agtgccattg tcagtaccaa
    13441 cgaaggaatc gacagcataa tgtccatgat gcgcatgatg atggcgtctg cgcgtccgcc
    13501 aagcacaccg gatagacatc cgagtagcga accaatcata cccgcaatgg caaccacgac
    13561 taatccggcg agaattgatt gctgactgcc gaccagtacg cggctgaaca gatcgcgtcc
    13621 cacttcatcg gtgccaaacc agtgcgccgc agaaggcggc aaaaggcggg cggttaaatc
    13681 aatggcgttg ggatcatgcg tcgcaagcca cggtgaaaaa aacatcatca atagcattaa
    13741 tacaatgatg actgcgccgg tcacggtgag cggactgcct ttcagcatcc atatcagttt
    13801 tgcaccgtta aatcgcgttt gtttttgtgg gcgtacggcg gacgtttcct cgcttagcat
    13861 cattcaccac ctccacgtcc gatacgcgga tcaatccaca aatagagcaa atccaccacc
    13921 aggttgacca gcacataagc aaatgaaacc acgacggcaa agcccatcac tgccgggaag
    13981 tcgagcgcct gtattgatgt tactacccat gcacccattc cgggccaggc aaaaacggtt
    14041 tcggtgagca ctgcgccata caacaaatcg cccagcgcca gacccaatac ggtaatcgat
    14101 gggatcaacg cattgggtag cgcataacat aaaacgatat accagccggg caagccgctg
    14161 gcccgggcgg tacgaatgta gtcttcactc aattgttcca gcatcgctga gcggatctgg
    14221 cgagcgacaa ttcccaggtg aacgaacgcc agcgttaatg ccggtaagat gagatgttgc
    14281 aacgcattga agaagacttc accgttgcct tcaagcagcg catcgagcag ataaaagccg
    14341 gtaacgtgcg ttggtggatc cagccagtca tcaagccttc cgccgccggg aagaatttgc
    14401 agatgaccat aaaacagcac aatgacgccc agtccaagcc aaaacgcagg tgtggagatt
    14461 ccggtaatgg ccattattcg caccagatga tccagccagc gatttcgcca gactgcagag
    14521 agtatgccca gcgggatgcc aatcaggagt gccagcagca gggcacaaaa agccagttcc
    14581 agcgtcgccg ggaaaaatat acgcaactct tccaacaccg gacgcccggt acgaatggat
    14641 gttcccaggt caccatgaaa caggtcgctg acgtagcggt aaaactgtac atacagtggc
    14701 tggtccagtc ccagttgctg gcgaatattt tccacgatag catcgctggc gcggtcaccc
    14761 gccagtaacc gcgccggatc gccagggatc agatgcgaga taataaacgt aatcacgcag
    14821 acgcccgcca tcacgagcac cagcccccag cagcgttggc gtaaaatact ccagaaggtc
    14881 acgttattta ctcatggtat tgatattgaa gacctgttcc agcatgggat tgaacacaaa
    14941 gcctttcacc tctttgttca tcgccagttg gtagtttttc tggaacaggt acacataagc
    15001 agcgtcatca atgacgattt tctgtgcctg ctggtagtcc cgggtacgct gcgtctggtc
    15061 ggtggtcgca agcgcattgc gcagtaactt atcgacctca ctgttttcat agaacgagcg
    15121 gttacccggc agaccttttt tgtctgactc aaaccagtaa ttcataaaca tatacgggtc
    15181 ggcaaaatcc ggactccagt tgccaatcgc aatgtcgtaa tcacctttac ccactctgtc
    15241 gcgcatggtg gcgttcgcca gcttttccag cttcacattg atgcccagct tgttgagact
    15301 ggattgtgtc gccagagcaa taggctccca gttcggatcc ttatcggagt agagaaacgt
    15361 caggctggtg ggtttgctcg tcactttatc ccattcggct ttggctttcg tttcgtcatg
    15421 gttgtattgc attgccgtcg catcgtagcc ccacatgcct tccggaatcg ggccgcgcat
    15481 ctgttttccg ttaccactca gaatgccgtt aaccatgccc tgataatcgg tagaccagga
    15541 aatggcccga cgcagatccg cctgattaag aggcgctttg ctgttattca gatacaggta
    15601 ggtgacgcgc agtgacggat actctgccac attgactttg ttttcctgct tcagggcgtt
    15661 gagttgatcc accggcagcg catcggcaat gtcaatatca ccacgggaga gctgcaggcg
    15721 acgggaggca ctttcaccaa taatttttac cgatactcgc ttaaagttcg gtttattgcc
    15781 agggtaatgc ggatttggca ccagaactaa ttgctgacct ttttgccagc ttttcagcat
    15841 aaatggtccg gaaccggcgg tattttgcgc gaggaagccg cgggcatcat ccgctgcatg
    15901 ttcctttaac accgccggat tgataatgga tgcaccgtca ttcgccagcg tgtagaggaa
    15961 cggtgcgaat ggctggctaa gggtaaactt caccgtatgt tcgtcgggag catcaatctt
    16021 taaatctttg ggaaatgctt ctgctggccc ctggccgatt tttagtagcc gctcaaaaga
    16081 gagttttact gcttcggcag tgaccggtgt gccatcggca aatttagcat tgtccttcag
    16141 ggtgaacgtc cactcttttt gatcgtcaga cgctttccag ctacttgcca gatcgccttc
    16201 aacgtcggtt gagcctttat caccgtccgt tttgtactga accagccgct gataagacgg
    16261 gtaggtcacc gtccagtcgt tattatctat tgttaccgcc ggggcgaggg tttgtggatc
    16321 ggcggcctta ccaatcacca gcatatcttt cggtacggcg gcgtgcgcaa ccgggaaagt
    16381 tgtggcaagg acgagcgcga gcaatgtagg acgaaacggt atcgatctct tcatgacagt
    16441 ttcctgatta actgacgtgc tgtgtgccag gggatataaa acaggtgaat tgatcagcga
    16501 gcagtgggta actcgctgcc tggggtaatt cgaagtgcca ccattcgctg gagataccga
    16561 caaaaccgcc accagtcata atcgcattca gcaacagccg attgcgctga gcggcgggcg
    16621 ggacggaagg gtgataggca tgggagcgct cgtgcatttc atcgaaccct gcgcccatat
    16681 cgaggatgtt cccgtgctca tcacgaagcg tcaggtcgat cgccgtgcca cggctgtgat
    16741 tagaaccgac cgtcacatca acaacatatt gcgggtctgg gcaggcttgc cacaacatcg
    16801 cctgtgcttg ttgtgggcga tacgcatcgt aaatcaccag ttgtaagcct gacagctggg
    16861 cgatactgat acttttcgcc agcgcggtaa tcgcatcctt gtgtagcaga caacgcgctt
    16921 gctgataaat agctttacct gtgatgttat cagcgcaggc gtatttcaat tcgatctcca
    16981 gatcagggaa gattacggct aaatcaacca gttcggtggt atccgacata aacggttcct
    17041 gtataagaca aaaattgctg cgctttccgc ttatgcagat ctcatgccat gccgggataa
    17101 gcgccagaat gctggcttaa agttatattt tttaactttt gatcaacatt tgtgcagcgt
    17161 agtgcagttt tggtgcaaga ggggaagtta aggaaggaat ctcccggaat cgtagatgaa
    17221 atcacagtat ttaagtgacg gtgtcacgtt aaatgaaaac ccgcgagtgc gggcgagagg
    17281 aatttgtcag attttcagcg gtaacacgct gctcatccag cctggaattt cttcggcggg
    17341 tagggggcgg gaaaagaaat atccctgaat aacgcgacag tggatcttgc gtagcatctc
    17401 aaattgctct ttggtttcga cgccttccgc cacgacggtt aaattgaggc tttgcccaat
    17461 gctggtaatg gcttcaagta aggcaaggat gcgtttttcg gtcagacaac gatcgacaaa
    17521 acttttgtca attttgattt ccgttaccgg aagactgact aagcgggata atccggaaaa
    17581 gcccgtacca aaatcatcta ccgataagcc cacgcccata tcacgcagga tctgaatgcg
    17641 cttaaagatt tcggtatcgt gttccatcat catgctttcc gtgatttcta ccgtcagctg
    17701 gtggccgtca ataccccagg cgtgcattgc atcagacacc tgattaggca gttgattact
    17761 gcgaaagtgc agtgccgaca agttaacgga aagcgccggg atatgaatat tctggctacg
    17821 ccattctgct aactgacggc aagcttccgc gatgacccag cgcccaatat tttcgatttc
    17881 accaatctct tctgcgagag gaataaaccg tgaagggggc acatgaccat gctggggatc
    17941 gtgccagcgc gcaagggctt cgatgccgta cagttcaccc gtttctgcga agatttgcgg
    18001 ctggtaaaca agtttcagtt ggttattgct aatcgcttct ttcagcgctg cgcctaaaac
    18061 caaacgctct tttaccattt cgttcatcgc cgggctgaag aactgccagc cgttaccgcc
    18121 attcttgcga atataatcta ttgcattgtg agcagtggag agtaggtaat cgtggttttt
    18181 acccacgtcg tagctgatgc caatactcaa ggtaagcggg aatggtttat cgtcaatcat
    18241 tatcggcttg ctgaccacat tccgtagctc atcggcgatc tgggtaatgt tactgacgtc
    18301 gttttccagg ctcacgagga caaactgcgt accttcgata cgacagagat actgatccgg
    18361 tttgagtttt ccacgaaagc gattgaccac ttccagcaat gcctgatcgg cccacgcata
    18421 gccaaggcta tcaatcacat cctgaatatg gtcaacaccg atgagataca ccaccggaga
    18481 gacggctttg tcgaccaggt catcgaggta attgtgctgg ttattgcgat ttggcagacc
    18541 ggtcatcgga tcaaattgga tgagttgttc aatatgctgg cggctttttt cctgttccag
    18601 cgccagcgcg gccatatgct gactgatatc tgccacgcgt tcgataaagg cgctggtttc
    18661 tgctcctgac gaggttttaa tttgcaggat ccccgcaggc gcgccatcac gctgacgaat
    18721 ggtcgctgac cagctttgcg cattttgaac ttctgcaccg tgcgaagatg acgcccagtg
    18781 tatcggcatc ccgttgcgca gtgcgaacag cgaaacatgc gattcgttga gaacagattc
    18841 gatgttacga caaatgattt cccccatttc atgaaatggc gggctgctgc acatggcggc
    18901 gagaatattg ccttcaagct ggcggatttg ccgttcttcg gtgatatccg agaaagtcat
    18961 taccaggttc tgcagatgcg cgagcacgtc ataaaccggg ctgatagagg ctttaatcca
    19021 gattttttca ccggtgcgcg tcaacagcag aaattcgtcc tgatcgcggg cggttttcca
    19081 tagcaactgt tgtaaacgaa tgcggttatc ggcagggaat tcaggaatgt tcaggagtgt
    19141 atcgggctgc ataccgctgg cttcgctaat gcagtaacca aacatttcgg taaatgcgcg
    19201 attgcactgc acaatatggc gttccggatc gaggacaatc accggtcggt cgagatggtc
    19261 aacggcaata atcaattgtc gggtctgttc tttttgcgcc atttctacgc tggcatcccg
    19321 taccagcgcc aggtaataaa ctttcccctc ggcgctcact ttcgatagcg caaaacgggt
    19381 ccagatttta ctgccgtctt ttttctccag ctgcagctcc cgactcatcc cctcgacgcg
    19441 cgctttacca ccttcacggt tatgacgaat gtattcagga tgcgcaggac gcaaatcccg
    19501 cggaatcagc atatcaatgt tattgccaat gacttcttca cgtttgtacc cccagagctt
    19561 ctctgcggcg gggttgaaaa acatcacttc atcattttcg ttaattaaca ccgcgcccat
    19621 catattttgt tcaagggcgg ggaaaaaaat gccatcggcg gcattttccg catcggttag
    19681 cttcatgatt acctctgcat cctggcgcat ctaaagactg gctttccaga gttcaacacg
    19741 gtttctacct cgtcttttgg cgatatacag agcttcatcg gctatttgaa tgaggcgctc
    19801 atagtcagga tgaccattaa acatggcggc accgatggaa agtgagaggg caatatcctc
    19861 gccgtttgcg gctttcagtt tggttttctc cacccgactg cgaatacgtt ctgcggtacg
    19921 taacgtttcg ttttcagaag cttcagtcaa aacaatgata aattcatcgc ccccgtagcg
    19981 aaaaacataa tcactactgc ggacgttgtc ataaaaggcc tgagagactt tacgcagaat
    20041 ttcatcgcca gtgttatggc cccacgtatc gttgatctct ttgaatttat caacgtcaat
    20101 aatcagcact gacagcggtg taccggtccg gttggcatgg gcaatttcgc gtttgaagat
    20161 agtcggcagg aagcggcggt taagtaattt cgtcagtaca tccataccga cttcgtggcg
    20221 cgatacttct tcaaacaatt cacgcagcaa ggtaataatt tgcgatacag tatttcttat
    20281 ctgtaataaa aatttcaccc gcagacttct gttattcaaa ttcctggtgt tacgcatggt
    20341 ttgattgaat ataccgtcga aatcctgaat cagacgggag atatgcctac ttcggcaatg
    20401 ccactaaaat aatgtcgacc tttatggtta aaccacaggc caaaatcagc ctggcttaaa
    20461 ggcaaactac tgcctaaatc agaatccagc aggattttat agataatatc tatttcccat
    20521 gaaagtattg aggctatttg ccgttctttt tcttcttcgg cgttttctag taacgagaag
    20581 atacgatagt tttcatcttc ctttgaggca ctactgtcac taaaggtaaa cgcgcgggtc
    20641 atcacttcca tagcgatatc aatactgtta atcgagaaat ggtagacctg aagtttttct
    20701 gcggcagaat aatccgaaga gaagattacc ggatagagga tttttttcag cacccgaaac
    20761 cccatctcga caatttctac cggaattcct atgcgggcat gcacttccgc gacggtatgc
    20821 tggatttgta ttagcctttc gacatcgtca acctgggcag aaagcacgtt aataatccag
    20881 cgttccatcg cacttttcaa ctgccgctca acttgttcat tactcaagaa ttcttcggca
    20941 tgcgggtcga tgcggacaat tcgataaaac tcgatactca gataatgagc atgcgcaacg
    21001 gcaatttccg cggctttagc acgaatgagt ggatctgcct gttcgacaag tccggtccac
    21061 tcatctttca ttcttttaaa atacatctcc ataattcaca cccttataag gctgggaaat
    21121 cagacggaat caaaacgcaa cgtgcgagat cgactaactg caccatattc tcctgaaata
    21181 tgaagatata ctgaaaagaa ataagcgact taggacagtt tcaatctacg ctactgttct
    21241 tcagaagagt atagcccatc gtaattattt ttcggtgaca gcgaatatcg tatggttttt
    21301 catattcata catttttatt agggatttat agctgtttaa ctaagtgtgg ttaattgcgt
    21361 ggttaatttg acttatgtaa gcatgattac tagtgggata tttcacaagg tgtaacaagc
    21421 cggtgggtaa agcaccggct tgttacaaag taagcatggg agtttaactg ccccaacgac
    21481 tttgcagata gctgaccgct tgttgagtct gcggtttatt cagatagtcc tcacggaaca
    21541 agatggtgcc gctaatttct ggtaccgcat cgttaagatc gagctgcttt ttcagttccg
    21601 gtacgccgcc gttaatcatc cagtctggct ctatctttga aggttcaccc actttataga
    21661 aggcgatacc gatatacagg cgggtcctgg tcggtttaac gacatccgcc caccattttg
    21721 ccaacacgtc ataacgcgcg gcactccgtg agaacggcca gtaaatttgg ggagcaatgt
    21781 aatccagcaa tccttgttcc acccatcgac gggtgtcagc gtaggattcg tcataggctg
    21841 ccgcgcctcg ggtatcggaa ccgagcggat cgtgtgatcg gttacgccac acgcctgccg
    21901 ggctaacgcc aaattcgact cccggcttaa tgcttttaat ggtgtgcgat acttttgtaa
    21961 ttaactgctg agtattgttg cgccgccagt ctgcttttga cgcaaatgcg cctccgtatt
    22021 tacggtacgt ttcgttatca tttagccgtg aacccggtga ctccgtatag aaatagtcgt
    22081 caaactgcac gccatctacc ggatagcggg aaaccacttc ggcgactatt gatgtgatcc
    22141 agtcctgaac ctcagggatg cccgggtcga ggacaaagcg atcgccagac gttctgatcc
    22201 agtcacggtg ttgcacatag acgctcgccg gttgttgaga cagagtgcta ttcagttccc
    22261 tgatagtacc gggcttcgta ttaaccgata cgcgataggg gttaaaccag gcgtgtactt
    22321 tcatcccacg cttgtgggct tcgtcgagca taaattgcag cggatcgtaa cccggatttt
    22381 caccaatctt accggtcata agatcggacc acggcaaaat ttttgatggc cacagggcgg
    22441 taccgtccgg cttgacctgg aaaaagaccg tgtttatacc gagacgttgc agatgatcca
    22501 gtttgtcgat catcgcctgt tgttgtacac gggcccggct ggtggggtta ctaatgttaa
    22561 ccgaggaaac cggtggccag tcgaggcgag acaccgtggc cagccagatg ccacgcatcg
    22621 gttgtgacga ttgttgcgtc gtggctggtg gctttgaacc tgctggtggt gtcaccatgg
    22681 actctggagg cgtgctttta caactacaca gtaaaagtgc cagtgcaacc agtatcgctg
    22741 gtcttctaat cgttaatttc ttgtttcggg agcagatatc catatgtgct ggtttccggt
    22801 aaacagatgt gcgctcattc tcgtacttat cccggttaag tcaatacgac agcaagcacg
    22861 aaaaagggag cgatgaatta tcgctccctt gtcttataac cattcagaca tggttagtgt
    22921 ttcttgtcat tcatcacaat atagtgtggt gaacgtgcac gcgggtgcag gaagaagtga
    22981 ccttttggtg cgttctgact gttgattggc tccagagtga cgccggtatt cgctttgcct
    23041 ttacgatcat gaacagcata gagaataaag ggcagggcaa gtaccaccag gaaactaacg
    23101 accagtaatt caacatacat atcggtagag tcaccctgga tgttatccgg cggcaggaag
    23161 gaaacaataa acgccataat tgaagtcagc agaccgacaa ttgccacgac cagtttcacc
    23221 cctttaccac cagggatatt aaatgtgcgt tttaagtcag gatgtttaag aaccaacaca
    23281 atgtagccaa taaacagcat gaaataagca cacagataaa tcaccaccgt cagcgccagt
    23341 gcgatcagga aggacatgtt gttaccgcca ccggtattgg tgaggatgat caacgcgata
    23401 gaagtaatca ccagctgcga aatgaccagc gttaccggta cgccattttt gttcatttta
    23461 gcgaatgccg ctggcagcag gtttttctgc gctgtgacat acatcccgcg agaaggacca
    23521 acaatccagg aggcgatttc cgccagaaca cccagcaaca gcagtgcgga gatcacgcga
    23581 accgtccact caatttccgg tgccacatgg gacatcagaa cggtaaaggt ttgcattacc
    23641 cctgcggaga ggttgatttc attacccgga atgaccatcg caatagataa accgccaaca
    23701 gagcttaagc agattgccgc caccatcagc agtaacatag ccagtggata gtcgcgcccg
    23761 gggttgctca tttcattgac gtgagttgcg gaagcttcta cgcccatata actcaaaatg
    23821 aaggcaacaa atacaaccag tgtgcccact ttagagaagt cagggaagaa ggtcttcgaa
    23881 tccatttcga tagcaacggg ggcaccggag tgcagataaa tagccgctaa tgcgatcaaa
    23941 ataaatgcag gtaacaggat accggcgaag aagccaactt tagcaattcg cgccgtgtat
    24001 ttcgtgccac caaactgcgt taatgccagc gcccaaagaa tgatgagtgc tgcaatagtt
    24061 ttggtaatgg ggtcttcatt cagcgctggc catttcagga tgtaggagag tgcccctaac
    24121 acgaaataga gcatcggaat aaaaccaatg gcgatttgca gatagccaaa tgagatcgct
    24181 gcaaatcccc atctcggccc cagagtattt gatacccagg cgaagacacc accttcttcc
    24241 cagccgtcga cggtggccat ttccgcagca caaagtccca cgggaataaa ccataaaatc
    24301 ccgcctaata gcaggaagaa gactaatgaa aagcccgatg ttgcgaaggt agggtattca
    24361 taaacagcca ttaccatcga tgccgttatg gcaaagaatc cgagtaatgt gagctgctta
    24421 gctttacctg tctgtactga tgtagccata ttatccccct aaaacggtat tcctgtcgga
    24481 accgcacctg ttttgttctg aagcgtattc agaacaatat tttccgttgc taatgccagt
    24541 gaacagactt tggaaattgt cccgaaacgg gttcgtttcg ggacaccgtt accgttaaac
    24601 gttatcaggt atgtttaaag ctgttctgct gggcaatacc ctgcagtttc gggtgatcgc
    24661 tgagatattt cagggaggct ttgtagtctt ccagcaacag ttcagcaaag tccatttcga
    24721 agccgcgacg acacataat
//
LOCUS       DAJVSY010000052        24059 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.052, whole genome shotgun sequence.
ACCESSION   DAJVSY010000052 DAJVSY010000000
VERSION     DAJVSY010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24059)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24059)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24059
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.052"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            322..549
                     /gene="feoA"
                     /locus_tag="OQQ19_001855"
     CDS             322..549
                     /gene="feoA"
                     /locus_tag="OQQ19_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transporter A"
                     /protein_id="HCS1803507.1"
                     /translation="MQYTPDTAWKITGFSREISPAYRQKLLSLGMLPGSSFNVVRVAP
                     LGDPIHIETRRVSLVLRKKDLALLEVEAVSC"
     gene            566..2887
                     /gene="feoB"
                     /locus_tag="OQQ19_001856"
     CDS             566..2887
                     /gene="feoB"
                     /locus_tag="OQQ19_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(2+) transporter permease subunit FeoB"
                     /protein_id="HCS1803508.1"
                     /translation="MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ
                     FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL
                     YLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALK
                     LAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAY
                     AGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVSNTLTAEPSRFTTAVDK
                     IVLNRFLGLPIFLFVMYLMFLLAINIGGALQPLFDVGSVALFVHGIQWIGYTLHFPDW
                     LTIFLAQGLGGGINTVLPLVPQIGMMYLFLSFLEDSGYMARAAFVMDRLMQALGLPGK
                     SFVPLIVGFGCNVPSVMGARTLDAPRERLMTIMMAPFMSCGARLAIFAVFAAAFFGQN
                     GALAVFSLYMLGIVMAVLTGLMLKYTIMRGEATPFVMELPVYHVPHVKSLIIQTWQRL
                     KGFVLRAGKVIIIVSIFLSAFNSFSLSGKIVDNINDSALASVSRVITPVFKPIGVHED
                     NWQATVGLFTGAMAKEVVVGTLNTLYTAENIQDEEFNPAEFNLGEELFSAIDETWQSL
                     KDTFSLSVLMNPIEASKGNGEMGTGAMGVMDQKFGSAAAAYSYLIFVLLYVPCISVMG
                     AIARESSRGWMGFSILWGLNIAYSLATLFYQVASYSQHPTYSLVCILAVILFNIVVIG
                     LLRRARSRVDIELLATRKSVSSCCAASTTGDCH"
     gene            2887..3123
                     /gene="feoC"
                     /locus_tag="OQQ19_001857"
     CDS             2887..3123
                     /gene="feoC"
                     /locus_tag="OQQ19_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[Fe-S]-dependent transcriptional repressor FeoC"
                     /protein_id="HCS1803509.1"
                     /translation="MASLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMG
                     KAVRIQEEPDGCLSGSCKSCPEGKACLREWWALR"
     gene            3326..4204
                     /gene="rpnA"
                     /locus_tag="OQQ19_001858"
     CDS             3326..4204
                     /gene="rpnA"
                     /locus_tag="OQQ19_001858"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnA"
                     /protein_id="HCS1803510.1"
                     /translation="MSKKQSSTPHDALFKLFLRQPDTARDFLAFHLPAPIHALCDMKT
                     LKLESSSFIDDDLRESYSDVLWSVKTEQGPGYIYCLIEHQSTSNKLIAFRMMRYAIAA
                     MQNHLDAGYKTLPMVVPLLFYHGIESPYPYSLCWLDCFADPKLARQLYASAFPLIDVT
                     VMPDDEIMQHRRMALLELIQKHIRQRDLMGLVEQMGCLLSSGYANDRQIKGLFNYILQ
                     TGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLTDI
                     MRFTGVSEEELAAASQ"
     gene            complement(4233..5003)
                     /gene="bioH"
                     /locus_tag="OQQ19_001859"
     CDS             complement(4233..5003)
                     /gene="bioH"
                     /locus_tag="OQQ19_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709189.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl ester esterase BioH"
                     /protein_id="HCS1803511.1"
                     /translation="MNNIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHL
                     VDLPGFGRSQGFGALSLADMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQAL
                     VTVASSPCFSARDDWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQDARA
                     LKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVPMPFLRLYGYLDGLVPRKVVPML
                     DKLWPRSKSYIFAKAAHAPFISHPVEFCHLLVALKQRV"
     gene            5041..5724
                     /gene="gntX"
                     /locus_tag="OQQ19_001860"
     CDS             5041..5724
                     /gene="gntX"
                     /locus_tag="OQQ19_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417872.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein GntX"
                     /protein_id="HCS1803512.1"
                     /translation="MLTVPGLCWLCRMPLALGHWGICSVCSRAARTDKTLCPQCGLPA
                     THSHLPCGRCLQKPPPWQRLVTVADYAPPLSPLIHQLKFSRRSEIASALSRLLLLEVL
                     HARRTTGLQLPDRIISVPLWQRRHWRRGFNQSDLLCQPLSRWLHCRWDSEAVTRTRAT
                     ATQHFLSARLRKRNLKNAFRLELPVQGRHMVIVDDVVTTGSTVAEIAQLLLRNGAATV
                     QVWCLCRTL"
     gene            5783..6358
                     /gene="nfuA"
                     /locus_tag="OQQ19_001861"
     CDS             5783..6358
                     /gene="nfuA"
                     /locus_tag="OQQ19_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016942932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S biogenesis protein NfuA"
                     /protein_id="HCS1803513.1"
                     /translation="MIRISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYC
                     PPDAVEATDTALKFDLLTAYVDELSAPYLEDAEIDFVTDQLGSQLTLKAPNAKMRKVA
                     DDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLK
                     EGIEKQLLNEFPELKGVRDLTEHQRGEHSYY"
     gene            6719..8035
                     /gene="gntT"
                     /locus_tag="OQQ19_001862"
     CDS             6719..8035
                     /gene="gntT"
                     /locus_tag="OQQ19_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate transporter"
                     /protein_id="HCS1803514.1"
                     /translation="MPLVIVAIGVILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLD
                     KVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVV
                     LTGFTVGFALFYEVGFVLMLPLVFTIAASANIPLLYVGVPMAAALSVTHGFLPPHPGP
                     TAIATIFNADMGKTLLYGTILAIPTVILAGPVYARVLKGIDKPIPEGLYSAKTFSEEE
                     MPSFGVSVWTSLVPVVLMAMRAIAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMFT
                     FGLNRGRSMDQINDTLVSSIKIIAMMLLIIGGGGAFKQVLVDSGVDKYIASMMHETNI
                     SPLLMAWSIAAVLRIALGSATVAAITAGGIAAPLIATTGVSPELMVIAVGSGSVIFSH
                     VNDPGFWLFKEYFNLTIGETIKSWSMLETIISVCGLVGCLLLNMVI"
     gene            complement(8080..10164)
                     /gene="malQ"
                     /locus_tag="OQQ19_001863"
     CDS             complement(8080..10164)
                     /gene="malQ"
                     /locus_tag="OQQ19_001863"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HCS1803515.1"
                     /translation="MESKRLDNAALAAGISPNYINAHGKPQSISAETKRRLLDAMHQR
                     TATKVAVTPVPNVMVYTSGKKMPMVVEGSGEYSWLLTTEEGTQYKGHVTGGKAFNLPT
                     KLPEGYHTLTLTQDDQRAHCRVIVAPKRCYEPQALLNKQKLWGACVQLYTLRSEKNWG
                     IGDFGDLKAMLVDVAKRGGSFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNA
                     VEDFHLSEEAQAWWQLPTTQQTLQQARDADWVDYSTVTALKMTALRMAWKGFAQRDDE
                     QMTAFRQFVAEQGDSLFWQAAFDALHAQQVKEDEMRWGWPAWPEMYQNVDSPEVRQFC
                     EEHRDDVDFYLWLQWLAYSQFAACWEISQGYEMPIGLYRDLAVGVAEGGAETWCDREL
                     YCLKASVGAPPDILGPLGQNWGLPPMDPHIITARAYEPFIELLRANMQNCGALRIDHV
                     MSMLRLWWIPYGETADQGAYVHYPVDDLLSILALESKRHRCMVIGEDLGTVPVEIVGK
                     LRSSGVYSYKVLYFENDHEKTFRAPKAYPEQSMAVAATHDLPTLRGYWESGDLTLGKT
                     LGLYPDEVVLRGLYQDRELAKQGLLDALHKYGCLPKRAGHKASLMSMTPTLNRGLQRY
                     IADSNSALLGLQPEDWLDMAEPVNIPGTSYQYKNWRRKLSATLETMFADDGVNKLLKD
                     LDRRRRAAAKKQ"
     gene            complement(10174..12567)
                     /gene="malP"
                     /locus_tag="OQQ19_001864"
     CDS             complement(10174..12567)
                     /gene="malP"
                     /locus_tag="OQQ19_001864"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin phosphorylase"
                     /protein_id="HCS1803516.1"
                     /translation="MSQPIFNDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALA
                     EMLRAQPFAKPVANQRHVNYISMEFLIGRLTGNNLLNLGWYQEVQDSLKAYDINLTDL
                     LEEEIDPALGNGGLGRLAACFLDSMATIGQSATGYGLNYQYGLFRQSFVDGKQVEAPD
                     DWHRSNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPL
                     RLWQATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQ
                     CACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAW
                     AITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEK
                     VWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTN
                     GITPRRWIKQCNPALAALLDKLLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANK
                     VRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVP
                     RVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLQDYCVSAAEKLIP
                     AADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVE
                     QVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSIGKQGGDPYL
                     VMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQAKR"
     gene            13179..15884
                     /gene="malT"
                     /locus_tag="OQQ19_001865"
                     /pseudo
     CDS             13179..15884
                     /gene="malT"
                     /locus_tag="OQQ19_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312287.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MalT"
     gene            complement(15927..16943)
                     /gene="rtcA"
                     /locus_tag="OQQ19_001866"
     CDS             complement(15927..16943)
                     /gene="rtcA"
                     /locus_tag="OQQ19_001866"
                     /EC_number="6.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 3'-terminal phosphate cyclase"
                     /protein_id="HCS1803517.1"
                     /translation="MKRMIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAK
                     PGLLRQHLTAVKAAAEICRATVEGAELGSQRLVFRPGAVRGGEYRFAIGSAGSCTLVL
                     QTVLPALWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQQTTLLRHGFY
                     PAGGGVVATEVSPVASFNTLQLGERGNIVQMRGEVLLAGVPRHVAEREIATLAGSFSL
                     HEQNIHNLPRDQGPGNTVSLEVESENITERFFVVGEKRVSAEVVAAQLVKEVKRYLAS
                     PAAVGEYLADQLVLPMALAGAGEFTVAHPSCHLLTNIAVVERFLPVRFGLIEIDGVTR
                     VSIE"
     gene            complement(16947..18173)
                     /gene="rtcB"
                     /locus_tag="OQQ19_001867"
     CDS             complement(16947..18173)
                     /gene="rtcB"
                     /locus_tag="OQQ19_001867"
                     /EC_number="6.5.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-splicing ligase RtcB"
                     /protein_id="HCS1803518.1"
                     /translation="MNYELLTTENAPVKMWTKGVPVEADARQQLINTAKMPFIFKHIA
                     VMPDVHLGKDSTIGSVIPTKGAIIPAAVGVDIGCGMNALRTALTAEDLPENLAELRQA
                     IETAVPHGRTTGRCKRDKGAWENPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHL
                     GTLGTGNHFIKICLDESDQVWIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRD
                     LAYFMEGTEYFDDYLKAVAWAQLFASLNRDVMMENVVTALQSITQKTVRQPQTLAMEE
                     INCHHNYVQKEQHFGEEIYVTRKGAVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCS
                     CSHGAGRVMSRTKAKKLFSVEDQIRATAHVECRKDAEVIDEIPMAYKDIDAVMTAQSD
                     LVEVIYTLRQVVCVKG"
     gene            18362..19960
                     /gene="rtcR"
                     /locus_tag="OQQ19_001868"
     CDS             18362..19960
                     /gene="rtcR"
                     /locus_tag="OQQ19_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator RtcR"
                     /protein_id="HCS1803519.1"
                     /translation="MRKTVAFGFVGTVLDYAGRGSQRWSKWHPTLCLCQQESLVIDRL
                     ELLHDARSCSLFETLKRDIASVSPETEVVSIEIELHNPWDFEEVYACLHDFARGYKFQ
                     PEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQTSPPRKKEQPRGAGEVTIIDLD
                     LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG
                     AGKSFLARRIFELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREG
                     LLRSANGGMLFFDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL
                     RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHATLTGDSVRFNTE
                     ARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQES
                     RPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSATGRQLFDVSRQGKASVNDA
                     DRLRKYLARFGLTWEAVQDQHSSS"
     gene            complement(19942..20700)
                     /locus_tag="OQQ19_001869"
     CDS             complement(19942..20700)
                     /locus_tag="OQQ19_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000815090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family transcriptional regulator"
                     /protein_id="HCS1803520.1"
                     /translation="MKQTQRHNGIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNELA
                     EQNLILRHHGGAALPSSSVNTPWHDRKATQTEEKERIARKVAEQIPNGSTLFIDIGTT
                     PEAVAHALLNHSNLRIVTNNLNVANTLMVKEDFRIILAGGELRSRDGGIIGEATLDFI
                     SQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVN
                     MGSISMVDAVYTDAPPPVSVMQVLTDHHIQLELC"
     gene            complement(20717..21547)
                     /gene="glpG"
                     /locus_tag="OQQ19_001870"
     CDS             complement(20717..21547)
                     /gene="glpG"
                     /locus_tag="OQQ19_001870"
                     /EC_number="3.4.21.105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease
                     GlpG"
                     /protein_id="HCS1803521.1"
                     /translation="MLMITSFANPRVAQAFVDYMATQGVILTIQQHNQSDVWLADESQ
                     AERVRAELARFLENPADPRYLAASWQAGHTGSGLHYRRYPFFAALRERAGPVTWVVMI
                     ACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWY
                     LGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERD
                     PQSGIYLQRGLIIFALIWIIAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSLNARKRK
                     "
     gene            complement(21592..21918)
                     /gene="glpE"
                     /locus_tag="OQQ19_001871"
     CDS             complement(21592..21918)
                     /gene="glpE"
                     /locus_tag="OQQ19_001871"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase GlpE"
                     /protein_id="HCS1803522.1"
                     /translation="MDLFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLT
                     NDTLGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPA
                     EVAYGA"
     gene            22108..23613
                     /gene="glpD"
                     /locus_tag="OQQ19_001872"
     CDS             22108..23613
                     /gene="glpD"
                     /locus_tag="OQQ19_001872"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase"
                     /protein_id="HCS1803523.1"
                     /translation="METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSA
                     SSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIR
                     IGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVV
                     RKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDEGM
                     HLPSPYGIRLIKGSHIVVPRVHTQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYK
                     GDPKAVKIEESEINYLLKVYNAHFKKQLSRDDIVWTYSGVRPLCDDESDSPQAITRDY
                     TLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPYYQGIGPAWTKESVLPGGAIE
                     GDRDDYAARLRRRYPFLTESLARHYARTYGSNSELLLGNAGAISDLGEDFGHEFYEAE
                     LKYLVDHEWVRRTDDALWRRTKQGMWLNADQQSRVSQWLVEYTQQKLSLAS"
     gene            complement(23665..>24059)
                     /locus_tag="OQQ19_001873"
     CDS             complement(23665..>24059)
                     /locus_tag="OQQ19_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000589351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803524.1"
                     /translation="VMAGIGWQFSRRTPPELKNRLHCWLVFSPVYFWLILSNFILYIS
                     PEKSALLENIRNFFLTFVWPPLNFSPFWPQPWTDFVGPISAQLGFALGYYCHWCRKNR
                     NQRKKWGDWVTCLSLAILAQGPLFNYLQ"
BASE COUNT         5656 a         6552 c         6081 g         5770 t
ORIGIN      
        1 caaactcata atatattccg gcaatattta tcacttcatt aacaactgaa accttaatta
       61 aacattagcc agtccgggta attcactatt cgaattatat tttcgctgcg atataacctt
      121 gagccacatc aacattgagt cagattatta ttcaaaccaa cattcgcaca cattttaagt
      181 attgctgata gaaaccattc tcattatcat tgtgttattg attatttaat ctctcctttg
      241 ttggcaaatc atctggtctc atgtcgctgt caaacgcccc atgaggtagt tatccagtta
      301 atgagaaaca agtaggcacc tatgcaatac actccagata ctgcgtggaa aatcactggc
      361 ttttcccgtg aaatcagccc ggcatatcgc caaaaactgc tttctcttgg catgttacct
      421 ggctcctctt ttaatgtggt gcgcgtcgct ccactcggcg accccattca tatcgaaacc
      481 cgtcgtgtga gcctggtatt acgcaaaaaa gatctggcct tattagaagt ggaagcggtt
      541 tcctgttaat acggtgataa caacaatgaa aaaattaacc ataggcttaa ttggtaatcc
      601 aaattctggc aagacaacct tatttaacca gctcactggc gcacgtcagc gtgtaggtaa
      661 ctgggctggc gttaccgtcg aacgtaaaga agggcaattc tccaccaccg atcatcaggt
      721 cacgctggtg gacctacccg gcacctattc tctgaccacc atctcatcgc agacctcgct
      781 cgatgagcaa atcgcctgtc actacatttt gagtggcgac gccgacctgc tgattaacgt
      841 ggtggatgcg tctaaccttg agcgtaacct gtacctgacg ctacaactgc tggaactcgg
      901 cattccctgc attgtggcac tgaacatgct cgacattgcc gagaagcaaa atattcgtat
      961 tgaaattgat gctctgtcgg cgcgtctggg ctgtccggtg atcccgctgg tttcaacccg
     1021 tggtcgcggt attgaagcgc tcaagctggc gattgatcgc tataaagcta acgagaatgt
     1081 ggaactggtg cattacgcac agccgctgct caacgaagca gattcactgg caaaagtgat
     1141 gccttccgac atcccgctga aacaacgtcg ctggctgggc ctgcaaatgc tggaaggcga
     1201 tatctacagc cgcgcctacg ccggtgaagc gtcgcagcat ctggatgccg ccctcgcccg
     1261 tctgcgtaat gagatggacg atccggcgct gcacattgcc gatgcgcgtt accagtgcat
     1321 tgctgccatc tgtgatgtgg taagcaacac cctgacggca gaacccagcc gtttcaccac
     1381 tgcggtagat aaaatcgtgc tcaaccgttt cctcggtctg ccgattttcc tctttgtgat
     1441 gtacctgatg ttcctgctgg ctatcaacat cggcggggcg ttacagccgc tgtttgacgt
     1501 cggctccgtg gcgctatttg tgcatggtat tcaatggatt ggctacacgc tccacttccc
     1561 ggactggctg actatcttcc tcgcccaggg cctgggtggc ggcattaaca ccgtgctgcc
     1621 actggtgccg cagattggca tgatgtacct gttcctctcc ttccttgagg actccgggta
     1681 tatggcgcgt gcggcgtttg tgatggaccg tctgatgcag gcgctgggct tgccggggaa
     1741 atcctttgtg ccgctgatcg tcggtttcgg ttgtaacgta ccgtcggtaa tgggtgcacg
     1801 tacgcttgat gcaccgcgtg aacgtctgat gaccatcatg atggcaccgt ttatgtcctg
     1861 cggcgcgcgt ctggctatct tcgcagtatt cgcggctgcc ttcttcgggc agaacggtgc
     1921 gctggcggtc ttctcgctgt atatgctggg tattgtgatg gcggtgctga ctggcctgat
     1981 gctcaagtac accatcatgc gcggtgaagc gacgccgttt gtcatggagt tgccggtcta
     2041 tcatgtacca cacgttaaaa gcctgattat ccagacctgg cagcgtctga aaggcttcgt
     2101 tctgcgtgct ggtaaagtga tcatcatcgt cagcattttc ctgagcgctt tcaacagctt
     2161 ctcgctgagc gggaaaatcg tcgataacat caacgactcg gcgctggcgt ccgtcagccg
     2221 ggtgatcacc ccggtcttca agccaattgg cgtgcatgaa gataactggc aggcaacggt
     2281 tggcctgttt acaggtgcca tggcgaaaga agtggtagtg ggtacgctca acaccctcta
     2341 caccgcagaa aatattcagg acgaagagtt caatccggca gagtttaacc tcggtgaaga
     2401 gctgttcagt gcgatagatg aaacctggca gagcctgaaa gacaccttca gccttagcgt
     2461 actgatgaac cccattgaag ccagcaaagg caacggcgaa atgggtaccg gggcgatggg
     2521 cgtgatggat cagaaattcg gtagcgcagc agcagcttac agctacctga ttttcgtcct
     2581 gctgtatgta ccatgtatct cggtgatggg agccatcgcc cgtgaatcaa gccgtggctg
     2641 gatgggcttc tccatcctgt gggggctgaa tatcgcttac tcgctggcaa cattgttcta
     2701 tcaggtcgcc agctacagtc agcacccaac ttacagcctg gtgtgcattc tggcggttat
     2761 cctgtttaac atcgtggtta tcggtctgct gcgccgcgcg cgtagccggg tggatatcga
     2821 actgctggca acccgcaagt cggtaagcag ttgctgcgca gccagcacca ccggtgattg
     2881 ccattaatgg cttcacttat tcaggtgcgc gatttgctgg cgttacgggg ccgtatggaa
     2941 gcggcccaga taagccagac attgaacact ccacagccaa tgattaacgc catgctgcaa
     3001 caactggaaa gtatgggcaa agccgtgcgg attcaggaag aacctgacgg ctgcctctct
     3061 ggcagttgta aaagctgccc ggaaggaaaa gcctgtctgc gcgagtggtg ggcgcttcgt
     3121 taaccttact ccatcgcctg ttttggaaag cccggtatgc gtcggcatcc gggctttttt
     3181 gcgtgcggct ttccataaaa atgcaactct tgcagcacgg cgtaagttcc tttgaaagca
     3241 tctcgcaggg atgaaaactc gctaatacac aggtgtggag tggcgcgtag agtcgcggca
     3301 ttcaaacaac aggtgaagga acgccatgag caaaaagcag agttccaccc cacacgatgc
     3361 gctgttcaaa ctctttttac gccaaccgga cacggctcgt gattttcttg cgtttcattt
     3421 accggcaccc attcacgcgc tttgtgatat gaaaaccctc aagctggagt cgagcagctt
     3481 tattgatgac gatctgcgtg aaagctattc cgatgtgctg tggtcggtga aaacggaaca
     3541 aggaccagga tacatctatt gtctgattga acatcaaagc acctcaaaca aactgatcgc
     3601 atttcgcatg atgcgttacg ctattgccgc aatgcaaaat caccttgatg ctggatacaa
     3661 aacgttgccg atggtggtgc cattgttgtt ttaccacggt attgaaagcc cctatcccta
     3721 ttcgctgtgt tggctggatt gtttcgccga tcccaaactg gcaaggcagc tttatgcctc
     3781 cgcatttccg ctgattgatg tcaccgtcat gcctgatgat gaaatcatgc agcaccgacg
     3841 tatggcgctg ctggagttaa ttcaaaaaca tattcgtcaa cgcgacctga tggggctagt
     3901 agagcaaatg ggctgcttat taagtagtgg atacgctaat gacagacaaa tcaaagggct
     3961 gtttaattac atactgcaaa ccggcgacgc ggtacgtttt aacgatttta tcgacggcgt
     4021 tgccgaacgt tcaccgaaac acaaggagag tttaatgaca attgcggaaa gattgcggca
     4081 ggagggggaa caatccaaag ccctgcatat agccaaaata atgcttgaat ccggagtccc
     4141 tcttacagac atcatgcgct ttaccggggt gtcagaagaa gagttggctg cggcgagcca
     4201 gtaaatttct gtctcgccat ttcaaaagtt gcctacaccc tctgcttcaa cgccaccagc
     4261 aggtgacaaa actcgaccgg atgcgaaata aacggcgcat gggccgcttt ggcgaagata
     4321 tatgatttgc tgcgaggcca gagtttatcc agcatcggca ccactttgcg cggcaccaga
     4381 ccatcgagat agccatacaa tcgcaaaaac ggcatgggca cgttttgcag cggctgacgg
     4441 agatcaaccg ttttcaggat ttccagcccg ccattaagca cgtcaacctc cggcatcggt
     4501 aacgccagaa cggttttctt caacgcccgc gcatcctggc gcgccgtttc agtccccatg
     4561 gtttgtaacg ccaggaaccg ctccactgta cgctgaaaat catcactgag ttgctgctga
     4621 aatcccgcca gcacgtccgg ttttatcccc ggccaatcgt cacgagcact aaaacaaggt
     4681 gacgacgcca cggtgaccag cgcctgaaca cgctcgggat gggttaacgc aatctggctt
     4741 gccaccagcc cgcccagact ccagcctaac caaatggctt tatcaggtgc ctgttgcagc
     4801 acggcttcgg ccatatcagc aagtgacagc gcaccaaatc cctggctgcg cccgaagccg
     4861 ggcagatcaa caaggtgcag cgtaaaatgc gagctaagtt cctcgtcaat gcaacgccac
     4921 acttcggcat tcagtcccca tccgtgcagc agcacaagat gaacattccc ctgacctttg
     4981 gtctgccacc agatgttatt catccgctat tgttctcttt tgacttacaa ggatgaacat
     5041 atgctaacag taccgggatt atgctggcta tgccgaatgc cgctggcgtt aggtcattgg
     5101 gggatttgtt cggtctgctc acgcgccgcc cgtacagata aaacgttatg cccacaatgt
     5161 ggattacccg ccacacactc acatcttccc tgcggtcgct gcctgcaaaa accaccgccc
     5221 tggcaaagac tggtcacggt tgccgactat gcgccgccgt taagtccgct tatccaccag
     5281 cttaaatttt cccggcgcag tgaaatcgcc agcgccctgt cacgtctgtt actattggaa
     5341 gtcttacacg ctcgtcgcac caccgggttg caattgccgg atcgcatcat cagcgttccg
     5401 ttatggcagc ggcgtcactg gcgtcgggga tttaatcaga gcgatttgct gtgtcagccg
     5461 ttatcacgct ggttgcactg ccgatgggat agcgaagccg tcacacgaac acgggccact
     5521 gcgacccagc attttctcag tgcccggcta cgcaagcgca acctgaaaaa tgcctttcgt
     5581 cttgaattgc ccgtgcaagg tcgccatatg gtgattgtgg atgatgtcgt taccaccgga
     5641 agtaccgtcg cagagattgc gcagttgctt ttacgcaatg gtgcggcgac tgtccaggtc
     5701 tggtgccttt gtcgaacctt gtagagcctc gatgataggc gtattataac caactaaaat
     5761 agtcaactat taggccatta ctatgatccg tatttccgat gctgcacaag cgcactttgc
     5821 caaactgctg gcaaaccagg aagaagggac acaaatccgc gtatttgtga ttaaccctgg
     5881 cacgcctaac gctgaatgtg gtgtttctta ttgtccgccg gatgccgtgg aagccaccga
     5941 cactgccctg aaatttgacc tgctgaccgc gtatgttgat gagttaagcg ctccttacct
     6001 ggaagatgca gagatcgatt ttgttaccga ccagttgggt tctcagctaa cactgaaagc
     6061 gcctaacgcc aaaatgcgta aagtggcaga cgatgcacca ctgatggagc gcgtggagta
     6121 tatgctgcag tcgcagatca acccacagct tgctggtcac ggtggccgcg tttcactgat
     6181 ggaaatcacc gaagacggtt acgccattct gcaatttggc ggcggctgta acggttgttc
     6241 catggtcgat gtgacgctga aagaagggat cgagaagcag ctgctaaacg aattcccgga
     6301 gctgaaaggt gtgcgcgatc tcaccgaaca ccagcgcggc gaacactcct actactaagt
     6361 tatcccctct tttgtagatt gcccgatgcg acgctaaagc gtcatttcgg gcctacgttg
     6421 aacatgtgcc agacgttggc gcagcattgc tttggcaaat ccctcccttc gtttctccgc
     6481 gataatatga ccaacctctc ataatttaaa tttactccgc tctggtgatt ctcaaacgcc
     6541 agatgttacc ggtatcattc acatgggtac caaacatact cctgacatct gactacaata
     6601 attagtttta gtgggtatca gtcgtggtgc cgcaatatct ctgttcccga ttgggataat
     6661 tagagtttgt cgtcagaaaa ttgacgttac ccataacaaa tgaaaggcca ggtaaatcat
     6721 gccattagtc attgttgcta tcggtgtaat cttgttgttg ctcctgatga tccgtttcaa
     6781 aatgaacggc ttcatcgctc tcgtcctcgt ggcgcttgct gttggattaa tgcaagggat
     6841 gccgctggat aaagttattg gctccatcaa agccggtgtc ggcgggacgc tcggtagcct
     6901 tgccctgatc atgggttttg gcgcgatgct gggcaaaatg ctggcagact gcggtggcgc
     6961 acaacgtatc gccaccaccc tgattgccaa atttggtaaa aaacacatcc agtgggcggt
     7021 ggtactgacc ggttttaccg ttggttttgc cctgttctat gaagtgggct ttgtgctgat
     7081 gctgccgctg gtgtttacca tcgcggcttc tgcgaatatt ccactgctgt atgttggtgt
     7141 accaatggca gctgcactgt ctgtgaccca cggcttcctg ccaccgcatc cgggtccgac
     7201 tgcgattgcc accattttca atgccgacat gggtaaaacc ctgctgtacg gtactattct
     7261 ggcaatcccg accgtgattc tcgccggtcc ggtttacgct cgcgtgttga aaggtatcga
     7321 taagccgatc cctgaaggtc tgtacagcgc gaaaaccttc agcgaagaag agatgccgag
     7381 ctttggcgtc agcgtctgga cctctctggt gccggtagtg ctgatggcga tgcgtgcgat
     7441 tgccgaaatg atcctgccga aaggtcacgc tttcctgccg gtagcggagt tcctcggtga
     7501 cccggtaatg gctacgctga ttgccgtgct gattgcgatg ttcacctttg gtctgaaccg
     7561 tggtcgttca atggatcaga ttaacgacac gctggtttct tccatcaaaa tcattgcgat
     7621 gatgctgttg atcatcggtg gtggcggtgc gttcaagcag gtgctggtag acagcggcgt
     7681 ggacaaatac attgcttcca tgatgcacga aaccaacatt tctccgctgc tgatggcctg
     7741 gtcgattgct gccgtactgc gtatcgcgct gggttccgca accgttgcgg caatcactgc
     7801 gggtggtatc gcggcaccgc tgattgcaac gacgggtgtt agcccggagc tgatggttat
     7861 tgcggtgggt tccggtagtg tgattttctc tcatgtgaac gatccgggct tctggctgtt
     7921 caaagagtac tttaacctga ctatcggcga gaccatcaaa tcctggtcga tgctggaaac
     7981 cattatctcg gtgtgcggtc tggtaggctg tctgctgctg aatatggtga tttgataaca
     8041 ctgactgccg gatgcatcgc atccggcatc aaccgcactc tactgcttct tcgctgcagc
     8101 tctgcgccgt ctgtccaaat ccttcagcaa cttattcacg ccatcatcgg caaacatcgt
     8161 ctcaagcgtt gcggaaagct tgcgtcgcca gtttttatac tggtaactgg tgccaggaat
     8221 attcaccggt tcggccatat ccagccagtc ttccggctgt agtcctaaca gagcactgtt
     8281 actgtcggca atgtagcgct gcaaaccacg attaagcgtc ggcgtcatcg acatcaacga
     8341 tgccttatgc ccggcacgtt ttggcagaca accatattta tgcagtgcat ccagcagccc
     8401 ttgcttcgcc agttcgcgat cctgatacag accgcgcagt accacttcat ccggatacag
     8461 ccccagggtt ttgcccaacg ttagatcccc gctctcccag taaccgcgca gcgtaggcag
     8521 gtcatgtgtc gccgcaaccg ccatcgactg ctccggatac gctttcggtg cacggaacgt
     8581 cttctcgtgg tcgttttcga aatagagcac tttgtaggag tacacaccgc tgctgcgcag
     8641 cttaccgaca atctctaccg gtacggtacc gagatcttca ccaatcacca tacagcgatg
     8701 acgtttactt tcgagtgcca gaatcgagag cagatcatcc accggatagt gaacatacgc
     8761 gccctgatct gccgtctcgc catacggtat ccaccacaaa cgcagcatcg acatcacatg
     8821 gtcaattcgt aatgcgccgc agttttgcat attggcacgc aacagctcga taaacggttc
     8881 ataggcacgc gcggtgatga tatgcgggtc cattggcggt aatccccagt tctgccccaa
     8941 cgggccgagg atatccggcg gcgcgccaac cgacgctttc aggcaatata gttcacggtc
     9001 acaccaggtt tccgccccac cttccgctac gccaaccgcc agatcacgat acaagccaat
     9061 cggcatttca tagccctggc ttatctccca gcaggcggca aactggctgt aagccagcca
     9121 ctgcaaccag agataaaaat cgacgtcatc acgatgttct tcgcagaact gacgcacttc
     9181 tggtgaatcc acgttctgat acatctctgg ccatgcaggc cagccccagc gcatttcgtc
     9241 ctctttcact tgctgggcat gtagcgcatc aaaggctgcc tgccagaaca ggctgtcgcc
     9301 ctgctctgca acaaactggc gaaacgcggt catctgctca tcatcacgtt gcgcgaaacc
     9361 tttccacgcc attcgtaatg ctgtcatttt tagggcggta accgtggagt aatcgaccca
     9421 gtcggcatcg cgcgcctgtt gcagcgtctg ttgcgtggtc ggcaactgcc accaggcctg
     9481 agcctcttcg ctaagatgga aatcttcaac ggcgttaacg tcgatataaa tcacattcag
     9541 ccaacggcga gaagacggac tgtatgggct ggcactctcc ggatttgccg gatagagcgc
     9601 atgaatcggg ttcaggccga tgaacgaccc gccacgtttt gccacatcca ccagcatcgc
     9661 tttgagatcg ccaaaatccc caatacccca gtttttttcc gatcgcagcg tataaagctg
     9721 aacgcaggca ccccacagct tttgtttatt cagcaacgcc tgcggttcgt aacagcgttt
     9781 cggggcgaca atcacccggc aatgcgcgcg ctggtcgtcc tgggtgagtg tcagcgtgtg
     9841 ataaccttcc ggcagcttcg tcggtagatt gaacgctttg ccccccgtta catggccttt
     9901 gtactgtgtt ccttcttcgg tggtcagcag ccagctatat tcgccgctgc cctccaccac
     9961 catcggcatt tttttgccgc tggtataaac catgacattc gggactggcg ttaccgccac
    10021 tttcgtggcg gtacgttgat gcatcgcgtc aagcaaacgc cgtttggttt cggcgctaat
    10081 cgactgcggt ttaccgtggg cattgatgta attggggcta atccccgccg ccagcgcggc
    10141 attatccaga cgtttgcttt ccatcgagct tccttagcgt tttgcctgcc agatacgagc
    10201 ctgataatcg cgaatagagc gatccgagct aaacataccg cagcgggcgg tattgaggat
    10261 cgccgcgcga gtccaggcct cctggtcgcg gtacagcaca tccacctgct tttgtgcctc
    10321 aacataggct gcgaaatccg ccatcaccag atacggatcg ccgccttgtt tgccgatact
    10381 gtgcagcatc tggtcgaagg catgcttatc gccgtcgctg tatttaccgc tttccagctc
    10441 tttcaatact gcgtccagca ccttatcttt cttccgccat ttcaccgggt cgtagccttt
    10501 ggccagaatt gccttcactt gttccacggt atgaccaaaa ataaagatat tttcttcacc
    10561 gactttctcg gcgatttcaa cgttcgcacc atccagcgta ccgacagtaa gcgcaccatt
    10621 gagcgccagt ttcatattgc cggtaccgga agcttcttta cctgcagtcg aaatttgttc
    10681 ggagatatcc gccgccggga tcagtttttc cgccgccgaa acgcaataat cctgcaggaa
    10741 caccaccttc aacttatcgc caaccagtgg atcgttgttg atcacgtcag ccactttgtt
    10801 gatcgcaaag ataatattct tcgccaggta gtagcccggt gccgctttcg cgccgaagag
    10861 gaagacgcgc ggtacgcgat cagcctgcgg gttttcacga atttctttgt acaacgccag
    10921 aatatgcagc agattcaggt gctggcgttt gtactcatgc agacgtttaa tctgaatatc
    10981 gaaaatcgcc tgtggattga tctcaatacc ggtacgaact ttcacaaact ccgccagacg
    11041 gactttattc gcctgcttga tctcgcgata ttgctgacgg aatttcgcat catcagcgaa
    11101 tttttccaga ttgatcagct gatcgagatc gttagcccac tctttttgca gtaatttatc
    11161 caacagagcc gccagtgcag ggttgcactg tttgatccag cgacgtgggg taataccgtt
    11221 ggtgacgtta tggaatttgt tcggccatag ctggtgatat tccgggaaca gatctttcac
    11281 caccagatcc gagtgcagcg ccgcaacacc gttcaccgcg aaaccgccaa ccacacacag
    11341 gttcgccata tgcacttgtt tatcgtgcac caccgccagt ttggcccaca ctttttcatc
    11401 gcccggccag gttttctcca ccagcgtttt aaagcgagta ttaatttcgt taataatctg
    11461 catatggcgc ggcagtaagc ctttcaccag tttcacatcc cagcgttcca gcgcttctgg
    11521 catcagggta tggttggtgt aagcgaaagt tttgctggta atggcccagg cgtcatccca
    11581 gctcatctgg tgctcatcga tcagcacgcg cagcagttct ggaatcgcga tagttgggtg
    11641 ggtatcgttc agctgaataa cttcataatc cgccagttcg tgcagtttac gccccgccag
    11701 atgatggcga cgcaaaatat ccgctaccga acaggcacac tggaagtact gctgcatcaa
    11761 gcgcagcttt ttaccggcag tatggttgtc gtttggatag agaactttgg tcagtttttc
    11821 cgcattgatg ccctgctgtt cggcacgcag gaaatcaccg tcgttaaatt tagtcagatc
    11881 aaacggatgc gcgtgcgtcg cctgccacag acgcagcggc tgcgccacgc cattacgata
    11941 gccgacaacg gggagatccc acgcttgacc ggtaatggta aactccggct cccagcgtcc
    12001 gtctttcgtc actttaccgc caatccctac ctgcacatcc agtgcttcgt tgtggcggaa
    12061 ccacgggtag ttactgcgat gccagtcatc cggcgcttca acctgtttgc catcgacaaa
    12121 agactggcgg aacaaaccat attgatagtt cagaccgtaa cccgtcgcag actgaccgat
    12181 agttgccatt gagtcgagga agcacgccgc cagacgtccc agaccaccgt tacccagcgc
    12241 cgggtcgatc tcttcttcca gcaggtccgt cagattgatg tcataagcct tcaacgaatc
    12301 ctgtacttcc tgataccagc cgagattcaa caggttgttg cccgtcaggc gaccaatcaa
    12361 aaactccatt gagatgtagt taacatgtcg ctgattcgcc accggcttgg cgaatggctg
    12421 agcacgcagc atttcggcca gtgcttcact cactgctagc caccactggc gaggagtcat
    12481 ttcagccgca gaatttaagc cataacgctg ccactgacgt gaaagcgctt cctgaaattg
    12541 cttatcgtta aaaataggtt gtgacatagg agttccactt ttcttagatt ttcaacacaa
    12601 cgttatcgct agtttgccag gctcgatgtt gaccttcctc atcctgcggg ggattaggca
    12661 gggaggagtt gcggggatga gcaaggaaat gtgatctcaa ccacttaaag ctagtgcaaa
    12721 ccacaggatt agcagcaaat caatgcaata cagcgcagaa aatctgtatc taagtgcaaa
    12781 aaatggccgt tgcgtatttt caaaaagcgg aaggtaactc tataaattaa gtaaaggagt
    12841 gaaacagttt cacaagtaaa atatccagtg tgctccatct cattcttaat agatttatta
    12901 agatcatctt tttagatggc actttcatca ggaatgaaga agaaaccctt gcttaaatga
    12961 atctgatgaa cataagggaa accagtattc acgctggatc agcgtcgttt taggtgagtt
    13021 gttaataaag atttggaatt gtgacacagt gcaaattcag acacataaaa aaacgtcatc
    13081 gcttgcatta gaaaggtttc tggccgacct tataaccatt aattacgaag cgcaaaaaaa
    13141 ataatatttc ctcattttcc acagtgaagt gattaactat gctgattccg tcaaaactaa
    13201 gtcgtccggt tcgactcgac cataccgtgg ttcgtgagcg cctgctggct aaactttccg
    13261 gcgcgaacaa cttccggctg gcgctgatca cgagtcctgc gggctacgga aagaccaccc
    13321 tcatttccca gtgggcggca ggcaaaaacg atatcggctg gtactcgctg gatgaaggtg
    13381 ataaccagca agagcgtttc gccagctatc tcattgccac cgtgcagcag gcaaccaacg
    13441 gtcactgtgc gatatgtgag acgatggcgc aaaaacggca atatgccagc ctgacgtcac
    13501 tcttcgccca gcttttcatt gagctggcgg aatggcatag cccactttat ctggtcatcg
    13561 atgactatca tctgatcact aatccagtga tccacgagtc aatgcgcttc tttattcgcc
    13621 atcaaccaga aaatctcacc ctggtggtgt tgtcacgcaa ccttccgcaa ctgggcattg
    13681 ccaatctgcg tgttcgtgac caactgctgg aaattggcag tcagcaactg gcatttaccc
    13741 atcaggaagc gaagcagttt tttgattgcc gtctgtcatc gccgattgaa gccgcagaaa
    13801 gcagtcggat ttgcgatgac gtttccggtt gggcgacggc actacagcta atcgccctct
    13861 ccgcccggca gaatacccac tcagcccata agtcggcacg ccgcctggcg ggaatcaatg
    13921 ccagccatct ttcggattat ctggtcgatg aggttttgga taacgtcgat ctcgcaacgc
    13981 gccattttct gttgaaaagc gccattttgc gctcaatgaa cgatgcgctc atcacccgtg
    14041 tgaccggcga agaaaacggg caaatgcgtc tcgaagagat tgagcgtcag gggctgtttt
    14101 tacagcggat ggatgatacc ggcgagtggt tctgctatca cccgctgttt ggcaacttcc
    14161 tgcgccagcg ctgccagtgg gaactggcgg cggagctgcc ggaaatccac cgtgccgccg
    14221 cagaaagctg gatggcccag ggatttccca gcgaagcgat tcatcatgcg ctggcggcag
    14281 gcgatgcgct gatgctgcgc gatattctgc ttaatcacgc ctggagtttg ttcaaccata
    14341 gcgaactgtc gctgctggaa gagtcgctta aggccctgcc gtgggacagt ttgctggaaa
    14401 atccgcagtt agtgttattg caggcgtggc taatgcaaag ccaacatcgc tatggcgaag
    14461 ttaacaccct gctagcccgt gctgaacatg aaatcaagga catcagagaa ggcaccatgc
    14521 acgcagaatt taacgctctg cgcgcccagg tggcgattaa cgatggtaat ccggatgaag
    14581 cggaacggct ggcaaaactg gcactggaag agctgccacc gggctggttc tatagccgca
    14641 ttgtggcaac ctcggtgctg ggtgaagtgc tgcactgcaa aggcgaattg acccgctcac
    14701 tggcgctaat gcagcaaacc gaacagatgg cacgccagca cgacgtctgg cactacgcct
    14761 tatggagttt aatccagcaa agtgaaattc tgtttgccca agggttcctg caaaccgcgt
    14821 gggaaacaca ggaaaaagcg ttccagctga tcaacgagca gcatctggaa cagctgccga
    14881 tgcatgagtt tctggtgcgc atccgagcac aactgttatg ggcctgggca cggctggatg
    14941 aagccgaagc gtcggcgcgt agcgggattg aagtcttgtc gtcttatcag ccacagcaac
    15001 agcttcagtg cctggcaatg ttgattcaat gctagctggc ccgtggtgat ttagataacg
    15061 cccgtagcca gctgaaccgt ctggaaaacc tgctggggaa tggcaaatat cacagcgact
    15121 ggatctctaa cgccaacaaa gtccgggtga tttactggca aatgaccggc gataaagccg
    15181 ccgctgccaa ctggttgcgt catacggcta aaccggagtt tgcgaacaac cacttcctgc
    15241 aaggtcaatg gcgcaacatt gcccgcgcac aaatcttgct gggcgagttt gaacctgcgg
    15301 aaattgttct cgaagaactc aatgaaaatg cccgcagtct gcggttgatg agcgatctca
    15361 accgtaacct gttgctgctt aatcaactgt actggcaggc cggacgtaaa agtgacgccc
    15421 agcgcgtgtt gctggacgca ttaaaactgg cgaatcgcac cggatttatc agtcattttg
    15481 tcatcgaagg cgaagcgatg gcgcaacaac tgcgccagct gattcaactc aatacgctgc
    15541 cggaactgga acagcatcgc gcgcagcgta ttctgcgaga aatcaatcaa catcatcggc
    15601 ataaattcgc ccatttcgat gagaatttcg ttgaacgtct gctaaatcat ccggaagtgc
    15661 cagaactgat ccgcaccagc ccgttgaccc aacgtgaatg gcaggtcctg gggctgatct
    15721 actccggtta cagcaatgag caaattgcgg gcgagctgga agtggcggca accaccatca
    15781 agacgcatat ccgcaatctg taccaaaaac tcggcgtcgc ccaccgtcag gccgcggtac
    15841 aacacgcgca gaaactgctg aagatgatgg gatatggggt gtgagtttag ccggataatg
    15901 cattggatcc ggtttacatc tttacatcat tcaatactca cccgcgttac gccatctatt
    15961 tctatcaaac caaaccgcac cggcaagaaa cgctccacca cggcgatatt ggtcagcaaa
    16021 tggcatgaag gatgggcgac cgtaaattct cccgcgcccg ccagcgccat cggtagcacc
    16081 agctggtcgg cgagatattc ccccactgcc gccgggcttg ccaggtagcg tttcacctct
    16141 ttcactaact gcgcggctac cacctcggca ctgacgcgct tttcaccgac gacgaaaaag
    16201 cgttcagtga tattttcact ttcgacttcc agcgagacgg tattacccgg cccctggtcg
    16261 cgcggcaggt tatgaatatt ctgttcatgc agggaaaaac tccccgccag tgtagcgatt
    16321 tcacgctcag caacatggcg cggcacacca gctaatagaa cttctccacg catctgcaca
    16381 atgttcccgc gctcgccaag ttgcaaggtg ttaaacgatg ccacgggcga gacttccgtt
    16441 gccaccacgc cgcctccggc aggataaaaa ccgtgacgta acagcgtggt ttgctgatga
    16501 attcctattt tcgccagcag cggctccagc acccggcgga taaaatccgc aggcggcgcc
    16561 gacgggttat cggtgcctcc gctcacttca acacgcgaag gtccatcggc aaaccacagc
    16621 gcgggcagca ccgtttgcag caccagcgta cagcttccgg cactaccgat agcaaagcgg
    16681 tactcgccgc cgcgcacggc gccaggccgg aagaccagac gctgcgaccc cagctccgcg
    16741 ccttccaccg ttgccctaca aatttccgca gccgctttta ccgcggtcag atgctggcgc
    16801 aacagccccg gtttcgcccg cccggcacga atgctggtga tggtaaatgg ctggccggtt
    16861 atcatcgaca ggctcagcgc cgagcgcaga atctgcccgc caccttcgcc ctgtgcgcca
    16921 tccagcgcaa tcatcctttt catcatttat ccttttacgc acaccacctg acgcagggta
    16981 tagataactt ccaccagatc gctttgtgcc gtcatcaccg catcaatatc tttatacgcc
    17041 atcgggattt cgtcgatcac ttcggcatct ttacggcatt ccacatgcgc ggtggcacga
    17101 atttgatctt ccacgctgaa cagttttttc gctttagttc ggctcattac ccgcccggca
    17161 ccgtggctgc acgaacagaa cgactcttca tttcccagcc cacggacgat aaagcttttt
    17221 gctcccatcg aaccgggaat aattccatat tgaccagcac gcgcagacac cgcgccttta
    17281 cgcgtcacgt agatctcttc accaaagtgc tgttcttttt gcacatagtt gtggtgacag
    17341 ttgatctctt ccatcgccag cgtttgtggc tgtctgaccg ttttctgcgt aatgctctgc
    17401 aatgccgtta ccacgttttc catcatcaca tcgcggttaa ggctggcaaa aagctgcgcc
    17461 caggccacgg ctttcaggta atcatcaaag tattccgtac cttccataaa gtacgccaga
    17521 tcacgcgacg gcaacgtctc aagcgtttcc tgcatctctt tttgtgccag atcgataaag
    17581 taagtcccga tggcgttacc aattccgcgt gaaccggagt gcagcataat ccacacctgg
    17641 tccgactcat caaggcagat tttaataaag tggttaccgg ttcccagcgt tcccaggtgt
    17701 ttatagttat tggtattcag gaaacgggga tatttttgcg ttaaccactg ataaccggct
    17761 tcaagctcag cccatttcgc atcgacgttg acaggcgggt tttcccatgc gcctttatca
    17821 cgtttacaac gcccggtagt acgcccgtgc ggcacggccg tttcaatcgc ctgacgcagc
    17881 tctgccaggt tttcaggcag gtcttccgcc gttaacgcgg tacgcagcgc gttcattcca
    17941 cagccaatat ccacgcccac cgccgccgga ataatcgccc ctttggtcgg gatcacgcta
    18001 ccaatggtgg aatctttacc caggtgtaca tcaggcatta ccgcaatatg tttgaaaata
    18061 aacggcatct tcgccgtatt aataagttgc tgacgcgcat cggcttctac cggcacgcct
    18121 ttggtccaca tttttaccgg ggcattttca gtggtcagta attcgtaatt cattttgttt
    18181 ttctcttttc gttgtttgct gtcctgataa ttgcaaccgt cgtgccagaa aattaaataa
    18241 gtaaattaat tttttaattc attgttttta aaaagattat atctttatgt ccgtaaccgg
    18301 agatttcccg caaagccgat ttaccgataa tgaaatatcg tcttttataa ggatatctaa
    18361 gatgcgtaaa acagtagctt ttggctttgt cggaacggtg ctggattatg ccgggcgcgg
    18421 cagtcagcgc tggtcaaaat ggcatccgac actctgttta tgccagcaag aatcgttggt
    18481 catcgatcga ctggaattat tgcatgacgc ccgctcgtgc tcgctatttg aaacgcttaa
    18541 acgcgatatc gccagcgttt cgccagaaac agaagtggtg agcattgaga ttgaactgca
    18601 taacccgtgg gatttcgaag aggtttacgc ctgcctgcat gatttcgccc gtggttacaa
    18661 gtttcagcca gaaaaagaag actatttaat tcacatcacc accggcaccc acgtcgcgca
    18721 gatttgctgg tttctgctgg cggaagcgcg ttatctaccc gcccggttga tacaaacttc
    18781 accaccgcgc aaaaaagaac aaccgcgcgg tgccggtgaa gtgacgatta tcgatctcga
    18841 tctaagccgt tataacgcca tcgccagccg ctttgccgag gaacgccagc aaacgcttga
    18901 ttttcttaag tccggcattg ccacgcgtaa cccccacttc aaccgcatga ttgagcagat
    18961 tgaaaaagtg gcgattaaat cccgcgcacc gatcctgctt aacggcccaa ccggtgcggg
    19021 aaagtcattt ctggcgcgac gtatatttga attaaaacag gcgcggcatc agtttagcgg
    19081 cgcgtttgtg gaagtgaact gcgccaccct gcgcggcgat accgccatgt cgacgctgtt
    19141 tggtcatgtg aaaggcgcgt ttaccggggc gcgggaatct cgtgaaggtt tattacgcag
    19201 cgccaacggc ggaatgttgt tttttgatga gattggcgaa ctgggcgcag acgaacaggc
    19261 aatgctgcta aaagccattg aagagaaaac cttttacccg tttggcagcg atcgccaggt
    19321 gagcagtgat tttcagctta tcgccggaac ggtgcgcgat ttgcgccagc tggttgccga
    19381 aggcaaattt cgcgaagatc tgtacgcgcg gatcaatctc tggaccttca ccctgccggg
    19441 tctacgccag cgccaggaag atattgaacc gaaccttgat tatgaagtgg agcgccacgc
    19501 cacactcact ggcgacagcg tgcgttttaa caccgaagcg cggcgcgcct ggttggcttt
    19561 tgcgacctct ccccaggcaa catggcgcgg taactttcgc gaactttctg ccagcgtcac
    19621 gcggatggcc acctttgcca ctagcggacg catcactctg gacgtggttg aagatgagat
    19681 aaaccgtctg cgctataact ggcaggagag ccgcccctcc gcgcttacgg cgttgctggg
    19741 cgcagaggca gaaaacatcg atctcttcga ccgtatgcaa ctggaacacg ttatcgctat
    19801 ctgccgccag gcaaagtcgc tttctgcaac cggacgacag ctttttgatg tttcgcgcca
    19861 gggaaaagcc agcgtcaatg acgcggatcg gctacgcaaa tacctggcgc gttttggtct
    19921 gacgtgggaa gccgtgcagg atcagcacag ctccagttga atatgatggt ccgtcagcac
    19981 ctgcattacg cttactggcg gcggggcgtc ggtgtagacg gcatctacca tgctgatgct
    20041 gcccatattg accatcgcgt tacggccaaa tttcgagtga tcgacaacca gcataacgtg
    20101 gcgcgagttc tcaataatgg cgcgcttggt gcgaacttcg tggtaatcga actccagcag
    20161 cgagccgtcg ctatcgatgc cgcttatccc cagaatgccg aaatcaaggc ggaactggga
    20221 gataaaatcg agcgtcgctt cgccaatgat cccgccatcg cggctgcgta attcgccacc
    20281 agcgagaata atgcggaaat cttcttttac catcaacgtg ttagcaacat tgagattgtt
    20341 ggtgacaata cgcaaattgc tgtgattaag cagcgcgtgc gccaccgctt ccggcgtggt
    20401 gccgatatcg ataaacagtg tcgagccgtt ggggatttgc tccgccactt tgcgggcaat
    20461 cctctctttt tcttcggtct gggtggcttt gcgatcgtgc cacggcgtgt taaccgaact
    20521 ggaaggcagc gccgcaccgc catggtgacg caggatcagg ttttgctccg ccagctcatt
    20581 gaggtcgcgg cgaatagtct gcgggctgac ggagaaatgc tctaccagct cttcagtact
    20641 gacataaccc tgctgtttaa ccagttcgat aataccgttg tgacgttgtg tttgtttcat
    20701 ttataaatcc ctggaattat tttcgttttc gcgcattgag cgaatcaaca aaagccatcg
    20761 ctaaacccac ggctaacccg gcgatgtgtg ctccgttcgc catcgacatc ccaaacaaat
    20821 caaaccatcc ggcgataatc cagatcagcg caaagataat taacccacgt tgcaggtaaa
    20881 tgccactttg cggatcgcgc tcaccacgta gccagacgta gcccatcagc gcatacacca
    20941 cgccagaaag cccgccaaac cacggcccgc tgaatttttg ctgcacatag ccgcttaaca
    21001 gggcactaat gagagtaata acaattagct taccgctacc gaggcgtttt tccaccgcac
    21061 cgccgagata ccaccaccag agcaggttaa agaggatatg catcagcgag aagtgcatta
    21121 acgcgtgggt gaagtaacgc cagaactcaa atttcagtgt tggatcgaat ggccaggcca
    21181 gccataacat cacttcctga tcgccgagaa tttgcatggc gataaacacc accacgcagg
    21241 cgatcatcac cacccaggtt accggacctg cgcgttcacg caaggcagca aagaaaggat
    21301 aacggcgata atgcagacca ctgccggtat ggcccgcctg ccagctggcc gccagataac
    21361 gcggatctgc cgggttttcg agaaaacgcg ccagctccgc ccgcacgcgc tcggcctggg
    21421 actcatccgc cagccagaca tcgctttggt tatgttgttg aatcgtaagg ataacaccct
    21481 gcgtcgccat gtaatcaaca aacgcctgcg ccacgcgggg gttagcaaaa gaggtaatca
    21541 tcaacatcgt tgctgtcgct tattccacac aaaaggggac agtataaagc gttacgcgcc
    21601 gtacgccacc tctgcgggaa actgacgctg ccaggcttca aaaccgccgt caatgctata
    21661 gaccacatcg tagccctgtt gcagcagata ctgcgccgcg cctttgctgc tattgccgtg
    21721 ataacacatc accatcaccg gagtgtcaaa gtcgttatca cgcataaacg cgcccagcgt
    21781 gtcgttggtt aaatggaaag cctgcaccgc atgtcccatt gcgaaactct gtggatcgcg
    21841 aatatcgacc agcaccgcct ctttttcctg caacttctgg tgcgcgtcgg caacgttaat
    21901 acattcgaac agatccatgc gtctctcttt ctttacaaac aagtgggcaa atttaccgca
    21961 cagtttacgt cgaagcggca gataaacgcc ataatgttat acatatcact ctaaaatgtt
    22021 ttttcaatgt tacctaaagc gcgattcttt gctaatatgt tcgataacga acatttatga
    22081 gctttaacga aagtgaatga gggcagcatg gaaaccaaag atctgattgt gataggtggc
    22141 ggcatcaatg gtgctggtat cgcggcagac gccgctggac gcggtttatc cgtgctgatg
    22201 ctggaggcgc aggatctcgc ttgcgcgacc tcttccgcca gttcaaaact cattcacggt
    22261 ggcctgcgct accttgagca ctatgaattc cgcctggtca gcgaggcgct ggctgaacgt
    22321 gaagtgctgc tgaaaatggc tccgcatatc gccttcccaa tgcgttttcg cctgccacat
    22381 cgtccgcatc tgcgcccggc gtggatgatt cggattggtc tgtttatgta cgatcatctg
    22441 ggtaaacgca ccagcctgcc gggatcaacc ggtttgcgtt ttggcgcaaa ctcagtgtta
    22501 aaaccggaaa ttaagcgcgg attcgaatat tctgactgtt gggtagacga cgcccgtctg
    22561 gtactcgcca acgcccagat ggtggtgcgt aaaggcggcg aagtgcttac tcggactcgc
    22621 gccacctctg ctcgccgcga aaacggcctg tggattgtgg aagcggaaga tatcgatacc
    22681 ggcaaaaaat atagctggca agcgcgcggc ctggttaacg ccaccggccc gtgggtgaaa
    22741 cagttcttcg acgaggggat gcatctgcct tcgccttatg gcattcgcct gatcaaaggc
    22801 agccatattg tggtgccgcg tgtgcatacc cagaagcagg cctacattct gcaaaacgaa
    22861 gataaacgta ttgtgttcgt gatcccgtgg atggacgaat tttccatcat cggcaccacc
    22921 gacgtagagt ataaaggcga tccgaaagcg gtgaagattg aagagagtga aatcaactat
    22981 ctgctgaaag tgtataacgc gcactttaaa aaacagctta gccgtgacga tatcgtctgg
    23041 acctactccg gtgtgcgtcc gctgtgtgat gatgagtccg actcgccgca ggctattacc
    23101 cgtgattaca cccttgatat ccatgatgaa aacggcaaag caccgctgct gtcggtattc
    23161 ggcggtaagc tgaccaccta ccgaaaactg gcagaacatg cgctggaaaa actgacgccg
    23221 tattatcagg gtattggccc ggcgtggacg aaagagagcg tgctgccggg tggtgccatt
    23281 gaaggcgacc gcgacgatta cgcagctcgt ctgcgccgtc gctatccatt cctgactgaa
    23341 tcgctggcgc gtcattacgc acgcacttac ggcagcaaca gcgagctgct gctcggcaat
    23401 gcgggggcga taagcgacct cggggaggat ttcggtcatg agttctacga agcggaactg
    23461 aaatacctgg tggatcacga atgggtccgc cgcaccgacg atgccctttg gcgtcgcaca
    23521 aaacaaggca tgtggctgaa tgcggatcaa caatctcgtg tgagtcagtg gctggtggaa
    23581 tatacgcagc agaagttgtc gctggcgtcg taaggatgat gcccggttga agtgcaaccg
    23641 ggctatttgg attccttaga ctattcattg taaataattg aataacggcc cctgagctaa
    23701 aatcgccaaa cttaagcacg ttacccaatc gccccacttc ttcctctggt ttctattttt
    23761 tctgcaccaa tggcaataat atcccaatgc aaaaccaagc tgtgcactaa tcgggccgac
    23821 aaaatcagtc caaggctgcg gccaaaaagg ggaaaaattc aggggaggcc agacaaacgt
    23881 cagaaagaaa tttcggatat tttccagcaa cgctgatttc tctggagaaa tataaagaat
    23941 gaaattcgag agaattaacc agaaatagac cggcgaaaag accagccagc aatgcagtct
    24001 gttttttaat tcaggaggcg ttctgcggga gaattgccaa ccgatgccag ccattacac
//
LOCUS       DAJVSY010000053        23492 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.053, whole genome shotgun sequence.
ACCESSION   DAJVSY010000053 DAJVSY010000000
VERSION     DAJVSY010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 23492)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23492)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23492
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.053"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(297..611)
                     /gene="pspE"
                     /locus_tag="OQQ19_001874"
     CDS             complement(297..611)
                     /gene="pspE"
                     /locus_tag="OQQ19_001874"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase PspE"
                     /protein_id="HCS1803525.1"
                     /translation="MFKKGLLALALVFSLPVFAAEHWIDVRVPEQYQQEHVQGAINIP
                     LKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKDIAMPKV
                     KG"
     gene            complement(686..907)
                     /gene="pspD"
                     /locus_tag="OQQ19_001875"
     CDS             complement(686..907)
                     /gene="pspD"
                     /locus_tag="OQQ19_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein PspD"
                     /protein_id="HCS1803526.1"
                     /translation="MNTRWQQAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAIKSVA
                     RRPLKMLLAVALEPLLSRAANKLAQRYKR"
     gene            complement(916..1275)
                     /gene="pspC"
                     /locus_tag="OQQ19_001876"
     CDS             complement(916..1275)
                     /gene="pspC"
                     /locus_tag="OQQ19_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspC"
                     /protein_id="HCS1803527.1"
                     /translation="MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLS
                     IFFGLALFTLVAYIILSFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLREME
                     RYVTSDTFTLRSRFRQL"
     gene            complement(1275..1499)
                     /gene="pspB"
                     /locus_tag="OQQ19_001877"
     CDS             complement(1275..1499)
                     /gene="pspB"
                     /locus_tag="OQQ19_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspB"
                     /protein_id="HCS1803528.1"
                     /translation="MSALFLAIPLTIFVLFVLPIWLWLHYSNRSGRSELSQSEQQRLA
                     QLADEAKRMRERIQALESILDAEHPNWRDR"
     gene            complement(1553..2221)
                     /gene="pspA"
                     /locus_tag="OQQ19_001878"
     CDS             complement(1553..2221)
                     /gene="pspA"
                     /locus_tag="OQQ19_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein PspA"
                     /protein_id="HCS1803529.1"
                     /translation="MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVR
                     STSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIK
                     SLEHEVTLVDDTLARMKKESGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGK
                     LDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAELKADDAISEQLAQLKAKMK
                     QDNQ"
     gene            2388..3365
                     /gene="pspF"
                     /locus_tag="OQQ19_001879"
     CDS             2388..3365
                     /gene="pspF"
                     /locus_tag="OQQ19_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309907.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein operon transcriptional
                     activator"
                     /protein_id="HCS1803530.1"
                     /translation="MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKEL
                     IASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGG
                     TLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPATVNEGT
                     FRADLLDRLAFDVVQLPPLRERESDIMLMAEHFAIQMCREIKLPLFPGFTERARETLL
                     NYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLP
                     LDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI"
     gene            complement(3485..4750)
                     /gene="puuE"
                     /locus_tag="OQQ19_001880"
     CDS             complement(3485..4750)
                     /gene="puuE"
                     /locus_tag="OQQ19_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate transaminase"
                     /protein_id="HCS1803531.1"
                     /translation="MSNNEFHQRRLSATPRGVGVMCNFFAQSAENATLKDVEGNEYID
                     FAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQA
                     KTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGP
                     FPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPK
                     ELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGGMPLS
                     GVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTL
                     IDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYG
                     NVIRFLYPLTIPDAQFDAAMKILQDALSD"
     gene            complement(4788..6057)
                     /gene="puuB"
                     /locus_tag="OQQ19_001881"
                     /pseudo
     CDS             complement(4788..6057)
                     /gene="puuB"
                     /locus_tag="OQQ19_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415817.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylputrescine oxidase"
     gene            complement(6059..7546)
                     /gene="puuC"
                     /locus_tag="OQQ19_001882"
     CDS             complement(6059..7546)
                     /gene="puuC"
                     /locus_tag="OQQ19_001882"
                     /EC_number="1.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase PuuC"
                     /protein_id="HCS1803532.1"
                     /translation="MNFHHLAYWQDKALSLAIENRLFINGEYTAAAENETFETVDPVT
                     QAPLAKIARGKSVDIDRAVSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELA
                     LLETLDTGKPIRHSLRDDIPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGV
                     IAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLSAIRLVGLAKEAGLPDGVLN
                     VVTGFGHEAGQALSRHNDIDAIAFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIV
                     FSDCSDLQKAASSTAAGIFYNQGQVCIAGTRLLLEESIADEFLALLKQQAQNWQPGHP
                     LDPATTMGTLIDCAHADSVHSFIREGEGKGQLLLDGRNAGLAAAIGPTIFVDVDPNAS
                     LSREEIFGPVLVVTRFTSEEQALQLANDSQYGLGAAVWMRDLSRAHRMSRRLKAGSVF
                     VNNYNDGDMTVPFGGYKQSGNGRDKSLHALEKFTELKTIWISLEA"
     gene            complement(7821..8378)
                     /gene="puuR"
                     /locus_tag="OQQ19_001883"
     CDS             complement(7821..8378)
                     /gene="puuR"
                     /locus_tag="OQQ19_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001464354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator PuuR"
                     /protein_id="HCS1803533.1"
                     /translation="MSDEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDK
                     VSPAISTLQKLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLVHNGN
                     PNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINT
                     GIPHSFSNTSAGICRIISAHTPTTF"
     gene            complement(8405..9168)
                     /gene="puuD"
                     /locus_tag="OQQ19_001884"
                     /pseudo
     CDS             complement(8405..9168)
                     /gene="puuD"
                     /locus_tag="OQQ19_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415814.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase"
     gene            9380..10798
                     /gene="puuA"
                     /locus_tag="OQQ19_001885"
     CDS             9380..10798
                     /gene="puuA"
                     /locus_tag="OQQ19_001885"
                     /EC_number="6.3.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-putrescine ligase"
                     /protein_id="HCS1803534.1"
                     /translation="METNIVEVENFVQQPEERRGSAFTQEVKRYLERYPNTQYVDVLL
                     TDLNGCFRGKRIPVSSLKKLEKGCYFPASVFAMDILGNVVEEAGLGQEMGEPDRTCVP
                     VLGSLTPSAADPEFIGQMLLTMVDEDGAPFDVEPRNVLNRLWQQLRQRGLFPVVAVEL
                     EFYLLDRQRDAEGYLQPPCAPGTDNRNTQSQVYSVDNLNHFADVLNDIDELAQLQLIP
                     ADGAVAEASPGQFEINLYHTDNVLEACDDALALKLLVRLMAEKHKMHSTFMAKPYEEH
                     AGSGMHIHISMQNNRGENVLSDTEGEDSPLLKKMLAGMIDLMPSSMALLAPNVNSYRR
                     FQPGMYVPTQASWGHNNRTVALRIPCGDRHNHRVEYRVAGADANPYLVMAAIFAGILH
                     GLDNELPLQEEVEGNGLEQEGLPFPIRQSDALGEFIENDHLRRYLGERFCHVYHACKN
                     DELLQFERLITETEIEWMLKNA"
     gene            10947..11112
                     /locus_tag="OQQ19_001886"
                     /pseudo
     CDS             10947..11112
                     /locus_tag="OQQ19_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518772.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            11102..12487
                     /gene="puuP"
                     /locus_tag="OQQ19_001887"
     CDS             11102..12487
                     /gene="puuP"
                     /locus_tag="OQQ19_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine/proton symporter PuuP"
                     /protein_id="HCS1803535.1"
                     /translation="MAINSPLNIAAQPGKTRLRKSLKLWQVVMMGLAYLTPMTVFDTF
                     GIVSGISDGHVPASYLLALAGVLFTAISYGKLVRQFPEAGSAYTYAQKSINPHVGFMV
                     GWSSLLDYLFLPMINVLLAKIYLSALFPEVPPWVWVVTFVAILTAANLKSINLVANFN
                     TLFVLVQISIMVVFIFLVVQGLHKGEGVGTVWSLQPFISENAHLIPIITGATIVCFSF
                     LGFDAVTTLSEETPDAARVIPKAIFLTAVYGGVIFIAASFFMQLFFPDISRFKDPDAA
                     LPEIALYVGGKLFQSIFLCTTFVNTLASGLASHASVSRLLYVMGRDNVFPERVFGYVH
                     PKWRTPALNVIMVGIVALSALFFDLVTATALINFGALVAFTFVNLSVFNHFWRRKGMN
                     KSWKDHFHYLLMPLVGALTVGVLWVNLESTSLTLGLVWASLGGAYLWYLIRRYRKVPL
                     YDGDRTPVSET"
     gene            12621..12866
                     /locus_tag="OQQ19_001888"
     CDS             12621..12866
                     /locus_tag="OQQ19_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmjA family protein"
                     /protein_id="HCS1803536.1"
                     /translation="MNHDIPLKYFDIADEYATECAEPVADAERTPLAHYFQLLLTRLM
                     NNEEISEEAQHEMAAEAGINPVRIDEIAEFLNQWGNE"
     gene            13179..14822
                     /gene="sapA"
                     /locus_tag="OQQ19_001889"
     CDS             13179..14822
                     /gene="sapA"
                     /locus_tag="OQQ19_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein SapA"
                     /protein_id="HCS1803537.1"
                     /translation="MRQVLSSLLVIAGLVSGQAIAAPESPPHADIRDSGFVYCVSGQV
                     NTFNPSKASSGLIVDTLAAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRR
                     DVPFQKTDWFTPTRKMNADDVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSV
                     RKLDNHTVEFRLAQPDASFLWHLATHYASVMSAEYARKLEKEDRQEQLDRQPVGTGPY
                     QLSEYRAGQFIRLQRHDDFWRGKPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPAAS
                     QLSILRDDPRLRLTLRPGMNVAYLAFNTAKPPLNNPAVRHALALAINNQRLMQSIYYG
                     TAETAASILPRASWAYDNEAKITEYNPAKSREQLKALGLENLTLKLWVPTRSQAWNPS
                     PLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMSHDLTLSGWATDSNDPDSFFRP
                     LLSCAAIHSQTNLAHWCDPKFDSVLRKALSSQQLAARIEAYDEAQSILAQELPILPLA
                     SSLRLQAYRYDIKGLVLSPFGNASFAGVYREKQDEVKKP"
     gene            14819..15784
                     /gene="sapB"
                     /locus_tag="OQQ19_001890"
     CDS             14819..15784
                     /gene="sapB"
                     /locus_tag="OQQ19_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter permease SapB"
                     /protein_id="HCS1803538.1"
                     /translation="MIIFTLRRILLLIVTLFLLTFVGFSLSYFTPHAPLQGASLWNAW
                     VFWFNGLIHWDFGVSSINGQPIAEQLKEVFPATMELCILAFGFALIVGIPVGMIAGIT
                     RHKWQDNLINAIALLGFSIPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPITGFA
                     LIDAWLSDSPWRDEMIMSAIRHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVKAA
                     ATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAI
                     RQQDYAAISAGVMVCGSLVIIVNVISDILGAMANPLKHKEWYALR"
     gene            15771..16661
                     /gene="sapC"
                     /locus_tag="OQQ19_001891"
     CDS             15771..16661
                     /gene="sapC"
                     /locus_tag="OQQ19_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter permease SapC"
                     /protein_id="HCS1803539.1"
                     /translation="MPYDSVYSEKRPPGTLRTAWRKFYSDASAMVGLYGCAGLAVLCI
                     FGGWFAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGAAPTVGGA
                     FVVTLAATICGLVLGTFAGATHGLRSAVLNHILDTLLAIPSLLLAIIVVAFAGPSLSH
                     AMFAVWLALLPRMVRSIYSMVHDELEKEYVIAARLDGASTLNILWFAVMPNITAGLVT
                     EITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMIS
                     VLLVNLLGDGVRRAIIAGVE"
     gene            16661..17653
                     /gene="sapD"
                     /locus_tag="OQQ19_001892"
     CDS             16661..17653
                     /gene="sapD"
                     /locus_tag="OQQ19_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein
                     SapD"
                     /protein_id="HCS1803540.1"
                     /translation="MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGS
                     GKSLIAKAICGVNKDNWRVIADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCL
                     DPSERVGRQLMQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT
                     EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHD
                     LQMLSQWADKINVLYCGQTVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLN
                     TLPGAIPLLEQLPIGCRLGPRCPYAQRECIVTPRLTGAKNHLYACHFPLNMEKE"
     gene            17655..18461
                     /gene="sapF"
                     /locus_tag="OQQ19_001893"
     CDS             17655..18461
                     /gene="sapF"
                     /locus_tag="OQQ19_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein
                     SapF"
                     /protein_id="HCS1803541.1"
                     /translation="MIETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLA
                     IIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSFRSQRIRMIFQDPSTSLN
                     PRQRISQILDFPLRLNTDLEPEQRRKQIIETMRMVGLLPDHVSYYPHMLAPGQKQRLG
                     LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHIS
                     DQVLVMHQGEVVERGSTADVLASPLHELTKRLIAGHFGEALTADAWRKDR"
     gene            18529..18882
                     /locus_tag="OQQ19_001894"
     CDS             18529..18882
                     /locus_tag="OQQ19_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF559 domain-containing protein"
                     /protein_id="HCS1803542.1"
                     /translation="MMDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVG
                     SYILDFACCSARVVVELDGGQHDLAVAYDTRRTSWLESQGWTVLRFWNNEIDCNEEAV
                     LEIILQELNRRSPSP"
     gene            19250..20038
                     /gene="fabI"
                     /locus_tag="OQQ19_001895"
     CDS             19250..20038
                     /gene="fabI"
                     /locus_tag="OQQ19_001895"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HCS1803543.1"
                     /translation="MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL
                     KGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDG
                     DYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMG
                     LAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRR
                     TVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAAMNELELK"
     gene            20183..21310
                     /locus_tag="OQQ19_001896"
     CDS             20183..21310
                     /locus_tag="OQQ19_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309887.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMD domain-containing protein"
                     /protein_id="HCS1803544.1"
                     /translation="MEQRHITGKSHWYHETQSSTAEYDVLPLVPEAAKVSDPFLLDVI
                     LDEETLAPFLSWLVPARVLAVELFPDQLTVTRSQTFTAYERLSTALTVAQVCGVQRLC
                     NYYSARLTPLPGPDSSRESNHRLAQITQYARQLASSPSIIDNRSRQHLNDVGLTARDC
                     VIINQIIGFIGFQARTIATFQAYLGHPVRWLPGLEIQNYADASLFADESIRWRSSYEV
                     EKLPEEYTKSSTAELCQLAETHSLHPISLSLLERLLNSTRVNTQPDNKLAALLCARIN
                     GSPACFAACMDSSNEYKKISPLLRKGENEINQWADRHSVEHATVQAIQWLTRAPDRFS
                     TAQFSPLLEHEQSSTQIINLLVWSGLCGWINRLKIALGETY"
     gene            21378..23312
                     /gene="rnb"
                     /locus_tag="OQQ19_001897"
     CDS             21378..23312
                     /gene="rnb"
                     /locus_tag="OQQ19_001897"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exoribonuclease II"
                     /protein_id="HCS1803545.1"
                     /translation="MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSY
                     FIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPD
                     HPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVP
                     WWVTLARHNLEKEAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALP
                     DDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN
                     EVRPVLACRMTLSADGAIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIA
                     EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEA
                     MIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFC
                     KLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINH
                     RLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAA
                     EIVDISRGGMRVRLVDNGAIAFIPAPFLHAMRDELVCSQENGTVQIKGETVYKVTDVI
                     DVTIAEVRMETRSIIARPVA"
     gene            complement(23390..23492)
                     /locus_tag="OQQ19_001898"
                     /pseudo
     CDS             complement(23390..23492)
                     /locus_tag="OQQ19_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791239.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         5307 a         6207 c         6118 g         5860 t
ORIGIN      
        1 gacgcgttac aagtttctgt aaatgagttg cggtaaatgt tccaccgtag atttcgtcca
       61 ggtaatcagt aattttctgt ttcatgttgc ctttcagtgg tagcgatccc atgaaacgag
      121 agactactcc gcagaaaata aactgtcaat tgagcacaag ggttttagtc acgcaggaaa
      181 tcatttttta ccagggaaaa agcgtatttg tgagctgacg caaataatct atggggatgt
      241 aaataaggtg tgacagaaaa aaaacggcgc ataagcgccg ctcatggtga attcttttaa
      301 cctttgacct tcggcattgc gatgtctttc aagccaccgg cgttctcaac gtgggtatat
      361 cccatctcgc taaggatctc ttttgcttgc cctgactggc gtccggcatt gcaatacact
      421 ttcacggtgt cgtttttatc cggaacggcg gtggcaatgc gctctttcac ttccttcagg
      481 ggaatattga tggccccctg aacgtgctct tgctgatact gctctggaac acgaacatcg
      541 atccagtgtt cagcggcgaa aacgggcagt gaaaacacca gtgccagagc aagtaagcct
      601 tttttaaaca tgtaagcgtc cttctatgga tgaaaattgc catccattat acgcctgaga
      661 tttaacaatt tttgcgaaac tcccctcacc ttttataacg ctgtgccagt ttattagcag
      721 cccgacttaa cagcggttcc agcgccacag ccagcaacat tttcagcggt cggcgagcaa
      781 ctgattttat cgcccagccc gctacacccg ccgggccata gcgcagtgcg gtaagaagta
      841 ccagcttgcc tgctaatttg aaaccaggct ttaccttttg cccggcctgt tgccagcgag
      901 tattcataac tttcctcaca gttgacggaa acggctacgt aacgtgaaag tatcggaagt
      961 gacataacgt tccatctcgc gtaaacgcgt ttcacttgcc gccagttcac ggtcgacttc
     1021 atccagcaat tcgctgctgg agggtagctg ctcaccaaag gccatgttgt ccggcattgg
     1081 atcaagcgca aatgacaaaa tgatgtaagc aaccagggta aacagcgcca gaccgaagaa
     1141 aatcgacagc accaccagga tacgcaccag ttttaccggt acatcaaaat agttggcaat
     1201 cccggcgcag acgccgcgga ccatgccctg ctgtggaata cgccataatt ttttattgag
     1261 attaatgccc gccattagcg atccctccag ttcggatgtt ctgcatcaag aatagattcc
     1321 agcgcctgaa tacgttcgcg catccgtttt gcttcatcag ccagttgcgc taatcgctgc
     1381 tgctcacttt gcgacaattc actgcgacca gaacgattgc tgtaatgcag ccataaccag
     1441 atcggtaaaa caaacagcac aaaaatggtt aacggaatag ccagaaatag cgcgctcata
     1501 agtactcctt agacgatgag cggcggcgcg ttcggacgcc gcctagatgt tattattgat
     1561 tgtcttgctt cattttggct tttaattgtg ccagttgttc gctgattgca tcatcggctt
     1621 tcagttcggc aaactgatcg tccagcgatt tttgtttacc gaagctgtgg ctttctgctt
     1681 ccgcttccat ctggtcaata cgacgttcga aagattcgaa acgagccatt gcttcatcca
     1741 gtttgccact gtccagctga cgacgcacat cgcgcgacga gtttgccgcc tgatggcgta
     1801 acatcaatgc ctgctggcga gcgcgtgttt cgctcaattt gttttccagc tcaccgctct
     1861 ctttcttcat gcgtgccagc gtatcgtcca ccagcgtcac ttcatgttcc agactcttaa
     1921 tcagatcggt cagtttctgt ttttcaatta acgccgcacg tgccaaatcc tctctctctt
     1981 tcagcagcgc cagttcggct ttttcctgcc attcaacttc acgcgccgac gcttgttcaa
     2041 tacggcgagt cagctgtttc ttttctgcca acgcacgcgc cgaagtagaa cgtacttcaa
     2101 ccagtgtatc ttccatctcc tggatcatca gacgcaccag tttctgtgga tcttccgctt
     2161 tctctaacag agcgttgatg ttggcattca cgatgtcggc aaagcgagaa aaaataccca
     2221 taatgttgtc ctcttgattt ctgcgttcag gattgtcctg ctgaactgtt aatacaattt
     2281 gcgtgccaat tttttatctt tttgatttat aaagatctga ttgaagaatc atcagcaaca
     2341 tgccaggatg aattagcgaa ttacactaac aagtggcgaa tttcatcatg gcagaataca
     2401 aagataattt acttggtgag gcgaacagct ttctcgaagt gctggaacag gtttcgcatc
     2461 tcgcaccgct ggacaaaccg gtgctcatca tcggcgaacg cggcaccggt aaagagctga
     2521 ttgccagccg cctgcattat ctctcctccc gttggcaagg gccgtttatt tcccttaact
     2581 gcgcggcgtt aaatgaaaat ctgctggatt ccgaactgtt tggtcacgaa gcgggggcgt
     2641 ttaccggtgc gcaaaaacgt catccaggga gatttgaacg tgccgacggc ggtacgctat
     2701 ttcttgatga actcgctacg gcaccgatga tggtgcagga gaaattattg cgcgtgattg
     2761 agtacggtga actggagcgc gttggcggca gccagccatt gcaggtgaat gtgcggttgg
     2821 tatgcgcgac gaatgccgat ctcccggcga cggtcaatga aggcactttt cgcgctgacc
     2881 tgctcgaccg actggctttt gatgttgtac aactgccacc actgcgcgag cgcgaaagcg
     2941 acataatgtt gatggcagaa cactttgcca tccagatgtg tcgggaaatc aagctgcctc
     3001 tgttcccggg gtttacggag cgcgccagag aaacattgct gaattatcgt tggccgggaa
     3061 atattcgtga attgaaaaac gtggtggaac gttcagtgta tcgccacggc accagcgatt
     3121 atccgcttga tgacatcatt attgatccct ttaaacggcg tccgcctgaa gacgctatcg
     3181 ccgtttcaga aaccacctcg cttccaacac tgccgctgga tttacgtgag tttcagatgc
     3241 agcaggaaaa agagttgctg caactcagtt tgcaacaagg gaaatataac cagaagcgcg
     3301 cggctgaatt actggggtta acttatcatc agttccgcgc gttgttgaaa aagcaccaga
     3361 tttagcgaag ttgagcaata caacttgccg gatgcggcgt gaatgcttta ttcggcatac
     3421 ataatcaata agtcgtttgc aggcctgata agcgcagcgc atcagacatt attgcgttgg
     3481 gctattaatc gctcagcgca tcctgcaaaa ttttcattgc cgcatcgaat tgcgcatccg
     3541 gaatggtcag cggatacagg aagcgaatca cgttgccgta tgcgccacag gtcagcagga
     3601 gcagcccctg cgccagcgcg cgttgctgga ttttctgtgc aatcgccgct gacggctcgc
     3661 ccgtttgcgg atcgttaaac tctgccgcaa tcatcgaccc caggccgcgt accgcagcaa
     3721 tggccggaac gctttctttg gcatcaatca acgtgttttt gagacgctgg cccagttgat
     3781 tcgcgcgttc gcagagtgat tctttgtcga taatattgag caccgcgtgc gcggcagcca
     3841 ccgccagcgg gttcccggcg taggtgccac ccaacccgcc cggcgcgggc gcgtccataa
     3901 tattcgcgtt accgaccacg cccgaaagcg gcatcccgcc cgcgaggctt ttcgccatcg
     3961 tcattaagtc cggcttatcg gcgtaatgat ccatggcaaa cagtttaccg gtacgcgcaa
     4021 agccgctttg cacttcatcg gcaatcatca caataccgtg ctcgtcgcac aggcggcgaa
     4081 tggcggcaac cagctctttt ggcgcaacgt tgaaaccgcc ctcgccctgc accggttcga
     4141 aaataatggc cgccacctgc ttcgcttcaa tgtccgattt aaacaagcgt tcgatggcgt
     4201 cgagggagtc ctgtgttgaa atgccgtgta aatctgacgg ataaggtacg tgatacaccg
     4261 aaccagggaa cgggccgaag ccgattttgt acggcgcaac ttttccggtc agcgccatgg
     4321 tcatatatgt acgaccgtgg aagccgccgc taaacgcaat cacgccaggt cgtccggtat
     4381 gggcgcgagc aattttcacc gcgttttcca ccgcttccgc gccggtagtg aagaatgcgg
     4441 ttttagcctg cccgctcact ggggcaaggg cgttaatttt ctccgccagc gtgacgtagc
     4501 tttcgtacgg cacaatctga tacgccgtgt gggtaaactg ttgcaattgc tgctccaccg
     4561 ccgcgaccag atcagggtgg cgatgcccgg tattcagcac cgcaatgcct gcggcgaaat
     4621 cgatgtattc gttgccctct acgtccttca gcgtagcgtt ttctgccgac tgggcgaaga
     4681 agttacacat cacgccaacc ccgcgtgggg tagcagaaag acgacgctga tggaattcat
     4741 tgttgctcat gtttcacacc ttttgactct tcactgttaa tcggaaatta aacgcccaga
     4801 cgatcgcgca ggctgtaata agccgcgccc atcgcggtaa atggcacgcg cagcgtgcgc
     4861 ccgccgggga acgggtaatg cggcagattg gcgaaggcat cgaaacgctc ggcgtcaccg
     4921 cgcagcagtt cagcaatcaa acgcccggcg aggtgggtac aggtgacgcc gtggccgctg
     4981 tagccctgca tgtaatagat gttggtatcg aggcgaccga actgcggcat ccgtgaaagg
     5041 gtcagcagga agttgcccgt ccagcgatag tcgattttga cgcccttcag ctgcgggaag
     5101 gttttcagca gtttcggcac aacaagacgc tcaacgtcat ccgggtcgcg cgcgccgtag
     5161 accacgccgc cgccgtacag caaacggttg tcggcggtaa gacggtagta atcaagcaga
     5221 taattacagt cttccacaca gtagtttttc gggatcagcg aacgggctaa atcttccgac
     5281 agccgttcgg tggtgatcac ctgcgtgccg cacggcatgc tgcgtttcgc cagttccggc
     5341 tctactttat cgcccagata cgcattcccg gcgacaatca catacttcgc cgtcacctga
     5401 cctttggcag tgcgcacaac ggctggcgtg gtgtgctgga tctgcgtcac ggcagaaagt
     5461 tcatacacgc gcccgccgtt gaggcggatg gcgtccgctt cgccaatggc gaggtttagt
     5521 gggtgaatat gcccaccgct gtgatccagc agcgcaccgg tatagcgatc gctggctact
     5581 tcacggcgaa tggcgttggc gtccagcaat tccagctgtt tattgccgta gcgttcccag
     5641 ttctctttct gctcttcaag tgtggcgagc tgtttatcat tcatcgccac aaacaggctg
     5701 ccggggcggt agtcgcagtc aatctgataa cgtttgatac gttcgcggat gatctcacca
     5761 ccttcgaaca tcatgctgcc gagcataggg gcggtgtcca tgccgtagct tttttcgatc
     5821 acgtcgatgt cgcggttgta ggagttcaca agctgcccgc cattgcgccc gcttgcgcca
     5881 aagccgatgc gtgaggcttc gagaaccact acgtcaaagc ccgcttccgc cagatgcagc
     5941 gcggaggaga gcccggtata gccgccgcca accacgcaaa cgtcgcaggt gattgactca
     6001 ttcagggtgt cgaatggcac gtatttatgc gtaataactg ctggtatgtt cggtcatttc
     6061 aggcctccag gcttatccag atggttttca gttcggtgaa tttttcaagg gcatgcaggg
     6121 atttgtcgcg accgttgccg ctctgcttat agccgccaaa cggcacggtc atatcgccgt
     6181 cgttgtagtt attgacgaag acggaaccgg ctttcaggcg gcggctcata cggtgcgcgc
     6241 gggagaggtc gcgcatccat accgccgcgc caaggccgta ctggctgtcg ttggcaagct
     6301 gtagcgcctg ttcttctgat gtgaaacgcg tgaccaccag caccggaccg aaaatctctt
     6361 cgcggcttaa ggacgcattc gggtctacat ccacaaagat ggtcgggccg atggcggcag
     6421 ccagcccggc gttacggcca tccagcagca gttgcccttt gccttcgccc tcacgaataa
     6481 agctatggac cgagtcggcg tgggcgcagt cgattaaagt gcccatggtg gttgcggggt
     6541 caagcggatg gcccggctgc cagttttgcg cctgctgttt taacagggct aagaattcat
     6601 cggcgatgct ctcttccagc aacaggcgtg ttccggcgat gcacacctga ccctggttgt
     6661 agaagatgcc tgctgcggtg gagctcgccg ctttttgcag atccgaacaa tcggagaaaa
     6721 cgatgttggc gcttttgccg cccgcttcca gccagacgcg tttcatgttg ctgtcgcccg
     6781 catctttcag cagctgtttc ccggtacggg ttgaaccggt aaaggcaatg gcgtcgatat
     6841 cgttatgacg cgacagcgcc tgccccgctt catgaccaaa acccgtcacc acgttcaaca
     6901 caccatccgg caagcctgct tctttcgcca gccccacgag acgaatcgca ctgagcggtg
     6961 atttttcaga cggttttaga atcacgctgt ttcccgccgc cagcgccggg ccgagtttcc
     7021 agcaagtcag caacagcggg aagttccacg gcacgatggc ggcaatcacg ccgaccggtt
     7081 cacgcacgat catcgccagc tcatggctac tggtggtcgc cacttcgcca tacactttgt
     7141 cgatcgcttc ggcgtaccag cgaatggcgc gcgccgcgcc gggaatatca tcacgcagac
     7201 tgtgacgaat cggtttgccg gtgtcgagag tttccagcag tgccagctct tcggcgtggg
     7261 cttccattaa atcggcgagt ttattcagta ccgctttacg tttagccgga gaagagagtg
     7321 accagtcgcc gcgttcaaat acgccgcgtg ctgcgctcac cgcacggtcg atatcgacgc
     7381 tcttgccgcg ggcaattttc gccagcggtg cctgggtgac tggatcaacg gtttcaaagg
     7441 tttcattttc cgccgcagca gtatattcac cgttaataaa taagcggttt tcaatggcga
     7501 gacttaacgc tttatcctgc cagtaagcca gatgatgaaa attcattatg actcctgttt
     7561 tacgtctatc agatatatgc agtttgtgaa cgtcagggcg cagagatccc cgggccgtat
     7621 gcccgtttat ttctggcgac attctttata tacacttcat ccttcaagcc gcctctgcct
     7681 tggctgcgtt cgctcccccg aatcacttac ctgagtaagc tcatcgggat tcgctcactt
     7741 gccgccttga tgcaacttga atgattttgt gtatagattg ccgggcgcat tgcgcttacc
     7801 cggcttacag aacaaaaaga ttaaaacgtg gtgggcgtat gggcgctgat aattcggcaa
     7861 atacctgccg acgtattact gaaactgtgc gggatgccgg tattaatggc ataactttga
     7921 cccgcgacga ggtggtaatc ctgaccatta atcgtcagaa caatttcacc ttccagtact
     7981 gtgcctattt cctcaccctg atgcttaatt ctttccccag tggttgtgcc cggctggtac
     8041 gtttcaaaga tcatcgccag cgtgcgattc gggttaccgt tatgaaccag cttcattgac
     8101 acaccctgac tgcccatctc aattaagtcg tcctgattaa tgacgacctg cggctcatca
     8161 ggtttttccg gctcggaaaa gaattccgag agtgacagac catacacctt cagcagcttt
     8221 tgcagcgtac tgatggcagg gctgacttta tcttgttcta tcgtactgat agcactgtga
     8281 gtcagcccgg agagttcggc ggcacgacgt tgtgaaagcc cctgctgctg gcggatttcc
     8341 gacaagcgtt ttcctggcgc cagtccctca tcactcatat ttgcatttcc ttaaactgta
     8401 gtggtcagag tcgctgtttt tcagcgatat ggtgctgaca agcggtgata aagccctcga
     8461 acaatatacg cgaaagagcg tactcgctac tgttccattc cgggtgccac tgtacgccca
     8521 gcgcaaaagg atgattgatg acgctaaccg cctcaactaa gccatccggc gagcgagctt
     8581 caacacgcaa ccgtgggcta acgaccttcg ccccttgtcc atgtagagag tttacccaaa
     8641 agttgctaca ttcaggtaac aacgcagaca gtaatccccc ctcttcaacc tgaacttcat
     8701 gcgacggtgc atattgctgt tccaccggca gttcggatct tcccgatgtt ccagcaattc
     8761 aggctgttcg cacagcttgc gatgcaacga accaccggtt gccaccacca gttcttgtaa
     8821 accccggcag atggcgaaaa tggggatgcg cctttcgagt gcggcattaa ttatcgccat
     8881 gctcagaaga tcacgcccgg gatcggcgtc aggctcatcg ccgttttcac catataggtg
     8941 cggctgcaca ttgctgggac taccaggaag ataaatgcca tcgagtttcg gcaaaagttg
     9001 ttcaagtaac gacggttccg ccagcgcatg tggtagcgca attggcaagc cgcctgcgtg
     9061 gatgatggca ttcaggtact tttcttgcag agtctgggtc gcatgaccct taagcctgtt
     9121 cctgcacatt acgacaccga taaccggatt gttcattata tttttcatgc tcaatctcac
     9181 aaagtggact aaattatcgc cattactgcg ctttaaatga cctttatgtt caatattttt
     9241 tcaatctagc agtgggtttt catttttgca aactaaattt aacatttggc aaacatttag
     9301 tttgcataca gattcgaatg gtggtcatta tattttacgc tttgataacg agcggaaaac
     9361 aaaccaaagg cgaagaatca tggaaaccaa tatcgttgaa gtagagaact ttgttcagca
     9421 gccagaagag aggcggggta gcgcctttac gcaggaagtg aaacgctacc tggagcgcta
     9481 cccgaatacg caatatgttg atgttttact tactgatttg aatggttgct tccgtggaaa
     9541 acgtatccct gtttcaagcc tgaagaagtt ggagaaaggg tgttatttcc cggcctcggt
     9601 gtttgcaatg gatattctgg gcaacgtagt agaagaagcg ggtctgggtc aggaaatggg
     9661 cgagccggat cgtacttgtg ttcctgttct cggttcctta accccttctg ccgccgatcc
     9721 agagtttatc ggtcagatgc tcctgaccat ggtcgatgaa gatggcgctc cctttgacgt
     9781 tgagccgcgg aacgttctta accgcctgtg gcagcagcta cgccagcgcg gattgttccc
     9841 ggttgtagcg gtagagctgg agttctattt actggatcgt cagcgcgacg ctgaagggta
     9901 tctgcaaccg ccctgcgcgc ccggcaccga taaccgcaat acacaaagcc aggtttactc
     9961 cgttgataac ctcaaccact tcgccgacgt gctcaatgat attgatgaac tggcgcagtt
    10021 acagttaatt cccgccgacg gtgcggtcgc cgaagcctcg ccgggtcagt ttgaaatcaa
    10081 cctttaccat accgataacg tgctggaagc ctgcgatgat gcgctggcgc taaaactcct
    10141 ggtgcgtctg atggcagaaa agcataagat gcactccact tttatggcga agccgtatga
    10201 agagcacgcg ggcagcggga tgcatatcca tatcagtatg caaaataatc gtggcgagaa
    10261 tgtgctttct gacacagaag gcgaagattc gccgctgctg aaaaagatgc tcgccgggat
    10321 gattgacctg atgccgtcgt cgatggcgtt gctggcacca aacgtgaact cgtatcgccg
    10381 cttccagccg ggaatgtatg tgccgacgca ggcgtcgtgg ggccataaca accgcaccgt
    10441 cgccctgcgt attccgtgcg gcgaccgtca taatcaccgc gtggaatatc gcgtggcggg
    10501 tgccgatgcc aacccatatc tggtgatggc agcgattttt gccggtattt tgcatggcct
    10561 tgataacgag ctgccgttgc aggaagaagt cgaaggcaac gggctggaac aggaaggctt
    10621 acccttcccg attcgccaga gcgatgccct gggtgagttt atcgagaatg atcacctgcg
    10681 ccgctattta ggcgaacggt tttgccatgt gtatcacgcc tgtaaaaatg atgagctgtt
    10741 gcagtttgag cgcctcatca cagaaacaga aattgagtgg atgttgaaaa acgcatagta
    10801 ccccttgcgg ggttgtttca tcgacctgag cggagccagg cctgacattt gctggtaatc
    10861 cagacatttc ccggatgtcg cgttatggag cgcaggcggc aacgggcttc cgttaacgat
    10921 taagactgtg acgaggaaat gagatgatgc cgatgattaa atccccgcat ggcgagggag
    10981 gctgcgtatg cgcccctcct gctactgact ggactccgtc ccctttgctt cccttgctaa
    11041 acaggtttga tttcaggtcg acacgaccgc aaaccttatt acgcaggggg aggcagcaat
    11101 tatggctatt aattcaccac tgaatattgc tgcgcaaccc ggcaaaaccc gtctgcgaaa
    11161 atcactgaaa ttgtggcagg tggtgatgat gggtctggcc tatctcacgc cgatgaccgt
    11221 atttgatact tttggtattg tctccggcat tagcgacggt cacgttccgg cgtcctattt
    11281 gctggcgctg gcgggcgtgc tgtttaccgc tatcagctac ggcaaactgg ttcgccagtt
    11341 tccggaggcc ggttcggcct atacctacgc gcaaaagtcg attaacccgc acgtcggatt
    11401 tatggtcggc tggtcatcgc tgctggatta tctctttttg ccgatgatca acgtcttgtt
    11461 ggcgaaaatc tatctctccg ccctcttccc ggaagtgccg ccgtgggtgt gggtagtaac
    11521 cttcgtcgcc attttaaccg ccgcgaatct gaagagcatc aacctggtcg ctaacttcaa
    11581 taccctgttt gtactggtgc aaatctccat catggtggtg tttatcttcc tggtagttca
    11641 gggactgcat aaaggagaag gcgttggcac cgtctggtca cttcagccgt ttatcagcga
    11701 gaacgcgcac ctgatcccga ttattaccgg ggcgacgatt gtctgtttct ccttcctcgg
    11761 tttcgatgcg gtgaccacgc tttcggaaga gacgccggac gccgcacgcg tgatcccgaa
    11821 agccatcttc ctgacggcgg tctacggtgg cgttatcttt atcgcggcgt cgttctttat
    11881 gcagctgttc tttcccgata tcagccgctt taaagatccg gatgccgcac tgcctgaaat
    11941 tgcgctgtac gtcggcggca agctcttcca gtcgattttc ctctgcacca cgtttgtgaa
    12001 cacgttagcc tctggcctgg cttcacatgc cagcgtgtcg cgtctgctgt atgtgatggg
    12061 gcgtgacaat gtgtttccgg agcgcgtgtt tggctatgtg cacccaaaat ggcggactcc
    12121 ggcactcaac gtcattatgg tcgggattgt cgcgttgtcg gcgctgttct tcgatttagt
    12181 taccgccaca gcgttaatta acttcggtgc tctggtggcg tttaccttcg tgaatctgtc
    12241 ggtgtttaat catttctggc ggcgtaaagg aatgaataaa agctggaagg atcacttcca
    12301 ctatttgctg atgccgctgg ttggcgcgct gacggtgggt gtgctgtggg ttaacctcga
    12361 gtcaacgtca ctgacactcg gtctggtatg ggcttcgtta ggcggcgcat atttatggta
    12421 tctgatccgc cgctatcgca aagtgccgtt gtatgatggt gacagaacgc cggtgagtga
    12481 aacgtaatag tcggatgcgc ggcgcattat cctgccggag ggtaatgcac cgcgccatta
    12541 actataaaaa gatgtatgac ccggatcacg agtgctatca tccgccctta tgcttagcgc
    12601 attaacccca ggggcaaata atgaaccacg atatcccgct aaaatatttt gatattgccg
    12661 atgagtacgc gaccgaatgc gcagagcctg tcgcagacgc tgaacgcaca ccgctggccc
    12721 actacttcca gttactgctc acccgtttga tgaacaatga agagatcagc gaagaagccc
    12781 aacatgaaat ggctgctgaa gcggggatta atcccgtacg cattgatgag atcgcagagt
    12841 ttttgaatca atggggtaat gagtaattat ttaattgcag acgatcggtc agtatcgttg
    12901 tccggataaa gcgttcacgc cgcatccggc taacaatgac acgcactgca gcgtgcttta
    12961 atgggtttct cacgatcgta ccgctctgct cctcgctaag ttgttctgtg agttatagtt
    13021 atagaggaag cacgggtacg aatgttgaac agatggcgac gccacctgtt caacgaccaa
    13081 ccacacggcc ctcattacga cccctgaaca caaacggtaa tggcaaatgt cattaaatat
    13141 tagtaagata gcctctttac ataaaatccc ttaatattat gcgccaggta ttatcgtctc
    13201 ttttggtgat tgctggactt gtgagtggtc aggcaatcgc cgcgcctgaa tcccccccgc
    13261 atgctgatat ccgcgacagc ggttttgtct attgcgtcag cgggcaagtc aacaccttta
    13321 acccatccaa agcgagcagt gggttaattg tcgataccct tgccgcccag ttttatgatc
    13381 gactgctgga tgtcgatccc tatacctatc gcctgatgcc ggaacttgcc gaaagctggg
    13441 aagtactcga caacggcgcg acctatcgct tccacctgcg tcgcgatgtt ccgtttcaaa
    13501 aaaccgactg gtttactccc actcgtaaaa tgaatgccga cgatgtggtg tttaccttcc
    13561 agcgaatttt tgaccgcaac aacccgtggc ataacgtcaa cggcagcaac ttcccctact
    13621 tcgacagcct gcaatttgcc gataacgtga aaagcgtccg caaactggat aatcataccg
    13681 ttgagttccg actcgcccag ccggatgctt cttttttgtg gcacctcgca acccattatg
    13741 cttcggtcat gtcggcagaa tatgcccgga agttagagaa agaagatcgc caggagcaac
    13801 tcgaccgtca accggtcggc accggtccgt atcagttgtc ggaataccgc gccgggcaat
    13861 ttattcgcct acaacgtcat gatgacttct ggcgcggtaa accgttaatg ccgcaggtag
    13921 tggtggattt aggctccggc ggcaccggac gtctgtcgaa actcctgacc ggggaatgcg
    13981 acgttctggc ctggcctgct gccagccagc tatccatttt gcgtgacgac ccgcgcttgc
    14041 gtttaacgct gcgtcctggg atgaacgtcg cctatctggc atttaacacc gccaaaccgc
    14101 cgctaaataa tcccgctgtc cgccatgcac tggcactggc gattaataac cagcgcctga
    14161 tgcaatccat ctattatggt acggctgaaa cggcggcctc tattttaccg cgcgcctcgt
    14221 gggcctatga caacgaggct aaaattactg aatacaatcc ggcgaaatcg cgcgaacagt
    14281 tgaaggcgtt ggggctggaa aacttaacgc tgaaactgtg ggtgcccaca cgttcgcagg
    14341 cgtggaaccc cagtccactg aaaactgccg aactgattca ggcggatatg gcgcaggttg
    14401 gcgtaaaagt ggtgattgtg ccggtagaag gtcgctttca ggaggcgcgg ttgatggata
    14461 tgagccatga tctgacgtta tccggttggg cgacggacag taacgacccg gacagtttct
    14521 tccgtccttt actgagctgc gcggcaattc attcacagac caacctcgcc cactggtgcg
    14581 atccgaaatt cgacagcgtg ttgcgtaagg cgctctcctc gcagcagctg gcggcgcgta
    14641 ttgaagccta tgacgaagcg cagagtattc tggcgcagga attgcccatt ttgccgctgg
    14701 cgtcgtcatt gcgtttgcag gcctatcggt acgatatcaa aggtctggta cttagcccgt
    14761 ttggtaacgc ctcctttgct ggggtgtatc gcgagaaaca ggatgaggtg aaaaaaccat
    14821 gattatcttc accttacgcc gcattttgtt attgattgtc accttgttcc tgctgacctt
    14881 cgttggcttc agcttgagct atttcacccc tcatgcgccg ttacaaggcg cgtcactgtg
    14941 gaatgcctgg gtgttctggt ttaacggcct gatccactgg gattttggtg tttccagcat
    15001 taacggtcaa ccgattgccg aacagttaaa agaggtcttc ccggcgacga tggaactgtg
    15061 catcctcgcc ttcggttttg cgctgattgt tggcatcccc gtggggatga ttgccgggat
    15121 tacgcgccat aagtggcagg ataacttgat caacgccatc gccttactgg gcttttcaat
    15181 cccggtgttc tggctggcgc ttctgttgac gctgttttgt tcactcacgc taggttggtt
    15241 gcccgtttca gggcgtttcg atctgctcta cgaagtgaaa ccgattaccg gttttgcgtt
    15301 gattgatgcc tggctttcgg actcaccatg gcgggatgaa atgatcatga gcgcaatccg
    15361 ccatatgata ttgcccgtga tcaccctgtc ggttgcgcca acaactgaag tgatccgcct
    15421 gatgcgtatc agcactatcg aagtgtatga ccagaactat gtaaaagcgg cggcgacccg
    15481 cggtttgtcg cgctttacta ttttgcgtcg ccacgttctg cataacgcgt taccgccggt
    15541 tattcctcgc ctgggcttac agttttccac catgctgacg ctggcgatga tcaccgaaat
    15601 ggtttttagc tggccgggtt tagggcgctg gttaattaac gccatccgcc agcaggatta
    15661 cgcagccatt tccgccggag tgatggtgtg tggctcactg gtcattattg ttaacgtgat
    15721 ttctgatatt ttgggtgcca tggctaaccc tctgaaacat aaggaatggt atgccttacg
    15781 atagcgtata cagcgaaaag cgcccgccgg gcacgctgcg taccgcctgg cgcaaatttt
    15841 atagtgacgc ctctgcgatg gtcggcctgt acggctgcgc ggggctggct gtactgtgta
    15901 tttttggcgg ctggtttgcg ccttacggca tcgaccagca atttctcggt tatcaattat
    15961 tgccgccatc atggtcgcgc tatggcgaag tttctttctt cctggggact gacgacctcg
    16021 gacgcgatgt tttaagccgt ttactgagcg gagctgcgcc aaccgtgggt ggcgcatttg
    16081 tggtgacgct tgccgcgacg atctgtggcc tagtactggg caccttcgcc ggggcgacac
    16141 acggcctccg ctcagcggtg cttaaccata ttctggatac cttactggcg atcccttcgc
    16201 tgctgttggc aattatcgtt gtagcgtttg ccggaccgag tttgtcccac gctatgtttg
    16261 ctgtctggct ggcattgctg ccgcgtatgg tacgttcgat ttacagcatg gtgcatgacg
    16321 aactggaaaa agagtacgtt atcgccgccc gtctggatgg cgcatcaacg ctgaatattc
    16381 tctggtttgc tgtgatgcca aacatcaccg ccgggctggt caccgagatc acccgcgcac
    16441 tgtcgatggc aattctcgat atcgccgcgc tgggctttct cgatctcggc gcacaactcc
    16501 cctcgcctga atggggagcg atgctcggtg atgcgctgga actgatttat gtcgccccgt
    16561 ggactgtcat gctgccaggt gcggcaatta tgattagcgt gttgttggtt aacctccttg
    16621 gcgatggcgt tcgtcgtgcg attattgcgg gggtggaata atgccattac tcgatattcg
    16681 taacctgacc attgaattta aaaccggtga tgagtgggtt aaagccgtcg accgggtaag
    16741 tatgacctta accgaaggtg aaatccgcgg tcttgttggt gaatccggtt ccggcaagag
    16801 tttgattgcg aaagcgattt gtggggtgaa taaagataac tggcgtgtta ttgctgaccg
    16861 tatgcgtttt gatgatatcg atttgctgcg tctctccgca cgcgaacggc gcaaactggt
    16921 tggccataac gtgtcgatga ttttccagga accgcagtcg tgtcttgacc cttcagaacg
    16981 tgtgggtcgc cagttgatgc aaaacatccc agcctggacc tataaaggcc gttggtggca
    17041 gcgttttggc tggcgcaaac gccgtgccat tgaactgctg caccgcgtgg ggattaaaga
    17101 tcacaaagat gcgatgcgca gttttcccta tgagttgacc gaaggtgaat gtcagaaagt
    17161 gatgatagcc attgcactgg cgaatcaacc gcgtctgctg attgctgacg aaccgaccaa
    17221 ctcaatggag ccaacaaccc aggcgcaaat ctttcgcctg ctgacgcgtc tcaaccaaaa
    17281 cagcaatacc actattttgc ttatcagcca tgacttacaa atgcttagcc aatgggcgga
    17341 taaaattaac gtgctttact gcggtcaaac agtggaaacc gcgccgagta aggagttggt
    17401 gacgatgcca catcatcctt atacccaggc gctgatccgc gcgataccag acttcggcag
    17461 cgcgatgccg cataaaagtc gcctcaatac gctgcccggc gctatcccac tgctggaaca
    17521 gttaccgatt ggttgtcgtc tggggccacg ttgcccgtat gcacaacgag aatgcattgt
    17581 gacgccacgt ttgacggggg cgaaaaatca tctctatgcc tgtcatttcc cgctgaacat
    17641 ggagaaagag tgagatgatc gaaacgctgc ttgaagtgcg taatttaagt aaaacgttcc
    17701 gctaccggac cggctggttt cgccgtcaga ccgtagaagc ggtaaaaccc ttgagcttta
    17761 cgctacgtga aggccagaca ctggcgatta ttggcgagaa tggttcgggt aaatccacgc
    17821 tggcaaaaat gctggcggga atgatagagc ctaccagcgg cgagttattg attgacgatc
    17881 atccactgca ttttggcgat tattccttcc gcagtcagcg tattcgcatg atttttcagg
    17941 atccttcgac ctcgttgaat ccccgtcaac gtatctcgca aattctggat tttccactgc
    18001 gcctgaacac cgacctggaa ccggaacagc gtcgcaaaca gattattgaa acgatgcgta
    18061 tggttgggct gctaccggat cacgtcagtt actatccgca tatgttggca cccggacaaa
    18121 aacagcgtct gggtctggcg cgcgcgctga tattgcgccc aaaagtcatt attgccgatg
    18181 aagcactcgc ttcactggat atgtcgatgc gttcgcagtt gattaatctg atgctggagt
    18241 tacaggaaaa acagggcatt tcgtatattt atgttaccca gcatatcgga atgatgaagc
    18301 acattagcga ccaggtgctg gtgatgcatc agggcgaggt tgtcgagcga ggcagcaccg
    18361 cggatgtgct ggcatcgccg ctgcatgaac tcaccaaacg gctgattgcc gggcactttg
    18421 gcgaagcatt gacagcggat gcgtggcgta aagatcgcta attttctgaa tcctccttcc
    18481 agattatcca cctcattctg acaagagatt aaatcttgtc agaatgaggt gatggataaa
    18541 ataaaatcaa atgcgcgtga tttaagacgc aatctcactt tgcaggaacg aaagctctgg
    18601 cgatatcttc gcagccgacg ttttggtgat ttcaaatttc gccgtcaaca tccggtgggg
    18661 agctacattc tcgattttgc ttgctgctcg gcgcgcgtag tcgttgagct ggatggtggg
    18721 cagcatgatt tggcagttgc ctatgatacc aggcgcacta gctggcttga gtcgcagggc
    18781 tggaccgtgc tgcgtttctg gaataacgag attgattgta atgaggaggc ggtgctggag
    18841 attattctgc aggaactgaa ccgccgatca ccctcaccct gaaagggcga gggggccgac
    18901 cgagccgaat agctgttgtg gtgaaaacat ggagactgtg ctggagaata ttcggcaagg
    18961 tctgaaccat cccagccatc gccataaaag ggttaggggc tgtatgagcc tgtttgttgc
    19021 tggggtaaca atatttgcac aatatggtcc cctcgcccct ctggggagag ggttagtgta
    19081 aggggaaaag cgcccaccct gccgcagcct gctccggtcg gacctagcaa ctatagctac
    19141 tcacagccag gttgattata ataaccattt atctgttcgt actgtttact aaaacgacga
    19201 atcgcctgat tttcaggcac aacaagcatc aacaataagg attaaagcta tgggttttct
    19261 ttccggtaag cgcattctgg taaccggtgt tgccagcaaa ctatccatcg cctacggtat
    19321 cgctcaggcg atgcaccgcg aaggagctga actggcattc acctaccaga acgacaaact
    19381 gaaaggccgc gtagaagaat ttgccgctca attgggttct gacatcgttc tgcagtgcga
    19441 tgttgcagaa gatgccagca tcgacaccat gttcgctgaa ctggggaaag tttggccgaa
    19501 atttgacggt ttcgtacact ctattggttt tgcacctggc gatcagctgg atggtgacta
    19561 tgttaacgcc gttacccgtg aaggcttcaa aattgcccac gacatcagct cctacagctt
    19621 cgttgcaatg gcaaaagctt gccgctccat gctgaatccg ggttctgccc tgctgaccct
    19681 ttcctacctt ggcgctgagc gcgctatccc gaactacaac gttatgggtc tggcaaaagc
    19741 gtctctggaa gcgaacgtgc gctatatggc gaacgcgatg ggtccggaag gtgtgcgtgt
    19801 taacgccatc tctgctggtc cgatccgtac tctggcggct tccggtatca aagacttccg
    19861 caaaatgctg gctcattgcg aagccgttac cccgattcgc cgtaccgtta ctattgaaga
    19921 tgtgggtaac tccgcggcat tcctgtgctc cgatctctct gccggtatct ccggtgaagt
    19981 ggtccacgtt gacggcggtt tcagcatcgc tgcaatgaac gaactcgaat tgaaataatc
    20041 attctgttgg taaatattgg gcggcgttct gccgcccgtt atctctgtta tacctttctg
    20101 atatttgtta tcgccgatcc gtctttctcc ccttcccgcc ttgcgtcagg ataacgattt
    20161 cctttacgac caaggagcgc ccatggaaca acgccacatc accggcaaaa gccactggta
    20221 tcatgaaacg caatccagta ctgcggagta tgacgttctg cctctggtcc cggaagccgc
    20281 aaaggtcagc gatccctttc tgctcgacgt gatccttgat gaagaaacgc tagctccctt
    20341 cctttcatgg ctggtccctg cgcgcgttct tgcagtggaa ttgttccctg accagcttac
    20401 cgtgacccgt tcacagacct tcaccgctta tgaacgcttg tctacggccc tgacggttgc
    20461 tcaggtttgc ggcgtccagc ggttatgtaa ctactattcg gcgcgactta cgccgctccc
    20521 cgggcctgat tcctctaggg aaagcaatca taggttggca caaatcacgc aatatgcccg
    20581 ccaactggct agctcgcctt ctattatcga caaccgatcg cgccagcatc tgaatgacgt
    20641 cggtcttact gccagggact gtgtaatcat taaccaaatc attggtttta ttggctttca
    20701 ggcgcggacc attgcgacat ttcaggctta tctcgggcac ccggtacgct ggttacccgg
    20761 tctggaaata caaaactacg ccgacgcgtc actgtttgct gatgaatcaa tacgctggcg
    20821 aagcagctat gaggtggaaa aactacctga agagtacaca aaaagttcaa cagcagaact
    20881 ttgccaactg gccgaaacac actctctcca ccctatttca ctttcccttc tcgaaaggtt
    20941 gttaaacagt acacgggtta atacacagcc ggataataag cttgcggcgt tgttatgcgc
    21001 gcggataaat ggcagtcctg cttgttttgc cgcctgtatg gattcatcaa atgaatataa
    21061 aaaaatcagc ccccttctgc gcaagggcga aaatgaaatt aaccaatggg ctgaccgtca
    21121 ttctgttgag cacgctaccg ttcaggcgat acaatggctg acccgagcac ccgatcgctt
    21181 tagcaccgcc cagttcagcc ctttactcga acacgaacaa tcatcaacgc agattattaa
    21241 tctgctggta tggagcgggc tgtgtggctg gataaatcgc ttaaaaatcg cgttgggtga
    21301 gacatattaa ccttgccgcg tcagacagat tcgcgtaaaa ctgtcagccg ctctaatggc
    21361 caccaaaata gacaattatg tttcaggaca acccgctgct agcgcagctt aaacagcaac
    21421 tgcattccca gacgccacgc gctgaagggg tggtaaaagc cacagaaaaa ggctttggct
    21481 tcctggaagt cgacgcgcaa aaaagttatt tcattccgcc gccgcagatg aaaaaagtca
    21541 tgcatggcga ccgaattatc gcggtgatcc acagtgaaaa agaacgtgaa tccgcagagc
    21601 cagaagaact ggttgaaccg ttcctgactc gtttcgtggg taaagttcag ggcaaaaatg
    21661 accgtctggc catcgttcct gatcatccac tcttaaaaga cgccattcct tgccgcgcag
    21721 cccgtggcct gaaccacgag tttaaagaag gcgactgggc ggttgccgaa atgcgccgtc
    21781 atccgctgaa aggcgatcgt tctttctatg ctgaattgac acaatacatc acttttggtg
    21841 acgaccactt tgtaccgtgg tgggttacac ttgcgcgcca taatctggaa aaagaagcac
    21901 cagacggcgt cgctaccgaa atgctcgatg aaggtctggt tcgtgaagat ctgaccgcgc
    21961 tggattttgt caccatcgac agtgccagca cagaagatat ggatgacgcc cttttcgcta
    22021 aggcgttgcc ggatgacaaa cttcagctga ttgtggcgat tgccgatcca accgcgtgga
    22081 ttgctgaagg cagcaagctg gacaaagccg cgaaaattcg cgcattcacc aactatctgc
    22141 ctggcttcaa catccctatg ctgcctcgcg agctttctga cgatctctgc tcactgcgcg
    22201 ccaatgaagt ccgcccggta ctggcatgcc gcatgacgct ctccgctgat ggcgccattg
    22261 aagataatat cgaattcttt gccgccacca tcgaatccaa agcaaagctg gtgtatgacc
    22321 aggtttctga ctggctggaa aataccggtg actggcagcc tgaaagtgaa gcaattgccg
    22381 aacaagtccg tttgctagcg caaatttgcc aacgccgcgg cgagtggcgt cataaccacg
    22441 cactggtgtt taaagatcgc ccggattacc gctttattct cggtgaaaaa ggtgaagtgc
    22501 tggatatcgt cgccgagcct cgtcgcattg ccaaccgtat cgtcgaagaa gcgatgattg
    22561 ccgctaacat ttgtgcggcc cgcgtactgc gcgataagct cggttttggc atctataacg
    22621 tgcatatggg ctttgatccg gcgaatgccg acgcgctggc agcgttgctg aaaacgcacg
    22681 gtctgcatgt cgatgccgaa gaagtgctca cgctggacgg tttctgcaaa ctgcgtcgtg
    22741 aactggacgc gcaaccaact ggtttcctcg acagccgcat tcgtcgcttc cagtcatttg
    22801 ctgaaattag cactgaaccc ggtcctcact ttggcctcgg tctggaagca tacgccacct
    22861 ggacttcgcc gatccgtaaa tatggcgaca tgatcaacca ccgtctgctg aaagcggtta
    22921 tcaaaggcga aactgcgacg cgcccacagg atgaaatcac tgtccaaatg gccgagcgtc
    22981 gccgtctcaa ccggatggca gaacgtgatg ttggtgactg gttatacgca cgcttcctga
    23041 aagacaaagc cgggaccgac acccgtttcg cagcggaaat tgtcgatatc agccgtggcg
    23101 gcatgcgtgt gcgtttggtt gataacggcg ctatcgcctt tattccggca cctttcttac
    23161 acgctatgcg cgatgaactg gtttgcagcc aggaaaacgg cactgtacaa attaaaggtg
    23221 aaacggttta caaagtaact gacgttattg acgtcaccat tgccgaagtc cgcatggaaa
    23281 cccgcagcat tattgcgcgc ccggtcgcgt aatctccttt cacggcctat tcctcatgga
    23341 tgggccgttt atttccccgc tctaccttcg ttatatccag gcagattttt taactgactt
    23401 tcgtttgaaa actggcgttt ttccaaaact ggattacaaa taaatatata aaaaaacaat
    23461 gcgtttagcc gccgttaatt tcatgtaagt ca
//
LOCUS       DAJVSY010000054        23030 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.054, whole genome shotgun sequence.
ACCESSION   DAJVSY010000054 DAJVSY010000000
VERSION     DAJVSY010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 23030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23030
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.054"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..562)
                     /locus_tag="OQQ19_001899"
     CDS             complement(<1..562)
                     /locus_tag="OQQ19_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418580.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1803546.1"
                     /translation="MPHTIKKMSLIGLILMIFTSVFGFANSPSAYYLMGYSAIPFYIF
                     SALLFFIPFALMMAEMGAAYRKEEGGIYSWMNNSVGPRFAFIGTFMWFSSYIIWMVST
                     SAKVWVPFSTFLYGSDMTQHWRIAGLEPTQVVGLLAVAWMILVTVVASKGINKIARIT
                     AVGGIAVMCLNLVLLLVSITILLLNGG"
     gene            complement(781..1758)
                     /gene="epmA"
                     /locus_tag="OQQ19_001900"
     CDS             complement(781..1758)
                     /gene="epmA"
                     /locus_tag="OQQ19_001900"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000004771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HCS1803547.1"
                     /translation="MSETASWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMS
                     QATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNE
                     EMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLEID
                     PLSADKTQLREVAAKLNLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPAS
                     QASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQ
                     HPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDRA"
     gene            2083..3891
                     /gene="frdA"
                     /locus_tag="OQQ19_001901"
     CDS             2083..3891
                     /gene="frdA"
                     /locus_tag="OQQ19_001901"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HCS1803548.1"
                     /translation="MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS
                     HTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGC
                     PWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLD
                     ILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAL
                     SHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLG
                     EPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICE
                     LAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRL
                     GSNSLAELVVFGRMAGEQATERAATAGNGNEEAIEAQAAGVEQRLKDLVNQDGGENWA
                     KIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIE
                     LGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEY
                     SDVKITTLPPAKRVYGGEADAADKAEAANKKEKANG"
     gene            3884..4618
                     /gene="frdB"
                     /locus_tag="OQQ19_001902"
     CDS             3884..4618
                     /gene="frdB"
                     /locus_tag="OQQ19_001902"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur protein"
                     /protein_id="HCS1803549.1"
                     /translation="MAEMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYI
                     KDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERD
                     LVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACP
                     QFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKH
                     VDPAAAIQQGKVESSKDFLIATLKPR"
     gene            4629..5024
                     /gene="frdC"
                     /locus_tag="OQQ19_001903"
     CDS             4629..5024
                     /gene="frdC"
                     /locus_tag="OQQ19_001903"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HCS1803550.1"
                     /translation="MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELI
                     FGLFALKNGPDAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDE
                     KMGPEPIIKSLWAVTVVATIVILFVALYW"
     gene            5035..5394
                     /gene="frdD"
                     /locus_tag="OQQ19_001904"
     CDS             5035..5394
                     /gene="frdD"
                     /locus_tag="OQQ19_001904"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HCS1803551.1"
                     /translation="MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL
                     FPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFY
                     GLAAILTVVTLIGIVTI"
     gene            5457..6590
                     /locus_tag="OQQ19_001905"
     CDS             5457..6590
                     /locus_tag="OQQ19_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BlaEC family class C beta-lactamase"
                     /protein_id="HCS1803552.1"
                     /translation="MFKTTLCALLITASCSTFAAPQQINDIVHRTITPLIEQQKIPGM
                     AVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLS
                     DPATKYWPELTAKQWNGITLLHLATYTAGGLPLQMPDEVKSSSDLLRFYQNWQPAWAP
                     GTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWG
                     YREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLTPLDINEKTLQQGIQLAQSRYW
                     QTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAIKPPTPAVRASWVHKTGA
                     TGGFGSYVAFIPEKELGIVMLANKNYPNPARVAAACQILNALQ"
     gene            6679..7212
                     /gene="blc"
                     /locus_tag="OQQ19_001906"
     CDS             6679..7212
                     /gene="blc"
                     /locus_tag="OQQ19_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin Blc"
                     /protein_id="HCS1803553.1"
                     /translation="MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWY
                     EIARFDHRFERGLEKVTATYSLRDGGGLNVINKGYNPDREMWQQSEGKAYFTGAPTRA
                     ALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVAT
                     REGFDVSKFIWVQQPGS"
     gene            complement(7209..7526)
                     /gene="sugE"
                     /locus_tag="OQQ19_001907"
     CDS             complement(7209..7526)
                     /gene="sugE"
                     /locus_tag="OQQ19_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418572.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound efflux SMR
                     transporter SugE"
                     /protein_id="HCS1803554.1"
                     /translation="MSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMA
                     LLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKL
                     STH"
     gene            complement(7708..7854)
                     /gene="ecnB"
                     /locus_tag="OQQ19_001908"
     CDS             complement(7708..7854)
                     /gene="ecnB"
                     /locus_tag="OQQ19_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein toxin entericidin B"
                     /protein_id="HCS1803555.1"
                     /translation="MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAAT
                     KAQQ"
     gene            complement(7965..8090)
                     /gene="ecnA"
                     /locus_tag="OQQ19_001909"
     CDS             complement(7965..8090)
                     /gene="ecnA"
                     /locus_tag="OQQ19_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein antitoxin entericidin A"
                     /protein_id="HCS1803556.1"
                     /translation="MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS"
     gene            complement(8142..8708)
                     /gene="efp"
                     /locus_tag="OQQ19_001910"
     CDS             complement(8142..8708)
                     /gene="efp"
                     /locus_tag="OQQ19_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HCS1803557.1"
                     /translation="MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLR
                     RLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGD
                     NAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGA
                     VVKVPLFVQIGEVIKVDTRSGEYVSRVK"
     gene            8750..9799
                     /gene="epmB"
                     /locus_tag="OQQ19_001911"
     CDS             8750..9799
                     /gene="epmB"
                     /locus_tag="OQQ19_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000940527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HCS1803558.1"
                     /translation="MAHIVTLNTPSREDWLTQLADVVTDPDELLRLLNIDADEKLLAG
                     RSAKKLFALRVPRSFIDRMEKGNPDDPLLRQVLTSQDEFVVASGFSTDPLEEQHSVVP
                     GLLHKYHNRALLLVKGGCAVNCRYCFRRHFPYAENQGNKRNWQTALEYVAAHPELDEM
                     IFSGGDPLMAKDHELDWLLTQLEAIPHIKRLRIHSRLPIVIPARITDALVERFSHSTL
                     QILLVNHINHANEIDETFRQAMAKLRRVGVTLLNQSVLLRDVNDNAQTLANLSNALFD
                     AGVMPYYLHVLDKVQGAAHFMVSDDEARQIMRELLTLVSGYLVPKLAREIGGEPSKTP
                     LDLQLRQQLLIKQGS"
     gene            10173..11042
                     /locus_tag="OQQ19_001912"
     CDS             10173..11042
                     /locus_tag="OQQ19_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjeJ family protein"
                     /protein_id="HCS1803559.1"
                     /translation="MAISIKGVNTGVIRKSNNFIALALKIKEPRNKESLFFMSVMELR
                     DLLIALESRLHQKHKLDAAARLQYEQARDKVIKKMAENIPEILVDELKNADINRRVNT
                     LELTDNQGENLTFVLTLHDGSKCELVVNELQIEMLARAIIHAINNAEMRELALRITSL
                     LDFLPLYDVDCQENGNLEYDTYSQPEWKHNLFDHYLAVLYRFKDESGKEQFSGAVVKT
                     REATPGKEVEAITRRMLDFSPRLKKLAGVPCQVYVRTVAANNAQPLTQDQCLRALHHL
                     RVQSTSKTAPQAK"
     gene            complement(11245..11598)
                     /locus_tag="OQQ19_001913"
     CDS             complement(11245..11598)
                     /locus_tag="OQQ19_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418568.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4156 domain-containing protein"
                     /protein_id="HCS1803560.1"
                     /translation="MHVKYLAGIVGAALLMAGCSSSNELSAAGQSVRIVDEQPGAECQ
                     LIGTATGKQSNWLSGQHGEEGGSMRGAANDLRNQAAAMGGNVIYGISSPSQGMLSSFV
                     PTDSQIIGQVYKCPN"
     gene            complement(11736..13382)
                     /gene="groL"
                     /locus_tag="OQQ19_001914"
     CDS             complement(11736..13382)
                     /gene="groL"
                     /locus_tag="OQQ19_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120975.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HCS1803561.1"
                     /translation="MAAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSF
                     GAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITE
                     GLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGK
                     LIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESP
                     FILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAV
                     KAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIID
                     GVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEK
                     KARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAP
                     LRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAA
                     SVAGLMITTECMVTDLPKNDAADLGAAGGMGGMGGMGGMM"
     gene            complement(13426..13719)
                     /locus_tag="OQQ19_001915"
     CDS             complement(13426..13719)
                     /locus_tag="OQQ19_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000027827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HCS1803562.1"
                     /translation="MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVG
                     NGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA"
     gene            13995..15251
                     /gene="yjeH"
                     /locus_tag="OQQ19_001916"
     CDS             13995..15251
                     /gene="yjeH"
                     /locus_tag="OQQ19_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-methionine/branched-chain amino acid
                     transporter"
                     /protein_id="HCS1803563.1"
                     /translation="MSGLKQELGLAQGIGLLSTSLLGTGVFAVPALAAQVAGNNSLWA
                     WPVLIILVFPIAIVFAILGRHYPCAGGVAHFVGMAFGSRLERVTGWLFLSVIPVGLPA
                     ALQIAAGFGQAMFGWHSWQLLLAELGTLALVWYIGTRSASSSANLQTVIAGLIVALIV
                     AIWWAGDIKPANIPFPAPGNIELTGLFAALSVMFWCFVGLEAFAHLASEFKNPERDFP
                     RALMIGLLLAGLVYWGCTVVVLHFDAYGEKMAAAASLPKIVVQLFGVGALWIACVIGY
                     LACFASLNIYIQSFARLVWSQAQHNPDHYLARLSSRHIPNNALNAVLGCCVVSTLVIH
                     ALEISLDALIIYANGIFIMIYLLCMLAGCKLLQGRYRLLAVVGGLLCVLLLAMVGWKS
                     LYALIVLAGLWLLLPKRKTPENGIIT"
     gene            complement(15267..15743)
                     /gene="fxsA"
                     /locus_tag="OQQ19_001917"
     CDS             complement(15267..15743)
                     /gene="fxsA"
                     /locus_tag="OQQ19_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418564.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein FxsA"
                     /protein_id="HCS1803564.1"
                     /translation="MRWLPFIAIFLYVYIEISIFIQVAHVLGVLLTLVLVIFTSVIGM
                     SLVRNQGFKNFVLMQQKMAAGENPAAEMIKSVSLIIAGLLLLLPGFFTDFLGLLLLLP
                     PVQKHLTVKLMPHLRFSRMPGGGFSAGTGGGNTFDGEYQRKDDERDRLDHKDDRQD"
     gene            16080..17516
                     /gene="aspA"
                     /locus_tag="OQQ19_001918"
     CDS             16080..17516
                     /gene="aspA"
                     /locus_tag="OQQ19_001918"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313147.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HCS1803565.1"
                     /translation="MSNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDI
                     PEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGA
                     GTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSL
                     IKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNI
                     QRTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGA
                     YVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPE
                     VVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCIN
                     GITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTE
                     AELDDIFSVQNLMHPAYKAKRYTDESEQ"
     gene            17634..18935
                     /gene="dcuA"
                     /locus_tag="OQQ19_001919"
     CDS             17634..18935
                     /gene="dcuA"
                     /locus_tag="OQQ19_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuA"
                     /protein_id="HCS1803566.1"
                     /translation="MLVVELIIVLLAIFLGARLGGIGIGFAGGLGVLVLAAIGVKPGN
                     IPFDVISIIMAVIAAISAMQVAGGLDYLVHQTEKLLRRNPKYITILAPIVTYFLTIFA
                     GTGNISLATLPVIAEVAKEQGVKPCRPLSTAVVSAQIAITASPISAAVVYMSSVMEGH
                     GISYLHLLSVVIPSTLLAVLVMSFLVTMLFNSKLSDDPIYRKRLEEGLVELRGEKQIE
                     IKSGAKTSVWLFLLGVVGVVIYAIINSPSMGLVEKPLMNTTNAILIIMLSVATLTTVI
                     CKVDTDNILNSSTFKAGMSACICILGVAWLGDTFVSNNIDWIKDTAGEVIQGHPWLLA
                     VIFFFASALLYSQAATAKALMPMALALNVSPLTAVASFAAVSGLFILPTYPTLVAAVQ
                     MDDTGTTRIGKFVFNHPFFIPGTLGVALAVCFGFVLGSFML"
     gene            19051..19389
                     /gene="cutA"
                     /locus_tag="OQQ19_001920"
     CDS             19051..19389
                     /gene="cutA"
                     /locus_tag="OQQ19_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent cation tolerance protein CutA"
                     /protein_id="HCS1803567.1"
                     /translation="MLDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIP
                     GATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTD
                     YLSWLNASLR"
     gene            19365..21062
                     /gene="dsbD"
                     /locus_tag="OQQ19_001921"
     CDS             19365..21062
                     /gene="dsbD"
                     /locus_tag="OQQ19_001921"
                     /EC_number="1.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HCS1803568.1"
                     /translation="MAQRIFTLILLLCSTSVFAGLFDAPGRSQFVPADQAFTFDFQQN
                     QHDLNLTWQIKDGYYLYRKQIRITPEHAKIADVQLPQGVWHEDEFYGKSEIYRDRLTL
                     PVTINQASAGATLTVTYQGCADAGFCYPPETKTVPLSEVVANNAASQPVSVSQQEQHT
                     AQLPFSALWALLIGIGIAFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA
                     LTYTALGLVVAAAGLQFQAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLT
                     LMSNRQQGGSPGGVFVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL
                     GMGLPLMLITVFGNRLLPKSGPWMEQVKTAFGFVILALPVFLLERVIGDVWGLRLWSA
                     LGVAFFGWAFITSLQAKRGWMRVVQIILLAAALVSVRPLQDWAFGATHTAQTQTHLNF
                     TQIKTVDELNHALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQA
                     NITANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP"
     gene            21099..21674
                     /locus_tag="OQQ19_001922"
     CDS             21099..21674
                     /locus_tag="OQQ19_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1803569.1"
                     /translation="MQREDVLGEALKLLELQGIANTTLEMVAERVDYPLDELRRFWPD
                     KEAILYDALRYLSQQIDVWRRQLMLDETQTAEQKQLARYQALSECVKNNRYPGCLFIA
                     ACTFYPDPGHPIHQLADQQKSAAYDFTHELLTTLEVDDPAMVAKQMELVLEGCLSRML
                     VNRSQADVDTAHRLAEDILRFARCRQGGALT"
     gene            21781..21856
                     /locus_tag="OQQ19_001923"
     tRNA            21781..21856
                     /locus_tag="OQQ19_001923"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:21814..21816,aa:Phe,seq:gaa)
     gene            22054..>23030
                     /locus_tag="OQQ19_001924"
     CDS             22054..>23030
                     /locus_tag="OQQ19_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HCS1803570.1"
                     /translation="MALTDAKIRAAKPTDKAYKLTDGTGMFLLVHPNGSRYWRLRYRI
                     LGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIA
                     RRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEI
                     ASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGS
                     YKGQTVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGS
                     KMRTPHLVPLSKQAVAILTELQTWAGENGLIFTGAHDPRKPISENVMNAS"
BASE COUNT         5738 a         5943 c         5700 g         5649 t
ORIGIN      
        1 gcccaccatt taataacaaa atagtaatgc ttactaacag caatactaaa ttcagacaca
       61 ttactgcaat accgcccacc gcagtaatgc gggcaatttt attaatcccc tttgaagcaa
      121 cgacggtgac cagaatcatc catgctactg ccagcagacc aaccacctgc gtaggctcca
      181 gtccggcaat acgccagtgc tgggtcatgt cgctaccata gaggaatgtt gagaacggta
      241 cccaaacttt cgcggaggta ctcaccatcc agatgatata agaggaaaac cacataaacg
      301 taccaatgaa ggcaaaacgt ggtccgacac tattattcat ccaggaatag ataccacctt
      361 cttctttgcg ataagcagct cccatttcag ccatcattaa ggcgaatgga ataaagaata
      421 acaatgcaga aaatatataa aagggaatcg cactataacc cattaagtaa taagccgatg
      481 ggctattggc aaatccaaat acggaagtaa agatcatcaa tatgagtcct atcagactca
      541 tcttttttat cgtgtgaggc atgaaaccat ccttcatttc agcgcgtgta taacacgtgc
      601 ccactgaact gcactgcgca acattgagca ggcagcgtaa aaaccaatac agaattgata
      661 cccggatgat atcaaatatc cagtcttaaa ttgtggcctt taacggaaaa atgaaaacat
      721 atgctacaga atggcgctta tcacgccatt cttcgctgtt aattcagtaa tttttcagaa
      781 ttatgcccgg tcaacgctaa aggcgatgac ttcagccagt gtctccgcgc ccagcgccaa
      841 catcaccaga cgatcaacac ctaatgccac gccggaacag tcaggcatac cgactttcaa
      901 ggcttcaatc agattctggt caatggggtg ctgcggcaaa ccgcgcgccg cgcgcttacg
      961 gttatcttgt tcaaagcgtt gttgctgctc acgggcatcc gttaattcat ggaaaccatt
     1021 cgccagctca atacctttat aataaacctc aaagcgttca gcgacccgat gatcttcggt
     1081 actgatttgc gccagtgatg cctggctggc tggaaagtgg tacacaaagg tcggtttttc
     1141 tttgccaata tttggctcta cgccaaaggt aaacagcaat tgtagcaacg tgtcgcggtc
     1201 ttcttcggta tcagcaacgt tactcaaatt cagtttcgct gcgacttccc gcagttgcgt
     1261 tttgtcggca gagagcgggt caatttccag ataacgcaag aaagcttgtt gataagaaag
     1321 gctttctgct gccgggcagt ccagcacctg ttgtaagaga tcgtccacct cgttcatcaa
     1381 ccggtacata tcatagtgcg gtcgatacca ctcaagcata gtgaactcag ggttgtgata
     1441 acgccccatc tcttcattac ggaagctgcg gcacagctgg aataccggcc cacaaccggc
     1501 aaccagcagg cgtttcatat ggtattccgg gctggtcatt aaccagagat tcatcccctg
     1561 cgaatgcccg gggccaacga aacgtgtctc aaacgggacc aaatgaatat cggttaccgt
     1621 cgcctggctc atacaaggcg tctccacctc cagcactcca cgatcagcaa agaaacgacg
     1681 gatctccgcc ataatcgccg cgcgttttaa taagttagga atggatgcgc tcggctgcca
     1741 ggatgccgtt tcgctcatag ttaaatctcc agtttttgac aagggcacga agtctactcg
     1801 caacgcgacg gcgagacaaa ttttacgcag gaatcaaaca gcggtgggca gtgactaaaa
     1861 aaagcacgat ctgatggttt agtaattaaa ttaatcatct tcagtgataa tttagccctc
     1921 ttgcgcacta aaaaaatcga tctcgtcaaa tttcagactt atccatcaga ctatactgtt
     1981 gtacctataa aggagcagtg gaatagcgtt cgcagaccgt aactttcagg cacttaccct
     2041 gaagtacggg gctgtgggat aaaaacaatc tggaggaatg tcgtgcaaac ctttcaagcc
     2101 gatcttgcca ttgtaggcgc cggtggcgcg ggattacgtg ctgcaattgc tgccgcgcag
     2161 gcaaatccaa atgcaaaaat cgcactaatc tcaaaagtat acccgatgcg tagccatacc
     2221 gttgctgcag aagggggctc cgccgctgtc gcgcaggatc atgacagctt cgaatatcac
     2281 tttcacgata cagtagcggg tggcgactgg ttgtgtgagc aggatgtcgt ggattatttc
     2341 gtccaccact gcccaaccga aatgacccaa ctggaactgt gggggtgccc atggagccgt
     2401 cgcccggatg gtagcgtcaa cgtacgtcgc ttcggcggca tgaaaatcga gcgcacctgg
     2461 ttcgccgccg ataagaccgg cttccatatg ctgcacacgc tgttccagac ctctctgcaa
     2521 ttcccgcaga tccagcgttt tgacgaacat ttcgtgctgg atattctggt tgatgatggt
     2581 catgttcgcg gcctggtagc aatgaacatg atggaaggca cgctggtgca gatccgtgct
     2641 aacgcggtcg ttatggctac tggcggtgcg ggtcgcgttt atcgttacaa caccaacggc
     2701 ggcatcgtta ccggtgacgg tatgggtatg gcgctaagcc acggcgttcc gctgcgtgac
     2761 atggaattcg ttcagtatca cccaaccggt ctgccaggtt ccggtatcct gatgaccgaa
     2821 ggctgccgtg gtgaaggcgg tattctggtc aacaaaaatg gctaccgtta tctgcaagat
     2881 tacggcatgg gcccggaaac tccgctgggc gagccgaaaa acaaatatat ggaactgggt
     2941 ccacgcgaca aagtttctca ggccttctgg cacgaatggc gtaaaggcaa caccatctcc
     3001 acgccgcgtg gcgatgtggt ttatctcgac ttgcgtcacc tcggcgagaa aaaactgcat
     3061 gaacgtctgc cgttcatctg cgaactggcg aaagcgtacg ttggcgtcga tccggttaaa
     3121 gaaccgattc cggtacgtcc gaccgcacac tacaccatgg gcggtatcga aaccgatcag
     3181 aactgtgaaa cccgcattaa aggtctgttc gccgtgggtg aatgttcctc tgttggtctg
     3241 cacggtgcaa accgtctggg ctccaactcc ctggcggaac tggtggtctt cggccgtatg
     3301 gccggtgaac aagcgacaga gcgtgcagca actgccggta atggcaacga agaggcaatt
     3361 gaagcgcagg cagctggcgt tgaacaacgt ctgaaagatc tggttaacca ggatggcggc
     3421 gaaaactggg cgaagatccg cgacgaaatg ggcctagcaa tggaagaagg ttgcggtatc
     3481 taccgtacgc cggaactgat gcagaaaacc atcgacaagc tggcagagct gcaggaacgc
     3541 ttcaagcgcg tgcgcatcac cgacacctcc agcgtgttca acaccgacct gctctacacc
     3601 attgaactgg gccacggtct gaacgttgct gaatgtatgg cgcactccgc aatggcacgt
     3661 aaagagtccc gcggcgcaca ccagcgtctg gacgaaggtt gcaccgagcg tgacgacgtc
     3721 aacttcctca aacacaccct cgccttccgc gatgctgatg gcacgactcg cctggagtac
     3781 agcgacgtga agattactac gctgccgcca gctaaacgcg tttacggtgg cgaagcggat
     3841 gcagccgata aggcggaagc agccaataag aaggagaagg cgaatggctg agatgaaaaa
     3901 cctgaaaatt gaggtggtgc gctataaccc ggaagtcgat accgcaccgc atagcgcatt
     3961 ctatgaagtg ccttatgacg caactacctc attactggat gcgctgggct acatcaaaga
     4021 caacctggca ccggacctga gttaccgctg gtcctgccgt atggcgattt gtggttcctg
     4081 cggcatgatg gttaacaacg tgccaaaact ggcatgtaaa accttcctgc gtgattacac
     4141 cgacggtatg aaggttgaag cgttagctaa cttcccgatt gaacgcgatc tggtggtcga
     4201 tatgacccac ttcatcgaaa gtctggaagc gatcaaaccg tacatcatcg gcaactcccg
     4261 caccgcggat cagggtacta acatccagac cccggcgcag atggcaaagt atcaccagtt
     4321 ctccggttgc atcaactgtg gtctgtgcta cgccgcgtgc ccgcagtttg gcctgaaccc
     4381 agagttcatc ggtccggctg ccattacgct ggcgcatcgt tataacgaag atagccgcga
     4441 ccacggtaag aaggagcgta tggcgcagtt gaacagccag aacggcgtat ggagctgtac
     4501 tttcgtgggc tattgctccg aagtctgccc gaaacacgtc gatccggctg cggccattca
     4561 gcagggcaaa gtagaaagtt cgaaagactt tcttatcgcg accctgaaac cacgctaagg
     4621 agtgcaacat gacgactaaa cgtaaaccgt atgtacggcc aatgacgtcc acctggtgga
     4681 aaaaattgcc gttttatcgc ttttacatgc tgcgcgaagg cacggcggtt ccggctgtgt
     4741 ggttcagcat tgaactgatt ttcgggctgt ttgccctgaa aaatggcccg gacgcctggg
     4801 cgggattcgt cgacttttta caaaacccgg ttatcgtgat cattaacctg atcactctgg
     4861 cggcagctct gctgcacacc aaaacctggt ttgaactggc accgaaagcg gccaatatca
     4921 ttgtaaaaga cgaaaaaatg ggaccagagc caattatcaa aagtctctgg gcggtaactg
     4981 tggttgccac catcgtaatc ctgtttgttg ccctgtactg gtaaggagcc tgagatgatt
     5041 aatccaaatc caaagcgttc tgacgaaccg gtattctggg gcctcttcgg ggccggtggt
     5101 atgtggagcg caattattgc gccggtgatg atcctgctgg tgggtattct gctgccactg
     5161 gggctgtttc cgggtgatgc gctgagctac gagcgcgttc tggcgttcgc gcagagcttc
     5221 attggtcgcg tattcctgtt cctgatgatc gttctgccgc tgtggtgtgg tttacaccgt
     5281 atgcaccacg cgatgcacga tctgaaaatt cacgtgcctg cgggcaaatg ggttttctac
     5341 ggtctggctg ctatcctgac agttgtcacg ctgattggta tcgttacaat ctaacgtatc
     5401 gccaatgtaa atccggcccg cctatggcgg gccgttttgt atggaaacca gaccttatgt
     5461 tcaaaacgac gctctgcgcc ttattaatta ccgcctcttg ctccacattt gctgcccctc
     5521 aacaaatcaa cgatattgtg catcgcacaa ttaccccgct tatagagcaa caaaagatcc
     5581 ccggtatggc ggtggcggta atttatcagg gtaaacctta ttactttacc tggggctatg
     5641 cggacatcgc caaaaagcag cccgtcacac agcaaacgtt gtttgagtta ggttcggtca
     5701 gcaaaacatt tacgggcgtg cttggtggcg atgctattgc tcgaggggaa atcaagttaa
     5761 gcgatcccgc aacaaaatac tggcctgaac ttaccgctaa acagtggaat gggatcacac
     5821 tattacatct tgcgacctac accgctggcg gcctgccatt gcagatgccg gatgaagtga
     5881 aatcctcaag cgacttgctg cgcttctatc aaaactggca gcctgcatgg gctccaggaa
     5941 cacaacgtct gtatgccaac tccagtatcg gtttgttcgg cgcactggct gtgaagccgt
     6001 ctggtttgag ttttgagcag gcgatgcaaa ctcgtgtctt ccagccactc aaactcaacc
     6061 atacgtggat taatgtaccg cccgcagaag aaaagaatta cgcctgggga tatcgcgaag
     6121 gcaaggcagt tcatgtttcg ccaggggcgt tagatgctga agcttatggt gtgaagtcga
     6181 ccattgaaga tatggcccgc tgggtgcaaa gcaatttaac cccccttgat atcaatgaga
     6241 aaacgcttca acaagggata caactggcac aatctcgcta ctggcaaacc ggcgatatgt
     6301 atcagggcct gggctgggaa atgctggact ggccggtcaa tcctgacagc atcattaacg
     6361 gcagtgacaa taaaattgca ctggcagcac gcccggtaaa agcgattaag cccccaactc
     6421 ctgcagtacg cgcatcatgg gtacataaaa cgggggcgac cggcggattt ggtagctatg
     6481 tcgcgtttat tccagaaaaa gagctgggta tcgtgatgct ggctaacaaa aactatccca
     6541 atccagcgag agtcgccgcc gcctgtcaga ttctcaacgc tctacagtaa aatttcatcg
     6601 ggtccgaatt ttcggacctt ttctgcgctt ttccttgctg tcatctacac ttagaaaaaa
     6661 accagtaagg aaacatttat gcgcctgctc cctctcgttg ccgcagcgac agctgcattt
     6721 ctggtcgttg cctgcagttc tcctacgccg ccgcgtggcg tgacagtagt gaataatttc
     6781 gacgctaaac gctatctcgg tacctggtat gagattgccc gttttgatca ccgttttgaa
     6841 cgtggactgg aaaaagtcac cgcaacatac agtctgcgtg atggcggcgg cctgaatgtc
     6901 atcaataaag gctataaccc tgacagagaa atgtggcagc agagtgaagg gaaagcgtac
     6961 tttaccggcg caccaacacg cgctgcgctg aaagtgtcat tctttggtcc tttctatggc
     7021 ggttataacg tcattgcact tgatcgggaa taccgccatg cgctggtttg cggcccggac
     7081 cgcgactacc tgtggatact ctcccgcacg ccaaccattt ctgacgaagt gaaacaggag
     7141 atgctggcag tcgcgacccg ggaagggttt gatgtcagta agtttatttg ggtacagcag
     7201 cccggtagtt agtgagtgct gagtttcaga ccaataatcc ccaatacgat taacgccaga
     7261 ctcgccaggc gcatcgggtt agcggactca ccgagcagca caatgccggt gatagccgcg
     7321 ccgactgcgc caatacccgt ccacacggca taagccgtcc ctactggtaa cgatttcatc
     7381 gcccaggcaa gtagcgccat actgacaatc atcgccgtca cggtaataac actcggcgtc
     7441 aaacgactaa agccgtgggt atatttcagg ccaacggccc ataccacttc cagcagacca
     7501 gcaataacta agataatcca ggacatatca ggctccggag aattggggcc gtccccggtg
     7561 aaaagacgcg tttgcaggtc gtcctgcaaa gctgatggtt gaacggatat tttgccaggt
     7621 ggcaggggaa tttcaactat taccttagtg actatcgcag aaaaaacaaa cggcacgaca
     7681 cagctgtcgt accgttattg cttattgcta ttgctgcgct ttcgttgctg cgccagaaat
     7741 cgcgttaccg ccatcagaaa tgtcttcacc aacgccacgc gtggtgttgc aggcagttaa
     7801 tactgttgaa agcaccagaa cagaaaagat cgctgcaatt gtcttcttca ccataacgtc
     7861 ttccttttag gtaatgttat ttatgtttgc ctatagcaaa ttaataatag acaacatcgc
     7921 caaaaatgac ggaaatctga tgatttttcg gaagagaaga aaaattagct ggcagcgcga
     7981 gagatggagt tgccgagatg tttgatgtct tcgccgaaac cgcgagcggt gttacagccc
     8041 gtgagcagcg tactggcaag caaaacaaga acgataaggc gtttcatcat ctctgacctg
     8101 aataagtgat ggtgcagcct gcaggccgca ccacaaccgc attacttcac gcgagagacg
     8161 tattcaccag agcgggtatc cactttgatg acttcgccga tttgtacgaa cagcggaacc
     8221 ttaaccacag cgccagtaga cagggtagcc ggtttgccgc cagtacctgc ggtatcacct
     8281 ttcaggcccg gatcggtatc aacgatttcc agttcaacga agttcggcgg agtaacggag
     8341 atcggctgac cattccacag agttacgata cactctgcct gatccagcag ccatttagcg
     8401 ttatcgccaa ttgcttttgc atcagcagac agctgctcga aagtttcgtt gttcatgaag
     8461 tgccagaact caccgtcgtt gtacaggtaa gtcaggttca tatcgacaac atcagcgcct
     8521 tcagcggaat cagtagattt gaaggttttt tctacgcgag taccggtcag cagacgacgc
     8581 agtttaacgc gagcaaatgc ctggccttta cccggtttta cgaattcact cgcttcaacc
     8641 gcgtaaggtt cgccgtctaa catgatttta agaccagcac gaaaatcgtt gctatagtac
     8701 gttgccataa ggccctctga aatttgttaa ttggtagcta agccacaaaa tggcgcatat
     8761 tgtaacccta aataccccat ccagagaaga ttggttaacg caacttgccg atgttgtgac
     8821 cgatcctgat gaacttctgc gtcttttgaa tatagacgcg gacgaaaaac tgttggccgg
     8881 acgcagcgcc aaaaagctgt ttgccctgcg tgtgccccgc tcatttatcg atcgcatgga
     8941 gaaaggcaat ccggacgatc ctcttttgcg tcaggtactt acctcgcaag atgagtttgt
     9001 cgtcgcgtcc ggattctcca ccgacccact ggaagaacag cacagcgtag tgcctggttt
     9061 gttgcataaa taccacaacc gggcgctttt gctggtcaaa ggcggctgcg cggtaaattg
     9121 ccgctattgc ttccgtcgcc acttccccta tgccgaaaat cagggcaaca agcgtaactg
     9181 gcagactgca cttgagtatg ttgctgcgca tccggaactg gacgagatga ttttctccgg
     9241 cggcgatccg ctgatggcga aagatcacga gctggactgg ttgctcacac aactggaagc
     9301 catcccgcat atcaaacgtc tgcggattca cagtcgtctg ccgattgtga tcccggcacg
     9361 catcacagat gcgctggttg aacgcttttc acattctacg ctgcaaatcc tgctggtgaa
     9421 tcacatcaac catgccaatg agatagatga aacattccgt caggcgatgg ctaagttgcg
     9481 ccgggtaggc gttactttgc tgaaccagag cgttctgtta cgtgatgtga acgataacgc
     9541 acaaacgctg gcaaacctga gtaatgcgtt gttcgatgcc ggcgtgatgc cgtattacct
     9601 gcatgtgctc gataaagtac agggcgcagc gcattttatg gtgagtgatg acgaagcacg
     9661 gcagattatg cgtgagttgc tgacattggt gtcgggatat ctggtgccga aactggcgcg
     9721 agaaattggc ggcgaaccca gcaaaacgcc gctggatctc cagctacgcc agcagttact
     9781 gattaaacag ggaagttaaa cattaaaatt gcctgatgcg ctacgcttat caggcctaca
     9841 tcgtgcattg aaattgaatg gatttgcaat gaactgtagg ccggataagg cgtttacgcc
     9901 gcatccggca agagcaacaa acgcaagtac agcaacctgt cattaaactg agaaatttaa
     9961 tctttgcccg ttgcataacc tttaattatt catatgcatt gctgttgtta ctttttatat
    10021 agctaacacc aataattaac ctttcttttc tgtttatata gagtgagcac ggctatttat
    10081 gttattttaa caactattac taccaagccc atttatctgg cttataaatt aaaattaatt
    10141 atttaattga gaaatggtta gggagaacct acatggccat aagcatcaag ggtgttaata
    10201 ccggtgttat tcgcaagagt aataatttca ttgcactggc gctgaaaatt aaagaacctc
    10261 gcaataaaga atcgttgttc tttatgtctg tcatggaact gcgcgacctg ctgattgcgc
    10321 tggaaagtcg tctgcatcaa aagcataaac tggatgctgc tgcacgcctt cagtatgagc
    10381 aagctcgcga taaagtcatt aagaaaatgg cagaaaacat cccagaaatt ctggttgatg
    10441 agcttaaaaa tgccgatatt aatcgtcggg ttaacacgct ggaacttacc gataatcaag
    10501 gcgaaaatct taccttcgta ttaacgctac atgacggtag caaatgtgag ttagtcgtca
    10561 atgagttgca gattgaaatg ctagcgcgag caatcattca tgcaattaat aatgcggaaa
    10621 tgcgtgaact ggcattacgt attacctcac tgttagattt cctgccgtta tatgacgttg
    10681 actgccagga aaatggcaat ctggaatatg acacctattc ccaaccggaa tggaaacata
    10741 acttgttcga ccattatctg gcggtgcttt accgctttaa agatgaaagt ggcaaagaac
    10801 aatttagcgg cgcagtggtg aaaacgcgtg aagcaacgcc gggtaaagaa gtagaggcga
    10861 tcactcgccg aatgcttgat ttcagcccac gactgaaaaa actcgcgggt gtgccatgtc
    10921 aggtctatgt tcgcaccgta gcggcgaata acgcccaacc gctaacccag gatcaatgct
    10981 tacgcgcgct gcatcactta cgtgttcaat ccaccagcaa aactgcacca caggcgaaat
    11041 aatctcatct ttgctaatgc gaggctggag ccatccagcc tgaaatgact gataacgtga
    11101 tcgttggtca tgccggatgc ggcgtaaacg ccttatccgg cctacaaatt ctcaagcatt
    11161 caatcagttg caatgcctgc tgtaggcctg ataagcgaag cgcatcaggc aataatacgt
    11221 ttgtcaccca gcctctggat cacatcagtt cgggcactta taaacctgac cgataatctg
    11281 gctatccgtc gggacaaaac tggacaacat tccctgcgac gggctgctga tgccataaat
    11341 cacgttaccg cccattgcag ccgcctggtt gcgcagatcg tttgctgcgc cgcgcataga
    11401 accgccctct tctccgtgtt gcccggaaag ccagttgctt tgcttacctg tcgcagtacc
    11461 aatcagctgg cactctgcgc ctggctgctc gtccacaatg cgtacactct gaccggcagc
    11521 actcaattcg ttgctggagc tacaacccgc catcagtagc gcggcaccga caatccctgc
    11581 taagtatttt acgtgcatgt tattccccat aatcaatgag ctggacgcca ctcgcgtcgt
    11641 ccgtgtctga atcttatact agaaagatga ccaaaagaaa aacccccaga catttctgcc
    11701 cgggggtttg tttatttctg cgaggtgcag ggcaattaca tcatgccgcc catgccaccc
    11761 atgccgccca taccgccagc agcgcctaag tcagctgcat cgtttttcgg caggtcggta
    11821 accatgcact cggtggtgat catcaggcca gccacagaag ccgcgtactg cagagcagaa
    11881 cgggttactt tggttggatc caagataccc atgtcgatca tgttgccgta ttcttcggtt
    11941 gctgcgttgt aaccgtagtt gccgtcgccg cctttaacag tgttagcaac aacagacggt
    12001 tcttcgccgc agttcaatac gatctgacgc agcggagctt ccattgcacg cagtgcaact
    12061 ttgataccca cgttctggtc ttcgttctga ccacgcaggt cagccagttt agacgctacg
    12121 cggatcagcg caacaccacc accagcaacc acgccttctt ctaccgcagc acgggtcgcg
    12181 tgcagggcat cttcaacgcg tgcttttttc tctttcattt caacttcggt agcagcacct
    12241 actttgataa ctgcaacgcc gcctgccagt ttcgctacgc gctcctgcag tttttcacgg
    12301 tcgtagtcag aagttgcttc ttcaatctgc tgacggatct gagcaacacg gccctggatt
    12361 gcagcttctt cacccacgcc atcaatgatg gtggtggtgt ctttgttgat cacaacacgt
    12421 ttagcctgac ccaggtcttc cagggttgct ttttccagct ccataccgat ctcttcagag
    12481 attacggtac cgccagtcag ggttgcgata tcctgcagca tagctttacg gcgatcgccg
    12541 aagcccggag ctttaaccgc agcaactttc acgatgccac gcatggtgtt aacaaccaga
    12601 gttgccagcg cttcgccttc aacatcttca gcgatgatca gcagcggttt acctgcttta
    12661 gcaacggctt ccagaaccgg cagcatttcg cggatgttgg agattttctt gtcagccagc
    12721 aggatgaacg ggctttccag ttctactgcg ccagtttccg gcttgttgat gaagtaagga
    12781 gacaggtagc cacggtcgaa ctgcatacct tcaaccacgt ccagttcgtc ctgcagaccg
    12841 gtaccgtctt caacggtgat aacgccttct ttaccgactt tgtccatcgc ttcagcgatc
    12901 agtttaccta cggtttcgtc ggagttagcg gagatggtac caacctgagc aatcgcttta
    12961 gagtcagagc atggtacgga cagcgctttc agttcttcaa ctgcagcggt aacagctttg
    13021 tcgataccac gtttcaggtc catcgggttc atgcccgcag caactgcttt cagaccctca
    13081 gtgatgatag cctgagccag tacggttgca gtggtggtac cgtcgcctgc agcgtcgttc
    13141 gctttagagg caacttcttt caccatctgc gcacccatat tttcgaactt gtcttccagt
    13201 tcgatttcac gagcaacgga aacaccatct ttggtgatgg tcggtgcacc gaaagattta
    13261 tccagaacta cgttacggcc tttcggaccg agggtaactt tcactgcatc tgccagtacg
    13321 tttacgccgc gcagcatttt cacacgagcg tcgttaccga attttacgtc tttagctgcc
    13381 attatcttta ttccttaaat tcgtatgttc agtgtcgtgc gaggattacg cttcaacaat
    13441 tgccagaatg tcgctttcgg acatgatcaa cacttcttca ttgtcgatct tctcagattt
    13501 cacaccgtag ccatcgttga aaataacgat gtcgccaact ttcacatcca gcggcttcac
    13561 ttcgccattt tcaaggatac ggccattgcc gacagccagc acttcgccgc gggtggattt
    13621 agccgctgca gagccggtca gaacgatgcc gccagcagat ttagtttcaa cttctttacg
    13681 cttgacgatc acgcgatcat gcaatggacg aatattcatt gataactctc ctttgagaaa
    13741 gtccgtatct gttatgggtg acgccggagc ttacgtggtt tcccggctgg tgaccagaga
    13801 aatggggatg aggattcgcc ccttcaaggg ggaaaaagaa aaaaaattct gatcagcaca
    13861 aaatcgggtg aaaaccctga ttcacctcac atttcatcgc aatttcttca tcgccgtcat
    13921 aagcgaatct gattgtgcta ccatcgaaaa tctacgcagt tgcccaaaat ttgggcgcaa
    13981 tcggatatca acccatgagt ggactcaaac aagaactggg gctggcccag ggcattggcc
    14041 tgctatcgac gtcattatta ggcaccggcg tgtttgccgt tcctgcgtta gctgcacagg
    14101 tagcaggcaa taacagcctg tgggcgtggc ccgttttgat tatcttagtg ttcccgattg
    14161 cgattgtgtt tgcgattctg ggtcgccact atccctgcgc aggcggtgtc gcgcacttcg
    14221 tcggtatggc gtttggttcg cggcttgagc gagtcaccgg ctggttgttt ttatcggtca
    14281 ttcccgtggg tttgccagcc gcgctacaaa ttgccgccgg gttcggccag gcaatgtttg
    14341 gctggcatag ctggcaactg ttgttggcag aactcggtac gctggcgctg gtgtggtata
    14401 tcggtactcg cagtgccagt tccagtgcta atctacaaac cgttattgcc ggacttatcg
    14461 tcgcgctgat tgtcgctatc tggtgggcgg gcgatatcaa acctgcgaat atccccttcc
    14521 cggcacctgg taatatcgaa cttaccgggt tatttgctgc gttatcagtg atgttctggt
    14581 gttttgtcgg tctggaagca tttgcccatc ttgcctcgga atttaaaaat ccagagcgtg
    14641 attttcctcg cgcattgatg attggtctgc tgctggcagg attagtctac tggggctgta
    14701 cggtagtcgt cttacacttc gacgcctatg gtgaaaaaat ggcggcggca gcatcgcttc
    14761 caaaaattgt agtgcaactg ttcggtgtag gagcgttatg gattgcctgc gtgattggct
    14821 atctggcctg ctttgccagt ctcaacattt atatacagag cttcgcccgc ctggtctggt
    14881 cgcaggcgca acataatcct gaccactacc tggcacgcct ctcttctcgc catatcccga
    14941 ataatgccct caatgcggtg ctcggctgct gtgtggtgag cactttggtg attcatgctt
    15001 tagagatcag tctggacgct cttattattt atgccaatgg catctttatt atgatttatc
    15061 tgttatgcat gctggcaggc tgtaaattat tgcaaggacg ttatcgacta ctggcggtgg
    15121 ttggcgggct gttatgcgtt ctgttactgg caatggtcgg ctggaaaagt ctctatgcgc
    15181 tgatcgtgct ggcggggtta tggctgttgc tgccaaaacg aaaaacgccg gaaaatggca
    15241 taatcacata atccggcgtt tcgacattaa tcctggcgat cgtctttatg atcaaggcgg
    15301 tcgcgctcat catcctttcg ctggtactca ccatcaaaag tattaccgcc accggtcccg
    15361 gcgctaaaac cgccgcctgg catacgagaa aagcgcaaat gcggcatcaa cttcactgtc
    15421 agatgctttt gcaccggcgg taataaaagc agaagaccga ggaagtcggt gaaaaagccc
    15481 ggtaataaaa gcagcaaacc ggcaatgatc agcgaaacac ttttaatcat ctccgccgct
    15541 gggttttcac ccgccgccat tttttgctgc atcagcacga aattcttaaa gccctggtta
    15601 cgtaccagtg acatcccgat aactgacgtg aatataacca gcacgagggt cagcaatacc
    15661 cccaatacat gggcaacctg aataaagatt gaaatctcaa tatagacata aaggaaaatg
    15721 gcaataaaag gtaaccagcg caaaggtttc tcctgtaata gcagccggta aaacccggct
    15781 acctgaatgg gttgcgaatc gcgttcagct tatattgtgg tcattagcaa aatttcaaga
    15841 tgtttgcgca actatttttg gtagtaatcc caaagcggtg atctatttca caaattaata
    15901 attaaggggt aaaaaccgac acttaaagtg atccagatta cggtagaaat cctcaagcag
    15961 catatgatct cgggtattcg gtcgatgcag gggataatcg tcggtcgaaa aacattcgaa
    16021 accacatata ttctgtgtgt ttaaagcaaa tcattggcag cttgaaaaag aaggttcaca
    16081 tgtcaaacaa cattcgtatc gaagaagatc tgttgggtac cagggaagtt ccagctgatg
    16141 cctactatgg tgttcacact ctgagagcga ttgaaaactt ctatatcagc aacaacaaaa
    16201 tcagtgatat tcctgaattt gttcgcggta tggtaatggt taaaaaagcc gcagctatgg
    16261 caaacaaaga gctgcaaacc attcctaaaa gtgtagcgaa tgccatcatt gccgcatgtg
    16321 atgaagtcct gaacaacgga aaatgcatgg atcagttccc ggtagacgtc taccagggcg
    16381 gcgcaggtac ttccgtaaac atgaacacca acgaagtgct ggccaatatc ggtctggaac
    16441 tgatgggtca ccagaaaggt gaatatcagt acctgaaccc gaacgaccat gttaacaaat
    16501 gtcagtccac taacgacgcc tacccgaccg gtttccgtat cgcagtttac tcttccctga
    16561 ttaagctggt agatgcgatt aaccaactgc gtgaaggctt tgaacgtaaa gctgtcgaat
    16621 tccaggacat cctgaaaatg ggtcgtaccc agctgcagga cgcagtaccg atgaccctcg
    16681 gtcaggaatt ccgcgctttc agcatcctgc tgaaagaaga agtgaaaaat atccaacgta
    16741 ccgctgaact gctgctggaa gttaaccttg gcgcaacagc aatcggtact ggtctgaaca
    16801 cgccgaaaga gtactctccg ctggcagtga aaaaactggc tgaagtcact ggcttcccat
    16861 gcgtaccggc tgaagacctg atcgaagcga cctctgactg cggcgcttat gttatggttc
    16921 acggcgcgct gaaacgcctg gctgtgaaga tgtccaaaat ctgtaacgac ctgcgcttgc
    16981 tctcttctgg cccacgtgcc ggcctgaacg agatcaacct gccggaactg caggcgggct
    17041 cttccatcat gccagctaaa gtaaacccgg ttgttccgga agtggttaac caggtatgct
    17101 tcaaagtcat cggtaacgac accactgtta ccatggcagc agaagcaggt cagctgcagt
    17161 tgaacgttat ggagccggtc attggccagg ccatgttcga atccgttcac attctgacca
    17221 acgcttgcta caacctgctg gaaaaatgca ttaacggcat cactgctaac aaagaagtgt
    17281 gcgaaggtta cgtttacaac tctatcggta tcgttactta cctgaacccg ttcatcggtc
    17341 accacaacgg tgacatcgtg ggtaaaatct gtgccgaaac cggtaagagt gtacgtgaag
    17401 tcgttctgga acgcggtctg ttgactgaag cggaacttga cgatattttc tccgtacaga
    17461 atctgatgca cccggcttac aaagcaaaac gctatactga tgaaagcgaa cagtaatcgt
    17521 acagggtagt acaaataaag aaggcacgtc agatgacgtg ccttttttct tgtgaacagt
    17581 aacttaaaaa caacaaccta atatcaactt gttaaaaaac aaggaaggct aatatgctag
    17641 ttgtagaact catcatagtt ttgctggcga tcttcttggg cgccagattg gggggaatag
    17701 gtattggttt tgcaggcgga ttgggggtgc tggttcttgc cgctattggc gttaaacccg
    17761 gtaacatccc gttcgatgtc atttccatta tcatggcggt tatcgccgct atttctgcca
    17821 tgcaggttgc tggcggtctg gactatctgg ttcatcagac agaaaagctg ctgcgccgta
    17881 acccgaaata catcacgatc ctcgcaccta tcgtgaccta tttcctgaca atctttgctg
    17941 gtactggcaa catctctctg gcgacactgc cagttatcgc tgaagttgcg aaggaacaag
    18001 gcgttaaacc ttgccgtccg ctctctactg cagtggtatc cgcgcagatt gcgatcaccg
    18061 catcgccaat ctcagcggca gtggtttaca tgtcttccgt gatggaaggt catggcatca
    18121 gctacctcca tctgctctcc gtggtcatcc cgtccaccct gctggcggtt ctggtgatgt
    18181 cctttctggt cactatgctg ttcaactcca aactctctga cgatccgatt tatcgcaagc
    18241 gtctggaaga gggcctggtt gaactgcgcg gtgaaaagca gattgaaatc aaatccggtg
    18301 caaaaacgtc cgtctggctg ttcctgctgg gcgtagttgg cgtggttatc tatgcaatca
    18361 tcaacagccc aagcatgggt ctggttgaaa aaccgctgat gaacaccacc aacgcaatcc
    18421 tgatcatcat gctcagcgtt gcaactctga ccaccgttat ctgtaaagtc gataccgaca
    18481 acatcctcaa ctccagcacc ttcaaagcag gtatgagcgc ctgtatttgt atcctgggtg
    18541 ttgcgtggct gggcgatact ttcgtttcca acaacatcga ctggatcaaa gataccgctg
    18601 gtgaagtgat tcagggtcat ccgtggctgc tggccgtcat cttcttcttt gcttctgctc
    18661 tgctgtactc tcaggctgca accgcaaaag cactgatgcc gatggctctg gcactgaacg
    18721 tttcaccgct gaccgctgtt gcttctttcg ctgcggtgtc tggtctgttc attctgccga
    18781 cctacccgac gctggttgct gcggtacaga tggatgacac gggtactacc cgtatcggta
    18841 aattcgtctt caaccatccg ttcttcatcc cgggtactct gggtgttgcc ctggccgttt
    18901 gcttcggctt cgtgctgggt agcttcatgc tgtaatgatc aatcgcgggg cgttcacgcc
    18961 ccgctttctt tcccgccgac taacatcctt cccccgtacg ttgtatagtg acctctctct
    19021 tgcggttcca tctgttcttg cgaggtgttt atgcttgatg aaaaaagttc gaataccgcg
    19081 tctgtcgtgg tgctatgtac ggcaccagat gaagcgacag cccaggattt agctgccaaa
    19141 gtgctggcgg aaaaactggc ggcctgcgcg accttgatcc ccggcgctac ctctctctat
    19201 tactgggaag gtaagctgga gcaagaatac gaagtgcaga tgattttaaa aactaccgta
    19261 tctcaccagc aggcactgct ggaatgcctg aagtctcatc atccatatca aaccccggaa
    19321 cttctggttt tacctgttac acacggagac acagattacc tctcatggct caacgcatct
    19381 ttacgctgat cctgctactt tgcagcactt ccgtttttgc cggattattc gacgcgccgg
    19441 gacgttcaca atttgtcccc gcggatcaag cctttacttt tgattttcag caaaaccaac
    19501 atgaccttaa tctgacctgg cagatcaaag acggttacta cctctaccgt aaacagatcc
    19561 gcattacgcc ggaacacgcg aaaattgccg acgtgcagct gccgcaaggc gtctggcatg
    19621 aagatgagtt ttacggcaaa agcgagattt accgcgatcg gctgacgctt cccgtaacca
    19681 tcaaccaggc gagtgcggga gcgacgttaa ctgtcaccta ccagggctgt gctgatgccg
    19741 gtttctgtta tccgccagaa accaaaaccg ttccgttaag cgaagtggtc gccaacaacg
    19801 cagcgtcaca gcctgtgtct gtttcgcagc aagagcagca caccgcgcaa ttgccctttt
    19861 ccgcgctctg ggcgttgttg atcggtattg gtatcgcctt tacgccatgc gtgctgccaa
    19921 tgtacccact gatttctggc atcgtgctgg gtggtaaaca gcggctctcc actgccagag
    19981 cattgttgct gacctttatt tatgtgcagg ggatggcact gacttacacg gcgctgggtc
    20041 tggtagttgc cgccgcaggg ttacagttcc aggcggcgct acagcaccca tacgtgctca
    20101 ttggcctcgc catcgtcttt accttgctgg cgatgtcaat gtttggcttg tttactctac
    20161 aactcccctc ttcgctgcaa acacgtctca cgttgatgag caatcgccaa cagggcggct
    20221 cacctggcgg tgtgtttgtt atgggggcga ttgccggact tatctgttca ccatgcacca
    20281 ccgcaccgct tagcgcgatt ctgctgtata tcgcccaaag cgggaacatg tggctgggcg
    20341 gcggcacgct ttatctctat gcgttgggca tgggcctgcc gctgatgcta attaccgtct
    20401 ttggtaaccg cttgctgccg aaaagcggcc cgtggatgga acaagtcaaa accgcgtttg
    20461 gttttgtgat cctcgcactg ccggtcttcc tgctggagcg agtgattggt gatgtatggg
    20521 gattacgctt gtggtcggcg ctgggtgtcg cattctttgg ctgggccttt atcaccagcc
    20581 tacaggctaa acgcggttgg atgcgcgtgg tgcaaataat cctgctggca gcggcattgg
    20641 ttagcgtgcg cccacttcag gattgggcat ttggtgcgac gcataccgcg caaactcaga
    20701 cgcatctcaa ctttacacaa atcaaaacgg tagatgagtt aaatcatgcg ctcgttgaag
    20761 ccaaaggcaa accggtgatg ttagatcttt atgccgactg gtgcgtcgcc tgtaaagagt
    20821 ttgagaaata caccttcagc gacccgcagg tgcaaaaagc gttagcagac acggtcttac
    20881 ttcaggccaa catcacggcc aacgacgcac aagatgtggc gctgttaaag catcttaatg
    20941 tccttggcct accgacaatt ctcttttttg acggacaagg ccaggagcat ccacaagcac
    21001 gcgtcacggg ctttatggat gctgaaacct tcagcgcaca tttgcgcgat cgccaaccgt
    21061 gaacgacact tgcagcggga aagacggagg aaaatagcgt gcaacgtgaa gatgtactgg
    21121 gagaagccct gaaattatta gaattacaag ggattgccaa caccacgctg gagatggttg
    21181 ctgaacgtgt ggattatcca ctggacgagc tacgccgctt ctggccagac aaagaggcaa
    21241 tcctctacga tgcgctgcgt tatcttagcc aacagataga tgtctggcgt cgtcagctga
    21301 tgctggacga aacgcaaacc gccgaacaaa agcagctggc acgttatcag gcgttatcgg
    21361 agtgcgttaa aaacaaccgc tatccgggct gtctatttat cgctgcctgt acgttttatc
    21421 ccgatcctgg ccaccctatt catcaactgg ccgatcagca aaaaagcgcg gcctacgatt
    21481 tcacccacga actgttaacc acactggaag ttgacgatcc ggcgatggta gcaaagcaga
    21541 tggaactggt gctggaaggc tgtttaagcc gaatgctggt gaatcgtagc caggcggatg
    21601 tcgacactgc acatcggctg gcggaagata tcctgcgctt cgcccgctgc cgccagggtg
    21661 gtgcattgac ctgacagaaa cacagaaaag aagcgatttg ccgcaatctt aagcagttga
    21721 atcgctttta ctgaaattag gttgacgaga tgtgcagatt acggtttaat gcgccccgtt
    21781 gcccggatag ctcagtcggt agagcagggg attgaaaatc cccgtgtcct tggttcgatt
    21841 ccgagtccgg gcaccaaatt catatcaacg gacctctacg gaggttcgtt tttcgtttca
    21901 gaacgccacg atttaagcgt tctgcctaca aatcaattct accgaactca accagattcc
    21961 ccccacatca accccattgt gtgggtataa ttgcgggcat accccagttc gacagaattt
    22021 gtaccctctt taacgcattc agaaggctga actatggcac tgactgacgc aaaaatccgg
    22081 gctgcaaagc ccactgacaa ggcttataaa ctcactgacg ggactggcat gttcctgctg
    22141 gtacatccta atggctcccg ttactggcgt ctccgttatc gtattctggg taaggagaag
    22201 actctggcac ttggtgtgta tccagaagtt tctctctccg aagctcgtac aaaacgggat
    22261 gaggcccgaa aactgatttc ggagggggtt gacccttgcg aacagaaaag agctaaaaaa
    22321 gtagtccctg atttacagct ctcttttgaa catattgcgc gacgctggca tgccagtaat
    22381 aaacaatggg cacaatcaca cagcgataaa gtactcaaaa gcctcgagac tcacgttttc
    22441 ccctttatcg gcaaccggga tatcacaaca ctcaataccc cggatctgct tatccctgtt
    22501 cgtgctgcag aagctaaaca aatttatgaa atcgccagtc gtctgcagca aagaatatct
    22561 gccgtaatgc gttatgccgt acagtctggc atcatcagat ataatcctgc tctggatatg
    22621 gctggcgcat tgactacggt aaaacgccag catcgccccg ctcttgatct ttctcgcctg
    22681 cctgaacttt tgtcgcgtat tggcagttac aaagggcaaa ctgtcaccca gcttgccgtt
    22741 atgctgaatt tactggtttt tattcgttcc agtgaactca gatacgcccg ctggtctgaa
    22801 attgatattg acaatgccat gtggactatt ccagccgaac gcgaacccct gccaggcgta
    22861 aaattctcac accggggctc caagatgcga acaccacatc ttgtgccact cagcaaacag
    22921 gctgtagcca tactgacaga actacagaca tgggctggtg aaaatggtct gatctttacg
    22981 ggagcacatg acccgcgtaa accaatcagt gaaaatgtaa tgaacgcatc
//
LOCUS       DAJVSY010000055        22931 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.055, whole genome shotgun sequence.
ACCESSION   DAJVSY010000055 DAJVSY010000000
VERSION     DAJVSY010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22931)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22931)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22931
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.055"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..745)
                     /gene="fsr"
                     /locus_tag="OQQ19_001925"
     CDS             complement(<1..745)
                     /gene="fsr"
                     /locus_tag="OQQ19_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fosmidomycin MFS transporter"
                     /protein_id="HCS1803571.1"
                     /translation="MAMSEQTQPVAGAAASTTKARTSFGILGAISLSHLLNDMIQSLI
                     LAIYPLLQSEFSLTFMQIGMITLTFQLASSLLQPVVGYWTDKYPMPWSLPIGMCFTLS
                     GLVLLALAGSVGAVLLAAALVGTSSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFG
                     SSLGPLLTAVIIAPYGKGNVAWFVLAALLAIVVLAQISRWYSAQHRMNKGKPKATIIN
                     PLPRNKVVLAVSILLILIFSKYFYMASISS"
     gene            963..2615
                     /gene="ushA"
                     /locus_tag="OQQ19_001926"
     CDS             963..2615
                     /gene="ushA"
                     /locus_tag="OQQ19_001926"
                     /EC_number="3.1.3.5"
                     /EC_number="3.6.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HCS1803572.1"
                     /translation="MKLLQRGVALALLTTFTLASETALAYEQDKTYKITVLHTNDHHG
                     HFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFR
                     GMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKR
                     QDLKIAVIGLTTDDTAKIGNPEYFTDVEFRKPADEAKLVIQELQQTEKPDIIIAATHM
                     GHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQAPVCMAAENKKQVDYVPGTPCK
                     PDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWEDGKSERVL
                     YTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAA
                     QMDRTGADFAVMSGGGIRDSIEAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAV
                     AQMKPDSGAYPQFANVSFVTKDGKLNDLKIKGEPVDPAKTYRMATLNFNATGGDGYPR
                     LDNKPGYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSWQ"
     gene            complement(2652..3131)
                     /gene="ybaK"
                     /locus_tag="OQQ19_001927"
     CDS             complement(2652..3131)
                     /gene="ybaK"
                     /locus_tag="OQQ19_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK"
                     /protein_id="HCS1803573.1"
                     /translation="MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQV
                     YKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVEMADPMAAQRSTGYLVGG
                     ISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARRD"
     gene            complement(3335..4129)
                     /locus_tag="OQQ19_001928"
     CDS             complement(3335..4129)
                     /locus_tag="OQQ19_001928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HCS1803574.1"
                     /translation="MDLLYRVKTLWAALRGNHYTWPAIDITLPGNRHFHLIGSIHMGS
                     HDMTPLPTRLLKKLKNADALIVEADVSTSDTPFANLPTCEALEERINEEQLQNLQHIS
                     QEMGISPSLFSTQPLWQIAMVLQATQAQKLGLRAEYGIDYQLLQAAKQQHKPVIELEG
                     AENQITMLLQLPDKGLALLDDTLTHWHTNARLLQQMMSWWLNAPPQNNDITLPNTFSQ
                     SLYDVLMHQRNLAWRDKLRAMPPGRYVVAVGALHLYGEGNLPQMLR"
     gene            4267..4608
                     /locus_tag="OQQ19_001929"
     CDS             4267..4608
                     /locus_tag="OQQ19_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HCS1803575.1"
                     /translation="MKQATRKPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSTL
                     INNNRKLTTEMAFRLAKVFDTTVDFWLNLQAAVDLWEVENNMRTQEELGRIETVAEYL
                     ARREERAKKVA"
     gene            complement(4823..7327)
                     /gene="copA"
                     /locus_tag="OQQ19_001930"
     CDS             complement(4823..7327)
                     /gene="copA"
                     /locus_tag="OQQ19_001930"
                     /EC_number="7.2.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-exporting P-type ATPase CopA"
                     /protein_id="HCS1803576.1"
                     /translation="MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSITEAHVT
                     GTASAEQLIETIKQAGYDASVSHPKAKPLAESSIPSEALTAVSEALPAATADDDDSQQ
                     LLLSGMSCASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYG
                     AEAIEDDAKRRERQQETAVATMKRFRWQAIVALAVGIPVMVWGMIGDNMMVTADNRSL
                     WLVIGLITLAVMVFAGGHFYRSAWKSLLNGAATMDTLVALGTGVAWLYSMSVNLWPQW
                     FPMEARHLYYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTAEGEK
                     SVPLAEVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEPIPQQKGEGESVHAGT
                     VVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALI
                     SAAIWYFFGPAPQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDA
                     DALQRASTLDTVVFDKTGTLTEGKPQVVAVKTFADVDEAQALRLAAALEQGSSHPLAR
                     AILDKAGDMQLPQVNGFRTLRGLGVSGEAEGHALLLGNPALLNDQQVDTKAIEADISA
                     QASQGATPVLLAIDGKVVALLAVRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANA
                     IAKEAGIDEVIAGVLPDGKAEAIKRLQSEGRQVAMVGDGINDAPALAQADVGIAMGGG
                     SDVAIETAAITLMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSIGIPVAAGILWP
                     FTGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKE"
     gene            7589..8521
                     /gene="glsA"
                     /locus_tag="OQQ19_001931"
     CDS             7589..8521
                     /gene="glsA"
                     /locus_tag="OQQ19_001931"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase A"
                     /protein_id="HCS1803577.1"
                     /translation="MLDANKLQQAVDQAYTQFHSLNGGQNADYIPFLANVPGQLAVVA
                     IVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVI
                     ALELHGGKPLSPLVNAGAIATTSLINAENIEQRWQRILHIQQQLAGEQVALSDEVNQS
                     EQTTNFHNRAIAWLLYSAGYLYCDAMEACDVYTRQCSTLINTVELATLGATLAAGGLN
                     PLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGI
                     AAFSPPLDEEGNSVRGQKMVASVAKQLGYNVFKG"
     gene            8524..9816
                     /locus_tag="OQQ19_001932"
     CDS             8524..9816
                     /locus_tag="OQQ19_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1803578.1"
                     /translation="MMNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEA
                     STWVAFAFGGIVAMFSGYAYARLGASYPSNGGIIDFFRRGLGNGVFSLALSLLYLLTL
                     AVSIAMVAHAFGAYAVQFLHEGSQEEHLILLYALGSIAVMTLFNSLSNHAVGRLEVIL
                     VGIKMMILLLLIIAGVWSLQPAHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADK
                     VKDPQVIMPRAFLVAIGVTTLLYISLALVLLSDVSALELEKYADTAVAQAASPLLGHV
                     GYVIVVIGALLATASAINANLFAVFNIMDNMGSERELPKLMNKSLWRQSTWGNIIVVV
                     LIMLMTAALNLGSLASVASATFLICYLAVFVVAIRLRHDIHASLPILIVGTLVMLLVI
                     VGFIYSLWSQGSRALIWIIGSLLLSLIVAMVMKRNKTV"
     gene            9941..10348
                     /gene="cueR"
                     /locus_tag="OQQ19_001933"
     CDS             9941..10348
                     /gene="cueR"
                     /locus_tag="OQQ19_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(I)-responsive transcriptional regulator"
                     /protein_id="HCS1803579.1"
                     /translation="MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHL
                     NELTLLRQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMR
                     DQLLALANACPGDDSADCPIIENLSGCCHHRAG"
     gene            complement(10349..10807)
                     /locus_tag="OQQ19_001934"
     CDS             complement(10349..10807)
                     /locus_tag="OQQ19_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415021.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HCS1803580.1"
                     /translation="MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGL
                     VVWLVPLGWEWQGVMFAILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFV
                     LESPLVNGRGHMRVGDSSWPVSASEDLGAGTHVEVIAIEGITLHIRAVSS"
     gene            complement(10804..11721)
                     /locus_tag="OQQ19_001935"
     CDS             complement(10804..11721)
                     /locus_tag="OQQ19_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH/Band 7/PHB domain protein"
                     /protein_id="HCS1803581.1"
                     /translation="MLIFIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPG
                     LSLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVS
                     NLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIR
                     DVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSA
                     FLQAEARERSAEAEARATKMVSEAIASGDIQAVNYFVAQKYTEALQQIGSSSNSKVVM
                     MPLEASSLMGSIAGIAELVKDSANKRTQP"
     gene            11867..12544
                     /gene="fetA"
                     /locus_tag="OQQ19_001936"
     CDS             11867..12544
                     /gene="fetA"
                     /locus_tag="OQQ19_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter ATP-binding protein FetA"
                     /protein_id="HCS1803582.1"
                     /translation="MQENSPLLQLQNVGYLAGDAKILNNINFSLRAGEFKLITGPSGC
                     GKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEIYRQQVSYCAQTPTLFGDTVYDNLI
                     FPWQIRNRQPDPAIFLDFLERFALPDSILTKNIAELSGGEKQRISLIRNLQFMPKVLL
                     LDEITSALDESNKHNVNEMIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQ
                     EARYELA"
     gene            12531..13310
                     /gene="fetB"
                     /locus_tag="OQQ19_001937"
     CDS             12531..13310
                     /gene="fetB"
                     /locus_tag="OQQ19_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308581.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron export ABC transporter permease subunit
                     FetB"
                     /protein_id="HCS1803583.1"
                     /translation="MNSHNITNESLALALMLVVVAILISHKEKLALEKDIFWSVGRAI
                     IQLIIVGYVLKYIFSVDDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVG
                     AGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKL
                     SLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQ
                     IMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVTQLKKK"
     gene            complement(13373..14227)
                     /gene="cnoX"
                     /locus_tag="OQQ19_001938"
     CDS             complement(13373..14227)
                     /gene="cnoX"
                     /locus_tag="OQQ19_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308582.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperedoxin"
                     /protein_id="HCS1803584.1"
                     /translation="MSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPI
                     LESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAI
                     RALLDKVLPREEELKAQQAMQLMQEGNYTDALPLLKDAWQLSNQNGEIGLLLAETLIA
                     LNRSEDAEAVLKTIPLQDQDTRYQGLVAQIELLKQAADTPEIQQLQQQVAENPEDAAL
                     ATQLALQLHQVGRNEEALELLFGHLRKDLTAADGQTRKTFQEILAALGTGDALASKYR
                     RQLYALLY"
     gene            complement(14288..15097)
                     /gene="ybbO"
                     /locus_tag="OQQ19_001939"
     CDS             complement(14288..15097)
                     /gene="ybbO"
                     /locus_tag="OQQ19_001939"
                     /EC_number="1.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(+)-dependent aldehyde reductase"
                     /protein_id="HCS1803585.1"
                     /translation="MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLA
                     GCRKPDDVERMNNMGFTGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGP
                     LSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYA
                     ASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARF
                     TLGPEAVVDKVRHAFISEKPKMRYPVTLVTWAVMVLKRLLPGRVMDKILQG"
     gene            complement(15087..15710)
                     /gene="tesA"
                     /locus_tag="OQQ19_001940"
     CDS             complement(15087..15710)
                     /gene="tesA"
                     /locus_tag="OQQ19_001940"
                     /EC_number="3.1.1.5"
                     /EC_number="3.1.2.14"
                     /EC_number="3.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005225520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional acyl-CoA thioesterase I/protease
                     I/lysophospholipase L1"
                     /protein_id="HCS1803586.1"
                     /translation="MNFNNVFRWHLPFLFLVLLTFRAAAADTLLILGDSLSAGYRMSA
                     SAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLR
                     GFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVP
                     LLPFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAKQLQPLVNHDS"
     gene            15681..16367
                     /locus_tag="OQQ19_001941"
     CDS             15681..16367
                     /locus_tag="OQQ19_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1803587.1"
                     /translation="MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALVGE
                     SGSGKSTLLAILAGLDDGSSGEVSLVGQPLHNMDEEARAKLRAKHVGFVFQSFMLIPT
                     LNALENVELPALLRGESSAESRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA
                     FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIMVTHDLQLAARCDRCLR
                     LVNGQLQEEA"
     gene            16364..18775
                     /locus_tag="OQQ19_001942"
                     /pseudo
     CDS             16364..18775
                     /locus_tag="OQQ19_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415029.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            19204..22931
                     /locus_tag="OQQ19_001943"
                     /pseudo
     CDS             19204..22931
                     /locus_tag="OQQ19_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415030.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
BASE COUNT         5286 a         6007 c         6484 g         5154 t
ORIGIN      
        1 agctgctgat gctcgccata tagaaatatt tcgagaaaat gaggattaac agaatgctga
       61 ctgccagtac cactttgttg cgcggcagtg gattgattat cgtcgctttg ggttttcctt
      121 tattcattcg gtgctgtgcc gagtaccaac ggctaatttg cgccaacacc acgatcgcca
      181 gcagtgccgc aagcacaaac caggcaacgt tgcctttgcc ataaggcgcg ataatcaccg
      241 ccgtcagcaa gggtcccagg gaactgccaa agttgccgcc gacctgaaag atagattgcg
      301 ccaggccatg ccgcccgccg gaagccatac gggctacgcg agaagattcc ggatgaaaga
      361 ccgatgaact ggtaccgacc agcgccgccg ccagcagaac tgcgccaaca ctgcccgcca
      421 gcgcaagcag caccagacca cttaaggtaa agcacatgcc aattggcaac gaccacggca
      481 tcggatattt atcggtccag tagccgacca ctggttgcag tagcgaagag gcgagctgga
      541 aggtgagggt tatcatgcca atctgcataa atgtcagaga aaattctgac tgaagcagag
      601 gataaatcgc cagaatcagc gattggatca tgtcgttcag cagatgtgag aggctgatag
      661 cacctaaaat accaaacgat gttcgggcct tggtcgttga cgcagccgcg cccgccacag
      721 gctgggtttg ttcactcatt gccataggaa agtcactttt tcagggttgc gatgtaaaga
      781 atgatcttat ttgtgattat tacccgacta acatacctgt aagcgtcgcc tgaaggaagt
      841 ctcaacgccg aatacagaat ttctaatctg gatgcagatt tatcttcacc ggacgcagac
      901 ttgtctatta tgttgcgtca tactattttt caacacgttg aaatcaggtc agggagagaa
      961 gtatgaaatt attgcagcgg ggcgtggcgt tagcgctgtt aaccacattt acactggcga
     1021 gtgaaactgc tctggcgtat gagcaggata aaacctacaa aattacagtt ctgcatacca
     1081 atgatcatca tgggcatttt tggcgcaatg aatatggcga atatggtctg gcggcgcaaa
     1141 aaacgctggt ggatggtatc cgcaaagagg ttgcggctga aggcggtagc gtgctgctac
     1201 tttccggtgg cgacattaac actggcgtgc ccgagtctga cttacaggat gccgaacctg
     1261 attttcgcgg tatgaatctg gtgggctatg acgcgatggc gatcggtaat catgaatttg
     1321 ataatccgct caccgtatta cgccagcagg aaaagtgggc caagttcccg ttgctttccg
     1381 cgaatatcta ccagaaaagt accggcgagc gcctgtttaa accatgggcg ctgtttaagc
     1441 gtcaggatct gaaaattgcc gtcattgggc tgacaaccga tgacacagca aaaattggta
     1501 acccggaata cttcactgat gtcgaatttc gtaagcccgc cgatgaagcg aagctggtga
     1561 ttcaggagct gcaacagaca gaaaagccag acattattat cgcggcgacc catatggggc
     1621 attacgataa tggtgagcac ggctctaacg caccgggcga tgtggagatg gcacgcgcgc
     1681 tgcctgccgg atcgctggcg atgatcgtcg gtggtcactc gcaagctccg gtctgcatgg
     1741 cggcagaaaa caaaaaacag gtcgattacg tgccgggtac gccatgcaaa ccagatcaac
     1801 aaaacggcat ctggattgtg caggcgcatg agtggggcaa atacgtggga cgggctgatt
     1861 ttgagtttcg taatggcgaa atgaaaatgg ttaactacca gctgattccg gtgaacctga
     1921 agaagaaagt gacctgggaa gacgggaaaa gcgagcgcgt gctttacact cctgaaatcg
     1981 ctgaaaacca gcaaatgatc tcgctgttat cgccgttcca gaacaaaggc aaagcgcagt
     2041 tggaagtgaa aataggcgaa accaatggtc gtctggaagg cgatcgtgac aaagtgcgtt
     2101 ttgtacagac caatatgggg cggttgattc tggcagccca aatggatcgc actggtgccg
     2161 actttgcggt gatgagtgga ggaggaattc gtgattctat cgaagcaggc gatatcagct
     2221 ataaaaacgt actgaaagtg cagccattcg gcaatgtggt ggtgtatgcc gacatgaccg
     2281 gtaaagaggt gattgattac ctgaccgccg tcgcacaaat gaagccagat tcaggtgcct
     2341 acccgcaatt tgccaacgtt agctttgtga cgaaagacgg caaactcaac gacctgaaaa
     2401 tcaaaggcga accggtcgat ccggcgaaaa cttaccgtat ggcgacatta aacttcaatg
     2461 ccaccggcgg tgatggctat ccgcgccttg ataacaaacc gggctatgtg aataccggct
     2521 ttattgatgc cgaagtgctg aaagcgtata tccagaaaag ctcgccgctg gatgtgagtg
     2581 tttatgaacc gaaaggtgag gtgagctggc agtaatccga aagtgccgga tatttgcatc
     2641 cggcacaatg cttaatcgcg gcgggcgata tcagcaaatt tggcatcgag gatcttcgcc
     2701 agatcgcctg ccgccagttc gatatccagt ccgcgcttgc cgccagaaac ataaatagtg
     2761 gcaaattctt gtgcgggggc gtcgataatc gtcggcagac gttttttctg ccccagtggg
     2821 ctaatccccc caaccaggta tcccgtcgaa cgctgcgcgg ccatcggatc ggccatctca
     2881 actttcttgg cacccagcgc ttttgctact tttttaagat ccagttgacc tgcgaccggc
     2941 gtaacggcca ctgccagatg tttcatatca ccgttcactg ccaccagtag cgttttgtag
     3001 acttgatccg gattcaaacc taattttttg acgacttcat cgccaaaatt ggtttcagcc
     3061 ggatcgtgct cgtaggtatg gatttgaaac gaaatcttgt ttttttcgag taatttaact
     3121 gcgggtgtca tggtaatttt cctgccttaa acaaaaaaac gaagcaagca tacgcctgat
     3181 ggcggtccaa aaaaaagagt catcttgcct aagagtattg gcaggatggt gagattgagc
     3241 gacaatcgag ttacaccgtc gcttaaagtg acggcataat aataaaaaaa tgaaattcct
     3301 ctttgacggg ccaatagcga tattggccat ttttttagcg caacatttgc ggcaaattcc
     3361 cttctccata caggtgtagt gcaccgaccg cgaccacata tcgccccggc ggcatggcgc
     3421 gtaatttatc ccgccaggcg agatttcgct gatgcatcag cacatcgtac agcgactgac
     3481 tgaacgtatt gggcagcgtt atatcattat tttgcggagg tgcattcagc caccagctca
     3541 tcatttgttg cagcaaccgt gcgttggtat gccagtgggt cagcgtatcg tccagcagcg
     3601 ccagtccttt gtcagggagc tggagcaaca tggtaatctg gttttcagcc ccttccagtt
     3661 caatcacggg tttatgttgt tgcttcgccg cctgcaataa ctggtaatcg ataccgtatt
     3721 ctgcccgcag ccccagtttt tgtgcctgcg tcgcctgaag aaccatcgcg atttgccaca
     3781 gcggttgagt agaaaagagc gacggagaaa tgcccatctc ctggctaatg tgctgcagat
     3841 tttggagttg ctcctcgtta atgcgctctt ccagcgcctc gcaagtaggc aaattagcaa
     3901 aaggcgtatc gctggtggaa acatccgcct cgacgatcag cgcatcggcg tttttgagct
     3961 ttttgagcaa acgggtgggc aggggagtca tatcgtggct acccatatga atactgccaa
     4021 tcagatgaaa atggcgattg ccgggaaggg tgatatcgat ggcaggccag gtgtaatgat
     4081 taccgcgcag cgcggcccaa agcgttttta cccggtacaa cagatccata cgacctccct
     4141 ttgtgaaata tcatgctagc gcgcggtgag ggatggcgca aatggagttg gggacttgtt
     4201 taatgtgttt gtatgattca gtatgttctt gcatcgctat tcacagggaa gcaacagtta
     4261 aaaaccatga aacaggcaac aagaaaaccg acgacacccg gagatattct tctctatgaa
     4321 tatctggaac cgctcgattt gaaaatcaat gagttagcag agttgctgca tgttcatcgt
     4381 aatagcgtca gtacactgat caataataat cgtaaactca ccactgagat ggcattccgt
     4441 ctggcgaaag tttttgatac cacagtcgat ttttggctaa acctccaggc ggcagttgat
     4501 ctttgggaag ttgaaaacaa catgcgcacc caggaagaat tgggacggat tgaaacagtg
     4561 gctgaatatt tggcacgccg tgaagagcgt gcaaaaaagg tcgcgtaagg ccaaaacatc
     4621 gcttcatctc gtaggccgga taaggcgttc acgccgcatc cggcatccga gcaccattgc
     4681 ctgatgcgac gcttacccgt cttatcaggc ctacaaacct gtgcctgaac cgtaggccgg
     4741 ataaggcgtt tacgccgcat ccggcagtca tgcgtcgatg ccaaatgcgc cgccctaaag
     4801 cagcgcatcc gcaatgacgt acttattcct tcggtttaaa ccgcagcaac cggttggcgt
     4861 tactcactac ggtaatcgac gagagcgcca ttgccgctcc ggcaactacc gggttaagca
     4921 gtgttccagt aaacggccac aaaataccag cggcgaccgg aataccaatg ctgttgtaga
     4981 taaacgcacc gagcaggttc tgcttcatat tgcgcagcgt tgcgcgggaa atcgcgagcg
     5041 catctgcaac acccatcagg ctatggcgca tcagggtaat cgccgcggtt tcaatggcaa
     5101 catcactgcc gccacccatc gcaataccga catccgcctg agccagcgct ggcgcgtcgt
     5161 taatgccgtc gcccaccatt gccacctgac gtccttcact ttgcagacgt ttgatcgctt
     5221 cggctttacc gtctggcagc accccggcga ttacctcatc aatccctgct tctttggcga
     5281 tcgcattggc ggtggttggg ttatccccgg tcaacatcac cagacgatat cccgctttat
     5341 gcaggcgttg cagcgccgcc acgctatcac tacgcaacgg atcgcgtaca gccagcaggg
     5401 ctactacttt cccgtcaatc gccagcagca caggcgttgc tccttgcgat gcctgagctg
     5461 aaatatcggc ttcaatcgct ttagtatcga cttgctggtc atttaacagc gccggattac
     5521 ccagcaataa cgcatgacct tcagcttcac cgcttacgcc cagcccgcgc aatgtgcgga
     5581 aaccgttgac ctgcggcagc tgcatatcgc ctgctttatc gaggatcgct cgtgccagcg
     5641 gatggctgga accttgctcc agcgccgccg ccagacgcaa tgcttgcgct tcatcaacat
     5701 cagcaaatgt ttttactgcg acaacctgcg gcttcccttc ggtcagcgtc ccggttttat
     5761 cgaacacgac ggtatcgagt gtactggcgc gttgcagcgc gtcggcgtcc cgcaccagca
     5821 cgccaaactc agccgcccgc ccgacgccgg aaataatcga cattggcgtc gccagcccca
     5881 gcgcacacgg acaggcaata atcagcaccg tggtggctat caccagggta tagacaatct
     5941 gcggtgccgg accaaagaaa taccagattg ctgcactgat cagcgcaatc accactacta
     6001 ccggcacaaa tacggctgag attttatccg ccagctgacc gatttctggc ttgctgctct
     6061 gggcctggcg caccatgcga ataatccttg acagcgtggt atggctgcca accgcactgg
     6121 cgcgaaatag cacgctaccg tcctgtacca ctgtcccggc atggacgctt tcgccttcgc
     6181 ctttttgctg cgggattggt tcgcccgtca gcatcgcttc atccagccat gcttcgccct
     6241 gggtaatctc gccatctacc ggcacgcgat cgccggtcgt caggcgcagt aacatccctg
     6301 gctgaacttc cgccagcggc acgctttttt caccctctgc ggtgaccact cgcgccgtcg
     6361 gtggggttaa atcgagtaat ttctccagcg ccttagaaga acgctgacgc gcgcgcgctt
     6421 ccagcatatg gccgagatta atcagaccga taatcatcgc actggcttca tagtaaagat
     6481 gccgcgcttc catcgggaac cactgcggcc acaggttgac gctcatcgaa tagagccacg
     6541 ccacacccgt acccagcgcc accagcgtat ccatcgtcgc cgcaccgttc agcaggcttt
     6601 tccacgcgct gcggtaaaaa tgcccgccgg cgaaaaccat taccgccagg gttatcaggc
     6661 cgataactaa ccacaggctg cggttgtcag cggtgaccat catgttatcg ccgatcatcc
     6721 cccagaccat taccggaata cccaccgcca gtgcgacaat cgcctgccag cggaagcgct
     6781 tcatcgtagc gacggcggtt tcctgctggc gctcgcggcg tttcgcgtca tcttcaatcg
     6841 cttccgcgcc gtagcccgct ttttccaccg cctgcactaa atcttgtggg gaggcactgc
     6901 ccatcaccag cgcagtacgc tccgccaggt ttacccgtgc ctgagtgacg cccggtacgc
     6961 tttgcagcgc attttgtacg cgggtgacac agctggcgca gctcatgccg ctcagcagca
     7021 actgctggct gtcatcgtca tcggcggtcg ctgccggaag cgcctcagaa accgctgtca
     7081 gtgcttccga cgggattgat gactccgcca gcggtttagc ctttgggtgg cttacagatg
     7141 cgtcataacc cgcttgtttg atggtttcga tcagctgttc tgcactggca gtcccggtaa
     7201 cgtgcgcttc agtgatagac acatccgctt gttccacatc cgggcgctgt tcgagacttt
     7261 ctttcacgcg tttaacgcag tgaccgcagg acaggccgtc cagggtcagg tcgatagttt
     7321 gtgacataaa acactccttt aagacagttt tgactggctg tgataaaggt taaaccttcc
     7381 agcaagggga aggtcaagaa attaataaac caggcgggta aaagtccgta aagattaaaa
     7441 aatcggctcg atttgcatca ggattagaca tttatttctt tgttttcctg tagttaagtt
     7501 gctggtgcta agttaaatca ggatgcctga aaatcggcac cggggtgagg aattacctcc
     7561 cgcatctata aaaaggagtt aacaaaagat gttagatgca aacaaattac agcaggcagt
     7621 ggatcaggct tacacccaat ttcactcact taacggcgga caaaatgccg attacattcc
     7681 ctttctggcg aatgtaccag gtcaactggc ggtagtggct atcgtgacct gcgatggcaa
     7741 cgtctatagt gcgggtgaca gtgattaccg ctttgcactg gaatccatct cgaaagtctg
     7801 tacgttagcc cttgcgttag aagatgtcgg cccgcaggcg gtacaggaca aaattggcgc
     7861 tgacccgacc ggattgccct ttaactcagt tatcgcctta gagttgcatg gcggcaaacc
     7921 gctttcgcca ctggtaaatg ctggcgctat tgccaccacc agcctgatta acgctgaaaa
     7981 tattgaacaa cgctggcagc gaattttaca tatccaacag caactggctg gtgagcaggt
     8041 agcgctctct gacgaagtca accagtcgga acaaacaacc aacttccata accgggccat
     8101 agcctggctg ctgtactccg ccggatatct ctattgtgat gcaatggaag cctgtgacgt
     8161 gtacacccgt cagtgctcca cgctcatcaa tactgttgaa ctggcaacgc ttggcgcgac
     8221 gctggcggcg ggtggtctga atccgctgac gcataaacgc gttcttcagg ccgacaacgt
     8281 gccgtacatt ctggccgaaa tgatgatgga agggctgtat ggtcgctccg gtgactgggc
     8341 gtatcgcgtt ggtttaccgg gcaaaagcgg tgtaggtggc ggtattctgg cggtcgtccc
     8401 tggcgtgatg ggaattgccg cgttctcacc accgctggac gaagaaggta acagtgttcg
     8461 cggtcaaaaa atggtggcat cggtcgctaa gcaactcggc tataacgtgt ttaagggctg
     8521 atcatgatga acacggaagg taataacggt aacaaacccc tcggtctatg gaatgtcgtt
     8581 tccatcggta ttggggcaat ggtgggggcg gggatcttcg cgctgctggg gcaggctgcg
     8641 ttgctaatgg aagcctcgac ctgggtcgcc tttgcttttg gcggtattgt ggcgatgttt
     8701 tccggttatg cctatgcgcg tctgggggcg agctatccca gcaatggcgg cattatcgac
     8761 ttctttcgtc gcggattagg caacggcgtc ttttcgctgg cgctctcgtt actgtacctg
     8821 ttgacgctgg cggtgagcat cgccatggtc gcccatgctt ttggcgctta tgccgtgcag
     8881 tttttgcatg aaggcagcca ggaggagcac cttattttgc tctacgcgtt ggggagcatt
     8941 gcggtgatga cgcttttcaa ctccttaagc aaccatgcgg tagggcggct ggaagtgatc
     9001 ctcgtcggca ttaaaatgat gatcctgtta ttgctgatta ttgccggtgt ctggtcgctg
     9061 caaccagcgc atatttccgt ctctgcgccc cccagctccg gtgcgttctt ctcctgtatt
     9121 gggataactt tccttgccta tgcgggcttt ggcatgatgg cgaacgcggc ggataaagtg
     9181 aaagatccgc aggtcattat gccacgggcg tttctggtgg cgattggcgt taccacgttg
     9241 ctttatatct cgctggcact ggttttgctt agcgatgtat cggcattaga gttagaaaaa
     9301 tatgccgata ccgccgtagc gcaggctgct tctccgctgc tcggacatgt gggttatgtg
     9361 atcgtcgtca tcggcgcttt actggcgacg gcttcagcca ttaacgcgaa cctgttcgcc
     9421 gtgtttaaca tcatggacaa catgggcagc gaacgcgaac tgccgaagct aatgaataaa
     9481 tccctgtggc ggcagagtac ctggggcaac atcattgtcg tggtgttgat tatgctgatg
     9541 acggcggcac tgaatttagg ctcactcgcc agcgttgcca gcgccacctt tttgatttgc
     9601 tacctggcgg tgtttgtggt ggcgatccgc ctgcgtcatg atattcacgc ctcgttgccg
     9661 attcttatcg ttggtacgtt ggtgatgttg ttggtgatcg ttggctttat ctacagtctg
     9721 tggtcccagg gtagccgtgc gttgatatgg attattggct cactcttact cagccttatt
     9781 gtggcaatgg tcatgaagcg caataaaacc gtataacatc tctctgtgcg cagtacttcc
     9841 tgtattattg tggtggcggt cgatattcgc actggcaaaa aaacgtgctt gaatatctgt
     9901 tgaaaccctt taacaaagca caggaggcgt tgcgcgaacg atgaacatca gcgatgtagc
     9961 aaaaattacc ggcctgacta gcaaagccat tcgcttctat gaagagaagg ggctggtgac
    10021 gccgccgatg cgcagcgaaa acggttatcg cacctacacg cagcagcatc tcaacgaact
    10081 gaccttactg cgccaggcac ggcaggtggg ctttaacctg gaagagagcg gcgagctggt
    10141 gaatctgttt aacgacccgc agcggcacag cgccgacgtc aaacggcgca cgctggagaa
    10201 ggtggcggag atcgaacgac acattgagga gctgcaatcc atgcgcgacc agctgctggc
    10261 actggcgaat gcctgccctg gcgatgacag cgccgactgc ccgattatcg aaaatctctc
    10321 cggctgctgt catcatcggg cagggtgatt aagacgagac ggctcggata tgtagggtta
    10381 tcccttctat cgcaatgact tcaacatgcg tacctgcacc gagatcctcg ctggcgctga
    10441 caggccatga actgtcaccg acgcgcatat gaccgcgccc gttgaccagc ggagattcca
    10501 gcacaaaacg tcggccaatc agctgctgcc cgcgctggtt taaatgacta tcgctgtgct
    10561 tttgttcgcg cacccgccgc gacaaccatt tccaccacag ccaggcggcg agcagcgtca
    10621 ggatggcaaa cattacccct tgccactccc aacccagcgg caccagccag accaccaggc
    10681 cggtaatcac cgctgccacg ccgctccaca acaaataacc atttccgccc agcatctcgg
    10741 ctgccagcag caaaccgccg agactgagcc agaaaatatg tggatgaacg accattaact
    10801 ccatcatggc tgagtccgtt tgttggcgct gtctttcacc agttcggcaa tcccggcaat
    10861 cgaccccatc aggctgctgg cctctaatgg catcatcact actttgctgt tactggagga
    10921 accgatctgc tgtaacgctt cggtgtattt ctgcgctacg aagtagttca ccgcctgaat
    10981 atcaccggag gcgatagctt cagacaccat tttggtggcg cgggcttctg cttcggcgga
    11041 acgttcacgc gcttcagcct gtaaaaacgc cgactgacgt tcgccttccg ctttcaggat
    11101 ttgcgactgt ttttcacctt cggctttgag gatttccgcc tgacggatcc cttccgcttc
    11161 aagaatgtaa gcgcgtttgg tacgttccgc tttcatctgc gcgttcattg aagagataag
    11221 ctctgccggt gggcgcacgt cgcgaatttc aatacgggtg actttaatcc cccacgggtt
    11281 ggtggcttca tcgacaatac gcagcaggcg tgagttgatg ctgtcgcgct gagagagcat
    11341 ttcgtcaagt tccattgaac ccaacacggt acggatgtta gtcatggtca ggttgatgat
    11401 cgccagctcc agattgctga cttcataggc agcgcgtggc gcgtcaatca cctgaataaa
    11461 acagactgcg tcgatggtaa cgttggcgtt atctttcgag ataacttcct gggaagggat
    11521 atcgagcact tgctccatca tattgatctt gcgaccaatg cgatccataa acggcaccac
    11581 cagactgagc cccggctgta acgttttggt atagcgacca aaacgttcta ccgtccattg
    11641 atagccctgc ggcacgattt tgacgcccgc gccgacaatg accagcgcga caaaaatgag
    11701 aatcgggata aagataagca tcggaaaaac ctcctgttgt accgtccata atcagcaaaa
    11761 ttgctgcttg attaaacaaa ttatacctga ttactgaaag agagttcccc cttattcctg
    11821 cgaaggataa actgttttta gtaaaaatca gaaaaaggga acagcgatgc aggaaaatag
    11881 tcctttgctt cagctacaaa acgtaggata tctggcgggt gatgcgaaga ttcttaataa
    11941 catcaatttt tcgctgcgtg ctggcgaatt taagttaatt accggtcctt ctggttgtgg
    12001 caaaagtacg ctgctaaaaa tagttgcttc attgatcagc ccaaccagcg gaacgttact
    12061 gtttgaaggt gaggatgtca gcacactaaa gccagaaatc taccgccaac aagtctctta
    12121 ctgcgcccag acaccgacgc tgtttggcga tacggtatac gataatctga tctttccctg
    12181 gcagatccgt aaccggcagc ctgacccagc catttttctc gattttctcg aacgcttcgc
    12241 cttgccggac agcattttga cgaaaaatat cgccgagcta tctggtggtg aaaaacaacg
    12301 catctcactg attcgtaacc tgcaatttat gccgaaggtt ttattgctgg atgaaatcac
    12361 cagtgcgctg gatgaaagta ataaacataa cgttaatgag atgatccatc gttatgtgcg
    12421 cgagcaaaat attgccgtgc tgtgggtgac acacgataaa gacgaaatta atcatgcgga
    12481 taaagtgatt acactgcaac cgcatgccgg agaaatgcag gaagcacgct atgaactcgc
    12541 ataatattac taacgaatca ttggcactgg cattaatgct ggtggtggtg gcaatcttaa
    12601 ttagccataa agaaaaactg gcgctggaga aagatatttt ctggagcgtc gggcgcgcga
    12661 taattcagct gattattgtc ggctatgtgc tgaagtatat tttcagcgtg gatgatgcca
    12721 gcctgacatt attgatggtg ttatttatct gctttaatgc ggcgtggaac gcgcaaaaac
    12781 gcagtaaata tattgctaaa gcttttatct catcgtttat tgccattacg gttggggcgg
    12841 gaattaccct ggcggtgctg attctctcag ggtcgattga atttatcccg atgcaggtga
    12901 tccctatcgc cgggatgatt gccggtaacg ccatggtagc ggtggggttg tgttacaaca
    12961 atttagggca acgggtcatt agcgaacagc aacagattca ggagaaactg agtcttggcg
    13021 cgacgccgaa gcaggcttca gcgatattga ttcgcgacag tattcgcgcg gctttaattc
    13081 cgacggtcga ttcagcaaaa acggttggct tagtgagttt accaggaatg atgtccgggc
    13141 tgatatttgc cgggattgat ccggtgaagg cgattaaata tcagattatg gtgaccttta
    13201 tgctgctctc aaccgccagc ttgtcgacca ttattgcctg ctatttaacc tatcgtaagt
    13261 tttataattc gcgccaccag ttggtggtga cgcaattgaa gaagaaatga tgcgatgccg
    13321 gatgcgcagc atcgcatccg gcgttgtggt tcatgtgccg aacaacggaa tatcaataca
    13381 acaatgcata cagctggcgg cgatacttcg acgccagtgc atcacccgta cccagcgcag
    13441 cgaggatctc ctggaacgtt ttacgcgtct gaccgtctgc ggcggtgaga tctttacgca
    13501 gatgcccgaa cagcaactcc agcgcctctt cattgcgccc aacctgatgc agttgcagcg
    13561 ccagttgcgt cgccagtgcg gcatcttctg gattctccgc cacctgctgt tgcaactgtt
    13621 gaatttccgg cgtatcagcc gcctgcttca gcagttcgat ttgcgccacc agcccctggt
    13681 agcgggtgtc ctgatcctgc aacggaatgg ttttcagcac cgcttccgca tcttcagaac
    13741 ggttcagcgc aatcagcgtt tctgccagca gcaggccgat ctccccgttc tgattcgaca
    13801 actgccaggc gtctttcagc aatggcaggg catcggtgta attgccttcc tgcatcagtt
    13861 gcatcgcctg ctgcgctttc agctcttctt cgcgcggcag cactttatcc agcagggcgc
    13921 ggatcgcctc ttccggttgc ggcccctgga agccatctac cggttgcccg ttctggaaca
    13981 gatacacggt cggaatcgcg cgcagaccaa actgggcggc aatcatctgc tccgcgtcgc
    14041 agtccagctt cgccagaata aattgcccgt tgtactgcgc cgcgaggctt tccaggatcg
    14101 gggttaactg caaacagtgc tggctacgtt cagaccaaaa atagaacagc accggagtgg
    14161 tcatcgactg ttcaagaacc tgttgcaggt tagattcgtt aatgttgaca atattttcta
    14221 cggacatgga gtcgctctct gttgtcgata ttttctttga catgggggct taagcgcgcg
    14281 cttcaactca cccctgcaat attttgtcca tcacgcgccc aggcagcagg cgcttgagca
    14341 ccattactgc ccaggtcacc agcgttaccg gatagcgcat cttcggcttc tcgctaataa
    14401 aagcatggcg cactttgtcg accaccgctt ccggtcccaa cgtaaagcgg gcggcgatgc
    14461 cgggattttc gactggttta tcactttgcg tctggttgac gttgtcggtg aagcgagtac
    14521 gaatgggacc gggttcgatc aggctgactt taattccgct gtggcgtagc tccatgcgca
    14581 gcgcgtctga ccacgcctcc agcgcatatt tactggccgc gtaagcgcca cgacccggcg
    14641 tggagattaa tcccatcacc gatgatgtca tcacaatacg cccttcaccg tgcggtaaca
    14701 tcgcgggtaa caggcgcatg gtgagctggt gtgcgccgaa aaagttggcg gaaaactgct
    14761 gttccatctg cgcacggctg atggtggaaa gggggccata catgccgaat ccggcattgt
    14821 taaagatccc atacagacaa ttatcggtca gggcgatcac ctcgtctgct gcgcgatcaa
    14881 cactttctgg tgaatccaga tcgatcaaca cgccggtaaa tcccatgttg ttcatacgct
    14941 caacatcatc cggttttcgg caacctgcca gcacatgaaa accctggcgt tttaattcga
    15001 gcgcgctttc caggccaatt ccactggaac atccggtaat taagaccgat ttttgcataa
    15061 ctttacctgt caggatctcc gttgctttat gagtcatgat ttactaaagg ctgcaactgc
    15121 ttcgccatcc agtcggcaat aaacggctgg gcgtcgcggt tgggatgaat accgtcatcc
    15181 tgcatccatt gtggcttgag gtagacctct tccataaaaa agggcagcag cggaacatca
    15241 aactctttgg cgagtttggg gtaaatggcg ctaaaggctt cattataacg gcgaccatag
    15301 tttgcaggca gacgtatttg cattaacaat ggttcagcgt tggcggcttt gacatcctgc
    15361 aaaatctggc gcagcgtttg ctcggtttgc tgtggctgaa aaccacgcaa accgtcattg
    15421 ccgcccagtt caaccagcac ccagcgcggc tgatgctgtt tcagcagagc cggaaggcgc
    15481 gccagtcctt gttgcgaggt gtcgccgctg atgctggcat taactaccga cgttttactc
    15541 tgccacttat cattcaacaa ggcaggccag gccgcgctgg cagacattcg atacccggcg
    15601 ctcaggctat cacccagaat caataacgtg tccgctgcgg cggcacggaa ggttaacagg
    15661 accaggaaca ggaagggcaa atgccagcgg aaaacattgt tgaagttcat catcttaaga
    15721 agtccgtcgg tcagggggag catgaactct ccatcctcac cggagttgag ctggttgtca
    15781 aacgtggcga gaccatcgca ctggtgggcg agtcgggatc gggtaagtca accttgctgg
    15841 cgatcctcgc cgggcttgat gacggcagca gtggcgaagt gagtctggtg ggacaaccgc
    15901 tacataatat ggacgaagaa gcgcgggcaa agttgcgcgc gaagcacgtc ggctttgttt
    15961 ttcagtcatt tatgttaatt cctaccctta acgcgctgga aaacgtcgag cttccggctc
    16021 tgctgcgcgg tgagagtagc gcggaaagtc gtaacggggc gaaagcgttg ctcgaacagt
    16081 tagggctggg taaacgtctg gatcatcttc cggcacagct ttccggcggt gaacagcaac
    16141 gagtggcgct ggcacgagcc tttaatggtc gacctgatgt gctgtttgcc gacgaaccca
    16201 ccggcaacct tgaccgccag acgggcgata aaattgccga cctgctgttt tccctcaacc
    16261 gtgaacatgg caccacgttg attatggtga cccacgacct gcaactggcg gcacgctgcg
    16321 accgctgctt acggctggtg aacgggcagt tgcaggagga agcatgattg cacgttggtt
    16381 ctggcgcgaa tggcgttcgc cgtcgctatt aattgtctgg ctggcgctaa gcctggcggt
    16441 ggcctgcgtg ctggcgctgg gcaatatcag cgatcgcatg gagaagggct taagccagca
    16501 aagccgtgag tttatggcgg gcgatcgggc gttgcgcagt tcacgcgaag tgccgcaagc
    16561 gtggctggag gaagcgcaaa agcgcggcct gaaagtcggc aagcagctga ctttcgccac
    16621 aatgaccttt gcaggcgaca caccgcagct ggcgaacgtc aaagcggtgg atgatatcta
    16681 cccgatgtat ggcgatctgc aaactaatcc ccctggcctg aaaccgcagg cgggcagcgt
    16741 attgctggcc ccacgcctga tggcactgct taacctgaaa acgggcgaca ccattgacgt
    16801 gggcgatgcc accttgcgga ttgccggaga agtgattcag gaaccggatt ccggttttaa
    16861 ccccttccag atggctccgc gtctgatgat gaatctggcg gatgtcgata aaaccggagc
    16921 cgtgcagccg gggagtcggg tcacctggcg ttataaattc ggcggcaacg agaaccagct
    16981 cgacggctat gagaaatggt tgttacctca gcttaaaccc gaacaacgct ggtacggtct
    17041 ggaacaggac gaaggcgcgc tggggcgatc gatggaacgc tcgcaacagt tcctgctgct
    17101 ttcggcgctt ctgaccttgc tgctggcagt ggcagcggtg gcggtagcga tgaatcatta
    17161 ctgtcgcagt cgctacgatc tggtggcgat cctcaaaacg ctgggggcag ggcgagcgca
    17221 actgcgtaag ctaatcgtcg gtcagtggtt gatggtgctg acgctttcag ccgttaccgg
    17281 tggggccata ggcctgttgt tcgaaaacgt gttgatggtg ctgctcaagc ccgttctgcc
    17341 tgctgcacta ccgccagcca gcctctggcc gtggctgtgg gcgcttggca ccatgacggt
    17401 catctcgctg ctggtggggc tacgaccata ccgcttgttg ctggcaacgc agcctttacg
    17461 cgtattacgt aatgatgtgg tagcgaacgt ctggccgctg aagttttatc tgccgattgt
    17521 cagtatggtg gttgtgctgc tgctcgccgg attaatgggt ggcagcatgc tgctttgggc
    17581 ggtgctggcg ggcgcggtag tactggcttt gctgtgcggt gtgctgggct ggatgcagct
    17641 gaatgtactt tgccgcatga cgctgaaatc gctacctctg cgcctggcgg ttagccgcct
    17701 gttacgtcag ccgtggtcaa cgttaagcca gctttcggca ttttcgctct cctttatgct
    17761 gctggcgctg ttgctggtat tgcgttgcga tctgctcgac cgctggcagc agctaccgcc
    17821 agaaagcccg aactactttt taattaacat cgccacagaa caggtagcac cgctaaaagc
    17881 gttcctcgcg gaacatcata tagtcccgga atcattttat ccggtagtgc gggcgcggct
    17941 gacggcgatt aacgataagc cgacagaagg taatgaagat gaggcgctta atcgcgaact
    18001 caatcttacc tggcaaaata cgcggcccga tcataatccg attgtcgccg gtaactggcc
    18061 gccaaaagcc gatgaagtgt cgatggaaga ggggctggcg aaacgcttaa acgttgccct
    18121 cggtggtacc gtgactttta tgggcgatac ccaggagttc cgcgctaaag tgaccagcct
    18181 gcgcaaagtg gactgggaaa gtctgcggcc taatttctat tttattttcc cggaaggggc
    18241 attagacggg caaccgcaga gctggcttac cagtttccgc tgggagaatg gcaacggcat
    18301 gttgacgcaa ctcaaccgcc agttcccgac cattagcctg ttagatattg gcgcgatttt
    18361 aaaacaggtc ggttaggtgc tggagcaggt aagtcgggcg ctggaggtga tggtggtgct
    18421 ggtcaccgcc tgcggtatgt tgctgttgct ggcacaggtg caggtgggaa tgcgccagcg
    18481 tcatcaggag ctggtggtat ggcgcacact cggtgcgggg aaaaaactgc tgcgcacgac
    18541 attgtggtgt gagttcgcca tgcttgggtt tgtttccggc ctggtggccg caattggtgc
    18601 ggaaacggca ctggcagtgt tgcaggcgaa cgtgtttgat ttcccgtggg agccagactg
    18661 gcgattgtgg attgttctgc cgtgcagcgg tgcgctgctg ctgtcgcttt tcggcggctg
    18721 gctgggggcg cgactggtta agggtaaggc gctgttcagg cagtttgcgg ggtgatgaga
    18781 gtaaataagg ggcgttctgg ttgaatggaa cgccttgttt aaattaattc tacaatatgt
    18841 ttcattgatg atgttattga attggtgatt tcctatcttt ctattgctga tattaatctg
    18901 aattggtgga gtttaataat tttaaatata gccctacaaa aataactcag actaataaaa
    18961 tcataaatca tatgcgttga atggatatta tccatatagt gaatttgttg atgatgaatt
    19021 catctgtgct aaaaatttta gtttaataaa atattgaaag tgacctgtaa taacagttat
    19081 tgttgattga gaacaaataa gtttatgtga aaaatatata aatacattag ctggtcatgt
    19141 gtgtcatttt atttttttgt tgctaacaca gggatatgaa caataactaa aagggcactt
    19201 tatatgagcg gaaaaccagc ggcgcgtcag ggagatatga ctcagtatgg cggtcccatt
    19261 gtccagggtt cggcaggtgt aagaattggc gcgccaactg gcgtggcgtg ctcggtgtgt
    19321 ccgggcggga tgacctcggg caacccggtg aacccgctgc tcggtgcaaa agtacagccc
    19381 ggcgagacgg accttgcgct gcccgacccg ctgccgttca ttctctcccg cacctacagc
    19441 agctaccgga cgaagacgcc tgcgccagtg ggaacttttt ggccccggct ggaaagcgcc
    19501 ttctgatatc cgcttacaga tacgcgatga tgcactggta ctcaacgaca acggcgggcg
    19561 gagcattcac tttgagccgc tgctgccggg gaaggctgtg tacagccgca gtgagtcaat
    19621 gtggctggtg cgtggcggta aggcagcgca gccggacggc cacacgctgg cacgactgtg
    19681 ggcgtcgctg ccgccggata tccggttaag cccgcatctt tacctggcga ccaacagcgc
    19741 acaggggccg tggtggatac tggggtgatc tgagcgggtg ccgggtgctg aggacgtact
    19801 gccagcgccg ctgccgccgt accgggtgct taccgggatg gcggaccgct tcgggcggac
    19861 gctgacgtac cggcgtgagg ccgcaggcga cctggccggg gaaatcaccg gcgtgacgga
    19921 cggtgccggg cgggagttcc gtctggtgct gaccacacag gcgcagcagg cggaagaggc
    19981 ccggcagcag gcggtcgtcg ccggagcaaa acgaccggac attcctgatt cactgccgga
    20041 gagcacagag tacggccccg acaggggtat ccgcctttcg gcggtgtggc tgatgcacga
    20101 cccggcatac ccggagagcc tgcccggtgc gccactggcg cggtacacgt atacggaagc
    20161 cggtgaactg ctggcggtat atgaccgcag caatacgcag gtgcgcgctt tcacgtatga
    20221 cgcgcagcac ccgggccgga tggtggcgca ccgttacgcg ggaaggccgg agatgcgcta
    20281 ccgctacgac gatacggggc gggtggtgga gcaactgaac ccggcagggt taagctaccg
    20341 ctatctttat gagcaggacc gcatcaccgt caccgacagc ctgaaccggc gtgaggtgct
    20401 gcatacagaa ggcggggccg ggctgaaacg ggtggtgaaa aaagaactgg cggacggcag
    20461 cgtcacgcgc agcgggtatg acgcggcagg aaggctcacg gcgcagacgg acgcggcggg
    20521 acggcggaca gagtacggtc tgaatgtggt gtccggcgat atcacggaca tcaccacacc
    20581 ggacgggcgg gagacgaaat tttactataa cgacgggaac cagctgacgg cggtggtgta
    20641 cccggacggg ctggagagca gccgggaata tgatgaaccg ggcaggctgg tatcggagac
    20701 atcgcgcagc ggggagacag tacgctaccg ctacgatgac gcgcacagtg agttaccggc
    20761 gacgacaacg gatgcgacgg gcagcacccg gcagatgacg gcggttcacc gcgaggaagg
    20821 tatcagcctt taccgccact atgacaaccg tggccggtta acctcggtga aagacgcaca
    20881 gggccgtgaa acgcagtatg agtacaacgc cgcaggcgac ctgactgccg ttatcacccc
    20941 ggacggcaac cggagcgaga cacagtacga tgcgtgggga aaggcggtca gcaccacgca
    21001 gggcgggctg acgcgcagta tggagtacga tgctgccgga cgtgtcatca gtctgactaa
    21061 cgagaacggc agtcacagcg acttcagcta cgatgcgctg gaccggctgg tacagcaggg
    21121 cggctttgac gggcggacgc aacgttatca ttatgacctg accggaaaac tcacgcagag
    21181 tgaggatgag gggcttgtca ccctctggca ctacgatgcg tcggaccgca tcacgcaccg
    21241 gacggtgaac ggcgacccgg cagagcagtg gcagtatgac ggccacggct ggctgagaga
    21301 aatcagccac ctgagcgaag gccaccgtgt cgctgtccac tacggctacg acgataaggg
    21361 ccgcctgacg ggcgaacggc agacggtgga gaacccggag acgggggaac tgctgtggca
    21421 gcatgagacg aaacacgcct acaacgaaca ggggctggca aaccgcgtca cgccggacag
    21481 cctgccgccg gtggagtggc tgacctacgg cagcggttac ctggcgggca tgaagctggg
    21541 cgggacgccg ctggtcgagt atacgcggga caggctgcac cgtgagacgg tgcgcagctt
    21601 cggcagcatg gcaggcagta atgccgcata tgaactgacc agcacataca cccccgcagg
    21661 ccagttacag agccagcacc tgaacagcct ggtgtatgac cgtgactacg ggtggaatga
    21721 caacggcgac ctggtgcgca tcagcggtcc gcgacagacg cgggaatacg gctacagcgc
    21781 cacgggcagg ctggagagcg tgcgcaccct cgcaccggac ctggacatcc gcatcccgta
    21841 tgcgaccgac ccggcgggaa accggctgcc ggacccggag ctacacccgg acagcacgct
    21901 cacggcgtgg ccggataacc gcatcgcaga ggatgcgcac tatgtttacc actatgatga
    21961 atacggcaga ctgacggaga agacggaccg catcccggcg ggtgtgatac ggacggacga
    22021 cgagcggacc caccactacc actacgacag ccagcaccgc ctggtgttcc acacgcggat
    22081 acagcatggc gagccactgg tcgagagccg ctacctctac gacccgctga gccgccggac
    22141 ggggaaacgg gtgtggcgtc gcgagcgtga cctgacgggg tggatgtcgc tgtcgcgtaa
    22201 accggaggtg acgtggtacg gatgggacgg cgaccggctg acgacggtac agaccgacac
    22261 cacgcgtatc cagacggtat accagccggg gagcttcgcg ccgctcatcc gcatcgaaac
    22321 agacaacggt gaacgggaga aagcgcagtg ccgcagcctg gcggagaagt tacagcagga
    22381 agggagcgaa gacggtcacg gtgtggtgtt cccggctgaa ctggtggggc tgctggacag
    22441 gctggagggg gaaatccggg caaactgcgt gagcagtgaa agccgccagt ggcttgcgca
    22501 gtgcgggctg acggtggagc ggctggcggc acagatagag ccggtttatt tgcctgagcg
    22561 aaaaatacat ctttatcact gtgaccaccg gggcctgccg ctggcgctta tcagtgaaga
    22621 cggcaatacg gcgtggagcg cggaatatga tgaatggggc aaccagctta atgaggagaa
    22681 cccgcatcac ctgcaccagc cgtaccggct gccggggcag cagtatgata aggagtcggg
    22741 gctgtactac aaccggaacc ggtactacga tccgttgcag gggcggtata tcactcagga
    22801 cccgataggg ctggaggggg gatggagtct gtatgcgtat ccgctgaatc cggtgaatgg
    22861 tattgatcca ttagggttaa gtcccgcaga tgtagcgcta ataagaagaa aagatcaact
    22921 aaaccatcaa a
//
LOCUS       DAJVSY010000056        22866 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.056, whole genome shotgun sequence.
ACCESSION   DAJVSY010000056 DAJVSY010000000
VERSION     DAJVSY010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22866
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.056"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            40..969
                     /gene="aaeR"
                     /locus_tag="OQQ19_001944"
     CDS             40..969
                     /gene="aaeR"
                     /locus_tag="OQQ19_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator AaeR"
                     /protein_id="HCS1803588.1"
                     /translation="MERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDEL
                     QVKLLNRSTRSIGLTEAGRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTM
                     AQNVLAGLTAKMLKEYPGLSVNLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGA
                     MPMVVCAAKSYLTQYGIPEKPADLSSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRF
                     VTNDPMTLVRWLTAGAGIAYVPLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDK
                     LPLKVQVVINSLTDYFVEVGKLFQEMHGRGKEK"
     gene            complement(1097..2542)
                     /gene="tldD"
                     /locus_tag="OQQ19_001945"
     CDS             complement(1097..2542)
                     /gene="tldD"
                     /locus_tag="OQQ19_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HCS1803589.1"
                     /translation="MSLNLVSEQLLAANGLKHQDLFAILGQLAERRLDYGDLYFQSSY
                     HESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRD
                     SGDGKVQTLGAVGHSPLYTSVDPLQSMSREEKLDILRRVDKVAREADKRVQEVTASLS
                     GVYELILVAATDGTLAADVRPLVRLSVSVLVEEDGKRERGASGGGGRFGYEFFLADLD
                     GEVRADAWAKEAVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRR
                     GTSVFSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQ
                     DKLNARLMGMTPTGNGRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFG
                     GGQVDITSGKFVFSTSEAYLIENGKVTKPVRGATLIGSGIETMQQISMVGNDLKLDNG
                     VGVCGKEGQSLPVGVGQPTLKVDNLTVGGTA"
     gene            complement(2698..6498)
                     /gene="yhdP"
                     /locus_tag="OQQ19_001946"
     CDS             complement(2698..6498)
                     /gene="yhdP"
                     /locus_tag="OQQ19_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709041.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA2 domain-containing protein YhdP"
                     /protein_id="HCS1803590.1"
                     /translation="MRRLPGILLLTGAALVVIAALLVSGLRIALPHLDAWRPEILNKI
                     ESATGMPVEASQLSASWQNFGPTLEAHDIRAELKDGGEFSVKRVTLALDVWQSLLHMR
                     WQFRDLTFWQLRFRTNTPITSGGGNDSLEASHISDLFLRQFDHFDLRDSEVSFLTPSG
                     QRAELAIPQLTWLNDPRRHRAEGLVSLSSLTGQHGVMQVRMDLRDDEGLLSNGRVWLQ
                     ADDIDLKPWLGKWMQDNIALETAQFSLEGWMTIDKGDVTGGDVWLKQGGASWLGEKQT
                     HTLSVDNLTAHITRENPGWQFSIPDTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRS
                     DELRIRASNLELAGLEGIRPLAAKLSPALGDVWRSTQPSGKINTLALDIPLQAADKTR
                     FQASWSDLAWKQWKLLPGAEHFSGTLSGSVENGLLTASMKQAKMPYETVFRAPLEIAD
                     GQATISWLNNDKGFHLDGRNIDVKAKAVHARGGFRYLQPANDEPWLGILAGISTDDGS
                     QAWRYFPENLMGKDLVDYLSGAIQGGEADNATLVYGGNPQLFPYKHNEGQFEVLVPLR
                     NAKFAFQPDWPALTNLDIELDFINDGLWMKTDDVNLGGVRASNLTAVIPDYSKEKLLI
                     DADIKGPGKAVGPYFDETPLKDSLGATLQELQLDGDVNARLHLDIPLNGELVTAKGEV
                     TLRNNSLFIKLLDSTLKNLSGKFSFINGDLQSEPLTASWFNQPLNVDFSTKEGAKAYQ
                     VAVNLNGNWQPAKTGVLPAAVNEALSGSVAWDGKVGIDLPYHAGATYNVELNGDLNNV
                     SSHLPSPLAKPAGEPLPVNVKVDGNLSSFELTGQAGADNHFNSRWLLGQKLTLDRAIW
                     AADSKTLPPLPEQSGVELNMPPMNGAEWLALFQKGAAESVGGAASFPQHITLRTPMLS
                     LGNQQWNNLSIVSQPTANGTLVEAQGREINATLAMRNNAPWLANIKYLYYNPSVAKTR
                     GDSTPSSPFPTTERINFRGWPDAQIRCTECWFWGQKFGRIDSDLTISGDTLTLTNGLI
                     DTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDAAAEFFGVTTPIRQSSFNVDYDLH
                     WRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRLLSVDALMRKLRFDFRDTF
                     GEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADIAMKGSVNLVRRDLNMEAVVAPEIS
                     ATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYHISGPLDDPQINEVLRQPRK
                     EKAQ"
     gene            complement(6566..8035)
                     /gene="rng"
                     /locus_tag="OQQ19_001947"
     CDS             complement(6566..8035)
                     /gene="rng"
                     /locus_tag="OQQ19_001947"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HCS1803591.1"
                     /translation="MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKG
                     RVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQD
                     LMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE
                     YCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQR
                     VLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEI
                     QRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQ
                     LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKR
                     TRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE
                     ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM"
     gene            complement(8025..8618)
                     /gene="yhdE"
                     /locus_tag="OQQ19_001948"
     CDS             complement(8025..8618)
                     /gene="yhdE"
                     /locus_tag="OQQ19_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphatase YhdE"
                     /protein_id="HCS1803592.1"
                     /translation="MTSLYLASGSPRRQELLAQLGVTFERIVTGIEEQRQPQESAQQY
                     VVRLAHKKAQAGVAQTAQDLPVLGADTIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQ
                     VMTAVVLADSQHILDCLVVTDVTFRTLTDEDIAGYVASGEPLDKAGAYGIQGLGGCFV
                     RKINGSYHAVVGLPLVETYELLSNFNALREKRDKHDG"
     gene            complement(8627..9115)
                     /gene="mreD"
                     /locus_tag="OQQ19_001949"
     CDS             complement(8627..9115)
                     /gene="mreD"
                     /locus_tag="OQQ19_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001487551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HCS1803593.1"
                     /translation="MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILL
                     YWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQ
                     QALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFA
                     VQ"
     gene            complement(9115..10200)
                     /gene="mreC"
                     /locus_tag="OQQ19_001950"
     CDS             complement(9115..10200)
                     /gene="mreC"
                     /locus_tag="OQQ19_001950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HCS1803594.1"
                     /translation="MKPIFSRGPSLQIRLILAVLVALGIIIADSRLGTFSQIRTYMDT
                     AVSPFYFVSNAPRELLDGVSQTLASRDQLELENRALRQELLLKNSELLMLGQYKQENA
                     RLRELLGSPLRQDEQKMVTQVISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQ
                     VVAVAKLTSRVLLICDATHALPIQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGD
                     VLVTSGLGGRFPEGYPVAVVSSVKLDTQRAYTVIQARPTAGLQRLRYLLLLWGADRNG
                     ANPMTPEEVHRVANERLMQMMPQVLPSPDAMGPKLPEPTTGIAQPTPQQPTTGNAATA
                     PAANRSPQRATPPQSGAQPPARAPGGQ"
     gene            complement(10266..11309)
                     /gene="mreB"
                     /locus_tag="OQQ19_001951"
     CDS             complement(10266..11309)
                     /gene="mreB"
                     /locus_tag="OQQ19_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000913396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreB"
                     /protein_id="HCS1803595.1"
                     /translation="MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQD
                     RAGSPKSVAAVGHDAKQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNN
                     FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATG
                     SMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERI
                     KHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALE
                     QCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALE
                     MIDMHGGDLFSEE"
     gene            complement(11614..13554)
                     /gene="csrD"
                     /locus_tag="OQQ19_001952"
     CDS             complement(11614..13554)
                     /gene="csrD"
                     /locus_tag="OQQ19_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase E specificity factor CsrD"
                     /protein_id="HCS1803596.1"
                     /translation="MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQA
                     VATAIDTHLVSNDFSTLRPQITELMMSADIVRVDLLHGDKQVYTLARNGSYRPVGSSD
                     LFRELSVPLIKYPGMSLRLVYQDPMGNYFHSLMTTAPLTGAISFIIVMLFLAVRWLQR
                     QLAGQELLETRATRILNGERGSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDT
                     LIRSYAAQDVKTGLNNRLFFDNQLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHS
                     QVEEQFFTLTNLLSTFMMRYPGALLARYHRSDFAALLPHRTLKEAESIAGQLIKAVDT
                     LPNNKMLDRDDMIHIGICAWRSGQDTEQVMEHAESATRNAGLQGGNSWAIYDDSLPEK
                     GRGNVRWRTLIEQMLSRGGPRLYQKPAVTREGQVHHRELMCRIFDGNEEVSSAEYMPM
                     VLQFGLSEEYDRLQISRLIPLLRYWPEENLAIQVTVESLIRPRFQRWLRDTLMQCEKS
                     QRKRIIIELAEADVGQHISRLQPVIRLVNALGVRVAVNQAGLTLVSTSWIKELNVELL
                     KLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQVYATGVRSRSEWQTLIQRGVTGGQG
                     DFFASSQPLDTNVKKYSQRYSV"
     gene            13706..14680
                     /locus_tag="OQQ19_001953"
     CDS             13706..14680
                     /locus_tag="OQQ19_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCS1803597.1"
                     /translation="MQALLLEQQDGKTLASVQTLDESRLPEGDVMVDVHWSSLNYKDA
                     LAITGKGKIIRNFPMIPGIDFAGTVRTSEDPRFHAGQEVLLTGWGVGENHWGGLAEQA
                     RVKGDWLVAMPQGLDARKAIIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVG
                     STAVALLHKLGYQVVAVSGRESTHEYLKSLGASRILPRDEFAESRPLEKQVWAGAIDT
                     VGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPERRA
                     QAWQRLVADLPESFYTQAAKEISLSEAPNFAEAIINNQIQGRTLVKVN"
     gene            15658..16128
                     /gene="accB"
                     /locus_tag="OQQ19_001954"
                     /gene_synonym="fabE"
     CDS             15658..16128
                     /gene="accB"
                     /locus_tag="OQQ19_001954"
                     /gene_synonym="fabE"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HCS1803598.1"
                     /translation="MDIRKIKKLIELVEESGISELEISEGEESVRISRAAPAASFPVM
                     QQAYAAPMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSPMVGTFYRTPSPDAKAF
                     IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE"
     gene            16139..17488
                     /gene="accC"
                     /locus_tag="OQQ19_001955"
     CDS             16139..17488
                     /gene="accC"
                     /locus_tag="OQQ19_001955"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009483995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HCS1803599.1"
                     /translation="MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLL
                     ADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIF
                     IGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKA
                     SGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADG
                     QGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFE
                     FLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHA
                     VECRINAEDPNTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYG
                     ENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGLQEK"
     gene            complement(17580..18627)
                     /locus_tag="OQQ19_001956"
                     /pseudo
     CDS             complement(17580..18627)
                     /locus_tag="OQQ19_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000787050.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
     gene            complement(18624..19587)
                     /locus_tag="OQQ19_001957"
                     /pseudo
     CDS             complement(18624..19587)
                     /locus_tag="OQQ19_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000048618.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
     gene            complement(19609..20598)
                     /locus_tag="OQQ19_001958"
                     /pseudo
     CDS             complement(19609..20598)
                     /locus_tag="OQQ19_001958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001525780.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(20599..22098)
                     /locus_tag="OQQ19_001959"
     CDS             complement(20599..22098)
                     /locus_tag="OQQ19_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020245594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HCS1803600.1"
                     /translation="MTDVILDVSHIAKTFGHVQALKDITLSLRKGRVHTLLGENGAGK
                     STLMKILAGVYPPTQGTITLRGETITINNPQHSRQLGIAIIFQELSLSNNMTVAENIY
                     ANNEPRRFGIINDKKMLADCQNLLAERGIPLDPLEMVGNMSMAHRQLVEIAKALSYAA
                     DVVIMDEPTSSLSDNEAEILFNIIEKLKQRGCAVIYISHRMDEIMRISDDISVIRDGE
                     YIATHEKKNSDIQHLIAQMVGREMKNIWPARLGEIPDENVPAKLEVKNLSHPSLFKEI
                     SFAVRPGEVLGFFGLVGAGRSDVMKALFGLVSYQGTVLIDGKEVRITNPKQAIDHGIA
                     FVTENRKEEGLVLMHDVNMNTHHVAFQYNASRMGLINHRQEEAKTLQSIARMNTKVSS
                     VHQAVGALSGGNQQKIVLSKWLEKTPRILLLDEPTRGVDVGAKFEIYNVIRQLAAAGT
                     AIILVSSELPEVMALSDRLVVMRNKTIADIYSCENLTQTQVMTAATGVR"
     gene            complement(22159..>22866)
                     /locus_tag="OQQ19_001960"
     CDS             complement(22159..>22866)
                     /locus_tag="OQQ19_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HCS1803601.1"
                     /translation="LFANQDLNKQLSDVEDFITKKVDAIIISPVDSKGVQAAIIKADK
                     AGIPVITVDVAAEGVPVVSHVATDNYAGGVEAGKLMGKLLNGKGTVASISYPALQSVV
                     ARVDGFKKGLSDTPDIKIVAEQPSITRAEALTTAQNIMQANANLNGLFGFGDDAALAA
                     VIAAKSAHNDNIKIIGFDGMKEARDAVDSEKTFAAVIRQYPDQMGAKAIDAAVDHLNG
                     KPVEKMIPVQPGVYTGK"
BASE COUNT         5668 a         6193 c         5459 g         5546 t
ORIGIN      
        1 tattatgtga tctaaatcac ttttaagtca gagtgaataa tggaacgact aaaacgcatg
       61 tcggtgtttg ccaaagtagt tgaatttggc tcttttaccg ccgccgccag acagctacag
      121 atgagcgttt cgtccatcag tcagacggtg tcaaaactgg aagatgagtt gcaggtaaag
      181 ctgttaaacc gtagcacacg cagcattggc ctgaccgaag ccggtagaat ttactaccag
      241 ggctgccgtc gtatgcttca tgaagtgcag gatgttcatg agcaactgta tgccttcaat
      301 aacaccccca tcgggacgct acgcattggc tgttcttcaa ctatggcaca aaatgttctc
      361 gccgggctga cagccaaaat gctgaaagaa tacccaggtt tgagcgtcaa tctggttacc
      421 ggaattccag cccccgacct gattgccgac ggtctggatg tggtgatccg cgtcggcgcg
      481 ttgcaggatt ccagcctgtt ttcccgccgt cttggcgcga tgccaatggt ggtgtgcgcc
      541 gcgaaaagct atctcacaca atacggcata ccggaaaaac ccgccgattt aagtagccat
      601 tcatggcttg aatacagcgt gcggcccgac aatgaatttg aactgattgc accggaaggg
      661 atctcgactc gcctgatccc gcaagggaga tttgtgacta atgatccgat gacgctggtg
      721 cgctggctaa cggcgggtgc cgggatcgcc tacgtgccgc tgatgtgggt gatcaacgag
      781 atcaatcgtg gggagctgga gatcctgctg ccgcgttatc agtcagatcc acgcccggtt
      841 tatgcgttat ataccgaaaa agataagctg ccgctgaagg tacaggtcgt gatcaactcg
      901 ctgacggatt attttgttga ggtcggtaaa ttgtttcagg agatgcacgg gcgcgggaaa
      961 gagaagtaat tcatattgta ctgttacgtt ctacaaacct gtgccaacgg gttcccctca
     1021 ccctaacccc agaggagcga ggggaccgtt cgtgcacgta gaaagattaa ttatccttct
     1081 gaaaataatg aaattattac gcagtaccgc caacagtcag gttatcaact ttcagcgttg
     1141 gctggcccac gccaaccggc aaactttgcc cttctttacc gcagacaccc acgccgttat
     1201 ccagtttcag gtcgttgcca accatcgaaa tctgctgcat ggtttcgata ccggaaccaa
     1261 tcaacgttgc gcctctcacc ggcttcgtta ctttaccgtt ttcaatcaga tatgcttctg
     1321 aagtggagaa aacgaatttg ccggaggtga tatccacctg accgccacca aagttcggtg
     1381 catagatacc gtactcaacg gattcaataa tttcctgcgg ggtcgattta cccggcagca
     1441 tataggtgtt ggtcatacgc ggcatgggca gatgggcgta ggattcacgg cgaccgttgc
     1501 cagtcggcgt catccccatc aaacgcgcgt tgagtttatc ctgcatgtag cctttcagaa
     1561 tgccgttctc aatcagcacg ttgtactggc ctggcgtacc ttcgtcatca atcgccaccg
     1621 aaccacggcg atcgaccatc gtgccgtcat caaccacggt acacagttct gaagccacca
     1681 gctccccgac ctgcccacta aatactgaag tgccgcggcg gttgaagtcg ccttccagac
     1741 cgtgacctac cgcttcatgc aacagcacgc ccggccaacc tgcgccaagt actaccggca
     1801 tggtgcccgc tggtgcagca acggcagaaa gattgaccag cgccatacgc actgcttctt
     1861 ttgcccatgc atccgcacgg acttcgccgt caagatcggc aaggaagaac tcataaccaa
     1921 aacgaccgcc accgccactg gcaccgcgtt cgcgtttgcc atcttcttcg accagaacgc
     1981 tcacggaaag acgcaccagc ggacggacat ccgccgctag cgtgccgtcg gtggccgcaa
     2041 ccagaattaa ttcatagaca ccactgaggc tggcagtcac ttcctgtacg cgcttgtccg
     2101 cttcgcgagc aaccttatcg acgcgacgca ggatatccag cttctcttca cggctcatgc
     2161 tttgcagcgg atctaccgag gtatacaacg ggctatgccc taccgcgccc agcgtctgta
     2221 ctttgccatc accactatca cggacgatgg tgcgcgccgc ttgcgcactc tgttccagcg
     2281 ccagcaggct gatttggtca gcgtaagcaa atccggtttt ttcaccgctg attgcacgca
     2341 cgccaacgcc ctgatcgatg ttgtaagaac catctttaat aatgcggtct tctaaaaccc
     2401 aggattcgtg atagctcgac tgaaaataga gatcgccata atcaaggcga cgttcggcca
     2461 gttgaccgag gatcgcgaac aagtcctgat gtttcaggcc gttcgccgct agcaattgtt
     2521 cacttactag gttaagactc atcgtttttg ctactcgtta gttactgcag tagaggattt
     2581 tttacggctg ccggatgcgg cgtgaacgcc ctatccgacc tacggttatg ttctggctcg
     2641 ttggcctttg gcaacgatta tcatatgaga ttggggcaat tacgcgccct cgtcaaatca
     2701 ttgcgctttt tctttacgcg gttggcgcaa cacttcgttg atttgcggat cgtccagcgg
     2761 acccgaaatg tgatagcgca aaatggagac tttgctccac agcggcccca gcactttact
     2821 ggctgcaaat actgccgcgc caacaatggg gttaaccgca aaagccgcag ccacgcccac
     2881 cgtcgcagaa atctctggtg cgacaaccgc ttccatattc aggtcgcgac gtaccagatt
     2941 taccgaccct ttcatggcga tatccgcctc caggccatcc accagcgtgt cgtcggtgtg
     3001 cataacgccg tctttaatcc acgcggtgct gcgaatggag tcaaaataga acccttcgcc
     3061 aaaagtgtct ctgaaatcaa aacgcagctt acgcatcagg gcatcaacgc tcaataagcg
     3121 cagcaattgc ccggcatgtc cggtattgat ttcggtaatt tcgcctttac ccagttgagt
     3181 atgaatgatg ccattcaacg tcgcctcatc tggttgccag ggtgctttgc gccagtgtaa
     3241 atcgtaatcc acattaaatg acgactggcg tatgggcgtc gtgacaccaa aaaattctgc
     3301 ggcggcatca attttctgcc cgcgcagttt tcctttcagc gaggtacgtt cattccccgg
     3361 attattaacc cattcaccat cggcagtaag ccgcgagaaa ccagtatcaa tcagtccatt
     3421 ggtcagcgtt aacgtatcgc cagaaatggt gagatcactg tcaatacgac cgaatttttg
     3481 cccccagaac cagcactctg tgcatcgtat ttgtgcgtcc ggccagccac ggaagttaat
     3541 gcgctccgtt gtcgggaaag gtgatgacgg tgttgaatca ccacgagttt tcgccacgct
     3601 cgggttgtaa taaagatatt tgatattcgc cagccacggc gcgttattac gcatcgccag
     3661 cgtggcattg atttcacgcc cctgtgcctc aaccagggtg ccatttgccg tcggttgcga
     3721 aacaatactc aggttattcc attgctgatt tcccagtgac aacataggcg tacgtaacgt
     3781 tatgtgttgt gggaaactcg ctgcaccacc gacactctcc gcagcgcctt tctggaacag
     3841 ggccagccac tcggcaccat tcatcggcgg catattgagt tcaacgccac tttgttccgg
     3901 caacggcggg agcgttttac tgtctgccgc ccaaatagca cgatcgagcg tcagcttttg
     3961 accaagcaac cagcggctat tgaaatggtt atccgcacca gcctgtccgg ttaattcaaa
     4021 gctgctgaga ttgccatcaa ccttaacgtt taccggcagt ggttcacccg caggtttggc
     4081 taacggtgaa ggtaagtgac tgctcacatt attcagatcg ccgttcagct ctacgttata
     4141 ggtcgcgcca gcatgataag gcagatcaat gcccacttta ccatcccacg ccacgctgcc
     4201 actcaatgct tcgttcaccg ctgcaggcag aacgccggtt ttcgccggtt gccagttacc
     4261 gttgaggttt accgcaacct ggtaggcttt tgccccttct ttggtggaaa aatccacgtt
     4321 caacggctga ttaaaccagc ttgctgtcag tggttcactt tgcagatcgc cattgataaa
     4381 gctgaattta ccgctcaaat ttttcagggt gctgtcgagt agtttgataa acagactgtt
     4441 attacgcagc gtcacttcac ctttcgcggt taccagttcg ccgttcagcg ggatatcaag
     4501 atgtaagcga gcattcacat cgccgtcgag ctggagttct tgcagggtcg cacccagaga
     4561 atctttcagc ggtgtctcat caaagtaagg gccaacggct ttacccggac ctttaatgtc
     4621 agcgtcaatc agcagttttt ctttcgagta gtcagggatc actgcggtga gattactcgc
     4681 gcgcacgccg cccagattaa cgtcatcggt tttcatccat aaaccgtcgt taataaagtc
     4741 cagttcaata tcaaggttag ttaatgcagg ccagtccggc tggaaggcaa acttcgcgtt
     4801 acgcagcggc accagcactt caaactgacc ttcgttgtgt ttatagggga agagttgcgg
     4861 attgccacca taaaccagcg tcgcgttatc cgcttcaccg ccctgaatcg cgccacttaa
     4921 gtaatcaact aggtctttac ccatcaagtt ttccgggaaa tagcgccagg cttgtgaacc
     4981 atcatcggta ctgatgccag ccagaatacc cagccagggt tcatcgttag caggttgcag
     5041 gtaacgaaaa ccgccgcgcg catggacagc tttggcttta acgtcaatat tacgcccatc
     5101 caggtggaaa cctttgtcat tgttcagcca gcttatagtt gcctggccgt cggcgatttc
     5161 cagtggcgca cggaataccg tttcgtaagg catctttgcc tgcttcatcg acgcggtaag
     5221 caaaccattt tcaacgctgc cggaaagcgt cccggagaag tgttccgcac ccggtaataa
     5281 tttccattgc ttccaggcca gatcgctcca cgatgcctga aaacgggtct tgtctgccgc
     5341 ctgaagcggg atatccagcg ccagagtgtt aatcttgccg ctcggttgtg tggagcgcca
     5401 aacatcaccc agtgcaggtg aaagtttcgc ggccagcggg cgtatgccct ccaggcctgc
     5461 cagctccaga ttactggcgc gaatccggag ttcgtcactg cgtttattgt ctttgccgcc
     5521 aacgtcctgt tccggtatcc aggccagcgt caatgctccg ctcggccagg gtttgccgtc
     5581 catcgtgatc cgtgtatcgg gaatagagaa ctgccagccc ggattttcac gcgtaatatg
     5641 cgcggtcaga ttatccaccg acagcgtatg cgtttgcttc tcgcccaacc agctggcacc
     5701 gccctgtttc agccagacgt caccgccggt tacatcgcct ttgtcgatcg tcatccagcc
     5761 ttcaagggag aactgtgccg tttccagagc aatattgtcc tgcatccatt taccgagcca
     5821 cggcttcagg tcgatgtcat ccgcctgtag ccagacgcga ccattgctta acaacccctc
     5881 atcatcgcgc aaatccatgc gcacctgcat cacgccgtgc tgtccggtaa ggctggagag
     5941 gcttaccagg ccttccgcac ggtgtcgacg tggatcgttc agccaggtga gttgtgggat
     6001 cgccagctcg gcgcgctgac cggatggcgt cagaaaactg acttcactgt cgcggagatc
     6061 gaaatggtca aattgacgaa gaaacagatc gctgatgtga ctggcttcca ggctatcatt
     6121 accaccaccg ctggtgatag gagtgttggt gcgaaagcgc agctgccaga aagtgaggtc
     6181 gcgaaactgc cagcgcatat gtaacaagct ctgccagaca tccagcgcca gagtaacgcg
     6241 tttaaccgaa aattcgccgc catcttttag ttctgcacgg atgtcgtgtg cttcaagcgt
     6301 cgggccaaaa ttctgccagc tggctgagag ctgactggct tctaccggca tgccagtcgc
     6361 ggattctatt ttgttgagga tttccggacg ccaggcgtca agatgcggta aagcaatacg
     6421 caggccgcta accagcaggg ctgcgatcac aacgagcgcg gctccagtaa gcagtaaaat
     6481 ccccggcaat cgcctcaccc gtcactcctt gtctgctaaa aatgtgactc aaaaaccctt
     6541 tgccggatgg cggcccagca tctgtttaca tcattacgac gtcaaactgc tcctggttat
     6601 agagcggttc aatttgtact ttaacctgtt tgccaacgaa aatttccact tccgccagcg
     6661 agtgtgactc ttcgcctttc aaggcttcag ctactgccgg agaagcatag accaggaaac
     6721 ggtcggagtc gtaagcatgg tggacacgaa caatctcgcg catgatttca tagcataccg
     6781 tttccacggt tttcaccgtt ccgcgaccgt ggcaggttgg gcattcgtta cacagtacgt
     6841 gctcaatgct ttcgcgggtg cgtttacgcg tcatctccac cagccccagc gccgaaaaac
     6901 cattaacgct ggttttcacc cggtctttgc tcaacgcctg ctccagcgag tgcagcacgc
     6961 ggcggcggtg atcttcatta ttcatatcga tgaaatcaat aatgataatc ccacccagat
     7021 tacgcaaccg taactggcga gcgatagcct gcgtcgcttc aatattggta ttgaaaatgg
     7081 tgtcgtccag attgcgatga ccgacaaacg ctccggtatt gatgtccacg gtggtcatcg
     7141 cttcggtctg gtcgataatc agataaccac cggatttcag ttctactttg cgttccagcg
     7201 ctcgctggat ttcgttttcg acatcaaaga gatcgaaaat cggctggcgt ccggtgtaat
     7261 gctccagctt gctggtcatc tcgggaatgt actccgaggt aaactccagc aatgcttcgt
     7321 aagtcaggcg tgagtcaacg cgaatgcggt ccagttcggc gtcggcgaaa tcacgcagaa
     7381 cacgctgcgc cagcgccagt tcgccgtaca gctgataacg ggtctgcggg cgttttttac
     7441 gctccataac tttggtccag acgcgtttca gataagcggc atcggaggcc agttcagcct
     7501 cgccaacccc ttccgctgcg gtacggatga taaacccgcc ctgctcgtcg caatactctg
     7561 cgaccacttt tttcaggcgt tcacgttctg attcgctttc aatacgttgg gaaaccccaa
     7621 cgtgagaagc ccctggcata aacaccagat agcgagaagg cagcgtgata tcggtggtca
     7681 ggcgcgcacc tttagtgcca agcggatctt tcaccacctg caccatcaga tcttgcccct
     7741 gacgaaccag ttccgagatg tcgcgcaccg tgaattgctt ttgttcttca cccgccacac
     7801 attcggtgtg cggcatgata tcggatgcat gaagaaacgc ggctttatcc agcccaatat
     7861 ctacaaaagc cgcctgcata cccggaagta cacgacttac acgacccttg tagatattgc
     7921 ctactattcc gcgtcgcgcc tcacgttcaa tatgaatttc ctgcagaata ccgccatcaa
     7981 tatacgccac tcgcgtttcc gaaggcgtta cgtttactaa caattcagcc gtcatgttta
     8041 tcccttttct cacgcagtgc gttaaaatta cttaataatt catacgtttc aaccagcggt
     8101 aagccgacta cggcgtgata gctgccattt atcttcctga caaaacagcc acccagcccc
     8161 tgaataccgt atgcacctgc tttatctaac ggttcaccgc tggcgacata gcccgcgatg
     8221 tcttcgtctg ttaacgttct gaaagtcaca tcggtgacca ccaggcaatc gagaatgtgc
     8281 tggctgtcgg ccaacaccac tgccgtcatc acctgatggg tctgacccga taatttgcgc
     8341 aacatctgcg ccgcatgctc tgcgtcgcgc ggtttctcca gcacttctcc attcaggata
     8401 acgatagtat ccgcacccag caccgggaga tcctgcgccg tttgcgcgac acccgcctgt
     8461 gctttcttgt gtgccagacg cacaacatac tgctgcgcgc tctcctgcgg ctgacgctgc
     8521 tcctcaatgc ccgtaacaat acgttcaaag gtcacgccaa gttgcgcaag taactcctga
     8581 cgacgcggag aaccggaagc taaatacaga gaagtcatag aaacctttat tgcactgcaa
     8641 actgctgacg gactttacgc atcagcaaga aaatccacgg ccagagcacc ccattgacta
     8701 cactactcca gaacacttcc ggtctgaaag agacgttaat cactaaaaac tctgcccaga
     8761 aaacaataat atccaccacc agcgaaagca acatgacgac tagcgcctgc tgccataatg
     8821 cgaggttgcg gaaaagctgg tatttcagcg ccaccaggta agcaatgatg ctcatcgcca
     8881 atacgcgtac gccaagcgtc gagccgctga tcagatccag tatggcaccc atcacaaaac
     8941 ctgtgcccac atttacgcga tggggcaagg ccaggatcca atacaacaag ataagtaaca
     9001 cccagtttgg ccggaaaaca atcaggttat ccggccaggg catgatttgc agcaacagcg
     9061 caatgaggaa agagagccag attacccaac gtccctggct acgatagctc gccactattg
     9121 ccctcccggc gcacgcgcag gcggttgagc accactttgc ggcggcgtag ccctttgtgg
     9181 agagcgatta gcagcaggcg cagtagctgc atttcctgtc gtcggttgct gcggagtcgg
     9241 ctgagcgatc cccgttgtcg gttcaggtaa ctttggcccc atcgcgtctg gcgaaggcaa
     9301 tacctgcggc atcatctgca tcagacgttc attagcaaca cgatgcacct cttccggcgt
     9361 catcgggtta gcgccgttac gatccgcgcc ccacagcagc agcagataac gcaaacgttg
     9421 cagtcctgca gtcggacgcg cctgaatcac agtataagcg cgctgggtat cgagttttac
     9481 ggaagagaca accgcgaccg gatagccttc cgggaaacga ccgcccagac cggaggtcac
     9541 cagcacatca ccaacacgaa tatccgtatt cgctggcaga tgctcaagct gcaaatcatc
     9601 tgtacaaccg ttaccggctg caattacgcg gatatcgttg cgcagcacct ggattggcag
     9661 cgcgtgggtc gcatcacaaa tcagcagcac gcgactggtc agtttagcga cggccaccac
     9721 ctgaccaaca acacctttgt cgctgatgac cggctggcct tcataaacgc cattaacgct
     9781 acctttatcg ataacaactt gatcgctata aggatcgtta accgtggaga taacctgagt
     9841 caccattttc tgctcatcct gacgcagcgg ggaacccagc agctcgcgca gacgcgcgtt
     9901 ctcctgtttg tattgtccaa gcatcagcag ttcactgttt ttcagcaaca gttcctgacg
     9961 taacgcccgg ttttcaagtt ctagttggtc acgcgaggcc agcgtctgcg atacgccatc
    10021 cagcaattca cgaggagcat tggaaacaaa gtagaaagga ctgacggcgg tatccatata
    10081 agtacggatt tgactgaacg tccccaggcg gctgtcggca ataataatgc cgagcgccac
    10141 cagcaccgcc agaataaggc gaatctgtag cgacgggcca cggctaaaaa ttggcttcat
    10201 aagttatgcg tattctcgta tcagaccagg cagggtaaac agacatttcc cctgcctgca
    10261 tccgattact cttcgctgaa caggtcgccg ccgtgcatgt cgatcatttc cagcgctttg
    10321 ccgccaccgc gcgccacaca ggtcagcggg tcttcagcaa caacgactgg aatgccggtt
    10381 tcttccatta acaaacggtc aaggttacgc agcagtgcgc caccaccggt gagcaccatg
    10441 ccgcgctcgg agatgtcgga agccagttcc ggcgggcact gttccagtgc aaccattacc
    10501 gcgctcacaa taccggtcag cggttcctgc agtgcttcga ggatttcgtt ggagttcagg
    10561 gtaaaaccgc gtggaacacc ttctgccagg ttacggccac gaacttcgat ttcacggact
    10621 tcatcgcccg ggtaagccga accgatttcg tgcttgatac gttctgcggt ggcttcaccg
    10681 atcagagaac cgtaattacg acgcacatag ttgatgatag cttcgtcgaa acgatcacca
    10741 ccaatgcgca cggaagagga gtaaaccacg ccgttcaagg agataacagc aacttcagtg
    10801 gtaccaccac cgatatcaac caccatagaa ccggtcgctt cagaaaccgg caggccagca
    10861 ccaattgcgg cagccatcgg ttcttcaatc aggaagactt cacgggcacc agcgccctgc
    10921 gcggattcac gaattgcgcg gcgttcaacc tgggtcgcgc caaccggtac acaaaccaga
    10981 acgcgcgggc ttggacgcat aaagttgttg ctgtgcactt gtttgatgaa gtgctggagc
    11041 attttttcag tcacgaagaa gtcggcgata acgccgtctt tcattgggcg aatggcagca
    11101 atattgcccg gcgtacggcc cagcatctgc ttcgcgtcat gacctactgc agctacgctt
    11161 ttcggtgaac cggcacgatc ctgacgaatg gccaccacgg aaggctcatt caatacgatg
    11221 ccttgtcctt ttacataaat gagggtattc gcagtaccca ggtcaatgga caagtcattg
    11281 gaaaacatgc cacgaaattt tttcaacata ctaagggata atcctgaaag ctggggcgga
    11341 aaagaaaatc cgcttacttt accaaccaca cgcagcagcg acaaggcgca aaaatcatct
    11401 gctacggtga aaattagtgc agttcgtttc ctttgttaca aatctctgcc tgagtccaga
    11461 aaggcttaat gcatcagcag cattcctcgc ctgtttgcaa ccgcgtaagg tcattcatct
    11521 gcatatgtgc tgcaacaatc tggcgagcag acaagcacac tcccatgaga cgcagcgcgc
    11581 gttattctac gtgaaaacgg attaaacggc aggttaaacc gagtatcttt gtgaatattt
    11641 tttcacgtta gtatcaagtg gctgtgagga cgcgaaaaaa tccccttgcc cgcctgtaac
    11701 accgcgctga atcagggtct gccactcgct tcgcgaacgc acaccggtgg cgtaaacctg
    11761 ggtgctggtc ccggagcagg cttccaccag gctttgaacc agcagctggt tctccgttcg
    11821 cttctcaatg tttctgacca gccccggatg gagcttgagt aactcaacat taagttcttt
    11881 gatccaactg gtgcttacca gcgtcaaacc agcctggttg acggctaccc gtacccctaa
    11941 agcattcact aaacgaataa caggttgtaa acgactgata tgttgaccta catcggcctc
    12001 tgcaagttca ataattatgc gttttcgttg tgatttttca cattgcatta acgtatcgcg
    12061 cagccaacgc tgaaaacgcg ggcgaatcag cgactcaacg gtaacctgaa tcgccagatt
    12121 ttcctctggc cagtaacgca atagtggaat aagacggctg atttgcagac ggtcatactc
    12181 ttccgataag ccaaactgca agaccatcgg catatactcc gccgagctaa cctcttcatt
    12241 accatcgaag atgcggcaca tgagttcgcg atgatgaacc tgaccttcgc gagtaaccgc
    12301 cggtttttga taaaggcgcg ggccgccgcg actgagcatt tgctcgataa gcgtacgcca
    12361 gcgaacatta ccgcgtcctt tttcaggcaa cgagtcatcg taaatagccc agctattgcc
    12421 gccctgcaat cccgcattac gcgtggcaga ctctgcatgt tccattacct gctcggtatc
    12481 ctgaccacta cgccaggcgc agataccaat gtggatcata tcgtcgcgat cgagcatttt
    12541 attgttcggc aaggtatcga cggctttgat taactgaccg gcgatgctct ctgcctcttt
    12601 taacgtccgg tgcggtaaca gcgcagcaaa atcactgcgg tggtaacgcg ccagcagtgc
    12661 gccagggtag cgcatcataa atgtcgacag cagattcgtc agagtgaaga actgttcttc
    12721 aacctggctg tgcccccaag tatcgctcaa catattgaaa tccggcagac gaatcatcat
    12781 cacgatcccg tgggtaccta ctttctcctg atcttccagt aacgttgcta actgattatc
    12841 gaaaaagagt cggttattga ggccggtttt cacgtcctgg gcggcataag agcggatcag
    12901 cgtatcaaga cggctgtgtt gttcgcgtgc gttctgaatt tcacgaagca gcgtatccag
    12961 cgcactgctg gttctgggcg gccattcata gatggttccc aacacattag agccacgctc
    13021 accgtttaag atacgagtag cccgggtttc cagcaattct tgcccggcaa gttgccgttg
    13081 taaccagcgt accgccaaga agagcataac aatgataaag ctaatcgccc ccgtgagcgg
    13141 cgcggtggtc atcaacgaat ggaaatagtt gcccatcgga tcctgataaa ccagacgcag
    13201 cgacatcccc ggatacttta ttaacggaac gctcagttca cgaaacagat cgctggagcc
    13261 aaccggacga taactaccat ttctggccag ggtataaacc tgtttatcac catggagcag
    13321 gtctacacga acgatatctg ccgacatcat taattcggta atttgtggcc ttaatgtgct
    13381 gaagtcattc gacacaaggt gggtatcaat cgccgtcgcc accgcctgaa cgcgatgact
    13441 aaacttatac tgaattgcgt tgtagaaact tagcgaacag cccagcaaag tcacaaaaat
    13501 tgttaacccg gtgagcagcg taacaaaggc cgaaaatttc gtcgttaatc tcatccttgt
    13561 gttaactccg atagtgagga agcgggcata ctagcaaatc agatttatct cgcaatttat
    13621 tgcgcttcat cggctttgct tttccattag cgagtataat cttcagaaat tattttccaa
    13681 tccatcatgc acatgaggac cacttatgca ggcgttactt ttagaacagc aggacggcaa
    13741 aactctcgca tcagtacaga ctctggacga aagtcgcctg ccggagggcg atgtcatggt
    13801 cgatgttcac tggtcgagcc tgaactataa agatgcgctg gcgattaccg gtaagggaaa
    13861 aatcatccgt aattttccga tgattcctgg gatcgatttt gccggaactg tacgcaccag
    13921 cgaagatccg cgttttcatg ccggtcagga ggtgttactc actggctggg gcgttggtga
    13981 aaaccactgg ggtgggctgg cggagcaggc gcgagtgaaa ggtgactggc tggttgccat
    14041 gccgcaaggg ctggacgcgc gtaaagcaat aattatcggt actgccggtt ttaccgccat
    14101 gctgtgtgtg atggcgctgg aagatgccgg tgttcgcccg caggacgggg agattgtcgt
    14161 gacgggtgcc agtggtggcg tcggcagtac cgccgtggcg ctgctgcata agttgggtta
    14221 tcaggtcgtt gccgtttccg gtcgcgaaag tacccatgaa tatctgaaaa gtttaggtgc
    14281 cagccgtatt ctccctcgtg atgagtttgc cgaatcccgt cctctggaaa aacaagtctg
    14341 ggctggggca attgacactg ttggcgacaa agtgctggca aaagtgctgg cgcaaatgaa
    14401 ttacggcggc tgcgtggcgg cctgtggtct ggcgggtggt tttactctgc caaccacggt
    14461 catgccattt attctgcgta atgtccgttt gcaaggggtg gattcagtaa tgacgccacc
    14521 agaacgccgc gcacaagcct ggcagcgact ggtcgccgat ttaccggaat cattctatac
    14581 ccaggcggca aaagagatat ctctgtcaga ggcaccgaac tttgccgagg ccatcattaa
    14641 taaccagatc cagggtcgca cgctggtgaa ggttaactaa ccatttagca aggaataata
    14701 agagagggaa ctcattttga catcattatt caatcggtta acgggaaaag cggttagccg
    14761 gacagctttc gtcgaacacc ttggtcagga agttgtacaa catcatccaa actggaaagt
    14821 catgatttcg actgaccaca aattgatgcg cattgatact cctctaaaca gccattattg
    14881 atacgcctcc gtcgcctgtt aggtttatgg tgctttgcct gggcgacact acgcttaacc
    14941 tgttactgat ttctggtacc atggggtgaa taatctgatt ttatttgact acaaattaac
    15001 cactcgaacc tatttaatgc tgagaattgt cagtcggttg attttgcgtg ctttagcatt
    15061 cacatctatc cagacgatgc agtgaaaatt gggtaatccc cagcaaccgc tgcgtaatgt
    15121 cgtctatctt gtcgcgatcc tggcatccct acattatttg tggtctgtga agattatctc
    15181 attgcagccc ctcatcttcg cagggctggc tttacagctt ttcaccttac gttataagaa
    15241 gttccgtcga tgatggcgct aatttcgtga attgtgcggc ttgttgcaaa ttacacggtg
    15301 ttgaaggtta tttacatgtt agctgttgat tatcttccct gataagacca gtatttagct
    15361 gccaattgct acgaaatcgt tataatgtgc gacctcgtcc tccctgacgc agtttttgcg
    15421 ctgcggaaaa ggtgacattg gcgcaacgaa ggtatatttt gttttttgcc ggaggatagc
    15481 agcagatcgc tgcacaatgt ccgtcaagtc taacattgat actctggggc aaaatagacc
    15541 ggcgtcccgg cctgctggaa tttatcgcta tgcatacagc tgtcggggca tacgctttac
    15601 agacggcggt gaaacgcctg tcacaatcac actaaacaaa gagtacggaa cccactcatg
    15661 gatattcgta agattaaaaa actgatcgag ctggttgaag aatcaggcat ctccgaactg
    15721 gaaatttctg aaggcgaaga gtcagtacgc attagccgtg cagctcctgc cgcaagtttc
    15781 cctgtgatgc aacaagctta cgctgcacca atgatgcagc agccagctca atctaacgca
    15841 gccgctccgg cgaccgttcc ttccatggaa gcgccagcag cagcggaaat cagtggtcac
    15901 atcgtacgct ccccgatggt tggtactttc taccgcaccc caagcccgga cgcaaaagcg
    15961 ttcatcgaag tgggtcagaa agtcaacgtg ggcgataccc tgtgcatcgt tgaagccatg
    16021 aaaatgatga accagatcga agcggacaaa tccggtaccg tgaaagcaat tctggtcgaa
    16081 agtggacaac cggtagaatt tgacgagccg ctggtcgtca tcgagtaacg aggcgaacat
    16141 gctggataaa attgttattg ccaaccgcgg cgagattgca ttgcgtattc ttcgtgcctg
    16201 taaagaactg ggcatcaaga ctgtcgctgt gcactccagc gcggatcgcg atctaaaaca
    16261 cgtattactg gcagatgaaa cggtctgtat tggccctgct ccgtcagtaa aaagttatct
    16321 gaacatcccg gcaatcatca gcgccgctga aatcaccggc gcagtagcaa tccatccggg
    16381 ttacggcttc ctctccgaga acgccaactt tgccgagcag gttgaacgct ccggctttat
    16441 cttcattggc ccgaaagcag aaaccattcg cctgatgggc gacaaagtat ccgcaatcgc
    16501 ggcgatgaaa aaagcgggcg tcccttgcgt accgggttct gacggcccgc tgggcgacga
    16561 tatggataaa aaccgtgcca ttgctaaacg cattggttat ccggtgatta tcaaagcctc
    16621 cggcggcggt ggtggtcgcg gtatgcgcgt agtgcgcggc gacgctgaac tggcacaatc
    16681 catctccatg acccgtgcgg aagcgaaagc tgctttcagc aacgatatgg tttacatgga
    16741 gaaatacctg gaaaatcctc gccacgtcga gattcaggta ctggctgacg gtcagggcaa
    16801 cgctatctat ctggcggaac gtgactgctc catgcagcgc cgccaccaga aagtggtcga
    16861 agaagcacca gcaccgggca ttaccccgga actacgtcgc tacatcggcg aacgttgcgc
    16921 taaagcgtgt gttgatatcg gctatcgcgg tgcaggtact ttcgagttcc tgttcgaaaa
    16981 cggcgagttc tatttcatcg aaatgaacac ccgtattcag gtagaacacc cggttacaga
    17041 aatgatcacc ggcgttgacc tgatcaaaga acagctgcgt atcgctgccg gtcaaccgct
    17101 gtcgatcaag caagaagaag ttcacgttcg cggccatgcg gtggaatgtc gtatcaacgc
    17161 cgaagatccg aacaccttcc tgccaagccc aggcaaaatc acccgtttcc acgcacctgg
    17221 cggttttgga gtgcgttggg agtctcatat ctacgcgggc tacaccgtac cgccgtacta
    17281 tgactcaatg atcggtaagc tgatttgcta cggtgaaaac cgtgacgtgg cgattgctcg
    17341 catgaagaat gcgctgcagg agctgatcat cgacggtatc aaaaccaacg ttgatctgca
    17401 gatccgcatc atgaatgacg agaacttcca gcatggtggc actaacatcc actatctgga
    17461 gaaaaaactc ggtcttcagg aaaaataatt tgtgacgcgc ggtgttttca tcgcgcttag
    17521 caaagaacgt aatcaacgcc gggcctgtta acgctgcccg gcgtttttat tgccgttagc
    17581 taacggtagc ctgcaatttc cgctttcaac gcgctcattt cagcatcgcc atcaacaatt
    17641 cccagctcaa agcagtattt ctttgtttcc cctggctcaa taaagggcag acgcccctgc
    17701 gctcgttctt tatcacgacc gtcaggaaaa ctattactga cctccagtcc cataacatac
    17761 tcacccgcgc ctaaattttt ccactggata aagttgggta gctgcatggt gtcgaatttc
    17821 tcgtaaattc cccaccccag ttcggcgttc accagagcaa ctttactcat cccctgactg
    17881 tcgctattca acgtgagata gtaaacctgc tcgtcaaaac cgggctgtgg ggtacaaatc
    17941 tccagatgac tggttaaccc ttccgccgca tgcggagttc gtggcgttac gcttttagcc
    18001 gacagcaaga tttctggcct gtggcgataa taaaggccag ccgtaattaa agtgataaag
    18061 aatttgcagc ggctggcggg tgaaaccatg attagtcacc ttgtcttcaa tgcgcagcac
    18121 attttcgcca taacggcagc gaatggtcct ttccagcgtc agattttcgc cgaacagtcg
    18181 cgtttcccgt actttgccat tgatgacaaa ttcaatgccg tcgtcggtcc gttctgtgcg
    18241 ataccccacc tcttctgctg gagtcgcagc caaacgcccg tgtaacccca gcgtttctcc
    18301 ttcatcctca caaggcgtgc caatgtagct aagtccgcag gtagtcagta accccgcgta
    18361 aaagctacgt aaaaatccgt tgccctgaga ctcaaaaaaa gcgggggcga caatgccgtt
    18421 gggggtgata aaagaaagcg ccgtgtcctt gtagctggcc catgcaatat ccagcgcgcg
    18481 atcttttacc accgtaaatg ccagtcccgc accagtacgg acatcaaacg cttctgtacc
    18541 ctttgctctg ccactacgta actcatagtg tttaattccg gcaacctgcg agagatcgcc
    18601 aatccacgac caaatttcgt ttttcattgt gctgcttccc gaatggacat gtcatggcgc
    18661 tggatgaacg cttcgatttc cgcaaggcga gacgttccct ccattgggcc acgtctggtt
    18721 accgccagcg caccgcaggc attggcatat tgcagcgctc gatggacgtc aaaccctagc
    18781 tggcggcagg caatccacgc gccaccaaag cagtctcccg caccggtcgg gtcaacttct
    18841 tccaccggat agctctcaac atgaaactgc tcattcgcgg agtagtaact ggcaccttga
    18901 ttgccgcgct tcacaatcac ctctttaaca ccttcttcaa gaaaacctgc gattgcacgc
    18961 tccggcgtcg aatgtggcga caagagcaac acttcgccct cgctgggcat atagatatcc
    19021 gttaactcaa gaacaaagtg gagggcgtca cgcatttctg gaatatcgag catctcttta
    19081 cgaatattag ggtcgaaaga aataacacca ccatttgctt taacgatagt taccgctttt
    19141 tttactgcgt cataccatat gaaacgaaaa cagggaagag cccataatat gaaaatgggt
    19201 acagtccttc agaatatttt catcaacatg ctgcgccgat aatttaccgc aagcggcatt
    19261 cttaatatta aaaataaaat cgcgatcgcc agagttatga taagtaacaa aggcactccc
    19321 ggtagcttcc tgaggtaaga ctgaaatccc cctgatatcc acaccgtcag cagccagacg
    19381 atgtatatta atatcaccaa agccatcatt ccccacacag ctaatgatgc cgcacggaac
    19441 gccaagacgt gtcacctggt cgataaaaat agcgggcgca ccactgggat aagggccgtt
    19501 ccagatacct ggttgatcaa atggctggcc gattttactc gccataattt caaccagaat
    19561 ttctccaatt gtgaagacct tactcatatg attaattcct tgaaatgatt agctgcgttt
    19621 tcttttattt cttacgtcaa aataaacggc tacaagaatg actaatcctt taaccaccat
    19681 ctggtaaaaa tagggaacat tcattaagtt catgccatta ttaataacgc cgatagttaa
    19741 tgcgccgatc accgtcccca ccacggttcc atagccgccg ttcaggctgg tgcctcccag
    19801 tacagccgca gcaatagcat ccagttcgta gctcaacgcg gaattcggtt acccggaata
    19861 gaggcgtgag gcgaggatca tcccgctgat acctgccagc acggctgtaa tcataaagac
    19921 tttaattttc aagcgggtga catttatccc tgaataaatt gccgcttctt tattaccacc
    19981 agtgatataa atttttcgtc caaaggttgt tttagtaaga atgaagtggt taatcagcaa
    20041 taagatgatt aatatccaga ttggaatagg tatatagaga aattctccat tccccagtgc
    20101 cagaaaggca tcatctttaa tcatgatggg cataccatcg gtcactatat aagcgatacc
    20161 acggaagatc cccatagtag caacggtgac aataaacgac gggatccccg ctatagccgt
    20221 caagccacca tttatcatcc ccagagccag tgctgcaata atggataatg ggaccaataa
    20281 aataaatgga attccccatg aagccccaag cgcagcaaat gtgccaatca atgcaatggt
    20341 tgaaccgacc gataaatcaa tatcgccaag caaaagtaca taagtcattc cataggcggt
    20401 aattgcaatt atcgaaacct gaagaataat attagtaatg ttgttggcgg taaaaaaact
    20461 gtcattaata aaactgaaca gaatgattaa caccaccatt ccactgagga taccgccata
    20521 ttgcctgaag acttttttta aattatttgc aatgggaatt tccgaaggtt tcggactggc
    20581 aagagttttc tctgtcattt aacgtactcc tgttgcagcg gtcattacct gtgtctgcgt
    20641 taaattttca catgaataaa tatcggcaat cgttttatta cgcattacca ccagacgatc
    20701 gctaagtgcc atgacttctg gcagttcaga ggacaccaga ataattgctg tccctgccgc
    20761 agccagttga cgtatcacgt tatagatttc aaattttgcg ccgacatcca ctccgcgcgt
    20821 tggctcatcg agcaataaaa tacgcggagt tttctccagc cacttcgata acacgatttt
    20881 ctgttgatta ccgccgctca gcgctcccac tgcctgatgt acagaactca ctttagtgtt
    20941 cattctggca attgattgca gcgtcttcgc ctcttcttgt cggtgattga tgagtcccat
    21001 ccgcgaagcg ttatattgaa acgccacatg gtgcgtgttc atattgacgt cgtgcatcag
    21061 cactaaccct tcttccttgc ggttttcggt cacaaaagca atgccatgat caatagcctg
    21121 tttaggatta gtgatcctga cttccttacc atcaatcaac acagtcccct gatacgaaac
    21181 gaggccaaag agcgccttca tcacatcgga acgcccggcc cccaccaggc caaaaaatcc
    21241 gaggacctcc cccggacgca cagcgaaact gatctcttta aaaagcgaag gatgggaaag
    21301 attttttact tccagttttg caggaacatt ttcatccggt atttccccaa gacgtgctgg
    21361 ccaaatattt ttcatttccc gaccaaccat ttgggcaatc aaatgctgga tatcactgtt
    21421 tttcttttca tgcgtggcga tatactcacc gtcgcggatc accgaaatat catctgaaat
    21481 ccgcataatt tcatccatgc gatgagagat ataaataacc gcacagcctc gctgctttaa
    21541 tttttcaata atgttaaaca gaatctccgc ttcattatca cttagcgaag atgtcggttc
    21601 atccataatc acgacatccg ctgcatagct taaggcttta gcaatttcta ccagttgcct
    21661 atgtgccatc gacatattgc cgaccatttc tagtgggtct agtggtatgc cccgttccgc
    21721 gaggagattc tggcaatctg cgagcatttt tttatcgtta ataatgccaa aacgtcgcgg
    21781 ttcattattg gcataaatat tttccgccac ggtcatatta ttactcaggc tcaattcctg
    21841 aaaaataatc gcaattccta actggcgtga atgctgcgga ttattaatgg tgatagtttc
    21901 accacgtagt gttatcgttc cctgggttgg cggataaaca ccggccagta ttttcattaa
    21961 tgtcgattta ccggcaccat tctcgcctaa taaagtatgc acccgccctt tacgtaaaga
    22021 gagggtaata tcttttaatg cttgaacatg accaaatgtc ttcgcaatat gcgaaacatc
    22081 aagaataaca tccgtcataa tgacctcggt gtcacaacaa aacgccaata acgttttgtt
    22141 gtgaggtgaa gatgtttact atttacctgt ataaacgccg ggttgtaccg ggatcatttt
    22201 ttctaccggt ttaccattga ggtgatcaac agcggcatca atggctttag cacccatttg
    22261 atcgggatat tgccgaatca cggccgcaaa cgttttttca ctgtcaacgg catcacgcgc
    22321 ttctttcatg ccatcaaaac caatgatttt gatgttgtcg ttatgcgcag attttgctgc
    22381 gataaccgct gccagcgccg catcatcacc aaagccaaac agaccattca ggttggcatt
    22441 tgcctgcata atgttttgcg cagtcgttaa cgcttcagcc cgcgtaatac taggctgttc
    22501 agcaacaatt ttaatatccg gtgtatcgct taaccctttc ttaaaaccat caacgcgcgc
    22561 aaccaccgat tgtagtgccg gataagaaat actggctaca gtacctttac cattcaaaag
    22621 tttgcccatt aacttgcctg cttcaacgcc tcccgcatag ttatcggtcg caacatgcga
    22681 tacgaccgga acgccttccg cagcgacgtc gacggtgata acgggaatac cggccttatc
    22741 ggctttaatt atcgccgcct ggacgccttt cgaatcgacc ggagagataa taatggcatc
    22801 cactttttta gtaataaaat cctcaacatc agaaagttgt ttgtttaaat cctgattggc
    22861 aaatag
//
LOCUS       DAJVSY010000057        22778 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.057, whole genome shotgun sequence.
ACCESSION   DAJVSY010000057 DAJVSY010000000
VERSION     DAJVSY010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22778
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.057"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..455)
                     /locus_tag="OQQ19_001961"
     CDS             complement(<1..455)
                     /locus_tag="OQQ19_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000755097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1803602.1"
                     /translation="MKKVFAKSLLVAAMFSVAGSALAVQKDITVTANVDAALDMTQTD
                     NTALPKAVEMQYLPGQGLQSYQLMTKIWSNDVTKDVKMQLVSPAQLVQSLDASKIVPL
                     TVTWGGEEIKADAATTFTATKIFASDALTNGSLAKNLMFAQTTKGVLETG"
     gene            complement(485..1201)
                     /locus_tag="OQQ19_001962"
                     /pseudo
     CDS             complement(485..1201)
                     /locus_tag="OQQ19_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000225871.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
     gene            1497..2273
                     /gene="exuR"
                     /locus_tag="OQQ19_001963"
     CDS             1497..2273
                     /gene="exuR"
                     /locus_tag="OQQ19_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ExuR"
                     /protein_id="HCS1803603.1"
                     /translation="MEITEPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNV
                     SRTVVREAIIMLEVEGYVEVRKGSGIHVVSNQPRHQQAADNNMEFANYGPFELLQARQ
                     LIESNIAEFAATQVTKQDIMKLMAIQEQARGEQCFRDSEWDLQFHIQVALATQNSALA
                     AIVEKMWTQRSHNPYWKKLHEHIDSRTVDNWCDDHDQILKALIRKDPHAAKLAMWQHL
                     ENTKIMLFNETSDDFEFNADRYLFAENPVVHLDTATSGSK"
     gene            2618..3280
                     /locus_tag="OQQ19_001964"
     CDS             2618..3280
                     /locus_tag="OQQ19_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1803604.1"
                     /translation="MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLP
                     AAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNW
                     LSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMS
                     GLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGN
                     RG"
     gene            3284..3667
                     /gene="mzrA"
                     /locus_tag="OQQ19_001965"
     CDS             3284..3667
                     /gene="mzrA"
                     /locus_tag="OQQ19_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EnvZ/OmpR regulon moderator MzrA"
                     /protein_id="HCS1803605.1"
                     /translation="MQIPRMSLRQLAWSGTVLLLVGTLLLAWSAVRQQESTLAIRAVH
                     QGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYI
                     IAQQDNNSQAMQWLTRLRDNSHRFG"
     gene            3814..4182
                     /locus_tag="OQQ19_001966"
     CDS             3814..4182
                     /locus_tag="OQQ19_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417568.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 domain-containing protein"
                     /protein_id="HCS1803606.1"
                     /translation="MKYRIALAVSLFALSAGSYATTLCQEKEQNILKEISYAEKHQNQ
                     NRIDGLNKALSEVRANCSDSQLRADHHKKIAKQKDEVAERQQDLAEAKQKGDADKIAK
                     RERKLAEAQEELKKLEARDY"
     gene            4220..4525
                     /locus_tag="OQQ19_001967"
     CDS             4220..4525
                     /locus_tag="OQQ19_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HCS1803607.1"
                     /translation="MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAE
                     QALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR"
     gene            4528..4932
                     /locus_tag="OQQ19_001968"
     CDS             4528..4932
                     /locus_tag="OQQ19_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HCS1803608.1"
                     /translation="MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEK
                     ANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIW
                     TLRKSRKSTLLRHTRHELANDRQLLEEESREQ"
     gene            4922..5221
                     /locus_tag="OQQ19_001969"
     CDS             4922..5221
                     /locus_tag="OQQ19_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqjK-like family protein"
                     /protein_id="HCS1803609.1"
                     /translation="MSSKVERERRKAQLLSQIQQQRLDLSASRREWLEATGAYDRRWN
                     MLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG"
     gene            5407..5799
                     /locus_tag="OQQ19_001970"
     CDS             5407..5799
                     /locus_tag="OQQ19_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008503138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HCS1803610.1"
                     /translation="MKKLEDVGVLVARILMPILFITAGWGKITAYSGTQQYMEAMGVP
                     GFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSKFAEGVNSLMFMKN
                     LTISGGFLLLAITGPGAYSIDRLLNKKW"
     gene            5869..6772
                     /locus_tag="OQQ19_001971"
                     /pseudo
     CDS             5869..6772
                     /locus_tag="OQQ19_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708909.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
     gene            7065..7430
                     /locus_tag="OQQ19_001972"
     CDS             7065..7430
                     /locus_tag="OQQ19_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HCS1803611.1"
                     /translation="MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKML
                     GWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFN
                     CQAGTPGENRFGPDPKLEP"
     gene            7672..8028
                     /locus_tag="OQQ19_001973"
     CDS             7672..8028
                     /locus_tag="OQQ19_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HCS1803612.1"
                     /translation="MQWYLAVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLIL
                     GLEFPFLSLIYLAATIIPVIALCVRRLHDTDRSGVWALLYLVPIIGWLVLFVFACLEG
                     NSGSNRYGNDPKFGSN"
     gene            complement(8079..8975)
                     /gene="yhaJ"
                     /locus_tag="OQQ19_001974"
     CDS             complement(8079..8975)
                     /gene="yhaJ"
                     /locus_tag="OQQ19_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator YhaJ"
                     /protein_id="HCS1803613.1"
                     /translation="MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQK
                     LEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIV
                     TEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSS
                     EINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLD
                     KQPRLTVSTIEDKRQALLAGLGVATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWR
                     RDSMGEAKSWCLREIPKLFSGK"
     gene            9080..9781
                     /locus_tag="OQQ19_001975"
     CDS             9080..9781
                     /locus_tag="OQQ19_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HCS1803614.1"
                     /translation="MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLN
                     QEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYS
                     EHNLSKDKPLTRMQLWLDACPQRENPLIQKLALNMGKQQLIASPEGTMGSLQLRQQVW
                     LHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITL
                     VADSPLRALLIDLPV"
     gene            9804..9968
                     /locus_tag="OQQ19_001976"
     CDS             9804..9968
                     /locus_tag="OQQ19_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312016.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803615.1"
                     /translation="MSKKSAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAE
                     TRLAEDEATA"
     gene            complement(10102..11412)
                     /locus_tag="OQQ19_001977"
     CDS             complement(10102..11412)
                     /locus_tag="OQQ19_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine dehydratase subunit alpha family protein"
                     /protein_id="HCS1803616.1"
                     /translation="MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAEL
                     EGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQ
                     AIADAKALLAAGKVSVKIQEPCNEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHNS
                     VVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEG
                     LSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQ
                     GITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAA
                     GMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDT
                     AVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR"
     gene            complement(11440..12772)
                     /locus_tag="OQQ19_001978"
                     /pseudo
     CDS             complement(11440..12772)
                     /locus_tag="OQQ19_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026203.3"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
     gene            complement(13046..14410)
                     /gene="tdcG"
                     /locus_tag="OQQ19_001979"
     CDS             complement(13046..14410)
                     /gene="tdcG"
                     /locus_tag="OQQ19_001979"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HCS1803617.1"
                     /translation="MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSH
                     IVVDLYGALSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGA
                     HIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLS
                     HDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHD
                     GIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENA
                     AGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISG
                     AEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPC
                     IERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIK
                     VVCG"
     gene            complement(14482..14871)
                     /locus_tag="OQQ19_001980"
     CDS             complement(14482..14871)
                     /locus_tag="OQQ19_001980"
                     /EC_number="3.5.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312020.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enamine/imine deaminase"
                     /protein_id="HCS1803618.1"
                     /translation="MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPA
                     DVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATY
                     PTRSCVQVARLPKDVKLEIEAIAVRSA"
     gene            complement(14885..17179)
                     /gene="tdcE"
                     /locus_tag="OQQ19_001981"
     CDS             complement(14885..17179)
                     /gene="tdcE"
                     /locus_tag="OQQ19_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-ketobutyrate formate-lyase/pyruvate
                     formate-lyase"
                     /protein_id="HCS1803619.1"
                     /translation="MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGD
                     ESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIV
                     GLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPD
                     MLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDL
                     EATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNG
                     GAMSLGRTASFLDIYIERDFEAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSG
                     DPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYA
                     AQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYA
                     INGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDK
                     YSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDG
                     EYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNT
                     PDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKE
                     DPVRKTNLVGLLDGYFHHEADVEGGQHLNVNIMNREMLLDAIEHPEKYPNLTIRVSGY
                     AVRFNALTREQQQDVISRTFTQAL"
     gene            complement(17213..18421)
                     /gene="tdcD"
                     /locus_tag="OQQ19_001982"
     CDS             complement(17213..18421)
                     /gene="tdcD"
                     /locus_tag="OQQ19_001982"
                     /EC_number="2.7.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417585.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionate kinase"
                     /protein_id="HCS1803620.1"
                     /translation="MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAF
                     LSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITD
                     EVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLP
                     WKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQS
                     VDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLS
                     SDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLI
                     RRLVMEHLAVLGVEIDTEMNNRSNSCGERIVSSENARVICAVIPTNEEKMIALDAIHL
                     GKVNAPAEFA"
     gene            complement(18447..19778)
                     /gene="tdcC"
                     /locus_tag="OQQ19_001983"
     CDS             complement(18447..19778)
                     /gene="tdcC"
                     /locus_tag="OQQ19_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine transporter TdcC"
                     /protein_id="HCS1803621.1"
                     /translation="MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRA
                     GFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF
                     LYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLM
                     VKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIM
                     VFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLF
                     TLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGH
                     YLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAM
                     GAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF"
     gene            complement(19800..20789)
                     /gene="tdcB"
                     /locus_tag="OQQ19_001984"
     CDS             complement(19800..20789)
                     /gene="tdcB"
                     /locus_tag="OQQ19_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional threonine ammonia-lyase/L-serine
                     ammonia-lyase TdcB"
                     /protein_id="HCS1803622.1"
                     /translation="MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEI
                     FLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGK
                     VVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIA
                     GQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAA
                     SFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQR
                     NKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA"
     gene            complement(20888..21826)
                     /gene="tdcA"
                     /locus_tag="OQQ19_001985"
     CDS             complement(20888..21826)
                     /gene="tdcA"
                     /locus_tag="OQQ19_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator TdcA"
                     /protein_id="HCS1803623.1"
                     /translation="MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIIND
                     IEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFG
                     FPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKL
                     QDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNG
                     ISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAV
                     WSKNYRIKKAASVLVELAKEYSSYNGCRRRLLIEVG"
     gene            22015..22359
                     /gene="tdcR"
                     /locus_tag="OQQ19_001986"
     CDS             22015..22359
                     /gene="tdcR"
                     /locus_tag="OQQ19_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator TdcR"
                     /protein_id="HCS1803624.1"
                     /translation="MTGITIFYGDNIIRYVVNTKKGLRPYFKQLPDNYQAKFELNLMS
                     KFSNFIINKPFSAINTAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSS
                     DRTSFCECNRFP"
BASE COUNT         5972 a         5764 c         5308 g         5734 t
ORIGIN      
        1 cctgtctcca gaacaccttt ggtggtttga gcaaacatca ggtttttagc cagagaaccg
       61 ttagttaacg catcggaagc aaagattttg gttgcggtaa aagtggttgc cgcatcagct
      121 ttaatttctt caccgcccca ggttactgtc agcggaacaa tcttgctagc atccaggctt
      181 tgaaccagtt gcgccgggga aactaactgc atttttacat ctttggtaac gtcgttagac
      241 cagattttgg tcatcaactg gtaagattgc agaccctgcc ccggcagata ttgcatttct
      301 actgctttcg gcaacgcggt gttatcggtc tgtgtcatat ccagagcggc atcaacgttg
      361 gccgttacag taatatcctt ttgtactgcc aatgcggagc ctgcaacaga aaacatcgct
      421 gcgaccagaa gagattttgc aaataccttt ttcattacta ttccttcgtt tattacaatg
      481 ataattaatg gaccgccagt tcaaactcgc cattatcttt ggtgatccag ttattatatt
      541 tgacaacgat tttgtcgtag ccagatatgc tttcaagatt tctttcctga ccagggaaga
      601 tgtttttatt tacggtctgt atcttacaat tttctttgct attattttta caataagcga
      661 tcgttaaaat ctttaagcgt tgattccctg cattaactaa tttttgggca gcatttactt
      721 ctaacttagc aataggttgc tgaggtggaa cactaacaac aatcccccaa attaagctaa
      781 cagttaactg catagagaaa tcttttttat ctgtggcaac gtcatcaata ctgggaaccg
      841 cttcaaattt aacgcgttaa tttttttctt tttgctctgg ttccattgca acaaagcgca
      901 cagttttgct actaccggct ggtaaagcga atttaggtgg cataacaacc agatgatttg
      961 catcaccgga tttaatctca acttcatttt cctgaggcgt cgatggatta tcgatacgga
     1021 atactgtcgc cttgatgtac tgaacttcat tacttttaga tattacgcga acgttgcctt
     1081 catcctgact attaatggaa acagccatag gataaacagt catatttgac tgtgccaaaa
     1141 aaggagcgaa cacgaataaa agcggcgcaa gccgtgataa gagattaatt ttcgccacca
     1201 tataaatttg atcttacaat attgtttcca aaaagttggt gtattagaga tgtagattta
     1261 ttgtaagtca atataaaaaa gcatttttag ttaatattaa atttaaaggc tgggaattaa
     1321 cttgctgaaa tttagtagct ttcacaatga cgatacttat tttttaggaa tttataaata
     1381 ttcacaatat taattcaata cattaattca atcaccaaat ttatatatga ccaatggcat
     1441 acccatgaat aaagtggtat gataacttcg tccgcattcc actccgggag acgcatatgg
     1501 aaatcactga accacgccgt ttgtatcaac aacttgccgc tgacctgaaa gagcgcattg
     1561 aacagggcgt ctatctggtg ggtgataaac tgcctgccga acgctttatt gccgatgaaa
     1621 agaacgtcag ccgaacggta gttcgtgaag ccatcatcat gctggaagtt gaaggctatg
     1681 tggaggtgcg taaaggttca ggtattcatg tggtttccaa ccagccgcgc catcagcagg
     1741 cggctgacaa taatatggaa ttcgccaatt acggtccgtt tgagttgctt caggctcgcc
     1801 agctcatcga aagtaatatt gccgagttcg cggcaactca ggtaacgaaa caagacatca
     1861 tgaaactgat ggccattcag gaacaggcgc gcggcgaaca atgcttccgt gattccgagt
     1921 gggatttaca gttccacatt caggtagccc tggcgacgca gaactccgcc ctggcggcca
     1981 tcgttgaaaa aatgtggacc cagcgtagcc ataacccgta ctggaaaaaa ctacacgaac
     2041 acattgattc ccgtaccgtt gataactggt gtgatgacca cgatcaaatt ctcaaggcgt
     2101 taattcgcaa agatccccat gctgctaagc tggcaatgtg gcagcatctg gaaaacacca
     2161 aaatcatgtt atttaacgaa accagcgacg atttcgagtt caatgccgac cgctatctat
     2221 tcgccgaaaa cccggtagtg catctcgata cggccaccag tggcagtaaa tgaaactcct
     2281 gtccgacagg cgctgcgacg cgcctgttcg cttcgtcggt aagcgaaaag tataaagtgt
     2341 cagcctgtgt aaatcctctc gccaccctcc cctgcattca gcaaaatcag actccacgga
     2401 catgtaattt tgataacgaa caacgttgac ctttgttaca attagattca atttgaattt
     2461 atgtttttga atgctttctt atctcacgat ttaacaggga atagttcagg ctgtgttgat
     2521 gtatcaaacc cgcagaacat accaaaacag caataacatt gcggtagtgc atcttttaaa
     2581 accagcgtgg cgttaaccga ttcaccagga ataatgaatg gaacttttga cccaattgct
     2641 gcaagccctg tgggcgcagg attttgaaac cctggccaat ccatcgatga ttggcatgtt
     2701 gtattttgtc ttgtttgtaa ttttgttcct tgaaaacggc ttgcttccag cggccttttt
     2761 accgggcgac agtttactgg tattggtcgg cgtgttgatt gcgaaaggcg cgatgggtta
     2821 cccgcaaacg attctgctgc tgaccgttgc cgccagcctc ggctgctggg tcagctatat
     2881 tcaggggcga tggctgggca atacccgcac cgtacaaaac tggctatctc atttacccgc
     2941 gcattatcat caacgcgcac accatctttt tcataaacac ggtttatcgg cgctgttaat
     3001 tggtcgcttt attgcgtttg tcagaacact gctgccgacg attgccgggt tatcagggct
     3061 gaataacgcg cgctttcagt ttttcaactg gatgagcggt ctgctgtggg tattgatcct
     3121 gacaactctg ggttacatgc tcggcaaaac gccggtattt ttaaagtacg aggaccagct
     3181 gatgtcatgc ctgatgctgc tcccggtggt gctgctggtg tttggcctgg caggttctct
     3241 ggtcgtgtta tggaaaaaga aatatggaaa tcgggggtaa gggatgcaaa tacctcgcat
     3301 gtcgcttcgc cagctagcct ggtccggcac tgttttactt ctggtcggca cgctgttgct
     3361 ggcctggtcc gcggttcgcc agcaagagtc tacgctggcg attcgtgccg ttcatcaagg
     3421 cacaacgatg ccagacggtt tttcgatctg gcatcacctt gacgctcatg gcattccttt
     3481 caaaagtatc acccccaaaa acgacactct gttaattaca tttgactcca gcgaccagag
     3541 cgccgccgca aaagcggtcc tcgacagaac attgccccat ggctacatca ttgcgcagca
     3601 ggacaataac agtcaggcta tgcagtggct gacccggtta cgggataact ctcatcgctt
     3661 cggataactt cctgttatcc gaaacatatc actcactttg gtgatttcac cgtaactgtc
     3721 tatgattaat gaggcggtgg ttaacactac cgcttcgttg tctggacaat cgttcctttg
     3781 taacaggtcc gaatcacaat ggaaggttca agaatgaaat accgcatcgc tttagctgtt
     3841 tctctctttg ctcttagtgc cggtagttat gccactaccc tgtgtcagga aaaggagcaa
     3901 aatatcctta aggagatcag ctatgccgaa aaacaccaaa accagaatcg tattgacggt
     3961 ctgaataaag ccctgagtga agtccgggcc aactgttcag atagccagct gcgtgccgat
     4021 catcacaaga aaatcgcaaa gcagaaagat gaggtggcgg aacgccagca agatttagcc
     4081 gaggcgaagc aaaaaggcga tgccgataag attgccaaac gcgaacggaa actggcagaa
     4141 gcgcaggaag agctgaaaaa gctggaagcg cgcgactact aactcacaat agtcactact
     4201 tactcacctg gagaaaacta tgtcaaaaga acacactacg gaacatctgc gtgctgagtt
     4261 gaaatccctt tccgatacgc tggaagaggt gcttagctca tctggcgaga agtcgaaaga
     4321 agagttgagt aagattcgta gcaaagcgga gcaggcactg aaacagagcc gttatcgcct
     4381 gggtgaaacc ggtgatgcca tcgccaaaca aacccgtgtc gcggcggcgc gtgctgatga
     4441 gtatgtgcgt gaaaatccgt ggaccggcgt gggaattggc gctgcaatcg gtgtagtgct
     4501 cggcgttctg ctgtcgcgtc gttaattatg gcggacactc atcacgcgca agggcccggt
     4561 aaaagcgttc tgggcatcgg gcagcgaatt gtttccatca tggttgaaat ggtggaaaca
     4621 cgtctgcggc tggcggtggt ggagctggaa gaggaaaaag ctaatctctt tcaactttta
     4681 ctgatgctgg gcctgacgat gcttttcgct gcatttggtc ttatgagcct gatggtgcta
     4741 attatttggg cggttgatcc gcaatatcgc ctgaatgcga tgattgccac caccgtggtg
     4801 ttgctgctac tggcactgat tggcggtatc tggacgttac gtaaatcgcg taaatccacc
     4861 ttgctgcgcc atacacgcca tgagctggca aacgatcggc aactgctcga ggaggagtcc
     4921 cgtgagcagt aaagtcgaac gtgaacgacg taaggcgcaa ctgcttagcc agatccagca
     4981 acaacggctg gatctttccg ccagtcgtcg tgaatggctg gaggcaacag gcgcttacga
     5041 tcgtcgctgg aatatgctgc taagtctgcg ctcctgggcg ctggttggca gtagcgtgat
     5101 ggcgatctgg acgattcgcc atcctaatat gctggtccgc tgggccagac gcggttttgg
     5161 cgtatggagc gcctggcgtc tggttaaaac gaccctcaag cagcaacagc ttcgcggtta
     5221 acttccctct ggccggagcc attccggccc tatccctcaa attttttgaa gatttttgac
     5281 agttttcctt gctaacaatc atcattcacc acgtttatga ttctctccat cgacagcaac
     5341 gacgctaata ccgcgccctt gcacaaaaaa acaatcagca gcctgagtgg cgcagtggag
     5401 agtatgatga aaaaattaga agatgttggt gtactggtag cgcgcatttt aatgccgatt
     5461 ctgtttatta ccgcaggctg gggaaaaatc accgcttact ctggtaccca acaatatatg
     5521 gaagcaatgg gtgtcccggg ttttatgctg ccgctggtga ttctgctcga gttcggtggt
     5581 ggtctggcaa tcctgttcgg tttcctgact cgcaccacag ccctgtttac tgcgggcttt
     5641 acgctgctga cggcattttt atttcacagc aagtttgctg aaggcgtcaa ctcgctgatg
     5701 ttcatgaaaa acctgacaat ttctggcgga ttcctgctgc tggcaattac cggtccgggc
     5761 gcgtatagca tcgaccgcct gctgaataaa aagtggtaag cacgcgctat acttaacgat
     5821 aaaaaacgag gaggaagctc ctcgtttttg ctattggagg agagaaaaat ggggcaactg
     5881 attgacggcg tctggcatga cacctggccc cactggcaca ggcggtttta tcgcagagaa
     5941 agatcgttat catctctatg tttcactcgc ctgcccgtgg gcgcaccgca cgctgatcat
     6001 gcgcaaactc aaaggactgg aaccgtttat ttccgtttcc gtagtgaacc cgctgatgct
     6061 ggaaaacggc tggacctttg atgacagttt tccgggagca accggagata cgctctatca
     6121 acatgaattt ctgtatcagc tttatctcca cgccgatcca cactacagcg gacgagttac
     6181 tgttcccgtg ctgtgggaca aaaagaacca caccattgtc agcaacgaat cagcagaaat
     6241 catccgcatg ttcaataccg cgtttgatgc gctgggcgca aaagcgggtg attactaccc
     6301 accagccctg caaacgaaaa ttgacgaact taacggctgg atttatgaca ccgttaacaa
     6361 cggcgtgtat aaagctggtt ttgccaccag ccagcaagcc tacgacgagg cggtggcgaa
     6421 agtgtttgaa tcgctggcgc gactggagca gattttaggc cagcatcgtt acctgaccgg
     6481 caaccagcta accgaagccg atattcgcct gtggactacg ctggtgcgtt ttgatccagt
     6541 gtatgtgacc cacttcaagt gtgataagca ccgcatcagc gattacctga atctgtatgg
     6601 cttcctgcgc gatatctacc agatgccggg gatcgccgaa actgtcaatt tcgatcacat
     6661 ccgtaatcat tacttccgca gccataagac catcaaccct acggggatta tttcaattgg
     6721 tccgtggcag gatctcgatg aaccgcatgg acgagatgtt cgcttcggtt aaaaaaaggc
     6781 accttacgag gtgcctctga taattagcta agtgcatgtt gttcatgtcg gatgcggcgt
     6841 gaacgcctta tcaaacctac aaaacgttta tattcaatat gttaaaatga ccgcgtaggc
     6901 cagataagcg tagcgcatct ggcgattttg cgcttgtcat cagtcttagc gcaccttcac
     6961 ggcactttat taattccttg aacgaatatt tactgccatt tcattcacgt ctattcttaa
     7021 tttgctgctt taaaaacaag tgattgagca aaattgaggc aaaaatggac tggtatctga
     7081 aagtactaaa aaattatgtc ggtttccggg gtcgtgcgcg gcgcaaagag tactggatgt
     7141 ttattctggt caacatcatc tttacgttcg tgctggggct gctggataaa atgttaggct
     7201 ggcaacgcgc cggtggcgaa ggcatcctga cgacaatcta cggtattctg gtgtttttac
     7261 cgtggtgggc ggttcagttc cgccgcctgc acgacaccga ccgctcggcg tggtgggcac
     7321 tgttgttctt aatcccgttt atcggctggc ttattatcat cgtctttaac tgccaggcgg
     7381 gtacgccagg cgaaaaccgc tttggaccag atccgaaact ggaaccttaa aacaaatctg
     7441 ctcgccggat gtctgactca tccggctttt atcatcatgt tgatgaatga ataatttact
     7501 aatgtttatt taaaatattt caatgtcgtt atataaatta cctataaaaa acaaccatgt
     7561 atttatctta aatatcaaaa cctttataac atccgaaaaa gaaagatacg aatagcattt
     7621 acacaatacc cggaatagac tttcgtcact tttaattaaa gggatgtttt tatgcagtgg
     7681 tatttagccg tattaaaaaa ttatgttggt ttctctggtc gcgcacgtcg taaagagtac
     7741 tggatgttta ctctgattaa cgccatcgtc ggcgctatta tcaatgtcat tcaattgatt
     7801 ttaggtttag agtttccatt cctttctctc atttacctgg cagcaacaat cattccggtc
     7861 attgctctgt gtgttcgtcg tctgcacgat actgaccgtt caggtgtgtg ggcgcttctc
     7921 tatctggtac cgatcattgg ctggttagtt ctgtttgtat ttgcctgttt agaaggcaat
     7981 tctggcagca atcgttacgg aaacgatcct aagtttggtt caaattaatc ttagaattgg
     8041 ggcgatattt cgcccctttt tattaacaat aataaatatt attttccgct aaaaagtttg
     8101 ggaatttccc gcagacacca ggatttcgct tcccccatac tgtcacgacg ccaggccata
     8161 ataatatcga tctcgctggt cgattccggg ctgacgacac gcaaccgccc ttccgcaata
     8221 tctttttcga ccatcggata cggcatcgtc gccacgccaa gccccgccag taatgcctga
     8281 cgtttatctt caatcgtgct caccgttaag cgcggctgtt tgtccagcag ctgtacggtc
     8341 aacaccgggc gctcacgagc ggtatccgct accgcaattc cacgatattt cacgcgcgtc
     8401 acttcagata acggttccgg ctcctgatga atcgggtgat caggcgcggc aacgtagacg
     8461 ttcattaagg tatagagctt gcgcgagttg atctccgacg aggaacgaaa atgcatatcc
     8521 ggcgcgataa cgatatccgc ccgcccctgc tccagtcgtt cccacgcccc cgccagcact
     8581 tcggtgatga ttgccagttg ggtattggct tttgccgcca gtttgtcgat taacgggaaa
     8641 aaggcaggtg tcggtaccag cgcctcggtc acaatggtga gatgcgtttc ccaaccgcgc
     8701 gcgagggctt ccgcatcggt agtcagttta tctgctgctt ccagcaaaac gcgccctcgc
     8761 tccagcaaca tcctcccgac attggtgaat ttggtgcgat ggcccgagcg gtcaaacagc
     8821 accacatcca gctcttcttc cagtttttgc atggtgtagc taagtgcgga aggcacgcgt
     8881 cccagctcat ccgccgccgc cgcaaaactg ccccggcgat cgatcgcatc cataacccgt
     8941 agtgcttcca gcgttaatgc cctttctttg gccatttcgt tctcattcag gaaatttgaa
     9001 cataccgggc agaatatctg gctaacaatg tagcgtccag ccccttacca taaaaggaag
     9061 taaagagagg tcaagaatta tgattactac ccgaactgcc aggcagtgtg gacaagcaga
     9121 ctacggatgg ttgcaggccc ggtatacttt ttcctttgga cactacttcg acccgaaatt
     9181 gttaggctat gcctccctgc gtgtgcttaa ccaggaagtg ctggccccag gtgccgcctt
     9241 tcagccgcga acctatccca aagtcgatat tttaaatgtg attctggatg gagaagcaga
     9301 gtatcgcgac agcgaaggca atcatgttca ggccagcgcc ggtgaggcgt tgctgctctc
     9361 tacccagccg ggtgtcagct acagcgaaca caatctcagc aaagacaaac cgttaacacg
     9421 aatgcagctt tggctggacg cctgcccgca gcgagagaat ccgctgattc aaaaactggc
     9481 gcttaatatg ggcaagcagc aattaatcgc ctcgccagag ggtacgatgg gaagcctgca
     9541 attacgccag caagtgtggc tgcaccatat cgtgctcgac aaaggcgaaa gtgcgaattt
     9601 ccagttgcat gggccacgcg cgtatttgca atcgattcac gggaaatttc atgcgcttac
     9661 gcatcatgaa gagaaagcgg cgctgacctg cggtgatggg gcgtttattc gtgacgaggc
     9721 taacattacg ctggttgccg attccccact gcgcgctttg ctgatagatt tgcctgtcta
     9781 gttgttttta cagggagatg atgatgagta aaaaatcggc caaaaagcgc cagccagtga
     9841 agcccgtggt ggcgaaagaa cctgctcgca ccgccaaaaa ttttggctat gaagagatgt
     9901 tgagcgagct ggaagccatc gtcgcggatg ctgaaacgcg tttagccgag gatgaagcta
     9961 ccgcgtaaag acaggttgcc ggatgcggcg aaaacgcctt atccggccta caaaatccaa
    10021 caacattaac gaattaaaca acccgtaggc cggataaggt gcgccagcat cgcatccggc
    10081 acaatactca aaacctggcg tttatctggc cttgctcgcc ataatctcga taatctgccg
    10141 atccgtttgc tgcatcgaat ggcttgctaa cgcacacagg ttggcaatcg actgctcaac
    10201 atcatgcgcc acgatccctt cattgccggt cacggcggta tcatccagcg ccattaacac
    10261 cgctttccac gcagccgaag cactggtcga aaccttcatc gcgcagctgt tcgacgcacc
    10321 atcgcaaatc atgccgctga catcgccgat catactgctg atcgccatcg agatagtttc
    10381 ataacgccca tccaccagcc atgccatccc agcggcggcc cccattgctg cggtcgttgc
    10441 ggcacaaagt gcagacaaac gcggtaactg gttatggatg taaattgcgc tcaaatgaga
    10501 aagcatcagc gcacgcgcca gtcgttcatc atccgctccg aagtgttctg ctacaaccac
    10561 cacaggcatt gttgcggtga tcccctggtt acccgagccg gagttactca tagccggaag
    10621 cgtagcgccg cccatacgcg catcggatgc cgcgctggta cgaatcacaa tggatgaaga
    10681 gagatctttc gccagcaaac cgcgctcgca ctgtttttcc agcgtcgcgc caatatgcag
    10741 cccccactta ccgctcaaac cttcctgcga taacgcacaa tttagcttcg cggaatcgag
    10801 aataaagcgg atcgccgcaa acgggacttc attgacgaac ttcaggatct cagccagcgt
    10861 cgttctggaa agcaccgtca gcggagactc ttgctcgccc tctgccacac acgcctgctg
    10921 ggtaaacacc acactattgt gcgtctcaat atgcacaatg ttggtatgcc cgccgacgat
    10981 ggtgacacac gcccacttct caccgttcca gactttggcg cgtgagaaga ggatttcatt
    11041 gcaaggttcc tggatcttaa cggagacttt ccccgccgcc agcagtgctt tggcatcggc
    11101 aattgcctgc gcagttgcgt ctttcagcac ttccagcccg gcgttggcat ttccacctaa
    11161 cgcccccagc gccgccgcaa tcggcagccc caccattccc gtgccgggaa cggtgacgcc
    11221 cagaccgttc ttcatcagat ttggcgaaac ccaggcttct acacgttcaa ccggaccttc
    11281 cagttctgcc gcagcaaccg ccgccgccag cgccagtgaa atcggttcag tacatcccag
    11341 cgccggtttt acttcctcct gaacggcgag gatgtaacgc tgccataacg gatttaaagt
    11401 cgaatcaaac atattaaaaa ccttaaaatt tcaggtaaat caagaaaatg ccaggaacgg
    11461 agaaacacaa agcaacaaac cagtgacgat aatcaggtac agagacatcc ctttgtattt
    11521 gtgcaatgcc ggtactttgt aaaccagcca cgccgggatc aggcacccta ccatgccgaa
    11581 aatcgggcta cagatagagg tgaagctcaa caccggtgcg ttcagtacga tggcgctcca
    11641 ggccagcaaa atggcgaaaa tcatgatgcc gcgctgaaca agattttcgt taatcttctc
    11701 ggcaggcatc ttgcgacgca ggatgttcat tacgatccct tgcgttgctt cgcgaaagcc
    11761 taaatagacg ccaaagaatg cagtcatgac agcaaagata ttgagaatga cgctgaccac
    11821 tttcacccac gctgcgccgt caccgctaat aaactgtgcg gcaatcgcca gcgcggaaat
    11881 attctgctcg taggctttta ccgcttcgtc atgtcccatc gccagcgtga acgacacggc
    11941 gtagaaaaag acggtgacaa ataaaatgcc aaacgcgata ttcattgccc gcaatgcttt
    12001 atgccgcgcc acttcaattg atttttcccg cgagcgataa gagatcacca tcgggcttaa
    12061 cgtctggata aacagaatcg acgtcagggt aaacggcagc gtaataatgg cgtttttcac
    12121 cagcagcccc agcggcggta gcgaaccgac gttatacaga tgccacattc ccaccatcga
    12181 cacgcccagc gcagcgacta ccagcagctt ggtcagcacc atgccggtcg aaattttgaa
    12241 taacaatttc tcgccgcgtg aagagatcgc caccagaatg caaatcagta ccagaccata
    12301 aaagggactg tctgacagca ccccttccgt cacgccgaag gtatgcagat aggaagcact
    12361 atcgttggtg atggcggtgg aatagacgaa catccaaatc accagcatta cgaaatagag
    12421 cgcacctaac aggatgcccc agtttttacc taaataaccg ctaatgacac tcgggtaatc
    12481 tttacattct gtgtgattct gccagcgtat taataaacaa ccgctgaaac agatacattg
    12541 ccgggtaacc aatcaccgat gagagcaaaa atacccacaa tcccatcaaa ccgacctgca
    12601 ccgggagaaa aacaatcccc gcgccaatcg ccatcccgat actcataatc acccagccgg
    12661 tgtcagtact gtcgaatttg atcgcttctc gccactcgct ctcactcatt ccagcacgac
    12721 ccgccggggt cgaagcgtct gcaatgacgc ctttattcga tgcaatttcc ataatttctc
    12781 gctcaatatt ttgtagggct tattattttt ttccgagccg catcaaggcg atatgcggtc
    12841 tacgtttttg caggcgagtt attagaataa agaaatgata cgcgcgaggt cagagaaaat
    12901 cttcacaatc aagactttga aataacggag atggataaga attttctact aaattaatcg
    12961 caagagaata ttcattctct atttgcggca gatcacaaaa aaaggtgcac atttgtgcac
    13021 ccaaggatga aagctgacag caatgtcagc cgcagaccac tttaatggcc agtcctccgc
    13081 gtgatgtttc gcggtattta tcgttcatat ctttgccggt ttcatacatc gtctcgatca
    13141 ctttatcgag tgaaacacgc ggtgccgagg tgcggcgcat cgccatccgc gcggcgttta
    13201 ctgctttcac ggcattaatg gcattacgtt caatgcacgg gatttgtacc tgtccggcaa
    13261 ccggatcgca ggtcagccca aggttatgct ccatcgcgat ttccgccgca ttgcatacct
    13321 gcgccggact gccgcccagt agttcagtta accctgccgc cgccattgaa caggccacgc
    13381 caatctcccc ctgacagccg acctccgcgc cagagatgga ggcgttcatt ttatacagcg
    13441 cgccaatagc ccccgctgcc agaaaatagc gggcaattga ccgctcgttt accggacgac
    13501 ggaacttatc gtaataagcc agcactgccg gaataatgcc gcacgcaccg ttagtcggtg
    13561 ccgttaccac gcgcccgcca gctgcgtttt cttcactaac cgccagcgcg tacatgttga
    13621 tccagtcgat gacattcatc ggatcgttag agatgttatc gctagaaacc agctgacgac
    13681 gcagcgctac ggcacgacgc ggcacattga gcggaccagg cagcacgcct tcagtgttca
    13741 tcccgcgttc aataccgtca tgcatcactt gccagatacg ggcaaaccct gcgtcaattt
    13801 ccgctttgct gcgcagcgcc agctcgttgt gcatcatcag gccagatata gacaggccgt
    13861 tgtaatcaca cattttcagc agttcacctg ctgagtggaa atcgtaaggt acggacgttt
    13921 cgacatcgtg cgacaggccg aagtgttctt cttcgacaat aaacccgccg ccgacagagt
    13981 aataggtttt acttaatagc gcttcctgtc ccttccaggc agtgatccgc attccgttct
    14041 catggcgagg caacatttcg ggatggaaga taatgttctt tgctacagga aaatcaacaa
    14101 tatgcgcacc agatgccact ggcagccgcc cgctgcgcgt tactaactct ataaatgcag
    14161 ggatctcatc aatgacaaca tcctgcggac tgtttcctgc cagtcccatg ataatggcga
    14221 catccgtggc atggcctttg cccgtcagtg acaacgcccc atacagatcg accacaatat
    14281 ggctcgtcgc ggttaataag ccgctacttt ccagccgatc aataaaactt tttccggcat
    14341 tcattggccc cacggtatgc gaactggagg gaccaatccc aattttgaaa atatcgaatg
    14401 cactaatcat atccacaccc tcggattgcc gttcagtgaa gtggagcgga acgaccttgc
    14461 gaccgtcccg ctcacgaggc tttacgcact acgtactgcg atagcttcaa tttccagctt
    14521 cacatctttc ggcaaacgcg caacctgcac acagctccgg gtcgggtagg tcgcctgatg
    14581 ctcatcgaag aactgcttat agacttcatt gatggtggca aaatcattca gatcggtgat
    14641 gaacacggtc atcttgatga tatcgcccac gctcagcccg gcagcaacca cgatcgcttt
    14701 gacgttttcg aggcttaaac gcgcctgatc ttgcacatca gccgggatct caccggtctg
    14761 cgggcaaacc ggaatttgcc cggaggtgaa gaccatgctg cctaaatcaa cgccctgaac
    14821 ataagggccg attgcgcctg gggcacgttg cgtttcgata atctttttca tacatcctcc
    14881 ggcgtcagag cgcctgggta aaagtacgtg aaataacatc ctgttgctgt tcacgggtca
    14941 gtgcgttgaa gcgcacggcg tagccagaga cacggattgt caggttagga tatttttccg
    15001 ggtgctcgat ggcatccagc agcatttccc gattcattat gttgacgttg aggtgttgac
    15061 cgccttcgac atccgcttcg tggtggaaat acccatccag caggccgaca aggttggttt
    15121 tacgtactgg atcttctttg cccagcgccg caggaacgat tgagaaggtg tacgagatcc
    15181 catctttggc gtaggtgaac ggcagtttcg ccaccgacgt caatgaggcc acggcacctt
    15241 tgcggtcacg accatgcatc gggttagcgc ccggcgcgaa cggtgttccg gcgcgacgac
    15301 cgtccggcgt attaccggtt ttctggccgt acaccacgtt agaagtgata gtcagaatcg
    15361 actgggtagg gacggcgttg cgataggttg gcagcgcttt aattttcttc ataaagcgtt
    15421 caaccaggtc gcaggcaatg ctgtctacgc gctcgtcgtt gttgccgtac tgcggatatt
    15481 caccgtcgat ttcaaagtcc accgccaggc cgttttcgtc acggattggt ttcacgcggg
    15541 catatttgat ggcagacagg gagtccgtcg ccaccgacag gcccgcgatg ccgcatgcca
    15601 tagtgcgata gacatcacga tcgtgcagcg ccatcagcga agcttcgtag ctgtacttgt
    15661 cgtgcatgta gtgaatgata ttcagcgcgc tgatgtactg caccgccagc cagtccatga
    15721 agtgatcgag gctgtccatc actttgtcgt aatccagcac gtcgtccatc agcggtgctg
    15781 ttttcggccc gacctgaatc ttcagcttct cgtccacccc gccgttaatt gcgtagagca
    15841 gcgttttcgc caggttagcg cgtgcaccaa agaactgcat ttgcttacca atcaccattg
    15901 ggctgacgca gcaggcaatc gcgtaatcgt cgctgttgaa gtcagtacgc atcagatcgt
    15961 cattttcata ctgcaaggaa gaggtgacga tcgacacctg cgcggcatat tttttgaagg
    16021 caatcggtaa ttcttccgac caaagaatgg tcaggttagg ttccggtgcc ggccccatag
    16081 tgtgcagggt gtgcaaatag cggaaggagt ttttggtcac cagcgtacga ccgtccagcc
    16141 ccatcccgcc gatcacttcc gtcgcccaga ttgggtcgcc ggagaacagc gaatcaaatt
    16201 ccggtgtacg caggaagcgt accatacgga tcttcatgat gaagtgatcg atcagttcct
    16261 gtgcctgctg ctcattgagt acgccagctt caaagtcgcg ctcaatgtag atatcgagga
    16321 acgatgccgt gcggcccagc gacatcgcgc cgccattttg cgatttcact gccgccagat
    16381 aagcgaagta gagccactgc accgcttctt gcgcattctg cgccgggcga gagatatcaa
    16441 agccatattt cgccgccatt tcctgaatct gcaacagcgc atgacgatgc tctgccagct
    16501 cctcacgcag acggatggtg gcttccagat cctcgccttt ttccagacga gactggagat
    16561 cggcaaattg cagttcgcgt tcacgtacca gataactgat gccatacagc gctacgcggc
    16621 gatagtcacc gataatgcgc ccacggccat agccatctgg taaaccggtc agcacgccag
    16681 atttacggca gcgcagcata tccggtgagt aaacatcaaa tacgccctgg ttatgggttt
    16741 tacgcagatc ggtaaacaga tattcaaatt cactgtccat ttcacggcca taggcgtgga
    16801 atgaactttt aatcatatta atgccaccga acgggtgtag cgcacgtttc aacggcgcat
    16861 ccgtttgcag gccaacaatt ttttccagcg gctggttaat atatcccgca tcatgagcgg
    16921 taattgtggt ggcaatattg gtatcgaaat caaccggcgc gtgggttgcg ttttcgatac
    16981 ggataccttc cattactttt tcccacaatt ccgtggtggc aggcgtcgct tcggcgagga
    17041 aagattcatc gccttcatac ggtgtatagt tatgttgaat aaaatcgcgg acattaattt
    17101 cgtttttcca gtccgtacct ttaaagccaa gccatgcgtc ggcgtacagc ttatcgctgg
    17161 tatcaatatc taccttcatg aaaaataatc tctctacaat acttcaacta aattatgcaa
    17221 attctgcggg cgcgttaact ttgcctaaat gaatggcatc caaagcaatc attttttctt
    17281 cgttagtcgg aataacagcg caaatgacac gcgcattttc actggaaaca attcgctcac
    17341 cacaggagtt agagcgatta ttcatttctg tatcaatctc tacgcctaat acagccaaat
    17401 gttccatgac cagacgacga attaagcttg aattctctcc tattccgccg gtgaatataa
    17461 ttccatccag gcgacgtaat gaagctgcgt gtccggcaat atgacgggca attcggtgaa
    17521 caaaggtttt aattgccagt tgcgcgcgtt cgtgaccttc atgccaggct ttttccagaa
    17581 cacgtaaatc cgaagaaaga ccggaaatac ctaataatcc cgactcttta ttcactacgc
    17641 gttccaggtc acccaagctc tggttggttt ggctggcgac ccaggacatc gcaccaaaat
    17701 cgacatcgcc actgcgggta cccatcatca agccttccag cggcgtcatt cccattgagg
    17761 tgtcaacact ctgaccgttg cgaactgcgc agattgacgc gccattgcca agatgcgcca
    17821 caaccaggcc ggagtcatct tccgctagat tcagcaaaga atgtgcgcgc tgggaaacat
    17881 agcggtgcga cgtgccgtgg aaaccataac ggcgtacacc taactcttca taatatttcc
    17941 acggcaggcc gtataaataa gcttccggag ccatcgtctg gtggaaactg gtatcaaata
    18001 ccgccacctg agttacgccc ggaaataatt gctgcgccga ttcaatacca cttaaattgg
    18061 cgtaattatg caggggtgcc agtggagaaa cgcgacggat attatcaatg acctcatcgg
    18121 taataatggc ggactcggta aaaatactgc cgccgtgagc gatgcggtgg ccaattaagg
    18181 ccacactgtc atttaaattc cgtttttcca gttcaaatgc aattgccttc aatgcacctt
    18241 cgtagctgtg gtgagccagc ggtgctggct ctcccccatt tacggataag aatgcatttt
    18301 ctgagttaat accgtcggca atacctgaca ttaatacttc acagtcgctg gcatcgagta
    18361 cggaaaactt aatcgaagac gaaccacagt taataaccaa aacaaccgga aattcattca
    18421 tctcttttct catcctgagt tacggattaa aacagtttgt atacgatgtt caggatggtc
    18481 agcagaccaa tcacggtaac aaacacgtta tccagacgac cacggtattt cgccagagac
    18541 ggtgctttac ggatggcata catcggcaac aggcacagca gggatgcgat aatcggtgcg
    18601 cccatggctt caataaggtc gaggatgttc gggttggcgt aggcaacaac ccaggtggag
    18661 cccatgatga agatcatgct gatagtgttc agtttaccca gcgacacttt agttttgtcg
    18721 cctttataac cgaacttcag aatcagacca ttcaagcctt ccagcgtccc cagatagtga
    18781 ccgaagaaag atttgaagat agccacgagt gcgatgatgg aagccgcata ttccagtgta
    18841 atcgcgaacg ttgttttggt accggtcatg gacgcaaagt ggttagccag ataagaaagc
    18901 actggaatat tctgcgcttt ggcttccgcc atgttggccg gagacagcgt aaacaggcag
    18961 ctaaaggcaa agaacatcac cactgcaacc atcagcatgc tggcacgaga aatgatttgg
    19021 gaacatttac gttcggtgaa gtcgcgaccg aagtctttct catactcttc acgtttagaa
    19081 accacgaagg aagagacgat tggcgagaag ttaaaggaga aaaccatgat ggaaatcccc
    19141 agccagacag tgatcaggat accgtcatga ccggttaacg acagcgaacc gaggtcaacc
    19201 tggtcgataa ctgcagagtt ccagtaaggg atcagcgaca gagaaatcag caccaggctg
    19261 gcgataaacg gccataccag gtagctcatc actttaacca tcagatcctt accaaaccag
    19321 atgacgaaag ccatcagcag caacaggaac agcgccacaa agccgcgatt cagcggtgca
    19381 aatccgagct ggttttccca gaacgtcata aaggtattgg taatagtaac gccataaatc
    19441 cacagcagtg ggcaaatcgc gaagaagtac aggaacgtga taaccacgcc gccagtttta
    19501 ccaaaatgct cttccaccgt ttccgtaatg ttgccggaag ggttagagcc agaaagacac
    19561 agacgcgcca gcgcccggtg gcaataaaat gcgatggggt atgccaatac caacatcaga
    19621 agaatcggga tcagtccgcc aaaacctgcg cggataggga agaacagcac cccggcgccg
    19681 attgccgtac caaacaagcc taacgtccat gtggtatctg atttacgcca ggacgattgt
    19741 tttgtctggc tggatacaat gctatctgaa gtactcatat cctatcctca acgaattaat
    19801 taagcgtcaa cgaaaccggt gatttgagag acgcgagaaa gatcgatatt gccgccggaa
    19861 ataatactga cggtttttct gttttgaata tattggtcta atttaccgct taataatgca
    19921 gcacatgcca gagcacctgc gccttcggtg acgactttat tgcgctgaat taaggcaatc
    19981 atactgtttc tgatttcgtc ttcgctgacc agcacgatgt catcgactaa ttcacgaacg
    20041 atttcgtaag ttaaattacc cgggcgggag acatcacaac catccgccag ggtgccggta
    20101 gttcggtgcg tggttatttc tccggagtgg aaagaagccg ccatgccgtg aacgttttct
    20161 gactgtacgc caataacacg aatggtcggg ttaatagatt taattgccac cgcaatacca
    20221 gcaattaaac caccaccacc aattggcaca atcacgttat cgacatcata gagatcttcc
    20281 ataatttcca gaccaatcgt tccctggcca gcaatcactt tcggatcatc gtaaggtggg
    20341 ataaaaatac gaccttccat ttcgacaatt tcgctcactt tagcgatagt gtcgttgaag
    20401 ttatcaccat gcagaacgac ttctgcggag tagtcgcacg ttgccgctac tttggatttt
    20461 ggcgcacctt ttggcatcac cactttaccg tcgataccca gcatcgcgca ggagagcgaa
    20521 accccttgcg catggttgcc cgcagaacag gccaccacgc ctttgcgttt ttccgcatcg
    20581 gtcagtgaac ttaatttatt aaatgcgcca cgaattttaa atgaacccgt acgctgcata
    20641 ttttcaaact tcaggaatat ttcacctttg caacgttcac taaaatagtt ggagcgaggc
    20701 atgcctgttt tataaattcg cccagccagt cgttgtttcg cttcaataat atcatcaata
    20761 gcaaccggca gatcgtatgt aatatgcatt ataaaacctc ttcgcctgaa ttaaatatgt
    20821 agataaccgt aaccgacacc tgcaaaacag acaggtggat tatttatgtt taaataaaaa
    20881 caaataacta accaacttct attaatagcc ttcgtctaca cccattataa gatgaatact
    20941 ctttggctaa ttccaccaaa accgatgctg cttttttaat acgataattt ttcgaccata
    21001 ccgcggcata ttgtgccaca ggtaatgttt cttcaactgg aatagtaata aattgatttg
    21061 aaccaaaagg tgacgtcata tcacaaggaa ttacagttaa gaaatcagca ttgagaacaa
    21121 gattataaat tgtcacgact gagtcggttt taacgatgtt ttcaatactg atgccatttc
    21181 tttgtaacgt agtaagaagc tcgctgtagt accccatatt ggtttgtggc aacacccact
    21241 gttcgttctt caacgactcc agcgtggtgg tgccggtgca tgttcgggac ttactggcta
    21301 ccagcacaaa ctcggactcg aacagcggct caacatgtaa atcctgaagc ttcatttctg
    21361 cacttaacgt accaatcgca aaatccagtc gaccgtcgcg gattgccggt aagaacgaag
    21421 acagttgcgc ttcatacata gaaacctgcg ctttcgggaa cacctctttg aacttgttga
    21481 tcatccctga cataaaagta aaaccaatca atgaaggaaa accaaatgag acttccacca
    21541 ccgcctcaga agacataccg cttatctcat taaccatatt tttcatttca cgggtaatgg
    21601 attcggaacg ggagagtaac aattgaccgg caggtgttaa tgttacaccg gtatttttcc
    21661 gcaccactaa ttccacacca aaataatctt caatatcgtt aatgatttta ctgacggccg
    21721 gttgagttaa ccctaattct tttgcagccg agccgataga gccacttcta atgacttcct
    21781 gaaagactac caggtgctgc gttttcggaa gaagaatagt gctcataacg acctacgtta
    21841 attacctcat tgacggcatg aagtgtatca aaatgaaatg aacaggatat gtgcgaccac
    21901 tcacaaatta actttcatta ctttccaggg tatcgttatt acaattaaat atctttaaat
    21961 atcaacaagt taaaacataa aaatcagcat aaaccctgat ttttatcaaa aaaaatgacg
    22021 gggataacca tattttatgg cgataacatc attcgttatg tggttaatac aaaaaagggg
    22081 ctgagaccat atttcaagca attaccggat aattaccagg caaaatttga gttaaattta
    22141 atgagcaagt tctcaaattt tattataaat aaaccatttt cagcgataaa tactgcggca
    22201 cgtcacattt tttcacgcta tttgttggag aacaaacatt tattttatca atattttaaa
    22261 atttcgaata caggtattga tcatctcgaa caattgatta acgtcaactt tttctcttct
    22321 gacaggacgt cattttgtga atgcaatcgt tttccataaa ttcttctccc ctcataggcg
    22381 acgaatagca ttttgtgttg aggatcacaa aacaaataat tgctggtcgc cgcgataagg
    22441 tcagacgaag tcaacaaggg gaattttcac tgtgctttac atcagcgtag gacacagaat
    22501 gttgcttcgt ttactgtaac gccgggtaaa tgagcgtttt ttgatagtgc gtaagtgtcg
    22561 tgcgaggaaa ataagcatct attattgttt gtcatgacga caaggcaggc atcaatgaaa
    22621 ggcttcccaa ttgcacatat ttttcaccct tcaatcccgc caatgcacgc agtggttaac
    22681 aatcacaata gaaatattga ttattggacg gtaaaaagaa agtttgcaga aattgtctcc
    22741 accaatgacg ttaaaaaaat ttacagtata agtaatga
//
LOCUS       DAJVSY010000058        22767 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.058, whole genome shotgun sequence.
ACCESSION   DAJVSY010000058 DAJVSY010000000
VERSION     DAJVSY010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22767)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22767)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22767
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.058"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            112..718
                     /locus_tag="OQQ19_001987"
                     /pseudo
     CDS             112..718
                     /locus_tag="OQQ19_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001544752.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            821..1323
                     /locus_tag="OQQ19_001988"
                     /pseudo
     CDS             821..1323
                     /locus_tag="OQQ19_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311186.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YfbM family protein"
     gene            complement(1390..2847)
                     /gene="nuoN"
                     /locus_tag="OQQ19_001989"
     CDS             complement(1390..2847)
                     /gene="nuoN"
                     /locus_tag="OQQ19_001989"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416779.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HCS1803625.1"
                     /translation="MTITPQNLIALLPLLIVGLTVVVVMLSIAWRRNHFLNATLSVIG
                     LNAALVSLWFVGQAGAMDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNK
                     DEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYT
                     ILSAAASSFLLFGMALVYAQSGDLSFVALGKNLGDGMLNEPLLLAGFGMMIVGLGFKL
                     SLVPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAII
                     AFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEMSMEAVGVYLAGYL
                     FSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGF
                     IGKFYVLAVGVQAHLWWLVGAVVVGSAIGLYYYLRVAVSLYLHAPEQPGRDAPSNWQY
                     SAGGIVVLISALLVLVLGVWPQSLISIVRLAMPLM"
     gene            complement(2854..4383)
                     /gene="nuoM"
                     /locus_tag="OQQ19_001990"
     CDS             complement(2854..4383)
                     /gene="nuoM"
                     /locus_tag="OQQ19_001990"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HCS1803626.1"
                     /translation="MLLPWLILIPFIGGFLCWQTEHFDVKVPRWIALITMGLTLALSL
                     QLWLQGGYSLTQSAGIPQWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAV
                     LCSWKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHK
                     ASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSG
                     VEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSL
                     PLFPNASAEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGS
                     QLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFA
                     VATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKS
                     QIASQELPGMSLRELFMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQWFVNSVTTTR
                     P"
     gene            complement(4547..6388)
                     /gene="nuoL"
                     /locus_tag="OQQ19_001991"
     CDS             complement(4547..6388)
                     /gene="nuoL"
                     /locus_tag="OQQ19_001991"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HCS1803627.1"
                     /translation="MNMLALTIILPLIGFVLLAFSRGRWSENVSAIVGVGSVGLAALV
                     TAFIGVDFFANGEQAYSQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMY
                     ASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTD
                     PKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWA
                     TLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMT
                     PEILHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFH
                     LMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYFCFLVGGAALSALPLV
                     TAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAVKG
                     VTHSLPLIVLLILSTFVGALIVPPLQSVLPQTTELAHGSMLTLEITSGVVAVVGILLA
                     AWLWQGKRTLVTSIANSAPGRLLGTWWYNAWGFDWLYDKVFVKPFLGIAWLLKRDPLN
                     SMMNIPAVLSRFAGKGLLLSENGYLRWYVASMSIGAVVVLALLMVLR"
     gene            complement(6385..6687)
                     /gene="nuoK"
                     /locus_tag="OQQ19_001992"
     CDS             complement(6385..6687)
                     /gene="nuoK"
                     /locus_tag="OQQ19_001992"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006683663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HCS1803628.1"
                     /translation="MIPLQHGLILSAILFVLGLTGLVIRRNLLFMLIGLEIMINASAL
                     AFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG"
     gene            complement(6684..7238)
                     /gene="nuoJ"
                     /locus_tag="OQQ19_001993"
     CDS             complement(6684..7238)
                     /gene="nuoJ"
                     /locus_tag="OQQ19_001993"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001774950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HCS1803629.1"
                     /translation="MEFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFF
                     SLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAI
                     MLVVIVYAILGVNDQGIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR
                     EERAGEVLSNRKDDSAKRKTEEHA"
     gene            complement(7250..7792)
                     /gene="nuoI"
                     /locus_tag="OQQ19_001994"
     CDS             complement(7250..7792)
                     /gene="nuoI"
                     /locus_tag="OQQ19_001994"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015959823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HCS1803630.1"
                     /translation="MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRY
                     RGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFC
                     GLCEEACPTTAIQLTPDFEMGEYKRQDLVYEKEDLLISGPGKYPEYNFYRMAGMAIDG
                     KDKGEAENEAKPIDVKSLLP"
     gene            complement(7807..8784)
                     /gene="nuoH"
                     /locus_tag="OQQ19_001995"
     CDS             complement(7807..8784)
                     /gene="nuoH"
                     /locus_tag="OQQ19_001995"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015875065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HCS1803631.1"
                     /translation="MSWISPELIEILLTILKAVVILLVVVTCGAFMSFGERRLLGLFQ
                     NRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVP
                     VSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFL
                     GLSLMGVVAQAGSFNMTDIVNSQAHVWNVIPQFFGFITFAIAGVAVCHRHPFDQPEAE
                     QELADGYHIEYSGMKFGLFFVGEYIGIVTISALMVTLFFGGWQGPLLPPFIWFALKTA
                     FFMMMFILIRASLPRPRYDQVMSFGWKICLPLTLINLLVTAAVILWQAQ"
     gene            complement(8781..11507)
                     /gene="nuoG"
                     /locus_tag="OQQ19_001996"
     CDS             complement(8781..11507)
                     /gene="nuoG"
                     /locus_tag="OQQ19_001996"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311194.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HCS1803632.1"
                     /translation="MATIHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGA
                     CRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHD
                     CPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRY
                     YKDYADGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEICPTGVFTDKTHSERYNRK
                     WDMQFAPSICQQCSIGCNISPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLK
                     DRPRQPVQRRGDDFITLNAEQAMQGAADILRQSKKVIGIGSPRASVESNFALRELVGE
                     ENFYTGIAHGEQERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVALA
                     VRQAVKGKAREMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLDDIAAWTYRAP
                     VEDQARLGFAIAHALDNSAPAVDGIEPELQSKIDVIVQALAGAKKPLIISGTNAGSLE
                     VIQAAANVAKALKGRGADVGITMIARSVNSMGLGIMGGGSLEEALTELETGRADAVVV
                     LENDLHRHASATRVNAALAKAPLVMVVDHQRTAIMENAHLVLSAASFAESDGTVINNE
                     GRAQRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLLSREVDWTQLDHVIDAVVAKIPE
                     LAGIKDAAPDATFRIRGQKLAREPHRYSGRTAMRANISVHEPRQPQDIDTMFTFSMEG
                     NNQPTAHRSQVPFAWAPGWNSPQAWNKFQDEVGGKLRFGDPGVRLFETSENGLDYFTS
                     VPARFQPQDGKWRIAPYYHLFGSDELSQRAPVFQSRMPQPYIKLNPADAAKLGVNAGT
                     RVSFSYDGNTVTLPVEIAEGLTAGQVGLPMGMSGIAPVLAGAHLEDLKEAQQ"
     gene            complement(11560..12897)
                     /gene="nuoF"
                     /locus_tag="OQQ19_001997"
     CDS             complement(11560..12897)
                     /gene="nuoF"
                     /locus_tag="OQQ19_001997"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HCS1803633.1"
                     /translation="MKNIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTG
                     LSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDR
                     LLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNI
                     MGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNN
                     VETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILED
                     YAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLGTALAMAVDHEIN
                     MVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLG
                     PGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLKERW"
     gene            complement(12894..13394)
                     /gene="nuoE"
                     /locus_tag="OQQ19_001998"
     CDS             complement(12894..13394)
                     /gene="nuoE"
                     /locus_tag="OQQ19_001998"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HCS1803634.1"
                     /translation="MHENQQPQTEAFELSAAEREAIEHEMHHYEDPRAASIEALKIVQ
                     KQRGWVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGY
                     QGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPE
                     LLERYK"
     gene            complement(13397..15199)
                     /gene="nuoC"
                     /locus_tag="OQQ19_001999"
     CDS             complement(13397..15199)
                     /gene="nuoC"
                     /locus_tag="OQQ19_001999"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C/D"
                     /protein_id="HCS1803635.1"
                     /translation="MVNNMTDLTAQEPAWQTRDHLDDPVIGELRNRFGPDAFTVQATR
                     TGVPVVWIKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHL
                     ISIDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMM
                     PQTWKGHPLRKDYPARATEFSPFELTKAKQDLEMEALTFKPEEWGMKRGTENEDFMFL
                     NLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIE
                     YLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMT
                     PVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLA
                     SYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENF
                     DFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERT
                     LQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSY
                     AHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR"
     gene            complement(15293..15955)
                     /gene="nuoB"
                     /locus_tag="OQQ19_002000"
     CDS             complement(15293..15955)
                     /gene="nuoB"
                     /locus_tag="OQQ19_002000"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoB"
                     /protein_id="HCS1803636.1"
                     /translation="MDYTLTRIDPNGENDRYPLQKQEIVTDPLEQEVNKNVFMGKLND
                     MVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTC
                     FTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPP
                     RPEAYMQALMLLQESIGKERRPLSWVVGDQGVYRANMQSERERKRGERIAVTNLRTPD
                     EI"
     gene            complement(15971..16414)
                     /gene="nuoA"
                     /locus_tag="OQQ19_002001"
     CDS             complement(15971..16414)
                     /gene="nuoA"
                     /locus_tag="OQQ19_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoA"
                     /protein_id="HCS1803637.1"
                     /translation="MSMSTSTEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARAR
                     SKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVE
                     AAIFIFVLLAGLVYLVRIGALDWTPARSRRERMNPETNSIANRQR"
     gene            complement(17045..17983)
                     /gene="lrhA"
                     /locus_tag="OQQ19_002002"
     CDS             complement(17045..17983)
                     /gene="lrhA"
                     /locus_tag="OQQ19_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LrhA"
                     /protein_id="HCS1803638.1"
                     /translation="MISANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQ
                     QMQRLEQLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFSNLQGVLT
                     IGASDESADTILPFLLNRVSSVYPKLALDVRVKRNAYMAEMLESQEVDLMVTTHRPSA
                     FKALNLRTSPTHWYCAAEYVLQKGEPIPLVLLDDPSPFRDMVLATLNKADIPWRLAYV
                     ASTLPAVRAAVKAGLGVTARPVEMMSPDLRVLSGVDGLPPLPDTEYLLCYDPSSNNEL
                     AQVIYQAMESYHNPWQYSPMSAPEGDDSLLIERDIE"
     gene            18902..20119
                     /gene="alaA"
                     /locus_tag="OQQ19_002003"
     CDS             18902..20119
                     /gene="alaA"
                     /locus_tag="OQQ19_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine transaminase AlaA"
                     /protein_id="HCS1803639.1"
                     /translation="MSPIEKSSKLENVCYDIRGPVLKEAKRLEEEGNKVLKLNIGNPA
                     PFGFDAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGN
                     GVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDD
                     IRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDA
                     EHHSIAPLAPDLLTITFNGLSKTYRVAGFRQGWMVLNGPKKHAKGYIEGLEMLASMRL
                     CANVPAQHAIQTALGGYQSISEFITPGGRLYEQRNRAWELINDIPGVSCVKPRGALYM
                     FPKIDAKRFNIHDDQKMVLDFLLQEKVLLVQGTAFNWPWPDHFRIVTLPRVDDIELSL
                     SKFARFLSGYHQL"
     gene            20203..20801
                     /gene="yfbR"
                     /locus_tag="OQQ19_002004"
                     /pseudo
     CDS             20203..20801
                     /gene="yfbR"
                     /locus_tag="OQQ19_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311202.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5'-deoxynucleotidase"
     gene            complement(20860..22692)
                     /locus_tag="OQQ19_002005"
     CDS             complement(20860..22692)
                     /locus_tag="OQQ19_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HCS1803640.1"
                     /translation="MNGELIWVLSLLAVAIVLFATGRVRMDAVALFVIVAFALSGTLT
                     VPEVFSGFSDPNVVLIAALFIIGDGLVRTGVATVMGTWLVKVAGNSEIKMLVLLMLTV
                     AGLGAFMSSTGVVAIFIPVVLSVAMRMQTSPSRLMMPLSFAGLISGMMTLVATPPNLV
                     VNSELLREGYHGFSFFSVTPVGLVVLVLGILYMLVMRFMLKGDTQTPQREGWTRRTFR
                     DLIREYRLTGRARRLAIRPGSPMIGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVN
                     GVSEFRARDVLLIDMSAADVDLRQFCSEQLLEPMVLRGEYFSDQALDVGMAEISLIPE
                     SELIGKSVREIGFRTRYGLNVVGLKRNGVALEGSLADEPLLLGDIILVVGNWKLIGML
                     AKQGRDFVALNLPEEVSEVSPAHSQAPHAIFCLVLMVALMLTDEIPNPVAAIIACLLM
                     GKFRCIDAESAYKSIHWPSIILIVGMMPFAVALQKTGGVALAVKGLMDIGGGYGPHMM
                     LGCLFVLSAVIGLFISNTATAVLMAPIALAAAKTMGVSPYPFAMVVAMAASAAFMTPV
                     SSPVNTLVLGPGNYSFSDFVKLGVPFTIIVMAVCVVMIPMLFPF"
BASE COUNT         5844 a         6275 c         5695 g         4953 t
ORIGIN      
        1 tgtatagatc taacaaccgt aataaaacaa atactcataa ctcattataa ataatgataa
       61 aataacgtct tttattgata atttatatat gggaaaaatt ccttttgtta tattgtttct
      121 gatttcactc cctctgatta tttttaccaa ccctgggtca ctgcattacc accaacgccc
      181 cgacacgtca gtcctgagca attagaaaaa acagttcgtt atcttacaca aactgtgcat
      241 ccacgtaatg ccgacaatat tgataatctg aataggtccg tagagtatat aaaagagttc
      301 tttgtcagta gcggtgccag agttaccgcg cagggcgtcc ccgattggct attacgactc
      361 tgcgcctggt agccaggatt acctttaccc gcaatgtcct ggctttatcc cgatcggggg
      421 gactttattg cctggtcggc agaatacagg atatcaacgc cgttcgtcag gtaaaaacgg
      481 cattgttatc atcccgggat ttatctgttt attctatgaa tgccccatgg tttattcccg
      541 gtattgattt ctctgaccac ctgaattatt ggcaacacga tattcccgcc gtaatgatta
      601 ctgacaccgc tttttatcgt aataaacaat accacttgcc cggtgataca gcagacagat
      661 tgaattatca gaaaatggct cagatggtgt tataaccttg ttacacaaca gtaaataata
      721 aaaatttctc gaggcgggtc cagaaacagc gacatgtaca ttttattttc cctcgtctgt
      781 tttaagatgc gaaacataaa attcaatgga ggaaaaataa atgggaatga ttggttattt
      841 tgcagaaatt gactcagaaa agattaacca atctgcttga gtctactgaa aaacctttga
      901 tggataatat acatgacacg ctttcaggat tacgccgact ggatattgat aaacgctggg
      961 attttttaca ctttgggctg acaggcaccc ctgcttttga tcccgcgaag aatgatccgc
     1021 tgagtcgtgc cgtgcttggt gaacacagcc tcgaagatgg catagatggc ttcctgggat
     1081 tgacctggaa tcaggaatta gccgcgacaa tcgaccgact ggaatcactg gatcgaagta
     1141 agctgcgtaa acagttttcc attaagcgac tatgaaatgg agatttatcc gggagtgacc
     1201 ttttcagaag agttagaggg gcaactcttt gcctcgatca tgcttgatat ggaaaagctg
     1261 attagcgcgt atcgacgtat gctgcgacaa gggaatcatg cgctgacggt tattgttggg
     1321 tgatggtgtc agagcgccaa aaaaaaccgc cgaacatgtc ggcggttttc tgacttacaa
     1381 actaacagat tacatcagcg gcattgctaa ccgcacaata ctaatcagcg attgtggcca
     1441 tacacccagc accagtacca acagtgcaga aatcagcacc acgataccgc ccgcgctgta
     1501 ctgccagttt gacggtgcat cgcgacccgg ttgttccggt gcgtgcaggt acaggctcac
     1561 cgccacgcgc aggtagtagt agaggccgat tgccgaaccg acaaccacgg cacccaccag
     1621 ccaccacaag tgtgcctgga caccgaccgc cagcacgtag aacttaccga taaagcccag
     1681 cgtcatcggg ataccggcca gagacagcat catcaccgtc atcactgccg cgaggatcgg
     1741 acgatgccag aacagaccgc ggtaagagaa cagggaatca gcatccgggc cacgatacgg
     1801 gctggacatc aggctgacca cgccgaacgc gccgaggctg ctgaacagat aaccggccag
     1861 gtaaacccct accgcttcca tcgacatctc gccggtttgc agcgcaatca gcgccaccag
     1921 cagatagccg aggtgagaga tagatgagta accgagcaga cgtttgatgt tggtctggct
     1981 caacgccatc aggttaccga agatgatgga ggcaaaggcg ataatcgcca gtactacgcg
     2041 aatcgcttcg ctgtcaccca ccggtgcata gaggaacaga cgcatcacca caccgaagat
     2101 agcgattttg ctcgccgtcg ccaggaaagt ggaaaccggc gcaggcgcgc cctggtatac
     2161 gtctggcgtc cacaggtgga acggcaccag agagagtttg aagccgaggc caacaatcat
     2221 catgccgaaa cctgccagca acagcggctc gttgagcata ccgtcgccga ggtttttacc
     2281 cagcgcgaca aacgacaggt cgccagactg cgcatacacc agcgccatac caaacagcag
     2341 gaaagaagac gctgcggcag aaaggatggt gtatttgata ctggcttcca gcgaacgttt
     2401 ctggcggaaa gcgtaaccga ccaggccaaa cagcggcaaa gagatcagtt caataccgag
     2461 gaacagagac gccagatggt ttgcattcgc cagcaggatc ccgcccagcg cggcaattaa
     2521 caccaacagg tagaactcat ccttgttgtc gttatagcct tcaagccacg ggtaggcgaa
     2581 agtacaggtg gcgaggctcg ccaacaatac cagcccggtg taaagcatgg cgaaaccatc
     2641 aacgcgcatc agcggcgtaa cgtccatagc gcccgcctgg ccaacaaacc agagcgaaac
     2701 cagcgccgcg ttaagcccaa taaccgagag cgtagcgttg aggaaatgat tgcgtcgcca
     2761 cgcaatggag agcatcacaa ccaccaccgt taagccgacg atcagcaacg gtagcagtgc
     2821 gatcaggttt tgtggagtta ttgtcatggc gatttacggc cttgtagtag taacggaatt
     2881 aacaaaccac tgctggatat tgccaatcgc ggagtgcgag gtatccagaa tcggctgcgg
     2941 atagaagccc agcagtacca gcagcaccac cagcaacagg atcataaaca gctcacgcag
     3001 cgacatccct ggcagttcct ggctggcaat ctggcttttc gctttaccga agtaagcgcg
     3061 atgcaacatc gccagcgaat aaacagatgc aaagaccagc ccaaaggtag agataacggt
     3121 aatcaccggg acaacctgga agctgccgaa cagaatcata aattcgccga cgaagttacc
     3181 ggtgccaggc atcccaagcg ttgccaccgc aaagaacagc gacaatgctg gcagccattt
     3241 catcttgctc cacagaccgc ccatcatgcg catgtcgcgg gtatggatac gttcataaag
     3301 ctgaccacaa agaataaaca gacccgccgc cgacaaaccg tgcgcaatca tctggattac
     3361 cgcgccctgg taggccaact ggctgccggt gtagatagca atcagcacga agcccatgtg
     3421 ggaaaccgag gtgtaggcga tcagacgttt gatatcggtc tgggcgaagg ccatccacgc
     3481 accgtagaag atgccgataa cacccagcca catagcaatt ggcgcgaact ctgccgacgc
     3541 gttcgggaac agcggcaggg agaaacgcag caaaccgtaa gcggcagttt tcagcaagat
     3601 ccccgcgaga tcaacggaac cggcggtcgg agcctgggag tgcgcatccg gcagccagcc
     3661 atgcagcgga accaccggca ttttgactgc gaaggcgatg aagaagccca gcattaacag
     3721 gtattccaca ccactggaca ttggcgtatt cagcagctct tcatagttga aggtccagac
     3781 gccggtcgca ttgtagtgaa caaaaaccag cgccaggatg gcaatcaaca tcaccaggcc
     3841 actcgcctgg gtgtaaatga agaacttggt tgccgccgtg atacgcgttt taccgtcaga
     3901 ggctttatgc ccccacagtg cgatcaggaa gtacatcggc accagcatca tttcccagaa
     3961 gaagaagaac aggaacatgt cgatggcaag gaacacgccg ataacgccgc ccaggatcca
     4021 catcaggttg aggtggaaga agccctgata tttttcgatc tctttccacg aacagagtac
     4081 cgccagcaca ccgagcagac cggtcagcac gaccatcagc agcgacagac cgtcaatggc
     4141 gagatgaata gagataccaa aacgcgggat ccacggcatg tcgaattcag actgccactg
     4201 cggaattccg gcggattgcg tcagtgaata accgccctgc aaccacagtt gcagcgacag
     4261 cgccagcgtc aatcccatgg tgatcagcgc gatccagcgt ggcaccttga cgtcaaagtg
     4321 ttcggtctgc cagcacagga agccgccaat aaagggaatt aatattagcc agggtagtaa
     4381 catggcgatc tttattcctt gtaaaagtcc cgtcaggacc ggattttcaa cgaattctca
     4441 cgacagaaaa ttctcttcgg actgggggta gtgtcggatg cgccgcgaag gcagcttatc
     4501 cgacctacgt tcttatatgc ccaggggcaa tcccacaatc cttaactcaa cgcagtacca
     4561 tcaacagtgc cagcaccacg accgcaccga tgctcatgga tgccacatac cagcgcagat
     4621 aaccgttctc gcttaacagc aggcctttac ctgcaaagcg ggaaagaacc gccggaatgt
     4681 tcatcattga gttcagcgga tcgcgtttca gcaaccaggc aatacccaga aacggcttga
     4741 cgaacacttt gtcgtacagc cagtcaaagc cccaggcgtt gtaccaccag gtgcccagca
     4801 gacggcccgg cgcactgttg gcaatggagg tcaccagagt acgtttaccc tgccacagcc
     4861 aggctgccag cagaatgccg accaccgcga ccacgccaga ggtaatttcc agggtcaaca
     4921 tgctgccgtg cgccagttcc gtcgtttgcg gaagcacgct ctgcagcggc ggtacaatca
     4981 gtgcgccaac gaaggtggaa aggatcagca gcacaatcag cggcaggctg tgagttaccc
     5041 ctttcacggc gtgagcgtga atttgttctt ttccgtggaa gacgatgaaa atcatacgga
     5101 aggtgtagag cgaggtcata aacgcaccga ccagacctgc caccatcaga ttgatatgac
     5161 cattcgccat cgcacccgcg aggatctcat ccttactgaa gaagcccgca gtgaccagcg
     5221 gtagtgccga cagtgctgcg ccgcccacca ggaagcagaa ataaaccagc ggaatagatt
     5281 tacgcagacc gcccatcttg aagatgttct gttcgtgatg gcaggccaga atgacggaac
     5341 cggatgccag gaacagcagc gctttaaaga acgcgtgagt catcaagtgg aaaatcgccg
     5401 catcccatgc ctgcacgcca agcgcgagga acatgtagcc aatctggctc atggtagagt
     5461 aagcgagaac acgtttgatg tcggtctgta ccagcgcggc aaaaccggcc agcagcagcg
     5521 taaccgcccc gacaatgccc accagatgca gaatttccgg cgtcatcagg aacaggccgt
     5581 gggtacgggc gatcaggtag acacccgcgg ttaccatggt tgcggcgtgg atcagcgcgg
     5641 agacaggcgt cgggcccgcc atcgcgtcgg caagccatgt ctgcaacggc aactgcgcag
     5701 atttaccgac cgcaccgccc agcagcatca gcgtcgccca catcagcatg ttattgccgt
     5761 cagcaaagtg cgctggtgcc agttccacca tttcgcggaa gttcagggtg cccagttcgt
     5821 tgtaaagaat gaacagcgcg aaagcgagga acacgtcacc cacacgggtc acgacgaacg
     5881 ctttcattgc cgctgcgcca ttcttcggat cggtgtaata gaacccgatc agcagatagg
     5941 agcacaggcc cacgccttcc cagccgaggt acatcagcag caggttatcg gcgagaacca
     6001 gaactaccat gctggcgatg aacaggttgg tgtaggcgaa gaagcgagag tagccctctt
     6061 caccgcgcat gtaccaggag gcgtacatgt gaataaggaa acccacacca gtgaccaccg
     6121 agagcatggt cagcgacagg ccgtccagca ccaggttaaa accgatgtta aagtcgccta
     6181 ccgacatcca cgtccacagc ggctggctgt atgcctgctc gccgttagcg aagaaatcaa
     6241 cgccgataaa ggcggttacc agcgccgcca ggcccacaga gccaacgccg acgatcgccg
     6301 aaacgttttc agaccagcgc ccacgggaga acgccagcag gacgaagcca atcaatggca
     6361 aaataatggt taaggcaagc atgttcatcc gcgcatctca cttactgaat cgatgttcag
     6421 gttctggcga cgacggtgaa gttgcagcag cagcgcaagg ccgatactcg cttctgccgc
     6481 cgcgaggctg atggcgagaa tgtacatcac ctgaccgtcg gtctgacccc agtagcttcc
     6541 ggcgaccaca aaggccagcg cggaggcgtt aatcatgatt tccagaccaa tcagcataaa
     6601 cagcagattg cgacggataa ccagaccggt taagccaaga acgaataaga ttgccgagag
     6661 gatcagtcca tgttgtaagg ggatcatgcg tgctcctccg tttttctttt cgcgctgtcg
     6721 tctttacgat tgctcagcac ttcacccgca cgctcttcac gaccgacgtg gaaggccaca
     6781 accagacccg cgagcagcag catagaagcc agttccaccg ccagtacgta aggcccgaac
     6841 agcgtaatac ccactgcttt agcactgatt ggcgtaccgt cgataccctg atcattaaca
     6901 ccaaggatgg cgtaaacaat caccaccagc atgatggccg acaaaattgc cggaccaatc
     6961 cacacctgcg gtttcagcca ctggcgttcc tgttcgattt ctgaaccgcc caggttgagc
     7021 atcatcacca cgaacacgaa cagcaccata atggcacccg cgtagacgat aatttccagc
     7081 gcaccggcga agtaagcgcc cagtgagaag aacaccccgg aaatcgccag cagcgaaata
     7141 atcaggtaca gcagtgcgtg taccggattg gtatgggtga tcactcgcaa ggtcgcaagt
     7201 atggctatca ggccacagat ataaaaagcg aactccattg cccctctcct tacggtaaca
     7261 ggctcttgac gtcgataggc ttggcttcgt tctctgcttc gcccttatct ttgccgtcga
     7321 ttgccatacc tgccatccgg tagaagttat attccgggta tttgcccgga ccggagatca
     7381 gcagatcctc tttttcgtaa accagatcct ggcgcttgta ttcccccatt tcgaaatccg
     7441 gggttaactg aatcgccgtg gtcggacagg cttcttcgca cagaccacag aaaatgcagc
     7501 gtgagaagtt gatgcggaaa aattccgggt accagcgacc gtctttggtt tctgcttttt
     7561 gcagcgagat acagccgacc gggcaggcta ccgcgcagag gttacaggct acgcaacgct
     7621 cttcgccgtc cgggtcgcgg gtcagaacga tacgaccacg ataacggggc ggcagataga
     7681 ccggctcttc cgggtacatt cgcgtttcgc gtttggcgaa cgcgtgcagg ccgatcatcc
     7741 agatactacg aacctgggtg ccgaaaccta ctaacaattc ttttaaggtc atggtcttat
     7801 tgccccttat tgcgcctgcc agagaatgac agccgccgtt accagcaagt tgatcagcgt
     7861 cagcggcagg cagattttcc agccgaagga cattacctgg tcataacgcg gacgcggtaa
     7921 cgacgcacga atcaaaatga acatcatcat aaagaacgcg gttttcaacg cgaaccagat
     7981 gaatggcggt aacaacgggc cttgccagcc accgaagaac agcgtcacca tcaatgcaga
     8041 gatggtcaca atcccgatgt actcacccac gaagaacaga ccgaacttca taccggaata
     8101 ttcaatgtgg taaccatccg ccagttcctg ctcggcttcc ggctggtcaa acgggtgacg
     8161 gtgacatacc gccacgcccg cgatggcaaa ggtaataaaa ccaaagaatt gcgggataac
     8221 gttccacaca tgcgcctggc tgttgacgat gtcggtcatg ttgaatgaac cggcctgcgc
     8281 caccacgccc atcagggaaa gcccgaggaa cacttcgtag ctcagggtct gcgcagaagc
     8341 acgcatcgca cccagcaacg agtatttgtt gttacttgac cagcccgcaa acagcaccgc
     8401 gtaaaccgcc agacctgcca tcatcaggaa gaacaaaatc ccgatgttca ggtcggcaac
     8461 cacccaaccc ggactgactg gcacaatcgc aaaggccagc agcagcgagg taaaggcaat
     8521 catcggtgcc agggtaaaga tgacgcgatc cgagaatttc gggatccagt cttctttaaa
     8581 gaacattttg atcatgtccg caaccagctg gagcgaaccg ccccagccaa cacggttagg
     8641 tccataacgg ttctggaaca gacccagcag gcgacgttcg ccaaagctca tgaatgcccc
     8701 acaggtgaca accaccagca ggatcaccac cgctttgagg atggtcagca ggatctcaat
     8761 cagttccggt gatatccaac tcattgttgt gcctccttga gatcctcaag atgcgcgcca
     8821 gccagcaccg gagcaatgcc ggacataccc atcggcaagc ccacctgccc tgccgtcagt
     8881 ccttcggcga tttcaaccgg cagcgtgacc gtgttgccat cgtaactaaa ggagacgcgt
     8941 gtacctgcgt tcacacccaa cttcgcggca tccgctgggt tgagtttgat gtacggctgc
     9001 ggcatacggc tctggaagac cggagcacgc tgtgacaatt catcgctgcc aaacaggtgg
     9061 taatacggcg caatacgcca tttcccgtcc tgcggctgga agcgtgccgg tacgctggtg
     9121 aagtaatcca gaccattctc gctggtttca aacagacgca cgcccggatc gccaaagcgc
     9181 agtttgccgc ccacttcgtc ctggaatttg ttccacgcct gcggggagtt ccagcccggt
     9241 gcccaggcaa acggcacttg cgaacggtgc gcggtcggct ggttgttacc ttccatcgag
     9301 aaggtgaaca tggtgtcaat atcctgcggc tgacgcggct catgaacgct gatattggcg
     9361 cgcatggcgg tacgaccgct gtaacggtgc ggttcacggg ccagtttctg cccacgaata
     9421 cggaatgtcg catccggcgc agcatctttg atacctgcca gttccgggat tttcgccaca
     9481 acagcgtcaa tcacatggtc gagctgcgtc cagtccactt cacggctcag cagggtgctg
     9541 tgcagcgagt gcagccagcg ccagctttcc agcatgacag ttttgctgtc gtaataagcc
     9601 ggatcgtaaa cctggaagaa acgttgggcg cgaccttcat tattaattac cgtaccgtcg
     9661 ctttcagcaa agctggcggc ggaaagtacc agatgggcgt tttccatgat cgctgtacgc
     9721 tgatggtcaa ccaccatcac cagcggtgct ttagccagcg cagcattcac gcgggtagca
     9781 gaagcgtgac gatgcagatc gttttccaac accaccaccg cgtcggcgcg tccggtttcc
     9841 agttcggtta acgcttcttc aagcgaaccg ccacccataa tgcccagccc catgctgttg
     9901 acggaacggg caatcatggt gataccgacg tcagcgccgc gacctttcag ggctttcgcg
     9961 acgttagccg ccgcctgaat cacctctaag ctaccggcgt tcgtcccgga gataatcaac
    10021 ggtttcttcg cacctgccag tgcctgcacg atgacgtcga ttttgctttg cagctcaggt
    10081 tcgataccgt caaccgctgg tgcagagtta tccagcgcat gggcgatggc aaaacctaaa
    10141 cgcgcctgat cttcaaccgg tgcgcggtaa gtccacgccg cgatatcatc caaacgggtg
    10201 tcatcaacgt tggtaacaaa cagcggatgc ttcgcacgtt gaccgatgtt aaggattgcc
    10261 gcaatctgcc agtcagccac tttctgtgct gccgccattt cgcgcgcttt acctttcacc
    10321 gcctgacgca ctgccagcgc gacgcgcgcg ccggtctggg taacgtcttc gcccagcacc
    10381 agtaccgcat cgtaagattc gatttcgcgc agagccggag tataaatgcc gccttcacgc
    10441 agcactttca gcgccagttg cagacgttcc tgctcaccgt gagcgatacc ggtgtagaag
    10501 ttttcttcgc ccaccagttc acgcagtgca aagttgcttt ccacgctggc acgcggagaa
    10561 ccaataccga tcactttctt cgactgacgc agaatatctg ccgcgccctg cattgcctgt
    10621 tcggcgttga gggtaatgaa atcatcgcca cgacgctgta ctggctgacg cggacgatcc
    10681 ttcaggttga cgtaaccgta accgaaacga ccacggtcgc agaggaagta gtggtttacc
    10741 gtaccgttgt aacggttttc gatacgacgc agttcgccgt aacgttcacc ggggctgatg
    10801 ttacagccga tggaacattg ctggcagatg ctcggcgcaa actgcatatc ccatttacgg
    10861 ttgtaacgct cggagtgcgt tttgtcggta aatacgccgg tcgggcaaat ttcgaccagg
    10921 ttaccggaaa attcgctttc cagcgtgccg tcttccgggc gaccgaagta gacgttgtcg
    10981 tgcgcgccat aaacgcccag atctgtaccg tcagcgtaat ctttgtagta acgcacacag
    11041 cggtagcagg cgatgcagcg gttcatttcg tgagatatga atggccccaa atcctgatta
    11101 cggtgggtac gtttggtgaa acggtagcga cggaagctgt gtccggtcat cacggtcata
    11161 tcctgaagat ggcagttacc gccttcttca cataccggac agtcgtgcgg gtggttggtc
    11221 attaaccact cgaccacact ttcacggaac tgtttcgctt cttcgtcgtc aatggaaata
    11281 aaggtgccat cggaagccgg tgtcatacag gacatcacca ggcgaccacg cgtgtcttcc
    11341 gcgttttggt attgcttcac cgcacactgg cggcaagcac cgacgcttcc cagcgccgga
    11401 tgccagcaaa agtaaggaat atcaaggccc agagacagac aagcttccag caggttgtcc
    11461 gctccgttga cctcgtattc tttgccgtct acatgaattg tagccattag catgcttcca
    11521 gttttctcgg tcagggaccg agcgttaatc gaaattcggt taccagcgct ctttcagcag
    11581 gttcggctga atcccattaa tcaaatgggt attgctgaac ggctgtttga ttcccgcctc
    11641 aaattcttcg cggaaatatt tgatggcgct ctgtaacggc tccactgcac caggtgcgtg
    11701 ggcacagaaa gttttacccg ggcctaagaa tcgacacagt tgctcaagtg tttcaatatc
    11761 gcccggctgg ccttcgccac gctccagcgc acgcagaatt ttcacgctcc acggcagacc
    11821 gtcgcggcac ggcgtacacc agccgcagga ctcacgggcg aaaaactctt ccaggttacg
    11881 caccagcgac accatgttga tctcatggtc aaccgccatc gccagcgccg tacccagacg
    11941 gctgcccgct ttaccgatac tttcgaattc catcggcaga tcaaggtgcg cttcggtcag
    12001 gaagtcagtc cccgcgccgc ctggctgcca ggctttaaat ttcagaccat cacgcatacc
    12061 accggcgtaa tcttcgagga tctcgcgtgc ggtggtgccg aacggcagtt cccacagtcc
    12121 cggatttttc acccgaccgg agaagcccat cagcttggtg ccagcatctt tacttttcga
    12181 gatgttctga taccactcca cgccgttagc gaggatcgcc ggaacgttac acagggtttc
    12241 gacgttgttg acacaggtcg gtttgcccca tacgccggag gttgccggga aggggggttt
    12301 cgagcgtggg ttagcacgac gcccttctag ggagttgatt aacgctgttt cttccccgca
    12361 gatgtagcgc cctgccccgg tatggacgaa cagttcgaag tcgaaacctg ttcccataat
    12421 gtttttgcca agcaagcccg cttcagtggc ttcggcaatg gcgcggcgca gatttactgc
    12481 cgcttcgata tattcgccac gcaggaagat gtagccacgg taagctttca gcgcaaacgc
    12541 ggagatgagc ataccttcca ccagcaggtg cggcagttgc tccatcaaca ggcggtcttt
    12601 ataggtgccc ggctccattt catcggcgtt acacagcagg taacggatgt tcatggattc
    12661 gtctttcggc atcaggctcc acttcaggcc agtagaaaag cccgctccgc cgcgcccttt
    12721 cagaccagcg tcttttacct gattaacgat ttcgtccgga gacagcccgg tcagcgcctt
    12781 acgcgcccct tcgtaaccgt ttttgctgcg gtattcgtcc agccacactg gctgtttgtc
    12841 atcgcgcaga cgccaggtca gcggatgcgt ttcgggagta cggataatgt ttttcattta
    12901 taccgctcca gcagttcagg gatcgcttcc ggggtcagat gcgcgtgagt gtcctcatcg
    12961 atcatcatgt ttggcccttt atcacagttc cccaggcagc aagttggcag cagcgtaaag
    13021 cggccatcaa atgtcgtttg ccctggtttg atgttcagct ttttctcgag cgccgcctga
    13081 ataccctgat acccgttgat atgacagacc acgctgtcgc aataacggat cacatggcga
    13141 ccaaccggct ggcggaagat ctgactgtag aacgttgcca caccttcgac gtcgcttgcc
    13201 ggaataccca gcacatcggc gatcgcgtgg atcgcaccat ccggcaccca gccacgctgc
    13261 ttctgaacga ttttcagcgc ttcaatggac gccgcacgcg ggtcttcgta gtggtgcatc
    13321 tcgtgctcaa tcgcttcacg ctctgccgca ctcagctcaa aagcctcggt ttgtggttgt
    13381 tgattctcgt gcataattag cggtccacat ctgacataac aaaatcgata ctgcccagat
    13441 aaacaatcag gtcagacacc aggctgccgc ggatcgccgc cggaatttgc tgcaaatgcg
    13501 cataactcgg cgtgcggata cgagtgcgat aactcatggt gctaccgtcg ctggtcaggt
    13561 agtaactgtt gatccccttg gtcgcctcaa tcatctggaa agattcattg gcaggcatca
    13621 ccggccccca cgacacttgc aggaagtggg tgatcagggt ttcgatatgt tgcagcgtgc
    13681 gctctttcgg cggcggcgtg gtcagcgggt gatccgcttt gaacgggcct tccggcatgt
    13741 tgttgaggca ctgctcaaga atgcgcagac tctggcgcag ctcttccact ttcagcatta
    13801 cgcgggtgta gcagtcagaa acaccaccac caaccgggat ttcaaagtcg aagttttcat
    13861 agccagaata aggacgcgcc ttacgcacgt cgaagtcgat cccggtagca cgcaggcccg
    13921 cgccagtggt gccccactcc agcgcctctt tcgcgccata ggcggcaacg ccctgggaac
    13981 gacctttcag aatggtattt tgcagcgccg ctttctcgta agacgccaga cgtttcggca
    14041 tccagtcgag gaactcacgc agcaggcgat cccagccgcg cggcaggtcg tgcgctacgc
    14101 cgccaatacg gaaccacgcc gggtgcatac ggaaacccgt gatcgcttcc accagatcgt
    14161 aaattttctg acgatcggta aaggcgaaga acacgggcgt cattgcgccg acgtcctgaa
    14221 taaaggtcga gatgtacagc aggtggctgt tgatacggaa cagttcggag agcataacgc
    14281 gaatgacgtt aacgcgatcc ggcacggtga tcccggccag tttctctacc gccagcacgt
    14341 aaggcatttc gttaacgcag ccgccgaggt attcaatacg gtcggtatac ggaatgtagc
    14401 tgtgccagga ctggcgctcg cccattttct ccgcaccacg gtggtggtag ccgatgtctg
    14461 gtacgcagtc gacaatctct tcgccgtcga gttgtaaaac gatacggaaa gccccgtgcg
    14521 ccgacgggtg gttcggaccg aggttgagga acatgaagtc ctcgttttcg gtgccgcgct
    14581 tcatccccca ctcttccggt ttgaaggtca gggcttccat ctccagatcc tgtttggctt
    14641 tggtcagctc aaacggcgag aattcggtag cgcgcgccgg gtaatcttta cgcagcgggt
    14701 gacctttcca ggtttgcggc atcatgatgc ggcgcaggtt cgggtgaccg tcgaaagtaa
    14761 tgccaaacag atcccaggtt tcacgctcat accagttagc gttcgggaac agtttggtga
    14821 aggtcggtac gtgcaggtcg ttttctgcca gcgccacctt cagcatgatg tcgcggttac
    14881 gatcgataga aatcagatgg tagaaaacgg aaaaatccgc ggcaggtaac ccttcgcggt
    14941 gtgtgcgcag acgttcgtcc atgccgtgta agtcaaacag catgacgtaa ggtttcggca
    15001 gtttctttaa gaaatcgcca acttccagta attgttcacg cttgatccac acaacgggaa
    15061 ccccggtgcg agtcgcctga acagtaaagg catccggccc aaaacggttg cgcagttcgc
    15121 caattaccgg atcatcaaga tgatcgcggg tctgccaggc gggttcttgc gcggttaagt
    15181 cggtcatatt gttcaccatt gcaaatggtc cgtggtgact gtcggcgcag taagcttcgc
    15241 gaaatagatt taggaataag cgaagaaaaa tccctttgcc gacaggcgca aattaaatct
    15301 cgtcaggtgt acgcaggttg gttacggcaa tgcgttcacc gcgcttgcgt tcgcgctctg
    15361 attgcatatt ggcgcgataa acgccctgat cgccaaccac ccaggagagc ggacgacgtt
    15421 ctttgccgat agattcctgc aacagcatca gtgcctgcat gtacgcttca ggacgcggcg
    15481 ggcagcccgg gatatacaca tcaaccggga tgaatttatc gacgccctgc acaacggaat
    15541 aaatatcgta cataccacca gagttggcac aggcacccat tgagataacc cattttggtt
    15601 ccagcatctg gtcatacaga cgctgaataa ccggtgccat tttggtaaag caggttcctg
    15661 caaccaccat caggtcagcc tgacgcggcg aagcacgcaa tacttctgcg ccaaaacgcg
    15721 ccacgtcatg caccgcggta aacgaagtca ccatctcaac gtaacagcag gaaagaccga
    15781 agttatacgg ccaaattgag tttttacgac cccagttaac catgtcattg agcttgccca
    15841 taaacacgtt tttgttaact tcttgctcca gagggtcggt tacgatctcc tgcttttgca
    15901 gggggtaacg gtcgttctca ccgttgggat ctatgcgggt gagcgtataa tccatcttaa
    15961 tgcctcgcgg ttagcgttga cgattagcga tactgttcgt ttccgggttc atacgctcgc
    16021 ggcgtgaacg cgcgggcgtc cagtccagcg cgccaatacg caccagataa accagacctg
    16081 ccagtaacac aaaaataaaa attgcagctt ccacaaagcc tacccagccg ctttcgcgga
    16141 tagaggttga ccatgcgaac agatacagcg cttcaacgtc gaagataacg aagaacatgg
    16201 ccaccagata aaacttggcg gacaggcgta agcgggcgga gccgaccgag tcgataccgg
    16261 attcaaacgg cacgtttttc gacctcgcgc gtgcgcgacc gcctaaaaac caaccaccta
    16321 ccagcattag gcaacacagg ccaatggcaa cgataagaaa gatagcgaat gcccagtgat
    16381 gagcgatgac ttcagtggat gttgacatac tcattgctta ctcatcaaaa gtagcgccag
    16441 attcactgct cttcacggca gatggacgcc acatcgattc atggggagga ataaaaaaaa
    16501 ccttacaatc actgtagaaa ttcttttata cagctaattg atgtggtctt ttactccttt
    16561 ctataacctt ttgtcaactt taacaaaagt ttcttcacat tagtttacat aatatcaaca
    16621 ccattagcat ttaatgccct ttcaccccag atccttgacg actccaggat aattagatgt
    16681 tgttgaatcg tgtccgttgt gaagcaatgg aaaaaatacg ggtctatttt gacaggaatt
    16741 tgtgtcgatt cctcccccca aaagagagta ttttcttgat ctgtgacacg cttttgtcat
    16801 tccataacaa aaacgcagca acaaatttac gtatttttta acatcattgt agcaggtgat
    16861 ttttttcagg cgattatttg tgcgttcggg acgtgaatct ctggtgattg aaaaatgaac
    16921 agttttgtac gttctgcact atgcgaggaa ggatttttac taaaaaaaag ccgctggggt
    16981 ttaaaacacc cccagcggct cgttttttac actattgtct caggaattat ctatcgtccg
    17041 tcgattactc gatatccctt tcaatcaaca atgaatcatc cccttccgga gcagacattg
    17101 ggctgtattg ccacggatta tggtagctct ccatcgcctg atagatcacc tgggccagct
    17161 cattattact ggacgggtca tagcacagca aatattcggt atcaggtagc ggcggtaagc
    17221 catctactcc actcagcaca cgcaggtccg ggctcatcat ctcaaccggc cttgccgtca
    17281 cgccaagacc ggctttcact gccgcacgaa cggccggaag cgtcgaggcg acataagcca
    17341 gtcgccatgg aatatctgct ttattaagcg ttgccagcac catatcgcga aacggacttg
    17401 gatcatccag caatacaaga gggatcggct cgcctttttg caatacgtat tccgctgcgc
    17461 agtaccagtg tgttggcgag gtacgcaggt tcaatgcctt aaacgctgaa ggacgatggg
    17521 tggttaccat caaatccact tcctgggatt ccagcatttc tgccatatag gcattacgtt
    17581 taacgcggac atccagcgct aatttcggat aaaccgaact cacgcgattt aacaggaaag
    17641 gtaagatcgt atcggcagat tcatctgaag caccgatagt taacacgccc tgaagattac
    17701 tgaacattaa tgatgagcag gcctcatcat taaaacgcag gattttcctg gcgtaaccaa
    17761 gaagttgaat gccatgttca gttaacagtt tgttgcgacc gtgacgagcg aacagttctt
    17821 tcccaacgag ttgttccaga cgctgcattt gctgacttac ggcggactga gtacgacaca
    17881 cagcggcagc tgcggcagca aaagtgttca gatcggcaac agcaacaaat gttctcagca
    17941 gatcgaggtc gaggttaatt atcggacgat ttgcacttat catatattat cacttactgg
    18001 cggctcatac tgagctggtt aatgctgtgc acacacaaac aagcaattcc atttgtaatg
    18061 tgcctccctg gcagtttcat ccggaacccg gacgaaagta aaaatgcata tgagttgcac
    18121 taaaaaagcg actcacattg ttccgttata atgcctgaag tagatcacag aatatatctt
    18181 cagggatcgc atatctatta agttactcac tcttttctat ttatgacatg cgcgtgtttg
    18241 tataaatgta aatgtgagtc cttgttccac tctcgtgcag catcgctggt catacgcgaa
    18301 cacgtacaaa cagcaatggt gaggcggcat caagagcagg gatccgtcat ttatgcgagc
    18361 attttacccc aaaaaccttt tatttataag ggccattgcg aatcatctga tgcaaagtta
    18421 tgttatgtta ggcaaagtaa tcttctatta ttaataagca catcaaaacc tttttgaata
    18481 ttaaataata attaattagc atcatcctca ttcattaatt ccgcttaaca atagtttcac
    18541 accttgcccc attacgacac ctcggaaatc atcacgctgt taaactctcc gtaatgcgga
    18601 aatatcatca tcgcgtttca ttagtgaatt cttaaatgag gcattttcac acaattatct
    18661 tacagataaa aaaaccagac ttacaattaa gaatcagaac aattcactat ataacattgc
    18721 atgtaaagca tatacacctc attattttgt catcattaag ttattaacag cacaatcgag
    18781 ccttcccctc tggcaaaatc ttattctgca gaccttcaaa acaccgtcct gggggagtac
    18841 attgttctaa gctgacttcc acggcaggga gtggcgataa cagcaaaaaa ggtcaagatt
    18901 catgtccccc attgaaaaat ccagcaaatt agagaatgtc tgttatgaca tccgtggtcc
    18961 ggtgctgaaa gaagcaaaac gcctggaaga agaaggtaac aaggtactga aactgaacat
    19021 cggcaaccca gccccgttcg gttttgacgc gccagatgaa atcctcgttg acgtgatacg
    19081 caacctgcct accgctcaag ggtattgcga ttccaaaggt ctttactccg cgcgtaaagc
    19141 catcatgcag cactaccagg ctcgtggcat gcgtgatgtt accgtggaag atatttacat
    19201 cggcaatggt gtatcggagc ttatcgttca ggcaatgcag gcattgctga acagcgggga
    19261 cgaaatgttg gttcctgcac cagattaccc actatggacc gcggcggttt cgctttccag
    19321 cggtaaagcg gtgcattatc tttgcgatga atcctctgac tggttcccgg acctcgatga
    19381 tattcgcgct aaaattacgc ctcgtacgcg tgggatcgtt attatcaacc caaataaccc
    19441 aaccggcgcg gtatattcca aagagctttt aatggagatt gtggagattg cacgtcagca
    19501 taatctcatt atcttcgccg atgaaattta tgacaaaatt ctttacgacg acgctgagca
    19561 tcactcaatt gcgccgctgg cacctgacct gctgaccatt acctttaacg gactgtcgaa
    19621 aacgtaccgc gttgcaggct tccgtcaggg gtggatggtg ttgaacgggc cgaaaaaaca
    19681 cgccaaaggc tacatcgaag gtctggaaat gctggcttca atgcgcctgt gtgctaacgt
    19741 tcctgcgcaa cacgccattc agaccgcgct gggtggttat cagagcatca gtgaatttat
    19801 tacccctggc ggtcgtcttt atgagcagcg taaccgcgcg tgggaactga tcaacgatat
    19861 tccgggcgtt tcctgcgtga aacctcgtgg tgcgctgtat atgttcccga aaatcgacgc
    19921 caaacgcttt aacattcacg acgatcagaa aatggtgctg gatttcctgt tgcaggaaaa
    19981 agttctgttg gtgcaaggga cggcattcaa ctggccgtgg ccggatcact tccgcattgt
    20041 cacgctaccg cgtgtcgatg atatcgagct gtctttgagc aagttcgcgc gtttcctttc
    20101 tggttatcat cagctgtaat cttaatttca ctgccggaga ttgcatccgg cagcgttatc
    20161 ccgccacaat gacctgatga tgtcatcata cgtaaggtca ctatgaaaca gagccatttt
    20221 tttgcccatc tctcccgcct gaaactcatt aaccgctggc cgctaatgcg caacgtgctg
    20281 acggaaaatg tgtccgaaca cagtttgcag gtagcgatgg tcgcccattc gctggcagct
    20341 atcaaaaatc gaaaatttgg cggtaatgtc aacgccgaac gtatcgcttt actggcgatg
    20401 taccacgatg cctcagaagt gccaccggcg atctccctac tccggtgaaa tacttcaatt
    20461 cgcaaatcgc tcaggagtac aaggctattg aaaaaatcgc tcagcaaaaa ctggtcgata
    20521 tggttccgga agagctgcgg gatatctttg cgccgttaat tgacgagcat gcatatagcg
    20581 atgaagaaaa atcgctggtg aaacaggcag atgcactgtg tgcatatctg aaatgtctgg
    20641 aagaactcgc ggccggaaat aatgaattct tgctggcaaa aacgcgactg gaagcgacgc
    20701 ttgaagcgcg tcgcagccag gagatggact acttcatgga agtatttgtt cccagcttcc
    20761 atctttcgct cgatgagatt agccaggatt caccgctgta agcagccgga gtctgcgtcg
    20821 catcaggcaa taagcgccgg atgcgacatc aggctcttgt caaaacggaa acagcatcgg
    20881 gatcatcacc acacaaaccg ccatcacgat aatggtgaac ggtaccccca acttcacaaa
    20941 gtcactgaag ctgtaatttc ccggacctaa aaccagtgtg ttaacaggtg aagaaaccgg
    21001 tgtcataaag gcggcggatg ctgccatcgc cacgaccatc gcgaatggat aaggcgacac
    21061 ccccatcgtt ttggcagcag ccagcgcaat cggagccatc aacaccgccg tcgcggtatt
    21121 agagataaat agcccaataa ccgccgacaa gacaaacaaa caccccagca tcatatgtgg
    21181 cccgtaacca ccgccaatgt ccatcagccc tttcaccgcc agcgcgacac ctcccgtttt
    21241 ctgtaatgcc acagcaaacg gcatcatccc aacgatcaaa ataatgctcg gccagtgaat
    21301 ggatttatag gcgctttcag catctataca gcggaatttc cccatcagca ggcaggcgat
    21361 gatagcggca acaggattag gaatttcatc tgtcagcatt aacgccacca ttagcaccag
    21421 acagaaaatg gcatggggtg cctggctgtg cgcgggcgat acttcactca cctcttccgg
    21481 taagttcagc gctacgaagt cgcggccctg tttggccagc ataccgatca gtttccagtt
    21541 acccacaacc aggatgatat cgcccagcag cagaggctca tccgccagcg aaccttccag
    21601 cgccacgcca ttgcgcttta gccccaccac attcagtccg tagcgggtac gaaaaccaat
    21661 ttcgcgcacc gatttaccaa tcagttctga ctcaggaatt aatgaaatct ctgccatgcc
    21721 cacatcaagg gcctggtcag aaaaatactc gccgcgcagt accatcggct ccagcaattg
    21781 ctcactacaa aattgccgga gatcgacatc agccgcagac atatcaataa gcaaaacgtc
    21841 acgcgcgcga aattcagaaa ccccattaac gttcacgata acgcgacgaa aacgccgcca
    21901 gcgttcaaca ccgatgacgt tagcgccata acgctcacgt aatttgagat catccagccg
    21961 ttgaccaatc attggcgatc cggggcgaat agccagacgt cgcgcacgcc cggtcagtcg
    22021 atattcacgg ataagatcgc gaaaggttcg acgcgtccag ccttcgcgct gcggggtctg
    22081 ggtatcccct ttcagcatga aacgcatcac taacatatac aaaataccca gcaccagcac
    22141 gaccaggcca acaggtgtta cgctaaagaa actgaagccg tgatagcctt cacgcagcaa
    22201 ttcactgttg actaccaggt tcggcggcgt cgccaccagc gtcatcatgc cgctaatcag
    22261 cccggcaaaa cttaacggca tcatcagacg tgacggcgaa gtttgcatac gcatggcaac
    22321 gcttaacacc acgggaataa agatagcgac aacgccggtt gaactcataa acgcgccaag
    22381 ccccgcgacg gtcagcatca acaaaaccaa cattttgatt tcactgttgc ccgccacttt
    22441 gaccagccat gttcccatta cggtggcaac accggtacgg accaaaccat cgccaataat
    22501 aaacaaggcg gcaatcagga caacgttagg atcagaaaag ccggaaaata cttcggggac
    22561 cgtcagcgtt ccgcttaatg caaacgcgac aataacaaac aaagcgaccg catccatacg
    22621 cactctgccc gtcgcaaaca agacgatggc aacggccagt aatgaaagaa cccaaatcaa
    22681 ttcaccgttc acaacttatc cttgttaatt gagggggatg acttgattct gccataaaaa
    22741 agccccgacg agacggggct aaatcat
//
LOCUS       DAJVSY010000059        22588 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.059, whole genome shotgun sequence.
ACCESSION   DAJVSY010000059 DAJVSY010000000
VERSION     DAJVSY010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22588)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22588)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22588
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.059"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..257)
                     /locus_tag="OQQ19_002006"
     CDS             complement(<1..257)
                     /locus_tag="OQQ19_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HCS1803641.1"
                     /translation="MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRK
                     LALEDEIWLRVFTVAKHLQRAGYCHGICTGEGLEIVGQGDC"
     gene            complement(248..718)
                     /locus_tag="OQQ19_002007"
     CDS             complement(248..718)
                     /locus_tag="OQQ19_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HCS1803642.1"
                     /translation="MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTAS
                     QARDYLLYLREDANWHNRDHSISVIREGTLWCLVSSAAGANTCHGSSPLVFVPRWPEV
                     EMSDLTPSLAFFGLRNTAWAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL"
     gene            complement(903..1697)
                     /gene="thyA"
                     /locus_tag="OQQ19_002008"
     CDS             complement(903..1697)
                     /gene="thyA"
                     /locus_tag="OQQ19_002008"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HCS1803643.1"
                     /translation="MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPL
                     VTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWP
                     TPDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS
                     CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHL
                     QLSREPRPLPKLIIKRKPESIFDYRFEDFEIEGYAPHPGIKAPVAI"
     gene            complement(1704..2579)
                     /gene="lgt"
                     /locus_tag="OQQ19_002009"
     CDS             complement(1704..2579)
                     /gene="lgt"
                     /locus_tag="OQQ19_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HCS1803644.1"
                     /translation="MTSSYLHFPEFDPVIFSIGPVALHWYGLMYLVGFIFAMWLATRR
                     ANRPGSGWTKNEVENLLYAGFLGVFLGGRIGYVLFYNFPQFMADPLYLFRVWDGGMSF
                     HGGLIGVIVVMIIFARRTKRSFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPNF
                     PFAMLFPGSRTEDILLLQTNPQWQSIFDTYGVLPRHPSQLYELLLEGVVLFIILNLYI
                     RKPRPMGAVSGLFLIGYGAFRIIVEFFRQPDAQFTGAWVQYISMGQILSIPMIVAGVI
                     MMVWAYRRSPQQHVS"
     gene            complement(2730..4976)
                     /gene="ptsP"
                     /locus_tag="OQQ19_002010"
     CDS             complement(2730..4976)
                     /gene="ptsP"
                     /locus_tag="OQQ19_002010"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HCS1803645.1"
                     /translation="MLTRLREIVEKVASAPRLNEALNILVTDICLAMDTEVCSVYLAD
                     HDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPSV
                     KEERFRAFLGVPIIQRRQLLGVLVVQQRELRQYDESEESFLVTLATQMAAILSQSQLT
                     ALFGQYRQTRIRALPAAPGVAIAEGWQDATLPLMEQVYQASTLDPALERERLTGALEE
                     AANEFRRYSKRFAAGAQKETAAIFDLYSHLLSDTRLRRELFAEVDKGSVAEWAVKTVI
                     EKFAEQFAALSDNYLKERAGDLRALGQRLLFHLDDANQGPNAWPERFILVADELSATT
                     LAELPQDRLVGVVVRDGAANSHAAIMVRALGLPTVMGADIQPSVLHRRTLIVDGYRGE
                     LLVDPEPILLQEYQRLISEEIELSRLAEDDVNLPAQLKSGERIKVMLNAGLSPEHEEK
                     LGSRIDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFNDKPVTLRTLDVGADKQL
                     PYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLNILLPMVTSLDEVD
                     EARRLIERAGREVEEMIGYEIPKPRIGIMLEVPSMVFMLPHLAKRVDFISVGTNDLTQ
                     YILAVDRNNTRVANIYDSLHPAMLRALAMIAREAEIHGIDLRLCGEMAGDPMCVAILI
                     GLGYRHLSMNGRSVARVKYLLRRIDFAEAENLAQRSLEAQLATEVRHQVAAFMERRGM
                     GGLIRGGL"
     gene            complement(4989..5519)
                     /gene="rppH"
                     /locus_tag="OQQ19_002011"
     CDS             complement(4989..5519)
                     /gene="rppH"
                     /locus_tag="OQQ19_002011"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001655775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HCS1803646.1"
                     /translation="MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGE
                     SAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLL
                     QLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMSLQE
                     NTPKPQNTSAYRRKRG"
     gene            6204..6893
                     /gene="mutH"
                     /locus_tag="OQQ19_002012"
     CDS             6204..6893
                     /gene="mutH"
                     /locus_tag="OQQ19_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutH"
                     /protein_id="HCS1803647.1"
                     /translation="MSQPRPLLSPPETEEQLLAQAQQLSGYTLGELAALAGLVTPENL
                     KRDKGWIGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPLTG
                     NSGVTWETSHVRHKLKRVLWIPVEGERSIPLAQRRVGSPLLWTPNEEEDRQLREDWEE
                     LMDMIVLGQVERITARHGEYLQIRPKAANAKALTEAIGARGERILTLPRGFYLKKNFT
                     SALLARHFLIQ"
     gene            6962..7675
                     /locus_tag="OQQ19_002013"
     CDS             6962..7675
                     /locus_tag="OQQ19_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HCS1803648.1"
                     /translation="MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQ
                     RAHARRLGLAGAMVMRLALLASIAWVTRLTNPLFTIFSQEISARDLILLLGGLFLIWK
                     ASKEIHESIEGEEEGLKTRVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAA
                     VVIAVGVMMFAARSIGDFVERHPSVKMLALSFLILVGFTLILESFDIHVPKGYIYFAM
                     FFSIAVESLNLIRNKKNPL"
     gene            7813..8031
                     /gene="ygdR"
                     /locus_tag="OQQ19_002014"
     CDS             7813..8031
                     /gene="ygdR"
                     /locus_tag="OQQ19_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein YgdR"
                     /protein_id="HCS1803649.1"
                     /translation="MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDD
                     DTGLVSYHDQQGNAMQINRDDVSQIIER"
     gene            8139..9179
                     /locus_tag="OQQ19_002015"
     CDS             8139..9179
                     /locus_tag="OQQ19_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(H)-dependent aldo-keto reductase"
                     /protein_id="HCS1803650.1"
                     /translation="MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGI
                     NLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPD
                     QALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDT
                     LDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPSIVTIQNPYSLLNRSFEVG
                     LAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKTAGARNTLFSRFTRYSGEQTQKAVAA
                     YVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEI
                     EAVHQVYTYPAP"
     gene            complement(9211..10404)
                     /gene="lplT"
                     /locus_tag="OQQ19_002016"
     CDS             complement(9211..10404)
                     /gene="lplT"
                     /locus_tag="OQQ19_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid transporter LplT"
                     /protein_id="HCS1803651.1"
                     /translation="MSESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQ
                     FYPEWSQPILQMVFVGAYILFAPFVGQVADSFAKGRVMMFANGLKLLGAASICFGINP
                     FLGYTLVGVGAAAYSPAKYGILGELTTGSKLVKANGLMEASTIAAILLGSVAGGVLAD
                     WHVLVALAACALAYGGAVVANIYIPKLAAARPGQSWNLINMTRSFLNACTSLWRNGET
                     RFSLVGTSLFWGAGVTLRFLLVLWVPVALGITDNSTPTYLNAMVAIGIVVGAGAAAKL
                     VTLETVSRCMPAGILIGVVVLIFSLQHELLPAYALLMLIGVMGGFFVVPLNALLQERG
                     KKSVGAGNAIAVQNLGENSAMLLMLGIYSLAVMVGIPVVPIGIGFGALFALAITALWI
                     WQRRH"
     gene            complement(10397..12556)
                     /gene="aas"
                     /locus_tag="OQQ19_002017"
     CDS             complement(10397..12556)
                     /gene="aas"
                     /locus_tag="OQQ19_002017"
                     /EC_number="2.3.1.40"
                     /EC_number="6.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acyl-ACP--phospholipid
                     O-acyltransferase/long-chain-fatty-acid--ACP ligase"
                     /protein_id="HCS1803652.1"
                     /translation="MLFSFFRNLCRVLYRVRVTGDTQALKGERVLITPNHVSFIDGIL
                     LGLFLPVRPVFAVYTSISQQWYMRWLKSFIDFVPLDPTQPMAIKHLVRLVEQGRPVVI
                     FPEGRITTTGSLMKIYDGAGFVAAKSGATVIPVRIEGAELTHFSRLKGLVKRRLFPQI
                     TLHILPPTQVAMPDASRARDRRKIAGEMLHQIMMEARMAVRPRETLYESLLSAMYRFG
                     AGKKCVEDVNFTPDSYRKLLTKTLFVGRILEKYSVEGERIGLMLPNAGISAAVIFGAI
                     ARRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLE
                     DLKADVTTADKVWIFAHLLMPRLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILA
                     NVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPEL
                     VYDRSCTVLFGTSTFLGHYARFANPYDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL
                     EGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGIEEGGRLQLKGPNIMNG
                     YLRVEKPGVLEVPTAENVRGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMV
                     SLEMVEQLALGVSPDKVHATAIKSDASKGEALVLFTTDNELTLDKLQQYAREHGVPEL
                     AVPRDIRYLKQMPLLGSGKPDFVTLKSWVDEAEQHDE"
     gene            12945..13976
                     /gene="galR"
                     /locus_tag="OQQ19_002018"
     CDS             12945..13976
                     /gene="galR"
                     /locus_tag="OQQ19_002018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator GalR"
                     /protein_id="HCS1803653.1"
                     /translation="MATIKDVARLAGVSVATVSRVINNSPKASEASRLAVHSAMESLS
                     YHPNANARALAQQTTETVGLIVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQ
                     KERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQMPGMVLINRILPGFENRCIALDD
                     RYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYYDALAESGIAANDRLVTFGE
                     PDESGGEQAMTELLGRGRNFTAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDVL
                     VSRYVRPRLTTVRYPIVTMATQAAELALALADNRPLPEITNVFSPTLVRRHSVSTPSL
                     EASHHATSD"
     gene            complement(13983..15245)
                     /gene="lysA"
                     /locus_tag="OQQ19_002019"
     CDS             complement(13983..15245)
                     /gene="lysA"
                     /locus_tag="OQQ19_002019"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HCS1803654.1"
                     /translation="MPHSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALK
                     QFDVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTAD
                     VIDQATLERVSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGE
                     NSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGVDYAHLEQVCGAMVRQVIEFGQD
                     LQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQ
                     SGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISALAADGRSLEHAPTVE
                     TVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRSLL
                     PEVLFDNGQARLIRRRQTIEELLALELL"
     gene            15367..16302
                     /gene="lysR"
                     /locus_tag="OQQ19_002020"
     CDS             15367..16302
                     /gene="lysR"
                     /locus_tag="OQQ19_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator LysR"
                     /protein_id="HCS1803655.1"
                     /translation="MAAVNLRHIEIFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEK
                     VIGLKLFERVRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIACLP
                     VFSQSFLPQLLQPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHTPAGTER
                     TELLSLDEVCVLPPGHPLAVKKVLTPDDFQGENYISLSRTDSYRQLLDQLFTEHQVKR
                     RMIVETHSAASICAMVRAGVGVSVVNPLTALDYAASGLVVRRFSIAVPFTVSLIRPLH
                     RPSSALVQAFSEHLQAGLPKLVTSLDAILSSATTA"
     gene            complement(16289..16981)
                     /gene="ygeA"
                     /locus_tag="OQQ19_002021"
     CDS             complement(16289..16981)
                     /gene="ygeA"
                     /locus_tag="OQQ19_002021"
                     /EC_number="5.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HCS1803656.1"
                     /translation="MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQVLLHSVD
                     FHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCTLPFL
                     HIADATGRAITGAGMTRVALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERAKINQI
                     IFEELCLGQFTEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEERSVLPVFDTAA
                     IHAEDAVAFMLS"
     gene            complement(17110..18525)
                     /gene="araE"
                     /locus_tag="OQQ19_002022"
                     /pseudo
     CDS             complement(17110..18525)
                     /gene="araE"
                     /locus_tag="OQQ19_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311725.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-proton symporter AraE"
     gene            complement(18840..19601)
                     /gene="kduD"
                     /locus_tag="OQQ19_002023"
     CDS             complement(18840..19601)
                     /gene="kduD"
                     /locus_tag="OQQ19_002023"
                     /EC_number="1.1.1.127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase
                     KduD"
                     /protein_id="HCS1803657.1"
                     /translation="MILSAFSLEGKVAVVTGCDTGLGQGMALGLAQAGCDIVGINIVE
                     PTETIEQVTALGRRFLSLTADLRKIDGIPGLLDRAVAEFGHIDILVNNAGLIRREDAL
                     EFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTA
                     SKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRW
                     GLPSDLMGPIVFLASSASDYVNGYTIAVDGGWLAR"
     gene            complement(19631..20467)
                     /gene="kduI"
                     /locus_tag="OQQ19_002024"
     CDS             complement(19631..20467)
                     /gene="kduI"
                     /locus_tag="OQQ19_002024"
                     /EC_number="5.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-4-deoxy-D-glucuronate isomerase"
                     /protein_id="HCS1803658.1"
                     /translation="MDVRQSIHSAHAKTLDTQGLHNEFLVEKVFVADEYTMVYSHIDR
                     IIVGGIMPITKTVSVGGEVGKQLGVSYFLERRELGVINIGGAGTITVDGQCYEIGHRD
                     ALYVGKGAKEVVFASIDTATPAKFYYNCAPAHTTYPTKKVTPDEVSPVTLGDNLTSNR
                     RTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACVFH
                     MMGQPQETRHIVMHNEQAVISPSWSIHSGVGTKAYTFIWGMVGENQVFDDMDHVAVKD
                     LR"
     gene            complement(20754..21935)
                     /locus_tag="OQQ19_002025"
     CDS             complement(20754..21935)
                     /locus_tag="OQQ19_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708633.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HCS1803659.1"
                     /translation="MKDVVIVGALRTPIGCFRGALAGHSAVELGSLVVKALIERTGVP
                     AYAVDEVILGQVLTAGAGQNPARQSAIKGGLPNSVSAITINDVCGSGLKALHLATQAI
                     QCGEADIVIAGGQENMSRAPHVLTDSRTGAQLGNSQLVDSLVHDGLWDAFNDYHIGVT
                     AENLAREYGISRQLQDAYALSSQQKARAAIDAGRFKDEIVPVMIQSNGQTLVVDTDEQ
                     PCTDASAEGLARLNPSFDSLGSVTAGNALSINDGAAAVMMMSEAKARALNLPVLARIR
                     AFASVGVDPALMGIAPVYATRRCLERVGWQLADVDLIEANEAFAAQALSVGKMLEWDE
                     RRVNVNGGAIALGHPIGASGCRILVSLVHEMVKRNARKGLATLCIGGGQGVALTIERD
                     E"
     gene            22190..>22588
                     /locus_tag="OQQ19_002026"
     CDS             22190..>22588
                     /locus_tag="OQQ19_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCS1803660.1"
                     /translation="MSNIWSKEETLWSFALYGTAVGAGTLFLPIQLGSAGAVVLFITA
                     LVAWPLTYWPHKALCQFILSSKTSAGEGITGAVTHYYGKKIGNLITTLYFIAFFVVVL
                     IYAVAITNSLTEQLAKHMVIDLRIRMLVSLG"
BASE COUNT         5792 a         6048 c         5441 g         5307 t
ORIGIN      
        1 atacagtcac cctgtccgac aatttccagc ccttcgccgg tacagatgcc atgacaataa
       61 cccgccctct ggagatgctt cgcgacggta aatacccgca gccagatttc atcttccagc
      121 gccagcttac gggtgctcgt taaactttca cgctgtaacg caggcagaaa gcgtgcagcc
      181 cccagcaaca atacgctact gatcgccata gcaatcaaca cttccagcag agaaaaacct
      241 tgctctttta caggcatcct tctgtttctc cttgctgaca aagccggagt cttccccacg
      301 gcgaaaccac cagccaccac tcgcccgttg agtttttgaa gcgaatatgc ccggcccatg
      361 cggtattgcg caggccaaag aaagcaagcg aaggtgtcag gtcgctcatt tcgacttcgg
      421 gccagcgtgg cacaaagacc aatggtgaac tgccatgaca ggtattggcc ccagcagcgg
      481 aactcacaag gcaccataac gtcccctccc tgataacgct gatactgtgg tcgcggttat
      541 gccagttggc atcttcacgt aaatagagca aatagtcccg cgcctggctg gcggtttgcc
      601 atagccgttg cgactgctgc cagtattgcc agccatagag tccacttgcg cttagcatga
      661 ccaaaatcag catcgcgacc agcgtttcaa tcagcgtata accacgttgt gttttcatgc
      721 cggcagtatg gagcgaggag aaaaaaagac gagggccagt ttctatttct tcggcgcatc
      781 ttccggacta tttacgccgt tgcaggacgt tgcaaaattt cgggaaggtg tctcgaagaa
      841 tttaatggag ggtaaaaaaa accgacgcac actagcgtcg gctctggcag gatgtttcgt
      901 aattagatag ccaccggcgc tttaatgccc ggatgcggag cgtagccttc aatctcaaaa
      961 tcttcgaaac ggtagtcgaa gatggattcg ggtttacgtt tgataatcaa cttcggcagc
     1021 ggacgcggtt cgcggcttaa ttgcagatga gtttgatcca tatgattgct gtacaggtgc
     1081 gtgtcgcccc ccgtccagac aaaatcgccc acttccagat cacactgctg cgccatcata
     1141 tgcaccagta acgcgtagct ggcaatgtta aacggcaggc cgaggaaaac gtcacaggag
     1201 cgctgataaa gctggcaaga gagtttgccg tctgccacat agaactggaa gaacgcatgg
     1261 cacggtgcca gcgccatttt atccagttcg cctacgttcc acgctgaaac aataatgcgg
     1321 cgcgaatccg ggtcgttttt cagctggttc agtaccgtag tgatctggtc aatatgacga
     1381 ccatccggcg ttggccaggc gcgccactgt ttaccataca ctggcccgag gtcgccgttt
     1441 tcatcggccc attcgtccca gatggtgaca ttgttttcgt gtagataagc aatgttagtg
     1501 tcgccctgca gaaaccacag cagttcatgg atgatggaac gcaggtggca acgtttagtt
     1561 gtcaccagcg ggaatccatc ctgcaggtta aaacgcatct gatgaccaaa aatggaaagc
     1621 gttccggttc cggtacggtc gtttttctgt gtgccttcgt cgagcacttt ttgcatcagt
     1681 tctaaatact gtttcatggt tcctcaggaa acgtgttgct gtgggctgcg acgatatgcc
     1741 cagaccatca tgatcacacc cgcgacaatc atcgggatgg aaagaatttg tcccatgctg
     1801 atgtactgca cccaggcacc agtaaactgc gcgtcgggct ggcggaaaaa ctcaacaatg
     1861 atgcgaaacg cgccgtaacc aatcaggaac aaacctgaga cagctcccat tgggcgcggt
     1921 ttacgaatat acaggttgag gataataaac agcactacac cttccagcaa cagctcgtaa
     1981 agctgtgatg ggtggcgcgg cagcacaccg taagtatcga aaatggattg ccactgcggg
     2041 ttggtttgca gcagcaaaat atcttctgta cgggagccag ggaacagcat ggcaaacggg
     2101 aagttcgggt caacgcggcc ccacaattca ccgttaataa agttgcccag acgcccggca
     2161 ccaagaccaa acggaatgag tggtgcgata aaatcagaga cctggaagaa ggaacgttta
     2221 gtacggcggg cgaagataat catcaccacg ataacgccaa tcaggccgcc gtggaaggac
     2281 atgccgccgt cccagacacg gaacagatac agcggatcgg ccataaactg cgggaagttg
     2341 tagaacagaa cataaccaat acgtccaccg aggaagacgc cgaggaagcc cgcatagagt
     2401 aagttttcaa cttcattttt ggtccagcca ctgcccggac gattcgcccg acgtgttgcc
     2461 agccacattg caaaaatgaa acccaccaga tacatcaggc cgtaccagtg aagcgccacg
     2521 ggtcctattg agaaaatgac cggatcaaac tccggaaaat gcagatagct actggtcatc
     2581 tgtcaccaca agttcttgtt atttcgctga aagagaacag cgattgaaat gcgcgccgca
     2641 ggtttcaggc gctccaaagg tgcgaataat agcacaaggg gacctggctg gttgccggat
     2701 accgttaaaa gatatgtata tgatccgcgc tataaccctc cgcgaatcag cccgcccatg
     2761 ccgcgacgct ccataaaggc tgcaacctga tgacgaactt cggtcgccag ttgcgcttcc
     2821 agactacgct gcgcaagatt ttctgcttcg gcaaaatcaa tgcgccgcag caggtatttt
     2881 acccgcgcta cagaacgtcc gttcatagac agatggcgat acccaagccc aatgaggatt
     2941 gccacgcaca tgggatcgcc cgccatttca ccgcacaaac ggagatcgat accatgtatt
     3001 tccgcttccc gggcgatcat tgccagagct cgtaacattg caggatgaag gctgtcataa
     3061 atgttcgcca cccgggtatt gttgcgatca acggccagaa tgtattgagt cagatcgttg
     3121 gtgccaacag agatgaaatc gacccgcttt gccagatgcg gcagcataaa taccattgac
     3181 ggtacttcca gcatgatgcc gatacgtggt ttgggaattt cgtaaccgat catctcctcg
     3241 acttcacgtc cggcacgttc aatcaggcgg cgtgcttcgt caacttcatc gaggctggtg
     3301 accatcggca acagaatatt caggttgccc gtagcggcat tagcacgcag catcgcccgc
     3361 acctggatca agaagatctc cggctgatcg agcgtaatgc gaatcccacg ccaacccagg
     3421 catggattct cttcgctgat cggcatgtaa ggcagctgct tatctgctcc gacatccagc
     3481 gtacgcaagg tgacgggttt atcattgaac atttgcagca tcccctgata ctgcgccacc
     3541 tgttcttctt ccgacgggaa accactttgc agcatgaatg ggatttcagt gcgataaaga
     3601 ccgatgccat caatacggct gcccagtttt tcttcatgtt ccgggcttaa accagcattg
     3661 agcatgactt ttatacgctc accgcttttt aactgcgcgg gtaaattgac gtcatcttcc
     3721 gccagacggc taagctcaat ctcttcacta attagccgct gatattcttg cagcagtatc
     3781 ggctccggat cgaccagcaa ttcaccgcga tagccatcaa cgatcagcgt cctacgatgc
     3841 agcaccgaag gctgaatatc cgcgcccatc acggtaggga gccccagcgc acgtaccatg
     3901 atcgcagcat gggagttggc tgcgccatct cgcacgacaa caccgactaa gcgatcctgg
     3961 ggcagctcag caagagttgt cgctgacagt tcatctgcca ccagaatgaa acgttccggc
     4021 caggcgttcg gcccttgatt agcgtcatca agatgaaaca gcaatcgctg acccagcgca
     4081 cgtaaatcgc cagcccgctc tttgagatag ttatcgctta gcgcggcaaa ctgttcggca
     4141 aatttttcaa tgaccgtttt taccgcccac tctgccaccg agcctttatc aacctcggca
     4201 aacaattcgc gacgcagccg ggtgtccgaa agcaggtgcg agtaaagatc gaaaatagcc
     4261 gccgtttctt tttgtgctcc ggcggcaaag cgtttgctgt agcggcgaaa ctcgtttgcc
     4321 gcttcttcca gcgccccggt caatcgttcg cgttccagag ccggatccag cgttgatgcc
     4381 tgatacacct gttccattaa aggtaacgtg gcatcctgcc agccttcggc aatcgccaca
     4441 ccaggtgctg ccggtaatgc gcggattcgc gtctggcgat attgcccaaa caaggcagtc
     4501 aactgcgact gagaaagaat agctgccatc tgggtggcaa gcgtcaccag gaaggattct
     4561 tcactttcgt catactggcg caactctcgt tgctgtacca ccagtacacc aagcaactgg
     4621 cgacgttgaa taattggtac gcctaaaaac gcgcggaaac gttcttcttt tacggagggg
     4681 atgtatttga agctggggtg cttttgcgca tctgcaaggt ttatcggttc cgccagcctg
     4741 ccaaccaggc cgacgatccc ttcatcaaac gcgagcgtta cagtgcgacc gcgtggtttt
     4801 ttcagccccc gggtcgccat caggtagtaa caacgtcgat catgatcggc caggtagacc
     4861 gaacagacct cggtatccat cgcaagacag atgtcggtaa ccagaatatt taacgcctca
     4921 ttcaggcgtg gtgcgctggc taccttttcg actatttcgc gcaggcgagt gagcataatt
     4981 ggcgtgactt aacctctttt acgtcgataa gcagatgtgt tttgtggttt tggcgtattt
     5041 tcctgcagtg acatcaccac actcgcgaac tctttcatta ccctacggta gacatcacgt
     5101 ttaaatgaca ccacctgtct gaccggatac cagtaactta cccatcgcca gccgtcaaac
     5161 tctggtgtac tgctggtttg catattgatt tctgcatcgc cgctcaccag ctgcaagaga
     5221 aaccattttt gtttttggcc gatacaaacc ggcttcgtgt cccaacgcac caaacgtttc
     5281 ggtaatttgt agcgcaacca gttacgcgtt gaagcaagga ttcgaacgtc tttgcggctt
     5341 aatcctactt cttcaaacaa ttcacggtac atcgcctgct ctgcggattc tccggggttg
     5401 attccgcctt gcggaaattg ccaggagtgc tgaccaaatc gccgggccca cattacctgc
     5461 ccctggcgat tacaaatcac gatacctacg tttgggcggt agccatcgtc atcaatcacc
     5521 ggactacctc aaaataaagc tttatatacg aatgattgtt tcatactcca ggaagacggt
     5581 aaaccactct ctgcagggca ttacacacta ataacaattg aataactcac agttatgtgc
     5641 agagttataa acagaggaag gggtggatag ccgtttttat tcaccttttc tgtggataga
     5701 gttgtgaaga actacggaat tactacggga aaacccggag cattctgaat aagcccgata
     5761 taggcatttt aaaatattca ttataagtca atgcattaca tgtaatttga gtaatgaaaa
     5821 agagtaattc gtgacccagg tcacacctct catttacggg ttggcgaaag atcaaccaat
     5881 gccgtattta tccacagaat gtgccactaa gttaagcact gaaccactaa aaactggagt
     5941 ttcgtcgcac gtcaaggctg taaatggaaa cagtagtgga ggtttttcac agttatccca
     6001 gctttctgtg gataacatgg tgtaagatcc tgtttatttt cagtgaccag atttggaaaa
     6061 cctattgcag tgctgcgcaa ctcgattatc ggcagcctaa aaagcaatat aaatcagaga
     6121 attgaacaac acatgtggaa aaagttacac tgcgaatatt cggtacataa ttgctgtttg
     6181 ttttttaacc aaggtatcat gacatgtccc aacctcgccc actgctctct cctcccgaaa
     6241 ctgaagaaca gttgttagcg caagcacagc aactttctgg ttatacattg ggagaactgg
     6301 cggcacttgc cgggctggtt acgccagaga atttaaaacg cgataagggc tggattggcg
     6361 tgttactgga gatctggcta ggtgccagcg cagggagtaa acctgagcaa gattttgctg
     6421 ctctgggcgt ggaacttaaa actatccctg tggatagtct tggtcgtccg ctggaaacaa
     6481 cattcgtttg tgttgccccg ttaacgggta atagcggggt gacctgggaa accagccacg
     6541 tgcgccacaa gctcaaacgc gtactgtgga taccggttga aggcgagcgc agcatcccgc
     6601 tggcgcagcg tcgcgtagga tccccgttgc tgtggacccc gaatgaagag gaagaccgac
     6661 agctacgcga agactgggaa gaattaatgg atatgattgt tctcggtcag gttgagcgga
     6721 tcaccgctcg tcacggggaa tatttacaga taagaccgaa agcagcgaat gcgaaagcgc
     6781 ttaccgaagc cattggtgcc cggggcgaac ggattctgac gctgccacgc ggcttttatt
     6841 tgaagaagaa tttcaccagt gcactactgg cccgtcattt tctgatccag tagccatcgc
     6901 tttgacctgc cgctttccgg gcatataatt accgcttcat ttttttggca gggcttttta
     6961 gatgttattt gcatggataa ccgatcctaa cgcctggctt gcgctcggta cgctgacgct
     7021 gctggagatc gttcttggga tcgacaatat tattttcctt tctctggtgg tggcaaagct
     7081 tcccacagca caacgtgctc atgcgcgccg tctggggttg gcgggagcca tggttatgcg
     7141 tctggcgctg ctggcatcaa tcgcctgggt tacgcgcctg acaaatccgc tttttacaat
     7201 attcagtcag gaaatttctg cccgtgattt gattctgctt ctgggtggct tgttccttat
     7261 ctggaaagcc agcaaggaaa tccacgaatc cattgaaggt gaagaagaag ggctgaaaac
     7321 acgcgtttca tcattcctcg gcgctatcgt gcagattatg ctgctggata ttatctttag
     7381 cctcgactcg gtgattacgg ctgtgggtct gtcagatcac ctgtttatta tgatggcagc
     7441 cgtggtgatt gccgtaggcg tgatgatgtt cgccgcgcgc tcgattggtg attttgtcga
     7501 acgccatcct tcggtaaaaa tgctggcgct ctctttcctg attctggtgg gctttaccct
     7561 gattctggaa agtttcgaca tccacgtacc gaaaggttac atctacttcg cgatgttctt
     7621 ctctattgcg gttgaaagcc tcaacttgat tcgcaacaaa aagaatccgc tctgatactc
     7681 cgtacgctct cctgcgggag ggcgtactca ctccttttac cctcacagtt taagattttc
     7741 ctgctttcaa gatatataac gtcgttttat aaacagacta ttatcatagg taggccaaat
     7801 gaggataacc ggatgaaaaa atgggcagta ataatttctg cagtcggact ggcgtttgct
     7861 gtttccgggt gttccagtga ttacgtcatg gcgaccaaag atggccgtat gattttgacc
     7921 gatggaaaac ctgaaattga tgatgatacc gggctggtga gttatcacga tcagcaaggt
     7981 aacgcgatgc aaattaaccg tgatgatgtt tcgcaaatta ttgaacgtta acaaataagg
     8041 tcagcatccg gctggcctta agatttttct ctttcccttt tcccttccct ctgccatttt
     8101 tatattcctt atgtcgtgat tataaaaagg aaacggctat gcaatatcac cgtatacccc
     8161 acagttcgct ggaagtcagc acgctggggc ttggcacgat gacgtttggt gaacagaaca
     8221 gcgaagccga cgcccacgca caactcgact atgccgtcgc tcagggcatt aaccttatcg
     8281 acgttgccga aatgtaccca gtacctccgc gccccgaaac gcaagggtta accgaaacct
     8341 acgtcggcaa ctggctggcg aaacatggca gccgcgaaaa gttaattatc gcctccaaag
     8401 tgagcggacc gtcgcgcaat aatgacaagg gcatccgccc ggatcaggcg ctggatcgga
     8461 agaatatccg cgaagcgctg catgacagcc tcaagcgcct acagactgat tacctcgatc
     8521 tttatcaggt gcactggccg cagcgcccga ccaactgctt cggcaaactc ggttatagct
     8581 ggacggattc tgcgcctgcg gtttcgctgc tggatacgct ggacgcactg gcagagtacc
     8641 aacgcgcggg aaaaattcgt tatatcggcg tgtcgaacga aactgcattt ggcgtaatgc
     8701 gctacctgca tctggcggac aaacacgatc tgccgagtat tgtcaccatt cagaaccctt
     8761 acagtctgtt aaaccgcagt tttgaagtag gtctggcaga agtcagccag tatgaagggg
     8821 tcgaactgct ggcctattca tgcctgggtt tcggcacgct gaccgggaaa tatctcaatg
     8881 gtgcaaaaac cgctggcgca cgtaatacgc tctttagtcg gttcacccgc tatagcggtg
     8941 agcaaacgca aaaagccgtc gcggcgtatg ttgatatcgc cagacgtcat ggcctggacc
     9001 ctgctcagat ggcgctcgcg tttgtacgcc gtcaaccgtt tgttgccagc actctgctgg
     9061 gcgcaaccac gatggatcag ctgaaaacta acatcgaaag tttgcatctg gagttaagcg
     9121 aagacgtatt agctgaaatt gaagcggtgc atcaggttta tacttatccg gcaccataag
     9181 attaacgccg gttaaaaccg gcgttaaata ttaatgacgg cgctgccaga tccacagcgc
     9241 cgttattgcc agcgcaaaca gcgcaccgaa gccaatgcca atgggcacga ccgggatgcc
     9301 taccattacc gccagcgagt aaatgcccag catcaacaac atggcgctgt tttcgccaag
     9361 gttttgtact gcaatcgcat tccccgcccc gacgcttttt ttaccccgct cctgtagcaa
     9421 cgcattgagc ggaacgacaa aaaagccccc catcacgcca atcagcatca acaaggcata
     9481 ggctggcagc agctcgtgtt gcagggaaaa aatcagtacc accacgccaa tcaaaatccc
     9541 ggctggcata cagcgtgaca cggtttccag cgtaactaac ttcgctgccg cacctgcgcc
     9601 aaccacgata ccaatcgcta ccatcgcgtt gagataggtg ggcgtagagt tatcggtaat
     9661 gcccagcgcc accggtaccc acagcaccaa caggaaacgc agcgtgacac ccgctcccca
     9721 gaataaactg gtgcccacca gcgaaaaacg cgtttcacca ttgcgccata gcgaggtgca
     9781 ggcattcagg aaactgcggg tcatgttgat gagattccaa gactgccccg gacgcgccgc
     9841 cgccagtttg ggaatgtaga tattggcaac gaccgcacca ccgtaggcca gtgcgcatgc
     9901 ggccagggcg acgaggacat gccagtcagc cagcacacca ccggctacgg aaccgagcaa
     9961 aatcgccgct atggtagaag cttccattaa accgttagct ttcactaact tactacccgt
    10021 ggttaattcg ccgagaatac cgtatttcgc cggtgaatag gctgcagcac caacccccac
    10081 cagcgtatag ccgagaaacg gattgatacc aaagcagata ctggctgcgc ccagcagctt
    10141 caggccgttg gcaaacatca tcacccggcc tttggcgaag ctatccgcca cctgcccgac
    10201 aaacggcgca aaaagaatgt aagcacctac aaacaccatt tgcaggatgg gctggctcca
    10261 ctccggatag aactgcgctt tcagtaacgc cagagtggca aacagtaggg cattatcgcc
    10321 aaacgcagag agaaactgcg ccacgataac cgctttcatc cccttcgacc acaacgaagt
    10381 gttagtgtgc actgactcac tcatcgtgtt gttccgcttc gtctacccag cttttcaacg
    10441 tgacaaagtc aggtttgccg ctgccaagta atggcatctg tttcagatag cgaatatcgc
    10501 gcggtacagc aagctccggc acgccgtgct cgcgggcata ctgttgcaac ttatcgagcg
    10561 tcagttcgtt atctgtggtg aaaagcacca gtgcctcgcc tttgctggca tcgctcttaa
    10621 tcgcagtggc atggacttta tctggcgaaa caccaagtgc cagttgttcc accatttcca
    10681 gcgacaccat ttcgcctgca attttggcaa agcgttttgc gcggccctga atctgcacaa
    10741 agccctgctc gtcaaaacgc acaatatcgc cagtgtcata ccagccgcgc tccatttcgc
    10801 cgcgaacatt ctcggcggtg ggcacttcca gtacacctgg cttctccacc cgcagatagc
    10861 cgttcattat gttcggccct ttcagttgca ggcgtccgcc ctcttcgata ccaggaaccg
    10921 acaacaggcg cgcatccatt cctggtagaa tacgccctac cgtaccgggt ttcgccgcca
    10981 tcggtacgtt gatagaaacg acaggcgcgc actcggttac accatagcct tcaaggatgc
    11041 gcaggccaaa tttatcctgc caaagctgtt tggtactttc ttgtagtttt tctgcgcctg
    11101 ccaccacata gcgtagacga tagaagtcat acgggttggc gaaacgcgcg tagtgaccga
    11161 ggaaagtcga ggtaccgaac aacacggtgc aactgcggtc atacaccaac tccggcacaa
    11221 tgcggtaatg cagcgggctt ggataaagga acacttctgc acctgtaagc agtggcgtaa
    11281 acaggcctac cgtcagccca aaggagtgaa acagcggtaa tgccgacata aagcgatcgt
    11341 tggtggtgaa gtcggcaatc gttttaatct gctcgacgtt cgccagaatg cttttatggc
    11401 tatggacgac gccttttgga tggccttcag aaccggaggt aaagaggatc agcgcctctt
    11461 cttccggctg ctgttttacc tgcgccaggc gcggcatcag caaatgagcg aagatccata
    11521 ctttgtcggc agtggtgaca tctgctttta aatcttccag atagacccag cgcacctgag
    11581 taagttgctc cggcagatgc cagagtttgc ctttatcgag aaactggcgg gaagtgaaga
    11641 tggttttgat ttcagccgcc gtaatagcac tggtcagccc ttttacccca gcagtgtagt
    11701 tcatcattgc gggaatgcgg cgacgcgcga tggccccaaa aatcactgcc gcactgatgc
    11761 ctgcattggg cagcattaag ccgatgcgtt cgccttcaac actgtatttt tcaaggatgc
    11821 gtccaacaaa cagcgttttc gtaagcaatt tgcgatagga gtctggggta aagttgacgt
    11881 cttcgacaca tttcttcccg gctccgaagc ggtacattgc actcagtaaa gattcgtaca
    11941 gagtttcacg cgggcgcacc gccatacgcg cttccatcat tatttgatgc agcatttcgc
    12001 cagcgatttt gcgacggtca cgggcacgcg acgcatccgg catcgccacc tgcgttggag
    12061 gcaaaatatg cagagtaatt tgcgggaaca agcgacgttt aaccagacct ttcaggcggc
    12121 tgaagtgcgt aagttccgcc ccttcaatac gcacaggaat aaccgttgca ccagacttcg
    12181 ccgcgacaaa acccgcgcca tcgtagattt tcatcagcga gcctgtagtg gtgatgcgtc
    12241 cttcagggaa aatcaccact ggtcggccct gttccaccag acgtaccaga tgtttaatag
    12301 ccataggttg cgtcgggtcg agaggaacaa agtcgataaa tgatttcagc caacgcatat
    12361 accactgttg gcttattgag gtgtaaacgg caaacactgg acgcacaggt aaaaacagtc
    12421 caagcaaaat gccatcaata aaagagacgt gattaggcgt aattagaacg cgctcgccct
    12481 tcagtgcctg ggtgtcaccc gtaacgcgaa cgcgatacaa aacacggcac aaatttcgaa
    12541 aaaagctaaa aagcattcca actccctttg ctctgattca gtaaaagcga atggagggag
    12601 attacacgag ataaagaacg cgagcgacag taaattaggt gcgaaaaaaa acctgcgcat
    12661 ccgcgcaggt tggtgcaaga gacagggtac gaagagcgta ccgaataatc tcaccaatca
    12721 atacctctgg gatcaccact ttagcaacct gaagccaaac gccaccagcg gtcaatcgca
    12781 acagcgtttc gcaaagtgta accaaaggtt tgcaatctct ttttttgtct tacttatttg
    12841 cgtttggctc acattcccac gatgaaaaca cgccactcct tgaaccaacg ggcgttttcc
    12901 gtaacactga aagaatgtaa gcgtttaccc actaaggtat tttcatggcg accataaagg
    12961 atgtagcccg actggcaggc gtttcagtcg ccaccgtttc ccgcgtcatt aataattcac
    13021 ccaaagccag cgaagcttcc cggctggctg tgcatagtgc aatggagtct cttagctatc
    13081 acccgaacgc caacgcccgt gcgctggcgc agcagaccac tgaaacggtc ggtctgatcg
    13141 ttggtgatgt ttccgatccg tttttcggtg caatggtgaa agcggtcgaa caggtggctt
    13201 atcacaccgg taatttctta ttgattggca acggttacca caacgaacaa aaagagcgtc
    13261 aggctattga gcaactgatc cgccatcgct gtgctgcgtt ggtcgtccat gccaaaatga
    13321 tcccggatgc cgatttagcc tcattaatga aacaaatgcc cggtatggtg ctgatcaacc
    13381 gtatcctgcc tggctttgaa aaccgttgta ttgctcttga cgatcgttac ggtgcctggc
    13441 tggcaacgcg tcatttaatt cagcaaggtc atacccgcat tggttatctg tgctctaacc
    13501 actctatttc tgacgccgaa gatcgtctgc aagggtatta cgatgccctt gctgaaagtg
    13561 gtattgcggc caatgaccgg ctggtgacat ttggcgaacc agacgaaagc ggcggcgaac
    13621 aggcaatgac cgagcttttg ggacgaggaa gaaatttcac tgcggtagcc tgttataacg
    13681 attcaatggc ggcgggtgcg atgggcgttc tcaatgataa tggtattgat gtaccgggtg
    13741 agatttcgtt aattggcttt gatgatgtgc tggtgtcacg ctatgtgcgt ccgcgcctga
    13801 ccaccgtgcg ttacccaatc gtgacgatgg cgacccaggc tgccgaactg gctttggcgc
    13861 tggcggataa tcgccctctc ccggaaatca ctaatgtctt tagtccgacg ctggtacgtc
    13921 gtcattcagt gtcaactccg tcgctggagg caagtcatca tgcaaccagc gactaaccgc
    13981 agttaaagca attccagcgc cagtaattct tcgatggtct ggcgacggcg aatcaaccgc
    14041 gcctgaccat tatcaaacag aacttctggt aacagcgaac ggctattgta gttggatgac
    14101 attgatgcgc catatgcccc tgtatcatgc agtaccagat aatcacctgc cttcacttcc
    14161 ggcaaggcgc gggtttcaac atttccccct tcctgctggg taaagacatc gcccgattca
    14221 cataacggtc cggcgacgac ggtttccacc gttggcgcgt gttccagaga acgaccatca
    14281 gctgccaggg cactgatatg gtggtaacta ccgtacattg ccgggcgcat cagatcgttg
    14341 aacccggcat caaccagcac aaagtggcgg ctccccattt gtttgacgct ccgcacctga
    14401 gtaattaata cgccagactg cgctaccagg aagcgacccg gttcaatttc cagtttcaca
    14461 gggtggccca aatggcgggc gatttgctca cgcgcggcat tccacagacc ataataatgt
    14521 tcggtatcaa ccgcctcttc accctgttga taaggaacag aaagcccacc gcccgcagaa
    14581 atagcctgta aatcctgacc gaattcgatg acctgacgca ccatagcacc acacacctgt
    14641 tccagatggg cataatcaac gccagaacca atgtgcatgt gaatgccgac cagctgcaga
    14701 tgatgacgtt gtatcacgtc cagtgcggcg ggcagatcgg tgtaccagat accgtgcttg
    14761 ctgttttcgc caccggtatt ggttttttgg ctatgtccgt gaccaaaccc cggattaacg
    14821 cgcagccata cccgatgccc tggcgaaacc tggcccagtt ggtcgagcat atcaacagaa
    14881 cccgcattca ccggaatttg caattcactg acgcgttcaa gcgtcgcctg atcgataaca
    14941 tctgccgtaa aaacaatatc atcggggtgc gtttgcggat tgtaacccgc cgccaacgca
    15001 cgctctattt cgcctaacga gacggaatcc actttcacgc cctgctcacg cattaagcgc
    15061 aaaatatgaa tattggaaca ggctttctgt gcaaagcgca ccacatcaaa ctgtttcagc
    15121 gctgcaatct gccgacgaat aatttgcgca tcgtagaccc acaccgggca gccaaattca
    15181 gcgggcaaac gcagcagatt ttcggcggtg agatcggtat cggtgctgaa cagtgaatgt
    15241 ggcataacaa actccagata agtgcttttt tatgattacg ccacatcata aaaagaataa
    15301 aaaatatcga tttatgtcga gtctatgcaa aaatgatatg gattaccgga ttgcgagaga
    15361 gcgctaatgg ccgccgttaa cttacgtcat attgaaattt ttcatgcggt aatgaccgcc
    15421 ggaagcctga ctgaggcggc acacctgcta cacacctcac agccaaccgt cagccgcgaa
    15481 cttgcgcgct ttgagaaggt gatcgggctg aaattgtttg agcgcgtacg tgggcgatta
    15541 catcctaccg tgcaaggact gcgtctgttt gaagaagtgc aacgatcctg gtacggactg
    15601 gatcgaattg tcagcgctgc agaaagtctg cgcgagtttc gccagggaga actgtctatt
    15661 gcctgcctgc cggtcttttc gcaatctttt ttaccgcagc tcctgcaacc ctttctggca
    15721 cgttatcccg atgtcagctt aaatatcgtg ccccaggaat caccgctact tgaagagtgg
    15781 ctctcggccc agcgtcatga tttaggactc actgagacac tccatacgcc tgcgggaaca
    15841 gaacgtaccg aattactctc tttagatgaa gtgtgtgtgt tacctccggg tcatccgctg
    15901 gcggtaaaaa aggtattaac gccggatgat tttcagggtg agaactacat cagcctttcc
    15961 cgtactgaca gctatcgcca gttgctggat cagctattta ctgaacatca ggttaaacga
    16021 cgcatgatcg tagaaaccca cagcgccgcg tcaatctgcg caatggtacg ggcgggggta
    16081 ggtgtttcgg tggttaaccc gctcaccgca ctggattatg cggcaagcgg tttagtggtg
    16141 cggcggttca gtattgcggt tccgttcaca gtcagcctga tccgccccct gcaccgcccg
    16201 tcatcagcgc tggtgcaggc gtttagtgag catttacaag cggggttacc gaaactggtc
    16261 acttctcttg acgctatttt gtcgtcagct acgacagcat aaaagcgaca gcatcctcgg
    16321 catggatcgc cgcagtatca aacacaggca aaacactgcg ctcttctggc accagtaaac
    16381 caatttctgt gcagccaaaa atgacgccct gtgcgccctg ttctgcaagg cgagcaatca
    16441 cttgcgcata ataagcgcgt gacgcttcgg taaattgccc cagacacagt tcttcaaaaa
    16501 taatctgatt aattttcgcc cgttcatccg cttcaggaat aagacaattg atggaaaatt
    16561 gttccgtcag ccgcccgcga taaaaatcct gttccatggt gtaacgcgta cccagcagcg
    16621 ccacacgagt cattccggcc ccggtaattg cacgtccggt ggcatccgca atgtgtaaga
    16681 aaggcagagt gcaacgtgac tcaatggcat ccgccacttt atgcatcgta ttggtacata
    16741 acacaatacc ttctgcgccc gcccgctgta agccaagcgc cgcctcagcc agaatgtccc
    16801 cggttttatc ccattccccg cgacgctggc actcttctat ttcatgaaaa tcgacgctat
    16861 gtagcagcac ttgcgcagag tgaagcccac caagccgctg tttaatgcct tcatttatca
    16921 aacgatagta aggaatggtg gattcccagc tcattcctcc cagcaaacca attgttttca
    16981 ttcctctctc ctgatgtgtg ttaccgcaac aaggctgaat aaggaacgag acaaacgcct
    17041 caacggccaa gtgcccaatc tctattaacg aaaaaagggc cggatgtaca gcacatccgg
    17101 cccgtgaaat cagatgccga tatttctcaa cttctcgcct gccatcagtt tgcgttcgat
    17161 atgttccagc gtgacatttt tggtttccgg aatgagccag aaagtgatgc ccacaaacgc
    17221 aatgttcagc gcagtgtaga gccagaacgt accggcagcg ccaatgctgt cgagcagcgt
    17281 caggaaggtc gccgataatc atattcgaca cccagttcgt ggtggtcgaa caggtaatac
    17341 cgaaatcgcg gcatttcagc ggctgaattt cagagcacag gatccacacc actggcgcgg
    17401 cgctcatcgc ataaccggca atacacatca tcgtcatgcc aacagagagc caggacaatc
    17461 cactggaagc cgtaccgtta tcaaactgca tcaggcaata gcccagcacc agagtgccta
    17521 acgccatcac gctgaaacca attttcagag ccggtttacc cctgctttat ctaccgtaaa
    17581 caccgcaata aaggtggcga acataaaggt cagccctacg accagagtcg caatcatctg
    17641 ttgttctgtg gtcgtaaagc ccgccatttt gaagatacgc ggcgcgtagt acatgatgat
    17701 gttcataccg gtaaactgct gcatcgcctg caacaacata ccgagaaaca cagcacgacg
    17761 gacgttacgg ttgatcttaa acagtgccca accgccctgt tttaacttca ggctttcacg
    17821 aatttcgttg agttcttctc gcgctttttc cgacgtatcg cgcagcatac gcaatacttc
    17881 ttccgcctca atatgacgcc ccttttccgc caaccagcgc gggctatttg gcaggaagac
    17941 caccagaata atcagcagaa ctgctggtaa agcaagaacc cccaacattg cgcgccagtt
    18001 accgctataa ctgaacgctg tatcggataa aaacgccagc acgatgccga gtgtgaccat
    18061 caactggtac atactgatca tcttaccgcg aacgttttca cttgccattt cagaaagata
    18121 cagaggagcg gtgtaagacg cgatcccgac agcaatgccc agccccacac gagcggcgat
    18181 taacatctct acgctggtcg caaaagcgga ccctatagaa ccgagtacaa acaggatggc
    18241 ccccgccatc aggctgtatt tacgccccag gcggaacgac agccaaccat taaacagcgc
    18301 accaattgct gcgccgagca tcatgctact aaccacccat tcctgcaaat gactggtcag
    18361 cacaaagtga tcggtaatga acggcaacgc tccggcgatt acgccgatat caagaccaaa
    18421 taacaatcct gcgaccgcag cagctaccga aacaaacata ttcatacgcc gcgtatcccg
    18481 caaagaacgt ggcgttaaag cagattccgt attgatagta accatttttt cctgccagca
    18541 gagagtaaga catagtgaaa aaatacgtga acaactcacg caggtgtcag gtcggaaaca
    18601 gcataaatat ggattaaatt gctgcgacat gtcgttatgt gatggatatt ccaattttca
    18661 aattaagttg aattattgag attattatta accacctaat tttacagcag ataaaattca
    18721 taaagttcat taattgataa ttaatatgga ttatttcata accatgatat ggattatgat
    18781 gatctacagg tataaaaaac cctgccatgc ggcagggtca taaaagtaag aagaatgaat
    18841 taacgcgcca gccaaccgcc atccacggca atggtataac cattcacata atctgaagcg
    18901 ctggaggcaa ggaacactat cggccccatc aggtcactcg gcagtcccca acgaccagct
    18961 ggaatgcggt cgagaatttc cgcgctacgt tgttcatctg cccgtagttg ttgagtattg
    19021 ttggtcgcca tgtaacccgg agctatcgca ttaacattaa tgttgtgttt agcccattcg
    19081 ttcgccatca atcgcgtcac acccatcacg ccgctttttg atgcggtata agaaggcaca
    19141 cggatcccgc cctggaagga gagcattgac gcgatattga taatcttgcc gccattgcct
    19201 tgcgcgataa agtgtttcgc cgctgcctga gacatgaaga atacgctctt gatattcagg
    19261 ttcatgacat cgtcccagtc tttttcgctg aactcgagag cgtcttcgcg gcgaatcaat
    19321 ccggcgttat tcaccaggat atcaatatga ccaaattcag ctaccgcgcg atccagcagt
    19381 ccaggaatgc catcaatctt tcgcagatcg gcggtcaggc ttaaaaaacg acgccccagc
    19441 gccgtgacct gctcgatggt ttcagtcggt tcaacgatgt taatgccaac aatgtcacag
    19501 cccgcttgcg ccagccccaa cgccatcccc tggcccagcc cagtatcaca accagtgacg
    19561 accgcaactt taccttcgag agaaaatgca cttaaaatca taacaatacc ttattcgttt
    19621 atgcccacaa ctagcgcaaa tctttaacgg ccacatggtc catatcatca aagacctggt
    19681 tttcaccaac catgccccag ataaaggtat aagctttggt tccgacgccg gaatggatcg
    19741 accagctcgg ggagatcacc gcctgctcgt tatgcatcac aatgtgacgc gtttcttgcg
    19801 gttgccccat catgtggaaa acgcaggcgt catcatccat attgaaatag aaataaactt
    19861 ccatccggcg ctcgtgggtg tgacacggca tggtgttcca caagttacct ggagccagct
    19921 ccgtcagccc catactcaat tggcaggttt ccagcacatc cgggacaaaa tatttgttaa
    19981 tagtgcgacg gttactggtg aggttatcgc ctaacgtgac tggagatact tcgtccgggg
    20041 tgactttttt ggtgggatac gtcgtatgcg cgggtgcgca attgtaataa aactttgccg
    20101 gagtggcggt atcaatactg gcaaagacaa cttcttttgc acctttacca acatacaggg
    20161 cgtcgcggtg acctatttca tagcattggc catcgacagt aatcgtaccg gcaccgccaa
    20221 tattgataac acctaactcg cgacgttcaa ggaaatagct tacgccgagt tgtttaccaa
    20281 cttccccgcc aacggaaacc gttttagtta tcggcataat gccgccaaca ataattcggt
    20341 caatgtggct gtaaaccatg gtgtactcat cggcgacaaa taccttttca accaaaaatt
    20401 cattgtgcag cccttgggta tccagcgttt ttgcgtgcgc actgtggatg ctctgtctta
    20461 cgtccacatc aacctccgat aatcagtgaa gcgtgaaaat agaaaacgat agtgaaacac
    20521 tgtttcgttt tctctataaa gggatgatat gcccatgggc tagggttttc aattaaaaat
    20581 aaaacaatgt tttattttta agttaaggat taaaaaaagt gcagtgtcga tcacgaatat
    20641 gtcatgagaa tggaaaaatg agggagccca gaaaatgtat gtcgacttgc cagccatcat
    20701 tattcaacag attaatgacg gcagatattt atcggtaagg aggaaatgca gagctactcg
    20761 tcacgttcaa tggtcaatgc cacgccctgg cccccgccga tacaaagcgt tgccagccct
    20821 ttgcgggcat tacgtttcac catttcatga accagagaaa ccaggattcg gcaaccggaa
    20881 gcgcctatcg ggtgaccgag tgcgatcgcg ccaccattga cattgacccg acgctcatcc
    20941 cactcaagca tcttgccaac cgaaagcgcc tgtgcagcaa acgcttcatt agcctcgata
    21001 agatcgacat cagccaactg ccagcctaca cgctccaggc aacggcgggt cgcatacacc
    21061 ggcgcaattc ccatcaatgc cggatctaca ccaacgctgg caaatgcgcg gatgcgggcc
    21121 agcacgggta aattcaacgc tcgtgctttg gcttcgctca tcatcattac cgcagctgcg
    21181 ccatcgttta tggataatgc attccccgcg gtcacagaac cgagactatc aaatgaagga
    21241 tttaaacggg ctaaaccttc tgcactggcg tcagtgcatg gctgttcatc ggtatcaaca
    21301 accaacgtct gaccgttact ttggatcatt accgggacga tctcatcttt aaatcgtccg
    21361 gcgtcaatcg ccgctcgcgc tttttgttgc gagctaagtg cgtaagcatc ctgcaactga
    21421 cggctgatgc catattcgcg agccagattt tcggcggtga caccaatatg ataatcattg
    21481 aaggcatccc acaacccatc atgcaccaga ctgtcaacca actggctatt gccaagctgt
    21541 gcaccggtgc ggctatcagt cagaacatgt ggtgcgcggc tcatgttttc ctggccaccg
    21601 gcgatgacaa tatcagcctc gccacactgt atcgcctgag tagccagatg cagtgcttta
    21661 agcccagaac cgcaaacgtc attaatagtg attgcagaaa cgctattagg aagaccacct
    21721 ttaatagccg attgccttgc cggattctgc cctgcccctg cagtcaacac ctgaccaaga
    21781 attacttcat ccaccgcata tgcaggaacg ccggtacgtt ctattaacgc tttcacgacc
    21841 aaactaccaa gttccacggc ggaatgaccc gctaacgcac cacgaaagca gccgataggt
    21901 gtccgtaacg ccccgacaat cacaacgtct ttcatcacaa cctcgcacca attaacagtg
    21961 caatagtaaa tgattgttaa ttacagttat cttaattgtt taaaaaaagt gatttttatc
    22021 acaaaagaaa tatgcctgag cagcagtcag agacataact ggcacgtaag gtttgcaacc
    22081 actaacccac caatagaggg gtagataggg cgttaatctc ccatacttaa cctggtttat
    22141 ggtaaattgc cctccatttt gtttaatttg tagatgatac gttcagataa tgtctaatat
    22201 ttggtctaaa gaagaaactc tgtggagttt cgcgctctac ggcacagccg ttggtgcagg
    22261 cacgctcttc cttcctattc agttaggttc ggcaggggct gtggtcctgt ttattactgc
    22321 tctggtcgcc tggcctttaa catattggcc acataaagct ttatgccagt tcatcctctc
    22381 atcgaaaaca tcagcaggtg aagggataac gggcgcggta acacactact atggcaagaa
    22441 gattggtaat ctgattacca cgctgtactt catcgccttt tttgtcgtcg tgttgatata
    22501 tgcagtggca attaccaact cacttacaga acagctggca aagcatatgg ttattgatct
    22561 tcgcatccgt atgttggtga gtctgggt
//
LOCUS       DAJVSY010000060        22466 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.060, whole genome shotgun sequence.
ACCESSION   DAJVSY010000060 DAJVSY010000000
VERSION     DAJVSY010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22466
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.060"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            53..244
                     /locus_tag="OQQ19_002027"
     CDS             53..244
                     /locus_tag="OQQ19_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS1803661.1"
                     /translation="MKYGKLGYIVPRPQKIRGRWLIDRRAVFVGPGETGIAPEIHTGD
                     DDALKEILTHVTEATKKQH"
     gene            213..1319
                     /locus_tag="OQQ19_002028"
     CDS             213..1319
                     /locus_tag="OQQ19_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage integrase Arm DNA-binding
                     domain-containing protein"
                     /protein_id="HCS1803662.1"
                     /translation="MSPRPRKNSTDVAGLYEKFDRRTGRVYYQYKNPVTGKFHGLGTD
                     KGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRRGIRLKAWVDRYLKIQDTRLKN
                     GDIAATTHKEKTRMAAYLVSRLGNHPLKELEVRDFALILDEWLDKDMVSTARVNRGLW
                     VDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRARLTMEDWQKIYNATPEKHFIRNAML
                     LAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTLRCDAIGITLKEVIDGC
                     RDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGIIPPAGKTPPTFHEQRSLSE
                     RLYRAQGIDTKTLLGHKVQATTDRYNDTRGQEWV"
     gene            1499..2293
                     /gene="potC"
                     /locus_tag="OQQ19_002029"
     CDS             1499..2293
                     /gene="potC"
                     /locus_tag="OQQ19_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HCS1803663.1"
                     /translation="MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTT
                     KWYSLLMNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKPFVSGMLFV
                     VMISPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFCLPFVVVTVYSRLKGFDVRMLE
                     AAKDLGASEFTILRKIILPLAMPAVAAGWVLSFTLSMDDVVVSSFVTGPSYEILPLKI
                     YSMVKVGVSPEVNALATILLVLSLVMVIASQLIARDKTKGNTGDVK"
     gene            2290..3336
                     /gene="potD"
                     /locus_tag="OQQ19_002030"
     CDS             2290..3336
                     /gene="potD"
                     /locus_tag="OQQ19_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein PotD"
                     /protein_id="HCS1803664.1"
                     /translation="MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEYVPPGLLE
                     QFTKETCIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKS
                     KLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEYK
                     GSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPY
                     MEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLIN
                     FLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPDAETIKNGEWQNDVGAAS
                     SIYEEYYQKLKAGR"
     gene            complement(3492..4313)
                     /gene="cobB"
                     /locus_tag="OQQ19_002031"
     CDS             complement(3492..4313)
                     /gene="cobB"
                     /locus_tag="OQQ19_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent protein deacylase"
                     /protein_id="HCS1803665.1"
                     /translation="MLSRRGHRLSRFRKNKRRLRERLRQRIFFRDKVVPEAMEKPRVL
                     VLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQP
                     KIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQ
                     VLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGH
                     VYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGL"
     gene            complement(4329..5240)
                     /gene="nagK"
                     /locus_tag="OQQ19_002032"
     CDS             complement(4329..5240)
                     /gene="nagK"
                     /locus_tag="OQQ19_002032"
                     /EC_number="2.7.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
                     /protein_id="HCS1803666.1"
                     /translation="MYYGFDIGGTKIALGVFDSGRQLQWEKRVPTPRDSYDAFLDAVC
                     ELVAEADQRFGCRGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRL
                     DNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLIFNGKPITGKSYITGEFGHMRL
                     PVDALTMMGLDFPLRRCGCGQHGCIENYLSGRGFAWLYQHYYHQQLQAPEIIALYNQG
                     DEQARAHVERYLDLLAVCLGNILTIVDPDLVVIGGGLSNFPAITTQLADRLPRHLLPV
                     ARVPRIERARHGDAGGMRGAAFLHLTD"
     gene            complement(5269..6513)
                     /gene="lolE"
                     /locus_tag="OQQ19_002033"
     CDS             complement(5269..6513)
                     /gene="lolE"
                     /locus_tag="OQQ19_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolE"
                     /protein_id="HCS1803667.1"
                     /translation="MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVG
                     LSAMNGFERELNNRILAVVPHGEIEAVNQPWTNWQEALDKVQKVPGIAAAAPYINFTG
                     LVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKV
                     KQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMG
                     SSVSGIALKMTDVFNANKLVRDAGEMTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAM
                     VLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCG
                     LIIGVVVSLQLTPIIERIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSL
                     LASWYPARRASNIDPARVLSGQ"
     gene            complement(6513..7214)
                     /gene="lolD"
                     /locus_tag="OQQ19_002034"
     CDS             complement(6513..7214)
                     /gene="lolD"
                     /locus_tag="OQQ19_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309522.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HCS1803668.1"
                     /translation="MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSVGEGEMMAIVGSS
                     GSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF
                     TALENVAMPLLIGKKKPAEINSRALEMLKAVGLEHRANHRPSELSGGERQRVAIARAL
                     VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM
                     RDGRLTAELSLMGAE"
     gene            complement(7207..8406)
                     /gene="lolC"
                     /locus_tag="OQQ19_002035"
     CDS             complement(7207..8406)
                     /gene="lolC"
                     /locus_tag="OQQ19_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004976588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolC"
                     /protein_id="HCS1803669.1"
                     /translation="MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTV
                     LSVMNGFERELQNNILGLMPQAILSSEHGSINPQQLPETAVKLDGVNRVAPITTGDVV
                     LQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGD
                     QIRMMVPSASQFTPMGRIPSQRLFNVIGTFAANSEVDGNEMLVNIEDASRLMRYPAGN
                     ITGWRLWLDEPLKVDSLSQQKLPEDSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVA
                     VAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMIFMVQGASAGIIGAILGAALGA
                     LLASQLNNLMPIIGVLLDGAALPMAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQP
                     AEALRYE"
     gene            8668..9741
                     /locus_tag="OQQ19_002036"
     CDS             8668..9741
                     /locus_tag="OQQ19_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HCS1803670.1"
                     /translation="MKQKELWINQIKGLCICPVVIYHSVITFYPHMTTFPHPLSEVLS
                     KCWIYFNLYLAPFRMPVFFFISGYLIRRYIDSVPWGNCLDKRIWNIFWVLALWGVVQW
                     LALSALNQWLAPERDLSNASNAAYADSTGEFLHGMITASTSLWYLYALIVYFVVCKIF
                     SRLALPLFALFVLLSVAVNFVPTPWWGMNSVIRNLPYYSLGAWFGATIMTCVKEVPLR
                     RHLLMASLLTVLAVGAWLFTISLLLSLVSIVVIMKLFYQYEQRFGMRSTSLLNVIGSN
                     TIAIYTTHRILVEIFSLTLLAQMNAARWSPQVELTLLLVYPFVSLFICTVAGLLVRKL
                     SQRAFSDLLFSPPSLPAAVSYSR"
     gene            9869..13315
                     /gene="mfd"
                     /locus_tag="OQQ19_002037"
     CDS             9869..13315
                     /gene="mfd"
                     /locus_tag="OQQ19_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HCS1803671.1"
                     /translation="MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVL
                     IAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ
                     RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHG
                     EYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFP
                     TDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF
                     PANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNW
                     PRVQLKTKHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESE
                     GRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDKVRNLALICESDLL
                     GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEY
                     LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAA
                     ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDR
                     LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM
                     ISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE
                     RIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVV
                     REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND
                     FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL
                     LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF
                     SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI
                     ASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQKLGIRKLEGNEKGGVIE
                     FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENA
                     IA"
     gene            13459..14421
                     /gene="ldtC"
                     /locus_tag="OQQ19_002038"
     CDS             13459..14421
                     /gene="ldtC"
                     /locus_tag="OQQ19_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase LdtC"
                     /protein_id="HCS1803672.1"
                     /translation="MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGEN
                     KFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPRE
                     GIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTAN
                     TRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCI
                     RLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPI
                     TLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL"
     gene            complement(14504..14761)
                     /gene="bhsA"
                     /locus_tag="OQQ19_002039"
     CDS             complement(14504..14761)
                     /gene="bhsA"
                     /locus_tag="OQQ19_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple stress resistance protein BhsA"
                     /protein_id="HCS1803673.1"
                     /translation="MKNVKTLIAAAILSSMSFASFAAVEVQSTPEGQQKVGTISAKAG
                     TNLGSLEEQLAQKADEMGAKSFRITSVTGPNTLHGTAVIYK"
     gene            15002..15634
                     /gene="comR"
                     /locus_tag="OQQ19_002040"
     CDS             15002..15634
                     /gene="comR"
                     /locus_tag="OQQ19_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family copper-responsive transcriptional
                     repressor ComR"
                     /protein_id="HCS1803674.1"
                     /translation="MATDSTQCVKKSRGRPKVFDRDAALDKAMKLFWQHGYEATSLAD
                     LVEATGAKAPTLYAEFTNKEGLFRAVLDRYIDRFAAKHEAQLFCEEKSVESALADYFA
                     AIANCFTSKDTPAGCFMINNCTTLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGE
                     IPTHCDVTHLAEFLNCIIQGMSISAREGASLEKLMQIAGTTLRLWPELVK"
     gene            complement(15696..16235)
                     /locus_tag="OQQ19_002041"
     CDS             complement(15696..16235)
                     /locus_tag="OQQ19_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HCS1803675.1"
                     /translation="MNKSMLAGIGIGVAAALGVAAVASLNVFERGPQYAQVVSATPIK
                     ETVKTPRQECRNVTVTHRRPVQDENRITGSVLGAVAGGVIGHQFGGGRGKDVATVVGA
                     LGGGYAGNQIQGSLQESDTYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDRD
                     PGTQIPLDSNGQLILNNKV"
     gene            complement(16462..17766)
                     /gene="ndh"
                     /locus_tag="OQQ19_002042"
     CDS             complement(16462..17766)
                     /gene="ndh"
                     /locus_tag="OQQ19_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017384716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone dehydrogenase"
                     /protein_id="HCS1803676.1"
                     /translation="MTTPLKKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHS
                     HLWKPLLHEVATGSLDEGVDALSYLAHARNHGFQFQLGSVIDIDREAKTITIAELRDE
                     KGELLVPERKIAYDTLVMALGSTSNDFNTPGVKENCIFLDNPHQARRFHQEMLNLFLK
                     YSANLGANGKVNIAIVGGGATGVELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGE
                     RILPALPPRISAAAHSELTKLGVRVLTQTMVTSADEGGLHTKDGEYIEADLMVWAAGI
                     KAPDFLKDIGGLETNRINQLVVEPTLQTTHDPDIYAIGDCASCTRPEGGFVPPRAQAA
                     HQMATCAMNNILAQINGKPLKNYQYKDHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRI
                     ARFVYISLYRMHQIALHGYFKTGLMMLVGSINRVIRPRLKLH"
     gene            complement(18166..18708)
                     /locus_tag="OQQ19_002043"
     CDS             complement(18166..18708)
                     /locus_tag="OQQ19_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS1803677.1"
                     /translation="MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQ
                     HLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVIFNPNLFPYENMEGKI
                     DRPEEYADIATKCVTNFREKNRDRCLVILSRNDEALNSQRTSEELHHYYEIVWDEEQT
                     HKFKNISPHLQRIKAFKTLG"
     gene            complement(18731..19756)
                     /gene="nagZ"
                     /locus_tag="OQQ19_002044"
     CDS             complement(18731..19756)
                     /gene="nagZ"
                     /locus_tag="OQQ19_002044"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HCS1803678.1"
                     /translation="MGPVMLDVEGYELDAEEREILAHPLVGGLILFTRNYHDPAQLRE
                     LVRQIRAASRNHLVVAVDQEGGRVQRFREGFTRLPAAQSFAALLGMEEGGKLAQEAGW
                     LMASEMIAMDIDISFAPVLDVGHISAAIGERSYHADPEKALAIASRFIDGMHEAGMKT
                     TGKHFPGHGAVTADSHKETPCDPRPQAEIRAKDMSVFSTLIRENKLDAIMPAHVIYSD
                     VDPRPASGSSYWLKTVLRQELCFDGVIFSDDLSMEGAAIMGSYAERGQASLDAGCDMI
                     LVCNNRKGAVSVLDNLSPIKAERVTRLYHKGSFSRQELMDSARWKASSTRLNQLHERW
                     QEEKAGH"
     gene            complement(19767..20591)
                     /gene="thiK"
                     /locus_tag="OQQ19_002045"
     CDS             complement(19767..20591)
                     /gene="thiK"
                     /locus_tag="OQQ19_002045"
                     /EC_number="2.7.1.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine kinase"
                     /protein_id="HCS1803679.1"
                     /translation="MPFRSNNPITRDELLSRFFPQFHPVTTFNSGLSGGSFLIEHQGQ
                     RFVVRQPHDPDAPQSAFLRQYRALSQLPASIAPKPHLYLRDWMVVDYLPGAVKTYLPD
                     TNELAGLLYYLHQQPRFGWRITLLPLLELYWQQSDPARRTVGWLRMLKRLRKAREPRP
                     LRLSPLHMDVHAGNLVHSASGLKLIDWEYAGDGDTALELAAVWVENTEQHRQLVNDYA
                     TRAKIYPAQLWRQVRRWFPWLLMLKAGWFEYRWRQTGDQQFIRLADDTWRQLLIKQ"
     gene            complement(20575..21213)
                     /gene="lpoB"
                     /locus_tag="OQQ19_002046"
     CDS             complement(20575..21213)
                     /gene="lpoB"
                     /locus_tag="OQQ19_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HCS1803680.1"
                     /translation="MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQ
                     PVPTVPSVPTIPQQPGPIEHEDRTAPPAPHIRHYDWNGAMQPIVSKMLGADGVTAGSV
                     LLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGT
                     RSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQ"
     gene            complement(21227..21604)
                     /locus_tag="OQQ19_002047"
     CDS             complement(21227..21604)
                     /locus_tag="OQQ19_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HCS1803681.1"
                     /translation="MRKGCFGLVSLVLLLLVGCRSHPEIPVNDEQSLVMESSLLAAGI
                     SAEKPVLSTSDIQPSASSTLYNERQKPVTVHYRFYWYDARGLEMHPLERPRSVTIPAH
                     SAVTLYGSANFLGAHKVRLYLYL"
     gene            complement(21607..21966)
                     /gene="hinT"
                     /locus_tag="OQQ19_002048"
     CDS             complement(21607..21966)
                     /gene="hinT"
                     /locus_tag="OQQ19_002048"
                     /EC_number="3.9.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415621.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine nucleoside phosphoramidase"
                     /protein_id="HCS1803682.1"
                     /translation="MAEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIP
                     NILIPTVNDVSAEHEQALGRMITVVAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHM
                     HLLGGRPLGPMLAHKGL"
BASE COUNT         5601 a         5899 c         5574 g         5392 t
ORIGIN      
        1 cgacgagtgg aaaccaaaac ggttcagtct cccaataaca aacactaccc tggtgaaata
       61 cggaaaacta ggatacatcg ttccaagacc acaaaaaatt cgtgggcgtt ggctgataga
      121 tcgccgagca gtatttgttg ggccaggtga aacgggaatt gcgccggaaa ttcatactgg
      181 cgatgatgat gcactgaagg agattttaac tcatgtcacc gaggccacga aaaaacagca
      241 ctgacgtagc cggtctttac gaaaagtttg atcgcagaac tggcagagtt tactaccagt
      301 ataaaaatcc tgtgactgga aaatttcacg gactcggaac agacaaaggt aaggcagaaa
      361 aaatcgcttc cacagccaat cagcgaatag ctgcagcaga agctgaatat ttcatgcgca
      421 aaattgatga aagtccgtca gcaacaaaac gtcggggtat cagattaaag gcatgggttg
      481 atcgatatct gaaaatacag gacacgcgac tgaaaaatgg agatattgca gctacaactc
      541 acaaagaaaa aactcgaatg gctgcatacc tggtttcccg tctgggaaac cacccattga
      601 aagaactgga agtaagagac tttgcattaa tactggatga gtggctggat aaagacatgg
      661 tcagcacagc gagagtaaat cgtggattat gggttgatat ttataaagaa gcacagcatg
      721 caggggaagt tcctcctgga tggaatcctc cggaggctac ccgtaaaccg atccctaaag
      781 taaccagagc caggctcacc atggaagact ggcaaaaaat ttacaatgca acgcctgaaa
      841 aacactttat ccgtaacgca atgcttcttg cgattgttac tggtcagcgc cgtgatgaca
      901 tttgccacat gcgtttttca gatgtgtgga acgaacactt gcatatcacc cagggaaaaa
      961 ccggaatgcg tctggcgtta ccgcttacac tacgctgtga tgccattggg ataacgttaa
     1021 aagaagttat tgatgggtgc cgagacagaa tattaagtcc atatctaatc catagtcggc
     1081 accagaaaca accgaagccg atgagtaaag acaacctgag cgactacttt gccaaagcac
     1141 gggatctggc tgggataatt ccaccagcag gaaaaactcc gccaacattt catgaacaac
     1201 gctctctatc agaacggctg taccgtgcac agggtatcga tacaaaaaca ttactaggac
     1261 ataaagtcca ggcaaccacc gatcgctata acgatactcg aggtcaggaa tgggtttaag
     1321 ctggttattt gacaaacacc atatggaata tccgtcacca tctcaggaaa aaagtgttgt
     1381 aaaatgcgtg gcctagtttt ggggaaacgt tttggagaga ttttggagaa aggaaaaaat
     1441 tgaataaatt caaaatcctg aaagtgctcc accttatgaa taagaaggtg gaactcgaat
     1501 gatcggtcga ctgcttcgcg gcggttttat gaccgctatc tacgcgtacc tgtatatccc
     1561 aatcattatt ttgattgtga actcctttaa cagctcgcgc tttggcatca actggcaggg
     1621 ttttaccacc aaatggtata gcctgctgat gaacaacgac agcctgttac aggcagcgca
     1681 gcattcacta acaatggcgg tgttttcggc gacgtttgct acgcttatcg gttcactgac
     1741 ggcagttgcg ctgtaccgtt atcgctttcg cggtaagccg ttcgttagcg gaatgctgtt
     1801 tgtggtaatg atatcaccag atatcgtgat ggcaatttcg ctgctggtgc tgtttatgct
     1861 gctgggtatt cagcttggct tctggtcgct gctgttctcg catatcacct tctgcctgcc
     1921 atttgtggtg gtgacggtgt attcgcgcct gaaaggtttt gacgtgcgga tgctggaagc
     1981 ggcgaaagat ctcggtgcca gcgaatttac aattctgcga aaaatcatac tgccactggc
     2041 aatgccagcg gtggcagcgg gctgggtgtt aagctttacc ctgtcgatgg acgatgtggt
     2101 agtttcttcg ttcgtcaccg gaccaagtta tgaaattctg ccgttaaaaa tttattcgat
     2161 ggtcaaagtc ggcgtatcgc cggaagttaa cgcgctggca accatattac tggtgctgtc
     2221 gctggtgatg gttattgcca gtcagcttat tgctcgtgat aaaacgaaag gtaacacagg
     2281 ggacgttaaa tgaaaaaatg gtcacgccac ctgctcgcgg cgggtgctct ggcactgggc
     2341 atgagcgccg ctcacgccga tgacaacaac acgctgtatt tctacaactg gaccgagtac
     2401 gtgccgccag gactgcttga acagttcacc aaagaaacct gtattaaggt tatctattcg
     2461 acttacgagt cgaacgaaac catgtacgcc aagctgaaaa cgtacaaaga cggtgcgtat
     2521 gacctggtgg ttccttcaac ctattacgtc gataaaatgc gtaaagaagg gatgatccag
     2581 aagatcgaca agtcgaagtt aacgaacttc agcaatctcg atccagacat gctcaacaag
     2641 ccttttgacc cgaataacga ctactccatt ccgtatatct ggggggcgac ggcgattggt
     2701 gttaacggtg atgcggtgga tccgaaatct gtcaccagct gggccgatct gtggaagcca
     2761 gagtacaaag gcagcctgct gttgaccgac gatgcccgtg aagtgttcca gatggcgctg
     2821 cgtaagctgg gctattccgg taacaccacc gatccgaaag agattgaagc tgcatataac
     2881 gagctgaaaa aactgatgcc aaacgtcgca gcgtttaact ccgataaccc ggctaacccg
     2941 tacatggaag gcgaagttaa cctcggcatg atctggaacg gttctgcttt cgttgcacgc
     3001 caggcgggta cgcctattga cgtggtgtgg ccgaaagaag gcggcatatt ctggatggac
     3061 agcctggcga tcccggcaaa tgccaaaaac aaagaaggcg cgctgaaatt gatcaacttc
     3121 ctgctgcgcc cggatgtggc aaaacaggtt gctgaaacta tcggttatcc aacgccaaac
     3181 cttgcggcgc gtaagctgtt aagtccagaa gtggcgaacg ataaaacgct ctacccggat
     3241 gctgaaacca ttaaaaatgg cgaatggcag aatgacgttg gcgcagccag cagcatttat
     3301 gaagagtatt atcagaagct gaaagcagga cgttaattca gcaagcgggc ggtggtatta
     3361 ccgcccgttt tttatttagc aaggatgtgg ctaatgagtc aggacagtag agttttatcc
     3421 gactctttcg tcggtattgt ggtccgctcg taggcctgat aagcgtagcg catcaggcaa
     3481 tgcttcctgc tttataatcc cttcagcaac ttttcaacaa actcaggcac cacctggctt
     3541 gccgggccgt aatatttctc ggcaaattca ttaccgacct gacttggttc gagattcagt
     3601 tccacggtgt gcgcgccatg cagtttcgct tcgtgaacaa acccagccgc cggataaaca
     3661 tgcccggaag taccaatggc aatgaaaata tcagccatcg acaacgccat ataaatttca
     3721 tccatgccga gtggcatttc gccaaaccaa acgacgtgcg ggcgcaaggg tgccgggaac
     3781 tggcaacaat ggcatttatc ttctggcgta acgtctccgg tccagtcgag aacctgacca
     3841 ctttgcgaac aacgaacttt cagcaattcc ccatgcatat gaatgacatt ggtattacct
     3901 gcgcgttcat gcaggttgtc tatattctgc gttaccagca aaaagcgatc gccgagagcg
     3961 tcttgcagtt tagccagcgc aagatgcgcg gcgttaggct gaatttttgg ctgctgcagc
     4021 tgtcgacgac gggcgttata aaacgcttgc accagttcag gatcgcgatc gaaaccttcc
     4081 ggcgttgcca catcttcaac ccgatgttct tcccacaggc catctgcggc gcgaaaggta
     4141 cgaatacctg attccgcaga aattcctgcc cctgtcagta cgagtactct tggtttttcc
     4201 attgcttccg gcaccacttt atctctgaaa aaaatacgct gacgcaaacg ctcgcgcagg
     4261 cggcgtttat ttttacgaaa acgacttaac cgatgacccc gacgcgacag catagcaacc
     4321 tctgttgttt aatcggttag atgtaggaag gccgcaccac gcattcctcc cgcatcaccg
     4381 tggcgcgcgc gttcaatgcg cggaacacga gctacaggta agagatgacg aggcagcctg
     4441 tccgccagtt gcgttgtgat tgccgggaaa ttcgataagc caccaccaat gacgaccagg
     4501 tcagggtcaa caatggtcag gatatttccc agacaaaccg ctaataaatc cagataacgc
     4561 tcaacgtgcg cccttgcctg ctcatcgcct tgattataaa gcgcaataat ttcgggagcc
     4621 tgcaactgtt gatgataata gtgttgatac agccacgcaa aaccgcgacc agacagataa
     4681 ttctcaatgc agccatgctg accacagccg cagcggcgta acgggaaatc caaccccatc
     4741 atggttaacg catcaaccgg cagacgcata tggccaaact cgccggtaat gtagctttta
     4801 ccggtaatcg gtttgccgtt gaaaatcagc ccaccgccaa cgccggtacc aagaatcaac
     4861 cccatcacca gtggatattg cgtaaattca tcatcccagg cttctgaaag ggcaaaacag
     4921 ttggcatcgt tatcaaggcg tacatcgcga tcaagacgtg cgctcaggtc ggcacgcagc
     4981 ggtttaccgc tggcagcggg gacattggcg gcatacagcg taccatcttc tgtttccggc
     5041 attcccggta taccaatgcc gacagaacct ctacagccaa aacgttgatc agcttcggct
     5101 accagctcgc acactgcatc taaaaatgcg tcatagctgt cacgcggtgt cggcacccgc
     5161 ttttcccact gcaactgccg accgctatca aacacgccaa gcgcaatttt tgttccacca
     5221 atatcaaacc cgtaatacat tgccgctcct tgttttaatg tactgccttt actggccgct
     5281 aaggactcgc gcagggtcaa tattactggc gcgccgcgcc ggataccaac ttgccaaaag
     5341 actcagcaac aatgctgtga ccagtacgta gaagacgtcc agccagtgca attccgatgg
     5401 caggaagtca ataaaataga tatcgctgga gaggaactga tgaccgatca gcttttcaat
     5461 ccgctcaata atcggggtaa gttgcagtga aacaactacg ccgataatca gcccacacag
     5521 gctgccgaac agccctgcca gcaatccata ccagacaaag atggcgcgaa ttaaaccatc
     5581 tttcgccccc agcgttctta atactgcgat atcgccactc ttatctttca ccgccatcac
     5641 taaggtggag acgatgttga aacaggccac gccaatcacc agtaccatcg ccagatacat
     5701 aatggcgcgg atcatctgga tatcgcgata catatagccg taagtaccaa tccagctttt
     5761 aatataaaca tagctgttgg tcatttcacc cgcatcgcgt accagcttat tggcgttgaa
     5821 aacatccgtc attttaaggg caatacctga cacgctggaa cccatatcaa gatattgttg
     5881 ggcatccgcc agcgggatca tggcaaaact gtgatcgagt tggccactca actgcaaaat
     5941 acccgcaacg tgcaaacgca cacgttttgg ctgcatcagt ttatgctcag gattcgagtt
     6001 ggggatcatg atcgacaccc aatcgccctg cttcactttc agcgcatccg ccacgccttt
     6061 gccgatgata atttgctgtt cgcccgcttt aaaattgcgc cacgcatccc cctgaacaaa
     6121 cgagggtaat gcgctcagac gctgttcctg ttgtgggtta acgcccttca cctggattgc
     6181 gcgcagattc gctccacttt ccaccagccc ggtgaaattg atatacggcg cagcggcggc
     6241 aatacccggc actttctgca ctttatccag tgcttcctgc cagttagtcc atggctgatt
     6301 taccgcttcg atttcaccat gcggcaccac cgccagaatg cggttattca gttcgcgttc
     6361 aaagccgttc atcgcgctta agccgacgat caataccgcc acaccgaggg caatgccaat
     6421 ggtagaaatg acggagatca gcgacaccat gccgccgcgc cgccgtccgc gactaaaacg
     6481 caggccaatt aataacgata aaggcatcgc cattactccg cccccatcag gctcagttcc
     6541 gccgtcagac gtccatcacg catttctaac tggcggctca tacgtttcgc cagttgcagg
     6601 tcgtgagtaa ccaccaggaa ggcggtgccc tgcaagcgat tcaattcccc aagcaactgg
     6661 aagatgctgt cggcgttacg cgcatcgagg ttaccggtag gctcatccgc cagtaccaga
     6721 cgcggattat tgaccagcgc acgggcaatc gctacacgct ggcgttcgcc gccagaaagt
     6781 tcagatgggc ggtgattcgc acgatgctcc agccccaccg cttttaacat ctccagtgca
     6841 cggctgttga tttcagcggg ctttttcttg ccaatcagca gcggcatagc cacgttttcc
     6901 agggcggtaa aatccggcag caggtggtga aactgataaa taaagcccag tttctggttg
     6961 cgcagttctg cttttgctgc cgacgacagt ttgctcatcg gttgaccgtt aaagatcaca
     7021 tcgccggagg ttggcgtatc cagtccgccc agcaggtgca gcaaggtgct tttaccggaa
     7081 ccagagctac cgacgatcgc catcatttca ccttcgccga cgctgaaact gacattgtgc
     7141 agtacatcgg tttgcacact gccttcctga tagcgtttgc acaggttgtc gcattgcaac
     7201 aggatcttat tcataacgta aagcctcagc gggttgtgtg gcggcagcgc gccatgaagg
     7261 gtaaagcgta gacagcagcg cgatagccat cgccaccagc gcaataacaa tgacctgtaa
     7321 aggttcgata gccatcggca gcgccgcgcc atcaagcagg acgccgatta ttggcatcag
     7381 attatttaac tggctggcaa gcagtgcgcc aagcgccgct ccgaggatcg caccgataat
     7441 cccggcgctg gccccttgca ccataaagat catcatgatt tgtcgcggag ttaagccttg
     7501 cgtttgcagg atcgctactt cgccctgctt ctccatcacc atcagcccca gcgaggtaat
     7561 aatgttaaac gccgcaacgg cgacaatcag gctcagcagt aaacccatca tatttttttc
     7621 catgcgtacg gcctggaaca actcgccttt acgatcacgc cagtcctgcc atttgctgtc
     7681 ttcaggcagt ttttgctgac ttaatgagtc gactttcagc ggctcatcca gccacaaacg
     7741 ccagccggta atattgcctg ccggataacg catcagacgc gaggcatcct caatattcac
     7801 cagcatttca ttgccatcga cttcactgtt ggcggcgaaa gtgccaatca cattgaacag
     7861 gcgctgactt ggaatacgcc ccatcggcgt gaactggctg gcagatggta ccatcatgcg
     7921 gatttgatca ccgcgattaa cgcctagctg tgaggcaagt tgttcgccga ggatgacatt
     7981 atatttcccc ggctcgaggt cagtttgttt cacattgacc agatacggcg ttagtggatc
     8041 tttttgcgcc ggatcgatac ccagcatcac cccgaccgcc acgctgcgcg cgctttgcag
     8101 taccacatca ccggtagtaa taggtgcgac gcgattaacg ccgtccagtt tgactgccgt
     8161 ttccgggagt tgctgcgggt taatagagcc atgctcagaa gagagaattg cctgtggcat
     8221 caggccaagg atgttgtttt gcagctcgcg ctcaaagccg ttcatcactg acaatactgt
     8281 gaccagcgcc atcaccccga gggtaatgcc gatggtagaa agccaggaga cgaaacgacc
     8341 gaagcgatcc gctgcacgcc cacgcatgta acgcaggcca ataaatagag cgacaggttg
     8401 gtacatgaaa tccgtctggt tgctgtagca aagacacgag tatataagcg aaagcaagat
     8461 gggtaaacgt ctgaactgta agtgatcgtc agggctaatc tgaaaagccc ccgtaaatca
     8521 atcggctaaa ttgccatgtt ttatcatcaa tcttgccgcc tgatcttaat ctgaaaaatc
     8581 atccaataca gacagatacc cattacacct cgggtcataa cccgcaggat caaccgcatg
     8641 taaattaaaa aagagcgtgt tgtcctgatg aaacaaaaag agctatggat taaccagatc
     8701 aaagggttat gtatttgtcc ggtggtgatt tatcactcgg tcattacctt ttatccgcat
     8761 atgaccactt ttccgcatcc gttatcggaa gtcctgagca aatgctggat ctatttcaat
     8821 ctttaccttg caccctttcg tatgccggtt tttttcttta tatccggcta tttgattcgc
     8881 cgctatatcg acagcgtacc gtggggaaat tgtctcgata aacggatctg gaacatcttc
     8941 tgggtgctgg cgctttgggg cgtggtgcag tggctggcgt taagtgcgct gaaccagtgg
     9001 ctggcacctg agcgcgattt aagcaatgcc tccaatgccg cttatgccga ttccaccggt
     9061 gagttcctgc acgggatgat caccgccagc accagcttgt ggtatctgta tgcgttaatt
     9121 gtctatttcg tggtatgtaa aatttttagc cgtctggcgc tgccactatt cgccttgttt
     9181 gtactgctga gtgtggcggt taatttcgtt cccacgccgt ggtggggaat gaacagtgtg
     9241 atccgcaatt tgccttatta cagccttggc gcatggtttg gcgcaacaat aatgacctgt
     9301 gttaaagagg taccgttgcg ccgccatctg ctgatggctt ctttgcttac cgttctggcg
     9361 gtcggtgcct ggttgtttac tatctcgctg ctgttgtcgc tggtatcgat tgtggtgatc
     9421 atgaagctgt tttatcagta cgagcaacga ttcggtatgc gctccaccag cctgctgaat
     9481 gtgattggct ccaacaccat tgctatctac accacccatc gcattctggt tgaaatattc
     9541 agcttaactc tgcttgcgca aatgaacgca gcacgctggt cgccgcaagt cgaactgaca
     9601 ctcctgctgg tttatccctt tgtcagtttg ttcatctgta ctgttgcggg cttgctggta
     9661 agaaaacttt cacagcgtgc attcagcgat ctgttgttct ccccgccttc actgcccgct
     9721 gccgtcagtt actcccgcta agccatcgcc ccagccgggg cgattcaatt tgctaaacca
     9781 tgtcgattac ggataatgaa cagcattgct tatcagagat atgcccccat atgttgaggc
     9841 atatcctaac gagaatctga caaccgttat gcctgaacaa tatcgttata cgctgcccgt
     9901 caaagcgggt gagcagcgtc tgctgggcga gttaaccggc gcagcctgtg caacgctggt
     9961 agcggaaatt gccgaacgtc acgccggtcc ggtggtactc attgcaccag atatgcaaaa
    10021 tgctctgcgt ttgcatgatg aaatcagtca gttcaccgat cagatggtga tgaatctggc
    10081 ggactgggaa actcttccct acgacagctt ttcgcctcat caggacatta tctcctcgcg
    10141 cctttccacc ctttaccagc taccgacgat gcagcgtggc gtactgattg ttccggtgaa
    10201 tacgcttatg cagcgcgttt gcccacacag ttttctccac ggtcatgcgc tggtgatgaa
    10261 aaaaggtcag cgcctgtcac gagatgcatt acgaacccaa ctggacagcg ccggttatcg
    10321 ccatgttgac caggtgatgg agcacggcga atacgccacg cgcggcgcgt tgctggatct
    10381 cttcccgatg gggagtgagc tgccttatcg tcttgatttc tttgatgatg aaatcgacag
    10441 cctgcgggtg tttgacgtcg acagccagcg cacgctggag gaagtagaag cgatcaatct
    10501 gctgcccgcg cacgaatttc cgaccgataa agcggcaatt gaactgttcc gcagccagtg
    10561 gcgcgatacc ttcgaagtga agcgcgatcc ggaacatatt taccagcaag tgagtaaagg
    10621 cacattacct gccgggatcg agtactggca gccattgttc ttcagcgaac cactgccgcc
    10681 gctgttcagt tatttccctg ccaatacctt gctcgtgaat actggcgatc tggaaaccag
    10741 tgccgaacgt ttccaggctg acacgctggc gcgttttgag aatcgcggcg tcgatccgat
    10801 gcgcccgctg ttgccaccac aatcgctctg gctgcgggtg gacgagctct tctcagagct
    10861 gaaaaactgg ccccgggtgc agctaaaaac taaacattta ccgacaaaag ccgcgaatgc
    10921 caatttaggt ttccagaaac tgccagacct agccgttcag gcgcaacaaa aagcgccgct
    10981 ggatgcgctg cgtaagttcc tcgagacttt cgacggtccg gtggtgttct cggtagaaag
    11041 tgaaggtcgc cgtgaagcgc tgggtgaact gctcgcacga attaaaattg ctccgcaacg
    11101 cattatgcgt cttgatgaag ccagcgaccg tgggcgttat ctgatgattg gcgctgccga
    11161 acatggtttt gtcgataagg tgcgtaatct ggcgctgatc tgcgaaagcg atctgctcgg
    11221 tgaacgtgtt gcccgccgtc gtcaggattc tcgccgcacc atcaaccccg atacactgat
    11281 ccgtaacctt gcggagctgc atattggtca gccggtggtc catctggagc acggtgtcgg
    11341 gcgctatgcc ggaatgacca cgctcgaagc gggcggcatt actggcgagt atttgatgct
    11401 cacctatgcc aacgacgcca aactgtatgt tccggtgtcg tcactgcatc tgattagccg
    11461 ttacgcaggt ggcgcggaag aaaacgcccc gctgcataaa cttggcggcg atgcgtggtc
    11521 acgcgcgcgg cagaaagcgg cggaaaaagt gcgtgatgtg gcggcggaat tgctggatat
    11581 ctacgcgcaa cgcgccgcca aagagggctt cgcgtttaaa cacgatcgtg agcagtatca
    11641 gttgttctgc gacagcttcc cgtttgaaac cacgccggat caggcgcagg ccattaatgc
    11701 ggtacttagc gacatgtgtc agccgctggc aatggatcgt ctggtgtgcg gcgatgttgg
    11761 ctttggtaaa acagaagtgg cgatgcgcgc cgctttcctg gcagtagata accacaagca
    11821 ggtggcggtg ttggtgccta ccacccttct cgcgcagcag cattacgaca acttccgcga
    11881 ccgtttcgcc aactggccgg tacgtatcga aatgatctcc cgtttccgca gcgccaaaga
    11941 gcagacgcaa atccttgcgg aagtggcgga agggaaaatc gatattctga tcggtacgca
    12001 caaactgctg caaagtgacg tcaagtttaa agatttaggc ctgctgattg tcgatgaaga
    12061 acaccgcttc ggggtgcgtc ataaagagcg cattaaagcg atgcgcgcga acgtggatat
    12121 tctgacgctt actgcaacgc cgatcccacg cacgctgaat atggcaatga gcggaatgcg
    12181 tgacctgtcg attatcgcca cgccgcccgc ccgtcgtctg gcagttaaaa cctttgtccg
    12241 tgagtatgac agcctggtgg tccgggaggc gatcctgcgt gaaattttgc gcggggggca
    12301 ggtttattat ctctacaatg atgtggaaaa catccagaaa gctgccgaac ggctggcaga
    12361 actggtgcca gaagcgcgga tcgccatcgg tcacgggcag atgcgcgagc gcgaactgga
    12421 acgggtgatg aatgatttcc atcatcaacg tttcaacgtg ctggtttgta caaccattat
    12481 cgaaaccggg atcgacatcc cgacagccaa caccattatc attgaacgcg cggatcactt
    12541 cggtctggcg cagctgcacc agttacgcgg tcgcgtcgga cgttcacatc atcaggcata
    12601 tgcatggctg ctgacgccgc atccaaaagc gatgactacc gatgcacaaa aacgtcttga
    12661 agcgattgcc tcgctggaag atctcggtgc aggctttgcg ctggcaacgc acgatctgga
    12721 gatccgcggc gcgggtgaac tgcttggcga agaacaaagt ggctcaatgg aaaccatcgg
    12781 tttctcgctg tatatggagt tgctggaaaa cgccgtcgat gcactgaaag ccggacgcga
    12841 gccgtcgctg gaagatctca ccagccagca aacagaagtc gagctgcgga tgccgtcgct
    12901 attgccagat gatttcattc ctgacgtgaa tacgcgtttg tcgttctata aacgtattgc
    12961 cagcgccaaa acggaaaacg aactggaaga gatcaaagtc gagcttatcg atcgcttcgg
    13021 cctgctgccg gatccggcgc gtaccctgct ggatgttgcc cgtctgcgcc agcaagcgca
    13081 gaaactgggg atcaggaagc tggaaggtaa tgagaaaggc ggggtgatcg aatttgccga
    13141 gaagaatcac gttaatccgg cctggttgat tggtttgctg caaaaacagc cgcagcatta
    13201 ccgccttgat ggtccgacgc gcctgaaatt tattcaggat ttgagtgagc ggaaaacgcg
    13261 tatcgaatgg gtacgccagt ttatgcgtga actggaagag aacgcgatcg cttaatggta
    13321 aatcgggggc gtttctgcgc ccccatcggc aacatttaca aattctttgc acttccctgc
    13381 actatccgac actgtcacca tccataattc aggcttatct gtttattaca ataaccttat
    13441 atttattatg gatttttggt gatgatcaaa acgcgttttt ctcgctggct aacgtttttt
    13501 acgttcgccg ctgccgtggc gctggcgcta ccggcaaaag ccaacacctg gccgctgccg
    13561 ccagcgggca gtcgtctggt tggcgaaaac aaatttcatg tggtggaaaa tgacggtggt
    13621 tctctggaag ccatcgccaa aaaatataac gtcggctttc tcgctctgtt acaggctaac
    13681 cccggcgttg atccttacgt accgcgcgcg ggcagcgtgt taacgatccc gttgcaaacc
    13741 ctacttccag acgcgccgcg cgaaggcatt gtgatcaaca ttgcggagct gcgtctctat
    13801 tactacccgc cgggtaaaaa ttcggtaacc gtgtatccaa taggtattgg tcagttaggt
    13861 ggtgacacgc tgacaccgac aatggtgacc accgtttcag acaaacgtgc aaacccaacc
    13921 tggacgccaa cggcaaacac ccgcgcccgt tataaagcac agggaattga gttgcctgcg
    13981 gtagtgccgg ctggaccgga taacccaatg ggccatcatg cgattcgtct ggcggcctat
    14041 ggcggcgttt atttgcttca tggtacgaac gccgatttcg gcattggcat gcgggtaagt
    14101 tctggctgta ttcgtctgcg ggatgacgat atcaaaacac tctttagcca ggtcacccca
    14161 ggcaccaaag tgaatatcat caacactccg ataaaagtct ctgccgaacc aaacggtgcg
    14221 cgtctggttg aagtacatca gccgctgtca gagaagattg atgacgatcc gcagctgctg
    14281 ccaattacgc tgaatagcgc aatgcaatca tttaaagatg cagcacaaac tgacgctgaa
    14341 gtgatgcaac atgtgatgga tgtccgttcc gggatgccgg tggatgtccg ccgtcatcaa
    14401 gtgagcccac aaactctgta aatcctggat aaaaaaaatc cccgcgacac ggcatgtcgc
    14461 ggggaaaaaa tcagcagtag caggcattaa tgagggttaa tgcttattta taaattactg
    14521 ctgttccatg gagggtattc ggaccggtta cagaagtaat acggaaagat tttgcaccca
    14581 tctcatccgc tttttgcgcc agctgctctt ccagcgatcc cagatttgtc cccgctttag
    14641 cactgattgt accgactttt tgttggcctt ctggcgttga ctgaacttcg acagccgcaa
    14701 agctggcaaa tgacatggag cttaaaatcg ccgcagcgat gagggttttt acgtttttca
    14761 taatagtggc cttatgcaga tgaatgacgt cgcaagcaat tacttaacga tcgataacta
    14821 aatgacagat gtgatctgga tcacatacaa gatatttttt ataacaatca ttaattaatt
    14881 taaaaatctt taaatttcag ttaaatagaa agcaattatt tttatgggat ctggactggt
    14941 gaacggaggt gattattttt ataataatct ttcattcaca gtcaccaggt acaacggcat
    15001 catggcaact gactcaacac aatgtgtaaa aaaaagccgt ggccgcccaa aagtgttcga
    15061 cagggatgcc gcgcttgata aggccatgaa attgttctgg caacacggtt atgaagcgac
    15121 ttctcttgcg gacctcgtcg aagcgaccgg agccaaagcg cccacgctat acgcggaatt
    15181 taccaacaaa gaggggttat ttcgtgccgt tctcgaccgc tatatcgatc gttttgccgc
    15241 taagcatgaa gcacagctgt tttgtgaaga gaaaagcgtg gagtctgcgc tggctgacta
    15301 ttttgctgcc atcgccaact gctttaccag caaagacacc ccggcaggct gcttcatgat
    15361 caacaactgc accaccctct ccccagattc aggagatatc gccaatacgt tgaaatcacg
    15421 ccatgcgatg caagagcgca ctttgcagca gtttttatgt caacgacaag cgcgcgggga
    15481 aatcccgacc cactgtgacg tgacacatct ggcagaattc cttaattgta ttattcaggg
    15541 gatgtcgatc agcgcacgcg aaggtgcatc gctggaaaaa ctaatgcaga ttgccggaac
    15601 gactttgcgt ttatggcccg aactggtgaa ataagtcgca aaaaaagccc ctcagcctga
    15661 gcgaatgagg ggccaaattg cagagtacag ccttgttata ctttgttatt caaaatcagt
    15721 tgcccattac tatctagcgg gatctgcgta cccggatcgc ggtccatgcg gattttgccc
    15781 tgctgatcgc caatcttata ggtcacatca taaccgagca ttttttctga cttgtcatac
    15841 accgttttac aacgctgttg cgtagtcgtg taagtatcgc tttcctggag agagccctgg
    15901 atctggttac cggcatatcc accacccagc gcccccacaa cagtggcgac atctttaccg
    15961 cgaccaccgc caaactgatg ccctatcacg ccgccagcaa cagcgccgag caccgacccg
    16021 gtaatgcgat tttcatcctg caccggtcga cgatgggtca ctgtgacgtt gcgacactcc
    16081 tgacgcggtg ttttaaccgt ttccttgatt ggggttgcag aaacaacctg agcgtattgc
    16141 gggccacgtt caaacacgtt cagactggcc actgccgcta cgcccagcgc agctgcgaca
    16201 ccaatcccga tacccgccaa cattgattta ttcacgggaa cacctccttc tttgcagtta
    16261 tgccaatcat gcaagcgaag gagaaaagca gctatcagac agaagatgaa aagcgcggga
    16321 atggctggaa atacttaatg attcggagga gtctgaagga atgcctgatg cgacgcttaa
    16381 cgcgtcttat caggcctacc gctcgtacca tttgtccagg gcggatgagg cgtttatgcc
    16441 acatccgcca gtgtacgtcg attaatgcaa cttcaaacgc ggacggataa cgcggttaat
    16501 actccccacc agcatcatta atccggtttt aaagtaacca tgcagcgcaa tctgatgcat
    16561 tcggtatagc gagatatata caaagcgcgc aattcgtcct tcaatcatca ttgagccgcg
    16621 cgtcaagtta cccatcaggc taccaacggt ggagaagttc gacagcgata ccagtgaacc
    16681 atgatcttta tactgataat ttttcagcgg cttaccgttt atctgcgcca gaatattgtt
    16741 cattgcgcaa gtcgccatct ggtgtgcagc ctgagcacgc ggcggaacaa agcccccttc
    16801 cggacgcgtg catgacgcgc agtcgccaat agcgtaaatg tctggatcgt gggtggtttg
    16861 cagcgtcggt tccaccacca gctggttgat acggttagtt tcaagaccac cgatatcttt
    16921 caggaagtct ggcgctttga tcccggctgc ccacaccatc agatcagcct caatatattc
    16981 accatcttta gtgtgcaggc cgccttcatc agcactggtg accatggttt gcgtcagcac
    17041 gcgaacgcca agtttcgtta actcactatg ggccgcagca gagatgcgtg gcggtaatgc
    17101 aggcaaaata cgttctcccg cttctactag cgttacgttc agggcttcgt tggtcagacc
    17161 tttataaccg tagctgtgca gttgcttgac cgcgttatgc aactcagcgg agagttctac
    17221 acccgtcgcg ccgccaccga caatcgcaat gttcactttg ccattcgcgc ccaggttggc
    17281 ggagtatttc aggaacagat tcagcatctc ctggtggaag cgacgcgcct ggtgcgggtt
    17341 atcgaggaaa atgcagttct ctttgacgcc tggcgtattg aaatcgttag aggtgctacc
    17401 cagcgccatg accagggtat cataggcgat tttacgttcc ggaaccagca gttcaccttt
    17461 ctcgtcgcgt agttctgcaa tagtgattgt tttcgcttca cgatcaatat caatgacgga
    17521 acccaactgg aactggaaac catgattgcg cgcatgggcc agatagctca acgcatcgac
    17581 gccttcatca agcgagccag tcgccacttc gtgcagcagc ggtttccaca ggtggctgtg
    17641 gttacgatcg accagcgtaa ttttggcttt tttcttacgt cccagcttat gccccagctg
    17701 tgttgccatt tccagcccac cagcaccgcc gccgacaatc acaatctttt tcaatggcgt
    17761 agtcaacgtg acccccttaa atttattaac caattgttaa ttaatggtta ttaacatagc
    17821 tcttaattaa caacaggtta cagcaatgaa aatgttcttc gctattgaga ataacatgaa
    17881 tggtgcattg gtcataccaa aattgatgtt aatcaagttt tgttgctgaa aagataggcg
    17941 actttaccgg gtgagatcaa aaaatagagt ttattgttta ttatttgagc gaatttgtga
    18001 gagtgatata gagtgagggg tgtatgcagg gcgttcggta ggcctgataa gaggcgcatc
    18061 aggcattgat gctcgactgt cggatgcggc gtaaacgcct tatccgactt acagaattcg
    18121 gagcgcatca ggtaccggca aggttacctg atgcgacgag ggcatttacc cgagggtttt
    18181 gaacgcttta atgcgctgca aatgcgggga gatattcttg aatttgtgcg tctgctcttc
    18241 gtcccagaca atctcgtaat aatgatgcaa ctcttcagat gtccgctggc tgttaagcgc
    18301 ttcatcatta cgcgacaaaa tcaccaggca acgatcgcga ttcttctcgc ggaagttggt
    18361 cacacactta gtggcaatat cggcatactc ttccgggcga tcaatcttgc cttccatgtt
    18421 ctcataaggg aacaaattag ggttgaagat cacctggcgg atatcgcaaa gaaaaccaat
    18481 ccgttccgcc cagtatccgc ccagaccaac gccgcaaatc agcggacgct cgtcgacgtt
    18541 cagttgcaac attttgtcca cttctttaag cagatgctgc atatcatgtt tcggatgccg
    18601 cgtactgtag cttatcaagc gtacatccgg gtcaataaac tgcaattgta agactttctc
    18661 gtggttaccc ggactgttag agtcaaaacc gtgtaaatag ataatcatcg cttcctcaca
    18721 taagccaggg ttagtgacct gctttctctt cctgccagcg ttcatgtaac tgattcagac
    18781 gggtgctgct cgccttccag cgagccgagt ccatcagttc ctgtcgcgaa aatgaacctt
    18841 tatgatacaa acgtgtaaca cgttctgcct tgatcggtga cagattatct aacacgctga
    18901 cggccccttt acgattattg cagaccagga tcatatcgca acctgcgtcc agtgatgcct
    18961 gcccgcgttc ggcataactg cccataatcg cggcaccttc catcgataaa tcgtcagaga
    19021 aaattacacc gtcaaaacac agttcctgac gcaaaacggt tttcagccag taagaagaac
    19081 cgctcgccgg acgcggatca acatcactgt agatcacatg cgcaggcata atggcgtcga
    19141 gtttattttc gcggattaac gtgctgaaaa ccgacatatc tttggcacga atttccgctt
    19201 gcgggcgtgg gtcgcacggc gtctctttgt gtgaatctgc agttactgca ccgtgtcctg
    19261 ggaagtgttt cccggtcgtt ttcattccgg cttcatgcat cccatcaata aaccgactag
    19321 cgattgccag ggctttttct gggtcggcat gataagaacg ctcgccaatc gccgcgctga
    19381 tatgtcctac atccagcact ggcgcaaagc tgatatcaat atccatagcg atcatttcgc
    19441 tggccatcag ccaacccgcc tcttgcgcca gtttgccgcc ctcttccatt cccaacagcg
    19501 cagcaaagga ttgtgctgcc ggtaagcggg taaaaccttc gcgaaaacgc tgcacgcgtc
    19561 caccttcctg atctaccgcc accaccagat gattgcgcga tgctgcgcgg atctggcgca
    19621 ccagttcacg taactgggca ggatcatgat agttacgcgt aaagagaatc agccctccca
    19681 ccagcggatg cgccagtatt tcacgctctt ccgcgtccag ttcataacct tcgacatcca
    19741 acattactgg acccacactg ctctccttat tgttttatta atagctgccg ccaggtgtca
    19801 tcggccagcc tgataaattg ttgatcgccg gtttgtcgcc agcggtactc aaaccaccct
    19861 gctttgagca tcagcagcca gggaaaccat cgcctgacct gacgccataa ttgcgccgga
    19921 taaatcttcg cgcgagtggc atagtcattg accaattgcc ggtgctgttc agtattttcc
    19981 acccacaccg ccgccagttc cagcgcggta tcaccatctc cggcatactc ccagtcgatg
    20041 agttttaacc ctgatgcgct atgcactaaa tttccggcgt ggacatccat atgcaatgga
    20101 cttaagcgta aaggtcgtgg ttcccgcgct ttgcgcagac gttttaacat tcgcagccaa
    20161 cccacagtcc gccgcgccgg atcgctttgc tgccagtaca gttccagtaa cggcaacagc
    20221 gttattcgcc agccaaaacg tggttgttga tgtagataat acagcaagcc tgccagttcg
    20281 ttggtatccg gcaaatacgt ttttaccgcg ccgggcagat agtcgactac catccagtca
    20341 cggagatata aatgcggctt cggtgcaatg cttgcgggta gttgtgataa agcccgatac
    20401 tggcgcaaga acgcggactg cggcgcatca ggatcgtgcg gctgacgcac aacaaaacgc
    20461 tggccctgat gttcaatgag aaaactaccg ccactaagcc cactattaaa cgtcgtgacg
    20521 ggatgaaact gcgggaaaaa gcgcgacagc aattcgtcgc gcgtgatggg attattactg
    20581 cgaaacggca cctttacctg accagataat ttcgcccgtc tgcaccagca tcagctgcat
    20641 ttgtagggtc ggagcgttaa cgttgccaga ggcgctggag tacagcacgt aatgagcgcc
    20701 gacattgcgg gcaatgccta tggctttact acgggtgcct aaactgtcct gcggcgacaa
    20761 acctaactgt tgcttagcca tcgacagttg ctgggcggaa accagggtaa atttcccgtt
    20821 attagccagc gcatttcgca gcgtttcggt cgcttctgcg gcattcagcg aaccgttagt
    20881 acggttgtta acgctatcaa ccagcaggac gctacccgca gtcaccccgt cagccccaag
    20941 catcttactg actatcggct gcattgcgcc attccagtca taatggcgaa tatgcggcgc
    21001 aggcggtgcc gttcgatctt cgtgctcaat tgggcctggc tgctgcggga tcgtcggcac
    21061 cgagggcact gtggggacag gctgttgtgg ctcggctggt tgttccggcg ctggtttcac
    21121 ttcttctacc ggtgcaggtt cacgttgccc cacacacccg gcgagaaaca tcgccagcgc
    21181 ggtaatcaag gcgtagcgac tcatttttgt catcaagatt caccccttac aaatatagat
    21241 aaagtctgac tttgtgcgcc cccagaaaat tggcgctgcc gtacagcgtt accgccgaat
    21301 gtgcgggaat ggtaacgctg cgtggccttt ccagaggatg catctccagc cctctggcgt
    21361 cataccagta aaaacgataa tgaacggtaa cgggtttttg cctttcgtta taaagcgttg
    21421 aggatgctga aggttgaata tcagacgtcg aaaggacggg cttttctgca ctgatgcccg
    21481 cagccaataa agatgactcc atcaccagcg attgctcatc attcaccgga atttccggat
    21541 gtgaacgaca gcccaccagc agtaacaaca ccagagacac cagcccaaag catccttttc
    21601 tcatcgttac agacctttat gcgccagcat tggtcccagc ggacggccac ccaacaagtg
    21661 catatggatg tggtaaacct cttgtccgcc atggcggttg gtattcatga tcagacgata
    21721 gccatcttcg gcaatacctt cttgctcagc aatttttgcc actacggtga tcatgcgtcc
    21781 cagcgcctgc tcatgctcag ctgagacgtc gttcacagtc ggaatgagga tattcggaat
    21841 gatcagaata tgcgttggcg cttgcggcga aatatcgcga aacgccgtta ccagatcatc
    21901 ctggtagacg atatcggagg ggatctcacg acgaataatt ttgctgaata tagtttcttc
    21961 tgccacgaca ttttcctttt tcaaatagcc atgcgttgcg ccatgctacg ccgcgccaca
    22021 ctgcgagtat agagtatggt cgagttaaac ctgctctttc aaccttaact cacgatttct
    22081 taagcaaaaa atcgttttgc tgccgtatat atcgccatta ttcccatttc tgcctgcgaa
    22141 tgcgctgaaa agacattctc tgtttggttt acacgacaaa tatgaatgcg tatatttctc
    22201 atttgcattt acaaacaaaa ttattcgcac actaaatata atcgctcatc accctcctcc
    22261 ggcatgagcc tgacgacaac ataaaccatg agatttcaaa tgctttcaac acaatttaac
    22321 agggataatc aatatcaagc catcaccaaa ccgtcactac ttgccggttg catagcactg
    22381 gcactattac cttctgccgc ttttgctgca ccagccactg aagaaacggt gattgttgag
    22441 ggttcagcca cagctccaga tgatgg
//
LOCUS       DAJVSY010000061        22359 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.061, whole genome shotgun sequence.
ACCESSION   DAJVSY010000061 DAJVSY010000000
VERSION     DAJVSY010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22359
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.061"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..1298
                     /locus_tag="OQQ19_002049"
     CDS             <1..1298
                     /locus_tag="OQQ19_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YjjI family glycine radical enzyme"
                     /protein_id="HCS1803683.1"
                     /translation="WLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPY
                     VRILTQDEIDVRIKRFWRYLDGTLPDAFMHANIGPSDSPITRAILRADAELKQVSPNL
                     TFIYDPEIPPDDLLLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSLPLAGG
                     GSTLVRLNLKAIAERSESLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLV
                     KEGLINPERFVPMFGMYGLAEAVNLLCEKEGIAARYGKEAAANEVGYRISAQLAEFVA
                     NTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPYGDEPDPIIHLQTVAPHHAYYYSGI
                     SDILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYR
                     AEGSRTNTTWLGEEATRNTRILERQPRVISHEQQMRFSQ"
     gene            1270..2133
                     /locus_tag="OQQ19_002050"
     CDS             1270..2133
                     /locus_tag="OQQ19_002050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjW family glycine radical enzyme activase"
                     /protein_id="HCS1803684.1"
                     /translation="MNSRCALVSKIIPFSCVDGPGSRLALFLQGCNLRCKNCHNPWTM
                     GRCNDCGECVPQCPHQALQIVDGKVLWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEV
                     LSHVRKAVLFIEGITVSGGEATTQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETG
                     WEKLLPVCDGAMLDLKAWGSECHQHLTGRDNQQIKRSICLLAERGKLAELRLLVIPDQ
                     VDYLHHIDELATFIKRLGDVPVRLNAFHAHGVYGEAQSWASATPEDVEPLADALKVRG
                     VSRLIFPALYL"
     gene            complement(2347..3129)
                     /locus_tag="OQQ19_002051"
     CDS             complement(2347..3129)
                     /locus_tag="OQQ19_002051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313363.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS1803685.1"
                     /translation="MICRFIDTHCHFDFLPFSGDEEASLQRAAQAGVGKIIVPATEAE
                     NFARVQALAEKYQPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEVGLDL
                     FGDDPQLERQQWLLDEQLKLAKRYDLPLILHSRRTHDKLAMHLKRHDLSRTGVVHGFS
                     GSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQG
                     QPNRPEQAVRVFDVLCELRPEPEDEIAEVLLNNTYALFSVSG"
     gene            complement(3126..4199)
                     /locus_tag="OQQ19_002052"
     CDS             complement(3126..4199)
                     /locus_tag="OQQ19_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin family protein"
                     /protein_id="HCS1803686.1"
                     /translation="MGQRIPVTLGNIAPLSLRPFQPGRIALVCEGGGQRGIFTAGVLD
                     EFMRAQFNPFDLYLGTSAGAQNLSAFICNQPGYARKVIMRYTTKREFFDPLRFVRGGN
                     LIDLDWLVEATASQMPLQMDTAARLFDSGKSFYMCACRQDDYAPNYFLPTKQNWLDVI
                     RASSAIPGFYRSGVSLEGINYLDGGISDAIPVKEAARQGAKTLVVIRTVPSQMYYTPQ
                     WFKRMERWLGDSSLQPLVNLVQHHETSYRDIQQFIEKPPGKLRIFEIYPPKPLHSIAL
                     GSRIPALREDYKLGRLCGCYFLATVGKLLTEKAPLTRHLVPVVTPESIVIPPAPVAND
                     TLVAEVIDAPQANDPTFNNEDLA"
     gene            complement(4321..4482)
                     /locus_tag="OQQ19_002053"
     CDS             complement(4321..4482)
                     /locus_tag="OQQ19_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HCS1803687.1"
                     /translation="MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLV
                     SLFMGRKRP"
     gene            complement(4609..5214)
                     /gene="osmY"
                     /locus_tag="OQQ19_002054"
                     /pseudo
     CDS             complement(4609..5214)
                     /gene="osmY"
                     /locus_tag="OQQ19_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418793.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone OsmY"
     gene            complement(5607..7196)
                     /gene="prfC"
                     /locus_tag="OQQ19_002055"
     CDS             complement(5607..7196)
                     /gene="prfC"
                     /locus_tag="OQQ19_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HCS1803688.1"
                     /translation="MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAG
                     TVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRT
                     LTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVEN
                     ELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAA
                     VGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWA
                     PAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQV
                     RTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPN
                     FAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVV
                     SRLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSM
                     VNLRLAQERYPDVQFHQTREH"
     gene            complement(7287..7964)
                     /gene="yjjG"
                     /locus_tag="OQQ19_002056"
     CDS             complement(7287..7964)
                     /gene="yjjG"
                     /locus_tag="OQQ19_002056"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HCS1803689.1"
                     /translation="MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQA
                     VNKPLWVDYQNGAITSLQLQHGRFESWAERLKVEAGLLNDAFINAMAEICTPLPGAVS
                     LLNAIRGNAKIGIITNGFSALQQVRLERTGLRDYFDLLVISEEVGIAKPNKKIFDYAL
                     ELAGNPDRSRVLMVGDTAESDILGGINAGLATCWLNAHHLEQPEGIAPTWTVSSLHEL
                     EQLLCKH"
     gene            complement(7979..8425)
                     /gene="rimI"
                     /locus_tag="OQQ19_002057"
     CDS             complement(7979..8425)
                     /gene="rimI"
                     /locus_tag="OQQ19_002057"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HCS1803690.1"
                     /translation="MNTISSLETTDLPAAYHIEQRAHAFPWSEKNFASNQGERYLNFQ
                     LTQNGKMAAFAITQVVLDEATLFNIVVDPDYQRQGLGRVLLKHLIDELEKRGVATLWL
                     EVRASNAAAIALYESLGFNEATIRRNYYPTTDGREDAIIMALPISM"
     gene            complement(8394..8807)
                     /gene="holD"
                     /locus_tag="OQQ19_002058"
     CDS             complement(8394..8807)
                     /gene="holD"
                     /locus_tag="OQQ19_002058"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit psi"
                     /protein_id="HCS1803691.1"
                     /translation="MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVAN
                     DLPALTDPLVSDVLRALTVSPDQVLQLTPEKIAMLPQGSRCNSWRLGTDEPLSLEGAQ
                     VASPALTELRANPTARAALWQQICTYEHDFFPRND"
     gene            8910..9941
                     /gene="rsmC"
                     /locus_tag="OQQ19_002059"
     CDS             8910..9941
                     /gene="rsmC"
                     /locus_tag="OQQ19_002059"
                     /EC_number="2.1.1.172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1207)-N(2))-methyltransferase
                     RsmC"
                     /protein_id="HCS1803692.1"
                     /translation="MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARLDTAASRA
                     HTQQFHHWQVLSRQMGDNARFSLVATVDDVADCDTLIYYWPKNKPEAQFQLMNLLSLL
                     PVGTDIFVVGENRSGVRSAEQMLADYAPLNKVDSARRCGLYFGRLEKQPVFDADKFWG
                     EYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS
                     PKIRLTLCDVSAPAVEASRATLAANCVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQ
                     TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRA
                     IMTRQAKKG"
     gene            10209..10295
                     /locus_tag="OQQ19_002060"
     tRNA            10209..10295
                     /locus_tag="OQQ19_002060"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10243..10245,aa:Leu,seq:cag)
     gene            10324..10410
                     /locus_tag="OQQ19_002061"
     tRNA            10324..10410
                     /locus_tag="OQQ19_002061"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10358..10360,aa:Leu,seq:cag)
     gene            10446..10532
                     /locus_tag="OQQ19_002062"
     tRNA            10446..10532
                     /locus_tag="OQQ19_002062"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10480..10482,aa:Leu,seq:cag)
     gene            complement(10571..10807)
                     /locus_tag="OQQ19_002063"
     CDS             complement(10571..10807)
                     /locus_tag="OQQ19_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313355.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1435 domain-containing protein"
                     /protein_id="HCS1803693.1"
                     /translation="MLQRTLGSGWGVLLPGLLIAGLMYADLSPDQWRIVILMGLVLTP
                     VMLYHKQLRHYVLLPSCLALIAAIMLMIMNLNQG"
     gene            10948..11736
                     /gene="fhuF"
                     /locus_tag="OQQ19_002064"
     CDS             10948..11736
                     /gene="fhuF"
                     /locus_tag="OQQ19_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore-iron reductase FhuF"
                     /protein_id="HCS1803694.1"
                     /translation="MAYRSAPLYEDIIWRTHLQPQDAGLAQAVRATIAKHREHLLEFI
                     RLDEPAPLNAMTLAQWSSPNALSSLLAVYSDHIYRNQPTMIRENKPLISLWAQWYIGL
                     MVPPLMLALLTQEKALDVSPEHFHAEFHETGRVACFWVDVCEDKNATPHSPQQRMETL
                     ISQALVPVVQALEATGEINGKLIWSNTGYLINWYLTEMKQLLGEATVESLRHALFFEK
                     TLTNGEDNPLWRTVVLRDGLLVRRTCCQRYRLPDVQQCGDCTLK"
     gene            complement(11774..12450)
                     /gene="bglJ"
                     /locus_tag="OQQ19_002065"
                     /pseudo
     CDS             complement(11774..12450)
                     /gene="bglJ"
                     /locus_tag="OQQ19_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418786.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator BglJ"
     gene            complement(12408..13133)
                     /locus_tag="OQQ19_002066"
     CDS             complement(12408..13133)
                     /locus_tag="OQQ19_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HCS1803695.1"
                     /translation="MLPGCCKNGIVISKIPVMQAGLKEVMRTHFPEYEIISSASAEDF
                     TLLQLRRSGLVIADLAGESEDPRSVCEHYYSLISQYREIHWVFMVSRSWYSQAVELLM
                     CPTATLLSDVEPIENLVKTVRSGNTHAERISAMLTSPAMNETHDFSYRSVILTLSERK
                     VLRLLGKGWGINQIVSLLKKSNKTISAQKNSAMRRLAIHSNAEMYAWINSAQGARELN
                     LPSVYGDAAEWNTAELRREMSHS"
     gene            13752..14522
                     /locus_tag="OQQ19_002067"
     CDS             13752..14522
                     /locus_tag="OQQ19_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HCS1803696.1"
                     /translation="MQTEQQRAVTRLCIQCGLFLLQHGAESALVDELSSRLGRALGMD
                     SVESSISSNAIVLTTIKDGQCLTSTRKNHDRGINMHVVTEVQHIVILAEHHLLDYKGV
                     EKRFSQIQPLRYPRWLVALMVGLSCACFCKLNKGGWDGAIITFFASTAAMYIRQLLAQ
                     RHLHPQINFCLTAFAATTISGLLLQLPTFSNTPTIAMAASVLLLVPGFPLINAVADMF
                     KGHINTGLARWAIASLLTLATCVGVVMALTIWGLRGWV"
     gene            14513..14986
                     /locus_tag="OQQ19_002068"
     CDS             14513..14986
                     /locus_tag="OQQ19_002068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418783.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter"
                     /protein_id="HCS1803697.1"
                     /translation="MGVIEFLFALTQDMILAAIPAVGFAMVFNVPVRALRWCALLGAI
                     GHGSRMILMTRGLNIEWSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMFPGISA
                     YTAMISAVKISQLGYSEPLMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV"
     gene            15094..15633
                     /gene="dnaT"
                     /locus_tag="OQQ19_002069"
     CDS             15094..15633
                     /gene="dnaT"
                     /locus_tag="OQQ19_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein DnaT"
                     /protein_id="HCS1803698.1"
                     /translation="MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYA
                     VTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFI
                     RLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPK
                     RDVNTVSEPDSQIPPGFRG"
     gene            15636..16373
                     /gene="dnaC"
                     /locus_tag="OQQ19_002070"
     CDS             15636..16373
                     /gene="dnaC"
                     /locus_tag="OQQ19_002070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication protein DnaC"
                     /protein_id="HCS1803699.1"
                     /translation="MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAAL
                     ERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASF
                     IFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDL
                     SNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVM
                     DRMRLGNSLWVIFNWDSYRSRVTGKEY"
     gene            16422..16916
                     /locus_tag="OQQ19_002071"
     CDS             16422..16916
                     /locus_tag="OQQ19_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418780.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2501 domain-containing protein"
                     /protein_id="HCS1803700.1"
                     /translation="MMETVKHLLCCAIAASALISTGVHAASWKDALSSAASELGNQNS
                     TTQEGGWSLASLTNLLNSGNQALSADNMNNAAGILQYCAKQKLASVTDAENIKNQVLE
                     KLGLNSEEQKEDTNYLDGIQGLLKTKDGQQLNLDNIGTTPLAEKVKTKACDLVLKQGL
                     NFIS"
     gene            17170..19461
                     /gene="opgB"
                     /locus_tag="OQQ19_002072"
     CDS             17170..19461
                     /gene="opgB"
                     /locus_tag="OQQ19_002072"
                     /EC_number="2.7.8.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418779.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerol--membrane-oligosaccharide
                     glycerophosphotransferase"
                     /protein_id="HCS1803701.1"
                     /translation="MSELLSFALFLASVLIYAWKAGRNTWWFAATLTVLGLFVVLNIT
                     LFASDYFTGDGINDAVLYTLTNSLTGAGVSKYILPGIGIVLGLTAVFGALGWILRHRR
                     HHPHHFGYSLLALLLALGSVDASPAFRQITELVKSQSRDGDPDFAAYYKEPSKTIPDP
                     KLNLVYIYGESLERTYFDNEAFPDLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVAS
                     QCGIPLFAPFEGNASASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKS
                     HGFDHLYGSEELKSVVADPHYRNDWGFYDDTVLDEAWKKFEELSRSGQRFSLFTLTVD
                     THHPDGFISRTCNRKKYDFDGKPNQSFSAVSCSQENIAAFINKIKASPWFKDTVIVVS
                     SDHLAMNNTAWKYLNKQDRNNLFFVIRGDKPQQETLAVKRNTMDNGATVLDILGGDNY
                     LGLGRSSLSGQSMSEIFLNIKEKTLAWKPDIIRLWKFPKEMKEFTIDQQKNMIAFSGS
                     HFRLPLLLRVSDKRVEPLPESEYSAPLRFQLADFAPRDNFVWVDRCYKMAQLWAPELA
                     LSTDWCVSQGQLGGQQIVQHVDKTTWQGKTAFKDTVIDMARYKGNVDTLKIVDNDIRY
                     KADSFIFNVAGAPEEVKQFSGISRPESWGRWSNAQLGDEVKIEYKHPLPKKFDLVITA
                     KAYGNNASRPIPVRVGNEEQTLVLGNEVTTTTLHFDNPTDADTLVIVPPEPVSTNEGN
                     ILGHSPRKLGIGMVEIKVVEREG"
     gene            complement(19600..20622)
                     /gene="lgoD"
                     /locus_tag="OQQ19_002073"
     CDS             complement(19600..20622)
                     /gene="lgoD"
                     /locus_tag="OQQ19_002073"
                     /EC_number="1.1.1.414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-galactonate oxidoreductase"
                     /protein_id="HCS1803702.1"
                     /translation="MSTMNVLICQQPKELVWKQREIPIPGDNEALIKIKSVGICGTDI
                     HAWGGNQPFFSYPRVLGHEICGEIVRLGKNIADLKNGLQVAVIPYVACQQCPACKSGR
                     TNCCEKISVIGVHQDGGFSEYLSVPVANILPADGIDPQAAALIEPFAISAHAVRRAAI
                     APGEQVLVVGAGPIGLGAAAIAKADGAQVVVADTSPARREHVATRLELPLLDPSAEDF
                     DAQLRAQFGGSLAQKVIDATGNQHAMNNTVNLIRHGGTVVFVGLFKGELQFSDPEFHK
                     KETTMMGSRNATPEDFAKVGRLMAEGKITADMMLTHRYPFATLAETYERDVINNRELI
                     KGVITF"
     gene            20761..21675
                     /locus_tag="OQQ19_002074"
     CDS             20761..21675
                     /locus_tag="OQQ19_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313344.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1803703.1"
                     /translation="MSRSQNLRHNVINQVIDDMARGHIPSPLPSQSALAEMYNISRTT
                     VRHILSHLRECGVLTQVGNDYVIARKPDHDDGFACTTASMSEQNKVFEQAFFTLINQR
                     QLRPGETFSELQLARAAGVSPVVVREYLLKFGRYNLIQSEKRGQWSMKQFDQSYAEQL
                     FELREMLETHSLQHFLNLPDHDPRWLQAKTMLERHRLLRDNIGNSFRMFSQLDRDFHS
                     LLLSAADNIFFDQSLEIISVIFHFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLD
                     ATLALRNHLNSAKQSMIRSINENTRYAH"
     gene            21890..>22359
                     /locus_tag="OQQ19_002075"
     CDS             21890..>22359
                     /locus_tag="OQQ19_002075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1803704.1"
                     /translation="MEKENITIDPRSSFTPSSSADIPVPPDGLVQRSTRIKRIQTTAM
                     LLLFFAAVINYLDRSSLSVANLTIREELGLSATEIGALLSVFSLAYGIAQLPCGPLLD
                     RKGPRLMLGLGMFFWSLFQAMSGMVHNFTQFVLVRIGMGIGEAPMNPCGVKVIN"
BASE COUNT         5528 a         5844 c         5531 g         5456 t
ORIGIN      
        1 aatggctgga gctggaaggc gcgaaagatc ttgatgacgc actctctctg ctgaccattc
       61 tttaccacca cgtaccgtcg gtcacatcga tgccggtcta cctagggcaa ctggatgcgt
      121 tgttgcaacc gtatgttaga attctaacac aagacgagat cgatgttcga ataaaacgtt
      181 tctggcgtta cctcgacgga accctgccag acgcctttat gcacgccaat atcggcccgt
      241 ctgattcgcc cattacccgc gcgatcttac gtgcagacgc agagttgaag caggtttcac
      301 cgaacctgac ctttatctac gatcctgaaa tcccccctga tgacctgctg ctggaagtgg
      361 cgaagaacat ctgtgaatgt agcaaaccgc acatcgccaa cggtccggtg catgataaaa
      421 ttttcacaaa agggggctac gggattgtga gctgttacaa ctcactgccg ctggcgggtg
      481 gtggcagcac gctggtacgc cttaacctga aagccattgc cgagcgcagc gaatcgctgg
      541 atgacttctt tacgcgcact ctaccgcact actgccagca gcagatcgcc atcatcgatg
      601 cgcggtgtga attcctctat caacaatcac acttctttga gaatagcttc ctggtgaaag
      661 aagggctgat taaccctgaa cgttttgtgc caatgtttgg catgtatggg ctggcggaag
      721 cggttaactt gctgtgtgag aaagaaggga ttgccgcgcg ctacggtaaa gaagccgccg
      781 caaatgaagt gggttatcgc atcagcgcgc aactggcgga gtttgtcgcc aatacccccg
      841 tgaaatatgg ctggcaaaaa cgcgccatgt tacacgcaca gtcggggatc agttccgata
      901 tcggcaccac gccgggcgcg cgtttgccgt atggcgatga gccagatccg atcatccatc
      961 tgcaaactgt cgccccgcat catgcttatt attattccgg catcagcgac attctgacgc
     1021 tcgacgaaac catcaaacgt aatccgcagg cgctggtaca gctttgcctc ggtgccttta
     1081 aagccggaat gcgtgaattt accgccaatg tcagcggtaa cgatctggtt cgcgttaccg
     1141 gttatatggt gcgtttgtcg gatttagaaa aatatcgcgc cgaaggttca cgcaccaaca
     1201 ccacctggct gggcgaagaa gccacacgca acactcgtat tctggaacgc cagccgcgcg
     1261 tgataagcca tgaacagcag atgcgcttta gtcagtaaga ttatcccctt ctcctgcgtt
     1321 gacgggccag gcagtcgtct ggctctgttt ctgcagggct gcaatctgcg ctgcaaaaac
     1381 tgtcacaatc cgtggacgat gggacgctgc aatgattgcg gagagtgcgt gccacagtgt
     1441 ccgcatcagg cgttgcagat tgttgacggc aaagtgctgt ggaacgctgt ggtctgcgag
     1501 cagtgtgata cctgcctgaa gatgtgtccg caacatgcca cgccaatggc gcaatccatg
     1561 agcgtggacg aagtgcttag ccatgtccgc aaagcggtgc tgtttattga agggataacg
     1621 gtaagcggcg gcgaagccac gacccaactg ccgtttgtag tggcgctgtt tactgctatc
     1681 aaaaacgatc cgcaactgcg ccacctcacc tgcctggtgg acagtaacgg catgttgagc
     1741 gaaaccggct gggaaaaatt actcccggtg tgtgacggcg caatgctcga tctcaaagcg
     1801 tgggggagcg aatgtcatca acacttaacc ggacgcgata atcagcagat taagcgcagc
     1861 atctgtttgc ttgcagagcg cggcaagctg gcggaactgc gtttgctggt aattccagac
     1921 caggtggatt atttgcatca catcgatgag ctggcgacgt ttatcaagag acttggcgat
     1981 gttccggttc gcctgaatgc gtttcatgcc cacggcgtgt atggcgaggc gcaaagctgg
     2041 gcgagcgcca cgccggaaga cgttgagccg ttggctgatg cgttaaaggt gcgcggggtg
     2101 agccggttga tatttccggc gctctatttg tgacatgccg gatacggcct acggttcggc
     2161 acagacttgt aggcatgata agacgcgaca agcgtcgcat caggcattgt gcgccaactg
     2221 ccggatgcgg cgtgaacgcc ttatccggcc tacggttcgg cacaaacctg taggcatgat
     2281 aagacgcgac aagcgtcgca tcaggcatta tgcgccgact gccggatact gcctacgaag
     2341 ggtaaactac ccactaacgc taaacaacgc atacgtatta ttaagcaaca cttcggcaat
     2401 ctcatcttct ggttccgggc gcaactcgca aagcacgtca aacacccgca cagcctgttc
     2461 cggtcggtta ggctgcccct gaaagccgtt gagcggcata tccggcgcgt cggtttccag
     2521 caacaacgat gccagcggta attttgcgat gacatcgcgg gttttactgg cgcgtggata
     2581 ggtgatagta ccgcctacgc cgattttgta gcccagctgt acaaaccgct cggcctgttg
     2641 caggctgccg gaaaaaccgt gaaccacgcc agtgcgcgat aaatcgtggc gtttaagatg
     2701 catcgccagt ttgtcgtgtg tgcgccgtga atgcaggatc agcggcagat cgtagcgttt
     2761 cgccagtttc agctgttcgt cgagtaacca ctgctgcctc tcaagttgcg gatcgtcgcc
     2821 gaagagatcc agaccgacct cccccactgc caccaccttc gccggacgcc tttccagcgc
     2881 ctgctgtagc tgctcaagag acacatcgct atgtttttcc aacatacctg gatgcaagcc
     2941 caatgcggca tacagcggtt gatatttttc cgctaacgcc tgcacacggg caaaattttc
     3001 cgcctctgtc gccggaacaa tgatcttgcc tacgcccgct tgtgccgcgc gttgcaggct
     3061 ggcctcttca tcgccactaa acggcaggaa atcaaaatgg cagtgggtgt cgataaaacg
     3121 gcaaatcaag ccagatcctc attgttaaat gtcgggtcgt tcgcctgcgg agcgtcaatc
     3181 acttcggcaa ccagcgtatc gttggcgact ggcgcaggcg gaataacgat cgattccggc
     3241 gtcaccactg gcaccagatg gcgggtaagc ggcgcttttt cagttaatag cttgccaacc
     3301 gtggcgagga aataacaacc gcataaacgc ccaagtttat agtcttcacg cagcgccgga
     3361 atccgactgc caagcgcgat actatgtaat ggcttcggcg gataaatttc gaatatccgc
     3421 agcttgcccg gtggtttctc aataaattgc tgaatgtcac gatagctggt ttcatgatgc
     3481 tgcaccagat tgaccagcgg ctgcaggcta ctgtcaccca gccagcgttc catgcgtttg
     3541 aaccactgcg gcgtgtagta catttgtgac ggcacagtgc gaatgacgac caacgtttta
     3601 gcgccctgcc ttgccgcctc tttaaccgga atcgcatcac tgatcccgcc atccaggtag
     3661 ttaatgcctt ccagcgacac tccgctacga taaaagccag gtatcgcact ggaggcgcga
     3721 atcacatcca gccagttttg tttggttggt aaaaagtaat taggcgcgta gtcatcctga
     3781 cgacaggcgc acatataaaa cgatttgccg ctgtcaaaca accgcgcggc ggtatccatt
     3841 tgcaacggca tctggcttgc ggtggcctcc accagccagt cgagatcgat aagatttcct
     3901 ccacggacaa agcgcaatgg atcgaaaaat tcgcgttttg tggtatagcg catgatgact
     3961 ttacgcgcgt aaccgggctg attgcagata aacgccgaga ggttctgcgc cccggcagat
     4021 gtgccgagat aaagatcgaa aggattaaac tgcgcgcgca taaactcatc cagcacgcca
     4081 gccgtgaaaa ttccacgctg tccgccgcct tcgcacacca gagctattcg tccaggctgg
     4141 aacggcctta gcgacaacgg cgcaatatta ccaagcgtta caggtattcg ctgccccacc
     4201 tctgccttcc tgtttttgtt gtgaaagaat gacaaagtaa cgcaatttat tattcgctaa
     4261 aaccgcaaaa gccagtccgc tggactggct ttggataaaa ttttcttaat ggtctgaaat
     4321 ctagggtcgt tttcggccca tgaacaaact caccaggaac agaataatcc cgacgacaaa
     4381 gacaatttta gctgcgcctg cagcggtacc ggccaaacca ccaaacccaa gtgcggcggc
     4441 gattaacgcg ataaccagaa atatgatgcc ccaacgaaac ataagcgtct cctttaccat
     4501 agttaatgtc accgcttgat atgagcgtga aaatcactca atgcgatatt tttagtgtgg
     4561 tgcacatcgc gcctcccgac aaagttcggg aggacgaatt acgacgaatt acttagtttt
     4621 cagatcattt ttaacgcttt tcacaccatc taccgctttg gcgatacttt cagcacggtc
     4681 actttgtgcc tgagaatcta cggtaccgga gagctgaacc acgccgtcgg tggtttcaac
     4741 tttcacatga cgggaaggga cgatatcgtc cgccagcagt ttggctttga tttcactggt
     4801 ggtggcggtg tcacccgcgt agcccttcac cgagccttct ttagcgtcgc gaacgtgcag
     4861 tttgtcgctg acagaggtca ccccttcaac gcctttcgcc actttcactg cctcttcggc
     4921 ctgagcctag ctttcaacga aaccgctcag ggtcacgact ttttgctcgg ttttgacaga
     4981 gatatcggtg ctcttgatgt tgtcatgatc caccagcgcc gccttcactt tcgcggtgat
     5041 ggcgctgtca tccatgaaat taccgacttt attcatagag ctatcgactt tttgccctgc
     5101 gctttcattg gtagtctgtg cgttgttttc cgcgtaggca gagccggtcg cgacggcaga
     5161 ggtcaacatt acagccagca gagttttcga aatcttcagt cttgtcatag tcatcgattt
     5221 attcctgtat gtttgctcgt aatttgagcc tggcaacacg aggttgcatt gctgaatagg
     5281 gagagacttc accctctaca gaagtcaatg gccgccatca caaaagcgat gggtgatgaa
     5341 taacgaccat tacagcctct gaatcagtta ttaatatcgg tagaatgaca atcgacggct
     5401 ttagatactg atatctacgc attgaacggt atttaacgcc gtcagaaatg tcattacttt
     5461 gttaaatata gatcacaatt ttgaaaccgc tcgtgatatc agcgaaaaca taagcaaaag
     5521 tgaatgtttt aagaacattc cgtaagcggc taataaggaa gggaaattga cagggcgcag
     5581 cggctaccgc gccctggagg caagaattaa tgctcgcggg tctggtggaa ctgaacgtcg
     5641 ggataacgtt cctgcgccag gcgcaggttg accatgctgg tagcgatgta agcgaggtta
     5701 tcgccgccat caagcgccag ttggctttcg ttcttacgct tgaactcttc gaatttcttc
     5761 gcgtccgcac attctaccca gcgggcagtg gcaacgttga ctgattcata tactgcttca
     5821 acgttgtatt cgctcttcag gcgcgatacc accacatcaa actgcagcac accaacagca
     5881 ccaacgatca aatcgttgtt ggagatcgga cggaacacct gcaccgcgcc ctcttcggaa
     5941 agctgtacca gccctttgag cagctgtttt tgcttcagcg gatctttcag gcggatacga
     6001 cggaacagtt ctggtgcgaa gttcggaata ccggtgaact tcatcatctc accctgggta
     6061 aaggtgtcgc cgatctgaat agtgccgtgg ttgtgcaggc cgaggatatc gcccggatac
     6121 gcttcttcaa cgtgcgaacg gtcgcccgcc ataaaggtca gcgcgtcgga gataaccaca
     6181 tctttcgcag tacgcacctg gcgcagcttc atgccttttt catatttacc ggatactacg
     6241 cgcataaacg ccacgcggtc gcgatgtttc gggtccatat tggcctgaat tttaaatacg
     6301 aagccggtaa atttgtcttc gctcgcctct acggtacggg tatcagtctg acgcggcatc
     6361 ggcgcagggg cccactccac caggccatcc agcatatgat caacgccgaa gttacccagc
     6421 gcagtaccga agaataccgg agtgatttcg cccgcaagga acagttcttt gtcgaactcg
     6481 ttagacgcgc ctttcaccag ttccagttcg tcacgtagct gctgtgccag atcttcacca
     6541 accgcagcgt cgagatccgg gttattcagc cctttaacaa tacggacttc ctgaatcgtg
     6601 tggcctttac cgctctgata aagataggtt tcgtctttat aaaggtggta aacgccttta
     6661 aacagcttgc cgcagccaat cggccaggtg atcggtgcgc agccaatttt cagctcgttc
     6721 tcaacttcat cgagcagttc catcgggtcg cggatatcac ggtcaagttt gttcataaag
     6781 gtgaggatcg gcgtgtcgcg cagacgggta acttccatca gcttacgggt acgatcttca
     6841 acaccttttg cagcgtcgat aaccatcagg cagcagtcca ccgctgtcag ggtacgatag
     6901 gtatcttccg agaagtcttc gtgccccggg gtgtctagca ggttaaccag gcaatcgtga
     6961 tacggaaact gcatcacaga cgtagtaatg gagatcccac gctgcttttc catctccatc
     7021 cagtccgact tagcgtgctg gttggaacca cggcctttta ctgtaccagc ggtctgaatg
     7081 gcctgtccga acagcagcac cttctcggtg atggtagttt taccggcgtc cgggtgagaa
     7141 ataatggcaa aagtgcggcg cttcgccacc tcttgcaaat aaggagacaa cgtcataatt
     7201 ctttcttctt gagtaagcgg catcgcgccg cgcttgttga aaacgaaaaa ttgcggctat
     7261 tttacccatc aacggggggg aggcaatcag tgtttacaca ggagctgctc cagttcgtgc
     7321 aacgatgaaa cggtccaggt gggcgcgatg ccttctggtt gctcgagatg gtgcgcattc
     7381 agccagcaag tcgcaagccc ggcgttgatg ccaccgagaa tatcggactc ggcagtgtcg
     7441 ccaaccatca gcacgcgtga acggtcagga ttgcccgcca gttccagcgc ataatcgaaa
     7501 attttcttat tcggtttggc aatgccaact tcttcggaaa tcaccagcaa atcaaagtaa
     7561 tcacgcaggc ccgtccgttc cagacgcact tgctgcaagg cgctaaaacc gttggtgatg
     7621 atgccgattt tagcgttgcc acgaatggcg ttaagcagag aaaccgcgcc cggcagcggc
     7681 gtgcagattt ccgccatcgc attaataaag gcatcgttaa gcaagcctgc ttcaactttc
     7741 agccgttcgg cccagctctc gaaacgcccg tgctgaagct gtaatgaagt gatcgcgccg
     7801 ttttgataat ccacccacag tggcttgtta acggcctgat agtcctgaaa atcttcagcg
     7861 gtaaaggtga cgctgtaatc aagaaacatc cgctgcaggc cggtgaatga gtcaaaggta
     7921 aacagcgttt catcggcatc aaagaaaatc cagtcccact tcattattcc accttgtctt
     7981 acatactgat tggcaacgcc atgatgatgg cgtcttcgcg accgtccgtg gtggggtagt
     8041 aattgcggcg aatcgtcgcc tcgttaaagc ctaaactttc gtacagggca atggcggcag
     8101 cgtttgaagc acggacttcc agccatagtg tcgccacgcc gcgtttttcc agttcgtcga
     8161 tcagatgttt cagcagcacc cttcccaatc cctgacgctg atagtcagga tcgaccacaa
     8221 tattgaacaa tgtagcttca tccagcacca cttgcgtaat agcaaacgcc gccattttgc
     8281 cgttttgcgt taactgaaag ttgagataac gctcgccctg gttgctggca aagttttttt
     8341 cactccacgg aaaggcgtgg gcgcgttgtt caatgtggta agccgctggt aaatcagtcg
     8401 tttcgaggga agaaatcgtg ttcatatgtg caaatctgtt gccataacgc ggcgcgtgcc
     8461 gttgggtttg cccgtaattc ggtgagcgcc ggtgatgcca cctgagcgcc ttccagtgat
     8521 agcggttcgt cagtacccaa ccgccagctg ttgcagcgac tgccttgcgg cagcatcgcg
     8581 attttttctg gcgtcagttg cagcacttga tcggggctga cggttaatgc gcgcagaaca
     8641 tcgctcacta aaggatcggt cagggcggga agatcgtttg ccaccatcac cagacggacg
     8701 tgtgccggga tcgcaatggc aatctccccc tgcaacgcgc cagggcgacg cagcgaccac
     8761 tgggtaatgc ccagttgctg taactgccag tctcgtcggg atgtcatagc gaatcgctcc
     8821 tgttgtcagg ggcgcaaata tagcaaattc gtcgataccg cgccaacata tggctataat
     8881 cgccgccagt atcaattgag gagcattcca tgtctgcatt taccccggca agtgaagtct
     8941 tgctgcgtca cagtgatgat ttcgaacaaa gccgtattct gtttgccgga gacttacagg
     9001 atgacctgcc cgcgcgttta gataccgcgg ccagccgtgc tcatacccag caattccacc
     9061 actggcaggt attaagccgc cagatggggg ataacgcccg tttcagtctg gtcgccacgg
     9121 tggatgacgt cgcagattgc gatacgctga tttactactg gccgaagaac aaaccggaag
     9181 cccagttcca gttgatgaat ttactttctc tgctgccagt ggggacagat atttttgtcg
     9241 ttggcgagaa ccgcagcggc gtgcgcagcg ccgagcagat gctggcagat tatgcgccgt
     9301 tgaataaagt cgacagcgct cgtcgctgtg gcctctattt tggtcgtctg gaaaaacagc
     9361 cggtatttga tgccgataaa ttctggggcg aatacagcgt cgatggcctg acggtcaaaa
     9421 cgctgcctgg cgtgtttagc cgcgacggtc tggatgtcgg tagccagttg ctgctctcga
     9481 cgttaactcc gcacacgaaa ggtaaagtgc tggatgtcgg ctgtggcgcg ggggtgcttt
     9541 cagttgcctt tgcgcgccat tcgccgaaaa ttcgtctcac cttgtgcgat gtctctgcgc
     9601 cagcggtaga agccagccgc gcaacacttg cggccaactg tgttgaaggt gaagtctttg
     9661 ccagcaacgt cttttccgag gtgaaaggtc gttttgatat gatcatctcc aacccgccgt
     9721 tccacgatgg gatgcaaacc agcctggatg cggcgcaaac gctgattcgc ggcgcggtgc
     9781 gtcatcttaa tagtggcggc gagctgcgaa ttgtagcgaa cgccttcctg ccttatccgg
     9841 acgtgctgga tgaaacattt ggcttccatg aagtgattgc gcaaaccggg cgtttcaagg
     9901 tatatcgcgc cattatgacc cgccaggcga aaaaaggtta agtatcccgc cgcaagcctt
     9961 gccggatgcg gcgtaaacgc cttatccgac ctacaaaacc tgcacgttag cccttcgtag
    10021 gccagataag acgcgccagc gtcgcatctg gcatctgccc ccgcatgcct accaaacctg
    10081 cacgctagtt tcctgatgga catttttcca gcaattacac ctccggcgat aattaactat
    10141 tgacgaaaag ctgaaaacca ctagaatgcg cctccgtggt agcaattctt tttaagaatt
    10201 gatggtatgc gaaggtggcg gaattggtag acgcgctagc ttcaggtgtt agtgtcctta
    10261 cggacgtggg ggttcaagtc ccccccctcg caccaaaaac cacgttgata ttgctcgcac
    10321 tgggcgaagg tggcggaatt ggtagacgcg ctagcttcag gtgttagtgt tcttacggac
    10381 gtgggggttc aagtcccccc cctcgcacca aacgaggcga tatcaaaaaa aagtaagatg
    10441 attgtgcgaa ggtggcggaa ttggtagacg cgctagcttc aggtgttagt gtccttacgg
    10501 acgtgggggt tcaagtcccc cccctcgcac caattatctt tacttccttt cttgtttctt
    10561 ccttgatttt tcatccctga ttcaaattca ttatcatcag catgatggca gcaataagcg
    10621 ccaggcacga tggtagcaaa acgtaatgcc gtaactgttt gtgatacagc atcaccggcg
    10681 tcaatactaa tcccatcaga atgacaatcc gccactgatc cggcgataaa tccgcataca
    10741 tcagccctgc aatcagcaat cccggcagca acactcccca gccactgccc agcgtacgtt
    10801 gcaacatggt ttcatctctt tcattgataa tgataactaa tatcatatga taatttttat
    10861 catttgcaag ccagagaaat cccttgctat cgggtaaacc tatcgctagg attagcaatc
    10921 attatcattt agattactat cccgattatg gcctatcgtt ccgcaccgct ctatgaagat
    10981 atcatctggc gaacgcatct ccagccgcag gatgctgggc ttgcacaagc cgtacgtgcg
    11041 acgatcgcca aacatcgtga acatttgctc gagtttatcc gcctggatga acccgctccg
    11101 cttaacgcca tgacgctggc gcaatggtca tcaccgaatg cgctaagttc tctactcgcg
    11161 gtctattccg atcatatcta tcgcaaccaa ccaacgatga tccgcgagaa caaaccgctg
    11221 atctcactat gggcacaatg gtatatcggc ctgatggtgc caccattaat gctggcgcta
    11281 ctgacgcagg aaaaggcatt agatgtgtcg ccggaacatt tccatgctga gtttcacgaa
    11341 accggacgcg tcgcctgttt ctgggtcgat gtgtgtgaag ataaaaacgc aacaccacat
    11401 tcgccgcagc agcgaatgga aacgttaatc agccaggcgc tggttccggt tgtgcaggca
    11461 ctagaagcga ccggagagat caacggcaaa cttatctgga gtaataccgg ttatttgatc
    11521 aactggtatc tcactgagat gaagcaactg ctcggcgagg cgacggttga atcgctgcgc
    11581 catgccctct tttttgagaa aacgctcacg aacggtgaag ataatccact ctggcgtacc
    11641 gtcgtgctgc gcgatggcct gctggtgcgc cgaacctgct gccagcgtta tcgcttaccg
    11701 gatgtgcagc aatgtggcga ttgtacgctg aaatgaaagc actgccgggg aagtaaaccc
    11761 ggcatcatgc ggattaatag ggatgcaaca cattacttgc ttcgcaatgc cgcatacata
    11821 acagaatatc tgcggcctcc aacacccctg catcagaact gacgcccagt ttcgacatca
    11881 cattaaattt atgtgcacgg atcgttttga tattgcgttt aagctgctcg gcaatttgtg
    11941 tcattgagta gccacgcgac ataaagcgca atatttctct ctccgtcggg cttagcgtcc
    12001 ggctttggtt aatgtaccac tgattgttca gtcggtcggt cgcctgacgt acaccattta
    12061 atgacaaaaa gagttcctga tgaaaaatct ccagcgttga cgctttactt aatacaccgt
    12121 ccagcggtga tggcgacaat gaaccaatca gccgagcttc aatatcatca tccgcaataa
    12181 ctaaacgccg ggtacgcgga aacttaatcg ccagttcagt caggcaagat aatccctctc
    12241 tgcgctcact tctcatggca gaaaaagaaa aatgaccgcc gcaaatgaga tccgcgacat
    12301 ggcatcctga aatgactcct gactggtata ggtatggagc ttataagggt tacccgcaaa
    12361 ctttctgaat aaactctcaa taccgatact gctcatgacg catttttcta tgagtgcgac
    12421 atttctcttc ttaattcggc tgtgttccat tctgcggcat ctccataaac agaaggcaag
    12481 ttaagttctc ttgcaccctg cgcgctattt atccatgcat acatttcagc gttgctgtga
    12541 attgccagtc gacgcatcgc actgtttttt tgggcgctga tagttttatt acttttctta
    12601 agcaacgaaa ctatctggtt gatgccccat cctttaccta atagccgcag taccttgcgc
    12661 tctgaaagag tgagaatgac ggagcgatag ctaaaatcat gagtttcatt cattgccgga
    12721 gaggtcagca tggcgctgat acgctctgcg tgcgtattgc cggaacgtac ggtcttgacc
    12781 agattctcaa tgggttcaac atcagacaat aacgtcgccg tagggcacat gagcaattct
    12841 actgcctggg aataccagga gcgtgacacc atgaaaaccc agtgaatttc ccgatattgt
    12901 gagattaaag aataataatg ttcacaaaca gaacgtggat cttcactttc accggctaaa
    12961 tcagcaatga ctaatccgga acgacgtaat tgtaataagg taaagtcctc cgcagaggcg
    13021 ctggatatta tttcatattc agggaagtga gtcctcatga cctcttttaa ccctgcttgc
    13081 ataacaggta ttttactgat aacaattcca tttttgcagc atcctggcaa catatttcct
    13141 ccacatccac tgtctaaaaa tcatgatggt ttattcagga tattcattcc ttaaatgttt
    13201 ccagcaaatt aatagattaa gcgaataaat tatccttagc attcactttc atatcagcat
    13261 actcctgctg cacaacaact ccactgcatg tgtcagaagg ttagcatcaa atgataacct
    13321 ggtgaaatag cctggagaca tttaaaatat ctacattaag ttgttaggaa tacttaatga
    13381 aaaacagaaa tcacattcat ttaatttata attaaatgat atcccttccc gcagaatgaa
    13441 aagtcacaca accaatattt attcaatgaa atctgatggt tttaacttgt taacattaaa
    13501 aaacgtgccc ggttatctat tatcctgatt cgtaaaggcc aaacaataaa ttcattatag
    13561 tgataatatt catgtgatag tttgtttgcg gcgagagata attcgctttt tatcaccgag
    13621 cttgtcccga taaccaggat taatcagcgc aattttgatc ttaacctacc gcaaaacaac
    13681 cgtgcttcat gatacaaatg gattctcatt atctgaacaa tacgcagcac gtctatgaca
    13741 aagggcgagt tatgcaaact gagcaacagc gagccgtaac acggctttgt atccagtgtg
    13801 gattatttct tttgcaacat ggtgcggaaa gcgcgttggt tgatgagctt tcctcacgac
    13861 tgggtcgggc gttggggatg gacagcgtcg aaagttctat ctcttcgaac gccatagtgc
    13921 tgacaaccat taaagatggg caatgcctga catcgacacg taaaaatcac gatcgcggca
    13981 ttaatatgca tgtggtgact gaagtccagc acattgtgat tctggcggag caccatctgc
    14041 tggattacaa aggcgtagag aaacgattta gccaaattca gccattacgt tacccaagat
    14101 ggctggtagc cttaatggtt ggcctttctt gcgcctgttt ctgcaaactc aataaaggtg
    14161 gctgggatgg tgccatcatc accttctttg ccagtacggc cgcgatgtat atccgccagc
    14221 tgctggcaca acgtcatctt catccgcaga tcaacttttg cctcaccgct ttcgccgcca
    14281 ccaccatttc cggattgctt ttgcaacttc ccactttcag caatacaccc actatcgcga
    14341 tggccgccag cgttctgctg ctggtgccgg gatttccgtt gattaatgcc gtcgccgata
    14401 tgtttaaagg ccacatcaat accggactgg cacgctgggc gatcgccagt ctgctgacac
    14461 tggctacctg cgtcggcgtg gtgatggcac tgacgatttg ggggctacgc ggatgggtgt
    14521 gatcgagttt ctgtttgcat tgacgcagga tatgatcctc gccgccattc cagcggtcgg
    14581 ctttgcgatg gtgttcaacg ttcccgttcg ggcattacgc tggtgtgcgc tgcttggcgc
    14641 gattggtcat ggttcacgaa tgatcttaat gaccagaggg ctgaatattg agtggtcaac
    14701 ctttatggcc tccatgctgg tcggcaccat tggtattcaa tggtcgcgct ggtatctggc
    14761 gcatccgaaa gtgtttaccg tggcggctgt tatccctatg ttcccgggca tatcggctta
    14821 taccgcaatg atttcggcgg taaaaatcag ccagttaggt tacagcgaac cgttgatgat
    14881 taccctgtta accaactttc ttacagcttc atcgattgtt ggtgcgttat ccatcggtct
    14941 ttccattcct ggattatggt tgtaccgcaa gcgccctcgc gtataaaatt gcctcgctta
    15001 aagcacacgg atgagagaca gcctcctctc ctccgtgtgt tactataaaa gttatctccc
    15061 ttctcgttca tcgttccata tttgagaaac agtatgtctt ccagagtttt gaccccggac
    15121 gtcgttggta ttgacgccct ggtacacgat caccaaaccg ttctggcaaa agctgaaggc
    15181 ggtgtggttg ccgtatttgc taacaatgcc ccggcgtttt atgccgtcac gcctgcacgc
    15241 ctggctgaac tgctggcgct ggaagaaaag ctggcgcgtc cgggaagcga tgtcgctctg
    15301 gacgatcaac tctatcagga accgcaagcc gctcccgttg ctgtacccat ggggaaattc
    15361 gccatgtatc cggactggca acccgatgcc gattttatcc gcctggcggc gctatggggt
    15421 gtggcactaa gagagccggt gaccaccgaa gaactggcct cattcattgc ctactggcag
    15481 gcggaaggta aagtctttca ccatgtgcag tggcaacaaa aactggcgcg cagcctgcaa
    15541 atcggtcgtg ccagcaacgg cggactgccg aaacgagatg tgaatacggt cagcgaacct
    15601 gacagtcaaa ttccaccagg attcagaggg taacgatgaa aaacgttggc gacctgatgc
    15661 aacgcctgca aaaaatgatg cctgcccata tcaaacctgc attcaaaacg ggtgaagaac
    15721 tactggcctg gcagaaagaa caaggagcga tccgctccgc cgctctcgaa cgtgaaaatc
    15781 gggcgatgaa aatgcagcgc acctttaacc gctccggtat tcggccactg catcagaact
    15841 gctcctttga gaactatcgc gttgagtgtg aagggcagat gaatgcgtta agcaaagcgc
    15901 gccagtacgt cgaagagttt gacggcaaca tcgccagctt catcttttct ggtaagccag
    15961 gaaccggcaa aaaccatctg gcggcggcaa tctgcaacga gctgctgcta cgcggtaaat
    16021 ccgtattgat catcaccgtg gccgatatta tgtcggcgat gaaagatacc ttcaggaata
    16081 gcggtaccag tgaagaacaa ctgcttaacg atctgagcaa cgttgatctg ctggtgatcg
    16141 atgagatcgg cgtgcagacc gaatcgaaat acgaaaaagt gatcatcaac cagatcgtcg
    16201 atcgccgctc ttcttccaaa cgcccaaccg ggatgctgac caacagtaat atggaagaga
    16261 tgaccaagtt gctgggcgaa cgcgtgatgg accgtatgcg cctgggtaac agtttgtggg
    16321 tgatcttcaa ctgggatagc taccgtagcc gggtaacagg taaagagtat taatccccgt
    16381 ttctggcggt atactgcgac acaattccac cttgagtaat gatgatggaa actgttaaac
    16441 atcttctgtg ctgtgccatt gccgccagcg cattaatttc caccggggtg catgctgcgt
    16501 cctggaaaga tgcgctctcc agcgccgcca gcgaacttgg caaccaaaac agcacgacac
    16561 aggaaggcgg ttggtcgctc gcgtcattaa ctaacttgct taacagcggg aaccaggcct
    16621 taagcgcaga taacatgaac aacgccgcag gcattctgca atactgcgcg aagcaaaagc
    16681 tggcgtcggt aaccgatgcc gaaaacatca agaaccaggt gctggaaaag ctgggcctga
    16741 acagtgaaga gcaaaaagaa gacaccaact atctggatgg cattcagggt ttgctgaaaa
    16801 ccaaagatgg tcagcaactc aatctggata acatcggaac gactccgctg gcagaaaagg
    16861 tgaaaaccaa agcctgcgat ctggtgttaa agcaggggct gaacttcatt tcctgaaccg
    16921 cgaaacgccg cgttttagct gttacccggc tgacgcggct ctctcctgcc cttttccctg
    16981 cttctggacg gttttccccc tgttacacgg gaagcgaccg cgatcaaaaa agtctgttta
    17041 taaactaatt cctaacaaca tcgcattttt ttgacactag aattgcagca atatggcgac
    17101 gccattacat tgttcttctc aaaaagctta aacgttggct aaacggcccg gtttagtgag
    17161 gatcgcccgt tgtcagaact actctctttc gccctttttc tcgcctctgt gctgatttac
    17221 gcatggaaag cgggacgtaa cacctggtgg tttgcagcca cattaacggt gctggggcta
    17281 tttgtcgttt taaatatcac cctgtttgcc agcgactatt ttactggcga tggtattaac
    17341 gacgcggttc tctatacctt aaccaacagc ctgaccggtg ctggcgtcag caaatacatc
    17401 ctgccgggta tcggcattgt gctggggctg acagcggtgt tcggtgcgct gggctggatc
    17461 ctgcgccatc gtcgccatca tccgcaccat tttggttaca gcctgctggc gctcttactg
    17521 gcgctgggtt cggtggacgc cagcccggca tttcgtcaga taacggaact ggtgaaatcc
    17581 cagtcacgcg atggcgaccc ggactttgcg gcttattata aagagccgtc gaaaactatc
    17641 cctgacccga aactcaacct ggtttatatc tacggcgaaa gtctcgagcg gacctatttt
    17701 gataacgaag ctttcccgga tctcacgcct gaactgggcg cgttgaaaaa tgaaggcctg
    17761 gatttcagcc acacgcagca gctgccagga acggattaca cgattgcggg catggtggct
    17821 tctcagtgcg gcataccgct gtttgccccc tttgaaggca acgcctccgc ctctgtctcc
    17881 agcttcttcc cgcagaacat ctgtctgggc gatatcctga aaaactcggg ttatcagaac
    17941 tatttcgtgc agggcgcgaa tctgcgtttt gccggtaaag atgtgttcct gaagtcgcat
    18001 ggcttcgacc acttatacgg ctcagaagag ctgaaaagcg tggtggccga cccgcactat
    18061 cgcaacgact ggggattcta cgacgatacc gttctcgatg aagcgtggaa aaagtttgaa
    18121 gagctttccc gctcaggtca gcgattctca ctgtttaccc tgacagtcga tacccatcac
    18181 ccggatggtt ttatctcgcg tacctgtaac cgcaaaaaat atgattttga cggtaagccg
    18241 aaccagtcat tcagcgcggt aagttgcagc caggagaata tcgcggcgtt tatcaacaaa
    18301 atcaaagcgt caccgtggtt taaagatacc gtcatcgtcg tctcttctga ccatttagcg
    18361 atgaacaaca cggcgtggaa atacctcaat aagcaggatc gcaataacct gttttttgtc
    18421 attcgtggcg acaagccgca gcaagagacg ctggcagtga agcgtaacac gatggataac
    18481 ggcgcgacgg tgctggacat tctcggtggc gataactatc tcggacttgg tcgtagcagt
    18541 ttatccgggc agtcgatgtc ggaaatcttc ctcaatatca aagagaaaac attggcgtgg
    18601 aagccggata tcatccgcct gtggaaattc cctaaagaga tgaaagagtt caccatcgac
    18661 cagcagaaaa acatgattgc cttctcgggt agccatttcc gtttgccgct gctgttgcgg
    18721 gtttcagaca aacgcgtgga accgctgccg gaaagcgaat actcagcacc gctgcgtttc
    18781 cagctggccg atttcgctcc acgcgacaat ttcgtctggg ttgaccgttg ctataagatg
    18841 gcacaactct gggctccgga actggcactc tccaccgact ggtgtgtctc gcaagggcag
    18901 cttggcggtc agcaaattgt tcaacatgtt gacaaaacaa catggcaggg caaaacggca
    18961 tttaaagata cggtcatcga catggcgcgt tataaaggca atgtcgatac gctgaaaatt
    19021 gttgataacg atattcgcta caaagccgac agtttcatct tcaacgtcgc cggtgcgcca
    19081 gaagaggtga aacagtttag tgggatttcc cgtccagagt cgtggggccg ctggtccaac
    19141 gcgcagctgg gcgatgaagt aaaaatcgag tacaagcatc cgctgccaaa gaaatttgac
    19201 ctggtgatta ccgccaaagc atacggcaat aacgccagcc gtcctattcc ggtacgcgta
    19261 ggcaatgaag aacaaaccct tgtgctgggc aatgaagtga ccaccaccac actgcatttc
    19321 gataacccaa ccgatgccga cacactggta attgtgccgc cggaacctgt ctcaaccaac
    19381 gaagggaata tcctcggaca ctcgccacgt aagctcggga tcggcatggt ggaaattaaa
    19441 gtggtggaac gtgaaggata attcctgact gatgtgtagg tcgcataagg tgcgacctac
    19501 acaccttctg cggcctacaa aacatcattg agaaacagaa aaaaacagcg cccaacactt
    19561 ccccggacgc tgcatggcaa ctttaataat ctcgccttat cagaaagtaa ttacaccctt
    19621 aatcaactca cgattgttaa tcacatcgcg ctcgtaggtt tctgccagcg tggcgaacgg
    19681 atagcgatgg gttaacatca tgtcagcagt gatttttcct tccgccatca gtcgaccgac
    19741 tttagcaaaa tcttccggcg tggcgttgcg gctacccatc atcgtcgttt cttttttatg
    19801 gaattccgga tcggagaact gcaactcacc tttaaacagg ccgacaaata ccaccgtgcc
    19861 gccgtgacga atcaaattca cggtgttatt catcgcatgt tgattacctg tcgcgtcgat
    19921 cactttctgc gccagcgaac caccaaactg cgcccgtagc tgcgcgtcaa aatcttcggc
    19981 tgacgggtcc agtaaaggta attccagacg cgttgccaca tgttcacggc gcgccggact
    20041 ggtatccgcc accaccacct gtgcgccatc ggctttagcg attgccgccg cgcccagacc
    20101 gattggcccc gccccgacca ccagcacctg ctcgccggga gcaatggctg cgcgacgcac
    20161 cgcatgagcg ctaatagcga aaggttcaat caatgctgcc gcctgcgggt caataccgtc
    20221 tgcgggcaaa atgttcgcca ccggcacgct caaatactca ctaaaaccgc catcctgatg
    20281 cacgccaatg actgaaattt tttcacagca attggtacgc ccgcttttac acgccgggca
    20341 ttgctgacag gcaacataag ggatcacagc aacttgcaga ccatttttaa gatcagcaat
    20401 atttttaccc agcctaacaa tctccccaca tatttcatgg cctaaaacac gtggataact
    20461 aaaaaatggt tgatttccac cccaggcatg aatatcggta ccgcaaatcc cgacagactt
    20521 aatttttatt aatgcttcat tgtcacccgg aataggtatc tcgcgttgtt tccagactaa
    20581 ttctttcggc tgctggcaaa ttaaaacatt catcgtagac atgattcggc tctccatttt
    20641 ttgttgcctt agatatcaat gaaaatgaaa aatggcagcg gaacggaaaa tctgttttgt
    20701 gaaaacacac gcataaaaat gttttaaatc gggttttaat ggactcacaa ggaggaaaat
    20761 atgagtcgtt cacaaaattt acgccacaat gtgattaacc aggtcattga tgatatggcg
    20821 cggggtcata tcccttcccc acttccatcg caaagtgcgc tggcggaaat gtacaacatc
    20881 agccgcacca cagtgcgtca tattctcagc catttacgcg aatgcggcgt cttgacgcag
    20941 gttggaaacg actatgttat tgcgcgtaaa cctgaccacg atgacggttt cgcctgtact
    21001 accgcttcaa tgagtgaaca aaacaaagtg tttgagcagg cttttttcac gctgataaac
    21061 cagcgccagt tacgcccagg ggaaactttt tctgaactgc aactggctcg ggccgcgggt
    21121 gtcagcccgg tggttgtaag agaatatctt ttaaaattcg gccgttataa tcttattcaa
    21181 agcgaaaagc gcggccagtg gagcatgaag caattcgatc aatcctacgc cgagcagctg
    21241 tttgagctac gcgaaatgct cgaaacacat tcacttcagc actttctcaa cctgcctgat
    21301 catgatcccc gctggctgca ggcgaaaacc atgctcgaac gtcatcggct actgcgtgac
    21361 aacatcggca atagctttcg catgttctcg caacttgaca gagattttca ctccttactg
    21421 ctttcagctg ccgacaatat cttttttgat caatcgcttg agatcatctc agtcatcttt
    21481 cattttcact atcaatggga cgaaagcgat cttaaacagc gcaatatcat tgccgtcgat
    21541 gagcatatga ccattctcag cgctctgatt tgccgcagtg acctcgatgc cacccttgcg
    21601 ctccgtaacc atttgaattc agctaaacaa tcaatgattc gatccattaa tgagaacacg
    21661 cgttatgctc attaagtacg gattaaaaac agcaaactat tagcgggtgc acggttttat
    21721 caaaagataa ataccgggaa attcccgctt acctatgctc acaatcagtc gactaaaaat
    21781 gtttttgtga gcggtagtaa agtcctaaaa ctttaacctg ccgttaatgt caaccatgcg
    21841 taatgcacaa ttacgtaaac aattaaaatt ataaatacag gagtccggcg tggaaaaaga
    21901 aaatatcacc atcgatccgc gttcttcatt tactccatct tcgtcggcag atattcccgt
    21961 gccaccagat ggattagttc aacgcagtac ccgaattaaa cgcattcaaa ccaccgccat
    22021 gttgttatta ttttttgcgg cggtaatcaa ttatctcgac cgcagttcgc tgtcggtagc
    22081 aaatttaacg attcgtgaag aattgggatt aagtgccact gaaatcggcg ctttgctctc
    22141 cgtgttttca ctcgcttacg ggattgcgca acttccttgc ggcccactat tggatcgtaa
    22201 aggcccacgc ctgatgctgg gactgggaat gttcttctgg tcactgttcc aggcaatgtc
    22261 tggcatggtg cacaacttta cgcagttcgt gttggtgcgt atcggtatgg ggattggtga
    22321 agcgccgatg aacccatgcg gtgtaaaagt cattaacga
//
LOCUS       DAJVSY010000062        21835 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.062, whole genome shotgun sequence.
ACCESSION   DAJVSY010000062 DAJVSY010000000
VERSION     DAJVSY010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 21835)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21835)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21835
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.062"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..786)
                     /locus_tag="OQQ19_002076"
     CDS             complement(<1..786)
                     /locus_tag="OQQ19_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001373617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803705.1"
                     /translation="MSLLFAERPLVINTQLAMKIGLNEAIVLQQLHYWLRDTNSGMEC
                     DGVRWIYNTTEQWLEQFPFWSESTLKRAFASLKTLGLLRCEKLNKSKRDMTNFYTINY
                     GSELLDDGKLSESIGSKCAAPSGQNDTMEEVKMKRSIGSKRPNVIGSKWPDDPTENTT
                     EITTENKNTFRPEASQPDPQTAEQDFLIRHPGAVVFSAKKRQWGSQEDLACAQWIWGR
                     IVGLYEQAASDDGEIMRPKEPNWTVWANDVRTMRMLDGRSHMNR"
     gene            complement(767..1288)
                     /locus_tag="OQQ19_002077"
     CDS             complement(767..1288)
                     /locus_tag="OQQ19_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001578395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803706.1"
                     /translation="MKITPEQAREALDAWICRPGMTQEQATILITEAFWALKERPNID
                     VQRVTDEGGAVDQRALGVNRVKIFERWKAIDTRDKREKFTALVPAIMEAIRINDFRLY
                     REISDGKSITYMIAGLNKEYGDVVESGLLFADPAVVDRETDELIEKAIAFKLAYRQQY
                     QQKAGWNYEPSFC"
     gene            complement(1272..1499)
                     /locus_tag="OQQ19_002078"
     CDS             complement(1272..1499)
                     /locus_tag="OQQ19_002078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000920568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1803707.1"
                     /translation="MFKSDVINFYGTKAKVAKAAGVDPSAVSQWQELVPEGRAMRLQE
                     ASGGELLYDPKVYDEYRKTKRAGRLNNENHS"
     gene            1577..1984
                     /locus_tag="OQQ19_002079"
     CDS             1577..1984
                     /locus_tag="OQQ19_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001003380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1803708.1"
                     /translation="MNEKTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTA
                     PRGQNLHRLAEVLQCSPTWILFGDEDKTPAPPVSLDSTLDLSEDELEMLRLYRALPKS
                     EQQAQLSELRARVENFNRLFTELLEARKRNKHQ"
     gene            2177..2332
                     /locus_tag="OQQ19_002080"
     CDS             2177..2332
                     /locus_tag="OQQ19_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1391 family protein"
                     /protein_id="HCS1803709.1"
                     /translation="MDTIDLGNNESLVYGVFPNQDGTFTAMTYTKSKTFKTENGARRW
                     LERNSGE"
     gene            2492..2710
                     /locus_tag="OQQ19_002081"
     CDS             2492..2710
                     /locus_tag="OQQ19_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310310.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803710.1"
                     /translation="MQKREPVIIAPDYTDDELYEWMHQKINAAQDLKWANEARAKQAE
                     NLSALEQDITNLEKAAALSIARMITYPR"
     gene            3279..3467
                     /locus_tag="OQQ19_002082"
     CDS             3279..3467
                     /locus_tag="OQQ19_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000854559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division inhibition protein DicB"
                     /protein_id="HCS1803711.1"
                     /translation="METLLPNVNTSEGCFEIGVNISNPVFTEDAINKRKHERELLNKI
                     CILSMLARLRPIQKGCWQ"
     gene            3464..3655
                     /locus_tag="OQQ19_002083"
     CDS             3464..3655
                     /locus_tag="OQQ19_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1482 family protein"
                     /protein_id="HCS1803712.1"
                     /translation="MNTAFALVLTVFLVSGEPVDIAVSVHRTMQECVTAATEQKIPGN
                     CYPVDKVIHQDNNEIPAGL"
     gene            3748..6219
                     /locus_tag="OQQ19_002084"
     CDS             3748..6219
                     /locus_tag="OQQ19_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exoribonuclease"
                     /protein_id="HCS1803713.1"
                     /translation="MSKVFICAAIPDEQAIKEEGAVAVATAIEAGDERRARAKFHWQF
                     LEHYPAAQDCAYKFLVCEDKPGIPRPALDSWDAEYMQENRWDEESASFVPVETESDPM
                     NVTFDKLAPEVQNAVMVKFDTCENITVDMVISAQELLQEDMATFDGHIVEALMKMPEV
                     NAMYPELKLHAIGWVKHKCKPGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARA
                     RTNQQHSENSTGKISPVIAAIHREYKQTWKTLDDELAYALWPGDVDAGNIDGSIHRWA
                     KNEVIDNDREDWKRISASMRKQPDALRYDRQTIFGLVRERPIDIHKDPVALNKYITEY
                     LTTKGVFEDEGRNQSATDTLSSPVPETDAVETAIPGNEKTECKVEVEPSVEREGPFYF
                     LFTDKDGEKYGRANKLSGLEKALALGATEITKEEYFARKNGTYSGSQQNTGASDTTAQ
                     PEPVKVTADEVNKIMQAANISQPDADKLLAASRGEFVAGISDPNDPKWVKGIETRDSV
                     NQNQQESEQNDQKAEQNSPNTQQNEPETKQPEPVAQQEPEKVCTACGQSGGGNCPDCG
                     AVMGDATYQETFDEENQVEVQENDPKEMEGAEHPHKENAGSAQDHASDSETGETADPL
                     ITMNGHHVITSTSRTCDHLMIDLETMGKNPDAPIISIGAIFFDPQTGDMGPEFSKTID
                     LETAGGVIDRDVIKRWLKQSREAQSAIMTDEIPLDDALLQLREFIDENSGEFFVQVWG
                     NGANFDNTILRRSYERQGIPCPWRYYNDRDVRTIVELGKAIDFDARTAIPFEGERHNA
                     LDDARYQAKYVSVIWQKLIPNQADF"
     gene            6284..6532
                     /locus_tag="OQQ19_002085"
     CDS             6284..6532
                     /locus_tag="OQQ19_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excisionase"
                     /protein_id="HCS1803714.1"
                     /translation="MARLILLTEWAKEEFSEPVPTPSTLSKYAKAGMIFPLPKKVGRR
                     WRVDPQARFVGMVNKPEVIATDHPALKRILEDGAPAKI"
     gene            6510..7640
                     /locus_tag="OQQ19_002086"
     CDS             6510..7640
                     /locus_tag="OQQ19_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage integrase Arm DNA-binding
                     domain-containing protein"
                     /protein_id="HCS1803715.1"
                     /translation="MARPRKYKTNVPGLSPYFDKRNNKVYWRYRHPITGKNHGLGSID
                     QKLAETIAAEANSRLARQQMEQMLSLQEKIISDTGGSSTVTIFLNNYRKIQQERYENG
                     EIKLNTLKQKAAPLRVFDERFGTRPLDAITVKDVVSVLEEYKARGHNRMGQIFRKVLI
                     DVFREAQQTGDVPPGFNPAESAKKPQVRISRQRLTFDEWMMIYNAAEKDGYFLQRGML
                     LALMTGQRLSDICKMQFSDIRDGYLHVEQQKTGTRIAIPLALRCDKLNLTLDDVVSSC
                     RDCVLSPWLLHHHHAKGTAKRGGMVKPATLTVAFKKARDSVDYNWRANGTPPSFHEQR
                     SLSERLFREQGVDTKILLGHSNQKMTDIYNDARGKEWKKLVI"
     gene            complement(7686..8324)
                     /gene="ompW"
                     /locus_tag="OQQ19_002087"
     CDS             complement(7686..8324)
                     /gene="ompW"
                     /locus_tag="OQQ19_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein OmpW"
                     /protein_id="HCS1803716.1"
                     /translation="MKKLTVAALAVTTLLSGSAFAHEAGEFFMRAGSATVRPTEGAGG
                     TLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPP
                     TLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVG
                     VDYLINRDWLVNMSVWYMDIDTTAKYKSGVTTVKDSVRLDPWVFMFSAGYRF"
     gene            8564..8653
                     /locus_tag="OQQ19_002088"
                     /pseudo
     CDS             8564..8653
                     /locus_tag="OQQ19_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460692.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
     gene            8681..9424
                     /locus_tag="OQQ19_002089"
     CDS             8681..9424
                     /locus_tag="OQQ19_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0259 family protein"
                     /protein_id="HCS1803717.1"
                     /translation="MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPS
                     DAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVIL
                     IIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLVVVPGIIMAILLAL
                     APVMLVQDKMGIFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEI
                     GAVLANTLSNLISAVLLIYLFRLYMLIRQ"
     gene            9454..9993
                     /locus_tag="OQQ19_002090"
     CDS             9454..9993
                     /locus_tag="OQQ19_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HCS1803718.1"
                     /translation="MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRF
                     RKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQ
                     RMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLI
                     FTLLSGIYIYRHMPQEDKS"
     gene            10098..10496
                     /gene="yciA"
                     /locus_tag="OQQ19_002091"
     CDS             10098..10496
                     /gene="yciA"
                     /locus_tag="OQQ19_002091"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HCS1803719.1"
                     /translation="MSTTHNVPQGDLVLRTLAMPADTNANGDIFGGWLMSQMDIGGAI
                     LAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVQKGTTSVSINIEVWVKKVASE
                     PIGQRYKATEALFKYVAVDPEGKPRALPVE"
     gene            complement(10536..11264)
                     /gene="tonB"
                     /locus_tag="OQQ19_002092"
     CDS             complement(10536..11264)
                     /gene="tonB"
                     /locus_tag="OQQ19_002092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707161.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein TonB"
                     /protein_id="HCS1803720.1"
                     /translation="MTSMTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAP
                     AQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK
                     PKPVKKVQEQPKRDVKPVESRPASPFENTALARLTSSTATAATSKPVTSVASGPRALS
                     RNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRY
                     EPGKPGSGIVVNILFKINGTTEIQ"
     gene            11479..11775
                     /locus_tag="OQQ19_002093"
     CDS             11479..11775
                     /locus_tag="OQQ19_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415767.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HCS1803721.1"
                     /translation="MLYVIYAQDKADSLEKRLSVRPAHLARLQLLHDEGRLLTAGPMP
                     AVDSNDPGAAGFTGSTVIAEFESLEAAQAWADADPYVAAGVYEHVSVKPFKKVF"
     gene            12075..13328
                     /gene="kch"
                     /locus_tag="OQQ19_002094"
     CDS             12075..13328
                     /gene="kch"
                     /locus_tag="OQQ19_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="voltage-gated potassium channel protein"
                     /protein_id="HCS1803722.1"
                     /translation="MSHWATFKQTATNLWVTLRHDILALAVFLNGLLIFKTIYGMSVN
                     LLDIFHIKAFSELDLSLLANAPLFMLGVFLVLNSIGLLFRAKLAWAISIILLLIALIY
                     TLHFYPWLKFSIGFCIFTLVFLLILRKDFSHSSAAAGTIFAFISFTTLLFYSTYGALY
                     LSEGFNPRIESLMTAFYFSIETMSTVGYGDIVPVSESARLFTISVIISGITVFATSMT
                     SIFGPLIRGGFNKLVKGNNHTMHRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP
                     EDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCLAILALSDNDADNAFVVLSAKD
                     MSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNGEEINNDMLVSMLL
                     NSGHGIFSDNDEQETKADSKESAQK"
     gene            complement(13383..13556)
                     /locus_tag="OQQ19_002095"
     CDS             complement(13383..13556)
                     /locus_tag="OQQ19_002095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciY family protein"
                     /protein_id="HCS1803723.1"
                     /translation="MKRSRTEVGRWRMQRQASRRKSRWLEGQSRRNMRIHSIRKCILN
                     KQRNSLLFAIYNI"
     gene            13699..15159
                     /gene="cls"
                     /locus_tag="OQQ19_002096"
     CDS             13699..15159
                     /gene="cls"
                     /locus_tag="OQQ19_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HCS1803724.1"
                     /translation="MTTVYTLVSWLAILGYWLLIAGVTLRILMKRRAVPSAMAWLLII
                     YILPLVGIIAYLAVGELHLGKRRAERARAMWPSTAKWLNDLKACKHIFAEENSSVAAP
                     LFKLCERRQGIAGVKGNQLQLMTESDDVMQALIRDIQLARHNIEIVFYIWQPGGMADQ
                     VAESLMAAARRGIHCRLMLDSAGSVAFFRSPWPELMRNAGIEVVEALKVNLMRVFLRR
                     MDLRQHRKMIMIDNYIAYTGSMNMVDPRYFKQDAGVGQWIDLMARMEGPIATAMGIIY
                     SCDWEIETGKRILPPPPDVNIMPFEQASGHTIHTIASGPGFPEDLIHQALLTAAYSAR
                     EYLIMTTPYFVPSDDLLHAICTAAQRGVDVSIILPRKNDSMLVGWASRAFFTELLAAG
                     VKIYQFEGGLLHTKSVLVDGELSLVGTVNLDMRSLWLNFEITLAIDDKGFGADLAAVQ
                     DDYISRSRLLDARLWLKRPLWQRVAERLFYFFSPLL"
     gene            15194..15523
                     /locus_tag="OQQ19_002097"
     CDS             15194..15523
                     /locus_tag="OQQ19_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309775.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciU family protein"
                     /protein_id="HCS1803725.1"
                     /translation="MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEE
                     RGGAELFDPVEDWQEHVDFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKL
                     CHIIWRE"
     gene            complement(15576..16580)
                     /gene="oppF"
                     /locus_tag="OQQ19_002098"
     CDS             complement(15576..16580)
                     /gene="oppF"
                     /locus_tag="OQQ19_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppF"
                     /protein_id="HCS1803726.1"
                     /translation="MNAVTEGRKVLLEIADLKVHFEIKDGKQWFWQPPKTLKAVDGVT
                     LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGHVAWLGKELLGIKPDEWRAVRSD
                     IQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGLLPNLINR
                     YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSL
                     IFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTRALMSAVPIPDPDLE
                     KNKTIQLLEGELPSPINPPSGCVFRTRCPIAGPECAKTRPVLEGSFRHAVSCLKVDPL
                     "
     gene            complement(16577..17590)
                     /gene="oppD"
                     /locus_tag="OQQ19_002099"
     CDS             complement(16577..17590)
                     /gene="oppD"
                     /locus_tag="OQQ19_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppD"
                     /protein_id="HCS1803727.1"
                     /translation="MSVIETATVPLAQQQADALLNVKDLRVTFSTPDGDVTAVNDLNF
                     SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEHELNKLR
                     AEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNMSKAEAFEESVRMLDAVKMPEARK
                     RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF
                     NTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPVHPYSIGLLNAVPRLD
                     AEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSSAPPLEEFTLGRLCACFKPVE
                     ELL"
     gene            complement(17602..18510)
                     /gene="oppC"
                     /locus_tag="OQQ19_002100"
     CDS             complement(17602..18510)
                     /gene="oppC"
                     /locus_tag="OQQ19_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000979653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppC"
                     /protein_id="HCS1803728.1"
                     /translation="MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFIHNRAAVASLM
                     VLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMESGHYFGTDSSGRDLLVRVAIGGR
                     ISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF
                     GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNV
                     LGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPA
                     GFLVVTLFCFNFIGDGLRDALDPKDR"
     gene            complement(18525..19445)
                     /gene="oppB"
                     /locus_tag="OQQ19_002101"
     CDS             complement(18525..19445)
                     /gene="oppB"
                     /locus_tag="OQQ19_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppB"
                     /protein_id="HCS1803729.1"
                     /translation="MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPE
                     VMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGA
                     AAFFLAVILGVSAGVIAALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHW
                     LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRR
                     IILRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVL
                     SLTILVGALTILFNAIVDVLYAVIDPKIRY"
     gene            complement(19531..21162)
                     /gene="oppA"
                     /locus_tag="OQQ19_002102"
     CDS             complement(19531..21162)
                     /gene="oppA"
                     /locus_tag="OQQ19_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707150.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein OppA"
                     /protein_id="HCS1803730.1"
                     /translation="MTNITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRN
                     NGSEVQSLDPHKIEGVPESNISRDLFEGLLVSDLDGHPAPGVAESWDNKDAKVWTFHL
                     RKDAKWSDGTPVTAQDFVYSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKPITDL
                     GVKAIDDHTLEVTLSEPVPYFYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYT
                     LKDWVVNERIVLERSPTYWNNAKTVINQVTYLPIASEVTDVNRYRSGEIDMTYNNMPI
                     ELFQKLKKEIPDEVHVDPYLCTYYYEINNQKPPFNDVRVRTALKLGMDRDIIVNKVKA
                     QGDMPAYGYTPPYTDGAKLTQPEWFGWSQEKRNEEAKKLLAEAGYTADKPLTINLLYN
                     TSDLHKKLAIAASSLWKKNIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPT
                     SFLNTMLSNSSMNTAHYKSPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVPV
                     YYYVNARLVKPWVGGYTGKDPLDNTYTRNMYIVKH"
     gene            21446..21742
                     /locus_tag="OQQ19_002103"
     CDS             21446..21742
                     /locus_tag="OQQ19_002103"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803731.1"
                     /translation="MRFLLANTFCKIVKQFSFIDRIRIYSLHPCLNKHLSIQSNRDWL
                     SMSIFSDYSFSIEMHNNLTIDYYLALSSTKGSGITNIISIILQQAQDYDVAKIT"
BASE COUNT         5772 a         5304 c         5135 g         5624 t
ORIGIN      
        1 gcggttcatg tggcttctgc catccagcat ccgcattgtg cgcacatcat tggcccagac
       61 agtccagtta ggctcttttg gtcgcatgat ctcgccatca tcactggcgg cctgttcgta
      121 gagacccacg atccgccccc atatccactg cgcacacgcc agatcctcct ggctacccca
      181 ctggcgtttt ttcgcactaa acacaactgc gccagggtgc cggattaaaa aatcctgttc
      241 agccgtctgc gggtccggtt gcgaagcttc cggacgaaaa gtgtttttat tctctgtagt
      301 aatctctgtt gtattctctg taggatcatc gggccatttt gacccgatga cattgggtcg
      361 ttttgaacca atggagcgtt tcattttgac ctcttccatc gtgtcatttt gacctgatgg
      421 agcggcgcat tttgaaccga tggattcgct caatttgcca tcatctaaaa gctcgctccc
      481 atagttaatc gtgtagaaat tggtcatatc gcgctttgat ttattgagct tttcacaacg
      541 caagagcccc agcgttttca gacttgcaaa cgcgcgcttt aacgttgact ctgaccagaa
      601 tgggaactgt tccagccatt gttccgttgt gttgtaaatc cagcgaacac catcacattc
      661 catgccggaa ttggtatctc tcaaccagta atgcaactgc tgcaacacaa tggcttcatt
      721 taagccaatc ttcatcgcaa gctgtgtgtt tataaccagt gggcgttcag caaaaagaag
      781 gctcataatt ccatccagct ttttgttggt attgctgtcg atacgcaagt ttgaaagcaa
      841 ttgctttttc tataagttcg tcagtttcac gatccactac ggcaggatca gcaaaaagca
      901 gtccggactc caccacatcg ccatattctt tgtttaaccc ggcgatcatg tacgtgatgc
      961 tttttccgtc actaatttca cgatacaacc tgaaatcatt aatccggata gcctccataa
     1021 ttgcaggcac tagcgccgtg aacttttcac gcttatccct ggtgtcgata gccttccagc
     1081 gttcgaatat cttcactcga ttaacgccaa gcgctcgctg atcaaccgcg ccaccttcat
     1141 ctgtgacacg ctgaacatcg atgttcgggc gctctttcaa agcccagaat gcttcagtga
     1201 ttaatatcgt cgcctgctcc tgtgtcattc ctggtcgaca tatccaggca tccagagcct
     1261 cacgagcctg ttcaggagtg attttcattg ttcaaccgcc ccgcccgctt cgtcttacga
     1321 tattcgtcat aaaccttggg atcatacaga agctcgccgc cagatgcctc ctgtagacgc
     1381 atcgcgcgac cttcaggaac tagctcttgc cattgagaaa cagcagatgg gtcaacgcca
     1441 gcagctttcg ctactttggc tttcgtaccg taaaaattaa ttacgtctga tttaaacatc
     1501 gcacctccaa tattgagttt tctcaatgct aatcactcaa ggaatctcaa gtcaaggatt
     1561 attaagatat ctaaatatga acgagaaaac tttaggtcaa cgcattagag aaagacgtaa
     1621 gcaggtaggc ttaagtcaaa acggtttaag caaagctgct ggcgtatctg gctcatcaat
     1681 ttcattatgg gaaagtgacc atacagcccc gcgcgggcaa aatttgcatc gcctcgccga
     1741 ggtattgcaa tgttcaccaa cctggatact gtttggcgac gaggacaaaa caccagctcc
     1801 ccctgtttca ctcgatagta ccctagactt atcggaagat gagttagaga tgctgcgttt
     1861 gtatcgcgca cttcctaaat cagagcaaca agcacaactc agcgaactcc gcgcccgcgt
     1921 tgagaatttt aatcgcctgt tcaccgagct attagaggct cgcaaacgca acaagcatca
     1981 ataatcatcc cttcacaaaa ttttaaagcc ttacatttca atgtattggc tttatcttgc
     2041 gccagcactt gagttttctc atcaaaaaac cttgacgaaa aataatgaga aaactaaatt
     2101 acctccatca acacaccgca cggtgttctc cgcaaacagt tccgctaccc cggcgttaag
     2161 gggaaatgag gtcagcatgg atactatcga tcttggcaac aacgaatctc tggtgtacgg
     2221 cgtgtttcca aaccaggacg gcacgttcac cgcaatgacg tataccaaaa gcaaaacgtt
     2281 taaaaccgaa aatggtgccc gtcgctggct ggaaagaaac tcaggtgagt gatatggatt
     2341 tcgacacaat catggaaaag gcttacgaag aatacttcga aggccttgcc gaaggcgaag
     2401 aagctctcag cttcagtgag tttaaacagg cgctttccag ctcggcaaaa tctaacggct
     2461 gataagcgaa gcagcaccgc gaggaatcag tatgcagaaa cgagaacccg tcatcatcgc
     2521 gccagactat accgatgatg aactttatga gtggatgcac cagaaaatta atgcagcgca
     2581 ggatctgaaa tgggccaatg aagccagggc taagcaggct gaaaatctgt ccgctctgga
     2641 gcaggatatc actaatctgg aaaaagcagc ggcattaagc attgccagaa tgattacata
     2701 cccgcgttaa tagctaacca acgaagctaa ggttggtaat taaggagttc tccacgggtg
     2761 aggtggagtg cgtgcgccgg acacgggtga gcatccggca ctgacagttt actgaaagga
     2821 tatttccctg aaaagtcaga ccataacgcg aaagcgcacg gcgaggtagc tggttcatag
     2881 atagcctgtc gttaaatttt cgtcgaccgt gcgcttccgg ttgtggcaat ccgcgaaatg
     2941 gcgcggcggt aagtatggcg gggttattcc ttccaccgtt gaggacaccg ggttgtcagg
     3001 ttgaccatac gcttaagtga caaccccgct gcaacgccct ctgttatcaa ttttctggtg
     3061 acgtttggcg gtatcagttt tactccgtga ctgctctgcc gcccttttta aagtgaattt
     3121 tgtgatgtgg tgaatgcggc tgagcgcacg cggaacagtt aaaaccaaaa acagtgttat
     3181 gggtggattc tctgtatccg gcgttaattg ttaactggtt aacgtcacct ggaggcacca
     3241 ggcaccgcat cacaaaattc attgttgagg acgcgataat ggaaacgtta ttaccaaacg
     3301 ttaatacgtc tgaaggttgt tttgaaattg gtgtcaatat cagtaaccct gtatttactg
     3361 aagatgccat taacaagaga aaacacgaac gggagctatt aaataaaata tgcattcttt
     3421 caatgctggc ccgtttacgt ccgatacaaa aaggatgctg gcaatgaata cagcatttgc
     3481 acttgttctg acagtttttc ttgtttccgg agagccagtt gatattgcag tcagtgttca
     3541 caggacaatg caggagtgtg tgactgcagc aaccgaacag aaaattcccg gtaactgtta
     3601 cccggtcgat aaagttattc accaggataa taacgaaatc ccggcaggtc tttaaaacag
     3661 ttccgtaata aatatccggt ttcattctta tatgccagca atggcaggga tttgttcacc
     3721 cttaaatctg taatgaggta aaacaaaatg agtaaagtct ttatttgcgc cgccattccg
     3781 gacgaacagg caataaagga agaaggtgcc gtcgctgtag ccacagccat tgaagccggt
     3841 gatgaacgtc gcgcccgcgc aaaatttcac tggcaattcc tggagcatta tccggctgct
     3901 caggactgcg cttataaatt tcttgtctgc gaggataaac ccggtatacc ccgccctgcc
     3961 ctcgattcct gggatgctga atatatgcag gaaaaccgct gggatgagga gtctgcttcc
     4021 tttgtcccgg ttgagactga atccgatccg atgaacgtca cttttgacaa gctggcccct
     4081 gaagtacaga acgctgtcat ggttaagttc gacacatgtg aaaacatcac cgttgatatg
     4141 gttattagcg cacaggaatt gttgcaggaa gacatggcaa cattcgacgg acatatcgtt
     4201 gaagcgttga tgaaaatgcc agaagttaac gccatgtatc cggagcttaa gctgcatgcc
     4261 atcgggtggg ttaagcataa atgtaagcct ggtgccaaat ggcccgaaat tcaggcagag
     4321 atgcgcatct ggaaaaaacg tcgcgaaggt gaacgcaagg aaaccggaaa atacacgtct
     4381 gttgttgatc tcgcccgcgc cagaaccaat caacagcaca gtgaaaattc aacaggaaaa
     4441 atcagcccgg tcattgctgc cattcatcgc gaatacaagc agacatggaa aacactggat
     4501 gacgaactgg cctacgctct ctggcctggt gatgtggatg ccggaaacat tgacggcagc
     4561 atccatcgct gggcaaaaaa tgaagttatc gacaacgacc gcgaagactg gaagcgtatc
     4621 tcggcatcaa tgcgcaaaca gcctgatgcc cttcgctacg accgccagac tatttttggc
     4681 cttgtccgtg aacgtccgat cgacattcac aaagaccctg tggcactgaa caaatacatt
     4741 actgaatacc tgactacaaa gggcgtgttt gaagatgaag gaagaaatca gagcgcaact
     4801 gatactctct cgtcgccagt accagaaact gatgcagtgg aaacggcaat tccgggcaac
     4861 gaaaaaaccg aatgcaaagt ggaagtcgaa ccatctgtag agcgtgaggg gccgttctac
     4921 ttcctcttca ccgacaagga tggcgaaaaa tacggtcgcg caaacaaact ttctggtctg
     4981 gaaaaagcac tagccttggg agctacggaa atcacaaaag aggaatactt cgcacgtaaa
     5041 aacggcacgt actcaggttc acaacaaaat actggtgcat ctgacacgac cgcacaacca
     5101 gagccggtaa aagttaccgc tgacgaagta aacaaaatta tgcaggcagc caatatcagc
     5161 cagcctgacg ccgataagtt gcttgctgcc tctcgcggag aatttgttgc agggattagc
     5221 gacccgaatg atccgaaatg ggtaaagggg attgaaaccc gcgattctgt aaaccagaac
     5281 cagcaagaat cggaacagaa cgaccagaaa gcggaacaaa acagcccaaa tacgcaacaa
     5341 aacgagccag aaacgaaaca acctgagcca gtagcgcaac aggaaccgga aaaagtctgc
     5401 accgcctgcg gtcaaagcgg tggcggcaac tgccctgatt gtggcgcggt gatgggtgac
     5461 gcaacatacc aggaaacatt cgatgaagag aatcaggttg aagttcagga aaatgatccg
     5521 aaggaaatgg aaggcgctga acatccacac aaggagaatg ctggtagcgc tcaggatcac
     5581 gccagcgata gtgaaactgg cgagacggca gatcccttaa ttacgatgaa cggtcatcac
     5641 gttatcacat ccaccagcag gacgtgtgac catctaatga tcgaccttga aaccatggga
     5701 aaaaatcctg atgccccgat tatctcaata ggtgcaatat ttttcgatcc gcaaaccgga
     5761 gatatgggac cggaatttag taagactatc gatctggaaa ctgctggcgg agtcattgat
     5821 cgtgacgtca ttaaaaggtg gctgaagcaa tcacgtgaag cgcagtctgc cattatgacc
     5881 gatgaaatcc cgttagatga tgcactgtta caattgcggg aatttatcga cgaaaactcc
     5941 ggtgaatttt ttgttcaggt ctggggaaat ggagccaact tcgacaacac gattttgcgc
     6001 cgttcatacg aacggcaggg gatcccctgc ccatggcgtt actacaacga tcgcgatgta
     6061 cgcacaatcg ttgagctggg gaaagccata gacttcgatg ccagaacggc tattccattc
     6121 gaaggtgagc gccataatgc acttgatgac gcccgttacc aggcaaaata cgtttcagtt
     6181 atctggcaaa aactgatccc gaatcaggct gatttttaat gttcaacccc ggtcgttgcc
     6241 caccagctat agtggcggcg accatgatta gcgaacgacg ctcatggcaa gacttattct
     6301 gctcactgag tgggcaaaag aggaattcag tgaaccggtc ccaactccga gtacgttaag
     6361 taaatacgct aaagccggaa tgatatttcc tctccccaaa aaagttggaa gacgctggcg
     6421 agtggatccg caagctcgct ttgtcggaat ggtaaacaag ccggaggtga tcgccacaga
     6481 tcaccctgct ttgaagagga tactggaaga tggcgcgccc gcgaaaatat aaaaccaatg
     6541 ttccgggatt atctccgtat tttgacaaaa gaaataacaa agtttactgg cgttacaggc
     6601 atcccataac aggcaaaaat cacggtctcg gcagtattga ccagaaactg gcagaaacta
     6661 ttgcagcaga agcgaacagc cgtcttgccc ggcagcaaat ggaacaaatg ctcagtctgc
     6721 aggagaaaat tattagtgat accggcggtt catcaaccgt taccattttt ctgaataatt
     6781 acagaaaaat tcaacaggaa agatatgaaa acggcgagat caaactcaac acgctgaaac
     6841 agaaagcggc ccctctcagg gtatttgatg aacgttttgg caccagaccg ttagatgcca
     6901 taaccgtaaa agatgtggta tcagtactgg aagagtacaa ggccagagga cataacagaa
     6961 tgggacaaat tttcaggaag gtactgatcg atgttttccg ggaagctcag caaacgggcg
     7021 atgtcccgcc aggctttaac cctgcagaat cggcaaaaaa accgcaggtg cggatatcaa
     7081 gacagcgact gacttttgat gagtggatga tgatttataa cgcagcggaa aaggatggtt
     7141 actttttaca gcgcggtatg ctgctggcac tgatgacagg ccagcgcctt tcagatattt
     7201 gcaaaatgca attttcggat atccgggatg gttatcttca tgtcgaacag caaaaaacag
     7261 gaacccggat tgccatccct ctggctctgc gttgcgataa attaaatctc accctagatg
     7321 atgtggtgtc atcctgccgc gattgcgttc ttagtccgtg gctattgcac caccatcacg
     7381 cgaaagggac agctaagcgc ggcgggatgg ttaagccagc aacattaacc gttgcattta
     7441 aaaaagcccg ggattctgtg gattacaact ggcgtgctaa tggcacccca ccctctttcc
     7501 atgagcagag atctttatca gagcgattgt tcagagagca gggggttgat accaaaattt
     7561 tgctgggcca ttcgaatcaa aaaatgaccg atatttacaa cgacgcacgc ggtaaggaat
     7621 ggaaaaaact ggtcatttga tgaccagttt tgcagagggg ttttgcagag gttttgcaga
     7681 gaaaattaaa aacgatatcc tgcggagaac ataaacaccc acggatccag tcgtaccgag
     7741 tcttttacgg tagtaacacc agatttgtac ttagccgtgg tatcgatatc catgtaccac
     7801 actgacatgt taaccaacca gtcacggtta atcagataat caacccccac ctgcccggca
     7861 gctccccagg aatctttcag actgagatcg gaaagccctg cctctttgcc atgatcgtta
     7921 aatccattat caaagaaggt ggtgtagtta atacctgccc caacgtaagg acggaatttg
     7981 ctgctggcat caccaaaata ccactgcgcc atcagtgttg gcggcagatg gtgaacggtt
     8041 gcaatatcgc cggtcgcccg ggtgccgatt ttatggcgga acggcgtcgc tgccagtaat
     8101 tccacaccaa tgttgtcggt cgccatataa gtaaacgtca agcccagttg agtgttattg
     8161 gtcacgctga atccacccag acttcctaac gtaccaccag caccttctgt tggacgtacg
     8221 gttgcagaac ctgcacgcat aaaaaattcg cctgcttcat gcgcaaaggc actgccagag
     8281 agaagagttg ttactgccaa agccgccact gttaactttt tcatatccgc tccgtcgtta
     8341 tggttataaa aacgtgacga atatacctac attggagtaa caaatgatcc tacatagatc
     8401 acattacata tgataattca ccctttattg atctggatta atttagaagt tgcattgaga
     8461 atcctggtta acgtgattta aatcaatttt taaatatttt cgctacgcaa atattaactc
     8521 gatcgccact tgccgcggtt tgcccacgcc tgaaggccag caattacctc cgctttacaa
     8581 agatatgctt ttccatacaa gacctgatgc tgccacccga ggcttaacca gggtacaatt
     8641 gcccgctaat taacacctgc ataaaactca aggagagtgc atgtctatca cggcgcagtc
     8701 cgtataccgt gacaccggaa atttcttccg taatcaattt atgaccattc tgttggtatc
     8761 gttgctatgt gcgtttatca cagtggtgtt agggcatgtt ttctcaccca gtgatgcaca
     8821 gcttgcgcag ctcaatgacg gcgtgcccgt tagcggcagt agtgggttgt tcgacctggt
     8881 tcagaatatg tcaccggaac agcaacaaat tttgctgcag gcttcagcgg cgtccacttt
     8941 ttcaggatta atcggtaacg ccattctcgc cggaggcgta atattaatta tccagctggt
     9001 gtctgcgggt cagagagtca gtgcgctgcg agctattggt gccagtgcac cgatattgcc
     9061 aaagttattt attctgattt ttctgactac ccttttagta cagattggca tcatgctagt
     9121 ggtcgttccg ggaattatca tggccatttt actggccctg gcaccggtga tgctggtaca
     9181 ggacaaaatg ggcatttttg cctcgatgcg tagcagtatg cggctgactt gggcgaatat
     9241 gcgtctggtg gcacccgcag tactgagctg gttgctggca aaaacactgt tgctgctttt
     9301 tgcctcttct tttgccgcat taaccccgga aattggtgcc gtactggcga acaccttgag
     9361 caacctgatt tcagccgtat tgctcatcta tctgttccgt ctgtatatgt tgattcgcca
     9421 ataaccttaa gcatttgatt acggaatcgt aaaatgaagc agtttcttga ttttttaccg
     9481 ctggttgtct ttttcgcgtt ttacaagatt tatgacatct atgcggctac tgcggcgctg
     9541 atcgtcgcca cggcgattgt gcttatctat agctgggttc gctttcgtaa ggttgagaag
     9601 atggccctga tcacttttgt tctggtggtc gtcttcggtg gcttgacgct gttcttccac
     9661 aatgatgagt ttattaaatg gaaggttaca gtcatttatg ctctgtttgc gggagccctg
     9721 ttagtcagcc aatgggtgat gaaaaagccg ctaattcagc ggatgctggg taaagaactc
     9781 acgctgccgc aaccggtatg gtcgaagctg aatctggcct gggctgtttt ctttatcctt
     9841 tgcggtctgg caaacatcta catcgcattc tggctgccgc aaaatatttg ggtcaacttt
     9901 aaagtctttg gactgaccgc ccttacctta atcttcacat tgttaagcgg tatctatatc
     9961 taccgccaca tgccgcagga agataaatcc taaccagact gccagtcctt cggggctggc
    10021 gctgtatctc ctctgttctc ctcaggaaaa tcatagtagc atcgcgcctg tgattttcct
    10081 tttaagtcgg ttttaccatg tctacaacac ataacgtccc tcagggcgat cttgttttac
    10141 gtactttagc catgcccgcc gataccaatg ccaatggtga catctttggt ggttggttaa
    10201 tgtcacaaat ggatattggc ggcgctattc tggcgaaaga aattgcccac ggtcgcgtag
    10261 tgaccgtgcg ggttgaagga atgactttct tacggccggt tgcggtcggc gatgtggtgt
    10321 gctgctatgc acgctgtgtc cagaaaggga cgacatcggt cagcattaat attgaagtgt
    10381 gggtgaaaaa agtagcgtct gaaccaatcg ggcaacgcta taaagcgaca gaagcattat
    10441 ttaagtatgt cgcggttgat cctgaaggaa aacctcgcgc cttacctgtt gagtaatagt
    10501 caaaagcctc cggtcggagg cttttgactt tctgcttact gaatttcggt ggtgccgtta
    10561 attttaaaca ggatattcac cacaatccca ctgcctggct tacccggctc ataacgccat
    10621 ctgcgcatcg catttttcac ctcacgctca aacatgttcg caggcttggc tgagaggatt
    10681 tgtacgttat ccacgcgacc atccggcgtg acgtcaaatt taactttaac ctgcccttca
    10741 atgcgcaatg cctgtgctcg tgccggatac tgcggctgat tacggcttaa tgcgcgtggt
    10801 cctgaagcca cactggtaac cggcttgctg gttgcagccg ttgctgtact tgatgtcagg
    10861 cgtgccagtg ccgtattttc aaacggtgat gccggacgcg actctacggg tttgacatcg
    10921 cgttttggct gctcctgtac ctttttcacc ggcttcggtt ttggcttagg tttcggcttc
    10981 ggcttttcaa tgaccaccgg tgcttctttt ggcggttcgg ggatcggctc aggttccggt
    11041 tctggctcta ccaccggctc cggtggcggc tgaacggctt gtggcggttc gagatcagca
    11101 ggcgcaacca tcgtgacaga aattggctgc gcaggcgcag gtagttcaat aacctgatgt
    11161 accgaggtat agagcagacc cgccacaaca gcaccatgaa tgcagaccga aagtaacgtc
    11221 ggccagggga agcggcgagg taaatcaagg gtcattgaag tcataatcat ttcagtagaa
    11281 aaaccaagcc tcgattttaa atgcaaatag caatcatatt caataaggca agacgatcag
    11341 gatcagtgaa aatgtcattt ttgccgtaat taaccttact ttatgcatgg tcttaacaaa
    11401 gacatcatct ttccgttgca gatcttcgcc ctttcaaata acgtacttta caactttccc
    11461 gaacaaggag ttgtgcccgt gttgtatgtt atttacgctc aagacaaagc tgatagcctc
    11521 gaaaaacgcc tttccgttcg tccggcacat ttagcacgtt tacagttact gcatgatgaa
    11581 ggtcgtttgt tgacagctgg tccaatgcca gcggtagaca gtaacgatcc aggggctgcg
    11641 ggatttactg gctcaaccgt tattgctgaa tttgaatcgc tggaagcagc tcaggcctgg
    11701 gccgatgctg acccgtacgt agcggcagga gtctatgaac acgtttcagt gaaaccattt
    11761 aagaaagtgt tctgaataga gattcaatat ttaagggcac ggtttttgca accgtgttct
    11821 tgtttggcct ttccttatag ccggtcagtg cattcaccac cacaagcaga taataacttt
    11881 atctgtattt ctttatatga tgtgagcata ttcaggaaaa atgacctttc ctgaggtaca
    11941 gttgctcgct caaaaccttt gattactgcg gataaagtca tctactattg tttaacacat
    12001 tcacgcgctg catgtatgtt cagaaaatgt gcacgctaag ataattaaac aaaattgtgg
    12061 ttacagaggt atcagtgagt cactgggcta cattcaaaca aacagcaaca aatttatggg
    12121 tgaccctacg gcacgacatt ctcgcgctgg ccgtcttttt aaatggattg cttattttta
    12181 aaacaatcta tggtatgtcg gtcaatttgc tagatatttt ccatatcaaa gcattttcag
    12241 agttggatct ctccttgctg gcaaacgccc cactatttat gctcggcgtc tttcttgtcc
    12301 tgaactccat tggcttactg ttccgggcaa agctcgcatg ggcaatcagt atcattttgt
    12361 tgttgatagc gctaatttat accctgcatt tttatccctg gttgaaattt agtattggat
    12421 tttgcatttt tacgctggtg tttttgctga tactgcgcaa agacttctcc cacagtagcg
    12481 ccgcagccgg gacaattttt gcatttatta gtttcacgac attactgttt tactcaacct
    12541 acggtgcgct ttatttaagc gaaggtttta atccgcgaat agaaagtttg atgaccgcgt
    12601 tctatttttc gatagaaacc atgtcaaccg tcggctatgg cgatattgtc cctgtttctg
    12661 aatcagcacg attgttcact atttcggtca ttatttccgg tattaccgtt tttgccacat
    12721 ctatgacctc aatttttggt ccgcttatcc gcgggggatt caacaaactt gtaaaaggaa
    12781 acaatcatac aatgcatcgt aaagatcatt ttattgtttg cggacattcg attctcgcca
    12841 tcaatacgat tctgcaactg aatcaacgcg gacaaaacgt aacggttatc agcaacttgc
    12901 ctgaagatga tatcaagcaa cttgagcaac gcttaggcga taacgctgat gttatccccg
    12961 gtgacagtaa tgacagttca gtattaaaga aagcgggaat cgatcgttgc ctggccattc
    13021 tggcgctgag tgataacgat gcagataacg cgtttgttgt actctcggca aaagatatga
    13081 gcagtgatgt caaaacagtt ctcgccgtca gtgatagcaa aaacctgaat aagattaaga
    13141 tggtacatcc ggatatcatt ctctcaccgc aactgtttgg cagcgaaatt ctggcgcgag
    13201 ttttaaatgg tgaagagatt aataatgata tgctcgtttc aatgttgttg aactccggtc
    13261 atggcatttt cagcgataac gatgaacaag aaacgaaagc tgacagtaaa gaatcggcgc
    13321 aaaaatagag tttaaagatg gaggagtaaa cttattgggc accgcaatgg tgcccagtac
    13381 atttagatat tgtagatcgc aaacaataac gagttacgct gtttgtttag aatgcacttc
    13441 ctgatgctgt ggatacgcat atttcggcgc gattgcccct caagccaacg cgatttacgt
    13501 cggctagcct gacgctgcat gcgccagcgc cccacttccg ttctactccg cttcatgtta
    13561 actactctat gcaataacag aatggtcatt atacccccgc ccccgacgct gaccagtgct
    13621 tttcccgcgt ttttatttgc cagatgaatc catatgcgta aactcataac aatgcgcttt
    13681 caaaaggatt tctaatctat gacaaccgtt tatacgttgg tgagttggtt ggccattctg
    13741 ggatactggt tgctcattgc aggcgtaact ttacgcattc taatgaaacg acgcgcagtt
    13801 ccctccgcga tggcctggct gttgattatt tacattctgc cgttagtcgg aattattgcc
    13861 tatcttgccg ttggcgagct ccatttaggc aaacgccgcg ctgagcgcgc cagagcgatg
    13921 tggccttcca ccgcaaaatg gcttaacgac cttaaagcct gtaagcatat cttcgccgaa
    13981 gaaaatagca gtgtcgctgc gccattattc aagctttgcg agcgtcgtca ggggatcgct
    14041 ggggtcaaag ggaatcagct acaactgatg accgagtcag atgatgtgat gcaggcgtta
    14101 atccgcgaca tccagctcgc gcgccataat attgagattg tgttttatat ctggcagccc
    14161 ggcggcatgg cggaccaggt ggctgaatca ttaatggccg ctgcgcgacg cggcattcat
    14221 tgccgattga tgctcgactc cgccgggagt gtggcttttt tccgcagccc gtggcccgag
    14281 ctaatgcgta atgccggtat tgaagtggtc gaagccttaa aggtcaatct gatgcgtgtg
    14341 tttttacgcc gtatggacct gcgccaacat cgcaagatga tcatgatcga taattacatc
    14401 gcgtacaccg gcagcatgaa tatggtcgat cctcgctact tcaaacaaga tgcgggcgta
    14461 gggcaatgga ttgatctgat ggcgcgtatg gaaggcccca tcgccaccgc gatggggatt
    14521 atttattcct gcgactggga gattgaaacc ggaaaacgta ttctgccgcc accaccagat
    14581 gtcaatatta tgccgtttga acaggccagc ggtcacacca ttcacacaat tgcttctggc
    14641 cccggctttc cggaagatct cattcaccag gcattattga ctgcggctta ttcggcgcgt
    14701 gaatatttga tcatgaccac gccctacttt gtgccaagcg atgatttact tcatgcgatt
    14761 tgcacggcgg cacagcgcgg ggtggatgtc agtattatcc ttccgcgaaa aaatgactcg
    14821 atgctggtcg gctgggccag tcgcgcattc tttacggaac ttcttgctgc tggggttaaa
    14881 atttatcagt ttgaaggcgg gttactgcat accaagagcg tgctggtcga tggcgaacta
    14941 agtctggttg gcaccgttaa ccttgatatg cgtagtctgt ggctgaattt cgagattacc
    15001 ctggcaatcg acgataaagg ttttggtgca gaccttgccg ccgttcagga cgattatatt
    15061 tcgcgttcac gtctgctcga tgcccgttta tggctaaaac gtccattatg gcaacgtgtc
    15121 gccgagcgac tgttttactt cttcagcccg ttgctgtaaa acgtctccaa cagaggttaa
    15181 acaggtagtg actatggata tggatctaaa caatcgcctg actgaagatg aaacgcttga
    15241 gcaggcctac gatatttttc tcgaactggc tgccgacaat ctcgacccag ctgatgttct
    15301 gctgttcaat cttcagtttg aagagcgcgg cggcgcggag ttattcgatc cggtggaaga
    15361 ctggcaggaa catgttgatt tcgatttgaa cccggacttt tttgccgaag tggtgattgg
    15421 tctggcggac agtgaggatg gtgaaatcaa cgatgttttc gcccgcattc tgttatgccg
    15481 cgaaaaagat cacaaacttt gccatatcat ctggcgggaa taaataatcg ctttcggcgt
    15541 gaaaaagggc tgacaactgt cagcccttat tgtgtttaaa gcggatcgac tttcaggcaa
    15601 gaaacggcgt gtctgaaact cccttccagc acaggacgtg ttttggcgca ctccggaccg
    15661 gcaatcgggc aacgggtacg gaaaacacaa ccggaaggcg ggttgatcgg cgacggtaat
    15721 tccccttcca gtaactggat ggttttgttc ttctccagat ccggatcagg tatggggact
    15781 gccgacatca atgccctggt gtaaggatgt agtggattgt ggtagacctc atcataggtc
    15841 cccagttcta ccgcatggcc gagatacatc accaacacac gatcggaaat gtgttttacc
    15901 acggccaggt catgagcaat aaaaattaat gacaatccca tctcacgttg cagctgctgg
    15961 agcaggttga ccacctgcgc ctgaattgac acgtccagcg ccgacaccgg ctcatcacag
    16021 ataatcagct tcggttcaag aataagagca cgagcaatcc cgatacgctg gcactgccca
    16081 ccggagaact catgcggata gcggttaatc aggttaggca ataacccgac tttcagcatc
    16141 atcgccttca cgcgctcgcg aacttcctga cgtgacattt tcggatgata agtacgcagt
    16201 ggttcagcga tgatctcgcc gatggtcatg cgcgggttta gcgatgccaa cggatcctgg
    16261 aaaatcatct gaatatcact gcgaacggca cgccattcat cgggcttaat gcccagcaac
    16321 tctttaccta accaggcaac atgaccgtcg gtcgctttaa ccaggccaat gatggcgcga
    16381 gcaaaggtgg acttaccgca tcccgattcc cctaccacac ctaatgtttc cccttcatac
    16441 aggcgaagcg tgacaccatc gacggctttg agcgttttcg gcggttgcca gaaccactgt
    16501 ttgccatctt tgatttcaaa gtgcactttc agatcggcga tttcaaggag gacttttctt
    16561 ccttcggtta cagcattcat aacagttcct ccaccggttt aaagcaagca cacagacggc
    16621 caagcgtaaa ctcttccagc ggcggtgcgc tactacaaat ttccatcgca tgcggacaac
    16681 gtggctggaa cgggcaacct ttcggtaatc gcagcaggtt tggcggatta cccgggatgg
    16741 tcaacattgt ttcaccttcc gcatcgagac gcggcaccgc gttgagcaaa ccgatagaat
    16801 aaggatgaac gggttgataa aagacatcgc gcgcgttgcc atattccatc gtgcgcccgg
    16861 cgtacattac cagcactttg tcacagatcc ccgccaccac gccaagatcg tgggtaatca
    16921 taatgatggc ggtattaaat tcccgtttca gttcatttaa tagcgtcatg atctgcgcct
    16981 gtacggtgac gtccagcgct gtagtgggtt catccgcaat cagcagctta ggtcgacata
    17041 gcaatgccat cgcaatcata actcgctgac gcatgccgcc agaaaactcg tgcgggtaca
    17101 ttttcatgcg tttacgtgct tccggcattt ttaccgcatc gagcatccgc accgactctt
    17161 caaacgcctc agctttgctc atgttcttat gcagcatcag cacttccatc aactgctcac
    17221 cgacgcgcat atagggattc aacgaagtca ttgggtcctg aaaaatcatt gagatttgtt
    17281 cagcgcgcag tttattgagt tcatgctctg gcaaattgag gatttcacgc ccattgaagg
    17341 ttgccgatcc gccaatacgt ccgttggcag ccaacaggcc catcaacgca aatgcagttt
    17401 gcgatttacc cgaaccagac tcacctacaa tacccagcgt ttctccggca cgtagggaaa
    17461 aattcaaatc attgaccgcc gtgacgtcgc cgtccggggt actaaaggtg acacgcaaat
    17521 ctttcacgtt cagcagtgcg tcagcctgtt gttgtgcgag cggcacagtt gcagtttcaa
    17581 ttacgctcat ggctgcactc cttaacgatc tttcgggtcg agggcatcac gcaagccatc
    17641 gccgataaag ttgaaacaaa acagcgtcac cacgaggaat cccgctggga acaacaataa
    17701 ccatggagag acttccatcg agttcgcgcc atcactcagc aatgcacccc agctgcttaa
    17761 cggctcttgc gtacccaacc ccaggaagct aaggaaagat tcaaagagga tcatgctggg
    17821 caccagaagt gatgcgtaga ccaccaccac accgagtaca ttcggcacaa tgtggcgaat
    17881 aacaatgccc gatgtcgata caccgccaac ttgtgccgcc tcaataaact ctttgcgctt
    17941 cagactcagg gtttgcccac gcacaatacg agccatatcc agccaggaaa ccatgcctat
    18001 cgccacgaaa atcagcagga tgttttgacc gaaaaaggtc accagcaaaa tgacgaagaa
    18061 catgaatggg aaggagttga ggatttccag cagacgcatc attaccgaat ccactttacc
    18121 gcccagataa ccggaaagcg aaccataaag tgtcccgacg accacagcca ccagtgccgc
    18181 agcaacaccg accatgagtg agatacgccc accaatcgca acgcgcacaa gcaggtcgcg
    18241 accggatgag tcagtaccaa agtagtgacc ggactccata tccggggcgc tggacatcat
    18301 cgcccagtca gtatcgtcat aggcaaactg ggaaagcatc ggtgccagga ttacaaataa
    18361 cgcgatcagc accagcacca tcagactggc aaccgccgca cggttatgaa taaaacgtcg
    18421 acgtgcgtcc tgccacaagc tgcgcccttc gacctccagc ttttcactga aattttccag
    18481 cgtctcgctg tttttcttac ttaacatcat cgcgagctcc agtatcagta acggattttc
    18541 gggtcgataa ccgcatatag cacatcgaca atggcattaa acaaaatggt taaagcacca
    18601 accaggatgg tcaggcttaa cactaaggaa tagtcacggt tcaatgcgcc attaacgaac
    18661 agttgtccaa tccccggcaa accataaatg gtttcgataa ccatagaacc ggtaataatg
    18721 ccgacaaatg cggggcccat ataagagagc acgggtaaca gagcaggttt taatgcgtga
    18781 cgtaaaatga tccgccgcat aggtaaccct ttcgcccggg cagtacgaat aaaattggag
    18841 tgtaatactt caatcataga gccacgggta atacgcgcaa tactggcgat ataagcgagt
    18901 gacaacgcca ccatcggcaa tatcatgaat ttaagcgccc caccattcca gccaccgccc
    18961 ggcagccaat gcaaaatgat cgcaaatatc atgactaata atggtgcaac cacaaaactg
    19021 gggataacaa ccccggtcat tgccagcccc atcacggtat agtcccattt ggtgttttgt
    19081 tttaatgcgg caataacgcc agcactaaca cccagtatta ccgcaaggaa aaatgctgcg
    19141 gctcccagtt tggcagaaac gggaaaactg gatgcaacca agtcattgac cgaataatct
    19201 ttatatttaa acgatggacc gaaatcaccg tgcgccagtt gtttcaggta gctgaaatac
    19261 tgtgtcatga tcggatcatt aagatgatat ttcgcttcga tattggccat cacttctggc
    19321 ggtaaagtac gttcgccggt aaaagggctt cccggcgcga ggcgcatcat aaagaacgaa
    19381 atagtaataa gaataaatag cgtcggaatc gcttccagac agcgacgtag aataaatttt
    19441 aacattgccc taccttctgg cctgtgcctt ctgtaatgcg ataaaaatca gacaccgtgg
    19501 agcaggacac tcctgcccca cgtattgcca ttagtgcttc acaatgtaca tattccgggt
    19561 ataggtatta tccagcggat ctttgccggt atagccacca acccacggtt tcaccagacg
    19621 cgcattcacg tagtaataaa caggaacaat ggccgaatcc ttatccagct gttgttctgc
    19681 tttagtgtac agagctgtgc gctgcgcctc gtcagtcact ttcagcgttt ccgccataat
    19741 gctgtcaaag gccgggctct tataatgcgc ggtattcatc gagctgttcg aaagcatggt
    19801 gttcaggaag gaagttggtt cgttgtagtc agcacaccag cctgcacggg ccacatcaaa
    19861 agtaccctgg tgacgggtgt cgaggaacgt tttccactcc tggttaacca gtttgacgtt
    19921 tacaccaatg tttttcttcc acaatgaaga ggcagcaatc gccagctttt tatgcagatc
    19981 ggaggtgtta tacaacaggt tgattgtcaa cggtttgtct gcggtataac ccgcttcagc
    20041 cagcagtttt ttcgcttctt cgttacgttt ttcctggctc cagccaaacc attccggctg
    20101 agtcaatttt gcgccatcag tatacggtgg agtgtaacca taggcgggca tgtcgccctg
    20161 cgctttcact ttattaacaa tgatatcgcg gtccatacct agtttcagtg cggtacgcac
    20221 acgcacatcg ttgaatggcg gtttctggtt gttaatttcg taatagtaag tgcacaggta
    20281 tggatcaacg tgaacttcgt ccgggatctc ttttttcagc ttctggaaca attcgatcgg
    20341 catgttgtta taagtcatgt cgatttcacc actacggtag cggttgacat cggtaacttc
    20401 agaagcaata ggcaaatagg ttacctggtt aataacggtt ttcgcgttgt tccagtaggt
    20461 cgggctgcgt tcaagaacga ttcgttcgtt tacgacccaa tcttttaagg tataggcacc
    20521 gttggtgacg atattaccag gctgggtcca tttttcgccg aatttctcga tagcggcttt
    20581 tggcaccggt gaagttgatg ggtgaacaag taatttatag aagtacggaa cgggttcact
    20641 taaggtgact tctaatgtgt gatcatcaat agctttcaca ccgagatcgg taatcggttt
    20701 tttcccttca agaatttcat caataccggc gatatgccca tattgcagat aactggcata
    20761 cggagaagca gtgttcggat caacagaacg ttgccagcta tacacaaagt cttgtgctgt
    20821 gactggcgta ccatcagacc atttcgcatc tttacgcaaa tggaaggtcc agactttcgc
    20881 gtctttatta tcccaggatt cagcgacgcc aggtgccgga tgaccgtcaa gatcgctgac
    20941 cagtaagcct tcaaacaggt ctcggctgat attagactcc ggaacacctt caattttgtg
    21001 cggatctaat gactgaactt ctgaaccatt gttacgtacc agcgtttgtt tttccgccag
    21061 tgtgacgcct gcgggtacat cagctgccag cgcgacattc cctgccatta gcgcagccag
    21121 aacgccagct gctactaaac ttctcttggt gatgttggtc attgtttttt ggactccctc
    21181 attataatta ctggtattaa ccagcatgtg taatcccgga ttgggaccct gcacaggctc
    21241 ggagactttc tgctgtcagg ttactttatc gttacggatt gctatcaccg actttattta
    21301 ttctggtgat tcagacgatc accttatgtc gattcgtact gtgtctcccc tgtcgagaca
    21361 cattattctt tcgcgacgct ctttaattgt taattattct cattaccaat aaagaatcgt
    21421 ctggcggttg cccggaaagt actaaatgcg gttcttactc gccaatacat tttgcaaaat
    21481 tgttaagcaa ttctctttta ttgaccgtat cagaatctat agcttgcatc catgccttaa
    21541 caaacatctt tcaattcaat caaatagaga ttggctaagc atgtctatct tttctgatta
    21601 cagtttcagt attgaaatgc acaataattt aacaattgat tattatttag cactttcctc
    21661 taccaaaggc agtggaatta ctaatatcat ttcaattatt cttcagcaag cccaggatta
    21721 tgatgtggcg aaaataacat gatggtgagg agaagcagtt aagaaaatcc ttataactaa
    21781 ctgtaatttg agaagaatat ttttacctat tccttttgct tttgataact gcgcg
//
LOCUS       DAJVSY010000063        20907 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.063, whole genome shotgun sequence.
ACCESSION   DAJVSY010000063 DAJVSY010000000
VERSION     DAJVSY010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20907
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.063"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(157..702)
                     /gene="hemG"
                     /locus_tag="OQQ19_002104"
     CDS             complement(157..702)
                     /gene="hemG"
                     /locus_tag="OQQ19_002104"
                     /EC_number="1.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone-dependent protoporphyrinogen IX
                     dehydrogenase"
                     /protein_id="HCS1803732.1"
                     /translation="MKTLILFSTRDGQTREIASYLASELKELGIQTDVANVHRIEEPQ
                     WENYDRVVIGASIRYGHYHSAFQEFVKKHATRLNSMPSAFYSVNLVARKPEKRTPQTN
                     SYARKFLMSSQWRPDRCAVIAGALRYPRYRWYDRFMIKLIMKMSGGETDTRKEVVYTD
                     WEQVANFAREIAQLTNKPTLK"
     gene            complement(714..2165)
                     /gene="trkH"
                     /locus_tag="OQQ19_002105"
     CDS             complement(714..2165)
                     /gene="trkH"
                     /locus_tag="OQQ19_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkH"
                     /protein_id="HCS1803733.1"
                     /translation="MHFRAITRIVGLLVILFSGTMIIPGLVALIYRDGAGRAFTQTFF
                     VALAIGSMLWWPNRKEKGELKSREGFLIVVLFWTVLGSVGALPFIFSESPNLTITDAF
                     FESFSGLTTTGATTLVGLDSLPHAILFYRQMLQWFGGMGIIVLAVAILPILGVGGMQL
                     YRAEMPGPLKDNKMRPRIAETAKTLWLIYVLLTVACALALWFAGMDAFDAIGHSFATI
                     AIGGFSTHDASIGYFDSPTINTIIAIFLLISGCNYGLHFSLLSGRSLKVYWRDPEFRM
                     FIGVQFTLVVICTLVLWFHNVYSSALMTINQAFFQVVSMATTAGFTTDSIARWPLFLP
                     VLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGNRALPER
                     ILEAVWGFFSAYALVFIVSMLAIIATGVDDFSAFASVVATLNNLGPGLGVVADNFTSM
                     NPVAKWILIANMLFGRLEVFTLLVLFTPTFWRE"
     gene            complement(2204..2818)
                     /locus_tag="OQQ19_002106"
     CDS             complement(2204..2818)
                     /locus_tag="OQQ19_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMPACT family protein"
                     /protein_id="HCS1803734.1"
                     /translation="MESWLIPAAPVTVVEEIKKSRFITMLAHTDGVEAAKAFVESVRA
                     EHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKPMLAQLMGSGIGEITAVVVRY
                     YGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYSQLTGIEALLGQCDG
                     KIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIEE"
     gene            complement(2818..4149)
                     /gene="pepQ"
                     /locus_tag="OQQ19_002107"
     CDS             complement(2818..4149)
                     /gene="pepQ"
                     /locus_tag="OQQ19_002107"
                     /EC_number="3.4.13.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidase"
                     /protein_id="HCS1803735.1"
                     /translation="MESLASLYKNHIATLQERTRDALARFKLDALLIHSGELFNVFLD
                     DHPYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYLPVDYWHNVEPLPTSFWTE
                     DVEVIALPKADGIGSLLPAARGNIGYIGPVPERALQLGIEASNINPKGVIDYLHYYRS
                     FKTEYELACMREAQKMAVNGHRAAEEAFRSGMSEFDINIAYLTATGHRDTDVPYSNIV
                     ALNEHASVLHYTKLDHQAPEEMRSFLLDAGAEYNGYAADLTRTWSAKSDNDYAQLVKD
                     VNDEQLALIATMKAGVSYVDYHLQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMP
                     HGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRCTRILQPGMVLTIEPGIYFIES
                     LLAPWREGQFSKHFNWQKIEALKPFSGIRIEDNVVIHENNVENMTRDLKLA"
     gene            4339..6535
                     /gene="fadB"
                     /locus_tag="OQQ19_002108"
                     /pseudo
     CDS             4339..6535
                     /gene="fadB"
                     /locus_tag="OQQ19_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418288.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid oxidation complex subunit alpha FadB"
     gene            6545..7708
                     /gene="fadA"
                     /locus_tag="OQQ19_002109"
     CDS             6545..7708
                     /gene="fadA"
                     /locus_tag="OQQ19_002109"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase FadA"
                     /protein_id="HCS1803736.1"
                     /translation="MEQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPA
                     LEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAA
                     RMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLARMHGI
                     SREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEA
                     LATLRPAFDPVNGTVTAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCN
                     PSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINL
                     NGGAIALGHPLGCSGARISTTLLNLMERKDVQFGLATMCIGLGQGIATVFERV"
     gene            complement(7900..8601)
                     /gene="fre"
                     /locus_tag="OQQ19_002110"
     CDS             complement(7900..8601)
                     /gene="fre"
                     /locus_tag="OQQ19_002110"
                     /EC_number="1.5.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-flavin reductase"
                     /protein_id="HCS1803737.1"
                     /translation="MTTLSCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDER
                     DKRPFSMASTPDEKGFIELHIGASEINLYAKAVMDRILKDYQIVVDIPYGEAWLRDDE
                     ERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLSELEALSLKHP
                     GLRVVPVVEQPEAGWRGRTGTVLTAVLQDHGTLAEHDIYIAGRFEMAKIARDLFCSER
                     NAREDRLFGDAFAFI"
     gene            complement(8647..10140)
                     /gene="ubiD"
                     /locus_tag="OQQ19_002111"
     CDS             complement(8647..10140)
                     /gene="ubiD"
                     /locus_tag="OQQ19_002111"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HCS1803738.1"
                     /translation="MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLR
                     AGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPK
                     GFRDLFDKLPQFKQVLNMPTKRLRGVPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLIT
                     WGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVS
                     VALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGY
                     IEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGV
                     ALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQF
                     MYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSK
                     MGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA"
     gene            10307..10795
                     /gene="rfaH"
                     /locus_tag="OQQ19_002112"
     CDS             10307..10795
                     /gene="rfaH"
                     /locus_tag="OQQ19_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription/translation regulatory transformer
                     protein RfaH"
                     /protein_id="HCS1803739.1"
                     /translation="MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRT
                     AVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK
                     DIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR
                     KL"
     gene            complement(10792..11574)
                     /gene="tatD"
                     /locus_tag="OQQ19_002113"
     CDS             complement(10792..11574)
                     /gene="tatD"
                     /locus_tag="OQQ19_002113"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' ssDNA/RNA exonuclease TatD"
                     /protein_id="HCS1803740.1"
                     /translation="MFDIGVNLTSSQFAKDRDDVVARAFDAGVNGLLITGTNLRESQQ
                     AQKLARQYSSCWSTAGVHPHDSSQWQAATEEAIIELAVQPEVVAIGECGLDFNRNFST
                     PEEQERAFVAQLRIAAELNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREE
                     MQACVARGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDFTPKPSS
                     RRNEPAHLHHILQRIAHWRGEDAAWLAATTDANVKTLFGIAF"
     gene            complement(11616..12392)
                     /gene="tatC"
                     /locus_tag="OQQ19_002114"
     CDS             complement(11616..12392)
                     /gene="tatC"
                     /locus_tag="OQQ19_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatC"
                     /protein_id="HCS1803741.1"
                     /translation="MSVEDTQPLITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHL
                     VSAPLIKQLPQGSTMIATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKH
                     ERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMA
                     LFMAFGVSFEVPVAIVLLCWMGITSPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLL
                     AIPMYCLFEIGVFFSRFYVGKGRNREEENDAEAESEKTEE"
     gene            complement(12395..12910)
                     /gene="tatB"
                     /locus_tag="OQQ19_002115"
     CDS             complement(12395..12910)
                     /gene="tatB"
                     /locus_tag="OQQ19_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HCS1803742.1"
                     /translation="MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLAT
                     TVQNELIQELKLQEFQDSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPE
                     KASDEAHTIHNPVVKDNEAAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKT
                     AAPSPSSSDKP"
     gene            complement(12914..13183)
                     /gene="tatA"
                     /locus_tag="OQQ19_002116"
     CDS             complement(12914..13183)
                     /gene="tatA"
                     /locus_tag="OQQ19_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HCS1803743.1"
                     /translation="MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMS
                     DDEPKQDKTSQDADFTAKTIADKQADTNQEQAKTEDAKRHDKEQV"
     gene            complement(13262..14902)
                     /gene="ubiB"
                     /locus_tag="OQQ19_002117"
     CDS             complement(13262..14902)
                     /gene="ubiB"
                     /locus_tag="OQQ19_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HCS1803744.1"
                     /translation="MTPGEVRRLYFIIRTFLSYGLDELIPKMRITLPLRLWRYSLFWM
                     PNRHKDKLLGERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDG
                     KLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDIL
                     PVIKADLKLIYRLARWVPRLLPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRR
                     NFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFF
                     TQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFN
                     RDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTAR
                     RFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLESWIKDQVGIPALVRAF
                     KEKAPFWVEKMPELPELVYDSLRQGKYLQHSVDKIARELQSNHVRQGQSRYFLGIGAT
                     LVLSGTFLLVSRPEWGLMPGWLMAGGLIAWFVGWRKTR"
     gene            complement(14899..15504)
                     /gene="ubiJ"
                     /locus_tag="OQQ19_002118"
     CDS             complement(14899..15504)
                     /gene="ubiJ"
                     /locus_tag="OQQ19_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis protein UbiJ"
                     /protein_id="HCS1803745.1"
                     /translation="MPFKPLVTAGIESLLNTFLYRSPALKTARSRLLGKVLRVEVKGF
                     STSLILVFSERQVDVLGEWAGDADCTVIAYASVLPKLRDRQQLTALIRSGELEVQGDI
                     QVVQNFVALADLAEFDPAELLAPYTGDIAAEGISKAMRGGAKFLHHGIKRQQRYVAEA
                     ITEEWRMAPGPLEVAWFAEETAAVERAVDALTKRLEKLEAK"
     gene            complement(15518..16273)
                     /gene="ubiE"
                     /locus_tag="OQQ19_002119"
     CDS             complement(15518..16273)
                     /gene="ubiE"
                     /locus_tag="OQQ19_002119"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HCS1803746.1"
                     /translation="MVDKSQETTHFGFQTVAKEQKADMVAHVFHSVASKYDVMNDLMS
                     FGIHRLWKRFTIDCSGVRRGQTVLDLAGGTGDLTAKFSRLVGETGKVVLADINESMLK
                     MGREKLRNIGVIGNVEYVQANAEALPFPDNTFDCITISFGLRNVTDKDKALRSMYRVL
                     KPGGRLLVLEFSKPIIEPLSKAYDAYSFHVLPRIGSLVANDADSYRYLAESIRMHPDQ
                     DTLKAMMQDAGFESVDYYNLTAGVVALHRGYKF"
     gene            complement(16368..17795)
                     /gene="rmuC"
                     /locus_tag="OQQ19_002120"
     CDS             complement(16368..17795)
                     /gene="rmuC"
                     /locus_tag="OQQ19_002120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HCS1803747.1"
                     /translation="MDFSIMVYAVIALVGVAIGWLFASYQHAQQKAEQLAEREEMVAE
                     LSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIR
                     QMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSF
                     GKEAQERHTLTHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASG
                     LREGYEYETQVSIENDARSRMQPDVIVRLPQGKDVVIDAKMTLVAYERYFNAEDDYTR
                     ESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELITE
                     ALKNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFIDDMSAI
                     GQSLDKAQDNYRQAMKKLSSGRGNVLAQAEAFRGLGVEIKREINPDLAEQAVSQDEEY
                     RLRSVPEQPNDEAYQRDDEYNQQSR"
     gene            complement(17936..18697)
                     /gene="udp"
                     /locus_tag="OQQ19_002121"
     CDS             complement(17936..18697)
                     /gene="udp"
                     /locus_tag="OQQ19_002121"
                     /EC_number="2.4.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine phosphorylase"
                     /protein_id="HCS1803748.1"
                     /translation="MSKSDVFHLGLTKNDLQGATLAIVPGDPDRVEKIAALMDKPVKL
                     ASHREFTTWRAELDGKPVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHI
                     NVGDVLVTTASVRLDGASLHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSD
                     TFYPGQERYDTYSGRVVRHFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAG
                     VIVNRTQQEIPNAETMKQTESQAVKIVVEAARRLL"
     gene            18959..19771
                     /locus_tag="OQQ19_002122"
     CDS             18959..19771
                     /locus_tag="OQQ19_002122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HCS1803749.1"
                     /translation="MATTQQSGFAPAASPLASTIVQTPDDAIVAGFTSIPSQGDNMPA
                     YHARPKQSDGPLPVVIVVQEIFGMHEHIRDICRRLALEGYLAIAPELYFREGDPNDFA
                     DIPTLLSGLVAKVPDSQVLADLDHVASWASRNGGDVHRLMITGFCWGGRITWLYAAHN
                     PQLKAAVAWYGKLTGDKSLNSPKQPVDIATDLNAPVLGLYGGQDNSIPQESVETMRQA
                     LRAANAKAEIIVYPDAGHAFNADYRPSYHAESAKDGWQRMLEWFKQYGGKRS"
     gene            20165..20825
                     /gene="hcp"
                     /locus_tag="OQQ19_002123"
                     /pseudo
     CDS             20165..20825
                     /gene="hcp"
                     /locus_tag="OQQ19_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001680647.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tube protein Hcp"
BASE COUNT         5109 a         5638 c         5249 g         4911 t
ORIGIN      
        1 cttttctctg ttgagattct caggagaacc ccgctgaccc ggcggcgtgt ttgccgttgt
       61 tccgtgtcag tggtggcgca ttatagggag ttattccggc ctgacaagag gaaatttaaa
      121 ataattttct gaccgcgcac tttttattct ttatgcttat ttcagcgtcg gtttgttggt
      181 taactgggcg atttctcggg cgaaattcgc cacctgctcc caatcggtat agacaacttc
      241 tttgcgcgta tccgtttcac cgcctgacat cttcataatc agcttaatca taaaacggtc
      301 gtaccagcga taacgtgggt aacgcagcgc cccggcaatg accgcgcagc gatcgggacg
      361 ccattgtgaa ctcatcagaa acttgcgcgc gtagctgttg gtctgtggag tacgcttctc
      421 cggtttgcgc gccaccaggt ttacggaata aaaggcgctc ggcatcgaat tcagtcgcgt
      481 cgcatgtttt ttgacaaatt cctggaacgc agagtggtag tgaccatagc gaatagaagc
      541 accaatgacc acacggtcat agttttccca ttgtggttct tcaatgcggt gcacattggc
      601 gacatccgtc tggatcccca gttctttcag ttccgaagcc aggtaggagg caatctcgcg
      661 cgtttgtccg tcccttgttg agaaaagaat taatgttttc acgtattact ccatcattca
      721 cgccagaaag tcggggtaaa gagcaccagc aatgtaaaga cctcgagacg accaaacagc
      781 atgttggcaa tcaggatcca tttagccacc gggttcatac tggtaaagtt atcagcaacc
      841 acgccaagcc ctggccccag gttattcaat gtcgcaacaa ctgaggcaaa ggcagaaaaa
      901 tcatccacgc ccgtggcgat aatcgccagc atactgacaa taaacaccaa tgcataggcg
      961 gagaaaaatc cccaaacggc ttcgaggata cgttccggca gtgcgcgatt ccccagctta
     1021 atgctataga cggcgttcgg atgcaccagt cgtttcagct cacggttccc ctgcttaaac
     1081 agcagcagga tgcggatcac tttcaggcca ccgcccgttg acccggcgca accgccgata
     1141 aaagctgaac ataaaagcag taccggcaaa aagagcggcc agcgggcaat gctgtcagtc
     1201 gtaaacccgg cggttgtcgc catcgatacc acctggaaaa acgcctggtt aattgtcatc
     1261 agcgccgaac tgtagacatt atgaaaccac agtacgagtg tacaaataac caccagcgta
     1321 aactgtacgc cgataaacat gcgaaattcc ggatcgcgcc aataaacctt cagactacgc
     1381 ccacttaaca gtgaaaagtg cagaccgtag ttacaaccgg agatcagcag gaagatagca
     1441 atgatagtgt taatagtcgg actgtcgaaa taaccgatac tggcatcatg tgtcgagaag
     1501 ccgccaatag cgatagtcgc aaagctatgg ccgatggcat caaaggcatc cattccggca
     1561 aaccacaacg ccagcgcaca ggcgacggtc agcaagacat aaatcaacca cagggttttc
     1621 gccgtttccg caattcgcgg gcgcattttg ttatctttca gcgggccggg catttctgcg
     1681 cgatagagct gcatcccacc cacgccgagg ataggcagta tcgcaaccgc taacacgatg
     1741 atccccatcc cgccaaacca ttgcagcatc tggcgataaa agaggatggc atgagggagc
     1801 gaatccagcc ccaccagcgt agtggccccg gtggtggtca ggccagagaa agattcaaaa
     1861 aacgcatcgg taatcgtgag gttcgggctt tccgagaaga taaaagggag cgcaccgaca
     1921 ctacccagca cggtccaaaa cagcaccact atcagaaacc cctcacggga tttcagttcg
     1981 cccttctctt tgcggttcgg ccaccacagc atagagccaa tggcgagggc gacaaaaaag
     2041 gtctgggtaa aagcgcggcc cgctccatcc cggtagatga gtgctaccag cccagggata
     2101 atcatggtcc ctgaaaataa gatgaccagt agtccaacga ttcgggtaat ggcgcgaaaa
     2161 tgcatctctg ccgcttcctt agttctgcaa aatgaagtgg ggattattct tcaatcgcta
     2221 acaattgcaa tgaaccacgg ctaaaatccg ccagctttgc ggaaaattca gccactttcg
     2281 ccgccggaag cgccacccgc agcagaacga atgcctgata atcactgttg ataattttgc
     2341 cgtcacactg ccccagcaac gcttcaatgc cggttaactg actatattca cattgcaaag
     2401 tatattcggt taatggcgtc ttgcgttggg tcgttagctg gcgcagcgcc tgattcacgc
     2461 cgccgccata cgctttcact aacccaccgg tgccaagcaa tatgccgccg tagtagcgca
     2521 ctaccacagc ggtaatttcc ccgatgccgc tgcccattag ctgggcgagc atcggtttac
     2581 ctgccgttcc cgccggctcc ccgtcgtcag agaaacccag ctgttgagaa tcatccggcg
     2641 cacccgccac ccacgccacg caatggtggc gggcatcggg gtgttctgcc cgcaccgatt
     2701 caacaaacgc tttcgccgcc tcaacgccat cggtatgcgc caacatcgtt atgaagcggc
     2761 tctttttgat ctcttcaacg accgtgaccg gtgccgcagg aattaaccag ctttccatca
     2821 cgccagtttc agatcccggg tcatgttttc cacgttattt tcgtggatca ccacgttgtc
     2881 ttcgatacga atgccgctga acggtttcag tgcttcaatt ttctgccagt tgaagtgctt
     2941 gctgaactgc ccttcacgcc acggtgccag tagcgattcg atgaagtaga tacccggttc
     3001 gatggttaac accatgcccg gctggagaat acgggtgcag cgcaggtacg gatattttgc
     3061 cggtgccgcg aggtgtgtac cgctatcatc ctgcataaaa ccggctacgt catgcacctg
     3121 caggcccagc ggatggccga taccgtgcgg cataaacggt ccggtgagat cgttttcgac
     3181 catcgcttct tcactcatat cggtgatgat ttgatgttta cgcagcaatt tggcgatgcg
     3241 ctgatggaac tggaggtggt aatccacata gctgacgcca gctttcatgg tagcgatcag
     3301 cgcaagttgt tcatcattta cgtctttcac cagctgtgcg tagtcgttgt cgctttttgc
     3361 cgaccaggta cgagtcaggt cagccgcata gccgttatat tcggccccgg catccagcag
     3421 gaagctgcgc atctcttccg gtgcctgatg atccagtttg gtgtaatgca gcaccgaagc
     3481 gtgttcgtta agcgccacaa tgttgctgta aggtacgtcg gtatcacgat gaccggtcgc
     3541 ggtcagatag gcgatgttga tatcgaactc gctcatgcca gaacggaacg cttcttctgc
     3601 cgcacgatga ccgttgaccg ccattttctg cgcttcacgc atacaggcca gttcgtactc
     3661 ggttttgaag gagcggtagt aatgcaggta gtcgatcacc cctttcgggt tgatgttgct
     3721 ggcctcaata cccagttgca gcgcacgttc cggcaccgga ccgatataac cgatattgcc
     3781 gcgcgcagcg ggcagcaggc taccaatgcc atcggctttc ggcagtgcga tcacttccac
     3841 atcttcagtc cagaaggagg tcggcagcgg ttcgacgttg tgccagtaat caaccggcag
     3901 atagaaccac agtttcggct tgttcacgcc atccaccagc aaccagcagt ttggcacctg
     3961 agttaccggc acccacgctt tgaattgcgg gttcacttta aacggatagg gatgatcgtc
     4021 gagaaaaacg ttgaacagct cgccggagtg aataagtaat gcatccagct tgaagcgcgc
     4081 cagcgcatcg cgagtccgtt cttgtaaggt agctatatga tttttataga gcgaggccag
     4141 tgattccatt ttttaccctt ctgttttttt gaccttaagt ctccgcatct tagcacatcg
     4201 ttcatccaga gcgtgatttc tgccgagcgt gatcagatcg gcatttcttt aatcttttat
     4261 ttacatgttt ttaacacaaa atacacactt cgatgcatct ggtacgacca gatcaccttg
     4321 cggattcagg agactgacat gctttacaaa ggcgacaccc tgtaccttga ctggctggaa
     4381 gatggcattg ccgaactggt atttgatgcc ccaggttcag ttaataaact cgacactgcg
     4441 accgtcgcca gcctcggcga ggccatcggc gtgctggaac agcaatcaga tctaaaaggg
     4501 ctgctgctgc gttcgaacaa agcagccttt atcgtcggtg ctgatatcac cgaatttttg
     4561 tccctgttcc tcgttcctcg ttcctgaaga acagttaagt cagtggctgc actttgccaa
     4621 tagcgtgttt aatcgcttgg aagatctgcc ggtgccgacc attgctgccg tcaacggcta
     4681 tgcgctgggt ggtggctgcg aatgcgtgct ggcgaccgat tatcgtctgg cgacgccgga
     4741 tctgcgcatc ggtctgccgg aaaccaaact gggcatcatg ccgggctttg gcggttctgt
     4801 acgtatgcca cgtatgctgg gcgctgacag tgcgctggaa atcattgccg ccggtaaaga
     4861 tgtcggcgcg gatcaggcgc tgaaaatcgg tctggtggat ggcgtagtca aagcagaaaa
     4921 actggttgaa ggcgcaaagg cggttttacg ccaggccatt aacggcgacc tcgactggaa
     4981 agcaaaacgt cagccgaagc tggaaccact aaaactgagc aagattgaag ccaccatgag
     5041 cttcactatc gctaaaggga tggtcgcaca aacggcgggg aaacattatc cggcgcccat
     5101 caccgcagta aaaaccattg aagctgcggc ccgttttggt cgtgaagaag cattaaatct
     5161 ggaaaacaaa agctttgtcc cgctggcgca caccaacgaa gcccgcgcac tggtcggcat
     5221 tttccttaac gatcaatatg taaaaggcaa agcgaagaaa ctcaccaaag acgttgaaac
     5281 accgaaacag gccgctgtac tgggcgcagg catcatgggt ggcggcattg cttaccagtc
     5341 tgcgtggaaa ggcgtaccgg ttgtcatgaa agatatcaac gacaagtcgt taaccctcgg
     5401 catgaccgaa gccgcgaaac tgctgaacaa gcagcttgaa cgcggcaaga tcgatggtct
     5461 gaaactggct ggcgtgatct ccacgatcca cccaacgctc gactacgccg ggtttgaccg
     5521 cgtggatgtt gtggtagaag cggttgtcga aaacccgaaa gtgaaaaaag ccgtactggc
     5581 agaaaccgaa caaaaagtac gcccggatac cgtactggcg tctaacactt caaccattcc
     5641 tatcagcgaa ctggccaacg cgctggaacg cccggaaaac ttctgcggaa tgcacttttt
     5701 taacccggta caccggatgc cgttggtaga aattattcgc ggcgagaaaa gctccgacga
     5761 aaccatcgcg aaagttgtcg cctgggcgag caagatgggc aagacgccga ttgcggttaa
     5821 cgactgcccc ggcttctttg ttaaccgcgt gctgttcccg tatttcgccg gtttcagcca
     5881 gctgctgcgc gacggcgcgg atttccgcaa gatcgacaaa gtgatggaaa aacagtttgg
     5941 ctggcctatg ggtccggcat atctgctgga tgtcgtgggc attgataccg cgcatcacgc
     6001 tcaggctgtc atggcagcag gcttcccgca gcggatgcag aaagattacc gcgatgccat
     6061 cgacgcgctg tttgatgcca accgctttgg tcagaagaac ggcctcggtt tctggcgtta
     6121 taaagaagac agcaaaggta agccgaagaa agaagaagac gccgccgttg aagacctgct
     6181 ggcagaagtg agccagccga agcgcgattt cagcgaagaa gagattatcg cccgcatgat
     6241 gatcccgatg gtcaacgaag tggtccgctg tctggaagag ggcattatcg ccactccggc
     6301 ggaagcggat atggcgctgg tctacggcct gggcttccct ccgttccacg gcggcgcgtt
     6361 ccgctggctg gacaccctcg gtagcgcaaa atacctcgat atggcacagc aatatcagca
     6421 cctcggcccg ctgtatgaag tgccggaagg tctgcgtaat aaagcgcgtc ataacgaacc
     6481 gtactatcct ccggttgagc cagcccgtcc ggttggcgac ctgaaaacgg cttaaggagt
     6541 cacaatggaa caggttgtca ttgtcgatgc aattcgcacc ccgatgggcc gttcgaaggg
     6601 cggtgctttt cgtaacgtgc gtgcagaaga tctctccgct catttaatgc gtagcctgct
     6661 ggcgcgtaac ccggcgctgg aagcggcggc cctcgacgat atttactggg gttgtgtgca
     6721 gcagacgctg gagcagggtt ttaatatcgc ccgtaacgcg gcgctgctgg cagaagtgcc
     6781 gcactctgtc ccggcggtta ccgtcaatcg cttgtgtggt tcatccatgc aggcactgca
     6841 tgacgcagca cgaatgatca tgactggcga tgcgcaggca tgtctggttg gcggcgtgga
     6901 gcatatgggc catgtgccaa tgagtcacgg cgtcgatttt caccccggcc tgagccgcaa
     6961 tgtcgccaaa gcggcgggca tgatgggctt aacggcagaa atgctggcgc gtatgcacgg
     7021 tatcagccgt gaaatgcagg atgcctttgc cgcgcggtca cacgcccgcg cctgggccgc
     7081 cacgcagtcg ggcgcattta aaaatgaaat catcccgacc ggtggtcacg atgccgacgg
     7141 cgtcctgaag cagtttaatt acgacgaggt gattcgaccg gaaaccaccg tggaagccct
     7201 cgccacgctg cgtccggcgt ttgatccagt aaacggtacg gtaacggcgg gcacatcttc
     7261 tgcactttcc gatggcgcag ctgccatgct ggtgatgagt gaaagccgcg cccatgaatt
     7321 aggtcttaag ccgcgcgctc gtgtgcgttc gatggcggtc gttggttgta acccatcgat
     7381 tatgggttac ggcccggttc cggcctcgaa gctggcgctg aaaaaagcgg ggctttctgc
     7441 cagcgatatc ggcgtgtttg agatgaacga agcctttgcc gcgcagatcc tgccgtgcat
     7501 taaagatctc gggctaatgg agcagattga cgagaagatc aacctcaatg gtggtgcgat
     7561 cgcgctgggt catccgctgg gctgttccgg tgcgcgtatc agcaccacgc tgctgaatct
     7621 gatggaacgc aaagacgttc agtttggtct ggcgacgatg tgtatcggtc tgggtcaggg
     7681 tattgcgacg gtgtttgagc gggtttaacc acttgccgga tgcggcgtga acgccttatc
     7741 cggtctaccg atcctgcacc aatgtaggcc tgataagacg cgccagcgtc gcatcaggca
     7801 tcgtgcaccg attgccggat gcgacataga tctaaatgcc actgaataaa gttttagttg
     7861 ccgttcttcc cgcctgtcag gggcgggttt ttttatatct cagataaatg caaacgcatc
     7921 gccaaacaga cgatcttccc gcgcattacg ctcactgcaa aacaggtcac gagcaatttt
     7981 cgccatctca aaacgtccgg caatatagat atcatgctct gccagcgtac catgatcctg
     8041 caagaccgcc gttaacacgg tgccagtacg cccacgccag cccgcttccg gttgttcaac
     8101 caccggcacc acacgcaggc caggatgctt cagcgaaagc gcctcaagct cggagagatc
     8161 ataaagatgt tgctcctcac gcccacccca gtaaatggtg atatcgcgat tgggattacg
     8221 cgccaacgcc gtcaataaaa tcgagcgcgc ataggagaac ccggtgccgc ccgcaatcaa
     8281 aatcatcgga cgctcttcat catcgcgcag ccacgcttct ccgtagggaa tatcgaccac
     8341 gatttgataa tctttgagga tgcggtccat gactgctttc gcgtaaaggt tgatttcaga
     8401 agcgccaata tgcagctcta taaacccttt ttcatccggc gtcgaagcca ttgaaaacgg
     8461 acgtttgtcg cgctcatcca tcactaccat caaatactga ccagcacgaa aagaaaaggc
     8521 cgcgtctggc acgatgcgga cacgatatac ggtatccgtg atagcttcta ccgaggtcac
     8581 tttacagctt aaggttgtca tgcgctttct ctgtcggatc gataaatagg gcaaaacaaa
     8641 cgcgcatcag gcgcttttac cgttgttaaa aatagccagt tcatcccaga tggcgtcaat
     8701 atgcgcgaca acatctggat cttttttgat gggacgtccc cattcacgct gggtttcccc
     8761 cggccattta ttcgtggcat ccagccccat ttttgaaccc agcccggaga caggcgaggc
     8821 aaaatccaga taatcaatag gcgtattttc taccagaaca gtatcccgcg ccgggtccat
     8881 acgggtggta atcgcccaaa tcacatcgtt ccagtcgcgt gcgttgacgt catcatcgca
     8941 aacgatcaca aatttagtgt acataaactg gcgtaagaac gaccagacgc ccatcatgac
     9001 gcgcttcgcg tgtccggcgt actgtttttt gatcgtcact accgccagac gataagaaca
     9061 gccttccggc ggcaggtaaa aatcgacaat ttccgggaac tgtttttgca gaatcggtac
     9121 aaacacttcg ttcaacgcca cgcccagtac cgcgggctca tctggcggac gcccggtata
     9181 ggtggaatgg taaatcgcat cttcacgctg ggtaatatgc gtcacggtaa ataccgggaa
     9241 actatcgact tcgttatagt aaccggtgtg gtcgccatac ggcccttccg gcgcagtttc
     9301 gccttgttcg atataccctt ccagcacaat ctccgcactg gcgggcactt caaggtcatt
     9361 ggagatacac ttcaccactt cggtcttggt accgcgcagc aatccggcaa acgcatactc
     9421 tgaaagtgta tccggaacgg gggtgactgc accgagaatc gtggcgggat cggcacccag
     9481 cgccacagaa accgggaaac gttcgcccgg atgcgccgca caccactcct gataatccag
     9541 cgcgccgccg cgatgcgaca gccagcgcat aatcagtttg tttttaccaa tcagctgctg
     9601 gcgataaatg cccagattct gccgctcttt atgcgggccg cgcgtcactg tcagccccca
     9661 ggtaatcagc ggtgcggcat cttccggcca gcaggtcata atgggaatgc gattgagatc
     9721 gacgtcatcg ccagagacga ttttttgttg gcagggcaca ccacgcagcc gctttgtcgg
     9781 catgttcaat acttgcttaa actgcggcag tttatcaaac aggtcgcgga aaccttttgg
     9841 cggctccggc tctttcagaa acgccaataa tttaccaact tcacgcagcg ccgaaacatc
     9901 ttcctgtccc atgcccatcg ccacgcgctt tggcgtaccg aacaggttgc acagcaccgg
     9961 cattgagtag cctttagggt tttcgaacaa cagcgcaggc ccaccggcac gcaaagtgcg
    10021 gtcagcaatt tcagtgattt ccagatgcgg atccaccggg agcgtgatac gttttagctc
    10081 accctgctgt tcaagcagcg tcaagaagtc gcgtaaatcg ttatatttca tggcgtccat
    10141 tgtagcctct taatctacgc ccattatacg gcgttcatct ttgcgatgct gtaaatttgt
    10201 taaattagcg tgaactctga cggtataacg caaaccgggg aatataatta acttagcgta
    10261 aagcttttgc tatccttgcg ccccgattaa acggataaga gtcattatgc aatcctggta
    10321 tttactgtac tgcaagcgcg ggcaacttca acgtgcccag gaacacctcg aaagacaggc
    10381 tgtgaattgc ctggcaccga tgatcaccct ggaaaaaatc gtgcgtggaa aacgtactgc
    10441 agtcagtgag ccattgtttc ccaactacct gtttgtcgaa tttgatccag aagtgattca
    10501 taccacgact atcaacgcga cccgcggtgt cagccacttc gtgcgctttg gcgcgtcgcc
    10561 agcgatagtc ccatcggcgg tgattcatca gctatcggta tataaaccga aagacattgt
    10621 cgatccggca acaccttatc cgggtgataa ggtgattatt accgaaggcg cgttcgaagg
    10681 ctttcaggcc attttcaccg aacccgatgg tgaggctcgt tccatgctat tgcttaatct
    10741 tattaataaa gagattaagc acagtgtgaa gaacaccgag ttccgcaaac tctaaaacgc
    10801 aatcccaaac agtgttttga cattggcatc cgtggtggca gccagccatg cggcatcttc
    10861 tccacgccag tgcgcaatac gttgcaaaat atggtgcaga tgggctggct cgttgcgccg
    10921 ggatgatggc tttggcgtga aatcgcgcgg gagcagatac ggcgcatcag tttcgatcag
    10981 caatttctcc gccggaatca acggtaacaa ttcccgcagc tccagcccgc gtcgttcatc
    11041 gcaaacccaa ccggtaatgc cgatataaat tccacgcgcc acgcacgcct gcatctcttc
    11101 gcgtgtgccg gtaaagcaat gaagaaccgc accaggcagt ttatccagcc acggctccag
    11161 caatgtcata aaccgctcgt gggcatcgcg acagtgcata aataccggca tgtttaattc
    11221 tgcggcaatg cgtagctgag caacaaaagc gcgttcctgc tcttccggcg tcgaaaagtt
    11281 gcggttaaag tcgagaccac attcaccaat cgccaccact tctggctgca cggccagctc
    11341 aataatcgct tcttcagtcg cagcttgcca ctggctgctg tcgtgaggat gtacgcccgc
    11401 cgttgaccaa caggacgaat actgacgcgc cagcttttgc gcctgctggc tttcacgcag
    11461 gttagtgccg gtgatgagta gcccattaac tcccgcgtca aaagcgcgcg ctacaacatc
    11521 atcacggtct ttcgcaaatt gcgaactggt caaattaacg ccgatatcaa acatcctgta
    11581 ctccatatga caaccgccct gacgggcggt tgaatttatt cttcagtttt ttcgctttct
    11641 gcttcagcgt cgttttcctc ttcccgattt cgccctttac caacgtaaaa gcgtgagaag
    11701 aagacaccga tttcaaacag acagtacatc gggatcgcca atagcgtttg cgagaagaca
    11761 tccggcggcg tcagcaacat cccgacaacg aatgcaccaa ccagcacata cgggcgtttt
    11821 ttgcgtaagt cttctggcga ggtaatcccc atccagcaca gcagcacaat tgccaccggc
    11881 acttcaaagg agacaccaaa cgccataaac agcgccataa cgaagcttaa atagctggcg
    11941 atgtcggtgg atacctgcac cccttccggc gcggtattgg caaggaagcc aaatgccagc
    12001 ggaaagacca caaagtaggc gaatgccatg ccgatataaa acagcagaga gctggaaacc
    12061 agcagcggca ccaccaggcg acgttcatgc ttatacagcg ctggggcgat aaatgcccac
    12121 acctgataga gaatcaccgg cgctgacaga atcagcgaca ccataaaggt cagcttgatc
    12181 ggcgtaaaga acggcgaggc cacgtcggtg gcgatcatcg ttgaaccttg cggcaactgc
    12241 ttgatcaatg gcgcggatac caggtgatag atgtcattgg cgaaatagac cagacacagg
    12301 aatatcacga tcaccgcgat aatgcagttc agcagacgct tacgcagctc aattagatgc
    12361 gtgataagcg gttgagtatc ttctacagac atgtttacgg tttatcactc gacgaagggg
    12421 aaggtgcagc ggttttcggt tcagcgtccg cagcaggttt taccaccggc tctggcgtgg
    12481 tttctggctt ctgttccggc gaactggcct gcgtttgtgc agcggcaggc gttacgccct
    12541 catgcgcagc ttcattatct ttcaccaccg ggttatggat ggtgtgcgct tcatcgctcg
    12601 ccttttctgg atcgtttgca acgtaggaac gcttcatcga ctccgcggcc tggcgtagtt
    12661 catccatcga cgctttcagt tcgggcgtca ggttagtgag gctcgccttt tcaacctttt
    12721 tcagactgtc ctgaaactcc tggagtttta actcctggat cagttcgttc tgcaccgttg
    12781 tcgccagtga acgcaacgcg cgaatccagc ccgctaccgt ttttaccgcc acaggcagtc
    12841 gttgcggccc cagaacgacg aggccgatga tgaacaccaa tagcagttcg ctaaaaccga
    12901 tatcaaacac ggattacacc tgctctttat cgtggcgctt cgcgtcttct gttttagcct
    12961 gttcctgatt cgtatccgcc tgcttatcgg cgatagtttt cgcagtaaaa tcagcatcct
    13021 gactggtttt atcctgcttt ggttcatcat cgctcattgc ttttttaaag cctttgatcg
    13081 acgcaccaag atcggaaccg atggagccga gctttttggt gccaaaaagc agtacaacga
    13141 tgacggcaat aatcaataac tgccaaatac tgataccacc catacatgtt cctctgtggt
    13201 agatgatgat taaacaaagc cgcattatac gttacacggc ccgccttgag cgatgaaaaa
    13261 atcagcgtgt tttgcgccaa ccgacaaacc aggcgatcag accacctgcc attaaccagc
    13321 cgggcatcag cccccactca ggtcggctga ccaacaagaa tgtgccactt aatactaacg
    13381 tagcgccaat tccgagaaaa taacgcgatt gtccctgacg tacatgattt gactgaagct
    13441 cgcgggcaat cttatcaaca ctgtgctgta aatacttgcc ctggcgcaaa ctgtcgtaaa
    13501 ccaattcagg cagttctggc attttttcga cccagaacgg cgctttttct ttaaatgctc
    13561 tcaccagcgc aggaataccg acctgatctt taatccacga ctccaggaaa ggcttcgctg
    13621 ttttccataa atcgagctgc ggataaagct ggcgtcctac cccttcgaca tagagcaggg
    13681 ttttctggag taacaccagt tgcggctgca cttccatatt gaagcgacgc gccgtattaa
    13741 acagatttaa cagtacatgt ccaaacgaaa tttcggccag cggtttctca aagataggtt
    13801 cacagaccgt acgaatggca aattcgaact cttcaacgtt ggtatctggt ggcacccagc
    13861 ctgaatcgac gtgtagctct gccactttgc gatagtcgcg attaaagaag gcgataaagt
    13921 tttctgccag atagcgttta tcttctttgt ttagcgagcc aacaatcccg caatcaatgc
    13981 cgatatattt cgggttttcc gggtgttcat agcttacgaa gatgttgcca gggtgcatat
    14041 cggcatggaa aaagctgtcg cgaaagacct gagtgaagaa cacctgcacg ccgcgttccg
    14101 ccagcaattt catgttagtg ccgtttttct ccagcgccgc aacatcagac accggaatgc
    14161 cgtaaatgcg ctccatcacc atcatccctt cactacaata gtcagggtaa acttccggga
    14221 tgtagagcat cgggctgtct tcaaaattgc gccgaagctg aatggcgttg gcagattccc
    14281 gcagcaaatt cagttcatca atcaaggtct tttcgtactc gcgcaccact tcggttgggc
    14341 gcagacggcg accatccggc agcaaacgcg gcacccagcg agccagacgg tagataagtt
    14401 tcagatccgc tttaatgacc ggcaaaatat ccgggcggat gactttaatc accacctctt
    14461 taccattcga tttcaatcgc gcggtatgaa cctgggcgat agaagcagaa gccagcggct
    14521 tgatttcaaa atcgtcaaac cacgcttcta ccggcaagcc gcccattgca gcttcaatct
    14581 gctgcttcgc cagcttgcca tcaaacggag ctactttgtc ctgcaataac gccagctgat
    14641 cggcaatatg cggtggaaaa agatcgcggc gggttgataa catttgcccg aacttgatcc
    14701 aaaccggccc cagttcttgc agggccagtc gtagtcgctc acctaaaagt ttgtctttat
    14761 gccgatttgg catccagaat aatgagtatc gccatagccg tagcggcagg gtgatacgca
    14821 ttttggggat cagttcatca agtccgtagc ttaaaaaagt gcgaatgatg aaatataggc
    14881 gccgtacttc acctggcgtc atttagcctc cagtttttcc agccgtttgg tcagggcatc
    14941 aacagcacgc tcgacggcag ccgtctcttc cgcaaaccag gccacttcaa gcggaccggg
    15001 tgccatacgc cactcttcag taatggcttc cgccacataa cgttgctggc gcttaatgcc
    15061 gtgatgcagg aactttgcgc ctccgcgcat ggctttgctg attccttcag cggcgatatc
    15121 accggtataa ggggccagca gttccgcagg gtcgaactct gccagatctg ccagcgcaac
    15181 gaagttttgc accacctgaa tatcgccctg cacttccagc tcaccactgc gaatcagtgc
    15241 ggtaagctgc tggcgatcgc gaagtttcgg caacacactg gcgtaggcga taacggtgca
    15301 gtcagcatcg cctgcccatt cgcccagtac atcaacctgg cgttcgctga acaccagaat
    15361 caatgacgtc gaaaagcctt ttacctccac gcgcaatact ttacccagca gacgcgagcg
    15421 ggctgttttc agcgcgggtg agcgatacag gaaggtgttg agcagacttt caattcctgc
    15481 cgtcactaaa ggtttaaaag gcatttccgg tctcctgtca gaacttataa ccacgatgca
    15541 gcgccacaac ccctgccgtc agattgtagt agtcgacact ttcgaatccg gcatcctgca
    15601 tcatggcttt cagggtatcc tgatcgggat gcatacggat ggattctgcc agataacggt
    15661 agctgtcggc gtcgttcgcg accagtgagc caatacgcgg cagcacatgg aaggagtatg
    15721 catcataggc tttgctcagc ggctcgataa ttggcttcga gaactcaagc accagcaggc
    15781 ggccgccggg tttcagcacg cgatacattg aacgcagtgc tttatctttg tcggtgacgt
    15841 tacgcagacc aaacgaaatg gtgatgcaat caaaggtgtt atccgggaac ggcagcgcct
    15901 cagcgttcgc ctgaacatac tcaacgttgc caatcacacc gatattacgc agcttctcgc
    15961 gtcccatttt gagcatggat tcattgatat cagcaaggac cactttgcca gtttctccga
    16021 ccaggcggga gaatttcgct gtcaggtcgc cggtgccacc agccagatcc agcacggtct
    16081 gcccacggcg tacgccgctg caatcaatcg tgaatcgctt ccacaaacga tgaataccaa
    16141 atgacatcaa atcattcatg acatcgtatt ttgatgccac ggaatggaaa acgtgggcga
    16201 ccatatccgc tttttgttcc ttcgcgacgg tctgaaaacc aaagtgcgtc gtttcttgtg
    16261 acttatccac catctcaatg cctgctcatc aaaaaattgt tccagaagtg taacagattg
    16321 ggcgtcgatg ccctagattt ctacccggct taactacccc taatgggcta gcgcgactgc
    16381 tgattatatt catcatcgcg ttgataagct tcatcattcg gctgctccgg aaccgaccga
    16441 agtcgatact cttcatcctg gctcaccgcc tgttcagcca aatccggatt aatctcgcgt
    16501 ttaatttcta ctcctaaacc gcgaaacgct tctgcctgcg ccagcacatt tccgcgacct
    16561 gaagagagtt ttttcattgc ctggcggtag ttatcctgcg ctttgtcgag actttgacca
    16621 atcgcggaca tgtcatcgat gaacaaacgc atcttgtcgt acagcttgct ggcacgatcg
    16681 gcgatttgct gggcgttgcg gctttgatgc tcataacgcc acaggttggc aatagtacgc
    16741 aacgccacca gcagcgtagt cgggctaacc agcatgatat tgtttttcaa cgcttcggtg
    16801 atcagctccg gctggcggtc aagcgccagt aaaaaagcgg gttcaacggg aataaacatc
    16861 agcacgtaat ccagagttcg cagccccggc agctgttgat aatctttgcg tcccagcaaa
    16921 cggatatggt tacgcaccga cgcgatatgt tcctgtagcg cgctttcgcg ggtgtagtcg
    16981 tcttcggcgt taaaatagcg ttcataggcg accagcgtca ttttggcgtc gatcaccaca
    17041 tcttttccct gcggcagccg cacgatgaca tccggctgca tccgcgagcg ggcgtcattt
    17101 tcgatgctga cctgggtttc atattcatac ccttcacgca gaccggaagc ctccagcacc
    17161 cgcgtcaata ctacctcgcc ccagttgccc tgggttttat tgtcgccttt cagcgcgcgc
    17221 gtcaggttaa tcgcttcctg ggccatttgc gcgttgagtt gctggagatt gcgaatttcg
    17281 tgggtcaggg tatggcgttc ttgtgcttct ttaccgaagc tgtcctgaac ctgacggcgg
    17341 aaaccgtcca gttgttcacg tagcggcgac aacaggctgt tcagactctg acggttttgc
    17401 tcatcaaccc ggcgattgct gtgctcaaaa atacggttgg cgaggttttc aaactgctca
    17461 ctgaggcgct gctcgctgtt aatcatctgg cgaattttat cgtcagcatg ttgctgtgcg
    17521 gcttccatcc gcgtggttac ttcacgcaga tcggcctcca gagaggtgtt aatactttgc
    17581 aggctgcgca cttcgttatt gagtaactcg cactctgcac gccagtgctc gctttgggta
    17641 atttgttgtt ttgccgcgct taactccgcg accatctctt cacgttcagc taattgctcg
    17701 gctttttgct gcgcatgttg ataactggca aacagccagc caattgccac acccaccaac
    17761 gcaataactg cgtaaaccat gattgagaaa tccacaacgc ctcctgacgc aacaacttac
    17821 ccgcacaaaa tagaattgtg ctgtacaaac gtccagttgg aaaggcattt cctgcgaggc
    17881 gctacgcaaa aatacaaaag gccgaacgcg tcggccttca gacaggagaa gagaattaca
    17941 gcagacgacg cgccgcttcc accacgattt tcaccgcttg gctttcagtt tgtttcatcg
    18001 tctcagcatt cgggatctct tgctgggtgc ggttaacgat aacacccgct accataccgg
    18061 cacgcaggcc ctgacttgca cacatggtca gcagggttgc agattccatt tcatagttca
    18121 ttacgcccat cgcctgccac tcttccatag aacctttaaa gtgacgaact acgcgaccag
    18181 agtaagtatc gtaacgttcc tggcctgggt agaaggtatc agaagaagct gtcacgccaa
    18241 cgtgagttgt cgcgccaatg gatttcgcag cttcaaccag cgcagtcgta cattcgaaat
    18301 cagcgacagc cgggaattcc agcggtgcga agtgcaggct cgcgccatcc agacggacag
    18361 acgccgtggt aaccaggaca tcacccacat taatatgcgg ctgaatagcg cccgttgtac
    18421 cgatacgcag gaaggtgcga atgcccagct gtgccagctc ttcaacagca atagaggtag
    18481 acgggccgcc gataccggta gagcagacga taacaggttt accatccagc tctgcacgcc
    18541 aggtggtgaa ttcgcggtga gatgccagct taaccggctt atccatcagc gcggcgatct
    18601 tttccacacg atccgggtcg ccagggacga tggcaagcgt agccccttgt aaatcgtttt
    18661 tagtgaggcc gagatgaaaa acatcagact tggacatata caactcctct gtgaatcggt
    18721 ttagtcagaa gaagcaaaaa gacactttac cgaagggttt aacatttttt cgtgatactc
    18781 atcaccatga cgcaaatgcg ttgcataaat ttacccacca aaagtgatgc aaatcacata
    18841 aatcactctt cattctgcag gactgcataa aagatgagcc gattcaggca atgtgatttg
    18901 ttgcatgctg actatagtta acattgcgca acatttttat aagggtacgg agaataccat
    18961 ggcaacaaca caacaatctg gatttgcacc tgctgcatcg cctctcgctt cgaccatcgt
    19021 tcagaccccg gacgacgcga ttgtggcggg cttcacctct atcccttcac aaggggataa
    19081 catgcctgct taccatgcca gaccaaagca aagcgatggc ccactgccag tggtcattgt
    19141 agtgcaggaa atttttggca tgcatgaaca tatccgcgac atttgtcgcc gtctggcgct
    19201 ggaggggtat ctggctatcg cacctgaact ttacttccgc gaaggcgatc cgaatgattt
    19261 tgccgatatc cccacgttgc ttagcggtct ggtagcaaaa gtgcctgact cgcaggtgct
    19321 ggccgatctc gatcatgtcg ccagttgggc ttcccgcaac ggcggcgatg ttcatcgttt
    19381 aatgatcacc ggattctgct ggggtggacg tatcacctgg ctgtatgccg cgcataatcc
    19441 acagctaaaa gctgcagtgg cgtggtacgg caaactgacg ggcgacaagt cgctaaattc
    19501 accgaaacaa cctgttgata tcgcaaccga tcttaacgcg ccggttctcg gcttatatgg
    19561 tggtcaggat aacagcattc cgcaggagag cgttgaaacc atgcgccagg cgctgcgggc
    19621 tgctaatgcg aaagcagaga ttatcgtgta cccggacgcc gggcatgcat tcaacgctga
    19681 ttatcgcccg agctatcatg ccgaatctgc gaaagatggc tggcagcgta tgctggaatg
    19741 gtttaagcag tatggtggga agcggagtta gtttcctctt agtctatatt tgagatggtg
    19801 agtgaacgag tgcgttttgc tgccatctct gtcccccaaa aaataatcag tatgaattga
    19861 ttggagatta cgactccgct atttgacctt aagaaggtcg gcaagtcata gtcataaatg
    19921 agtctcttca atggaagaca ccttagagat ttaccatcta ctcccattca caaacaaaca
    19981 ttaattatta tcaacacatt cacattaatt ataaatcatc tcagaccttc ctgataaaaa
    20041 gatattaaag tgaaacattt tgtttttcac attttagttc atcactttta ggcgtaaata
    20101 aaggtaaaaa aaacaacaat actatttctc tttcacaaaa gaattaacaa aaggtttttt
    20161 aaggatgagt gatattattt acttgaccat aaccggagaa caacaaggat gtatttcctc
    20221 tctttgtgga acgagcgcat caataggtaa tcgctggcag attggccatg aagatgaaat
    20281 cttcgcgttc tcgctctcta atagtattac gaatgcaggc aaagggtcac aattgcatgg
    20341 ccttagtttc tgtaaattct tattaacgct attaacaata acgagcagtt gttcatggcg
    20401 tttgacttct atcggatcaa tagatttggt cgatgggaga aatattacaa cattcaactc
    20461 cgcggcgcgc tcttatcagc aatcaatcac ctgtttactg agaacaatct ggatacagaa
    20521 gccatcactg tcagttatga atatatactc tccaggcatc tgattgctaa tactgaattt
    20581 agttatttgg catttcccga taactacaac cgtctgttta taccacggcc aaaaactaaa
    20641 gctggtaatg gttcaaaaca cttaatagta aagcggttgg cagactgctt gctgctggcg
    20701 gcatatacaa tgggaatatc gaaggattca gggaaacagc agacaagttg gggggagatg
    20761 cacctgctgg ttacgatcaa tttatggata acaaagggtt actcatcgct ggtgcttcaa
    20821 tagttgctgg agcagttctg gggagaatga gactccctga tttggaatca cttgagcatt
    20881 tcggagccag aggagcagta tcaggaa
//
LOCUS       DAJVSY010000064        20734 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.064, whole genome shotgun sequence.
ACCESSION   DAJVSY010000064 DAJVSY010000000
VERSION     DAJVSY010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20734)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20734)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20734
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.064"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..260)
                     /locus_tag="OQQ19_002124"
     CDS             complement(<1..260)
                     /locus_tag="OQQ19_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803750.1"
                     /translation="MNRFVVAEPLWCTGCNTCLAACSDVHKTQGLQQHPRLALAKTST
                     ITAPVVCHHCEEAPCLQVCPVNAISQRDDAILRCTGNSGHYH"
     gene            complement(513..983)
                     /gene="bcp"
                     /locus_tag="OQQ19_002125"
     CDS             complement(513..983)
                     /gene="bcp"
                     /locus_tag="OQQ19_002125"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HCS1803751.1"
                     /translation="MNPLKAGDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTP
                     GCTVQACGLRDNMDELKKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCEQ
                     FGVWGEKSFMGKTYDGIHRISFLIDADGKIEHVFDDFKTSNHHDVVLNWLKEHA"
     gene            complement(983..1555)
                     /locus_tag="OQQ19_002126"
     CDS             complement(983..1555)
                     /locus_tag="OQQ19_002126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system transcriptional
                     repressor"
                     /protein_id="HCS1803752.1"
                     /translation="MTLSSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML
                     GEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRTTARPRPPMPASVWVQVDV
                     ADSPHLIERFTALFDAHHMNIAELVSRTQPAENERAAQLHIQITAHSPASADAANIEQ
                     AFKALCTELNAQGSINVVNYSQHDEQDGVK"
     gene            1701..2579
                     /gene="dapA"
                     /locus_tag="OQQ19_002127"
     CDS             1701..2579
                     /gene="dapA"
                     /locus_tag="OQQ19_002127"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001311023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HCS1803753.1"
                     /translation="MFTGSIVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGT
                     TGESATLNHDEHADVVMMTLELADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLT
                     VTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGI
                     KEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGGHGVISVTANVAARDMAQMC
                     KLAAEGHFAEARVINQRLMPLHNKLFVEPNPIPVKWACKELGLVATDTLRLPMTPITD
                     SGRETVRAALKHAGLL"
     gene            2596..3630
                     /gene="bamC"
                     /locus_tag="OQQ19_002128"
     CDS             2596..3630
                     /gene="bamC"
                     /locus_tag="OQQ19_002128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708316.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamC"
                     /protein_id="HCS1803754.1"
                     /translation="MAYSVQKSRLAKVAGVSLILLLAACSSDSRYKRQVSGDEAYLEA
                     APLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKALDIRPPAQPLALVSGVRTQFTGD
                     TASLLVENGRGNTLWPQVVSVLQAKNYTITQRDDAGQTLTIDWVQWNRLDEDEQYRGR
                     YQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSASDAAN
                     AAQNRASTTMDVQSAADDTGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNM
                     AVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDAL
                     VAVFQAAFSK"
     gene            3843..4556
                     /gene="purC"
                     /locus_tag="OQQ19_002129"
     CDS             3843..4556
                     /gene="purC"
                     /locus_tag="OQQ19_002129"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HCS1803755.1"
                     /translation="MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFD
                     RKGMVNNKFNYFIMSKLAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLV
                     KRLGIEEGIELNPPLFDLFLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKAND
                     VLKKRFDDAGLILVDFKLEFGLYKGEVVLGDEFSPDGSRLWDKETLEKMDKDRFRQSL
                     GGLIEAYEAVARRLGVQLD"
     gene            4724..5587
                     /locus_tag="OQQ19_002130"
     CDS             4724..5587
                     /locus_tag="OQQ19_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HCS1803756.1"
                     /translation="MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVV
                     LVAGYYGVDLTGLMTGQPVSQQQSTRSISPNEDEAAKFTSVILATTEDTWGQQFEKMG
                     KTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFA
                     QGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHNMQ
                     QQGVLETGDLEEALNAAQAIGDDRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGD
                     PAQCNTFGKSI"
     gene            5602..7617
                     /gene="tmcA"
                     /locus_tag="OQQ19_002131"
     CDS             5602..7617
                     /gene="tmcA"
                     /locus_tag="OQQ19_002131"
                     /EC_number="2.3.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cytosine(34) acetyltransferase TmcA"
                     /protein_id="HCS1803757.1"
                     /translation="MAELTALYTLTAQMKREGIRRLLVLSGEEGWCFDHALKLRDALL
                     GDWLWISPQPDAENHCSPSALQTLLGREFRHAVFDARHGFDAAAFAALSGTLKAGSWL
                     VLLLPVWEEWENQPDADSLRWSDCPDPIATPHFVQHLKRVLTADNDAILWRQNQPFSL
                     AHFTPRTDWHPATGAPQPEQQQLLQQLLTMPPGVAAVTAARGRGKSALAGQLISRIAG
                     SAIVTAPAKAATDVLAQFAGEKFRFIAPDALLASDEQADWLVVDEAAAIPAPLLHQLV
                     SRFPRTLLTTTVQGYEGTGRGFLLKFCARFPHLHRFELQQPIRWAQGCPLEKMVSEAL
                     VFDDENFTHTPQGNIVISAFEQTLWRSEPETPLKVYQLLSGAHYRTSPLDLRRMMDAP
                     GQYFLQAAGENEIAGALWLVDEGGLSQQLSQAVWAGFRRPRGNLVAQSLAAHGSNPLA
                     ATLRGRRVSRIAVHPARQREGVGQQLIASALQYTQDLDYLSVSFGYTGELWRFWQRCG
                     FVLVRMGNHREASSGCYTAMALLPMSDAGKQLAEREHYCLRRDAQALAQWNGETLPVD
                     PLNDIVLSDDDWLELAGFAFAHRPLLTSLGCLLRLLQTSELALPALRGRLQKNASDAQ
                     LCTTLKLAGRKMLLVRQREEAAHALFALNDVRTERLRDRITQWQFFH"
     gene            7691..8389
                     /gene="ypfH"
                     /locus_tag="OQQ19_002132"
     CDS             7691..8389
                     /gene="ypfH"
                     /locus_tag="OQQ19_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311362.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HCS1803758.1"
                     /translation="MKHDHFVVQSPDKPVQQLLLLFLGVGDNSVAMGEIGSWFAPLFP
                     DALVVSVGGAEPSGNPAGRQWFSVQGITEDNRQARVDAIMPTFIETVRYWQKQSGVGA
                     NATALIGFSQGAIMALESIKAEPGLASRVIAFNGRYASLPETASTATTIHLIHGGEDP
                     VIDLAHAVAAQEALISAGGDVTLDIVEDLGHAIDNRSMQFALDHLRYTIPKHYFDEAL
                     SGGKPGDDDVIEMM"
     gene            complement(8499..8699)
                     /locus_tag="OQQ19_002133"
     CDS             complement(8499..8699)
                     /locus_tag="OQQ19_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpfN family protein"
                     /protein_id="HCS1803759.1"
                     /translation="MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPP
                     HRDFNDKWDDDDDWPKKDQPKK"
     gene            complement(8727..9854)
                     /gene="dapE"
                     /locus_tag="OQQ19_002134"
     CDS             complement(8727..9854)
                     /gene="dapE"
                     /locus_tag="OQQ19_002134"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020078199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HCS1803760.1"
                     /translation="MSCPVIELTQQLIRRPSLSPDDAGCQALLIERLQAIGFTVERMD
                     FADTQNFWAWRGQGETLAFAGHTDVVPPGDADRWINPPFEPTIRDGMLFGRGAADMKG
                     SLAAMVVAAERFVAQHPNHTGRLAFLITSDEEASAHNGTVKVVEALMARNERLDYCLV
                     GEPSSIEVVGDVVKNGRRGSLTCNLTIHGVQGHVAYPHLADNPVHRAAPFLNELVAIE
                     WDQGNEFFPATSMQIANIQAGTGSNNVIPGELFVQFNFRFSTELTDEMIKAQVLALLE
                     KHQLRYTVDWWLSGQPFLTARGKLVDAVVNAVEHYNEIKPQLLTTGGTSDGRFIARMG
                     AQVVELGPVNATIHKINECVNAADLQLLARMYQRIMEQLVA"
     gene            complement(9858..10214)
                     /locus_tag="OQQ19_002135"
     CDS             complement(9858..10214)
                     /locus_tag="OQQ19_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HCS1803761.1"
                     /translation="MVTLYGIKNCDTIKKARRWLEANNIDYRFHDYRVDGLDSELLNG
                     FINELGWEALLNTRGTTWRKLDETTRNKITDAASAAALMTEMPSIIKRPLLCAPGKPM
                     LLGFSDSSYQQFFHEV"
     gene            10595..10654
                     /gene="ypfM"
                     /locus_tag="OQQ19_002136"
     CDS             10595..10654
                     /gene="ypfM"
                     /locus_tag="OQQ19_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YpfM"
                     /protein_id="HCS1803762.1"
                     /translation="MIERELGNWKDFIEVMLRK"
     gene            complement(10753..13865)
                     /gene="acrD"
                     /locus_tag="OQQ19_002137"
                     /pseudo
     CDS             complement(10753..13865)
                     /gene="acrD"
                     /locus_tag="OQQ19_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416965.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease AcrD"
     gene            complement(14028..15728)
                     /gene="narQ"
                     /locus_tag="OQQ19_002138"
     CDS             complement(14028..15728)
                     /gene="narQ"
                     /locus_tag="OQQ19_002138"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarQ"
                     /protein_id="HCS1803763.1"
                     /translation="MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAIN
                     IAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHL
                     NANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIG
                     IFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTSLPNELGLLAKTFNQM
                     SSELHKLYLSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRD
                     NEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLN
                     SVSSMLGRGLYFNQAQKHFQHLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP
                     EDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAK
                     LTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD
                     NGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM
                     "
     gene            15934..17913
                     /gene="aegA"
                     /locus_tag="OQQ19_002139"
     CDS             15934..17913
                     /gene="aegA"
                     /locus_tag="OQQ19_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent uric acid utilization protein
                     AegA"
                     /protein_id="HCS1803764.1"
                     /translation="MNRFIMANSQQCLGCHACEIACVMAHNDEQHVLSQHHFHPRITV
                     IKHQQQRSAVTCHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTM
                     QIVLTPVAAGKVKATAHKCDLCAGRENGPACVENCPADALQLVTDVALSGMAKSRRLR
                     TARQEHQPWHASTAAQEMPVMSKVEQMQATPARGEPDKLAIEARKTGFDEIYLPFRAD
                     LAQREASRCLKCGEHSVCEWTCPLHNHIPQWIELVKAGNIDAAVELSHQTNTLPEITG
                     RVCPQDRLCEGACTIRDEHGAVTIGNIERYISDQALAKGWRPDLSHVTKVDKRVAIIG
                     AGPAGLACADVLTRNGVAVTVYDRHPEIGGLLTFGIPSFKLDKSLLARRREIFSAMGI
                     HFELNCEVGKDVSLDSLLEQYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTK
                     QVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG
                     SKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPVEG
                     SEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTTNPKIFAGG
                     DAVRGADLVVTAMAEGRHAAQGIIDWLGVKSVKSH"
     gene            17981..18556
                     /gene="nudK"
                     /locus_tag="OQQ19_002140"
     CDS             17981..18556
                     /gene="nudK"
                     /locus_tag="OQQ19_002140"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose pyrophosphatase NudK"
                     /protein_id="HCS1803765.1"
                     /translation="MTQQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDR
                     GNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDNDEPEVCIRKEAI
                     EETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPF
                     SQALEMIKTGEIRDGKTVLLLNYLQTSHLMD"
     gene            18682..19725
                     /locus_tag="OQQ19_002141"
     CDS             18682..19725
                     /locus_tag="OQQ19_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1176 domain-containing protein"
                     /protein_id="HCS1803766.1"
                     /translation="MRYRIFLLFFFALLPTSLVWAAPAQRAFSDWQVTCNNQNFCVAR
                     NTGDHNGLVMTLSRSAGAHTDAVLRIERGGLKSPEASEGEIAPRLLLDGEPLALSGDK
                     WRISPWLLVTDDTATITAFLQMIQEGKAITLRDGNQTISLSGLKAALLFIDAQQKRVG
                     SETAWIKKGDEPPLSVPPAPALKEVAVVNPTPTPLSLEERNDLLDYGNWRMNGLRCSL
                     DPLRREVNVTALTDDKALMMISCEAGAYNTIDLAWIVSRKNPLASRPVRLRLPFNNGQ
                     ETNELELMNATFDEKSRELVTLAKGRGLSDCGIQARWRFDGQRFRLVRYAAEPTCDNW
                     HGPDAWPTLWITR"
     gene            complement(19835..20734)
                     /locus_tag="OQQ19_002142"
                     /pseudo
     CDS             complement(19835..20734)
                     /locus_tag="OQQ19_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311354.1"
                     /note="catalyzes the formation of ribose 5-phosphate and
                     xylulose 5-phosphate from sedoheptulose 7-phosphate and
                     glyceraldehyde 3-phosphate; can transfer ketol groups
                     between several groups; in Escherichia coli there are two
                     tkt genes, tktA expressed during exponential growth and
                     the tktB during stationary phase; frameshifted;
                     incomplete; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="transketolase"
BASE COUNT         5011 a         5301 c         5549 g         4873 t
ORIGIN      
        1 aaatggtagt gtccgctatt gccagtacac ctcaggatcg catcatccct ctgggagatg
       61 gcattgaccg ggcagacctg caggcaaggg gcttcctcac agtgatgaca cacgacaggg
      121 gcagtgattg ttgacgtctt cgccagggcc aggcgcgggt gttgctgtaa accttgcgtt
      181 ttatgcacgt ccgaacaggc agcgagacag gtattacatc ctgtacacca cagtggttcg
      241 gccaccacaa agcggttcat gtcggctcct tgaaaatgat atgaaacatt gcatttcata
      301 ttgcataaag gatgccagtc tgattaattt aatatattca ataaattatg tattaacagg
      361 gttctgaacg gtacaaaaat gatggtcatt aacgttcagc aaaaaatgga ttcgacaccc
      421 gtgtcgcagg ggaaagcgag aatgtgatct tgatcacgag aagtgaggtg tgctgaccgc
      481 aagcgcagcc agcacggaat ggagcaaagt aatcaggcgt gttctttcag ccagttcagc
      541 acaacgtcgt ggtgattgct ggttttaaaa tcgtcaaaga catgttcgat tttgccatca
      601 gcgtcaatca ggaagctgat gcgatgaata ccatcgtagg ttttgcccat gaaggacttt
      661 tcaccccaga cgccgaattg ttcgcacacc tggtggtcct catcagacag gagcgtaaag
      721 ttaagcagct ctttttccgc aaaacgggag agtttttcgg gtttatcggt gctgataccc
      781 agcacatcaa cgcccgcttt tttcaactca tccatgttat cgcgtaagcc gcaggcctgt
      841 acggtacagc cgggggtcat ggctttcggg tagaaataaa ccagaacacg ctgtccctgg
      901 aagtcggtca aattaacttg ttctccgtct tgatccggca agctaaattt cggtgcgata
      961 tcaccggctt tcagtggatt cattacttaa ctccatcctg ttcatcatgt tgggaataat
     1021 tgacgacgtt aatactgcct tgtgcattga gttctgtaca tagggctttg aacgcttgct
     1081 caatatttgc tgcgtccgca gatgcggggc tgtgggcggt gatctgaata tgcaactgcg
     1141 cagcccgttc attttcagca ggttgcgtgc gcgacaccag ctccgcaatg ttcatatgat
     1201 gcgcgtcgaa aagtgctgtg aagcgttcaa ttaaatgcgg ggagtctgca acatcgacct
     1261 gaacccagac agatgctggc attggcggac gcggacgcgc cgtcgtgcgc ttcatcacga
     1321 ttaaaagatc cagttcggca cctttcaacg gtaacgttga ttcaatcaga gtaatggcat
     1381 tccatgaacc ggaaagcagc atgataaacg tgaactcttc tcccagcatc gccaggcgac
     1441 tgtcttcaat attacagccg caactactga catgacgggt gatggtgttc acaattccag
     1501 ggcgatcggc acccaacgca gtgatcacca gataatgttg cgatgacagt gtcaaactgg
     1561 ttattccttt aaggggtgag ttgttcttaa ggaaagcata aaaaaaacat gcatacaaca
     1621 atcagaacgg ttctgtctgc ttgcttttaa tgccatacca aacgtaccat tgagacactt
     1681 gtttgcacag aggatggccc atgttcacgg gaagtattgt cgcgattgtt actccgatgg
     1741 atgaaaaagg taatgtctgt cgggctagct tgaaaaaact gattgattat catgtcgcca
     1801 gcggtacttc ggcgatcgtt tctgttggca ccactggcga gtccgctacc ttaaatcatg
     1861 acgaacatgc tgatgtggtg atgatgacgc tggagctggc tgacgggcgc attccggtga
     1921 ttgccgggac cggtgctaac gctactgcgg aagccattag cctgacgcag cgcttcaatg
     1981 acagcggtat cgtcggctgc ctgacggtaa ccccttacta caatcgtccg tcgcaagaag
     2041 gtttgtatca gcatttcaaa gccatcgctg aacatactga cctgccgcaa attctgtata
     2101 atgtgccgtc ccgtactggc tgcgatctgc tcccggaaac ggtgggccgt ctggcgaaag
     2161 taaaaaatat tatcggaatc aaagaggcaa cagggaactt aacgcgtgta aaccagatca
     2221 aagagctggt ttcagatgat tttgttctgc tgagcggcga tgatgcgagc gcgctggact
     2281 tcatgcaatt aggcggtcat ggggttattt ccgttacggc taacgtcgca gcgcgtgata
     2341 tggcccagat gtgcaaactg gcagcagaag ggcattttgc cgaggcacgc gttattaatc
     2401 agcgtctgat gccattacac aacaaactat ttgtcgaacc caatccaatc ccggtgaaat
     2461 gggcatgtaa ggaactgggt cttgtggcga ccgatacgct gcgcctgcca atgacaccaa
     2521 tcaccgacag tggtcgtgag acggtcagag cggcgcttaa gcatgccggt ttgctgtaaa
     2581 gtttagggag atttgatggc ttactctgtt caaaagtcgc gcctggcaaa ggttgcgggt
     2641 gtttcgctta ttttattact cgctgcctgt agttctgact cacgctataa gcgtcaggtc
     2701 agtggtgatg aagcctacct ggaagcggca ccgcttgcgg agcttcatgc cccggctgga
     2761 atgattttgc cggtgacctc cggtgattat gcaatcccgg tgaccaacgg tagtggtgct
     2821 gtcggtaagg cgctggacat tcgtccacca gcccagccgc tggcactggt ttctggcgtg
     2881 cgtacccagt tcacgggcga taccgcttca ttgctggtgg aaaatggtcg tggcaatact
     2941 ctgtggccgc aggtggttag cgtgctgcag gcgaaaaact acaccatcac ccaacgtgat
     3001 gatgctggtc agacactgac catcgattgg gtacaatgga accgtctgga cgaagacgag
     3061 cagtatcgtg gtcgttatca aatctctgtt aagccgcagg gttatcagca ggcggttacg
     3121 gttaaactgc tgaacctgga acaggcgggc aaaccggttg cagacgcggc ttccatgcag
     3181 cgttacagca cggagatgat gaacgttatt tccgccggtc tggataaatc tgcctctgac
     3241 gccgcgaacg ctgcgcaaaa tcgtgcctcc accactatgg acgtacaaag tgcagctgat
     3301 gacaccggtt taccgatgct ggtcgtacgc gggccgttca atgtggtttg gcaacgtctg
     3361 ccagcggcgc tggaaaaagt gggcatgaaa gtgaccgaca gcacccgttc gcagggtaac
     3421 atggccgtaa cttataagcc gctgtctgac agcgactggc aggaactggg cgcgagcgat
     3481 ccaggcctgg catccggtga ctataaactg caggttggcg atttagataa ccgcagcagc
     3541 ctacagttca tcgatccgaa aggtcatact ctgactcaga gtcagaacga cgcgctggta
     3601 gctgtcttcc aggctgcgtt tagcaagtaa aaatacaggg ctggagtcat ccggcccttt
     3661 tttctgatat gatacgcaaa cgtgtgcgtc ggcagaaaaa tgcaatttta gcggtaattc
     3721 gcacgaaatt tgtttgtcgg acgtaggtcg gataaggcgt tcttgccgca tccgacaaaa
     3781 catccggcac accagacagc aaaagatttt aaaacgttaa ttcacaccca ggagtgataa
     3841 agatgcaaaa gcaagctgag ttgtatcgtg gtaaagcgaa aaccgtatac agcacggaaa
     3901 acccggacct gttggtgctc gaattccgca atgatacgtc agcaggggat ggcgcgcgca
     3961 ttgagcagtt tgatcgcaaa ggtatggtga acaacaagtt caactacttc attatgagca
     4021 aactggctga agcgggtatc ccgactcaaa tggagcgtct gctctccgat accgaatgtc
     4081 tggtgaaaaa gctggatatg gtgccggttg agtgtgtcgt gcgtaaccgt gctgctggct
     4141 ctctggtgaa acgtcttgga atcgaagaag gtattgagct gaacccgccg ctgttcgatc
     4201 tgttcctgaa aaacgatgcc atgcacgatc cgatggtcaa cgaatcttac tgcgaaacct
     4261 ttggctgggt gagcaaagag aacctggcgc gtatgaaaga gctgacctac aaagcgaacg
     4321 acgtgctgaa aaaacggttc gatgatgctg gtctgattct ggtcgacttc aagctggagt
     4381 ttggtctgta caaaggtgaa gtggtactgg gcgatgagtt ctccccggac ggcagccgcc
     4441 tgtgggacaa agaaacactg gagaaaatgg acaaagaccg tttccgccag agcctcggtg
     4501 gcctgatcga agcctatgaa gccgtcgccc gccgcctggg tgtacagctg gactgatttt
     4561 tctgttcatc atcttgccgt gcagctggca cggcaagaca accgctctcg gaatatatgc
     4621 attgaacgct cattcctccg ccatttcatc ccgctttcct gtggtaatct tcctctgaac
     4681 cacctacgat catttctata atgaatatat tgttgaggta tctatgcgtt ggcaagggcg
     4741 acgtgaaagt gacaatgttg aagacaggcg caacagctcc ggtggtccgt ctatgggcgg
     4801 tcccggtttt cgcctgccaa gcggtaaagg cgggctgatt ttactgatag tcgtgctggt
     4861 tgcaggctac tatggtgttg atttaaccgg gttaatgact ggacagccgg tttcccaaca
     4921 acaatcaacg cggtccatta gccctaatga agacgaagct gcaaaattca cctcggtgat
     4981 tctggcaacc acggaagaca cctggggaca acagttcgag aagatgggta agacctatca
     5041 gcaaccgaag ctggtcatgt accgtggaat gacgcgcacc ggctgcgggg cgggccagtc
     5101 cattatgggg ccgttctatt gcccggcgga tggcacagtt tatatcgatc tctccttcta
     5161 tgatgacatg aaagacaaac ttggcgcgga tggcgatttt gcccaggggt acgttatcgc
     5221 ccatgaagtc ggtcatcatg tgcagaaact gttaggcatc gagccgaaag ttcgtcaact
     5281 gcaacaaaac gcgacgcagg cggaagtgaa ccgcttatct gtgcgtatgg aactccaggc
     5341 cgactgtttt gccggtgtct gggggcataa catgcagcag caaggcgttc tggaaaccgg
     5401 cgatctggaa gaggcgctga atgcggcgca ggccatcggc gatgaccgtt tacaacagca
     5461 aagtcagggg cgagtagtac cagacagttt cacacatggc acttctcagc aacgctacag
     5521 ctggtttaaa cgtggtttcg acagcggcga tccggcacaa tgcaatactt ttggtaaaag
     5581 catttaattt ccggggcagg gatggctgaa ctgactgcgc tttacacatt aacagcgcaa
     5641 atgaaacgtg aagggatccg ccgcttgctg gtgttgagcg gggaagaggg ttggtgtttt
     5701 gatcatgcgc ttaagttgcg tgatgcctta cttggcgact ggctgtggat ttcgccgcag
     5761 ccagatgctg aaaaccactg ttctccctcg gcgctacaaa ctttacttgg gcgcgagttc
     5821 cggcatgcgg tattcgacgc ccgccacggc tttgatgccg ctgcctttgc ggcacttagc
     5881 ggaacgttga aagcgggaag ctggctggtt ttgttactcc ctgtatggga agagtgggaa
     5941 aaccaacctg atgccgactc gctgcgctgg agtgattgcc ctgaccctat tgcgacgccg
     6001 cattttgtcc agcatctcaa acgcgtactt acggcggata acgacgctat tctctggcgg
     6061 caaaaccagc cgttctcgtt ggcgcatttt actccccgta ctgactggca ccccgcgacc
     6121 ggcgcaccac aaccagaaca acagcaactc ttacagcagc tactgaccat gccgccgggc
     6181 gtggcagcgg taacggctgc gcgtgggcgc ggtaagtcgg cgctggcagg gcaactcatt
     6241 tctcgtattg cgggcagtgc gattgtcacc gcgcccgcaa aagcggcaac ggatgtactg
     6301 gcacaatttg cgggcgagaa gtttcgcttt attgcgccgg atgccttgtt agccagcgat
     6361 gagcaagccg actggctggt ggtcgatgaa gccgcagcca tacctgcgcc gttgttgcat
     6421 caactggtat cgcgttttcc tcgaacgttg ttaaccacta cggtgcaggg ctacgaaggc
     6481 accggacgtg gttttttgct gaaattttgc gctcgctttc cgcatttaca ccgttttgaa
     6541 ctgcaacagc cgatccgctg ggcacaggga tgcccgctgg aaaaaatggt tagtgaggca
     6601 ctggtttttg acgatgaaaa cttcacccat acaccacaag gcaatatcgt catttccgca
     6661 tttgaacaaa cgttatggcg aagcgagcca gaaacgccgt taaaggttta tcagttattg
     6721 tctggtgcgc actaccggac ttcgccgctg gatttacgcc ggatgatgga tgcaccaggg
     6781 caatattttt tacaggcggc tggcgaaaac gagattgccg gagcgctgtg gctggtggat
     6841 gaggggggat tatctcaaca actcagtcag gcggtatggg caggttttcg tcgcccgcgg
     6901 ggtaatctgg tggcccagtc gctggcggcg cacggtagca atccactggc agcgacattg
     6961 cgtggacggc gggtcagccg gatagcagtt catccggctc gtcagcgcga aggcgttggg
     7021 caacagctca ttgccagcgc tttgcaatat acgcaagacc tcgactatct ttcggtgagt
     7081 tttggttaca ccggggagtt atggcgtttc tggcaacgct gcggttttgt gctggtacga
     7141 atgggtaatc atcgtgaagc cagcagtggt tgctatacgg cgatggcgct gttaccgatg
     7201 agtgatgcgg gtaaacagct ggctgaacgt gagcattact gtttacgtcg cgatgcgcaa
     7261 gctctcgcgc agtggaatgg cgaaacactt cctgttgatc cactaaacga tatcgtgctt
     7321 tctgacgacg actggcttga actggccggt tttgcttttg ctcatcgtcc gctattaacg
     7381 tcgttaggtt gcttattgcg tctgctacaa accagtgaac tggcattacc ggcgctgcgt
     7441 gggcgtttac agaaaaatgc cagtgatgcg cagttatgta ccacacttaa acttgcaggc
     7501 cgcaagatgt tactggtccg tcagcgggaa gaggccgcgc atgcgctgtt cgcacttaat
     7561 gatgttcgca ctgagcgtct gcgcgatcgc ataacgcaat ggcaattttt tcactgactc
     7621 cttcaatttt ctcccatggt cattgtgagc cagcggcgta aaattaatga catcagttaa
     7681 ggagttcgcc atgaaacatg accattttgt tgttcaaagc ccggataaac ctgtgcaaca
     7741 gttgttactg cttttcctcg gtgtcgggga taactcggtg gcaatggggg aaataggcag
     7801 ttggtttgca ccgctgtttc ctgatgcgct ggtggtgagt gtcggtggcg cggagccgag
     7861 cggtaatccg gcggggcgtc agtggttttc ggtgcagggt attacggaag ataatcgcca
     7921 ggcgcgtgtg gatgccatca tgccgacgtt tattgaaacg gtacgctact ggcagaaaca
     7981 gagtggagta ggggctaacg ccacggcgtt aatcggtttc tctcaaggcg cgattatggc
     8041 gctggagagt attaaagccg aaccgggcct tgcttcacgc gtaattgctt ttaacggacg
     8101 ctatgcgagc ctgccggaaa ccgcgtctac agcaacgaca attcacctga ttcatggcgg
     8161 tgaagatccg gttatcgatc tggcgcatgc ggttgcggcg caggaagcgt taatcagtgc
     8221 cggtggtgac gtgacgctgg atatcgtgga ggatttaggc catgcgatcg acaatcgcag
     8281 tatgcaattt gccctggatc acttgcgtta taccattccg aaacattatt tcgacgaagc
     8341 gctaagtggc ggtaagcctg gcgatgatga tgtgattgaa atgatgtaaa agacagatta
     8401 cctggcctga taagacgcgt gagcgtcgca tcaggcatcg ttcaccattg ccggatgcgg
     8461 cgttaacgcc ttatccggcc tacggttgag cactcagctt acttcttcgg ttgatccttt
     8521 ttcggccagt cgtcgtcatc gtcccactta tcgttgaaat cacgatgcgg gggaagctcc
     8581 ggcttgttgg cgagaaattt cttgtggtcg acgcgcttga gatctttaat cacgttcagc
     8641 aggacgccta ccaaaaagac aatcaccaga atccaccaat atttagccag ccagtccatg
     8701 cttatttcct cttgcagaac cactcatcag gcgacgagct gttccatgat acgttgatac
     8761 atacgggcaa gtagctgcag gtcggcagcg ttcacacatt cattaatttt atgaatagtg
     8821 gcattgaccg gcccgagttc caccacctgc gcccccatgc gagcaataaa gcgcccgtcg
     8881 gacgttccgc ctgtggtcag tagctgcggt ttaatttcat tatagtgctc aaccgcgtta
     8941 acgaccgcat ccaccagttt accgcgcgcg gtcaaaaatg gctgcccgga aagccaccaa
     9001 tccaccgtat agcgcagttg atgtttttca agcagggcaa gcacctgcgc tttgatcatc
     9061 tcatcagtca gttcggtgct gaagcggaag ttaaactgca caaacagttc acccggaata
     9121 acattgttac tgcccgttcc cgcctgaata ttagcaatct gcatactggt cgccgggaaa
     9181 aattcattgc cctgatccca ctcaatagcc actaattcat taaggaaagg tgctgcgcga
     9241 tgtactggat tgtcagccag atgcgggtag gccacatgcc cctgaacgcc atgaatggta
     9301 aggttgcagg ttaacgatcc gcgacgacca tttttcacca catcaccaac cacttcgata
     9361 ctcgacggtt cgccgaccag gcagtaatcg agacgctcat tacgtgccat caacgcttcg
     9421 acgactttta ccgtaccgtt gtgggcactg gcttcttcat cagaggtgat cagaaatgcc
     9481 agtcgccccg tatggttggg atgttgtgcg acaaagcgtt ctgccgctac caccatcgcc
     9541 gccagcgagc ctttcatatc tgccgcaccg cgcccgaata acatgccatc acgaatggtg
     9601 ggttcaaacg gcggattgat ccaacgatcg gcgtcgccag gcggcaccac gtcggtatgc
     9661 ccggcaaagg ctaacgtttc accttgccca cgccatgccc aaaaattctg cgtatcggca
     9721 aagtccatgc gttcaacggt aaaaccgatc gcctgcaaac gttcaatcaa caaagcctgg
     9781 catcctgcgt catcaggact cagggaaggg cggcgaataa gctgttgtgt cagctcaata
     9841 accgggcacg acatagacta cacctcatgg aaaaattgct gataactgga atcactgaaa
     9901 cccagcagca taggcttacc aggcgcgcag agcaatggac gtttgataat tgaaggcatt
     9961 tcagtcatta atgccgccgc agaggccgca tcggtgattt tattgcgggt ggtttcgtcc
    10021 agtttacgcc aggttgtacc acgggtgttc agtaacgctt cccagcctaa ttcgttgata
    10081 aaaccgttca ataattcgct gtccagccca tcgacgcggt aatcatgaaa acgatagtcg
    10141 atgttattgg cttccagcca acggcgagcc tttttaatgg tgtcacaatt tttgatgccg
    10201 taaagtgtaa ccataatgaa tcctttttcg atctatgaga ataaatactc atttaagggt
    10261 gaaaacattt tgcctgcaaa tgattatcag gaaatataac attatcgaag tattcaaatt
    10321 aacaactatt aaataatatt aaacattttt aacgtaaaca ttaagaatat tcatcttgtt
    10381 atctgtctgt attttaacca gaattaaatc agtattagat gccgtatgaa tatctcgaaa
    10441 tgttgctgtg tatcacatac aaattatcac cgcaggacca tagtatttac ataaggtttg
    10501 tcccccggag gtagtcatcg cagcaatcga gtaaattagc ttcaccacgg tatattgttt
    10561 ccgtagaata cccataatta taagagaggt tgttatgatt gaacgtgaac tggggaactg
    10621 gaaagacttt atcgaagtta tgcttcgtaa gtaattcctg agacaaagta caaacagcaa
    10681 gaacccgctg agcaggttct taatcggaaa gttgaaaaag gcgacacatt agcatgtcgc
    10741 cttttttatt gcttattccg ggcgcggctt cagcgggaag cggcggcgca ccagtacaaa
    10801 gaacagcggc acgaagtaaa tagccagaat agtggccgaa atcatcccgc ccattacgcc
    10861 agtacccacc gcatgctgac caccggaacc ggcacccgtg ctggttgcca ttggcaatac
    10921 gccgaagata aatgccagcg aggtcatcag aatcgggcgt aaacgctgac ggcaggcgtg
    10981 gagcgtcgct tcaaacaggt cgtggccttt ttggttcatc tcgttagcaa actcgacgat
    11041 caggatggcg tttttcgccg ataaaccaat gaccgttaac aggcccacct ggaagtaaac
    11101 gtcgttttcc agcccgcgca tccaggttgc cagcagcgcg ccgataaccc ccagcggcac
    11161 gaccagcatt accgagaacg gcaccgacca gctttcatac aacgccgcca gacacaggaa
    11221 taccaccagc aaggaaatgg cgtacagcgc cggagcctgc gcgccggaaa gccgctcctg
    11281 atacgacatc gccgtccact ccagaccaaa gccgtttggc aactgcttca ctaacgattc
    11341 cattatatcc atcgccgtac cggtactgac ccccggtgcg gcttccccaa caatctcaac
    11401 cgcagaataa ccgttatagc gttccagacg cggcgagcca gtctcccagc gtgaggtcgc
    11461 gaaagcagag aagggcacca tgccgccatc tttatttcgg acataccaga gattaatgtc
    11521 atctggcagc atgcgatacg gcgcagctgc ctgcacatag actttcttca cacgaccgcg
    11581 atccataaag tcattcacat agctcgaacc ccaggcggtt tgcagtgtgt cgttaatatc
    11641 gtcgatagca acgcccagcg cctgagcttt acgctggtcg atatcaatct gcaactgcgg
    11701 actgtcatcg aggccgttat ggcgcacacg ggttagctcc gggttttccg ccgccagcgc
    11761 cagcaactgg ttacgtgctg ccatcagcgc atcgtgacct gctccagcgt ggtcctgcaa
    11821 ctccatatca aaacccgcag aactaccaag accgctaatt gctggcgggc tgctggcgat
    11881 aacgcgagct tctttaatct tgttaaacgc ctttgttgca cgctcgataa tggcaaacga
    11941 ggtgccggtc ttactgtcgc gttcgctcca gtctttcagg cggataaaca ttcgcgccac
    12001 gttttgcccg ttacccccag ggccagaacc aacggtggca aacaccgaca tgatgttgtc
    12061 tttttcatgg gtgaagtaat atttctcgat ttgctcaacg actttcaggg tctgttgttg
    12121 ggttgaaccg ctgggcaatt gtaccgaggt agtaaacatg ccacggtctt ccagcggtaa
    12181 gaacgacgtc ggcaaacgca ggaacaggaa caccatgccg ccaagcagca ggacataaat
    12241 cacaatccag cgcaggctgc ggtggagaat tttcgccacc cctttttcgt agcgttcggc
    12301 gttgcggtta aacatctggt taaaccaggc aaaaaagcct ttttgcccgt gatgctcacc
    12361 ttttttcagt ggcttaagta gtgtggcaca cagagccgga gtgaggatca tcgctaccag
    12421 tactgacagc accatcgccg caacaatggt aatagagaac tggcgataga tggcaccggt
    12481 ggtgccgccg aagaaggcca ttggtacaaa taccgccgaa agcaccatcg caatcccgac
    12541 cagtgccccc tggatctgcc ccatcgattt acgtgtggct tcgcgaggag tgagtccttc
    12601 ctcactcata atacgttcga cgttttccac caccacgatt gcgtcatcca ccagcagacc
    12661 gatcgccagt accatcgcga acatggttaa ggtgttgacg ctgtaaccga aggcgtaaag
    12721 tacggagaag gttcccatca acaccaccgg cacggcgata gtgggtatca gcgtggcgcg
    12781 gaagttttgc aggaacagat acataacgag gaaaaccagg gcgatagctt ccagcagcgt
    12841 tttcaccacg tcttcaatgg aggctttaac aaacgaggtt gtttcatacg ccaccttgta
    12901 ttccagtccg tgcgggaagt actgcgccag ctcgtcgaga cgattgagca ccagctccct
    12961 gtcgccattt cgtttgcgcc ggaggccagt tttaccccca gcccggaggc tggcttacca
    13021 ttgaagcggc taagataatc gtatttctcc gcccccattt cgacggtggc gacatcgccc
    13081 agccttacct ctgagccgtc ttgattcacc cgcaaggtga tatcgcggaa ctgttctggt
    13141 gtttgcagca gtgactgggc gttaatggtg gcgttgagcg cctgcttatc gacggaaggt
    13201 gtaccaccaa gttgcccaac cgcaatctgc gcgttctgtg actcaatggc atcagtgaca
    13261 tctttagccg tcatctggaa actgttgagt ttcgccgggg ccagccagat acgcatggaa
    13321 tattgcgaac cataggcatc gatatccccg acgccattca cgcggcttaa cgggtcctga
    13381 atattactgg caacataatc ggcaatatcc tgtttatcca tcgaaccatc ggtagagacg
    13441 aaagcaatgg tcagaatatt ggtatcgccg gttttacgca ccgtcacgcc ctgattttgc
    13501 accgcctgcg gtaactttcg catggctgat tgcagctggt tttgtacttg ctgcacggct
    13561 tcgtccggat cggtgcctgc tttaaaactt aaagtgacag atgcctgacc ggtgccactg
    13621 ctctgagatg acatatacat gagattatcg aggccggtca tattttgctc gataacctgg
    13681 ggcacggtgt tttccagcgt ctgggccgat gcgccgggat agttagcggt cactcgcaca
    13741 ttcggtggcg cgagatcggg gtattgttca acgggcaatg aaaaaatcgc tagggtccct
    13801 gtcagacaca acaggattgc cagcacccag gcaaaaatgg ggcgatcaat aaagaaattc
    13861 gccattaaaa gaggacctcg tgtttctgcg tatcgttgta ggcttgactt gcttcactgt
    13921 agcggcaagg tacgagccaa tcgtggagaa aaaaggagtt aatgtaaatt atcatgccct
    13981 tttatactga accttaagtg caagtattct ttggtcagta ggaggcatta catcaactga
    14041 ctttcctcac cctctgcaga gcgaaagcta atactcacta acgtgccgcc gccggaaggt
    14101 tgtgaaaaag tcagcgtccc acccagccgt tccgcgcgtt cgcgcatgat attcagacca
    14161 taatgacctt cgggttcttt cggttcaccg ataccaatcc cgttatcacg gatataaacc
    14221 gtgtgattgc cgtccggcgc ggtgacgcaa ctgacggcga tttcgctggc gttggcgtgc
    14281 ttcatcgcat tcagcaccgc ttcgcgaata atttgcaaca aatgcacctg catttgcgca
    14341 tccagcgcaa gggttggcag acggcagtcg agggtcagtt tggcgctggt ttgattttgt
    14401 aacgtatcca gcatttccct caacgcggag gggagatccg cctgctgcag cgtcaggcgg
    14461 aaagtagtca acagctcgcg taactgccga taagcatcat tcaacgcctg ggaaaaatcg
    14521 gccatgatac tttgtgcggt ggcgttatct tccggtatcg aacgcttcag taacgtcaac
    14581 tggatacgta agtaagaaag tacctgagcc agcgagtcgt gcaattcgcg ggcgatggtt
    14641 gcacgttctt ccatcaacaa taaatgctga aaatgcttct gcgcctgatt aaagtacaaa
    14701 ccgcgtccca gcatcgacga aacgctgtta agcagcggtt ctgatgatga aacgtgacta
    14761 ttttgccagt gcagttcgcc gtaaaccgtc tcttgcattg tcaccggtaa aatctgcatc
    14821 ggcaattccg ggtttggttg cccttcgcta atccgccagt tttcaccgac atttaactcc
    14881 agatattcag ccgcttcatt gtcgcgaaca atctgcaaaa tatggcggaa acaatgcaca
    14941 tcaatctggc ttgtgttcag cgcctgcgaa cattgataca acacctccag acgacgcttg
    15001 gcctcgtgga gatcgcgggt cttttcttct actgacgcct ccagcgaaag gtacaattta
    15061 tgcagctcgc tcgacatctg gttaaaggtt tttgcaagca gaccaagctc attcggcaga
    15121 ctggtatcca gcggcggcga gtcgaactgc ccgtgttcaa tacgttgact ggcggtaacc
    15181 agctgattca gcggggcaac cacctgatgg cgtatacggc gcaaagtaaa aaagaccagc
    15241 gtgaaaatac cgataccgcc agccagggaa atcgccacca ccagcagcat tttgcgttca
    15301 gcgtagtgct gtaaagccag cacgaacagg tctatctgat taacataatt attaatattg
    15361 gcctgatacc acggcaaatc gcccttgctg agccgattat tcatctccag ccagttggca
    15421 ttcagatgcg catagcgagt ttttactgct tctggcacat accagacgtt gagattggtt
    15481 aataccggtg aatgcagtgc ctgctgaaac aactggcgat gtgcattgag ttgtggactg
    15541 ccactttgca agtcgtagcc caggcggtaa ctctgcatac gcagcgatcc ggcaatattg
    15601 atagcctcag cgtcgcgcaa actgctcgcc agagttagca gagcgatacc cgtggaaaga
    15661 atcgacagca gcacaatgta aaaaaaggcc cgggccagac tggccgagac gggtcgttta
    15721 acaatcacac gcgtcttctc cacaaaaaat cattaatgtt ccagttcgct gaaacgcaat
    15781 ttagtcagtg atgggattat ttgagctgcc acagtttata gcgaaatagt tacttattct
    15841 gggcacatga acattgccga ttcccctgta agtcgggtaa taacaacact catataaaga
    15901 ataaggtttt tacaaccaaa aaagaaggtc gttatgaatc gttttattat ggccaacagt
    15961 cagcaatgtc tgggttgtca tgcttgtgaa atcgcctgtg tcatggctca caatgatgag
    16021 caacatgtcc tgagccaaca ccattttcat ccccgaatta cggttatcaa acatcagcag
    16081 caacgtagtg cagtgacctg tcaccattgt gaagatgcgc cctgcgcccg tagctgccct
    16141 aatggcgcaa tcagccacgt tgatgacagc attcaggtca atcagcaaaa gtgtattggc
    16201 tgtaaatcct gcgtggtggc ctgtccgttt ggtacgatgc aaatcgtcct gacacccgtc
    16261 gcggcaggaa aagtaaaagc cacggcgcat aaatgcgacc tttgtgcagg gcgcgaaaac
    16321 ggtcctgcct gtgtcgagaa ttgcccggcg gacgcgctgc aactggtcac tgacgtcgca
    16381 ctctccggca tggcgaaatc ccgccgcttg cgcaccgcac gtcaggagca tcaaccgtgg
    16441 catgccagta ccgctgcaca agaaatgccg gtaatgagta aagtcgaaca aatgcaggca
    16501 acgcccgcgc gtggcgagcc ggataaactg gcgattgaag cgcgcaaaac cggttttgat
    16561 gaaatttatc tgccatttcg cgccgacctg gcacaacggg aagcctcgcg ctgccttaag
    16621 tgcggcgagc acagcgtttg tgaatggacc tgcccgctgc ataaccatat tccgcagtgg
    16681 attgaactgg tgaaagccgg aaacatcgac gccgccgtcg agctttctca ccagaccaac
    16741 accctgccgg aaattaccgg acgcgtttgt ccgcaagacc gtttgtgtga aggtgcctgt
    16801 actattcgcg atgagcacgg cgcggtaact atcggcaaca ttgaacgcta tatttcagat
    16861 caggcgttgg cgaaaggttg gcgtcctgac ttaagtcatg tcaccaaagt ggacaagcgg
    16921 gtggcgatta tcggggcagg tccggcaggg ctggcctgtg cggatgttct gacccgcaat
    16981 ggcgtggcgg tgacggtgta cgatcgccat ccagaaatcg gtggcttgct cactttcggc
    17041 attccttctt tcaaactgga taaatccctg ctggcacgcc gtcgggaaat cttcagcgcg
    17101 atggggattc acttcgaact caattgtgaa gtgggtaaag atgtctcttt ggattcgctt
    17161 ttggaacaat acgacgcggt cttcgttggc gtaggcactt accgttccat gaaagcgggt
    17221 ttacccaatg aagatgcgcc gggcgtttat gacgcgctgc cgttcctcat cgccaacact
    17281 aaacaggtga tggggctcga agagctaccg gaagagccgt ttatcaatac cgccggactt
    17341 aacgtcgtgg tactgggcgg cggcgacacc gcgatggact gtgtgcgtac tgcgctgcgc
    17401 cacggcgcga gtaacgtcac ctgcgcttat cgtcgtgatg aagctaacat gccaggctcg
    17461 aagaaagagg tgaagaacgc ccgcgaagag ggggccaact tcgaatttaa cgtccagccg
    17521 gtggcgcttg agctgaatga acaaggtcac gtttgcggga ttcgtttcct gcgcacgcgt
    17581 cttggcgagc cggatgccca ggggcgtcgg cgtccagtac cggtggaagg cagtgaattt
    17641 gtcatgccag ccgacgcggt gattatggcg tttggcttca atccgcacgg gatgccgtgg
    17701 ctggagtcgc acggtgtaac ggtagacaaa tggggccgca tcatcgcgga tgtggaaagc
    17761 cagtaccgtt accagaccac caatccgaaa atcttcgccg gtggcgacgc cgtgcgtggt
    17821 gcggatctgg tggttaccgc aatggcagaa ggacgtcatg cggcacaggg gattattgac
    17881 tggctggggg taaaatcagt caaatctcac tgatagcctg cgcagacaaa cccgacttca
    17941 cagcgtaaga taattgttca tttcgcgctg tggagtcggt atgacgcaac aaatcaccct
    18001 cattaaagac aaaattctct ccgataacta tttcaccctg cacaacatta cctacgatct
    18061 cacgcgcaaa gatggcgaag ttatccgcca taaacgtgaa gtttacgatc gcggtaatgg
    18121 tgcgacgatc ctcctgtaca acgcgaagaa aaagaccgtg gttctgattc gtcagttccg
    18181 tgtcgctacc tgggttaatg gcaatgaaag cgggcagctg attgaaacct gcgccgggct
    18241 gctggataac gacgaaccgg aagtgtgcat tcgtaaagaa gcgattgaag agacgggcta
    18301 tgaagtgggc gaagtgcgca aattatttga actgtatatg tcgccaggcg gtgtgactga
    18361 gctaatccac ttttttatcg ccgaatacag tgacaatcag cgcgctaacg ccggtggcgg
    18421 tgtcgaagat gaagatattg aagtgctcga gctgccgttc agccaggcgc tggagatgat
    18481 caaaaccggc gagatacgtg acggtaagac ggtgttattg cttaactatt tgcaaacgtc
    18541 acatttaatg gactgaaaaa taacaataat atttcgttgt ttattattgg ctcaatccga
    18601 caaatccgat tgagccgcgc tacctgcgca acgaagatac gacttgtgct gtttgtttga
    18661 acttctgggg tcgtaccgtc catgcgctat cgcattttcc ttctcttttt tttcgctttg
    18721 ttgccgacgt ctttggtgtg ggcggcacca gcgcaacggg cgttttccga ctggcaggtc
    18781 acctgtaata accaaaactt ctgcgtggcg cgtaatacgg gcgatcataa tggactggtg
    18841 atgaccctga gccgcagcgc cggggcgcat accgatgccg ttttacgtat tgagcgcggc
    18901 ggattgaagt cgccggaggc gtcagaaggg gagatagcgc cacggctgct gttagatggc
    18961 gagccgttgg cgttaagtgg tgacaagtgg cggatttcac catggttatt agtaaccgat
    19021 gatacggcaa ccatcaccgc gtttttgcag atgattcagg aagggaaggc gatcacctta
    19081 cgcgacggca atcagaccat ttcgctgagt ggcttaaaag cggcgttgtt gtttattgat
    19141 gctcagcaaa agcgcgttgg cagtgaaacc gcgtggatca agaaagggga cgaaccgccg
    19201 ctcagcgtac cgcccgcgcc tgcgctgaaa gaggtcgcgg tggttaaccc aacgccgacg
    19261 ccactctcac tcgaagaacg caacgatttg ctggattatg gaaactggcg gatgaatggt
    19321 ctgcgctgct cgcttgatcc attgcgtcgt gaggtgaatg tcactgcgct gactgatgat
    19381 aaagcgctga tgatgattag ctgtgaggca ggggcctata acaccattga tttggcatgg
    19441 attgtgtcgc gtaaaaatcc gctggcctcg cgcccggttc ggttgcgttt gccgttcaac
    19501 aacgggcagg agacgaatga actggaactg atgaacgcaa catttgatga gaaatcgcgt
    19561 gaactggtga ccttagcgaa agggcgcgga ttaagcgatt gtggcattca ggcgcgctgg
    19621 cgctttgacg gtcagcgttt tcgcctggtg cgttacgccg cagaacccac ctgcgataac
    19681 tggcatgggc cagacgcctg gcccacgttg tggatcaccc gttaaacaaa atggcgggga
    19741 catgtaggcc ggataagacg ctgtaggccg gataagacgc gtcagagtcg catccggcaa
    19801 tcagcgtccg gcaatcagca tccggcgatc accatcaggc acctttcact cccagcacct
    19861 tatgcgcttt tgccacaata ttctcggcgg taaagccaaa gaacgggaac agcttatccg
    19921 ccggagcaga ttccccataa cctgtcatcc caacaatcgc ccctttcaaa ccaacatact
    19981 tgtaccagta atcggcaata cctgcttcca ccgccacgcg agccgcaacg ttagaaggca
    20041 acaccgactc ccgatattcc tcatcctggg cgtcgaaaat atcagtcgag ggcagggaaa
    20101 ctacgcgtac attgcgacct tctcccgcta atttctctgc cgcttgcagg gggatttcca
    20161 tctctgaacc ggtggcaatc aaaataatat ctggcttacc gccgctgtct ttcagcacat
    20221 aaccgccacg ggcaatctct tttacctgat ccggcgtacg ttccacctgg gccagattct
    20281 gccttgagag gatcagtgcc gtcggtccgt tgtggcgctc aaccgccagc ttccagccca
    20341 ccgccgcttc cacctgatcg cacggtcgcc aggtgctgaa atttggcgtt aagcgcaggc
    20401 tggccagttg ctcaacagcc tggtgcgtcg gaccatcttc gcccaggcca attgagtcgt
    20461 gggtataaac cataatctgc cgcgctttca tcagtgccgc catccgcgcg gcgttacggg
    20521 cgtattcaac aaacatcagg aacgtggcgg tatacggcac aaagccgccg tggtgcgcga
    20581 tgccgttggc tatagcggtc atgccaaatt cacgcacccc gtagtgaatg tagttgcccg
    20641 ccggatcttc cttcagcgaa acagaacctt tccagatggt caggttgctg gagccagatc
    20701 cgccgaaccg ccgagcaact caggcagcat cggc
//
LOCUS       DAJVSY010000065        20714 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.065, whole genome shotgun sequence.
ACCESSION   DAJVSY010000065 DAJVSY010000000
VERSION     DAJVSY010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20714)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20714)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20714
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.065"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(73..4533)
                     /gene="mukB"
                     /locus_tag="OQQ19_002143"
     CDS             complement(73..4533)
                     /gene="mukB"
                     /locus_tag="OQQ19_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukB"
                     /protein_id="HCS1803767.1"
                     /translation="MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTM
                     AAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVV
                     GVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAM
                     EGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLR
                     DYLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMR
                     HANERRVHLDKALEFRRELHTSRQQLAAEQYKHVDMARELAEHNGAEGDLEADYQAAS
                     DHLNLVQTALRQQEKIERYEADLDELQIRLEEQNEVVAEAIERQEENEARAEAAELEV
                     DELKSQLADYQQALDVQQTRAIQYNQAIAALNRAKELCHLPDLTADSAAEWLETFQAK
                     ELEATEKMLSLEQKMSMAQTAHSQFEQAYQLVVAINGPLARNEAWDVARELLREGVDQ
                     RHLAEQVQPLRMRLSELEQRLREQQEAERLLADFCKRQGKNFDIDELEALHQELEARI
                     ASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTS
                     SQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAERFG
                     GVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTEHLDGLTDCPEDLYLIEGD
                     PQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGRAARESRIESLHAEREVLS
                     ERFATLSFDVQKTQRLHQAFSRFIGSHLAVVFESDPEAEIRQLNSRRVELERALSNHE
                     NDNQQQRIQFEQAKEGVTALNRILPRLNLLADDSLADRVDEIRERLDEAQEAARFVQQ
                     FGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAFALTEVVQRRAHFSY
                     SDSAEMLSGNSDLNEKLRERLEQAEAERTRAREALRGHAAQLSQYNQVLASLKSSYDT
                     KKELLNDLQRELQDIGVCADSGAEERARIRRDELHAQLSNNRSRRNQLEKALTFCEAE
                     MDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAYLSADDL
                     RSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAAYQHLRERIRQDIIR
                     TDDPVEAIEQMEIELSRLTEELTSREQKLVISSRSVANIIRKTIQREQNRIRMLNQGL
                     QNVSFGQVNSVRLNVNVRETHAMLLDVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLN
                     PQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRAESGALSTGEAIGTGMSIL
                     VMVVQSWEDESRRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPE
                     NISPEKGTTYKLVRKVFQNTEHVHVVGLRGFAPQLPETLPGTDEAPSQAS"
     gene            complement(4533..5237)
                     /gene="mukE"
                     /locus_tag="OQQ19_002144"
     CDS             complement(4533..5237)
                     /gene="mukE"
                     /locus_tag="OQQ19_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415443.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukE"
                     /protein_id="HCS1803768.1"
                     /translation="MSSTNIEQVMPVKLAQALANPLFPALDSALRSGRHIGLDELDNH
                     AFLMDFQEYLEEFYARYNVELIRAPEGFFYLRPRSTTLIPRSVLSELDMMVGKILCYL
                     YLSPERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLN
                     RLRRLGMVWFMGHDSSKFRITESVFRFGADVRAGDDPREAQRRLIRDGEAMPIENHLQ
                     LNDETEENQPDSGEEE"
     gene            complement(5218..6540)
                     /gene="mukF"
                     /locus_tag="OQQ19_002145"
     CDS             complement(5218..6540)
                     /gene="mukF"
                     /locus_tag="OQQ19_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukF"
                     /protein_id="HCS1803769.1"
                     /translation="MSEFSQTVPELVAWARKNDFSISLQVDRLSFLLAVATLNGERLD
                     GEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYR
                     LTPLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPL
                     KYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL
                     QDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIG
                     YDRHVHKFIRTAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALR
                     DEEVTGELPEDLEYEEFNEIREQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRA
                     RHFDVARIVIDQAVRLGVAQADFTGLPAKWQPINDYGAKVQAHVIDKY"
     gene            complement(6537..7322)
                     /gene="cmoM"
                     /locus_tag="OQQ19_002146"
     CDS             complement(6537..7322)
                     /gene="cmoM"
                     /locus_tag="OQQ19_002146"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine 5-oxyacetic acid(34)
                     methyltransferase CmoM"
                     /protein_id="HCS1803770.1"
                     /translation="MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQ
                     KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAA
                     QDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNM
                     VAGNFDYVQAGMPKKKKRTLSPDYPRDPAQVYLWLEEAGWQIMGKTGVRVFHDYLREK
                     HQQRDCYEALLELETRYCRQEPYITLGRYIHVTARKPQSKDKV"
     gene            7458..8237
                     /gene="elyC"
                     /locus_tag="OQQ19_002147"
     CDS             7458..8237
                     /gene="elyC"
                     /locus_tag="OQQ19_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706838.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope biogenesis factor ElyC"
                     /protein_id="HCS1803771.1"
                     /translation="MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTAKIFIS
                     IGWLALLLLSLQPVADRLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLI
                     NNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLD
                     LPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPL
                     NPWERAIPSPVWLMHSDRVGYETLGRIWQWLKGPSGEPRQE"
     gene            complement(8214..9107)
                     /locus_tag="OQQ19_002148"
     CDS             complement(8214..9107)
                     /locus_tag="OQQ19_002148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbJ family phosphotransferase"
                     /protein_id="HCS1803772.1"
                     /translation="MEQLRAELSHLLGEKLSRIECVNEKADTALWALYDSQGNPMPLM
                     ARSFSTPGKARQLAWKTTMLARSGTVRMPTIYGVMTHEEHPGPDVLLLERMRGVSVEA
                     PARTPERWEQLKDQIVEALLAWHRQDSRGCVGAVDNTQENFWPSWYRQHVEVLWTTLN
                     QFNNTGLTMQDKRILFRTRECLPALFEGFNDNCVLIHGNFCLRSMLKDSRSDQLLAMV
                     GPGLMLWAPREYELFRLMDNSLAEDLLWSYLQRAPVAESFIWRRWLYVLWDEVAQLVN
                     TGRFSRRNFDLASKSLLPWLA"
     gene            complement(9261..10007)
                     /gene="kdsB"
                     /locus_tag="OQQ19_002149"
     CDS             complement(9261..10007)
                     /gene="kdsB"
                     /locus_tag="OQQ19_002149"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HCS1803773.1"
                     /translation="MSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAER
                     IIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEP
                     MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATI
                     PWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQASPLEHIEMLEQLRVLWYG
                     EKIHVAVAQEVPGTGVDTPEDLERVRAEMR"
     gene            complement(10004..10186)
                     /gene="ycaR"
                     /locus_tag="OQQ19_002150"
     CDS             complement(10004..10186)
                     /gene="ycaR"
                     /locus_tag="OQQ19_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YcaR"
                     /protein_id="HCS1803774.1"
                     /translation="MDHRLLEIIACPVCNGKLWYNQEKQELICKLDNLAFPLRDGIPV
                     LLETEARVLTADESKS"
     gene            complement(10238..11470)
                     /locus_tag="OQQ19_002151"
     CDS             complement(10238..11470)
                     /locus_tag="OQQ19_002151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaQ family DNA glycosylase"
                     /protein_id="HCS1803775.1"
                     /translation="MSLPHLSLADARNLHLAAQGLLNKPRRRASLEDIPATISRMSLL
                     QIDTINIVARSPYLVLFSRLGNYPAQWLDESLARGELMEYWAHEACFMPRSDFRLIRH
                     RMLAPEKMGWKYKDAWMQEHEAEIAQLIQHIHDKGPVRSADFEHPRKGASGWWEWKPH
                     KRHLEGLFTAGKVMVIERRNFQRVYDLTHRVMPDWDDERDLVSQTEAEIIMLDNSARS
                     LGIFREQWLADYYRLKRPALAAWREARAEQQQIIAVHVEKLGNLWLHADLLPLLERAL
                     AGKLTATHSAVLSPFDPVVWDRKRAEQLFDFSYRLECYTPAPKRQYGYFVLPLLHRGQ
                     LVGRMDAKMHRQTGILEVISLWLQEGIKPTTMLQKGLRQVITDFASWQQATRVTLGRC
                     PQGLFTDCRTGWEIDPVA"
     gene            complement(11507..12493)
                     /gene="lpxK"
                     /locus_tag="OQQ19_002152"
     CDS             complement(11507..12493)
                     /gene="lpxK"
                     /locus_tag="OQQ19_002152"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HCS1803776.1"
                     /translation="MIEKIWSGESPLWRLLLPLSWLYGLVSGAIRLCYKLKLKRAWRA
                     PVPVVVVGNLTAGGNGKTPVVVWLVEQLQQRGIRVGVVSRGYGSKAESYPLLLSADTT
                     TAQAGDEPVLIYQRTDAPVAVSPVRSDAVKAILAQHPDVQIIVTDDGLQHYRLARDVE
                     IVVIDGVRRFGNGWWLPAGPMRERAGRLKSVDAVIVNGGVPRSGEIPMHLLPGQAVNL
                     RTGTRCDVAQLEHVVAMAGIGHPPRFFATLKMCGVQPEKCVPLADHQSLNHADVSALV
                     SAEQTLVMTEKDAVKCRAFAEENWWYLPVDAQLSGDEPAKLLTQLTSLASGN"
     gene            complement(12490..14238)
                     /gene="msbA"
                     /locus_tag="OQQ19_002153"
     CDS             complement(12490..14238)
                     /gene="msbA"
                     /locus_tag="OQQ19_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A ABC transporter ATP-binding
                     protein/permease MsbA"
                     /protein_id="HCS1803777.1"
                     /translation="MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFM
                     LSLLKPLLDDGFGKTDRSVLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVVMTMRR
                     RLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMM
                     FYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVL
                     IFGGQEVETKRFDKVSNRMRLQGLKMVSASSISDPIIQLIASLALAFVLYAASFPSVM
                     DSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRV
                     IERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF
                     YDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQI
                     EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT
                     SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLL
                     EHRGVYAQLHKMQFGQ"
     gene            complement(14275..16547)
                     /locus_tag="OQQ19_002154"
                     /pseudo
     CDS             complement(14275..16547)
                     /locus_tag="OQQ19_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309023.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC family protein"
     gene            complement(16754..17038)
                     /gene="ihfB"
                     /locus_tag="OQQ19_002155"
     CDS             complement(16754..17038)
                     /gene="ihfB"
                     /locus_tag="OQQ19_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006819309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HCS1803778.1"
                     /translation="MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIE
                     IRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG"
     gene            complement(17198..18871)
                     /gene="rpsA"
                     /locus_tag="OQQ19_002156"
     CDS             complement(17198..18871)
                     /gene="rpsA"
                     /locus_tag="OQQ19_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HCS1803779.1"
                     /translation="MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKS
                     ESAIPAEQFKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAY
                     EDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLD
                     QKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLL
                     HITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPE
                     GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLD
                     IDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH
                     LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKK
                     GAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGV
                     DRKNRAISLSVRAKDEADEKDAIATVNKQEDANFSNNAMAEAFKAAKGE"
     gene            complement(18982..19665)
                     /gene="cmk"
                     /locus_tag="OQQ19_002157"
     CDS             complement(18982..19665)
                     /gene="cmk"
                     /locus_tag="OQQ19_002157"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HCS1803780.1"
                     /translation="MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA
                     LAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQ
                     VATFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRML
                     QLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQ
                     YARQKLALA"
     gene            complement(19838..20601)
                     /gene="ycaL"
                     /locus_tag="OQQ19_002158"
                     /pseudo
     CDS             complement(19838..20601)
                     /gene="ycaL"
                     /locus_tag="OQQ19_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706828.2"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase YcaL"
BASE COUNT         4986 a         5723 c         5032 g         4973 t
ORIGIN      
        1 tatgtgccat ttttttagtg cagaaacgga gttttcggaa aaagaaaagg cggcattgct
       61 gccgccttaa ttttaactcg cctgagaagg cgcttcgtca gttcctggaa gcgtttcagg
      121 gagttgcggc gcaaatcctc gcaggccgac gacatgaaca tgttcggtat tctggaagac
      181 tttacgcacc agtttatagg tggtgccttt ctccgggctg atattttccg gcgctgcgat
      241 gatgagctgc atttgcaaac gctcacacaa ttcaaacagc gtggcgatag aacgagcatc
      301 cagtcgcgct gcttcatcga ggaacagcag acggcaagga gagatatctt taccgcgcag
      361 gcggcgagat tcatcttccc agctttgtac caccatcacc agaatcgaca taccggtacc
      421 aatcgcctca ccggtcgaca atgcaccaga ctctgcgcgc aaccaaccat cggaaccacg
      481 gttaacctca acttccattt ccagatagtt gcggtaatcc agcagttctt cgccaatggt
      541 ctgcggcgtg cgctgcccca tatcaatctg cggattaaga cgctgataca atttcgccaa
      601 cgcttccgag aaggtcagac ggttgctgtt aaacagatcc tgatgctgct cgtgctgttc
      661 agagagcaca tccagcagca tggcgtgcgt ttcacgcacg ttcacgttga ggcgcacgct
      721 gttcacctga ccaaacgata cgttctgcaa cccctggttg agcatacgga tacggttctg
      781 ctcgcgctga atggttttgc gaatgatgtt cgccacgctg cgggaactga tcaccagttt
      841 ctgttcacgg gaggttaatt cttcggtcag acggctaagt tcgatctcca tctgttcgat
      901 agcttccacc ggatcatcgg tacgaataat atcctgacga atacgttcac gcagatgctg
      961 ataagccgcc acgaagaact gaattttacg ctccggacgt ttcggatctt ccgacatgcg
     1021 cagcacgtcg cgcagatgtt cgttatccgc caccgccaga cgcagcgcac ccaatgcctt
     1081 atccgacata gagcgcaaat catcagcgga gagataagcc agctcacgac ggtgtaagcg
     1141 gcgctcaacg ccgttatctt tcaccatgcg catcaccgca caccagcccg ctttggcggt
     1201 cactacctgc tcgcgcatct caaagtaatc ccgctccagc ttgcgcagtt tgcgggtcag
     1261 gttgtccatc tccgcttcgc agaaggtaag cgctttttcc agttgattgc ggcgtgaacg
     1321 gttattgctc agttgcgcat gcagctcgtc acggcgaata cgcgcccgct cttctgcccc
     1381 gctatcagca cacacgccga tatcctgcaa ttcacgttgc agatcgttga gtagctcttt
     1441 tttggtgtcg taagaacttt tcagcgaagc cagcacctgg ttgtactgac tcaactgcgc
     1501 tgcgtgaccg cgcaacgctt cgcgagcacg ggtacgctcc gcttccgcct gttccagacg
     1561 ttcacgcagt ttttcgttga gatcgctgtt accgctaagc atttctgccg agtcagagta
     1621 gctaaagtgc gcacgacgct gcaccacttc cgtcagggca aacgcctgct gacgggcatc
     1681 gcgctgcatc tgttgagagt acgcgtaatc ttcttttaac tgttcgaact gttccgggtc
     1741 gctctgcaat accgaaacga tcggttccag tttcgccagt tgattgccaa actgctgaac
     1801 aaaacgcgcg gcttcctggg cttcatccag acgttcgcgg atttcatcga cgcgatccgc
     1861 caggctatca tcagccaaca ggttgagacg cggcagaatg cggttcagcg ccgtaacgcc
     1921 ctctttcgcc tgctcaaact gaatacgctg ctgctggtta tcattttcat gattacttaa
     1981 cgcccgctcc agttcgacgc gacggctgtt cagttgacgg atttctgctt ccgggtcaga
     2041 ctcaaacaca accgccagat gactgccgat aaagcggctg aacgcctgat gcagacgctg
     2101 agttttctgt acatcaaagg agagcgtggc gaagcgttcg gaaagcactt cacgctcggc
     2161 atggaggctt tcaatacggc tttcacgcgc agcacgacca aacagcggca cttccgggaa
     2221 acgtgaataa cgccactgac gatcggcgat tttcaccact accgcttttt ccagctcatc
     2281 aacgctgaac acgctgtcat cgaatgactg cggatctcct tcgatcagat agagatcttc
     2341 cgggcaatcg gtcaagccat ctaggtgttc agttacctgt gacagatctg gcaccacgat
     2401 ggcgtggcgt gacgggccat acagcgctga gaagtacggc gcatcttcca ggctaacgtc
     2461 gtcataaatt tctgacagca gcacaccacc aaaacgctcc gccagcgcgt tcagacgctg
     2521 atcttcagag ccgccaggct ggcttaaacg ttcgatctct tcatcgacgg cgtttttgcg
     2581 cgcgcccact tcatcgcgtt caacaatcgc ctctcgctca cgctccagca actgttgcag
     2641 atattcggtg acgtcctggc tggaggtaaa ctcttcgccg cactgttcgc tcaactggtt
     2701 gagactgttt tgcgctgcca gccaaaccgg cgcacgctgc atcaaactct gaatgcgaga
     2761 ctgcagctgt tcctgctcct ggcgcagtgc catgcgctct tcacgggcgt tagacacgct
     2821 atcggaaaga gaggcaatgc gtgcttccag ttcctgatgc agggcttcca gttcgtcgat
     2881 atcaaaattc ttgccctgac gtttgcagaa atctgccagc agacgctcag cttcttgctg
     2941 ctcgcgtaga cgctgttcca gttcgcttaa tcgcatccgc agcggctgaa cctgctctgc
     3001 caggtgacgc tgatcgaccc cttcgcgcaa tagttcgcga gcgacatccc acgcctcgtt
     3061 acgcgccagt gggccgttga ttgccaccac cagctgataa gcctgctcaa actggctgtg
     3121 cgcggtttgc gccatgctca ttttctgctc aagagagagc attttttcag tcgcttccag
     3181 ctctttcgcc tggaaggttt ccagccattc ggcggcgctg tcggcggtta agtccggcag
     3241 atggcacagt tctttggcac gattaagcgc agcaatcgcc tggttatact ggatcgcgcg
     3301 cgtttgctgg acgtccagcg cctgctggta gtcagcaagc tggcttttca gctcgtccac
     3361 ttccagttcg gcagcttccg cgcgagcctc gttctcttcc tggcgttcga tggcttctgc
     3421 caccacttcg ttttgctctt ccagacggat ctgcagctca tcgagatccg cttcgtagcg
     3481 ttcgatcttc tcctgctgac gcagtgcggt ttgcaccagg ttcaggtgat cgctggccgc
     3541 ctgataatcc gcttccagat cgccttcggc accgttgtgc tctgccagct cacgcgccat
     3601 atcgacgtgt ttgtactgct cagccgccag ttgctgacgc gaagtatgta actcgcgacg
     3661 aaactccagg gctttgtcga gatggacacg gcgctcgttg gcgtgacgca tgtagtccgc
     3721 cgccacgtag ttggtagctt cgctgatcag atgcttaaac aggtcacggt ccgactgggt
     3781 gacacgaatc gcttccagcg tcatgcggtt ttcacgcagc gccgcttcca tgtcctggaa
     3841 cgctttacgc acgccgctgt tttccggcaa cagatagtcg cgcagagaac gggtaatggc
     3901 actggagatc ccgccataca gcgaagcttc gatcagacga tagaatttgc tacggtcaga
     3961 tgcggagcgc agacgacgcg cgatgatgcc cagatcgaac atcagcgagt ggtaatcggt
     4021 aatggagttg aactgtttaa actgcacgcc ttccatcgcc tcgagcttgt ctttcagctc
     4081 gttaagcggc agcacgcgcg cctggcgttc gttcagggtt tcggtcacca gctgtgtcgg
     4141 ctgcaccgac atcggcagtc cctgaatggc aaatggtttg atatccactt tacgatcgcg
     4201 tccggcaacc tgttgcagac gcacaccgac caccacgcgc tggtggcgcg agttaatggt
     4261 gtcgagcatc gaataacaga cacccgcttt cagcttaccg tgcagacctt tatcgcgcga
     4321 accgctggtg gccccggctt ccgtagtgtt acggaaatgc agcagggtca ggtcggggat
     4381 cagcgccgta acgaacgccg ccatggtggt ggatttaccc gccccgttac cgccagaaag
     4441 cgtcgtgacc agctcgtcaa ggtcaaaagt tcgggcaaaa aagccgttcc agttaatcag
     4501 cgtcagtgag cgaaatttac cgcgttcaat cattattctt cctctccgct atctggctga
     4561 ttctcttcgg tttcatcgtt gagttgcaga tgattttcaa tcggcattgc ttcgccatca
     4621 cgaatcaggc gacgctgtgc ttcacgggga tcgtcgccag cacgcacatc ggctccgaag
     4681 cggaacaccg attcggtaat gcgaaacttg ctgctgtcgt ggcccataaa ccacaccatg
     4741 cctaaacgac gcagacggtt gagcgaagaa cgtactttct cctgcaactt ctgacggtca
     4801 acgtctgaac cggttgaacg gttgttcacc agtttcagca gttttgcttc atcggccagg
     4861 gtgagcagtt cgtcgtacag ttcctgctgg gtgaaaatcc cctcattcgc cagccgttcc
     4921 gggctgagat agagataaca gaggattttc ccgaccatca tatccagttc cgacaagacg
     4981 gaacgcggga taagagtggt ggaacgtggg cgtaaataga agaacccttc cggtgcgcga
     5041 ataagctcaa cgttataacg cgcgtaaaac tcttccagat attcctgaaa atccatcagg
     5101 aatgcatgat tatccagttc gtcgaggcca atatggcggc ctgaacgtaa ggcgctgtcc
     5161 agcgccggaa ataacggatt cgccagcgcc tgcgccagct taaccggcat cacttgttca
     5221 atatttgtcg atgacatgcg cctgtacctt ggctccgtaa tcattaatcg gctgccattt
     5281 cgctggcagt ccggtgaaat ctgcttgcgc tacgccaaga cgtaccgcct gatcaataac
     5341 aatacgcgca acgtcaaagt gacgtgcacg cggatactgt gacagatatt cgcgtaccac
     5401 cagaccaaga tccagcggca cttgtctggt tttgtacacg gcaagttgtt cttcgatgat
     5461 cgccgccagc tgttcgcgga tctcgttaaa ctcttcgtat tccagatcct caggaagttc
     5521 cccagtcact tcttcatcgc gcagtgccat ctcttcgtca cgcatatcca gcagacgatc
     5581 ggcattggca taagttagcg cccacggctc atcaaaatag gtttgtaccg actgacgtaa
     5641 ccgctgagca aagacgcggt ttttatccat atcgatcgcg gtacgaataa atttgtgtac
     5701 gtggcggtcg tagccaatcc acaagtcgat ggattgctgg ccccaactga taatacgatc
     5761 gagtttgctc tgcagatcga acaccagacg atcgacgaaa tgcagatcgt catgggtcat
     5821 cgtcgcatcc tgaatgcgca acagattagc ctgcaatttg tcgcctgccg cttccagcgt
     5881 atcctgcaat tcacgcagcg ttccggaagt ttccgaaagc aacaattcac agctggaaat
     5941 cgccgcccgc cagtctttgt tcagcaactg ggcgatatcg tccttcacct gctgctgctg
     6001 ttcgtccatc agacgttgcg tcaggtcgat actgtcgaaa atttctgcta ccgaatattt
     6061 cagtggcgca tagacattac ggtgccagtg aaattcatca ccgccctctt cggcggcatc
     6121 tgctgcgcgt ttgagctcac ccgccacaat cgacaactgc atagaaagac gcagcgtaga
     6181 aaactcgcgc tgacggatgt agtagtcagt aatgccgatg ccgagcggcg tcagacggta
     6241 aattgcgttc ccttccgcct gctcgctggt aaagcggttc agcagacgtt gacgcaccat
     6301 gtcgttgatc gcgttattgg cgcgcacgcc gatggtttcg ctggtttgct caaacgcatc
     6361 actcacatgg cggaatgcat ccaccagctc gccttcactc atctcaccat ccagacgctc
     6421 gccgttcagc gtggcaaccg ccagcagaaa agagagtcgg tctacctgca gcgagatgga
     6481 gaagtcattt tttctggccc aggcaaccag ttcggggact gtctgggaaa attcactcat
     6541 actttatcct tgctctgcgg tttgcgcgcg gtgacatgaa tataacgccc cagggtaata
     6601 tacggttcct gacggcaata acgcgtttct aattcaagta atgcttcata gcagtcgcgc
     6661 tgctggtgct tctcgcgcag ataatcatga aacacgcgaa cgcctgtctt acccataatt
     6721 tgccaaccag cttcttccag ccacagataa acctgcgccg ggtcgcgtgg ataatctggc
     6781 gaaagcgtcc gttttttctt tttcggcatt cccgcctgca cgtaatcaaa attcccggcg
     6841 accatgttat gcatcaacaa accatgcgca ttgtagaaca ttaacgacaa cacgccgcct
     6901 ggacgcaaca ctgaccacag ggtctgcaat acactgcggg gatcggccac ccactcgagc
     6961 accgcatgga acaatatcag atcaacgggc gtttccaaat gcgaagcaac atcctgagcg
     7021 gcgcaatgta taaattgcat gttgtcgctc acaccttttg cttctgccgc ctgttttgcg
     7081 cggtcgatca tctgcgcaga aagatcgcat aaaatgacct gatgcccacg ctcggccatt
     7141 ttgattgcgg tctgcccttc tccaccgcca gcatccagca cacgcagttt ttgcgggccc
     7201 atttccgcca gcacgcgatc gagatcctgc cacagaatag cctgtcgaag ctgccctttg
     7261 gtggtgccgt aaatgttgcg ggaaaacttt tccgcaatat catcaaaatt gcgatcctgc
     7321 attgctttct ccaccggttg gctaagacgt tttctgataa agacgctatt ttgtcacagc
     7381 cacggcgaga atgaacccgt ctggtgtaat atcgctggcg atcccttgct atatggttaa
     7441 aaaaggaacc agaaaggatg ctttttacac tgaaaaaagt gattggcaat atgttgctgc
     7501 cacttccgct gatgttgtta attattggcg ctggcctggc gctgctgtgg tttagccgtt
     7561 ttcaaaaaac cgcgaagatt tttattagca ttgggtggct ggcactcttg ttattgagtt
     7621 tgcaaccggt agccgaccgc ctgctgcgtc ccatcgaaag cacctatccg acatggaata
     7681 attcgcaaaa agtggactat atcgtggtgc tcggaggtgg ttatacctgg aacccgcagt
     7741 gggcaccgag ctctaattta atcaataaca gtctgccacg cctgaatgaa ggtattcgct
     7801 tatggcgcga aaatccggga tcaaaactga tcttcacggg aggcgtagca aaaaccaata
     7861 cggtgagtac agcggaagta ggtgccagag ttgcgcaatc gctgggcgtg ccgcgcgagc
     7921 aaattatcac cctggatttg ccaaaagata ccgaagaaga agctgcggca gtgaaacagg
     7981 cgattggtga cgcccctttc ctgctggtga cctccgcatc acatctgccg cgggcgatga
     8041 tcttttttca gcaggaaggg ttaaatcctc taccagcccc ggcgaatcag ttggccatcg
     8101 actcgccgct taatccgtgg gaacgggcaa tcccttctcc ggtctggctg atgcatagcg
     8161 atcgtgttgg ctatgaaacg cttggccgca tctggcagtg gctgaaaggt ccgtcaggcg
     8221 agccacggca agagtgattt tgatgccaga tcgaagttgc gccgactaaa tcgtccggta
     8281 ttaaccagtt gcgcaacttc atcccataac acatacaacc aacgccgcca gatgaacgac
     8341 tccgccactg gcgcgcgttg caggtaactc cagagcaaat cttccgccag agaattatcc
     8401 attagtcgga acagttcgta ttctcgcggt gcccaaagca ttagtcccgg cccgaccatc
     8461 gccagtaact gatcgctgcg cgaatctttc agcatgctgc gtaaacagaa gttaccgtga
     8521 atcaacacac aattgtcgtt aaagccttca aataatgccg ggagacattc gcgagtgcga
     8581 aacaggatcc gcttatcctg catcgtcaga ccggtgttat tgaactgatt gagcgtggtc
     8641 catagcactt caacatgttg ccggtaccat gagggccaga aattttcctg agtattgtcg
     8701 accgcgccga cgcaaccgcg actgtcctga cggtgccatg ccagtaaggc ttcaacgatt
     8761 tggtctttga gctgttccca gcgttctggt gttcgggctg gtgcctccac cgaaacacca
     8821 cgcatccgct ccagtagcag gacatcaggg ccggggtgtt cttcatgcgt catcacacca
     8881 taaatagtcg gcatacggac agtcccactt cttgccagca tggtggtttt ccatgccagt
     8941 tgtcgggctt ttccgggcgt actaaagctt cttgccatta acggcattgg gtttccctgg
     9001 ctgtcataca aagcccacaa cgccgtatcc gctttttcat tgacgcactc aatacgactg
     9061 agtttttcgc ccagtaaatg gcttaattcg gcacgcagct gttccattca gattaccctc
     9121 ataaaagcta ctgctttcat aatgagcgcc aatataaaag atgtcacctg aatgagatca
     9181 attgttgaaa agaaaaattg aggaaaatcg taacggtacg acactcctcc caaaattggc
     9241 tgaagtgtcg tgaagtgaaa ttagcgcatt tcagcgcgaa cgcgctcaag atcttcaggg
     9301 gtatccacac ctgtgccagg aacttcctga gcaacagcaa catggatttt ttcgccgtac
     9361 cacagaacac gaagctgctc taacatttcg atgtgttcta acggacttgc ctgccagttg
     9421 acgtaacgac ggataaagcc tgcacggtag ccataaatgc caagatgacg caggaagtta
     9481 tcgccaacgg tttcaaggcc ttctgcaaaa cgatcacgat cccaaggaat ggtggcgcgt
     9541 gagaagtaca gtgcataccc ttcagcgtcg agaaccactt tcaccgcatt cgggttaaac
     9601 gcttcttccg cattgtggat tggcaccgcc agagtcgcca tacccacctg acgctgagcg
     9661 aggttatcag caacctgacg aatgattgtc gcagggatca tcggttcatc accctgcaca
     9721 ttaacgatca ccgtgtcgtc gctgaatgcg catttttcga caacttccgc cagacgttct
     9781 gttcctgact gatgatcggc gcgcgtcata catacttcac cgccagcggc ttcaacggcg
     9841 cgggcaacat cctcatgatc ggttgccacg atgatgcgct cggcacctga ttcacgcgcg
     9901 cgttcaagaa catgaacaat catgggtttg ccgttaatat caaccaatgg tttaccgggc
     9961 agacgcgtgg acgcgtagcg cgcgggaata atgaccacaa aactcatgat ttactctcat
    10021 cagcagtcag cacgcgggct tccgtttcca gcaacactgg aatgccatcg cggagcggga
    10081 aagccaggtt atccagtttg caaataagct cttgtttttc ctggttatac caaagttttc
    10141 cgttgcaaac cgggcaggca atgatttcaa gcaaacgatg atccatagtt cctccagatg
    10201 gatcgggtta tgaatgcata aatcttatca taatcattta tgcgacgggg tctatttccc
    10261 agccagtgcg gcaatcagta aagagacctt gcgggcagcg tcctaatgtc acccgcgttg
    10321 cctgctgcca gctcgcgaaa tcagtaatca cctgacgtaa ccctttttgc agcattgtcg
    10381 ttggtttaat gccttcctgt aaccacagag agataacttc aaggatgcct gtctggcgat
    10441 gcattttggc atccattcgc ccaactaatt gcccacgatg taataatggc agaacaaaat
    10501 agccatactg gcgtttcggc gctggggtat agcactccag ccggtagcta aaatcaaaaa
    10561 gctgctctgc gcgtttgcga tcccagacaa caggatcaaa aggcgaaagt accgcgctgt
    10621 gcgttgcagt gagctttccg gccagcgcac gctcgagtag cggcagcaaa tcagcatgca
    10681 gccaaagatt gcccaatttt tcaacatgca cagcaatgat ttgctgctgt tcagccctcg
    10741 cttcgcgcca cgccgccagt gccggacgtt tcagccgata gtaatctgcc agccactgtt
    10801 cgcggaatat tcccaggcta cgcgcactgt tatccagcat gatgatttct gcttctgttt
    10861 gcgaaacgag atcgcgctca tcatcccagt caggcatgac acggtgggtt aaatcataaa
    10921 cgcgctggaa gttgcgccgt tcaatcacca tcacctttcc ggcagtaaat aaaccttcca
    10981 gatgccgttt atgcggtttc cattcccacc agccgcttgc acctttacga ggatgctcaa
    11041 aatcggctga acgtaccggc cccttatcat gaatatgctg aattaactgt gcaatttccg
    11101 cctcatgttc ctgcatccag gcgtctttgt atttccagcc cattttttca ggtgccagca
    11161 tgcggtggcg aataagacga aagtcgctac gcggcataaa gcaggcttca tgcgcccagt
    11221 attccattaa ttcgccacgc gccagagact catccagcca ctgggcagga taatttccca
    11281 gacgactgaa aagcaccaga tatggactac gggcaacaat attgatggta tcgatttgca
    11341 gcaaggacat gcgggagatc gttgccggaa tatcctccaa cgacgctcga cggcggggtt
    11401 tgtttaacag gccttgtgcg gcaaggtgaa gattacgcgc atcagcaagg gagaggtgcg
    11461 gcagcgacat tcatgactcc atcaatcgaa cgctgccgcg gcgtaactag ttgccagaag
    11521 ccagcgaggt tagttgcgta agcagtttcg ctggttcatc acctgaaagc tgtgcgtcta
    11581 caggcaaata ccaccaattt tcttctgcaa aggcccggca tttcaccgca tctttttcag
    11641 tcattaccag cgtttgctcg gcgcttacca acgcactgac atccgcatgg ttcaaagact
    11701 gatgatcggc cagcggtaca catttttccg gttgtacgcc acacatcttc agcgtggcaa
    11761 aaaagcgcgg cggatgccca atccccgcca tcgccactac atgttcaagc tgagcaacgt
    11821 cacaacgcgt accggtacgt aaattcaccg cctgacccgg cagcagatgc atgggaattt
    11881 caccgctgcg agggacaccg ccgttgacga ttaccgcatc aaccgacttt aagcgccccg
    11941 ctcgctcacg cattggcccc gccggcaacc accagccatt gccaaagcga cgcacaccat
    12001 caataacgac aatttccaca tcacgcgcca gacggtaatg ctgtaaaccg tcgtcggtta
    12061 cgatgatctg cacatcaggg tgttgcgcca gaatggcttt taccgcatca gaacgaacgg
    12121 gagaaaccgc aacaggcgca tcagtgcgtt gataaatcaa cacaggttca tcacccgcct
    12181 gtgctgttgt ggtatctgcc gacaataaca gcggataaga ttcagcctta ctaccatatc
    12241 cccgcgatac gacccccacg cgaataccgc gctgttgcaa ctgttccacc agccagacaa
    12301 cgaccggggt ttttccgttg ccgcctgcgg tgagattacc aaccacgaca accggtacgg
    12361 gggcacgcca ggcgcgcttc agttttagtt tatagcaaag acggatcgcg ccactcacca
    12421 ggccatacaa ccaggagagt ggcagcaata gccgccacaa aggggattca ccagaccaga
    12481 ttttttcgat cattggccaa actgcatttt gtgaagttgc gcgtaaacgc cgcggtgctc
    12541 aagcaaatcg ttatgcgtac cgcgttccac aatgacacca tcctcgacga ccacgatttc
    12601 gtctgccttt tcaatggtag acaagcggtg ggcaatcacc agagaggtac ggtttttctg
    12661 caactcatcc agtgccgcct gaatcgcacg ttcggattcg gtatccagag ccgaggtagc
    12721 ttcatccaga atcagaatcg ggctatcacg cagcaaggct cgagcgatag caatacgctg
    12781 acgctgaccg ccagagagca gcacgccgtt ttcaccaatc actgtatcga gaccgttatc
    12841 catcttattg atgaagtcca tggcgtaggc catacgcgcc gcttcttcaa tttgctcacg
    12901 gctgtactgt tcagtccgtg cgtaagcaat gttgttagca accgtatcgt taaacagatg
    12961 gacattctgc gacaccagag caacctggtt acgtaacgac gccagggtat actcgcgcag
    13021 atcgtgacca tccatcagga tttcgccttc atcaatatcg taaaaacgag tgatcaggct
    13081 ggcgatggtt gatttacctg aaccagagcg tccaaccaga gcaaccgtct tccctgccgg
    13141 aattttcagg ttgatgttac gcaatgcagg tacgtcacgt cccggataag taaaggtgac
    13201 attgcggaat tccacgtcgc cagtcgcacg ctcgatcacg cgcttacctt cgtctttctc
    13261 ctgctcactg tccagaatgg taaacagcgt ctgacaagcc gccataccgc gctggaactg
    13321 ggcgttaacg ttggtcagtg atttcagcgg acgcatcagt gcaatcattg aagagaaaac
    13381 aacggtaatc gtaccagcag tcaggctatc catgacactt gggaagctcg ccgcatacag
    13441 aacaaacgcc agcgccaaag aggcgatcag ctgaatgatc ggatcagaga tggaagaggc
    13501 tgaaaccatt ttcagcccct gaagacgcat tcggttgctg actttatcaa agcgtttcgt
    13561 ttccacttcc tgaccaccga aaatcaatac ttctttgtgg cccttcagca tttgttcggc
    13621 gctggtggtc acctgcccca tggtgttctg catgttttta ctgatgttgc gaaaacgctt
    13681 cgatactacg cgaatcgcaa tcgaaacaat cggtgccagc acaatcaaaa tgatcgacag
    13741 ttgccaactg taatagaaca tcatgatgaa caggccgatg attgacgcac cttcacgcac
    13801 aaccgttatc agtgcgccgg aagaagaaga agcaacctgt tcggaatcgt aggtaatacg
    13861 tgacaacagc gtccccgttg actgtttgtc aaaaaatgaa accggcattc ccatcatgtg
    13921 accaaacagg cggcgacgca tggtcattac cacctttcct gatacccagg agatacagta
    13981 gctggagaca tagctggtga taccacgtaa aatcatcagc ccgatcacca ccagcggcat
    14041 ccacaccagc acggagcgat ctgttttacc aaagccatca tcaagaagtg gcttaaggag
    14101 cgataacatg aaggtatcgc tggctgcgtt gaggattaac gctacgcccg ccacgatcag
    14161 acccgcttta aaaggcgcaa tggttggcca cagtcggcgg aacgtctgcc acgtagagag
    14221 atctttgtcg ttatgcattc aaaaaaccag catttgttga aatagccgca tattctaccc
    14281 gttatccact ggcacgccaa accactgatg ataccaacga ggtaaaattt gctctctgag
    14341 gctgctaatc cgccagcctt gcgctgaaaa attgaccgtc acttgaccct gatgtggagt
    14401 atcaagccat tgatatcctt gctgttgata gcgatgctta actttattag agggcaatcg
    14461 ccatgcgtta tagcgttata gcgcgatgcc gatgcgagtg ccacttttcc attcactcgc
    14521 tgaattaatg gcaacgatga tgaggtatta ctgccatggt gaggtacctg aagcaatgtt
    14581 gtctgcactt gctgccagta acggcttagc atcttttgtt cagcggggac ttcaatatca
    14641 ccggttagaa gaatgctatt cgtcccgtca taaaccttaa ccacacagga atggttattt
    14701 cctttatcgt tgctagcttg taaaggccag tgcacgctga aacgcaatcc ttgccattgc
    14761 cacgcttcgc cacgcacaca gggctgatga tgttcccagt ttaacggact tctgatccat
    14821 aacatcggcc atgtgtgcaa tattgagtcc agccctcccc ggtgatccag atgttcatga
    14881 ctcagaataa cgccttccgg ttcaagatta tgccagtgga gccaggggat aatcagttgt
    14941 tgcccactat ccccttcggg ccaggccagt cctgtgtcat agagaatcgc tttgccgttt
    15001 ctggctatca ccattgccag cccttgcccg acatcaagca tgtacacctg ccactcgtca
    15061 ggtcgaggtt tttgccacag cggccagcac atcagcaagc ctacagccac acacattgct
    15121 ggcaacgttc gccaggcgtt taatcgccat accaccagta agaaccatgg ggaaaatgat
    15181 agccattgcc aacgttcagc aatgttgatc cacccttctt gcaaactctt taacccccag
    15241 aaaagtaaag ccaaagaccg gtcggcaaga aaccataacc cttgctccag gattaacggc
    15301 ccgcttaaat gcacaaccat cgcggcgagg atcaacggaa ccgtgataaa tgtcaccaag
    15361 ggaattgcta atagatttgc aataaacgag gtcagactaa tgccatgaaa tatgacgatt
    15421 tgcacaggca taagcaggag tgtgattccc agttgcaaat gaatgaggga aacaactgca
    15481 cgcaataccg gcggcagttg ccactcagga cagggaaacc actggtacca aaaaatcagt
    15541 gccgcgaccg cagcggcaga gagccataaa ctttgcgaga gaatggcaac aggatccatc
    15601 agcaaaattg ccgccagaca acatatccat acatcccagc cactccactg tcgcccactt
    15661 aacttaagca ttccccacgt agcaagcgcc accacggtac gcaatgcagg aggttgcatt
    15721 cccgtcaacc aggcataaaa agcagcacag cagattccac caattaatgg catttgccag
    15781 tggatccagc gcccaggcag aaaaacttgc ccaccgcgaa tgagtccggc agccagcaac
    15841 gccgcaaaag cgatgtgcaa tcccgatatc gccattaaat gcgccgttcc agtatcacgc
    15901 atgatatttt tgatttcttt ggggacggat aaccgttccc ccatacctaa accaagaata
    15961 accgcattcc acatataggg ttgcagcgtt gtttgtagtg acgccagata ctgtgcacgc
    16021 aggctacaat tcggttcaat gacacttgcc tgcagaaagc ggccgatgag cggctgatgc
    16081 tgggcaatgg cataacgctg gctatcaaag ccgccatcat taagttggcc atgaactgca
    16141 cgaactttga gtttcattga ccattgttgt ccagcacaaa ccgcttgcgg aagatattcg
    16201 ccatacagca caagacctgg cgcagggaat atacgtcgac cttgtagatg agtaatttga
    16261 ccgtaatgag tggtcatgcc gtcagttgca gtgatctcaa caattgcatc ctgcgtcgcg
    16321 ccagttaagg tttctcctgc ccacaaaatt tgctttgctg ataatatgcc ccaaacgaaa
    16381 aacagcaacg tcagcgcgat ataacggacg gttttaacag ggataaatgc cagtacgcag
    16441 gcgaagagag tcagaaacgc aagggttaat gtcccaggca attggggcaa aatcagcaac
    16501 ggaaaaattc cgcaaattat gcatacgccg actgtcgtta ttttcatgca cccctccctg
    16561 tttatggaaa gtgtgcaact ttgttgagcg gttgtctggt gggaattttg cgttccccga
    16621 ggcacattca gaagaattta acgaaagggt gaaaactgct caaaactctg cgaggcagct
    16681 tccagttcct gattagagaa atgaaaaaag cacccgacag gtgcttttct cgcgttcaag
    16741 tttgagtaaa aacttaaccg taaatattgg cgcgatcgcg cagttcttta ccaggtttaa
    16801 agtgaggaac gtattttcct tccagttcta ctttatcgcc agtcttcgga ttacgtccgg
    16861 tacgtggtgc gcggtagtgc aaagagaaac tgccgaaacc gcggatttca atacgctcgc
    16921 cctgcgcaag agtcgaggcc atatgctcca gcatctcttt tactgcatct tcaaccgtct
    16981 tggcgggaat gtgcgattgc tgggtggcaa gtctttctat caattctgac ttggtcatga
    17041 ttcctccggt tccttaaagg caaattaagc ggctgctgtt gctgcattga ttaagggcgg
    17101 ccgtagccgc ccttagtgct tgattacagg acgaaacctg caatctgtca agtaaactca
    17161 acaaacttcg gaataaaaat cccgaagagt cagagaatta ctcgccttta gctgctttga
    17221 aagcttcagc cattgcgttg ttggagaagt ttgcatcttc ctgtttgtta acagttgcga
    17281 ttgcatcttt ctcgtcagct tcgtctttcg cacgaacaga caggctgatt gcgcggtttt
    17341 tacgatcaac gccggtgaat ttagcttcaa cttcgtcgcc aacgctcaga accagggtag
    17401 cgtcttcaac gcggtcacgg gatgcttcag aagcacgcag gtaaccttca acgccgtcag
    17461 ccagttctac ggttgcgcct ttagcgtcaa ctgcagttac tttaccggtt acgatagcgc
    17521 ctttcttgtt cagagcaacc cagttgttga acggatcttc tgcgagctgt ttaacgccca
    17581 aggagatacg ttcacgttct gcgtcaacct gcagaacaac tgcagcgatt tcgtcgcctt
    17641 ttttgtattc acgaactgct tcttcgcctg caacgttcca ggagatgtca gacaggtgaa
    17701 ccaggccgtc gatgccgccg tctaggccga tgaagatacc gaagtcagtg atagacttga
    17761 ttttaccttc aacacggtcg cccttgttgt gggtttccgc gaactgctgc cacgggttag
    17821 ctttgcactg tttcagaccc agggagatac gacgacgttc ttcgtcgata tccagaacca
    17881 taacttccac tacatctcca acgttaacaa ctttggacgg gtggatgttt ttgttggtcc
    17941 aatccatttc ggaaacgtgt accaggcctt caacgccttc ttcgatttca acgaagcagc
    18001 cgtagtcggt caggttggtc acgcgaccag tcagtttggt accttccgga taacgtttag
    18061 cgatagctac ccacggatct tcgcccaact gtttcaggcc cagggataca cgggtacgtt
    18121 cgcggtcgaa cttcagcact ttaacagtga tttcgtcgcc cacgttgacg atttcgctcg
    18181 gatgcttaac gcgtttccag gccatgtcag tgatgtgcag caggccgtca acgccgccca
    18241 gatcaacgaa tgcaccgtag tcagtgaggt tcttaacgat acctttaact tccatgcctt
    18301 cctgcaggtt ttccagcagc tgatcgcgct ctgcgctgtt ttcggattcg ataacggcac
    18361 gacgagaaac aacaacgttg ttgcgcttct gatccagctt gattacttta aattcaagct
    18421 ctttgccttc caggtgcaga gtgtcacgca ccggacgaac gtctaccaga gaacctggca
    18481 ggaacgcacg aataccgttc agctcaacag tgaagccgcc cttaactttg ccgttgataa
    18541 caccggtaac agtttcagca tcttcgtaag ctttttccag cgtgatccag gcttcgtgac
    18601 gtttagcttt ctcacgggac agcagagttt caccgaagcc gtcttctact gcgtccagag
    18661 caacgtcaac ttcgtcacct acctggattt ccagctcgcc ctgggcgttt ttgaactgct
    18721 cagccgggat ggcggactca gatttcagac cagcgtcaac cagtactacg tctttgtcga
    18781 tagcaacaac aacgccacga acgatagaac ccgggcgggt ttcgatttct tttaaggact
    18841 cttcaaagag ttgagcaaaa gattcagtca tgtttaatct tcaggtttat atttaacgtc
    18901 cacctggctc catgccggat ggggttgttt aacatacccg ctgtcattcc attgcaacgg
    18961 gggtactgca aattcggtcg cttatgcgag agccaatttc tggcgcgcgt attgtagcgc
    19021 tttttcaatc acttgctcaa tgcttaaggt ggtggaatcc aacactaaag catcggctgc
    19081 cggaaccagt ggcgctaccg ctcggttacg atcgcggtcg tcgcgttctt tgatctcggc
    19141 caaaaggcgc tcaaagttaa cactaaagcc cttctcctgc aactgtagca tgcggcgatg
    19201 cgcacgttct tccgaggagg cgtcaaggaa aattttcact ggtgcatcag ggaataccac
    19261 cgttcccatg tcgcggccat cggcaatcag acctggtaat tcgcgaaacg cgcgttggcg
    19321 acgcaataat gcttcacgaa cgcgtgggaa tgtcgcgact tgtgaagccg cattcgccac
    19381 ttcctgagta cgaatttcgc cgctgacatc ttccccttcg aggatcactt ccagattgcc
    19441 attggttgac acaaaacgta catccagatg ggatgccagc ggtaccagcg catcttctga
    19501 cgcaacatca acatggtgat gtaatgccgc caatgccagt acgcgataaa ttgcacccga
    19561 atccagcaga tgccattgca atgcttccgc catagcctta cacaaggtgc ctttccctgc
    19621 accgcttggg ccatcaatgg taataaccgg ggcaattgcc gtcatcttta tctccttaaa
    19681 acaggcgtac cgttaacata accgcgcgca ttatacgcgc cgacgccaca aatcgttaac
    19741 gttgtgtgca aaaaccagtt ttgtctgtat tcagatgggg atttattgcg caattatagc
    19801 gggctggcag aagaccagcc cgaaagatga caatgattta cttaccagag gcgatacgat
    19861 cacggatgtg ttgcgcacgc tctgttgatg gtgggtgaga gtcaaacatg gactgggtgc
    19921 gaccgccatc cagactagcc agtttttcaa agctgccaac cagcccctag gtgctgatgc
    19981 cacgtttctt caacagatca aaggagaaat catctgcttc ggactcttta tcacgggagt
    20041 atttagcatt aatagcgcct tctgcgatat cacccaattg tgagcgggaa agctgggaag
    20101 ccacaccgct ggtagctgaa atggcatcgc gtgcggcaac gatcgcataa gaaactttca
    20161 tttcagccag cgagtgaccc aacgcgacgt ggcccagttc atggcccaga acaccttcaa
    20221 tttcgttgtc attcatcatg tccatcaggc cactgtagac acggacacag ccgttcgcca
    20281 tcgcccatgc gttgacgtcg ctggtcatat aaacctatag ttgaccggcg tgccattaat
    20341 attgttaccc aatgctttgg cgatttttgc cagacgttta ccgtacttgc tggatttact
    20401 tgcgacttga ttgccgctgt ccatttcggc acagccctga ttggcaatcg cttttgcatc
    20461 ggcatcgctt aatgttgctg ctttataggc atttaaaccg gagctgatag ccatattggt
    20521 atcaataccg tgggtatttt gacaccctgt cagtaatgct gcagaggtcg caatcgccag
    20581 cagtaattta gtattcttca tgtgaatcat ccgttgatta atcatatata aacattatgt
    20641 atcaacaact tacattgaca agcgacgcta ccattaatca aaatgactca caaggtccga
    20701 aaaaaaacgc cgac
//
LOCUS       DAJVSY010000066        20658 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.066, whole genome shotgun sequence.
ACCESSION   DAJVSY010000066 DAJVSY010000000
VERSION     DAJVSY010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20658)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20658)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20658
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.066"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..876
                     /locus_tag="OQQ19_002159"
     CDS             <1..876
                     /locus_tag="OQQ19_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001666746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CS1-pili formation C-terminal domain-containing
                     protein"
                     /protein_id="HCS1803781.1"
                     /translation="DQTSWQLSHTFYNDSFSHKELGVTVGGLNTDTINSAVNGRWDGQ
                     YGNVYATVSDSYDRKNHDHLSAFTGTYSSTLAVSRYGVNLGASGTDDLLGAVLVDVKG
                     FSEQDEESQDLQLEARVAGSRTLQLGQSDSVLFPYPGFQSGFVEVNDSSQGNQQGTTN
                     IINGAGNRELMLLPGKLRYREVSASFNYNYIGRLLLPAAVKKFPIVGLNSAMLLVAED
                     GGFTLEINGSEKELYLLSGQQFLKCPLSVEKKRASIRYSGDVTCSVVTYSQLPELKQP
                     KLRGNVQTAQREVAP"
     gene            873..1962
                     /locus_tag="OQQ19_002160"
                     /pseudo
     CDS             873..1962
                     /locus_tag="OQQ19_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001352530.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein CblD"
     gene            complement(2050..3348)
                     /gene="exuT"
                     /locus_tag="OQQ19_002161"
     CDS             complement(2050..3348)
                     /gene="exuT"
                     /locus_tag="OQQ19_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708898.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexuronate transporter ExuT"
                     /protein_id="HCS1803782.1"
                     /translation="MRKIKGLRWYMIALVTLGTVLGYLTRNTVAAAAPTLMEELNIST
                     QQYSYIIAAYSAAYTVMQPVAGYVLDVLGTKIGYAMFAVLWAVFCGATALAGSRGGLA
                     IARGAVGAAEAAMIPAGLKASSEWFPAKERSIAVGYFNVGSSIGAMIAPPLVVWAIVM
                     HSWQMAFIISGALSFIWAMAWLIFYKHPRDQKHLTDEERDYIINGQEAQHQVSTAKKM
                     SVGQILRNRQFWGIALPRFLAEPAWGTFNAWIPLFMFKVYGFNLKEIAMFAWMPMLFA
                     DLGCILGGYLPPLFQRWFGVNLIVSRKMVVTLGAVLMIGPGMIGLFTNPYVAIMLLCI
                     GGFAHQALSGALITLSSDVFGRNEVATANGLTGMSAWLASTLFSLVVGALADTIGFSP
                     LFAVLAVFDLLGALVIWTVLQNKPAIEVAQESHNDPAPQH"
     gene            3831..5243
                     /gene="uxaC"
                     /locus_tag="OQQ19_002162"
     CDS             3831..5243
                     /gene="uxaC"
                     /locus_tag="OQQ19_002162"
                     /EC_number="5.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronate isomerase"
                     /protein_id="HCS1803783.1"
                     /translation="MTPFMTEDFLLDTEFARRLYHDYAKDQPIFDYHCHLPPQQIAED
                     YRFKNLYDIWLKGDHYKWRAMRTNGVAERLCTGDASDREKFDAWAATVPHTIGNPLYH
                     WTHLELRRPFGITGKLLSPSTADEIWNECNELLAQDNFSARGIMQQMNVKMVGTTDDP
                     IDSLEHHAEIAKDGSFTIKVLPSWRPDKAFNIEQATFNDYMAKLGEVSDTDIRRFADL
                     QTALTKRLDHFAAHGCKVSDHALDVVMFAEANEAELDSILARRLAGETLSEHEVAQFK
                     TAVLVFLGAEYARRGWVQQYHIGALRNNNLRQFKLLGPDVGFDSINDRPMAEELSKLL
                     SKQNEENLLPKTILYCLNPRDNEVLGTMIGNFQGEGMPGKMQFGSGWWFNDQKDGMER
                     QMTQLAQLGLLSRFVGMLTDSRSFLSYTRHEYFRRILCQMIGRWVEAGEAPADINLLG
                     EMVKNICFNNARDYFAIELN"
     gene            5258..6745
                     /gene="uxaA"
                     /locus_tag="OQQ19_002163"
                     /pseudo
     CDS             5258..6745
                     /gene="uxaA"
                     /locus_tag="OQQ19_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199350.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="altronate dehydratase"
     gene            6828..7380
                     /locus_tag="OQQ19_002164"
                     /pseudo
     CDS             6828..7380
                     /locus_tag="OQQ19_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311999.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YgjV family protein"
     gene            complement(7385..8629)
                     /gene="sstT"
                     /locus_tag="OQQ19_002165"
     CDS             complement(7385..8629)
                     /gene="sstT"
                     /locus_tag="OQQ19_002165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HCS1803784.1"
                     /translation="MTTQRSPGLFRRLAHGSLVKQILVGLVLGILLAWISKPAAEAVG
                     LLGTLFVGALKAVAPILVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVF
                     SFAFPSTLHLSSSAGDISPPSGIVEVMRGLVMSMVSNPIDALLKGNYIGILVWAIGLG
                     FALRHGNETTKNLVNDLSNAVTFMVKLVIRFAPIGIFGLVSSTLATTGFSTLWGYAQL
                     LVVLVGCMLLVALVVNPLLVWWKIRRNPFPLVLLCLRESGVYAFFTRSSAANIPVNMA
                     LCEKLNLDRDTYSVSIPLGATINMAGAAITITVLTLAAVNTLGIPVDLPTALLLSVVA
                     SLCACGASGVAGGSLLLIPLACNMFGISNDIAMQVVAVGFIIGVLQDSCETALNSSTD
                     VLFTAAACQAEDDRLANSALRN"
     gene            complement(9245..10210)
                     /gene="alx"
                     /locus_tag="OQQ19_002166"
     CDS             complement(9245..10210)
                     /gene="alx"
                     /locus_tag="OQQ19_002166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001098790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family membrane protein Alx"
                     /protein_id="HCS1803785.1"
                     /translation="MNTVGTPLLWGGFAVVVAIMLAIDLLLQGRRGAHAMTMKQAAAW
                     SLVWVTLSLLFNAAFWWYLVQTEGRAVADPQALAFLTGYLIEKSLAVDNVFVWLMLFS
                     YFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDWILYIFGAFLLFTGVKMAL
                     AHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYATPLMLVLILVELSDVI
                     FAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERFSMLKYGLAVILVFI
                     GIKMLIVDFYHIPIAVSLGVVFGILVMTFIINARVNYRHDKQRGE"
     gene            complement(10494..11480)
                     /locus_tag="OQQ19_002167"
     CDS             complement(10494..11480)
                     /locus_tag="OQQ19_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311996.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HCS1803786.1"
                     /translation="MIRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQAQHFAN
                     DFSVEHLFTSLEAMAESDAIDAVYIASPNALHFSQTQLFLSHKIHVICEKPLASNLAE
                     VDAAIACARENQVVLFEAFKTASLPNFHLLRQALPKVGKLRKVFFNYCQYSSRYQRYL
                     DGENPNTFNPAFSNGSIMDIGFYCLASAVALFGEPKSVQATASLLASGVDAHGVVVMD
                     YGDFSVTLLHSKVSDSVLESEIQGEAGSLVIEKLSECQKLCFVPRGSQMQDLTQPQHI
                     NTMLYEAELFATLVDEHLVDHPGLAVSRITAKLLTEIRRQTGVIFPADSVKL"
     gene            complement(11559..12242)
                     /locus_tag="OQQ19_002168"
     CDS             complement(11559..12242)
                     /locus_tag="OQQ19_002168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vancomycin high temperature exclusion protein"
                     /protein_id="HCS1803787.1"
                     /translation="MQPRLLLRICFSRRTLKIACLLLLVAGATIFIADRVMVNASKQL
                     TWSDVNAVPARNVGLLLGARPGNRYFTRRIDTAAALYHAGKVKWLLVSGDNGRKNYDE
                     ASGMQKALIAKGVPAKVIFCDYAGFSTLDSVVRAKKVFGENHITIISQEFHNQRAIWL
                     AKQYSIDAIGFNAPDLNMKHGFYTQLREKLARVSAVIDAKILHSQPKYLGPSVMIGPF
                     SEHGCPAKE"
     gene            complement(12319..12822)
                     /locus_tag="OQQ19_002169"
     CDS             complement(12319..12822)
                     /locus_tag="OQQ19_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311994.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HCS1803788.1"
                     /translation="MSNLTYLQGYPEQLLSQVRTLINEQRLGDVLAKRYPGTHDYATD
                     KALWQYTQDLKNQFLRNAPPINKVMYDNKIHVLKNALGLHTAVSRVQGGKLKAKAEIR
                     VATVFRNAPEPFLRMIVVHELAHLKEKEHNKAFYQLCCHMEPQYHQLEFDTRLWLTQL
                     SLGQDKI"
     gene            12907..14043
                     /gene="rlmG"
                     /locus_tag="OQQ19_002170"
     CDS             12907..14043
                     /gene="rlmG"
                     /locus_tag="OQQ19_002170"
                     /EC_number="2.1.1.174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (guanine(1835)-N(2))-methyltransferase
                     RlmG"
                     /protein_id="HCS1803789.1"
                     /translation="MSHLDNGFRSLTLQRFPATDDVNPLQSWEAADEYLLQQLDDTEI
                     RGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDSTAD
                     YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLG
                     PTTTTLAWKKARLINCTFNEPPLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGAR
                     FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM
                     PEALDRSEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING
                     ELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVVLKAVKLGRRR"
     gene            14328..14642
                     /gene="higB"
                     /locus_tag="OQQ19_002171"
     CDS             14328..14642
                     /gene="higB"
                     /locus_tag="OQQ19_002171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system toxin HigB"
                     /protein_id="HCS1803790.1"
                     /translation="MHLITQKALKDAAEKYPQHKTELVALGNMIAKGYFKKPESLKAV
                     FPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKCYIREVMTHKEYDFFTAVHRTKG
                     KK"
     gene            14639..15055
                     /gene="higA"
                     /locus_tag="OQQ19_002172"
     CDS             14639..15055
                     /gene="higA"
                     /locus_tag="OQQ19_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin HigA"
                     /protein_id="HCS1803791.1"
                     /translation="MIAIADILQAGEKLTAVVPFLAGIQNEEQYTQALELVDHLLLND
                     PENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGGIAVIRTLMDQYGLTLADLPEIG
                     SKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID"
     gene            complement(15100..17118)
                     /gene="fadH"
                     /locus_tag="OQQ19_002173"
     CDS             complement(15100..17118)
                     /gene="fadH"
                     /locus_tag="OQQ19_002173"
                     /EC_number="1.3.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 2,4-dienoyl-CoA reductase"
                     /protein_id="HCS1803792.1"
                     /translation="MSYPSLFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFY
                     AERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQI
                     LHTGRYSYQPHLVAPSALQAPINRFVPHELTHEEILQLIDDFAHCAQLAREAGYDGVE
                     VMGSEGYLINEFLTLHTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSM
                     LDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKL
                     KGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSGRADEINT
                     CIGCNQACLDQIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFAIN
                     AAARGHQVTLFDAHSESGGQFNIAKQIPGKEEFYETLRYYHRMIEVTGVTLKLNHTVT
                     ADQLQAFDETILASGIVPRVPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGF
                     DTAMYLSQPGESTSQNIARFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKAS
                     KPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVIC
                     AGQEPNRALAQPLIDSGKTVHLIGGCDVAMELNARRAIAQGTRLALEI"
     gene            complement(17544..19895)
                     /gene="ygjK"
                     /locus_tag="OQQ19_002174"
                     /pseudo
     CDS             complement(17544..19895)
                     /gene="ygjK"
                     /locus_tag="OQQ19_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417551.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
     gene            complement(19912..>20658)
                     /gene="ygjJ"
                     /locus_tag="OQQ19_002175"
     CDS             complement(19912..>20658)
                     /gene="ygjJ"
                     /locus_tag="OQQ19_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YgjJ"
                     /protein_id="HCS1803793.1"
                     /translation="PDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWG
                     DFTPDLGYVIPNTRDIMTALKVQNLSGNFRYSVTATPAGHHDESKAWLHFGKYDRYDD
                     KYTYPAMMNGYIQYDLAEGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRADG
                     LDVPGSESGMMVSAMYEALKGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGGGR
                     FATAFDSRFYMKNASHDPSDQIFLMQYFYW"
BASE COUNT         5035 a         5411 c         5433 g         4779 t
ORIGIN      
        1 gatcaaacgt catggcagtt atcgcatacc ttttataatg attcattcag ccataaagaa
       61 cttggcgtaa ccgtcggagg cctgaacacc gataccataa acagcgcggt taacgggcgt
      121 tgggatgggc aatacggaaa tgtctacgct accgtatctg atagttatga ccgtaagaat
      181 catgatcatc tttcggcctt tacgggcact tatagctcta cgctggctgt cagtcgctat
      241 ggcgttaatt tgggagccag tggtacagac gatttgctgg gtgcggtatt ggtggatgtg
      301 aaaggcttct ctgaacagga tgaagagagt caggatctgc aactcgaagc gcgggtggca
      361 ggcagccgaa ctttgcagct tggtcaaagc gacagtgtgt tgttccctta tcctggattt
      421 cagtctggtt ttgttgaggt taacgacagt agccagggca atcagcaggg gacaacaaac
      481 atcattaacg gtgcagggaa tcgtgaatta atgttgttgc ctggcaagct gcgctatcgc
      541 gaagtgtctg ccagctttaa ctacaactat atcggtcgtt tattactgcc ggcagcggtg
      601 aaaaaattcc cgattgtggg gctgaacagc gccatgttac tggtagctga agatggcgga
      661 tttacacttg aaattaacgg cagcgaaaaa gagctctatc tgctttccgg gcagcaattc
      721 cttaagtgtc cactgagtgt tgaaaagaaa cgcgccagca ttcgttacag cggagatgtt
      781 acttgtagtg tggtgactta ttcacaatta ccggagttga aacagcctaa attacgtgga
      841 aacgttcaga cggcgcaaag ggaggttgca ccatgagaaa tcgattgatt gcggcgatat
      901 tgggcttgtt tggcacgctc actggcgttc aggcagctcc tgacgtgacc agtgaaatta
      961 cgtatgattt ggcatctggt agagcggatt attacttctg gaaggatgaa gcgtcggcag
     1021 gaaataatgg atatatgtgg tatgaatgtt cgtatcctga cctccaacaa acctgtacag
     1081 ctaatggaaa tatatcgaca gtacaaatct atttaactga acaacgcagt gggatgcgtt
     1141 ggccggtaaa actcaaagga tttaaaacag ccattgtaag tagcgatgaa gcgccgctag
     1201 gatgcaaggg ggggcaaagg gcttcagacg aatcttaagg attctaatag atcttcatgt
     1261 acagaagatg gtcaacatta ttatatatac gatacaaagt ttcttacgct ctaccttgag
     1321 cagacagaga tgaagaattt gccgattggt ggcgtctgga aggggaaagt taaattacat
     1381 tcgaacagcc cggcccagga ctatttcgca aatattaccc tgaatacgct cgaccccaac
     1441 catattgacg tgttcttccc ggagttcgcc cacgccacgc cgagggtgca gttagacttg
     1501 catccaacag gaagcgttaa cggcagcaac tacgcgcaag atctgaccat gttggacatg
     1561 tgcctgtacg atggttttaa cggtaatgcc atcagttatg aaatcatgct caaagatgaa
     1621 gggcgaccag ctgcagggcg cagagacggt gacttctcta tctatcgtca gggaggaacc
     1681 tctaccgacg agggagaacg cattgattac cgggtcaaaa tgtacaaccc ggaaaccggt
     1741 gggcaaattg atgtgcgcaa taatgaaaat atggtctgga acagcattaa cctgaaaagt
     1801 gtgcgtccgg tggtactgcc cggtattcgc tatgccgtga tgtgtgtgcc gacacccttg
     1861 gctctggcag tcgataaatt cagcgtgatg gataaacagg ccgggtacta catgggcaaa
     1921 ttgtcagtaa tctttacgcc ttccttgcca accatcaatt aaccctgcaa agcggacaaa
     1981 cgcttttttc tatataaacg acgaagccgc ctgataaggc ggcttcgtcg ttataactta
     2041 cgttaaacgt taatgttgcg gtgcgggatc gttatgtgat tcctgcgcta cctcaatcgc
     2101 cggtttgttc tgcaacacgg tccagataac cagcgcacct aacaggtcga acactgccag
     2161 tactgcgaac agcgggctga agccgatggt gtcagccagt gcaccgacaa ccagcgaaaa
     2221 cagcgtactt gccagccatg cggacatccc ggttaaaccg ttcgccgtcg ccacttcgtt
     2281 acgaccgaac acgtcagaag agagcgtaat cagcgcgcca gacagtgcct ggtgagcaaa
     2341 accaccgata cacagcagca taattgcgac atacgggttg gtgaacaggc cgatcatacc
     2401 cgggccaatc atcagcactg cacccagcgt tacgaccatc ttacgggaaa cgatcaggtt
     2461 cacaccaaac caacgctgga acagcggcgg caggtaacca ccgaggatac aaccgaggtc
     2521 agcaaacagc atcggcatcc aggcgaacat cgcgatctct ttcaggttaa agccgtaaac
     2581 tttaaacatg aacagcggga tccacgcgtt aaaagtaccc caggctggtt ctgccaggaa
     2641 acgcggcagc gcgatacccc agaactgacg gttacgcagg atctgaccaa cggacatttt
     2701 cttcgccgtg ctcacctggt gctgggcttc ctgaccatta ataatatagt cgcgttcttc
     2761 atcggtcaga tgcttctggt cgcgcggatg tttatagaaa atcagccatg ccatcgccca
     2821 gataaagctc aatgcaccgg agatgataaa tgccatctgc cagctgtgca ttacgattgc
     2881 ccataccacc agcggcggcg caatcatcgc accaatcgaa gaacctacgt taaagtaacc
     2941 taccgcgatg gaacgctctt tcgccgggaa ccattcggag ctggctttca gacccgccgg
     3001 gatcatcgct gcttccgcgg caccgactgc accacgagca atcgccaggc cacccctgct
     3061 accagccagc gcggttgcac cacagaatac ggcccacagt acagcaaaca ttgcataacc
     3121 gattttcgta cccagcacat ccagtacata gcccgctacc ggttgcatga ccgtataagc
     3181 agcagaatag gctgcgatga tataggaata ctgttgggtg gagatgttta actcttccat
     3241 cagagttggc gcagctgccg ccacagtgtt acgcgtcagg taaccaagca cggtgccaag
     3301 cgtcaccagt gcgatcatat accaacgtaa ccctttaatt ttacgcatgt aaaacctcat
     3361 cgttttgtta tatccgcagg aagcgcggcc atcatcccgc cagaggctga agatgttagt
     3421 tacgaccggg taaccgaaaa aaaaccggca cgccccgaac gttgccatga aagtttcgtg
     3481 ctaattcggc ttccgtaccg gttaacccga ttcatctaac aaatgaatga atcggcaatt
     3541 tgcattccgt cgacttatga tttgcgacgg cagaaagatg acttgtcata caactttaaa
     3601 aggtgagagc catcataaat gtgcgaatat ttgtagggac attacctgac gacagcgagg
     3661 ccagtactgg cgcggcctgc agcgagattt accactttga gagtaatttt tttaactacg
     3721 tttattgatc taactcacga aaatatcttc ggactctgga aattggtgtg ataactttgt
     3781 cagcatcgca ccataagcaa gctagctcac tcgttgagag gaagacgaaa atgactccgt
     3841 ttatgactga agatttcctg ttagataccg aatttgcccg ccgtctgtat cacgactacg
     3901 caaaagacca gccgattttc gattaccatt gccatttgcc gccgcagcag attgcggaag
     3961 actatcgttt taaaaacctg tatgacatct ggctgaaagg cgatcactac aaatggcgcg
     4021 ctatgcgtac caacggtgtg gccgagcgtc tgtgtaccgg tgatgcgtct gaccgtgaaa
     4081 aatttgacgc ctgggcggcg actgttccgc acactatcgg caacccgtta taccactgga
     4141 cgcacctcga actgcgtcgt ccgtttggta tcactggcaa attgctttct ccgtcaactg
     4201 ccgatgaaat ctggaacgaa tgtaacgaac tgctggcgca ggataacttc tccgcgcgcg
     4261 gcatcatgca gcagatgaac gtgaaaatgg tcggcaccac cgatgacccg atcgattctc
     4321 tggagcatca cgcagagatc gccaaagacg gctctttcac catcaaagtg ctgccgagct
     4381 ggcgtccgga caaagccttc aacatcgaac aggcgacctt taacgactac atggcgaagc
     4441 tgggcgaagt ttccgatacc gacattcgcc gctttgctga cctgcaaact gccttgacca
     4501 aacgtctgga tcacttcgcc gctcacggct gtaaagtgtc tgaccatgcg ctggacgtgg
     4561 tgatgtttgc tgaagcgaac gaagcggaac tggacagcat tctggcgcgc cgtctggctg
     4621 gcgaaaccct gagcgagcac gaagtggcac agttcaaaac tgcggtactg gtgttccttg
     4681 gtgccgaata tgcacgtcgc ggctgggtac agcagtacca cattggcgcg ctgcgtaata
     4741 acaacctgcg tcagttcaaa ctgctggggc cggatgtagg ctttgactcc atcaacgacc
     4801 gtccgatggc agaagagttg tctaagctgc tgagcaagca gaacgaagaa aacctgctgc
     4861 cgaaaaccat tctgtactgc ctgaacccgc gcgataacga agtgttgggc accatgatcg
     4921 gtaacttcca gggcgaaggt atgccgggca aaatgcagtt cggttccggc tggtggttta
     4981 acgatcagaa agacggtatg gaacgtcaga tgacccaact ggcgcagctc ggtttgctga
     5041 gccgctttgt cggtatgctg actgacagcc gtagcttcct gtcatacacc cgtcacgaat
     5101 acttccgccg cattctgtgc cagatgatcg gtcgctgggt ggaagcgggc gaagcaccgg
     5161 cggacatcaa cctgctgggc gagatggtga aaaatatttg ctttaacaat gcgcgtgact
     5221 acttcgccat tgaactgaac taaggtctgg ggttgatatg caatacatca agatccatgc
     5281 gctggataac gtcgcggtcg ctttagcgga tttggctgaa ggcacagaag tcagtgtcga
     5341 taaccagact gttacgctgc gccaggatgt tgctcgtgga cataaatttg cgttaacgga
     5401 tatcgcaaaa ggggccaatg tcatcaaata tggcctgccg attggttatg cattggcgga
     5461 tattgcggcg ggggaacacg tccacgccca caatacgcgc acgaatctga gcgatctgga
     5521 tcagtatcgc tatcaacctg attttcagga tctgcctgcg caagcggcag atcgtgaagt
     5581 gcagatctat cgtcgcgcta acggcgatgt cggggtgcgt aacgagctgt ggatcctgcc
     5641 aaccgtgggc tgtgtcaacg gcatcgcgcg gcagatccag aaccgttttc tgaaagagac
     5701 caacaacgct gaaggtaccg acggcgtgtt cctcttcagc cacacctacg gctgctcaca
     5761 gctgggcgac gatcacatta atacccgcac catgctgcaa aacatggtgc gccacccgaa
     5821 cgcaggcgca gtgctggtga ttggtctggg ctgtgaaaac aactaggttg ccgcattccg
     5881 tgaaacgctg ggcgatatcg atcctgaacg cgttcatttc atgatctgcc aacagcagga
     5941 tgatgagatc gaagccggga tcgagcattt gcatcagctg tataacgtga tgcgcaacga
     6001 taaacgcgag ccaggcaaac tcagcgaact gaagtttggt ctggagtgcg gtggttctga
     6061 cggtctttct ggtattactg ctaacccgat gctggggcgt ttctctgact acgtgattgc
     6121 taacggcggt actaccgtac tgaccgaagt gccggagatg tttggcgcag agcagttgct
     6181 gatggaccat tgccgcgacg aagcaacgtt tgaaaaactg gtcaccatgg tcaacgactt
     6241 taaacagtac tttattgccc atgatcagcc gatctacgaa aacccatcac cggggaacaa
     6301 agcgggcggt atcaccacgc tggaagacaa atcacttggc tgtacccaga aagcgggttc
     6361 cagtgtcgtg gttgacgtgc tgcgttacgg cgagcgtctg aaaacgccag ggctgaactt
     6421 gttaagtgcg ccgggtaacg atgccgtagc gaccagcgcc ctggcgggtg cgggctgcca
     6481 tatggtgctg ttcagtactg gtcgcggcac gccatacggt ggatttgtgc cgacggtgaa
     6541 aatcgccacc aacagtgaac tggcggcgaa gaaaaaacac tggctcgact ttgacgcggg
     6601 tcagctgatc cacggtaaag cgatgccgca gttgctggaa gaatttatcg acaccatcgt
     6661 tgagtttgcc aacggtaaac aaacctgcaa cgagcgtaac gacttccgcg aactggcgat
     6721 cttcaaaagc ggcgtaacgc tataaagtcg aaatgagttg ttaataaaaa acggcgtttc
     6781 ataatgtgaa gcgccgtttg cttttccata cctgataagg atttatcatg accgcgtatt
     6841 ggctggccca gggcgtgggt ttcatcgcct ttctgattgg tatcacaaca tttttcaatc
     6901 gtgacgaccg tcgcttcaaa aagcagcttt cggtctatag cgccgttatt ggcgtacatt
     6961 tttttcttct gggcacctat cccgctggtg ccagtgccat ccttaatgcc attcgtacat
     7021 tgattatcct tacgcacgcg cagcttatgg gtaatggcga tttttattgt gctgactggc
     7081 ggaattggcc tcgcgaagtt ccatcatcct gtcgaactat tgccggttat cggtacgatt
     7141 gtcagtacca gggcgctgtt ccgctgtaaa gggctcacca tgcgctgcgt gatgtggttt
     7201 tcaacgtgtt gctgggtgat tcacaacttc tgggcggggt cgataggcgg cacaatgatt
     7261 gagggtagtt ttctgcttat gaatggcttg aatatcattc gtttctggcg gatgcagaaa
     7321 aggggaattg atccgtttaa agtagagaaa acccctcccg ccgtagacga aaggggttaa
     7381 acaattaatt acgcagggcg ctatttgcca gacgatcgtc ttccgcctgg caagctgccg
     7441 cagtgaacag cacgtcagtt gaagagttca gcgcggtttc gcaagagtcc tgcaatacgc
     7501 cgatgataaa gccgacggca accacctgca tggcgatatc gttcgaaata ccgaacatat
     7561 tacaggccag cgggatcagc agcagagaac cccccgccac gccggatgcg ccacaggcac
     7621 acagagaagc caccacgctc aacagcagcg ccgtgggcag atcgaccggg atacccagcg
     7681 tattaaccgc agccagcgtc aacacggtaa tggtgattgc tgcgcccgcc atattgatgg
     7741 tggcacccag cggaatagaa acggaatagg tatcgcgatc cagattcagc ttttcacaca
     7801 gtgccatatt caccggaatg ttcgccgcag agctgcgggt gaagaaggca tacacgccgc
     7861 tttcgcgcag gcacagcagc accagcggga acgggttacg acgaattttc caccacacca
     7921 gcaatgggtt aaccaccagc gccaccagta acatacagcc aaccagcacg accagcagtt
     7981 gcgcgtagcc ccacagtgtg gagaaaccgg tggttgccag ggtagaagaa accagaccaa
     8041 aaataccaat cggtgcgaag cgaatgacca gtttcaccat aaaggtgacg gcattcgaca
     8101 gatcgttgac caggtttttg gtggtctcgt taccgtgacg cagtgcgaaa ccgaggccaa
     8161 ttgcccacac caggatcccg atgtagttac ctttcagcag cgcgtcgatg gggttggaaa
     8221 ccatgctcat taccagcccg cgcatcactt ctacaatgcc tgacggtggc gaaatatcac
     8281 ccgcgctact ggataagtgc agggtagaag ggaaggcgaa gctgaaaacg actgcggcca
     8341 gagcagcaga gaaggtaccc agcagataga ggaacaaaat agggcggata ttggttttct
     8401 gcccgtgctg gtggttagca atagatgcca tcaccagcat caacaccagg atgggggcaa
     8461 cggctttcag tgcgccgacg aacaaagtac ctaacagacc aacagcttcc gccgcgggtt
     8521 ttgagatcca tgccagaaga atccccagaa caaggccgac caggatttgt tttaccaggc
     8581 tgccatgagc cagacgccgg aatagccccg gtgaacgttg cgtagtcatt tttcgatcct
     8641 ttcattgtgt tgtcgcacat ccctggtgcg ttctgtcgac gcatctttca ggatgtaaca
     8701 aagtgtttgc aaggtcgagt ataaggaaag ttacagcttc gggaagcgaa aaatgctgga
     8761 ttttaaagag aggtcatatt ttgcaactta attgttacat ttgtttgaca taaacagagg
     8821 gaaggactgg ctactaaggc tgattagata acatatgggc aaaactattt ggaatatgag
     8881 aacggttgcg ctcctttaat gtgctatgcc atataaagtc actggcgcag ggagcgcgca
     8941 gggggcagcc aatcgccgcc gccccctgca cccccaggct ctggcgaaca aaatcgccgc
     9001 tgcgcgattc cctcagctta tcccttgcgg ctaccgggtc gggcgcaagg gaacgtccct
     9061 gtaagatgcg ccctcgccgc gcatccatgc gcgtcgcccc ggcctccagg gaacgcttcg
     9121 gcgattttga cgccaccaac acccgtgcgg tctttttgta aagagctaca agccaattac
     9181 ataattaata gctcaccttt gtctggaatg agttatctct aggaatggct taatatacag
     9241 cgaatcattc tccccgctgc ttatcatgcc gataattcac cctggcgttg ataataaacg
     9301 tcatcaccag aatgccaaac accacgccca gcgagacggc gattggaata tggtagaagt
     9361 cgacaatcag catcttgata ccgataaaca ccaggatcac cgccaggcca tatttgagca
     9421 tcgagaaacg ctctgctacg cccgccagca ggaaatacat cgcacgcagg ccgaggatcg
     9481 caaacaggtt tgaggtcagc acaatgaacg ggtcagtggt cacggcgaag atagccggaa
     9541 tgctatccac ggcgaaaatc acgtcgctca attccaccag aatcagtacc agcatcagcg
     9601 gtgtggcgta cagcaatcca ttcttacgca caaagaaatg ctcgttgtcg atggtgtcgg
     9661 tcatgcgcaa atgaccgcgt agccagcgca ccagcggctt gtcgccaatg cctgattcat
     9721 cttcatgggc gagcgccatc ttcacgccgg taaacagcag gaaggcaccg aagatataca
     9781 ggatccagtc gaactgcgaa attagccagc tgccagtgaa gatcatgatg gtacgcagaa
     9841 caatcgcccc gagcacgcca tacaccagca cgcggcgttg taatgccgcc ggaacagaga
     9901 aatagctgaa caacatcagc cagacaaaga cgttatcgac cgccagcgat ttctcaatca
     9961 gataacccgt gagaaaggcc agtgcctgtg gatcggcaac ggcgcgacct tcggtttgca
    10021 ccagatacca ccagaaagcg gcgttaaaca gtaacgacag cgtcacccaa accagcgacc
    10081 aggccgcagc ctgtttcatg gtcatggcat gtgccccacg acgcccctgc aacaacaggt
    10141 cgatagccag cataatggcg acaacaacag cgaatccgcc ccatagcaac ggcgtgccga
    10201 cagtattcat agaagttcct tacacataaa aaaaacggcc aacgtcggaa gacgtcagcc
    10261 gctgcttttt atgcatagac ctcgccttcc ggcaaggtct cacttacaac aaaaaaggaa
    10321 tacgtctgcg tattcctttc ggggtgcccg gtgaccggat gtggtttttc acacatcgta
    10381 atgacgatcg accggcaatg aagttactcc cctttgcagg taacaaagta tgacagacca
    10441 ttcagccagt caatggtctg ttacatacct tttacactgt tttactttgg caattatagt
    10501 tttacgctat ctgccggaaa aatcacccca gtctggcggc ggatctcagt cagcagtttg
    10561 gcggtgatgc gactgaccgc cagccctgga tgatccacca gatgctcatc caccagggta
    10621 gcaaacagct ctgcttcgta gagcatggta ttaatatgct gcggctgggt gagatcctgc
    10681 atctggctgc cacgcggcac gaagcacagt ttctggcatt cagacagttt ttcaatcacc
    10741 agcgatcccg cttcgccctg aatctcgctt tccaggacag aatcactgac ctttgagtgc
    10801 agcaacgtaa cgctgaaatc accgtaatcc atcaccacca cgccgtgggc atctacgccg
    10861 cttgccaaca aactggcggt tgcctgcacg cttttcggtt caccgaataa tgccaccgcc
    10921 gacgccaggc agtaaaagcc gatatccata attgaaccgt tagagaatgc cggattaaag
    10981 gtgttgggat tctcaccatc caggtaacgt tgataccgcg aggaatactg gcaatagttg
    11041 aaaaagactt tacgcaattt gccgactttc ggcagcgcct ggcgcagcaa atgaaagttc
    11101 ggcaggctgg cggttttaaa tgcctcaaac agcaccacct gattttcccg cgcacaggca
    11161 atggcggcat ccacttccgc cagattcgac gccagtggtt tctcgcaaat cacatgaatt
    11221 ttatggctaa ggaaaagttg tgtctgggaa aagtgcaggg cattcgggct ggcaatatac
    11281 accgcgtcaa tggcatcgct ttccgccatc gcttccagcg aggtaaacag atgctcgaca
    11341 gaaaaatcat tggcgaagtg ctgggcctgt tcaaggctgc gggaatatac ggcggttaac
    11401 ttgtatttac cgctctcatg ggcggcctcg acgaactggc gagtgatcca gttcgtacca
    11461 atcacagcga aacgtatcat aacgcgtgga tactccataa agggattctg tcgtcaatgt
    11521 agcacgcctt tttcatcttc gacgtgcgca gatacgcatt attcttttgc cggacagcca
    11581 tgctcactaa acggcccaat catgaccgat ggcccgagat atttcggctg gctatggagg
    11641 attttggcgt caatcacggc gctgacacga gcgagtttct ctcgcagttg agtataaaaa
    11701 ccgtgcttca tattgaggtc aggcgcgtta aaaccgatag cgtcgatgct gtactgtttt
    11761 gccagccaga tggcgcgttg gttatgaaat tcttgcgaga taatggtgat atggttttca
    11821 ccaaaaacct ttttggcacg cactaccgaa tccagcgttg agaatccggc atagtcgcag
    11881 aagatcactt tcgccggtac gcctttagcg atcaaagcct tctgcatacc tgatgcttca
    11941 tcgtaatttt tacgtccgtt atcgccactt accagtagcc atttcacttt tccggcgtgg
    12001 tacaacgctg ctgcggtatc aatacgtcgg gtaaagtagc gattacccgg cctggccccc
    12061 agcaataagc ccacgttacg cgccggaact gcgttgacat cgctccaggt cagctgcttg
    12121 ctggcgttga ccattactcg atcggcgata aaaatggtcg ctcctgccac aagtaacagt
    12181 aagcaggcaa tctttagagt ccggcgagaa aaacaaatac ggagaagaag gcggggctgc
    12241 atggtcgtta tccttaacga aaggggggag gtcgatttta ggcgctaaag aaagaaaaga
    12301 taacgcctga catcattttc agattttgtc ctgcccaagc gacaactgcg ttagccacag
    12361 ccgggtgtcg aactccagct ggtggtactg cggctccata tggcagcaca actggtaaaa
    12421 cgctttgtta tgctctttct ccttcaggtg cgccagttcg tgcaccacga tcatacgtaa
    12481 aaacggttcc ggcgcgttgc gaaacacagt agcgacgcgg atctctgctt ttgctttcag
    12541 cttgccgccc tgcacacgag aaacagcggt atgtaacccg agcgcgtttt ttagcacatg
    12601 gatcttattg tcatacatca ctttattgat cggcggggca ttgcgcagaa actgattttt
    12661 tagatcctga gtatattgcc agagggcttt atcggtggcg tagtcgtgtg ttcccggata
    12721 gcgttttgcc agcacatcgc ccagacgctg ttcgttaatc agcgttcgca cctgggaaag
    12781 tagctgctcg ggataaccct gaagataagt aagattgctc ataaccgccc acgaaaaaga
    12841 gaaaaagggt atactcacgc acccttttca ggggcaacgt cgaaatttta tcattcagga
    12901 gggccgatga gccacttaga caacggtttc cgttcactga cactacaacg ttttccggcg
    12961 acggatgacg ttaacccgct acagtcgtgg gaagcggcgg atgaatattt gctgcaacag
    13021 ttggacgaca cagaaatccg cggcccggtg ttgatcctga atgatgcctt tggtgcgtta
    13081 agctgcgcgc tggcggaaca taagccgtac agcattggcg actcatacat cagtgaactg
    13141 gcgacgcgcg agaatttacg cctcaacggg attgatgagt cgagcgtgaa gtttctcgac
    13201 agcaccgccg actacccgca acagccgggt gtggtgctga tcaaagtgcc gaaaacactg
    13261 gcattgctgg aacaacaact gcgtgcgctg cgcaaagtgg tcacgtcgga tacacgtatt
    13321 attgccggtg ccaaagcccg tgacattcac acttccacgc tggaactgtt cgaaaaagtg
    13381 ctcggcccga ccaccaccac gctggcatgg aaaaaagcgc gcctgattaa ttgcacgttc
    13441 aatgaaccgc cgctggccga tgcgccgcag accgttagct ggaagctgga aggtactgac
    13501 tggactatcc ataaccatgc gaatgtcttc tcccgcaccg ggcttgatat cggcgcgcgc
    13561 ttctttatgc aacatctgcc agagaatctc gaaggggaga ttgtcgatct cggttgcggt
    13621 aatggcgtta ttggtctgac gctgcttgat aaaaatccgc aggcgaaagt ggtgtttgtc
    13681 gatgaatcgc cgatggcggt tgcttccagc cgtttgaacg ttgaaaccaa catgccagag
    13741 gcgttggatc gcagcgagtt tatgatcaac aacgcgctct ccggcgtgga gcctttccgc
    13801 tttaatgctg tgctctgcaa cccgccgttt caccaacaac atgcgctgac cgataacgtc
    13861 gcctgggaga tgttccacca tgcccgccgc tgcctgaaaa tcaacggcga gctgtatatt
    13921 gttgccaacc gtcacctgga ttacttccat aaactgaaga agattttcgg caactgcacc
    13981 accatcgcca cgaataataa atttgtggtg ctgaaagcag tgaagctggg gcgtcgtcgg
    14041 taagattggg agttacctgc cggatgcggc gttaacgcct tatccggcct acgttcagca
    14101 cgttactccc aggccggata agacgcggca agcgtcgcat ccggcaatgt ctgcccagtt
    14161 ctggaatcgc gcttccataa aacaaaaaat ccctctcacc atcctctaca ttctcttgtt
    14221 tagcgttttt ctacgtttat tcttccgtca cacagataaa ttcatacgtt gccaatctgt
    14281 caacggatgt tatcatattg ccaatttgtc aacggacgtg atgaagaatg cacctgataa
    14341 ctcaaaaagc attgaaagat gctgcggaaa aatacccgca acataaaacg gagttggtgg
    14401 ctctggggaa catgattgct aagggatatt tcaaaaaacc tgagtcatta aaagcagtat
    14461 tcccatctct ggataacttc aaatatctgg ataagcatta tgttttcaat gttgggggca
    14521 atgaattacg tgttgtagca atggtctttt ttgaatcgca aaagtgctac atacgtgaag
    14581 ttatgacgca taaagaatac gatttcttta ccgctgttca tcgtactaag gggaaaaaat
    14641 gattgcgatt gccgacatct tgcaagcagg agaaaagcta actgcggtgg taccttttct
    14701 ggcgggtatt cagaacgagg aacaatacac ccaggcgctg gaactggtag atcatctgct
    14761 gctcaacgat cctgaaaacc ccttgctgga tctggtgtgt gccaaaataa ccgcgtggga
    14821 agaatcagcg cccgaatttg cggaatttaa tgccatggct caagccatgc ctggcggtat
    14881 agccgtgatt cgtaccctta tggatcaata tggtttaacc cttgccgatc tgccggaaat
    14941 tggcagtaaa tctatggtgt cacgcgtttt gagcgggaag aggaaattaa cgctggaaca
    15001 cgctaaaaaa ttggcaacgc gattcggcat ttctcccgcc ttgtttattg attaacgcga
    15061 cgtgccggat gcgttgcatc cggcgcttca aataacgatt taaatctcca gcgccagccg
    15121 tgttccctgg gcaattgccc gtcgtgcgtt cagctccata gccacatcgc agccgccaat
    15181 taaatgcaca gttttcccgc tatcaatcag cggttgcgcc agcgcgcggt ttggctcttg
    15241 ccctgcgcag atcaccacat tgtccacagc taatacctgc gtttcgccgt tgatcaccac
    15301 atgcagcccg tcatcgtcaa tcttctgata acttacgcct gggatcattt tcacaccccg
    15361 cgagagcagg gtggtgcgat ggatccagcc ggtggttttg cctaacccct gtcccggttt
    15421 gctggctttg cgctggagca tcacaatttg ccgtgggcta cgcgggatct gcattccctg
    15481 cgggcttaag ccaccagcct gttgtaggct gctgtcgatc ccccactcat tacagaacct
    15541 ggcgatattc tggctggtgg attcgcccgg ctgacttaaa tacatcgccg tatcaaaacc
    15601 aatcccgcca caaccgatga tggcaacctt gttgcctacc ggcgctttgt cgcgcagtac
    15661 atcgagataa ctcaatacct tcggatgatc gatcccgtcg ataggcggaa cgcgcggcac
    15721 gatcccactg gcgaggatcg tttcatcgaa cgcctgtaac tgatccgccg tcacggtgtg
    15781 attgagtttc agcgtcacgc ccgtcacttc gatcatccgg tggtaatagc gcagcgtttc
    15841 gtaaaactcc tctttgccgg ggatctgttt ggcgatatta aactgcccgc cgctctcgct
    15901 gtgggcatca aacaatgtta cctgatgccc acgcgccgcc gcgttaatgg caaacgccag
    15961 cccagcaggt cccgcaccga ccaccgccag attttttttc tgcacggcag gaaggattgg
    16021 cattttggtt tcgtggcagg cgcgaggatt caccaggcac gaggtgactt tgccaacgaa
    16081 gatctgatcg aggcaggcct gattgcagcc aatgcaggtg ttgatctcat cggctcgccc
    16141 cgattgcgct tttgacagca gttccgcatc agcaagaaac ggtcgtgcca tcgataccat
    16201 atcggcatcg ccgcgcgaga gaatatcgtc ggcaacctgc ggatcgttaa tccggttggt
    16261 ggttaccagc ggcagcgaga cgtggccttt cagtttgcgc gtgacccagc taaatgcgcc
    16321 gcgcggcacg ggcgtggcaa tggtcggaat acgtgcttca tgccagccaa tgccggtgtt
    16381 gataatggtc gcgcccgccg cttcaatggc ctgcgccagc tctaccgttt cggcaaaagt
    16441 cccgccgtct tcgaccaggt cgagcatcga cagtcggtag ataataatga agtcgttgcc
    16501 gacgcgttcg cgcaccgcac gcactacttc tacggcaaat cgcatccggt tgcggtaatc
    16561 gccgccccac tggtcactac gctgattggt gtgcagcgtc agaaattcgt tgatcaaata
    16621 cccttcggac cccattacct ctacaccgtc gtatcctgcc tcccgtgcca gttgcgcgca
    16681 gtgggcgaaa tcgtcgatca gttgcaggat ctcttcatgg gtgagttcgt gaggaacgaa
    16741 acggttgatg ggggcctgca atgcggaggg agcgaccaga tgcggttggt agctgtagcg
    16801 cccggtatgc aaaatttgca gggctatttt gccgccttcc tgatgtaccg cttcggtaat
    16861 ggtgcgatgg tgtgggatct ggctggcgtc gttgagcatt gcgccacctt ccatgccaac
    16921 gcctgttaaa tctggtgcaa tgccgccgct gacaatcagc gccacgccgt gacgggcgcg
    16981 ttcggcataa aacgctgcca gccgctcggc accgtccggg tattcctcca gcccggtgtg
    17041 cattgagccc atcaacacgc ggttttttaa cgtggtaaaa cctaaatcca gcggggcgaa
    17101 cagcgacggg tagctcataa aattgtccag tatgtaaaat aattgttatg tggtcggatg
    17161 agttctaatt tagccgtcgc cggagaaaag ggaaaagggg agtgcggggt ttgtgatggg
    17221 attcaaaaag aatacgcccg gtggtaacgc cggatgcgac gcttgccgtg ttttatccgg
    17281 cctgggggat tgcacatgta gggcggataa ggcgttcacg ccgcatccgc cagtggcgcg
    17341 gtgcagatgc cggatgcgac gcttgtcgcg tcttatccga cctacgggaa cgcacatgta
    17401 gggcggataa ggcgttcacg ccgcatccgc cagtggcgcg gtgcagttgc cggatgcaac
    17461 gcttgccgcg ttttatccgg ccaggaggat tgcacatgta gggcggataa ggcgtttacg
    17521 ccgcatccgc cagcagttgc aaattattgc ttacggaaaa aatcgttata caacatatac
    17581 aaatgcgcgg cactccagga gaaatttggt gcgccttgct gcgcgccagt cagcgggttg
    17641 taattctcct gaattgggcc atcggcggtt aatcctttgg cgtgccggaa gaacgtatcc
    17701 gccagcttca gggcatcatc acgataaccg taacgctcca tccctttcag agcaaaccag
    17761 aactgatcca cccatacgcg cccgcgccag tagatatcag cgccaaaagc cggattggtt
    17821 aacgccgccg ttcccagcgg gacaaaggtg ttgaactctt taggatcgag catcaccttc
    17881 accaccgcgt cggcattggc ctgcgttgcc gcaccgttaa acagcggcga ccagccttcc
    17941 ggccctttac cgcgctcaac aatcggtttg cccgcgcagc cgttcgccag tggtttatct
    18001 tcaatacgta cgtcatagta gaactgggta gtcgggtcga acatacaggt gttgatgtag
    18061 tccgcgagct gctgtgccaa ctggcgatag cgtttggcct cttctggctt accgaggatg
    18121 gttgccatct ccgccagata atggttatcg ctgtacatat agctggcctg atccaccgac
    18181 tcctgcaata gcgagtagcc cagcaacgtt ccgtcctgac tgcggttttc ggcgaatttc
    18241 accgtccagt cgctacgttt gccaccatta gcgacatatt tatccaactg ttctttgtcg
    18301 ataaaaccaa agacggcggc atcatcacgc cccgattccc acgacgcagc gacctgtgcc
    18361 ggaatttcca gactgtcgta ctggcctttc tccaccacgc gggcgtagtt gttcagccca
    18421 gactgcgtct cttctttgtt gcctttcttc accgcaaaca gcatctcgcc gctctcagtg
    18481 ttgtgggctt tgtcgcgggt cgcgccatat tccggcacgc cgttgccgtt gtgatcgcgg
    18541 ttacgtaacc accagtcgtg ataggcgacc agtttcgggt acatctctgc caaccaggct
    18601 ttatcctggg tgacgttgta cacttctatc accgaccagg cggcaaggct gggtttggta
    18661 ttacgttcgt tccagttgcc gccatcgcca ccacgctcgg ggctaaggtt ccacgctatc
    18721 aggtcgggga caaagcccac atcctgcgga cgcacgcggt cgccaggctg gatctgccag
    18781 gagaagaccg cgcggatatt ctctttggcg atgtccggat tgaaatgcgc catcgcaaac
    18841 gcctgcttct aggtatccca cggccaggtc tgattgccgg agaaccagcg cccggtcacc
    18901 gacggtgtaa cggtgttaaa tttcaccgca ccgcccggtg agcgccagtt accgttgagc
    18961 gtttcgatcg ctttcaccgc gacgcgcgtc tgttccggcg tcgcatccgg attggttaac
    19021 cctttcttca ggtattcttc ccagcgttgc tgcgaggcgg tgagataaaa cgccggacgc
    19081 gccagaatat cgcggatctg catttgctct ttgctaactt cctgagcggt cagcagatgg
    19141 gaataggtgg tgtagagcgt ggtcgaaccg ttgatatgcg ccttactggt aaagcgatta
    19201 ccgttgattt cagtctgcac cggcagggat ttatgcacct gatattccga ttcgccggag
    19261 gtcagcagat cccaggtggc gcgcactttg ccaaaggtga ctttcaggcc atcacgggtg
    19321 gcgctgattt tgcgctgata gtcagggtat tcgccagcaa tggttttatc ggaaagcggt
    19381 ttcccttctt tcgcttccag tttttccagc agttcgccgt cccacaccag atccagcggt
    19441 ttattgctgg tgattttggt ttccagtagt gacgtgcgcg gcgtggcgaa gcgcagagtc
    19501 atttcgactt gcacatcttt tgctgtcagt ttttgcacca gcgcaccggg aatactgtat
    19561 gcctccagcg taaagtcgac tttcttgccg tcctgccaga cggtcaggcg gtcgaaattg
    19621 ctggccataa agttgatgta ctcttccgtc agcagcgcaa cgcccggaaa gccgcccatg
    19681 gtgttagggc cgtctggcaa cagatgacca tgccaggctc cgagatcgaa aaacggatta
    19741 aaacgctggt gatcgtcgta atcgtaatcc ttcatgtact gcggcgcgcc agtacggtta
    19801 atcacgtttt tataattgtc ggcgttagcg gcatgggcgg aaaaacttat cagcagagcg
    19861 caggttactg gcgttaaaat agtttttatt ttcatgaaat tacagtcctt attaccagta
    19921 gaaatattgc atcaggaaga tttggtcgct gggatcgtga gaggcatttt tcatgtagaa
    19981 gcggctatca aaagccgtgg cgaaacgtcc gccgccgtat tcgtaccaga taccaaactg
    20041 catgaaagag gtggtttcat cgtcagcgtg gtcagggcga tgtttggcgt aggtgtaagc
    20101 ggtggagaga taaacgccct ttaacgcttc atacatggcg ctcaccatca tcccactttc
    20161 acttcccggt acgtccagcc cgtcggcgcg tccggtatgg tgccaggcgc gagcggcaaa
    20221 gttaggagtt agcaggcccg tgagatagag ctgtcctgtg ccgtcggtga tttccagacc
    20281 gttcatccag gtgatgcctt cggcaaggtc atactggatg taaccgttca tcattgccgg
    20341 ataggtgtat ttgtcgtcat agcgatcgta tttgccaaaa tgtagccagg ctttgctttc
    20401 atcatgatgt ccggcaggag tcgcggtgac gctataacga aagttgccgc ttaagttctg
    20461 taccttcagc gcagtcataa tgtcgcgggt attgggaatg acgtagccca gatcgggggt
    20521 gaaatcgccc caccattgca ggtcatccag cgaggaatcc tgacgcagac tgagcatgat
    20581 ttcggtgcca tcattggtac gataaccgcc atagaaacgg ttaattccgc cctcgaaacc
    20641 accccagcta tggtctgg
//
LOCUS       DAJVSY010000067        20603 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.067, whole genome shotgun sequence.
ACCESSION   DAJVSY010000067 DAJVSY010000000
VERSION     DAJVSY010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20603
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.067"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(56..481)
                     /gene="nudI"
                     /locus_tag="OQQ19_002176"
     CDS             complement(56..481)
                     /gene="nudI"
                     /locus_tag="OQQ19_002176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphatase NudI"
                     /protein_id="HCS1803794.1"
                     /translation="MRQRTIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEYGE
                     RIEEALRREIREELGEQLLLTEITPWTFSDDIRTKTYADGRKEEIYMIYLIFDCVSAN
                     REVKINEEFQDYTWVKPEDLVHYDLNVATRKTLRLKGLL"
     gene            760..1302
                     /locus_tag="OQQ19_002177"
     CDS             760..1302
                     /locus_tag="OQQ19_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803795.1"
                     /translation="MKKIALAGLAGMLLVSASVNAMSISGQAGKEYTNIGVGFGTEST
                     GLALSGNWTHNDDDGDVAGVGLGLNLPLGPLMATVGGKGVYTNPNYGDEGYAAAVGGG
                     LQWKIGNSFRLFGEYYYSPDSLSSGIQSYEEANAGARYTIMRPVSIEAGYRYLNLSGK
                     DGNRDNAVADGPYVGVNASF"
     gene            1402..2604
                     /locus_tag="OQQ19_002178"
                     /pseudo
     CDS             1402..2604
                     /locus_tag="OQQ19_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416752.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide mononucleotide deamidase-related
                     protein YfaY"
     gene            2824..3606
                     /locus_tag="OQQ19_002179"
     CDS             2824..3606
                     /locus_tag="OQQ19_002179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HCS1803796.1"
                     /translation="MLESSKVPALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYL
                     LLNELRRQRFLSLDHQENFCLWTRLVELSGHALSKMDLRELARPRLTQLMDTTGLLCH
                     LGIIDNGSAYYILKVESSATISVRSHEGKSLSLYRSGIGKCLLSWQPAAVQQSIIEGL
                     VWEQATPTTITHPQQLHEELARIRRQGWSYDNGEDYPDVRCVAAPVFNANNELTAAIS
                     VVGTRLQINEEYRDYLAGKSIACARDISRLLGWKSPFDLQAS"
     gene            3621..4826
                     /gene="rhmD"
                     /locus_tag="OQQ19_002180"
     CDS             3621..4826
                     /gene="rhmD"
                     /locus_tag="OQQ19_002180"
                     /EC_number="4.2.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311162.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnonate dehydratase"
                     /protein_id="HCS1803797.1"
                     /translation="MTLPKIKQVRAWFTGGATAEKGAGGGDYHDQGANHWIDDHIATP
                     MSKYRDYEQSRQSFGINVLGTLVVEVEAENGQTGFAVSTAGEMGCFIVEKHLNRFIEG
                     KCVSDIKLIHDQMLNATLYYSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLGGAV
                     RDEIQFYATGARPDLAKEMGFIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCGEDFW
                     LMLDCWMSQDVNYATKLAHACAPYNLKWIEECLPPQQYEGYRELKRNAPVGMMVTSGE
                     HHGTLQSFRTLSETGIDIMQPDVGWCGGLTTLVEIAAIAKSRGQLVVPHGSSVYSHHA
                     VITFTNTPFSEFLMTSPDCSTMRPQFDPILLNEPVPVNGRIHKSVLDKPGFGVELNRD
                     CNLKRPYSH"
     gene            4883..6172
                     /locus_tag="OQQ19_002181"
     CDS             4883..6172
                     /locus_tag="OQQ19_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416749.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1803798.1"
                     /translation="MSTALLDAVVKKNRVRLIPFMLALYVLAFLDRSNIGFAKQTYQI
                     DTGLSNEAYALGAGIFFVVYAFLGVPANLLMRKLGARTWIGTTTLLWGFLSAAMAWAD
                     TEAKFLIVRTLLGAAEAGFFPGMIYLTSQWFPQRNRASIMGLFYMGAPLALTLGSPLS
                     GALLEMHGFMGHPGWFWMFVIEGLLAVGAGVFTFFWLDDTPEQARFLSKQEKTLLINQ
                     LASEEQQKVTSRLSDALRNGRVWQLAIIYLTIQVAVYGLIFFLPTQVAALLGTKVGFT
                     ASVVTAIPWVAALFGTWLIPRYSDKTGERRNVAALTLLAAGIGIGLSGLLSPVMAIVA
                     LCVAAIGFIAVQPVFWTMPTQLLSGTALAAGIGFVNLFGAVGGFIAPILRVKAETLFA
                     SDAAGLLTLAAVAVIGSLIIFTLRVNRTVAQTDVAHH"
     gene            6190..6993
                     /gene="yfaU"
                     /locus_tag="OQQ19_002182"
     CDS             6190..6993
                     /gene="yfaU"
                     /locus_tag="OQQ19_002182"
                     /EC_number="4.1.2.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxy-L-rhamnonate aldolase"
                     /protein_id="HCS1803799.1"
                     /translation="MNALLTNPFKERLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLL
                     IDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKSLIKQVLDIGAQTLLIPMVDTA
                     DQARQVSSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDN
                     LDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAV
                     APDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRIKGSY"
     gene            complement(7034..7936)
                     /locus_tag="OQQ19_002183"
     CDS             complement(7034..7936)
                     /locus_tag="OQQ19_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISNCY family transposase"
                     /protein_id="HCS1803800.1"
                     /translation="MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQT
                     LRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAA
                     MQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDIT
                     IVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQ
                     CGDTSRFTRFIEEIAERSPLQKERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLE
                     QGIDRDQVLAATQLSEADLAANNH"
     gene            complement(8129..9319)
                     /gene="glpC"
                     /locus_tag="OQQ19_002184"
     CDS             complement(8129..9319)
                     /gene="glpC"
                     /locus_tag="OQQ19_002184"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic glycerol-3-phosphate dehydrogenase
                     subunit C"
                     /protein_id="HCS1803801.1"
                     /translation="MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLK
                     DGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMG
                     SVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSIAAQQAQYK
                     DQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQ
                     AITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWR
                     KLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAG
                     TYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLA
                     QALA"
     gene            complement(9316..10575)
                     /gene="glpB"
                     /locus_tag="OQQ19_002185"
     CDS             complement(9316..10575)
                     /gene="glpB"
                     /locus_tag="OQQ19_002185"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708132.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase subunit GlpB"
                     /protein_id="HCS1803802.1"
                     /translation="MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGS
                     LDLLSHLPDGQPVADIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQL
                     QGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLH
                     ELDLSVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMI
                     LMPACFGLADDKLWRWLNEKLLCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPG
                     DEVKKVTCKNGVVNEIWTRNHADIPLRPHFAVLASGSFFSGGLVAERNGIREPILGLD
                     VLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIA
                     QGCGGGVCAVSALHAAQQIAQRAGGQQ"
     gene            complement(10565..12193)
                     /gene="glpA"
                     /locus_tag="OQQ19_002186"
     CDS             complement(10565..12193)
                     /gene="glpA"
                     /locus_tag="OQQ19_002186"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic glycerol-3-phosphate dehydrogenase
                     subunit A"
                     /protein_id="HCS1803803.1"
                     /translation="MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIAT
                     GATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLS
                     FQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLD
                     AKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAE
                     YADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYN
                     EIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIV
                     LLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEP
                     AEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVEN
                     LNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKG
                     VQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL"
     gene            12466..13824
                     /gene="glpT"
                     /locus_tag="OQQ19_002187"
     CDS             12466..13824
                     /gene="glpT"
                     /locus_tag="OQQ19_002187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter"
                     /protein_id="HCS1803804.1"
                     /translation="MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLV
                     RKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL
                     AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV
                     WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP
                     PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS
                     PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI
                     ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG
                     YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRN
                     GG"
     gene            13829..14905
                     /gene="glpQ"
                     /locus_tag="OQQ19_002188"
     CDS             13829..14905
                     /gene="glpQ"
                     /locus_tag="OQQ19_002188"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HCS1803805.1"
                     /translation="MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLP
                     EHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRY
                     YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNH
                     STGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRI
                     KNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADG
                     IGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDAL
                     YNKAGVNGLFTDFPDKAVKFLNKE"
     gene            complement(14947..15189)
                     /locus_tag="OQQ19_002189"
                     /pseudo
     CDS             complement(14947..15189)
                     /locus_tag="OQQ19_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311149.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            15368..16018
                     /gene="inaA"
                     /locus_tag="OQQ19_002190"
                     /pseudo
     CDS             15368..16018
                     /gene="inaA"
                     /locus_tag="OQQ19_002190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416740.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide kinase InaA"
     gene            complement(16072..16326)
                     /gene="yfaE"
                     /locus_tag="OQQ19_002191"
     CDS             complement(16072..16326)
                     /gene="yfaE"
                     /locus_tag="OQQ19_002191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-like diferric-tyrosyl radical
                     cofactor maintenance protein YfaE"
                     /protein_id="HCS1803806.1"
                     /translation="MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGS
                     CRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM"
     gene            complement(16326..17456)
                     /gene="nrdB"
                     /locus_tag="OQQ19_002192"
     CDS             complement(16326..17456)
                     /gene="nrdB"
                     /locus_tag="OQQ19_002192"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006683700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HCS1803807.1"
                     /translation="MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQ
                     LSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISI
                     PELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDE
                     LIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFA
                     FAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDL
                     FVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIP
                     WINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL"
     gene            complement(17603..19888)
                     /gene="nrdA"
                     /locus_tag="OQQ19_002193"
     CDS             complement(17603..19888)
                     /gene="nrdA"
                     /locus_tag="OQQ19_002193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HCS1803808.1"
                     /translation="MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELR
                     SHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPAL
                     YDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNR
                     VTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTP
                     TRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHT
                     GCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMD
                     YGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQR
                     VKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLN
                     DVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAM
                     GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGECP
                     WFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSET
                     SSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLV
                     GIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAED
                     AQDDLVPSIQDDGCESGACKI"
BASE COUNT         4845 a         4990 c         5525 g         5243 t
ORIGIN      
        1 aattcgttaa ccactaaatt ttcaatctga cagccagtga tggctgtcat cattgttaaa
       61 gaagaccttt caaacgtaac gtttttcggg tggcaacatt caaatcataa tgcaccagat
      121 cttcaggttt tacccacgtg tagtcctgaa actcttcgtt tattttcact tctcggttgg
      181 cagaaacgca gtcaaaaatc aggtaaatca tataaatctc ttccttgcga ccatctgcat
      241 acgtcttggt gcgaatatca tcgctgaagg tccacggcgt gatttctgtc aaaagcagct
      301 gttctcccag ttcttcgcga atttcgcggc gtagtgcctc ttcaattcgt tcgccatact
      361 ccacgccgcc acccgaaagc gcccattgac cggggaaaac gccgcgatcg tcggccattt
      421 tgcacagcag ataagcacca tcattttgaa tcaaagggca tacaatagtc cgttgtcgca
      481 caggggtatt ccttataaat aaaaagaaac catgagaata cggtaactca gaaatatgtg
      541 aaagtgacag taatctcttt tgcgatgata actgcactta ttattatttt tgtgtgtatc
      601 ggtaaagtgt gtttattttt tcggcgttta attatttaag aagtatttag ttacaataag
      661 tgactagatc ccttttttcg ctcattgaat cctctgtgcc aggcagtaca atcccgcagc
      721 tttgggaatt ttgattaatt gcttgtggga aaggggataa tgaaaaaaat tgcgctagca
      781 ggtctggccg gaatgctgtt ggtttctgca tcggtcaatg caatgagcat cagcggtcag
      841 gcgggtaaag aatacaccaa tattggtgtc ggttttggga ctgaatcgac gggcctggcg
      901 ttaagcggta actggacaca taacgacgac gacggtgacg tcgctggcgt ggggctgggg
      961 ttgaatctgc ctctagggcc gttaatggcg accgttggcg gaaaaggcgt ttacaccaac
     1021 ccgaattacg gcgatgaagg ttatgccgca gcggtaggag gtggtttgca gtggaaaatt
     1081 ggcaacagct tccgtttgtt tggcgagtat tactactctc cggattcact ctccagcggt
     1141 attcaaagtt atgaggaagc gaatgctggc gcgcgttaca ccattatgcg tccagtcagt
     1201 attgaggcgg gttatcgcta cctgaatttg tcgggtaaag atggtaaccg cgacaacgcc
     1261 gtggctgacg gcccgtatgt tggggttaac gccagtttct gatcccttcc ggcgcggcat
     1321 tctgtcgcgc cattcagttt cttactacgc cttatctccc tttgcgttat agtgattcga
     1381 taacaaaagc aggagataac catgttaaaa gtggaaatgt tatccaccgg ggatgaagtg
     1441 ttacacgggc aaatcgttga cactaacgct gcctggctgg ccgatttttt ctttcatcag
     1501 gggctgccat tatctcgcct caatacggtg ggggataacc ttgatgactt agtcaccatt
     1561 cttcgcgaac gtagtcagca cgccgatgtg ctgatcgtta acggcgggct gggaccgacc
     1621 agcgatgatt taagcgcact cgccgctgcg acagcaaaag gtgaaggcct ggtgctgcat
     1681 gaagcctggc tcaaagagat ggaacgctat ttccacgaac gtggacgagt aatggcaccg
     1741 agcaaccgta aacaagcgga gctgcctgcc agtgctgaat ttatcaataa cccggtaggc
     1801 accgcctgtg gttttgccgt gcagcttaat cgttgcctga tgttctttac tcccggcgta
     1861 ccgtcagaat ttaaggtgat ggtcgagcac gaaatcctgc cgcgcctgcg cgagcgtttt
     1921 tctttaccac agccgccggt ttgtctgcgt ttaactacct ttggtcgttc ggaaagcgat
     1981 ctggcacaaa gcctggacac tctacaactg ccgccgggcg taacaatggg ctatcgctct
     2041 tcaatgccga ttatcgaact gaaactcacc ggaccggcaa gcgagcaaca ggcgatggaa
     2101 aaactgtggc tggacgttaa acgtgttgcc ggacagagcg tgattttcga aggcaccgaa
     2161 ggactgcccg tgcagatcag tcgcgaattg caaaaccgcc agttcagcct gacgttgagc
     2221 gagtaattca ccggtggttt attggctttg caactttctc gcgcaggtgc tccattgctg
     2281 gcgtgtgaag tggttccttc acaggaagaa aacctggcgc aaactgcgca ctggattaca
     2341 gaacggcggg ccaaccattt tgccgggctg gcactggctg tttcgggttt cgagaacgaa
     2401 catctcaact ttgcgctagc cacaccagac ggcactttcg ctctgcgtgt gcgtttcagc
     2461 actacgcgct acagcctggc tatccgtcag gaagtgtgcg caatgatggc actgaatatg
     2521 ctgcgccgtt ggttaaacgg ccaggatatc gccagtgagc atggctggat tgaggttatt
     2581 gagtccatga ccttatctgt ctgattccgc cactctgtgc cggtttactg caccggcaca
     2641 ttccccctcc ggcaaaactt gtccaacctg ttgcactcaa taagaaaaaa tccgtgcact
     2701 gattcacaaa tttgtgcgta atttctccag tccgctggac gaggagcggg atttgatgcg
     2761 cttcacaatt ttactccccc tgagcaacga gactgattcc agtatctaag actggagtcc
     2821 agtatgttgg aatcaagcaa agttcccgcc ctgacacggg ctattgatat tctcaatttg
     2881 attgcccgca ttggcccctg tagtgctgcg acgatcattg acacattggg aatccctaaa
     2941 agcacggcct atttgctgct taatgaactc aggcgtcagc gttttcttag ccttgatcac
     3001 caggaaaatt tttgtttgtg gaccaggctg gtggagcttt ctggtcatgc gttaagcaag
     3061 atggatctcc gggaactggc tcgaccgcgt ttgacgcaac tgatggatac caccgggctg
     3121 ttatgtcatc tggggattat tgataacggc agcgcttatt acattttaaa agtggagtca
     3181 tcagccacta tcagcgtgcg ttcccatgaa ggaaaaagcc tttcgcttta tcgctccgga
     3241 ataggtaaat gcctgctttc ctggcaacct gcagcggtac agcaaagtat tatcgaaggg
     3301 ctggtctggg agcaggcgac acccacaacg attactcatc cacagcaact tcacgaagaa
     3361 ctggcgcgta ttcgccgtca gggctggagc tatgacaacg gcgaagatta ccccgatgtc
     3421 cgttgtgtcg ctgcgccggt gtttaacgcc aataacgagc ttaccgctgc gatctcggtg
     3481 gtcggtaccc gcttacaaat caatgaagaa taccgtgatt atctggcggg caagtccatt
     3541 gcctgcgcca gggatatttc acgtctgttg ggatggaaaa gtccctttga cttacaagcc
     3601 tcataacaat ggagaacatc atgaccctac caaaaattaa acaggttcgc gcctggttta
     3661 ctggcggtgc gacagcagaa aaaggcgctg gcggcggtga ttatcacgac cagggggcga
     3721 atcactggat agacgatcat attgccaccc cgatgagtaa ataccgcgat tacgagcagt
     3781 cacgccagtc atttggcatt aacgttcttg gcacgttggt tgttgaagtc gaagcagaaa
     3841 acggccagac cggattcgct gtttcgacag ccggtgaaat gggctgtttt atcgtcgaaa
     3901 aacaccttaa ccgtttcatt gagggtaaat gtgtcagtga tatcaaactg atccacgatc
     3961 aaatgctcaa tgccaccctg tattactccg gctctggtgg cttggtgatg aatacgattt
     4021 cctgtgtcga tctggctctg tgggatctgt tcggcaaagt ggtcgggctt ccggtttata
     4081 aacttttagg cggcgctgtt cgtgatgaga ttcagttcta cgccacaggt gcgcgtccgg
     4141 atctggcaaa agagatgggc tttatcggtg gcaaaatgcc gacgcactgg gggccacatg
     4201 atggcgatgc ggggatccgc aaagatgccg ctatggtcgc ggatatgcgt gaaaaatgcg
     4261 gtgaagattt ctggttaatg ctcgactgct ggatgagtca ggacgtgaac tatgcgacca
     4321 aactagccca cgcttgcgcg ccctataacc tgaaatggat cgaagagtgc ctgccgccac
     4381 agcagtatga aggttatcgc gaactgaaac gcaacgcgcc agtcggaatg atggtcacca
     4441 gcggtgagca ccacggcaca ctgcaatctt ttcgtacgct ttcagaaacc ggtatcgaca
     4501 ttatgcagcc ggatgttggc tggtgcggtg gtttaaccac gctggtggaa attgccgcaa
     4561 tcgccaaatc cagggggcaa ctggtggtgc cgcacggttc gtctgtttac tctcaccatg
     4621 cggtgatcac cttcaccaat acgccattca gcgaattcct gatgaccagc ccggattgtt
     4681 caacgatgcg tccgcagttt gacccgattc tgctcaatga gccggttccg gtgaatggtc
     4741 gtattcataa atcagtgctt gataaacccg gttttggcgt cgaactcaat cgtgactgca
     4801 atttgaaacg cccctacagc cactaatcac tccgggcgtt gctgtgacaa cggtaacgcc
     4861 cacatattct aaggagcttt ttatgagcac cgctttgctt gacgccgtgg tgaagaaaaa
     4921 ccgtgtgcgt ttaattccgt ttatgttggc gctgtatgtg ctggcgtttc tcgaccgttc
     4981 gaatatcggt tttgccaaac agacctacca gattgatacc gggttgagta atgaagctta
     5041 tgcgctggga gcaggcattt tctttgtggt atatgcgttt ctgggggttc cggcgaatct
     5101 tttgatgcgc aaactggggg ccagaacctg gattggtacg acaacactgc tgtggggatt
     5161 tctttcggca gccatggcat gggccgatac tgaagcgaaa tttctgatag ttcgcactct
     5221 gcttggtgct gcggaggccg gatttttccc tggtatgatt tatctcacct cgcaatggtt
     5281 tccgcagcgt aatcgcgcca gcattatggg gctgttctat atgggcgcac cgctggcgtt
     5341 aacactggga tcaccgcttt ccggcgcgct gttggagatg catggattta tggggcatcc
     5401 cggctggttc tggatgtttg tgattgaagg attgttggca gtcggtgctg gggtattcac
     5461 attcttttgg cttgatgaca caccggagca ggcacgtttt ctgagtaaac aagaaaaaac
     5521 gttgcttatc aatcaactgg caagtgaaga acaacagaaa gtgacttctc ggctgagcga
     5581 tgcgctgcgt aatggccgag tctggcaact agcgattatc tacctgacca ttcaggtggc
     5641 ggtttacgga ttaattttct tcctgccgac ccaggttgcg gcattgctgg gaacaaaagt
     5701 gggctttaca gcgtcggtgg tcaccgccat tccgtgggtt gcggccttgt ttgggacctg
     5761 gcttattccg cgctattccg ataaaaccgg cgaacggcgt aatgtcgcag cgctgacatt
     5821 actggcggcg ggcattggta ttggtctgtc cgggctgctt tctccagtaa tggcgatcgt
     5881 agcgctgtgt gttgcagcta tcgggtttat tgccgtgcag ccggtgttct ggacgatgcc
     5941 gacacaactg ctttccggta cggcgctggc tgcggggatt ggttttgtaa acctgtttgg
     6001 tgcagtgggc gggtttattg ccccgatcct gcgcgtgaaa gcagaaacgt tatttgccag
     6061 cgatgcggca ggattactga cactggcagc ggtggcggtc atcggttcgc tgattatttt
     6121 cactctgcgt gtaaatcgta ctgttgcgca gaccgacgtg gcacatcatt aaataggtta
     6181 aggaacacga tgaacgcatt attaaccaat ccctttaaag aacgtttacg caagggcgaa
     6241 gtgcaaattg gtctgtggtt aagctcgact acttcttata tggcagaaat tgccgctact
     6301 tccggttatg actggttgct gattgacggg gagcacgcgc caaacaccat tcaggatctt
     6361 tatcaccagc tacaggcggt agcgccctat gccagccaac ccgtgatccg tccggtggaa
     6421 ggcagtaaat cgctgattaa acaagttctg gatattggcg cgcaaactct attgatcccg
     6481 atggtcgata ctgccgatca ggctcgtcag gtgtcgtctg ccacgcgcta tcctccctac
     6541 ggtgagcgtg gtgttggggc cagtgtggca cgggctgcgc gctggggacg cattgagaat
     6601 tacatggcgc aagtcaacga ttcgctttgt ctgttagtgc aggtggaaag taaaacggca
     6661 ctggataacc tggacgagat cctcgacgtc gaagggattg atggcgtgtt tattggacca
     6721 gcggatcttt ctgcgtcgtt gggctacccg gataacgccg ggcacccgga agtgcagcga
     6781 attattgaaa ccagcattcg gcggatccgt gctgcgggta aagcggctgg ttttctggct
     6841 gtggctcctg atatggcgca gcaatgcctg gcgtggggag cgaactttgt cgctgttggc
     6901 gttgacacga tgctctacag cgatgccctg gatcaacgac tggcgatgtt taaatcaggc
     6961 aaaaatgggc cacgcataaa aggtagttat tgatatcaaa ggcccatggg gatcggctgt
     7021 gggcctgtgt taattagtgg ttattcgctg ccagatcggc ttcgcttagc tgggtggccg
     7081 cgagcacctg gtcacgatca atgccctgtt ccagcatgcg caaagcaatt ttaatggctt
     7141 gttcatgcat accttcctgc cagccaattt gatgcccttc ctgccgtagc cgttcagcaa
     7201 tagtcattaa tctctccttt tgtagtggtg aacgttcggc aatctcctca ataaaacggg
     7261 tgaaacggga ggtatcgccg cattgcagca gataattaaa cagtgtttgt agctggctgt
     7321 cattagtgaa gcctctaacc aaaagcgtgg tgatcctgtc gaccatgccg attaaatcgc
     7381 ggtcgcgaat atgcttttga atcagttcca gcagagctat acgccgatgt tgcatgatct
     7441 catcgtcagg tacgatggtg atatccacca acggaaaagc ttcggtgtac aactgccggg
     7501 caagttgcgg atcgtcaaac tcatccagcc agttaagtga gtacgggtag ggcgatgttt
     7561 cgccatgata aaacagcaat ggcaccacca gcggaactct gtcatagcct ttatccaggt
     7621 gacgctgcat ggcggcagtg gcatagcgca ttagccgaaa agccatattc ttttctgcag
     7681 agctttgatg ttcaatcacg cagtagatat agccgtcacc gtcgctggtt tccacggacc
     7741 acaaaacatc cgagtagtaa gcgcgtaaac ttttttcaat aaaactagtg ggttccaggc
     7801 gtaaggtttg caggttgcaa agcttgcgca gtggttctgg taaatgtatt tcgagaaaat
     7861 cccgtgcggt ttcgggtgtg aacataaagg ttttaaatac cgcatcatgc ggggaggagg
     7921 ttgttgattc ggtcatggtt gtccgtcacc tgatatttat gatgacgcga cattacggtt
     7981 atcctaggcc tttgacatct gccagtttca gcctttgcga gacgttttca gaggaatttt
     8041 cactgcgttg caacgcatac attgggcacg gaatcgtgta cgcaaaaatg cccggtaacc
     8101 acatgcttac cgggcatcag aaaggagttt aagccagcgc ctgggccagt agcgtaatcg
     8161 gatgttcgca gcgaagactt gtggacatct caatctgcca tttacaggtt tcgcagtcgg
     8221 tgaccaccag atctgcgccg ctttcttcta tctggcggaa cagtggtgcg ccgatggctt
     8281 gtgaggtggg gtagttctct tttttgaaac cgtaagtacc cgcaataccg cagcactggg
     8341 aatccagcac cgttaactca agccccggga ttttacgcaa cagctccagg gtgtagagcg
     8401 tccagcccat tttttccata tggcacggag tgtgataaac cactttcagc ggcagcggtt
     8461 tcagcggtaa cgttttgcct tcgtccagct tgcgccacag ccagcgggtt gccagttcga
     8521 tatgatcgcg caagcctttg ttgtcgacat tcagcacttc cgggtattcg tcgcgcaggg
     8581 caaatgtaca ggttgaggag gtggcaatca ccggaatgcc ttttactccc acagcttcgc
     8641 ggatcgactc tacattcgta attgcctgtt tgcgtgcttt atcggtaaag ccgttggcga
     8701 ttagcggtac gccgcagcat ttttctttgc tgagcagttg tacaccggta cccattgcgt
     8761 tgagcacttt aattaaatct ttacctaact gcggatggtt gtagttaacg aagcagccgt
     8821 gaaagaaagc gacctggtct ttatattgtg cttgctgagc cgctatgctg cgataccagc
     8881 gacggaacgt gccgaaggag tatttcggta gcgtgcgacg atgatcgatt tttaacgccg
     8941 catcaagcag ctgccgcacc ggtttcagcg aggtagcggt gttgacgatt ggtgcgaacg
     9001 gcgtggaaac gctacccatc aggtcggtat gactcaacac aaaattacgc agcgacgggc
     9061 gcgtggtgtc atattttgcc cgcgcgcgct ggataatatc gccaatcttc acatcggacg
     9121 ggcaggcgac ttcacaacgt ttgcagttga tgcaatattt cagcgcctcg tcatacagtg
     9181 cgccatcttt caaacgcaga cgctcgccat ccggcccggc ttgttttggc cctggataac
     9241 cgggattcac ccggctcacc gggcaggcgg tggtgcagac ggtgcactta atgcagtttt
     9301 cgaagctggt gtcgttcatt gttggcctcc tgcgcgttgg gcaatctgtt gagcggcatg
     9361 taaagcactg acggcacaaa caccgccgcc gcatccctgg gcgatgggat caaatccgcc
     9421 cagcaccgaa ccgatggcaa acaggttctc aatggtttgc cctgcctgcg acgggcgtag
     9481 cgtctcatca gtggttacac cgaactgctg ccacggttgc ggcgcaaaaa aatcgccctt
     9541 ataccattca ccccgcgtgg cggtttgtag cacatcaagg ccgagaatcg gctcgcgaat
     9601 gccgttacgt tccgctacca gtccgccact aaagaaactg ccgctggcga gaaccgcgaa
     9661 atgtggacgt agcggaatat cggcgtgatt gcgggtccag atttcattca ctacgccatt
     9721 tttacaggtc acttttttca cttcatcgcc cggcatccac acgccaccct ggcgcacaaa
     9781 ctggcgctgt aactggtttt gcagacgaat gcccagcacg gaaggcggca gcgttggcaa
     9841 aagcatcagt gaacaaagta gtttttcatt caaccaacgc cacagtttgt catcggctag
     9901 gccgaagcag gcaggcatca ggatcatttc gcaggtattg gcgacaggaa taagcgcatc
     9961 aagtaacagc ggccagtttt cttcattatc aaggaaacgg gcgatattca cagcgcgaaa
    10021 ttcggtggcg ttattgcgca ggacatccag ttccggcagc tctatttctg cggtttcaac
    10081 cgaaagatcc agttcgtgca acgaagccgc cgcaagatgc gcctgaaaat ccatcaggcc
    10141 gcttatcccg accacacata ttttcttcgc gggcaacggc cagacgggga cttctggcga
    10201 acttagccag gtagagcgca gagtgccgag cggcgtaatc cgctggtgag ccagttctac
    10261 gctgccctgc aattgcgcac cgctttcagc gattaatgcc tgcgcctggc aagcgagatc
    10321 gagcacgcgt tgtggcccga gaagagagta aggatgtgca ggtgcctgct gacgcaaaga
    10381 ttccagtcca ctgtgaatgt ctgccacggg ttgaccatct ggcagatggc tcagcaaatc
    10441 cagcgaaccg gatgagaaat gcaacgcgct ttgaccacgc gtgacaatgg cacagcgcag
    10501 gccgtgtttt tgcagttgca ggccacagag taatccggcg aggccgccgc ccataatgac
    10561 agtatcaaag cgcatctttc tgctccttct ccagaccaca cagtccctga taaacccagc
    10621 gggtaaattc gctttcgcgc agtgcgtctc cccaggcgat gggttgcacg cctttccagc
    10681 gttcgttaag gaaggtggaa agttgctcga tagattgcgc ggacgtcgtg acgttaaacc
    10741 gttgcagcag tccggcagcg cggcaggcgc agagttcgcc ctggcaggtg cccatcccca
    10801 cacgggtacg acggcgtaaa tccagcaggc tattaacgtt taaattttct accgcgtact
    10861 gcacttcacc cgcagttacc gcttcgcact cacataccag gctacggtgc agacggcctt
    10921 cgctcagcca ggcaggcgtg cgatcgccat gacgataaac cgcagaaccg cgcagcgggg
    10981 caggcaggga gatgacttta cgcaaggtaa cttcagcggg ttcttgtgaa ccaggcagtg
    11041 ccagatcggc agtcgtacag gggcgcgtgt tgcccagttt gcggcatacc gcgtcggtag
    11101 cccattcagc catcagccga taggtcatca gtttgccacc ggtgatggtg ataaatccgt
    11161 ccagaccatc gcgttcagca tggtcgagca gcacgatgcc acggctgacg ttacgtccgc
    11221 tcggatcgtc atcgctggca accagcgggc gcacgccaga ataggcccgc aaaatgcgcg
    11281 ttttcgccat cacgggggcc agtttttccc cttcacgcag cagaatatca acctcttctg
    11341 ccgtcactcg attatcgtca atctcgttgt aatcaatacg taaagaggtg gtaccaatca
    11401 gcgaaatggt atcgccaggc accagaatat cggcgtcgga aggtttacgg cagcggttga
    11461 tcacatgctg gttaatgcgg tgatccatga tcagcagcga tcctttcgcc gggaacatgc
    11521 gaatgcgcag atcggcatat tcggcaatgt gttgccccca gatcccagcg gcattaacca
    11581 cgacaggtgc atgaagggcc tgagtttcgc cggtgagatg gttacgtaca cgaacaccgc
    11641 acaccgtcgc gccttcacga atcagccccg tgacttcatg agcggtaagg ataacggcac
    11701 cgtgttcttt ggcatccagc atgtttgctg cggtcagacg aaatggatca acggtgccat
    11761 ccggaacttt caccgcgcca atcagtgccg ggttaacggc aggttcgata atgcgcgctt
    11821 gctgcgggtc tatagcttct gcgctgatcc ctgcttcttc gcaggcgcga ataaaagtgg
    11881 cctggaatga gaggtcatct tccggcaggg tgataaacag gccgttggtt ggttcaacgc
    11941 agtgacgtgc aatgcgtttc aggatctggt tttcactaat gcattcgcgg gccgattccg
    12001 catcggttac cgcatagcgc gcaccgctgt gcagcaggcc gtggttacgc ccggtggcac
    12061 cggttgcgat gtcgtggcgc tcaaccaaaa tcacgcgcag cccgcgcagg gcacagtcgc
    12121 gggcaatccc ggctcccgtt gcgccgccgc caatgataat cacgtcactt gattgcgagt
    12181 cgcgagtttt cattgttatc cctctgaagt tcgtttttta ccatttagcc atagtaaaaa
    12241 catgaattgt ttgatttcgc gcatgttcgc tcataattcg aaagtgaaac gtgatttcat
    12301 gcgtcatttt gaacattttg taaatcttat ttaataatgt gtgcggcaat tcacatttaa
    12361 tttatgaatg ttttcttaac atcgcggcaa ctcaagaaac ggcaggttct ctcactgaat
    12421 caggctgtta atcataaata agaccacggg ccacggaggc tatcaatgtt gagtattttt
    12481 aaaccagcgc cacacaaagc gcgcttacct gctgcggaga tcgatccgac ttatcgtcga
    12541 ttgcgctggc aaattttctt ggggatattc tttggctatg cggcttacta tttggttcgt
    12601 aagaactttg cgcttgctat gccttatctg gtcgagcagg gattctctcg cggtgattta
    12661 ggtttcgcgc tttcggggat ctcgatcgct tatggatttt cgaaattcat aatgggttcg
    12721 gtatcagatc gctcgaatcc gcgcgttttc ctccccgcag gtttgattct ggcggcggca
    12781 gtgatgttgt ttatgggctt tgtgccatgg gcgacgtcga gcattgcggt gatgtttgta
    12841 cttttgttcc tctgcggttg gttccagggg atggggtggc cgccgtgtgg tcgtactatg
    12901 gtgcactggt ggtcgcagaa agaacgtggc ggcattgtgt cagtgtggaa ctgtgcgcac
    12961 aacgttggtg gtggtattcc gccgctgctg ttcctgctgg ggatggcctg gttcaatgac
    13021 tggcatgcgg cgctctatat gcctgctttc tgcgccattc tggtggcatt attcgccttt
    13081 gcgatgatgc gcgatacccc gcaatcctgt ggcttgccgc cgatcgaaga gtacaaaaat
    13141 gattatccgg acgactataa cgaaaaagcg gaacaggagc tgacggcgaa gcaaatcttc
    13201 atgcagtacg tactgccgaa caaactgctg tggtatatcg ccatcgccaa cgtgttcgtt
    13261 tatctgctgc gttacggcat cctcgactgg tcaccgactt atctgaaaga ggttaagcat
    13321 ttcgcgctgg ataaatcctc ctgggcctac ttcctttatg aatatgcagg tattccgggc
    13381 actctgctgt gcggctggat gtcggataaa gtcttccgtg gcaaccgtgg ggcaaccggc
    13441 gttttcttta tgacactggt gaccatcgcg actatcgttt actggatgaa cccggcaggt
    13501 aacccaaccg tcgatatgat ttgtatgatt gttatcggct tcctgatcta cggtcctgtg
    13561 atgctgatcg gtctgcatgc gctggaactg gcaccgaaaa aagcggcagg tacggcagcg
    13621 ggctttaccg ggctgtttgg ttacctgggc ggttcggtgg cggcgagcgc gattgttggc
    13681 tacaccgtgg acttcttcgg ctgggatggc ggctttatgg taatgattgg cggcagcatt
    13741 ctggcggtta tcttgttgat tgttgtgatg attggcgaaa aacgtcgcca tgaacaatta
    13801 ctacaaaaac gcaacggagg ctaatggcat gaaattgacg ctgaaaaacc ttagcatggc
    13861 gatcatgatg agcactatag tcatgggaag cagtgcaatg gcggcggaca gcaacgaaaa
    13921 aatagtcatc gcccatcgcg gtgccagtgg atatttgccg gagcatacgc tgccagcaaa
    13981 agcgatggcg tatgcgcagg gagcggatta tctggaacag gatttggtga tgaccaaaga
    14041 cgaccatctg gttgttctgc atgaccatta tctcgatcgt gttactgatg ttgccgatcg
    14101 tttcccggat cgggcgcgca aagacggtcg ttactacgcg atagatttca cgctggatga
    14161 aattaagtcg ttgaaattta ccgaaggttt cgatattgaa aacggtaaaa aagtgcagac
    14221 ttatccgggg cgtttcccaa tgggtaagtc cgacttccgg gtgcacacct ttgaagaaga
    14281 gattgaattt gttcaggggt taaatcactc taccgggaaa aatatcggta tttatccaga
    14341 aatcaaagcg ccgtggttcc atcatcagga agggaaggat attgcggcaa aaacgctgga
    14401 agtgctgaag aaatatggtt acaccggtaa agacgataaa gtttatttgc aatgttttga
    14461 tgctgatgag ctgaagcgta ttaagaatga gctggaaccc aaaatgggca tggagctcaa
    14521 tctggtacag ctgattgcct ataccgactg gaatgaaacg cagcagaaac agccggatgg
    14581 aagctgggtt aattacaact acgactggat gtttaagccg ggtgccatga aacaggtggc
    14641 ggaatatgca gatggtattg gtccggatta ccatatgttg attgaggaga catcgcagcc
    14701 gggtaatatc aaactcactg gcatggtgca agatgctcag cagaataaac tggtagtgca
    14761 tccttatacc gtgcggtcag ataaactgcc tgaatacact cctgatgtga atcagttata
    14821 tgatgctctg tataacaaag cgggtgtaaa tgggctgttt actgatttcc ctgataaggc
    14881 agtaaaattt cttaataaag agtaatgtta ctgcaggatg gcgttcatgc gccatcctgt
    14941 ctcatatcaa atttttccaa tcgccactaa ttgttccatg cacatttgta gtaaaaacag
    15001 tggactgcct tctaccggct tttctttagc cagcaacgaa atctgtcgat agaaagttgg
    15061 ttcgagagga acggaacaca attcacctgc aatgcttttc agcgttaact ctggttgtaa
    15121 ggcgatgcct aatccctgtc gaataaaatt catcgctgta tccgcctgat taaattcaca
    15181 ttttatctgc tgggcgcact attagtggta gtggctggtg gaatctatgc gctgcaaatg
    15241 aagggtaaaa gcggtgtcaa gctagtagtg gcaaaagaaa ttcattaata cgacacgttt
    15301 cattaagatt ttcctcaggt aaccacctat agtcattgtc gttaataaaa acgacaggcg
    15361 atagggtatg gcagtttcag caaagtacga cgaatttaat cactggtggg caacagaggg
    15421 cgactgggtt gaagagccta actatcgccg taatggtatg agcggggtgc aatgcgtcga
    15481 gcgcaacggc aaaaagctgt atgtaaagcg catgacgcat catctgtttc attctgtacg
    15541 ttatccgttc ggccgaccaa cgattgtccg tgaggttgcg gtaattaaat aactggaacg
    15601 ggccggtgtc atcgtgccga agatcgtttt tggtgaagcg gtgaaaattg agggtgaatg
    15661 gcgagcgttg ctggtgactg aagatatggc ggggttcatc agcattgctg actggtatgc
    15721 ccagcatgca gtatcgcctt attctgacga agtacggcaa gccatgttga aagcagtggc
    15781 gctggcgttt aagaaaatgc atagcattaa tcgtcagcat ggctgttgtt atgttcgcca
    15841 tatctatgtg aaaacagaag gtaaggcaga agctggtttt cttgacctgg agaaaagtcg
    15901 tcgccgcttg cgtcgcgata aagcgattaa tcatgacttc cgccagctgg aaaaatatct
    15961 ggagccaatc cccaaagcgg actgggagca ggtgaaagcg tattactacg ccatgtaatc
    16021 gttgtaggcc agataagaca cataagcgtt gtatctggca ctacaaccaa ttcacatctc
    16081 gatttcaata tcgccttttg cccggcaaca acagggcaaa atttcccccg gctgaataaa
    16141 ggctaacggt tcggcaatcc agtcaacttg acctgcaacc aggcgtgtgc gacaggagcc
    16201 gcagtaacct tcgcgacact ggtactcaac cgccacattg tgggattcca gcgctgccag
    16261 aagggaaggg tgttcatcct ggcacagcag ttgtgtgcca gtgatgcgca gggtaacgcg
    16321 ggccatcaga gctggaagtt actcaaatcg tcggtgtcca cttccgagtc aatctgcccg
    16381 accagataag aactgacttc cacttcctgc ggagcaacct gcacgttatc agacaccagc
    16441 caagtgttga tccacgggat cgggttggag cgcgtctgga acggcagatc caaaccgact
    16501 gcctgcatac ggatattggt gatgtattca acgtactggc agagaatgtc tttattcaga
    16561 ccaatcatcg aaccgtcgcg gaacagataa tccgcccagt ctttctcctg ttgagctgcc
    16621 tgaacaaaca ggtcatagca ctcctgctta cactcttcgg caatttccgc catctcagga
    16681 tcgtccgcgc cgctgcgcag cagattcagc atatgctggg tgccggtcag gtgcagggct
    16741 tcgtcgcggg caatcaggcg aataattttg gcgttgcctt ccatcaattc gcgttctgca
    16801 aaggcaaagg aacaagcaaa gctgacgtag aagcggatcg cttccagcgc gttaacgctc
    16861 atcaggcaaa gatacagttt tttcttcagc tcgcgcaggc taacggttac ggttttaccg
    16921 ttaacggtgt gggtgccttc gcccagaagg tgccagtagc tggtcatttc gatcagttca
    16981 tcgtaatagc tggagatccc ttccgcacgt ttctggatct gctcgttggt gacgatatcg
    17041 tcaaacacaa cagacggatc gttaacgata ttacgaatga tatgagtata ggaacgggaa
    17101 tgaatcgttt ctgagaacgc ccaggtttcg acccaggttt ccagttccgg aatagaaata
    17161 agcggcaata gcgccacgtt cggactacga ccctgaatgg aatccagcag cgtctgatat
    17221 ttcaggttgc tgataaaaat gtgtttttcg tgctccggca gcgcctggta atcgatacgg
    17281 tcgcgggaga cgtcaacttc ttccggacgc cagaagaaag agagctgctt ttcgatcagc
    17341 ttttcgaaga tgtcatattt ttgctgatcg tagcgggcca cgttgaccgg ctgaccaaag
    17401 aacatcggtt ctttgagctg atcatttttc gtctgtgaaa aggtggtata tgccatgagt
    17461 gtgtcctgtt gggagtttaa tgccggataa ggcattttac gccgcatcct gtgcctgatg
    17521 cgacgctggc gcgtcttatc aggcctacaa atccgagccg taggccggat aaggcgttca
    17581 cgctgcatcc ggcatctcaa tatcagatct tacatgcgcc gctttcgcag ccatcgtcct
    17641 ggattgacgg taccagatcg tcctgcgcgt cttcagcgcc gtcacgggtg ttctgataat
    17701 acagcgtttt gaccccgaat ttgtaggcgg tgagcaggtc tttcagcaac tgctgcatcg
    17761 gcacttttcc tgacgggaaa cgtgacggat cgtagttggt gttagcagag atcgactgat
    17821 cgataaattt ctgcatgata cctaccagtt gcaggtagcc atcgttaccc ggcatttccc
    17881 acagcagctc ataggcgtcg tgcaggtgct cgtagtccgg caccacctgg cgcaaaatac
    17941 cgtctttcga cgctttgatg ctgacgtaac cgcgcggcgg ttcaataccg ttagtggcgt
    18001 tagagatctg cgaagaggtc tcggacggca tcagggcaga aagcgtggag ttacgcaggc
    18061 cgtgcgtttt gattgattca cgcaatgctt cccagtcgta atgcagcggc tcattagcga
    18121 tggcatccag atctttctta taggtatcga tcggcaggat ccctttcgcg taagtggttt
    18181 cgttaaacca cgggcactcg ccttgctctt tagccagctc attagacgct ttcagcaggt
    18241 aatactgaat cgcttcgaag gttttatgcg tcaggttgtt ggcgctgccg tcggagtagc
    18301 gtttaccgtg cttcgccagg tagtaagcga agttgatcac accaataccc agcgtacgac
    18361 gacccatcgc tccacgtttg gcggccggga tcgggtaatc ctgataatcc agcagcgcgt
    18421 caagtgcacg aaccgccaga attgccagct cttccagttc atccaggtta ttaattgcgc
    18481 ctaggttgaa agcagacagc gtacacagcg cgatttcacc gttctcgtcg ttgacgtcgt
    18541 tcagcggttt ggtcggcagg gctatctcca ggcacaggtt agactgacgc actggcgcga
    18601 tggccggatc aaacgggcta tgggtattac agtggtcaac gttctgaata tagatacgac
    18661 cggtagacgc acgttcctgc atcatcagcg agaacagctc aacggctttc acacgctgct
    18721 tgcggatgct gtcgtctttc tcatatttgg tatacagacg ttcaaactct tcctgatcgg
    18781 cgaagaacgc gtcgtacagc cccggtacgt cggacgggct gaacagggtg atatcttcac
    18841 ctttcagcag acgggtatac atcagtttgt tgatttgtac cccgtagtcc atatgacgca
    18901 cgcggttgcc ttccacacca cggttgtttt tcaacaccag caggctttcc acttccagat
    18961 gccacatcgg gtagaacagc gttgccgcac cgccgcgcac accgccctga gagcaggatt
    19021 tcaccgctgt ctggaaatgt ttgtagaacg gaatgcagcc ggtatggaac gcttcaccac
    19081 cgcgaatcgg gctacccagc gcacgaatac gcccggcgtt gatgccgatc ccggcacgct
    19141 gggaaacgta tttaacaatt gcgctggagg tggcgttgat ggaatccagg ctgtcaccgc
    19201 actcgatcag tacgcaggag ctgaactgac gagtcggggt acgcacgccg gacatgattg
    19261 gcgtcggcag cgaaatttta aatgtggaaa ccgcgtcgta aaaacgcttc acatattgca
    19321 ggcgcgtttc acgcgggtag ttcgagaaca ggcacgcggc aaccagaata taaaggaact
    19381 gggcgctctc atagatttcg ccggtcacgc ggttctgtac cagatatttg ccttccagct
    19441 gcttaacggc agcataagag aaggtcatat cacggtcgtg atcgataaac gtgtccatct
    19501 gcttgaactc ttcttccgtg tagtcttcca gcagatgatt atcgtatttg cccatctcga
    19561 ccattttcac cacgtggtcg tacagcgcag gtggctcaaa ctggccgtag gcttttttac
    19621 gcaggtggaa gatcgccagg cgcgcggcga gatactgata atccggcgca tcacgggaga
    19681 tcaggtctgc ggcagccttg ataatggttt cgtggatgtc agaggtcttg ataccgtcat
    19741 aaaactgaat gtgggagcgc agctcgacct gggaaatcga aacgttatgc agtccttctg
    19801 ccgcccaatc cagaacgcga tggattttgt cgagattgat gcgctctgtg ctaccgtcgc
    19861 gctttgtcac cagcagattc tgattcatgt atgtcgtacc tgtttttgga attctttccg
    19921 caatagtttc atgcagacta cctgtagtac gggaagctgc ttagaacact atatataggg
    19981 ggtatgtttg ggattcactg caagatagtg tgaaaatggc cctcttgcaa gtgcataact
    20041 ttgtggataa ctcaggaagg aaaaagtggc tttcgcgcac cttaggtcag acaaggtgtc
    20101 cgggaaagtc aatgggaaga gaaaaatttg ttaaaaataa ctgttcggcg atttcttgaa
    20161 cggcagaata ggttggataa attgatatag atggtttatt aatctttttg ctaatgattg
    20221 caaaaattga tctaagcacg agtcatcaca taatctgatg tatcagttgt ggtcaatata
    20281 taagcgaatg taagcgattg ttgatgtcga aatggttgtt ttctattcgg ttattgttaa
    20341 atgcgaagcc attttgttaa tttaccttat attataaaaa aattattcat tactttaatt
    20401 tagtttaaat ataactggta tcccttaagg ttattaactt gaattatgac gcactgatat
    20461 tattcatcaa ataataacaa aatagccatt gcatcgggtt ggacaattta caaaagaaag
    20521 ataacccata ttgtataatg cgtttaaata tgccgtctta tataaaatga tggtcagatt
    20581 aatatgcgga ttatctttct acg
//
LOCUS       DAJVSY010000068        20411 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.068, whole genome shotgun sequence.
ACCESSION   DAJVSY010000068 DAJVSY010000000
VERSION     DAJVSY010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20411)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20411)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20411
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.068"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            127..942
                     /gene="mepH"
                     /locus_tag="OQQ19_002194"
     CDS             127..942
                     /gene="mepH"
                     /locus_tag="OQQ19_002194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-endopeptidase MepH"
                     /protein_id="HCS1803809.1"
                     /translation="MAQINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKA
                     DKKKSTATTKKTQKTAKKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASA
                     SFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGG
                     SSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQG
                     RGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR"
     gene            1070..1651
                     /gene="sodB"
                     /locus_tag="OQQ19_002195"
     CDS             1070..1651
                     /gene="sodB"
                     /locus_tag="OQQ19_002195"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HCS1803810.1"
                     /translation="MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIK
                     GTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFG
                     SFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWE
                     HAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA"
     gene            complement(1797..2978)
                     /locus_tag="OQQ19_002196"
     CDS             complement(1797..2978)
                     /locus_tag="OQQ19_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1803811.1"
                     /translation="MKINYPLLALALALAIGAFGIGTTEFSPMGLLPVIARGVDVSIP
                     AAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLML
                     SRILTSLNHGAFFGLGSVVAASVEPKHKQASAVATMFMGLTLANIGGVPAATWLGETI
                     GWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGA
                     GAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYPGGKLADRSVNGTLKGF
                     LLLLMVIMLAIPFLARNEFGAAISMVVWGAAAFAVVPPLQMRVMRVASEAPGLSSSVN
                     IGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVAN
                     S"
     gene            complement(3144..3233)
                     /gene="ynhF"
                     /locus_tag="OQQ19_002197"
     CDS             complement(3144..3233)
                     /gene="ynhF"
                     /locus_tag="OQQ19_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein YnhF"
                     /protein_id="HCS1803812.1"
                     /translation="MSTDLKFSLVTTIIVLGLIVAVGLTAALH"
     gene            3532..4557
                     /gene="purR"
                     /locus_tag="OQQ19_002198"
     CDS             3532..4557
                     /gene="purR"
                     /locus_tag="OQQ19_002198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor PurR"
                     /protein_id="HCS1803813.1"
                     /translation="MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELH
                     YSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLE
                     KQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVID
                     NAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQ
                     GDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDN
                     VRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADG
                     PFRDYRR"
     gene            complement(4554..5486)
                     /locus_tag="OQQ19_002199"
     CDS             complement(4554..5486)
                     /locus_tag="OQQ19_002199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1803814.1"
                     /translation="MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWL
                     AVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIV
                     RPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAF
                     RDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKR
                     VVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQND
                     MSPALTWLLEYLGDSETLNKEWLREPEETPATGD"
     gene            5599..6810
                     /locus_tag="OQQ19_002200"
     CDS             5599..6810
                     /locus_tag="OQQ19_002200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family multidrug efflux MFS
                     transporter"
                     /protein_id="HCS1803815.1"
                     /translation="MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVS
                     ASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRF
                     VQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQ
                     AIFATLFAITVVLILPIFWLKPTTKAGNNSQDGLTFTDLLRSKTYRGNVLIYAACSAS
                     FFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLV
                     LFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAA
                     LQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEAGCQNH
                     GNAEVAHSESH"
     gene            7101..8249
                     /gene="cfa"
                     /locus_tag="OQQ19_002201"
     CDS             7101..8249
                     /gene="cfa"
                     /locus_tag="OQQ19_002201"
                     /EC_number="2.1.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane fatty acyl phospholipid synthase"
                     /protein_id="HCS1803816.1"
                     /translation="MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNP
                     DFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGAR
                     LFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMIC
                     EKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSMVGVTISAEQQKMAQERCEGLDVTIL
                     LQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLN
                     VDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPE
                     IADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR"
     gene            complement(8289..8930)
                     /gene="ribE"
                     /locus_tag="OQQ19_002202"
     CDS             complement(8289..8930)
                     /gene="ribE"
                     /locus_tag="OQQ19_002202"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HCS1803817.1"
                     /translation="MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAH
                     NGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGH
                     IMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVH
                     LIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA"
     gene            9145..10518
                     /gene="mdtK"
                     /locus_tag="OQQ19_002203"
     CDS             9145..10518
                     /gene="mdtK"
                     /locus_tag="OQQ19_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MATE transporter MdtK"
                     /protein_id="HCS1803818.1"
                     /translation="MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDM
                     AAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLI
                     MLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPG
                     MVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSM
                     RDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQI
                     ALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTV
                     SLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITF
                     TAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVI
                     ILQRASR"
     gene            complement(10559..11815)
                     /locus_tag="OQQ19_002204"
     CDS             complement(10559..11815)
                     /locus_tag="OQQ19_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIDA repeat-containing protein"
                     /protein_id="HCS1803819.1"
                     /translation="MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENT
                     VVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRH
                     PEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGE
                     LLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGT
                     DGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRA
                     PVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDGVTFIVGNINL
                     NGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITD
                     ASRQTLCNALKLQPDEDGIGATLQPA"
     gene            12123..12199
                     /locus_tag="OQQ19_002205"
     tRNA            12123..12199
                     /locus_tag="OQQ19_002205"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12157..12159,aa:Val,seq:gac)
     gene            12204..12280
                     /locus_tag="OQQ19_002206"
     tRNA            12204..12280
                     /locus_tag="OQQ19_002206"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12238..12240,aa:Val,seq:gac)
     gene            12388..12693
                     /locus_tag="OQQ19_002207"
     CDS             12388..12693
                     /locus_tag="OQQ19_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monooxygenase"
                     /protein_id="HCS1803820.1"
                     /translation="MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTES
                     EKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA"
     gene            12819..14423
                     /locus_tag="OQQ19_002208"
     CDS             12819..14423
                     /locus_tag="OQQ19_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-NAD(P)-binding protein"
                     /protein_id="HCS1803821.1"
                     /translation="MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPY
                     SDEENSKMMLANIASIEIPPINCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILL
                     GEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI
                     ATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFI
                     EDDKQHVVFNRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKG
                     EEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFVQAWFAERKQRDPFDWAEKNL
                     QEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPS
                     ESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKV
                     KDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTA
                     CAEIGEAMARAVVKPASRARRRLSFD"
     gene            complement(14435..15247)
                     /locus_tag="OQQ19_002209"
     CDS             complement(14435..15247)
                     /locus_tag="OQQ19_002209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803822.1"
                     /translation="MIITRADLREWRIGAVMYRWFLRHFRRGGSYADIHHALIEEGYT
                     DWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCED
                     NARIAIAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRI
                     ANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTG
                     VVDSIILGSGGSAALAYHDGERVRFAVAIEGENNIRTGVRYRLNEQHQFVEC"
     gene            complement(15251..16036)
                     /locus_tag="OQQ19_002210"
     CDS             complement(15251..16036)
                     /locus_tag="OQQ19_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate reductase cytochrome B subunit"
                     /protein_id="HCS1803823.1"
                     /translation="MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVL
                     GLHALLRARGVKKSATDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGAT
                     AVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGI
                     MQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYW
                     LLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH"
     gene            complement(16033..16701)
                     /locus_tag="OQQ19_002211"
     CDS             complement(16033..16701)
                     /locus_tag="OQQ19_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416186.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HCS1803824.1"
                     /translation="MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDES
                     RCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCID
                     VCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLA
                     KGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIK
                     KENV"
     gene            complement(16765..17403)
                     /locus_tag="OQQ19_002212"
     CDS             complement(16765..17403)
                     /locus_tag="OQQ19_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707570.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdhW family putative oxidoreductase system
                     protein"
                     /protein_id="HCS1803825.1"
                     /translation="MNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAE
                     FIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYS
                     TQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEA
                     AIAAMDVAPEYADIRQVESSTAELYLFSERFMTYGKAYGLCEWFEVEQFQNP"
     gene            complement(17416..19518)
                     /locus_tag="OQQ19_002213"
     CDS             complement(17416..19518)
                     /locus_tag="OQQ19_002213"
                     /EC_number="1.2.7.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde ferredoxin oxidoreductase"
                     /protein_id="HCS1803826.1"
                     /translation="MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDE
                     VPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQ
                     MKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCV
                     AAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKR
                     LNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPP
                     GNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGN
                     TCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYS
                     KGVFKCVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWN
                     LGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPL
                     KLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTV
                     SPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRN
                     EHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGSPTRETLQR
                     LGLEDIAADLAAHNLLPV"
     gene            complement(19488..20165)
                     /locus_tag="OQQ19_002214"
     CDS             complement(19488..20165)
                     /locus_tag="OQQ19_002214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001070231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-like protein"
                     /protein_id="HCS1803827.1"
                     /translation="MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQE
                     DIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFG
                     DNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRGIGCS
                     ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITVRILQRKKSWL
                     TVGQVIY"
BASE COUNT         5110 a         5315 c         4766 g         5220 t
ORIGIN      
        1 tcgccaacga aacgtatttt ttaacaataa aagctattaa ctttctcttc ttctatgcat
       61 tagaatcatc aagttttgta aatcagacgc aggcatgata gacctgcctt aacagaggga
      121 cgctcagtgg cgcagataaa ccgtatttcg atcacgctct gtgctttact ttttaccacc
      181 ctgcctttaa cgcctatggc ccatgcttca aagcaagcca gggagagttc tgctaccact
      241 catatcacca aaaaagcaga taaaaagaaa agcacggcaa ccaccaaaaa gacccagaaa
      301 acagcgaaaa aagccgccag taaaagtacg accaaaagca aaaccgcttc ttccgttaaa
      361 aaatcttcca ttaccgcttc taaaaacgcc aaaactcgca gcaaacacgc cgtcaataaa
      421 acggcctcag ccagctttac cgaaaagtgt accaaacgta agggctataa atcgcattgt
      481 gtgaaagtca aaaatgccgc gtcaggaact cttgccgacg cgcacaaagc gaaggtgcaa
      541 aaagctacga aagtggcaat gaataaactg atgcagcaaa ttggtaagcc atatcgttgg
      601 ggtggcagct caccgcgtac cggttttgat tgcagcggcc tggtttatta cgcttataaa
      661 gatttggtga aaattcgtat tccgcgtacg gcgaatgaaa tgtatcacct gcgtgatgca
      721 gcgccaatcg aacgtagtga actgaaaaac ggcgacctgg tctttttccg tactcaggga
      781 cgcggcacag ccgatcatgt cggcgtgtat gtcggcaacg gcaaatttat tcagtcaccg
      841 cgcacaggtc aggaaattca aatcacttct ctcagtgaag actactggca gcgccactat
      901 gttggcgctc gtcgggtaat gaccccaaaa acacttcgct aaaactttac cctgttgtta
      961 cggcaacagg gtaagttcat cttttgtctc accttttaat ttgctaccct atccatacgc
     1021 acaataaggc tattgtacgt atgcaaatta ataataaagg agagtagcaa tgtcattcga
     1081 attacctgca ctaccatatg ctaaagatgc tctggcaccg cacatttctg cggaaactat
     1141 cgagtatcac tacggcaagc atcatcagac ttatgtcact aacctgaaca acctgattaa
     1201 aggtaccgcg tttgaaggta aatcactgga agagattatt cgcagctctg aaggtggcgt
     1261 attcaacaac gcagctcagg tctggaacca tactttctac tggaactgcc tggcaccgaa
     1321 cgccggtggc gaaccgactg gaaaagtcgc tgaagctatc gccgcatctt ttggcagctt
     1381 tgccgatttc aaagcgcagt ttactgatgc agcgatcaaa aactttggtt ctggctggac
     1441 ctggctggtg aaaaacagcg atggcaaact ggctatcgtt tcaacctcta acgcgggtac
     1501 tccgctgacc accgatgcga ctccgctgct gaccgttgat gtctgggaac acgcttatta
     1561 catcgactat cgcaatgcac gtcctggcta tctggagcac ttctgggcgc tggtgaactg
     1621 ggaattcgta gcgaaaaatc tcgctgcata ataactgatg gcaaatgcag cattgcctga
     1681 tgcgcttcgt ttaccatgcc aacgcggatg aggcgttaac agcgcattcg gcaagataaa
     1741 tcgcacgttg tcagcaactg taacgcagaa ggttatcctt ctgcgttttt gtttaattag
     1801 ctgttagcaa cgcaaactgt ttcaggttgt tttctggctg acataaacac cagcaataat
     1861 gccagtcccg cgacaatcgc tcccatcacc ggcacaaagc tgtatcccag cccagcggaa
     1921 attaccgcac caccagcagc tgctcccagc gcatttccaa gattaaaggc accaatattg
     1981 actgatgaag acagacctgg cgcttcactg gcgacacgca tcacgcgcat ctgtaacggc
     2041 ggtacgaccg caaaggctgc tgcgccccac accaccatgc taatagctgc gccgaactca
     2101 ttgcgggcca ggaacgggat tgccagcata atcaccatca acaacaacaa aaagcctttc
     2161 aacgtgccgt taactgaacg atctgccagt ttgccgccgg gatagttacc gatagagaat
     2221 ccgacaccaa tcagcaccag cattgccgta acgaacaccg gtgttgcgtg ggtaatactt
     2281 tgcagtaccg gagagatata ggtgtagaga gtaaacattg caccagctcc cagtaccgtc
     2341 gtcagcaatg cagacaacac ctgcggacgc attaataccg ccagctcttt tttcacttca
     2401 ggtcgtgccc ctgcaccacc tttaggtaat gagaagaaca gacttaccat tgaaatcact
     2461 cccagccccg ccgttgccag aaatgacatc cgccagccga tggtttcacc caaccaggtc
     2521 gccgccggca cgccaccgat atttgccagg gttaacccca taaacatagt ggcaactgcg
     2581 ctggcctgtt tatgttttgg ctccacgctt gcggccacga ctgaacccaa accaaaaaat
     2641 gctccgtgat tcaggctggt caaaatgcgt gaaagcatca gggtcatata atccggcgcg
     2701 atggcggaaa gtacgttgcc gagcgtgaaa attgccatca ggaaaatcaa cgcactgcgg
     2761 cgggcacgat gagaaagtag aagcgtcatc agcggcgcgc caaccattac gccaactgca
     2821 taggcactga ttaacattcc ggcagcggga atcgagacat ccacaccgcg cgcaatgacg
     2881 ggcaacaagc ccattggcga gaactccgtt gtcccgatac caaacgcgcc aatcgccagc
     2941 gccagcgcca gcgccagcaa cggatagtta attttcatgc cttatctcca cctcttcgcg
     3001 tcattacgcg atattcatta aagtggcgaa agcatgacag caatcacaaa aaaatgaaaa
     3061 taacaaaaag agaaaacact tttgccattt tgctaacaaa caggaaggag atgcgaggga
     3121 gaacgcgctc cctcgagagg aaatcagtgc agcgcggcag tcaaacccac ggccacgatc
     3181 aaaccgagga cgataatcgt tgttaccagt gaaaatttaa ggtcggtgct catcaagttt
     3241 tctccttttt tattaccaca caaatagtga tattacgcat ttttacacac tgtgatgaaa
     3301 aaatctcccg tcatttataa tgataagtgt ttttaccact tccccttttc gtcaagatcg
     3361 gccaaaattc cacgcttaca ctatttgcgt actggccatt gaccccttcc tgacgctccg
     3421 tgtcgttttt ccggcgtacc gcaacacttt tgttgtgcgt aaggtgtgta aaggcaaacg
     3481 tttaccttgc gattttgcag gagctgaagt tagggtctgg agtgaaatgg aatggcaaca
     3541 ataaaagatg tagcgaaacg agcaaacgtt tccactacaa ctgtgtcaca cgtaatcaac
     3601 aaaacacgtt tcgtcgctga agaaacgcgc aacgccgtgt gggcagcgat taaagaatta
     3661 cactactccc ctagcgcggt ggcgcgtagc ctgaaggtta accacaccaa gtctatcggt
     3721 ttgctggcga ccagcagcga agcggcctat tttgccgaga tcattgaagc ggttgaaaaa
     3781 aattgcttcc agaaaggtta caccctgatt ctgggtaatg cgtggaacaa tcttgagaaa
     3841 cagcgggctt atctgtcgat gatggcgcaa aaacgcgtcg atggtctgct ggtgatgtgt
     3901 tctgagtacc cagagccgtt gctggcgatg ctggaagagt atcgccatat cccaatggtg
     3961 gtgatggact ggggtgaagc aaaagctgac ttcaccgatg cggtcattga taacgcgttc
     4021 gaaggcggct acatggccgg gcgttatctg attgaacgcg gtcaccgcga aatcggcgtc
     4081 atccccggcc cgctggaacg taacaccggc gcaggccgcc ttgccggttt tatgaaggcg
     4141 atggaagaag cgatgatcaa ggtgccggaa agctggattg ttcagggtga ctttgaaccc
     4201 gaatctggtt atcgcgccat gcagcaaata ctgtcgcagc cgcatcgccc tactgccgtc
     4261 ttctgtggtg gcgatatcat ggcaatgggc gcactttgtg ctgctgatga aatgggtctg
     4321 cgcgtcccgc aggatgtttc gctgatcggt tatgataacg tgcgcaacgc ccgctatttt
     4381 acgccggcgc tgaccacgat ccaccagcca aaagattcgc tgggtgaaac agcgttcaac
     4441 atgctgttgg atcgtatcgt caacaaacgt gaagaaccgc agtccattga agtgcatccg
     4501 cgcttgattg aacgccgctc cgtggctgac ggcccgttcc gcgactatcg tcgttaatca
     4561 cccgttgcgg gagtctcttc cggctcccgc agccactcct tattcagcgt ctcactatcg
     4621 ccgagatact caagcagcca ggttaacgca ggcgacatat cattttgctg ccatgtcaga
     4681 caacatgccg aatccgggaa ggggttttcc aattcaagtg ctacccactt cccctcatta
     4741 agccacggtt tggcgaaatg tgttggcacc atccctatgc ataatcctgc cgagatacag
     4801 gttgccgatg attcccagtc aggcacgaca actctttttt ggttatccag taaccaggta
     4861 atacgtttag gtagcgttcg cgaggtgtct tcgcgcacca acgacggcca gttgcgcaac
     4921 gtatcatcgc tgaatgggcc atccatcaac gccagcgggt ggtggctggc aacaacgcaa
     4981 ctccagctta gcatccccat atcccggaag gcataacgac cgcctaccgg aatcgcgcgt
     5041 gttgcgccaa tcgccagttc cacgcgcccg tcggaaagcg catcccagac accgttgaac
     5101 acttcctgaa agacaagaag ttcgacatca tcaaaatggc gataaaaatc aacgatcatc
     5161 tgccgtgtac gttctggcct gacaatatta tccactgcga tagctaactg accgcgccag
     5221 ccgttcgcta tctgctgaca ttgctggcgg gtgatctgca tttttttgac aacagagcgc
     5281 ccttctttga gaaaccacgc tccagcagcg gtcagctcca catcacggtg ccgtcgttca
     5341 aagagcggca ccgccagcca ctcttccagc tgacgcacgg tatagctgac cgcagaagga
     5401 acgcgatgca gctcctgtgc cgcagcgcta aaactaccat tacgcgctac cgcatcaaca
     5461 acttcgagtg aatattctga ccacatagtc tgcctgcaaa atttttgaaa tcagtcatca
     5521 aatattaccg tttcacaaca ctaatttcac tccctacact ttgcggcggt gtttaattga
     5581 gagatttaga gaatatacat gcaacctggg aaaagatttt tagtctggct ggcgggtttg
     5641 agcgtactcg gttttctggc aaccgatatg tatctgcctg ctttcgccgc catacaggcc
     5701 gacctgcaaa cgcctgcgtc tgctgtcagt gccagcctta gtctgttcct tgccggtttt
     5761 gccgcagccc agcttctgtg ggggccactc tccgaccgtt atggtcgtaa accggtgtta
     5821 ttaatcggcc tgacaatttt tgcgttaggt agtctgggga tgctgtgggt agaaaacgcc
     5881 gctacgctgc tggtattgcg ttttgtacag gctgtgggtg tctgcgccgc ggcggttatc
     5941 tggcaagcgt tagtgacgga ttattatcct tcacagaaag ttaaccgaat ttttgcgacc
     6001 atcatgccgc tggtgggtct atctccggcc ctggctcctc tgttaggaag ctggctgctg
     6061 gtccattttt cctggcaggc gattttcgcc accctgtttg ccattaccgt ggtgctgatt
     6121 ctgcctattt tctggctcaa acccacgacg aaggccggta acaatagtca ggatggtctg
     6181 acctttaccg acctgctacg ttctaaaacc tatcgcggca acgtgctgat atacgcggcc
     6241 tgttcagcca gtttttttgc atggctgacc ggttcaccgt tcatccttag tgaaatgggc
     6301 tacagcccgg cagttattgg tttaagttat gtcccgcaaa ctatcgcgtt tctgattggt
     6361 ggttatggct gtcgcgccgc gctgcagaaa tggcaaggca agcagttatt accgtggttg
     6421 ctggtgctgt ttgctgtcag cgtcattgcg acctgggctg cgggcttcat tagccatgtg
     6481 tcgctggtcg aaatcctgat cccattctgt gtgatggcga ttgccaatgg cgcgatctac
     6541 cctattgttg tcgcccaggc gctgcgtccc ttcccacacg caactggtcg cgccgcagcg
     6601 ttgcagaaca ctctacaact gggtctgtgc ttcctcgcaa gtctggtagt ttcctggctt
     6661 attagtatca gcacgccatt gctcaccacc accagcgtga tgttatcaac agtagtgctg
     6721 gtcgcgctgg gttacatgat gcaacgttgt gaagaagctg gctgccagaa tcatggcaat
     6781 gccgaagtcg ctcatagcga atcacactga tctatatcga tatacttata cttaggctgc
     6841 taacaaaatt ttgttgtatg attgaaatta gcggcctata ctaatttcga gttgttaaag
     6901 ctacgataaa tattatgttt ttacggggac aggatcgttc ccgactcact atggatggtc
     6961 atttcggcaa gggttcctcc tttccctctg ttctacgtcg gattatagac tcgcggtttt
     7021 ttctgcgaga tttctcacaa agcccaaaaa gcgtctacgc tgttttaagg ttctgatcac
     7081 cgaccagtga tggagaaact atgagttcat cgtgtataga agaagtcagc gtaccggatg
     7141 acaactggta ccgtatcgcc aacgaattac ttagccgtgc cggtatagcc attaacggtt
     7201 ctgccccggc ggatattcgt gtgaaaaacc ccgatttttt taaacgcgtt ctgcaagaag
     7261 gctctttggg gttaggcgaa agttatatgg atggctggtg ggaatgtgac cgactggata
     7321 tgttttttag caaagtctta cgcgcaggtc tcgagaacca actcccccat catttcaaag
     7381 acacgctgcg tattgccggc gctcgtctct tcaatctgca gagtaaaaaa cgtgcctgga
     7441 tagtcggcaa agagcattac gatttgggta atgacttgtt cagccgcatg cttgatccct
     7501 tcatgcaata ttcctgcgct tactggaaag atgccgataa tctggaatct gcccagcagg
     7561 cgaagctcaa aatgatttgt gaaaaattgc agttaaaacc agggatgcgc gtactggata
     7621 ttggctgcgg ctggggcgga ctggcacact acatggcatc taattatgac gtaagcatgg
     7681 tgggcgtcac catttctgcc gaacagcaaa aaatggctca ggaacgctgt gaaggcctgg
     7741 atgtcaccat tttgctgcaa gattatcgtg acctgaacga ccagtttgat cgtattgttt
     7801 ctgtggggat gttcgagcac gtcggaccga aaaattacga tacctatttt gcggtggtgg
     7861 atcgtaattt gaaaccggaa ggcatattcc tgctccatac tatcggttcg aaaaaaaccg
     7921 atctgaatgt tgatccctgg attaataaat atatttttcc gaacggttgc ctgccctctg
     7981 tacgccagat tgctcagtcc agcgaacccc actttgtgat ggaagactgg cataacttcg
     8041 gtgctgatta cgatactacg ttgatggcgt ggtatgaacg attcctcgcc gcatggccag
     8101 aaattgcgga taactacagt gaacgcttta aacggatgtt tacctattat ctgaatgcct
     8161 gcgcaggtgc tttccgcgcc cgtgatattc agctctggca ggtcgtgttc tcacgcggtg
     8221 ttgaaaacgg ccttcgagtc gctcgctaaa ggctattcta tcgccccctc tccgggggcg
     8281 atttcagatc aggcttctgt acctggttga ttcatggcat tttctcgtgc cgccagcaca
     8341 cgttctaccg tatctaccac tgcctgagtt tgtggatcaa tttcaatgtt gacgcgtgcg
     8401 ccgagttttt tcttcccaag agtcgtgcgt tccagagttt ccggaattaa atggacgcaa
     8461 aaacgcgttg gcgtgacttc gccgacggtc aggctaatac cgtcgatgcc aataaatcct
     8521 ttgtacagga tatatttcat caactgacta tcctggactt taaaccagat ctggcgatta
     8581 ttttccgagg ttaatatttt cgccacttca gcggtggtca taatatgacc tgacattaag
     8641 tgtccgccaa tttcatcact gaatttcgcc gcacgctcaa cgtttaccca atcccccact
     8701 tttaaatcgc caagattggt aatgcgtaac gtttctttca tcaggtcaaa actgacatgg
     8761 ttgccgttaa tttccgtcac ggtcaggcag caaccgttat gcgccacgga agcaccggtt
     8821 tccaggccgt ccagcatgtg gtcgggtaac tccaccacat gcgtacgaaa atttggtttc
     8881 tcgtcaatcg acaccagttt tgcggtgccc tgtacaatcc ccgtaaacat acttacaact
     8941 cctgaaatca gttaagacat tctgttcagc acaatagcag gtggcaaacg cccttaccag
     9001 tgaaggggta agaatgacta ttttttcact ggagaattaa taaatcctcg ctacaataga
     9061 ctgaatttcc cctgcttctt ctttttgctg cccattcagg cggcttttta gtctctcata
     9121 taactacaaa taaaaggtgt tcacgtgcag aagtatatca gtgaagcgcg tctgttatta
     9181 gcattagcaa tcccggtgat tctcgcgcaa atcgcccaaa ctgcgatggg ttttgtcgat
     9241 accgtgatgg cgggcggcta tagtgccacc gacatggcgg cggtcgctat cggtacttct
     9301 atctggcttc cggcgatcct ctttggtcac ggactgctgc tggcattaac gccggttatc
     9361 gcgcaattaa atggttccgg tcgacgtgag cgcattgcgc atcaggtgcg acaaggtttc
     9421 tggctggcag gttttgtttc cgttctcatt atgctggtgc tgtggaatgc aggttacatt
     9481 atccgctcca tggaaaacat cgatccggct ctggcggaca aagccgtggg ttatctgcgt
     9541 gcgttgttgt ggggcgcgcc gggctatctg ttcttccagg ttgcccgtaa ccaatgtgaa
     9601 ggtctggcaa aaaccaagcc gggtatggta atgggcttta tcggcctgct ggtgaacatt
     9661 ccggtgaact atatctttat ttatggtcat ttcggtatgc ctgagctcgg tggcgttggt
     9721 tgtggcgtgg ctactgcggc ggtgtattgg gtcatgttcc ttgccatggt ttcttacatt
     9781 aaacgcgccc gctccatgcg cgatattcgt aacgaaaaag gcaccgcgaa acccgatcct
     9841 gcggttatga aacgactgat tcaactcggt ttaccgattg cgctggcact attctttgaa
     9901 gtgacactgt ttgccgtcgt ggctctgtta gtgtctccgc tcggtattgt tgatgtcgca
     9961 ggacaccaga ttgccctgaa ctttagttca ctgatgtttg tgcttccaat gtcgctggcg
    10021 gcagcggtaa ctatccgcgt aggttatcgt ctgggtcagg gctcaacgct ggatgcgcaa
    10081 accgctgcgc ggaccgggct tatggtgggt gtctgtatgg caaccctgac ggccattttc
    10141 acggtttcac tccgggagca aatcgccctg ttgtacaacg acaatcccga ggttgtaacg
    10201 ctggctgcgc atttgatgtt gctggcggcg gtatatcaga tttctgactc aatccaggtg
    10261 attggcagtg ggattttgcg tggttataaa gatacgcgtt ccattttcta tatcaccttt
    10321 acagcttact gggtgctggg cttgccaagc ggctatattc tggcactgac cgatctggtc
    10381 gttgaaccta tggggccagc aggcttctgg ataggcttta ttatcggcct gacatcggca
    10441 gccattatga tgatgttgcg tatgcggttc ctgcaacgtc tgccgtcagt tatcattctg
    10501 caacgagcat cccgctaata aagacaaggc gcaaccttca cgggttgcgc ctgtgttttt
    10561 acgcaggctg gagcgttgcg ccaatcccgt cttcgtctgg ctgtaatttc agagcgttgc
    10621 acagagtttg ccgactggca tctgttatct caacgtgtat atcaccggta acttcccctt
    10681 tcacattgat gaagtcaggt gagatttctt tcgcactggt ttgcaggcaa atcgctccct
    10741 ctccgcgcag gcgtttcact ttcagttgca catgcgttgc cgcaccagtg atcagccaca
    10801 gttttccgcc attcagattg atgttaccaa caataaaagt gacaccgtca ccttttaccg
    10861 tactgccgtc gagaatcaac acaccgccct gctgtacagt aatcgttgat tgttgcagat
    10921 ctgcgccata gccaataatc attgaagcgc cgtccagtaa tgcaacactc ccggtcagtt
    10981 caaccggtgc gcgatcttcc tctacgacaa aattttcgtc cgcgctggtg ggtgacaaca
    11041 ggatcactgt tccaccttgt attaccgcat tttccagcgt accggcatgc acttcagccc
    11101 gaccacccac attcacggac aggttttgcg tcttaccgga actgtagagc tgaaggccat
    11161 ccgtccccag acgataaatg gatccattct caacaatggt gtcagagtct tcaccaccga
    11221 gattattcat ggtgccacca gcaagcaacg tatcactggc tttcccggcc agcataaaaa
    11281 cgccgccctg attaatctca caattgctgg cttccccacc tggatacacc aacaattcac
    11341 caccttcatc taccacgacc gctgaggttg tcccattaac caacaggccg ccctcttgat
    11401 cgagaatgat tttttccgcg cgatgtcctt ccagtacacg caggttaccg ccattttcca
    11461 gcaacaaacc gcaggcataa ccctgatcaa cgctgaattc accttcggga tggcggccat
    11521 taaccgtagc gagcgtagag agactaattg cgcctccctc ggactgaaca atatctgtgg
    11581 caatggcacc gtcgctgacc gatagcgtgc cattgttacc gtactgtgtg catttggcga
    11641 tcccaccggt tgccactttc aaccagccag cccccgtgac tacggtattt tcggctcttc
    11701 cgccagcttc aacaatcaac tcgccttcag taagttgcgt cgcgccaatg acctcgccgg
    11761 tcttaacaat ttgcacattc ccgtcgctca tcaagttttt cgcatcagat cccatgattt
    11821 attcctttgc tgcatctgtg tgcctttatt gctacctaaa tgtaaaggct acggaggatt
    11881 tatccacgac agatttgaga tggtggcaaa caactctgtt taaactctga tacacgaatt
    11941 attgggttgt atcagatgta aatgcgatcc tgaataaaaa tcgcccttgc aaatcaacaa
    12001 aatatagcca atttgcttaa aagctctgca aacggtcgaa atagcgcaga aaattacgtt
    12061 ttgcctcttg ccaccttccc actctgccgc taatattcgt ccccgttgtc acctacaacg
    12121 ttgcgttcat agctcagttg gttagagcac caccttgaca tggtgggggt cgttggttcg
    12181 agtccaattg aacgcaccat cctgcgtccg tagctcagtt ggttagagca ccaccttgac
    12241 atggtggggg tcggtggttc gagtccactc ggacgcacca gattttctta atctggtctt
    12301 ctcctttttc cctctgtttc ttctctgtat ccaatacgtt aaaagattta cactgtcttc
    12361 gtatgcgtta tcagaaggag aatcgctatg gcaactttgt tacaacttca ttttgctttt
    12421 aatggcccat ttggcgacgc aatggctgag cagcttaaac cgcttgctga gtcgattaat
    12481 caggaacctg gttttctgtg gaaggtatgg acagaaagtg aaaagaacca cgaagccggt
    12541 gggatctatc tttttactga tgaaaaaagc gcccttgcct atctggaaaa acatactgcc
    12601 cgacttaaaa atctcggcgt tgaggaagtt gtcgccaaag ttttcgatgt caatgagcca
    12661 ctgagtcaaa tcaatcaggc aaaactcgcc tgacagaatt taatcaaggg cggttagcgc
    12721 ccttttcatc cctgtctgaa atttctcaaa ttctaaaaat ctcaaccaaa cttatctgat
    12781 aacactaaat tcgaaagaat gcgtacaggt aagtaacaat gaaaaaaatt gctattgtgg
    12841 gtgccgggcc tacggggatc tacaccttat tctcgcttct acagcaacaa actccacttt
    12901 ctatttctat cttcgagcag gctgacgagg ccggtgtcgg gatgccatac agtgatgagg
    12961 aaaactcaaa aatgatgctg gcaaatattg ccagtattga aataccgccg attaattgta
    13021 cgtatctcga atggctacaa aagcaagaag ccagccatct ccagcgttat ggcgttaaaa
    13081 aagaaacctt gcacgatcgt cagtttttac cgcgaattct gctgggcgaa tatttccgcg
    13141 atcaattttt acgattagta gaccaggcac gacagcaaaa atttgcagtg gctgtttatg
    13201 aatcatgcca ggttaccgat ctgcaaatta caaatgctgg cgtcatgctc gctacaaatc
    13261 aggatttacc cagcgagacg tttgatttag cggtgattgc cacgggtcac gtctggcctg
    13321 atgaagaaga agcaaccaga acgtattttc ccagtccgtg gtcaggcctg atggaagcaa
    13381 aggtcgatgc gtgtaacgtg ggtattatgg gaacatcctt gagcggactg gatgcggcaa
    13441 tggcagtggc tattcagcat ggttcgttca ttgaagatga taaacaacac gtcgttttta
    13501 accgcgataa cgcaagtgaa aagctaaata ttacgttgat gtcgcgcacg ggtattttac
    13561 ccgaagccga tttctattgc cctattccct acgagccctt acacatcgtc accgatcagg
    13621 cattaaatgc tgagattcaa aaaggtgaag agggcctttt ggatcgggta tttagattga
    13681 tagtagagga aatcaagttt gctgatccag actggagcca acgcatagcc ttagagagcc
    13741 tgaatgtcga ttcctttgtt caagcctggt ttgccgagcg caaacaacgc gacccatttg
    13801 actgggcaga aaaaaatctc caggaagtcg aacgcaataa acgagaaaaa catactgttc
    13861 cctggcgtta tgtcattctg cgcctgcatg aagccgtaca ggaaattgtt ccacatctga
    13921 atgaacacga ccataaacgg ttcagtaaag gccttgcccg ggtttttatc gataattatg
    13981 cggcaatccc ttcagagtct attcgtcggc tgctggcctt acgtgaagcg gggatcattc
    14041 atattctcgc cctcggtgaa gactacgaaa tggaaattaa tgagtcgcgc accgtcctga
    14101 aaacggaaga caacagctac tcgtttgacg tttttattga tgcccgcgga cagcgtccgc
    14161 ttaaagtgaa agatattcct ttccctgggc tacgcgagca attacagaaa acaggggatg
    14221 aaatccctga tgttggcgaa gattatacgt tacagcaacc cgaagatatt cgtggacgcg
    14281 tagcgttcgg cgcgttgccc tggttgatgc acgaccagcc tttcgttcag ggacttacgg
    14341 catgtgcaga aattggtgag gcgatggctc gggcggtcgt aaaacctgca tcccgtgcac
    14401 gtcggcgtct ttcgtttgat taaaggtaaa gctatcagca ctcaacaaac tgatgctgtt
    14461 cattaagacg atagcggact ccggttcgaa tattgttttc accttcaatg gcgacggcga
    14521 agcgaactct ttcgccgtca tgatatgcca gtgcggcgct tccccctgac ccgagaataa
    14581 ttgagtcgac cacgcccgtg ctcactaccg ttgaattttc accgctggca atgatgtgta
    14641 cattgtcgcc gctgttggca attctggcgt ttgcgccaaa gctggcgatt tgcaccaggt
    14701 caccattact ggcgacatga caccgttcac ccaatgtaca aacgcgtact cgcattccgg
    14761 tattcgcaat ccgactacta tctccagcgc tgcttatccg cgaagaatta ccggttacag
    14821 caacccgtgc gcgttcaccg gagctgccaa tgtgactgtt aaagccgaca cttccaatcc
    14881 gcacgctata acccatactg gcaatttgcg cggcataccc agcgattgcg attcgggcgt
    14941 tatcctcaca acagccgatg cgagcatgat cgtcgctgcg ggcaaactga ctgcaaaatg
    15001 gtatctctcc ggggtctgtg gccagttttt gcatagagga aacttcctga tgcgcgaagt
    15061 tttcatccgc cagccatttt ttccacgcat actcaaccag actctccgcc cagtccgtat
    15121 atccttcctc aatcagtgca tgatgaatat cggcataact accgccgcgt cggaaatggc
    15181 gcaggaacca gcgatacatc accgctccga tacgccattc tcgcaggtct gctcgtgtaa
    15241 tgatcattcg ttagtgccgg tgatagccat cgaccatgct tttaaaggtt tcgtgtggcg
    15301 tacgccccgt ggtgcaaaga taaagatgtc cgaagataaa aaagaggctt ataaatgcca
    15361 gagcaaaatg cgcctgcaat aaccagtatc ttacgccagg aaacacatct cccacggctt
    15421 gcggatagag acacaacagc cccgtcaata gtaacaacgg cagcaatcca tacatgacac
    15481 caacataggc gacctgctgt aagggattaa atttagactg tgttgttgcc gggaaaggat
    15541 gttcttcccc ctgcataatg ccaaacaaat aaaatcgcgt ttgttttgcc gctcgttcca
    15601 gccacccctg acgacgaatg cgatagtggt gaccattatc cccaacggca ttgatcagca
    15661 caaagccgag ccagcatgcc agtaacaaaa atccgcaaac ttcatgcacc gcaaccagac
    15721 ttttaaccgc agttgcgccc accatcgcaa agtgatttat cagcccactt gccagcaaca
    15781 atacaaagag taacgcattc gaccagtgcc ataatctgac cgctttgctg taaagataaa
    15841 ccttctcacc atgatcggtg gctgatttct tcacgccacg agcacgaagc aaggcgtgca
    15901 gccccagcac caaccacatc ccaaccagca atactccggc aatgatcaac cacaccggcc
    15961 aaaattcggg agtgaactgt ggcacatagt tcgctaactg gctctgaaac tgttcagcat
    16021 gttgcgacgg gttcatacat tttccttttt aatcaaatgt tgaccgaacc ggcgatacag
    16081 atgcggtttc ccggcaccag gtagctgata ttgatagtat ttattatcct gcaaccacgc
    16141 ctgaatttct gggctatctt cgcgaccaaa gatcaatgcg tgttccggac aggcgctgac
    16201 gcaaatgggc ggaaagcctt ttgccagtcg ggactcagcg cagaaatcac atttatctgc
    16261 cactttagtg acagggttaa ggtagcgaac ctggtacgga caagcgccaa tgcaataact
    16321 gcagccgatg cactgcgatt tttctacccg cacgatcccc tgctcatcac gccacgatgc
    16381 ccccgtcggg caaacgtcga tgcacggagc atcttcgcag tgctgacatg actggcgaaa
    16441 aaagtgatac tgcgtttcgt tgtcgttatc ggtgactgga atgtgtgcta tcgataaacg
    16501 gcttccctga gcggggacgt ggttagtttt acggcatgcg cgggcgcaaa tattacagcc
    16561 attgcaccgt gactcgtcat gaatcatggc ataccgaact tccttttctt gcctcgtgtt
    16621 cgctaacaga gaagacgcag aaccagtaaa aaagattact gttcccatcc ccagaacaaa
    16681 tttgcgtcga gtgaaggaca tctgattatc ccctaatgca gtggctgcaa ctgtccaccc
    16741 tatccatgac atctccctga aatttcaggg gttctgaaac tgctctacct cgaaccattc
    16801 gcataagcca taagccttgc cataggtcat aaatcgctca ctaaacaagt acaactccgc
    16861 cgtcgatgac tccacctgcc gtatatcggc atattcaggt gcaacatcca tcgcggcgat
    16921 cgcggcttca atctgcgctt cctggaagta atatggcgct tgcatcagca tggcgacttt
    16981 gtaaggacga ggatatgtct ggcactcaaa acgaacggcg tgtgcaatgg cgcgacaaat
    17041 gtcctgctcc acaacttgca aagacatcgc cgcgtagttt tcactcatgg cctgcgttga
    17101 gtaatagtaa tcatcctggc ttcccgtcat acaagcgata tcagcgtagt ctccgttctg
    17161 cttaatgctt tccagcaaaa ctgacagctc ctcttctgca accgaatagg gtggcgagag
    17221 aaacacggcg cgcgccacca gctgcccagc cgcagaatgc tggcgaatga actctgccag
    17281 gatttcagcc ggttctggtt cggttaccgt atcaacgggg tgacgcatcc cctgtaacca
    17341 ttgccgcttc gcctcgtcaa cttcgctgac tttcgctaac ggcaattcat cccgatggtt
    17401 catctcaccc attccttaca caggcagtag attgtgtgct gccagatcgg cggcaatatc
    17461 ttccagcccc agacgctgca atgtttcgcg ggtgggacta ccaagctgtg ggtcccagcc
    17521 catttctttg tagaacatcg tgagcgaagc atgcatatcg tcacgatcca ttttgtcagt
    17581 accttcagta aagaccggga tctgcggatc cttgtcgaat acccaggaac agataagatc
    17641 gtgttcatta cgcatatctt tggtttgcat aagttttacc gtgtaggcac gatgcaacgt
    17701 aaagatacgc tctgcagcta aatctaattt ttcctgagtc atctcttcgc cggtgatcgc
    17761 tttgaagaat ttggcttcaa gcgccagatc gccccggtaa ttacggcttt tcagcggcga
    17821 aacggtcatt ggccagaccc agttacacag ggtgacggcg ttatgcaaac agacccgcaa
    17881 cagcgaccac ttagcatatt taatttttgc gtcattgatt ggcgtgtagt ttttggtttc
    17941 atcgtaggca tcttcagaac caaaaagctc tttcgccact tcacgttgca gtttcaatgg
    18001 caagccggaa ccaataaagt tgatatgggt atgtgtcatg cagtcacggt tgaacataca
    18061 gttaacaatg gaaccgacct gcgctgacgc ttcattggca tggtgaaccg gatagccaaa
    18121 cggcgaccag agtttatttt tcgcgtagcc ccagtactct tcacccaaat tccagcgttc
    18181 tgcgatggca tatgaaccat cagccaggtg actcagctca cccacacgat gcgccagacg
    18241 gtagtaaaaa tctttaatga aattaacgtc acccgcttcc agttgatccc agtgaatttc
    18301 cgcatactct tcagcaggca gaacacactt gaacacccct ttgctgtaac aataagtaaa
    18361 gtcgcgatgc aactgcccgt agttacacca taggccgtag tcatcgaaca aattcagacc
    18421 aaccaagtta ccaatcacac ggccatcgtc tttatcttca aaatctttcg gaccgttcgg
    18481 gaagatggtg gtatggacaa agttggctac acaagtgtta ccacctgtgc tgggcacgcc
    18541 aaactctttc acccgaggaa tattcatttg ggtcatacaa cggatcgggc aagagtggca
    18601 gccactcatt tttactgtgt atttctctgc cgccggacct aagtcaaaaa cggatttata
    18661 ggtacgaaag ccgaccgtgt tctgattgcc tggcggaatt tcccccgttt caatcggacc
    18721 accttcagcc gcgccccaaa acagcccttt acgtgctgtc caacgtgact tgggatctga
    18781 atactctgcc cacgattgcg gcgtacttgg cacgacatgg ttgttattcg caccaataag
    18841 ttcagtcatc atgtaatcgt tgagacgctt catctcctga cgatcggcaa tgttgacccc
    18901 tttcgtccct tcaaccgcaa tcgctttcag gtttttcgaa cccataattg cgccagttcc
    18961 cgcaccgccg ctgtggttac ggctattcaa catgccagag agaggaacaa ggttttcccc
    19021 agcctggcca atagccgcca cacaggtttc cggactggtc aatcgacaaa tttcttccgt
    19081 cgttgcgcgc gtcccttttc cccataagaa atcggctttt tccaggctaa ctttgtcatc
    19141 tttaatcttc agccataccg gtgatttcgc cttcccttcg ataataatga cgtcgtatcc
    19201 agcgaatttc atttgcgctg caaaaaagcc acccatatgg gcatcgacaa ctaaatttcc
    19261 tttggtaaaa gtagaaagtg aggtgatatt tacgcgagaa ctacaggggg caccagatcc
    19321 agttaatggg ccggtagcaa agactaattt attcgcttca tcgaaaggtt tcgtgcctgg
    19381 cggtacttcg tcatacataa ttttgtagcc gaagcccatg ccaccgacaa aacttttaaa
    19441 cttactggaa tcttcgaggg taatatttcc tgtcgtgaga ttgactctta atatattacc
    19501 tgtccaaccg ttagccatga ttttttcctt tgcaagattc tcacagtaat atctttccac
    19561 tcgataattt ttaacgcccc tgttgggcag gcgtttgcac attcaccgca taacacacat
    19621 ttcgaggatt ttttactttc ggtatttacg gtggccatca tccacgggca tgccgtagta
    19681 caggcgctac agccaatacc gcgtttatga tcgacggtaa tacagccttc tttctgctgc
    19741 caggtaatcg caccaatcgg gcagacgttc atgcattgcg gctctttgca ttgacggcag
    19801 gtgtccgcgg tatagttgag atcgccatac aggccgccgc cagagccaac cccgttgtcg
    19861 ccaaagaaat aattgcgatg gattttgata cgggagaaga atgtccctac tgagccatcg
    19921 ttgaagttgg tacaagagat ttcacagcgg tggcaacccg tgcatcgcgc tcgctgggtc
    19981 accagcaccc ctttgggtgt atttatcaac cctactgtgc cgctatcaat atcttcctgt
    20041 ttgcaaccca aaagtgacag taacgcaggg gcaattgtta gaccagcaag gccttttcct
    20101 gatatacgca agaattctaa tcgcgttaag ccaatatcta atagtggacg atcaaccggg
    20161 ttcatttatt tcgcatcctc ttcgcaaaca cagtgctgac aattcagcag cctgatatta
    20221 agcattcaat taatacgctg ctgactctgt ccccaacacc agatattttc cctaacccga
    20281 tagtgtatga gaaaagattt aacgccgata aactaatcct ttatggttag gagaaaaaat
    20341 aatgtgatta ttctgagccc ttaacattga tcgttatcaa ttaaaattac aaagcaagaa
    20401 attataagtg a
//
LOCUS       DAJVSY010000069        20113 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.069, whole genome shotgun sequence.
ACCESSION   DAJVSY010000069 DAJVSY010000000
VERSION     DAJVSY010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20113)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20113)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20113
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.069"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..1985
                     /locus_tag="OQQ19_002215"
     CDS             <1..1985
                     /locus_tag="OQQ19_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="catecholate siderophore receptor Fiu"
                     /protein_id="HCS1803828.1"
                     /translation="VGAFLAGENGNSTTGDAIYMRGADTSNSIYIDGIRDIGSVSRDT
                     FNTEQVEVIKGPSGTDYGHSAPTGSINMISKQPRNDSGIDASASIGSAWFRRGTLDVN
                     QVIGDTTAVRLNVMGEKTHDAGRDKVKNERYGVAPSVAFGLGTANRLYLNYLHVTQHN
                     TPDGGIPTIGLPGYSAPSAGTAALNHSGKVDTHNFYGTDSDYDDSTTDTATMRFEHDI
                     NDNTTIRNTTRWSRVKQDYLMTAIMGGASNITQPTSDVNSWTWSRTANTKDVSNKILT
                     NQTNLTSTFYTGSIGHDVSTGVEFTRETQTNYGVNPVTLPAVNIYHPDSSIHPGGLTR
                     NGANANGQTDTFAIYAFDTLQITRDFELNGGIRLDNYHTEYDSATACGGSGRGAITCP
                     AGVAKGSPVTTVDTAKSGNLVNWKAGALYHLTENGNVYINYAVSQQPPGGNNFALAQS
                     GSGNSANRTDFKPQKANTSEIGTKWQVLDKRLLLTAALFRTDIENEVEQNDDGTYSQY
                     GKKRVEGYEISVAGNITPAWQVIGGYTQQKATIKNGKDVAQDGSSSLPYTPEHAFTLW
                     SQYQATDDISVGAGARYIGSMHKGSDGAVGTPAFTEGYWVADAKLGYRVNRNLDFQLN
                     VYNLFDTDYVASINKSGYRYHPGKPRTFLLTANMHF"
     gene            2027..2704
                     /gene="ybiX"
                     /locus_tag="OQQ19_002216"
     CDS             2027..2704
                     /gene="ybiX"
                     /locus_tag="OQQ19_002216"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKHD-type hydroxylase YbiX"
                     /protein_id="HCS1803829.1"
                     /translation="MMYHIPGVLSPQDVARFREQLEQAEWVDGRVTTGAQGAQVKNNQ
                     QVDTRSTLYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVR
                     SHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCV
                     TPVTRGVRVASFMWIQSMIRDDKKRAMLFELDKNIQSLKSRYGENEEILSLLNLYHNL
                     LREWSEI"
     gene            2778..3044
                     /gene="ybiI"
                     /locus_tag="OQQ19_002217"
                     /pseudo
     CDS             2778..3044
                     /gene="ybiI"
                     /locus_tag="OQQ19_002217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308908.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-type zinc finger protein YbiI"
     gene            3309..3569
                     /locus_tag="OQQ19_002218"
     CDS             3309..3569
                     /locus_tag="OQQ19_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS1803830.1"
                     /translation="MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADG
                     ASTLDALEAKLTEKAAAAGASGYSITSATNNNKLSGTAVIYK"
     gene            complement(3797..4882)
                     /gene="hcxB"
                     /locus_tag="OQQ19_002219"
     CDS             complement(3797..4882)
                     /gene="hcxB"
                     /locus_tag="OQQ19_002219"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxycarboxylate dehydrogenase HcXB"
                     /protein_id="HCS1803831.1"
                     /translation="MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAG
                     HDSHGIGMIPSYVRSWSQGHLQINHHAKIVKEAGAAVTLDGDRAFGQVAAHEAMALGI
                     EKAHQHGIAAVALHNSHHIGRIGYWAEQCAAAGFVSIHFVSVVGIPMVAPFHGRDSRF
                     GTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPA
                     VMQESPLGSLLTFAEHKGYALAAMCEILGGALSGGKTTHQETLQTSPDAILNCMTTII
                     INPELFGAPDCSAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQEQGIPLDAGS
                     WQAICDAARQIGMSEETLQAFCQQLAS"
     gene            complement(5023..5985)
                     /gene="ybiB"
                     /locus_tag="OQQ19_002220"
     CDS             complement(5023..5985)
                     /gene="ybiB"
                     /locus_tag="OQQ19_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein YbiB"
                     /protein_id="HCS1803832.1"
                     /translation="MDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGG
                     VLIALRIKGEGEAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLA
                     ILLHKLGFPVVVHGVSEDPTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGA
                     FCPPLEKQLAMRWRMGVRNSAHTLAKLATPFAEGEALRLSSVSHPEYIGRVAKFFSDI
                     GGRALLMHGTEGEVYANPQRCPQINLIDREGMRVLYEKQDTAGSELLPQAKDPETTAQ
                     WIERCLAGSEPIPESLKIQMACCLEATGEAATISDGLARVNQAF"
     gene            complement(6013..8163)
                     /gene="dinG"
                     /locus_tag="OQQ19_002221"
     CDS             complement(6013..8163)
                     /gene="dinG"
                     /locus_tag="OQQ19_002221"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase DinG"
                     /protein_id="HCS1803833.1"
                     /translation="MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG
                     EEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK
                     IIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLK
                     GDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAE
                     VVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL
                     DLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEVEH
                     RFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRA
                     LGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR
                     SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRFE
                     PSIDNEEQHIAEMAAFFREQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGD
                     QPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVI
                     TEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR
                     LLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR"
     gene            8283..8765
                     /gene="ybiA"
                     /locus_tag="OQQ19_002222"
     CDS             8283..8765
                     /gene="ybiA"
                     /locus_tag="OQQ19_002222"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-glycosidase YbiA"
                     /protein_id="HCS1803834.1"
                     /translation="MPVRAQRIQHVMQDTIINFYSTSDDYGDFSNFAAWPIKVDGKTW
                     PTSEHYFQAQKFLDEKYREEIRRVSSPMVAARMGRNRSKPLRKNWESVKEQVMRKALR
                     AKFEQHAELRALLLATAPAKLVEHTENDAYWGDGGNGKGKNRLGYLLMELREQLAIEK
                     "
     gene            complement(8997..10361)
                     /gene="rhlE"
                     /locus_tag="OQQ19_002223"
     CDS             complement(8997..10361)
                     /gene="rhlE"
                     /locus_tag="OQQ19_002223"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlE"
                     /protein_id="HCS1803835.1"
                     /translation="MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMAS
                     AQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL
                     NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR
                     MLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASD
                     QVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIH
                     GNKSQGARTRALADFKSSDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIG
                     RTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQ
                     QRGGGGRGQGGGRGQQQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPRKP
                     AAAQ"
     gene            10590..11261
                     /gene="cecR"
                     /locus_tag="OQQ19_002224"
     CDS             10590..11261
                     /gene="cecR"
                     /locus_tag="OQQ19_002224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415317.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CecR"
                     /protein_id="HCS1803836.1"
                     /translation="MNNPAMTIKGEQAKKQLIAAALAQFGEYGMNTTTREIAAQAGQN
                     IAAITYYFGSKEDLYLACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRA
                     CRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDA
                     NDTRMILHTHALIGEILAFRLGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGL
                     SQRSL"
     gene            11264..12259
                     /gene="hlyD"
                     /locus_tag="OQQ19_002225"
     CDS             11264..12259
                     /gene="hlyD"
                     /locus_tag="OQQ19_002225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308900.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secretion protein HlyD"
                     /protein_id="HCS1803837.1"
                     /translation="MKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLKLYGNVDIRTV
                     NLSFRVGGRVESLAVDEGDAIKAGQVLGELDHKPYEIALMQVKAGVSVAQAQYDLMLA
                     GYRDEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQAT
                     LKSAQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRA
                     VEPGTVLNEGGTVFTVSLTRPVWVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQI
                     GFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQGMPVTVQFGNEAGHE"
     gene            12252..13988
                     /locus_tag="OQQ19_002226"
     CDS             12252..13988
                     /locus_tag="OQQ19_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308899.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1803838.1"
                     /translation="MNDAVITLNGLEKRFPGMGKPAVAPLDCTIHAGYVTGLVGPDGA
                     GKTTLMRMLAGLLKPDSGNATMIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLN
                     LYADLRSVTGEARKQTFARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVL
                     LLDEPGVGVDPISRRELWQMVHELASEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQ
                     GEPKALTQTMAGRSFLMTSPHEGNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPD
                     DIRHADGMPEININETTPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKE
                     LTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMD
                     LKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGL
                     KSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVE
                     KGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTMEQAFIQ
                     LIHDWDKEHSNE"
     gene            13981..15114
                     /locus_tag="OQQ19_002227"
     CDS             13981..15114
                     /locus_tag="OQQ19_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1803839.1"
                     /translation="MSNPILSWRRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFG
                     YGINLDSSKLRVGILLEQRSEAALDFTHTMTGSPYIDATISDNRQELIAKMQAGKIRG
                     LVVIPVDFAEQMERANATAPIQVITDGSEPNTANFVQGYVEGIWQIWQMQRAEDNGQT
                     FEPLIDVQTRYWFNPAAISQHFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLS
                     TEITRTELLLCKLIPYYFLGMLAMLLCMLVSVFILGVPYRGSLLILFFISSLFLLSTL
                     GMGLLISTITRNQFNAAQVALNAAFLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFV
                     STLQSLFLAGNIPVVLVVNVLFLIASAVMFIGLTWLKTKRRLD"
     gene            15125..16231
                     /locus_tag="OQQ19_002228"
     CDS             15125..16231
                     /locus_tag="OQQ19_002228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1803840.1"
                     /translation="MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLE
                     VTNATIAIYDEDNGEHSVELTQRFARASAFTHVLLLKSPQEIRPTIDTQKALLLVRFP
                     ADFSRKLDTFQTAPLQLILDGRNSNSAQIATNYLQQIVKNYQQELLEGKPKPNNSELV
                     VRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQI
                     FIGKAVPALIVATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISS
                     LCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINPIRHFTDITKQIYLK
                     DASLDIVWNSLWPLLVITATTGSAAYAMFRRKVM"
     gene            complement(16193..16603)
                     /locus_tag="OQQ19_002229"
     CDS             complement(16193..16603)
                     /locus_tag="OQQ19_002229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhQ family protein"
                     /protein_id="HCS1803841.1"
                     /translation="MKWQQRVRVATGLSCWQIMLHLLVVALLVVGWMSKTLVHVGVGL
                     CALYCVTVVMMLVFQRHPEQRWREVADVLEELTTTWYFGAALIVLWLLSRVLENNFLL
                     AIAGLAILAGPAVVSLLAKDKKLHHLTSKHRVRR"
     gene            16736..17487
                     /locus_tag="OQQ19_002230"
                     /pseudo
     CDS             16736..17487
                     /locus_tag="OQQ19_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308895.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
     gene            17484..18725
                     /gene="clsB"
                     /locus_tag="OQQ19_002231"
     CDS             17484..18725
                     /gene="clsB"
                     /locus_tag="OQQ19_002231"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase ClsB"
                     /protein_id="HCS1803842.1"
                     /translation="MKCSWREGNKIQLLENGEQYYPAVFKAIGEAQERIILETFIWFE
                     DNVGKQLHAALLAAAQRGVKAEVLLDGYGSPDLSDEFVNKLTAAGVVFRYYDPRPRLF
                     GMRTNVFRRMHRKIVVIDARIAFIGGLNYSAEHMSSYGPEAKQDYAVRLEGPIVEDIL
                     QFELENLPGQSAARRWWRRHHKAEENRQPGEAQVLLVWRDNEEHRDDIEPHYLKMLTQ
                     ARREVIIANAYFFPGYRFLHALRKAARRGVRIKLIIQGEPDMPIVRVGARLLYNYLVK
                     GGVQVFEYRRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANVIIHDRHFNQTLRD
                     NLNGIIAADCQQVDETMLPKRTWWNLTKSVLEFHFLRHFPALVGWHPAHTPRLTQVDP
                     PAQPTMETQDRVETENTGVKP"
     gene            18725..19681
                     /locus_tag="OQQ19_002232"
                     /pseudo
     CDS             18725..19681
                     /locus_tag="OQQ19_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415309.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0104 family protein"
     gene            complement(19717..>20113)
                     /locus_tag="OQQ19_002233"
     CDS             complement(19717..>20113)
                     /locus_tag="OQQ19_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706665.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="BAX inhibitor (BI)-1/YccA family protein"
                     /protein_id="HCS1803843.1"
                     /translation="IIVFSTAGAMFLISMLAGLLFNVDPGSHRFIIMMTLTGLALVII
                     VNAALMSERPIWVISCLVIVLWPGIISHGRNKLLELAGKCHSEELWSPVRCAFTGALT
                     LYYYFIGFFGILAAIAITLVWQRHTRFFH"
BASE COUNT         4725 a         5446 c         5298 g         4644 t
ORIGIN      
        1 gcgtgggtgc gtttttggcg ggtgagaacg gtaactccac cactggcgac gccatttata
       61 tgcgtggtgc cgatacctct aacagtattt atattgatgg cattcgcgat atcggcagcg
      121 tctcgcgcga caccttcaat accgagcagg tcgaagtgat taaagggccg tccggcaccg
      181 actacgggca cagcgcaccg acgggctcga tcaatatgat cagcaaacag ccgcgcaatg
      241 attccggcat tgacgcctcc gccagtattg gcagcgcctg gttccgccgc ggcacgctgg
      301 acgtcaatca ggtcattggt gataccaccg cggtgcgcct gaatgtaatg ggcgaaaaaa
      361 cgcacgatgc cggacgcgac aaagtcaaaa atgagcgtta cggcgtcgcc ccttctgtcg
      421 cttttggcct tggtacagcg aatcgtttgt atcttaatta tctgcatgtc acccagcaca
      481 acacgccaga cggcggcatt ccgaccatcg gtttgccggg ctattctgcc ccatctgcgg
      541 gaacggcggc cctgaatcat tccggaaaag ttgatactca taacttttac ggcacggatt
      601 ccgattacga cgattcgacc accgacaccg ccaccatgcg ttttgagcac gacatcaacg
      661 ataacaccac cattcgcaat actacccgtt ggtcgcgcgt aaagcaggat tacctgatga
      721 cggcgattat gggcggggcg tcgaatatta ctcagcccac cagcgatgtg aatagctgga
      781 cctggtcacg cacggcgaat accaaagatg tgagtaataa aattctcacc aaccagacca
      841 acctgacctc gacgttctat accggttcta tcggtcatga tgtcagtacc ggcgtggaat
      901 ttacccgtga aacgcagact aactacggcg ttaatccggt gacgttaccc gcggtaaata
      961 tttatcatcc tgacagcagc attcatcccg gcggcctgac gcgcaacggc gcaaacgcca
     1021 atggtcagac ggataccttc gcaatttacg cctttgatac gctgcaaatc acccgtgatt
     1081 ttgagctgaa cggcgggatc cgtctggata attatcatac tgaatatgac agtgccaccg
     1141 cctgcggcgg cagcggacgc ggtgccatca cctgcccagc tggtgtggca aaaggttctc
     1201 cggtcaccac cgtcgacacc gccaagtcgg gcaatctggt gaactggaaa gccggggcgc
     1261 tgtatcacct gacggaaaac ggtaatgtct atattaacta tgccgtttcc cagcagcctc
     1321 cgggcggcaa caacttcgcc cttgcgcagt ctggcagcgg taacagtgcc aaccgcacag
     1381 attttaaacc gcaaaaagcc aacaccagcg agattggcac caaatggcag gttctggata
     1441 aacgcctgtt gctcaccgcc gcactgttcc gtactgatat cgaaaatgaa gttgagcaaa
     1501 atgatgacgg aacttactcg caatacggta agaaacgtgt cgaaggctat gagatatccg
     1561 tggccgggaa tatcactccc gcgtggcagg tgattggcgg ctatacccag caaaaagcaa
     1621 ccatcaaaaa cggcaaagat gttgcccagg atggttcctc atcgctgccg tataccccgg
     1681 agcacgcctt caccttatgg agccagtatc aggcaaccga tgatatctct gttggcgcgg
     1741 gcgcacgcta tatcggcagt atgcataaag gttcagacgg cgcggtggga acgccagcgt
     1801 ttaccgaagg ttactgggtc gccgatgcca aactggggta tcgggttaat cgcaatctcg
     1861 acttccagct aaacgtttac aacctgtttg ataccgatta cgtcgcctca atcaacaaga
     1921 gcggctaccg ttatcacccg ggcaagccaa gaaccttctt gctcacagcc aatatgcatt
     1981 tctgattcag atgtggggcg caggccccac tttttggaga aattgtatga tgtaccacat
     2041 tcccggcgtg ttatcgccac aggacgtcgc tcgttttcgc gaacaactgg aacaagccga
     2101 atgggtggat ggacgcgtca ccaccggcgc acaaggtgcg caagttaaga acaatcaaca
     2161 ggtagacacc cgcagcacgt tatacgccgc cctgcaaaat gaggtgctga acgcggttaa
     2221 ccaacatgct ttattctttg ccgcggcctt gccgcgtacc ctttccacgc cgctgtttaa
     2281 tcgctatcag aacaatgaaa cctatggttt tcatgtggat ggcgcagtac gcagccatcc
     2341 acaaaacggc tggatgcgca ctgacctttc tgccacgctg tttttaagcg atccacaaag
     2401 ctacgacggc ggcgaactgg tcgttaatga caccttcgga caacatcggg taaaactccc
     2461 ggcaggtgat ctcgtgttgt atccctccag cagcctgcat tgcgtgacac ccgtaacccg
     2521 cggcgtacga gtggcatcat ttatgtggat ccagtcgatg atccgcgatg ataaaaagcg
     2581 cgccatgctg tttgaactag acaaaaatat tcagtcgctg aaaagccgct atggtgaaaa
     2641 tgaagagatc ctgtcgctgc tcaatcttta tcataatctg ctgcgggaat ggtcggagat
     2701 ctgacgcttg aactgcccag gttcgtccct atattagcta cacttaactg tacaagcatt
     2761 gatatgggga ggacgatatg gcatccggtt gggctaacga tgacgccgtc aacgaacaga
     2821 tcaacagtac aattgaagat gcgattgccc gcgctcgggg tgaaattccg cgtggctaaa
     2881 gcctgtatga atgtgaagag tgcggtgccc ccatcccgca agcccgtcgg gaagccattc
     2941 ctggcgtgcg cttatgtatt cattgtcagc aggagaaaga tttacaaaaa ccagcgtata
     3001 caggatataa tcgcagaggt tcgaaagaca gccagttacg ttaactacaa ctggcgagat
     3061 gcatagcgag tataatttgt attttgcgtg gcattccgtg cctttaacgc tgctgtgact
     3121 gccacgcggc ataaaacaag tccataagta caacaaataa atggtttatc agtatgttag
     3181 atgtcaatca atttatttga acaaggcggt caattctctt cgattttatc tctcgaaaaa
     3241 aaacgtgata ctcatcacat cgacgaaaca acgtcactta tacaaaaatc acctgcgaga
     3301 gattaattat gaaaactatc aatactgttg ttgctgctat ggctctttca actctatcat
     3361 ttggcgtgtt cgcggcggaa ccggtaacgg catcccaggc acagaacatg aataaaatcg
     3421 gcgtggtttc tgccgatggc gcatccaccc tcgatgccct ggaagcgaaa ctgactgaga
     3481 aagccgcggc agccggtgcc agtggataca gcatcacttc tgccaccaac aacaataaat
     3541 taagcggtac tgcggtaatt tataagtaat tcgtaggacg gataaggcgt ttacgccgca
     3601 tccggcaaca gatgcctgat gcgacgctac cgcgtcttat caggcctaca aaatccgaac
     3661 cgttggacgg atcaggcggt tacgctacgt ccagcacaag tatttccctg tctgtttgcc
     3721 gacagacgca tatgctctaa ccctcattga tcctatatta cccttgtttg cccgtccgtt
     3781 actggacggg ctttttttag ctggctaact gctgacagaa agcctgcaac gtctcttccg
     3841 acataccaat ctgccgcgcc gcatcacaaa tggcctgcca gcttcccgca tccaatggaa
     3901 tcccctgctc ctgccgttcg cgacgcgtgt tcacttccca ctcgcccggt agcaaaatcg
     3961 gcttatcgtc atcatgcggc gaggctttca cccactcggc aaaggcttca gtctgcgcgc
     4021 tacaatccgg cgcgccgaac agttccgggt tgatgatgat agtggtcatg cagttaagaa
     4081 tggcatcggg actggtttgt aacgtttcct gatgcgtcgt tttaccgcca gaaagcgccc
     4141 cgccaagaat ttcacacatc gctgcaaggg cgtagccttt atgttcggca aaggtcaaca
     4201 gcgaccccaa cggcgactcc tgcattaccg ccggattggt cgtcggcacg ccgttaacgt
     4261 caatcaggca acctggcggc acggggacgc ctttatgcca ggcgacgcga gttttaccaa
     4321 atgcgatggc gctggtggcg taatcaagca acagcgggaa attatcttta cgagggaaaa
     4381 ccacacagaa cggattggtg ccaaagcggc tgtcgcgacc gtggaacggt gcgaccattg
     4441 gaataccgac cacgctaaca aagtggatag agacaaaccc cgccgctgca cactgctccg
     4501 cccagtaacc gatacggccg atatgatgcg agttatgtag cgccacggca gcaataccgt
     4561 gctgatgcgc tttctcaatc cccagcgcca tcgcttcgtg tgccgcgacc tgaccgaatg
     4621 cgcgatcgcc atcgagcgtg actgccgccc ccgcctcttt aacgattttg gcatgatggt
     4681 taatttgcag atgcccctga ctccaggaac gcacatagct tgggatcatg ccaataccat
     4741 gagaatcatg ccctgccagg tttgccgcga ttaaatgatc ggccactaat ttcgcttctt
     4801 gttcctcgct acccatctga cgaaatacag cctgaataaa actgtgcagc gtctgagcat
     4861 caaagcgatg accactttcc atggttaact cctgtttatg ttatgtgttt gttgtttttt
     4921 tatgctgcac gccgggcgcg ggaaggtcaa taaagatgca ggaatttcat attgcggtgg
     4981 ggtaaaagcc ggatgacatg gctcatccgg ctgagaaaag aattaaaatg cctgattaac
     5041 gcgcgccagg ccgtcgctga tagttgccgc ttcacccgta gcctccaggc agcaagccat
     5101 ctggattttc agcgattcgg gaatcggttc gctgccagca aggcaacgct caatccactg
     5161 cgccgtggtt tctgggtctt ttgcttgtgg cagtaactcg ctaccagcag tgtcctgttt
     5221 ttcatacagc acccgcatcc cttcacggtc aatgagattg atctgcgggc agcgctgcgg
     5281 attagcatac acttcgcctt cagtaccatg cattagtagc gcccgcccgc cgatatcgct
     5341 aaagaacttc gcgactcgcc cgatgtattc cggatgcgaa acgctggaaa gacgcagcgc
     5401 ctcaccttcg gcaaatggcg tcgccagttt cgccagggta tgtgcactgt tacgcacgcc
     5461 catccgccag cgcatcgcca gttgtttttc cagcggcggg caaaacgcgc cgacaggcat
     5521 aaacaccggt tgatgttcgt cgagcttcgc ctgcgcctgc ccgccgtgca acgttggtgt
     5581 aatacccatc agttcgaaaa tggtttctgt cagcacgcga gttggatctt cgctaacccc
     5641 gtgaaccacc acaggaaaac cgagtttgtg caggagaata gccaacaacg gcgtcaggtt
     5701 ggcctgttta cgcgcgccgt tgtaactggg gatgacaatc ggcatcggct tgcctgcagg
     5761 cggcgtcagc ttgatggtgt gattttgcat ggcttcgtaa aagccgagca tctctgcttc
     5821 cccttcccct ttgatacgta gcgcaatcaa tacgccgccc aactcaaggt cagggacttc
     5881 accattgagc atatgggcat acagaccgcg cgcagtatcc cggtctaaat cgcgcgcgtg
     5941 gtttttcccg cgcccgatct ctttaatgat tttgcgatag tccatttacg actccttacc
     6001 tgactcacat cattaacgcc gccgacggcg tggggatttc gttttttctt tctttttaac
     6061 tataccttca gggacttccg gttgctctat cggaaatacc ggtaatgcat ccagtagtcg
     6121 cttgccataa tttttggtca gcaagcgttt gtcgtagata accacttcgc cccagcaacc
     6181 gtggcttcga atcagtcgcc caacctgctg aatcaggtta aacgaggcgc tcggcaggct
     6241 ttgcacctca aacggatagc ggttgaggct tttcagccat tccccttcgg tgatcaccac
     6301 cgggctgtcg atgggcggaa aagcgatttt gtggatatgc acctggctga gcagatcacc
     6361 tttcaaatca agcccttcgg caaatgactg taagcccacc agcacactac gctcaccgtt
     6421 ggcaacgcgt ttgcggtgca gttcaactaa gcgataacgc ggctgatcgc cctgcaccag
     6481 cagcatcagg cgtaaatccg tcacatagtc gagaaagcgc tgcatcgccc gtccgctggc
     6541 aaacagtacc aacataccga gatgtttttt gctctccacc tgctcacgga aaaaggccgc
     6601 catttcggca atatgctgct cttcgttgtc gatggaaggc tcaaagcgca tccggggaat
     6661 aacaattttg ccctgttcgc agtggttaaa gggggaatcc agcgccacaa aacggtcgcc
     6721 cgctttctct ttcagcccgc tcatctcctg caaacgcgaa aaactgttca gcgaacgcaa
     6781 ggttgcggag gtgacaataa tgtgcggaat actgcgccac agcagccttt ccagctgatc
     6841 gctgacacgt attcccacgc agtgaaacca gagatgcagc tgcccttcgc gctcttcccg
     6901 cgtcgcccat ttggtcaccg gcgcaccgga agattgcgcc agagacgcca gccgccagag
     6961 tttgctttgc gcctcgaaca tccccaacgc gcggttcatc tgcaaaatca accgatgcag
     7021 acgcacaata tcgtggctgc cggttttctc acttaaatcg ttaagaaata actccgccag
     7081 accacgcagc atctcggtga gttttgccag ccgctggcag atctccagca cttcatcagg
     7141 cagttcgccc atcgcaaaac ggtgctctac ctcctgcccg gcaggcatgt agagattgag
     7201 aatgttgttt aacgaggcga taagctcata caactcttca caatgcgcat tcaaacgttc
     7261 agggatcgcc agcggtggga tggtcttcgg gcgaaactgc tccatgcagg tagcgaccag
     7321 tttcgtgaac aagtccagct gtagtcgata ccagggcgcg gtgatttcag cgctcatctc
     7381 cagcgcatcc cgggccacat ctggcaggtg atgaccttcg tccagcacca gcagcagatt
     7441 tttcgggtca ggcagtacgg cttcgctttc catcgccgcc atcaccagcg catggtttgc
     7501 caccaccact tccgcttcct gaatctcccg acgagcaaca aaaaacgggc attcacgata
     7561 gtagtaacag ttacggttaa ggcagctggc tttgtcggta ctcaaacgac gccagagatc
     7621 atcatctata gcgatatccg tatgatcgcg cagaccatcc catttataag tgtcgagatc
     7681 gcccttcagc ttcgcacaac gtttttgctc ttcctgatta tttggcgtca gttcgtcgtc
     7741 aagaaacgcc agcagatcct gttgcgtggg ttcagtgctg gcgagcgccg tcagattacg
     7801 cggacaaacg tagcgcccac gcccgaaagc ggcagtgaat ttaagatcgg gaatgatctt
     7861 tttcagcagc ggtaaatctt tgctgtaaat ctgatcctgc aacgccacgt tggcggtact
     7921 caccaccagc gttttttgct cttcgcgggc aatggcgatg ccggggatca aataggagag
     7981 cgttttccca acgccggtgg gggcttcaat cgccagatgc cgcccttctt ctccggccag
     8041 cgttttggcg acgtccgcaa tcatctgccg ctgcggcgca cggggaataa agtcggggat
     8101 ctgttcctga agcgccttat accaagcggc aatttgcgct ttaagcgcgg cggttaatgc
     8161 catgagaaaa cctgaaatac tgtataaaca gccaatattg tggcattttt cggttttcag
     8221 gggtaatggt ttttctgttt ctggaaagcg gctcgcaata accaccaaca taatgcggtt
     8281 taatgcccgt tcgagcacaa aggatccaac acgtcatgca agacaccatc ataaatttct
     8341 acagcaccag cgatgactac ggtgattttt ctaactttgc cgcctggccc atcaaggttg
     8401 acgggaaaac ctggcccacc tccgaacact attttcaggc acaaaaattc cttgatgaaa
     8461 aataccgcga agagatccgt cgggtttctt cccccatggt cgccgctcgc atggggcgta
     8521 atcgttccaa gccacttcgt aaaaactggg agtcggttaa agaacaggtg atgcgtaaag
     8581 cacttcgtgc taaattcgaa cagcatgcag aactgcgtgc gctcttgctg gcaaccgcgc
     8641 ccgcaaaact ggttgagcat acggaaaacg atgcttactg gggagacggt ggtaatggta
     8701 agggcaagaa tcgactgggc taccttttaa tggagttgcg cgaacaattg gctatagaga
     8761 agtaacgtct cggtggctta tgggcggtaa aacagataaa ttttttcccg tgttctcaaa
     8821 ttgctgacaa gtgcttgttg tgaaatgccg gatgcggcgt aaacgcctta tccggcctac
     8881 aaaagcatgc aaattcaata tattgcagag ttaacgtagg cctgataagc gtagcgcatc
     8941 aggcagtttt gcgtttgttc atcagcctga tgccgggcat agcccggcat aaaagattac
     9001 tgcgcagcgg caggtttacg cggacggcgg cgacgttgtt gttcgcctgc cggtttggca
     9061 tcgccgaggc ggcgagacgg tttttctgca ggtttcgcgc ttgcagattt tgcgccacct
     9121 tccccacggc gtggttgctg ttgaccgcga ccaccacctt gcccacgacc gccgccgcca
     9181 cgttgctggc gaccgttctg gatcggttcg gctttgattg acgggtccgg ctcatagccc
     9241 ggaatcgcaa tgcgcgggat ctcttttttc agcagttttt cgatatcacg cagcagtttg
     9301 tgttcatcaa cacacaccag cgacaacgct tcaccggtag cagccgcacg accggtacgc
     9361 ccgatacggt ggacataatc ttccggtacg tttggcagtt catagttgac gacgtgcggc
     9421 aactcttcga tatccagacc gcgcgcagcg atatcggtcg ccaccagtac gcgaatgtca
     9481 ctcgatttaa aatcagccag cgcacgggta cgcgcacctt gcgatttatt cccgtggatc
     9541 gccgcactac ggatgccatc tttattgagc tgctcagcca gatggttagc gccgtgtttg
     9601 gtacgggtaa acaccagcac ctgctgccag ttccctttac caatcatgtg cgacagcaat
     9661 tcgcgtttgc gtttcttatc gacaaagtga acgtgctggg tcacctgatc agacgcggta
     9721 ttgcggcgtg ccacttcgat ttccagcggg ttgtgcaaca gtttttccgc cagggcttta
     9781 atatcgtcag agaaggtcgc agagaacagc aggttctggc gtttcgctgg cagttttgtt
     9841 aacacgcgac ggatatcgtg gataaagccc atgtcgagca tgcggtcagc ttcatcgagg
     9901 acgaggattt caacctgatc cagcttcact gcattttgat gttccaggtc cagcaaacgt
     9961 cccggtgttg ccaccagaac atcaacgccg ccgcgcagct tcatcatttg cgggttaatg
    10021 ctgacaccgc caaacaccac cagcgaacga atgttcaaat atttgctgta atcacggacg
    10081 ttttcgccaa tctgcgcagc cagttcacgg gtcggggtaa gaatgagcgc acgtaccgga
    10141 cgacgccctt tggcgtgcgg ctggcgagtg atcaggtgtt gcaacagcgg cagcgtaaag
    10201 cccgctgttt taccggtacc ggtctgggcg ctagccatca ggtcgcggcc ttccagcacc
    10261 gcagggatcg cctgctgctg aataggggtg ggttcacggt aaccctgctc ggcaacggcg
    10321 cgcaggatat cagggcttaa acccaaagaa tcgaaagaca taactactcc gaaccgcccc
    10381 gaccgttacc ggtgtagttt tcagggagat actgaaaagg aaaatgacaa aaaccacaat
    10441 gtcatgaggg agcggagtgt agcagttttt gtgacgcagc gcataaatta tccctgtgac
    10501 tggcgttgct aaaattctta gccatactgg acaactcccc tatggagtca taatcttaat
    10561 caatcatttg attaagaatg gactgtgcga tgaataatcc tgccatgaca atcaagggtg
    10621 aacaggcgaa aaaacagctg attgctgccg cactggcgca gtttggtgaa tatggaatga
    10681 acaccaccac tcgcgagata gccgcccagg ccgggcagaa tatcgctgcc atcacctact
    10741 acttcggttc gaaagaagat ttgtacctcg cctgcgccca gtggattgcc gattttattg
    10801 gcgagcagtt ccgtccgcat gccgaggaag ccgaacgctt gttcgcgcaa ccacagcctg
    10861 atcgggctgc catccgtgaa ctgatccttc gcgcctgcag gaacatgatt aagctgctca
    10921 cccaggatga caccgtcaac ctcagcaagt ttatctcccg tgagcagctc tctcccacgg
    10981 cagcctacca cctggtgcac gaacaggtga ttagtccgct acacagccac ctgacacgcc
    11041 tgattgccgc ctggaccggc tgcgacgcca atgacacccg catgatcctt catacccatg
    11101 cgttgattgg tgagattctg gcgttccgtc ttggcaaaga aacaattctg ttacgtaccg
    11161 gctggaccgc gttcgatgaa gaaaagaccg aactgatcaa ccagacggtg acctgtcata
    11221 tcgacctgat tttgcaagga ttatcgcaaa ggagtttgta gtgatgaaaa aacctgtcgt
    11281 gatcggactg gcggtagtgg tacttgccgc cgtggttgcc ggaggctact ggtggtatca
    11341 aagccgccag gataacggcc tgaagctgta tggcaacgtg gatattcgta cggtgaatct
    11401 tagtttccgt gttggggggc gcgttgaatc gctggcggtg gacgaaggtg atgcgatcaa
    11461 agcgggccag gtgctgggcg aactggatca caagccgtat gagattgccc tgatgcaggt
    11521 gaaagcgggc gtctcggtgg cacaggcgca gtatgacctg atgcttgccg ggtatcgcga
    11581 tgaagaaatc gctcaggccg ccgcagcggt gaaacaggcg caagccgcct atgactatgc
    11641 gcagaacttc tataaccgcc agcaaggact gtggaaaagc cgcaccattt cggcaaatga
    11701 cctggaaaat gcccgctcct cgcgcgacca ggcacaggca acgctgaaat cagcacagga
    11761 taaattgcgt cagtaccgtt ccggtaaccg tgaacaggac atcgctcagg cgaaagccag
    11821 cctcgaacag gcgcaggcgc aactggcgca ggcggagctg aatttacagg actcaacgtt
    11881 gatagcaccg tctgatggca cactgttaac gcgcgcggtg gagccaggca cggttctcaa
    11941 tgaaggtggc acggtgttta ccgtttcact aacgcgtccg gtgtgggtgc gcgcttatgt
    12001 tgatgaacgg aatcttgacc aggcccagcc ggggcgcaaa gtgctgcttt ataccgatgg
    12061 tcgcccggac aagccgtatc acgggcagat tggtttcgtt tcgccgactg ctgaatttac
    12121 cccgaaaacc gtcgaaacac cggatctgcg taccgacctc gtctatcgcc tgcgtattgt
    12181 ggtgaccgac gccgatgatg cgttacgcca gggaatgccg gtgacggtgc aattcggtaa
    12241 cgaggcagga catgaatgat gccgttatca cgctgaacgg cctggaaaaa cgctttccgg
    12301 gcatgggcaa gcccgccgtc gcgccgctcg attgtaccat tcacgccggt tatgtgacgg
    12361 ggctggtggg gccggatggt gcaggtaaaa ccacgctaat gcggatgctg gcgggattac
    12421 tgaaacccga cagcggcaat gccacgatga ttggctttga tccaatcaaa aacgacggcg
    12481 cgctgcacgc cgtgctcggc tatatgccgc agaaatttgg tctgtatgaa gatctcacgg
    12541 tgatggagaa cctcaatctg tacgcggatt tgcgcagcgt caccggcgag gcacgtaagc
    12601 aaacttttgc tcgcctgctg gagtttacgt ctcttgggcc gtttaccgga cgcctggcgg
    12661 gcaagctctc cggtgggatg aaacaaaaac tcggtctggc ctgtaccctg gtgggcgaac
    12721 cgaaagtgtt gctgctcgat gaacccggcg tcggcgttga ccctatctca cggcgcgaac
    12781 tgtggcagat ggtgcatgag ctggcaagcg aagggatgtt aatcctctgg agtacctcgt
    12841 atctcgacga agccgagcag tgccgtgacg tgttactgat gaatgaaggc gagttgctgt
    12901 atcagggaga accaaaagcc ctgacacaaa ccatggccgg acgcagcttt ctgatgacca
    12961 gtccacacga gggcaaccgc aaactgttgc aacgcgcctt gaaactgcca caggtcagcg
    13021 acggcatgat tcaggggaaa tcggtacgtc tgatcctcaa aaaagaggcc acaccagacg
    13081 atattcgcca tgccgacggg atgccggaaa tcaacatcaa cgaaactacg ccgcgttttg
    13141 aagatgcatt tattgatttg ctgggtggtg ccggaacctc agaatcgccg ctgggtgcaa
    13201 tattgcatac ggtagaaggc acacccggcg agacggtgat cgaagcgaaa gaactgacca
    13261 agaaatttgg tgattttgcc gccaccgatc acgtcaactt tgccgttaaa cgtggggaga
    13321 tttttggttt gctggggcca aacggcgcgg gtaaatcgac cacctttaag atgatgtgcg
    13381 gtttgctggt gccgacttcc ggccaggcgc tggtgctggg gatggatctg aaagagagtt
    13441 ccggtaaagc gcgccagcat ctcggctata tggcgcaaaa attttcgctc tacggcaacc
    13501 tgacggtcga acagaattta cgctttttct ctggtgtgta tggcttacgc ggtcgggcgc
    13561 agaacgaaaa aatctcccgt atgagcgagg catttggcct gaaaagtatc gcctcccacg
    13621 cgaccgatga actgccatta ggttttaaac agcggctggc gctggcctgt tcgctgatgc
    13681 atgaaccgga cattctgttt ctcgacgaac caacgtccgg cgttgatccc ctcacccgcc
    13741 gcgaattttg gctgcatatc aacagcatgg tagagaaagg cgtcacggtg atggtcacca
    13801 ctcactttat ggatgaagca gaatattgcg accgcatcgg cctggtgtac cgtgggaaat
    13861 taattgccag cggcacgccg gatgatttga aagcgcagtc ggccaacgac gagcaacccg
    13921 atcccaccat ggagcaagcc tttattcagt tgatccacga ctgggataag gagcatagca
    13981 atgagtaacc cgatcctgtc ctggcgtcgc gtacgggcgc tgtgcgttaa agagacgcgg
    14041 cagatcgttc gcgatccgag tagctggctg attgcggtag tgatcccgct gctactgctg
    14101 tttatttttg gttacggcat taacctcgac tccagcaagc tgcgggtcgg gattttactg
    14161 gaacagcgta gcgaagcggc gctggatttc acccacacca tgaccggttc gccctacatc
    14221 gacgccacca tcagcgataa ccgtcaggaa ctgatcgcca aaatgcaggc ggggaaaatt
    14281 cgcggtctgg tggttattcc ggtggatttt gcggaacaga tggagcgcgc caacgccacc
    14341 gcaccgattc aggtgatcac cgacggcagt gagccgaata ccgctaactt tgtacagggg
    14401 tatgtcgaag ggatctggca gatctggcaa atgcagcgag cggaggacaa cgggcagact
    14461 tttgaaccgc ttattgatgt acaaacccgc tactggttta acccggcggc gattagccag
    14521 cacttcatta tccccggtgc ggtgaccatt atcatgacgg tcatcggcgc gattctcacc
    14581 tcgctggtgg tggcgcgaga atgggaacgc ggcaccatgg aggctctgct ctctacggag
    14641 attacccgca cggaactgct gctgtgtaag ctgatccctt attactttct cgggatgctg
    14701 gcgatgttgc tgtgtatgct ggtgtcagtg tttattctcg gcgtgccgta tcgcgggtcg
    14761 ctgctgattc tgttttttat ctccagcctg tttttactca gtaccctggg gatggggctg
    14821 ctgatttcca cgattacccg caaccagttc aatgccgctc aggtcgccct gaacgccgct
    14881 tttctgccgt cgattatgct ttccggcttt atttttcaga tcgacagtat gcccgcggtg
    14941 atccgcgcgg tgacgtacat tattcccgct cgttatttcg tcagcaccct gcaaagcctg
    15001 ttcctcgccg ggaatattcc agtggtgctg gtggtaaacg tgctgttttt gatcgcttcg
    15061 gcggtgatgt ttatcggcct gacgtggctg aaaaccaaac gtcggctgga ttagggagaa
    15121 gagcatgttt catcgcttat ggacgttaat ccgcaaagag ttgcagtcgc tgctgcgcga
    15181 accgcaaacc cgcgcgattc tgattttacc tgtgcttatt caggtgattc tgttcccgtt
    15241 cgccgccacg ctggaagtga ctaacgccac catcgccatc tacgatgaag ataacggcga
    15301 gcattcggtg gagctgaccc aacgttttgc ccgcgccagc gcctttactc atgtgctgct
    15361 gctgaaaagc ccacaggaga tccgcccaac catcgacaca caaaaggcgt tactcctggt
    15421 gcgtttcccg gctgacttct cgcgcaaact ggataccttc cagaccgcgc cgttgcagtt
    15481 gatcctcgac gggcgtaact ccaacagtgc gcaaattgcc accaactacc tgcaacagat
    15541 cgtcaaaaat tatcagcagg aactgctgga aggaaaaccg aaacctaaca acagcgagct
    15601 ggtggtacgc aactggtata acccgaatct cgactacaaa tggtttgtgg tgccgtcact
    15661 gatcgccatg atcaccacta tcggcgtaat gatcgtcact tcactttccg tcgcccgcga
    15721 acgtgaacaa ggtacgctcg atcagctact ggtttcgccg ctcaccacct ggcagatctt
    15781 catcggcaaa gccgtaccgg cgttaattgt cgccaccttc caggccacca ttgtgctggc
    15841 gattggtatc tgggcgtatc aaatcccctt cgccggatcg ctggcgctgt tctactttac
    15901 gatggtgatt tacggtttat cgctggtggg attcggtctg ttgatttcat cactctgctc
    15961 gacacaacag caggcgttta tcggcgtgtt tgtctttatg atgcccgcca ttctcctttc
    16021 cggttacgtt tcgccggtgg aaaacatgcc agtatggctg caaaacctga cgtggattaa
    16081 ccctattcgc cactttacgg acattaccaa gcagatttat ttgaaggatg cgagtctgga
    16141 tattgtgtgg aatagtttgt ggccgctact ggtgataacg gccacgacag ggtcagcggc
    16201 gtacgcgatg tttagacgta aggtgatgta acttcttatc tttcgccagc aaagacacta
    16261 ccgccgggcc ggcaaggatt gccagccctg caattgccag caaaaagttg ttttccagta
    16321 cgcgggacaa cagccacagc acaatcagcg ctgcgccaaa ataccaggtc gtggtcagct
    16381 cttccaacac gtctgccacc tcacgccagc gttgctcggg gtggcgctga aacaccaaca
    16441 tcatcactac cgtgacacaa tacagtgcgc ataatcccac gccgacgtga accagagtct
    16501 tactcatcca gcccaccacc agcagcgcca ctaccagtaa atgcaacata atctgccagc
    16561 aacttagacc cgttgcgaca cgaacacgtt gttgccactt catggcttct ctcctgaaga
    16621 atttatctct acttactcag agtaccgaac tttacggaaa attccgtaag accgcacctt
    16681 tttgtgacgc cgactacact atttcaatga gataagaggc aaagacagga aaattatgcc
    16741 cgatcaaaca caacaatttt cgttcaaggt gctcaccatc aacattcaaa aaggttttac
    16801 cgcgtttaac cgacgcttca ttttgccgga acttcgcgac gcggtgcgta ccgtcagcgc
    16861 cgatattgtt tgcctgcagg aagtgatggg cgcgcacgaa gttcatccgc tgcatgtgga
    16921 aaactggccc gatacctcgc actacgagtt tctcgccgac actatgtgga gcgattttgc
    16981 ctacggtcgc aatgccgtat acccggaagg gcatcacggc aacgccgtac tgtcgcgtta
    17041 tcccattgaa cattatgaga atcgcgatgt ttcggtcgat ggtgcggaaa agcgcggcgt
    17101 gctctactgc cgcattgtgc cgccgatgac cggaaaagcg attcatgtga tgtgcgtaca
    17161 tctgggcctg cgtgaggcgc accgtcaggc gcagcttgcg atggggtgaa tgagctaccg
    17221 gacggcgaac cggtattggt ggcgggtgat ttcaatgact ggcggcaaaa agctaatcat
    17281 ccgttaaaag tgcaggccgg actggatgag atttttaccc gcgcccacgg acgcccggcg
    17341 cgcacgtttc cggtgcaatt tcctctacta cgactggaca ggatctacgt caaaaatgcc
    17401 agcgccagcg cgccaaccgc gttgccgctg cggacatggc gacacctttc tgatcatgcc
    17461 cctttaagtg cggagattca tttatgaaat gtagctggcg cgaaggcaat aagatccagt
    17521 tgctggaaaa cggcgagcaa tattatcccg cggtgtttaa ggcgattggc gaggcacaag
    17581 aacgcatcat tcttgaaacg tttatctggt ttgaggataa cgtcggcaaa cagctgcatg
    17641 cggcactact ggcagcagcg caacgcgggg ttaaagcgga agtcttgctg gatggctacg
    17701 gttcgccgga tctcagcgat gagtttgtca ataaactgac ggcagctggc gtagtgttcc
    17761 gctactacga tccccgccct cgcctttttg gtatgcgcac caatgtgttt cgccggatgc
    17821 atcgcaaaat tgtggtgatc gacgcgcgta tcgcctttat tggcgggctg aattactccg
    17881 ccgagcatat gtccagctac ggtccagagg ctaaacagga ttacgcggta cgccttgaag
    17941 ggccgattgt cgaagatatt ctccagtttg agctggaaaa cctgcctgga cagagcgcgg
    18001 cacggcgctg gtggcgacgt catcacaaag cggaagagaa ccgccagccg ggagaagcgc
    18061 aggtattgct ggtctggcgc gataacgaag aacatcgcga tgatattgaa ccccattatc
    18121 tgaaaatgct cactcaggcg cggcgggaag tgattatcgc caacgcctac ttcttccccg
    18181 gctatcgatt tttacacgcc ttgcgtaaag cggcacggcg cggggtgcgg atcaaactga
    18241 tcattcaggg cgaaccggat atgccgattg tcagagtcgg tgcgcgcttg ctgtataact
    18301 atctggttaa aggcggcgtt caggtttttg agtaccgccg ccgcccgctc cacggcaaag
    18361 tggcattgat ggacgatcac tgggcgacag tagggtccag taatctcgat ccgctcagtt
    18421 tgtcactgaa tctcgaagca aatgtcatca tccacgatcg tcattttaac cagacgctgc
    18481 gcgataatct gaacggcatt attgccgcag attgtcagca ggtggatgaa accatgctgc
    18541 ccaaacgcac ctggtggaac ctgaccaaaa gcgtgctgga gttccacttt ttacgccact
    18601 tcccggcgct ggttggctgg catccggcac acacaccacg tctgacgcag gttgatcccc
    18661 ccgcacaacc gacaatggaa acgcaggatc gggtagaaac tgaaaacacg ggggtaaaac
    18721 cctgatgagt aaatcacacc cgcgctagcg cttagcaaag aagatcctca cctggctgtt
    18781 ttttatcgcg gtgattgtgt tgctggtggt ctacgccaaa aaagtggact gggaagaggt
    18841 ctggaaggtc atccgcgact acaatcgcgt tgcgctgctt agtgcggtcg ggctggtggt
    18901 cgtcagctat ctgatttacg gctgctatga cctgctcgcc cgcttttact gcggtcacaa
    18961 actggcgaag cgccaggtga tgctggtgtc gtttatctgc tacgccttca acctgacgct
    19021 cagtacctgg gtcggcggca ttggtatgcg ctatcgtttg tactcccgac tagggttacc
    19081 gggcagcact attacgcgga ttttctcgct cagtattacc accaactggc tgggctatat
    19141 tttactggca gggattatct ttaccgcagg cgtggtggag ttgccggatc actggtatgt
    19201 cgctcaaact acgctgcgta ttctcggcat tggcttactg atgattatcg cggtttattt
    19261 gtggttttgc gctttcgcga agcaccgcca tatgaccatc aaagggcaaa agctggtgct
    19321 gccttcatgg aaattcgccc tcactcagat gctgatttcc agcgttaact ggatggtaat
    19381 gggggcgatt atctggctgt tacttggtca aagcgtgaac tatttctttg tactgggcgt
    19441 gttactggtt agtagtattg ctggcgtcat cgtgcatatt ccggcgggga tcggtgtgct
    19501 ggaagcggtg tttatcgcac tactggctgg ggagcatacc tcgaaaggga gcattatcgc
    19561 cgcgctgctc gcttatcgcg tcctgtatta ctttatcccg ctgctgctgg cgctgatctg
    19621 ttacctgcta ctggaaagcc aggcgaagaa gctacgggcg aaaaatgaag cggcgatgtg
    19681 aaatttagtt aagttcttta gtatctgcat tcacgactaa tgaaaaaaac gcgtatgcct
    19741 ttgccagaca agcgttatag ctatcgcggc aagtatccca aagaagccga taaaatagta
    19801 atagagtgtt aatgcacctg taaaagcgca acgaaccgga ctccacaact cttcactatg
    19861 gcattttcct gccagttcaa ggagcttatt tcgtccatgc gagataatgc ctggccataa
    19921 cacaatcact aagcaactta ttacccaaat gggccgttca ctcattaatg ccgcattcac
    19981 gatgattacc agggccaacc ctgtcaacgt catcataatg ataaaacggt gagaaccagg
    20041 atcaacatta aataataaac cggccagcat actgattaaa aacatcgcgc ccgcagtgct
    20101 gaacacaatg ata
//
LOCUS       DAJVSY010000070        20025 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.070, whole genome shotgun sequence.
ACCESSION   DAJVSY010000070 DAJVSY010000000
VERSION     DAJVSY010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20025)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20025)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20025
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.070"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..309
                     /locus_tag="OQQ19_002234"
     CDS             <1..309
                     /locus_tag="OQQ19_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HCS1803844.1"
                     /translation="IIVQWDANSNGIWDREPVKESDQIGFRLKEHVLETLRGATSCEG
                     KGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLTVNMRAASKSEPQTVVNASYSVTGFNL
                     "
     gene            306..713
                     /locus_tag="OQQ19_002235"
     CDS             306..713
                     /locus_tag="OQQ19_002235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2509 family protein"
                     /protein_id="HCS1803845.1"
                     /translation="MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQS
                     LRRQAIVQSALAWGKMHSWQTQPAVQCSQYAETDAQVCLRLLADNEALLIAGYEGVSL
                     WRTGEVIDGNIVFSPSGWSDFCPLKERALCQLP"
     gene            698..1021
                     /locus_tag="OQQ19_002236"
     CDS             698..1021
                     /locus_tag="OQQ19_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HCS1803846.1"
                     /translation="MSASLKNQQGFSLPEVMLAMVLMVMIVTALSGFQRTLMNSLASR
                     NQYQQLWRHGWQQTQLRAISPPANWQVNRLQTSQAGCVSISVTLVSPGGREGEMTRLH
                     CPNRQ"
     gene            1034..4402
                     /gene="recC"
                     /locus_tag="OQQ19_002237"
     CDS             1034..4402
                     /gene="recC"
                     /locus_tag="OQQ19_002237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HCS1803847.1"
                     /translation="MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQ
                     WLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQL
                     LEHEDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPEWLAQWETGHLVEGLGE
                     AQAWQAPLWKALVEYTHELGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISA
                     LPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPL
                     FRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNL
                     LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDR
                     LLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPV
                     LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRLWVNESGIRWGIDD
                     DNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS
                     LLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGL
                     GAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMND
                     GVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGLSIQDNS
                     ERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE
                     RQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVN
                     FRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGE
                     IFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLL
                     SVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREG
                     MSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDNI
                     WYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS"
     gene            4578..7466
                     /gene="ptrA"
                     /locus_tag="OQQ19_002238"
     CDS             4578..7466
                     /gene="ptrA"
                     /locus_tag="OQQ19_002238"
                     /EC_number="3.4.24.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin"
                     /protein_id="HCS1803848.1"
                     /translation="MPRSTWFKALLLLVALWAPLSQAETGWQPIQETIRKSDKDNRQY
                     QAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYP
                     QADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAE
                     RERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQAL
                     KDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKG
                     IIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVE
                     GISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDEL
                     ANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMT
                     PQNARIWYISPKEPHNKTAYFVDAPYQVDKISEQTFADWQQKAANIALSLPELNPYIP
                     DDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFSSEPKADVSLILRNPKAMDSARNQ
                     VMFALNDYLAGLALDQLSNQASVGGISFSTNANNGLMVNANGYTQRLPQLFQALLEGY
                     FSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSI
                     TLKEVLAYRDALKSGARPEFMVIGNMTEAQATTQARDVQKQLGADGSEWCRNKDVVVD
                     KKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLG
                     YAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTTEAKLRAMKPDEFAQIQQ
                     AVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVV
                     EPQGMAILSQISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEKNE"
     gene            7459..11001
                     /gene="recB"
                     /locus_tag="OQQ19_002239"
     CDS             7459..11001
                     /gene="recB"
                     /locus_tag="OQQ19_002239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HCS1803849.1"
                     /translation="MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGL
                     GGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLE
                     EIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLR
                     YQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETL
                     ASRHAQIVARIATVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEE
                     TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAE
                     IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQ
                     QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSA
                     PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES
                     CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ
                     VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN
                     ALDIETLNNDEHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGER
                     RLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVT
                     IHKSKGLEYPLVWLPFITNFRVQDQAFYHDRHSFEAVLDLNAAPKSVDLAEVERLAED
                     LRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC
                     IEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGH
                     GIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW
                     VQEKLELGGFESQWEPVLTEWITAVLQAPLNEKGVSLSQLSDRDKQVEMEFYLPISEP
                     LIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE
                     DSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYDRHFGGVIYLFLRGV
                     DKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA"
     gene            11001..12827
                     /gene="recD"
                     /locus_tag="OQQ19_002240"
     CDS             11001..12827
                     /gene="recD"
                     /locus_tag="OQQ19_002240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HCS1803850.1"
                     /translation="MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSH
                     DAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMIL
                     CGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAV
                     ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK
                     ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL
                     PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTG
                     THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD
                     IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFG
                     VAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT
                     RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELV
                     YTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSSRE"
     gene            complement(12889..14220)
                     /gene="argA"
                     /locus_tag="OQQ19_002241"
     CDS             complement(12889..14220)
                     /gene="argA"
                     /locus_tag="OQQ19_002241"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HCS1803851.1"
                     /translation="MVKERKTELVEGFRHSVPYINTHRGKTFVIMLGGEAIEHENFSS
                     IVNDIGLLHSLGIRLVVVYGARPQIDANLAAHHHEPLYHKNIRVTDAKTLELVKQAAG
                     TLQLDITARLSMSLNNTPLQGAHINVVSGNFIIAQPLGVDDGVDYCHSGRIRRIDEDA
                     IHRQLDSGAIVLMGPVAVSVTGESFNLTSEEIATQLAIKLKAEKMIGFCSSQGVTNDD
                     GDIVSELFPNEAQARVEAQEEKGDYNSGTVRFLRGAVKACRSGVRRCHLISYQEDGAL
                     LQELFSRDGIGTQIVMESAEQIRRATINDIGGILELIRPLEQQGILVRRSREQLEMEI
                     DKFTIIQRDNTTIACAALYPFPEEKIGEMACVAVHPDYRSSSRGEVLLERIAAQAKQS
                     GLSKLFVLTTRSIHWFQERGFTPVDIDLLPESKKQLYNYQRKSKVLMADLG"
     gene            14452..15705
                     /gene="amiC"
                     /locus_tag="OQQ19_002242"
     CDS             14452..15705
                     /gene="amiC"
                     /locus_tag="OQQ19_002242"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311701.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiC"
                     /protein_id="HCS1803852.1"
                     /translation="MSGSNTAISRRRLLQGAGAMWLLSVSQVSLAAVSQVVAVRVWPA
                     SSYTRVTVESNRQLKYKQFALSNPERVVVDIEDVNLNSVLKGMAAQIRADDPFIKSAR
                     VGQFDPQTVRMVFELKQNVKPQLFALAPVAGFKERLVMDLYPANAQDMQDPLLALLED
                     YNKGDLEKQVPPAQSGPQPGKAGRDRPIVIMLDPGHGGEDSGAVGKYKTREKDVVLQI
                     ARRLRSLIEKEGNMKVYMTRNEDIFIPLQVRVAKAQKQRADLFVSIHADAFTSRQPSG
                     SSVFALSTKGATSTAAKYLAQTQNASDLIGGVSKSGDRYVDHTMFDMVQSLTIADSLK
                     FGKAVLNKLGKINKLHKNQVEQAGFAVLKAPDIPSILVETAFISNVEEERKLKTATFQ
                     QEVAESILAGIKAYFADGATLARRG"
     gene            15965..16117
                     /locus_tag="OQQ19_002243"
     CDS             15965..16117
                     /locus_tag="OQQ19_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001432072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HCS1803853.1"
                     /translation="MIIEKVMNNNCVQASVNGQEVIISGPGVGYNKNMVCRSLSILQT
                     GFLCQK"
     gene            16140..16787
                     /locus_tag="OQQ19_002244"
     CDS             16140..16787
                     /locus_tag="OQQ19_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000569552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HCS1803854.1"
                     /translation="MIEHVGIEYIFVAEKIVHYAESNLEKKLNPSLLLILADHISNAI
                     SRVVSGIQINNVFLEEIKALYKAEYAISRDALTIINEQFSVQLPDDEIGFIALHILNN
                     YENSVDYESVRIIELSQKITELIEVVYNRRVDRSSFNYSRFMMHLKYFSSRVLCNEKI
                     KQKNIGDIYEQFLEKDFQLQRAIHEIERYLYATFKYDLILEEKLYLSIRIKVLMD"
     gene            16819..18399
                     /locus_tag="OQQ19_002245"
                     /pseudo
     CDS             16819..18399
                     /locus_tag="OQQ19_002245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000810568.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
     gene            18399..19607
                     /locus_tag="OQQ19_002246"
     CDS             18399..19607
                     /locus_tag="OQQ19_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000382418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PatB family C-S lyase"
                     /protein_id="HCS1803855.1"
                     /translation="MDIFNTSISRKGTYCTQWDFCEDRFGVKDVLPFSISDMDLPIPE
                     AIIRTLKKRLEHPILGYSRWQHDDYLNSIVNWYHQQYKTEIQPEWITYSPSVMYSISK
                     AIEILTLNGDNILIFTPVYNAFFDVIKHNGRNMLTTSLMKENGRGYVINWQDFELKIK
                     SAKMVLLCNPHNPTGTVWSEDDLHRIAACCARHNIWLCSDEIHSDFVFNHSFTSALTI
                     KDDKVVVFNSISKTFNVPALTGSYMISTDDNFNHKFRTISRYRDFVNSPSVLNVIATI
                     VAYNECEEWLKSLKVHIASNIQFTLQYLNENIPELIVWPAEGCYFSWVDCSALGYPFD
                     KFYRRLINEGRVGIMAGHVYGTEGEGYLRLNLACSREKLYMGLARLASVIKNINQEKE
                     NEQYGSYPSY"
     gene            19576..>20025
                     /locus_tag="OQQ19_002247"
     CDS             19576..>20025
                     /locus_tag="OQQ19_002247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001683249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HCS1803856.1"
                     /translation="MNNTDLIHLIKRFMRNEHKAVEEVIDSPLSEVANLIKILQSCQG
                     KVVFIGVGKSGIIARKLAATFASTGTPSFFVHGTEAVHGDLGMVAKDDVVILISNSGE
                     TAEILATLPSLKKMGNYLISFIRSHHSSLAISCDLSVEIPVKSEADNL"
BASE COUNT         4962 a         4665 c         5346 g         5052 t
ORIGIN      
        1 atcattgtgc agtgggatgc gaacagtaac ggtatctggg atcgcgaacc ggtaaaagag
       61 tccgaccaga ttggatttcg tctgaaggag catgtgctgg aaacgctacg cggtgcgaca
      121 tcctgtgaag gtaagggctg ggataaagtc actaatccgg atgccatcat tatcgacact
      181 tttcaggtcg tacgtcagga tgtcagcggc ttctcgccgg tgttgacggt taatatgcgt
      241 gctgccagta agtctgaacc gcaaaccgtg gtgaatgcca gctatagcgt gacaggattc
      301 aacctgtgaa ccgcgaaaag ggtgtttcgt cactggctct ggtcctgatg ctgctggttt
      361 tgggtagttt gctattacaa ggaatgagcc aacaggatcg cagttttgcc tctcgcgtga
      421 gcatggaaag tcagtcattg cgccgccagg ccatcgttca gtcggcgctg gcgtggggaa
      481 aaatgcactc ctggcagacg cagccagcag ttcagtgctc gcagtacgct gaaaccgatg
      541 cccaggtttg tttgcgttta ctggcagata atgaagcctt attgattgcc ggttatgaag
      601 gcgtttcgtt gtggcgaaca ggcgaagtca ttgatggaaa cattgttttt tcgccaagcg
      661 gctggagcga tttttgtccg ctgaaagaga gggcgttatg tcagcttccc tgaagaatca
      721 acaaggcttt agcctgccgg aggtaatgtt ggcgatggtg ttgatggtga tgattgtcac
      781 tgcgttatcg ggtttccagc gaacattaat gaacagtctt gccagcagaa accagtacca
      841 acagctctgg cggcatggct ggcagcaaac gcaactgcgc gcgatttcgc caccagctaa
      901 ctggcaggtc aaccgattgc agacatcgca ggcgggatgt gtcagcatca gcgttacgct
      961 agtttcaccc gggggcagag aaggcgagat gacccgcctg cattgcccga atcgtcagta
     1021 gtcaggagcc gctatgttaa gggtctacca ttccaatcgt ctggacgtgc tggaagcgtt
     1081 gatggagttt attgtcgaac gcgaacggct ggacgatcct ttcgaaccag agatgattct
     1141 ggtgcaaagt accggtatgg cacagtggct gcaaatgacc ctgtcgcaaa agtttggtat
     1201 tgcggcaaac attgattttc cgctgcctgc gagctttatc tgggatatgt tcgtccgggt
     1261 gttaccggag atccccaaag agagcgcctt taacaaacag agcatgagct ggaaactgat
     1321 gactctgctg ccgcaactgt tggagcacga agactttacc ctgttgcggc attatctgac
     1381 tgacgatagc gacaagcgaa aactgttcca gctttcctca aaagcggcgg acctgtttga
     1441 ccagtatctg gtctatcgcc cggagtggct ggcacaatgg gaaacaggac atttggttga
     1501 agggctggga gaagcacagg cctggcaagc gccgttgtgg aaggcgctgg tggaatatac
     1561 ccatgaactc ggacaaccgc gctggcaccg cgcgaatctc tatcagcgct ttatcgaaac
     1621 gctggagtcc gcgacgacct gcccgccggg gttaccttcg cgcgtcttta tatgcggtat
     1681 ttccgcgtta ccgcctgttt atctccaggc gctccaggcg ctgggtaaac atattgaaat
     1741 ccatctcctg tttaccaacc cctgccgtta ttactggggc gatattaaag atcctgctta
     1801 tctggcgaaa ctgctgactc gtcagcgtcg acacagtttt gaagatcgcg aattgccgct
     1861 atttcgcgat agcgaaaatg ccggacagct ctttaacagc gatggtgaac aggatgtcgg
     1921 caacccgctg ctggcctcat gggggaagct tgggcgcgac tacatttatc tcctttctga
     1981 cctggagagc agccaggagc tggacgcctt tgtcgatgtc acgccagata acctgctgca
     2041 taacattcag tctgacattc tggaactgga aaaccgtgcc gttgctggtg tgaacatcga
     2101 agagttttcc cgtagcgata acaaacgccc gcttgatcca ctggatagca gtatcacctt
     2161 ccacgtttgc catagcccgc agcgtgaagt tgaagttttg cacgatcgcc tgctggcgat
     2221 gctggaagaa gacccgacac ttactccgcg cgacatcatc gtgatggtgg ctgatatcga
     2281 cagctacagt ccgtttattc aggctgtgtt tggtagcgca cctgcggatc gttacctgcc
     2341 ttacgccatt tccgaccgtc gggcgcggca gtcgcatccg gtactggaag cgtttatcag
     2401 cctgttatcg ttgccagaca gccgctttgt gtcggaagac gtgctggcat tactggatgt
     2461 gccggtgctg gcggcgcggt ttgacatcac cgaagaaggg ctgcgttatt tacgcctgtg
     2521 ggtcaacgaa tccggcattc gttgggggat agatgacgac aacgttcgcg agctggaact
     2581 ccccgccacc ggacaacaca cctggcgatt tggcctgacg cgtatgttgc tgggctacgc
     2641 gatggagagc gcgcagggcg agtggcaatc ggttctacct tatgatgagt cgagcggctt
     2701 aattgcagaa ctggtggggc atctggcttc actgctaatg cagctaaaca tctggcgtcg
     2761 cgggctggca caggagcgtc cgctagaaga gtggttgccg gtttgtcgcg atatgctcaa
     2821 cgccttcttc ctgccggatg cggaaaccga agcggcgatg acgctgatcg aacaacaatg
     2881 gcaggcgatt atcgccgaag gtttaggtgc gcagtatggc gacgcggtgc cgctgtcact
     2941 attgcgtgat gaactggcac agcgtctgga tcaagaacgt atcagccagc gttttctcgc
     3001 cggaccggtt aacatttgta ctctgatgcc aatgcgttca attccgttca aagtggtttg
     3061 cctgctggga atgaacgacg gcgtttatcc acgtcagctt gcgccattgg gctttgacct
     3121 gatgagccag aaaccgaagc gtggcgaccg tagccgtcgc gatgacgacc gctacctgtt
     3181 cctggaagcg ttaatttccg cgcagcaaaa actctatatc agttatatcg ggctttccat
     3241 tcaggataac agtgaacgtt tcccgtcggt actggtgcag gaactgatcg actacatcgg
     3301 gcaaagtcat tatctaccgg gcgatgaagc gctcaactgt gatgaaagcg aggcaagggt
     3361 aaaagcgcat cttacctgcc tccatacccg gatgccgttt gatccacaaa actaccagcc
     3421 aggcgaacga caaagctatg ctcgtgaatg gctacctgcg gccagccagg ctggtaaagc
     3481 acattctgaa tttgttcagc cgctgccgtt taccttaccg gaaaccgtgc cgctggaaac
     3541 gctacaacga ttctgggcac atccggtgcg ggcatttttc cagatgcgtt tgcaggtgaa
     3601 cttccgtacc gaagacagcg aaatccccga caccgagcca tttattctgg aagggcttag
     3661 ccgttatcaa atcaatcagc agttattgaa tgcactggtt gagcaggatg atgccgaacg
     3721 cttgttccgt cgcttccggg cggcagggga tttaccgtat ggcgcttttg gtgaaatttt
     3781 ctgggaaact cagtgccagg agatgcagca gcttgccgac agagtcattg cctgtcgcca
     3841 gccggggcag agtatggaaa ttgatctcgc ctgcaacggt gtgcagataa ctggctggtt
     3901 gccgcaggtg cagccggatg gcctgttgcg ctggcgtccc tctttattaa gtgtggcgca
     3961 gggaatgcaa ctttggctgg aacaccttgt ctactgtgcc agcggtggta atggtgaaag
     4021 tcgccttttt ctacgcaaag acggcgagtg gcgttttccg ccgcttgcag ccgaacaggc
     4081 tttgcattac ctctcacaac tgattgaggg gtatcgtgaa gggatgtccg cgccattgct
     4141 ggtgttacct gaaagtggcg gcgcgtggct aaaaacctgt tatgacgcgc aaaacgatgc
     4201 catgctggat gacgattcca cgttgcaaaa agcccgtacg aaattccttc aggcttacga
     4261 aggcaacatg atggtgcgtg gcgaaggtga taatatctgg tatcaaaggc tctggcggca
     4321 attaacacca gagacaatgg aggccatcgt tgaacagtcg caacgtttcc tgttaccgct
     4381 gtttcgcttt aatcagtcat gagtgctgta taaaaattgc gcaatctatc cgcttacttt
     4441 atgatgcgca ccagtcacgg actgatggtt atataaacat aggctgactc gtgcagcaca
     4501 agattaaatt ctggcagatg atttgcgtta acgtgttgaa tctggacaga aaattaagtt
     4561 gattatgagg tccgtgaatg ccccgcagca cttggttcaa agcattattg ttgttagttg
     4621 ccctttgggc acccttaagt caggcagaaa cgggatggca gccgattcag gaaaccatcc
     4681 gtaaaagtga taaagataac cgccagtatc aggctatacg tctggataac ggtatggtgg
     4741 tcttgctggt ttctgatccg caggcagtta aatcgctctc ggcgctggtg gtgcccgttg
     4801 ggtcgctgga agatcccgag gcgtaccagg ggctggcaca ttaccttgaa catatgagtc
     4861 tgatggggtc gaaaaagtac ccgcaggctg acagtctggc cgaatatctc aaaatgcacg
     4921 gcggtagtca caatgccagc actgcgccgt atcgcacggc tttctatctg gaagttgaga
     4981 acgacgcctt gcctggtgcg gtagaccgcc tggccgatgc tattgctgaa cctttgctcg
     5041 acaagaaata tgccgaacgt gagcgtaatg cggtgaacgc tgaattaacc atggcgcgta
     5101 cgcgtgacgg gatgcgcatg gcacaggtca gcgcagaaac cattaacccg gcacaccccg
     5161 gttcaaagtt ttctggtggt aacctcgaaa ctttaagcga taaacctggt aatccggtgc
     5221 agcaggcgct gaaagatttc cacgagaagt actattccgc caatctgatg aaggcggtta
     5281 tttacagcaa taaaccgctg ccggagttgg caaaaatggc ggcggacacc tttggtcgcg
     5341 tgccgaacaa agagagcaaa aaaccggaaa tcaccgtgcc ggtagtcacc gacgcgcaaa
     5401 agggcattat cattcattac gtcccggcac tgccgcgtaa agttctgcgc gttgagtttc
     5461 gcatcgataa caactcagcg aagttccgta gtaaaacgga tgaattgatt acctatctga
     5521 ttggtaatcg cagcccaggt acactttccg actggctgca aaagcaggga ttagttgagg
     5581 gcattagcgc caactccgat cctatcgtca acggcaacag cggcgtatta gcgatctctg
     5641 cgtctttaac cgataaaggc ctggctaatc gcgatcaggt tgtggcggca atttttagct
     5701 atctcaatct gttacgtgaa aaaggcattg ataaacaata cttcgatgaa ctggcgaatg
     5761 tgctggatat cgacttccgt tatccgtcga tcacccgtga tatggattac gtcgaatggc
     5821 tggcagatac catgattcgc gttccggttg agcatacgct ggatgcagtc aatattgccg
     5881 atcggtacga tgctaaagca gtaaaagaac gtctggcgat gatgacgccg cagaatgcgc
     5941 gtatctggta tatcagcccg aaagagccgc acaataaaac ggcttatttt gtcgatgcgc
     6001 cgtatcaggt cgataaaatc agcgaacaaa ctttcgctga ctggcagcaa aaagctgcca
     6061 atattgcgct ctccttaccg gagcttaacc cctatattcc tgacgatttc tcgctgatta
     6121 agtcagagaa gaaatatgac catccagagc tgattgttga tgagtcgaat ctgcgcgtgg
     6181 tgtatgcgcc aagccgttat ttttccagcg aacccaaagc tgatgtcagc ctgattttgc
     6241 gtaatccgaa agccatggac agcgcccgca atcaggtgat gtttgcgctc aatgattatc
     6301 tcgcagggct ggcgcttgat cagttaagca accaggcgtc ggttggtggc ataagttttt
     6361 ccaccaacgc taacaacggc cttatggtta atgctaatgg ttacacccag cgtctgccgc
     6421 agctgttcca ggcattgctc gaggggtact ttagctatac cgctacggaa gatcagcttg
     6481 agcaggcgaa gtcttggtat aaccagatga tggattccgc agaaaagggt aaagcgtttg
     6541 agcaggcgat tatgcccgcg cagatgctct cgcaagtgcc gtacttctcg cgagatgaac
     6601 ggcgtaaaat tttgccctcc attacgttga aagaggtgct ggcctatcgc gacgccttaa
     6661 aatcaggggc tcgaccagag tttatggtta tcggcaacat gaccgaggcc caggcaacaa
     6721 cgcaggcacg cgatgtgcaa aaacagttgg gcgctgatgg ttcagagtgg tgtcgaaaca
     6781 aagatgtagt ggtcgataaa aaacaatccg tcatctttga aaaagccggt aacagcaccg
     6841 actccgcact ggcagcggta tttgtaccga ctggctacga tgaatacacc agctcagcct
     6901 atagctctct gttggggcag atcgtacagc cgtggttcta caatcagttg cgtaccgaag
     6961 aacaattggg ctatgccgtg tttgcgtttc caatgagcgt ggggcgtcag tggggcatgg
     7021 gcttcctttt gcaaagcaat gataaacagc cttcattctt gtgggagcgt tacaaggcgt
     7081 ttttcccaac cacagaggca aaattgcgag cgatgaagcc agatgagttt gcgcaaatcc
     7141 agcaggcggt aattacccag atgctgcagg caccgcaaac gctcggcgaa gaagcatcga
     7201 agttaagtaa agatttcgat cgcggcaata tgcgcttcga ttcgcgtgat aaaatcgtgg
     7261 cccagataaa actgctgacg ccgcaaaaac ttgctgattt cttccatcag gcggtggtcg
     7321 agccgcaagg catggctatt ctgtcgcaga tttccggcag ccagaacggg aaagccgaat
     7381 atgtacaccc tgaaggctgg aaagtgtggg agaacgtcag cgcgttgcag caaacaatgc
     7441 ccctgatgag tgaaaagaat gagtgatgtc gccgagacac tagatccttt gcgcttgccc
     7501 ttacagggtg agcgcctgat tgaagcctct gccggcacag gcaaaacctt tacgattgcg
     7561 gcgctctatt tgcgcctgtt acttggacta ggcggttccg ccgcctttcc ccgcccgctg
     7621 accgttgaag aactgctggt ggtcaccttt accgaggctg ccacggcaga attgcgtggt
     7681 cgtatccgta gcaatatcca tgagttgcgc atcgcctgtc tgcgtgaaac taccgacaat
     7741 ccactgtacg aacgtctgct ggaagagatc gacgataaag cgcaagccgc gcagtggttg
     7801 ttgttagccg aacggcagat ggatgaagcg gcagtcttta ctattcacgg tttttgccag
     7861 cgcatgctca acctgaatgc ctttgaatcc ggcatgctgt ttgagcagca gctgattgaa
     7921 gatgagtctc tgctacgtta ccaggcctgc gccgatttct ggcgtcgcca ctgctacccg
     7981 ctgccgcgtg aaatagccca ggtcgtcttt gaaacctgga aagggccgca ggcgttgctg
     8041 cgcgatatta atcgttatct gcaaggcgaa gcgccggtta tcaaagcacc gccgcccgat
     8101 gatgaaacgc tggcttcccg ccacgcgcaa attgtggcgc gtattgctac ggtaaaacag
     8161 cagtggcgcg acgcagtggg tgaactggat gcgctgatcg aatcttctgg tattgatcga
     8221 cgcaagttta accgtagcaa tcaggctaaa tggatcgaca agatcagcgc ctgggcagaa
     8281 gaagagacca acagttatca gttgccggag tcgctggaaa aattctccca gcgtttctta
     8341 gaagatcgca cgaaagctgg gggggaaacc ccgcgacatc cactgtttga ggcgatcgat
     8401 caactgcttg cagaaccatt gtcgatccgc gatctggtga tcacccgcgc attggctgag
     8461 atccgcgaaa cagtagcgcg tgaaaaacgc cgccgtggcg aattgggttt tgatgacatg
     8521 ttaagtcggc tcgattccgc gctgcgtagc gaaagcggtg aggtgttggc agcggcgatc
     8581 cgtacgcgat tcccggtggc aatgatcgat gaatttcagg ataccgaccc ccagcagtac
     8641 cgaatttttc gccgtatctg gcaccatcag ccggaaaccg cattgttgct gattggcgac
     8701 ccgaagcagg ccatatatgc attccggggt gcggatatct tcacttatat gaaggcgcgt
     8761 agtgaagttc acgcccacta cactttagac accaactggc gctccgcacc tggaatggtg
     8821 aacagtgtga acaagctttt cagccagact gatgacgcgt tcatgtttcg cgaaataccg
     8881 tttattccag tgaaatcagc cgggaaaaat caggcgttac gttttgtatt taaaggtgaa
     8941 acgcagcctg cgatgaaaat gtggctgatg gaaggcgaaa gctgcggcgt tggcgactat
     9001 caaagtacca tggcgcaggt atgtgctgcg caaatccgcg actggctaca agccggacag
     9061 cggggcgaag cgttgctgat gaacggcgac gacgcgcgtc cggtgcgtgc ttcggacatc
     9121 agtgtgctgg tgcgcagccg ccaggaggcc gcccaggtgc gcgatgcctt aacgttgctg
     9181 gaaatccctt ccgtttacct ttcgaaccgc gacagtgttt ttgaaactct ggaagcgcag
     9241 gaaatgcttt ggttattgca ggcggtgatg acgcccgaac gtgagaacac cctgcgtagt
     9301 gcgctggcaa cgtcaatgat ggggctgaac gcgctggata tcgaaacgct gaataatgac
     9361 gaacatgcgt gggatgcggt agttgaagag ttcgatggtt atcggcaaat ctggcgcaaa
     9421 cgtggcgtta tgccgatgct gcgggcgctg atgtcggcgc gtaacattgc agaaaacttg
     9481 ctggcaacgg caggcggtga gcggcgtctt accgatatct tgcatatcag cgaactgcta
     9541 caagaagccg gaacgcagct ggaaagtgaa catgcgctgg tacgctggtt atcgcaacat
     9601 atcctcgagc cagacagtaa tgcctccagc caacaaatgc gcctcgaaag tgataaacat
     9661 ctggtgcaga ttgtcacgat ccataaatcg aaagggctgg aatatccgct ggtctggttg
     9721 ccatttatta ccaatttccg cgtccaggat caggcgtttt atcacgatcg ccactcgttt
     9781 gaggcagttt tggatcttaa tgctgcgcca aaaagcgtcg acctcgcgga ggtcgaacgt
     9841 ctggcggaag atctgcgttt gctttacgtg gcgctgacgc gttcggtttg gcattgcagt
     9901 ctcggcgttg caccgctggt gcgccgtcgt ggcgataaaa aaggtgacac cgacgtccac
     9961 caaagtgcgc tcgggcgttt gctgcaaaaa ggggaaccgc aagatgcggc agggcttcgc
    10021 acctgtattg aagcgttatg cgatgatgat attgcctggc aaacggcaca aactggtgat
    10081 aaccagccct ggcaggttaa tgatgcttta actgcagaac tgaatgcgag gacactacaa
    10141 cgattgcccg gcgataactg gcgtgtcacc agctactccg gcttgcagca gcgtggtcac
    10201 ggtatcgctc aggatctgat gccacggctg gatgttgatg ccgcaggcgt ggtcagcgtc
    10261 gttgaagaac cgacgttaac accgcatcag ttcccgcgcg gtgcgtcacc ggggacattc
    10321 ttgcacagtt tgtttgaaga cctcgatttt acccagccgg ttgacccgaa ctgggtacag
    10381 gaaaaactgg aactcggcgg ctttgaatcg cagtgggaac cggtgttgac cgagtggatc
    10441 acggctgtcc tccaggcacc tctcaatgaa aagggggtta gcctgagtca gctttccgac
    10501 cgcgataaac aggtggagat ggagttttac ctgccgatta gcgaaccgct catcgccagc
    10561 cagcttgatg cactaattcg ccagtttgat ccgctatccg ctggctgccc gccgctggag
    10621 ttcatgcagg tacgcggcat gttaaaaggc tttatcgacc tagtattccg ccacgaaggg
    10681 cgttattacc tgctcgacta taaatccaac tggctgggtg aagacagttc ggcttacacc
    10741 caacaggcta tggcagcagc gatgcaggca caccgctatg atctgcaata tcagctttat
    10801 accctggcgc tgcatcgtta tctgcgccat cgcattgctg attacgacta tgatcgtcac
    10861 tttggcggcg ttatctatct gttcctgcgt ggcgttgata aagaacatcc gcaacaaggg
    10921 atttacacaa cccgacccaa cgccgggttg attgccctga tggatgagat gtttgccggt
    10981 atgaccctgg aggaggcgta atgaaattgc aaaagcaatt actggaagct gtggagcaca
    11041 aacagctacg cccgctggat gtgcaatttg ccctgaccgt ggcgggagat gaacatcctg
    11101 ccgtcaccct cgcggcggca ctgttaagtc atgatgccgg agagggacac gtctgtttgc
    11161 cgctttcacg actggaaaat aacgaggcgt cgcatccgct gttggcgacc tgtgtcagtg
    11221 aaatcggtga gctacaaaat tgggaagaat gcttgctggc ttctcaagcg gtcagcaggg
    11281 gagatgaacc cacgccgatg atcctctgtg gcgatcgtct ttatttgaat cgcatgtggt
    11341 gtaacgagcg gacggtagcg cgcttcttca atgaggtgaa tcatgccatt gaggttgatg
    11401 aagctctact ggcgcaaacc ctggacaaac tttttccagt aagcgatgaa attaactggc
    11461 aaaaagttgc agcggcagtg gcgctgacgc ggcggatctc ggtgatttcc ggcggcccag
    11521 gcaccggtaa aacgaccacc gtggcgaagt tgctggcagc gttaattcaa atggccgacg
    11581 gcgaacgctg ccgtatccgt ctggctgcac caacgggtaa agctgccgcg cgcttaaccg
    11641 aatctctcgg caaggctttg cgacagttac cgctgaccga tgaacaaaag aaacgcattc
    11701 cggaagatgc cagcactttg caccgattgc tgggcgcgca gccgggtagc cagcgtttac
    11761 gtcatcatgc cggtaacccg ctgcatcttg atgtgctggt ggtagatgaa gcgtcaatga
    11821 tcgatctgcc tatgatgtcg agactgatcg acgccttgcc cgatcatgcg cgagtgatct
    11881 ttctcggcga tcgtgatcaa ctggcctcgg ttgaggctgg ggctgtgctg ggcgatatct
    11941 gcgcttatgc caacgcgggc tttaccgccg agcgtgccag gcagctaagc cgcctgacgg
    12001 ggactcacgt tccggcagga accggcacag aagcggcatc tttgcgcgac agtctctgcc
    12061 tgctgcaaaa aagctatcgt ttcggcagcg attctggcat tggtcagtta gctgcggcga
    12121 tcaaccgtgg tgataaaacg gcagtgaaaa ccgtttttca gcaggatttt actgatatcg
    12181 aaaaacgact tttacagagc ggcgaagatt atattgcgat gcttgaggaa gctcttgcgg
    12241 gttatggacg ttatctggat ctgctgcaag cgcgtgccga gccggattta atcattcagg
    12301 cgttcaatga gtaccaactt ttgtgcgccc tgcgggaagg gccgtttggc gtggctggac
    12361 tgaatgagcg aattgagcag tttatgcaac agaagcgcaa aattcatcgt catccgcact
    12421 ctcgttggta cgaaggtcga ccggtgatga ttgcccgtaa tgacagcgcg cttgggttgt
    12481 ttaatggcga tatcggtatt gcgctggatc gcgggcaggg gacgcgcgtc tggtttgcga
    12541 tgccggacgg caatattaag tctgtgcaac cgagtcgctt gccagagcac gaaactacgt
    12601 gggcgatgac ggtacataaa tcgcagggat cggagttcga ccatgcggcg ttgattttac
    12661 cgagccaacg cacgccggta gtaacgcgag agctggtata caccgcggtg acccgcgcgc
    12721 gtcgccgtct gtcgctgtat gccgatgagc gtatattaag tgcggcaatc gccactcgta
    12781 ctgagcggcg cagtggtctg gcggcgttgt ttagttcgcg ggaataaacg taattgccgg
    12841 atgcgatgca cgagtgttac gcatgtcgca tccgacaatt ttcatcgctt accctaaatc
    12901 cgccatcaac actttggatt tacgctggta gttgtacaac tgctttttgc tctcgggcag
    12961 taaatcaata tccaccgggg taaatccacg ttcctggaac cagtgaatac tgcgcgtggt
    13021 cagcacaaac aatttgctta agccgctctg cttcgcctga gcggcaatgc gttccagcag
    13081 aacctcgccc cgtgatgaac tgcggtaatc cgggtgaact gccacacagg ccatttcccc
    13141 aatcttctct tccgggaacg gatagagcgc ggcgcaggca atagtcgtgt tatcgcgctg
    13201 aataatggtg aatttgtcga tttccatctc cagctgctcg cgagaacggc gcaccagaat
    13261 accttgctgc tccagcgggc gaatcaactc cagaataccg ccaatatcgt tgattgttgc
    13321 gcgacgaatc tgctcggcgc tttccatcac aatctgcgta ccgataccgt cgcgtgagaa
    13381 caactcttgc aacagcgcgc catcttcctg ataactgatt aaatgacagc gacgcacgcc
    13441 gctgcggcag gctttcactg cgccacgcaa aaagcgcacc gtaccggagt tgtaatcgcc
    13501 tttctcttcc tgggcttcta cccgcgcttg cgcttcgtta gggaaaagtt ctgagacaat
    13561 atcaccgtcg tcattagtga cgccctgtga agagcaaaaa ccaatcatct tctcagcttt
    13621 cagtttgatg gccagttgag tggcaatctc ttccgaggtc agattaaagc tctcgccagt
    13681 gactgaaaca gcgaccggcc ccattagcac tattgcaccg ctgtccagtt gacgatggat
    13741 cgcgtcttca tcaatccgcc ggatacgccc gctatggcag taatccacgc cgtcatcgac
    13801 gcccagcggc tgggcaataa taaaattgcc actgacgacg ttgatatgcg cgccctgtag
    13861 cggcgtgtta ttgagactca tcgacaggcg agcagtgatg tccagttgca atgttcccgc
    13921 agcctgcttc accagttcca gtgttttggc gtcggtcaca cgtatattct tgtgatacag
    13981 cggttcgtgg tgatgcgcgg ccagatttgc gtcgatctgc ggacgtgcgc catagaccac
    14041 caccagacgg atgccgaggc tgtgcaacaa cccgatatca ttaacgatac tggagaaatt
    14101 ctcatgctca atggcttcac cgccgagcat gatgacaaac gtttttcccc ggtgggtatt
    14161 gatataggga accgaatggc ggaatccctc gaccagctcg gttttacgtt cctttaccac
    14221 ggcacacccc tttgcatgat tattctaaat tagtgtattt ttattctgtt ttttcgcagg
    14281 gtgcaagtgt aaattttatg cgagagcgac ttttttatca gtaatgccgt gaatataaaa
    14341 agaatgttta ccgtttatta gatgacagat tatgcgtctt tcgctaaagt ttccggtcaa
    14401 attagtcgtt tacttgttac acagcttaga tttcttttgc tcgggagagg catgtcagga
    14461 tccaacactg caatcagccg tcgtcgttta ctgcaaggcg cgggtgccat gtggctattg
    14521 agcgtaagtc aggtcagtct ggctgcggtc agccaggtcg tggcggtgcg cgtctggcct
    14581 gcgtccagct acacccgtgt gacggtagaa tcaaatcgtc agctgaaata taagcagttc
    14641 gcgttgagta accctgaacg cgtggtggtg gatatcgaag atgtaaacct gaactcggta
    14701 ctcaagggga tggcggcaca aattcgtgca gacgacccgt tcatcaagtc ggcgcgcgtc
    14761 gggcaatttg acccgcagac cgtacggatg gtttttgaat taaagcaaaa cgtaaaaccg
    14821 cagctgtttg cccttgcgcc ggtcgccggg tttaaagagc gtctggtgat ggacctctat
    14881 ccggccaatg cacaggatat gcaggacccg ctgctggcgc tgctggagga ttacaacaaa
    14941 ggcgacctcg aaaagcaggt gccgccagca caaagtggtc cacaaccggg taaagcaggg
    15001 cgcgatcgtc ctattgttat tatgcttgac cctggccacg gcggcgaaga ctccggtgcg
    15061 gtggggaaat acaaaacgcg cgaaaaagac gtggtattgc aaatagctcg ccgtctgcgc
    15121 tctctgatcg agaaagaggg caatatgaag gtgtacatga cgcgcaatga agacatcttc
    15181 attccgttgc aagtgcgcgt agcaaaagcc cagaaacagc gtgctgacct gtttgtctct
    15241 atccatgccg acgcctttac cagtcgtcag ccgagcggtt cctctgtgtt tgcgctctca
    15301 accaaaggtg caaccagtac tgcggcaaaa tatctggcac aaacccagaa cgcctcggac
    15361 ttgattggtg gcgtgagcaa aagcggtgac cgctatgtcg accacaccat gttcgatatg
    15421 gtgcagtcgc tgaccattgc cgacagcctg aagtttggta aagcggtact gaataagctc
    15481 ggtaaaatca acaagctgca taaaaatcaa gttgaacagg ccgggtttgc cgtactaaag
    15541 gcaccagata ttccctccat tctggtcgaa acggcgttta ttagtaacgt tgaggaagag
    15601 cgtaaactga aaacggcgac tttccagcag gaagttgcgg agtctattct tgcggggatt
    15661 aaagcgtatt ttgccgatgg ggcgacgctg gcgagaaggg gatgatgttt ttaatttatt
    15721 caatgaattt atgtttcatt gaataaatat tatttacata aatgttgaac gatggttttg
    15781 tgactgctgt cgaatatttg aatatcggct taaaaaataa gtctgtcatc tcttttatta
    15841 agcacaattc cgtgtaaggt atacgcatta gttaattatc ttgcaactgt taaatcaggc
    15901 aaggcaatgt ttgaagtaat tattacttct gacatgcctt gccttttttt tggggagcca
    15961 tggaatgatc atcgaaaaag tcatgaacaa taattgtgta caggcatcgg tgaacggaca
    16021 ggaggttatc atttctgggc ctggcgttgg ttacaataaa aatatggtat gtcggtccct
    16081 gagcatcctg caaaccggat ttttatgtca gaaatgagca aaaaaataaa ctctacaaat
    16141 tgattgagca tgtgggtatt gagtatattt ttgttgccga aaagatagtg cattatgcgg
    16201 agagtaatct cgaaaaaaaa ctcaatccat cgctactact gattcttgct gatcacattt
    16261 cgaatgcaat atcccgagtc gtctcaggca tacaaattaa taatgttttc cttgaggaaa
    16321 tcaaagcgtt gtacaaagca gagtatgcaa taagtcgtga tgcattaaca atcattaatg
    16381 agcaatttag cgttcaacta ccggatgatg agattggttt tatagcattg catattttaa
    16441 ataattatga aaattcagtt gattatgaat cagtaaggat tattgagctg tctcaaaaaa
    16501 tcacggagct tattgaagtt gtttataaca gaagggtgga cagaagttca tttaactact
    16561 ccagatttat gatgcacctt aaatattttt ctagtcgtgt gttatgtaat gaaaaaataa
    16621 aacagaaaaa tattggtgat atctatgagc agtttcttga aaaagatttt cagttacaac
    16681 gtgccattca tgaaattgaa agatatctgt acgcaacttt taaatatgat ttgattctgg
    16741 aagagaaact atatctttct attcgcatca aagtattaat ggactaatta tacataacat
    16801 tttcatgaga taaccagtat gaaacaaaag aaatcctgga gtttttttca gagcctgggg
    16861 aaggcattta tgtatcccat cgctctgtta agtgtatgtg gtatgatgtt agggctggga
    16921 agtggtttag ccagcgatga tatggcaaaa ttcattccag tgttggctat tccgttaatt
    16981 aaaaccatac ttgattttat tgttagcctt ggtttgtttg ccttcgttaa tttacctgta
    17041 ttgtttgcga tagctatacc tttgggatta ttaaaagaga aagatgataa agcctatggc
    17101 gctttttctg gcttaattgg ctttatggcg atgcatcttg gaacgaactt ttatcttaaa
    17161 cagcacgact tattggtagc tgctgaccaa atgtcgacac atgggcaaac catcatactc
    17221 gggatccagt cctacaatac cagcgtgttg ggtgggattg tggcagggtt attagtcgcc
    17281 agcatgtata aaaagatcgt taacttacgt attcctgaat aattagggtt ttatagtggc
    17341 ccacgccttg tgcctatcat tacactgatt gtgatgagtg gatttggtct gatcattcct
    17401 tttatctggc cgccattttt caatcttttc atgctcattg gtcactggat ttcaacttcc
    17461 ggtcctgttg gttatttctt ctatgctgtt gccgaacgcg tgacgatacc ttttggctta
    17521 aatcacttgg tgacatcagt tttccgcttt accccaatcg gcggatcggc agtgattggc
    17581 ggtgaagagt attacggcac cctgaacatg tttatggcat acgtcaaaga gaatgcggtc
    17641 attccgctgg atttggcggg gaaaatggag cagggcaaac tgatgattca gtatggtctg
    17701 gctggagccg cgctggcgat gtatcgcact gctcatgctc aaaacagaag ggctatcaaa
    17761 gcattgctga tttccggtgt gctcacggta attattggcg gcgtcagcga gccgattgaa
    17821 tttctgttct tatttgtcag cccgctgttg tttgtcttcc atgcctttat gaatggattg
    17881 gctaacatgg ttctgccata tatgggcgtg aagatgggct ttactggcga tctgattcaa
    17941 tttattagct ttggtgtctt acgtggcaca agaacgggat ggccattagc ggtatgtgtt
    18001 gaagtggctt atttcttcat ttattacttt gtgttccgtt ggaccattct caaatttaac
    18061 ctgatgactg taggccgtga agagtccagt cctgtcacgc tgaacgctca cgaagaaact
    18121 gcaatagcta acatcccagt tcatgataaa tcagagttgc aggcagcgga gcaaatggtt
    18181 aaggctctgg gtggtaaaga aaatattaaa tcactggata attgtgtaac tcgtttgcgt
    18241 ttaactatcg cggatatggg attgataaat gaggctgcaa taaaaagggc cggaggaatt
    18301 gcggttgtga aacttgatca aaatacctta caagtcatta tcggtacaaa agtcatcgcc
    18361 ctacgtcggg atatggataa ttacatgggg atatgttgat ggatattttt aatacctcaa
    18421 tttctcgtaa aggaacatat tgcacacaat gggacttttg tgaagacaga tttggtgtaa
    18481 aagatgtatt accattctct atttcagata tggatcttcc gataccggaa gctatcatca
    18541 gaacattaaa aaaacgtctg gaacacccga ttttagggta cagtcgttgg cagcatgatg
    18601 actatctgaa ttcgatagtc aattggtatc atcaacaata taaaacagag attcaaccag
    18661 aatggatcac ctatagccca agcgtgatgt attcaatatc taaggcaata gaaatattga
    18721 cattgaatgg agataatatt ctcattttca cgcctgttta taacgcattt tttgatgtga
    18781 ttaagcataa tggtcgaaac atgctaacaa cctctttgat gaaagaaaat gggagaggct
    18841 acgttatcaa ctggcaagac tttgagctta aaattaaaag cgcgaagatg gtgttattat
    18901 gtaatcctca taacccgaca ggaacggtct ggtcggaaga cgatcttcac agaatcgcag
    18961 catgctgtgc aaggcataat atttggttat gttcagatga aatacatagt gattttgttt
    19021 ttaatcatag tttcacgtca gcgctaacaa taaaagatga caaagtggtg gtgtttaatt
    19081 cgatttcgaa aacatttaat gttcctgcgc taaccggatc atatatgatt tcaactgacg
    19141 ataattttaa tcataagttc agaacgatat cgaggtatcg cgatttcgta aactccccat
    19201 cagtactgaa tgtaattgcg accattgttg cctataatga atgtgaagaa tggttaaagt
    19261 cattaaaggt acatattgcc tctaacattc aatttacctt gcagtattta aatgaaaata
    19321 ttccggaatt gatcgtatgg ccagctgagg gctgctattt ttcgtgggtt gattgctcgg
    19381 cccttggtta tccctttgat aaattttacc gtcgattaat taacgaaggg agagtaggta
    19441 ttatggcggg gcatgtttat ggtactgaag gagagggcta tctgcgtctt aatctggcct
    19501 gcagtcgaga aaaattatat atggggcttg cgcgccttgc gagtgtaatt aaaaatatta
    19561 atcaggaaaa agaaaatgaa caatacggat cttatccatc ttattaaacg ttttatgcgt
    19621 aacgaacata aagcagtaga agaggttatt gattcccccc tttcggaagt cgcgaattta
    19681 attaaaatat tacaatcttg ccagggaaaa gttgttttta ttggtgttgg gaaatctggc
    19741 attattgcca gaaaacttgc tgcaacattt gccagcaccg gaactccctc gttttttgtt
    19801 cacggtacgg aagcggtaca cggcgacctt gggatggtgg cgaaagacga tgttgttatt
    19861 cttatttcaa acagtggtga gacggcggaa atcctggcga cactgcctag tttgaaaaaa
    19921 atgggtaatt atttgatctc ttttatccgc agtcatcact catcgcttgc gataagttgt
    19981 gatttatctg ttgaaatccc cgtcaaaagt gaggcggata attta
//
LOCUS       DAJVSY010000071        19878 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.071, whole genome shotgun sequence.
ACCESSION   DAJVSY010000071 DAJVSY010000000
VERSION     DAJVSY010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19878)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19878)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19878
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.071"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            57..833
                     /gene="eutC"
                     /locus_tag="OQQ19_002248"
     CDS             57..833
                     /gene="eutC"
                     /locus_tag="OQQ19_002248"
                     /EC_number="4.3.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000200160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutC"
                     /protein_id="HCS1803857.1"
                     /translation="MTSESCALDLGSAEAKAWIGVENPHRADVLTELRRSTVARVCTG
                     RAGPRPRTQALLRFLADHSRSKDTVLKEVPEEWVKAQGLLEVRSEISDKNLYLTRPDM
                     GRRLCAEAVEALKAQCVANPDVQVVISDGLSTDAITVNYEEILPPLMAGLKQAGLKVG
                     TPFFVRYGRVKIEDQIGEILGAKVVILLVGERPGLGQSESLSCYAVYSPRMATTVEAD
                     RTCISNIHQGGTPPVEAAAVIVDLAKRMLEQKASGINMTR"
     gene            843..1502
                     /gene="eutL"
                     /locus_tag="OQQ19_002249"
     CDS             843..1502
                     /gene="eutL"
                     /locus_tag="OQQ19_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutL"
                     /protein_id="HCS1803858.1"
                     /translation="MPALDLIRPSVTAMRVIASVNAEFARELKLPPHIRSLGLISADS
                     DDVTYIAADEATKQAMVEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDA
                     MVAHIENGAAFQWANDAENTAFLAHVVSRTGSYLSSTAGITLGDPMAYLVAPPLEATY
                     GIDAALKSADVQLVTYVPPPSETNYSAAFLTGSQAACKAACNAFTDAVLEIARNPIQR
                     A"
     gene            1515..2015
                     /gene="eutK"
                     /locus_tag="OQQ19_002250"
     CDS             1515..2015
                     /gene="eutK"
                     /locus_tag="OQQ19_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutK"
                     /protein_id="HCS1803859.1"
                     /translation="MINALGLLEVDGMVAAIDAADAMLKAANVRLLSHEVLDPGRLTL
                     VVEGDLAAGRAALDAGCAAAMRTGRVISRKEIGRPDDDTQWLVTGFNRQPKQPVREPD
                     APVIVAESADELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRSSR
                     YRLKPH"
     gene            2061..3185
                     /gene="eutR"
                     /locus_tag="OQQ19_002251"
                     /pseudo
     CDS             2061..3185
                     /gene="eutR"
                     /locus_tag="OQQ19_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001735543.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator EutR"
     gene            complement(3119..4018)
                     /gene="hemF"
                     /locus_tag="OQQ19_002252"
     CDS             complement(3119..4018)
                     /gene="hemF"
                     /locus_tag="OQQ19_002252"
                     /EC_number="1.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-dependent coproporphyrinogen oxidase"
                     /protein_id="HCS1803860.1"
                     /translation="MKPDAHQVKQFLLNLQDTICQQLTAVDGAEFVEDSWQREAGGGG
                     RSRVLRNGGVFEQAGVNFSHVHGEAMPASATAHRPELAGRSFEAMGVSLVVHPHNPYV
                     PTSHANVRFFIAEKPGAEPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCLPFGEDVY
                     PRYKKWCDDYFYLKHRNEQRGIGGLFFDDLNTPDFDHCFAFMQAVGKGYTDAYLPIVE
                     RRKAMAYGERERNFQLYRRGRYVEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEY
                     DYQPKDGSPEAALSEFIKVRDWV"
     gene            complement(4022..4891)
                     /gene="amiA"
                     /locus_tag="OQQ19_002253"
     CDS             complement(4022..4891)
                     /gene="amiA"
                     /locus_tag="OQQ19_002253"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiA"
                     /protein_id="HCS1803861.1"
                     /translation="MSTFKPLKTLTSRRQVLKAGLAALTLSGMSQAIAKDEPLKTSNG
                     HSKPKAKKSGGKRVVVLDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGIDA
                     RLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMA
                     KYLSERENRADEVAGKKATDKDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPVHKL
                     HSRNTEQAAFVVLKSPSVPSVLVETSFITNPEEERLLGTAAFRQKIATAIAEGVISYF
                     HWFDNQKAHSKKR"
     gene            5105..5530
                     /locus_tag="OQQ19_002254"
     CDS             5105..5530
                     /locus_tag="OQQ19_002254"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311332.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family acetyltransferase"
                     /protein_id="HCS1803862.1"
                     /translation="MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSL
                     FLVAEVNGEVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPK
                     IQINVPEDNDMVLGMYERLGYEHADMLSLGKRLIEDEEY"
     gene            5517..5966
                     /locus_tag="OQQ19_002255"
     CDS             5517..5966
                     /locus_tag="OQQ19_002255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708284.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2919 domain-containing protein"
                     /protein_id="HCS1803863.1"
                     /translation="MKSTEFHPVHYDAHGRLRLPLLFWLVLLLQARTWVLFIIAGASR
                     EQGTALLNLFYPDHDNFWLGLIPGIPAVLAFLLSGRRASFPRTWHVLYFLLLLAQVVL
                     LCWQPWLWLNGESVSGIGLALVVADIVALIWLLTNRRLRACFNEEKE"
     gene            6173..6748
                     /locus_tag="OQQ19_002256"
     CDS             6173..6748
                     /locus_tag="OQQ19_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpoE-regulated lipoprotein"
                     /protein_id="HCS1803864.1"
                     /translation="MKSLRLMLCAMPLMLTGCSTMSSVNWSAANPWNWFGSSTKVSEQ
                     GVGELTASTPLQEQAIADALDGDYRLRSGMKTANGNVVRFFEVMKGDNVAMVINGDQG
                     TISRIDVLDSDIPADTGVKIGTPFSDLYSKAFGNCQKADGDDNRAVECKAEGSQHISY
                     QFRGEWRGPEGLMPSDDTLKNWKVSKIIWRR"
     gene            6844..7743
                     /gene="yfeX"
                     /locus_tag="OQQ19_002257"
     CDS             6844..7743
                     /gene="yfeX"
                     /locus_tag="OQQ19_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311329.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphyrinogen peroxidase"
                     /protein_id="HCS1803865.1"
                     /translation="MSQVQSGILPEHCRAAIWIEANVKGEVDALRAASKTFADKLATF
                     EAKFPDAHLGAVVAFGNNTWRALSGGVGAEELKDFPGYGKGLAPTTQFDVLIHILSLR
                     HDVNFSVAQAAMEAFGDCIEVKEEIHGFRWVEERDLSGFVDGTENPAGEETRREVAVI
                     KDGVDAGGSYVFVQRWEHNLKQLNRMSVHDQEMMIGRTKEANEEIDGDERPETSHLTR
                     VDLKEDGKGLKIVRQSLPYGTASGTHGLYFCAYCARLHNIEQQLLSMFGDTDGKRDAM
                     LRFTKPVTGGYYFAPSLDKLMAL"
     gene            complement(7801..9105)
                     /gene="pbp4b"
                     /locus_tag="OQQ19_002258"
                     /pseudo
     CDS             complement(7801..9105)
                     /gene="pbp4b"
                     /locus_tag="OQQ19_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311328.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin binding protein PBP4B"
     gene            complement(9110..10534)
                     /gene="murP"
                     /locus_tag="OQQ19_002259"
     CDS             complement(9110..10534)
                     /gene="murP"
                     /locus_tag="OQQ19_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N-acetylmuramic acid transporter subunit
                     IIBC"
                     /protein_id="HCS1803866.1"
                     /translation="MAKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVD
                     PNIKTLEGVKSVILTSDQVQVVFGPGKAHRAAKAMSELLGEAPVQDAAEIAAQNKRQL
                     KAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDALN
                     FMKVFSKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALFLLGYNPAATTGYYAGFHDF
                     FGLPIDPRGNIIGVLIAAWACARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIM
                     PLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQGFIPVYLALMDSQGFNS
                     LFPILSMAGAGQVGAALALYWRSQPHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMK
                     PFVTACLGGAAGGLFIGLIAWWGLPMGLNSAFGPSGLVALPLMTSAQGILPAMAVYAG
                     GILVAWVCGFIFTTLFGCRNVNLD"
     gene            complement(10538..11434)
                     /gene="murQ"
                     /locus_tag="OQQ19_002260"
     CDS             complement(10538..11434)
                     /gene="murQ"
                     /locus_tag="OQQ19_002260"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HCS1803867.1"
                     /translation="MQLEKMITEGSNAASAEIDRVSTLEMCRIINDEDKTVPLAVERV
                     LPDIAAAIDVIHAQVSGGGRLIYLGAGTSGRLGILDASECPPTYGVKPGLVVGLIAGG
                     EYAIQHAVEGAEDSREGGVNDLKNINLTAQDVVVGIAASGRTPYVIAGLEYARQLGCR
                     TVGISCNPGSAVSTTAEFAITPIVGAEVVTGSSRMKAGTAQKLVLNMLSTGLMIKSGK
                     VFGNLMVDVVATNEKLHVRQVNIVKNATGCNAEQAEAALIACERNCKTAIVMVLKNLD
                     AAEAKKRLDQHGGFIRQVLDKE"
     gene            11598..12455
                     /gene="murR"
                     /locus_tag="OQQ19_002261"
     CDS             11598..12455
                     /gene="murR"
                     /locus_tag="OQQ19_002261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MurR"
                     /protein_id="HCS1803868.1"
                     /translation="MLYLTKISNAGSEFTENEQKIADFLQANVSELQSVSSRQMAKQL
                     GISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNTTALHLHSSITSDDSLEVIA
                     RKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKI
                     GYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCVEAARKQGATVIAITSL
                     ADSPLRRLAHFTLDTVSGETEWRSSSMSTRTAQNSVTDLLFVGLVQLNDVASLKMIQR
                     SSELTQRLK"
     gene            12584..13375
                     /gene="ucpA"
                     /locus_tag="OQQ19_002262"
     CDS             12584..13375
                     /gene="ucpA"
                     /locus_tag="OQQ19_002262"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase UcpA"
                     /protein_id="HCS1803869.1"
                     /translation="MGKLTGKTALITGALQGIGEGIARTFARHGANLILLDISPEIEK
                     LADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMS
                     DDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKA
                     AIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPM
                     RRLADPLEVGELAAFLASDESSYLTGTQNVIDGGSTLPETVSVGI"
     gene            13679..14695
                     /gene="cysP"
                     /locus_tag="OQQ19_002263"
     CDS             13679..14695
                     /gene="cysP"
                     /locus_tag="OQQ19_002263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate/sulfate ABC transporter
                     substrate-binding protein CysP"
                     /protein_id="HCS1803870.1"
                     /translation="MAVNLLKKNSLALVASLLLAGHVQATELLNSSYDVSRELFAALN
                     PPFEQQWAKDNGGDKLTIKQSHAGSSKQALAILQGLKTDVVTYNQVTDVQILHDKGKL
                     IPADWQSRLPNNSSPFYSTMGFLVRKGNPKNIHDWNDLVRSDVKLIFPNPKTSGNARY
                     TYLAAWGAADKADGGDKAKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFE
                     SEVNNIRKQYEAQGFEVVIPKTNILAEFPVAWVDKNVQANGTEKAAKAYLNWLYSPQA
                     QTIITDYYYRVNNPEVMDKLKDKFPQTELFRVEDKFGSWPEVMKTHFTSGGELDKLLA
                     AGRN"
     gene            14695..15528
                     /gene="cysT"
                     /locus_tag="OQQ19_002264"
     CDS             14695..15528
                     /gene="cysT"
                     /locus_tag="OQQ19_002264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000458418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter permease
                     CysT"
                     /protein_id="HCS1803871.1"
                     /translation="MFAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSW
                     AQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDL
                     PFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQ
                     PVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFI
                     AGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRVVG
                     H"
     gene            15528..16403
                     /gene="cysW"
                     /locus_tag="OQQ19_002265"
     CDS             15528..16403
                     /gene="cysW"
                     /locus_tag="OQQ19_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026168.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter permease
                     CysW"
                     /protein_id="HCS1803872.1"
                     /translation="MAEVTQLKRYDARPINWGKWFLIGIGMLVSAFILLVPMIYIFVQ
                     AFSKGLMPVLQNLADPDMLHAIWLTVMIALIAVPVNLVFGILLAWLVTRFNFPGRQLL
                     LTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQIMFSWPGMVLVTIFVTCPF
                     VVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEF
                     GAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRL
                     ENQEKRAQQEEHHEH"
     gene            16393..17490
                     /gene="cysA"
                     /locus_tag="OQQ19_002266"
     CDS             16393..17490
                     /gene="cysA"
                     /locus_tag="OQQ19_002266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter ATP-binding
                     protein CysA"
                     /protein_id="HCS1803873.1"
                     /translation="MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTL
                     LRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVL
                     PRRERPNAAAIKAKVTKLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL
                     DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEATEVADRVVVMSQGNIEQA
                     DAPDQVWREPATRFVLEFMGEVNRLQGTIRGGQFHVGAHRWPLGYTPAYQGPVDLFLR
                     PWEVDISRRTSLDSPLPVQVLEASPKGHYTQLVVQPLGWYNEPLTVVMHGDDAPQRGE
                     RLFVGLQHARLYNGDERIETRDEELALAQSA"
     gene            17624..18535
                     /gene="cysM"
                     /locus_tag="OQQ19_002267"
     CDS             17624..18535
                     /gene="cysM"
                     /locus_tag="OQQ19_002267"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HCS1803874.1"
                     /translation="MSTLEQTIGNTPLVKLQRMGPNNGSEVWLKLEGNNPAGSVKDRA
                     ALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA
                     MRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQ
                     QTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPAEYLP
                     GIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKANPGAVVV
                     AIICDRGDRYLSTGVFGEEHFSQGAGI"
     gene            complement(18538..18906)
                     /locus_tag="OQQ19_002268"
     CDS             complement(18538..18906)
                     /locus_tag="OQQ19_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfeK family protein"
                     /protein_id="HCS1803875.1"
                     /translation="MKKIICLVITLLMTLPAYAKLTAHEEARINAMLEGLSQKKDLIF
                     VRNGDEHTCDEAVSHLRLKLGNTRNRIDTAEQFIDKVASSSSITGKPYIVKIPGKSDE
                     NAQPFLHALIAQTDKTVPAQ"
     gene            19011..19862
                     /gene="pdxK"
                     /locus_tag="OQQ19_002269"
                     /gene_synonym="thiJ"
     CDS             19011..19862
                     /gene="pdxK"
                     /locus_tag="OQQ19_002269"
                     /gene_synonym="thiJ"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine/pyridoxal/pyridoxamine kinase"
                     /protein_id="HCS1803876.1"
                     /translation="MSSLLLFNDKSRALQADIVAVQSQVVYGSVGNSIAVPAIKQNGL
                     NVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQ
                     IKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNI
                     FELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITSASGNEENQEMQVVVVSADSVNV
                     ISHSRVKTDLKGTGDLFCAQLISGLLKGKALNDAVHRAGLRVLEVMRYTQQHESDELI
                     LPPLAEA"
BASE COUNT         4576 a         5042 c         5610 g         4650 t
ORIGIN      
        1 aaacggcccc cgcgctgtca gaagcaaagt gcaccaccac cacctgtgcg gcaccggtga
       61 cctcggaaag ctgcgcgctg gatttaggtt ctgcggaagc aaaagcgtgg attggtgttg
      121 aaaacccgca tcgcgcagac gtattaacag aactgcgtcg cagcaccgtg gcccgcgttt
      181 gtaccggtcg tgccggtccg cgtccgcgta cccaggcgtt gctgcgtttc ctggccgatc
      241 actctcgttc gaaagatacc gtactgaaag aagtgccgga agagtgggtg aaagcgcagg
      301 gcttgctgga agtacgctcc gaaattagcg acaaaaatct ctacctgact cgcccggata
      361 tgggccgccg cctgtgtgca gaagctgttg aagcgctgaa agcacagtgt gttgctaatc
      421 cggacgtaca ggtcgttatt tctgatggcc tgtcaactga tgccatcacc gtgaactacg
      481 aagagatcct gccgccgctg atggcgggcc tgaaacaggc cgggctgaaa gtcggcacgc
      541 cattctttgt tcgttatggt cgcgtgaaga ttgaagatca gatcggtgag atcctcggcg
      601 cgaaagtggt gatcctgctg gtgggggaac gtccggggtt gggtcagtca gaaagcctct
      661 cctgttacgc cgtttactcg ccgcgtatgg cgaccaccgt tgaggccgat cgcacctgca
      721 tctctaacat tcaccagggc ggcacgccgc cggttgaagc cgcagccgtc attgtggatt
      781 tggcgaaacg tatgctggag cagaaagcat ccggcatcaa catgacccga taaggaggca
      841 tcatgccagc tttagatttg attcgaccgt cggtaaccgc catgcgggtg attgcctccg
      901 ttaacgctga atttgcgcgt gaactaaaat tgccgccgca tattcgtagc ctcgggctga
      961 tttctgctga ttccgatgac gtcacctaca ttgcggctga cgaagcgacc aagcaggcga
     1021 tggtcgaagt ggtatatggc cgctcgctgt atgcgggagc agcacacgga ccgtcaccga
     1081 ctgccggtga agtgctgatt atgcttggtg ggccaaaccc ggcggaagtg cgtgctggtc
     1141 tggatgcgat ggttgcgcat attgaaaatg gcgctgcttt ccagtgggct aatgacgcag
     1201 aaaacaccgc attcctggca catgtagttt cgcgtaccgg ttcttatctc tcatcaaccg
     1261 ccgggatcac gcttggcgat ccgatggcgt atctggtggc accgccgctg gaagcgacct
     1321 acggcattga tgcagcgttg aaatctgccg acgtacagct ggtgacctat gtcccgccac
     1381 cgtctgaaac caactactcg gcagcatttt taaccggtag ccaggccgcg tgtaaagcag
     1441 cctgtaacgc ctttaccgat gcagtgctgg aaatcgcgcg taatccaatc cagcgtgcgt
     1501 aacggaggtt gccgatgatc aatgcactgg gattgctgga agtggacggc atggtcgccg
     1561 cgatagatgc agcggatgcc atgctcaaag cagctaacgt tcgtctgctc agtcacgaag
     1621 tgcttgaccc tggtcgctta acgctggtgg tggaaggcga tctggcggcg ggtcgtgcgg
     1681 cgctggacgc aggttgtgct gccgcgatgc gtaccgggcg tgtcatcagc cgcaaggaga
     1741 tcggtcggcc agacgatgac acccagtggc tggttactgg ctttaaccgc cagccgaagc
     1801 aacccgtaag ggaacccgac gcgccagtta tcgtcgcgga atctgctgac gagttgttgg
     1861 cgctgttaac atcagtacgt cagggaatga cggcaggaga agtggctgcc cactttggct
     1921 ggccgctgga aaaagccaga aatgcgctcg aacagctctt ttctgccggg acgttacgta
     1981 aacgcagtag tcgttatcgt ctcaagcccc attaacctgt cggaggtgct gggtgtccta
     2041 caacacccgg cattaacatc atgaaaaaga cccgtacagc caatttgcac catctttatc
     2101 atgaaccctt acccgaaaac ctgaagctca cgccgaaggt cgaagtggat aatgttcatc
     2161 aacgacagac aacggatgtc tatgaacatg ctttaacgat taccgcctgg cagcagattt
     2221 acgatcagct gcatccgggc aagtttcatg gtgaatttac ggaaattcta ctcgatgata
     2281 ttcaggtttt tcgtgaatac accggtctgg cgctgcgtca gtcgtgcctg gtctggccga
     2341 actcgttctg gtttggcatt ccggcgacgc gcggtgagca gggatttatc ggttcgcaat
     2401 gtctgggaag cgcggaaatc gccacccgcc ctggtggcac tgaatttgaa ctgagcacgc
     2461 cggatgatta cacgatcctg ggcgtggtgc tttctgaaga tgtcatcacc cggcaggcta
     2521 actttttgca taacccggat cgggtattac atatgctgcg tagccagtcg gcgctggaag
     2581 tgaaagagca gcataaagcc gcgctgtggg gctttgtcca acaggcgctg gcgacgtttt
     2641 gcgagaaccc ggaaaatctc catcagcctg cagtgcgaaa agtgctgggg gataatttgc
     2701 taatggcgat gggggcgatg ctggaagacg cgtaaccaat ggtgacggcg gaaagcatca
     2761 gtcatcagag ttaccgtaga ttactttccc gcgcccgtga atatgtgctg gaaaatatgt
     2821 ctgagccggt gacggtgctg gacttgtgta atcaactgca tgtcagtcgc cgcacgctac
     2881 aaaacgcgtt tcacgctatt ttaggcattg gcccaaacgc gtggctgaaa cgcattcgcc
     2941 tgaacgccgt acgccgcgaa ctgataagcc cgtggtcgca aagcacaacg gtaaaagacg
     3001 ccgccatgca gtggggattc tggcatctgg ggcaatttgt cacggattac cagcagctgt
     3061 ttgccgagaa gccgtcgttg acgttgcatc agcggatgcg ggaatggggg ggagggagtt
     3121 acacccaatc cctgacctta ataaactcac ttaacgccgc ttctgggctg ccatcttttg
     3181 gctgataatc atactcccag cgtaccagtg gcggcattga catcaggatc gactcggtgc
     3241 gcccgccagt ttgcaggcca aacagagtgc cgcgatccca gaccagattg aactcgacat
     3301 aacgaccgcg acggtagagc tgaaaattgc gctcgcgctc gccgtaggcc attgctttac
     3361 gtcgctctac aattggtaaa taagcgtcgg tgtagccttt gcctaccgcc tgcataaagg
     3421 caaaacagtg gtcgaaatct ggcgtgttca gatcatcaaa gaacagcccg ccaataccgc
     3481 gctgttcgtt gcgatgtttg aggtagaagt aatcgtcgca ccactttttg taacggggat
     3541 aaacgtcttc accaaatggc aggcacaggt cacgggcggt gcggtgccag tgaatggcgt
     3601 cttcttcaaa accatagaaa ggggttaaat cgaagccgcc gccaaaccac cagacgggct
     3661 ctgcacccgg tttttcggca ataaaaaaac gcacattcgc gtggctggtg ggaacatacg
     3721 ggttatgcgg atgcactacc agtgaaacgc ccatcgcctc gaaactgcgc ccggcaagtt
     3781 ccgggcgatg agcggtggcg gaagcaggca tcgcctcgcc gtggacgtga gaaaagttga
     3841 cgcctgcctg ttcgaaaaca ccaccattac gcaacacccg actacgcccg ccgccgccag
     3901 cttcgcgctg ccaactatct tcgacaaatt ctgcgccatc gacggcggtc agctgctgac
     3961 aaatcgtatc ctgaaggttg agcagaaact gtttaacctg gtgtgcgtcg ggtttcataa
     4021 cttatcgctt tttcgaatgt gctttctggt tgtcgaacca gtggaaataa ctgatcacgc
     4081 cttcagcaat cgctgtggcg attttctgac gaaacgccgc cgtgcctaac agccgctctt
     4141 cttccgggtt ggtgataaac gaggtttcca ccagcaccga aggaaccgac ggcgatttca
     4201 acaccacaaa cgcggcttgt tcggtgttgc ggctgtgcag tttatgcacc ggcttaatct
     4261 ttttcagaat atgcgagcca agcgtcaggc tgtttttaat agtatcggtt tgcaccagat
     4321 caaacagcac ttgctgcaat aggtgatcct tgtcagtcgc ctttttaccg gcaacttcat
     4381 cggcgcggtt ttcgcgttca gacaggtatt tcgccattgc gctacttgcc ccacggttag
     4441 agagggcaaa taccgaagca ccggcagctt tcgggttggt aaagccatcg gcatgaattg
     4501 acataaacag atctgcgcca tgtttatggg cgatttcaac gcgatcgtaa agtgggataa
     4561 acgtatcgcc agaacgcgtt aaacgcgcat caatcccatg attacgcaaa atggaacgga
     4621 cgtttttagc aatcgccagc accacatgtt tttctttcga accgttgcgt ccgatcgctc
     4681 cggtatcaat tccgccgtgg cctggatcga gaacaacgac acgtttgccg ccagattttt
     4741 tggctttcgg cttgctgtgt ccgttgctgg tttttaaagg ttcgtctttg gcgatggctt
     4801 gcgacattcc tgacaacgtc agggcagcca aaccggcttt cagcacctgg cggcgcgaag
     4861 tgagtgtttt tagtggttta aaagtgctca tacggcctga gttgtaataa taaagttcca
     4921 gatgttatat cgtatcgcgt aatccgttac gacggtttga tgttgagaat tgttttactt
     4981 ttcatttcaa tagttgacaa ctccccatta tgccactttt tcaaccgatt ttcgtcagat
     5041 attggctaat tctaccgttc acgccataat cagcctttta acccgcaaaa aggtaacgaa
     5101 taccatggag atacgcgtat ttcgccagga agatttcgaa gaggtcatca ccctttggga
     5161 gcgttgcgac ttgctgcgtc cgtggaacga tccggaaatg gacatcgagc gtaagatgaa
     5221 ccatgacgtc agtttgtttt tggtcgctga ggtgaacggt gaagtggtcg gaacggtgat
     5281 gggcggttat gacgggcatc gcgggtctgc ttattatctt ggcgtgcatc cagagtttcg
     5341 tgggcgtggg attgccaatg cgttgcttaa tcggctggag aaaaagctga ttgctcgtgg
     5401 ctgcccgaaa attcagatca atgtgccgga agataacgac atggtgctcg gaatgtatga
     5461 acgcctggga tatgaacacg ccgacatgct gagtctgggt aagcgtttga ttgaagatga
     5521 agagtactga gttccatcct gtccattatg atgcgcacgg acgcctgcgt ttacccttgc
     5581 tcttctggct tgtgctattg cttcaggcgc gaacctgggt gctgtttatc attgccggtg
     5641 cgtcgcgcga gcagggtact gcgctgctaa atctgtttta tcccgatcac gataatttct
     5701 ggctggggtt gattcccggt attccggcgg tgctggcgtt tttgttgagc ggtcggcggg
     5761 cttcgtttcc tcgcacctgg catgtgctct attttctgtt gctgttggcg caggtggttt
     5821 tactttgctg gcaaccgtgg ctgtggctga acggtgaatc cgttagcggt atcggtctgg
     5881 cgctggtagt ggcggatatt gtggcgttaa tctggctgct gaccaatcga cgtttacgcg
     5941 cttgttttaa tgaagaaaaa gaataacgca gaggtgcgct ttgtttatgc cggatgcggc
     6001 gtgaacgcct tatccggcct acaaaacatc gaaaattcaa tatattgcag gagaaagtag
     6061 gcctgataag cgtagcgcat caggcaattt tgtgtttgtc atcaaccttt aacggcactt
     6121 tttggtgaat ttgcactcca agcaacgtta ttgaataacc aaaggaagtg acatgaaatc
     6181 gctgcgttta atgttatgcg ctatgccgtt gatgctgacc ggctgttcca cgatgtcgtc
     6241 agttaactgg tcggctgcta acccgtggaa ctggtttgga tcgtccacca aagtgagcga
     6301 gcagggtgtg ggtgaattaa cggcgtccac accactgcaa gaacaagcca ttgctgatgc
     6361 gcttgatggc gattatcgcc tgcgcagcgg aatgaaaacc gcgaacggca acgtggtgcg
     6421 cttttttgaa gtgatgaaag gcgacaacgt ggcgatggtg attaacggcg atcaaggcac
     6481 gatcagtcgc attgacgtgc tggatagcga tattcctgct gacaccggtg ttaaaatcgg
     6541 tacaccgttt agcgaccttt acagcaaagc atttggcaat tgccaaaaag ctgatggtga
     6601 tgataatcgt gccgtcgaat gtaaagccga aggcagtcaa catattagct accagttcag
     6661 aggggaatgg cgtggtcctg aagggttaat gccttcggac gataccctga aaaactggaa
     6721 agtcagtaaa attatctggc ggcgttaatt tgcgtctgaa caaaccgccg ccgcgaaaaa
     6781 acacgtaaaa tagcgctcaa caatgccacg gattgcgtgg cattcttatt ttcaggagga
     6841 acaatgtctc aggttcagag tggcattttg ccagaacatt gccgcgcggc gatttggatc
     6901 gaagccaacg tgaaagggga agttgacgcc ctgcgtgcgg ccagtaaaac atttgccgac
     6961 aaactggcaa cttttgaagc gaaattcccg gacgcgcatc ttggtgcggt ggttgccttt
     7021 ggtaacaaca cctggcgcgc tctgagcggc ggcgttgggg cagaagagct gaaagatttt
     7081 ccgggctacg gtaaaggcct tgcgccgacg acccagttcg atgtgttgat ccacattctt
     7141 tctctgcgtc acgacgtaaa cttctctgtc gctcaggcgg cgatggaagc ctttggtgac
     7201 tgcattgaag tgaaagaaga gatccacggc ttccgttggg tggaagagcg tgacctgagc
     7261 ggctttgttg acggtacaga aaacccggcg ggtgaagaga cgcgccgcga agtggcggtt
     7321 atcaaagacg gcgtggatgc cggcggcagc tatgtgtttg tgcagcgttg ggagcacaac
     7381 ctgaagcagc tcaaccggat gagcgttcac gatcaggaga tgatgatcgg gcgcaccaaa
     7441 gaggccaacg aagagattga cggcgacgaa cgtccggaaa cctctcacct cacccgcgtt
     7501 gatctgaaag aagatggcaa agggctgaag attgttcgcc agagcctgcc gtacggcacc
     7561 gccagtggca ctcacggtct gtacttctgc gcctactgcg cgcgtctgca taacattgag
     7621 cagcaactgc tgagcatgtt tggcgatacc gatggtaagc gtgatgcgat gttgcgcttc
     7681 accaaaccgg taaccggcgg ctattacttc gcgccgtcgc tggacaagct gatggcgctg
     7741 taagcgtttc tgattctatg attaaaggcc agccagtaac aaaactgact ggccttttta
     7801 ttacttttgc ttcaacgccg catacacctg atcaactacc caaccataag ttgcaatcgg
     7861 taactgaccg ctttcgaaca tattgggatt tttttgtgga tcggcaactg gcgaatgggg
     7921 cttgttgctt aacatcacaa tcgccatatg attgaccgga tcgataacgg ttactgtccc
     7981 ggtccagcca gtgtgaccgt aggtttgcgg gcttgccagc gtgccaaacg tcggcgtcat
     8041 ggtggcatta ccattcacgc gccagccgag gccaaaagtg gcatcttcct tagagctggt
     8101 ggtgaacatc ttcaccgttt ccgcactgaa cagctgcaca tcgccatagc ccccgccgtt
     8161 cagcatcgtt tgcattaaca ccgcaatatc gccggtattg gaaaacaaac ctgcgtgccc
     8221 ggaaacgccg cccatcgaat aaaaggcttt ttcatcgtgc acctgacccc agagagtgga
     8281 ggtgcggata ttcgggaaat ggatcacgcc atcgcgggta ttgccgttca attccgtggc
     8341 ggcaatttgt tgcggtttaa agcctttcag cagcgggtta aataccgtat gtgtcaggcc
     8401 gagcgggcga taaatcgact cttcaacata gcggtcaagc ggctgaccgg taaccgactc
     8461 gacgataaat ccaagcagca tataatcgac atcgctgtag atatgtttgc tgccgggctg
     8521 atattccagc ggcgtgcgct tgatcatctc cagcgtctgg cctttatcct aggaatataa
     8581 cgcgcccgcg accgctttat tcgggtattg cggatctgcc gggaaaccgc cgctgtgatg
     8641 cagcaggtca gaaatccgca gggtgttttt gcctttaatg gtgtcatttg gactatcggc
     8701 aaaccccgga atatatttcg caatccgatc gtcaggatgc agtttgcctt cgctcatcag
     8761 cttttgcagg gcgaagttcg tggcgtacat tttggtgttt gaggccaggt catacagcgt
     8821 cccggtggtg gctttgacag gctgttccat caacacgctg ccatcgtact ttttcgccgc
     8881 tccccaggct ttgcgataca caatctgatt atctttaatg atcagcaggt ttacgccggg
     8941 ataaccggca tcaacttgct ggctaatcca gcgatccatc tggttaagcc gtttgacgtt
     9001 aaaccctgct ttctctggcg agctttctgt cagaacaggg tattttgcgg cgctgacgct
     9061 acaactaaca gccagcagag aaagatagag cattgtccgt ttcatgatat cagtccagat
     9121 tgacgttacg gcagccaaag agcgtggtga aaataaaccc gcaaacccat gccaccagaa
     9181 tcccgccagc ataaaccgcc atggccggaa ggatgccttg tgcggaagtc atcagcggca
     9241 gcgctaccag accagacggc ccaaaggcgc tgtttaagcc catcggcaga ccccaccagg
     9301 ctatcaggcc gataaacaaa ccgcccgccg caccgcctaa acaggcggtg acaaacggct
     9361 tcatgcgggg cagggtgaca ccgtaaatca gcggttcacc aacgcccagc aggccgggaa
     9421 taatcgcccc gcgtacctga ctgcgtagcg cactgtgcgg ttgcgaccgc cagtagagtg
     9481 ccagcgccgc gcccacctgg cccgcgcctg ccattgaaag gatgggaaat aagctgttga
     9541 atccctggct gtccattaac gcgaggtaaa caggaataaa gccctgatgc acgccaaata
     9601 ccacggcgat caggaacagc ccggctaaaa ccgcacaacc gaacggatta ctgttcaggt
     9661 gcataaacag ccatgacata ccttcgaata accagccacc cagcggcata atgatcaggt
     9721 acgcaagcgt agcggtgatc agcagggtga ttaacgaggt cagcagcatg tcgagatcgt
     9781 ccggcataaa gcggcgcacc atgccttcaa tgcgggcgca ggcccacgcg gcaatcagca
     9841 cgccgataat attgccgcgc ggatcgatgg gcagaccaaa gaaatcgtga aaaccggcgt
     9901 agtaaccggt ggttgcagcg gggttataac cgagcaaaaa gagtgcggca ataattgcgc
     9961 cattgacgcc cgtgccgcca aatgcctggg cggcgttata gcccaccaga atcaccagga
    10021 aggtgaacaa acctttgctg aacaccttca taaaattcag cgcgtcgggt agcgtgccct
    10081 gagcatctgc cggaacgtgc atcaccgtgg caattaacgt cgctatcccc agcagcagac
    10141 cggcggcaat aaaaccgggg atcagcggcg tgaagatggt ggcgaatttg gcgagaaatt
    10201 gttgcacgcc ggaggtttgt ttggctttta actgacgttt gttctgggcg gcgatttctg
    10261 cggcatcctg taccggtgcc tcgcccagca gctcgctcat cgcttttgcg gcacgatgcg
    10321 ctttaccagg tccaaaaacg acctgcacct ggtcgctggt caaaatgacg ctcttcacgc
    10381 cttccagcgt tttgatattg ggatcaacca gtgaactgtc atgtacaccc agacgcaggc
    10441 gcgtcataca gttaccacaa ctggcgatat ttcccggtcc gccgacacgg gtaagaatgg
    10501 tgttcagaag ttcactgctg atctctttgg ccatgggtta ttccttgtct aaaacctgac
    10561 gaataaagcc gccgtgttga tccaggcgtt ttttagcttc tgcggcatcg agatttttca
    10621 gcaccatcac aatggccgtt ttacagttgc gctcgcaggc aattaacgcc gcttccgctt
    10681 gttcggcatt acatccggtg gcgtttttaa cgatattgac ctggcgcaca tgcagttttt
    10741 cgttggtggc gaccacatcg accataaggt tgccgaacac tttgccggat ttaatcatca
    10801 gcccggtgga aagcatattg agcaccagtt tctgcgctgt acctgctttc atccgcgaag
    10861 aaccggtaac aacttcggca cctacaatcg gtgtaatggc aaactcagcg gtggttgaaa
    10921 cggcgctccc cggattacag gaaattccca ctgtgcggca gccgagctgg cgtgcgtatt
    10981 ccagtccggc aatcacatac ggcgtgcgac cgctggcagc aatgccaacc accacatcct
    11041 gtgccgttaa attaatattt ttcagatcat taacaccgcc ttcccggcta tcttccgcgc
    11101 cttccaccgc gtgctgaatg gcatattcgc cgccagcaat caaaccaacc accagacccg
    11161 gtttcacgcc gtaggtgggc ggacattcgc tggcatccag aatccccaga cgaccggatg
    11221 ttcccgcacc gaggtaaatc agacgcccgc cgccgcttac ctgggcgtgg ataacatcga
    11281 tcgccgcggc gatatccggc agtacgcgct caacggcaag cggtacggtt ttatcttcat
    11341 cgttgataat ccggcacatt tccagcgttg atacgcggtc aatttcagcc gaggcggcgt
    11401 tcgagccttc agtaatcatc ttttcaagtt gcatcggtgg tgaccttact atttacgatc
    11461 aaataattgc agatgtatgg aatcatatat cctgaattga cagacttaaa ggaatcattg
    11521 agtctacact cgcagagtgt gaagagcgtc ataagaactt aagcggaatt tatgctgcca
    11581 gcccaggaga gtggaagatg ttgtacctga cgaaaataag caatgcgggg agtgaattca
    11641 ccgaaaacga gcaaaaaatc gctgactttc tgcaggccaa cgtgagtgag ctgcaatccg
    11701 tttcttcacg gcagatggcg aaacagctcg gcattagcca gtcgagcata gtgaaatttg
    11761 cccaaaaact cggcgcgcaa ggatttactg aattgcgtat ggcgttaata ggcgaataca
    11821 gtgctagccg ggagaaaacg aataccacgg cgctgcacct gcacagttcg attaccagtg
    11881 atgattcgct ggaagtgatt gcccgcaaat tgaatcgcga aaaagagctg gcgctggagc
    11941 aaacctgtgc gttgttcgac tacgcgcggc tgcaaaaaat cattgaggtc atcagtaaag
    12001 caccgtttat ccagataacg ggcctgggcg gatcggcgct ggtggggcgc gatctgtcgt
    12061 tcaaactgat gaaaattggc tatcgcgtgg cctgcgaagc cgacacgcac gtacaagcca
    12121 ccgtttccca ggcgttgaaa aaaggcgatg tacaaatcgc tatctcttac agcggtagta
    12181 aaaaagagat tgtcttgtgc gtagaagcgg cacgaaagca gggggcaacg gtgattgcca
    12241 ttacttctct ggctgactct ccgctgcggc ggctggcgca tttcacgctc gataccgttt
    12301 ccggtgaaac cgaatggcgt agctcgtcga tgtctacccg cacggcgcaa aattctgtta
    12361 ccgatttact gtttgttggt cttgtgcaac tcaatgatgt ggcgtcattg aaaatgattc
    12421 agcgcagcag tgagctaaca caacgcctga aatgatgcat aaagcagcga ctggattgag
    12481 attttcctga attagtgagc tgatccgcag caatattttg tttatcctgt attttcagag
    12541 ggaatggagt gtaacgctct gtattaacaa ggagagcatt aaaatgggta aactcacggg
    12601 caagacagca ctgattacgg gcgcattgca gggaattggc gaaggaattg ccagaacttt
    12661 tgcacgtcat ggcgcgaacc taatcttgct ggatatctcc cctgagatcg aaaagctggc
    12721 ggacgaactg tgtggtcgtg gtcatcgctg tacggcggtt gtcgccgatg tgcgtgaccc
    12781 ggcgtcggta gccgcagcta tcaaacgcgc gaaggaaaaa gaagggcgca ttgatatcct
    12841 ggtgaataac gcaggcgttt gtcgtctggg cagtttcctc gatatgagcg atgacgatcg
    12901 cgatttccat attgatatca atattaaagg cgtatggaac gtcacgaagg cggtgctgcc
    12961 ggagatgatt gcgcgcaaag atggtcgcat tgtgatgatg tcttcagtca ctggtgatat
    13021 ggtggccgat cctggcgaaa cggcgtacgc cttaacgaaa gcggcgattg ttggcctgac
    13081 aaaatcgctg gcggtggagt acgcgcagtc tggtattcgc gttaacgcca tttgcccggg
    13141 atacgtgcgc acaccaatgg cggaaagcat tgcccgccag tcgaacccgg aagatccaga
    13201 gtcggtgctg actgaaatgg cgaaagcaat cccgatgcgt cgcctcgccg atccgctgga
    13261 agtcggcgaa ctggcggcct tcctcgcatc ggatgaatcc agctatttaa ccggtacaca
    13321 gaatgtgatt gatggcggca gcacactgcc ggagacggtt agcgtcggta tctgattcac
    13381 ctctgtttcc tccctgcatg tgtggggagg atttcgtctt gaactaagtt caccaggcta
    13441 ttttatttgt cattttggcc ccgggcagtg ctcgaaatac tcacgtacta tgtgtacgct
    13501 ccggtttctc cgcgctgtcc gtgtccaaac tgcctgcaac aattacgcct gttgaaccaa
    13561 gttcttattc cctttttaac ttccaaatca ccaaacggta tataaaaccg ttactccttt
    13621 cacgtccgtt ataaatatga tggctattag aaagtcatta aatttataag ggtgcgcaat
    13681 ggccgttaac ttactgaaaa agaactcact cgcgctggtc gcttctctgc tgctggcggg
    13741 ccatgtacag gcaacggaac tgctgaacag ttcttatgac gtctcccgcg agctgtttgc
    13801 cgccctgaat ccgccgtttg aacagcaatg ggcaaaagat aacggcggcg acaaactgac
    13861 gataaaacaa tctcatgccg ggtcatcaaa acaggcgctg gcaattttgc agggcttaaa
    13921 aaccgacgtt gtcacttata accaggtgac cgacgtacaa attctgcacg acaaaggcaa
    13981 gctgatcccg gctgactggc agtcgcgcct gccgaataat agctcgccgt tctactccac
    14041 catgggcttc ctggtgcgta agggcaaccc gaagaatatc cacgactgga acgacctggt
    14101 gcgctccgac gtgaagctga ttttcccgaa cccgaaaacg tcgggtaacg cgcgttatac
    14161 ctatctggcg gcatggggcg cagcggataa agctgacggt ggcgacaaag ccaaaaccga
    14221 acagtttatg acccagttcc tgaaaaacgt tgaagtgttc gatactggcg gtcgtggcgc
    14281 gaccaccact tttgccgagc gcggcctggg cgatgtactg atcagcttcg agtcggaagt
    14341 gaacaacatc cgtaaacagt atgaagcgca aggctttgaa gtggtgattc cgaaaaccaa
    14401 cattctggcg gaattcccgg tggcgtgggt cgataaaaac gtgcaggcca acggtacgga
    14461 aaaagcagca aaagcctacc tgaactggct ctacagcccg caggcgcaga ccatcatcac
    14521 cgactattac taccgcgtaa ataacccgga agtcatggac aaactgaaag ataaattccc
    14581 gcagaccgag ctgttccgcg tggaagacaa atttggctcc tggccggaag tgatgaaaac
    14641 ccacttcacc agcggcggcg agttagacaa gctgttagcg gcggggcgta actgatgttt
    14701 gcagtttcat caagacgcgt gctgccgggc tttaccttaa gcctcggcac cagtctgctg
    14761 tttgtgtgcc tgattttgct gctgccgctc tccgcgctgg tgatgcagct ggctcagatg
    14821 agctgggcgc agtactggga ggtgatcacc aacccacaag tggtcgcggc ctacaaagtg
    14881 acgctgctgt cggcgtttgt ggcatcgatt tttaacggcg ttttcggtct gctgatggcg
    14941 tggattttaa cacgttatcg ctttccgggc cgcacgctgc ttgatgcgct gatggattta
    15001 ccctttgcgc tgccaacggc agtcgccggt ttaacgctgg cctcgctctt ttccgtaaac
    15061 ggtttttacg gtgaatggct ggcgaagttt gatatcaaag tcacctatac ctggcttggt
    15121 attgcggtgg cgatggcctt taccagcatt ccgtttgtgg tgcgtaccgt gcagccggtg
    15181 ctggaagagt taggcccaga atatgaagaa gcggcggaaa cgcttggtgc aacgcgctgg
    15241 cagagtttct gcaaagtggt gctgccggaa ctttctccag cgctggtggc gggcgtggcg
    15301 ttgtcgttta cccgtagtct tggtgagttt ggcgcggtga tatttatcgc cgggaacatc
    15361 gcttggaaga cggaagtgac gtcgctgatg atttttgtgc gcttgcagga gtttgattac
    15421 ccggcggcga gcgcgattgc ttcggtgatc ctcgcggcat ccctgctgct gctgttctca
    15481 attaacactc tgcaaagtcg ctttggtcgg cgtgtggtag gtcattaatg gcggaagtta
    15541 cccaattgaa gcgttatgac gcgcgcccga ttaactgggg caaatggttt ctgattggca
    15601 tcgggatgct ggtatcggcg ttcatcctgc tggtgccgat gatttatatc ttcgtacagg
    15661 cgttcagcaa agggctgatg ccggttttac agaatctggc cgatccggac atgctgcacg
    15721 ccatttggct gacggtgatg attgcgctga ttgccgtacc ggtgaacctg gtgttcggca
    15781 ttctgctggc gtggctggta acgcgcttta acttccccgg acgccagtta ctgctgacgc
    15841 tactggacat tccgtttgcc gtatcgccgg tagttgccgg tctggtgtat ctgctgttct
    15901 acggctctaa cggtccgctg ggcggctggc tggatgaaca taatttgcag attatgttct
    15961 cctggccggg aatggtgctg gtcaccatct ttgtgacctg tccttttgtg gtgcgcgagc
    16021 tggtgccggt gatgttaagc cagggcagcc aggaagacga agcggcgatt ttgcttggcg
    16081 cgtctggctg gcagatgttc cgtcgcgtca cattgccgaa cattcgctgg gcgctgctgt
    16141 atggtgtggt gctaaccaac gcccgcgcga ttggcgagtt tggtgcggtg tcggtggttt
    16201 ccggctcgat tcgcggcgaa acactttcgc tgccgttaca gattgaattg ctggagcagg
    16261 actacaacac cgtcggctcc tttaccgccg ccgcgctgtt gacgctgatg gcgattatca
    16321 ccctgttttt aaagagtatg ttgcagtggc gtctggagaa tcaggaaaaa cgcgcgcagc
    16381 aggaggagca tcatgagcat tgagattgcc aatattaaga agtcgtttgg tcgcacccag
    16441 gtgctgaacg atatctcact ggatattcct tctggtcaga tggtcgcgct gctggggccg
    16501 tccggttccg gaaaaaccac gctgctgcgc attattgccg ggctggagca tcaaaccagc
    16561 gggcatattc gcttccacgg taccgacgtg agccgcctgc acgcacgcga tcgtaaagtc
    16621 ggtttcgtgt tccagcatta cgcgctgttc cgtcatatga cggtgttcga caatatcgct
    16681 tttggcctga cggtgctgcc acgtcgcgag cgcccgaatg ccgcagccat caaagcgaaa
    16741 gtgacaaaat tgctggagat ggtccagctt gcgcatctgg cggatcgtta tccggcacag
    16801 ctttccggcg gccagaaaca gcgcgtggcg ctggcgcgcg cgctggctgt tgaaccgcaa
    16861 attctcctgc ttgatgaacc gtttggcgcg ctggatgcgc aggtgcgtaa agagctgcgt
    16921 cgctggctgc gtcaactgca tgaagagctg aaattcacca gcgtgttcgt gacccacgac
    16981 caggaagaag cgaccgaagt agctgatcgt gtagtggtga tgagccaggg caatatcgag
    17041 caggctgatg cgccggacca ggtatggcgc gaaccagcga cccgatttgt gctcgaattt
    17101 atgggcgaag tgaaccgcct gcagggaacc attcgcggcg ggcagttcca tgttggcgca
    17161 catcgctggc cgctggggta tacgcctgcg tatcaggggc cggtggatct cttcctgcgc
    17221 ccgtgggaag tggatatcag ccgccgtacc agtctcgatt cgccgctgcc ggtacaggta
    17281 ctggaagcca gcccgaaagg tcactacacc caattagtgg tgcagccgct ggggtggtac
    17341 aacgaaccgc tgacggtcgt gatgcatggc gacgatgccc cgcagcgtgg cgagcgttta
    17401 ttcgttggtc tgcaacatgc gcggctgtat aacggcgacg agcgtatcga aacccgagat
    17461 gaggaacttg ctctcgcaca aagcgcctga taggttgagt gaatgttaaa cgcccggagg
    17521 cgcttcccgc gatccgggct ttttaatggc aaggtttgta acctgtagac ctgataagac
    17581 gcgcaagcgt cgcatcaggc aacaccacgt atggatagag atcgtgagta cattagaaca
    17641 aacaataggc aatacgcctc tggtaaagtt gcagcgaatg gggccgaata acggcagtga
    17701 agtctggttg aaactggaag gcaataaccc ggcaggttcg gtgaaagatc gtgcggcact
    17761 ttcgatgatc gtcgaggcgg aaaagcgcgg ggaaattaaa ccgggtgatg tgttaatcga
    17821 agccaccagt ggtaacaccg gcattgcgct ggcaatgatt gccgcgctta aaggctatcg
    17881 catgaaattg ctgatgcccg acaacatgag ccaggaacgc cgtgcggcga tgcgtgctta
    17941 tggtgcggaa ctgattcttg tcaccaaaga gcagggcatg gaaggtgcgc gcgatctggc
    18001 gctggagatg gcgaatcgtg gcgaaggaaa gctgctcgat cagttcaata atcccgataa
    18061 cccttacgcc cattacacca ctaccgggcc ggaaatctgg cagcaaaccg gcgggcgcat
    18121 tacccatttt gtctccagca tgggaacaac cggcactatc accggcgttt cacgctttat
    18181 gcgcgaacaa tccaaaccgg tgaccattgt cggcctgcag ccggaagaag gcagcagtat
    18241 tcccggcatt cgccgctggc ctgcggaata tctgccgggg attttcaacg cttctctggt
    18301 ggatgaggtg ctggatattc atcagcgcga tgcggaaaac accatgcgcg aactggcggt
    18361 gcgggaagga atattctgtg gcgtcagctc aggcggcgcg gttgctggag cactgcgggt
    18421 ggcaaaagct aaccctggtg cggtggtggt agcgatcatc tgcgatcgtg gcgatcgcta
    18481 cctctccacc ggagtgtttg gggaagagca ttttagccag ggggcgggga tttaagatta
    18541 ttgcgcaggc accgttttat ccgtctgcgc aattagcgca tgtaaaaaag gctgtgcgtt
    18601 ctcatcgctc ttaccgggga tcttcacaat atacggcttc ccggtaatcg atgacgacga
    18661 agcaacctta tcaataaact gctcggcagt gtcaatgcgg ttacgggtat tgccgagctt
    18721 cagacgcaga tgagaaaccg cttcatcgca ggtatgttca tcaccgttgc gcacaaatat
    18781 caaatccttt ttctgtgata atccctccag catggcgttg atgcgggctt cttcatgggc
    18841 agttaacttc gcgtaagcgg ggagtgtcat tagtagtgta atgaccagac aaatgatttt
    18901 cttcattgaa ttaccttatc cttgttttgt aatagccgat ttgactgcca gaatcaggta
    18961 aagtttcggt tggaatacga tgaggatcat cggcaaggag aaaaaattaa atgagtagtt
    19021 tgttgttgtt taacgataag agcagggcgc tgcaggcgga tatcgtcgcc gtgcagtcgc
    19081 aggtggttta cggcagcgtg ggcaacagca ttgccgtgcc tgctatcaaa cagaacggtc
    19141 tgaatgtttt tgccgtgccg acggtattgc tgagcaatac gccgcattat gacactttct
    19201 acggtggtgc gattccggat gaatggttta gcggttattt gcgtgcgctt caggagcgtg
    19261 atgcgctgcg ccagctgcgc gctgtaacca cgggctatat gggaacggca tcgcaaatca
    19321 aaatccttgc cgagtggctg actgcgctac gcaaagacca tcctgaccta ttgatcatgg
    19381 tcgatccggt gattggcgat attgatagcg gaatttatgt caaacctgac cttcccgagg
    19441 cgtatcgaca atatttactg ccgctggcgc agggaattac ccccaatatc tttgagctgg
    19501 aaatcctgac cggtaaaaat tgccgcgatc tcgacagtgc cattgctgcc gcaaaaagtc
    19561 tgctttcaga cacattaaaa tgggtggtga ttaccagcgc ctccggtaat gaagaaaatc
    19621 aggagatgca ggtggtggtg gtcagtgccg acagcgtgaa tgtcatttcc cattcacggg
    19681 taaaaaccga cctgaaaggg actggcgacc tgttttgtgc tcagcttatc agtggtttgc
    19741 tgaaagggaa ggcgttaaac gatgcggtgc accgtgcggg gttgcgcgta ctggaagtga
    19801 tgcgctacac ccagcagcat gagagcgatg aattgatttt gccgccgctg gcggaagcat
    19861 aaaaaatggc gccgatgg
//
LOCUS       DAJVSY010000072        19762 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.072, whole genome shotgun sequence.
ACCESSION   DAJVSY010000072 DAJVSY010000000
VERSION     DAJVSY010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19762)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19762)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19762
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.072"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            49..993
                     /gene="wecH"
                     /locus_tag="OQQ19_002270"
     CDS             49..993
                     /gene="wecH"
                     /locus_tag="OQQ19_002270"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000261200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetyltransferase WecH"
                     /protein_id="HCS1803877.1"
                     /translation="MVVMIHTTTWYVTNAHSVSPVTWDIANVLNSASRVSVPLFFMIS
                     GYLFFGERSAQPRHFLRIGLCLIFYSAIALLYIALFTSINMELALKNLLQKPVFYHLW
                     FFFAIAVIYLVSPLIQVKNVGGKMLLVLMAVIGIIANPNTVPQKIDGFEWLPINLYIN
                     GDTFYYILYGMLGRAIGMMDTQHKALSWVSAALFATGVFIISRGTLYELQWRGNFADT
                     WYLYCGPMVFICAIALLTLVKNTLDTRTIRGLGLISRHSLGIYGFHALIIHALRTRGI
                     ELKNWPILDIIWIFCATLAASLLLSMLVQRIDRNRLVS"
     gene            complement(1035..1472)
                     /locus_tag="OQQ19_002271"
     CDS             complement(1035..1472)
                     /locus_tag="OQQ19_002271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312472.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiaB family inner membrane protein"
                     /protein_id="HCS1803878.1"
                     /translation="MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYY
                     FAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLS
                     EKGFYGLAFFLSLFGAVAVQKNIRDAGINPPKETQVTQEEYSE"
     gene            complement(1518..1859)
                     /locus_tag="OQQ19_002272"
     CDS             complement(1518..1859)
                     /locus_tag="OQQ19_002272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709350.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803879.1"
                     /translation="MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTAT
                     FGNYAYLRAEKLGQLDNFFTHICQLVALITIGLLFIGVLNAPINAYEMVIYPIAFFVC
                     LFGQMRLFRSV"
     gene            complement(2024..2215)
                     /locus_tag="OQQ19_002273"
     CDS             complement(2024..2215)
                     /locus_tag="OQQ19_002273"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803880.1"
                     /translation="MGPALGAARLAQIAANPEKSLIELLPQLPLEQSHLPDAQRYAAY
                     QPRRETFRRLYQQLLPLMA"
     gene            complement(2148..3467)
                     /gene="xylB"
                     /locus_tag="OQQ19_002274"
     CDS             complement(2148..3467)
                     /gene="xylB"
                     /locus_tag="OQQ19_002274"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005077809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HCS1803881.1"
                     /translation="MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQD
                     PEQWWQATDRAMKALGDQHSLQDVKALGIAGQMHGATLLDAQQRVLRPAILWNDGRCA
                     QECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRM
                     TGEFASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAK
                     AWGMATVPVVAGGGDNAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCH
                     ALPQRWHLMSVMLSAASCLDWVAKLTGLCNVPALIAAAQQADESAEPVWFLPYLSGER
                     TPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGG
                     GARSEYWRQMLADISGQQLDYRTGGCGASTGRSKAGADCGESREIAH"
     gene            complement(3584..4861)
                     /gene="xylA"
                     /locus_tag="OQQ19_002275"
     CDS             complement(3584..4861)
                     /gene="xylA"
                     /locus_tag="OQQ19_002275"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HCS1803882.1"
                     /translation="MQAYFDQLDRVRYEGSKSSNPLAFRHYNPDELVLGKRMEEHLRF
                     AACYWHTFCWNGADMFGVGAFNRPWQQPGEALALAKRKADVAFEFFHKLHVSFYCFHD
                     VDVSPEGASLKEYINNFAQMVDVLAAKQEESGVKLLWGTANCFTNPRYGAGAATNPDP
                     EVFSWAATQVVTAMEATHKLGGENYVLWGGREGYETLLNTDLRQEREQLGRFMQMVVE
                     HKHKIGFQGTLLIEPKPQEPTKHQYDYDAATVYGFLKQFGLEKEIKLNIEANHATLAG
                     HSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTG
                     GLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNS
                     ELGQQILKGQMSLADLAKYAQEHNLSPVHQSGR"
     gene            5227..6198
                     /gene="xylF"
                     /locus_tag="OQQ19_002276"
     CDS             5227..6198
                     /gene="xylF"
                     /locus_tag="OQQ19_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1803883.1"
                     /translation="MKIKNILLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDR
                     DIFVKKAESLGAKVFVQSANGNGETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA
                     KQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNN
                     AKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALTANNNKIDAVVASNDATAGG
                     AIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGN
                     GQEPKADTSLNNGLKDVPSRLLTPIDVNKNNIKDTVIKDGFHKESEL"
     gene            6276..7805
                     /gene="xylG"
                     /locus_tag="OQQ19_002277"
     CDS             6276..7805
                     /gene="xylG"
                     /locus_tag="OQQ19_002277"
                     /EC_number="7.5.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter ATP-binding protein"
                     /protein_id="HCS1803884.1"
                     /translation="MPYLLEMKNITKTFGSVKAIDNVSLRLNAGEIVSLCGENGSGKS
                     TLMKVLCGIYPHGSYEGEIIFAGEEIQASHIRDTERKGIAIIHQELALVKELTVLENI
                     FLGNEITHNGIMDYDLMTLRCQKLLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQ
                     VRLLILDEPTASLTEQETSVLLDIIRDLQQHGIACIYISHKLNEVKAISDTICVIRDG
                     QHIGTRDAAGMSEDDIITMMVGRELTALYPNEPHTTGDEILRIEHLTAWHPVNRHIKR
                     VNDVSFSLKRGEILGIAGLVGAGRTETIQCLFGVWPGQWEGKIYIDGKQVDIRNCQQA
                     IAQGIAMVPEDRKRDGIVPVMAVGKNITLAALNKFTGGISQLDDAAEQKCILESIQQL
                     KVKTSSPDLAIGRLSGGNQQKAILARCLRILILDEPTRGIDIGAKYEIYKLINQLVQQ
                     GIAVIVISSELPEVLGLSDRVLVMHEGKLKANLINHNLTQEQVMEAALRSEHHVEKQS
                     V"
     gene            7783..8964
                     /gene="xylH"
                     /locus_tag="OQQ19_002278"
     CDS             7783..8964
                     /gene="xylH"
                     /locus_tag="OQQ19_002278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose ABC transporter permease XylH"
                     /protein_id="HCS1803885.1"
                     /translation="MSKSNPSEVKLAVPTSGGFSGLKSLNLQVFVMIAAIIAIMLFFT
                     WTTDGAYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICD
                     VWLGWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGT
                     TVSPTSAAMSQIGQSYLPASTGFIIGALGLMAFVGWQWRGRMRRQALGLQSPASTAVV
                     GRQALTAIIVLGAIWLLNDYRGVPTPVLLLTLLLLGGMFMATRTAFGRRIYAIGGNLE
                     AARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGG
                     TSLAGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAVWMDSATKRR
                     S"
     gene            9042..10220
                     /gene="xylR"
                     /locus_tag="OQQ19_002279"
     CDS             9042..10220
                     /gene="xylR"
                     /locus_tag="OQQ19_002279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator XylR"
                     /protein_id="HCS1803886.1"
                     /translation="MFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEED
                     FRARIDKIKDWLGDGVIADFDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATD
                     NYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGL
                     ETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQVCEHLHIPVPEKLCVIGI
                     DNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLDKEEMPLQRILVPPVRVIERRS
                     TDYRSLTDPAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMI
                     HAEKLEKARSLLISTTLSINEISQMCGYPSLQYFYSVFKKAYDTTPKEYRDVNREVML
                     "
     gene            complement(10328..11152)
                     /locus_tag="OQQ19_002280"
     CDS             complement(10328..11152)
                     /locus_tag="OQQ19_002280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein bax"
                     /protein_id="HCS1803887.1"
                     /translation="MILTPIRRYGAMILMLLTLVFSSEVLAKTHTTTASQKSHLTKAS
                     NKQVSSKQEYSRNSAKSSSLPDLRKYPSGTPRKKAFLRTVMPYITSQNAAITAERNWL
                     ISKQYQGQWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLERVDIIPTSMVATMAAA
                     ESGWGTSKLARNNNNLFGMKCMKGRCTNAPGKVKGYSQFSSVKESVSAYVTNLNTHPA
                     YSSFRKSRAQLRKADQEVTATAMIHKLKGYSTKGKSYNNYLFAMYQDNQRLIAAHM"
     gene            11472..13502
                     /gene="malS"
                     /locus_tag="OQQ19_002281"
     CDS             11472..13502
                     /gene="malS"
                     /locus_tag="OQQ19_002281"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HCS1803888.1"
                     /translation="MKLASCFLTLLPGFAVAASWTSPGFPAFSEQGTGTFVSHAQLPK
                     GTRPLTLNFDQQCWQPADAIKLNQMLSLQPCSNTPPQWRLFRDGKYTLQIDTRSGTPT
                     LMISIQNAAEPVANLVRECPKWDGLPLTLDVSATFPEGAAVRDYYSQQIAIVKNGQIT
                     LQPAATSNGLLLLERAETDTSAPFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGMA
                     EIGTFHGGDLRGLINKLDYLQQLGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYY
                     TQDWTNLDANMGNEADLRTLVDSAHQRGIRILFDVVMNHTGYATLADMQEYQFGALYL
                     SGDEVKKTLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIRTDIGDYDNP
                     GFDDLTMSLAFLPDIKTESTTASGLPVFYKNKTDTHAKVIEGFTPRDYLTHWLSQWVR
                     DYGIDGFRVDTAKHVELPAWQQLKTEASSALREWKKTNPDKALDDKPFWMTGEAWGHG
                     VMQSDYYRHGFDAMINFDYQEQAAKAVDCLAQMDTTWQQMAEKLQGFNVLSYLSSHDT
                     RLFREGGDKAAELLLLAPGAVQIFYGDESSRPFGPTGSDPLQGTRSDMNWQDVSGKSA
                     ANVAHWQKISQFRARHPAIGAGKQTTLSLKQGYGFVREHGDDKVLVIWAGQQ"
     gene            13680..14933
                     /gene="avtA"
                     /locus_tag="OQQ19_002282"
     CDS             13680..14933
                     /gene="avtA"
                     /locus_tag="OQQ19_002282"
                     /EC_number="2.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--pyruvate transaminase"
                     /protein_id="HCS1803889.1"
                     /translation="MTFSLFGDKFTRHSGITLLMEDLNDGLRTPGAIMLGGGNPAQIP
                     EMQDYFQTLLTDMLESGKATDALCNYDGPQGKTELLTLLAGMLREKLGWDIEPQNIAL
                     TNGSQSAFFYLFNLFAGRRADGRVKKVLFPLAPEYIGYADAGLEEDLFVSARPNIELL
                     PEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELLKLDALANQHGIPLVID
                     NAYGVPFPGIIFSEARPLWNPNIVLCMSLSKLGLPGSRCGIIIANEKIITAITNMNGI
                     ISLAPGGIGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQETIAIIRRYLPENRCLIHK
                     PEGAIFLWLWFKDLPITTEQLYQRLKARGVLMVPGHNVFPGLDKPWPHTHQCMRMNYV
                     PEPEKIEAGVKILAEEIERAWAESH"
     gene            complement(15084..15557)
                     /locus_tag="OQQ19_002283"
     CDS             complement(15084..15557)
                     /locus_tag="OQQ19_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HCS1803890.1"
                     /translation="MNRFIIADATKCIGCRTCEVACAVSHQENQDCAALSPDEFISRI
                     RVIKDHSWTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFG
                     AMEVVSSRKKARAIKCDLCWHRETGPACVEACPTKALQCMDVEKVQRHRLRQQPV"
     gene            complement(15659..16507)
                     /gene="yiaJ"
                     /locus_tag="OQQ19_002284"
     CDS             complement(15659..16507)
                     /gene="yiaJ"
                     /locus_tag="OQQ19_002284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator YiaJ"
                     /protein_id="HCS1803891.1"
                     /translation="MGKEVMGKKENEMAQEKERPAGSQSLFRGLMLIEILSNYPNGCP
                     LAHLSELAGLNKSTVHRLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIH
                     IAAPHLEALNIATGETINFSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMG
                     KIYMAFGHPDYVKSYWENHQHEIQPLTRNTITELPAMFDELAHIRESGAAMDREENEL
                     GVSCIAVPVFDIHGRVPYAVSISLSTSRLKQVGEKNLLKPLRETAQAISNELGFTVRD
                     DLGAIT"
     gene            16708..17706
                     /gene="yiaK"
                     /locus_tag="OQQ19_002285"
     CDS             16708..17706
                     /gene="yiaK"
                     /locus_tag="OQQ19_002285"
                     /EC_number="1.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydro-L-gulonate 2-dehydrogenase"
                     /protein_id="HCS1803892.1"
                     /translation="MKVTFEQLKAAFNRALISRGVDSETADACAEMFARTTESGVYSH
                     GVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAA
                     DHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLI
                     VAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRI
                     LPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPT
                     RDAKLQRIMDYVTTAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL"
     gene            17718..18186
                     /locus_tag="OQQ19_002286"
                     /pseudo
     CDS             17718..18186
                     /locus_tag="OQQ19_002286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418033.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
     gene            18304..18777
                     /gene="yiaM"
                     /locus_tag="OQQ19_002287"
     CDS             18304..18777
                     /gene="yiaM"
                     /locus_tag="OQQ19_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diketo-L-gulonate TRAP transporter small
                     permease YiaM"
                     /protein_id="HCS1803893.1"
                     /translation="MKKILEVILAINLAVLSCIVFINIILRYGFQTSILSVDELSRYL
                     FVWLTFIGAIVAFMDNAHVQVTFLVEKLSPAWQRRVALVTHSLILFICGALAWGATLK
                     TIQDWSDYSPILGLPIGLMYAACLPTSLVIAFFELRHLYQLITRSNSLTSPPQGA"
     gene            18780..>19762
                     /locus_tag="OQQ19_002288"
     CDS             18780..>19762
                     /locus_tag="OQQ19_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HCS1803894.1"
                     /translation="MAVLIFLGCLLGGIAIGLPIAWALLLCGAALMFWLDMFDVQIMA
                     QTLVNGADSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVLAAM
                     IMASLSGSAVADTAAVAALLVPMMRSANYPVNRAAGLIASGGIIAPIIPPSIPFIIFG
                     VSSGLSISKLFMAGIAPDMMMGATLMLTWWWQASRLNLPRQQKATMQEIWHSFVSGIW
                     ALFLPVIIIGGFRSGLFTPTEAGAVAAFYALFVATVIYREMTFATLWHVLIGAAKTTS
                     VVMFLVASAQVSTWLITIAELPMMVSDLLQPLVDSPRLLFIVIMVAILIVG"
BASE COUNT         4986 a         4947 c         4803 g         5026 t
ORIGIN      
        1 cagcccaaaa tttactggat tgataacctg cgagggatag cgtgtttaat ggtggtgatg
       61 attcacacca ctacctggta tgtgaccaat gctcatagtg ttagccccgt cacatgggat
      121 atcgccaatg ttctgaattc tgcctctcgt gtcagcgtgc cgctattttt catgatttcc
      181 ggctatctct tttttggcga acgcagcgcc cagccgcgcc atttcttgcg tatcggctta
      241 tgtctgattt tttatagcgc aatcgcactg ctctacattg cgctgtttac ctccatcaat
      301 atggagttag cgctgaaaaa cctgctgcaa aagccagtgt tttaccactt gtggtttttc
      361 ttcgcgattg cggtgattta tctggtttca ccgctgattc aggtgaagaa cgtcggcgga
      421 aaaatgttgc tggtgctaat ggcggtgatt ggcattatcg ctaacccaaa cacagtgccg
      481 cagaaaattg acggttttga atggctgcca attaacttat atatcaatgg cgatactttt
      541 tactacattc tgtatggcat gttgggccgc gctataggga tgatggacac acagcataaa
      601 gcactgtcgt gggtgagcgc cgcgctgttt gcgacggggg tttttattat ctctcgcggg
      661 acattatatg aattgcagtg gcgcggaaat tttgccgata cctggtatct ttactgtggg
      721 ccgatggttt ttatctgcgc aatcgcgcta ttgactctgg ttaaaaacac gctggatacg
      781 cgtaccattc gcggacttgg cttaatctcc cgccattcat tgggtatata cggattccac
      841 gccttgatta tccatgcgct gcgcacccgg ggaattgagc ttaaaaattg gccaatactg
      901 gatattattt ggatcttttg cgcgacgttg gcagcgagtt tgttactttc tatgctggta
      961 caacgaatcg acagaaacag attagtgagt taagtaaaag cccgttcaca ttggactgac
     1021 cgggcttacg tgaattattc gctgtattct tcctgggtaa cctgtgtttc ttttggcggg
     1081 tttattccgg catcacgaat attcttctgc accgctactg caccaaacaa gcttaagaag
     1141 aaagccagtc cataaaaacc tttttcactg agtaataatg tcgcattcca cagacctacc
     1201 atcagtaatg caacagagat aataaagaca gtcaggcagg tcatataata aatggaagtg
     1261 gtcggtatgc cttcatactt gtcccgaacg gtcttttgat aagacgcagc agaaaacagt
     1321 cctaacacca gtacggcaaa ataataccct ttttcattta actgcatctc tgcattccat
     1381 agccctaaca gataggtaac gataccacca acgagagcta tccatgacac aatactaaag
     1441 gccggtgaat aggttgatat tttgttgtcc atcacagtat tcctttcatt cctgaatgtg
     1501 taagagcttt atgttgctca taccgagcga aacaaacgca tttgaccaaa caagcagaca
     1561 aaaaaggcga tggggtagat caccatttca taagcattga taggtgcatt taaaacaccg
     1621 ataaacaaga gaccgatagt gattaacgca actaactggc agatatgggt aaaaaaatta
     1681 tccagttgcc cgagtttttc tgcgcgaaga tatgcatagt taccaaaagt tgctgtcatt
     1741 aacacgccaa gaaaatagcc ttttccactt agcaatgggc atgagatcca tagcccaacc
     1801 agataaacca gcgccccgac aacaaataat agttttgcca cagtttttga ggttttcata
     1861 acgatctcca tatctaccag cgatacatta cgagtaacca acgaaagaca aaactgaaaa
     1921 atgccattaa caaatgattt tcagaataaa ttcatactaa atattaatta gtgagatata
     1981 tagatgtgaa ttatccccca cccggtcagg caggggataa cgtttacgcc attaatggca
     2041 gaagttgctg atagaggcga cggaacgttt cacgtcgtgg ctgataagcg gcataacgct
     2101 gcgcatctgg tagatgcgac tgttctaacg gtagctgcgg caacaactca atgagcgatt
     2161 tctctggatt cgccgcaatc tgcgccagcc ttgctgcgcc cagtgctggc cccacatccc
     2221 cccgtacggt aatcgagctg ctgaccgctg atatccgcca gcatctgacg ccagtactca
     2281 ctacgcgccc cgccaccaat caacgtaaca ctttgcggtt taatgccgca ggcatgcacg
     2341 acatccatgc catctgccag cgcataaccc acgccttcca gcactgctcg cgccagttca
     2401 ttggggccat gttgatgagt caaaccaaag aaaaccccct tcgcctgggg attattgtgt
     2461 ggtgtacgct cgccggaaag ataaggcaga aaccaaactg gctcggcact ttcatcagcc
     2521 tgttgagctg cagcgattaa agctgggaca ttgcacaggc cggttaattt cgcgacccaa
     2581 tccagacacg atgctgcact cagcattaca gacattaaat gccaacgctg cggtagcgca
     2641 tggcaaaagc tgtgtacagc gctttctggc ttgcttaaga acccttcgct gacagcaaaa
     2701 tagacccccg acgtccccag cgataacatt gcctgattag catcaaccat tcccacacca
     2761 actgcattgt cgccaccgcc tgcgacaact ggcaccgtcg ccatacccca cgctttcgca
     2821 acttcaggta acaaagcacc agtaatttcg ctgccttcgt ataatgcggg catctggtca
     2881 cgagataagt cgcaagcctg cagcatgacg tcactccagt cacgctttgc gacatccagc
     2941 cacatggtgc cagctgcgtc agacatatcg ctggcaaact cccccgtcat acgcagacgc
     3001 aagtaatctt tcggtaataa tactttgtcg atttgacgga atatctccgg ctcatgccgc
     3061 tgaacccata gcaatttagg cgcagtaaat ccgggcatca tcaggttgcc ggtaatcact
     3121 cgtgattgcg gaactctcgc ttccagcaaa gtgcactctt gcgcacagcg cccgtcgttc
     3181 cacaaaatgg cagggcgcaa tacccgttgt tgagcatcca gtaaggttgc tccatgcatc
     3241 tggccggcaa tacccaatgc tttaacgtcc tgcagagaat gctgatcgcc cagagctttc
     3301 attgcgcgat cagttgcctg ccaccactgt tccgggtctt gttccgacca gagtggatgc
     3361 gggcgcgaaa cggtcagctt ttccgtttgc gaagcaacca cctcaccctg ctcgttgagc
     3421 aaaataactt ttacgcccga ggtgccaaga tctatcccga tatacatatc gatcgttcct
     3481 taaaaaaatg cccggtatcg ctaccgataa ccgggccaac ggactgcaca gttagccgtt
     3541 atttgtcgaa cagataatga tttaccagat tttccagttg ctcctagcga ccactctgat
     3601 gcaccggaga caaattatgt tcctgagcat atttggctaa atctgccagt gacatttggc
     3661 ctttcaggat ttgctggccc aattcgctat tccagccgga ataacgctgc gcgatgcgtt
     3721 tatccagctc gccatcttca atcatgcgcg ctgcaatttt cagcgccagt gccatcgtat
     3781 ccatcgcgcc gatatgaccg taaaacagat catatttatc agtactttga cgacgtactt
     3841 tggcatcgaa gttcagacca ccggtggtga aaccgcctgc tttgagaatt tcatacatca
     3901 ccagcgcatt ctcttccaca ctgttcggga actggtcggt gtcccagccc agttgcgcat
     3961 cgccacggtt ggcgtcgaca gaaccgaaca ggccaagcgc aatggcggtg gctatttcat
     4021 gatggaaaga gtgacctgcc agcgtcgcgt ggttagcttc aatgttcagt ttaatctctt
     4081 tttccagacc aaactgtttc aggaagccat agaccgtcgc ggcatcgtaa tcatattgat
     4141 gtttagtcgg ttcttgcggt ttcggttcga taagcaacgt gccctggaag ccgattttat
     4201 gtttatgctc aaccaccatc tgcataaagc ggcccagttg ttcacgctcc tgacgcaagt
     4261 cggtatttaa cagcgtttcg taaccttcac gaccacccca caggacatag ttttcaccgc
     4321 ccaatttatg ggttgcttcc atcgctgtaa caacttgcgt tgccgcccag ctgaagactt
     4381 caggatctgg gttcgtcgcc gcacccgcgc catagcgagg gtttgtaaag cagttagcgg
     4441 ttccccacag cagcttcacg ccgctctctt cttgcttggc tgccaggaca tcaaccattt
     4501 gcgcaaaatt attgatgtac tcttttaacg acgcgccctc aggggaaaca tccacatcgt
     4561 ggaagcaata aaatgacaca tgtaacttgt ggaaaaactc aaatgcgaca tctgctttac
     4621 gcttcgccaa cgccagtgcc tcaccaggct gctgccacgg acgattaaac gcccccacac
     4681 caaacatgtc cgccccgttc cagcagaagg tgtgccagta acaggcggca aaacgcaagt
     4741 gctcttccat acgcttaccc aacaccagtt cgtcgggatt gtagtgacgg aatgctaacg
     4801 ggtttgagga ttttgagcct tcataacgaa cgcgatcgag ctggtcaaaa taggcttgca
     4861 tattgaactc cataatcagg taatgccgcg ggtgatggat gatgtcgtaa tattgggcac
     4921 tccctttcag ttgctcaatt atgttatttc acactgctat tgagataatt cacaagtgtg
     4981 cgctcgctcg caaaataaaa tgggatgatg aaactgggta attcctcgaa gataaaaatg
     5041 caataagtac aattgcgcaa caaaagtaag atctcggtca taaatcaaga aataaaccaa
     5101 aaatcgtaat cgaaagataa aaatctgtaa ttgttttccc ctgtttagtt gctaaaaatt
     5161 ggttacgttt atcgcggtga ttgttactta ttaaagctgt cctctaacta cagaaggccc
     5221 tacaccatga aaataaagaa cattctactc accctttgca cctcacttct gcttaccaac
     5281 gttgcggcac acgccaaaga agtcaaaata ggtatggcga ttgatgatct acgtcttgaa
     5341 cgctggcaaa aagatcgaga tatttttgtg aaaaaggctg aatctctcgg tgcgaaagta
     5401 tttgtacagt ctgcaaatgg caatggagaa acacaaatgt cgcagattga aaacatgatt
     5461 aaccggggtg tcgatgttct tgtcattatt ccgtataacg gccaggtatt aagtaacgtt
     5521 gtaaaagaag ccaaacaaga aggtattaaa gtattagctt acgaccgtat gattaacgat
     5581 gcggatatcg atttttatat ttctttcgat aacgaaaaag tcggtgaact gcaggcaaaa
     5641 gccctggtcg atattgttcc gcaaggtaat tacttcctga tgggcggctc gccggtagat
     5701 aacaacgcca agctgttccg cgccggacaa atgaaagtgt taaaacctta cgttgattcc
     5761 ggaaaaatta aagtcgttgg tgaccaatgg gttgatggct ggttaccgga aaacgcgcta
     5821 accgccaata ataacaaaat tgatgctgta gttgcctcaa acgatgccac cgcaggtggg
     5881 gcaattcagg cattaagcgc gcaaggttta tcagggaaag tagcaatttc cggccaggat
     5941 gcggatctcg caggtattaa acgtattgct gccggtacgc aaactatgac ggtgtataaa
     6001 cctattacat tgctggcaaa tactgccgca gaaattgccg ttgaattggg caatggtcag
     6061 gagccaaaag cagatacctc actgaataat ggcctgaaag atgtcccctc ccgcctcctg
     6121 acaccgatcg atgtgaataa aaacaacatc aaagatacgg taattaaaga cggattccac
     6181 aaagagagcg agctgtaagc gttacgcccc ggcgcggagc gggggcgtga tttctctcca
     6241 tgccgcgtga atgaattggc ttaggtggag tcgttatgcc ttatctactt gaaatgaaga
     6301 acattaccaa aaccttcggc agtgtgaagg cgattgataa cgtcagcttg cggttgaatg
     6361 ctggcgaaat cgtctcactc tgtggggaaa atgggtctgg taaatcaacg ctgatgaaag
     6421 tgctgtgtgg tatttatccc catggctcct acgaaggcga aattattttt gcgggagaag
     6481 agattcaggc gagtcacatc cgcgataccg aacgcaaagg tatcgccatc attcaccagg
     6541 aattggccct ggtgaaagaa ttgaccgtgc tggaaaatat cttcctgggt aacgaaataa
     6601 cccacaatgg cattatggat tatgacctga tgacgctacg ctgtcagaag ctgctcgcac
     6661 aggtcagttt atccatttca cctgataccc gcgttggcga tttagggctt gggcaacaac
     6721 aactggttga aattgccaag gcacttaata aacaggtgcg cttgttaatt ctcgatgaac
     6781 cgacagcctc attaactgag caggaaacgt cggttttact ggatattatt cgcgatctac
     6841 aacagcacgg tatcgcctgt atttatattt cgcacaaact caacgaagtc aaagcgattt
     6901 ccgatacgat ttgcgttatt cgcgacggtc agcacattgg tacgcgtgat gctgccggaa
     6961 tgagtgaaga cgatattatc accatgatgg tcgggcgaga gttaaccgcg ctttacccta
     7021 atgaaccaca taccaccgga gatgaaatat tacgtattga acatctgacg gcatggcatc
     7081 cggttaatcg tcatattaaa cgagttaatg atgtctcgtt ttccctgaaa cgtggcgaaa
     7141 tactgggtat tgccggactc gttggtgccg gacgtaccga gaccattcag tgcctgtttg
     7201 gcgtgtggcc cggacaatgg gaaggaaaaa tttatattga tggcaaacag gtagatattc
     7261 gtaactgtca gcaagccatc gcccagggga ttgcgatggt acccgaagac agaaagcgcg
     7321 acggcatcgt tccggtaatg gcggttggta aaaatattac cctcgccgca ctcaataaat
     7381 ttaccggtgg cattagccag cttgatgacg cggcagagca aaaatgtatt ctggaatcaa
     7441 tccagcaact caaagttaaa acgtcgtccc ccgatcttgc tattggacgt ttgagcggcg
     7501 gcaatcagca aaaagcgatc ctcgcccgct gtctgcgcat tctcattctt gatgaaccta
     7561 ccaggggtat tgatattggc gcgaaatatg agatctacaa attaattaac caactcgtcc
     7621 agcagggtat tgccgttatt gtcatctctt ccgaattacc tgaagtgctc ggccttagcg
     7681 atcgtgtact ggtgatgcat gaagggaaac taaaagccaa cctgataaat cataacctga
     7741 ctcaggagca ggtgatggaa gccgcattga ggagcgaaca tcatgtcgaa aagcaatccg
     7801 tctgaagtga aattggccgt accgacatcc ggtggctttt ccgggctgaa atcactgaat
     7861 ttgcaggtct tcgtgatgat tgcagctatc atcgcaatca tgctgttctt tacctggacc
     7921 accgatggtg cctacttaag cgcccgtaac gtctccaacc tgttacgcca gaccgcgatt
     7981 accggcatcc tcgcggtagg aatggtgttc gtcataattt ctgctgaaat cgacctttcc
     8041 gtcggctcaa tgatggggct attaggtggc gtcgcggcga tttgtgacgt ctggttaggc
     8101 tggcctttgc cacttaccat cattgtgacg ttggttctgg gactgcttct cggtgcgtgg
     8161 aacggatggt gggtcgcgta ccgtaaagtc ccttcattta ttgtcaccct cgcgggcatg
     8221 ttggcatttc gcggcatact cattggcatc accaacggca cgactgtatc ccccaccagc
     8281 gccgcgatgt cacaaattgg gcaaagctat ctccccgcca gtaccggctt catcattggc
     8341 gcgcttggct taatggcttt tgttggttgg caatggcgcg gaagaatgcg ccgtcaggct
     8401 ttgggtttac agtctccggc ctctaccgca gtagtcggtc gccaggcttt aaccgctatc
     8461 atcgtattag gcgcaatctg gctgttgaat gattaccgtg gcgttcccac tcctgttctg
     8521 ctgctgacgt tgctgttact cggcggaatg tttatggcaa cgcggacggc atttggacga
     8581 cgcatttatg ccatcggcgg caatctggaa gcagcacgtc tctccgggat taacgttgaa
     8641 cgcaccaaac ttgccgtgtt cgcgattaac ggattaatgg tagccatcgc cggattaatc
     8701 cttagttctc gacttggcgc tggttcacct tctgcgggaa atatcgccga actggacgct
     8761 attgcagcat gcgtgattgg cggcaccagc ctggctggcg gtgtgggaag cgttgccgga
     8821 gcagtaatgg gggcatttat catggcttca ctggataacg gcatgagtat gatggatgta
     8881 ccgaccttct ggcagtatat cgttaaaggt gcgattctgt tgctggcagt atggatggac
     8941 tccgcaacca aacgccgttc ttgattttga taaaaatttt ctcaaagccg gttacgtatt
     9001 accggttttg agtttttgca tgattcagca ggaaaagaac catgtttact aaacgtcacc
     9061 gcatcacatt actgttcaat gccaataaag cctatgaccg gcaggtagta gaaggcgtag
     9121 gggaatattt acaggcgtca caatcagaat gggatatttt cattgaagaa gatttccgcg
     9181 cccgcattga taaaatcaag gactggttag gagatggcgt cattgccgac ttcgacgaca
     9241 aacaaatcga gcaagcgctg gctgatgtcg acgtccccat tgttggggtt ggcggctcgt
     9301 atcaccttgc agaaagttac ccacccgttc attacattgc caccgataac tatgcgctgg
     9361 ttgaaagcgc atttttgcat ttaaaagaga aaggcgttaa ccgctttgct ttttatggtc
     9421 ttccggaatc aagcggcaaa cgttgggcca ctgaacgcga atatgcattt cgtcagcttg
     9481 tcgccgaaga aaagtatcgc ggagtggttt atcaggggtt agaaaccgcg ccagagaact
     9541 ggcaacacgc gcaaaatcgg ctggcagact ggctacaaac gctgccaccg caaaccggga
     9601 ttattgccgt tactgacgcc cgggcgcggc atattctgca agtatgtgaa catctacaca
     9661 ttcccgtacc ggaaaaatta tgcgtgattg gcatcgacaa cgaagaactg acccgctatc
     9721 tgtcgcgtgt cgccctttct tcggtcgctc agggcgcgcg gcaaatgggc tatcaggcgg
     9781 caaaactgtt gcatcgatta ttagataaag aagaaatgcc gctacagcga attttggtcc
     9841 caccagttcg cgtcattgaa cggcgctcaa cagattatcg ctcgctgacc gatcccgccg
     9901 ttattcaggc catgcattac attcgtaatc acgcctgtaa agggattaaa gtggatcagg
     9961 tactggatgc ggtcgggatc tcgcgctcca atcttgagaa gcgttttaaa gaagaggtgg
    10021 gtgaaaccat ccatgccatg attcatgccg agaagctgga gaaagcgcgc agtctgctga
    10081 tttcaaccac cttgtcgatc aatgagatat cgcaaatgtg cggttatcca tcgctgcaat
    10141 atttctactc tgtttttaaa aaagcatatg acacaacgcc aaaagagtat cgcgatgtaa
    10201 atcgcgaggt catgttgtag cgatgatgag aattgtcggc gtcacatcag ggaactcagc
    10261 acagccacct gatgcgagca aaagccttat ccgaccgaca aatcagataa ggctcaagga
    10321 aatgcaatta catatgcgcc gcgattaacc gttggttatc ctggtacatt gcgaacaggt
    10381 agttattata actcttccct ttggtcgagt agcccttcag cttgtgaatc atcgctgtgg
    10441 cagtcacttc ctgatccgct ttacgcagct gcgcacgcga tttacggaac gaagagtaag
    10501 ccgggtgcgt attcaggtta gtgacatagg cgctcaccga ttctttgaca gaactaaact
    10561 gtgagtaccc tttcacttta cccggcgcat tggtacaacg tcctttcatg catttcatgc
    10621 cgaacagatt gttattgttg cgcgccagct tcgacgttcc ccaaccgctt tctgctgcag
    10681 ccatcgtcgc caccatactg gtagggataa tgtctacgcg ttcaagcaag gtattccacg
    10741 ggatttttcg cgtattacca gaccacttca ccttgtagcg tttggcgatg tctttcagac
    10801 gcgcacgctc agcaggtgac cattggccct gatactgttt tgaaatcagc cagttacgtt
    10861 ctgcagtaat ggctgcattt tggctggtaa tgtaaggcat tacggtccgg agaaacgcct
    10921 ttttccttgg tgttccggaa gggtattttc gcaaatcagg aagtgaacta ctctttgcac
    10981 tattgcgaga atactcttgt ttactgctta cctgtttatt actagcttta gttaagtggg
    11041 acttttgact cgctgttgtt gtgtgcgtct tcgctaacac ctcactcgaa aacaccagag
    11101 tgagtaacat aagaatcatc gccccatatc gtcgtatggg agtcaaaatc atcaggtctc
    11161 ctggtcggat ttaatcattc caacacctta tatttttcac aaatttgaga gttgaatctc
    11221 aaatcatatc aaaaatagct gtcaagagca ccccaaggaa tagtccaaat ctgaaactat
    11281 gtcacgagtt aacgattcag attggcgcta aatcgcagaa aatgtggggt ttatcgcaaa
    11341 attcagccgt tttttgcgcg cgatcgctca cccttgcttc tcatcctgtg gacttaccgc
    11401 tcagggatga gttttgtctg gcttatcgct ggcaaactgt ctgaaatcgc agcaataagg
    11461 actcatccac catgaaactc gcctcctgtt ttctgacact ccttcctggc ttcgccgttg
    11521 ccgccagctg gacttctccg gggttccctg cctttagcga acagggaacg ggaacatttg
    11581 tcagccacgc gcagttgccc aaaggtacgc gtccactcac gctaaatttt gaccaacagt
    11641 gctggcagcc tgcagatgcg ataaaactca atcagatgct ttccctgcaa ccttgtagca
    11701 acacgccgcc tcaatggcga ttgttcaggg acggcaaata tacgctgcaa atagacaccc
    11761 gctccggtac gccaacattg atgatttcca tccagaacgc cgccgaaccg gtagcaaacc
    11821 tggtccgtga atgcccgaaa tgggatggat taccgctcac gctggatgtc agcgccactt
    11881 tcccggaagg agccgccgta cgggattatt acagccagca aattgcgata gtgaagaacg
    11941 gtcaaataac gttacaaccc gctgctacca gcaacggttt actcctgctg gaacgggcag
    12001 aaactgacac atccgcccct ttcgactggc ataacgccac ggtttacttt gtgctgacag
    12061 atcgtttcga aaacggcgat cccagtaatg accagagtta cggacgtcat aaagacggta
    12121 tggcggaaat tggcactttt cacggcggcg atttacgcgg cctgatcaac aaactggatt
    12181 acctccagca gttgggcgtt aatgctttat ggataagcgc cccatttgag caaattcacg
    12241 gctgggtcgg cggcggtaca aaaggcgatt tcccgcatta tgcctaccac ggttattaca
    12301 cacaggactg gacgaatctt gatgccaata tgggcaacga agccgatcta cggacgctgg
    12361 ttgatagcgc acatcagcgc ggtattcgta ttctctttga tgtcgtgatg aaccacaccg
    12421 gctatgccac gctggcggat atgcaggagt atcagtttgg cgcgttatat ctttctggtg
    12481 acgaagtgaa aaaaacgctg ggtgaacgct ggagcgactg gaaacctgcc gccgggcaaa
    12541 cctggcatag ctttaacgat tacattaatt tcagcgacaa aacaggctgg gataaatggt
    12601 ggggaaaaaa ctggatcaga acggatatcg gcgattacga caatcctgga ttcgacgatc
    12661 tcactatgtc gctggccttt ttgccggata tcaaaaccga atcaactacc gcttctggtc
    12721 tgccggtgtt ctataaaaac aaaacggata ctcacgctaa agtcatcgaa ggctttacac
    12781 ctcgcgatta cttaacccac tggttaagtc agtgggtccg cgactatggg attgatggtt
    12841 ttcgggtcga taccgccaaa catgttgagt tgcccgcctg gcagcaactg aaaaccgaag
    12901 ccagctccgc gcttcgcgaa tggaaaaaaa ctaaccccga caaagcatta gatgacaaac
    12961 ctttctggat gaccggtgaa gcctggggcc acggcgtgat gcaaagtgac tactatcgcc
    13021 acggcttcga tgcgatgatc aatttcgatt atcaggagca ggcggcgaaa gcagtcgatt
    13081 gtctggcgca gatggatacg acctggcagc aaatggcgga gaaattgcag ggtttcaacg
    13141 tgttgagcta cctctcgtcg catgataccc gtctgttccg tgaagggggc gacaaagcag
    13201 cagagttatt actattagcg ccaggcgcgg tacaaatctt ttatggcgat gaatcctcgc
    13261 gtccgttcgg tcctacaggt tctgatccgc tgcaaggtac acgttcggat atgaactggc
    13321 aggatgttag cggtaaatct gccgccaacg tcgcgcactg gcagaaaatc agccagttcc
    13381 gcgcccgcca tcccgcaatt ggcgcgggca aacaaacgac actttcgctg aagcagggct
    13441 acggctttgt tcgtgagcat ggcgacgata aagtgctggt catctgggct gggcaacagt
    13501 gacttttccg gcttcccgtt catcagtacc tcgggaagcc gccaaccagg ataaaatgtc
    13561 agccctaatc agcgttgcag gataaagcac cgctcactct tcaacagacc gatttgcacc
    13621 ccagcaaatg tagcgttatt gttaccttcc ttgctacaga gttcgacaga tatcccgcta
    13681 tgacattctc cctttttggt gacaaattta cccgccactc cggcattacg ctgctgatgg
    13741 aagatctgaa cgacggttta cgcacgcctg gcgcgattat gctcggcggc ggtaatccgg
    13801 cgcagatccc ggaaatgcag gactacttcc agacgctact gaccgacatg ctggaaagtg
    13861 gcaaagcgac tgatgcactg tgtaactacg acggtccaca ggggaaaacg gagctactca
    13921 cactgcttgc cggaatgctg cgcgagaagt tgggttggga tatcgaacca cagaatattg
    13981 cactaacaaa cggcagccag agcgcgtttt tctacttatt taacctgttt gccggacgcc
    14041 gtgccgatgg tcgggtcaaa aaagtgctgt tcccgctggc accggaatac attggctacg
    14101 ctgacgccgg actggaagaa gatctgtttg tctctgcgcg tccgaatatt gaactgctgc
    14161 cggaaggcca gtttaaatac cacgtcgatt ttgagcatct gcatattggc gaagaaaccg
    14221 ggatgatttg cgtctcccgg ccgacgaatc caacaggcaa tgtgattact gacgaagagt
    14281 tgctgaagct tgacgcgctg gcgaatcaac acggcattcc gctggtgatt gataacgctt
    14341 atggcgtccc gttcccgggt atcatcttca gtgaagcgcg cccgctatgg aatccgaata
    14401 tcgtgctgtg catgagtctt tccaagctgg ggctgcctgg ctcccgctgc ggcattatca
    14461 tcgccaatga aaaaatcatc actgccatca ccaatatgaa cggcattatc agcctggcac
    14521 ctggcggtat tggtccggcg atgatgtgtg aaatgattaa gcgtaacgat ctgctgcgcc
    14581 tgtctgaaac agtcatcaaa ccgttttact accagcgtgt tcaggaaact atcgccatca
    14641 ttcgccgcta tttaccggaa aatcgctgcc tgattcataa accggaagga gccattttcc
    14701 tctggctatg gtttaaggat ttgcccatta cgaccgagca gctctatcag cgcctgaaag
    14761 cacgcggcgt gctgatggtg ccggggcaca acgtcttccc gggactggat aaaccgtggc
    14821 cgcatacgca tcaatgtatg cgcatgaact acgtaccaga gccggagaaa attgaggcgg
    14881 gggtgaagat tctggcggaa gagatagaaa gagcctgggc tgaaagtcac taaaaattgc
    14941 ctgatgcgct acgcttatca ggcctacatg atttctgcaa tatattgaat ttggaagaat
    15001 ttgtaggccg gataaggcgt ttacgccgca tctggcataa acaaagcgca ctattccggc
    15061 gttgagaaac gccggaaaac gtttcaaaca ggctgctgcc gtagccgatg ccgctgcact
    15121 ttctcgacat ccatgcactg caacgccttt gtcgggcagg cttcaacaca ggccggcccc
    15181 gtctcccgat gccagcacag atcgcactta atcgccctcg cctttttgcg cgaagaaacg
    15241 acctccatcg caccaaacgg gcaagccagc atacagcttt tacagccaat gcaacgtgtt
    15301 tgttcaacga aaatatgccc atgttcgcgg cttatcgcgt caacagggca gacattcgcg
    15361 cacggtgcat cttcacactg atgacaggct actgccgtgg tccagctgtg gtctttaatg
    15421 acacgaatac gggaaataaa ctcgtctggt gacaacgcag cgcaatcctg attctcctga
    15481 tgcgacactg cgcaagccac ttcacaggta cggcaaccga tacatttcgt cgcatccgca
    15541 ataataaacc ggttcatgat cactcctttg cactaaaaca gcagagtgcc agagagcgcg
    15601 tccctactgc tttgatccaa cgaaggaaat gttaaagttt tggcacttgt ccaaagcgtt
    15661 atgtgatcgc gcccaggtca tccctgacag taaatcccag ttcattagaa atagcctgcg
    15721 cggtttcacg cagtggtttc aggagatttt tctctcccac ctgtttcaga cgtgatgtcg
    15781 aaagcgaaat cgacacggcg tacggcaccc gcccatgaat atcaaacacc ggaacagcaa
    15841 tacaggagac gccgagttcg ttttcttctc tgtccatcgc cgctccgctt tcacgaatgt
    15901 gcgccagttc gtcgaacatc gcgggcagct cggtaatggt attgcgggtt aacggctgga
    15961 tctcatgctg atggttttcc cagtatgact tcacgtagtc cgggtgacca aacgccatgt
    16021 agatcttgcc cattgcggaa cagtagagcg gcatatgctg gccaatatag gcacgggttc
    16081 gcagcatccc ggttgtgggt tccagcttat aaatcaaaat agcgtgatcg tcttcgcggc
    16141 tggagaagtt aatggtttca ccagtggcga tgttcagtgc ctcaagatgc ggagcggcga
    16201 tatgaatgat attcagcgaa gacagcgcct tctgcccgac ggcaataaat ttggtagtca
    16261 ggcggtaact ccctgcggcg ggcgcggtgg tcacatagcc gcaggactgt aatccctgca
    16321 ataagcgatg gacggtactc ttatttaaac cagccagctc cgaaagatgc gccaacggac
    16381 aaccgtttgg atagttgctc aaaatctcaa tcagcatcaa cccgcgaaac agactctggc
    16441 ttccggctgg acgctctttt tcctgcgcca tctcgttctc tttttttccc atcacttctt
    16501 tccccatttt gtcgcgtcct gatggtagcg caaagtgtgc cgtagttcac gatctcgaca
    16561 gataatttat aaccacttga tttttatgtc ttttgaaatt catcaatcag attgctttgt
    16621 taaaaagtga tcgatatatt tgaaatcaag tttcgcatat tgaaatttta agccaaaaaa
    16681 gcgatcaaaa aaacaaggaa gcctgggatg aaagtgacat ttgagcagtt aaaagcagcc
    16741 tttaatcggg ccttaatttc acgcggcgtt gacagcgaaa cggctgacgc ctgtgcagag
    16801 atgttcgccc gcaccaccga atccggcgtt tattctcacg gcgttaatcg tttccctcgt
    16861 ttcattcaac aactggaaaa cggcgatatc attcctgatg cccaacccaa acgtataacc
    16921 agcctcggcg caattgaaca gtgggatgcc cagcgttcga tcggcaacct gacggcgaaa
    16981 aagatgatgg atcgcgccat tgaactggct gccgatcacg gtattggtct ggtggcactt
    17041 cgtaatgcca accactggat gcgcggcggc agctacggct ggcaggcggc ggaaaaaggc
    17101 tatattggca tttgctggac caactccatc gccgtaatgc cgccgtgggg cgcaaaagag
    17161 tgtcgcattg gcactaaccc gctgatcgtc gccattcctt ccacgccgat caccatggtc
    17221 gatatgtcga tgtcgatgtt ctcttacggc atgttagaag ttaaccgcct ggcgggccgt
    17281 cagctcccgg tcgatggtgg ctttgatgat gagggcaatt tgaccaaaga acctggcgtt
    17341 atcgagaaga atcgccgcat tttgccgatg ggctactgga aaggttctgg catgtcgatt
    17401 gtgctggata tgatcgctac tctcctttcc gacggcgcat cggttgccga agtcacccag
    17461 gacaacagcg acgaatacgg catttcacaa atttttattg ccattgaagt ggacaagctt
    17521 atcgacggtc ccacccgcga tgccaagctg caacgcatca tggattacgt tactaccgct
    17581 gaacgcgctg acgaaaacca ggccatccgc ttacccggcc acgaatttac taccctgctg
    17641 gccgaaaacc gccgtaacgg catcactgtt gatgacagcg tgtgggccaa aatccaggcg
    17701 ttatgaggag ataagtcatg atttttggac atatcgcgca gcccaatccg tgccgtttgc
    17761 ccgccgccat tgaaaaggcg ctcgattttc tgcgcgctac caacttcaac gtcctggagc
    17821 cgggcgttgt cgaaatcgac ggcaagaata tttatgcgca aattatcgat ttaaccacac
    17881 gcgaagcggt ggaaaaccgt ccggaagtgc atcgtcggta tatcgatatt cagtttctgg
    17941 cgtggggtca agagaaaatc ggcattgcta ttgatacagg aaataataaa gtcagcgaat
    18001 cactattaga gcagcgcgat attatttttt atcatgtcag tgaacatgaa tcatttatag
    18061 aaatgatacc gggcagctac gctattttct tcccgcagga tgttcaccga ccaggttgta
    18121 ttctgcaaac aggcctctga gatacgaaaa attgtggtta aagtcgcatt aacagcgctg
    18181 aattaatcaa ataatcgtct acgccagaac gactgggtaa tgttattgct ctaactatat
    18241 taataattta ggttgctgca catgcaactt gaattatgac agacatagcc tcaaggaata
    18301 gctatgaaaa aaatacttga agtaatactg gcgattaatc tcgccgtact ttcctgtatt
    18361 gtgtttataa acattatttt aagatatggt tttcagacaa gcattttatc tgtagatgaa
    18421 ttgtcacgtt atttatttgt ctggttaaca tttattggcg cgattgtggc ttttatggat
    18481 aacgcccacg ttcaggtcac ctttctggtg gagaaactct cccccgcatg gcaacgacga
    18541 gtcgctctgg ttacccattc cttaatctta tttatttgtg gcgcactggc ctggggcgca
    18601 acactaaaaa caattcagga ctggagcgat tattcaccga tcctcggttt gcccatcggc
    18661 ctgatgtatg ccgcttgtct gcccaccagc ctcgttatcg cattctttga actgcgtcat
    18721 ttatatcaac tcatcacgcg tagcaattct ctaacgtcgc caccgcaagg agcttaatca
    18781 tggctgtgct gatttttctg ggctgtctgt tgggtggtat tgctatcggt ttgcctattg
    18841 cctgggcact gttgttgtgc ggggcggcgt taatgttctg gctggacatg tttgatgtcc
    18901 agatcatggc acaaacgctg gtgaacggag ccgatagctt ctccctgctg gcgattccgt
    18961 tctttgtgct ggcgggtgaa atcatgaatg cgggcggctt gtcaaaacgc attgttgacc
    19021 tgccgatgaa actggtgggg cataaaccag gcgggctggg ctacgtcggc gtgctggcag
    19081 ctatgattat ggcgagcctt tctggttctg ccgttgcgga taccgccgcc gttgccgctc
    19141 tactggtgcc gatgatgcgc agcgccaact acccggtcaa ccgggcggcg gggctgattg
    19201 cctctggcgg cattatcgcg ccaattattc ccccttccat tccgtttatt atcttcggcg
    19261 tttccagcgg attatccatc agtaagctgt ttatggcggg cattgcccct gacatgatga
    19321 tgggcgcaac gctgatgctt acctggtggt ggcaggccag tcgccttaat ttaccccgcc
    19381 agcaaaaagc aacgatgcag gaaatctggc actcttttgt ctccggtatc tgggctctgt
    19441 ttcttccagt catcattatt ggcgggtttc gctccggtct gtttacccct accgaagccg
    19501 gggccgttgc tgctttctat gcgctgtttg tcgccacagt tatttaccgt gaaatgacct
    19561 tcgccacact ttggcatgta ctcattggcg cggcgaaaac cacctcagtg gttatgtttc
    19621 tggtggcctc ggcacaagtt tccacctggc tgattaccat tgctgaactg ccgatgatgg
    19681 tttctgattt actgcaaccg ttggtcgatt caccgcgtct gctgtttatc gtcattatgg
    19741 tggctatcct gattgtcggc at
//
LOCUS       DAJVSY010000073        19637 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.073, whole genome shotgun sequence.
ACCESSION   DAJVSY010000073 DAJVSY010000000
VERSION     DAJVSY010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19637
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.073"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            6..81
                     /locus_tag="OQQ19_002289"
     tRNA            6..81
                     /locus_tag="OQQ19_002289"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:39..41,aa:Thr,seq:ggt)
     gene            121..236
                     /gene="rrf"
                     /locus_tag="OQQ19_002290"
     rRNA            121..236
                     /gene="rrf"
                     /locus_tag="OQQ19_002290"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(468..1226)
                     /locus_tag="OQQ19_002291"
     CDS             complement(468..1226)
                     /locus_tag="OQQ19_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HCS1803895.1"
                     /translation="MSQILLQPANAMITLENVHKWYGQFHVLKNINLTVQPGERIVLC
                     GPSGSGKSTTIRCINHLEEHQQGRIVVDGIELNEDIRNIERVRQEVGMVFQHFNLFPH
                     LTVLQNCTLAPIWVRKMPKKEAEALAMHYLERVRIAEHAHKFPGQISGGQQQRVAIAR
                     SLCMKPKIMLFDEPTSALDPEMVKEVLDTMIGLAQSGMTMLCVTHEMGFARTVADRVI
                     FMDRGEIVEQAAPDEFFTHPKSERTRAFLSQVIH"
     gene            complement(1234..2337)
                     /locus_tag="OQQ19_002292"
     CDS             complement(1234..2337)
                     /locus_tag="OQQ19_002292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709065.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HCS1803896.1"
                     /translation="MTKVLLSQPSRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWL
                     MWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINL
                     VLLIGLVSIAPMFWKILPHRGRYIAVWAVIYPLIVWWLMYGGFFGLERVETRQWGGLT
                     LTLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVML
                     PLFMAEGTSIDKLIRALVGVILFQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQ
                     GLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEG
                     YVFAALIYWIFCFSMSRYSQHLKKRFNTGRTPH"
     gene            complement(2347..3517)
                     /locus_tag="OQQ19_002293"
                     /pseudo
     CDS             complement(2347..3517)
                     /locus_tag="OQQ19_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026209.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
     gene            complement(3585..4664)
                     /locus_tag="OQQ19_002294"
     CDS             complement(3585..4664)
                     /locus_tag="OQQ19_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1803897.1"
                     /translation="MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDG
                     LLGFSYADADGKFSGIDVDVDVDVDVDVDVDVDVDVDVCRSVAAAVFGDDTKVKYTPL
                     TAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAK
                     ELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQS
                     QLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGIN
                     SQNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVGSE
                     SPLKIKRGQNNLWNNGGIQYAPPVR"
     gene            complement(5095..5316)
                     /locus_tag="OQQ19_002295"
     CDS             complement(5095..5316)
                     /locus_tag="OQQ19_002295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803898.1"
                     /translation="MKRLIPVALLTALLAGCAHDSPCVPVYDDQGCLVHTNTCMKGTT
                     QDNWETAGAIAGGAAAVAGLTMGIIALSK"
     gene            complement(5569..8673)
                     /gene="acrF"
                     /locus_tag="OQQ19_002296"
     CDS             complement(5569..8673)
                     /gene="acrF"
                     /locus_tag="OQQ19_002296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit AcrF"
                     /protein_id="HCS1803899.1"
                     /translation="MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVS
                     VSANYPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTNDSAGSVTITLTFQSGTDPDI
                     AQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVAS
                     NVKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQ
                     LGGTPALPGQQLNASIIAQTRLKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYN
                     VIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ
                     LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLS
                     AVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENK
                     GGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEE
                     DQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAG
                     MAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFE
                     LIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALSV
                     SLSDINQTISTALGGTYVNDFIDRGRVKKVYVQADAKFRMLPEDVDKLYVRSANGEMV
                     PFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASKLPAGIGY
                     DWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA
                     ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLR
                     PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFLPVFFVVIRR
                     CFKG"
     gene            complement(8685..9842)
                     /gene="acrE"
                     /locus_tag="OQQ19_002297"
     CDS             complement(8685..9842)
                     /gene="acrE"
                     /locus_tag="OQQ19_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit AcrE"
                     /protein_id="HCS1803900.1"
                     /translation="MTKHARFFLLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIV
                     KTAPLEVKTELPGRTNAYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQA
                     NYNSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAK
                     GTVESARINLAYTKVTAPISGRIGKSTVTEGALVTNGQTTELATVQQLDPIYVDVTQS
                     SNDFMRLKQSVEQGNLHKENATSNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLR
                     AVFPNPQHTLLPGMYVRARIDEGVQPDAILIPQQGVSRTPRGDATVLIVNDKSQVEAR
                     PVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVKATTDTPADTASK"
     gene            10241..10903
                     /gene="acrS"
                     /locus_tag="OQQ19_002298"
     CDS             10241..10903
                     /gene="acrS"
                     /locus_tag="OQQ19_002298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter transcriptional
                     repressor AcrS"
                     /protein_id="HCS1803901.1"
                     /translation="MAKRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVT
                     RGAIYWHFENKTQLFNEMWLQQPSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYIAK
                     IPRQQALLKILYHKCEFNDEMLAEGVIREKMGFNPQTLREVLQACQQQGCVANNLDLD
                     VVMIIINGAFSGIVQNWLMNMAGYDLYKQAPALVDNVLRMFMPDENITKLIHQTNELS
                     VM"
     gene            complement(10906..11085)
                     /locus_tag="OQQ19_002299"
     CDS             complement(10906..11085)
                     /locus_tag="OQQ19_002299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2556 family protein"
                     /protein_id="HCS1803902.1"
                     /translation="MIRKYWWLVVFAVFVFLFDTLLMQWIELLTTETDKCRNMNSVNP
                     LKLVNCDELNFQDRM"
     gene            complement(11169..12053)
                     /gene="yhdJ"
                     /locus_tag="OQQ19_002300"
     CDS             complement(11169..12053)
                     /gene="yhdJ"
                     /locus_tag="OQQ19_002300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417728.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine-specific DNA-methyltransferase"
                     /protein_id="HCS1803903.1"
                     /translation="MRTGCEPTRFGNEAKTIIHGDALAELKKIPAESVDLIFADPPYN
                     IGKNFDGLIEAWKEDLFIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKLF
                     TIKSRIVWSYDSSGVQAKKHYGSMYDPILMMVKDAKNYTFNGDAILVEAKTGSQRALI
                     DYRKNPPQPYNHQKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDII
                     LDPFAGSFTTGAVAVSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTG
                     NLSKRSRLSEVDPDLIAK"
     gene            complement(12139..12435)
                     /gene="fis"
                     /locus_tag="OQQ19_002301"
     CDS             complement(12139..12435)
                     /gene="fis"
                     /locus_tag="OQQ19_002301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001465625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator Fis"
                     /protein_id="HCS1803904.1"
                     /translation="MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNG
                     QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN"
     gene            complement(12461..13426)
                     /gene="dusB"
                     /locus_tag="OQQ19_002302"
     CDS             complement(12461..13426)
                     /gene="dusB"
                     /locus_tag="OQQ19_002302"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008785970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HCS1803905.1"
                     /translation="MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSS
                     NPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPA
                     KKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAED
                     CGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGA
                     DALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGY
                     RIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENFA"
     gene            complement(13755..14636)
                     /gene="prmA"
                     /locus_tag="OQQ19_002303"
     CDS             complement(13755..14636)
                     /gene="prmA"
                     /locus_tag="OQQ19_002303"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HCS1803906.1"
                     /translation="MPWIQLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPL
                     PGETRLWGDTDVIGLFDAETDMNDVVAILENHPLLGAGFAHKIEQLEDKDWEREWMDN
                     FHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGK
                     TVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQ
                     PEEMKADVVVANILAGPLRELAPLISVLPVSGGLLGLSGILASQAESVCEAYADSFAL
                     DPVVEKEEWCRITGRKN"
     gene            complement(14648..16099)
                     /gene="panF"
                     /locus_tag="OQQ19_002304"
     CDS             complement(14648..16099)
                     /gene="panF"
                     /locus_tag="OQQ19_002304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312157.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/pantothenate symporter"
                     /protein_id="HCS1803907.1"
                     /translation="MQLEVILPLVAYLVVVFGISVYAMRKRSTGTFLNEYFLGSRSMG
                     GIVLAMTLTATYISASSFIGGPGAAYKYGLGWVLLAMIQLPAVWLSLGILGKKFAILA
                     RRYNAVTLNDMLFARYQSRLLVWLASLSLLVAFVGAMTVQFIGGARLLETAAGIPYET
                     GLLIFGISIALYTAFGGFRASVLNDTMQGLVMLIGTVVLLIGVVHAAGGLSNAVETLQ
                     TIDPQLVTPQGADDILSPAFMTSFWVLVCFGVIGLPHTAVRCISYKDSKAVHRGIIIG
                     TIVVAILMFGMHLAGALGRAVIPDLTVPDLVIPTLMVKVLPPFAAGIFLAAPMAAIMS
                     TINAQLLQSSATIIKDLYLNIRPDQMQNETRLKRMSAVITLVLGALLLLAAWKPPEMI
                     IWLNLLAFGGLEAVFLWPLVLGLYWERANAKGALSAMIVGGVLYAVLATLNIQYLGFH
                     PIVPSLLLSLLAFLVGNRFGTSVPQATVLTTDK"
     gene            complement(16089..16331)
                     /locus_tag="OQQ19_002305"
     CDS             complement(16089..16331)
                     /locus_tag="OQQ19_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhdT family protein"
                     /protein_id="HCS1803908.1"
                     /translation="MDTRFVQAHKEARWALGLTLLYLAVWLAAAYLPDVAPGFTGFPR
                     WFEMACILTPLLFIGLCWAMVKFIYRDIPLEDDDAA"
     gene            complement(16424..17359)
                     /locus_tag="OQQ19_002306"
     CDS             complement(16424..17359)
                     /locus_tag="OQQ19_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001446002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS1803909.1"
                     /translation="MGELLAEFLSRNPHQKFTQPGEFIGPFPSGAPAIFAAQVAKLSH
                     RAIFFGCVGNDDFGRLIIERLRHEGVITDGIHVMNNAVTGTAFVSYQNPQQRDFVFNI
                     PNSACGLFTAEHIDKDLLKQCNHLHIVGSSLFSFRMIDVMRKAITTIKSAGGTVSFDP
                     NIRKEMLSIPEMAQALDYLIEYTDIFIPSESELPFFARHKNLSEEQIVSDLLHGGVKH
                     VAIKRAQRGASYYKLKNGTLHAQHVTGHDIEIIDPTGAGDCFGATFITLFLSGFPAHK
                     ALQYANASGALAVMRQGPMEGISSLADIEDFLQQH"
     gene            complement(17391..18221)
                     /locus_tag="OQQ19_002307"
     CDS             complement(17391..18221)
                     /locus_tag="OQQ19_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000843961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1803910.1"
                     /translation="MKSVNVPRKSSNLLKRRLKIAEIVAAQGEIKVDDLSAQLGVSGV
                     TIRGDLSYLEQQGYLKRSFGGAIATPLSSEPEAIQPIAPLSLAQQMEIARHCARLIRD
                     RDTLFLGHGTICRKIIPLLSEVKKLRLITNDPEHALLANQFIDGEIILAGSEMLRPDT
                     ALAGKPLEQALQHFTITHSILEINHLDADGTLNINVPRLAAAWQLCFDHAQNKTVIVA
                     ADPAPSTAAIGHLHQAENVIVSRSINEQYQQQLQSADFVILYTSNECFTWSNRERLQE
                     "
     gene            18564..19418
                     /locus_tag="OQQ19_002308"
     CDS             18564..19418
                     /locus_tag="OQQ19_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000275530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose bisphosphate family class II aldolase"
                     /protein_id="HCS1803911.1"
                     /translation="MYIISSKNMLKKAQSEGYAVPAFNIHNLETLQVVVESAAQLRSP
                     VMLAGTPGTYRYGGVGSLISLVQSLAREYNLPLVLHLDHHEESDDIFNKVRAGIRSVM
                     IDGSHLPFEDNIARVQEVTTFCHRFDVSVEAELGRLGGQEDDLLVDEKDSAYTSPAAA
                     AEFVQRTQIDSLAVAIGTAHGLYAHEPRLDFVRLEQIRQRVEIPLVLHGASGLSEQDV
                     QHCIRRGICKVNVATELKIAFADALKGYFYNNPAANDPRHYMQPAKAAMKEVVTRIIG
                     VCGSEGKI"
     gene            19454..>19637
                     /locus_tag="OQQ19_002309"
     CDS             19454..>19637
                     /locus_tag="OQQ19_002309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1803912.1"
                     /translation="MKNIKLLGSAMLVSLALFSQNSLAKEYKIGASLLTQQHPFYIDL
                     ANAMKEEAKKDNVNLSV"
BASE COUNT         5222 a         4916 c         4684 g         4815 t
ORIGIN      
        1 agcgtgctga tatggctcag ttggtagagc gcacccttgg taagggtgag gtccccagtt
       61 cgactctggg tatcagcacc actttttagg ttaaagttcg gcaaattaga aaagaatttg
      121 tctggcggca gtagcgcggt ggtcccacct gaccccatgc cgaactcaga agtgaaacgc
      181 cgtagcgccg atggtagtgt ggggtcttcc catgcgagag tagggaactg ccagacatca
      241 aataaaacaa aaggcccagt cttccgactg agccttttgt tttatctgtt gtttgtcggt
      301 gaacactctc tcgagtagga caaatccgcc gggagcggat ttgaacgttg cgaagcaacg
      361 gcccggaggg tggcgggcag gacgcccgcc ataaactgcc agacatcaaa tcaagcaaaa
      421 aggccatccg aaaggatggc ctttttgctt ttcgaactaa cattcaatta atggattacc
      481 tgcgataaaa atgccctcgt acgctctgat ttaggatgcg taaaaaattc atcaggtgca
      541 gcttgttcca ctatctcccc acgatccata aaaattaccc ggtcagcgac ggtacgtgca
      601 aaccccatct catgtgttac acacaacatt gtcatacccg actgcgccag cccaatcatc
      661 gtatccagca cctctttcac catctccgga tcgagcgccg acgttggttc atcaaacaac
      721 ataattttcg gcttcataca cagcgaacgc gcaatggcaa cgcgttgctg ctgaccacct
      781 gaaatctgtc cgggaaactt atgcgcatgt tcggcaattc tcacccgctc aaggtaatgc
      841 atcgccagag cttcagcctc tttcttaggc atcttgcgta cccaaatcgg tgccagggta
      901 cagttctgta aaacggtcag atgagggaag agattgaaat gctgaaatac cattcccact
      961 tcttgcctga cgcgctcaat attgcggata tcttcattaa gttcgatgcc atctacgaca
     1021 atccgtccct gttgatgttc ttccagatga ttaatacaac gaatggttgt cgatttaccg
     1081 gaaccagaag ggccacacag aacgatccgt tctcccggtt gcacggttaa atttatattt
     1141 ttcaaaacat ggaattgtcc ataccattta tggacgtttt ccagcgtaat catcgcgtta
     1201 gcaggttgca gtaaaatttg gctcatagtg tcctcaatgc ggtgtacgcc cggtgttaaa
     1261 acgttttttc agatgttggc tataacgtga catgctgaaa caaaagatcc agtagatcag
     1321 cgcggcgaaa acataccctt ccgtcgacat acccaaccag gcgggatcaa cggttgcctg
     1381 ctgaacgcta ctgaaaagat cgaacaagcc gatgatgatc accaggctgg tatctttgaa
     1441 gagtgcgatg atggtattta ccagcccagg aattaccagc ttcaacgcct gtggcagaat
     1501 aaccagcccc tgagttttcc agtaccccaa cgccagcgac tctgccgctt catattgccc
     1561 tttaggtagg gcctgtaatc cgcctcgcac gacttccgca acatatgctg actgaaacag
     1621 gatcacgcca accagcgcgc ggatcagttt gtcgatactg gtgccttctg ccataaacaa
     1681 cggcagcatg accgaagaca taaacaatac ggtaatcagc ggtacgccgc gccagaactc
     1741 gataaaaatg accgataaga tacgcacaat cggcatatgg gagcggcgac ctaacgccag
     1801 taagatcccc cacggtagcg cccccgcaat cccaacggat gcaataatta aagttagcgt
     1861 cagcccgccc cattgccggg tttcaacccg ctcaagacca aaaaaaccgc catacatcag
     1921 ccaccagaca atcagtgggt aaatcaccgc ccagaccgca atatagcgac cgcgatgcgg
     1981 gagtattttc cagaacattg gtgcgattga cacaaggcca atcagtaata ccaggttaat
     2041 tcgccagcgt tggtcgtgtg ggtaaagtcc atacataaac tgaccaaatc gttcgtggat
     2101 gaagacccaa caggcaccgg cttttgtgca gtcggcacgc gttgagccaa cccagttagc
     2161 ctgcaaaaat gcccagttca gcaacggtgg gatcagttcc cacatcaacc atatgcagcc
     2221 aatagtcagc aggctattgc tccagctgga gaacagattt tttcgcaccc acaccatcgc
     2281 gcggcttgag ttatggctcg ctgggcgcga gggctgagac agcaatactt ttgtcatcat
     2341 gactccttag cgttcaacga tcgcgatgcg gcggttatag atattcatca gcagcgagat
     2401 agtcaggctg ataatcagat agaccgacat ggtcatggct atcgtctcga tggcttgccc
     2461 cgtctggttc agcacggtgc cagcaaacag cgaaaccata tcgggatagc caatagcggc
     2521 ggcaagagag gagtttttga cgatgttgag atactggctg gttaacggcg gaataatcac
     2581 tcgcagtgcc tggggaataa tgacctggcg tagcgtaacc ccagtgaccg agccgcttca
     2641 tgttgaccat aaggcactgc ctggatccca gcgcggataa tctcggcgat aaatgcagag
     2701 gtataaaccg aaagtgccag cgttaaggct gccagttcag gaattaaaac cattccgccg
     2761 cggaagttaa agcctcgtag ggctgggaca tcccagtgta gtgctgcgcc aaaaagccat
     2821 tgcgccagta aaggcaaacc gatgatcaac actgcggcga acggccaggt gcggcgcagt
     2881 tgtccggtct ttatctggta tgttttatta aagcggaata gcccaacaga aaggactata
     2941 gccataacaa cagccaggat aaacgcaata aatccgtctc ccagctgcgg tgacggaata
     3001 taaagcccac gattgctcaa aaaggccaga tcaaacgcgc tcacagcctg gcgcgtggtc
     3061 cgggcaaatt gcgcaacacg gcaaagtacc agaagaagat ttgcagcagc gggggaatat
     3121 tacggaagat ctcaatataa attgtggata gctttcgtag cagtcagtta tccgaaagtc
     3181 tcgtcagacc gataaagaag cctaaaacag aagcgaacac aatacacaat gcagaaacca
     3241 gtagcgtatt gagtaagccg acaataaaaa cgcgtccgta ggtgtcgccc tgctggtaat
     3301 cgatcaaatg ctggacaata ccgaagccag cgccgcgatc cagaaaggca aaacctgaag
     3361 taatgccacg attactgaga ttcgttacag tgttgtgaaa taaccaacca acaattccga
     3421 caacagcaac aacggcaagg atctggaata accaggcacg aaccgtaggg ttggcaaagg
     3481 agagtgagcc tttaacggtt gagcggcgat gagacataga aacctcggaa agcataacgc
     3541 tgaagagagc gccgccgtag cgacgctcgt tacctcacac cgacttaacg cacgggcggc
     3601 gcgtactgaa taccgccgtt attccagaga ttattttgcc cacgtttaat tttcagcggg
     3661 ctttctgaac ctacgttacg ctcgaaaatt tccgagtagt tacccacctg tttgatgatg
     3721 ttataggccc atttattatc caacttcaga tccttgccgt aatcgccttc tttacccagc
     3781 agatgtgcca tatcaggcgt tgctggatta gccgcttttt catcgacgtt ctgggaattg
     3841 atgcccatct cttcagcatt cagcatggcg aaaagcgtcc agcgtacaat cgagaaccat
     3901 tcatcatcgc cacgacgaac taccggccca agcggttctt tagagataac ctccggtaag
     3961 acaatccatt cagctgggtt gcttaatttg atgcgcaggg catacagttg cgactgatcc
     4021 gaggccagcg tatcgcagcg accagattcc agtgccttcg ctgattcgtc agagcgatcg
     4081 aaagtcaccg gtgtgtactt catattgttt gccttgaaat agtcggcaac gttgagttcg
     4141 gtatcagtac ccgcctgaat acagacggta gcgccatcca gttctttcgc gctttttagc
     4201 cccgctttat cgtgcgtcag gaagccaatg ccgtcgtaat aagtgacgcc agtaaatgcc
     4261 attcccatcc cggcgtcgcg agatgaagtc caggtcgtat tacgggagag caaatccact
     4321 tcccctgact gtaaagccgt gaagcgttct tttgctgtga gtggggtata tttcactttc
     4381 gtgtcgtcac caaatacagc agcggcaaca ctacgacaaa catcaacatc aacatcaaca
     4441 tcaacatcaa catcaacatc aacatcaaca tcaacatcaa catcaatacc tgaaaactta
     4501 ccgtctgcat cggcataaga gaacccaagt aatccatcac tgatcccgca ttgcacaaaa
     4561 ccttttttct gaacggcatc aagcgtcgcg ccagcatgcg cctgatttgc aacggcaagc
     4621 agcacgctgg cggcagccag tgtggctatc atcatctttt tcataatgct tcctgtgagg
     4681 cgaaaattat cgttatagga cgtttgggaa acgtctttta cctgtctgtg gccatcctct
     4741 tataagcaaa agtagtgcca gcttttgcgc acgatttcgc gtcgcaataa gctgagtgta
     4801 gacaggaaat aataaaaaca gcgccccgca atggtgcgaa aatgaaacat gcgccacatt
     4861 ttggcgcaaa atatttacgc gtgttttact aagcagaata atgattgtta gcgtgagtat
     4921 atttctggtg ggaagtgtga aagttaaatt gatgcgttat ttcgaaagca gcgaaataac
     4981 gcgatataac atgctaaatc agcagagaat tagccagcag aatatagcaa tattttatct
     5041 tatgtaaaga tactgtatcg ttaaacagag cgcgaaactc cgcgccctgt tcagttattt
     5101 cgacagagcg atgatcccca tcgtcaggcc agcaacagcc gctgccccgc cggcaatagc
     5161 cccagccgtt tcccagttat cctgagtcgt gcctttcata caggtattgg tgtgaaccag
     5221 acaaccctga tcgtcataaa ccggaacgca gggcgaatcg tgagcacagc ccgccagcaa
     5281 tgcggtgagc aatgccacag gaattaatct tttcatggtg ttacctcagt aataaacgct
     5341 aacgcttaat aagttaactc tcttattaac gagctgaatg ccattttatc accggaggtt
     5401 ataaatattg cggaatgaat aatgacaaat tatgtgaatt gtaaaaatag tgaagggagc
     5461 gggaactata gaaagttttt aaagagtgag tggaagaata tcttattaat ttttatgggt
     5521 ttcactgaaa ataataaagg cacccgaaag tgcctttatg tttctgattt atcctttaaa
     5581 gcaacggcgg atcaccacaa agaacaccgg taggaagaag attgccagca acgttgcaga
     5641 gaccattccg cccattaccc cgatacccac tgcgttctgc gcgccactgc ctgcaccgtt
     5701 actgatagct agcggtaata cgccgagaat aaaggcgaga gaggtcatca ggataggacg
     5761 cagacgcata cgtactgcca ttagtgtcgc ttcaacaaca cctttaccct ctttctccat
     5821 gagatcttta gcgaactcaa caatcaaaat agcgtttttg gccgacaagc caattgtcgt
     5881 tagcaagccc accataaagt agacgtcatt tttttgatta aagagtgtcg ccgccagcag
     5941 cacgccgaca atccctaacg gcacgaccaa cataaccgag acaggaattg accagctttc
     6001 atagagtgca gcaaggcaca ggaaaacaac cacaaaggaa attgctacta gagcgggagc
     6061 ctggtttccc gataagcgtt cctgatacga catacccgtc cagtcataac caatgcccgc
     6121 aggtaatttt gacgcaaggt tttccatcaa cgccatggca tcgccggaac tggttcctgg
     6181 cgcggcttcc ccctgaatct ccattgacgg cagaccgttg tagcgttcca gtcgcggaga
     6241 gccatacacc caatgtgaag tggtaaaggc cgagaatggc accatttcgc cgttggcgct
     6301 gcggacataa agtttatcga catcttctgg cagcatacgg aatttggcat ccgcctgaac
     6361 atacaccttt ttcacgcgac cacggtcgat gaagtcgtta acgtaagtcc cacccaacgc
     6421 cgttgaaatg gtctgattga tgtcagaaag tgaaacactt aatgcctgcg ccttttcctg
     6481 gtcaacttcc agtttaaact gcgcggtgtc ttccaggcca ttaggacgca cgctgactaa
     6541 gctggcagga tgttgcgccg ccataccaag caactggtta cgggcctggg ttagggcatc
     6601 gtgacccagc ccagcctgat caattaactc aaagtcgaaa cccgttgccg tgcccagttc
     6661 aacaatggct ggcatattga atggaatgac aaaaccgtcg cggatcttgc ccaattccat
     6721 tttggcacga tggattaccg cttccgcact gttttcatca ccattacgct cttcccacgg
     6781 tttcagactg acgaaggcca taccggcgtt ttgtgcctgg ccgctgaagc taaagccgtt
     6841 aaccgtaaag acactttcaa cgttcgcttt ctcgttcttc agatagtaat ccgtcacttg
     6901 atccaacact ttttgcgtcc gctcttgcgt cgcgccagcg ggcaactgaa tcatggtcag
     6961 aaagacaccc tgatcctctt caggtaagaa ggaagacgga agacgtaaaa acaacaccac
     7021 cattcctgca acaatcagcg catagatcag taaatatcgt cctgtggaac cgaggatttt
     7081 gccgacgctg ttggtgtagt ggttaacgct atgatcgaag gtggtattaa accagccgaa
     7141 gaaaccgccc ttattttcgt gatgctcagc agagacgggt ttaagcagcg ttgcacataa
     7201 cgcaggggta agaatcaatg ccaccagaac agaaagtgcc attgccgaaa cgatggtgat
     7261 agagaactgg cgataaattg ccccagtaga accgccgaag aatgccatcg gaataaatac
     7321 cgctgacagc accatcgcga tacccaccag tgcgccctga atttgcgaca tcgatttttc
     7381 cgtcgcttct tttggcggga gcttatcctc catcatcacg cgctcgacgt tctccaccac
     7441 cactatcgca tcatcgacga gcagcccgat ggcaagcacc atcccgaaca tcgttagtgt
     7501 gttgatggag taaccaaaag cggcgaggat ggcaaacgtc cctaacaaca ccacgggtac
     7561 cgcaatggtg gggatcagcg ttgctcgcat attctgcaag aacagataca tcaccaggaa
     7621 caccagcata atggcttcga acagcgtttt taccacttcg tgaatagaaa gctggacgaa
     7681 tggcgtggtg tcataagggt agagaacctt cattccctgc gggaagaatg gctgtaattc
     7741 cgccagtttt gccttaatgg ctttcgcggt atcgagagca ttcgcgccgg ttgccagctt
     7801 aatccccagg cccgccgccg gttttccgtt gatacgagcg ataacgttat agttttcacc
     7861 gccaagttca acccgtgcga catctttcag gcgtaccacc gagccgtcac tgtttacgcg
     7921 cagggtcact ttgccgaatt cttccggatt ttttaaccgc gtttgagcaa taatcgaggc
     7981 attcaactgt tgccctggta acgctggcgt tccgcccaac tgtccggcag cgatctgatc
     8041 gttctgtacc ttcaactggt taatcacatc aaccggtgtc agtttatatt tgtttagcag
     8101 atcggcgtcc agccagatac gcatcgcata ctgtgcgccg aaaagctgta cgtcaccgac
     8161 gccattcaga cggctaagcg tatctttaac gttagaggcc acatagtccg agatatcgtc
     8221 ctgtgtggtg cctgggttat cagagacaaa acccgccacc atcaaatagc tgctactgga
     8281 cttttcaaca ctgatcccct gctgctgaac ctcctgcggc agcaacggcg tggcgagctg
     8341 gagtttgttc tgcacctgca cttgcgcgat atcaggatcg gtcccggact ggaaggtaag
     8401 ggtaattgtc acgctaccgg cggaatcgtt ggtggaggac atatacatca ggttatcgat
     8461 accattcata ttctgttcga taacctgcgt caccgtatcc tgcacggtct gcgcatcagc
     8521 acctggatag tttgccgaaa cagaaaccgc aggcggtgca atggttggat actgagcgac
     8581 gggcaattgt aggatcgcca gtgcgcccgc catcatcaga ataatggcca gcacccatgc
     8641 aaatatcggt cgtcgaataa aaaagtttgc catgtcagat taccttactt cgatgcagta
     8701 tctgcggggg tatcggtagt ggctttaacc tgctctcccg gacgcgcttt ttgcaggccg
     8761 ctgacaatga cttgatcgcc agatttcaga ccttcgctaa tcaaccattt atcgccaatc
     8821 gcctgactgg caacgacagg gcgcgcttcc acctgacttt tatcgttaac aatcagcacg
     8881 gttgcatcac cacgcggtgt gcggctaacg ccttgttgcg ggataagaat ggcgtcaggt
     8941 tggacgcctt catcaatccg tgcacgcaca tacatacccg gcaaaagcgt atgttgcggg
     9001 ttagggaaga cagcacgtag ggttatggag ccggtgcttt catcaacggt cacatcagag
     9061 aattgcagcg tacctttcag gggataggtt tgaccgtttt ccatgaccaa ctctacgttg
     9121 ctggtggcgt tttccttatg caaatttcct tgctctacgg attgcttcag cctcataaaa
     9181 tcgttgctgg attgggtcac atcaacgtag ataggatcga gctgctggac agtcgccagt
     9241 tcagtcgttt gcccattagt gacaagagcg ccttcggtca cggtcgattt gccgatacgt
     9301 ccgctaattg gcgcagtcac tttggtataa gcgagattga tgcgagcgct ttcgactgtg
     9361 ccttttgcgg caatcacggc ggcatcggcc tggcgagcat cagcaatggc ctggtcgtac
     9421 tcctgctggc tgatgtattt cgtacccacg agcggaacgt aacgttttac cgtcaaatgc
     9481 gcgatggcgg cggcggcttc acttttcgcc agttcgcctt tcgcgctgtt ataatttgcc
     9541 tgataggtcg cgggatcgat ctggtacagg gactggcctg cttgtacatc gctgccttca
     9601 gtgaaattac gattcagtac gatcccgcta acctgtgggc gaacttcggc tatacggtaa
     9661 gcattggtgc ggcctggtaa ttcagtctta acttctaacg gggccgtttt cacaatatga
     9721 acggtaacct gcggttcacc gacgtgagct ttctcttctc ccttatcgtt acaaccggcg
     9781 attaaagccg cggagatcag aataaaggag ggcaggagga aaaacctggc atgtttcgtc
     9841 attactattc ctcaaaaaac caaaagcgcg ttatttaccc agaaaggcaa cgcgttaact
     9901 cgcagaaaga aaaatacagt ttgctatcct acaaattatc attcgtcgat gtaaggaata
     9961 gttatgaata ctggcgtctc aaggcacata aacacaaaaa aagattaata ttctactgtt
    10021 ttattttgac gcgggttgaa agaggcagaa ttaaaacctc gtaaattgaa atatatattc
    10081 atgtggcgaa tgtattttag gtaaataata tacattgttt atttgacgat ttatagcaac
    10141 tcaatgttac cctctcgtat aaatacacat tagatgatag attaaccttc gctattttct
    10201 caccctgtgt cgaatatatt tatttcctga ataattaatc atggcaaaaa gaaccaaagc
    10261 cgaagctctg aagacccggc aagaactgat tgaaactgcc atcgcccagt ttgcgcagca
    10321 tggcgtaagc aagacgacgc tcaacgacat tgccgacgcc gctaacgtta cgcgtggcgc
    10381 tatctactgg cacttcgaaa acaagactca actgtttaat gagatgtggt tgcaacagcc
    10441 ttcattgcgg gagttaatcc aggaacactt gacggctgga ttagagcatg acccgtttca
    10501 acaattgcgt gaaaaattga ttgtcggctt gcaatatatt gccaaaattc cccgccagca
    10561 ggcgttgctg aaaatcttat atcacaaatg tgaatttaat gatgagatgc tggccgaggg
    10621 agtgatacgc gaaaagatgg gctttaatcc gcagactctc cgcgaagtat tgcaggcgtg
    10681 tcagcaacaa ggttgtgtag caaataacct cgatttagat gttgtgatga ttattattaa
    10741 tggtgccttc agcggaattg ttcaaaactg gttaatgaat atggcgggtt atgatcttta
    10801 taaacaagca cccgcgctgg tcgataacgt attaagaatg ttcatgccag atgaaaacat
    10861 aacgaaatta attcatcaaa cgaatgaatt aagtgtcatg taaattcaca ttctgtcctg
    10921 aaaattcagt tcgtcacagt taaccagttt tagtggatta actgagttca tattacggca
    10981 tttgtctgtt tctgttgtca gcagttcaat ccactgcatc agtaaagtat caaacagaaa
    11041 aacgaagaca gcgaaaacga cgagccacca atacttgcga atcattacct gagcctgtgc
    11101 atgtttaacc aagtctggca ggaaatatac acgaaatgaa taatctgaaa accaggctta
    11161 cacttccttt actttgcaat gagatcgggg tcaacttcgc ttaaccggct tcgttttgac
    11221 aggttgccgg tctttctttt tttcactttc gccagttctt ccgcagagta atgcgacgcg
    11281 acatccagcc gtcgaagccc cattttgatg tactcgctgt tgatctcaat accaatgaat
    11341 tttcgcccgc tggagacggc tacggcaccg gtagtaaagc taccggcaaa cgggtcgaga
    11401 atgatatcgc ctgggttgga agaggcgaga ataatgcgtt tcagtaaggc ttccggtttt
    11461 tgcgtcgggt ggttctcata ttcatccatc aaataacgca cgcgcggaaa atcccagacg
    11521 ttacccggta ctttttgatg attgtatggc tgtggaggat ttttgcgata atcgatcaac
    11581 gcgcgctgcg atccggtttt ggcttctacc agaatagcat caccgttgaa tgtgtagttc
    11641 tttgcgtctt tcaccatcat caggatgggg tcgtacatgg agccgtagtg ttttttcgcc
    11701 tgtactccag aactgtcata tgaccagacg atgcgacttt tgatggtaaa aagcttgcgg
    11761 cactggagat cgataaaggg catgttttcc gtgctgttca tgatgtacat gctgccctgc
    11821 tttttcagaa cgcggtggca ctctgcaatc acttcaaaca gccagtcgat aaacagatct
    11881 tctttccagg cttcgatcag accatcaaaa tttttaccga tgttatatgg tgggtcggca
    11941 aagatcagat cgacactttc ggcggggatc tttttaagtt cggcaagcgc atcaccgtga
    12001 ataatggtct tagcttcatt accaaaccgg gtcggttcac atcctgttct catggtcact
    12061 ccctttgtga cacctataaa aaaggcgctt ccccatgccg agtagcgcct ttttaatcaa
    12121 gcatttagct aacctgaatt agttcatgcc gtattttttc aattttttac gcagcgtacc
    12181 acggttgatg cccatcatca gcgcagcacg ggtctggtta ccacgggtgt attgcatcac
    12241 catgtccaac aggggctgtt ctacttcagc cagtaccagc tcatagaggt cattcacatc
    12301 ctgaccattc agttgagcaa aatagttctt cagtgcctgt ttaaccgagt cacgcagggg
    12361 tttttgggtt acctgatcct gagagttaac ggtagaaacg gtcagtacgt cagaatttac
    12421 gcgttgttcg aacatagttc tgtcagctct ttatttctgt ttacgcaaaa ttttcgaagt
    12481 atgcctccaa cgcctccagc tgttcgctgg catcctcaat ggcgttgaat gtgcgccgaa
    12541 actggtcatt tggagcgtgt tcctggagat accaggaaac gtgtttacgt gcaattcggt
    12601 acccttttgc cggaccataa aagtcatgca gttcccgaac gtgcgcgcaa agcaagcgct
    12661 taacctctgc caaaggcagt gggggcagca actccccagt gtccagataa tgctggattt
    12721 cccgaaagat ccagggtctt ccctgagctg cgcggcctat catcagggca tccgcccctg
    12781 tatagtcgag cacagctctg gctttaagcg ggtcagtaat gtcgccattc gcgataaccg
    12841 gaatggaaac tttctgctta actgcccgaa tactgtcgta ctcagcttct ccattgaaca
    12901 aacaggcgcg tgtacggcca tgaatggtca gagcctgaat gccacagtct tcagccagtt
    12961 gggcaatctc ttcgcagtta cggtgttccg gtgcccagcc agtgcgaatc ttcagggtaa
    13021 caggaacgtc cactgcattg acgacctcgg taaggatcga tttaacgaca tccgggtact
    13081 gcaagagggc tgaacctgcg agcttgcgat tcactttttt agccgggcaa cccatattga
    13141 tatcaataat ctgggcaccg ctttccacgt taatacgtgc tgcatctgcc atttctttcg
    13201 gatcgctacc agcaatttgc acggtgcgaa taccgggttc atcaatgtgc accatccgta
    13261 aacgagattt gtcgctttcc caaacctgtg ggttagaaga catcatctcg gatactgtca
    13321 atccggctcc catctcgtag cacaacgtcc gaaaaggtct gtctgtaatg ccagccatgg
    13381 gcgctgcgat caggcgattt ctgagctgat attgtccgat gcgcatgagt taagaaatga
    13441 ccatactgtg actgcaaggc ggcgtatatt acgcattttt tgcacgagat gaaaggccaa
    13501 actttgacca atcctctgag atggatcaaa gaattgcatt taaaatgagc gtggtgcgat
    13561 aattactcat aaaaatcatc atattagaaa atagtgacta aaatttacat tcaaagaaat
    13621 ttgagtaagt tctcaatttt tctttatgaa tgaaaatttt ggcacgcaaa tttgcgtaaa
    13681 taaccggcaa atttacgtgc cttttgtgag cttgctcgca cttcgccccg cgtcacccta
    13741 cggcgatgcg aaggttaatt cttacgaccg gtaatacggc accactcttc tttttccacg
    13801 accgggtcca gtgcgaagct atcggcataa gcttcacaaa cgctctctgc ctggcttgcc
    13861 agaataccgg aaaggcccag caaaccgcct gaaaccggca ggacgctgat taacggtgcc
    13921 agttcacgta atgggcctgc aaggatgttc gcgaccacca cgtcggcttt catttcttct
    13981 ggctgatctt tcggtaagta gagttccaga cggtcagaaa cgccattacg ttcggcgttg
    14041 tcgcggctag cctgaatcgc ctgcggatcg atatcaatac caatggcttt tgctgcaccc
    14101 agtttcagcg ccgcgatagc cagaatgccg gaaccgcagc caaagtcgat gactgtttta
    14161 ccagttaaat cgaggctgtc gagccattgt aggcacagag aggtagttgg atgggtaccc
    14221 gtaccaaacg ccagccctgg gtctaacatc acgttgacgg cgttttcgtc cggcacatca
    14281 cgccagcttg ggcagatcca cagtcgttca ccaaagcgca tcgggtggaa attatccatc
    14341 cattcgcgct cccagtcttt atcttccagt tgttcgattt tatgcgcgaa gcctgcgccg
    14401 agcagcggat ggttttccag aatcgccacc acgtcgttca tatcggtttc agcgtcgaac
    14461 agaccaatca catcggtgtc gccccacagg cgcgtttcgc ccggcagcgg ctcaaatact
    14521 ggcgtatcgt gggtatcctg aaaagtgata gaaacggcac ccgcttccat cagcgcatcg
    14581 ctaagatctt cagcgttcgc gccggtggtg ttcagtttca gttggatcca aggcatggca
    14641 aaactcttta tttatcagta gtcaaaacgg tagcttgcgg gacggatgta ccgaaacggt
    14701 ttccgaccag gaaagccagc aaacttagta gtaacgaggg cacgataggg tggaagccca
    14761 ggtactgaat attcagcgtc gcgagtacgg catacagcac gccgccaacg atcatcgcac
    14821 ttagcgcgcc tttggcgttg gcgcgttccc agtaaagacc cagcaccagc ggccacagga
    14881 aaacggcttc caacccaccg aaggccagca aattcagcca gatgatcatt tctggcggct
    14941 tccaggcggc aagcagcagc aacgcgccga gaactaacgt aattaccgcc gacatccgct
    15001 tcagacgcgt ctcgttttgc atttgatccg gacggatatt cagatagaga tctttaatga
    15061 tcgtagcgga actttgtagc aattgggcgt taattgtcga catgatcgca gccataggtg
    15121 cagccagaaa gatcccggca gcaaacggtg gcagcacttt taccattaac gtcgggatca
    15181 ccagatccgg tacggtgaga tcggggatca ctgcacgacc taacgctccg gccaggtgca
    15241 taccgaacat caggattgcg actacaatcg taccgatgat gatcccccgg tgtaccgctt
    15301 tgctgtcttt ataagagata cagcgcaccg cagtatgcgg caggccaatc acgccaaagc
    15361 acaccagtac ccagaacgac gtcataaagg caggcgacag aatatcgtca gcgccttgtg
    15421 gcgtaaccag ttgcggatcg atggtttgca gcgtctctac cgcattactt aaaccacctg
    15481 cggcatgtac cacgccaata agcagcacaa cggtgccaat cagcatcaca agcccttgca
    15541 tggtgtcgtt cagcacgctg gcgcgaaagc cgccaaaggc ggtatacaac gcaatgctga
    15601 taccgaaaat cagcagcccg gtttcataag gaatacccgc cgcggtttcc agcaggcgcg
    15661 caccgccgat aaactgcacg gtcattgccc caacgaacgc aaccagcaaa ctcaaactcg
    15721 ccagccacac cagaagacga ctctggtagc gggcaaacag catgtcgttc agcgtcactg
    15781 cattgtagcg gcgcgcaaga atcgcgaact tcttgccgag aataccgagc gaaagccaga
    15841 ctgcaggaag ctgaatcatc gccagcaata cccaacccag gccgtattta taagcagctc
    15901 caggcccgcc gataaacgaa cttgcactga tataggtcgc ggtgagcgtc atcgccagca
    15961 caataccgcc catagagcgg ctgccgagga aatactcatt aaggaaggta ccggtgctcc
    16021 gtttacgcat cgcataaaca gagataccga acaccaccac cagataggcg accagcggta
    16081 gaatcacttc aagctgcatc gtcatcctcc agtgggatat cgcgatagat aaatttcacc
    16141 atcgcccagc acagtccaat aaacagcagc ggcgtcagga tgcaggccat ctcaaaccag
    16201 cgcggaaagc cggtaaaacc gggggcaacg tcaggtaagt aagcggctgc taaccaaact
    16261 gccagataca aaagggtcag ccccagcgcc cagcgcgcct ctttatgggc ctgaacaaaa
    16321 cgagtgtcca cggaagggtt cctcctcatg gggggatacg agaaacgggc aattctacgg
    16381 caactcttca ggcagggaaa ataatctgac agaaaattgc cgttcagtgc tgctgcaaaa
    16441 agtcttcaat gtcagccagt gaggatatcc cttccatcgg accttgccgc attacggcga
    16501 gcgcgccgct ggcatttgca tattgcagtg ccttatgtgc cgggaaaccg gataagaaaa
    16561 gagtgataaa cgttgcgcca aagcagtcgc ctgcacccgt tggatcgata atttcgatat
    16621 cgtggcctgt aacatgctgg gcgtgtaatg taccgttttt aagcttgtaa tagctggccc
    16681 cacgctgggc gcgttttatc gccacatgtt ttacgccgcc gtggagaaga tcgctaacaa
    16741 tctgttcttc tgacagattt ttgtgacgcg cgaagaaagg gagttcgctt tcgctgggga
    16801 tgaaaatatc cgtatattca atcaaataat cgagagcctg cgccatttca ggaatgctca
    16861 gcatctcttt gcgaatattg ggatcgaaag aaacggtgcc gccagccgat ttgatcgtcg
    16921 ttattgcttt acgcatgaca tcgatcatgc gaaatgagaa caatgatgag cccacaatat
    16981 ggagatggtt acactgtttt agcagatcct tatcaatgtg ctcagcagta aacaagccgc
    17041 aggcgctgtt agggatatta aagacgaaat cgcgctgctg gggattttga taactcacga
    17101 acgccgtacc tgtgacggca ttgttcataa catggatccc atcggtaatg acaccttcat
    17161 gacggaggcg ctctataatg agtcggccaa aatcatcatt accaacacat ccgaagaaga
    17221 tggcccgatg ggacagtttt gccacctgag cagcaaaaat tgctggcgca ccgctgggaa
    17281 atggcccgat aaactcccca ggctgagtga atttttgatg tgggttgcgg gacaaaaact
    17341 cggccagcaa ttcgcccata gcgcagatag ttattgtcac aaaacccctc tcattcctga
    17401 agcctttcgc gattggacca ggtaaagcac tcattactgg tataaaggat aacgaaatca
    17461 gccgactgca attgttgctg atattgttcg ttaatgctgc ggctgacgat cacattttct
    17521 gcctgatgca aatgcccgat agcagccgtt gatggcgcag gatcggcggc aacgataacc
    17581 gtcttattct gggcatgatc gaaacagagc tgccaggcag cggccagtct gggaacgttg
    17641 atatttaaag taccatcagc atccagatgg ttgatttcca gaatgctatg tgtaatggtg
    17701 aaatgctgaa gtgcctgttc aagcggtttt ccggccagtg cggtgtcggg gcgcagcatt
    17761 tcactgccag ccagtattat ttcgccatca ataaactgat ttgccagcag cgcatgttcg
    17821 ggatcgttgg tgatcagacg cagttttttc acttcgctga gcaatggaat gatcttacgg
    17881 cagattgtcc catgtccaag aaatagcgtg tcacgatcgc gaattaaccg tgcgcaatgt
    17941 cgtgctattt ccatttgttg tgccagagac aatggcgcga tcggttgtat cgcttctggt
    18001 tcagaggaga gtggtgtcgc aatagcaccg ccaaatgatc gctttaaata tccctgttgc
    18061 tccagataac tgagatcgcc gcggatcgtc acgccagaga caccaagttg cgcagataag
    18121 tcatcaactt tgatttcacc ttgggcggca acaatttctg caatttttaa tctgcgtttc
    18181 agtaggttag acgattttct cggcacgtta acactcttca ttggccttta atgcgtaaca
    18241 ctatagcccc ttgtattttt ctttgaaagt tatccttcaa taatatcgac aattcgaaaa
    18301 gaaaatcatg ggtcaaaaat cgcaacaaaa atagattaat tcattgaaaa ataaatgaat
    18361 ttattcatat ttatgcagag atgttattgg tttcacttgt aaagtgaaaa acaaattaag
    18421 ttattttttt gtaagttatt ttgatgatat tcgacatgta tcacgctttt tgccgctttt
    18481 gctgtgctag tttgctttca aaatgaaagt gaatattctc tttcttcatt ttgtaaggcg
    18541 aacgacaaat aacaggagct gcgatgtaca tcatttcaag caaaaacatg ctgaaaaaag
    18601 cccagtcaga gggatatgcc gtccccgctt tcaacattca taaccttgaa actttacagg
    18661 tagttgttga gagcgctgca caacttcgct ctcccgttat gctggcggga acacccggta
    18721 cttatcgtta tggtggcgtg ggaagtttaa tttcgttagt acaatcgctg gctcgcgagt
    18781 acaacctgcc gttagtcctg catctcgacc atcatgaaga gagtgatgac atttttaaca
    18841 aggttcgcgc agggatccgt tctgtcatga ttgatggctc ccatttgcca tttgaagaca
    18901 acattgcgcg agtgcaagaa gttaccacct tttgccatcg ctttgatgtt agcgttgagg
    18961 ccgagctagg gcgtcttggc ggccaggagg acgatctgct ggtggatgaa aaagattccg
    19021 cttatacctc accagccgca gctgcagagt ttgttcaacg tacccaaatt gactccctgg
    19081 ccgtagcaat cggcacagca catggtttat atgcgcatga accacgactg gattttgtgc
    19141 ggctggaaca gattcgtcag cgagtggaga ttccactggt gttgcatggt gcttcgggct
    19201 tatcagaaca ggacgttcag cactgtattc gccgcggtat ttgtaaagtg aatgtcgcga
    19261 cagaattgaa aattgcgttt gccgatgcgt taaaaggata tttctacaac aatcctgcgg
    19321 caaatgatcc acgccactat atgcagcccg caaaggccgc catgaaagaa gtcgtaactc
    19381 gtattattgg tgtctgtggt agtgaaggaa aaatttaaga cgttgtaccc tacaaaaaca
    19441 atgaggattg tttatgaaaa atattaaatt acttggttca gctatgttgg tgagcctggc
    19501 attgttctcg caaaattcgt tggcaaaaga gtataaaatt ggtgcgtcat tattaacaca
    19561 gcaacatcct ttctatattg atcttgcgaa tgccatgaaa gaagaggcaa aaaaagacaa
    19621 tgtcaattta agtgtct
//
LOCUS       DAJVSY010000074        19367 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.074, whole genome shotgun sequence.
ACCESSION   DAJVSY010000074 DAJVSY010000000
VERSION     DAJVSY010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19367
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.074"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(31..1860)
                     /gene="glmS"
                     /locus_tag="OQQ19_002310"
     CDS             complement(31..1860)
                     /gene="glmS"
                     /locus_tag="OQQ19_002310"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HCS1803913.1"
                     /translation="MCGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMT
                     RLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEANAHPHVSEHIMVVHNGII
                     ENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTV
                     IMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRR
                     SVNIFDKTGAEVKRQDIESNLQYDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQ
                     VDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYR
                     KSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMT
                     NAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLS
                     QDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPL
                     ALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMP
                     HVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE"
     gene            complement(2022..3392)
                     /gene="glmU"
                     /locus_tag="OQQ19_002311"
     CDS             complement(2022..3392)
                     /gene="glmU"
                     /locus_tag="OQQ19_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HCS1803914.1"
                     /translation="MLNNAMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAAN
                     ELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILML
                     YGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATD
                     EQRQIQEINTGILISNGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQ
                     RLSEVEGVNNRLQLSRLERVYQSEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDT
                     NVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDVNLAAACTIGPFARLRP
                     GAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANK
                     FKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQKEGWR
                     RPVKKK"
     gene            complement(3743..4162)
                     /gene="atpC"
                     /locus_tag="OQQ19_002312"
     CDS             complement(3743..4162)
                     /gene="atpC"
                     /locus_tag="OQQ19_002312"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001251972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HCS1803915.1"
                     /translation="MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLT
                     AIKPGMIRIVKQHGHEEFIYLSGGILEVQSGNVTVLADTAIRGQDLDEARAMEAKRKA
                     EEHISSSHGDVDYAQASAELAKAIAQLRVIELTKKAM"
     gene            complement(4183..5565)
                     /gene="atpD"
                     /locus_tag="OQQ19_002313"
     CDS             complement(4183..5565)
                     /gene="atpD"
                     /locus_tag="OQQ19_002313"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017800291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HCS1803916.1"
                     /translation="MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQ
                     QQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEI
                     GEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNM
                     MELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRL
                     RVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM
                     GVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPA
                     VDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVA
                     RARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSI
                     EEAVEKAKKL"
     gene            complement(5592..6455)
                     /gene="atpG"
                     /locus_tag="OQQ19_002314"
     CDS             complement(5592..6455)
                     /gene="atpG"
                     /locus_tag="OQQ19_002314"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HCS1803917.1"
                     /translation="MAGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRP
                     YAETMRKVIGHLAHGNLEYKHLYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAE
                     MKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAY
                     DEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYLYEPDPKALLDT
                     LLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQE
                     LTEIVSGAAAV"
     gene            complement(6506..8047)
                     /gene="atpA"
                     /locus_tag="OQQ19_002315"
     CDS             complement(6506..8047)
                     /gene="atpA"
                     /locus_tag="OQQ19_002315"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001176751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HCS1803918.1"
                     /translation="MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGL
                     ADCMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRG
                     LLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIG
                     RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGAL
                     ANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLL
                     LRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLSGG
                     IRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFA
                     AERGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFK
                     ATQSW"
     gene            complement(8060..8593)
                     /gene="atpH"
                     /locus_tag="OQQ19_002316"
     CDS             complement(8060..8593)
                     /gene="atpH"
                     /locus_tag="OQQ19_002316"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HCS1803919.1"
                     /translation="MSEFITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQM
                     AELLSGALAPETLAESFIAVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAV
                     SEATAEVDVISAAALSEQQLAKISAAMEKRLSRKVKLNCKIDKSVMAGVIIRAGDMVI
                     DGSVRGRLERLADVLQS"
     gene            complement(8608..9078)
                     /gene="atpF"
                     /locus_tag="OQQ19_002317"
     CDS             complement(8608..9078)
                     /gene="atpF"
                     /locus_tag="OQQ19_002317"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001052215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HCS1803920.1"
                     /translation="MNLNATILGQAIAFVLFVLFCMKYVWPPLMAAIEKRQKEIADGL
                     ASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIV
                     AQAQAEIEAERKRAREELRKQVAILAVAGAEKIIERSVDEAANSDIVDKLVAEL"
     gene            complement(9140..9379)
                     /gene="atpE"
                     /locus_tag="OQQ19_002318"
     CDS             complement(9140..9379)
                     /gene="atpE"
                     /locus_tag="OQQ19_002318"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004246596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HCS1803921.1"
                     /translation="MENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPD
                     LIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAVA"
     gene            complement(9426..10241)
                     /gene="atpB"
                     /locus_tag="OQQ19_002319"
     CDS             complement(9426..10241)
                     /gene="atpB"
                     /locus_tag="OQQ19_002319"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HCS1803922.1"
                     /translation="MASENMTPQDYIGHHLNNLQLDLRTFSLVDPQNPPATFWTINID
                     SMFFSVVLGLLFLVLFRSVAKKATSGVPGKFQTAIELVIGFVNGSVKDMYHGKSKLIA
                     PLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFIL
                     ILFYSIKMKGIGGFTKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAG
                     ELIFILIAGLLPWWSQWILNVPWAIFHILIITLQAFIFMVLTIVYLSMASEEH"
     gene            complement(10250..10630)
                     /gene="atpI"
                     /locus_tag="OQQ19_002320"
     CDS             complement(10250..10630)
                     /gene="atpI"
                     /locus_tag="OQQ19_002320"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418195.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit I"
                     /protein_id="HCS1803923.1"
                     /translation="MSVSLVSRNVARKLLLVQLLVVIASGLLFSLKDPFWGVSAISGG
                     LAVFLPNVLFMIFAWRHQAHTPAKGRVAWTFAFGEAFKVLAMLVLLVVALAVLKAVFL
                     PLIVTWVLVLVVQILAPAVINNKG"
     gene            complement(11247..11870)
                     /gene="rsmG"
                     /locus_tag="OQQ19_002321"
     CDS             complement(11247..11870)
                     /gene="rsmG"
                     /locus_tag="OQQ19_002321"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HCS1803924.1"
                     /translation="MLNKLSLLLKDAGISLTDHQKNQLIAYVNMLHKWNKAYNLTSVR
                     DPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV
                     RFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASLNDMVSWCHHLPGEQGR
                     FYALKGQMPEDEIALLPEEYQVESVVKLQVPALDGERHLVVIKANKI"
     gene            complement(11934..13823)
                     /gene="mnmG"
                     /locus_tag="OQQ19_002322"
     CDS             complement(11934..13823)
                     /gene="mnmG"
                     /locus_tag="OQQ19_002322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000499793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HCS1803925.1"
                     /translation="MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQ
                     MSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRV
                     LYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD
                     GKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQ
                     HGDNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRY
                     CPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENA
                     KIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAA
                     RLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTE
                     IGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREAS
                     GEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNE
                     NTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGM
                     LRRSA"
     gene            complement(14202..14645)
                     /gene="mioC"
                     /locus_tag="OQQ19_002323"
     CDS             complement(14202..14645)
                     /gene="mioC"
                     /locus_tag="OQQ19_002323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein MioC"
                     /protein_id="HCS1803926.1"
                     /translation="MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPLLEDL
                     SASGIWLIISSTHGAGDIPDNLSPFYEALQEQKPDLSAVHFGAIGIGSREYDTFCGAI
                     DKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWINLLK"
     gene            complement(14735..15193)
                     /gene="asnC"
                     /locus_tag="OQQ19_002324"
     CDS             complement(14735..15193)
                     /gene="asnC"
                     /locus_tag="OQQ19_002324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator AsnC"
                     /protein_id="HCS1803927.1"
                     /translation="MENYLIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVE
                     KMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTT
                     GHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQHPIMRTIKP"
     gene            15345..16337
                     /gene="asnA"
                     /locus_tag="OQQ19_002325"
     CDS             15345..16337
                     /gene="asnA"
                     /locus_tag="OQQ19_002325"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HCS1803928.1"
                     /translation="MKTAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGT
                     QDNLSGCEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPD
                     EDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPF
                     LPDQIHFVHSQELLSRYLDLDAKGRERAIAKDLGAVFLVGIGGKLSDGHRHDVRAPDY
                     DDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIRVDADTLKHQLALTGDEDRLQL
                     EWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQCGVWPAAVRESVPSLL"
     gene            complement(16342..17793)
                     /gene="viaA"
                     /locus_tag="OQQ19_002326"
     CDS             complement(16342..17793)
                     /gene="viaA"
                     /locus_tag="OQQ19_002326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase RavA stimulator ViaA"
                     /protein_id="HCS1803929.1"
                     /translation="MLTQDTLNVMLAVSEEGLIEEMIIALLASPQLAVFFEKFPRLKA
                     AITDDVPRWREALRSRLKDARVPPELTEEVMCYQQSQLLSTPQFIVQLPQILDLLHRL
                     NSPWAEQARQLVDANSTITSALHTLFLQRWRLSLIVQATTLNQQLLEEEREQLLSEVQ
                     ERMTLSGQLEPILADNNTAAGRLWDMSAGQLKRGDYQLIVKYGEFLNEQPELKRLAEQ
                     LGRSREAKSIPRNDAQMETFRTMVREPATVPEQVDGLQQSDDILRLLPPELATLGITE
                     LEYEFYRRLVEKQLLTYRLHGESWREKVIERPVVHKDYDEQPRGPFIVCVDTSGSMGG
                     FNEQCAKAFCLALMRIALAENRRCYIMLSSTEIVRYELSGPQGIEQAIRFLSQQFRGG
                     TDLASCFRAIMERLQSREWFDADAVVISDFIAQRLPDDVTSKVKELQRVHQHRFHAVA
                     MSAHGKPGIMRIFDHIWRFDTGMRSRLLRRWRR"
     gene            complement(17787..19283)
                     /gene="ravA"
                     /locus_tag="OQQ19_002327"
     CDS             complement(17787..19283)
                     /gene="ravA"
                     /locus_tag="OQQ19_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418202.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase RavA"
                     /protein_id="HCS1803930.1"
                     /translation="MAHPHLLAERISRLSSSLEKGLYERSHAIRLCLLAALSGESVFL
                     LGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTS
                     GYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEA
                     DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKE
                     IGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVD
                     LILLKDCLWYDAQSLNLIQQQIDVLMTGHAWQQQGMLTRLGAIVQRHLQLQQQQSDKT
                     ALTVIRLGGIFSRRQQYQLPVNVTASTLTLLLQKPLKLHDMEVVHISFERSALEQWLS
                     KGGEIRGKLNGIGFAQKLNLEVDSTQHLVVRDVSLQGSTLALPGSSAEGLPGEIKQQL
                     EELESDWRKQHALFSEQQKCLFIPGDWLGRIEASLQDVGAQIRQAQQC"
BASE COUNT         4627 a         5117 c         4850 g         4773 t
ORIGIN      
        1 tcggcagccc ttttttatct atgatagtga ttactcaacc gtaaccgatt ttgccaagtt
       61 acgcggctgg tcaacgtcgg tgcctttgat cagcgcgaca tggtaagcca gcagctgcag
      121 cggaacggtg tagaagatcg gtgcaatcac ctcttccaca tgcggcatct cgatgatgtg
      181 catgttatcg ctacttacaa aacccgcatc ctgatcggcg aagacataca actgaccgcc
      241 acgcgcgcga acttcttcaa tgttggattt cagtttttcc aacagttcgt tgttcggtgc
      301 aacgacgata accggcatat ccgcgtcaat cagcgccagc gggccgtgtt tcagctcgcc
      361 agcagcgtag gcttcagcgt gaatgtagga gatctctttc agcttcaatg cgccttccag
      421 tgcgattggg tactgatcgc cacggcccag gaacagtgcg tgatgtttgt cagagaaatc
      481 ttctgccaga gcttcaatgc gtttgtcctg agatagcatc tgctcaatac ggctcggcag
      541 cgcctgcaga ccatgcacaa tgtcatgttc aatggaggca tccagacctt tcaggcgaga
      601 cagcttcgcc accagcatca acagcacagt taactgagtg gtgaatgctt tagtggacgc
      661 cacgccgatt tccgtacccg cgttggtcat cagcgccaga tcggattcgc gcaccagaga
      721 agaacccgga acgttacaga ttgccagcga accaaggtaa cccagctctt tcgacagacg
      781 caggcccgcc agggtatccg cggtttcgcc agactgtgac aaggtgatca tcaggctgtt
      841 acgacgcacg gcagatttac gatagcggaa ttcagaggcg atttcgacgt cgcacggaat
      901 acctgccagc gattcaaacc agtagcggga aaccataccg gagttataag aagtaccaca
      961 ggcgaggatc tgaatatgct caaccttcga cagcagttcg tcggcgttcg gtcccagctc
     1021 gcttaaatca acctgaccgt ggctgatgcg cccagtaagg gtgtttttga tcgcgttcgg
     1081 ctgttcgtag atctctttct gcatgtagtg acggtaaata cctttatcgc ccgcgtcata
     1141 ttgcagattg gattcgatat cctgacgttt tacttccgcg ccagttttat cgaagatgtt
     1201 taccgaacgg cgagtaattt ccgcaatatc gccctcttca aggaagataa agcgacgggt
     1261 caccggcagc agcgccagct ggtcagaagc gataaagttt tcgcccatac ccaggccaat
     1321 caccagcgga ctaccagaac gtgccgccag cagggtatcc gggtgacggg agtccatgat
     1381 cactgtaccg tacgcaccgc gcagctgcgg gatagcacgc agaacagcct cacgcagagt
     1441 cccgccttgt tttagctccc agttcaccag atgggcaatc acttcggtgt cggtttcaga
     1501 aacgaaggta tagccacgcg cttttaactc ttcacgcagc ggttcatggt tttcgatgat
     1561 gccgttatgc accaccataa tgtgttcaga aacatgcgga tgcgcgttag cttctgaagg
     1621 ttcaccgtgg gtcgcccagc gagtgtgagc aataccggtg ccgccatgca gaggatgttc
     1681 ttccgctgcc tgagccagca tctggacttt accgaggcga cgcaggcggg tcatatgacc
     1741 ttccgcatca acaacggcca gaccagcaga gtcatatccg cggtattcca gacgacgtaa
     1801 accttcaaga aggatttctg ctacatcacg ttgcgcgatc gcgccaacaa ttccacacat
     1861 agtttttgat tccgatttat atcgttgtcg gtcaacctgt atgcccgttt tttcgggcgc
     1921 cccgagcctt gtagagagtg gggttatttt tatagttact tcttgtggga gggagattat
     1981 gttatctcct catcccagat gaccggatta cccggccaga attacttttt ctttaccgga
     2041 cgacgccagc cttctttctg agtctgcggc acacggctga tagctaatgc attttcgccg
     2101 acattacgcg tcacagttgt acccgcagca atggtcgcgc ctttgcctac tgttaccggg
     2161 gccaccagct gagtgtcgga accgacaaac acatcgtcgc cgataatggt cttaaattta
     2221 ttcgcaccat cgtagttgca ggtaatggtt cccgcgccga tgttaacgtt atcgccaatt
     2281 tccgcatcgc ccaggtaagt cagatgacca gctttcgagc ctttacccag acgcgctttt
     2341 ttcatctcaa caaagttacc gacgtgtgca ccttccagca actcagcacc aggacgcaga
     2401 cgggcaaacg ggccaatagt acaggccgct gccagattca cgtcttccac aacggtatac
     2461 ggactgattt cgcaatcatc gccaatcacg ctgtttttaa tcacgcaacc ggtgccgatt
     2521 ttcacgcgat gaccgagagt cacgttgccc tcgatgataa cgttagtatc aatttcaaca
     2581 tcgcgcccgt gagtaagcgt accgcgcaga tcaaaacgcg ccggatcgcg cagcataacg
     2641 cctgctaaca gcagtttttc agcctgttcg gactggtaaa cgcgctccag acgggagagt
     2701 tgcaggcggt tattcacacc ttctacttcg cttaaacgtt gcggatgaac ggcgacgatt
     2761 tcacgccctt cctgatacgc cagcgcaata atgtcggtga tgtagtattc gccctgagca
     2821 ttattgttgg tcagcttcgc cagccagcgt ttcatatctg cgccgttaga gatcagaatg
     2881 ccggtgttga tctcctgaat ctgacgctgc tcgtcggtgg catctttgtg ctcaacaatg
     2941 ccggtaactt tgccattttc acgggtgata cgtccataac cggtcggatc atccagtttc
     3001 accgtcagca gaccaatgcc accctgcggt ttagcatcac gcaggcgctg gagtgtttcg
     3061 acagagatca gcggcacgtc gccgtagagc attaaaatgt cttcatcatc ggcaaagaaa
     3121 ggtgcggcct gctgcattgc atgacccgta cccagctgct ctgcctgaag cacccagtta
     3181 aggttgtcgt ctttcagcgc ctgtttaagc agatcgccgc cgtgaccgta caccaggtga
     3241 acgtgcgctg cgcctaattc attcgcagca tcaatgacat gctgaaccat cgctttcccg
     3301 gcaagggtat gcagcacttt cggaagatcg gaatacatgc gcgtgccttt gcctgcggca
     3361 aggatcacta cgctcatagc attattcaac atacgcgtcc tgactgtaat ttgagaacga
     3421 atttaaaccg cttcaccttg aaaaaactac atttttttca tcgtgaaatg gacagaggat
     3481 aaattgttca ataacggatt atccccgctg acgaaagtgc cattttcgac catcgtcacg
     3541 ccttttgtct gcagaaaatt aaggcagtac cttcatttaa gcgtcaggtg gatgtttttg
     3601 ctcttatttc gatcaatgaa taaacgggaa aacaggggtg ttttatatca gcaggatcta
     3661 tgtgaacgct cttcaggacg gatcacgcgt aaaaaaaaac cagcctgttt ccagactggc
     3721 ttttgtgctt ttcaagccgg tgttacatcg cttttttggt caactcgata acgcgcagct
     3781 gcgcgatcgc tttggccagt tccgcagacg cctgagcgta atctacgtcg ccgtgagagc
     3841 tgctaatgtg ctcttcagcc ttacgtttcg cttccatggc tcgcgcttcg tcgagatcct
     3901 ggccgcgaat tgcggtgtcg gccagaacgg tcacgttgcc agactgcact tcaagaatgc
     3961 cgccagacag atagataaac tcttcgtgac cgtgctgttt cacgatgcga atcataccag
     4021 gcttaatggc ggtgagcagc ggtgcgtggc cagggtagat ccccagttca ccttcgctac
     4081 ccgttacctg gattttctcg accagaccag agaacatttg ttgctctgcg ctgacgacgt
     4141 ccaggtggta agtcattgcc atatcaccct ccgattaagg cgttaaagtt ttttggcttt
     4201 ttccacagct tcttcgatgg aaccgaccat gtagaacgcc tgctccggca ggtgatcgta
     4261 ttcgccttcc atgatgcctt taaagccacg gatggtgtct ttcagggaga cgtatttacc
     4321 cggagaaccg gtgaatactt ctgccacgaa gaacggctgg gacaggaagc gctggatctt
     4381 acgagcacgc gctaccacca gtttgtcttc ttcagacagt tcatccatac ccaggatggc
     4441 gatgatgtct ttcagttcct gataacgttg caggatggac tgaacgccac gcgcggtgtc
     4501 gtagtgttcc tgaccaacca ccagcgggtc cagctgacgg ctggtggagt ccagcgggtc
     4561 aacggccggg tagataccca gagacgcgat ctgacggctc agtaccacgg ttgcgtcaag
     4621 gtgcgcaaag gtggttgccg gagacgggtc agtcaagtca tccgcaggta cgtataccgc
     4681 ctgtacggag gtgatagaac cagttttggt ggaggtgata cgttcctgca gaacgcccat
     4741 ctcttccgcc agggtcggct gataacctac cgctgaaggc atacggccca gcagtgcgga
     4801 tacttccgta ccggccaggg tgtaacgata gatgttgtca acgaacagca gaacgtcacg
     4861 accttcgtca cggaatttct cagccatggt cagaccggtc agagcaacgc gcagacggtt
     4921 tcccggcggc tcgttcatct ggccatacac cagggatact ttgtcgataa cgttggagtc
     4981 ggtcatttcg tggtagaagt cgttaccctc acgagtacgt tcacctacgc ccgcaaacac
     5041 agagtaaccg gagtgctcga tcgcgatgtt acgaatgagc tccatcatgt ttacggtttt
     5101 acctacaccc gcaccaccga acagaccaac tttaccgccc ttagcgaacg gacacatcag
     5161 gtcgataact ttgataccgg tttccagcag ttcctgagag tttgacagct cttcgtagga
     5221 aggtgctgcg cggtgaatcg cccaacgctc ttcttcaccg atctcgcctt tcatgtcgac
     5281 cggttcaccc agtacgttca tgatacggcc cagagtcgct ttacctaccg ggacttcgat
     5341 cgggtgttcg aggtctttta catccagacc gcgacgcaga ccgtcggagg aacccattgc
     5401 gatggtacgc acgataccgc cgccgagctg ctgctgaact tccagcacca gacgctcatt
     5461 accattttgc acctcaagag catcgtacac gcgcggtacg gcatcctgag ggaattcgac
     5521 gtcaactacg gcgccgatta cctggacaat ctttccagta gccatcttaa atcctctacg
     5581 aaataacctg tttaaaccgc ggcggccccc gagacgatct cggtgagttc ctgagtaatg
     5641 ctggcctgac gagctttgtt gtataccaac tgcagctctt taatcaggct gccgccattg
     5701 tcggtcgcgg ctttcatcgc caccatacgg gcggcctgct cgctggccag gttttcaacc
     5761 acgccctgat aaacctgaga ttcgacataa cgacgcagca gggtatccag caacgccttc
     5821 ggatcgggtt cgtacaggta atcccaggat ttatgtttca gatcatcatc atctgatgcc
     5881 ggtaacggca gcagctggct gatggtcgga acctgagaca tggtgttaat aaatttgttg
     5941 ctgacaatgt aaagcttgtc cagacggcct tcgtcgtagg cctgcaacat cacttttacc
     6001 ggaccgatca gttcggacag ggaagggtta tcccccatgc cggtgacctg ggcaacaaca
     6061 ttgccgccca cggagttgaa gaacgacacg cctttcgagc cgatcattgc gaggtcgcat
     6121 tgaacgcctt tgtcggtcca ggtcttcatt tccgccagca gttttttgaa caggttaatg
     6181 ttcaaaccac cgcacaaacc acggtcggtc gacaccacca ggtagcccac gcgtttaacg
     6241 tcgcggtctt ccaggtaaag gtgcttatat tccagattac catgtgcaag gtgaccaatc
     6301 actttgcgca tggtttctgc ataaggacgg ctggccgcca tgcgatcctg cgatttacgc
     6361 attttggaag cggcgaccat ctccatcgct ttagtgatct tttgcgtgtt ctggacgctt
     6421 gcgatcttac tacgtatctc ttttgcgccg gccatgagct tctcctcaat gccttgcggc
     6481 ctgccctaag gcaagccgcc agacgttacc aggattgggt tgctttgaag gaatcgagga
     6541 tgcctttcag tttgccttcg atttcgtcgt tgtagccacc ggtctggttg atctcttgca
     6601 tcaacggagc gtgatcacgg tcgacgtaag ccagcagagc ggcttcgaag ctgccaattt
     6661 tcgacagttc aacatccgcc aggtaaccac gttctgctgc gaacagaacc agagactgct
     6721 gcgcaacgga catcggcgca tactgtttct gtttcagcag ttcggtcact ttctgaccgt
     6781 ggtcaagctg cttacgtgtt gcatcgtcaa ggtcggatgc aaactgagag aacgctgcca
     6841 gttcacgata ctgtgccaga gcggtacgga taccaccgga cagttttttc atgatcttgg
     6901 tctgtgctgc accaccaaca cgggatacgg aaatacccgg gttaaccgca ggacgaatac
     6961 cggcgttgaa caggttggtt tccaggaaga tctgaccatc ggtaatggag attacgttgg
     7021 tcggaacgaa cgcagaaacg tcacccgcct gagtttcgat aatcggcagt gcggtcagag
     7081 aaccggtttt ccctttcact tcacctttgg tgaaggcttc aacgtattcg gcgttaacac
     7141 gtgcagcacg ctccagcaga cgagagtgga ggtagaaaac gtcgcccggg aatgcttcac
     7201 gtcctggcgg acgacggagc agcagggaga tctgacggta agcaacagcc tgtttagaca
     7261 ggtcatcgta aatgatcagc gcatcttcac cgcggtcacg gaagtattcg cccattgcgc
     7321 aaccggcata cggtgccagg tattgcagtg cagcggattc agacgcggtt gctaccacaa
     7381 cgatggtgtt agccagtgcg ccgtgctctt ccagtttacg taccacgtta gaaatggtgg
     7441 acgctttctg gccgatagcg acatagatac atttgatacc ggaatcgcgc tggttgatga
     7501 tggcatcgat agccagtgcg gttttacctg tctgacggtc accgatgatc aattcacgct
     7561 gaccacgacc gattgggatc atggagtcaa cggctttata accggtctgt accggctgat
     7621 ctacggactg acgttcgata acgcccggag cgattgcttc tacagcagag aagccgtcgt
     7681 gatccagcgg acctttaccg tcgattggtg cacccagagt gttaaccaca cggcccagca
     7741 ggccacggcc aaccggaact tccaggatac ggccagtaca cttaactttc atgccttcgg
     7801 caaggtcagc gtacggaccc ataacaaccg cacctacaga gtcgcgctcg aggttcagtg
     7861 cgatagcgta acggttaccc ggcagggaga tcatttcacc ctgcatacaa tcggccaggc
     7921 cgtgaatgcg gataacaccg tcacttacag aaacaatagt accttcgttg tgagcttcac
     7981 tcacaacatt gaactgagca atgcgctgct tgatcagttc gctgatttcg gtggaattca
     8041 gttgcatgct ccagtcccct taagactgca agacgtctgc aaggcgctca agacgaccgc
     8101 gtacgctgcc atcaatgacc atatcacccg ctcggatgat aacgcctgcc attacagact
     8161 tatcgatttt gcaattcagc ttaactttgc gtgacagacg tttttccatc gcagcagaaa
     8221 ttttcgcgag ctgttgttca ctcagtgcgg cagcggaaat gacgtctacc tcagcggtag
     8281 cctcactcac ggcacgaagg tgaataaact gctccagaac atccgggagc gcgttaagac
     8341 gaccattttc agccattacc cgaatcaggt tctgaccgtt ttcgtccagt tgctcaccac
     8401 aaactgcgat aaacgactcg gcgagcgttt ctggcgcaag cgcgccagag agaagctctg
     8461 ccatttgttc gtttttggtt acctcggcgg caaacgccag catgtcctgc cagcgttcta
     8521 cactttggtg ttcgacggca aagtcaaaag ctgctttggc gtaggggcga gctaccgtaa
     8581 taaattcaga catcagcccc tccctcctta cagttcagcg acaagtttat ccacgatgtc
     8641 gctgttagca gcttcatcca cggaacgttc gatgatcttc tcggcgccag caacagccag
     8701 gatagcaact tgcttacgca gctcttcacg ggcacgttta cgctcggctt caatttctgc
     8761 ctgcgcctgg gccacgattt tagtacgttc ctgttctgcc tcagctttcg cttcgtccag
     8821 aatctgcgag cggcgtttgt tcgcctgctc gatgattacc tgggcttccg ctttcgcttt
     8881 tttcagctgg tcggtcgcgc tggcctttgc aaggtcaagg tccttatgtg ctcgttctgc
     8941 ggaagcaagg ccgtcagcaa tttctttttg acgtttttcg atggctgcca ttaatggcgg
     9001 ccatacgtac ttcatgcaga acagaacgaa caggacaaac gcgatggcct ggccgaggat
     9061 tgttgcgtta agattcacag cacaatgcct ctatttagtt aacgttctga tattgctctt
     9121 taaataaaag caacgcttac tacgcgacag cgaacatcac gtacagaccc agacctacag
     9181 cgatcatcgg gatagcatcc accagaccca taacgataaa gaactgagta cgcagcagag
     9241 gaatcagatc aggttgacgc gctgcgcctt ccaagaattt acccccgagg atgccgatac
     9301 cgatcgcagc accgattgcc gccagaccca tcatcacagc ggcagccatg tacagcagat
     9361 ccatattcag gttttccatg acagtctcca gtttgtttca gttaaaacgt agtagtgttg
     9421 gtaaattaat gttcttcaga cgccatcgac agatagacga tcgtcagaac catgaagatg
     9481 aaggcttgca gcgtaatgat caggatgtgg aaaatggccc acggcacatt caggatccac
     9541 tgtgaccacc acggcaacag accagcaatc agaatgaaaa tcagctcacc ggcatacatg
     9601 ttaccgaaca gtcgcaaacc gagtgaaact ggtttggaca gcaggcttac cccttcaagg
     9661 attaagttga caggaatgaa cgcccagtga ttgaacggct gcagcgtcaa ctctttcgtg
     9721 aagccgccga tgcctttcat tttgatgctg tagaacagaa tcaggataaa tacgcccaat
     9781 gccatagaca gcgttacgtt cacgtccgca gacggaacca cacgcagtgc aggcagaccc
     9841 agtacatgtt cagcaatgta cggcagcagg tcgataggca gtaaatccat caggttcatc
     9901 aggaataccc agacgaagat cgtcagggcc agcggagcaa tcagcttgct tttgccatgg
     9961 tacatgtctt tcacgctacc attaacaaag ccgatcacca gctcaatcgc ggtctgaaac
    10021 ttacctggca caccgctggt cgcctttttg gctacgctac ggaataaaac caggaacaac
    10081 agacccagca ccaccgagaa gaacatggag tcaatattga ttgtccagaa ggtggctggg
    10141 gggttttgtg gatccaccag cgagaatgta cgcaggtcca gctgaaggtt attcaggtgg
    10201 tgtcctatgt aatcctgcgg cgtcatattt tctgaagcca tgatgccttt taccctttgt
    10261 tgttaattac agccggtgcc agtatctgaa ccaccagcac caaaacccac gtaacgatca
    10321 gcggcaagaa taccgccttt aaaaccgcca acgccaccac cagtaacacc aacatcgcca
    10381 gaactttgaa agcttcgcca aatgcgaatg tccaggccac ccggcctttc gctggtgtat
    10441 gcgcctggtg acgccaagca aatatcataa acaaaacgtt aggcagaaag actgccaggc
    10501 ccccgcttat tgcagagacg ccccagaagg ggtctttgag gctgaacagc aatccacttg
    10561 ctatcaccac cagtaactga acgagcagaa gcttccgagc aacgtttcga ctcacgagcg
    10621 acacagacat cacgtttttt actcctgctc ccttcgaggt atgccgcgtg tcgtataaaa
    10681 ctttctttaa ggcttagagt caagcatcaa aaagcggtca aattatacgg cgcgcccccg
    10741 tgatttcaaa caataagtag ccaaaaggtg aataaatgtt taaatatttt tccagtgcat
    10801 acaattgcga cttttctact aaccctgttc gatcatgaaa aactgtaaat aacgcgtaaa
    10861 cactggtgat aaagcgtgct tcagatcaca tattgcgcat gttcgcgcac agcatattta
    10921 tttacttggc aaatgatgcc tttgcaagtt tatgatattt cagtctaaaa acagatactg
    10981 ttttaataaa tgacatttac acaacaaaaa ccacccattg acatttttaa taatgtttta
    11041 gcagccaatg atggttctta gcgccgattt ttagcagact gatattttca ctaatgactt
    11101 attttctgct taccaaaaaa agccacgtta tcttgttgat gcaaaagagt gaacgtggcg
    11161 ttaaatgtaa ccagttatat cagtagaaaa cctggttgtt gttaacagtc taaccggtca
    11221 attttttatg atttttttga taaaaattaa attttatttg ctttaatcac caccagatga
    11281 cgttcgccat ccagggctgg aacctgaagt ttaaccactg attcgacctg atattcttcg
    11341 ggcaacaaag cgatttcatc ttccggcatt tgccctttca gcgcgtagaa acggccttgc
    11401 tcaccaggaa gatggtggca ccagctcacc atatcgttca gagaggcaaa agcgcggcta
    11461 attacgccat caaatggcgg ctctgaagga aactcttcta ccctgctctg tacaggttca
    11521 atattctcca gtttaagctc atgttgcacc tgacgaagga aacgcacgcg tttaccaagg
    11581 ctatccaaca gagtgaaatg ggcttcagga cgcacgatag agagtggaat gcctggcagt
    11641 cctggtccgg tgccgacatc gataaaccgt tcaccttgca gatacggtgc caccacaatg
    11701 ctatcgagaa tatggcgtac cagcatctca ttaggatcgc ggaccgaagt caggttgtac
    11761 gctttgttcc atttatgcag catattcacg taggcaataa gctggttttt ctggtgatcg
    11821 gtaagcgaaa tacctgcgtc tttcagcagt aaggagagtt tgttgagcac ggtgattacc
    11881 tgttcttgat gcgttgcctg gtaagcgggt gcttaccagg catttttaat gcgttatgcg
    11941 ctacgacgca gcataccctg ttttttcagc cacaccagca gaatggagat agccgcaggc
    12001 gtgacgccag aaatacgcga agcttggccg atagaggctg gtttgtgatc gttaagtttg
    12061 gcgatcactt cgttagaaag accggatacc tggcggtaat ccagtgtcgc gggtagcagg
    12121 gtgttctcgt tacgcagctg cttttcgatc tcatcttgct ggcgcgcgat ataaccttcg
    12181 tatttaacct gaatctcaac ctgttccgcc gcctgttcgt ctgtcaacgc aggggcaaac
    12241 ggcgtcagcg tggttaattt ttcataagtc atttccggac gacgcagcag atcttcacca
    12301 ctggcttcac gggaaagcgg cgcagtcagg tgagcattca cttcggctgc agcttccgcc
    12361 gacggggtta cccaggtcga tttcagacgc tgacgctcac gctcgatatt ctcaagtttc
    12421 tcgttaaagc gcgcccaacg ttcgtcatcc accaggccca gttcacgacc gatttcagtc
    12481 aaacgcagat ccgcattatc ttcgcgtagc atcagacgat attctgcgcg cgaagtaaac
    12541 atacgatacg gttctttggt tcctaaagtg cacaggtcat caactagtac gccgagatac
    12601 gcctgagaac gtgccggagc ccaaccttct ttgtcagcag acagacgggc agcgttaaga
    12661 ccggccagca aaccttgcgc agcggcttct tcgtaaccgg tagtgccgtt aatctgacca
    12721 gcaaagaaca gcccctggat aaacttgctc tccagcgtcg gtttcaggtc gcgaggatcg
    12781 aagaagtcat actcaatggc ataacccgga cgcacgatct tcgcgttttc catcccctgc
    12841 atagagcgga cgatttgcat ctgcacatcg aacggcaggc tggtggagat accgttcgga
    12901 taaatttcat tagaggtcag tccttccggt tcaaggaaga tctgatgctg atttctgtcg
    12961 gcgaagcgca tgactttgtc ttcgatcgac gggcagtagc gtgggccgac accttcgatc
    13021 acccctgcat acattgggct acgatcgagg ttactgcgga tcacatcatg ggttttctcg
    13081 ttggtatgag tgatataaca cggcacctgc tggggatgct gggacgcatt gcccataaac
    13141 gagaataccg gcattgggtt atcgccatgc tgttgcgcca gcacactaaa gtcgatagtt
    13201 cgagcatcaa tacgcggtgg tgtcccggtt ttcagacgac caacgcgcag cggcagttca
    13261 cgcaaacggc gagaaagcgg aatggacggc ggatcaccag cacggccacc gctgtaatta
    13321 tccagaccga tatgaatttt accgtcgagg aacgtcccaa cggtgagcac gacggctttg
    13381 gcacggaact tcagtcccat ttgggtaaca gcaccgacca cgcgatcgtt ttcgacaata
    13441 agatcttcaa ccgcctgctg gaagatcatc aggttcggtt ggttctccag cgccgtacgt
    13501 accgcctgac ggtagagcac acgatccgcc tgagctcggg tagcgcgaac cgccggtcct
    13561 ttgcttgcgt ttagtatcct aaactggata cccgcttgat cgatcgcttt cgccatcaga
    13621 ccgccgagtg catccacttc ttttaccaga tgtcccttcc caataccgcc gatcgccggg
    13681 ttgcagctca tctgccccag agtgtcgata ttgtgtgtca aaagcagagt ctgttgaccc
    13741 atacgcgccg cggccatcgc ggcctcggtg cctgcatgac ccccgccaat gatgatgacg
    13801 tcaaaaggat ccggataaaa catggtgatt gcctcgcata acgcggtatg aaaatggatt
    13861 gaagcccggg ccgtggattc tactcaactt tgtcggcttg agaaagacct gggatcctgg
    13921 gtattaaaaa ggagatctat ttatttagag atctgttcta ttgtgatctc ttattaggat
    13981 cgcactgccc tgtggataac aaggatccgg cttttaagat caacaacctg gaaaggatca
    14041 ttaactgtga atgatcggtg atcctggacc gtataagctg ggatcagaat gaggggttat
    14101 acacaactca aaaactgaac aaccgttgtt ccttggataa ctaccggttg aaccaagctt
    14161 cctgacagag ttatccacag tagaacgcac gatctgtata cttatttgag taaattaatc
    14221 cacgatccca gccattcttc tgccggatct tccggaatgt cgtgatcaag aatgttgatc
    14281 ttcagtgttt cgcctgtctg ttttgcaccg gaatttttga gttctgcctc gagtttatcg
    14341 atagccccac aaaaggtgtc atattcacga ctaccaatac cgattgcgcc aaagtggacc
    14401 gcagaaagat cgggcttctg ttcctgcaat gcttcataga aaggagaaag gttgtccgga
    14461 atatctccgg caccgtgggt ggagctgata atcagccaga tccccgaggc agataaatct
    14521 tccaacagcg gaccgtgcag cgtttcggtg gtaaaacccg cctcttccag cttttcagcc
    14581 aggtgttctg ctacatattc ggcaccgccg agggtgctgc cgctgataag agtgatatct
    14641 gccataaacc gccaccttta ttaagagtgg cgtattgtac gctgtgaacg cgttgggatc
    14701 tacctgtgga aaagtatggg attaaaaaag ccgatcaggg cttgatagta cgcatgatcg
    14761 ggtgttgcag gacgatcaat gtctcggtgg actgaatttc atcaattgtt tggatcttgt
    14821 tgataagtac atgctggaga gcgtcgatcg aacggcacat tacttttata aagatgctgt
    14881 agtggcctgt tgtgtaatag gcttcagtga cttcatcaag gctttccagc tttgccagcg
    14941 cggaagggta gtctttggcg ctctttaata taatgccgat aaagcagcct acgtcataac
    15001 cgagctgctt cgggctgaca tcaatacgcg ccccggtaat gatccccgcc tgcttcattt
    15061 tctctacccg aacgtgaatc gtccccggac tgacgccaaa ttgtttcgcc agttcggcgt
    15121 aagcggtgcg cgcattgccc attaatgctt ccaggatgcc acggtccaga ttgtcgatca
    15181 gataattttc cataggattt tcttatgcag attgatgatt cattctattt tagccttctt
    15241 ttttaatgaa tcaaaagtgt gttaggcttt ttattgaatg attattgcat gtgtgtcggt
    15301 ttttgttgct taatcataag caacaggacg caggagtata aaaaatgaaa accgcttaca
    15361 ttgccaaaca acgccaaatt agcttcgtga aatctcactt ttctcgtcaa ctggaagaac
    15421 gtctggggct gatcgaagtc caggcaccga ttcttagccg tgtgggggat ggcacgcagg
    15481 ataacttgtc gggctgtgaa aaagcggtgc aggtaaaagt gaaagctctg cctgatgccc
    15541 agttcgaagt ggttcattca ctggcgaagt ggaaacgtca gaccttaggg caacacgact
    15601 tcagcgcggg cgaagggctg tacacgcaca tgaaagccct tcgccccgat gaagaccgtc
    15661 tttctccgtt gcactcggtc tatgtagacc agtgggactg ggaacgcgta atgggcgacg
    15721 gtgagcgtca attctcgact ctgaaaagca cggtagaggc gatctgggcg ggaattaaag
    15781 caaccgaagc tgcggttagc gaagagtttg gcctggcacc gttcctgccg gatcagatcc
    15841 acttcgtaca cagccaggag ttactgtctc gttatctgga tctcgatgcc aaagggcgtg
    15901 agcgggcgat agcgaaagat cttggcgcgg tattccttgt cgggattggc ggcaagctga
    15961 gcgatggtca tcgccacgac gtgcgcgcac cggattatga tgactggagc accccgtcag
    16021 agctgggtca tgcgggtctg aacggcgata ttctggtgtg gaaccctgta ctggaagatg
    16081 cgtttgagct ttcttccatg gggatccgcg tggatgccga cacgctgaag catcagctgg
    16141 cgctgaccgg tgatgaagat cgtctgcagc tggaatggca tcaggcgctg ctgcgcggtg
    16201 aaatgccgca gaccatcggc ggcggtatcg gccagtctcg tttgactatg ctgctgctgc
    16261 aactgccgca tatcggccag gttcagtgtg gagtatggcc agctgctgtt cgcgagagcg
    16321 tcccttctct gctgtaataa tttatcgccg ccagcgtctg agcaggcggc ttcgcatccc
    16381 ggtatcaaag cgccagatat gatcgaaaat gcgcatgatg ccgggtttgc cgtgtgccga
    16441 catcgccacg gcatgaaagc gatgctgatg tacccgctgc agctctttca ctttactcgt
    16501 cacgtcgtca ggcaaccgct gagcgataaa atcagaaatc accaccgcat cggcatcaaa
    16561 ccattccctg ctttgcaagc gttccataat ggcgcgaaaa caactggcaa gatcggtgcc
    16621 gccacgaaac tgctggctta aaaaacggat tgcttgttcg atgccttgtg ggcctgaaag
    16681 ctcataacgg acgatctcgg tggaagatag cataatatag cagcgccggt tttctgcgag
    16741 agcaatgcgc atcaaggcca ggcagaacgc tttcgcacac tgttcattaa agccgcccat
    16801 tgagccggaa gtatccacac agacaataaa cggcccgcgc ggctgttcat cgtaatcttt
    16861 atgtaccacc ggacgttcga tcactttttc acgccacgac tcaccgtgca ggcgataggt
    16921 gagcaactgt ttttccacca gccgacggta aaactcatac tccagttccg ttatccctag
    16981 tgtcgccagt tctggcggca ggagacgtaa aatatcatcg ctttgttgca gaccatcaac
    17041 ctgctcagga accgtcgccg gttcgcgcac catggtgcgg aaggtttcca tctgcgcatc
    17101 gttgcgcggt attgatttgg cttcccgaga acgccccagc tgctctgcca ggcgtttcag
    17161 ttccggctgt tcgttaagaa attcaccgta tttcacaatc aactgatagt cgccacgttt
    17221 aagctggccg gcgctcatat cccacagacg accagctgcg gtattgttat ctgcgagaat
    17281 cggttcaagt tgtccgctca gcgtcatgcg ttcctgaact tcacttaaca gttgttcgcg
    17341 ttcttcttct aatagctgtt gatttaacgt cgttgcttgc acgatcagac ttaaacgcca
    17401 gcgctggaga aaaagcgtgt gtaacgctga agttattgtg ctgttagcat caaccaactg
    17461 ccgggcttgt tctgcccatg gggaattcag acgatgcagt aagtccagga tctgtggtag
    17521 ctgcacaata aactgcggcg tggagaggag ctggctttgc tgatagcaca tcacctcttc
    17581 ggtgagttct ggcgggactc gggcatcttt cagccgactg cgcagcgcct cacgccagcg
    17641 gggaacatca tcagtgattg ctgccttcag tcgtgggaat ttttcaaaga agaccgccag
    17701 ctgcggtgag gccagcagtg cgatgatcat ctcttcgatc aatccctctt cgctgacggc
    17761 cagcatcaca ttaagcgtat cctgcgttag cattgttgtg cctggcgaat ctgtgcaccg
    17821 acatcctgta ggctggcttc aatgcgacct aaccagtcgc cagggataaa cagacatttt
    17881 tgctgttcgc tgaataaagc gtgttgctta cgccagtcgc tttcaagctc ttccagttgt
    17941 tgttttattt cacctggcag accttcagcc gatgaaccgg gaagtgccag cgtactgcct
    18001 tgtaaactta catcgcgtac aacaagatgt tgggtgctat caacttccag attcagtttc
    18061 tgggcaaagc cgataccgtt cagtttgccg cgaatttcac cacctttact cagccactgt
    18121 tccagcgcgc tacgctcaaa ggagatatga accacttcca tatcatgcag ttttaacggt
    18181 ttttgcagca gcagagtcag agtggaagca gtaacgttaa cagggagttg atactgctga
    18241 cgacggctaa aaatgccgcc cagacgaatt accgttaagg ctgttttatc gctttgttgc
    18301 tgctgaagtt gcaggtgacg ttgcacaatc gcgcctaggc gggtcaacat cccttgctgt
    18361 tgccaggcgt gaccggtcat caatacatca atttgttgtt gtatcaaatt caggctttgc
    18421 gcgtcatacc acaggcaatc tttcagcaaa atgagatcta ccggggcaac agcactgcga
    18481 ccgctaaaaa aggcgctggc ctgcaataat cggatcgctt ttttccagcg acgatccgag
    18541 acataaggcg catccggtaa tttatccagt tgctggcgca gcataaaaat cagctcaaat
    18601 acatgatcgg gcagcgtaat ttcaccaatc tctttctgcc agcgttcata ttcttcatct
    18661 gtgacctgca aggcatcagg aaccggattg tcgttttcat cctgttgact ggtcagcatg
    18721 gagcggaaat tcgctttatc ctgcacttta tctaaccaca gacgaatcag catgcggtca
    18781 tataacgctt ccagactgct gtctgcttcc ggcagctcgt tggaggccgc caccagcaga
    18841 cgcatcggga ttttttctac gtgtgcaccg ttgcggaact ggcgctcgtt aatggcggtg
    18901 agcaaggtat taagaattgc cgggcccgct ttccagatct catccagaaa gacaatttct
    18961 gcttccggca ggtaaccgct ggttaaacgt tcatagcgcc cttcatcttt tagcgcctga
    19021 atagaaaggg gaccaaaaac ttcttccggc gtggagaagc gggtcatcag atattcaaac
    19081 gcgcgggcat tctgaaaggc gaattttaag cgccgggcga tcaaactttt ggcaatacct
    19141 ggcgggccaa ggaggaacac actttcacca cttaatgccg ctaataaaca caagcggatg
    19201 gcgtggctac gttcataaag ccccttttcc aacgaactgc tcaggcggga aattctttcc
    19261 gctaataaat gagggtgagc cataatgaag tggcgtcctt tcgtcaaaag ttctgcgtaa
    19321 attgcgagta tagacgtttc ttgctggtgg ctaaaatagt ctcaaag
//
LOCUS       DAJVSY010000075        19310 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.075, whole genome shotgun sequence.
ACCESSION   DAJVSY010000075 DAJVSY010000000
VERSION     DAJVSY010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19310)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19310)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19310
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.075"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..732
                     /gene="rihB"
                     /locus_tag="OQQ19_002328"
     CDS             <1..732
                     /gene="rihB"
                     /locus_tag="OQQ19_002328"
                     /EC_number="3.2.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosylpyrimidine nucleosidase"
                     /protein_id="HCS1803931.1"
                     /translation="IMRKQIVADNIHGETGLDGPVFESLTRQAESTHAVKYIIDTLMA
                     SDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGNFTPSAEFNIFADPE
                     AARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFEN
                     YGLAGGPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTK
                     VGITIDTDWFWGLVEECVRGYIKTH"
     gene            832..2082
                     /locus_tag="OQQ19_002329"
     CDS             832..2082
                     /locus_tag="OQQ19_002329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HCS1803932.1"
                     /translation="MDVMRSVLGMVVLLTIAFLLSVNKKKISLRTVGAALVLQVVIGG
                     IMLWLPAGRWVAEKVAFGVHKVMAYSDAGSAFIFGSLVGPKMDTLFDGAGFIFGFRVL
                     PAIIFVTALVSILYYIGVMGILIRILGGIFQKALNISKIESFVAVTTIFLGQNEIPAI
                     VKPFIDHLNRNELFTAICSGMASIAGSTMIGYAALGVPVEYLLAASLMAIPGGILFAR
                     LLSPATESSQVSFNNLSFTETPPKSIIEAAATGAMTGLKIAAGVATVVMAFVAIIALI
                     NGIIGGVGGWFGFAHASLESILGYLLAPLAWVMGVDWSDANLAGSLIGQKLAINEFVA
                     YLNFSPYLQTGGTLDAKTVAIISFALCGFANFGSIGVVVGAFSAVAPHRVPEIAQLGL
                     RALAAATLSNLMSATIAGFFIGLA"
     gene            complement(2138..3226)
                     /locus_tag="OQQ19_002330"
     CDS             complement(2138..3226)
                     /locus_tag="OQQ19_002330"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS1803933.1"
                     /translation="MNNREKEILAILRRNPLIQQNEIADMLQISRSRVAAHIMDLMRK
                     GRIKGKGYILTEQEYCVVVGTINMDIRGIADIRYPQAASHPGTIHCSAGGVGRNIAHN
                     LALLGRDVHLLSVIGDDFYGEMLLEETRRAGVNVSGCVRLHGQSTSTYLAIANRDDQT
                     VLAINDTHLLEQLTPQLLNGSRDLLRHAGVVLADCNLTAEALEWVFTLADEIPVFVDT
                     VSEFKAGKIKHWLAHIHTLKPTLPELEILWGQAITSDADRNAAVNALHQQGVQQLFVY
                     LPDESVYCSEKDGEQFLLTAPAHTTVDSFGAGDGFMAGLVYSFLEGYSFRDSARFAVA
                     CAAISRASGSLNNPTLSADNALSLVPMV"
     gene            complement(3229..4086)
                     /gene="nfo"
                     /locus_tag="OQQ19_002331"
     CDS             complement(3229..4086)
                     /gene="nfo"
                     /locus_tag="OQQ19_002331"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HCS1803934.1"
                     /translation="MKYIGAHVSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPL
                     TTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLG
                     LSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEH
                     LAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARIVGFKYLRGMHLN
                     DAKSTFGSRVDRHHSLGEGNIGHDAFRWIMQDDRFDGIPLILETINPDIWAEEIAWLK
                     AQQTEKAVA"
     gene            complement(4160..5209)
                     /locus_tag="OQQ19_002332"
     CDS             complement(4160..5209)
                     /locus_tag="OQQ19_002332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HCS1803935.1"
                     /translation="MTNITLQKQHRTLWHFIPGLALSAVITGVALWGGSIPAVAGAGF
                     SALTLAILLGMVLGNTIYPHIWKSCDGGVLFAKQYLLRLGIILYGFRLTFSQIADVGI
                     SGIIIDVLTLSSTFLLACFLGQKVFGLDKHTSWLIGAGSSICGAAAVLATEPVVKAEA
                     SKVTVAVATVVIFGTVAIFLYPAIYPLMSQWFSPETFGIYIGSTVHEVAQVVAAGHAI
                     SPDAENAAVISKMLRVMMLAPFLILLAARVKQLSGANSGEKSKITIPWFAILFIVVAI
                     FNSFHLLPQSVVNMLVTLDTFLLAMAMAALGLTTHVSALKKAGAKPLLMALVLFAWLI
                     VGGGAINYVIQSVIA"
     gene            5309..6190
                     /locus_tag="OQQ19_002333"
     CDS             5309..6190
                     /locus_tag="OQQ19_002333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1803936.1"
                     /translation="MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQ
                     LGVQLFDRVGKRLVVNEHGRLLYPRALALLEQAVEIEQLFREDNGAIRIYASSTIGNY
                     ILPAVIARYRHDYPQLPIELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLE
                     DELVVFAAPTSPLARGPVTLEQLAAAPWILRERGSGTREIVDYLLLSHLPKFEMAMEL
                     GNSEAIKHAVRHGLGISCLSRRVIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLS
                     NALRRFLDYCDPANIPR"
     gene            6395..7864
                     /gene="lysP"
                     /locus_tag="OQQ19_002334"
     CDS             6395..7864
                     /gene="lysP"
                     /locus_tag="OQQ19_002334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-specific permease"
                     /protein_id="HCS1803937.1"
                     /translation="MVSETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATIS
                     QAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNY
                     WYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFS
                     LIKVTTVIVFIIVGVLMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIVGFSF
                     QGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDV
                     KDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPR
                     IFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAIS
                     HYRFRRGYVLQGHDINDLPYRSGFFPLGPIFAFILCLIITLGQNYEAFLKDTIDWGGV
                     AATYIGIPLFLIIWFGYKLIKGTHFVRYSEMKFPQNDKK"
     gene            8157..10137
                     /gene="cirA"
                     /locus_tag="OQQ19_002335"
                     /pseudo
     CDS             8157..10137
                     /gene="cirA"
                     /locus_tag="OQQ19_002335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416660.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="catecholate siderophore receptor CirA"
     gene            complement(10169..11005)
                     /gene="yeiG"
                     /locus_tag="OQQ19_002336"
     CDS             complement(10169..11005)
                     /gene="yeiG"
                     /locus_tag="OQQ19_002336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HCS1803938.1"
                     /translation="MEMLEEHRCFEGWQQRWRHDSSTLNCPMTFSIFLPPPRDHTPPP
                     VLYWLSGLTCNDENFTTKAGAQRVAAELGIVLVMPDTSPRGEKVANDDGYDLGQGAGF
                     YLNATQPPWATHYRMYDYLRDELPALVQSQFNVSDRCAISGHSMGGHGALIMALKNPG
                     KYTSVSAFAPIVNPCSVPWGIKAFSSYLGEDKNAWLEWDSCALMYASNAQDAIPTLID
                     QGDNDQFLADQLQPAVLAEAARQKAWPMTLRIQPGYDHSYYFIASFIEDHLRFHAQYL
                     LK"
     gene            11263..11931
                     /gene="folE"
                     /locus_tag="OQQ19_002337"
     CDS             11263..11931
                     /gene="folE"
                     /locus_tag="OQQ19_002337"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HCS1803939.1"
                     /translation="MPSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHM
                     TEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKITLIENKMKVDEMVTV
                     RDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQIL
                     IALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAV
                     RHHN"
     gene            11948..13105
                     /locus_tag="OQQ19_002338"
     CDS             11948..13105
                     /locus_tag="OQQ19_002338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF418 family protein"
                     /protein_id="HCS1803940.1"
                     /translation="MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAITP
                     QDAWTWAFLDLIGQVKFLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLF
                     WDGDILLAYGLVGLICWRLVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLISDSQTSRA
                     WTPDASAILYEKYWKLHGGVEAISNRADGVGNSLLALGAQYGWQLAGMMLIGAALMRS
                     GWLKGQFSLRHYRRTGFVLVAIGVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAPF
                     QAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNYLLQTLICTMLFYHLGLFMHFDR
                     LELLAFVIPVWLANILFSVIWLRYFRQGPVEWLWRQLTLRAAGTAISKTSR"
     gene            13247..14287
                     /gene="galS"
                     /locus_tag="OQQ19_002339"
     CDS             13247..14287
                     /gene="galS"
                     /locus_tag="OQQ19_002339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708050.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator GalS"
                     /protein_id="HCS1803941.1"
                     /translation="MITIRDVARQAGVSVATVSRVLNNSTLVSADTREAVMKAVSELD
                     YRPNANAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAE
                     KERHAIEVLIRQRCNALIVHSKALSDDELAQFMDNIPGMVLINRVVPGYAHRCVCLDN
                     LSGARMATRMLLNNGHQRIGYLSSSHGIEDDAMRKAGWMSALKEQDIIPPESWIGTGT
                     PDMPGGEAAMVELLGRNLQLTAIFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIP
                     IARYTDPQLTTVRYPIASMAKLATELALQGAAGNIDPRASHCFMPTLVRRHSVATRQN
                     AAAITNSTNQAM"
     gene            14567..15565
                     /gene="mglB"
                     /locus_tag="OQQ19_002340"
                     /pseudo
     CDS             14567..15565
                     /gene="mglB"
                     /locus_tag="OQQ19_002340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416655.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
     gene            15626..17146
                     /gene="mglA"
                     /locus_tag="OQQ19_002341"
     CDS             15626..17146
                     /gene="mglA"
                     /locus_tag="OQQ19_002341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020883197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     ATP-binding protein MglA"
                     /protein_id="HCS1803942.1"
                     /translation="MVSSTTPSSGEYLLEMSGINKSFPGVKALDNVNLKVRPHSIHAL
                     MGENGAGKSTLLKCLFGIYQKDSGTILFQGKEIDFHSAKEALENGISMVHQELNLVLQ
                     RSVMDNMWLRRYPTKGMFVDQDKMYRETKAIFDELDIDIDPRARVGTLSVSQMQMIEI
                     AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE
                     VTVLRDGQWIATEPLAGLTMDKIIAMMVGRSLNQRFPDKENKPGEVILEVRNLTSLRQ
                     PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKQINNHNANE
                     AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDKSRMKSDTQWVIDS
                     MRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIA
                     ELAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGIVDTKTTTQNEILRLASLHL"
     gene            17162..18172
                     /gene="mglC"
                     /locus_tag="OQQ19_002342"
     CDS             17162..18172
                     /gene="mglC"
                     /locus_tag="OQQ19_002342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     permease MglC"
                     /protein_id="HCS1803943.1"
                     /translation="MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSN
                     ILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNANKVFPEMAT
                     MPIALVILIVCAIGAVIGLINGLIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP
                     ISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPE
                     AAKVSGVNVGLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGG
                     VSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPCWQYIIKGAIIIFAVALDSLKYAR
                     KK"
     gene            complement(18415..19310)
                     /gene="preA"
                     /locus_tag="OQQ19_002343"
                     /pseudo
     CDS             complement(18415..19310)
                     /gene="preA"
                     /locus_tag="OQQ19_002343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416652.4"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreA"
BASE COUNT         4600 a         4772 c         5119 g         4819 t
ORIGIN      
        1 attatgcgta aacaaatcgt tgccgataat attcacggtg aaaccggact ggatggtccg
       61 gtattcgagt cgctgacccg ccaggcagaa agtacccacg cggtgaaata catcattgat
      121 accctgatgg caagcgatgg cgatatcact ctggtgccgg ttggtccgct ttcaaatatc
      181 gcggtggcaa tgcgtatgca acccgcgatc ctgcccaaaa tccgtgaaat tgtgctaatg
      241 ggcggcgctt acggtacagg caacttcacg ccatctgccg agttcaacat ctttgctgat
      301 ccggaagcag cccgcgtggt gttcacctcc ggcgttccat tagtgatgat gggcctcgat
      361 ctcaccaacc agactgtttg caccccggac gtgattgcac ggatggaaag ggcaggcggc
      421 cctgccggag agctgttcag cgacatcatg aacttcactc tcaaaacgca gttcgaaaac
      481 tacggcctgg ctggcggccc ggtgcacgac gccacctgca tcggttatct gattaaccct
      541 gatggcatta aaacccagga gatgtacgtc gaagtggacg tcaacagtgg cccttgctat
      601 gggcgtaccg tctgcgacga gctgggcgtt cttggcaagc ccgctaatac caaagtcggc
      661 atcactattg ataccgactg gttctggggc ttagtcgaag agtgcgtgcg cggctacatc
      721 aaaacccatt aagtgttgat aacaagccgg gtcagtatcg caagatccaa gcccggctat
      781 ttctgatggg cagaaagccg tcgcccaata tgacatgaag agataataac tatggatgtc
      841 atgagaagtg ttctgggaat ggtggtattg ctgacgattg cgtttttgct gtcagtaaac
      901 aagaagaaga tcagcctgcg taccgttggc gcggcgttag tgttacaggt cgtgattggc
      961 gggattatgc tttggttacc ggcagggcgt tgggtcgctg aaaaagtcgc ttttggcgtg
     1021 cataaagtga tggcgtacag cgacgcgggt agcgcattta tcttcggttc gctggtcggg
     1081 ccgaaaatgg acacgctgtt tgatggcgca ggatttatct ttggtttcag ggtattaccg
     1141 gcaattatct tcgtcactgc actggtgagt attctctact acatcggtgt gatggggatt
     1201 ttaattcgca ttctcggcgg tatattccag aaagcattaa atatcagcaa gattgagtca
     1261 ttcgtcgcgg tcaccaccat tttcctcggg caaaacgaaa ttccggcgat cgtcaaaccc
     1321 tttatcgatc atctgaatcg caatgaatta tttacagcga tttgtagtgg catggcctcg
     1381 attgctggtt cgacaatgat tggttacgcc gccctgggcg tacctgtgga atatttgctg
     1441 gcggcatcgt taatggcgat cccaggcggg atcttgtttg ctcgcctgtt aagcccggct
     1501 acggaatctt cgcaggtttc ctttaataac ctctctttca ccgaaacacc gccaaaaagc
     1561 attattgaag ccgctgcgac aggggcaatg accgggctga aaatcgccgc cggtgtagcg
     1621 acagttgtta tggcatttgt cgccatcatt gcgttaatta atggtattat cggcggcgtt
     1681 ggcggctggt ttggttttgc acatgcctcg ctggagtcca ttttaggtta cctgttggcc
     1741 ccattggcgt gggtgatggg ggttgactgg agtgatgcaa atcttgccgg gagtttgatt
     1801 gggcagaagc tggcgatcaa tgaatttgtc gcttatctca atttctcgcc atatctgcaa
     1861 acgggtggca ctctggatgc taaaaccgtg gcgattattt ctttcgcgtt gtgcggtttc
     1921 gctaactttg gttctatcgg ggtggtggtg ggggcgtttt ctgcggttgc gccacaccgt
     1981 gtgccggaaa tcgcccaact tggtttacgc gcgctggcgg cggcgacact ttctaacctg
     2041 atgagtgcta ctattgcagg attctttatt ggtttagcgt agtgcgcaat ttatgagccg
     2101 gataagatgc ggtcaagcgt cgaatccggc aacattgtta caccattggc actaatgaaa
     2161 gcgcgttatc ggcagacagg gtagggttgt ttaagctgcc gctggcgcgc gaaattgccg
     2221 cgcaggctac cgcaaaacgg gcgctgtcgc ggaaactgta tccttcaaga aagctatata
     2281 ccaggcccgc cataaaacca tcgccagcac caaaactgtc tactgtcgta tgcgctggcg
     2341 cggtcagcaa aaattgttct ccatcctttt cgctgcaata aactgactca tcgggcaaat
     2401 aaacaaacag ttgctgaaca ccttgctgat gcaatgcatt cactgcggca ttacggtcag
     2461 catcgctggt gatcgcctgt ccccataaaa tttccagctc cggtaaagtg ggtttcaggg
     2521 tgtgaatatg cgccagccag tgtttgattt tgcccgcttt gaattctgaa acggtatcga
     2581 caaacaccgg gatttcatca gcgagggtaa agacccattc cagcgcctcg gctgtcaggt
     2641 tgcaatcagc cagtaccacg cccgcatgac gaagtaaatc gcgcgacccg ttcagtagtt
     2701 gcggtgtcaa ctgttccagc agatgggtat cgttaatcgc cagcacggtt tgatcgtctc
     2761 gattggcaat tgccagatac gtcgatgtgc tttgaccatg caaacgaacg cagccggaga
     2821 cattcacgcc ggcacggcgc gtttcttcca ggagcatttc gccataaaag tcatcgccaa
     2881 tcactgaaag caaatggacg tcacggccta acagcgccag attgtgggcg atgttgcgtc
     2941 ccacgccgcc cgccgagcaa tgaattgtac cgggatgaga agccgcttgc gggtaacgga
     3001 tatccgcgat cccgcgaata tccatattga ttgtccccac cactacgcag tattcctgct
     3061 cggtgagaat gtaacctttg cctttaatcc gccctttgcg cattaaatcc ataatatgcg
     3121 ccgcaacgcg cgaacgactg atttgcagca tgtccgcaat ttcgttctgc tgaatcagcg
     3181 ggttacgccg taaaattgca aggatctcct tttcccggtt attcatcttc aggctaccgc
     3241 tttttcagtt tgttgcgctt tcagccaggc gatctcttct gcccagatat ccgggttgat
     3301 ggtttcaagg atcagcggaa tgccgtcgaa acggtcgtcc tgcatgatcc agcggaacgc
     3361 atcatgaccg atattgcctt caccgaggct atgatggcgg tcaacgcggc tgccaaaggt
     3421 gcttttcgca tcgttaaggt gcatcccgcg cagatactta aagccaacaa tacgggcaaa
     3481 atccgcgaac gttttctcgc attcggctgg agtacgcaaa tcatacccgg cagcgaaagc
     3541 atggcaggta tcaatgcaga cgccgacacg ggatttatct tccacgccgt cgataatcgc
     3601 cgcgagatgt tcgaatttaa accctaagtt actgccctga ccggcggtgt tttcaatcac
     3661 cgctgttaca ccttgagttt tatccagcgc aatgttgatg gattcggcaa tacgcgcaag
     3721 gcaatcctct tctgaaatct gcatcagatg gctgccaggg tggaagttga gcaaagaaag
     3781 ccccagttgt tcgcaacgct gcatttcatc tataaaggca tcgcgcgatt tttccagagc
     3841 ttcagtgacc ggatgtccga ggttaatcag atagctgtcg tggggaagaa tttgcgccga
     3901 tgtgtagtga tatttttcac aggctgcttt gaattcatcg atggtttgcg tcgtgagcgg
     3961 tgcggcacgc cactgacgtt ggtttttggt gaacaaggca aacgcggttg cgtcgatttc
     4021 ggcggcgcga attgcggcat ttgccagacc gccagcagca ctaacgtgcg ctccaatgta
     4081 tttcatgcga ggactcctgt taaacccgct ggaggaaaac ggtaatgata gcgggttaac
     4141 aggagcaaga tgtagtggtt tatgcgatga cgctttgaat cacatagtta atcgcaccac
     4201 caccaacaat cagccaggca aacagtacca gtgccatcag cagaggtttc gccccggctt
     4261 ttttcagcgc gctgacgtga gtggtcagac ccagcgccgc catcgccatt gccagcagga
     4321 aggtatccag cgttaccagc atgttcacca cgctctgcgg taacaggtgg aacgagttaa
     4381 agatggcaac gacgatgaac aagatggcaa accacggaat agtgattttg cttttctcgc
     4441 cgctgttcgc cccagacagc tgtttaacac gcgccgccag caggatgagg aacggagcca
     4501 gcatcatcac gcgcagcatt ttggaaataa ctgctgcgtt ttccgcatcc gggctgatgg
     4561 catgacctgc cgccaccacc tgcgccactt cgtgcacagt agaaccaatg tagataccga
     4621 aagtttccgg actaaaccat tgagacatca gcggatatat cgccgggtag aggaaaatcg
     4681 cgacggtccc gaagataaca acggttgcaa cagccacggt tactttactg gcttccgctt
     4741 tcactaccgg ctcagtcgcc agtaccgcgg cagcaccaca gatactgcta ccggcaccga
     4801 tcaaccagct ggtgtgctta tccagaccaa acactttctg ccccaggaag caagccagca
     4861 ggaaggtact ggacagcgtc aacacgtcaa tgatgatccc actgataccg acatcggcaa
     4921 tttgcgagaa cgtcagacgg aagccataaa gaatgatacc cagacgtaat aaatattgct
     4981 tggcaaacag cacaccaccg tcacagcttt tccagatgtg cggatagatg gtgttgccta
     5041 aaaccatccc caacaagatt gcgagggtga gggcactaaa cccggcaccc gcaaccgcgg
     5101 gaatggaacc accccacagg gcgaccccgg tgataactgc actcagggct aaccccggaa
     5161 taaaatgcca cagtgtacga tgttgtttct gtaaggtgat attcgtcata accctctcct
     5221 tataaccggg cataaggtta cgactaactg gtttaaaaat aaaattgatt atatatttat
     5281 aattaatctt tataagtggt aagcgactat gcacatcacc ctccggcagt tggaagtttt
     5341 tgcagaagta ttgaaaagtg gatcaaccac ccaggcgtcg gtgatgctgg cgttgtcgca
     5401 atcagcagtg agcgcagcct tgaccgacct ggaagggcag cttggcgtgc aactgtttga
     5461 tcgcgtgggg aaaagactgg ttgttaatga acacgggcgg ctgctctatc cgcgtgcgtt
     5521 ggcattgctt gaacaggcgg ttgaaatcga acaactgttt cgcgaagaca acggcgcgat
     5581 tcgtatctat gccagtagta ccatcggtaa ctacattctg cctgcagtta tcgcccgtta
     5641 tcgccatgat tatccgcagt tgccgattga acttagcgtt gggaacagcc aggacgtgat
     5701 gcaagcggtg ctggatttcc gcgttgatat tggctttatt gaaggaccgt gccacagcac
     5761 tgaaatcatt tctgaaccgt ggctggaaga cgagctggtg gttttcgccg cgccgacttc
     5821 gccgttggct cgtggtccgg tcaccttaga acagctggcc gctgcgccgt ggatcctgcg
     5881 tgaacgcggt tccggcacgc gggagattgt cgattatcta ttgctgtcac atttaccgaa
     5941 gtttgagatg gcgatggaat taggtaactc cgaggcaatc aaacatgcgg tgcgtcatgg
     6001 gttgggaatt agttgcctgt cgcgacgggt gattgaagat caattgcagg caggcacatt
     6061 aagtgaagtt gcggtccctc tgccgcgcct gatgcgtacg ttgtggcgta tacatcatcg
     6121 gcaaaaacac ctttccaacg cgctacggcg ctttctggac tattgcgatc ccgcgaatat
     6181 accgcgttaa gttgctgtac aagaacatgc tggtgctgtg tcgatttcgt gacgcagcgc
     6241 cctcagcatg cattcgccag aaaagagatt ggctgcttta cttataatcc cagggcgatc
     6301 atgaaggtgt cttataaccg tgtatttctg ccggaaggat tgccaatcgt ctgctacaat
     6361 cgcgcctcat ttttaagatg gatagcattt ttgtatggtt tccgaaacta aaaccacaga
     6421 agcgccgggc ttacgccgtg aattaaaggc gcgtcacctg acgatgattg ccattggcgg
     6481 ttccatcggt acaggtcttt ttgttgcctc tggcgcaacg atttctcagg caggtccggg
     6541 cggggcattg ctctcgtata tgctgattgg cctgatggtt tacttcctga tgaccagtct
     6601 cggtgaactg gctgcatata tgccggtttc cggttcgttt gccacttacg gtcagaacta
     6661 tgttgaagaa ggctttggct tcgcgctggg ctggaactac tggtacaact gggcggtgac
     6721 tatcgccgtt gacctggttg cagctcagct ggtcatgagc tggtggttcc cggatacacc
     6781 gggctggatc tggagtgcgt tgttcctcgg cgttatcttc ctgctgaact acatctcagt
     6841 tcgtggcttt ggtgaagcgg aatactggtt ctcactgatc aaagtcacga cagttattgt
     6901 ctttatcatc gttggcgtgc tgatgattat cggtatcttc aaaggcgcgc agcctgcggg
     6961 ctggagcaac tggacaatcg gcgaagcgcc gtttgctggt ggttttgcgg cgatgatcgg
     7021 cgtagctatg attgtcggct tctctttcca gggaaccgag ctgatcggta ttgctgcagg
     7081 cgagtccgaa gatccggcga aaaacattcc acgcgcggta cgtcaggtgt tctggcgaat
     7141 cctgttgttc tatgtgttcg cgatcctgat tatcagcctg attattccgt acaccgatcc
     7201 gagcctgctg cgtaacgatg ttaaagacat cagcgttagt ccgttcaccc tggtgttcca
     7261 gcacgcgggt ctgctctctg cggcggcggt gatgaacgca gttattctga cggcggtgct
     7321 gtcagccggt aactccggta tgtatgcgtc tactcgtatg ctgtacaccc tggcgtgtga
     7381 cggtaaagcg ccgcgcattt tcgctaaact gtcgcgtggt ggtgtgccgc gtaatgcgct
     7441 gtatgcgacg acggtgattg ccggtctgtg cttcctgacc tccatgtttg gcaaccagac
     7501 ggtatacctg tggctgctga acacctccgg gatgacgggt tttatcgcct ggctggggat
     7561 tgccattagc cactatcgct tccgtcgcgg ttacgtattg cagggacacg acattaacga
     7621 tctgccgtac cgttcaggtt tcttcccact ggggccgatc ttcgcattca ttctgtgtct
     7681 gattatcact ttgggccaga actacgaagc gttcctgaaa gataccattg actggggcgg
     7741 cgtagcggca acgtatattg gtatcccgct gttcctgatt atttggttcg gctacaagct
     7801 gattaaagga actcacttcg tacgctacag cgaaatgaag ttcccgcaga acgataagaa
     7861 ataagtttcc tcccttcctt gctaagccct ctcaaccgag agggcttttt caattccatt
     7921 tccctgacaa atcatgcgga tataaaattt aacatttgga ttgataattg ttatcgtttg
     7981 cattatcgtt acgccgcaat caaaaaaggc tgacaaatca gaggctgttc cggctttctg
     8041 ggatgatcac ctgcatacaa ataagtccac cgcgatgctg ccgtacgcaa ggggacgtga
     8101 agaaggtgtg agcgataacc cattttattt tcgtagttac ctcatggaga tatggaatgt
     8161 ttaggttgaa ccctttcgta cgggtcaggc tgtgtttgtc cgctatttct tgtgcatggc
     8221 ctgtgttagc ggtcgatgat gatggcgaaa cgatggttgt cactgcatct tccgttgaac
     8281 aaaacctcaa agatgcaccc gccagtatca gcgtcattac ccaggaagac ctgcagcgaa
     8341 aaccggtaca gaatctgaag gatgtcctca aagaagtgcc tggcgtacaa ctgacgaacg
     8401 aaggggataa ccgtaagggc gttagtattc gtggtctgga cagcagctac accctgattc
     8461 tcgtcgacgg taaacgcgtt aactcccgca atgccgtctt ccgccacaat gatttcgatc
     8521 tgaactggat cccggtcgat tccatcgaac gtattgaagt ggttcgtggc ccgatgtcgt
     8581 cgctatacgg ctccgatgcg ctcggcggtg tagtgaatat catcaccaaa aaaatcggtc
     8641 agaaatggtc gggtaccgtt accgtcgata ccaccattca ggaacatcgc gatcgcggtg
     8701 atacctataa cggtcagttc tttaccagtg gaccattaat tgatggtgtg ctgggaatga
     8761 aagcttacgg cagcctggca aaacgtgaaa aggatgaccc gcaaaactca acgaccaccg
     8821 ataccggaga aatgccgcgt attgaaggat tctccagccg cgacggcaat gtcgaatttg
     8881 cctggacacc gaatcaaaat cacgatttta ctgccggata cggtttcgac cgtcaggaac
     8941 tcgctggaca aaaaccgcct ggaacgccag aactactccg tcagccataa tgggcgttgg
     9001 gattacggca ccagcgaact gaaatactac ggtgagaaag tcgagaacaa aaaccctggc
     9061 aacagcagcc cgataacttc cgaaagcaat acggtcgacg gcaaatacac gttgccgctg
     9121 acggcgatta atcagtttct cacggttggc ggtgaatggc gtcacgacaa acttagcgat
     9181 gcggtgaacc tgaccggggg aaccagctcc aaaacgtctg ccagccagta cgcgctgttt
     9241 gtggaagatg aatggcggat cttcgagccg ctggcgctga cgaccggcgt gcgtatggac
     9301 gatcacgaaa cctacggtga acactggagt ccgcgtgcct acctggttta taacgccacc
     9361 gacaccgtaa cggtgaaagg gggctgggcg acggcattta aagcaccttc tctgttgcaa
     9421 cttagccctg actggacgag caattcctgc cgtggcgcat gtaagattgt gggtagcccg
     9481 gatctgaaac cagaaaccag cgaaagttgg gagctggggc tttactacat gggtgaagaa
     9541 ggctggctgg aagggggtga atccagcgtt accgttttcc gtaacgatgt gaaagatcgt
     9601 atcagcatca gccgtacgtc tgacgtcaac gctgcaccgg gctaccaaaa ctttgttggt
     9661 tttgagacgg gcgctaacgg acggcgcata ccggtattta gctactacaa cgttaacaaa
     9721 gctcgtattc agggcgtgga aaccgaactg aaaattccgt tcaacgatga atggaaactg
     9781 tcgatcaact acacctacaa cgatggtcgt gatgtcagca acggcgaaaa caaaccgcta
     9841 tccgatctgc cgttccatac tgctaacggt acgctggact ggaaaccgct ggcgctggaa
     9901 gactggtcat tctatgtttc tggtcactat accgggcaga aacgcgccga cagcgcgacg
     9961 gctaaaacac cgggcggtta taccatctgg aataccggcg cggcctggca ggtgactaaa
    10021 gacgtcaaac tgcgcgcagg cgtgctgaac cttggcgaca aggatctcag tcgtgacgac
    10081 tacagctata acgaagacgg acgtcgttac tttatggcag tggattatcg cttctgatga
    10141 gaagatgccc ggcgaaccgg gcggactttc acttcagtaa atactgcgca tggaagcgca
    10201 ggtgatcctc tataaaagag gcgatgaagt agtaactgtg atcatatccc ggctgaatac
    10261 gcagcgtcat cggccacgct ttctggcgcg cggcttctgc cagtaccgca ggttgcaact
    10321 ggtcggcaag aaactgatca ttatcgccct gatcgataag cgtcgggatc gcatcctgcg
    10381 cgttactggc atacatcagc gcgcaactgt cccattccag ccatgcattt ttgtcctcac
    10441 ctaaatagct gctaaacgct ttgattcccc acgggacgct gcacggattc acaattggcg
    10501 caaaggccga aacgctggtg tatttacccg gatttttcag cgccataatc agcgcaccgt
    10561 gaccacccat tgagtgaccg ctaatggcgc agcggtcgct gacattaaat tgcgactgaa
    10621 ccagcgccgg taattcatcg cgcagataat catacatccg gtaatgcgtc gcccacggcg
    10681 gttgcgtggc attaagataa aagcctgcgc cctggcctaa atcgtagcca tcgtcgttgg
    10741 caaccttttc gccgcgcggg ctggtgtctg gcatcaccag tacaatcccc agttctgccg
    10801 ccacgcgctg ggcacccgcc ttggtggtga agttctcgtc attgcaggtt aatccggaaa
    10861 gccagtacag cactggtggc ggggtgtgat cacgaggggg tgggagaaag atactgaacg
    10921 tcatcgggca gtttaaggta ctggagtcgt gtcgccagcg ttgctgccag ccttcaaaac
    10981 agcggtgctc ttcgagcatt tccatgcgtg gctccttgtt gtgttgtttg caatttcttc
    11041 atcataccgt ttattcaatg tgctgtgagt aactttcact tccgtatttg cataacgatg
    11101 ttttaacatc tgctgatgaa aggcagcggc aattacaata attatcgctg tgaatactgg
    11161 attatgtgcg ccgcctcacg cacaataatc aggctgtaaa tcagcttaat aactttgccc
    11221 ccacgcaggg cggaggcgtc acacctgcag gagaaatcat aaatgccatc actcagtaaa
    11281 gaagcggccc tggttcatga agcgttagtt gcgcgaggac tggaaacacc gctgcgcccg
    11341 cccgtgcatg aaatggataa cgaaacgcgc aaaagcctta ttgctggtca tatgaccgaa
    11401 atcatgcagc tgctgaatct cgacctggct gatgacagtt tgatggaaac gccgcatcgc
    11461 atcgctaaaa tgtatgtcga tgaaattttc tccggtctgg attacgccaa cttcccgaaa
    11521 atcaccctca ttgaaaacaa aatgaaggtc gatgaaatgg tcaccgtgcg cgatatcact
    11581 ctgaccagta cctgtgaaca ccattttgtt accatcgatg gcaaagcgac ggtggcttat
    11641 atcccgaaag attcggtgat cggtctgtca aaaattaacc gtatcgtgca gttctttgcc
    11701 cagcgtccgc aggtgcagga acgtctgacg cagcaaattc ttattgcgct acaaacgctg
    11761 ctgggcacca ataacgtggc tgtctccatt gatgcggtgc attactgcgt gaaagcgcgt
    11821 ggcatccgcg atgcaaccag tgccacaaca acgacctctc ttggtggatt gttcaaatcc
    11881 agtcagaata cgcgccacga gtttctgcgc gctgtgcgtc atcacaactg attaaaaggc
    11941 aggaaccatg gagcgcaacg taacgctcga ttttgttcgc ggcgtcgcca ttctggggat
    12001 cctgctatta aacatcagcg cctttgggct accaaaggcg gcttatctca atcccgcctg
    12061 gtacggcgct attacgccgc aggatgcatg gacctgggca tttctcgatc tcatcggcca
    12121 ggtgaaattc ctcacgcttt ttgcgctgct gtttggtgcg ggcctgcaaa tgttgctgcc
    12181 ccgtggcaga cgctggatcc agtcgcggtt aacgctgtta gtcttgctgg gttttattca
    12241 cggtttattg ttctgggacg gcgatattct gctggcttac gggctggtgg gcttaatctg
    12301 ctggcggctg gtgcgcgatg cgccatcggt aaaaagcctg tttaatacag gcgtcatgct
    12361 ttatctggtg gggcttggcg ttttgctgtt attggggctg atttccgaca gccagaccag
    12421 ccgcgcctgg acgccggatg catcggctat tttgtatgaa aaatactgga agcttcacgg
    12481 cggcgttgaa gcgatcagta atcgtgccga tggtgttggc aacagtttac tggcactggg
    12541 cgcacagtat ggctggcaac tggcagggat gatgctcatt ggtgcggcgc tgatgcgcag
    12601 cggctggctg aaagggcagt tcagcttacg tcactatcgt cgtactggtt ttgtgctggt
    12661 ggcgattggg gtgaccatta accttcctgc catcgccctg caatggcagc tggactgggc
    12721 gtatcgctgg tgtgccttct tacttcaaat gccgcgggaa ctgagtgcgc cgtttcaggc
    12781 gattggctat gcgtcgctgt tttatggctt ctggccgcaa ttgagccgct ttaagctggt
    12841 gcttgcgatc gcctgcgtcg gacggatggc gctgaccaac tatctattgc aaacgctgat
    12901 ttgtaccatg cttttttacc acctcggttt gtttatgcat tttgaccgcc tggagctgct
    12961 ggcgtttgtt attccggtat ggctggcgaa tatcctcttc tctgttatct ggctgcgtta
    13021 cttccgccag gggccggtgg aatggctctg gcgtcagtta actttgcgtg ctgccggaac
    13081 ggcaatatct aaaacatcaa gataacgatc tggatcacat tcgttaacaa aacggctgta
    13141 accgtttcca ttgctgtgac tcgattcacg aagtcctgta ttcagtgctg acaaaatagc
    13201 cgccagcaag cagtcattta ctgcaatctc ataacaggta gtgaatatga tcaccattcg
    13261 tgatgtagcg cgtcaggctg gcgtctctgt ggcaacggtt tcccgggtgc tcaataacag
    13321 cacgctggtc agtgccgaca cgcgtgaagc agtaatgaaa gccgtgagtg agctggatta
    13381 tcggccaaac gccaatgccc aggcgctggc aactcaggtt agcgacacca ttggcgtggt
    13441 ggtgatggac gtttctgatg cgtttttcgg cgcgctggta aaagcggtgg atctagtcgc
    13501 tcagcagcat cagaaatacg tgctaatcgg caatagctat catgaagcgg aaaaagagcg
    13561 tcacgccatt gaggtgttaa ttcgccagcg ttgtaatgcg ttgattgttc actcaaaagc
    13621 attgagtgac gatgaactgg cgcaatttat ggataacatt cccggtatgg tgttaatcaa
    13681 ccgcgttgtg ccggggtacg cccatcgttg cgtttgcctg gataatctca gcggtgcccg
    13741 aatggcgacg cgcatgttgc tgaataacgg tcatcaacgt attggttatc tttcttccag
    13801 tcacggcatt gaagatgacg ccatgcgtaa agcaggctgg atgagtgcgt tgaaagagca
    13861 ggatattatt ccgccggaaa gctggattgg cactggtacg ccggacatgc cgggcggtga
    13921 ggcggcgatg gttgaactgc tggggcgcaa tctacaactt accgctatat ttgcttataa
    13981 cgacaatatg gccgctggcg cactgacagc attaaaagat aatggcattg cgattccgtt
    14041 acatctctca atcatcggtt tcgatgatat tcccatcgcc cgttacaccg acccgcaatt
    14101 aacgaccgtg cgttatccca ttgcttcaat ggctaaatta gccaccgaac tggccttgca
    14161 gggggcagca ggcaatattg atcctcgtgc cagccactgt tttatgccga cgttagtgcg
    14221 tcgccattct gtcgcaacgc gccagaatgc ggcggcgatc actaactcaa caaatcaggc
    14281 gatgtaaccg ctttcaatct gtgagtgatt tcacagtatc ttaacaatgt gatagctatg
    14341 attgcaccgt tttaacgttg taacccgtat gtaacagtga ataatcactt tcaccgaggt
    14401 aatagcgtca taacaacaat taaagccgtt ttctggagcg ttaccgggca tggaagaacg
    14461 aattttaaaa agtgagcttc ggcgttcagt aacacttcat taactctact gccctgccga
    14521 gcatttatct caagcactac cctgcataag aaaaaccgga gataccatga ataagaaggt
    14581 gttaaccctg tctgctgtga tggccagcat gttattcggt gccgctgcac acgctgctga
    14641 tactcgcatt ggtgtaacaa tctataagta cgacgataac tttatgtctg tagtgcgcaa
    14701 ggctattgag taagatgcga aagccgcgcc agatgttcag ctgctgatga atgattctca
    14761 gaatgaccag tccaagcaga acgatcagat cgacgtattg ctggcgaaag gggtgaaggc
    14821 actggcaatc aacctggttg acccggcagc tgcgggtacg gtgattgaga aagcgcgtgg
    14881 gcaaaacgtg ccggtggttt tcttcaacaa agaaccgtct cgtaaggcgc tggatagcta
    14941 cgacaaagcc tactacgttg gcactgactc caaagagtcc ggcattattc agggcgattt
    15001 gattgctaaa cactgggcgg cgaatcaggg ttgggatctg aacaaagacg gtcagattca
    15061 gtccgtactg ctgaaaggtg aaccgggcca tccggatgca gaagcacgta ccacttacgt
    15121 gattaaagaa ttgaacgata aaggcatcaa aactgaacag ttacagttag ataccgcaat
    15181 gtgggacacc gctcaggcga aagataagat ggacgcctgg ctgtctggcc cgaacgccaa
    15241 caaaatcgaa gtggttatcg ccaacaacga tgcgatggca atgggcgcgg tagaagcact
    15301 gaaagcacac aacaagtcca gcattccggt gtttggcgtc gatgcgctgc cagaagcgct
    15361 ggcgctggtg aaatccggtg cactggcggg cacagtactg aacgatgcta acaaccaggc
    15421 gaaagcgacc tttgatctgg cgaaaaacct ggccgatggc aaaggtgcgg ctgatggcac
    15481 caactggaaa atcgacaaca aagtggtccg cgtaccttat gttggcgtag ataaagacaa
    15541 cctggctgaa ttcagcaaga aataagactg attgggcgca gtcgtttact gcgcccttat
    15601 tgtatggcca acaaggtaaa attatatggt cagctcaacg actccgtctt ccggggaata
    15661 cttgttggaa atgagcggta tcaacaagtc ctttcctggt gttaaggcac ttgataacgt
    15721 taatttaaaa gtccggccac attctatcca tgcattaatg ggggaaaacg gtgcaggaaa
    15781 atcgacatta ttaaaatgcc tgtttggtat ttatcaaaaa gactccggca ccattttatt
    15841 ccagggtaaa gagatcgatt tccattccgc caaagaggca ctggaaaatg gtatttcgat
    15901 ggtacaccag gagttaaacc tggtattaca acgttcggtg atggataaca tgtggctgag
    15961 gcgatatccc accaaaggca tgtttgtcga tcaggacaaa atgtaccgcg aaaccaaagc
    16021 gatttttgat gaactggata ttgatatcga tccgcgtgcg cgcgtcggca cattatccgt
    16081 ttcgcaaatg cagatgatcg aaatcgccaa agcgttttcc tataacgcga aaattgtgat
    16141 tatggatgaa ccgacttctt cgttaaccga aaaagaggtc aatcatctgt tcactattat
    16201 tcgtaaatta aaagagcgcg gctgcggtat tgtttatatc tcgcataaaa tggaagaaat
    16261 cttccagtta tgtgatgaag ttaccgtatt gcgcgacggt cagtggatcg ccaccgaacc
    16321 gctggcagga ctgacgatgg acaagatcat cgccatgatg gttgggcgtt ctcttaatca
    16381 gcgttttcct gacaaagaaa acaagccggg cgaagtcatc ctcgaggtgc gtaacctaac
    16441 gtcactgcgc cagccgtcga ttcgcgatgt ctcgtttgat ctgcataaag gggagatcct
    16501 cggtattgcc gggctggtgg gggcgaaacg taccgatatt gttgagacgt tatttggtat
    16561 tcgcgagaaa tcggctggca ccattacgtt gcacggcaaa cagatcaata accataatgc
    16621 caacgaagcc ataaaccacg gatttgcact ggtaactgag gagcgccgct caacgggaat
    16681 ttatgcctat ctggatattg gttttaactc gttaatttcc aatattcgca actacaaaaa
    16741 taaagttggt ttactggata aatcgcggat gaaaagcgat acccagtggg tgattgattc
    16801 gatgcgggta aaaacaccgg ggcatcggac gcaaattggt tcgctctcag gtggtaatca
    16861 gcaaaaggtg attattgggc gctggctact aacgcaacca gaaatattaa tgctcgatga
    16921 accgacgcgc ggtattgatg tcggggcgaa gtttgagatc tatcagttaa ttgccgaact
    16981 ggcgaagaaa ggcaaaggga ttattattat ctcctctgaa atgcctgagt tgttagggat
    17041 aacagaccgt attctggtca tgagcaatgg tctcgtttcc ggaattgtcg acacaaaaac
    17101 aacaacgcaa aacgaaattc tgcgtcttgc gtctttgcac ctttaagatt aggggcttcc
    17161 catgagtgcg ttaaataaga aaagttttct tacttacctg aaagagggcg gtatttacgt
    17221 cgttctttta gttttgctgg cgattattat tttccaggac ccaacatttt taagtctgtt
    17281 gaacttaagt aatattctca cccagtcatc ggtgcgtatt attatcgcgc tcggtgtggc
    17341 agggttaatt gtcacccagg ggaccgacct ttctgcgggg cgtcaagtag ggctggcagc
    17401 agtggtggca gcgacattat tgcagtccat ggataacgcc aataaagtgt tcccggaaat
    17461 ggcgacgatg ccgattgcgc tggttattct gattgtctgt gccattggtg cggtgatcgg
    17521 tttgatcaac ggtctgatta tcgcttatct caacgttacg ccgttcatta ccacgctcgg
    17581 cacgatgatc atcgtctatg gcatcaactc gctctattac gactttgtcg gggcgtcgcc
    17641 aatttctggt tttgacagtg gcttctctac ctttgctcag ggctttgtcg cgctggggag
    17701 tttccgtctc tcttacatca ccttctacgc gttgattgcg gtggcgttcg tctgggtgtt
    17761 gtggaacaaa acccgcttcg gtaagaacat ttttgccatt ggcggtaacc cggaagcggc
    17821 aaaagtatct ggtgtcaacg tcggcctgaa cctgctgatg atctacgcgt tgtctggcgt
    17881 gttctatgcc tttggcggga tgttagaagc cggacgtatc ggctctgcca ccaacaacct
    17941 cggctttatg tatgagctgg atgctatcgc ggcgtgcgtg gtaggcggtg tatcgttcag
    18001 cggcggtgtg gggacggtga ttggcgtggt gaccggggta attattttta ccgtcatcaa
    18061 ctatggcctg acgtatatcg gcgtaaaccc atgctggcag tacatcatca aaggggcgat
    18121 tattatcttc gccgtagcgc tggattcact gaaatacgcg cgtaagaaat gatgtgaatg
    18181 tggtccgcat tcggtcataa acgcacataa catcatgatc tgtgtggttt tgtaggccgg
    18241 ataaggcgtt cacgccgcat ccggcaacag gagccaaatg ccggatgcaa cgctggcgcg
    18301 ttttatccgg cctacaataa gctcaacata ctgatttgta tggttttgta ggccggataa
    18361 ggcgttcaag ccgcatccgg cgacaggaac caaatgccgg atgtgacgcg ggttctacaa
    18421 cgttaccggg tgttctttct cgcctttctt aaacttcact tccccgagct caatacaacc
    18481 caccgggcag acgtgaccac aaagcagaca acccacacat ttctcggtat tacaatgcgg
    18541 tgtgcgggtt ttctcgctcc attccatcgc ctggtgaccg ccgtcgtaac aggaaatata
    18601 acagcgtcca cagccaacac atttgtcaag attgatacgg ggatagacaa tataactgcg
    18661 gtctaaatct tccgccggga caatattgtt attcgccaga cctaccatct cctgcaacga
    18721 atcaaatccc tgatcggcga gataatgcga taacccgctc gccatatctt ctacgatgcg
    18781 attgccgtac tgcataatgc cggtggtgac ctgtaacgtt gctgcgccga gcaataaaaa
    18841 ctccgccgca tcctcccagg tttcaatgcc gccgataccg ctgattggga aatcgcgcag
    18901 ttctggatgg gtgcgcattt gctgaatgaa gcgcagggcg atcggtttta ccgctttacc
    18961 ggaatatccg gaaatactcg atttaccgtt aacgatcggc ataccgattt tctgattaag
    19021 atcgatattg gtgatggatt taacggtgtt aattgccgca atgccatctg cgccgccgcg
    19081 cttcgccgcc agcgccactt cgcacatatc accgatattc ggcgtcatct tcgccagcat
    19141 tggcagcgtg gaaccgcgtt tcaccgcccg acaatatttt tctaccagca ccggactttg
    19201 cccgacatcg ctacccatcg catgagaagt catttgcgga caggagaagt tacactcgat
    19261 catatccgcg ccagctcctc ccattgctgc tcattttccc ccatgatcga
//
LOCUS       DAJVSY010000076        19150 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.076, whole genome shotgun sequence.
ACCESSION   DAJVSY010000076 DAJVSY010000000
VERSION     DAJVSY010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19150
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.076"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..909)
                     /locus_tag="OQQ19_002344"
     CDS             complement(<1..909)
                     /locus_tag="OQQ19_002344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017441594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HCS1803944.1"
                     /translation="MTNFTTSTPHDALFKSFLTHPDTARDFMEIHLPKDLRELCDLDS
                     LKLESASFVDEKLRALHSDILWSVKTREGDGYIYVVIEHQSREDIHMAFRLMRYSMAV
                     MQRHIEHDKRRPLPLVIPMLFYHGSRSPYPWSLCWLDEFAAPTTARKLYSAAFPLVDV
                     TVVPDDEIVQHRRVALLELIQKHIRQRDLMGLIDQLVVLLVTECANDSQITALLNYIL
                     LTGDEARFKAFISELTRRMPHHRERIMTIAERIHNDGWLLGRERGRKEGKVEGERSLL
                     RLLLQNGADPEWIQRYTGLSAEQMQAL"
     gene            1376..2608
                     /gene="mdtM"
                     /locus_tag="OQQ19_002345"
     CDS             1376..2608
                     /gene="mdtM"
                     /locus_tag="OQQ19_002345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtM"
                     /protein_id="HCS1803945.1"
                     /translation="MPRFFARHAATLFFPMALILYDFAAYLSTDLIQPGIINVVRDFN
                     ADVSLAPAAVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATMFTTSMT
                     QFLIARAIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLIAPIIGPLSGAAL
                     MHFVHWKVLFAIIAVMGFISFVGLLLAMPETVKRGAVPFSAKSVFRDFRNVFCNRLFL
                     FGAATISLSYIPMMSWVAVSPVILIDAGSLTTSQFAWTQVPVFGAVIVANAIVARFVK
                     DPTEPRFIWRAVPIQLVGLALLIIGNLLSPHVWLWSVLGTSLYAFGIGLIFPTLFRFT
                     LFSNNLPKGTVSASLNMVILMVMSVSVEIGRWLWFNGGRLPFHLLAVVAGVIVVFTLA
                     GLLNRVRQHQAAELAEER"
     gene            2649..3929
                     /locus_tag="OQQ19_002346"
     CDS             2649..3929
                     /locus_tag="OQQ19_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HCS1803946.1"
                     /translation="MNKLIELRRAKMLALSLLLIAAATFVVTLFLPPNFWVSGVKAIA
                     EAAMVGALADWFAVVALFRRVPIPIISRHTAIIPRNKDRIGENLGQFVQEKFLDTQSL
                     VALIRRHEPALLIGNWFSQPENARRVGQHLLQIMSGFLELTDDARIQRLLKRAVHRAI
                     DKVDLSGTSALMLESMTKNDRHQVLLDTLIAQLIALLQRDKSRKFIAQQIVRWLESEH
                     PLKAKILPTEWLGEHSAELVSDAVNSLLDDISRDRAHQIRHAFDRATFALIDKLKNDP
                     EMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSEDSRVKERIARAGQWFGE
                     TLIADDALRASLNGHLEQAAHRVAPEFSAFLTRHISDTVKSWDARDMSRQIELNIGKD
                     LQFIRVNGTLVGGCIGLILYLLSQLPALFPLSNF"
     gene            4045..5197
                     /locus_tag="OQQ19_002347"
                     /pseudo
     CDS             4045..5197
                     /locus_tag="OQQ19_002347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418755.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacyl-CoA dehydratase subunit D"
     gene            5207..5975
                     /locus_tag="OQQ19_002348"
                     /pseudo
     CDS             5207..5975
                     /locus_tag="OQQ19_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313324.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            5972..6229
                     /locus_tag="OQQ19_002349"
     CDS             5972..6229
                     /locus_tag="OQQ19_002349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3343 domain-containing protein"
                     /protein_id="HCS1803947.1"
                     /translation="MKEFLFLFHSTVGVIQTRKALQAAGMTFRVSDIPRDLRGGCGLC
                     IWLTCPPGEEIQWVIPGLTESIYCQQDGVWRCIAHYRVSPR"
     gene            6183..7154
                     /locus_tag="OQQ19_002350"
     CDS             6183..7154
                     /locus_tag="OQQ19_002350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000225344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiK family protein"
                     /protein_id="HCS1803948.1"
                     /translation="MVSGAALHITGFLRVKDSLRSLRILLDILLICLKGITVTKSISL
                     SKRISVIVILFAIVAVCTFFVQSCARKSNHAASFQNYHATIDGKEIAGITNNISSLTW
                     SAQSNTLFSTINKPAAIVEMTTNGDFIRTIPLDFVKDLETIEYIGDNQFVISDERDYA
                     IYVISLTPNSEVKILKKIKIPLQDSPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN
                     GLLSSNELHISKDEALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIG
                     EISLTKGSRGLSHNIKQAEGIAMDASGNIYIVSEPNRFYRFTPKSSH"
     gene            7222..8394
                     /locus_tag="OQQ19_002351"
     CDS             7222..8394
                     /locus_tag="OQQ19_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1803949.1"
                     /translation="MPSSSHPVERFSFSTALFGMLVLTLGMGLGRFLYTPMLPVIMAE
                     GAFSFSQLSWIASGNYAGYLAGSLLFSFGAFHQPSRLRPFLLVSALARGLLILAMAWL
                     PPFILVLLIRFLAGVASAGMLIFGSTLIMQHTRHPFVLAALFSGVGIALGNEYVLAGL
                     HFAFSSQTLWQGAGALSGMMLIALTLLMPSKKHAIAPMPLAKTEQQIMSWWLLAILYG
                     LAGFGYIIVATYLPLMAKDAGSPLLTAHLWTLVGLSIVPGCFGWLWAAKRWGALPCLT
                     ANLLVQAISVLLTLASDSPLLLIISSIGFGGTFMGTTSLVMTIARQLSVPGNLNLLGF
                     VTLIYGIGQILGPALTSMLGNGTSALAGATLCGAAALFIAALISTVQLFKLQVVTS"
     gene            complement(8407..8962)
                     /gene="kptA"
                     /locus_tag="OQQ19_002352"
                     /pseudo
     CDS             complement(8407..8962)
                     /gene="kptA"
                     /locus_tag="OQQ19_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001151849.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2'-phosphotransferase"
     gene            9212..9894
                     /locus_tag="OQQ19_002353"
                     /pseudo
     CDS             9212..9894
                     /locus_tag="OQQ19_002353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418750.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            9891..10352
                     /locus_tag="OQQ19_002354"
     CDS             9891..10352
                     /locus_tag="OQQ19_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiG family protein"
                     /protein_id="HCS1803950.1"
                     /translation="MTTQVRKNVMDMFIDGARRGFTIATTNLLPNVVMAFVIIQALKI
                     TGLLDWVGHICEPVMALWGLPGEAATVLLAALMSMGGAVGVAASLATAGALTGHDVTV
                     LLPAMYLMGNPVQNVGRCLGTAEVNAKYYPHIITVCVINALLSIWVMQLIV"
     gene            10365..11537
                     /gene="iadA"
                     /locus_tag="OQQ19_002355"
     CDS             10365..11537
                     /gene="iadA"
                     /locus_tag="OQQ19_002355"
                     /EC_number="3.4.19.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-aspartyl-peptidase"
                     /protein_id="HCS1803951.1"
                     /translation="MIDYTAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPS
                     DIVPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVG
                     LLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIG
                     VKCAISDHRSAAPDVYHLANMAAESRVGGLLGSKPGVTVFHMGDSKKALQPIYDLLEN
                     CDVPISKLLPTHVNRNVPLFEQALEFARKGGTIDITSSIDEPVAPAEGIARAVQAGIP
                     LARVTLSSDGNGSQPFFDDEGNLTHIGVAGFETLLETVQVLVKDYDFSISDALRPLTS
                     SVAGFLNLSGKGEILPGNDADLLVMTPELRIEQVYARGKLMVKDGKACVKGTFETA"
     gene            11602..12513
                     /gene="hypT"
                     /locus_tag="OQQ19_002356"
                     /gene_synonym="qseD"
     CDS             11602..12513
                     /gene="hypT"
                     /locus_tag="OQQ19_002356"
                     /gene_synonym="qseD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypochlorite stress DNA-binding transcriptional
                     regulator HypT"
                     /protein_id="HCS1803952.1"
                     /translation="MDDCCAVLHNIETKWLYDFLTLEKCRNFSQAAVSRNVSQPAFSR
                     RIRALEQAIGVELFNRQVTPLQLSEQGKIFHSQIRHLLQQLESNLAELRGGSDYAQRK
                     IKIAAAHSLSLGLLPSIISQMPPLFTWAIEAIDVDEAVDKLREGQSDCIFSFHDEDLL
                     EAPFDHIRLFESQLFPVCASDEYGEAIFNLAQPHFPLLNYSRNSYMGRLINRTLTRHS
                     ELSFSTFFVSSMSELLKQVALDGCGIAWLPEYAIQQEIRSGQLVVLNRDELVIPIQAY
                     AYRMNTRMNPVAERFWRELRELEIVLS"
     gene            complement(12506..12898)
                     /gene="iraD"
                     /locus_tag="OQQ19_002357"
     CDS             complement(12506..12898)
                     /gene="iraD"
                     /locus_tag="OQQ19_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313312.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraD"
                     /protein_id="HCS1803953.1"
                     /translation="MMRQSLQAVLPEISGNKTSLLRKSVCSDLLTLFNSPHSALPSLL
                     VSGMPEWQVHNPSDKHLQSWYCRQLRSALLFHEPRIAALQVNLKEAYCHTLAISLEIM
                     LYHDDEPLTFDLVWDNGGWRSATLENVS"
     gene            complement(12895..12978)
                     /gene="idlP"
                     /locus_tag="OQQ19_002358"
     CDS             complement(12895..12978)
                     /gene="idlP"
                     /locus_tag="OQQ19_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iraD leader peptide IdlP"
                     /protein_id="HCS1803954.1"
                     /translation="MENEHQYSGARCSGQAAYVAKRQECAK"
     gene            13570..14400
                     /locus_tag="OQQ19_002359"
     CDS             13570..14400
                     /locus_tag="OQQ19_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2686 family protein"
                     /protein_id="HCS1803955.1"
                     /translation="MSMPLSNALQSQIITDNHFLHHPKVDNKLTREYEYTRMDTENIY
                     LLPLTRGNNHNYDGKSVVEIRKLNIGKQSWPFNYATDTCREFNGITTTGRMLYRNLKI
                     TSALDEIYGGICKKAHAATELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGYNVPGYA
                     GTTIGYISTLPASQAKRWTNEQPRIDIYIDQIITVSGVANSSGFALAALLNANIGMGN
                     DPIIGIEAYPGTAEIHAKMGYNVIPGDEDAPLKRMTLQPSSLPELFELKNGEWNYIGK
                     "
     gene            complement(14541..15314)
                     /gene="uxuR"
                     /locus_tag="OQQ19_002360"
     CDS             complement(14541..15314)
                     /gene="uxuR"
                     /locus_tag="OQQ19_002360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uxu operon transcriptional regulator"
                     /protein_id="HCS1803956.1"
                     /translation="MKSATSAQRPYQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLD
                     VTRTVVREALIMLEIKGLVEVRRGAGIYVLDSSGSHNTDSPDANVCNDAGPFELLQAR
                     QLLESNIAEFAALQATREDIVKMRQALQLEERELASSAPGSSESGDMQFHLAIAEATH
                     NSMLVELFRQSWQWRENNPMWIQLHSHLDDSLYRKEWLGDHKQILAALIKKDARAAKL
                     AMWQHLENVKQRLLEFSNVDDIYFDGYLFDSWPLDKVDA"
     gene            complement(15529..16989)
                     /locus_tag="OQQ19_002361"
                     /pseudo
     CDS             complement(15529..16989)
                     /locus_tag="OQQ19_002361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313309.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fructuronate reductase"
     gene            complement(17070..18254)
                     /gene="uxuA"
                     /locus_tag="OQQ19_002362"
     CDS             complement(17070..18254)
                     /gene="uxuA"
                     /locus_tag="OQQ19_002362"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709912.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HCS1803957.1"
                     /translation="MEQTWRWYGPNDLVSLADVRQAGATGVVTALHHIPNGEVWSVEE
                     ILKRKAIVEDAGLVWSVVESVPIHEDIKTHTGNYEQWIANYQQTLRNLAQCGIRTVCY
                     NFMPVLDWTRTDLEYVLPDGSKALRFDQIEFAAFEMHILKRPGAEADYTEEEIAQAAE
                     RFATMSDEDKARLTRNIIAGLPGAEEGYTLDQFRKHLELYKDIDKAKLRENFAVFLKA
                     IIPVAEEVGVRMAVHPDDPPRPILGLPRIVSTIEDMQWMVDTVNSMANGFTMCTGSYG
                     VRADNDLVDMIKQFGPRIYFTHLRSTMREDNPKTFHEAAHLNGDVDMYEVVKAIVEEE
                     HRRKAEGKEDLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLKGLAEVRGVELAIQRAFF
                     SR"
     gene            18594..18798
                     /locus_tag="OQQ19_002363"
                     /pseudo
     CDS             18594..18798
                     /locus_tag="OQQ19_002363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001646216.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(19041..>19150)
                     /locus_tag="OQQ19_002364"
     CDS             complement(19041..>19150)
                     /locus_tag="OQQ19_002364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1803958.1"
                     /translation="TSAVSLGLTANYARTGGQVTAGNVQSIIGVTFVYQ"
BASE COUNT         4475 a         4868 c         4807 g         5000 t
ORIGIN      
        1 taatgcctgc atttgctctg ccgaaagtcc ggtatatcgt tgtatccatt caggatcggc
       61 cccattctgc aacaacaatc ggaggaggct ccgttcccct tctactttcc cttctttcct
      121 ccccctctcc cttcccaaca gccatccatc attatgaatt cgctctgcaa ttgtcattat
      181 tcgctccctg tggtgtggca ttcgcctggt aagttcgctg ataaacgcct taaaacgcgc
      241 ttcatcgcca gtcagtaaaa tgtaatttaa cagcgcagtt atctggctgt cattagcaca
      301 ctctgtaacc agtaatacta ccagttggtc aataagcccc atcaaatcgc gctggcgaat
      361 atgcttttgg atcaactcca acagggcgac tctgcgatgc tgcacaatct cgtcgtctgg
      421 cacgacagtg acatccacca gcgggaacgc tgcgctataa agtttccgtg cggtagtcgg
      481 ggcggcaaat tcgtccagcc agcacaggga ccaggggtaa ggactacggc taccgtgata
      541 aaacagcatc gggataacca gcggtagcgg ccggcgttta tcatgctcga tatggcgctg
      601 catcaccgcc atggaatatc gcatcaggcg aaatgccata tgaatatcct cgcggctctg
      661 atgttcaatc actacgtaaa tataaccatc accttcacgg gtctttaccg accacagaat
      721 atcggagtgt agcgcccgca atttttcatc gacaaagctg gcggattcca gttttaagct
      781 gtcgagatcg cacagttcac gtaaatcttt gggtaagtgg atctccataa aatcccgcgc
      841 ggtgtcaggg tgagtgagaa aggatttaaa taatgcgtca tgtggcgtgc tggtcgtgaa
      901 gtttgtcatg gcgatccgtc acctgtagat aagatggccc gactttagcg actaacaaaa
      961 ccattctcac ccggcaattt ctcgttcccc gaggtgcttt ccaggcgtct gcaaacgata
     1021 catttttccg gaaacaggct cgcgttttac atttcctgta cccggcagat attccccttt
     1081 ccaccgcgct cttttgatta accgcaaatt ttaattacac ttaaggtgta tattttctat
     1141 gcaacccatc aattaaagag gtgtaatgtg ctgatgacta tttgtaatcg ttatacattc
     1201 tgacctggag tcagaaggta tttctctgtc tgtgtgttca caggcagtgt ggttgattac
     1261 atgaaattca gtacatttgc agtctcgttg cccttctcgc ctgcctttcg tcattaccga
     1321 cggtattgaa tttcgttttc cccgttgggg ttctccgaac aaggagttgt ttgttatgcc
     1381 acgttttttt gcccgccatg ccgccacgct gtttttcccg atggcgttga ttttgtatga
     1441 ctttgccgcg tacctgtcga cggatctgat ccagccgggg atcattaatg tggtccgtga
     1501 ttttaatgcc gatgtcagtc tggccccggc agccgtcagt ctctatctcg cgggcggtat
     1561 ggcgttacag tggctgctgg ggccgctttc cgacaggatt ggccgcaggc cggtgctgat
     1621 taccggggcg ctaatattta cccttgcctg cgctgcgaca atgttcacaa cgtctatgac
     1681 acagtttctt atcgcgcgtg caattcaggg caccagtatc tgttttattg ccaccgttgg
     1741 ttatgtcacg gtgcaggagg cgttcggcca gacaaaaggg atcaagttga tggcgattat
     1801 cacctccatc gtactgattg cgccgattat tggcccgctt tccggcgcag ctctgatgca
     1861 ctttgtgcac tggaaagtcc tttttgccat cattgcagtt atgggtttta tctcatttgt
     1921 tggcttactg ctggcgatgc cagagacggt gaagcgcggc gcggttccat ttagcgccaa
     1981 aagcgtcttt cgcgattttc gtaatgtctt ttgcaatcgg ctgttcctct ttggcgcagc
     2041 aaccatctct ttaagctata tcccaatgat gagttgggtg gctgtctcgc cggtgatcct
     2101 gatcgacgcg ggcagcttaa caacttcgca gttcgcctgg acacaggttc cggtgttcgg
     2161 cgcggtgatt gtcgcgaatg ccatcgtggc gcgtttcgtt aaagatccga ccgaaccgcg
     2221 ctttatctgg cgtgctgtac ccattcaact ggtcggcctc gcgctgttga ttatcggcaa
     2281 tctgctgtca ccgcacgtct ggctgtggtc ggtgctgggc accagtttgt atgctttcgg
     2341 gattggtttg atcttcccga ccttattccg ctttacgctt ttttccaata acttaccgaa
     2401 agggaccgtc tccgcatcgc tgaatatggt gatcctgatg gtgatgtctg tctcggtcga
     2461 aatcggccgc tggctgtggt ttaacggcgg tcgcttgccg tttcatctgt tagccgtcgt
     2521 ggcgggcgtt atcgtcgttt tcaccctggc aggattgctt aatcgcgtgc gccaacatca
     2581 ggctgccgag ctggcggagg agcggtgatt tttgcgcgat cctgccgtca ggctctattc
     2641 ttaacgttat gaataaactc attgaactca gacgcgccaa aatgttggcg ctctctttac
     2701 tgcttatcgc cgctgctacc tttgtcgtta cgctgttttt gccgcccaat ttttgggtga
     2761 gcggcgtgaa ggcgattgct gaagcggcga tggtcggcgc gctggcggac tggtttgcgg
     2821 tggtggcgct gtttcgccgc gtgccgattc cgatcatttc tcgtcatacg gcgattatcc
     2881 cgcgtaataa agaccggatt ggcgaaaatc tcggtcagtt cgtgcaggaa aaatttctcg
     2941 atacccagtc gctggtggca ttgattcgac gtcacgaacc ggcgttgttg attggcaact
     3001 ggtttagtca gccggagaac gcccgccgcg ttggtcagca tctgttgcag atcatgagcg
     3061 gttttcttga actgaccgat gatgcgcgta ttcagcgcct gcttaagcgc gcggtccatc
     3121 gggcgattga taaggtcgat ctttccggaa ccagtgcgtt gatgctggag agtatgacca
     3181 aaaacgatcg tcatcaggtg ctgctcgata cgctgatcgc acagttgatc gcccttctcc
     3241 agcgcgataa atcgcgcaag tttattgccc agcaaattgt tcgctggctg gagagcgagc
     3301 atccgctgaa agccaaaatt ttgcctactg aatggctggg cgaacatagc gcggagttgg
     3361 tttctgacgc ggtgaattct ttgcttgatg atatcagccg cgatcgtgcg catcagatcc
     3421 gtcatgcgtt tgatcgcgcc acttttgccc tgatcgacaa gctgaaaaac gatccagaaa
     3481 tggcagcgcg agccgatgcc gtaaaaagtt atctgaaaga agatgaagct tttaaccgct
     3541 atctcagtga attgtggggg gatttacggg aatggctgaa agcggatatc aacagtgaag
     3601 attctcgtgt gaaagaacgt atcgcgcggg cgggtcaatg gtttggcgaa acgttaattg
     3661 ccgatgatgc cttgcgggca tcgttaaatg gtcacctgga acaagccgcg caccgcgtcg
     3721 cgcctgagtt ttccgcattc ctgacgcgcc acatcagcga tacagtaaaa agctgggatg
     3781 ctcgggatat gtcgcggcaa atcgagttaa atatcggcaa agatctgcag tttatccgtg
     3841 tcaacggtac gctggttggc ggttgtattg ggctaatttt atatttgttg tcgcagctcc
     3901 cggccttgtt ccccctcagc aatttttaga aatccatgaa aaactaagtg gctaaccgcg
     3961 agagagatca aataaaccac actaaaagaa tggtaataat gtggcctctt ttcattatct
     4021 cccgtggtac ggggaaggaa aatcatgtca cttatcaccg atctacccgc cattttcgat
     4081 cagttctctg aagctcgcca gaaaggcttt ctcaccgtca tggatctcaa ggagcgcggc
     4141 attccgctgg ttggcactta ctgcaccttt atgccgcaag agatcccgat ggcagccggt
     4201 gcggttgtgg tttcgctctg ttctacctct gatgaaacca ttgaagaagc ggagaaagat
     4261 ctgccgcgca acctctgccc gctgattaaa agcagctacg gcttcggcaa aaccgataaa
     4321 tgcccctact tctacttttc ggatctggtg gtcggtgaaa ccacctgcga cggcaaaaag
     4381 aaaatgtatg aatacatggc ggagtttaag cccgttcatg tgatgcagtt gccgaacagc
     4441 gttaaggacg atgcctcgcg tgcgttatgg aaagccgaga tgctgcgctt gcaaaaaacg
     4501 gtagaagaac gttttgggca cgagattagc gaagatgctc tgcgcgatgc cattgcgctg
     4561 aaaaaccgcg aacgtcgcgc actggccaat ttttatcatc ttgggcagtt aaatcctccg
     4621 gcgcttagcg gcagcgacat tctgaaagtg gtctacggcg caaccttccg gttcgataaa
     4681 gaggcgttga tcaatgaact ggatgcaatg accgcccgcg ttcgtcagca gtgggaagaa
     4741 ggccagcgac tggacccgcg tccacgcatt ttaatcaccg gctgcccgat tggcggcgca
     4801 gcagaaaaag tggtgcgggc gattgaagag aatggcggct gggttgtcgg ttatgaaaac
     4861 tgcactgggg cgaaagcgac cgagctaatg cgtggcggaa acgggcgatg tctacgacgc
     4921 gctggcggat aaatatctgg cgattggctg ctcctgtgtt tcgccgaacg atcagcgcct
     4981 gcaaatgctc agccagatgg tggaagaata tcaggtcgat ggcgtagttg atgtgatttt
     5041 gcaggcgtgc catacctacg cggtggaatc gctggcgatt aaacgtcatg tgcgtcagca
     5101 gcacaacatt ccttatatcg ctattgaaac agactactcc acctcagatg tcgggcagct
     5161 cagtacccgt gtcgcggcct ttattgagat gctgtaagga gtggcagtga catattcgat
     5221 tggcattgat tctggttcta ccgccaccaa agggatctta ctggcagacg gcgtgattac
     5281 gcgccgtttc ctcgttccaa caccctttcg tccggcaaca gcaattactg aagcctggga
     5341 aactctgcgc gaagggttag agacaacgcc gtttctgacg ctcaccggct atggacggca
     5401 actggtggat tttgccgata aacaagtgac ggaaatctcc tgtcacgggc tgggcgcacg
     5461 gtttcttgcg ccagcaacgc tgcgcggtaa tcgacatcgg tggtcaggac agcaaagtga
     5521 ttcagcttga tgatgacggt aacctgtgcg atttcctgat gaatgacaaa tgcgcggcgg
     5581 gcaccgggcg tttcctggaa gtgatctcgc gcacgcttgg caccagcgtc gagcaactcg
     5641 acagcattac cgaaaatgtc acgccgcatg ccatcacgag tatgtgcaca gtgtttgccg
     5701 aatcagaagt gatcagcctg cgctcagcgg gcgtcgcgcc agaagcgatt ctcgccggag
     5761 tgattaacgc gatggcgcgg aggagtgcca atttcattgc tcgtctctcc tgtgaagcgc
     5821 cgattctgtt tactggtggc gttagtcatt gccagacgtt tgcccggatg ctggaatctc
     5881 acctgggaat gccggtaaat acccatcctg atgcgcaatt tgctggcgca attggcgcgg
     5941 cggtaattgg tcaacgagtg aggacacgcc gatgaaagag tttttatttt tatttcactc
     6001 cacagtcggc gtcatacaaa ctcgcaaagc gttgcaggca gcgggcatga cttttcgcgt
     6061 cagcgatatt ccccgtgatt tacgcggcgg ctgcgggtta tgcatttggc tgacctgtcc
     6121 ccccggcgaa gaaatacaat gggtgatccc tgggctgact gagtcaattt attgccagca
     6181 ggatggtgtc tggcgctgca ttgcacatta ccgggtttct ccgcgttaag gattcattaa
     6241 ggtcgctacg tatacttctc gatatcttat tgatttgcct taaagggatt accgtgacaa
     6301 aaagtatttc gttaagtaaa cgcatctccg ttattgtgat tctttttgcc attgtggcag
     6361 tgtgtacttt cttcgtgcaa tcttgcgccc gtaaaagcaa tcatgcagca tcatttcaga
     6421 attaccacgc caccattgac ggcaaagaaa ttgcaggcat aacgaataat atctcttcgc
     6481 tgacctggtc ggcacaaagc aatactcttt ttagcactat caacaaacct gccgccattg
     6541 ttgaaatgac caccaatggt gattttatcc gcacaattcc tctggatttt gttaaggatc
     6601 tcgagacgat cgaatacatt ggcgataatc agtttgtcat tagcgatgag cgcgattacg
     6661 ccatttatgt gatttcactg accccaaact cggaagtaaa aatcctcaaa aaaataaaaa
     6721 tcccgctgca agactcccca accaattgcg gttttgaagg gttagcttat tctcgccagg
     6781 atcacacttt ctggtttttt aaagagaaaa atccgattga ggtctacaaa gttaacgggc
     6841 tgttaagtag caatgaatta cacatcagca aagacgaggc actacaacgg caatttactt
     6901 tagatgatgt gtccggcgca gaatttaacc agcaaaaaaa tacgcttctg gtgctgtctc
     6961 atgaatctcg cgcactccag gaagtaaccc tggttggcga ggttatcggt gaaatatcac
     7021 taaccaaagg tagtcgaggt ttgtcgcata acatcaaaca ggccgaaggg attgcgatgg
     7081 atgcctctgg taatatttat atcgttagcg aaccaaatcg tttttatcgc tttaccccta
     7141 aatcatcgca ttaacaggct ggcatatttc acctttttgt tattaacttg ttaacaacaa
     7201 aaatgacata caaggttaaa catgccttcg tcctcgcatc ccgtagaacg cttttctttc
     7261 agcaccgcgc ttttcgggat gctggttctg accctaggta tgggattagg tcgcttcctt
     7321 tatacgccta tgttgcccgt cattatggcg gaaggggcgt tttcatttag ccagctctcg
     7381 tggattgcca gcggcaacta tgcggggtat ctggctggca gtctgctatt ttcgtttggc
     7441 gcatttcacc agccgtcgcg cctacgccca tttctgttgg tttctgccct ggcgagaggg
     7501 ttgttgatcc tcgcaatggc atggttgccg ccatttattc tggtgttatt gattcgcttc
     7561 ctggcgggtg tcgccagcgc cggtatgctg atttttggtt cgacgctgat tatgcagcac
     7621 acgcgccatc cttttgtgct ggcagctttg ttttctggcg ttggcattgc actgggcaac
     7681 gaatatgttc tggcaggcct gcattttgcc ttctcctcgc aaacgttatg gcaaggcgcc
     7741 ggggcgcttt ctggcatgat gctgattgca cttacgcttt taatgccctc gaaaaaacac
     7801 gccatcgcac caatgccatt ggcaaaaacg gagcaacaga taatgagctg gtggttactg
     7861 gctattctgt acggccttgc gggatttggt tatatcatcg tcgcgactta cctgccgctc
     7921 atggcgaaag atgcaggctc accattgtta accgcccatc tctggacgtt agtcggctta
     7981 tcaattgtgc caggctgctt tggctggcta tgggcagcaa aacgttgggg ggctttgcct
     8041 tgcctgacgg cgaatttgct ggtgcaggct atcagtgtgc tgcttactct cgccagcgac
     8101 tctcctctct tgcttatcat tagtagtatc ggttttggcg gtacctttat gggcacgaca
     8161 tctctggtga tgactatcgc ccgccaactg agcgttccgg gaaatctcaa tcttttaggc
     8221 tttgtgacgc tcatttacgg cattggacaa atcctcggcc cggcgctgac cagtatgctc
     8281 ggcaatggaa catcggcgct tgccggcgcc actctctgcg gcgcggcggc gttgtttatt
     8341 gctgcgctta tcagcacagt acaattattt aagctgcaag tggtcacttc atgaggagtg
     8401 tttcccttac cactcaagaa attcgaccgc aaccgttgat gtcagccaga ctccgttttc
     8461 cgcttgccag aaaggaatgc ctcgtttcgc catttcctgt gctttgacgg ttaagacaac
     8521 cggcgatccg tgtcttgctc ccactttgcg tgccgttgct tcatcagcag agagatgcac
     8581 gtaatgacga tcccctgcaa tcagcccctg ttttttttat ctcgtcaagg aaacggcttg
     8641 ccgtaccgtg gtagagaaac tgtggcggtg ttttttcggc aaaggaaata gcgacctgcg
     8701 aagtcgaatg cccctgaacc gcgcggatgc acctaccatc actggaataa ctaaaacgct
     8761 ttttatcgct ggttgcgacc acggtatcca gcaatgcacg ggttaatcgc ttgcccgctt
     8821 tttgggcaca aagtatgagc ttatcgatat ccgcccatcc ttcacggtcc agtacgatac
     8881 caatcgcctc cggtttgtgt cggaggacaa aacttaaaaa cttgctcgta tccgccagct
     8941 ctttttcgtt gtgctttgcc atctcgtttt cgtccctgga ttttctgttt ttatttacca
     9001 atgtcattgt cactgggttt atgaattttc tgcaactcaa tcctgcgcag aaccttttcc
     9061 acacagcgta atgtttcccc tatgcaaaaa acgcatagcc agaaacatac ttgcattttc
     9121 cccataccca catggctgat aaggtttttc agttccagga attttcctgg ctcaagcaac
     9181 acacaaacac aaaaaaacaa tggggattgt tatgacacaa caaggggatg ctgtagccgg
     9241 ggagctggcg acagaaaaag tgggcattaa agggtatctg gctttttttc tcaccataat
     9301 cttttttccg gtgttttttc cggaacagac agctggtggc gcgtttttga tttttccgtt
     9361 ctgaacggat cgtttgggca actgcctggt gcgaacggag ccaccacctc atttcgcggc
     9421 gcgggtggtg cgggggctaa agatggcttt ctctttgcgc tggagctggc accgtcagtc
     9481 attctctctc tggggattat ttcaattacc gatggtcttg gtggattacg cgccgcgcag
     9541 cagttaatga cacctgtgct aaaaccgttg ttgggcattc cagggatctg ctcgctggcg
     9601 ctgatcgcta acttgcaaaa cactgatgcc gccgccggta tgaccaaaga gctggcgcag
     9661 gaaggtgaaa ttaccgaacg cgataaagtg attttcgccg catatcaaac cagcggtagc
     9721 gccatcatca ccaactactt ctcttccggc gtcgcggtgt tcgcctttct gggcacgtcc
     9781 gtaatcgtac ctttagccgt catcctggtg tttaaatttg tcggagccaa cattttgcgc
     9841 gtctggctta acttcgaaga acgtcgcaac ccaacgcaag gagcgcaagc atgacaactc
     9901 aggtccgcaa aaacgtcatg gatatgttta tcgatggcgc gcgccgtggc tttactatcg
     9961 ccacgaccaa cctgctgcca aacgtggtga tggcgtttgt catcattcag gcgctgaaaa
    10021 ttaccggcct gctcgactgg gtggggcata tctgtgaacc cgtaatggcg ctgtggggat
    10081 tacccggtga agcggcaacc gtccttttag ccgcattaat gagtatgggg ggcgcagtcg
    10141 gtgttgccgc cagtctggca accgctggcg cattaaccgg tcacgatgtc accgttttac
    10201 tgcccgcgat gtatttaatg ggcaacccgg tgcaaaatgt cggtcgctgc ctggggacag
    10261 ccgaagtgaa tgccaaatat tacccgcata tcattacggt ctgcgtgatt aacgcattgc
    10321 tgtcgatctg ggttatgcag cttattgttt aacaaggagt taccatgatt gattataccg
    10381 cagccggttt taccctgctg cagggagcgc atttgtatgc gccggaagat cggggaattt
    10441 gcgatgtcct cgtcgctaac ggcaaaatta tcgccgttgc cagcaatatc ccttctgaca
    10501 ttgtaccgaa ctgcacggtt gtcgatctca gtgggcagat cctctgccca ggttttattg
    10561 atcaacacgt ccatttgatt ggcggtggcg gcgaagcagg tcccacgacg cgcacgccgg
    10621 aagtggcgct aagtcgcctg acggaagcgg gcgtcacgtc agtggttggt ctgctgggca
    10681 ccgactctat ctctcgccac ccggaatccc tgctcgccaa gacccgtgcg ctcaatgaag
    10741 aaggcatcag cgcctggatg ctgaccggcg cttatcatgt cccttcccgc actattacgg
    10801 gttccgtgga aaaagacgtg gcgattatcg atcgtgtgat tggcgtgaaa tgcgccatct
    10861 ctgatcaccg ttctgccgca ccggacgttt atcacctggc taatatggcg gcagaatccc
    10921 gcgttggcgg tttgctcggc agtaaacctg gcgtcaccgt gttccacatg ggcgacagta
    10981 aaaaggcgtt acagcctatt tatgacctgc tggaaaactg cgatgtgccg atcagcaagc
    11041 tgctgccgac ccacgttaac cgcaacgtac cgttgtttga gcaggcgctg gagttcgcgc
    11101 gcaaaggcgg caccatcgat atcaccagca gcattgacga accggtcgcc cctgccgaag
    11161 gtattgcccg cgccgttcag gcgggtattc cgctggcacg cgtcaccctc agctccgacg
    11221 gcaacggtag ccagccgttc ttcgatgacg aagggaattt aacccatatc ggtgttgcag
    11281 gttttgaaac gttgctggaa accgtgcagg tgctggtcaa agactatgat ttcagtatca
    11341 gcgatgccct gcgcccgctc accagtagcg tagccggttt ccttaacctg agcgggaaag
    11401 gcgaaattct gcctggcaat gacgcagact tactagtcat gacgccagaa ttgcgcattg
    11461 agcaggtata tgctcgcggc aaactgatgg tcaaagacgg caaagcctgc gtgaaaggaa
    11521 cgtttgaaac ggcttaaacg gttgtcagcc gccctaatgg acgtagaatg cccgcaaggg
    11581 cggctgacag agtaaaacgt aatggatgac tgttgtgcgg ttttgcataa tattgaaacc
    11641 aaatggcttt atgattttct gaccctggaa aaatgccgca atttttccca ggcggcagtc
    11701 agtcgtaacg tctcgcaacc ggcattcagc cgccgcatcc gcgcgctgga acaggcgatt
    11761 ggcgttgaat tgtttaaccg ccaggtgacg ccgctgcaac tctcagaaca agggaaaatc
    11821 ttccattcgc agatccgcca tctgttgcaa cagttagaaa gtaaccttgc agagctgcgt
    11881 ggcggcagcg attacgcgca acgtaaaatc aagatagccg ctgcacactc tctttccctc
    11941 ggtctgttac cgtccattat cagccagatg ccgccgctct ttacctgggc gattgaagct
    12001 attgatgtcg atgaagcagt cgataaactg cgtgaagggc aaagtgactg tattttttcc
    12061 tttcacgacg aagatttgct ggaagcaccg tttgaccaca ttcgcttatt tgaatctcaa
    12121 ttgttccccg tttgcgccag tgacgaatac ggagaagcaa tttttaacct cgcgcagcca
    12181 cactttccgt tactgaatta cagccgcaac tcctacatgg ggcgattgat taatcgcacc
    12241 ctgacgcgcc acagcgagtt aagtttcagc accttttttg tctcttcgat gagcgagcta
    12301 ttaaagcagg ttgccctcga cggctgtggg attgcctggc tgccggagta tgccatccaa
    12361 caagaaattc gcagcgggca actcgttgtg ctgaatcggg acgaactggt gatcccgatt
    12421 caggcctacg cataccgtat gaatacccgc atgaatccag ttgccgaacg cttctggcgt
    12481 gaactgcgcg agctggagat tgtgcttagc tgacattctc aagcgtcgca ctgcgccaac
    12541 cgccattatc ccagaccaga tcaaacgtta gcggttcatc gtcgtggtac agcattatct
    12601 caaggctgat cgccagagtg tggcagtacg cttctttcaa attaacctgc aacgccgcaa
    12661 tccgtggctc atgaaataac agtgcagaac gcagctgacg gcaataccag ctctggagat
    12721 gtttgtcgct cgggttatgc acttgccact cgggcatgcc tgaaacaagt aatgacggta
    12781 atgccgaatg aggagaatta aaaagagtga ggagatcgct gcataccgat ttacgcagca
    12841 atgacgtttt attgcctgaa atttcaggta aaacagcctg aagtgattgg cgcatcattt
    12901 tgcgcactcc tgacgtttag caacatatgc ggcttgccct gaacaccggg caccactgta
    12961 ttgatgctca ttttccatag ccattccctt ttgttcatta catccatgtc agtctgagac
    13021 aggcctgaat cctgtcagca aagtataaaa ccttacttgc ctatgaatat ctactgactt
    13081 ttcaggaaaa aagtcatgat ttgataaaaa tcatcaaact caaaaaaaaa ccgctagtat
    13141 attctgaata ttccgaatag ttacgtagat gaaaatactt gtcaccgccg ctacttaatt
    13201 ccggtgggaa attatttatt tccgcataat cagccatgta ttatttgaaa caattagttt
    13261 gtaaataata taaattgata acatatcaaa tacatcaaaa ataccattca taggcattat
    13321 taatatagac atcaatatag caacatcaaa ttccaattag taataagata tgctttttaa
    13381 ttgcatgaaa ataatttcaa atgagcgttt tttgatactt tagagtgttt cctacccttt
    13441 aatatcaccg tgtagagttg atatcactac aacagaaaca tgcatgtcat ttttttactt
    13501 cttttttact acagaaaaat ttatctattt ttctaaacat cggtgaaata ctcataaaag
    13561 gtaactatta tgtctatgcc attaagcaat gcccttcaga gtcaaattat tacagataat
    13621 cacttccttc atcatccaaa agtcgacaat aagttaacac gtgaatatga atatacacgc
    13681 atggatacgg aaaatatcta tcttctgcct cttactcgtg gaaataacca taattacgat
    13741 ggaaaaagcg ttgtcgaaat tagaaaactt aatattggca aacagtcctg gccatttaat
    13801 tatgcgacag atacatgcag agaattcaat ggtattacaa caacaggacg tatgctctat
    13861 cgaaacttga aaatcacctc agctttagac gaaatatatg gtggcatatg taaaaaggcg
    13921 catgctgcta cagagttagc agaaggttta cggctaaatt tatttatgaa gagccctttc
    13981 gatcctgttg aggactatac agttcatgaa ataacattag gccctggtta caatgttcct
    14041 ggttatgccg gaaccacgat aggatatatt tcaacccttc cagcttctca ggcaaaaaga
    14101 tggaccaatg agcagccaag aattgatatc tatattgatc agataataac tgtctcaggg
    14161 gtggcaaatt cttccggatt cgcccttgcc gcattactta atgctaatat tggaatggga
    14221 aatgacccaa taattggtat agaagcctat cctggtaccg cggagatcca tgcaaaaatg
    14281 ggatataacg ttatccccgg tgatgaagat gcgccactca aacgcatgac tctgcaaccg
    14341 tcatctcttc cagaactgtt tgaattaaaa aatggtgaat ggaattatat tggcaaataa
    14401 ccactgagaa gaatgagtac taacattcag gttatataga tatttaaaca ataccctgca
    14461 atttacaaag taatactcat tgcgacttct taatttaaga aagcgcaagg aacgtttacc
    14521 cttgcgctta tcataatcag tcaggcgtcg actttatcca gcggccatga atcaaacaga
    14581 tagccgtcaa aataaatatc gtcaacgttc gagaattcca gcagacgttg cttaacgttt
    14641 tccagatgct gccacattgc cagcttcgcc gctcgggcat cttttttgat taacgcggca
    14701 aggatctgtt tgtgatcgcc caaccactct ttgcgataca ggctgtcatc cagatggctg
    14761 tgcaactgga tccacattgg attgttttcc cgccactgcc aggactgacg gaataactcc
    14821 accagcatgc tgttatgcgt tgcttcagca atggcgagat ggaactgcat gtcaccgctt
    14881 tcgctgctac ccggcgcgct ggaagccagt tcacgctctt ccagttgcaa tgcctgacgc
    14941 attttgacga tatcttcgcg ggtagcctgc agggcggcaa attccgcgat gttgctctca
    15001 agaagctgtc gcgcctgcaa caattcaaag gggccggcat cattgcagac gttggcatcc
    15061 ggactgtctg tgttgtggct gcctgagcta tcaagaacat agataccggc accccggcgc
    15121 acttccacca gccctttgat ctccagcatg atcagcgctt cacgtaccac cgtccgcgtg
    15181 acatcaagca tttctgcaat ttcacgctcc ggcggcagcc gttcgccagg attgtacggc
    15241 gtctttatga tcagatcgcg gatcatcgcc ccgacttcct ggtaaggtct ttgcgcagag
    15301 gtggcagatt tcatggtgtt gtgtccgtta ggtgcggtta atcaaatttt tgccggatgc
    15361 ggcgtgaacg ccttatccgg cctacaacgg gcaattttac ggcccccgtt aatctcaaac
    15421 tataccatta gcactggaag ttagcacgta caggtgggca aaaaaacgaa aactggtcaa
    15481 ccaaatatca gtttgattga ccagtaagtc tgtagggtaa tcagttagtt acagcgcagc
    15541 cacacactcg cgcgcaccgc gttcgcacag ctgctgatat gccgccgtca ccgcgccaac
    15601 aaagtcggca ttctgcggca gatcatcggc aaaaataccg ctcaggccca gcagcgcttt
    15661 cacgcggtct gcgccctgat actgcgcgtt aatcttctgg aactcggcca gcatcgggtc
    15721 gaccacgtca atggcattac cctgctcatc cacgccctgg gtgtaacgca tccagccagc
    15781 cacgcccagc gccaggtgac gccagctgcc gccattttgc aggtgcagac gcaccgggtc
    15841 cagcagacgc tgcggtaact tctggctgcc gtccatcgca atctgccagg tacggtgacg
    15901 cagagacggg ttgctgaaac gctagatcag cagcgtcgca taggccttca ggtccgtacc
    15961 ctccggcata gacagcgttg gcgcttgttc ctgcatcatc agggcaaagg ccgctttgcg
    16021 ataatccggg ttagtcatgg tgtcggcaat agtttcatag ccgccgaggt aaccgaggta
    16081 tgccaggaaa gagtggctgc cgttcagcat acgcagcttc atcatttcga acggcacaac
    16141 gtctgcaacg aactgtgcgc ccactttatc ccagtccggg cgaccattaa cgaagttatc
    16201 ttcaatcacc cactgacgga acggttcgca ggcaatggcg cacgggtcgt aaacacccag
    16261 ctggtcagca atttcctgta aggtttctgg cgtcgccgcc ggaacgatgc ggtcaaccat
    16321 ggtgcacggg aaggtgacgt tctcttcaat ccatgccgcc agctgcgggt cacgtgcctg
    16381 agccagcccc agtaccgcga ccttcgccac atgaccgttt tcacgcacgt tatcgcagga
    16441 catcaccgta aatgctttca gccctttttc acgacgcaga cgcaaggctt cgacgatgta
    16501 accaatcgcg gacttcggcg cagtcgggtt ttctagatcg tgcttgatca gcgggttatt
    16561 gagatccagt tgaccgcttg ccgcatcagc gcagtagcct ttttccgtga ccgttagaga
    16621 gacaatcgcc gtttgcggac gcgccatcgc gttgagaata ccttcgcagc cgtcgatttc
    16681 cggatgcagc gcttctttca tcgaaccgat aattttcagc tcggtgcttt ctgcgccttt
    16741 ttccgctacg gtgtacagca gttgctgttt tttcaggttt tcgatcagca cgcggtcgtt
    16801 gcctggcatc aggttaactt cgcagatgcc ccagtcgctg tcggtgcttt ccagcagatg
    16861 atgggtatac agcgcctgat gtgcgcggtg aaacgccccg caaccgagat gcacaatgcg
    16921 tgattccaga cgagaatgat cccatgacgg acgggcaacc ggcagattgc tgtcaacaat
    16981 agtagtcatc gtaaactcca gaatccgtct tcagagagtg acggcaagga agaaggaacc
    17041 ggcacggcgc gcagccatgc cggtggatat taacggctaa agaaagcgcg ctggatcgcc
    17101 agttcgacac cgcgaacttc ggccaggcct ttcagacgac caattgcgga gtaacctggg
    17161 ttggttttct tcttcaggtc gtccagcatc tgatgaccgt ggtccggacg catcgggatc
    17221 aggtcttctt tgccttccgc tttacgacgg tgttcttctt caacaatcgc tttcaccact
    17281 tcgtacatat caacgtcacc gttcaggtgc gccgcttcgt ggaaggtttt cgggttatct
    17341 tcacgcatgg tggagcgcag atgggtgaag taaatacgcg gaccgaactg cttgatcata
    17401 tcaaccagat cgttgtcagc acgcacgccg taggaaccgg tgcacatggt gaaaccgttc
    17461 gccatgctgt ttacggtatc aaccatccac tgcatatctt caatggtgga aacaatgcgc
    17521 ggcaggccga ggatcgggcg cggcggatcg tccgggtgaa ccgccatacg cacgccaact
    17581 tcttcagcaa ctggaataat cgctttcagg aagacggcaa agttttcgcg cagcttcgct
    17641 ttatcgatat ctttgtacag ctccaggtgc ttacggaact ggtcgagggt atacccttct
    17701 tccgcgcccg gcagaccggc aatgatgtta cgcgtcagac gcgctttgtc ttcatcgctc
    17761 atagtggcga agcgttcagc tgcctgagca atttcttctt cggtgtaatc cgcttccgcg
    17821 cctggacgtt tcaggatatg catttcgaat gcagcgaatt cgatctggtc gaagcgcaga
    17881 gctttggagc cgtctggcag cacgtattcg aggtcagtac gggtccagtc gagcaccggc
    17941 atgaagttgt agcacacggt gcgaatgccg cactgcgcca ggttgcgcag agtctgctga
    18001 tagttagcga tccactgctc atagttgcca gtgtgggttt tgatatcttc gtgaattggt
    18061 acgctttcta cgacagacca caccaggcct gcgtcttcaa cgatcgcctt gcgtttgagg
    18121 atctcttcta cggaccatac ttcgccgttc gggatatggt gcagcgcggt aaccacgcca
    18181 gttgcgcccg cctgacggac atcagctaaa gaaaccagat cgtttgggcc gtaccagcgc
    18241 caggtctgtt ccatgatttt tcctctttca catagtgggt tccacagcaa agagacgcgg
    18301 aaccttggag ttgtttaggt atccggatga acaaccagac cgcagccgtg gcgttgcatc
    18361 ggatgagatg gcgtataagt tctacctttt ggtaagatat atcaacccaa atcctgaaat
    18421 tggttaacca aatcacaaga atttcactct catggttgtt gctgcaaatt gcagcaaaag
    18481 gtaatcgatg gttattgatc agaggatgtg acattcatcg caacaatggt tgaccaattt
    18541 acataacatg tcgcccaaaa taacaacggt tcaaccaggt aaggtaaaac gttatgcatg
    18601 tgcttaacat tctctgggta gtattcggca ttggtctgat gctggtactg acaacgaccg
    18661 caggttcaga cacattcact gcattagcaa tgcctcttag attattttga cctgtcagta
    18721 aaagacacgt tgaaaacctg gggtctgctg gaactggtca actccgtggt tgggctgatt
    18781 attagcaagg tagcgtaaaa gaacaccaga gcctgccaat ggcaggctct gactgatgac
    18841 aaagtctaaa aatgtgcccg gacagtcccc tcgcccctcc ggggagaggg ttagggtgag
    18901 gggaacagac cagcaaagtg cgctttgttt atgccagatg cgacgctgac gcgtcttatc
    18961 tggcctacaa agggctaacg tgcaggtttt tagcttcagg taatattgcg taactgcatt
    19021 agcaatgccc tgtgatttct ttattgataa acaaaagtca cgccaataat cgattgcaca
    19081 ttccctgcag tcacctgccc tccggtacgt gcgtaatttg ccgttaatcc cagacttacc
    19141 gccgaagttc
//
LOCUS       DAJVSY010000077        19086 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.077, whole genome shotgun sequence.
ACCESSION   DAJVSY010000077 DAJVSY010000000
VERSION     DAJVSY010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19086)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19086)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19086
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.077"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(31..2478)
                     /gene="glgP"
                     /locus_tag="OQQ19_002365"
     CDS             complement(31..2478)
                     /gene="glgP"
                     /locus_tag="OQQ19_002365"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen phosphorylase"
                     /protein_id="HCS1803959.1"
                     /translation="MNAPFTYSSPTLSVEALKHSIAYKLMFTIGKDPVVANKHEWLNA
                     TLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTLSNAMLSLGIYEDVQGAL
                     EAMGLNLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNI
                     VNGSQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQEGKKTRWIETEEILGVAYDQ
                     IIPGYDTDATNTLRLWSAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTY
                     SGRELRLRQEYFLVSSTIQDILSRHYQLHKTYDNLADKIAIHLNDTHPVLSIPEMMRL
                     LIDEHQFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYF
                     LKTLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLF
                     ADFAKIFPGRFTNVTNGVTPRRWLAVANPSLSAVLDEHLGRNWRTDLSLLNELQQHCD
                     FPMVNHAVHQAKLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVI
                     TRYNRIKADPDAKWVPRVNIFGGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKV
                     VFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEML
                     DHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRY
                     RDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYELQEEWTAKAMLNIANMGYFSSDR
                     TIKEYADHIWHIDPVRL"
     gene            complement(2497..3930)
                     /gene="glgA"
                     /locus_tag="OQQ19_002366"
     CDS             complement(2497..3930)
                     /gene="glgA"
                     /locus_tag="OQQ19_002366"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HCS1803960.1"
                     /translation="MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAF
                     PDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFA
                     YTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTV
                     HNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYARE
                     ITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAEN
                     KRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVL
                     QEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTL
                     PLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRASLWRF
                     VQRQAMAMDFSWQVAAKSYRELYYRLK"
     gene            complement(3930..5225)
                     /gene="glgC"
                     /locus_tag="OQQ19_002367"
     CDS             complement(3930..5225)
                     /gene="glgC"
                     /locus_tag="OQQ19_002367"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HCS1803961.1"
                     /translation="MVSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPA
                     VHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGWSFFNEEMNEFVDLL
                     PAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKG
                     ARCTVACMPVPIEEASAFGVMAVDENDKIIEFVEKPANPPSMPNDPSKSLASMGIYVF
                     DADYLYELLEEDDRDENSSHDFGKDLIPKITEAGLAYAHPFPLSCVQSDPDAEPYWRD
                     VGTLKAYWKANLDLASVVPELDMYDRNWPIRTYNESLPPAKFVQDRSGSHGMTLNSLV
                     SGGCVISGSVVVQSVLFSRVRVNSFCNIDSAVLLPEVWVGRSCRLRRCVIDRACVIPE
                     GMVIGENAEEDARRFYRSEEGIVLVTREMLRKLGHKQER"
     gene            complement(5243..7216)
                     /gene="glgX"
                     /locus_tag="OQQ19_002368"
     CDS             complement(5243..7216)
                     /gene="glgX"
                     /locus_tag="OQQ19_002368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HCS1803962.1"
                     /translation="MTQLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANGQE
                     HRYDLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQIDG
                     EFKDNPLLHAGHNEPDYRDNAAIAPKCVVVVDHYDWEDDAPPRTPWDSTIIYEAHVKG
                     LTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNY
                     WGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPL
                     FSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFR
                     FDLAAVMGRTPEFRQDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVGNFPPLFAEW
                     NDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDC
                     VCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQG
                     TPMLLAGDEHGHSQHGNNNAYCQDNQLTWLDWSQASSGLTAFTAALIHLRKRIPALVE
                     NRWWEEGDGNVRWLNRYAQPLSTDEWQNGPKQLQILLSDRFLIAINATLEVTEIVLPA
                     GEWHAIPPFAGEDNPVITAVWQGPAHGLCVFQR"
     gene            complement(7213..9399)
                     /gene="glgB"
                     /locus_tag="OQQ19_002369"
     CDS             complement(7213..9399)
                     /gene="glgB"
                     /locus_tag="OQQ19_002369"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching enzyme"
                     /protein_id="HCS1803963.1"
                     /translation="MSDRIDRDVINALIAGHFADPFSVLGMHKTTAGLEVRALLPDAT
                     DVWVIEPKTGRKLAKLECLDSRGFFSGVIPRRKNFFRYQLAVVWHGQQNLIDDPYRFG
                     PLIQEMDAWLLSEGTHLRPYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWD
                     GRRHPMRLRKESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAFEAQMRPETAS
                     LICGLPEKVVQTEERKKANQFDASISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYA
                     KWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVIL
                     DWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNALY
                     WIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQV
                     SGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLT
                     FGILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLL
                     FMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFDPY
                     GFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGKWREILNTD
                     SMHYHGSNAGNGGTVHSDEIASHGRQHSLSLTLPPLATIWLVREAE"
     gene            complement(9672..10775)
                     /gene="asd"
                     /locus_tag="OQQ19_002370"
     CDS             complement(9672..10775)
                     /gene="asd"
                     /locus_tag="OQQ19_002370"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HCS1803964.1"
                     /translation="MKNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA
                     PSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLR
                     MKDDAIIILDPVNQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVAT
                     YQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNF
                     GVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQ
                     AFTIKLKKDVSIPTVEELLAAHNPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRK
                     LNMGPEFLSAFTVGDQLLWGAAEPLRRMLRQLA"
     gene            10967..11560
                     /gene="yhgN"
                     /locus_tag="OQQ19_002371"
     CDS             10967..11560
                     /gene="yhgN"
                     /locus_tag="OQQ19_002371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter YhgN"
                     /protein_id="HCS1803965.1"
                     /translation="MNEIISAAVLLILIMDPLGNLPIFMSVLKHTEPKRRRAIMVREL
                     LIALLVMLVFLFAGEKILAFLSLRAETVSISGGIILFLIAIKMIFPSASGNSSGLPAG
                     EEPFIVPLAIPLVAGPTILATLMLLSHQYPNQMGHLVIALLLAWGGTFVILLQSSLFL
                     RLLGEKGVNALERLMGLILVMMATQMFLDGIRMWMKG"
     gene            complement(11617..12957)
                     /gene="gntU"
                     /locus_tag="OQQ19_002372"
     CDS             complement(11617..12957)
                     /gene="gntU"
                     /locus_tag="OQQ19_002372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate transporter"
                     /protein_id="HCS1803966.1"
                     /translation="MTTLTLVLTAVGSVLLLLFLVMKARMHAFLALMVVSMGAGLFSG
                     MPLDKIAATMEKGMGGPLGFLAVVVALGAMFGKILHETGAVDQIAVKMLKSFGHSRAH
                     YAIGLAGLVCALPLFFEVAIVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLVP
                     GPAPMLLASQMNADFGWMILIGLCAAIPGMIIAGPLWGNFISRYVELHIPDDISEPHL
                     GEGKMPSFGFSLSLILLPLVLVGLKTIAARFVPEGSTAYEWFEFIGHPFTAILVACLV
                     AIYGLAMRQGMPKDKVMEICGHALQPAGIILLVIGAGGVFKQVLVDSGVGPALGEALT
                     GMGLPIAITCFVLAAAVRIIQGSATVACLTAVGLVMPVIEQLNYSGAQMAALSICIAG
                     GSIVVSHVNDAGFWLFGKFTGATEAETLKTWTMMETILGTVGAIVGMIAFQLLS"
     gene            complement(12961..13488)
                     /gene="gntK"
                     /locus_tag="OQQ19_002373"
     CDS             complement(12961..13488)
                     /gene="gntK"
                     /locus_tag="OQQ19_002373"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417894.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HCS1803967.1"
                     /translation="MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHP
                     RRNIEKMASGEPLNDDDRKPWLQALNDAAFAMLRTNKVSLIVCSALKKHYRDLLREGN
                     PNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPL
                     EGVVASTIEVIKKGK"
     gene            complement(13627..14622)
                     /gene="gntR"
                     /locus_tag="OQQ19_002374"
     CDS             complement(13627..14622)
                     /gene="gntR"
                     /locus_tag="OQQ19_002374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001693277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate operon transcriptional repressor GntR"
                     /protein_id="HCS1803968.1"
                     /translation="MKKKRPVLQDVADRVGVTKMTVSRFLRNPEQVSVALRGKIAAAL
                     DELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYG
                     YKPEMEQERLESMLSWNIDGLILTERTHTPRTLKMIEVAGIPVVELMDSQSPCLDIAV
                     GFDNFEAARQMTTAIIARGHCHIAYLGARLDERTIIKQKGYEQAMLDAGLVSYSVMVE
                     QSSSYSSGIELIRQARREYPQLDGVFCTNDDLAVGAAFECQRLGLKVPDDMAIAGFHG
                     HDIGQVMEPRLASVLTPRERMGSIGAERLLARIRGESVTPKMLDLGFTLSPGGSI"
     gene            complement(14846..15541)
                     /gene="yhhW"
                     /locus_tag="OQQ19_002375"
     CDS             complement(14846..15541)
                     /gene="yhhW"
                     /locus_tag="OQQ19_002375"
                     /EC_number="1.13.11.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004213399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quercetin 2,3-dioxygenase"
                     /protein_id="HCS1803969.1"
                     /translation="MIYLRKANERGHANHGWLDSWHTFSFANYYDPNFMGFSALRVIN
                     DDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHS
                     EYNPSSTERLHLYQIWIMPEENGITPRYEQRRFDAVQGKQLVLSPDARDGSLKVHQDM
                     ELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTINGVKASTSDGLAIWDEQAISIHAD
                     SDSEVLLFDLPPV"
     gene            complement(15664..16701)
                     /locus_tag="OQQ19_002376"
     CDS             complement(15664..16701)
                     /locus_tag="OQQ19_002376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709215.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCS1803970.1"
                     /translation="MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQ
                     APIYSHIHFISDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTL
                     AQAKELFALAKSKGLSVTPYQNRRFDSCFLTAKKAIESGKLGEIVEVESHFDYYRPVA
                     ETKPGLPQDGAFYGLGVHTMDQIISLFGRPDHVAYDIRSLRNKANPDDTFEAQLFYGD
                     LKAIVKTSHLVKIDYPKFIVHGKKGSFIKYGIDQQETSLKANIMPGEPGFAADDSVGV
                     PEYVNDEGVTVREEMKPEMGDYGRVYDALYQTITHGAPNYVKESEVLTNLEILERGFE
                     QASPSTVTFAN"
     gene            17033..17521
                     /gene="yhhY"
                     /locus_tag="OQQ19_002377"
     CDS             17033..17521
                     /gene="yhhY"
                     /locus_tag="OQQ19_002377"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS1803971.1"
                     /translation="MSEIVIRHAETRDYEAIRQIHAQPEVYCNTLQVPHPSDHMWQER
                     LADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADFGICVDSRWKNRGVASALMRE
                     MIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMAR
                     VK"
     gene            17758..18957
                     /locus_tag="OQQ19_002378"
     CDS             17758..18957
                     /locus_tag="OQQ19_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000065895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hcp1 family type VI secretion system effector"
                     /protein_id="HCS1803972.1"
                     /translation="MSNIVYLTVTGEQQGSISAGCGTSESTGNRWQSGHEDEIFTFSL
                     LNNINNTGLGSQFHGITFCKLIDKSTPLFINSINNNEQLFMGFDFYRINRFGRLEKYY
                     YIQLRGAFLSAIHHQIIENQLDTETITISYEFILCQHLIANTEFSYLALPENYNRLFL
                     PNSKNQTNNRFKTLNSKAIGRLLAAGGVYNGNIEGFRDTAEKLGGDAIKGYDQILNEK
                     TAGIAIATASILLTKRSNVDTYTEINSYLGKLRGQQKLLDGIDIIEIIYIKRPSKDLA
                     NLRKEFNKTVRKNFLIKLAKTSEASGRFNAADLLRMRKGNVPLNYNVHHKLSLDDGGT
                     NDFENLVLIENEPYHKVFTNMQSRIAKGILVGESKITPWAIPSGSIYPPMKNVMNASH
                     TIKHGAV"
BASE COUNT         4885 a         5052 c         4644 g         4505 t
ORIGIN      
        1 cctttggccc cgttctattt attggtgaac ttacaatctc accggatcga tatgccagat
       61 atgatcggcg tactctttga tagtacggtc agaagagaag tagcccatat tggcaatgtt
      121 cagcatcgct tttgcggtcc actcttcctg aagctcgtag agttcgtcga ctttatcctg
      181 acaatcgaca tagctgcgat aatccgccag aacctgatag tgatcgccga agttgatcag
      241 cgaatcaacc agatcgcgat agcgacccgg atcttccgga ctgaatacac cgctgccgat
      301 ttgcgtcagc acctgatgca gctcctcatc tttctcgtag tattcacgcg gtttgtagcc
      361 ctgacgacgc agttcttcca cttcttccgc tgtgttacca aaaataaaga tattgtcagc
      421 accgacatga tccagcatct cgacattcgc accgtccaac gtaccgatag tcagcgcacc
      481 gttaagcgca aacttcatgt tactggtgcc ggaagcttcc gtccctgcca gcgaaatctg
      541 ttcagacaga tctgccgccg gaatgatcaa ctgcgccagg ctaacgctgt agttcgggat
      601 gaacacgact ttcagcttat cgccaatctg cggatcgttg ttgatcactt tcgctacgtc
      661 attgatcaaa tgaataatgt gcttcgccat gtaataggcc gaagccgcct taccgccaaa
      721 aatattcacg cgcggtaccc acttcgcatc cgggtcggcc ttgatgcggt tatagcgggt
      781 aatcacatgc aacacattca tcaattgacg tttgtattcg tgaatacgtt tgatttgtac
      841 atcgaacaac gcctttggat tcaccaccac attcagctgc tgggcgatat actctgccag
      901 acgctttttg ttctccagct tcgcctgatg cacagcgtga ttaaccattg ggaaatcaca
      961 gtgttgttgc agctcattaa gcaggctaag gtcggtgcgc cagttacggc ccaggtgttc
     1021 gtccagcacg gctgaaagcg atgggttcgc taccgctagc cagcgacgcg gcgtcacacc
     1081 gttggtgacg ttggtgaaac gacccgggaa gattttcgca aagtcggcaa acaacgattg
     1141 caccatcaga ttagagtgca gttccgatac accgttaact ttgtggctca caacaaccgc
     1201 cagccaggcc atacgcacac gacgaccgtt ggattcatca atgatcgacg cccgtcccag
     1261 cagatcggta tcgttcggat actgttcctg caaggttttc aggaaatagt cgttgatttc
     1321 aaagatgatc tgcaggtgac gcggcagaat tttacccagc atatcaaccg gccaggtttc
     1381 cagcgcctcg ctcatcagcg tgtggttagt gtaggagaag acctgacaac acacctcaaa
     1441 cgcgtcgtcc cagctaaatt ggtgctcatc gatcagcaga cgcatcatct caggaatcga
     1501 cagtaccgga tgggtatcat tgagatgaat cgcgatttta tccgccaggt tatcgtaggt
     1561 tttatgcaac tgataatggc ggcttaaaat gtcctgaatg gtcgaggaaa ccagaaagta
     1621 ttcctgacgc aggcgcagct cacgcccgga gtaggtggag tcatccggat acagtacgcg
     1681 agatacgttc tcggagtggt ttttatcttc cactgccgcg aagtagtcac cttggttgaa
     1741 tttaccgagg ttaatttcgc tactggcttg cgcactccac aaacgcaacg tgttggtcgc
     1801 gtcggtgtcg taaccaggga ttatctgatc gtaagcgact cccagaatct cttcggtttc
     1861 aatccagcgc gtttttttac cttcctgctg aatgcgacca ccaaaacgga ctttatagcg
     1921 cgtgttgtgg cgtttgaatt cccacgggtt accgtattcc agccagtagt ctggcgactc
     1981 tttctggcta ccgttaacga tgttctgctt gaacataccg tagtcatagc ggatgccgta
     2041 accgcgcccc ggcaacccta acgtcgccag agaatcaagg aagcaagccg ccagacgtcc
     2101 caggccaccg ttaccgaggc ctgggtcatt ttcttcatca atcagctctt cgagatttaa
     2161 ccccatcgct tccagtgcgc cctgtacatc ttcgtaaatt cctagcgaca acatggcgtt
     2221 ggagagcgta cggccaatca aaaactccat cgacaggtag taaacctgac gagtttcttg
     2281 cgacaactgg gcacggtttg aacgtaacca gcgctccacg agacgatcgc gcacagcaaa
     2341 taacgttgcg ttcagccatt catgtttatt ggcgacgacc gggtcctttc caatcgtaaa
     2401 catcagcttg taagcgatag agtgcttaag agcttctacg ctaagcgtgg gcgatgaata
     2461 tgtaaacgga gcattcatat aggcgtttcc tgaaaactat ttcaagcgat agtaaagctc
     2521 acggtacgac ttcgccgcga cctgccagct aaaatccatt gccatagcct gacgttgcac
     2581 aaaccgccac agtgaagcac gagaccacag tacaaaagca cgtcgaatag cccgtaacag
     2641 cgaccaggca ttactatctt caaagacaaa cccactggcg acgccatctg caaggttctc
     2701 aagagaacag tcagaaaccg tatcagcaag cccaccggtg cgccgcacta acggcagcgt
     2761 accgtacttc aatccataaa gttgcgttaa gccgcacggt tcaaaacggc tgggcaccag
     2821 aatgacgtcc gcgccgccca taatgcgatg cgaaaatgct tcgtgatagc caatctgaac
     2881 gcccacctgg ccggggtatt ccgctgccgc cgcaaggaaa ccttcctgca gcaccggatc
     2941 gcccgcgccg agtagcgcca gctgcccgcc ctgctccaga agacccggta aggcttccag
     3001 caccaggtcg agacctttct ggctggtcag acggctcacc actgcaaaaa gcggcacttt
     3061 atcgtcaacc ttaagcccca ttgcgatttg taactggcgc ttattttccg ctttatcttc
     3121 caacgtatcg cgggtgtaac gcgaggccaa cagtaagtcc gtctctggac tccagatttt
     3181 ctcgtccacg ccgttcagta cgccggaaag acgcccttca cggtgacgct gttgcaacag
     3241 accttccata ccgtaggcaa actgcggttc ggtgatctcg cgagcgtagg ttggactgac
     3301 cgccgtaatg tgatcggcat agtacagacc ggccttcagg aaagagattt gtccgttgaa
     3361 ttccagccca tgaatattaa agaatgacca tggcaattgg atgtcattca tgtgatgtgc
     3421 ataaaacatg ccttgatagg ccaagttgtg cacagtaaac accgacttcg ccggacgccc
     3481 gcgcgccgcc agatacgcag gcgcaaggcc tgcatgccag tcgtgcgcat gcaccacatc
     3541 aggacgccag aatgggtcaa gcccgctggc catttctgcc ccaacccacc ccagcagcgc
     3601 aaaacgcaat acgttgtcgg tataggcaaa taagttggta tcgtgatacg ggcttcccgg
     3661 acgatcatag agatgcggcg cgtcaatcag gtatatgcca accccgttgt aatgaccgaa
     3721 caacagcgtg atatgtccgg cgaaggtatc acgacgggat actacctgcg catcggtcac
     3781 gccacggcga atatcgggaa atgcaggcaa cagtacgcga gcgtcaacgc cgtctgcgat
     3841 ttgtgctgcg ggtaatgccc caataacatc agccagaccg ccggttttaa gcagcgggaa
     3901 catctctgaa catacatgta aaacttgcat tatcgctcct gtttatgccc taacttccgt
     3961 agcatttcgc gcgttaccag cacgatgcct tcttctgaac gatagaaacg acgtgcatct
     4021 tcctctgcgt tttcaccaat caccatgcct tccgggataa cacaagcacg atcgatgacg
     4081 cagcggcgca gacggcacga gcgacctacc catacttccg gtaacaatac ggcggaatca
     4141 atgttgcaga atgaattcac gcgaacgcgc gagaacagaa cggactgcac caccaccgaa
     4201 ccggagatca cacaaccgcc ggataccagt gagttaaggg tcatcccgtg gctaccggag
     4261 cgatcctgca cgaatttcgc tggcggtaat gattcattgt aggtgcgaat tggccaattg
     4321 cgatcgtaca tatccagttc cggcaccaca gaggccagat cgagattcgc tttccagtaa
     4381 gctttcagcg tacccacatc gcgccagtac ggctcggcat ccgggtcgga ttgtacgcaa
     4441 gagagcggga acgggtgcgc ataggccaga ccggcttcgg tgatcttggg aatcaaatct
     4501 ttgccaaagt cgtggctgga gttctcatca cgatcgtctt cttccagcag ttcatacaga
     4561 tagtcggcgt caaagacgta gatacccata ctcgccagag atttgctcgg atcgttcggc
     4621 attgacggtg ggttagcagg tttttcaacg aattcgataa ttttatcgtt ctcatcaacc
     4681 gccataacgc caaatgcgga ggcttcttca atcggtactg gcatacaagc aacggtgcaa
     4741 cgtgcgcctt tttcgacgtg atcgataagc atacgcgagt agtcttgctt gtagatatgg
     4801 tcgcccgcca ggatcaccac gtattccgct ttataacggc ggataatgtc gaggttttgg
     4861 gtgaccgcat ctgcggtgcc gcgataccag ttttcccctt tcattctctg ctgtgctggc
     4921 agcagatcga caaactcgtt catttcttca ttgaagaatg accagccgcg ctgaatgtgc
     4981 tgcaccagag tgtgggactg gtactgggtg atcacgccca tacgacggat cccggagttg
     5041 atgcagttag acagcgcaaa gtcgataatg cggaacttac cgccgaagtg tacggccggt
     5101 tttgctcgct tattggttaa atccttcagg cgggtaccac gtcctcccgc cagtatcagg
     5161 gcaacagatt tcaatggcag ctggcgcgcc aacattaagt gatcgttctt ctctaaacta
     5221 accatgacta actccttttt tatcatctct ggaacacaca caatccgtgt gcaggtccct
     5281 gccagacagc cgtaatcact gggttatcct ctccagcgaa tgggggaatg gcgtgccact
     5341 ccccagcagg taaaacaatc tctgttacct caagcgtggc gttaattgcg atcaaaaagc
     5401 gatccgagag cagaatttgc agctgtttcg gcccgttttg ccactcatcc gtgcttaaag
     5461 gttgagcata tcgatttagc caacggacat tgccatcgcc ttcttcccac cagcgattct
     5521 ccaccaaagc gggaatgcgc ttgcgcagat ggattaacgc ggcggtaaat gcggttaaac
     5581 cactgcttgc ctgcgaccag tccaaccagg ttaattggtt atcctgacag taggcattgt
     5641 tattgccatg ctggctgtga ccatgttcgt caccggccag taacatcggc gtaccctggg
     5701 agagcaacaa cgttgttaac aaggcgtgaa tactgtcgcg ccgccgttca accaggtcaa
     5761 gagaaccgcc taacccttct ttaccatgat tgttactgta attgttgttg gtcccgtcgc
     5821 gattttcttc tccgtttgct tcattgtgtt tatggttgaa gcaaacgcag tcgcgaagcg
     5881 taaaaccgtc atgcgcagtg acgagattaa tcgcggcact cggcagacga ccattacgtt
     5941 taaaaacatc gctggaggca gcaaaacgcc cggcaaacgc ccccagaggc aaatcataat
     6001 gtagccagaa acgacgggca gcatcgcgga aatgatcgtt ccactcggca aacagcggcg
     6061 ggaaatttcc cacctgataa ccaccagggg cgatatccca cggttcagca attaacttca
     6121 cctgcgagag caccgggcag ttctggatag cggtaaacaa cggcgcatcc tgacggaact
     6181 ctggcgtacg gcccatgact gccgccagat caaagcggaa accatcgacg tgacaggttt
     6241 ctacccaata acgcaggcag gcgctggcat aatccaccac cgccggatga ctcaaattga
     6301 gcgtgttgcc gcaaccggtc cagttgtgat aatcgccgtc ttctcttatc caataatagc
     6361 tacggttatc gatcccacgc agtgagaata acgggccgtc gaggtccagt tccgcactat
     6421 ggttgagcac gatatcaaga atgacttcga tacccgcttt atgcagtgct ttgattgcat
     6481 cgcgaaactc atccagcgcc gtttctggcg agcaggcata cgccggatgc agcgcaaaca
     6541 tcgccaccgg gttgtaaccc cagtagttac ttagccccat gcgttgcaga cgtggttcac
     6601 tggcaaactg cgccactggc agcagttcca gcgcggtaat gcccaattgt ttcaaatagt
     6661 tgatcatcac cggatgcccg agggctttat aagtgccacg gatctcgacc ggaatctccg
     6721 ggtgcaagta cgttaatcct ttgacatggg cttcataaat gatggtgctg tcccacggcg
     6781 tgcgcggcgg ggcatcatct tcccagtcat agtgatcaac caccactacg catttcggcg
     6841 caatggcggc gttgtcgcga tagtcaggtt cattatgacc ggcgtgcagc agcgggttat
     6901 ctttaaattc cccgtcaatt tgccgcgcgc aaggatcaat caacaacttc gccgggttaa
     6961 agcgatgccc ctcggcgggt tgccaggggc catgaacgcg ataaccataa cgcaaacccg
     7021 ggcgcgcatc cggcagataa ccgtgccaaa tgtcgccact gtgccctggc aagtcatagc
     7081 gatgttcctg gccattggcg tcaaagacac acagttctac ccgctcggca tgagcggaga
     7141 aaagtgtgaa gttgacgccc tgaccgtcgt aatgcgcgcc gaggggagcg ggtttgccaa
     7201 tggcgagttg tgtcattctg cctcccgaac cagccagata gtggccagcg gtggtagtgt
     7261 caggcttagt gaatgctgac gaccgtggct ggcaatctca tcgctgtgta ccgtgccgcc
     7321 attgcctgca ttactgccgt gatagtgcat ggaatcggta ttgaggattt cacgccattt
     7381 gcctggctga ttaatgccga agcgataatc atgacgcggc accggcgtaa agttactggc
     7441 aacgataatt tcgttaccct ctttatcgcg acgcacaaag atcagcaccg agcgttcttt
     7501 gtcatccacc accagccatt caaagccgta cgggtcaaaa tccagttcat gcattgcttt
     7561 atggtggcgg taggtgaggt tcagatcgcg caccagacgc tggacaccgt ggtgccagtt
     7621 atcgccacct tccaacagat gccagtcgag gctggcgtca tggttccact cacggccctg
     7681 ggcaaattcg ttccccatga acagcagttt cttgcccggg aatgcccaca tccagccata
     7741 gtaggcgcgc aggttagcga atttctgcca tgcgtcgccc ggcatgcggt cgagaatcga
     7801 ttttttaccg tggaccactt catcatgcga caacggcagg acgaagtttt cagtgtagtt
     7861 gtagagaatc ccgaaggtga gtttatcgtg atgatactga cgataaaccg ggtcgagctt
     7921 catgtagtcc agggtgtcat gcatccagcc gaggttccac ttgtaccaga agcccagacc
     7981 gcccatatcc tgcggacgag aaacgccagg gaaatcggta gactcctcag ccattgtcac
     8041 cgcaccggaa acctgctcac caagaatacg gttggtatta cgcaagaatt caatcgcttc
     8101 aagattctcg cgcccgccaa attcgttcgg gatccactcc ccctctttac ggctgtagtc
     8161 gcgataaatc attgacgcca ccgcatcgac gcgcagcgca tcaataccaa aacgttcaat
     8221 ccagtaaagc gcgttaccga cgaggaagtt actgacttca cggcgaccat aattgtagat
     8281 cagcgtattc cagtcctgat gatagccttc gcgcggatcg ctgtgttcat acaagttcgt
     8341 gccatcaaat tcggcaagcg caaagtcatc ggtcgggaag tggcctggca cccagtcgag
     8401 aatcacgttc agacccgctg cgtgtgcggc atcaatgaaa taacggaagt cgtcgcgagt
     8461 accaaaacgg cgggttggtg catacaggcc ggttggctga taaccccaac tgccatcgaa
     8521 gggatgctcg ttaatgggca gtagttcgag gtgggtaaag cccatccatt tagcataagg
     8581 caccagttga tcggccagct cgcggtagct caaccagaaa ttgttatcgg tgtggcgacg
     8641 ccaggagccc aggtgaactt cataaataga gattgacgca tcaaactgat tcgctttttt
     8701 gcgctcttca gtctgtacaa ccttttccgg cagcccgcaa ataagagacg cggtttccgg
     8761 gcgcatttgc gcttcgaagg cataagggtc ggacttcaga cgcaagttgc cattggcatc
     8821 aatcatctcg tatttataga gctgaccgtt atgcgcccca gggataaaca gttcccaaat
     8881 gccgctctct ttacgcagac gcatcgggtg acggcgaccg tcccagtagt tgaattgccc
     8941 aaccaccgag acccgacggg cgtttggagc ccaaacagag aaacgcgtac ctgtgacgcc
     9001 atccatagta tctgcatgcg cgcctaaggt ttcatacggg cgcaggtgag taccttcaga
     9061 taatagccag gcatccattt cctggattag cgggccaaaa cggtaaggat catcaatcag
     9121 gttttgctga ccatgccaga caacagccaa ctgatagcgg aaaaaattct tacgtcgcgg
     9181 aatgacaccg ctaaagaatc cccgtgagtc aagacactcc agttttgcga gtttgcgccc
     9241 ggttttcggt tcaatcaccc acacatcggt agcgtcgggt aaaagggcac ggacttccag
     9301 tcccgcggtg gttttatgca ttcccagtac ggaaaaagga tccgcaaaat ggcctgcaat
     9361 tagcgcgtta atcacgtctc tatcgatacg atcggacatg cttgtcttcc tgttttattg
     9421 tgtcacccca tccaattgga tttttgactt ctggttgtga catttttttg acctgaacgg
     9481 cgcagcactc tgtgcatcct ctctgcgtcg tcctcacttc aggtaaggct gtgaatactc
     9541 atgtattcag ccacccttaa agaatagcca atgctctatt taactcccgg taaatcatga
     9601 aacatctgcg cttactcctg tattacgcac taacaggggc ggcatcgcgc cccagattta
     9661 atgaataaag attacgccag ttgacgaagc atccgacgca gcggctccgc ggccccccac
     9721 agcagctggt cacccacggt aaaggctgac aggaactccg gtcccatatt cagcttacgc
     9781 aggcggccta ccggcgtggt cagcgtgccg gtaacggcag ctggggttag ctcacgcata
     9841 gtgatttccc gatcgttcgg aacgactttc gcccacggat tgtgcgcagc cagcagttct
     9901 tcgacggtcg gaatagacac atcttttttc aatttaatag tgaatgcctg gctgtggcag
     9961 cgcaatgccc cgacacgcac acataaacca tctaccggaa ttacggaaga tgtgttgagg
    10021 atcttgttgg tttccgcctg ccctttccac tcttcgcggc tctgaccgtt atcgagctgt
    10081 ttgtcgatcc acggaatcag gctacccgcc agcggcacgc caaagttatc caccggcagc
    10141 tcaccgctac gggttaaggt tgtgactttg cgttcgatat cgagaatagc agaggacggg
    10201 gtcgcgagtt catctgccac atggccatac agatggccca tctgggttaa taactcacgc
    10261 atatgtcgcg caccaccgcc ggaagcggcc tggtaggttg caacggacac ccaatcaaca
    10321 agatcattgg cgaataaacc acccaacgac atcaacatca ggcttacggt acagttaccg
    10381 ccaacaaaag tcctgatgcc attatttaat ccgtcggtaa tgacgtcctg attgacgggg
    10441 tcaagaatga tgatggcgtc atctttcatg cgcagagacg atgctgcgtc aatccagtaa
    10501 ccttgccatc cgctttcacg aagctttgga tagatttcgt tggtataatc gccgccctga
    10561 caggtcacaa tgatatcgag ggcctttagc gcctccagat caaaggcatc ctgaagtgtg
    10621 ccagtggttc cgccaaaaga cggcgcagcc tggccaagct gagaagtaga aaagaagaca
    10681 gggcgaatgg cgtcgaagtc gcgctcttca accatgcgtt gcatgagaac ggagccgacc
    10741 ataccgcgcc agccgataaa accaacattt ttcataagcg ttttttcctg caaagatgtg
    10801 tgctgtataa atgtgccggt ctcctcttgg cacatctttc accatacaaa aagcagccaa
    10861 agtcgcaagt gaaattaatc aatgatagcg aagccatcag taatgcgact tatcctgctt
    10921 tgttagcaca cagaaagtcc gcggcaatta tcagggaatt tgagttatga atgaaatcat
    10981 ttctgcagca gttttattga tcctgattat ggatccgctc ggaaacctgc ctattttcat
    11041 gtccgtactg aaacatactg aaccgaaaag acggcgggca atcatggtgc gagagttgct
    11101 tattgctctc ctggtgatgc tggtgttcct gtttgcgggt gagaaaattc tggcatttct
    11161 cagcctgcga gcagaaaccg tctccatttc tggcggcatc attctgtttc taatcgccat
    11221 taagatgatt ttccccagcg cttcaggaaa tagcagcggg cttccggcag gtgaagagcc
    11281 atttatcgtg ccgttggcaa ttccgttagt cgccgggccg actattctcg ccacgctgat
    11341 gttgttgtct catcagtacc cgaatcagat gggacatctg gtgattgctc tgctgctggc
    11401 ctggggcggc acctttgtca tcctgctaca gtcttcgcta tttttacgtc tgctgggcga
    11461 gaaaggggtg aacgcacttg aacgcctgat gggattgatt ctggtgatga tggcaaccca
    11521 gatgttcctc gacggcattc gaatgtggat gaaggggtaa cgaggagagt ttttcgaaaa
    11581 gaacccggta gcgtcacaac taccgggcga acaaacttaa ctcaacagct ggaacgcaat
    11641 catcccaacg atggcaccaa cagtgccgag gatggtttcc atcatggtcc aggttttcag
    11701 cgtttcggct tcggtcgcgc cggtaaattt accgaacaac cagaaaccgg cgtcgttaac
    11761 gtggctgaca acaatcgaac caccagcgat acaaatcgac agtgccgcca tttgcgcacc
    11821 ggagtagttc agttgttcaa tgaccggcat caccagcccc accgccgtta aacaggcaac
    11881 ggtggcagac ccctgaatga tgcgcactgc agcggccagc acgaagcagg tgatagcaat
    11941 cggcaggccc atgccggtta acgcttcgcc cagtgccgga cctacgccag agtcaaccag
    12001 cacctgtttg aacacgccgc ctgcaccaat caccagcaga atgatccccg ccggttgtag
    12061 cgcgtgaccg caaatctcca tcactttgtc ttttggcatg ccctgacgca ttgccaggcc
    12121 ataaatcgct accagacaag caaccagaat cgcggtaaat ggatgaccaa taaactcgaa
    12181 ccattcgtaa gcagttgatc cttctggcac aaaacgagcg gcaatggttt tcagccccac
    12241 cagcaccagc ggcaacagga tcagcgacag gctgaatccg aaggacggca ttttgccttc
    12301 gccgagatgc ggttcgctga tgtcgtcagg aatatgcaac tccacgtaac ggctgatgaa
    12361 attaccccac agcggcccgg caataatcat tcccggaatt gccgcacaca gaccaatcag
    12421 gatcatccag ccaaagtcgg cattcatctg cgatgccagc aacatcggcg ctggtccagg
    12481 caccagaaat gccgccgctg ccgccacgcc tgcgaataat gggattacca gcttcaccag
    12541 gttcgtaccg gtgtggcgcg ccattgagaa agcaacgcta atcagcagaa ctatcgccac
    12601 ttcaaagaac agcggtagcg cacagaccaa ccccgcaagg ccgatggcat aatgcgcgcg
    12661 gctgtgaccg aaggatttga gcattttgac ggcaatctga tcgactgcgc cggtttcatg
    12721 taagatcttg ccaaacatag ctcccagggc gacaaccacc gccaggaagc cgagggggcc
    12781 tcccatccct ttttccatcg tcgctgcgat tttatcgagc ggcataccgg aaaaaaggcc
    12841 agcccccatg gacaccacca tcaaagccag gaaagcgtgc atacgcgcct tcatgactaa
    12901 aaacagcagc agtaaaacag accctactgc tgttaaaaca agcgttaatg tagtcactac
    12961 ttatttgcct tttttaataa cctcaatggt gcttgccaca acaccttcca gcggttgatc
    13021 gatatccacc accagtacat cggtttcgtc cgcacccggc tcctgcagcg tttcaaactg
    13081 cgtcaccaac atttgggttt taaagaaatg gcctttgcgc gctttcaagc gactttcaat
    13141 cacatcaaaa tcgcctttca ggtagatgaa agagagattc ggattacctt cacgcagcaa
    13201 gtcgcgatag tgctttttca gtgcagaaca gacgatcagc gacactttat tggtgcgcag
    13261 catagcaaac gcggcgtcgt tcagcgcctg caaccagggt ttgcgatcgt cgtcattcag
    13321 cggttcgcca gacgccattt tttcgatatt gcgccgtgga tggaggaaat caccatcaag
    13381 aaacgcggca tgaagttgat gcgccacttc actggcgacc gcagatttgc cgctgcccga
    13441 tacgcccatc aagacgtaaa tgtggtgatc atggttagtc gtgctcaaag tggtgccccc
    13501 acaatacaag aattaaaaat gttacgggta actgttatcg gtaacattgt ccagccggac
    13561 aatatcagaa gcaatatcca tccgtgcctt aagtgtataa gtgtgagcta cttcaaattt
    13621 gtaggcttaa atagatccgc ccggtgacaa ggtgaaacct aaatctaaca ttttcggtgt
    13681 cacagattcg ccacgaatac gcgccagcag gcgttcagcg ccaatactgc ccatccgctc
    13741 acgcggcgtc agcacgctcg ctaaccgcgg ctccatcacc tggccaatgt catgaccgtg
    13801 gaaaccggca atcgccatat cgtcaggaac cttcaatccc agacgctgac attcaaacgc
    13861 cgcgccgacc gccaggtcat cgttggtaca gaacacgcca tccagctgcg gatattcccg
    13921 ccgcgcctgg cgaatcagtt caataccgga agagtaagaa gaagattgct caaccatcac
    13981 gctatacgac accagacctg catccagcat cgcctgttcg tatcccttct gtttgatgat
    14041 agtacgttcg tcgagacgcg cgccgagata ggcaatgtgg caatgcccgc gagcaataat
    14101 ggcggtggtc atctggcgtg ccgcttcaaa gttatcaaaa ccgacggcga tatcgaggca
    14161 cggcgactgg ctgtccatga gttccaccac cgggatcccc gccacttcaa tcatctttaa
    14221 ggtgcgcggc gtgtgggtac gttcggtgag gatcagtccg tcgatattcc atgagagcat
    14281 ggattcgaga cgttcttgct ccatttccgg tttataaccg tagtgagcca gcatggtctg
    14341 ataaccgtgc gcgtcggtga cgctttcgat tccgcgtaat acttccgcga aaacctggtt
    14401 ggtgagagaa ggtaacagga cgccaatcgc ccggctggtg gcgttagaga ggatatcggg
    14461 cgcacgattg ggaatatagc ccagttcatc aagagcggcg gcaatcttgc cgcgtagagc
    14521 gacggaaacc tgctccgggt tgcgtaaaaa acggctgacc gtcattttgg tcacgcctac
    14581 acggtcagcc acatcctgaa gtacgggtct tttctttttc atcgtcctga aggtacaaaa
    14641 gagatagatt ctcttagttt aacacggacg catcagaacc ttcccgggga aaacagtgct
    14701 tgtttacaat tattagatat acactaaatc aattgcatcg cattgtgcta acgacgcggc
    14761 aaaaccccgg aagcgtgcat cagcacgcga ccggagcgag cgaggaagcc tgcaaaaagg
    14821 caggcttcaa agatgccgtt gagttttaaa ccggcggcag atcgaacagt aacacttcgc
    14881 tgtcgctatc cgcatggatg gagattgcct gctcatccca gattgccaga ccatcgctgg
    14941 tcgaggcttt cacgccgtta atggtgacat tgcctttcac cacctggatc cagacgcggc
    15001 gttcagcggc aatctgatgc accgactgct catctttcag caacgcccag cggtacagtt
    15061 ccatatcctg atgcactttc aatgaaccat ctcgcgcatc cggcgagagc accagctgtt
    15121 tgccctgtac ggcatcgaag cgacgctgtt cataacgcgg cgtaataccg ttttcttcag
    15181 gcatgatcca gatctgatac agatgcagac gctcggtgct gcttgggttg tactctgagt
    15241 gacgaatacc cgtacccgca ctcataatct ggaactcacc cgccggaacc tgctctttat
    15301 tgcccatgct gtcctgatgc tcaacagtac cttccagcac gtaggtcaaa atttccatat
    15361 ctttatgcgg gtgagtgccg aagccctgcc ctgcttcaat cacgtcgtcg ttaatcacgc
    15421 gcagcgcgga gaagcccata aagttcggat cgtaatagtt ggcaaaagag aaagtatgcc
    15481 aggagtccag ccagccatga tttgcatgac cacgttcatt tgctttgcgt aagtagatca
    15541 tttgtattcg ccccctgaat gatttcgatg ggcttagtgt ggacccgatc tgcctgggat
    15601 gatagagggt gaaaattgcc ccctctgttc aaaaaaattg aactattcga ggggccatca
    15661 aacttaattc gcgaaagtca ctgtggaggg agaggcttgc tcaaatccgc gttcaaggat
    15721 ttccagattg gtaagaactt cagattcctt gacgtaattt ggcgcaccgt gggtgatggt
    15781 ttgatacaac gcatcataaa cgcgcccgta atcgcccatc tccggcttca tctcttctct
    15841 gaccgtcacg ccctcgtcat tgacatactc cggcacaccg accgaatcat ccgctgcgaa
    15901 tcccggttcg cccggcataa tattagcctt caggctggtt tcctgctggt cgataccgta
    15961 tttaataaac gaacctttct taccgtgaac gataaatttc ggataatcga ttttcaccag
    16021 atggctggtt ttgacgatgg ctttcaggtc gccataaaac agttgcgctt caaaggtgtc
    16081 gtcaggattg gctttattac gcaggctgcg gatgtcataa gcgacgtgat ccgggcgacc
    16141 gaacagagaa ataatctggt ccatcgtatg cacaccaagg ccataaaacg cgccatcctg
    16201 cggcagccca ggtttggttt ctgccaccgg gcggtaatag tcaaaatggc tttccacttc
    16261 aacaatctct cccaacttgc cactttcaat cgcttttttc gctgtcagga agcaggagtc
    16321 aaagcgacga ttctgatacg gcgtgacgct cagccctttg cttttcgcca acgcaaacag
    16381 ctccttcgcc tgggcaagcg tcggggtgaa cggtttttcg accagcacat ttttcccggc
    16441 ttccagcgcg cgtttcgcat actcgaaatg gctgtccgcg tgggtgcaga caacaaccag
    16501 cttaacatcg ggatcgttta gtacttcgtc gagatcgctg atgaaatgga tatgggaata
    16561 aatgggagcc tgttcttccg gcttcgcatg gcgacgaaaa atatgcgcga catgccagct
    16621 atccttgcgg ttaagtacat acggcagatg gtaacgggtg gtgcttttgc cgaagccaat
    16681 aaaggcgcag ttgatgacca tgatttcgtc ctttttaagg tggttattta caccttagcg
    16741 caaagcggac gtggttccta ctggagtgcg cataacgaac acaagcactc ccgtggataa
    16801 attgagaacg aaagatcaaa aaaaagccag cacccggctg gctaagtaat actggaagca
    16861 atgtgagcaa tgtcgtgctt tcaggttctc cgcgagggtc ttcctgatcg cgagacaata
    16921 ataatcattc tcattcgcac ttgtccaaca ctttttgcaa aaaaatgcat ttgactcgca
    16981 tttgaaagtc aatgatgttg aaagggacat ttaccccaaa gaggacaaag gaatgagtga
    17041 gatagtaata cgccacgcag aaacacggga ttacgaggcc atcaggcaga ttcacgccca
    17101 gccggaggtg tattgcaaca cactacaggt gcctcatcct tccgatcata tgtggcagga
    17161 gcgactcgcc gatcgtcccg gcatcaagca actcgtcgcc tgtattgatg gagacgtcgt
    17221 gggccatctc accattgacg tgcaacagcg cccacgccgc agtcatgttg ccgattttgg
    17281 tatctgtgtc gactctcgtt ggaagaaccg cggcgtcgcc agcgccctga tgcgagagat
    17341 gattgaaatg tgcgacaact ggttgcgggt agatcgcatt gaactaaccg tgtttgtcga
    17401 taacgccccg gcaattaagg tctataaaaa atacggcttt gaaattgaag ggactggtaa
    17461 gaagtacgca ttgcgtaatg gtgaatatgt cgatgcatat tatatggcgc gggtgaagta
    17521 agatagtgcc ctttttctga gatggaaaaa gggtgtcatt caaaatcgac ataccttcct
    17581 ttaaggtatt tatttaccca atacatatat tgagatttaa ctcataatta cttcctaaag
    17641 tgtaatattt tattttttaa tatatacgcc tacaatttcc tggagtaaat aaataacaat
    17701 taacaagcat aatattgcca ttgataaaat agcatgccat aaaaggactt ttcagggatg
    17761 agtaatattg tttacctgac agtaacggga gaacaacaag gaagcatctc cgcaggttgt
    17821 gggacttctg agtctacagg taatcgttgg cagagcgggc atgaggatga aatatttaca
    17881 ttctcactct taaataatat taataatacg gggcttggtt cacagttcca tggtataaca
    17941 ttttgtaaat taattgataa aagcactcca ttatttatta attccattaa caataatgaa
    18001 caattattta tgggatttga cttctatcga ataaatagat ttggtagatt ggaaaagtat
    18061 tattatatac aactaagagg cgctttttta tcggctattc atcaccagat cattgaaaac
    18121 caactggata cagaaacaat aactattagt tatgaattta tcctctgtca acatcttatc
    18181 gcaaataccg agttcagcta tttggcactc cctgaaaatt ataaccgatt gtttttacca
    18241 aattcaaaaa accaaacaaa taatcgtttc aaaacgttaa acagcaaagc tattggcagg
    18301 ctacttgctg ctggtggcgt atacaatggg aacattgaag gattcagaga tactgcggaa
    18361 aaactgggtg gagatgcaat aaaaggctat gatcaaatac taaatgaaaa aacagcgggc
    18421 atagcgatag caacagcatc tattctttta acaaagcgtt ctaatgttga tacatataca
    18481 gaaataaata gttacttagg caaacttaga ggtcaacaaa aacttcttga tggtatagac
    18541 ataatagaaa taatatacat taagagacct tcaaaagact tagctaactt acgaaaggag
    18601 tttaataaaa ctgtaagaaa aaattttctt atcaaacttg caaaaacctc cgaagcatct
    18661 ggaagattca acgccgcaga ccttttaaga atgagaaagg gcaatgttcc tctaaattat
    18721 aatgttcacc ataaactatc tctagatgat ggtggtacta atgatttcga aaatttagta
    18781 ttaatcgaaa acgaaccata tcataaagtt tttactaaca tgcaatcacg aatagctaag
    18841 ggaatattag taggtgaaag caaaatcact ccctgggcca ttccatctgg ctcaatttat
    18901 cctcccatga aaaatgtaat gaacgcatcc cacacaatta aacacggagc agtatgatgg
    18961 ttaaaagggt gaaactggca ggtgtggagc ctcgcagatt tccggcatca tagtgcccaa
    19021 tacgggatgc ataaagctcc ctcagactgg aaactccaca aatgaaatat acaccggttg
    19081 gcgttg
//
LOCUS       DAJVSY010000078        18503 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.078, whole genome shotgun sequence.
ACCESSION   DAJVSY010000078 DAJVSY010000000
VERSION     DAJVSY010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 18503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18503
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.078"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..891
                     /locus_tag="OQQ19_002379"
     CDS             <1..891
                     /locus_tag="OQQ19_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1803973.1"
                     /translation="WFNIKERGRPMGFFNAASTIGVAVSPPILAAMMLVMGWRGMFIT
                     IGVLGIFLAIGWYMLYRNREHVELTAVEQAYLNAGSVNARRDPLSFAEWRSLFRNRTM
                     WGMMLGFSGINYTAWLYLAWLPGYLQTAYNLDLKSTGLMTAIPFLFGAAGMLVNGYVT
                     DWLVKGGMAPIKSRKICIIAGMFCSAAFTLIVPQATTSMTAVLLIGMALFCIHFAGTS
                     CRGLIHVAVASRMTASVGSIQNFASFICASFAPIITGFIVDTTHSFRLALIICGCVTA
                     AGALAYIFLVRQPINDPRKD"
     gene            complement(940..2595)
                     /gene="tsr"
                     /locus_tag="OQQ19_002380"
     CDS             complement(940..2595)
                     /gene="tsr"
                     /locus_tag="OQQ19_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HCS1803974.1"
                     /translation="MLKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQ
                     TIRQQQSTLNGSWVALLQTRNTLNRAGIRYMMDQNNIGSGSTVAELMQSASISLKQAE
                     KNWADYEALPRDPRQSTAAAAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQ
                     DGFEKQYVAYMEQNDRLYDIAVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASL
                     VAPMNRLIDSIRHIAGGDLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANA
                     IYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSAS
                     ETAQRGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQ
                     GRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVT
                     RVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRL
                     TEAVAVFRIQQQQRETSAVVKTVTPAAPRKMAVADSEENWETF"
     gene            complement(2714..3160)
                     /gene="hpaR"
                     /locus_tag="OQQ19_002381"
     CDS             complement(2714..3160)
                     /gene="hpaR"
                     /locus_tag="OQQ19_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoprotocatechuate degradation operon regulator
                     HpaR"
                     /protein_id="HCS1803975.1"
                     /translation="MHDSLTIALLQAREAAMSYFRPIVKRHNLTEQQWRIVRILAESP
                     SMDFHDLAYRACILRPSLTGILTRMERDGLVLRLKPINDQRKLYISLTKEGQALYNRA
                     QTQIEEAYRQIEAQFTAEKMQQLTHLLEEFIALGNSRQEAIPGDNE"
     gene            3432..4721
                     /locus_tag="OQQ19_002382"
     CDS             3432..4721
                     /locus_tag="OQQ19_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate degradation bifunctional
                     isomerase/decarboxylase"
                     /protein_id="HCS1803976.1"
                     /translation="MKGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNT
                     VIGCGEPIPFPQGEKVLSGATVALIVGKTATKVREEDAAEYIAGYALANDVSLPEESF
                     YRPAIKAKCRDGFCPIGETVALSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSAL
                     SEFATLNPGDAILLGTPQARVEIQPGDRVRVLAEGFPPLENPVVDEREVTTRKSFPTQ
                     PHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYE
                     AELVVVIGKQARNVSEADAMDYVAGYTVCNDYAIRDYLENCYRPNLRVKSRDGLTPML
                     STIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIA
                     TGTPKGLSDVVPGDEVVVEVEGVGRLVNRIVSEDTAK"
     gene            4718..6184
                     /gene="hpaE"
                     /locus_tag="OQQ19_002383"
     CDS             4718..6184
                     /gene="hpaE"
                     /locus_tag="OQQ19_002383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-carboxymethyl-2-hydroxymuconate semialdehyde
                     dehydrogenase"
                     /protein_id="HCS1803977.1"
                     /translation="MKKVNHWINGKNVAGNDYFQTTNPATGEVLADVASGGEAEINQA
                     VAAAKEAFPKWANLPMKERARLMRRLGDLIDQNVPEIAAMETADTGLPIHQTKNVLIP
                     RASHNFEFFAEVCQQMNGKTYPVDDKMLNYTLVQPVGVCALVSPWNVPFMTATWKVAP
                     CLALGNTAVLKMSELSPLTADRLGELALEAGIPAGVLNVVQGYGATAGDALVRDHDVR
                     AVSFTGGTATGRNIMKNAGLKKYSMELGGKSPVLIFEDADIERALDAALFTIFSINGE
                     RCTAGSRIFIQQSIYPEFVKRFAERANRLRVGDPNDPNTQVGALISQQHWEKVSGYIR
                     LGIEEGATLLAGGPDKPSDLPAHLKGGNFLRPTVLADVDNRMRVAQEEIFGPVACLLP
                     FKDEAEGLRLANDVEYGLASYIWTQDVSKVLRLARGIEAGMVFVNTQNVRDLRQPFGG
                     VKASGTGREGGEYSFEVFAEMKNVCISMGDHPIPKWGV"
     gene            6186..7037
                     /gene="hpaD"
                     /locus_tag="OQQ19_002384"
     CDS             6186..7037
                     /gene="hpaD"
                     /locus_tag="OQQ19_002384"
                     /EC_number="1.13.11.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxyphenylacetate 2,3-dioxygenase"
                     /protein_id="HCS1803978.1"
                     /translation="MGKLALAAKITHVPSMYLSELPGKNHGCRQGAIDGHKEISKRCR
                     EMGVDTIIVFDTHWLVNSAYHINCADHFEGVYTSNELPHFIRDMTYNYEGNPELGQLI
                     ADEALKLGVRAKAHNIPSLKLEYGTLVPMRYMNEDKHFKVVSISAFCTVHDFADSRKL
                     GEAILKAIEQYDGTVAVLASGSLSHRFIDDQRAEEGMNSYTREFDRQMDERVVKLWRE
                     GQFKEFCNMLPEYADYCYGEGNMHDTVMLLGMLGWDKYDGKVEFITELFPSSGTGQVN
                     AVFPLPA"
     gene            7047..7427
                     /locus_tag="OQQ19_002385"
     CDS             7047..7427
                     /locus_tag="OQQ19_002385"
                     /EC_number="5.3.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-carboxymethyl-2-hydroxymuconate
                     Delta-isomerase"
                     /protein_id="HCS1803979.1"
                     /translation="MPHFIVECSDNIREEADLPGLFAKVNPTLAATGIFPLAGIRSRV
                     HWVDTWQMADGQRDYAFVHMTLKIGAGRSLESRQQAGEMLFELIKTHFAALMESRLLA
                     LSFEIEELHPTLNFKQNNVHALFK"
     gene            7538..8341
                     /gene="hpaH"
                     /locus_tag="OQQ19_002386"
     CDS             7538..8341
                     /gene="hpaH"
                     /locus_tag="OQQ19_002386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710089.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-hepta-3-ene-1,7-dioic acid hydratase"
                     /protein_id="HCS1803980.1"
                     /translation="MFDKHTHTLIAQRLDQAEKQREQIRAISLDYPEITIEDAYAVQR
                     EWVRLKIAEGRTLKGHKIGLTSKAMQASSQISEPDYGALLDDMFFHDGSDIPTDRFIV
                     PRIEVELAFVLAKPLRGPNCTLFDVYNATDYVIPALELIDARCHNIDPETQRPRKVFD
                     TISDNAANAGVILGGRPIKPDELDLRWISALMYRNGVIEETGVAAGVLNHPANGVAWL
                     ANKLAPYDVQLEAGQIILGGSFTRPVPARKGDTFHVDYGNMGSISCRFV"
     gene            8352..9140
                     /gene="hpaI"
                     /locus_tag="OQQ19_002387"
     CDS             8352..9140
                     /gene="hpaI"
                     /locus_tag="OQQ19_002387"
                     /EC_number="4.1.2.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-2-oxoheptanedioate aldolase"
                     /protein_id="HCS1803981.1"
                     /translation="MENSFKAALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLSDGE
                     HAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAR
                     EAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQI
                     LDVEGVDGVFIGPADLSADMGYAGNPQHPEVQAAIEQAIVQIRESGKAPGILIANEQL
                     AKRYLELGALFVAVGVDTTLLARAAEALAARFGAQATAVKPGVY"
     gene            9315..10691
                     /gene="hpaX"
                     /locus_tag="OQQ19_002388"
     CDS             9315..10691
                     /gene="hpaX"
                     /locus_tag="OQQ19_002388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate permease"
                     /protein_id="HCS1803982.1"
                     /translation="MSDTSPAIPESIDPANQHKALTAGQQAVIKKLFRRLIVFLFVLF
                     IFSFLDRINIGFAGLTMGRDLGLSATMFGLATTLFYAAYVIFGIPSNIMLSIVGARRW
                     IATIMVLWGIASTATMFATGPTSLYVLRILVGITEAGFLPGILLYLTFWFPAYFRARA
                     NALFMVAMPVTTALGSIVSGYILSLDGVMALKGWQWLFLLEGFPSVLLGVMVWFWLDD
                     SPDKAKWLTKEDKKCLQEMMDNDRLTLVQPEGAISHHAMQQRSMWREIFTPVVMMYTL
                     AYFCLTNTLSAISIWTPQILQSFNQGSSNITIGLLAAVPQICTILGMVYWSRHSDRRQ
                     ERRHHTALPYLFAAAGWLLASATDHNMIQMLGIIMASTGSFSAMAIFWTTPDQSISLR
                     ARAIGIAVINATGNIGSALSPFMIGWLKDLTGSFNSGLWFVAALLVIGAGIIWAIPMQ
                     SSRPRATP"
     gene            10701..11587
                     /gene="hpaA"
                     /locus_tag="OQQ19_002389"
                     /pseudo
     CDS             10701..11587
                     /gene="hpaA"
                     /locus_tag="OQQ19_002389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224927.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate catabolism regulatory
                     protein HpaA"
     gene            11838..13400
                     /gene="hpaB"
                     /locus_tag="OQQ19_002390"
     CDS             11838..13400
                     /gene="hpaB"
                     /locus_tag="OQQ19_002390"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000801462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     oxygenase component"
                     /protein_id="HCS1803983.1"
                     /translation="MKPEDFRASTQRPFTGEEYLKSLQDGREIYIYGERVKDVTTHPA
                     FRNAAASVAQLYDALHKPEMQDSLCWNTDTGSGGYTHKFFRVAKSANDLRQQRDAIAE
                     WSRLSYGWMGRTPDYKAAFGCALGANPGFYGQFEQNARNWYTRIQETGLYFNHAIVNP
                     PIDRHLPTDKVKDVYIKLEKETDAGIIVSGAKVVATNSALTHYNMIGFGSAQVMGENP
                     DFALMFVAPMDADGVKLISRASYEMVAGATGSPYDYPLSSRFDENDAILVMDNVLIPW
                     ENVLIYRDFDRCRRWTMEGGFARMYPLQACVRLAVKLDFITALLKKSLECTGTLEFRG
                     VQADLGEVVAWRNTFWALSDSMCSEATPWVNGAYLPDHAALQTYRVLAPMAYAKIKNI
                     IERNVTSGLIYLPSSARDLNNPQIDQYLAKYVRGSNGMDHVQHIKILKLMWDAIGSEF
                     GGRHELYEINYSGSQDEIRLQCLRQAQSSGNMDKMMAMVDRCLSEYDQNGWTVPHLHN
                     NDDINMLDKLLK"
     gene            13418..13930
                     /locus_tag="OQQ19_002391"
     CDS             13418..13930
                     /locus_tag="OQQ19_002391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase reductase
                     subunit"
                     /protein_id="HCS1803984.1"
                     /translation="MQLDEQRLRFRDAMASLSAAVNIITTEGDAGQCGITATAVCSVT
                     DTPPSLMVCINANSAMNPVFQGNGKLCVNVLNHEQELMARHFAGMTGMAMEERFSLSC
                     RQKGPLAQPVLKGSLASLEGEIRDVQAIGTHLVYLVEIKNIILSAEGHGLIYFKRRFH
                     PVMLEMEAAI"
     gene            14323..16473
                     /gene="btsT"
                     /locus_tag="OQQ19_002392"
     CDS             14323..16473
                     /gene="btsT"
                     /locus_tag="OQQ19_002392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313340.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate/proton symporter BtsT"
                     /protein_id="HCS1803985.1"
                     /translation="MDTKKLFKHIPWVILGIIGAFCLAVVALRRGEHVSALWIVVASV
                     SVYLVAYRYYSLYIAQKVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFAAIAGAG
                     PLVGPVLAAQMGYLPGTLWLLAGVVLAGAVQDFMVLFISSRRNGASLGEMIKEEMGPV
                     PGTIALFGCFLIMIIILAVLALIVVKALAESPWGVFTVCSTVPIALFMGIYMRFIRPG
                     RVGEVSVIGIVLLVASIYFGGVIAHDPYWGPALTFKDTTITFALIGYAFVSALLPVWL
                     ILAPRDYLATFLKIGVIVGLALGIVVLNPELKMPAMTQYIDGTGPLWKGALFPFLFIT
                     IACGAVSGFHALISSGTTPKLLANETDARFIGYGAMLMESFVAIMALVAASIIEPGLY
                     FAMNTPPAGLGITMPNLHEMGGENAPIIMAQLKDVTAHAAATVSSWGFVISPEQILQT
                     AKDIGEPSVLNRAGGAPTLAVGIAHVFHKVLPMADMGFWYHFGILFEALFILTALDAG
                     TRSGRFMLQDLLGNFIPFLKKTDSLVAGIIGTAGCVGLWGYLLYQGVVDPLGGVKSLW
                     PLFGISNQMLAAVALVLGTVVLIKMKRTQYIWVTVVPAVWLLICTTWALGLKLFSTNP
                     QMEGFFYMASQYKEKIANGTDLTAQQIANMNHIVVNNYTNAGLSILFLIVVYSIIFYG
                     FKTWLAVRNSDKRTDKETPYVPIPEGGVKISSHH"
     gene            16604..16807
                     /locus_tag="OQQ19_002393"
     CDS             16604..16807
                     /locus_tag="OQQ19_002393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HCS1803986.1"
                     /translation="MFGNLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMSY
                     EEFFRERQNARYGGDGKGGMRCC"
     gene            16818..17774
                     /gene="yjiA"
                     /locus_tag="OQQ19_002394"
     CDS             16818..17774
                     /gene="yjiA"
                     /locus_tag="OQQ19_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313338.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HCS1803987.1"
                     /translation="MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS
                     VDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMA
                     DPGPIIQTFFSHEILCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKT
                     DVAGEAEKLRERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIA
                     DKQNDISSIVVELDYPVDISEVSRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGV
                     QRLYSADWDRPWGDEKPHSTMVFIGIQLPEDEIRAAFAGLKK"
     gene            complement(17876..>18503)
                     /locus_tag="OQQ19_002395"
     CDS             complement(17876..>18503)
                     /locus_tag="OQQ19_002395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001569102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HCS1803988.1"
                     /translation="PGSAILNVWLTSMLKRTVVAAVPMPFDKWYSASGYETTQDGPTG
                     SLNISVGAKILYEAVQGDKSPIPQAVDLFAGKPQQEVVLAALEDTWETLSKRYGNNVS
                     NWKTPAMALTFRANNFFDVPQAAAEETRHQAEYQNRGTENDMIVFSPTTSDRPVLAWD
                     VVAPGQSGFIAPDGTVDQHYEDQLKMYENFGRKSLWLTKQDVEAHKES"
BASE COUNT         4226 a         5123 c         4939 g         4215 t
ORIGIN      
        1 tggttcaaca tcaaagagcg cggacgcccg atgggcttct tcaacgcagc ttctaccatt
       61 ggcgttgccg taagcccacc gattctggcg gcgatgatgc tggtgatggg ctggcgcggg
      121 atgtttatta ccattggtgt actggggatt tttctcgcca tcggctggta tatgctctat
      181 cgcaaccgcg agcacgtaga actgactgcc gttgagcaag cttatctcaa tgcaggtagc
      241 gtcaatgccc gccgagatcc gctcagtttt gccgaatggc gcagcctgtt ccgtaaccgt
      301 acaatgtggg gaatgatgct cggattcagt ggcatcaact acactgcgtg gctgtatctg
      361 gcctggcttc ctggttacct gcaaacagcc tataacctgg atttaaaaag cacagggttg
      421 atgacggcta tccctttcct gtttggggct gccgggatgc tggtcaacgg ttacgttacc
      481 gactggctgg tcaaaggggg aatggctccg attaaaagcc gtaagatctg cattattgcc
      541 gggatgttct gttctgccgc ctttacgctg atagtaccac aagcgacaac atccatgacg
      601 gcggttctgc tgattggcat ggcactgttc tgtattcact ttgccggaac atcctgccgg
      661 ggcttgatcc acgtcgcagt tgcttctcgc atgactgcgt cggtgggcag tatccagaac
      721 tttgccagct tcatctgcgc ctcttttgcg ccgatcatta ctggttttat tgttgatacc
      781 acccactcat tccgtctggc actaatcatc tgcggttgcg tcaccgcagc gggggcactg
      841 gcgtacatct tcctggttcg tcagccgatc aacgacccac gtaaagatta atctccttat
      901 gcccgataac attttgctta tcgggcattt tcatggcgat taaaatgttt cccagttctc
      961 ctcgctatct gccacggcca ttttacgcgg cgcagctggc gtcacggttt ttaccacagc
     1021 cgatgtttca cgctgctgtt gctgaatccg gaacactgcc actgcttcgg tcaggcgact
     1081 ggcctgctct tccagcgcgg cggcggcagc ggcagactct tccaccagcg cggcgttctg
     1141 ttgagttacc cggtccatct cagcaaccgc taagccaacc tgatcgatac cacggctctg
     1201 ctcatcagaa gcagaagcaa tttcgcccat aatgtccgtc acgcgggtca cggcgctgac
     1261 aatctccgcc attgtttccc cggcgctttc gaccagcgta gagccaacat ccactttccc
     1321 caccgagtct tcaatcaggc ttttaatttc acgagccgcc tgggcgctgc gctgggccag
     1381 attacgcact tctcccgcga ccaccgcaaa accgcgccct tgctcacccg cacgcgcagc
     1441 ctcaaccgcc gcgttcaaag ccagaatatt ggtctggaag gcaatgccgt caattacgct
     1501 gataatatcg gcgattttct gcgaactggt ggagatatcg cgcatagtct gcaccacgtt
     1561 atctaccact ttgccgccgc gttgcgccgt ttcagaagca cttaacgcca gatggctggc
     1621 ctggcgcgca ttttcggcgt tctgcttcac cgttgcggtc agttgctcca tgctggctgc
     1681 cgtctcttcc agcgaagcgg cctgttgctc ggtgcgcgaa gagagatcgt tattgccggt
     1741 ggcgatttcg ctggcaccgc tatagatggc attggccccg ttgcgcacat caccgacggt
     1801 acgcatcagc tctccctgca tatggcgcaa actctctgcc agttgcccca tctcattaga
     1861 gccatccacc tcaatcggtt tcaccagatc gccgcctgca atatgacgaa tgctgtcaat
     1921 caggcgattc attggcgcta ccagcgaggc tttaataccg aaccagacgg cgaagatgac
     1981 cgccagtacg acgatcatca cgcccaccag aatccacatc gcctggctgt aggaggcatt
     2041 gttatcgctg acggcgatat catagagccg atcgttttgc tccatgtaag ccacatactg
     2101 cttctcgaaa ccgtcctgat atccctgggt cggctgatca aagaactcgt tgattttgcc
     2161 tgcacctaac agttggatca gctccgccag cgcattgtga taaatatcgt aattacgttt
     2221 gatctctgcc gctgcggcgg tgctctgacg cgggtcacgc ggcaacgctt cgtaatccgc
     2281 ccagtttttt tccgcctgtt tcagcgaaat actggcactc tgcatcagct cagcaacggt
     2341 tgaaccgcta ccaatattat tctgatccat catgtagcgg atacccgcgc ggttgagggt
     2401 gttacgcgtc tgcaacaacg cgacccagct gccattcagc gtggattgct gctggcgaat
     2461 ggtttgtaaa acagtgaaat tttctttgtc attctttaag gcattaaaga acagaccgcc
     2521 tgatgtcagt tgtaaaaggc caaaaacggc caaaaccagc agtaagctgg tcacgatctt
     2581 gatacgtttt aacatggttt ctctttcctg tggaccgatg caagattttc ggcttggaaa
     2641 gcaaaaactt tatgaaaagg tgtaacccgc catccatgga aaaaccaggc gctggttatc
     2701 agatactaaa aagttattca ttatcgcccg ggatggcttc ttgtcgggaa ttgcccagag
     2761 caataaattc ctctaacaga tgggttaact gttgcatttt ctcggcagta aactgagctt
     2821 caatctgccg ataggcttct tcaatctgtg tctgagcgcg gttatacagc gcctgcccct
     2881 ctttggttag cgagatatag agcttccgct gatcattgat cggctttaat cgcaacacta
     2941 aaccgtcgcg ttccatccgc gtgagaatcc cggtcaggct tgggcgcaaa atgcaggcgc
     3001 gatacgccag atcgtgaaaa tccattgatg ggctttccgc cagaatacgc acgatgcgcc
     3061 actgttgctc agtcaaatta tgccgtttaa cgattgggcg aaaataactc atcgccgctt
     3121 ctcgcgcctg gagcaacgca atggttagtg agtcgtgcat tatctttccc ctgaaaaatt
     3181 caaaatcatt aatatagaaa cagttaatcg tcacgttacc gggactgcgc tgcccctgca
     3241 attcctgatt ttatcaaaat tgatgatatt ttattaactt actgatattt aatattttat
     3301 tatctttaaa tgtaaatagt ttgttaatta gatcacattt acatcactta cttttgccaa
     3361 actacgcaat cgggaataaa agcaatcatt aacatattaa tgattaagat aatcgaatcc
     3421 gaggagtggt aatgaaaggc actatcttcg ccgtagcgtt gaaccatcgc agccaacttg
     3481 atgcatggca ggaagcgttc cagcaatccc cctacaaagc cccgcctaaa actgcggtct
     3541 ggtttattaa accgcgcaat acggtgattg gttgcggtga accgattccc tttccacagg
     3601 gtgaaaaggt actgagcggt gcgactgttg cgctgattgt gggaaaaacg gcgacgaaag
     3661 tacgtgaaga agatgcggca gagtacatcg ccggatatgc gctggctaac gacgtcagcc
     3721 tgccggaaga gagcttttac cgcccggcaa tcaaagcaaa atgtcgtgat ggattctgcc
     3781 ccattggcga aaccgtggct ctcagcaatg tcgataatct gaccatctat accgagatca
     3841 acgggcgtcc tgccgatcac tggaataccg ccgatttaca acgtaacgcc gcgcagttgc
     3901 tgagcgccct gagcgaattt gccacgctga atccaggcga cgccattctg ctcggcacgc
     3961 cacaggcgcg cgtggaaata cagccaggcg atcgcgttcg tgttctcgca gaaggtttcc
     4021 cgccgctgga aaatccggta gtggacgaac gtgaagtgac cacgcgcaag agcttcccaa
     4081 cgcagccaca cccgcacggc acgctgtttg ccctcggcct gaactacgcc gaccacgcca
     4141 gcgaactgga atttaagcca ccggaagaac cgctggtatt cctgaaagcg ccaaataccc
     4201 tcactggcga taaccagacc tccgtgcgtc caaacaatat tgaatacatg cactatgaag
     4261 cggagctggt ggtagttatt ggcaaacagg cgcgtaacgt cagcgaagcc gatgccatgg
     4321 attatgtcgc gggctacacc gtgtgtaacg actacgccat tcgtgactat ctggaaaact
     4381 gctaccgccc taacctgcgg gtaaaaagcc gcgacggact gacgccgatg ctttcaacca
     4441 tcgtgccgaa agaggcgatc ccggacccgc ataatctgac ccttcgcacc ttcgtcaacg
     4501 gcgagttacg ccagcaaggc accaccgccg atctgatctt cagcgtgccc ttcctgatcg
     4561 cctacttaag tgaatttatg accctgaatc cgggcgacat gatcgccacc ggcacaccca
     4621 aaggcttatc tgacgtggtg cctggcgatg aagtagtggt ggaagtagaa ggcgtgggcc
     4681 gcctggtgaa ccgaattgtg agtgaggata cagcgaaatg aaaaaagtaa atcattggat
     4741 caacggcaaa aatgttgcag gtaacgacta cttccagacc accaatccgg caacgggtga
     4801 agtgctggcg gatgtggcct ctggcggtga agcggagatc aatcaggcgg tagcggcagc
     4861 gaaagaggcg ttcccgaaat gggccaatct gccgatgaaa gagcgtgcgc gcctgatgcg
     4921 ccgtctgggc gatctgatcg accagaacgt gccagagatc gccgcgatgg aaaccgcgga
     4981 caccggcctg ccgatccatc agaccaaaaa tgtgttgatc ccacgcgctt cccacaactt
     5041 tgaatttttc gcggaagtct gccagcagat gaacggcaag acctatccgg ttgacgacaa
     5101 gatgctcaac tacacgctgg tgcagccggt gggcgtttgt gcgctggtat cgccgtggaa
     5161 cgtaccgttt atgaccgcca catggaaggt cgcgccgtgt ctggcgctgg gcaataccgc
     5221 ggtactgaaa atgtcggaac tctccccgct gaccgctgac cgcctgggtg agctggcgct
     5281 ggaagccggt attccggcag gcgtgctgaa cgtggtacag ggctacggcg caaccgcagg
     5341 ggatgcgctg gttcgtgatc atgacgtacg tgccgtgtcg ttcaccggcg gtacggccac
     5401 cgggcgcaac atcatgaaaa acgccgggct gaaaaaatac tccatggaac tgggcggtaa
     5461 atcgccggtg ctgatttttg aagatgccga tattgaacgc gcgctggacg ccgccctgtt
     5521 caccatcttc tcgatcaacg gcgaacgctg caccgccggt tcacgcatct ttattcagca
     5581 aagcatctac ccggaattcg ttaaacgctt tgccgaacgc gccaaccgtc tgcgcgtggg
     5641 cgatccgaac gatccgaata cccaggttgg cgcgcttatc agccagcagc actgggaaaa
     5701 agtctccggc tatatccgtc tcggcattga agaaggcgcc accctgctgg cgggcggccc
     5761 ggataaaccg tctgacctgc ctgcacacct gaaaggcggc aacttcctgc gcccaacggt
     5821 gctggcagac gttgataacc gtatgcgagt cgcccaagaa gagattttcg ggccggtcgc
     5881 ctgcctgctg ccgtttaaag acgaagctga aggcttacgc ctggcaaacg acgtggagta
     5941 cggcctcgcg tcgtacatct ggacacagga tgtcagcaaa gtgttacgcc tggcgcgtgg
     6001 cattgaagct ggcatggtgt tcgtcaacac ccagaacgtg cgtgacctgc gccagccatt
     6061 tggcggcgta aaagcctccg gcaccgggcg tgaaggcggt gagtacagct tcgaagtgtt
     6121 cgcggaaatg aagaacgtct gcatttccat gggcgaccat ccaattccga aatggggagt
     6181 ctgatatggg taagttagcg ttagccgcca agatcacgca cgtaccgtcg atgtatctct
     6241 ctgaactgcc agggaaaaac cacggttgcc gccagggcgc gatcgacggg cataaagaga
     6301 tcagcaagcg ttgccgggaa atgggcgtcg ataccattat cgttttcgat acccactggc
     6361 tggtcaacag tgcttatcac atcaactgtg cagaccattt tgaaggcgtc tacaccagca
     6421 acgagctgcc gcattttatc cgcgatatga cctacaacta cgagggcaac ccggagttgg
     6481 ggcagcttat tgccgatgaa gccttaaagc tcggcgtgcg ggcaaaagcg cacaacattc
     6541 ccagcctgaa actggaatac ggcacgctgg tgccgatgcg ctacatgaat gaagacaagc
     6601 acttcaaagt ggtctccatt tcggctttct gcacggttca cgattttgcc gacagccgca
     6661 agctgggcga agcgattctg aaagcgatcg aacagtacga cggcaccgtg gcggtccttg
     6721 ccagcggttc gttatcgcac cgctttattg acgatcagcg tgcagaagaa gggatgaaca
     6781 gctacacccg cgagttcgac cgccagatgg acgagcgcgt ggtgaagttg tggcgcgaag
     6841 gccagttcaa agagttctgc aatatgctgc cggagtacgc cgactactgc tacggcgaag
     6901 gcaatatgca cgacacggtg atgctgctgg ggatgctcgg ctgggataaa tacgacggca
     6961 aggtggagtt tatcaccgag ctattcccaa gctctggcac cggtcaggtt aacgctgttt
     7021 tcccgcttcc cgcgtaagga cgttttatgc cgcactttat cgttgaatgc agtgacaaca
     7081 tccgcgaaga agccgacctg ccggggttgt tcgccaaagt gaatccgacg ctggcagcca
     7141 cgggtatttt tccgctggcg ggtattcgca gccgcgtgca ttgggtcgat acctggcaga
     7201 tggccgacgg gcagcgtgat tatgccttcg tgcatatgac gttgaaaatc ggcgcaggtc
     7261 gcagcctgga aagccgtcag caggcgggtg aaatgctgtt tgaactgatt aaaacgcact
     7321 tcgccgccct gatggagagc cgcctgctgg cgttgtcgtt tgagattgaa gagctgcatc
     7381 cgacgctgaa ttttaaacaa aacaacgtgc acgcattgtt taagtagcgc gcagattgcc
     7441 cggtggcgct gcgcttaccg ggcctacaaa accccaaacc gtacaccgta ggccggataa
     7501 ggcgcagccg catccggcaa tgccacagga tatcgctatg ttcgataaac acacccacac
     7561 cctgatcgcc cagcgtctgg atcaggcaga aaaacagcgc gaacagatcc gcgcgatctc
     7621 gctggattac ccagagatca ccatcgaaga cgcttacgcg gtgcagcgcg aatgggttcg
     7681 cctgaaaatc gccgaaggcc gtacgctgaa aggccacaaa atcggtctga cctcaaaagc
     7741 aatgcaggcc agctcgcaga tcagcgaacc agattacggt gccctgctgg atgacatgtt
     7801 cttccacgat ggcagcgata tcccgaccga tcgctttatc gtgccgcgca ttgaagtgga
     7861 gctggctttc gtgctggcaa aaccgctgcg tgggccaaac tgcacgctgt tcgacgtcta
     7921 caacgccacg gactacgtga tcccggcgct ggagctgatc gacgctcgct gccacaacat
     7981 cgatccggaa acccagcgcc cgcgcaaagt gttcgacacc atttctgata acgccgccaa
     8041 cgccggggtg atcctcggtg gtcgtccgat caaaccagac gaactggatc tgcgttggat
     8101 ctccgccctg atgtatcgca atggcgtgat tgaagaaacc ggcgtcgccg ctggcgtgct
     8161 gaatcatccg gcaaacggcg tggcctggct ggcgaacaaa ctcgcaccgt atgacgtaca
     8221 actggaagcc gggcaaatca ttctcggtgg ttcgttcacc cgcccggttc cggcgcgtaa
     8281 gggcgacacc ttccacgtcg attacggcaa catgggttcc attagctgcc gctttgttta
     8341 aggagagaac gatggaaaac agctttaaag cggcgctgaa agcaggccgt ccgcagatcg
     8401 gattatggct ggggctgagt agcagctaca gcgcagagtt actggccgga gcaggattcg
     8461 actggttgtt gagcgacggt gagcacgcgc cgaataacgt gcaaaccgtg ctcacccagc
     8521 tacaggcgat tgcgccctac cccagccagc cggtagtacg tccgtcgtgg aacgatccgg
     8581 tgcaaatcaa acaactgctg gacgtcggca cacaaacctt gctggtgccg atggtacaaa
     8641 acgctgacga agcccgtgaa gcggtacgcg ccacccgtta tccccccgcc ggtattcgcg
     8701 gtgtgggcag tgcgctggcc cgcgcctcgc gctggaatcg tattcctgat tacctgcaaa
     8761 aagccaacga tcaaatgtgc gtgctggtgc agatcgaaac gcgtgaggca atgaagaact
     8821 taccgcagat tctggacgtg gaaggcgtcg acggcgtgtt tatcggcccg gcggatctga
     8881 gcgccgatat gggttatgcc ggtaatccgc agcacccgga agtacaggcc gccattgagc
     8941 aggcgatcgt gcagatccgt gaatcgggca aagcgccggg gatcctgatc gccaatgagc
     9001 aactggcaaa acgctatctg gaactgggcg cgctgtttgt cgccgtcggc gttgacacca
     9061 ccctgctcgc ccgcgccgct gaagcgctgg cagcacggtt tggtgcgcag gccaccgccg
     9121 tgaagcccgg cgtgtattaa tgccggatgc gctgcactta tccggcctac actcgcacca
     9181 aaccgtaggc cggataaggc gtttacgccg catccggcaa aaagccgtac caaatcgcgg
     9241 accggataag gcgttacgcc gcatccgcca taaaccttgt cgtaccctac aaaaatccca
     9301 ttagaggaag aaaaatgagc gacacctcac ctgccatacc ggagagtatc gatccggcga
     9361 atcagcataa agcgctgact gccggacaac aggcggttat taagaagcta tttcgccgcc
     9421 tgatcgtctt tctgttcgtg ctgtttatct tctcgttcct tgatcgcatc aacatcggct
     9481 ttgccggact cacgatggga cgcgacctcg gtctgagcgc caccatgttt ggcctcgcta
     9541 ccaccctgtt ctatgccgct tatgtcatct tcggcattcc cagcaacatt atgctgagta
     9601 ttgtcggtgc gcggcgctgg atcgccacca tcatggtgct ctggggcatc gcctctactg
     9661 ccaccatgtt tgccactggc cccaccagct tgtacgtact gcgtatactg gttggcatta
     9721 ccgaagccgg ctttctgcct ggtattctgc tgtatttaac cttctggttt ccggcctatt
     9781 tccgcgcccg tgccaacgcc ttgtttatgg tagcaatgcc ggtaacgaca gcgttgggct
     9841 cgatcgtttc cggctacatt ttgtcgctgg atggcgtcat ggcattaaaa ggctggcagt
     9901 ggctgttttt gctggaaggc ttcccgtcgg tattactcgg cgtcatggtg tggttctggc
     9961 ttgatgactc accggacaaa gctaagtggc tgacgaaaga agacaaaaaa tgcctgcaag
    10021 agatgatgga taacgatcgt ctgacgctgg ttcagccaga gggagccatc agccaccacg
    10081 ccatgcaaca acgcagtatg tggcgggaga tcttcactcc ggtggtgatg atgtataccc
    10141 tggcgtattt ctgcctgacc aacacactta gtgcgatcag catctggaca ccgcagatcc
    10201 tgcaaagttt taatcagggc agcagtaata tcaccatcgg cctgctggcc gccgtaccgc
    10261 agatttgtac cattctcggg atggtctact ggagccgtca ctcagatcgc cgccaggaac
    10321 gaaggcatca caccgccctt ccttatttgt tcgctgccgc aggttggtta ctggcttcgg
    10381 caactgatca caacatgatc cagatgctgg ggatcattat ggcttcgacc ggatcattca
    10441 gcgcaatggc gattttctgg acaacaccgg atcagtccat cagcctgcgg gcacgagcga
    10501 tcggtattgc ggtgatcaac gccactggca acattggttc agcgttaagt ccgtttatga
    10561 tcggctggtt gaaagatttg accggcagct ttaacagtgg attgtggttt gttgccgcgc
    10621 tgctggtgat tggtgcgggg attatctggg cgattccaat gcagtcctcc cgtccgcgag
    10681 cgaccccgta aggaacgacg atgtgtgacc gtcagattgc caatattgat atcagcaaag
    10741 agtacgatga aagcctgggc acggacgatg tgcattatca gtcgttcgcc cgcatggcgg
    10801 cattttttgg ccgccatatg ctgccacatc gccacgaaca gtactttcag atgcatttcc
    10861 tcaatagcgg acagattgag ctacagcttg acgatcatcg ctactcggtg gaagcgcccc
    10921 tgtttgtcct gacgccgccg tcagtacctc atgcgtttat tacggagtct gacgccgacg
    10981 gtcatgtgtt gacggtacgg gaagatctga tctggcccct gctggaagtt ctttatccgg
    11041 gcactcggga aaccttcggc ctgccggggg cctgtcactg gcagataaac ccgacgaact
    11101 ggcggcgctg gaacactatt ggcaactgat agagcgggaa tcggtggaac aactgcctgg
    11161 acgggaacac accctgacgt tactggcaca ggcagtgttc accctactgc tgcgtaacgc
    11221 aaaactcgac gaccatgccg ccagcgggat gcgcggagaa ttaaaactgt tccagcgttt
    11281 taatatgctg attgaaagcc attttcatca gcactggaca gtaccggatt acgctaacga
    11341 actgcatatc accgaatcac gactcacgga catctgccgt cgctttgcca accgtccgcc
    11401 aaaacggttg attttcgaca ggcagctgcg agaagccaag cggctgctgc tgttttctga
    11461 taacgccgtg aacaatattg cctggcaact cggttttaag gatccggctt attttgcgcg
    11521 cttttttaat cgcttagtcg gttgctcgcc cagtgcttat cgcgccaaaa aagtacctgt
    11581 gacgtgaaaa tcccttagcc ttaacgggaa accaggcacc acctgctatt cccctttctc
    11641 cgcctagagc aaggggattt agtaacgtca aaaatcgcta aaagcgacct cgatcacaaa
    11701 accgtacccg acctgaaaag taccagccat tgtcccaaaa gtctcttccc gtaatcgccc
    11761 ctgcaagctt taattgaata acaaaaacaa cacacaaaat taacaatcgt attccgatta
    11821 atactgtaga ggtcgacatg aaaccagaag atttccgcgc cagtacccaa cgtccgttca
    11881 ccggggaaga gtatctgaaa agcctgcagg atggtcgcga gatctatatc tatggcgagc
    11941 gagtgaaaga cgtcactact catccggcat ttcgtaatgc ggcagcgtct gttgcccaac
    12001 tgtacgacgc gctacacaaa ccggagatgc aggactctct gtgctggaac accgacaccg
    12061 gcagcggcgg ctatacccat aaattcttcc gcgtggcgaa aagtgccaac gacctgcgcc
    12121 agcaacgcga tgccatcgct gagtggtcac gcctgagcta tggctggatg ggccgtaccc
    12181 cagactacaa agctgctttc ggttgcgcac tgggcgcgaa tccgggcttt tacggtcagt
    12241 tcgagcagaa cgcccgtaac tggtacaccc gtattcagga aactggcctc tactttaacc
    12301 acgcgattgt taacccaccg atcgatcgtc atttgccgac cgataaagta aaagacgttt
    12361 acatcaagct ggaaaaagag actgacgccg ggattatcgt cagcggtgcg aaagtggttg
    12421 ccaccaactc ggcgctgact cactacaaca tgattggctt cggctcggca caagtgatgg
    12481 gcgaaaaccc ggacttcgca ctgatgttcg ttgcgccaat ggatgccgat ggcgtaaaat
    12541 taatctctcg cgcctcttat gagatggtcg cgggtgctac cggctcgcca tacgactacc
    12601 cgctctccag ccgcttcgat gagaacgatg cgattctggt gatggataac gtgctgatcc
    12661 catgggaaaa cgtactgatc taccgcgatt tcgatcgctg ccgtcgctgg acaatggaag
    12721 gcggttttgc ccgtatgtat ccgctgcaag cctgtgtgcg cctggcagtg aaattagact
    12781 tcattacagc actgctgaaa aaatcactcg aatgtaccgg caccctggag ttccgtggtg
    12841 tacaggccga tctcggtgaa gtggtggcgt ggcgcaacac cttctgggca ttgagtgact
    12901 cgatgtgttc tgaagcgacg ccgtgggtca acggggctta tttaccggat catgccgcac
    12961 tgcaaaccta tcgcgtactg gcaccaatgg cctacgcgaa gatcaaaaac attatcgaac
    13021 gcaacgttac cagtggcctg atctatctcc cttccagtgc ccgtgacctg aacaatccgc
    13081 agatcgacca gtatctggcg aagtatgtgc gcggttcgaa tggtatggat cacgtccagc
    13141 acatcaagat cctcaaactg atgtgggacg ccattggcag cgagtttggt ggtcgccacg
    13201 aactgtatga aatcaactac tccggtagcc aggatgagat tcgcctgcag tgtctgcgcc
    13261 aggcacaaag ctccggcaat atggacaaga tgatggcgat ggttgatcgc tgcctgtcgg
    13321 aatacgacca gaacggctgg actgtgccgc acttgcacaa caacgacgat atcaacatgc
    13381 tggataagct gctgaaataa cgcagcagga ggttaagatg caattagatg aacagcgcct
    13441 gcgctttcgt gacgcgatgg ccagcctgtc ggcagcggta aatattatca ccaccgaggg
    13501 cgacgccgga caatgcggga ttacggcaac ggccgtctgc tcggtcacgg atacaccacc
    13561 atcgctgatg gtgtgcatta acgccaacag tgcgatgaac ccggtttttc agggcaacgg
    13621 taagttgtgc gtcaacgtcc tcaaccatga gcaggaactg atggcacgcc acttcgcggg
    13681 catgacaggc atggcgatgg aagagcgttt tagcctctca tgcaggcaaa aaggtccgct
    13741 ggcgcagccg gtgctgaaag gttcgctggc cagtcttgaa ggtgagatcc gcgatgtgca
    13801 ggcaattggc acacatctgg tgtatctggt ggagattaaa aacatcatcc tcagtgcaga
    13861 aggtcacgga cttatctact ttaaacgccg tttccatcca gtgatgctgg aaatggaagc
    13921 tgcgatttaa gctccagccc cttcacgtat tcgtcgaagg ggcattttta ttgtgatctc
    13981 aatcacatat ccacccgatg aataattctt gcccaaccgc tcaccgccat tcctgaccgc
    14041 ttacgtccct aaaataacca ctcagttatt taccttactt tacgcgcgcg taactctggc
    14101 aacatcactg caggatagcg gtcaatttac ctcctcaaac gcaacgcaaa cctagaacgg
    14161 cttcggccta tgattaacaa attactctat gaattttggt ttgcaggaag gcagcaagtg
    14221 agtgaatccc cgggagctta caacagtaag tgacagaggt gaacgaacgc agctgccgca
    14281 cctgtaagcc aaaagacgac gagtaaaatg ccaggtttta ctatggatac gaaaaaacta
    14341 ttcaagcaca taccctgggt gattctcgga atcatcggtg cattctgcct cgcggtagtt
    14401 gcattacgtc ggggggagca cgtcagcgcc ctgtggatcg tggtcgcctc tgtgtcggtg
    14461 tatctggtgg cgtatcgcta ctacagtctg tacatcgccc agaaggtgat gaaactcgac
    14521 cccacgcgcg cgacgcctgc ggttattaac aacgacggtc tgaactacgt tccgaccaac
    14581 cgttacgtgt tgtttggtca ccacttcgcc gctatcgccg gtgccggtcc gctggttggt
    14641 ccggtgctcg ccgcgcagat gggctacctg cctggcacgc tgtggctgct ggcgggggta
    14701 gtactggccg gtgcggttca ggactttatg gtgctgttta tctcctctcg ccgtaacggc
    14761 gcatctctcg gtgagatgat caaagaagag atgggaccag taccggggac tatcgcgctg
    14821 tttggctgtt tcttaatcat gatcatcatc ctcgccgttc tggcgctgat tgtggttaaa
    14881 gccctggccg aaagtccgtg gggtgtcttc accgtttgct caaccgtacc gattgcgctg
    14941 tttatgggta tctacatgcg ctttatccgt ccggggcgtg taggtgaagt ttctgttatt
    15001 ggtatcgtgc tgctggttgc ctctatctat ttcggtggcg tgattgctca cgatccgtac
    15061 tggggtccgg cactgacctt taaagacacc accattacct tcgcgctgat tggctatgcg
    15121 tttgtttccg cactgctgcc ggtgtggctg atcctcgcac cgcgcgacta tctggcaacc
    15181 ttcctgaaaa tcggcgttat cgtcggcctg gcgctgggta tcgtggtact gaacccggaa
    15241 ctgaaaatgc ctgcaatgac ccagtacatt gacggtactg gcccgctgtg gaaaggcgct
    15301 ctgttcccgt tcctgttcat caccatcgcc tgtggtgcgg tatctggctt ccacgcgctg
    15361 atctcttccg gtacgacgcc gaaattgctg gctaacgaaa ccgacgcgcg tttcattggc
    15421 tacggcgcaa tgctgatgga atccttcgtg gcgattatgg cgctggttgc tgcgtccatc
    15481 atcgaaccgg gtctttactt cgcgatgaat accccgcctg ctggccttgg catcaccatg
    15541 cctaacctgc atgaaatggg tggcgagaac gcgccgatca tcatggcgca gctgaaagac
    15601 gttaccgcac acgcggcggc gaccgtcagc tcctggggct tcgtgatttc gccagagcag
    15661 atcctgcaaa ccgcgaaaga cattggtgag ccttctgtcc tgaaccgtgc aggtggcgcg
    15721 ccgacgctgg cggtaggtat cgctcacgtg ttccacaaag tgctgccgat ggctgacatg
    15781 ggcttctggt atcacttcgg tattctgttc gaagccctgt tcatcctgac cgcgctggat
    15841 gcgggtactc gttctggccg ctttatgctg caagacctgc tgggtaactt catcccgttc
    15901 ctgaaaaaaa ccgactctct ggttgccggt atcatcggta ctgcgggctg tgtgggtctg
    15961 tggggctacc tgctgtatca gggcgtggtc gatccgctgg gcggcgttaa gagcctgtgg
    16021 ccgctgttcg gtatttccaa ccagatgctg gcagccgtag cgctggtact gggcaccgtt
    16081 gtgctgatta agatgaagcg cacccaatac atctgggtaa ctgttgttcc ggctgtatgg
    16141 ctgcttatct gcaccacctg ggcgctgggt ctgaaactgt tcagcaccaa cccgcagatg
    16201 gaaggcttct tctacatggc aagccagtac aaagagaaga ttgctaacgg tactgacctg
    16261 acggcgcagc agattgccaa catgaaccac atcgttgtga acaactacac caacgcaggc
    16321 ctgagtattc tgttcctgat tgtggtgtac agcatcatct tctacggttt caaaacctgg
    16381 cttgcggtgc gtaacagcga caaacgtact gacaaagaaa ctccgtacgt tccaatcccg
    16441 gaaggcggcg tgaagatctc ttcgcaccac taaccggttg ccggatgcgc tgcgcgtatc
    16501 cggcctacaa agtgtctatc gtaggccgga taaggcgttt acgccgcatc cggcaaatcc
    16561 ctagcccgga ccttccgggc tttacgcata tctggaaggc aaaatgtttg gtaacttagg
    16621 acaggcaaaa aaatatctcg gccaggcggc gaagatgttg attggcattc cagactacga
    16681 caactacgtc gagcatatga agaccaacca tcccgacaag ccgtacatga gctatgaaga
    16741 attcttccgc gaacgccaga acgcgcgcta cggcggcgat ggtaaaggcg gtatgcgctg
    16801 ttgttaatgg agagagcatg aacccgattg cagttaccct actcaccggt tttttaggcg
    16861 cgggcaaaac caccctgctg cgccatattc ttaacgaaca acacggctac aagattgccg
    16921 tgattgaaaa cgaattcggc gaagtctccg ttgatgatca actgattggc gaccgcgcca
    16981 cgcagatcaa aacgctgacc aacggctgca tctgctgttc gcgctccaac gagctggaag
    17041 acgcactact cgacctgctg gataatctcg acaagggcaa tattcagttc gaccgtctgg
    17101 tcattgaatg caccggcatg gccgatcccg gcccgattat tcagaccttc ttctcccatg
    17161 agattttatg ccagcgctac ctgctggacg gggtgattgc gctggtggat gcggtacatg
    17221 ccgatgagca gatgaaccag ttcaccatcg cccagtccca ggttggctac gccgaccgta
    17281 ttctgctgac gaaaaccgac gtcgcaggcg aagcagagaa actgcgtgaa cgcctggcgc
    17341 gcatcaacgc ccgcgcaccg gtctacaccg ttacccacgg cgatatcgac ctgggccttc
    17401 tgttcaacac caacggtttt atgctggaag aaaacgtcgt cagcaccaaa ccgcgtttcc
    17461 actttatcgc ggacaaacaa aacgatattt cgtcgattgt ggtggaactg gattacccgg
    17521 tagatatcag cgaagtttcc cgggtgatgg aaaacctgct gctggaatcg gcggataaac
    17581 tgctgcgtta caaagggatg ctgtggattg acggcgaacc taaccgcctg ctgttccagg
    17641 gcgtccagcg cctctacagc gccgactggg accgcccgtg gggcgatgaa aaaccgcata
    17701 gcacgatggt gtttatcggg attcagttgc cggaggatga gattcgggcg gcgtttgcgg
    17761 gactcaaaaa gtaaccagcc ctccaacatc acaatacctg agactttatc accctcatat
    17821 tcctccagaa tatgagggca ttcgggctta attatctctg aacgtgcaac acttcctacg
    17881 actccttatg cgcctccaca tcctgcttcg ttaaccagag cgacttacga ccaaaatttt
    17941 cgtacatttt cagctgatct tcatagtgct gatcaactgt tccatcggga gcaataaacc
    18001 cactctgacc gggtgcgacc acatcccagg caagcaccgg acgatcgctt gtcgttggtg
    18061 agaaaacaat catatcgttt tctgttccac ggttttgata ctccgcctga tgacgcgttt
    18121 cttccgctgc ggcctgcggt acatcaaaga aattatttgc ccggaacgtt aaggccattg
    18181 caggtgtttt ccagttactc acattattgc catagcgttt ggaaagagtc tcccaggtat
    18241 cttccagcgc agccaacaca acctcctgct gtggtttccc agcaaacaga tcaaccgcct
    18301 gtgggattgg tgatttgtct ccctgcaccg cctcatacaa aatttttgct ccaacactta
    18361 tattcagcga accagttggg ccgtcctggg ttgtttcgta gccactggcg ctgtaccact
    18421 tatcaaatgg cataggtacg gcagccacta cggtacgctt caacatactg gtcagccaaa
    18481 cgttcaggat ggcagagcct ggc
//
LOCUS       DAJVSY010000079        17927 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.079, whole genome shotgun sequence.
ACCESSION   DAJVSY010000079 DAJVSY010000000
VERSION     DAJVSY010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17927
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.079"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            679..1044
                     /locus_tag="OQQ19_002396"
     CDS             679..1044
                     /locus_tag="OQQ19_002396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416472.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCS1803989.1"
                     /translation="MEKCDFYHIIVLSLNFPGYLKMEYGSTKMEERLSRSPGGKLALW
                     AFYTWCGYFVWAMARYIWVMSRIPDAPVSGFESDLGSTAGKWLGALVGFLFMALVGAL
                     LGSIAWYTRPRPARSRRYE"
     gene            1084..1779
                     /locus_tag="OQQ19_002397"
     CDS             1084..1779
                     /locus_tag="OQQ19_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohydrolase"
                     /protein_id="HCS1803990.1"
                     /translation="MDLQHWQAQFENWLKNHHQHQDAAHDVCHFRRVWATAQKLAADD
                     DVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAEETRRLLREEFEQFPAEKIEAVCH
                     VIAAHSFSAQIAPLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQ
                     HRPLDDKRYALDHFQTKLLKLPQTMQTARGKQLAQHNAHFLVEFMAKLSAELAGENEG
                     VDHKVIDAFSPAG"
     gene            1846..3264
                     /gene="dcm"
                     /locus_tag="OQQ19_002398"
     CDS             1846..3264
                     /gene="dcm"
                     /locus_tag="OQQ19_002398"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-cytosine methyltransferase"
                     /protein_id="HCS1803991.1"
                     /translation="MQENISVTDSYSTGNAAQAMLEKLLQIYDVKTLVAQLNGVGENH
                     WSAAILKRALANDSAWHRLSEKEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRG
                     FESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHKEGVSDEAAAEH
                     IRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRP
                     AMFVLENVKNLKSHDQGKTFRIIMQMLDELGYDVADAEDNGPDDPKIIDGKHFLPQHR
                     ERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPVLWKYLYR
                     YAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMAKGEKDFDDP
                     LNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLL
                     EPKIKQAVALRQQEAQHGRRSR"
     gene            3245..3715
                     /gene="vsr"
                     /locus_tag="OQQ19_002399"
     CDS             3245..3715
                     /gene="vsr"
                     /locus_tag="OQQ19_002399"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VSPR family DNA mismatch endonuclease"
                     /protein_id="HCS1803992.1"
                     /translation="MADVHDKATRSKNMRAIATRDTAIEKRLASLLTGQGLAFRVQDA
                     SLPGSPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDIS
                     RLQELGWRVLIVWECALRGREKLTDEALTERLEEWICGEGASAQIDTQGIHLLA"
     gene            complement(3704..4624)
                     /gene="yedA"
                     /locus_tag="OQQ19_002400"
     CDS             complement(3704..4624)
                     /gene="yedA"
                     /locus_tag="OQQ19_002400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="drug/metabolite exporter YedA"
                     /protein_id="HCS1803993.1"
                     /translation="MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRF
                     LAAGILLMAFLLLRGHKLPPLRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVV
                     VATVPLFTLCFSRLFGIKTRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSI
                     SWAFGSVYGSRITLPVGMMAGAIEMLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYL
                     ALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVI
                     VFAVVLVTLGKYLFPAKPVVAPVIQDASSE"
     gene            4797..5714
                     /locus_tag="OQQ19_002401"
     CDS             4797..5714
                     /locus_tag="OQQ19_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 domain-containing protein"
                     /protein_id="HCS1803994.1"
                     /translation="MLLAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLN
                     AQQVSGVRANRELPVVWGVAKGSLINKVILVPLALIISAFIPWAITPLLMIGGAFLCF
                     EGVEKVLHMLEARKHKEDPAQSQQRLEKLAAQDSLKFEKDKIKGAIRTDFILSAEIVA
                     ITLGIVAEAPLLNQVLVLSGIALVVTVGVYGLVGVIVKIDDLGYWLAEKSSALMQALG
                     KGLLIIAPWLMKALSIVGTLAMFLVGGGIVVHGIAPLHHAIEHFAGQQSAVVAMILPT
                     VLNLILGFIIGGIVVLGVKAVAKIRGQAH"
     gene            5793..5975
                     /locus_tag="OQQ19_002402"
     CDS             5793..5975
                     /locus_tag="OQQ19_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2158 domain-containing protein"
                     /protein_id="HCS1803995.1"
                     /translation="MSFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFH
                     ETELVPGEGSRSAEEV"
     gene            6146..7840
                     /gene="yedQ"
                     /locus_tag="OQQ19_002403"
                     /pseudo
     CDS             6146..7840
                     /gene="yedQ"
                     /locus_tag="OQQ19_002403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310721.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis regulator YedQ"
     gene            complement(7837..8652)
                     /locus_tag="OQQ19_002404"
     CDS             complement(7837..8652)
                     /locus_tag="OQQ19_002404"
                     /EC_number="3.1.3.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-3-phosphoglycerate phosphatase-related
                     protein"
                     /protein_id="HCS1803996.1"
                     /translation="MFSIQQPLLVFSDLDGTLLDSHSYDWQPAAPWLSRLREANVPVI
                     LCSSKTSAEMLYLQKTLGLQGVPLIAENGAVIQLAEQWQDIDGFPRIISGISHGEISQ
                     VLNTLREKEHFKFTTFDDVDDATIAEWTGLSRSQAALTQLHEASVTLIWRDSDERMAQ
                     FTARLNELGLQFMQGARFWHVLDASAGKDQAANWIIATYQQLSGKRPTTLGLGDGPND
                     APLLEVMDYAVIVKGLNREGVHLHDEDPARVWRTQREGPEGWREGLDHFFSAR"
     gene            complement(8950..9166)
                     /gene="yodD"
                     /locus_tag="OQQ19_002405"
                     /pseudo
     CDS             complement(8950..9166)
                     /gene="yodD"
                     /locus_tag="OQQ19_002405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416463.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide/acid resistance protein YodD"
     gene            9329..9517
                     /gene="dsrB"
                     /locus_tag="OQQ19_002406"
     CDS             9329..9517
                     /gene="dsrB"
                     /locus_tag="OQQ19_002406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein DsrB"
                     /protein_id="HCS1803997.1"
                     /translation="MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGI
                     WFFNEAGHQDGIFVEKAE"
     gene            complement(9561..10184)
                     /gene="rcsA"
                     /locus_tag="OQQ19_002407"
     CDS             complement(9561..10184)
                     /gene="rcsA"
                     /locus_tag="OQQ19_002407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator RcsA"
                     /protein_id="HCS1803998.1"
                     /translation="MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD
                     SQRPSVVFINEDCFIHDASNSQHIKHIINQHPNTLFIVFMAIANVHFDEYLLVRKNLL
                     ISSKSIKPESLDDILGDILKKETTITSFLNMPTLSLSRTESSMLRMWMAGQGTIQISD
                     QMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNVTNGIFVNMR"
     gene            complement(10469..11254)
                     /gene="fliR"
                     /locus_tag="OQQ19_002408"
     CDS             complement(10469..11254)
                     /gene="fliR"
                     /locus_tag="OQQ19_002408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HCS1803999.1"
                     /translation="MMQVTSDQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKL
                     GLAMMITFVIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEII
                     GLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG
                     GEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGF
                     PLTLTVGISLMAALMPLIAPFCEHLFSEMFNLLADIISELPLI"
     gene            complement(11263..11532)
                     /gene="fliQ"
                     /locus_tag="OQQ19_002409"
     CDS             complement(11263..11532)
                     /gene="fliQ"
                     /locus_tag="OQQ19_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013365797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HCS1804000.1"
                     /translation="MTPESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQI
                     NEMTLSFIPKIIAVFIAIIIAGPWMLNLLLDYVRTLFTNLPYIIG"
     gene            complement(11542..12278)
                     /gene="fliP"
                     /locus_tag="OQQ19_002410"
                     /pseudo
     CDS             complement(11542..12278)
                     /gene="fliP"
                     /locus_tag="OQQ19_002410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310714.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly.; frameshifted; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
     gene            complement(12278..12643)
                     /gene="fliO"
                     /locus_tag="OQQ19_002411"
     CDS             complement(12278..12643)
                     /gene="fliO"
                     /locus_tag="OQQ19_002411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310713.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliO"
                     /protein_id="HCS1804001.1"
                     /translation="MNNHATVQSSTPVSAAPLLQVSGALIAIIALILAAAWQVKRLGF
                     APKRTGVNGLKISASASLGARERVVVVDVEDARLVLGVTAGQINLLHKLPPSAPTEEI
                     PQTDFQSVMKNLLKRSGRS"
     gene            complement(12646..13059)
                     /gene="fliN"
                     /locus_tag="OQQ19_002412"
     CDS             complement(12646..13059)
                     /gene="fliN"
                     /locus_tag="OQQ19_002412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HCS1804002.1"
                     /translation="MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGG
                     GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN
                     GYLIAQGEVVVVADKYGVRITDIITPSERMHRLSR"
     gene            complement(13056..14060)
                     /gene="fliM"
                     /locus_tag="OQQ19_002413"
     CDS             complement(13056..14060)
                     /gene="fliM"
                     /locus_tag="OQQ19_002413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HCS1804003.1"
                     /translation="MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQR
                     RVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL
                     NLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKL
                     ALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNIC
                     LPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQIL
                     KLKPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK
                     "
     gene            complement(14065..14529)
                     /gene="fliL"
                     /locus_tag="OQQ19_002414"
     CDS             complement(14065..14529)
                     /gene="fliL"
                     /locus_tag="OQQ19_002414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HCS1804004.1"
                     /translation="MTDYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADD
                     KAQQRVVPSPVFYALNTFTVNLGDADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLL
                     LLFSRQDAAVLATEEGKKNLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR"
     gene            complement(14634..15761)
                     /gene="fliK"
                     /locus_tag="OQQ19_002415"
     CDS             complement(14634..15761)
                     /gene="fliK"
                     /locus_tag="OQQ19_002415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook length control protein FliK"
                     /protein_id="HCS1804005.1"
                     /translation="MIRLAPLITADVDTTTLPGGKASDAAQDFLALLSEALAGETTTD
                     KAAPQLLVATDKPTTKGEPLISDILADAQQADLLIPVDETLPVINDEQSTSTPLTTAQ
                     TMTLAAVADQNTTKDEKADDLNEDVTASLSALFAMLPGFDNTPKVTDVPSTVLPAEKP
                     TLFTKLTSAQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPH
                     QTQPLPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLK
                     VDDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQQAASQ
                     QQQSQRTVNHEPLAGEDDDTLPVPVSLQGRVTGNSGVDIFA"
     gene            complement(15758..16201)
                     /gene="fliJ"
                     /locus_tag="OQQ19_002416"
     CDS             complement(15758..16201)
                     /gene="fliJ"
                     /locus_tag="OQQ19_002416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis chaperone FliJ"
                     /protein_id="HCS1804006.1"
                     /translation="MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLID
                     YQNEYRNNLNSDMSAGMTSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWR
                     EKKQRLQAWQTLQERLSTAALLAENRLDQKKMDEFAQRAAMRKPE"
     gene            complement(16220..17588)
                     /gene="fliI"
                     /locus_tag="OQQ19_002417"
                     /pseudo
     CDS             complement(16220..17588)
                     /gene="fliI"
                     /locus_tag="OQQ19_002417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416451.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellum-specific ATP synthase FliI"
     gene            complement(17588..>17927)
                     /gene="fliH"
                     /locus_tag="OQQ19_002418"
     CDS             complement(17588..>17927)
                     /gene="fliH"
                     /locus_tag="OQQ19_002418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707825.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HCS1804007.1"
                     /translation="ASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGK
                     PQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQE
                     LCRLAAPGVV"
BASE COUNT         4399 a         4485 c         4716 g         4327 t
ORIGIN      
        1 caaccatctt gccgtagaaa tcaactttat tgccatcttt attgtaaatt tcagccgcat
       61 ttgctgcgcc agcaactaat aacgccggga ccagcattgc cagaactttt cttttcatta
      121 tgtattccct tgtgattata atcttcatga atatatcaat aagtgccgtt atccaaaaaa
      181 aagcacattt ggatactatt ctatgaagtt catttcattt taagtattac atgcaacaaa
      241 tgtatttaaa agatttcaaa atgtttctaa tctatttaat ataattcaga gatatgaatt
      301 ataaatattc atgaaaatta taaatgtata tcaatatgtt atgagttgag cggaaacata
      361 gggggtatca atgattgttg cgccaaacgg ctggtgtgat caggcgcaca ttaatgaagg
      421 cataaaaaaa agccggcatc atgccggccc aaaaaatata aacaagacga taaaaggcta
      481 ataacggaag catcatgaca cagaataata aaaaggtata attgtaatca gtgctaatat
      541 attgattaaa tgaattaata aagccgatat caaagataaa taaaatcgct caaaacgatt
      601 tttcctgtat tcactgccgt tgcgcaaaat ttatctattt gttcaaaaaa tgattgagtc
      661 ttgactggct catccaatgt ggaaaaatgt gacttttatc acataatagt actaagtctg
      721 aattttccgg gttatctcaa aatggaatac ggttcgacaa agatggaaga gagactctct
      781 cgcagccctg gcggcaaact ggctttgtgg gctttctata catggtgtgg ctatttcgtc
      841 tgggcaatgg cgcgttacat ctgggtgatg agccggatcc ccgatgcccc cgtgtcggga
      901 tttgaaagcg atttaggctc taccgcggga aagtggttag gggcactggt cggattttta
      961 tttatggctc tggtcggggc attgttaggc agcattgcct ggtacacccg acctcgtccc
     1021 gcacgtagca gacgctatga ataaaaactg ctaaggtggc gactctttgg caacggagcg
     1081 cgtatggact tacaacactg gcaggcacag ttcgaaaact ggttgaaaaa ccatcatcag
     1141 caccaggacg cggcccatga cgtgtgtcat tttcgccgcg tctgggctac ggcacagaag
     1201 ctggcggcag atgacgatgt cgatatgctg gtgattttaa ccgcctgtta ttttcacgat
     1261 attgtgagcc tggcgaaaaa tcatccgcaa aggcagcgtt cttcaatcct ggcggcagaa
     1321 gagacgcgtc gcctgctccg tgaagagttc gagcaatttc cggcggagaa aatcgaggcc
     1381 gtttgtcatg tcattgccgc tcacagtttc agcgcgcaaa tcgccccctt aacaacggaa
     1441 gctaaaatcg tccaggatgc ggatcggctg gaagccctgg gggcgattgg cctggcgcgc
     1501 gtgtttgccg tttcaggggc attgggcgtg gcgctgtttg atggtgaaga tccgttcgca
     1561 cagcatcgcc cgcttgatga taaacgctac gcgctggatc atttccagac taagttgctg
     1621 aagctaccgc aaaccatgca aaccgcaaga ggcaagcagc tggcgcagca caacgcgcat
     1681 tttttagtcg agtttatggc gaagctcagt gccgaactgg cgggggagaa tgaaggtgtc
     1741 gatcacaagg tgatagatgc gttttcaccc gcgggataag cgcgtggccc taaatggctg
     1801 taattatgtt aacctgtcgg ccatctcaga tggccggtta aatctatgca ggaaaatata
     1861 tcagtaaccg attcatacag caccgggaat gccgcacagg caatgctgga gaaactgctg
     1921 caaatttatg atgttaaaac gctggtggcg cagcttaatg gtgtgggtga gaatcactgg
     1981 agcgcggcaa ttttaaaacg tgcgctggcg aatgactcgg catggcaccg tttaagtgag
     2041 aaagagttcg cccatctgca aacgttgtta cccaaaccac cggcacatca tccgcattat
     2101 gcgtttcgct ttatcgatct atttgccgga attggcggca tccgtcgcgg ttttgaatcg
     2161 attggcggac aatgcgtgtt taccagcgaa tggaacaaac atgcggtacg cacttataaa
     2221 gccaaccatt attgcgatcc ggcgacgcat cattttaatg aagatatccg cgatatcacc
     2281 ctcagccata aagaaggcgt gagtgatgag gcggcggcgg aacatattcg tcaacacatt
     2341 cctgaacacg atgttttact ggccggtttc ccttgtcagc cattttcgct ggctggcgta
     2401 tcgaaaaaga actcgctcgg gcgggcgcac ggttttgcct gcgataccca gggcacgctg
     2461 ttttttgatg tggtacgcat tatcgacgcg cgtcgtccgg cgatgtttgt gctcgaaaac
     2521 gtcaaaaacc tgaaaagtca cgaccagggt aaaacgttcc gcatcatcat gcagatgctg
     2581 gacgaactgg gctatgacgt ggctgatgca gaagataacg ggccggacga tccgaaaatc
     2641 atcgatggta aacattttct gccgcagcac cgtgaacgca tcgtgctggt gggttttcgt
     2701 cgcgatctta atctgaaagc cgattttact ctgcgtgata tcagcgaatg tttccctgca
     2761 cagcgagtga cgctggcgca gctgttggac ccgatggtcg aggcgaaata tatcctgacg
     2821 ccggtgctgt ggaagtacct ctatcgatat gcgaaaaaac atcaggcgcg cggtaacggc
     2881 ttcggttatg gaatggttta tccgaacaat ccgcaaagcg tcacgcgtac gctgtctgcg
     2941 cgttattaca aagatggcgc ggaaatttta atcgatcgcg gctgggatat ggccaaaggt
     3001 gagaaagact ttgacgatcc gctgaatcag caacatcgtc cacgtcggtt aacgcctcgg
     3061 gaatgcgcgc gcttaatggg ttttgaagcg ccgggagaag cgaaattccg cattccggtt
     3121 tcggacactc aggcctatcg ccagttcggt aactcggtgg tcgtgccggt ctttgccgcg
     3181 gtggcaaaac tgcttgagcc aaaaatcaaa caggcggtgg cgttgcgtca gcaagaggca
     3241 caacatggcc gacgttcacg ataaggccac tcgcagcaaa aatatgcgcg cgattgccac
     3301 gcgtgatacg gcgattgaga agcgcctcgc cagtctgtta accgggcagg gcctggcgtt
     3361 tcgcgttcag gacgccagtc tgcccggaag cccggatttt gtcgttgatg aatatcgctg
     3421 cgtgatattt acccatggct gcttctggca tcatcatcac tgctatctgt ttaaagtgcc
     3481 tgcgactcga accgagttct ggctggagaa gataggtaaa aatgttgaac gcgatcgccg
     3541 cgatatcagt cgtttgcagg aactcggctg gcgcgtactg attgtctggg agtgtgcatt
     3601 acgtgggcgc gagaagctga cggatgaagc gcttaccgag cgtctggaag agtggatctg
     3661 cggcgaaggt gccagcgcgc agatcgacac gcaggggatt catttactcg cttgatgcgt
     3721 cctgaataac tggcgcaact acgggttttg ccgggaagag atattttccc aacgtgacca
     3781 gtaccaccgc gaagacaatt acgccgagcg ccagccattc aatcttcgac agcgtctctc
     3841 cgcccagtcc cgtacccagc aagaccgcga ccaccgggtt aacgtaggcg tagctggtgg
     3901 cgagagccgg actgacatta cggattaaat acatataagc gttgatggcg ataatcgaac
     3961 caaacagcgc cagatagccg accgcaagga agcctgaaag ggaagggagc gccgtcagtt
     4021 tttcacctgc aatcatcgac gcgatcatta acaccacgcc tgccgccagc atctcaatcg
     4081 cacccgccat catccctaca ggtaaggtaa tgcgcgagcc ataaaccgag ccaaacgccc
     4141 agctaatcga gccgattaaa atcagaatcg cgccccacgg attgccgctt aaatttccac
     4201 cgctattgag catgatgatt ccggcaagcc caatggcgat acccacccat tccaatttgc
     4261 gcgttttaat gccaaacagg cggctgaagc acagggtaaa gaggggcacg gttgcaacca
     4321 caacggcggc gatgccggaa ggaacatttt gatgctcggc aaccgtcacc atgccattac
     4381 cgacagccag caataacagg ccaatcagcg cggcattgag cagcggacgt agcgggggga
     4441 gcttgtgtcc gcgcagtagc aaaaatgcca tcaataaaat accggctgcc aggaatcgaa
     4501 cgcctgccat cattaacgga ggccagcttt ccacgccaat ccgaatgaca aaataggttg
     4561 agccccaaat gatatacaac gcaaacagcg cgccaaaaag cggtaacaac tggcggaaac
     4621 gcataatccc tcacggtgga aataaaaagg tggttcatag taaacgtgaa aatcattctg
     4681 ctggcgagag atataattgc acttgattgt taaaaaaatg ttgacctgtg aagcaagtat
     4741 cagagctgcc gtttttgctt catacttaca cccttcaaca ataaaaatga gagggaatgc
     4801 ttttggccgg gagtagttta ctgacgttgc tcgatgatat cgccacacta ctggacgata
     4861 tctccgtgat gggcaaactg gcggcgaaga aaaccgccgg tgtattaggg gatgacttat
     4921 cgctcaatgc gcaacaagtt tcaggcgtgc gggccaaccg ggaacttccc gtggtctggg
     4981 gcgtggcgaa aggatcgctg attaataaag tgattctggt gccgctggcg ctgatcatca
     5041 gtgcgtttat cccgtgggcg attacgcctc tgttgatgat tggtggcgcg tttctctgct
     5101 ttgaaggagt agagaaagtg ctgcatatgc tggaggcgcg taaacataaa gaagatccgg
     5161 cgcagagcca gcagcgtctg gagaagctgg cggcgcagga ttcgctgaag tttgaaaagg
     5221 acaaaataaa aggggcgatt cgtaccgatt ttatattgtc tgccgaaatc gtcgccatca
     5281 cgctggggat tgtggccgaa gcgccgttgc ttaatcaggt gctggtgctt tcaggcatcg
     5341 cgctggtagt gaccgtgggc gtctacggtc tggtaggggt tatcgttaag attgatgacc
     5401 tggggtattg gctggcggaa aaatccagcg cgctgatgca ggcattaggt aaagggttat
     5461 tgatcattgc gccctggctg atgaaagcgt tatcgattgt cggcacgctg gcgatgttcc
     5521 tcgtcggcgg cgggattgtg gtacatggta ttgcgccgct gcatcacgcc attgaacatt
     5581 tcgctgggca gcaaagtgca gtggtggcga tgatattacc gactgtttta aatctgattc
     5641 ttggatttat catcggcggc atcgtggtgc tgggagtgaa agccgtagcg aaaatacgcg
     5701 gtcaggcaca ttaatactcg cacaggctat tatgcaaaat tcgccatctt caactaaggt
     5761 gaacaagttt cactcgaaaa aaggaggcga gtatgagctt tatggttagt gaggaagtta
     5821 cggttaaaga gggcggcccg cggatgattg tcaccggata ctccagcggt atggttgagt
     5881 gtcgttggta tgacggttac ggggtcaagc gggaagcttt tcatgaaacc gagcttgttc
     5941 cgggggaggg gagtcgttct gcggaagaag tttgaaaggg tatcattaac accaggccgg
     6001 atcacttccg gcctggtgtg ccaatgcctg caatgaatga tagtcgcgtc ttatcatgcc
     6061 accattataa aattatcgct gttttgcggt acgctatcgc caggttatgc cagaatcata
     6121 aaaaagcagg ttgggagtcg tcagggtgca gcacgagaca aaaatggaaa accagagctg
     6181 gttgaaaaaa atcgcacgcc gcctggggcc tggtcatgtc gttaatctct gctttatcgt
     6241 ggtattgctt ttttccacct tgctgacctg gcgtgaagtg gtagtgctgg aagatgccta
     6301 tatctccagt cagcgtaatc atctggaaaa cgtagccaac gcgctcgata agcatttgca
     6361 gtataacgtc gacaaactga tctttttgcg taatggcatg cgcgaagctc tcgtagcgcc
     6421 actggatttc acttcactgc gtaatgctgt aaccgagttc gaacagcatc gcgacgagca
     6481 cgcctggcaa attgaactca accgacgacg caccctgtca gtcaatggcg tatcggatgc
     6541 attagtcagc gaggggaatc tcctgtctcg cgaaaatgaa agcctcgaca atgaaattac
     6601 cgctgcactg gaagttggtt acttgctgcg actggcgcac aacacctcgt cgatggttga
     6661 acaggcgatg tatgtctcgc gtgccggatt ttacgtttcg acgcagccga ccttgtttac
     6721 gcgcaatgta ccaacgcgtt attacggcta tgtcacccaa ccctggttta tcggccattc
     6781 gcaatgagaa aatcgtcacc gcgcggtacg ctggtttact tcgcaaccgg aacacgccag
     6841 caatactgaa ccgcaggtta ccgtcagtgt tccggtagac agtaataact actggtatgg
     6901 cgtgctgggg atgagtattc ccgtgcgtac catgcagcaa tttttaagaa acgccatcga
     6961 taaaaacctc gatggtgagt atcagctcta tgacagtaag ctgagatttt tgacctcttc
     7021 caatcctgac catccaacag ggaatatttt tgatcctcgt gaactggcct tgctggcgca
     7081 ggcgatggaa catgacacgc ggggcggcat tcgtatggac agtcgctatg ttagctggga
     7141 acgtctggac catttcgacg gtgtgctggt gcgcgtccat acgctaagcg aaggcgtgcg
     7201 cggcgatttc ggcagtatca gcattgcatt aaccctgctg tgggcgctct ttaccaccat
     7261 gttactcatc tcctggtatg tgattcgccg gatggttagc aacatgtatg ttctgcaaag
     7321 ctcgttgcag tggcaggcgt ggcacgacac cttaacccgt ttatataatc gtggcgcact
     7381 gtttgaaaaa gctcgtccgc tcgcgaaatt gtgtcagacg caccaacatc ctttttctgt
     7441 cattcaggtc gaccttgacc attttaaagc gattaatgac cgctttagtc atcaggcggg
     7501 cgaccgtgtt ctttctcatg ctgccggatt aattagcagt tccttgcgtg cgcaggacgt
     7561 tgccgggcgg gtcggtggtg aggagttttg tgtgattctg ccaggcgcga gtctgacgga
     7621 ggctgcggaa gtcgcagaac gtattcgcct gaagttaaat gaaaaagaga tgttgattgc
     7681 taagagtacg acgatacgca tcagtgcctc gttgggggta agtagcagcg aggaagccgg
     7741 tgattatgat tttgaacaac tccagtcact ggctgaccgt cggctttatc tcgctaaaca
     7801 ggccgggcgt aatcgggtat gcgcgagcga taacgcttaa cgagcggaga aaaaatggtc
     7861 cagcccttca cgccatcctt ccggtccttc acgctgcgtt cgccagacgc gggccggatc
     7921 ctcatcatgc agatgcaccc cttcacggtt tagccctttc acaatcaccg cgtaatccat
     7981 tacctccagt aagggcgcat cgtttggccc atcgcccagg ccaagtgtgg ttgggcgttt
     8041 gcctgataat tgttgatagg tcgcgataat ccagttggcg gcctgatctt ttccggcaga
     8101 ggcatccagg acgtgccaga agcgcgcacc ctgcataaac tgtaagccca gttcgttcag
     8161 acgagcggta aattgtgcca tacgctcgtc actgtcgcgc cagattagcg ttaccgacgc
     8221 ctcatgcagc tgcgtcagcg ccgcctggct acggcttaat cccgtccatt cggcgatggt
     8281 tgcatcgtcg acatcatcga aagtcgtgaa tttaaaatgt tctttctcgc gtagcgtatt
     8341 taaaacctgg ctgatttcgc catggctaat acctgagatg atgcgtggaa aaccgtctat
     8401 atcctgccat tgttcagcaa gctggatcac tgcgccattt tcggcaatca gtggtacccc
     8461 ttgtaacccc aacgtttttt gcaagtacag catttccgct gaagttttac tgctacagag
     8521 aatgacggga acattcgctt cgcgtaaacg gctgagccag ggggcagccg gttgccagtc
     8581 ataactatga ctgtccagca gggtgccatc aagatcgcta aaaaccagta gtggttgttg
     8641 aattgaaaac atggtcgcgc agttctcccc ttaccaggat gattctcaaa acagcacaaa
     8701 taatcaaaga tgattttttc gggagcgatc ccgttgacgc cagagccacc aaggggtgac
     8761 gcacgtcaca tttctattca taagtagcgt taatcattca tatcgcgaat attttcttgt
     8821 cagcgaaaaa aattgcggat aaggtgatga acacatcaga tttcctggtg taacgaattt
     8881 tttaagtgct tcttgcttaa gcaagtttca tcccgacccc ctcagggtcg ggattttttt
     8941 attgtgcatt caacgattca cttcagagac gctgaagtca tgaatatcca gttcgaaggc
     9001 atccgccaat tcacgccatg tatgatattc acgtccatcg acgctaacgt gttcagaatc
     9061 gttctggctg cgatgaactt atttcattga tcgccgccag cagggcatcg acatcgacgc
     9121 tgacctcacg ttttgcggta tcgctgtact cttttgcggt tttcatcatc tttcctcgca
     9181 accgttactc tgttgttgcc gccagtcgtt aagtccgcct ggcatctctt aagtatagac
     9241 cgtcgagaaa atcagcactc gcgcgcgcct ggcgctgcca gaaaaacgaa attgttctac
     9301 actggcacaa agccacagga ggaaaacgat gaaggtgaat gatcgggtaa cagtcaaaac
     9361 ggatggcggt ccgcgtcgtc ctggcgtggt actagcagtt gaggagttta gtgaaggcac
     9421 aatgtacctg gtttcgctgg aagactaccc gctcggcatc tggttcttta atgaagcagg
     9481 gcatcaggac ggtatctttg tggagaaagc agagtaatct tattcagcct gactggtggg
     9541 aaaccaccag tcagaatgtg ttagcgcatg ttgacaaaaa taccattagt cacattatcc
     9601 gtcagtcgga cgacatggta gataacctgt ttattatgcg ttttgatctt acgtttaata
     9661 ttacctttat gcgatgaaac ggtcttggct ttgatattca tttggtcaga gatttgaatg
     9721 gttccctgac ctgccatcca cattcgcaac atactcgatt cggttcggct caatgataac
     9781 gtcggcatat ttaaaaaaga ggttatcgtt gtctcttttt tcagaatatc gccaaggata
     9841 tcgtcgagag attccggttt aatcgattta gaacttatca ataaattttt tctgaccaat
     9901 agatattcat caaaatgaac attggcaatt gccataaaaa cgataaataa cgtattggga
     9961 tgttgattaa tgatgtgctt gatgtgctga ctgttagaag catcatggat gaaacagtcc
    10021 tcattaataa acaccactga agggcgctgt gaatcacaag ctatggcaag gtcatcaacg
    10081 gtttcaatgt cgttgatttc tcttttttta acccctctac tcaacagata cccggttaaa
    10141 cctagtcggg tgtaactaca taaatccata ataatcgttg acatggcata ccctcactca
    10201 atgcgtaacg ataattcccc ttacctgaat atttcatcat gactaaacgg aacaacatgg
    10261 gtcacctaat gcgccactct cgcgattttt caggcggact tactatcccg taaagtgttg
    10321 tataatttgc ctggaattgt cttaaagtaa atgttgcgat atgtgagtga gcttaaaaca
    10381 aatatttcgc cgcaggagta tcctggaaga tgttcgtagg tattattttt cggataatcc
    10441 ttaggataac atgataaacg ttacggaatt atattaatgg caattcacta ataatatcag
    10501 ccagcaaatt aaacatctca ctgaataaat gttcgcaaaa aggtgcaatt aacggcatta
    10561 atgccgccat taaagagata ccgacagtca gagttaatgg aaatccaata acaaaaatgg
    10621 ataattgcgg ggccatacga ttcagtaaac ctaatgccag attcagggtc agcagcagag
    10681 taatgagcgg taacgccagc atcagcccgt taaggaaaat caaactcccc gctttggtga
    10741 gtgccagaaa cgcattgctg ttcaacggtt cgccaccaat tggcagggtg tgaaaggtat
    10801 cgaccagcag tgaaatcaac cataaatgac cgttaaatgt caggaacagc agtaacgcca
    10861 gcatatccat gatacgcgct aaaacgggca tattgagatg gctggccgga tcgacaaacg
    10921 tcgcaaatga cagccccatt tgcagaccga taatttcgcc agcggttcgc acagcggcaa
    10981 aggcaaattg catggtaaaa ccaagcgcaa tgccgatcag gatctgctgc acggccagcc
    11041 acagagcaaa gaacgaaaaa acaggaacat cgttggcagg taatgatggg gcaatgacga
    11101 acgtgatcat cattgccagc cccagtttta cccgtttcgg cacgctgcgt tcgctcagaa
    11161 ttggtgcggt agaaatgagc gccagcacgc gcagtaacgg ccagaagtac aggcttaacc
    11221 aggaaagcca ttgatcgctt gtcacctgca tcattgtacg gcctacccga tgatatacgg
    11281 caggttagtg aacaaggtgc ggacgtaatc cagcaacaga ttgagcatcc acggtccggc
    11341 aataataatg gcaataaata cggcgatgat ttttggaata aacgacagcg tcatttcgtt
    11401 gatctgcgtg gcggcctgca aaatactgat gataaggccc gtgaccagcg ccaccagcaa
    11461 cagcggggca gccagtgcca gcgcgacttt catcgcttca gtccccatca tcatgaccga
    11521 ttcaggtgtc attttgcctc tctagctgta aaagctctgc gccagcgaac cgaccagcaa
    11581 ttgccagcca tccaccagta caaacagcat cagtttaaag ggcagagcaa tggtggcggg
    11641 gggaccatca tcatccccaa tgccatcaac acgctggcaa tcaccaggtc gataatcaaa
    11701 aaaggaatga aaatcgtgaa gcctatctga aatgcggttt tcaactcgct ggtcacgtag
    11761 gccgggcgca aaatgcgcat cggcacggct tcaggtccct gcaacgggcc ggtattcgct
    11821 agtctggcaa acaaccctaa atctgcctca cgggtctgac gcagcataaa ctcacgtagc
    11881 ggctgcgccc ctttttccag cgcctcctgc attgatattt tctcttcgct gaatggctgg
    11941 tacgcatcga cataaatttt gtcgatcacc ggtgacataa taaaaaaggt caaaaatagt
    12001 gccagcccca gcaatacctg gttaggtggc gcggagggcg ttcccagcgc gttacgcaat
    12061 aaaccaaaaa caatgatgat gcgggtgaaa ctggtcatca tcagtaaaat tgccggaata
    12121 aacgtcaacg aggtgatgaa caccagcgtc tgcaccggga gcgaccagct ttgtccaccg
    12181 ccaggcagcg gctggctggt gatacccggc agttgcgcga aggcgagggg cgtaaccagc
    12241 cagagaagga caggtgcgac agacaacaaa cgacgcatca ggatctccca ctacgcttaa
    12301 gcaaattttt catgaccgac tgaaaatcgg tctgcggtat ctcttctgtt ggtgctgaag
    12361 ggggaagttt atgcagcaga ttgatttgcc ctgcggtaac gccgagcacc agccgtgcat
    12421 cttccacatc gaccaccaca acccgttcac gcgcgcccag cgaagcactg gcgctaattt
    12481 tcagaccgtt aacgccagtg cgtttcgggg caaatcccaa ccgttttacc tgccaggcag
    12541 cagcgaggat cagggcaata atggcgatga gtgcgccgct gacctgcagc agtggcgcag
    12601 cagaaaccgg cgtggaagat tgcacagtag cgtggttatt catcactaac ggctcaggcg
    12661 atgcattcgc tcagacggag taatgatatc ggtgatccgc acgccatatt tatcggcaac
    12721 gaccaccact tcgccctggg cgattaaata accgttgatc agaatatcca gtggttcgcc
    12781 cgccagaccg tccagcgcca cgacggaccc ttgcgtcaga cgcaacagct ctttgatggt
    12841 catccgcgta cggcccagct cgacggtcag cttgaccgga atatccatta tcaggtcgat
    12901 atcctgcaac gttccgctga catcaccacc gccaaattgc tggaacaccg cgtcggcagc
    12961 gcttttgctg ctggttgatt tttgttcgct caacgcttca gcccacagat cgtccattgc
    13021 gccgttgttg tcatcggccg gattattcat gtcactcatt tgggctgttc ctcgttcaga
    13081 gaatttaaaa tcgggttaat caaatgttct atccgtaacg catactgacc gttgagagtg
    13141 ccgtactgac tggtcagcac cgggacgccg tcaacatggg cgatgatgcg atcaggtttt
    13201 tctatcggca ggacgtcgcc gggtttcagt tttaaaatct gcgacaggcg tagcgagata
    13261 tcggcaaagt tggcgaccag ctccagctgt gaatgctgca cctggcgcac caggttatcg
    13321 cgccagttct gatcttcatt acgcgagttt tccagcggcg ggttaaccaa caattcccgt
    13381 agcggctcga tcatgctgaa tggcagacag atattaaatt cgccggtcag gttgccaatc
    13441 tccacatgga acggcgtgtt aaccacaatg tcgttcggcg aggtggtgat attggtaaat
    13501 ttcacctgca tttccgaacg cacgtactca acttccagcg gattaatcgc cttccaggcg
    13561 tcgctatagc cttcaagcgc cagctttaac atgcggttga tgacgcgctg ttcggtatgg
    13621 gtaaactcgc gaccttccac tttggtcggg aagcgtccat cgccgccaaa caggttatcc
    13681 acggcgataa acaccagact cggtgaaaac accaccagcc ctgtgccgcg cagcggtttc
    13741 agatggataa ggttcaggtt ggtcggcacc ggcaggttgc gggcaaattc atggtacggc
    13801 tgaatgcgga tggccccgac ggttatatcc gggctacgac gcagcaggtt gaacagcccc
    13861 atacgaaaat ggcgggcaaa gcgctcatta atgatttcca gcgcctgcaa acgttcgcgc
    13921 acaacccgtc gttgggtatt cggatcgtac ggacgaatgt cactttcgcc gctaacactg
    13981 gctgtcggtt cgtctttgac ttcgctgtca ccattcaaca gcgcatcaat ttcagcttga
    14041 gaaagaatac tatcgcccat gtcgttatcg cagaataaaa gcggtataca gcacgtcggt
    14101 gacatcctgt ttcggttgcc cggcaacaag cggggtggaa agcgtggttt taatctcggc
    14161 aatcaggttt ttcttgcctt cttctgtcgc cagtacggca gcatcctgac gcgaaaacag
    14221 taacagcaaa cggctacgga cttccggcaa atactcactc agccgcgagc gggtagcttc
    14281 atctttcagg cgcagggtta tgccgatata aagcacgcga tccgcatcgc ccaaattgac
    14341 cgtgaaggta ttcagcgcgt agaagaccgg ggagggtacg acgcgttgct gcgctttgtc
    14401 gtcagcggca acctgatgcg aatgccagta gctgtaacct gcgctggcac aggccgcgag
    14461 ggtaatgaat accagaatcg ggatccaaag cgatcgcttg cttttcttgc ttatcgcgta
    14521 atcagtcatg tgttgcggtc ttcctgtgtc gctactgctt atcggctaat tatcctgcgt
    14581 tttgagcgca acaaagcggg gaaaagacgc ggattacggt gctacctctg acgttaggcg
    14641 aaaatatcaa cgccgctgtt gcctgttaca cgcccttgta aagagacggg aaccggaagc
    14701 gtatcgtcgt cttcccccgc cagaggttca tggtttactg tgcgttggct ttgctgttgt
    14761 tgggaagcgg cctgctgctg accactaaag ctttcgccac tgatgttgct ttgccctaac
    14821 tgaatgccac tttcggccag ctgcgtacgc agtaccggaa gcgctgcttc cagcgcggcg
    14881 cgtacatgct gatgcggtga aaccatctgg atttgcgcct ggttatcatc cactttgagg
    14941 gagatttgca cttcacctaa atcctgcggg tgcagacgca actctgcact ttgttgcccc
    15001 tggcgggtga acagcgaaat atgctggctt aatgattgtt gccattcgtg agaacccagc
    15061 ggtgcactca aaacaggcgc ggcgacggtg ggcagtggct gtgtctggtg tggagtaatt
    15121 agcgggctgg cggcagcggt caccggtgac ggtgtgctga tgacttccgc tttactctgg
    15181 gcttctgcta ccagcggtgt taatggctga gctggcgtgc cgggggcatc atcaggctgt
    15241 gctgttgtga gttgcgcaga agtcagtttt gtgaagagcg ttggtttctc tgccggtaac
    15301 acggttgacg gcacatcagt cactttgggc gtattgtcaa aacccggcaa catcgcaaaa
    15361 agggcgctca ggcttgcggt gacgtcttca ttcagatcat ccgctttttc gtcttttgtc
    15421 gtattttggt cagccaccgc agccaacgtc atcgtctgag cggtggttaa cggtgttgat
    15481 gtggattgtt cgtcgttgat gacaggcagt gtttcatcca cggggatcag taaatccgct
    15541 tgttgcgcgt cggcaagaat atcgctgatc agcggctcgc cttttgtcgt gggcttatct
    15601 gttgccacca gcaactgggg ggccgctttg tcggtagttg tctcgcctgc taatgcttcg
    15661 ctcaacaacg cgagaaaatc ttgtgcagca tcgctggctt tgccgccagg caatgtggtg
    15721 gtgtcaacgt cggcggtaat taagggcgct aagcgaatca ttcaggtttc ctcatggcgg
    15781 cgcgctgggc gaactcatcc atctttttct gatcgaggcg gttttctgca agcagtgccg
    15841 ccgtggatag ccgttcctgc agtgtctgcc aggcctgcaa acgttgtttc ttttctcgcc
    15901 agctgttcag ggcaatgtca actttctgcg tccactgatt aagttgctgg cgatgctgag
    15961 taatggcttt ttccagcgtc tggataaact gctgatagtt gatccagcgg ttgctggtca
    16021 tcccggcact catatcgctg ttgaggttat tgcgatattc attctgataa tcgatcagca
    16081 ttttgagctg ttcttccgcc tgctgacacc cgcgacgcat ttcacccagc aggcgcgcgg
    16141 catcctctac ctctttttct gccagatctt tcagggtcgc cagcgcgcca tgttctgcca
    16201 tctgccgtta tctcctgggt tatgacactg tcgggaaaat acgctccagc ccctggagag
    16261 acgcttccca gtccgcgcgt tcaaaaatgc cttgttgcaa atagccctcc agctgcggcc
    16321 acagggcgat ggctttgtcg agcatcggat cgctgccttt ggcatacgcg ccgacgctaa
    16381 ccagatcgcg gttacgctga aaactcgaca acagctgttt gaaggtgcgc actcgcgcgt
    16441 aatgttgctc actgatcaac gccgtcattg cgcggctgat cgacgcttca atatcgatag
    16501 ccggatagtg cccggcttcc gccagtcggc gagacagcac aatgtgaccg tcgaggattg
    16561 cccgcgcaga gtcggcaatg gggtcctgct ggtcatcgcc ttcagtgagc acggtataaa
    16621 acgcggtaat cgatccgccg ccgctaatgc catttccggc acgctcgacc agtgccggta
    16681 atttggcaaa caccgacggg ggataacctt tagtggcggg tggttcgcca atcgccagcg
    16741 caatttcacg ctgggccatc gcgtagcggg tgagggagtc cataatcagc aacacatgct
    16801 gaccacgatc gcgaaaatct tcggcaatgc gcgtggcata ggcggcaccc tgcattcgca
    16861 ggagaggaga aacatccgcc ggagcggcaa tcaccacgga gcgtgcacgc ccttcggcac
    16921 cgaggatatt ctcaataaaa tcttttactt cgcgtccgcg ttcaccaatc aaacccacga
    16981 caatgacatc ggcgcgggtg taacgtgcca tcatccccag cagcacactt ttaccaacgc
    17041 cggacccggc aaacagcccc atacgctgcc cacgcccaac ggtaagcagg gcattgattg
    17101 ggcgcacgcc ggtgtccagc acatgttcaa tcggtgtacg ttgcaacggg ttaaatggcg
    17161 gggtaatcag cgcaccggtt tccgtcgtat cgggggaggc catcgagcgg tttaccgctg
    17221 ccgtccagaa cacgacctaa taacgccgga ccgagcggta actgtttgcc gctttgcagc
    17281 ccttctgccg aaatgttttt ggcataaaca cgcgcgccgg gcaggacacc ttcgacttcc
    17341 tccagcggca ttaaaaacag ccgttgaccg ttaaagccaa cgacttcact ttctacttcg
    17401 tgcgtttcag tgccgttctg gcgctcaatc acacaggttg cgccgagcgg caattgtaat
    17461 ccggtggctt ccagcaccag cccggtagcg cgggttaatc gcccgtagcg acgtaccgca
    17521 ggcaactgcg ccattttggc ttcaaagtta tccagcgtgg ttagccagcg agtcaggcgc
    17581 gtggtcatta caccactcct ggtgctgcca gacggcagag ttcttgccag cgagtggcga
    17641 cactggcgtc gagatcgcct tcatcggcgg agactttaca gccgccagga tggagggtgg
    17701 gatcgccccg caagcgccag ccatgcaaac ttaaggtagc gccgagcata tcatccacac
    17761 gttgcagatc atccgggtgc acgcgcagct gtggtttacc gctgaataac ggttcttgct
    17821 gcaacaactg ttggatctgt ttgatgagtg ccgagttatc cactgttggc gtctgaccga
    17881 tgacctgacg tgctgcctcc agcgccatct gcatcaggcg cgaagca
//
LOCUS       DAJVSY010000080        17798 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.080, whole genome shotgun sequence.
ACCESSION   DAJVSY010000080 DAJVSY010000000
VERSION     DAJVSY010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17798
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.080"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..386
                     /locus_tag="OQQ19_002419"
     CDS             <1..386
                     /locus_tag="OQQ19_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="immunoglobulin domain-containing protein"
                     /protein_id="HCS1804008.1"
                     /translation="LAEVRQHTWSSGTNGVVAATFSLRLKGKPVSFVVPLAFVKNLDK
                     TLTVNTGALLTMSVSANGGMPPYKYAWKKDGQPVDGQTTDTFSKPGAQSADAGKYTCV
                     VTDSAEKAQSVTSVECTVTVSAAAG"
     gene            401..775
                     /locus_tag="OQQ19_002420"
     CDS             401..775
                     /locus_tag="OQQ19_002420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly chaperone"
                     /protein_id="HCS1804009.1"
                     /translation="MKKDLKTLALARLSGFRHKTVKVPEWGNVSVVLREPSAEAWYLW
                     QEVLNGDGEDDDTLSVVAKTRRNLEADVTLFCDVLCDTDLQRVFTPDDREQVLAVYGP
                     VHARLLRQALELIADAESARKK"
     gene            871..1080
                     /locus_tag="OQQ19_002421"
     CDS             871..1080
                     /locus_tag="OQQ19_002421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HCS1804010.1"
                     /translation="MWMEFDRISPLGDERGDIRNAQIVKAVFGAQGMNVALKDVMLCW
                     GEDEDKPEVDPFAALEDALSFAAQS"
     gene            1128..1388
                     /locus_tag="OQQ19_002422"
     CDS             1128..1388
                     /locus_tag="OQQ19_002422"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804011.1"
                     /translation="MATLRELIIKIVSFRGTHIDAFFRRASSAAHTNARGLITVDLFC
                     CTEAIARQVPEAGSEVLSSVIASGREVLTRGLIAGDDVLTRE"
     gene            complement(1523..3124)
                     /locus_tag="OQQ19_002423"
     CDS             complement(1523..3124)
                     /locus_tag="OQQ19_002423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001546148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66-like element ISEc49 family transposase"
                     /protein_id="HCS1804012.1"
                     /translation="MNIRIWSGILPCMDISALNTTNDIEKLRAMALAMVQEVMSENAE
                     KERELLEKSRRIQLLEEMLKLVRQQRFGKKCETLAGMQRSLFEEDVDADIAALTAHLD
                     KLLPQSPEEDEKASRSRPIRKPLPVHLPRVEKMIQPDTDHCPECDEPLHYIRDAVSEK
                     LEYIPAHFVVNRYVRPQYSCPCCQKVFSGEMPAHILPKSAVEPSVIAQVIINKYGDHL
                     PLYRQQQVFARSDVGLPVSSMADMVGAAGAALSPLAALLHRELINRPVVHADETTLKI
                     LNTKKGGKSCSGYLWAYVSGERTGPSVVCFDCRTGRSHEYPENWLQGWGGTLVVDGHK
                     AYRTLANKVPEITLAGCWAHARRGFADLYKISKDPRAAIAVKKIAGLYRLEKKISSRP
                     VEKIRQWRQRYARPILEELWSWLEEQEPQCSPGKALHKAIAYALSHRVELSRFLEDGA
                     VPLDNNVCERAIKNVVLGRKSWLFAGSQMAGERAAQIMSLLETAKRNGLEPHAWLTDV
                     LMRLPEWPEERLAELLPLEGFTFSG"
     gene            complement(3131..3523)
                     /gene="tnpB"
                     /locus_tag="OQQ19_002424"
     CDS             complement(3131..3523)
                     /gene="tnpB"
                     /locus_tag="OQQ19_002424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000950651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS1804013.1"
                     /translation="MLSPDNVFIAIKPVDMRRGIDSLTQYIQDELRSTWHEGAAFVFV
                     NKVRSRIKVLRWDKHGVWLCTRRLHKGSFRWPRANDAAWHLTPDEFNWLIAGVDWQQV
                     KGHDLTKWVWQNEPELRPENTKNTLLTQ"
     gene            complement(3510..3839)
                     /locus_tag="OQQ19_002425"
     CDS             complement(3510..3839)
                     /locus_tag="OQQ19_002425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001325657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence hypothetical
                     protein"
                     /protein_id="HCS1804014.1"
                     /translation="MSKPRWTIEQKRQHVAAWRASGLTRQQYCELNDIPFTSLREWPQ
                     DVAKAERRANEPTVLPVHIAPPLHADVPQPVTNEPVTLFLPGGVRMCCQPSQLTDVFR
                     ALKYAQS"
     gene            3884..7144
                     /locus_tag="OQQ19_002426"
     CDS             3884..7144
                     /locus_tag="OQQ19_002426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_304285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1804015.1"
                     /translation="MTEDPCEDDFPVTTLKISANSQSFQSEIQRASRMGSEYYRTLQN
                     GGRHAAAAAREQRRALAELNSQLTEIRGSAVGMAGAFAGAFATGHLISLADEWGSVNA
                     RLKQASQSSDEFSSSQKVLMDISQRTGTAFSDNAALFARSAASMREYGYSADDVLKVT
                     EAISTGLKLSGAGVAESGSVITQFSQALAQGVLRGEEFNAVNENGDRVIRALAAGMGV
                     ARKDLKAMADDGKLTADKVVPALISQLGILRDEYAAMPETVSGSITKVENAFMAWVGE
                     VNEACGVTKTLSGVLNGVAGQIDNVATAVGALVAVGVARYFGNMASGAMSATAGLVTA
                     ARNEVALAEAQFRGTQIATARARAAVYRAQQAVAAARGTEMQIAAEARLAATQERLNR
                     NIAARSAAQNALNSTTAVGSRLMSGALGLVGGVPGLVMLGAAAWYTLYQNQEQAWESA
                     RQYALTIDEIAHKTPSMSLPEASDNEGRTRAALTEQNRLIDEQASRVKSLQEKIAGYQ
                     YVLANPGWTTGDGFMINHLTSVKTVTEGLAQATEQLAVEQSRLALMQEKAQSIQDVLA
                     GLEDRRVALIRQQAAEQNKVYQSMLVMNGQHTEFNRLLGLGNELLQQRQGLVNVPLRL
                     PQATLDDKQQSALTKTERELALSRLKGEEKERVRLGYAADDLGFVGDPYQEARQRYIS
                     NALEAWRNNEANKPKSRGGKSETEKAEDSFSRLLKQQKEQLALAGQNTELAKLKYQTA
                     QGELKTLTEMQKQELLRNAALIDQQKIREQLRSREETLKNDNVAARASNEAELLGYGQ
                     GERLRERMRELQQIRDSFRQKDADLQSQYQTGDISEDFYRQALAQNAQYLSERLKEQE
                     AFYAESDVQRADWQKGLQEGFSNWVDNASDYASQAAQLATEGISGMVNNITEMLNGNK
                     VEWRSWASSVLQEISKVLMNAAIVNGIKTAANSMSGAGGFIGSIGSWLGGAVANAKGG
                     VYTSANLSAYSNSIVDTPTYFAFAKGAGLMGEAGPEAIMPLTRAADGSLGVRAVGSMN
                     GSAGLVYSPVYHIAIQNDGTNGQIGPEAAGSLVQLIDQRVQAVMLSMRRDGGMLSG"
     gene            7137..7478
                     /locus_tag="OQQ19_002427"
     CDS             7137..7478
                     /locus_tag="OQQ19_002427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1804016.1"
                     /translation="MAEIKTLHLVPREGMQVSEKPSVARVRFGDGYEQRRPTGLNARL
                     KTFQAVFRVTDEATRRWLEEFLSWHGGYRAFLWRPPKHNRTVRVVCREWSVTDNARYS
                     DFSCTIEQVVN"
     gene            7478..8176
                     /locus_tag="OQQ19_002428"
     CDS             7478..8176
                     /locus_tag="OQQ19_002428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HCS1804017.1"
                     /translation="MQDIHEESLSESVKSEQSPRVVLWEIDLTVQGGERYFFCNELNE
                     KGEPVTWQGRKYEAYPIDGSGFEMNGRGSSARPSLTVSNLFGLVTGMAEDLQSLVGAT
                     VVRRRVYARFLDAVNFVAGNPEADPEQELSDRWVVEQMSQLTAMTASFVLATPTETDG
                     ALFPGRIMLANTCMWTYRSDECGYTGGAVADEFDKPTTDIRKDRCSKCMRGCELRRNV
                     GNFGGFLSINKLSQ"
     gene            8187..8930
                     /locus_tag="OQQ19_002429"
     CDS             8187..8930
                     /locus_tag="OQQ19_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1804018.1"
                     /translation="MTQTESAILAHARRCAPAESCGFVISTPEGERYIPCVNISAEPE
                     AYFRIAPEDWLRAEMQGEIVALVHSHPGELPWLSEADRRLQIKSALPWWLVCRGEIHK
                     FRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIDMPDFHREDDWWRNGQNLYLDNMAVT
                     GFYRVPLSSAPPGDILLCCFGASVPNHATIYCGNGELLHHLPEQLSKRERYSEKWQRR
                     THSVWRHRHWHASAFTGICNDLAAASACM"
     gene            8828..9508
                     /locus_tag="OQQ19_002430"
     CDS             8828..9508
                     /locus_tag="OQQ19_002430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000246273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HCS1804019.1"
                     /translation="MATTNAFCLASPPLARICLHGDLQRFGRRLSLYVNTAAEAIRAL
                     SMQMPGFRRQMNEGWYQIRIAGDDTAPEAVYARLHKQLGEGTVIHIVPRLAGAGKGGL
                     QIVLGAAAIVGSFFTAGASMALWGSALAAGGFSATTMLFSLGASMILGGVAQMLAPKA
                     KTPDYRATDNGRQNTYFSSLDNMIAQGNPMPVPYGEMLVGSRRISQDISTRDEGGGGK
                     VVVIGRQG"
     gene            9749..13222
                     /locus_tag="OQQ19_002431"
     CDS             9749..13222
                     /locus_tag="OQQ19_002431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HCS1804020.1"
                     /translation="MGKGGGRAHTPREAKDNLKSTQMMSVIDAIGEGPIEGPVKGLQS
                     ILVNKTPLTDTDGNPVIHGVTAVWRAGEQEQTPPESFESSGSETVLGVEVTRAKPVTR
                     TITSANIDRLRVTFGVQSLVETTSKGDRNPSSVRLLIQLQRNGNWVTEKDVTINGKTT
                     SQFLASVILDNLPPRPFNIRMVRETADSTTDQLQNRTLWSSYTEIIDVKQCYPNTAIV
                     GMQVDAEQFGGQQMTVNYHIRGRIIQVPSNYDPEKRTYSGIWDGSLKPAYSNNPAWCL
                     WDMLTHPRYGMGKCLGAADVDKWALYAIGQYCDQTVPDGFGGTEPRMTFNAYLAQQRK
                     AWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDVVWPYTNSDVVVDDNGVGFRYSFSAL
                     KDRHTAVEVNYTDPQNGWQTSTELVEDPEAILRYGRNLLKMDAFGCTCRGQAHRAGLW
                     VIKTGLLETQTVDFTLGSQGLRHTPGDIIEICDNDYAGTMTGGRVLSIDAATRTLTLD
                     REVTLPETGTSAVNLINGSGKPVSVDITAHPAPDRIQVSTLPDGVETYGVWGLSLPSL
                     RRRLFRCVSVRENTDGTFAITAVQHVPEKEAIVDNGARFEPQSGSLNSVIPPAVQHLT
                     VEVSAADGQYLAQAKWDTPRVVKGVRFSLRLTSGSGEDSRLVTTAITADTEHRFSGLP
                     LGEYTLTVRAINSYGQQGEPATTTFRINAPAKPATIELTPGYFQITAVPRLAVYDPTV
                     QFEFWFSEAKIADTSQVETSARYLGTGSQWSVSGPHIKPGKDFWFYVRSVNLVGKSAF
                     VEASGRASNDAEGYLGLFREKIGKLHLAQGLWELIDNSQLADEMAEMKTTITETRNEI
                     TQTVSKTLEDQSATIQQIQRVQKDTNDDLAALYMLKVQKTKNGIPYVAGIGAGIEDTD
                     GQPLSNILLLADRIAMINPEDGNTTPLFVAQGNQLFMNDVFLKRLFAVSITSSGNPPT
                     FSLTPEGRLTARNADISGNVNANSGTLNNVTINENCRVLGKLSANQIEGDLVKTVGKA
                     FPRDSRAPERWPSGTVTVRIYDDQPFDRQIVIPAVAFSGAKHEREHTDIYSSCRLIVR
                     KNGAEIYNRTALDNTLIYSCVIDMPAGHGHMTLEFSVSAWLVNNWYPTASISDLLVVV
                     MKKATAGISIS"
     gene            13290..13889
                     /locus_tag="OQQ19_002432"
     CDS             13290..13889
                     /locus_tag="OQQ19_002432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ail/Lom family outer membrane beta-barrel
                     protein"
                     /protein_id="HCS1804021.1"
                     /translation="MRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLHARTNAPG
                     SDNLNGINVKYRYEFTDALGLITSFSYANAEDEKKTHYSDTRWHEDSVRNRWFSVMAG
                     PSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAW
                     GAGVQFNPTESVAIDIAYEGSGSGDWRTDGFIVGVGYKF"
     gene            13954..15361
                     /locus_tag="OQQ19_002433"
                     /pseudo
     CDS             13954..15361
                     /locus_tag="OQQ19_002433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422246.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
     gene            15447..15959
                     /locus_tag="OQQ19_002434"
     CDS             15447..15959
                     /locus_tag="OQQ19_002434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804022.1"
                     /translation="MGVTSGWVGSSAKSETGEQWMGAAGTKLGLSKPFMMSQMVGRTM
                     GCKIATEYYKWKSSDKVDNWGAVGADWPLEEKSKGTITNAASCGSGRLVGAVVTLSHF
                     LTNSTPTAAVYLAGGKAVNITVNVGGATQTMIYQGVVSGFQYYWSGSVSSAFVEAMKK
                     TGVPQDLKIS"
     gene            16035..16247
                     /locus_tag="OQQ19_002435"
     CDS             16035..16247
                     /locus_tag="OQQ19_002435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001114260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HCS1804023.1"
                     /translation="MPEKFFRTDADNNDVPMTAASWMALSEATEQAMFAKGVEINTRQ
                     LQMKAEVEALTDLKAIRSYVVGWPAG"
     gene            complement(16389..16713)
                     /locus_tag="OQQ19_002436"
                     /pseudo
     CDS             complement(16389..16713)
                     /locus_tag="OQQ19_002436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414822.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
     gene            complement(16849..17097)
                     /locus_tag="OQQ19_002437"
     CDS             complement(16849..17097)
                     /locus_tag="OQQ19_002437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI-like family protein"
                     /protein_id="HCS1804024.1"
                     /translation="MRIEICIAKEKMTKMPTGAVDALKEELTRRISKRYDDVEVIVKA
                     TSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH"
     gene            complement(17452..>17798)
                     /locus_tag="OQQ19_002438"
     CDS             complement(17452..>17798)
                     /locus_tag="OQQ19_002438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416381.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HCS1804025.1"
                     /translation="PAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRR
                     RGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIA
                     RVRSVEEILHAL"
BASE COUNT         4198 a         4290 c         5435 g         3875 t
ORIGIN      
        1 tcctggcgga agtgcgtcag cacacctggt catccggtac caacggtgtg gtggctgcaa
       61 cgttctcact gcgtctgaaa ggcaaaccgg tgtcctttgt ggtaccgctg gcgtttgtga
      121 aaaatctgga taagacactt accgtgaata ccggtgcgct gctgacaatg tcagtcagtg
      181 ccaacggggg aatgccgccg tataaatacg cctggaagaa ggatggtcag ccggttgacg
      241 ggcagacgac agacaccttc agtaagccag gtgcgcagtc cgctgatgcg gggaaatata
      301 cctgcgtggt gaccgattcg gcagagaaag cacagagtgt gacgtctgtt gaatgcaccg
      361 tgacagtgag cgcagctgcc ggataagggg atgggtcatc atgaaaaagg atctgaaaac
      421 gctggcgctg gccagactgt cagggtttcg tcataaaacg gtgaaggtgc cggaatgggg
      481 gaatgtcagc gtggtgctgc gggagccttc ggcagaggcc tggtatctgt ggcaggaagt
      541 gctcaatggt gatggagagg atgacgatac cctgtcggtg gtggcgaaaa cccgccgtaa
      601 cttggaagcg gatgtgacgc tgttctgcga tgtcctgtgt gatacggacc tgcagcgggt
      661 gttcactccg gacgaccgtg agcaggtgct ggccgtctat ggtccggtac atgcccggtt
      721 gctgcgtcag gcactggaac tgatcgctga tgcagagtcg gccagaaaaa agtagcccgc
      781 ccggaaattc gctttctgat gcgacttgcg ctccgtctgg ggcgcacctt atccgaactg
      841 cgccacagcc tgagtgcgag cgaggcgatg atgtggatgg agttcgacag gatatccccg
      901 ctgggtgatg agcgcgggga tatccgtaat gcacagatcg tgaaagcggt tttcggggca
      961 caggggatga atgttgcact gaaggacgtc atgctctgct ggggcgagga tgaggataag
     1021 ccggaggtgg atccgtttgc ggcgctggaa gacgcgctga gctttgcagc acagtcatga
     1081 atgatgagaa ccgctgaggc ggttttttta cgcccggaga aaggtgaatg gcgacgttac
     1141 gtgaactgat tatcaaaatt gtaagcttcc ggggaactca tattgacgcg tttttcaggc
     1201 gcgcgtcatc ggcggcgcat acgaacgctc gtggtttgat aacggttgat ttattttgtt
     1261 gcacagaggc gatcgccagg caggtaccgg aggcgggctc tgaagtactg agtagcgtga
     1321 tcgcgtcagg ccgcgaagta ctgactcggg gattaattgc aggtgatgat gtactgaccc
     1381 gggaatgact ccgggctgat tcaggttctt attcgctgtc agcccgcgtg gttgctggtc
     1441 tggctcattt cctgccgtca ggagttcaac tcccgactgc aggttatggc ccggtgcacg
     1501 aacacctgac ggcaggtatc actcacccgg agaaggtaaa tccctcaaga ggcagcaact
     1561 ctgccagtcg ctcctccggc cactccggca gacgcatcag gacgtctgtc aaccaggcat
     1621 gcggctccag accgttgcgt ttcgcggttt ccagcaagct cattatttgc gcggcgcgtt
     1681 ctcccgccat ctgcgaaccg gcgaacagcc acgattttct gcccagaacc acgtttttga
     1741 tggcccgttc acacacatta ttatccagcg gcaccgcacc atcttccagg aagcggctca
     1801 gttccacgcg atgagacagc gcataggcaa tagctttgtg taatgccttt cccggagaac
     1861 attgcggttc ctgctcttca agccatgacc acagttcttc cagtatcgga cgggcataac
     1921 gctgtcgcca ctggcggatt ttttccacgg ggcggctact gatcttcttc tcaagacggt
     1981 acaaccccgc gattttcttc acggctatgg cagcccgtgg atctttactg attttataca
     2041 ggtcggcgaa gcccctgcgg gcatgggccc agcatccggc cagcgtgatc tccggcactt
     2101 tgtttgccag agtccggtaa gctttatgtc cgtcgacaac cagcgtcccg ccccagccct
     2161 gaagccagtt ttcaggatac tcatggctac gtccggtccg gcagtcgaag cacacaactg
     2221 acggtcccgt cctttctcca ctgacgtatg cccacagata accggagcag gatttaccgc
     2281 ctttcttcgt gttcaggatc ttcagggtag tctcatctgc atgcaccacc ggacggttta
     2341 tcaactcgcg atggagtaac gccgccaggg gagataatgc ggcacccgcc gcgccaacca
     2401 tgtcagccat cgaactgacg ggcagcccga catctgaacg ggcaaagacc tgttgctggc
     2461 gatacagagg caggtggtca ccgtatttat tgatgatcac ctgtgcgatg actgatggct
     2521 caacggcact tttcgggagg atatgtgccg gcatttcacc gctgaacacc ttctggcaac
     2581 agggacaact gtattgcgga cggacataac ggttcaccac aaagtgagcg ggaatatact
     2641 ccagcttttc actcaccgca tcgcggatat agtgcagcgg ctcgtcacat tcagggcaat
     2701 ggtcagtgtc cggctggatc attttttcca cccgtggaag atgaaccggt aagggtttgc
     2761 gtatcgggcg tgaacgggac gctttttcat cttcttcagg ggattgcggg agcagtttat
     2821 ccagatgtgc ggtaagcgcg gcgatatcgg catcaacatc ctcttcgaat agggagcgtt
     2881 gcataccagc cagcgtttca catttttttc cgaagcgctg ttgacgaacc agtttcagca
     2941 tttcttccag aagctggatg cgccggcttt tctccagtaa ttcccgctct ttttcggcat
     3001 tctccgacat gacttcttgt accatggcaa gtgccatagc acgcagtttt tcgatgtcat
     3061 tcgtggtgtt gagagcggag atatccatac aggggagtat accactccag atacggatat
     3121 tcattatttt tcactgagtt agcagtgtat ttttcgtgtt ttcagggcgc agttcaggtt
     3181 cattctgcca gacccatttc gtcaggtcat gtcccttaac ctgctgccag tcaacaccgg
     3241 caatcagcca gttaaactcg tcgggagtga ggtgccaggc agcgtcattt gcacgtggcc
     3301 agcggaagct gcctttgtgc agacggcggg tacacaacca caccccgtgt ttatcccacc
     3361 ggagaacttt gatacgcgaa cggactttgt taacaaagac gaaggcggct ccctcatgcc
     3421 atgtcgaccg gagttcatcc tgtatatact gcgtcagtga gtcgatgccc cggcgcatgt
     3481 caacaggttt aattgcgatg aagacattat caggactgag catatttgag tgccctgaag
     3541 acatcggtaa gttgtgacgg ctgacagcac atccgtactc caccgggaag gaagagcgtg
     3601 actggctcat tcgtgacggg ctgtggtaca tcagcatgca gtggtggcgc aatatgaacg
     3661 ggaagaacgg tcggttcatt tgcccggcgt tcagcttttg cgacatcctg cggccattcg
     3721 cgaagtgatg tgaagggaat atcgttgagt tcacagtatt gctgacgtgt aagaccactg
     3781 gcgcgccagg cagcaacgtg ctgccttttc tgttcaatgg tccatcgggg ttttgacatc
     3841 gattatctcc ggtaagttgg tgaatggatg tcggtaatac taactgaccg aagatccctg
     3901 tgaagatgac ttccccgtaa cgacactcaa aatttcggca aattcacagt cattccagtc
     3961 ggagatccag cgggcgtccc gtatgggcag tgaatattac cggaccctgc agaatggcgg
     4021 acgtcatgcc gctgctgccg cacgggaaca gcgccgcgcc cttgcagaac tgaacagtca
     4081 gttgacggaa attcgcggtt ctgctgtcgg aatggctggc gcatttgccg gtgcctttgc
     4141 caccggacac ctgatttcgc tggccgatga gtggggttcc gtgaatgccc gtctgaaaca
     4201 ggcatctcag tcatcggatg aattctcgtc atcacagaaa gtgctgatgg atatcagtca
     4261 gcgaacaggt accgcgtttt cggataatgc ggccctgttt gcccgttcgg ctgcctcgat
     4321 gcgtgaatat ggttacagtg ctgatgatgt gctgaaggtg acggaggcca tttcgacagg
     4381 actgaaactg tcaggggctg gagttgcgga atccggttcg gtgatcaccc agttcagcca
     4441 ggcactggca cagggtgtac tgcgtggcga agaatttaat gctgttaacg aaaatggcga
     4501 ccgggtgatc cgcgcgcttg ctgcggggat gggtgtggcc cgtaaagatc tgaaggcaat
     4561 ggcggatgac ggaaaactga cagcggataa agtggtccct gcgttaatca gccagctggg
     4621 gatattacgt gatgaatatg cggccatgcc ggaaacggtt tccggtagta tcacgaaggt
     4681 ggaaaacgcc tttatggcct gggtgggcga agtgaatgag gcctgcgggg tgacaaaaac
     4741 gctctccggc gtgctgaacg gtgttgccgg acagattgat aatgtggcaa cagctgtggg
     4801 ggcgctggtt gccgtcgggg ttgcccggta ctttggcaat atggcctccg gagcgatgtc
     4861 tgccacggca ggacttgtga cggctgcacg taatgaagtt gcactggcgg aagcacagtt
     4921 caggggaacg cagattgcca cggcgcgggc aagggcagcc gtgtaccgtg ctcagcaggc
     4981 tgtggcggca gcccgcggga cggagatgca gattgctgca gaggcccgtc tggcggccac
     5041 acaggaacgc ctgaacagaa atattgctgc cagaagcgcc gcccagaatg cgctgaacag
     5101 tacaacggcg gtgggctcac gtctgatgag cggtgcgctg gggctggttg gtggcgtacc
     5161 cggactggtg atgctggggg ctgcagcatg gtacacgctg taccagaatc aggagcaggc
     5221 ctgggagtct gcacgccagt atgcactgac gatagatgaa atcgcgcata aaacgccgtc
     5281 aatgtctttg cctgaagcct cagataatga aggacgaaca cgggcggcgc tgacagagca
     5341 gaaccggctg attgatgaac aggctagtcg ggtgaaatcc ctgcaggaaa aaatcgcagg
     5401 atatcagtat gttctggcga acccgggctg gacgaccggt gacggattca tgataaacca
     5461 tctgacctcg gtgaagaccg taacggaagg gcttgctcag gcaacagagc agcttgccgt
     5521 tgagcagtcc cgtctggcac tgatgcagga aaaagcgcag tccattcagg atgtgcttgc
     5581 cgggctggaa gaccgtcgtg tggcgttaat tcgtcagcag gcggcagagc agaataaggt
     5641 gtaccagtcc atgctggtta tgaacggtca gcatacggaa ttcaaccgtc tgctggggct
     5701 gggtaatgaa ctgcttcagc agcggcaggg actggtgaat gtgccgttac ggctgccaca
     5761 ggccactctg gatgataaac agcagagtgc cctgacaaaa acagagcgtg agctggccct
     5821 gtccagactg aaaggggaag aaaaagagcg tgtccgactg gggtatgcgg cggatgacct
     5881 cggttttgtg ggtgatccgt atcaggaggc gagacaacgt tatatcagta atgccctgga
     5941 agcctggcgc aataacgagg cgaataaacc caaatcccgg ggtggaaaat cagagacgga
     6001 aaaagcggaa gacagttttt cccggctgct gaagcagcag aaagagcaac tggcactggc
     6061 ggggcagaat acagagctgg cgaagctgaa ataccagact gcgcagggcg aactgaaaac
     6121 cctgacggag atgcagaagc aggaactgct gcgcaatgcg gccctgattg accagcaaaa
     6181 aatccgggag cagttgcggt cccgggaaga gaccctgaag aatgataatg tggctgctcg
     6241 tgcatcaaat gaagcggaac tgctggggta cgggcaggga gagcggctcc gtgaacgcat
     6301 gcgggagttg cagcagatcc gcgacagttt ccgccagaag gatgcggacc ttcagtctca
     6361 gtatcagacc ggggatatca gtgaggattt ttacagacag gctctggcac agaacgcgca
     6421 gtatctgagt gaacgtctga aagagcagga agccttttat gccgaatcgg atgtgcagcg
     6481 tgcggactgg cagaaagggc tgcaggaggg attcagtaac tgggtggata atgcgtccga
     6541 ttacgcctca caggcagcac agcttgcgac ggagggtatc tcagggatgg tgaataacat
     6601 cacggagatg ctgaacggaa ataaagtgga atggcgcagc tgggcctcat cagtgctgca
     6661 ggaaatatca aaagttctta tgaatgccgc gattgtcaac gggatcaaga cggcggcaaa
     6721 cagtatgtcc ggagcgggag gatttatcgg cagtattggt agctggctgg gcggtgcggt
     6781 ggccaatgca aaaggcggtg tgtatacctc ggcaaacctg agtgcgtaca gcaacagtat
     6841 tgtggatacg cccacgtact ttgcctttgc aaaaggggcg ggactgatgg gggaggccgg
     6901 tcctgaagcc attatgcccc tgacccgggc ggcggatggc tcgctgggtg tgcgagcggt
     6961 gggcagtatg aacggcagtg caggtctggt gtattccccg gtctaccata tcgccattca
     7021 gaatgacggg actaatggcc agatagggcc ggaagctgcg ggcagccttg tgcaactgat
     7081 tgaccagcgg gtgcaggcgg tgatgctgtc catgcgacgt gacggaggaa tgctgagtgg
     7141 ctgagataaa aacgctgcat ctggtcccgc gtgaagggat gcaggtgagt gagaaaccgt
     7201 cggtggcgag ggtacggttt ggtgacggtt atgaacagcg ccgcccgacg ggacttaatg
     7261 cccgactgaa gacgtttcag gcggtgttcc gggtgacgga tgaggcgacc cggcgatggc
     7321 tggaagagtt tttatcgtgg catggtggtt accgtgcctt tttgtggcga ccgccgaaac
     7381 ataaccggac ggtgagggtg gtatgccggg agtggagcgt cacagataac gccaggtaca
     7441 gtgatttcag ttgtacgatt gagcaggtgg tgaactgatg caggatattc acgaagaaag
     7501 tctgagcgag tcggttaaat cagagcagtc accgcgggtg gtactctggg aaattgacct
     7561 gacggtgcag ggtggtgagc ggtatttttt ctgtaatgag ctgaatgaaa aaggggagcc
     7621 ggtcacctgg caggggcgta agtatgaggc atacccgatt gacggcagcg gctttgagat
     7681 gaacggccgg ggcagcagtg ccagaccgtc gctgacggtg tccaatctgt tcggtctggt
     7741 caccgggatg gcggaagacc tgcagagtct ggtgggggcc acggtggtcc gccgccgggt
     7801 gtatgcccgt tttctggatg cggtgaattt cgttgcgggc aatccggagg cggacccgga
     7861 gcaggagctg agtgaccgct gggtggtgga gcagatgtcg cagctgacag ccatgacggc
     7921 ctcgtttgtg ctggctacac cgaccgagac ggacggggcg ctgtttcccg gtcgtatcat
     7981 gctggcgaac acctgtatgt ggacctaccg ctctgatgag tgtggttaca cgggcggggc
     8041 tgtggcggat gagttcgata aacccaccac ggatatccgt aaggacagat gcagcaagtg
     8101 catgcgcggg tgtgaactgc gcaggaatgt cggcaatttt ggcggtttcc tttccattaa
     8161 taaactttcg cagtaaatcc cgatttatga cacagactga atcagcgatt ctggcgcatg
     8221 cccggcggtg tgcgcctgcg gagtcgtgcg gcttcgtgat aagcacgccg gagggggagc
     8281 ggtatatccc ttgtgtgaat atttctgcag agccggaggc gtattttcgt atcgcaccgg
     8341 aagactggct gcgggcagag atgcaggggg agattgtggc actggtccac agtcatcccg
     8401 gtgagctgcc ctggctgagc gaggctgacc ggcggctgca gataaaaagc gcactgccct
     8461 ggtggctggt ctgccggggg gaaattcata aattccgctg tgtgccacat ctgacaggac
     8521 ggcgctttga gcacggggtg acggactgtt acacgctgtt ccgggatgca taccatctgg
     8581 cgggaattga tatgccggat tttcatcgcg aggatgactg gtggcgcaac ggccagaacc
     8641 tgtacctgga caatatggcg gtcaccggct tttaccgggt gcccctgtcc tctgcaccgc
     8701 cgggcgatat tctgctgtgc tgctttggtg cttcggtacc gaaccatgcc accatttact
     8761 gcggcaacgg tgagctgctt caccatctgc ctgaacaact gagtaaacgg gagaggtatt
     8821 ccgaaaaatg gcaacgacga acgcattctg tctggcgtca ccgccactgg cacgcatctg
     8881 ccttcacggg gatttgcaac gatttggccg ccgcctcagc ctgtatgtga acacggcagc
     8941 ggaagccatt cgcgccctgt cgatgcagat gccgggcttt cgccgtcaga tgaacgaagg
     9001 ctggtaccag atacgtattg ccggtgatga cacggcaccg gaggcggtgt atgcccgtct
     9061 tcacaaacag ctgggtgagg gaacggtcat ccacattgtg ccgcgactgg ccggggccgg
     9121 aaagggtgga ctgcagattg tgttgggggc ggcagccatc gtgggctctt tcttcactgc
     9181 cggggcatca atggcgttat ggggttcagc cctggcagcc ggtggttttt ctgccaccac
     9241 gatgctgttt tcacttggag ccagcatgat tctgggcggt gtggcccaga tgctggcccc
     9301 gaaggcaaaa acaccggatt accgcgcaac ggataacggc agacagaaca cgtacttttc
     9361 ctcgctggat aacatgattg cccaggggaa cccgatgccg gtgccttacg gggaaatgct
     9421 ggttggctcc cgccgtatat cccaggacat cagcacccgt gatgaaggcg ggggcggaaa
     9481 ggtcgtggtt atcgggcgac agggataaaa cataaaaaaa tcccgcagtg atcgcggagc
     9541 tgcggggaca gacaaatgaa gatcaatgtg aaggagttgt ttttgttact cgggcaaaaa
     9601 aacactaacg cagcgaaatt ataagcgcca cagtcagtgt gtgaaaatgt gaagatattc
     9661 agaaatttta ttccgtcatg acgcaggcac ccggtgaggt gcctgttgtt tttgtgagtg
     9721 aacaattatc acggtaagag gtgatgtaat gggcaaaggt ggcggcaggg cgcacacacc
     9781 gcgtgaggcg aaagacaatc tcaaatccac gcagatgatg agcgtgattg atgcgattgg
     9841 tgagggaccg atagaaggcc cggtgaaagg cctgcagagt attctggtga acaaaacccc
     9901 gctgacggac acggacggta atcccgtgat acacggtgtg accgcggtct ggcgtgccgg
     9961 ggagcaggag cagacaccac cggaaagctt tgagtcctcc ggctctgaaa ctgtactggg
    10021 tgtcgaagtg accagggcaa aaccggtaac acgcaccatt acgtcagcga acattgaccg
    10081 cctgcgggtg accttcgggg tgcagtcact ggtggagacc acgtcaaagg gtgaccgtaa
    10141 tccgtcctct gtccgtctgc tgattcagtt acagcgtaac ggtaactggg tgacagaaaa
    10201 ggatgtcacc attaacggca agaccacctc acagttcctt gcgtcggtga ttctggataa
    10261 tctgcctccc cgccccttta acatccggat ggtcagggag acggcggaca gcaccacgga
    10321 ccagctgcag aacagaacgc tgtggtcgtc atacaccgaa atcatcgatg tgaaacagtg
    10381 ctacccgaac acggccattg tggggatgca ggtggatgcg gagcagtttg gtggtcagca
    10441 gatgacggtg aactaccata tccgcggtcg catcatccag gtgccgtcaa actatgaccc
    10501 ggaaaaacgc acgtacagtg gtatctggga cggcagtctg aaaccggcat acagcaacaa
    10561 cccggcctgg tgcctgtggg acatgctgac tcacccgcgc tacggcatgg gaaaatgtct
    10621 gggggcggcg gatgtggaca agtgggcgct gtatgccatc gggcagtact gcgaccagac
    10681 ggtcccggat ggtttcgggg ggaccgagcc gcggatgacc tttaatgcgt acctggcaca
    10741 acagcgtaag gcgtgggacg ttctcagtga tttctgctct gcgatgcgct gtatgccggt
    10801 atggaacggt cagacgctga cgttcgttca ggaccgcccg tcggatgtgg tgtggccgta
    10861 caccaacagc gatgtggtgg tggatgataa cggcgtggga ttccgctaca gcttcagtgc
    10921 cctgaaggac cggcacacgg cggtggaggt gaattacacc gacccgcaga acggctggca
    10981 gacctccacg gaactggtgg aagacccgga agccatactg cgctacggac gcaacctgct
    11041 gaagatggat gcgtttggct gtacctgccg cggtcaggct caccgtgcag gtctgtgggt
    11101 gataaagacc ggactgctgg aaacgcagac ggtggacttc acgctcgggt cacaggggct
    11161 gcgtcacaca ccgggtgaca ttattgaaat ctgtgataac gactatgctg ggactatgac
    11221 cggcggacgt gtcctgtcca ttgatgctgc cacccgcacc ctgacgctgg accgtgaggt
    11281 taccctgccg gagacaggta catcggcggt gaacctgatt aacggcagtg gtaagccggt
    11341 gagtgtggac atcaccgcac accccgcgcc ggaccggata caggtcagta ccctgcctga
    11401 tggtgtggag acatacgggg tgtggggact ctccctgccg tcactgcgcc gtcgcctgtt
    11461 ccgctgtgtc tccgtccggg aaaacacgga tggcaccttt gccatcacgg cggtgcagca
    11521 cgtaccggaa aaagaagcca tcgtggataa cggtgcccgc tttgagccgc agtcaggctc
    11581 cctgaacagc gtcatcccac cggcagtgca gcacctgacg gtggaggtga gcgcagctga
    11641 cggccagtat ctggcacagg cgaaatggga cacgccgcgg gtggtgaagg gggtgcgctt
    11701 cagtctgcga ctgaccagcg gaagcggaga agacagccgt ctggtgacca ccgctatcac
    11761 tgcggataca gagcatcgtt tcagtggtct gccgctcggg gaatacaccc tgacagtcag
    11821 ggcaattaac agttatggcc agcagggcga accggccacc accaccttcc ggattaacgc
    11881 gccagcaaaa cccgccacca ttgaactgac gccggggtat tttcagataa cagcggtacc
    11941 gcgtcttgcg gtgtatgacc cgacggtaca gtttgagttc tggttttcgg aggcaaaaat
    12001 cgcagacaca tctcaggtgg aaacctctgc ccgttatctg gggaccggca gtcagtggag
    12061 tgtatccggc ccgcacatta agcccgggaa ggatttctgg ttttacgtgc gcagcgtcaa
    12121 cctggtgggg aaatctgctt ttgtggaggc cagtggacgg gccagcaatg atgcagaagg
    12181 gtatctgggg ctgtttcggg aaaaaatagg aaaactgcat ctggctcagg ggctgtggga
    12241 gctgatagac aacagccagc ttgcggatga gatggcggag atgaagacca ccatcaccga
    12301 aacccgcaat gaaatcacac agacggtcag taaaacgctg gaggaccaga gcgccaccat
    12361 acagcagata cagcgcgtgc agaaggacac aaatgatgac cttgctgcac tttacatgct
    12421 gaaggtacag aaaacaaaaa atggcatacc ctatgttgcc ggtattggag cggggattga
    12481 ggatactgat ggccagcccc tgagcaacat actgctgctg gctgaccgta ttgcgatgat
    12541 taacccggag gacggcaaca ccacgccgtt atttgtggcg caggggaatc agttgttcat
    12601 gaacgatgtg ttcctgaagc ggctgtttgc ggtgagtatc acctcgtccg gcaatccccc
    12661 gacgttttcc ctgacgccgg agggcaggct gaccgcaaga aatgctgata tcagcggtaa
    12721 cgtgaatgcg aactccggga cgctcaacaa cgtcacgatt aacgagaact gccgggttct
    12781 gggaaaactg tccgcgaacc agattgaagg cgatctcgtt aaaacagtgg gtaaggcttt
    12841 tccgcgggac tcccgggcac cggagcggtg gccatcaggg accgttaccg tcaggattta
    12901 tgacgatcag ccttttgacc ggcaaattgt tattccggcg gtggcattca gcggcgctaa
    12961 gcatgagaga gagcatactg atatttactc ctcatgccgt ctgatagtgc ggaaaaacgg
    13021 tgctgaaatt tataaccgta ccgcgctgga taatacgctg atttacagtt gcgttattga
    13081 tatgcctgcc ggtcacggtc acatgacgct ggagttttcg gtatcagcat ggctggtgaa
    13141 taactggtat cccacagcaa gtatcagcga tttgctggtt gtggtgatga agaaagccac
    13201 cgcaggcatc agtatcagct gaattttata acccatatac gggcgccaga aatggcgcct
    13261 tttttattgc agaaaagcga gaggtaatta tgcgtaaagt ttgtgcagcc attttgtccg
    13321 cagccatctg tctggctgta tccggtgcgc ctgcatgggc gtctgaacat cagtccacac
    13381 tgagcgcggg gtatcttcat gcccgtacga acgctcccgg cagcgataat ctgaacggga
    13441 ttaacgtgaa ataccgttat gagtttacgg acgcgctggg gctgattacg tccttcagtt
    13501 atgccaatgc tgaagatgag aaaaaaacgc actacagcga tacccgctgg catgaggatt
    13561 ccgttcgtaa ccgctggttc agcgtaatgg cggggccgtc tgtgcgcgtg aatgaatggt
    13621 tcagcgcgta tgcgatggcg ggtgtggctt acagccgtgt gtcgactttc tccggggatt
    13681 atctccgcgt aactgacaac aaggggaaaa cgcacgacgt gctgaccgga agtgatgacg
    13741 gtcgccacag caacacgtct ctggcgtggg gggctggcgt gcagtttaac ccgaccgaat
    13801 ccgtggccat tgatattgct tatgaaggtt ccggcagtgg cgactggcgc actgacggtt
    13861 tcatcgtggg tgtcggctat aaattctgat tagccaggta acacagtgtc atgacagccc
    13921 gccggttcag gcgggctttt ttgtggggtg aatatgacag taaagatttc tggtgtactg
    13981 aaagacggca caggaaaacc ggtacagaac tgcacaatcc agctgaaagc aaaacgtaac
    14041 agtaccacgg tggtggtgaa cacgctggcc tcagaaaatc cggatgaagc cgggcgttac
    14101 agtatggacg ttgagtatgg tcagtacagc gttattctgt tggtggaggg attcccgccg
    14161 tcacatgccg ggactatcac cgtgtatgaa gattctcaac ccggtacgct gaatgatttt
    14221 ctcggtgcca tgactgagga tgatgcccgt ccggaggcac tgcgtagctt tgaactgatg
    14281 gtggaagagg tggtgcgtaa cgcagaggag gcgaagaaga atgccggaga ggcggagacg
    14341 tcagcgagga atgccggcat atcagccagt caggcagaag agagcgctgc aaatgctgac
    14401 acttcagcag gggatgcatc ggagtcagcc cggcaggcgg cagaaagtgc agcctcagca
    14461 aagcagtcag aggaggcgtc ctcgtcctcg gcctctgcgg ccgctcaaaa agccagtgag
    14521 tcattacaaa gtgcaacaga tgctgagttg tcaaaaaaga cggcagaaag tgcagccggt
    14581 aatgcagtca gggatgcaac gaccgcaaca gaaaaagccc gggagtcagc agaaagcgca
    14641 cagtcagcgg aacaaagcag gatagcggcg gaagaggccg taaaccgaat ccccaccgtg
    14701 gtgggacctc ccgggccaaa gggggaaccg gggcccgcgg gtcctcaggg gccgaaggga
    14761 gataaaggag agcgtggcga caccggcccg gcaggggcca aaaggtgaca aaggcgatcc
    14821 gggagtggct ggaccagcag gtccggcagg tgcgccgggg ccgaaaggcg ataaaggtga
    14881 tccgggagta gcaggtccag caggtccggc ggggccacag ggaccgaagg gagacacagg
    14941 agcccccggg caaggaacag aactgcttac tactgccaat acatggactc aggcacaaac
    15001 ttttaatggt ggtattaatg gcaatttgac ggtgaccgga aacggctcat ttaacgatat
    15061 tcagatccgt tcggataaac gcaacaagcg aaatctggta aaactggata atgcgttaga
    15121 tcgtctggag gcacttactg gttatcttta cgagatacag tactctgccg acggttggca
    15181 aacgtcggtt ggtttaattg ctcaggatgc acaaaaagca ttgcctgaac tggtaactga
    15241 agacgcagac gttatatctg gtgaaaaacg tctgcgtctt aactacaacg gcataattgc
    15301 attgttagtc gagggcttta aaacacttcg tcatgagatt aaagaactcc gggagaagta
    15361 aacgacagct gttgtagttt ctggtttcta ctgaatttaa attgtggggt gacactcacc
    15421 ccacgcattc agaaggggga gatgagatgg gggtaacatc gggatgggta ggctcttcgg
    15481 ctaagagcga aacaggtgag cagtggatgg gagccgccgg aaccaaactg ggactgagta
    15541 aaccttttat gatgagccaa atggttgggc gaactatggg ctgtaaaatt gcaactgagt
    15601 actataaatg gaaatcctct gacaaggttg ataactgggg cgcagttggc gctgactggc
    15661 ctttagaaga aaaaagtaaa ggtacaatta caaacgccgc aagctgcgga tcagggaggc
    15721 tggtaggggc tgtcgttaca ctttctcact ttttgacgaa ctctacaccg acagctgctg
    15781 tttatttagc cggtggtaaa gcagttaaca tcaccgtaaa cgtaggtggt gctacacaaa
    15841 ccatgattta tcagggcgtt gttagtgggt tccagtatta ctggtcaggt tctgttagtt
    15901 ccgctttcgt ggaggcaatg aaaaagacgg gagtacccca ggatctaaaa attagttaaa
    15961 tggtaaataa ataattttaa aaacttcacg ttctacatac cggagacgcc ggatatatag
    16021 gatattgttt taagttgcca gagaaatttt tccggacgga tgctgataat aatgatgtgc
    16081 caatgacggc agcatcatgg atggcactga gtgaagcgac agagcaggcg atgtttgcga
    16141 agggagtgga gattaataca cggcagttgc agatgaaagc cgaggttgag gcgctgacag
    16201 acctgaaggc gatccgcagt tatgttgtcg gatggcctgc tggctgaata aaaaaacggg
    16261 accacgacca gtcccggaac catgagtttt agggtattag tttgttatca tagttagcgt
    16321 gctaagtatg ccatgtcagg ttgattagtg aagtgatgtt gttcgcattt ttgcacggcg
    16381 gagaatattc agatttttgg aaatccatat ttttcccgtg cgcgattaca tgcttcattt
    16441 acgatgctat tttcgccgga cattgcgaat tccctgcatg tggacggttt ttgtaaacag
    16501 agcaatatgc gttttctccg ggggggccgg caagagcgcc acatcgggga tttttctgat
    16561 tggtgccgcg catacagcga tgaaaaggag atatttgctc agtgagactg accgaaacct
    16621 ttccgccagc atcgtcagct tctgcccagt aaaaagagac gcggaaaatg cacaacaggc
    16681 accacacgtc atgcatggat tcagattgct cataattcac cagtacagct ataaatcgta
    16741 aagagaacag cggtacatcg tatgtaagaa cgtaccgcgg ctggctggtg aacttccgat
    16801 agtgcgagta ttgaatgatt tccagccgtt accgatttta cgtgctaatt agtgaacaaa
    16861 ccactcgtca gcagactccc aggtatcttt cagagtttcc tgaacaaaag ttttagctga
    16921 atctttatcg gcggtgcgcg taacagaaag gccatcgttg ctggtagctt ttacgatcac
    16981 ctctacatcg tcataacgtt tactgatgcg tcgggttaat tcttccttta acgcatccac
    17041 agcaccggtt ggcattttag tcattttttc tttggctatg cagatttcaa tacgcataaa
    17101 agtccctcta cactgtgttt gtatacagta tcatttttaa ctgtatggat aaacagtatt
    17161 aagggtgaag gaaagtgatt ttttggggca tgcatggggc aaaaatattt gttgtggggc
    17221 attttggggc atgattggga cactttgtta catatgaact ttgccgattt ttatatgaca
    17281 tggaaataca acgctttgat tcttctaaat aaaaaacatg ctcttgggcg ttctttagtg
    17341 atttttaaaa attccgtatc acgcagttaa agtggcgggc atactcttca aggctggtga
    17401 tccccaaccg cacccattta ggatgcgacc attgcggtag accgatgtaa atcataacgc
    17461 gtgaaggatc tcttccacgc tacgcacacg ggcgatgcgc gggtagatat gattaatgct
    17521 gttattgtgt tgctcggcgc tggcggcact acaggcgtct tcggcaatca ccagattaaa
    17581 gccaagttcc caggcattgc gggcggtgga ttcaacaccg atattggtcg agatcccaca
    17641 taacactatt gtatcgatac ctcggcggcg cagttgcaac tccagatccg taccgtaaaa
    17701 cgcaccccac tgacgtttga tgatttcgat atcactgtca gttgcaccta atgcagctgg
    17761 atgttgccac cagttttcgg gcaacacttt agcggggg
//
LOCUS       DAJVSY010000081        17501 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.081, whole genome shotgun sequence.
ACCESSION   DAJVSY010000081 DAJVSY010000000
VERSION     DAJVSY010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17501
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.081"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..321)
                     /locus_tag="OQQ19_002439"
     CDS             complement(<1..321)
                     /locus_tag="OQQ19_002439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706665.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BAX inhibitor (BI)-1/YccA family protein"
                     /protein_id="HCS1804026.1"
                     /translation="MESYSQNSNKLDFQHETRILNGIWLITALGLVATAGLAWGAKYL
                     EITATKYDSPTMYVAIGLLLVCMYGLSKDINKINAVIAGVIYLFLLSLVAIVVASLVP
                     VYAII"
     gene            complement(527..1231)
                     /locus_tag="OQQ19_002440"
     CDS             complement(527..1231)
                     /locus_tag="OQQ19_002440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HCS1804027.1"
                     /translation="MDRFPRSDSIVQPRAGLQTYMAQVYGWMTVGLLLTAFVAWYAAN
                     SAAVMELLFTNRVFLIGLIIAQLALVIVLSAMIQKLSAGVTTMLFMLYSALTGLTLSS
                     IFIVYTAASIASTFVVTAGMFGAMSLYGYTTKRDLSGFGNMLFMALIGIVLASLVNFW
                     LKSEALMWAVTYIGVIVFVGLTAYDTQKLKNMGEQIDTRDTSNLRKYSILGALTLYLD
                     FINLFLMLLRIFGNRR"
     gene            complement(1368..1820)
                     /gene="moaE"
                     /locus_tag="OQQ19_002441"
     CDS             complement(1368..1820)
                     /gene="moaE"
                     /locus_tag="OQQ19_002441"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase catalytic subunit MoaE"
                     /protein_id="HCS1804028.1"
                     /translation="MAETKIVVGPQPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLG
                     DSVKALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFAGVTSA
                     HRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARESDQQAAKRW"
     gene            complement(1822..2067)
                     /gene="moaD"
                     /locus_tag="OQQ19_002442"
     CDS             complement(1822..2067)
                     /gene="moaD"
                     /locus_tag="OQQ19_002442"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase sulfur carrier subunit"
                     /protein_id="HCS1804029.1"
                     /translation="MIKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWAL
                     ALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVTGG"
     gene            complement(2060..2545)
                     /gene="moaC"
                     /locus_tag="OQQ19_002443"
     CDS             complement(2060..2545)
                     /gene="moaC"
                     /locus_tag="OQQ19_002443"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HCS1804030.1"
                     /translation="MSQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMI
                     IDGRHHKGDVFATARITGIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETL
                     CRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVEAD
                     D"
     gene            complement(2548..3060)
                     /gene="moaB"
                     /locus_tag="OQQ19_002444"
     CDS             complement(2548..3060)
                     /gene="moaB"
                     /locus_tag="OQQ19_002444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein B"
                     /protein_id="HCS1804031.1"
                     /translation="MSQVSTEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHV
                     VDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVEGF
                     GEVFRMLSFEEIGTSTLQSRAVAGVANKTLIFAMPGSTKACRTAWENIIAPQLDARTR
                     PCNFHPHLKK"
     gene            complement(3082..4071)
                     /gene="moaA"
                     /locus_tag="OQQ19_002445"
     CDS             complement(3082..4071)
                     /gene="moaA"
                     /locus_tag="OQQ19_002445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HCS1804032.1"
                     /translation="MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPSGVTNK
                     GFLTVDEIRRVTRAFASLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNG
                     YRLERDVANWRDAGLTGINVSVDSLDARQFHAITGQDKFNQVMAGIDAAFEAGFEKVK
                     VNTVLMRDVNHHQLDTFLNWIQHRPIQLRFIELMETGEGSELFRKHHISGQVLRDELL
                     RRGWIHQLRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSIGKLHLCLF
                     GEGGVNLRDLLEDDTQQQALEARISAALREKKQTHFLHQNNTGITQNLSYIGG"
     regulatory      complement(4059..4203)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            4468..5376
                     /gene="yvcK"
                     /locus_tag="OQQ19_002446"
     CDS             4468..5376
                     /gene="yvcK"
                     /locus_tag="OQQ19_002446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine diphosphate-N-acetylglucosamine-binding
                     protein YvcK"
                     /protein_id="HCS1804033.1"
                     /translation="MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDN
                     GGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLK
                     ALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTP
                     IQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMV
                     YIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVL
                     EASDIPYRHDRQLLHNALEKALQALG"
     gene            complement(5568..7589)
                     /gene="uvrB"
                     /locus_tag="OQQ19_002447"
     CDS             complement(5568..7589)
                     /gene="uvrB"
                     /locus_tag="OQQ19_002447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HCS1804034.1"
                     /translation="MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSG
                     KTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYV
                     PSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLH
                     LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD
                     EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE
                     NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL
                     LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV
                     SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL
                     VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE
                     GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG
                     ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP
                     MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS"
     gene            complement(8168..8845)
                     /gene="bioD"
                     /locus_tag="OQQ19_002448"
     CDS             complement(8168..8845)
                     /gene="bioD"
                     /locus_tag="OQQ19_002448"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706656.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HCS1804035.1"
                     /translation="MSKRYFVTGTDTEVGKTVASCALLQAAKAVGYRTAGYKPVASGS
                     EKTPEGLRNSDALALQHNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAG
                     LRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTA
                     QAIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGK
                     YINLALL"
     gene            complement(8838..9593)
                     /gene="bioC"
                     /locus_tag="OQQ19_002449"
     CDS             complement(8838..9593)
                     /gene="bioC"
                     /locus_tag="OQQ19_002449"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HCS1804036.1"
                     /translation="MATVNKQAIAAAFGRAAAHYEQHAELQRRSADVLLAMLPQRKYT
                     HVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATA
                     TFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERP
                     HANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRIL
                     TRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE"
     gene            complement(9580..10734)
                     /gene="bioF"
                     /locus_tag="OQQ19_002450"
     CDS             complement(9580..10734)
                     /gene="bioF"
                     /locus_tag="OQQ19_002450"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HCS1804037.1"
                     /translation="MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNF
                     SSNDYLGLSHHPQIIRAWQQGAEQFGVGSGGSGHVSGYSVAHQALEEELAEWLGYSRA
                     LLFISGFAANQAVIAAMMAKEDRIVADRLSHASLLEAASLSPSQLRRFVHNDVTHLAR
                     LLASPCPGQQLVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRG
                     SCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYNTSMPPAQAQAL
                     RASLAVIRRDEGDARREKLVSLIARFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQL
                     AEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG"
     gene            complement(10731..11771)
                     /gene="bioB"
                     /locus_tag="OQQ19_002451"
     CDS             complement(10731..11771)
                     /gene="bioB"
                     /locus_tag="OQQ19_002451"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HCS1804038.1"
                     /translation="MAHRPRWTLSQVAELFEKPLLDLLFEAQQVHRQHFDPRQVQVST
                     LLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAW
                     KNPNERDMPYLEQMVQGVKDLGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEF
                     YGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPES
                     VPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMC
                     FMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMT
                     PDTDEYYNAAAL"
     gene            11858..13147
                     /gene="bioA"
                     /locus_tag="OQQ19_002452"
     CDS             11858..13147
                     /gene="bioA"
                     /locus_tag="OQQ19_002452"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HCS1804039.1"
                     /translation="MTKDDLAFDQRHIWHPYTSMTSPLPVYPVVSAEGCELILSDGRR
                     LIDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQP
                     LECVFLADSGSVAVEVAMKMALQYWQAKGEVRQRFLTFRNGYHGDTFGAMSVCDPDNS
                     MHNLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAG
                     GMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEYAEIAPDILCLGKAL
                     TGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQ
                     QVAAIEVQLREQLAPARDAEMVADVRVLGAIGVVETTRPVNMAALQKFFVEQGVWIRP
                     FGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ"
     gene            13206..13682
                     /locus_tag="OQQ19_002453"
     CDS             13206..13682
                     /locus_tag="OQQ19_002453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase inhibitor"
                     /protein_id="HCS1804040.1"
                     /translation="MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTK
                     SFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTG
                     YDGAAPPKGETHRYIFTVHALDVEHIDVDEGASGAMVGFNVHFHSLASASITAMFS"
     gene            13834..15117
                     /locus_tag="OQQ19_002454"
     CDS             13834..15117
                     /locus_tag="OQQ19_002454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative acyl-CoA thioester hydrolase"
                     /protein_id="HCS1804041.1"
                     /translation="MNTFSVSRLALALAFSVTLTACSSTPPDQRPSDQTAPGTSSRPI
                     LSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVD
                     AAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPA
                     DWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENT
                     LGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVT
                     NSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFN
                     AFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVD
                     DNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK"
     gene            complement(15258..17495)
                     /locus_tag="OQQ19_002455"
     CDS             complement(15258..17495)
                     /locus_tag="OQQ19_002455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000477909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydratase"
                     /protein_id="HCS1804042.1"
                     /translation="MFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMD
                     KLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVF
                     GLSAAQRYGGIFVPPHIAIIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGE
                     LVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVG
                     PGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYY
                     DGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLL
                     DKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDL
                     AKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQM
                     SAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQ
                     PLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEF
                     TLSRRDPGYVGRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMV
                     YAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEV
                     GDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFN
                     KNRQM"
BASE COUNT         4092 a         4733 c         4442 g         4234 t
ORIGIN      
        1 gataatggca tatacaggaa ctaaacttgc aacgacaatc gccaccaaag agagtaaaaa
       61 cagatatatt acgcctgcga tgacggcatt tatcttgttg atatccttac ttaagccata
      121 catacaaact aataataacc ctatggcgac atacattgtt ggtgaatcat atttggttgc
      181 cgtaatttcg agatacttag ctccccaggc cagtcctgcg gttgccacca aacctaaagc
      241 ggtaatgagc catataccgt ttaatatcct ggtctcgtgc tgaaaatcta atttattgct
      301 gttttgtgag tatgattcca ttcttttagt tgtccttaga aaaaatatta atattcacca
      361 tcaataaatt taaacccacg catacaaaat acttttgtat ttatggatac ggaaaacgct
      421 tccgctcggc cataaggcgt attttatacc tggtacttgt taagtgtcgt ttttagtaag
      481 aaaagaaatc ccgacacatg gccgggatat tgatggtgaa aaagaattaa cggcggttgc
      541 caaaaattcg cagcaacatc aggaacaggt tgatgaagtc cagatacaag gttaacgcgc
      601 caagaatgga atatttgcgc aggttcgacg tgtcgcgggt atcaatctgc tcacccatat
      661 ttttcaattt ctgagtgtca tacgccgtca atccgacaaa gacaatcacg ccgatgtagg
      721 taactgccca catcaatgct tcgcttttca gccagaagtt gaccagcgat gccagcacaa
      781 tgccgattaa cgccataaac agcatattgc caaagccact taaatcgcgc ttcgtggtgt
      841 aaccgtacag gctcattgcg ccgaacatcc cggcagtaac gacgaaagta ctggcgatag
      901 aagcagcggt atagacaatg aatatactgg aaagcgtaag acccgtcagc gccgaataaa
      961 gcataaagag catcgtcgtt acacctgcgc tcagcttttg aatcatcgct gataacacaa
     1021 taaccaatgc taattgcgcg atgatcagac cgattaaaaa gacacggtta gtgaacaaca
     1081 gctccatcac ggccgcggaa ttagccgcat accaggcaac aaatgcggtc agcaacaagc
     1141 caacggtcat ccagccatag acttgcgcca tataagtttg caagccagcc cggggttgta
     1201 cgattgaatc agaacgtggg aatctgtcca tgacgatctc ctgaagatat aaggaatatc
     1261 ttaaggatac tgcaaaatga tgaggctgtg catcgacgca gcgtaaacgc atgtactgag
     1321 cggtgaaatt gccggacgca gcggtgcctt atccggctaa caaaaaacta ccagcgtttt
     1381 gccgcctgct gatcgctctc ccgagcttca acccagcggt cgccttccgg cgtggcttcg
     1441 cgcttccaga acggtgcgcg ggttttgaga taatccataa taaactgccc ggcttcaaac
     1501 gcactgctgc gatgcgcact ggtgacaccg gcaaaaacga tttcatcgcc cggccataat
     1561 tccccgatgc ggtgaatcac agtgacgcgc cccagcggcc agcggttacg cgcttcatca
     1621 acaatttctg ccagtgcttt ttcagtcatt cccggatagt gttcgagggt taatgctttg
     1681 acgctgtcgc ccaggttatg gttgcgcacc ttaccagtaa aggtgactac cgcaccgtct
     1741 tcgtcacgct ccgccagcca cgggtactct tctcctacgc tgaacggctg cggaccaaca
     1801 acaattttgg tttctgccat cttaacctcc ggttaccggc gggaagaaag ctacttcgtc
     1861 gccgtcagtc agcggatggt caaaactcac cagcgtctgg ttgacggcag ccagtaattt
     1921 gccatcttcc agcgccagcg cccagcgatc gctctgcgca gccatgtgct ggcgtaacgc
     1981 ttcaacagtt gggaaatccg cagccacttc ggttgcatct gttcccacca actcgcgcac
     2041 ctgcgcgaaa aaaagaactt taatcatccg cttccacctt aaagtcaccc gacttgccgc
     2101 cgctcttcgc cagcaaacgt accggaccaa tcaccatatc tttttgcacc gctttgcaca
     2161 tgtcataaat ggtcagcgcc gccacggagg ccgcggttaa tgcttccatt tcgacaccgg
     2221 ttttcccggt caggcggcat aaggtttcta tacgcacccg attgtgctcc ggctcggcct
     2281 gtaaattgac ttcaactttg ctgagcatca gcggatgaca gagcgggatc agatcccagg
     2341 tgcgttttgc cgcctgaata ccggtaatac gcgcagtggc aaatacgtcg cctttgtggt
     2401 ggcgaccatc aataatcatc gccagcgtct cgctgcgcat ggtgacaaag gcttccgccc
     2461 gcgcttcacg cacggtttcc gctttggcgg agacatccac catgtgcgct tcgccagcgg
     2521 cgttgatatg ggtcagttgc gacatactta tttcttcaaa tgtggatgga aattacacgg
     2581 acgcgtacgg gcatccagct gcggcgcgat gatattttcc catgcggtac ggcacgcttt
     2641 ggtcgaaccc ggcatggcga aaatcagcgt tttgttggcg acgcccgcaa ccgcacgaga
     2701 ttgcaacgtg gaagtgccaa tctcttcaaa cgacaacatc cggaacactt caccaaaacc
     2761 ttcaacttca cggtcgaaca acggcagcaa tgcttcggga gcctgatcac cttccgtcag
     2821 gccagtacca cccgtaatca ataccacttg tacatcgtcg ctggcgatcc acgcagatac
     2881 ctgagcgcga atagcgtagc ggttttcttt cacaatggct ttatcgacaa cgtgatggcc
     2941 cgcttcttgc gccgaatcgc gcagatagtg accggaggta tcgtcttctt caccgcgacg
     3001 attagaaacc gtaagaatag caatacgggt cgggataaat tcagtgctta cctgactcat
     3061 ctgatctctc cttttgacgt tttagccgcc aatgtacgat aagttttgcg taataccggt
     3121 gttgttttga tgcaggaaat gggtctgttt cttctcccgc agcgccgctg aaatacgcgc
     3181 ttccagcgcc tgttgctggg tatcgtcttc cagcagatcg cgcaggttaa cgccgccttc
     3241 accaaacagg cagagatgga gtttaccaat ggaggaaacg cgcaggcggt tgcaagtggc
     3301 gcagaagtct ttttcatacg gcatgataag gccaatctct ccggcgtaat ctggatggca
     3361 aaagacttgc gcgggaccgt cgctgcgttg acgtaattgg tggatccagc cgcgacgcag
     3421 tagctcgtca cgcagaacct gaccagagat gtgatgctta cggaagagct cgctgccctc
     3481 gcccgtttcc atcagttcga tgaaacgcag ctggataggg cgatgctgga tccagttcag
     3541 aaaggtgtcg agctggtgat gattaacatc acgcatcagc acggtattga ctttgacctt
     3601 ctcaaaaccg gcctcaaatg cagcatcaat ccctgccatg acctggttga atttatcctg
     3661 cccggtaata gcgtgaaact ggcgggcgtc cagactgtcg acactgacgt taatgccagt
     3721 aagtcccgca tcgcgccagt tcgccacatc gcgttccaga cggtaaccat tggtggtgac
     3781 cgcaatctgg cggatagcgt cgttttcccg cacagcggcg atgatatcgg taaagtcgcg
     3841 gcgtaaagac ggctcacctc ctgtcaggcg cactttttcg gtgcccagac tggcgaaggc
     3901 gcgcgtaacc cggcgaattt catcgacggt aagaaagcct ttattggtga cgccgctcgg
     3961 tttgtagcca tccggcaggc agtaggtgca acgaaagtta cacacatcgg taatcgacag
     4021 gcgcaagtag taaaacttac gcgcaaatgc atcagtcagt tgtgaagcca tgtacacctt
     4081 tccagatacg ggaggcgaag tcatttcttc cttcgccctg gtggcaatct ttacgagcat
     4141 tgtcacggcc aaagcaccgt atcagttgac ccaggtgcag aggctagagt gtttagtggt
     4201 taagccgata ctagcgtgta aatgagattt ttaccatcca cactttcgct atgcaatcat
     4261 gtatatagcg tcatgatcgt gctatttcgc tacagaataa gggaaaatgg cagttttact
     4321 ttgatataca tcatcaggga ggcatagcgt gcatcgtcct ttagaggtag aagaaaatag
     4381 tttgtatcct caatattggc aggttaattg ctgtttcccc gcaatttgcg ctactgtagc
     4441 gcggataatc tgactccagg aaactatatg cgcaatcgta cgctggctga tcttgatcgt
     4501 gtcgttgctc tcggcggagg gcatggactg ggacgcgttc tctcatcact ttcgtctttg
     4561 ggttctcgtt taacgggtat cgtcaccacc acggataatg gtggctcgac ggggcgtatt
     4621 cgccgttcag aaggcggcat tgcctggggc gatatgcgca actgcctcaa ccaactgata
     4681 acggaaccga gcgtcgcctc cgcgatgttt gaataccgtt ttggcggcaa tggcgaactt
     4741 tccgggcaca accttggaaa cttgatgtta aaggcgctgg atcaccttag cgtgcggcct
     4801 ctggaagcca tcaatttaat tcgtaatctg ctgaaagtgg atacgcattt gattccaatg
     4861 tcagagcatc ccgtcgatct gatggcgatt gacgatcagg ggcatgaagt ttacggcgag
     4921 gtcaatatcg accagttaac tacgccgatt caagagttat tattaacgcc gaatgtaccc
     4981 gcaacgcgtg aggcagttca cgctatcaat gaagcggatc tcatcattat tgggcctggc
     5041 agtttttata ccagcctgat gccaattctg ctgctgaagg aaatcgccca ggcattacgc
     5101 cgcacgccag cgccgatggt ttatatcggc aatctggggc gtgagttgag tttacctgcg
     5161 gctaatttga agctggaaag caagctggca attatggagc agtatgttgg taaaaaagtc
     5221 attgatgcgg tcatcgtcgg gccaaaagtg gatgtctcgg cggtgaaaga gcggattgtg
     5281 atccaggagg tactggaggc cagcgatatt ccgtatcgtc atgaccgcca gttgttacat
     5341 aacgcgctgg aaaaggcgtt acaggcttta ggttaacgga aatccgaagg aaaattccgg
     5401 cttcctattg aagacaaagt gcgcgttgtt tatgccggat gcggcgtgaa cgccttatcc
     5461 ggcctacaaa ccgcgcaaat tcaatatatt gcggagaaaa tgtaggcctg ataagcgtag
     5521 cgcatcaggc tgttttccgt ttgtcatcag tcttcttcgc tatcctgtta cgatgcggca
     5581 ataaacaact cacgcaactg atgcaactgg tcacgaattt gtgccgcttc ttcgaactcc
     5641 agattctgcg cgtgttgcat catcagccct tccagttcat ggattttctg ctgcaacgct
     5701 ttcggcgaca tatccatcgg cacattatcc ggctcaacaa tcgggcgcga ttttcctctg
     5761 cccttcgctt tggttttggc aatgttctgc cccagcgcca ggatatcgac cactttcttg
     5821 ttcaagcctt gcggcgtaat gccgtgttcc tcgttgtact tctgctgttt ctcacggcga
     5881 cgttcggttt cgccaatcgc tttcgccatt gatggggtga tcttatcgcc gtagagaatc
     5941 gctttaccgt taacgttacg tgccgcacga ccaatggtct ggatcaacga acgttcggaa
     6001 cgcaggaagc cttctttgtc agcgtcgagg atcgccacca gcgacacttc cggcatatcc
     6061 agaccttcgc gcagtaagtt gatccctacc agcacgtcga actcacccag acgcaagtcg
     6121 cggataatct ccatacgttc gacggtgtcg atatctgagt gaagataacg cacgcgctcg
     6181 ccatgttctt cgagatattc ggtaagatct tccgccatcc gcttggtcag tgtggtgacc
     6241 agtacgcgtt cgttaattgc cgctcgctga cgaatctccg aaagaagatc atcaacctgt
     6301 gtcgccaccg gccgcacttc gataatcggg tcaagcaatc cggttggacg caccacctga
     6361 tccaccacat cgccgccgga tttttccagc tcgtaattac ccggcgtcgc cgaaacatag
     6421 atggtttgcg gcgctaatgc ttcgaactct tcaaacttaa gcggacggtt atccagcgct
     6481 gatggcaggc ggaagccgta ctccaccagt gtctctttac gcgcccggtc accgcgatac
     6541 atgccgccaa tttgtggaat ggtgacgtga gattcatcga cgaccagcag cccatcggca
     6601 ggcaggtaat caaacagcgt cggcggtggc tcacccggtc cacgaccgga gaggaagcgc
     6661 gagtagtttt caatccccga acagtagccc agctcgttca tcatctccag atcaaactgg
     6721 gtacgctggg tcagccgctg ctcttccagc agtttgttgt tttccaacag cactttgcgt
     6781 ctggcggcca gttcttcttt gatctcctcc atcgcctgta cgatgcgctc gcgcggtgtg
     6841 acgtagtgcg ttttcgggta gatggtaaaa cgtggaatag tggaaacaat ctgcccggtc
     6901 agcgggtcaa ataacgacaa tcgttccact tcctcgtcaa acagttccac gcgaagtgca
     6961 atgtcatccg attctgccgg gaagatatca atcacctcgc cacgaacgcg gaaagtacca
     7021 cgctggaatg cttgatcatt acgagcgtat tgcagctccg ccagtcggcg cagaatcgcg
     7081 cgctgatcga taatcatacc gaccgtgaga tggagcatca tcttgagata taaatcagga
     7141 tcgcccagac cataaatcgc ggaaacagag gccactacaa ccacatcacg ccgctccagc
     7201 atcgctttgg tggcggataa acgcatctgc tcaatatgtt cgttaaccga ggcatctttc
     7261 tcaatgaaag tgtcggaact cggtacatag gcttccggct gatagtagtc gtagtaggag
     7321 acgaaatact ccaccgcgtt ttccgggaag aactctttca tttcgccata cagctgggcc
     7381 gccagcgttt tgttgggcgc aagtaccatg gttgggcgct gaaggtcagc aatgacattg
     7441 gcaatggtga aggttttccc tgagccagtc acgccaagta acgtctggtg cgccaggcca
     7501 tcttccagcc cctcttcgag acgtcgaatc gcctctggct gatcgccaga aggtttaaaa
     7561 gcggaattca gtttgaacgg tttactcatg agtcgctacc tgaaggagtt gggcgggcag
     7621 gtatgtaatt ttactcgtcg tacttaatta tgccaacaaa ttatactgga taaaaaaaca
     7681 gttcatcacc ataatatttc tgatacagcg taaactccgc tgtcaatcat gagcaaaatt
     7741 tactctgtgg cgagataaaa ctccggcctt accgggttat ccccaaagca acggcttttt
     7801 taacatttgt caagatgagt gatgacagtt ttatggcaag agatgcctgt tcagtgactg
     7861 ccattgcatt tatctaacca gttaaaaaat aaaagatatt tctttgagcc gtctttaacg
     7921 ccaattcgcg tgcaagccgc gtattctctc gcttgcctcg tgttttctaa ctctaataca
     7981 catggttatc cacaggaata gtggataact gtctccagcc cctatccccc gccgcctggg
     8041 caattcccac attcgccgca tgaggcggaa gtaaaatttt tttcgtgatt attttagaat
     8101 ttaattggtt aaattgcagt caatcgaaga cgcgatctcg ctcgcaattt aaccaaatac
     8161 agaatggcta caacaaggca aggtttatgt actttccggt tgccgcattt tctggatttt
     8221 ctgcaagcca ggggatctct cccagcagcg gcgcgggaat catgcgggtg agcgtggtca
     8281 tatattcagc gtgacgtttt cccggaggcg taacatcgtt cgccacccaa cccgccagag
     8341 tcagtccggc gtgttgtatt gcctgcgcag tcaacatcgc gtgattaata cagccgagtt
     8401 tcacaccaac taccagtatc accggcagtt gttcctgtgt tacccaatct gcaaaagtga
     8461 aagtgtcaga aagcggcgta aaccagccgc cagcaccttc cactaacacc cagtcagcct
     8521 gttgttcaag cgcgcgtaat ccggcgctca ttaccaatga ttctatcggc ctgccctctt
     8581 gcgcgctgat gatgtgcggc gaagtgggtt ctgcgaaggt gtaaggattt actgttgcgt
     8641 aatccagctg caggctgctg ttgtgctgta acgccagcgc gtcactatta cgtaagcctt
     8701 ccggggtctt ttcgctgcca gaggcgaccg gtttataacc tgccgtccga taacctactg
     8761 ccttcgcggc ttgtaaaagt gcacaactgg cgacggtttt ccccacttcg gtatccgttc
     8821 cggtgacaaa ataacgttta ctcacgagca atcactccca aaaaaagatg atacgtcaga
     8881 ggatatcgcc cctgttgttg cggccaggcc agttgcaatc gctgcaattg cgaacgcgtt
     8941 aatattcgcg ggtcgcgccc ttcatgaaga tgcgtagcac cgatgccttt cagcgaacgc
     9001 atggcactga gcgcatcatc aaaccatagt gtgatgggct gaatatgatg ttgataatgc
     9061 acgccgttca gcgactgttc gatttcatct ggcggtaaaa agcgattagc atgcggacgc
     9121 tcgtccaccg cctgccacgc ctgatgcagt tcgggtaacg atccctgcac cagcgtggta
     9181 aacgccacca cgcctccggg gcgcaccacc cgatacagct cgcggagtgc cgtggataaa
     9241 ttaccgcacc actgcaccgc gagattgctc catgcaagat cgaacgtcgc agtcgctaac
     9301 ggcagggatt cgatatctcc cgccagataa tggtctgcag catctttctg gcgggcttgc
     9361 acaagcattg gcggtgagag atctaacgcc gtcacctgtg cgtgacgctc tcgccagtgg
     9421 cggctcatcc agcctggccc acaccccgcg tccagtacgt gggtgtattt acgctgtggg
     9481 agcattgcca gtaagacgtc agcactccgg cgctgtaact ctgcgtgttg ctcatagtgc
     9541 gcggctgccc gaccaaatgc cgctgcaatg gcttgtttat taaccgttgc catgcagcac
     9601 ctccagcaga cggtcgatat cctgcatttc atgcgctgcg gttagcgtta agcgcagtcg
     9661 cgcagtacca gcgggtacgg ttggcgggcg aatcgccgtg acccagcagc cttgctggcg
     9721 cagtttttct gccagttgta acgcacggct gttatcaccg acgatcaatg gctggatggc
     9781 gctgcatgaa tcagcaagcg taaacggcaa atcctgtact ccggcacgaa aacgcgcaat
     9841 gagtgacacc agtttttcgc gccgtgcatc cccctcatca cggcgaatga ccgccagcga
     9901 cgcacgtaat gcctgcgcct gagcgggcgg catactggtg ttgtagataa ggtggcgggc
     9961 gaattgcagc agataatccg ccaccgtact ggagcaaagc accgctgccc cgctgacgcc
    10021 aaatcctttg ccaaaagtca ccaccagcaa ttctggtttt accttttgca gccagcagct
    10081 gccgcgcccc tgctccccga taacgcccgt gccgtgggca tcatcgacca tcaaccagcc
    10141 attgtgctgt tgcgttacct gctggatttc cgccagtggc gcactatcgc cgtccatgct
    10201 gaacacgcct tctgtcacca ccagttgctg ccccggacag ggggaagcaa gcagtcgcgc
    10261 cagatgagtg acatcgttat gaacaaaacg gcgaagctgc gacgggctta aactggcagc
    10321 ctccagcaat gaggcatggc taagccggtc agcgacaatg cggtcctctt ttgccatcat
    10381 cgcggcaatg accgcctgat tagcggcaaa accagagata aatagcagtg cccgcgaata
    10441 gcccagccac tcggccagtt cttcttccag cgcctgatgc gcaacgctat aaccgctgac
    10501 gtgaccggaa ccgccgctac cgacgccaaa ttgctccgca ccctgctgcc aggcacggat
    10561 aatttgcgga tgatggctta aacctaaata atcgttactg gaaaagttca gatactggcg
    10621 atcatccgcc accagccagc gtccggctcc ttgcgccact ggataacggc gacgcagggc
    10681 atcggcagca cgccgcgcat cgagcgccgc gttgattttc tcctgccagc tcatagtgct
    10741 gccgcgttgt aatattcgtc agtatccggg gtcatcagcg cctgttcaag acgttgctgt
    10801 tgttcgttat cccctgccag cacggcagtt tgctgcggat ttagccccag tttgcggaac
    10861 agttgcaggt ctttatcttc ttccggattc ggcgtggtca gcagtttgca accgtagaaa
    10921 atcgagtttg cgcctgccat aaagcacatc gcctgagtct gttcgttcat ctgctcgcgt
    10981 ccggcagaaa ggcgcacgta agaggtcggc atcatgatcc gcgcgaccgc aatggtgcga
    11041 ataaaatcaa aggcatcaac gtcatcgtta tcggcaagcg gcgtgccttt caccttcacc
    11101 agcatgttga ttggcacgct ttccggcggc gtcggcaggt ttgccagttg cagcaataat
    11161 ccggcgcgat cttttaccgt ttcgcctaag cccacaatgc cgccagaaca gactttgatc
    11221 ccggcatcgc gcactttttc cagcgtatcg aggcgttcct gataagtgcg ggtggtgatg
    11281 atattgccgt aaaactccgg cgaggtgtcg aggttgtggt tgtagtaatc cagcccggcg
    11341 ttcgcgaggc gctgcgcctg agattcactc aacgtgccca gcgtcataca cgcctccagc
    11401 cctaaatctt ttaccccctg caccatctgc tccaggtacg gcatatcgcg ttcgttggga
    11461 ttcttccacg ccgcgcccat gcaaaaacgc gtcgatcccg ccgctttcgc tttgcgcgcc
    11521 gactccagca cctgttcaac ttccatcaac cgctcggctt ccagaccggt tttatagcgc
    11581 gagctttgcg ggcaatattt gcaatcttcc gggcaagcac cggttttaat cgacagcaac
    11641 gtgctgacct gcacctgacg aggatcgaaa tgctggcgat gcacctgctg cgcttcaaac
    11701 agcagatcca gcaacggttt ttcaaataat tctgcgactt gcgacaatgt ccagcgtggg
    11761 cggtgagcca tggggcttct ccaaaacgtg ttttttgttg ttaattcggt gtagacttgt
    11821 aaacctaaat cttttcaatt tggtttacaa gtcgattatg acaaaggacg atcttgcctt
    11881 tgaccaacgc catatctggc acccatacac atccatgacc tccccgctgc cggtttatcc
    11941 ggtggtgagc gccgaaggtt gcgagctgat tttgtctgac ggcagacgcc tgattgacgg
    12001 tatgtcgtcc tggtgggcgg cgatccacgg ctacaatcac ccgcagctta atgcggcgat
    12061 gaagtcgcaa attgatgcca tgtcgcatgt gatgtttggc ggtatcaccc atgcgccagc
    12121 cattgagctg tgccgcaaac tggtggcgat gacgccgcaa ccactggaat gcgtttttct
    12181 cgcggactcc ggttccgtag cggtggaagt ggcgatgaaa atggcgttgc agtactggca
    12241 agccaaaggc gaagtgcgcc agcgttttct gaccttccgc aatggttatc atggcgatac
    12301 ctttggcgcg atgtcggtgt gcgatccgga caactcaatg cacaacctgt ggaaaggcta
    12361 tctgccagaa aacctgtttg ctcccgcccc gcaaagccgc atggatggtg aatgggatga
    12421 acgcgatatg gttggctttg cccgcctgat ggcggcgcat cgtcatgaaa tcgcggcggt
    12481 gatcattgaa ccgattgtcc agggcgcagg cgggatgcgc atgtaccatc cggaatggtt
    12541 aaaacgaatc cgcaaaatgt gcgatcgcga aggtatcttg ctgattgccg acgagatcgc
    12601 caccggattt ggtcgtaccg gcaaactgtt tgcctgtgaa tatgcagaaa tcgcgccgga
    12661 cattttgtgc ctcggtaaag ccttaaccgg cggcacaatg accctttccg ccacactcac
    12721 cacgcgcgag gttgcagaaa ccatcagtaa cggcgaagcc ggctgcttta tgcacgggcc
    12781 aacttttatg ggcaatccgc tggcctgcgc ggctgcaaac gccagcctgg cgattctcga
    12841 atctggcgac tggcagcaac aggtggcggc tattgaagta cagctgcgcg agcaacttgc
    12901 ccccgcccgt gatgccgaaa tggttgccga tgtgcgcgtg ctgggggcaa tcggcgtagt
    12961 cgaaacaact cgtccggtga atatggcggc gctgcaaaaa ttctttgtcg aacagggggt
    13021 atggatccgg ccttttggca aactgattta cctgatgccg ccctatatta ttctcccgca
    13081 acagttgcag cgtctgaccg cagcggttaa ccgtgcggtg caggatgaaa catttttttg
    13141 ccaataacgg gaagtcagcg tgtgggtttc tggctacact ttctgcaaac tagaaaggag
    13201 ggttcatgaa actcatcagt aatgatctgc gcgatggcga taagctgccg catcgtcatg
    13261 tctttaacgg catgggttac gatggcgata atatttcacc gcatctggcg tgggatgatg
    13321 ttcctgcggg aacgaaaagt tttgttgtca cctgctacga cccggatgcg ccaaccggct
    13381 ccggctggtg gcactgggta gttgttaatt tacccgctga tacccgcgta ttaccgcaag
    13441 ggtttggctc tggtctggta gcaatgccag acggcgtttt gcagacgcgt accgattttg
    13501 gtaaaaccgg atacgatggc gcagcgccgc cgaaaggcga aacccatcgc tacattttta
    13561 ccgttcacgc gctggatgta gagcatattg atgtcgatga aggagccagc ggcgcgatgg
    13621 tcgggtttaa cgttcatttc cactctctgg caagcgcatc gattaccgcg atgtttagtt
    13681 aatcactctg ccagatggcg caatgctatc tggtatcact taaaggtatt aaaaacaact
    13741 ttttgtcttt ttaccttccc gtttcgctca agttagtata aaaaagcagg cttcaacgga
    13801 ttcatttttc tatttcatag cccggagcaa cctgtgaaca cattttcagt ttcccgtctg
    13861 gcgctggcat tggcttttag cgtgacgctg accgcctgta gctcaacacc acccgatcaa
    13921 cgtccttctg atcaaactgc gcctggtacc tcttctcgcc cgattctgtc ggcaaaagaa
    13981 gcgcagaatt tcgatgctca acactatttt gcatccctga caccaggtgc tgcagcgtgg
    14041 aatccttccc cgattaccct gcctgcgcaa cctgactttg ttgtcggccc ggcgggcact
    14101 caaggtgtaa cgcataccac gattcaggcg gcggtagatg cggcaattat caagcgtacc
    14161 aacaagcgcc agtatattgc cgtgatgcct ggtgagtatc agggaacggt gtatgtccct
    14221 gctgctccgg gtggaattac tctgtacggt acaggtgaaa aaccgattga tgtgaagatt
    14281 gggctttccc ttgatggggg catgagccct gccgactggc gtcacgacgt caacccgcgc
    14341 ggcaaatata tgccaggtaa accagcgtgg tatatgtacg atagctgcca gagcaaacgc
    14401 agcgacagta tcggtgttct ctgctctgcg gtcttctggt cacaaaacaa tggcctgcaa
    14461 ctgcaaaacc tgaccatcga aaacacgctg ggcgatagcg tagatgcagg taaccatccg
    14521 gcggtggcac tgcgtactga tggtgaccag gtacagatta acaacgttaa cattctcggt
    14581 cgtcagaaca ccttctttgt caccaacagc ggtgtgcaga accgtctgga aacgaatcgt
    14641 cagccgcgta cgctggtgac caacagctac attgaagggg atgtggatat cgtttctggt
    14701 cgcggcgcag tggtgttcga taacaccgaa ttccgcgtgg tgaactcacg tactcagcaa
    14761 gaagcgtatg tgtttgcacc ggctacgctg tccaacattt actacggttt cctcgccgta
    14821 aacagccgtt tcaatgcttt cggtgatggt gtggcgcaac tgggccgctc gctggatgtt
    14881 gatgccaata ccaacggtca ggtggtgatc cgtgatagcg ccatcaacga aggttttaac
    14941 acggctaaac cgtgggccga tgcggtgatc tctaatcgtc cgtttgcggg taataccggc
    15001 agcgtagatg ataacgacga aatacagcgc aatctgaatg acactaacta caaccgcatg
    15061 tgggaataca ataaccgcgg cgtgggtagt aaagtggttg cagaggcgaa gaagtaagag
    15121 caattaacta tttgccggat gcggcgtaaa cgccttatcc ggcctacggt tcgatgcgat
    15181 ttgtaggtcg gataagatgc gcaagcatcg catccgacaa taagtgccga atgcgaccta
    15241 cattcacatg gcgcttttta catctgacgg tttttattga agttaatcaa actacccgcc
    15301 ttgataatct cgcgctcttc agcagtcaga ctttccatat agagcgtaat ttccgttacc
    15361 ggcgcatctt catggatcac ataaccttta aacgtcgtac ccggattatc cagcgccgct
    15421 ttaatgccag ggatgtaaat gtaatccccc acttcaaagg ttggcacttc cgccatctgc
    15481 agcggtaaca tcccccagtt gatgacgtta gaacggtagc gtttagtcgc gtactcttcg
    15541 gcaatattcg ccagaccgcc aatcacacgc tggcagctcg ccgcctgttc acgcgcagaa
    15601 ccatcgcctg gtttcaccgc atataccatg ctgccaattt cagtttgcag cggatcaata
    15661 tgctcctgac cagcaatctg cttaatgcgc gcaaacacct ctgtcagctc gctgacattc
    15721 cccgccagac gctgattttc cagctcagca gtcgctttac ttctgccaac ataaccggga
    15781 tcgcggcgtg acagggtaaa ctccgccaga ccaatcggat ttgaacgata agaagaggtt
    15841 tcaccggaag gaatcagttc gtcggtggtg gtcacttcgt cgaggatctt cgagcacact
    15901 ttcaggacga tattgtcagt cagcgcaccc aattccggcc agtctttaat gttcggtccg
    15961 taaatcagcg gttgctgagt tgcccctttc acaaagccct gataaacacg gtttttatac
    16021 ggcgttacat cgaaggcgta ctccggcacg ttgtcccagc aatcaagttc gctggcagag
    16081 gttaaatagc caccgtttgc cgcagtcgca gcgatagaac gagcgtccat caacgccacc
    16141 gctgacatct gcccattagc tggcttagag ccttcgcggt tcgggaagtt acgcgtggtg
    16201 tggcgaatac ttaatccgtt gttgattggc gtatcgcccg cgccaaagca tgggccgcag
    16261 aacgcggttc tgatgattgc gcctgcgcca atcaaatctg ctaccacacc ttttttggct
    16321 aaatccataa acaccggctg tgatgacggg taaaccgcca gcgagaaggt gtcattgcca
    16381 caggattgac cgcgcagtgc attcgccgcc gcgatgacgt tttcgtagtt accgccagaa
    16441 cagcccgcga taatcccctg ctgcactttc aggcgaccat tttccacttt atccagcagc
    16501 gagagtttgg ctttaccgtg cgccacgcgt tcggactcaa tttcaatctc acgcagaatg
    16561 tcggtcaggt tctggttcag tgtgtcgatt tcatacacgt tgctcgggtg gaacggcagc
    16621 gcaatcattg gtttgatggc gcttaaatca acgctgatgc agccatcgta gtacgccatc
    16681 ggttgagggt taagctggca gtaatcctgg ccgcgaccgt gcagcgccag ccagttatgc
    16741 acttcttcat cagtttgcca gacggagctt aaacaggtgg tttccgtggt catcacgtca
    16801 acgctgttac ggaaatcggt agagagcgcg ctaacgcccg gtccaacgaa ctccatgact
    16861 ttgtttttga cgtaaccgtt tttgaacacc gcgccaatga tagccagcgc cacatcctgt
    16921 ggccccacat acggcgcagg ttttccggtc agatgcaccg caaccacgcc cggatagtcg
    16981 atatcccagg tgtcattaag cagctgtttt accaactcac cgccgccctc accgactgcc
    17041 attgtcccta atgcaccgta acgggtgtgg ctgtctgacc cgaggatcat tttgcccccg
    17101 cctgccatca tctcacgcat atattgatgg atgatcgcaa tatgcggagg cacaaaaata
    17161 ccgccataac gctgagctgc cgataaacca aaaacatggt catcaccgtt aatggtgccg
    17221 ccgacggcgc agagtgagtt atggcagttg gtcagcacat acggcagcgg gaaacgttcc
    17281 attccggacg ctttagcggt ctgtacaata ccaacaaagg taatatcgtg agaggctaat
    17341 gaatcaaact taattttaag tttatccata tttccggacg tattatgaga agagagaata
    17401 gaccaggcaa tagtgccttt tttggcttct tcttttttaa tttcgccggt gaaatgttct
    17461 tcggcaatta tttcgttatt actggcgaga aacacgcctt t
//
LOCUS       DAJVSY010000082        17501 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.082, whole genome shotgun sequence.
ACCESSION   DAJVSY010000082 DAJVSY010000000
VERSION     DAJVSY010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17501
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.082"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..744
                     /locus_tag="OQQ19_002456"
     CDS             <1..744
                     /locus_tag="OQQ19_002456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2686 family protein"
                     /protein_id="HCS1804043.1"
                     /translation="SSTDKPAKLKFHQYARATLLSNRGRDHNCDGRRTVEIHKLDLSD
                     WQAFNKLATKCNAYDGVTMNGDNSFGWNHEATLDNIHAQKYNKAYAGARLTAELKYLL
                     QDVESFEPNSKYTIHEVVLGPGYGTPDYTGQTIGYVVTLPAQMPNCWSSELPTIDLYI
                     DQLHTVTGVSNALGFIIAALLNAYSDLPHDLKIGLRSLSNSAAIYSGLGFERVPQDRD
                     IRSDRMHLTPANHPDLWTQENGEWIYLRN"
     gene            complement(815..1264)
                     /gene="rplI"
                     /locus_tag="OQQ19_002457"
     CDS             complement(815..1264)
                     /gene="rplI"
                     /locus_tag="OQQ19_002457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HCS1804044.1"
                     /translation="MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNI
                     EFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADA
                     VTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE"
     gene            complement(1306..1533)
                     /gene="rpsR"
                     /locus_tag="OQQ19_002458"
     CDS             complement(1306..1533)
                     /gene="rpsR"
                     /locus_tag="OQQ19_002458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012986941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HCS1804045.1"
                     /translation="MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRI
                     TGTRAKYQRQLARAIKRARYLSLLPYTDRHQ"
     gene            complement(1538..1852)
                     /gene="priB"
                     /locus_tag="OQQ19_002459"
     CDS             complement(1538..1852)
                     /gene="priB"
                     /locus_tag="OQQ19_002459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HCS1804046.1"
                     /translation="MTNRLVLSGTVCRTPLRKVSPSGIPHCQFVLEHHSVQEEAGFHR
                     QAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS
                     GD"
     gene            complement(1859..2254)
                     /gene="rpsF"
                     /locus_tag="OQQ19_002460"
     CDS             complement(1859..2254)
                     /gene="rpsF"
                     /locus_tag="OQQ19_002460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HCS1804047.1"
                     /translation="MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGR
                     RQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPM
                     VKAKDERRERRDDFANETADDAEAGDSEE"
     gene            2581..2856
                     /locus_tag="OQQ19_002461"
     CDS             2581..2856
                     /locus_tag="OQQ19_002461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS1804048.1"
                     /translation="MFSRVLALLAVLLLSANTWAAIEINNHQARNMDDVQSLGVIYIN
                     HNFATESEARQALNEETDAQGATYYHVILMREPGSNGNMHASADIYR"
     gene            complement(2931..3482)
                     /locus_tag="OQQ19_002462"
     CDS             complement(2931..3482)
                     /locus_tag="OQQ19_002462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000996729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
                     /protein_id="HCS1804049.1"
                     /translation="MAINGLFVRTDPQRRRYGVALLVGVLSGIISAFVKWGAEVPLPP
                     RTFSGGRDEFNPPYIFLRDYLGIDPTQTVYTFSEHIINPVMVTHIIFSLVFAIGYCIV
                     AEIFPKVKLWQGILAGLIVTVAVHGIFCPALNLTPPLTQLPFDEYASEILGHIFWFWI
                     IEIMRRDLRNRITHEPDPEVAIR"
     gene            complement(3579..4265)
                     /gene="ulaF"
                     /locus_tag="OQQ19_002463"
     CDS             complement(3579..4265)
                     /gene="ulaF"
                     /locus_tag="OQQ19_002463"
                     /EC_number="5.1.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase UlaF"
                     /protein_id="HCS1804050.1"
                     /translation="MQKLKQQVFEANMDLPRYGLVTFTWGNVSAIDRERGLVVIKPSG
                     VAYETMKADDMVVVDMSGKVVEGKYRPSSDTATHLELYRRYPSLGGIVHTHSTHATAW
                     AQAGLAIPALGTTHADYFFGDIPCTRGLSEEEVQGEYELNTGKVIIETLGDAEPLHTP
                     GIVVYQHGPFAWGKDAHDAVHNAVVMEEVAKMAWIARSINPQLNHIDSFLMNKHFMRK
                     HGPNAYYGQK"
     gene            complement(4265..5119)
                     /gene="ulaE"
                     /locus_tag="OQQ19_002464"
     CDS             complement(4265..5119)
                     /gene="ulaE"
                     /locus_tag="OQQ19_002464"
                     /EC_number="5.1.3.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase UlaE"
                     /protein_id="HCS1804051.1"
                     /translation="MLSKQIPLGIYEKALPAGECWLERLRLAKTLGFDFVEMSVDETD
                     ERLSRLDWSREQRLALVNAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKA
                     IQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYP
                     LMNSISKALGYAHYLNNPWFQLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPG
                     VFKNVPFGEGVVDFERCFETLKQSGYCGPYLIEMWSETAEDPAAEVVKARDWVKARMA
                     KAGMVEAA"
     gene            complement(5129..5779)
                     /gene="ulaD"
                     /locus_tag="OQQ19_002465"
     CDS             complement(5129..5779)
                     /gene="ulaD"
                     /locus_tag="OQQ19_002465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HCS1804052.1"
                     /translation="MSLPMLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGV
                     RAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVA
                     KEFNGDVQIELTGYWTWEQAQQWRDAGIQQVVYHRSRDAQAAGVAWGEADITAIKRLS
                     DMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAELWG"
     gene            complement(5793..6257)
                     /gene="ulaC"
                     /locus_tag="OQQ19_002466"
     CDS             complement(5793..6257)
                     /gene="ulaC"
                     /locus_tag="OQQ19_002466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIA"
                     /protein_id="HCS1804053.1"
                     /translation="MKLRDSLAENKSIRLQAEAETWQDAVKIGVDLLVAADVVEPRYY
                     QAILDAVEQHGPYFVLAPGLAMPHGRPEEGVKKTGFALVTLKKPLEFNHEDNDPVDIL
                     ITMAAVDANTHQEVGIMQIVNLFEDEENFDRLRACRTEQEVLDLIDRTNAAA"
     gene            complement(6267..6572)
                     /gene="ulaB"
                     /locus_tag="OQQ19_002467"
     CDS             complement(6267..6572)
                     /gene="ulaB"
                     /locus_tag="OQQ19_002467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710059.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIB"
                     /protein_id="HCS1804054.1"
                     /translation="MTVRILAVCGNGQGSSMIMKMKVDQFLTQSNIDHTVNSCAVGEY
                     KSELSGADIIIASTHIAGEITVTGNKYVVGVRNMLSPADFGPKLLEVIKAHFPQDVK"
     gene            complement(6588..8036)
                     /gene="ulaA"
                     /locus_tag="OQQ19_002468"
     CDS             complement(6588..8036)
                     /gene="ulaA"
                     /locus_tag="OQQ19_002468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008786013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HCS1804055.1"
                     /translation="MSAQHSGCAEYPVTSSSGDRLYNIFTVFFNQVMTNAPLLLGIVT
                     CLGYILLRKSVSVIIKGTIKTIIGFMLLQAGSGILTSTFKPVVAKMSEVYGINGAISD
                     TYASMMATIDRMGDAYSWVGYAVLLALALNICYVLLRRITGIRTIMLTGHIMFQQAGL
                     IAVTLFIFGYSMWTTIICTAILVSLYWGITSNMMYKPTQEVTDGCGFSIGHQQQFASW
                     IAYKVAPFLGKKEESVEDLKLPGWLNIFHDNIVSTAIVMTIFFGAILLSFGIDTVQAM
                     AGKVNWTVYILQTGFSFAVAIFIITQGVRMFVAELSEAFNGISQRLIPGAVLAIDCAA
                     IYSFAPNAVVWGFMWGTIGQLIAVGILVACGSSILIIPGFIPMFFSNATIGVFANHFG
                     GWRAALKICLVMGMIEIFGCVWAVKLTGMSAWMGMADWSILAPPMMQGFFSIGIAFMA
                     VIIVIALAYMFFAGRALRAEEDAEKQLAEQSA"
     gene            8340..9404
                     /gene="ulaG"
                     /locus_tag="OQQ19_002469"
     CDS             8340..9404
                     /gene="ulaG"
                     /locus_tag="OQQ19_002469"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003856017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HCS1804056.1"
                     /translation="MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLG
                     CTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTPPFVL
                     DPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKER
                     CIVVKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPG
                     GSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKV
                     VIPFHHDIWSNFQAAPQEIRVQWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHY
                     PRGFDDCFTIEPDLPFKSFL"
     gene            9512..10267
                     /gene="ulaR"
                     /locus_tag="OQQ19_002470"
     CDS             9512..10267
                     /gene="ulaR"
                     /locus_tag="OQQ19_002470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator UlaR"
                     /protein_id="HCS1804057.1"
                     /translation="MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLD
                     ESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCG
                     STAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSEN
                     SLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLF
                     SRADQIDMLITGKNANPEILQQLEAQGVSILRV"
     gene            complement(10264..11013)
                     /gene="yjfP"
                     /locus_tag="OQQ19_002471"
     CDS             complement(10264..11013)
                     /gene="yjfP"
                     /locus_tag="OQQ19_002471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HCS1804058.1"
                     /translation="MIEIESRELADIPVLHAYPVGQKDTPLPCVIFYHGFTSSSLVYS
                     YFAVALAQAGLRVIMPDAPDHGSRFSSDEARRLNQFWQILLQSMQEFTTLRAAIAEEN
                     WLLDDRLAVGGASMGAMTALGITARHPTVKCTASMMGSGYFTSLARSLFPPLIPETAA
                     QQNEFNNIIAPLAEWEATNHLEQLGDRPLLLWHGLDDDVVPADESLRLQQALSETGRD
                     KLLTCSWQPGVRHRITPEALDAAVTFFRQHL"
     gene            11195..11524
                     /gene="bsmA"
                     /locus_tag="OQQ19_002472"
     CDS             11195..11524
                     /gene="bsmA"
                     /locus_tag="OQQ19_002472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313192.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm peroxide resistance protein BsmA"
                     /protein_id="HCS1804059.1"
                     /translation="MVSRKRNSVIYRFASLLLVLMLSACSALQGTPQPAPPVTNHPQE
                     IRRDQTQGLQRIGSVSTMVRGSPDDALAEIRAKAVAAKADYYVVVMVDETIVTGQWYS
                     QAILYRK"
     gene            11673..11948
                     /gene="yjfN"
                     /locus_tag="OQQ19_002473"
     CDS             11673..11948
                     /gene="yjfN"
                     /locus_tag="OQQ19_002473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418609.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease activator YjfN"
                     /protein_id="HCS1804060.1"
                     /translation="MKQLLASPSLQLVTYPASATAQSAEFASADCVTGLNEIGQISVS
                     NISGDPQDVERIVALKADEQGASWYRIITMYEDQQPDNWRVQAILYA"
     gene            complement(12065..13690)
                     /locus_tag="OQQ19_002474"
     CDS             complement(12065..13690)
                     /locus_tag="OQQ19_002474"
                     /EC_number="1.3.8.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418608.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isovaleryl-CoA dehydrogenase"
                     /protein_id="HCS1804061.1"
                     /translation="MHWQTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLA
                     SIGQQLGTAESLELGRLANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHN
                     LAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTFAATPLLLQMLPTPFQDWTTPL
                     LSDRYDSLLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS
                     VPQSDAHLVLAQTTGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDA
                     IGWLLGQEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQ
                     PLMCHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPF
                     VAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQAGVYDLLS
                     EAFVEVKGQDRYFDRAVRRLQQQLRKPAEELGREITHQLFLLGCGAQMLKYASPPMAQ
                     AWCQVMLDTRGGVRLSEQIQNDLLLRATGGVCV"
     gene            complement(13774..14832)
                     /locus_tag="OQQ19_002475"
     CDS             complement(13774..14832)
                     /locus_tag="OQQ19_002475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HCS1804062.1"
                     /translation="MLRHNVPVRRDLDQIAANNGFDFHIIDNEIYWDESRAYRFTLRQ
                     IEEQIEKPTAELHQMCLEVVDRAVKDEEILTQLAIPPLYWDVIAESWRARDPSLYGRM
                     DFAWCGNAPVKLLEYNAIQERLISRFSELYSREPFYFCCCQDTDEDRSTVLYLQDCAQ
                     QAGQESRFIYIEDLGLGVGGVLTDLDDNVIQRAFKLYPLEWMMRDDNGPLLRKRREQW
                     VEPLWKSILSNKGLMPLLWRFFPGHPNLLASWFEGEKPQIAAGESYVRKPIYSREGGN
                     VTIFDGQNNVVDHADGDYADEPMIYQAFQPLPRFGDSYTLIGSWIVDDEACGMGIRED
                     NTLITKDTSRFVPHYIAG"
     gene            complement(14835..15473)
                     /locus_tag="OQQ19_002476"
     CDS             complement(14835..15473)
                     /locus_tag="OQQ19_002476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1190 domain-containing protein"
                     /protein_id="HCS1804063.1"
                     /translation="MARKRKSRNNSKIGHGAISRIGRPNNPFEPRRNRYAQKYLTLAL
                     MGGAAFFVLKGCGDSGDVDNDGDGTFYSTVQDCIDDGNNADICARGWNNAKAAFYADV
                     PKNMTQQNCQSKYENCYYDNVEQSWIPVVSGFLLSRVIRKDRDEPFVYNSGGSSFASR
                     PVWLNTSGDYSWRSGSGKKESYSSGGFTTKKASTVSRGGYGRSSSARGHWGG"
     gene            complement(15483..15881)
                     /locus_tag="OQQ19_002477"
     CDS             complement(15483..15881)
                     /locus_tag="OQQ19_002477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF350 domain-containing protein"
                     /protein_id="HCS1804064.1"
                     /translation="MHILDSLLAFSAYFFIGVAMVIIFLFIYSKITPHNEWQLIKNNN
                     TAVSLAFSGTLLGYVIPLSSAAINAVSIPDYFAWGGIALVIQLLVFAGVRLYMPALSE
                     KIINHNTAAGMFMGTAALAGGIFNAACMTW"
     gene            complement(15899..16558)
                     /locus_tag="OQQ19_002478"
     CDS             complement(15899..16558)
                     /locus_tag="OQQ19_002478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfK family protein"
                     /protein_id="HCS1804065.1"
                     /translation="MSGFFQRLFGKDNKPAIARGPLGLHLNSGFTLDTLAFRLLEDEL
                     LIALPGEEFTVAAVSRIDLGGGSQIFRYYTSGDEFLQINTTGGEDIDDIDDIKLFVYE
                     ESYGISKESHWREAINAKTMGAMTLNWQEKRWQRFFNSEEPGNIEPVYMLEKVENQNH
                     AKWEVHNFTMGYQRQVTEDTYEYLLLNGEESFNDLGEPEWLFSRALGVDIPLTSLHII
                     G"
     gene            complement(16609..17307)
                     /locus_tag="OQQ19_002479"
     CDS             complement(16609..17307)
                     /locus_tag="OQQ19_002479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HCS1804066.1"
                     /translation="MGILKSLFTLGKSFISQAEESIEETQGVRMLEQHIRDAKAELDK
                     AGKSRVDLLARVKLSHDKLKDLRERKASLEARALEALSKNVNPSLINEVAEEIARLEN
                     LITAEEQVLSNLEVSRDGVEKAVTATAQRIAQFEQQMEVVKATEAMQRAQQAVTTSTV
                     GASSSVSTAAESLKRLQTRQAERQARLDAAAQLEKVADGRDLDEKLAEAGIGGSNKSR
                     AQDVLARLQRQQGE"
     gene            complement(17380..>17501)
                     /locus_tag="OQQ19_002480"
     CDS             complement(17380..>17501)
                     /locus_tag="OQQ19_002480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2170 family protein"
                     /protein_id="HCS1804067.1"
                     /translation="KMMPLSSVGISSVQQEEYYIVFGALSLKSSLEDILLEIT"
BASE COUNT         4464 a         4676 c         4187 g         4174 t
ORIGIN      
        1 tcgtccaccg acaaaccagc aaaattaaaa tttcatcaat acgcacgcgc tacattactg
       61 tcaaatcgtg gaagagatca taattgcgat ggcagacgta ctgttgagat ccacaaacta
      121 gatctctctg actggcaagc attcaataag ttagcaacga agtgtaatgc ttacgatgga
      181 gtaacaatga atggtgataa ttcttttgga tggaaccatg aagctacatt agataatatt
      241 cacgcccaga aatacaataa agcttacgcg ggtgcgaggt taaccgcaga actgaaatat
      301 ttattgcaag atgtcgaatc cttcgaaccc aacagtaaat acacaataca cgaagtggtt
      361 ttgggacctg gttatggtac tccagactat accggccaaa cgataggata cgttgtaacc
      421 cttcctgccc aaatgcctaa ttgctggtca tctgaactac caacaatcga tctttatatc
      481 gaccaacttc acactgttac aggcgtttct aatgccctcg gattcatcat tgctgcattg
      541 ctaaacgcgt attctgattt accccatgat ttgaaaattg gtctgcgttc cttatcaaat
      601 tcagcagcaa tctactcggg tttaggtttc gagcgagtgc cgcaggaccg agacataagg
      661 agtgatcgta tgcatctaac gccagcaaac catcctgact tatggacaca agagaatggt
      721 gaatggatct acttgcgaaa ctaatacctg acgaaaaata gaaagcaaaa cgccgaccaa
      781 tggtcggcgt ttttacgtct cgttgaataa cgaattattc agctactacg tttacgatca
      841 ctttcgcgaa tacttcgctg tgaacctgga agctcacttc gtgttcgcca gtggtacgca
      901 gaacgccgtt cggcagacga acttcgctct tagccacttc aacgccagct gcagttacag
      961 cgtcagcgat gtcgcgagta ccgatggaac cgaacagttt accttcgtcg ccagctttag
     1021 acgcgatggt aacagtttcc agtgcattga ttttctcagc gcgagcatta gcagctgcca
     1081 gaacttcagc cagtttagct tccagttcag cgcgacgtgc ttcgaagaat tcaatgtttt
     1141 tcttggtagc tggaacagct ttaccctgcg gtaccaggaa gttacgagca tagcccgctt
     1201 taacgtttac ctgatcacct aggctaccca ggtttgctac tttatcaagc agaataactt
     1261 gcattacctt atcctctcaa agtcgtatta atggaccgtg accgattact gatggcgatc
     1321 agtgtacggc agcagggaca ggtagcgagc gcgtttgata gcgcgagcca gctgacgctg
     1381 gtattttgca cgggtaccgg tgatacggct tgggacaatc ttaccgcttt cggtgatgta
     1441 gtttttcagc gtagcgatat ctttatagtc gatctcttga acgccttccg cggtgaaacg
     1501 gcagaacttg cgacgacgga aataacgtgc catatggcta gtctccagaa tctatcaatt
     1561 caatctgctc ggcatgcaaa accattttgc tcagtccgtt ctttgccttg tggcatgaaa
     1621 tgaacccctg aacggttatg cgactgccga ccgttatact gtgagtaatg gcttggtttt
     1681 cgtgtccgct aacaataacg ggcatttggc accacgcctg ccggtgaaaa ccggcttcct
     1741 cctgcacaga atgatgctca agcacgaact ggcagtgagg aattcctgat ggactgacct
     1801 ttcgaagggg agtcctgcac acggtgccgg acaacaccag acggttggtc atcagaaatt
     1861 actcttcaga atccccagct tcagcatcat cagcggtttc gtttgcgaaa tcatcgcgac
     1921 gctcacggcg ctcgtctttc gctttaacca tcggagatgc ttcggtaaca gcgtgcttgg
     1981 tacgcataac catgctgcgg ataacggcat cgttgaagcg gaaggtagtt tccagctcat
     2041 cgatcacttc ctgcggagct tcaacgttca tcagaacgta gtgtgctttg tgcagtttgt
     2101 tgatcgggta agccagctga cggcggcccc agtcttccag acggtggatc ttgccttctg
     2161 caccagtgat ggcagcagtg tagcgctcga tcatgcccgg aacctgttcg ctctggtcag
     2221 gatggaccat aaaaacgatt tcgtaatgac gcatcgaatt gctccttacg gattattcag
     2281 cctcctgtct gggtcagccg aatcccgggg aggcaaggaa cgtgttaaag gtcggctgaa
     2341 aaatgacgcg ttatagtact tgtatgcccc actaaactca aggccagccg acaaataaat
     2401 ctcatctttc gctcaaaaga actaactcgc tgatttgaag ttcatcacat tccgtcacag
     2461 tgttttttcg aacaactgca tcagaaatgg tcaccatcaa cttctttatc attgattaaa
     2521 attaaatcag aagatcatca cagaggagag cacacaaagt cagccgtcga ggaggtatct
     2581 atgttcagtc gtgttttagc ccttctggct gtgcttttgc taagtgcaaa tacatgggca
     2641 gccattgaaa ttaataacca ccaggccaga aatatggacg acgtacagag cttaggcgtg
     2701 atttatatca atcataattt cgccactgaa agcgaagcac gtcaggcatt aaatgaagag
     2761 acagatgcgc agggcgcaac gtactaccac gtaattctga tgcgggaacc ggggagtaac
     2821 ggcaatatgc acgccagcgc ggatatttat cgctagcacc aggtataacc aacgaaacat
     2881 tgccatagtt tgctttgccc ccttcgcagg gggctttttt atacggttat tcaccggatt
     2941 gcgacttccg gatctggctc atgagtaatg cgattacgta agtcgcggcg cataatttct
     3001 attatccaga accagaaaat atgccccagg atttcagagg catattcgtc aaaaggcaat
     3061 tgagtgagcg gcggcgttaa attcagcgcc gggcaaaata taccgtggac tgccactgtc
     3121 acaataagcc ctgctaatat cccctgccat aatttcactt tcgggaaaat ttccgcgaca
     3181 atacaatacc ctatcgcaaa aaccagtgag aagatgatat gcgtcaccat caccgggttg
     3241 ataatatgtt ccgagaatgt atacacagtt tgggttgggt cgatacctaa ataatcccgt
     3301 agaaagatat acggcgggtt aaattcatcg cgaccaccgg aaaatgtgcg cggtggcaag
     3361 gggacttccg ctccccattt aacaaatgct gaaataattc ctgaaagtac acccacaagt
     3421 aacgcaacgc catagcggcg acgttgcgga tccgttctga caaacaatcc attgatagcc
     3481 ataaaaacac ctgttgttta tacgattttt taactgaagc ggccccggaa tcagaccaat
     3541 tacatcccgc aggaggtaat aattccgggg cgcactgctt acttctgccc gtaataggcg
     3601 ttaggaccgt gcttacgcat gaagtgttta ttcatgagga agctgtcgat gtgattcagt
     3661 tgtgggttaa tactgcgcgc aatccacgcc attttcgcca cttcttccat caccaccgcg
     3721 ttatgcaccg cgtcgtgggc atctttcccc caggcgaacg gcccgtgctg atacaccaca
     3781 attcccggcg tatgcagcgg ctcggcgtca cccagcgttt cgataatcac tttgccggtg
     3841 ttcagttcat actcgccctg cacctcttct tcgcttaatc cacgcgtaca cgggatgtcg
     3901 ccaaagaagt agtcggcgtg cgtggtgcct aacgccggga tcgccagccc cgcctgcgcc
     3961 catgcggtgg catgagtgga atgggtatgg acaatgccgc cgagcgacgg gtaacgacgg
     4021 tagagttcaa gatgcgtcgc ggtgtcagaa gacgggcgat acttcccttc taccaccttg
     4081 ccgctcatat cgaccaccac catatcgtct gctttcatgg tttcgtaggc aacgccgctg
     4141 ggcttgatca ccaccagccc gcgttcgcgg tcgatagcgc tgacgttgcc ccaggtaaag
     4201 gtcaccagcc catagcgcgg cagatccatg ttggcttcaa acacctgctg ttttagcttt
     4261 tgcattatgc cgcctccacc atgcctgctt tggccatgcg cgctttcacc caatcacgcg
     4321 ctttcaccac ttctgccgcc gggtcttccg ccgtttcgct ccacatctca atcaggtacg
     4381 gcccgcaata gccactctgt ttgagcgttt cgaagcaacg ttcgaaatcc accacacctt
     4441 cgccaaatgg cacgtttttg aagacgcccg gtttggtgtc tttcacatgc accgcgacga
     4501 tatgcccgat tccggcctgc aactccatct gcacatcgtt gtcccacgcc gacaggttgc
     4561 cgatatctgg gtagagctgg aaccacgggt tgttgagata gtgcgcgtaa cccagcgcct
     4621 tgctgatgga gttcatcaac ggataatcca tgatctccat cgccagcgtc acctgcgcgc
     4681 ggctcgccat ctcaacgctc tctttcaggc cgtcacggaa acgacgacgc gtttcgttat
     4741 tggcttcctg atagtaaacg tcatagcccg ccagctggat cacgcgaatg ccaacgtcct
     4801 gggcgaactg gatggcttta cgcataatct ccagcccctg cgcccgcacc gcgtcatctt
     4861 cgctgcccaa cgggaaacga cgatgggcag aaaggcacat ggacggcaca cgcacgccgg
     4921 tttcaacaat cgcattcacc agcgccagac gctgctcgcg gctccagtcg aggcgcgaca
     4981 ggcgctcgtc agtttcatct accgacatct cgacaaaatc gaagcccaac gtttttgcca
     5041 gtcgcaggcg ttccagccag cactccccgg cggggagcgc tttttcatag atgccaagcg
     5101 ggatttgttt ggacaacata tccgctcctt agccccacag ttcggcgatg gaacgtttga
     5161 actgacgcgc ggcttcaacc ggagaagcgg catcacggat gctgcgaccg gcgataaaca
     5221 catgaattgg aatgcctttg aacagcggca gatcttccag cgccaggcca ccggtgacgg
     5281 tgactttgaa gcccatatcg gaaagacgtt tgatcgcagt gatatcggct tcaccccacg
     5341 ccacgccagc ggcctgcgcg tcacggctgc ggtgataaac cacctgctga atacctgcgt
     5401 cgcgccactg ttgcgcctgt tcccaggtcc agtaaccggt cagttcgatc tgcacgtcgc
     5461 cgttaaactc ttttgctacg tccagcgcac ctttggcggt gttgatatcc gcacaacaaa
     5521 tcacggtcac ccagtcagcg ttggcttcga agcacatacg agaaagaatt ttgcccgcat
     5581 cggcaatttt ggcgtctgcc agcacgattt tgtgcgggta gagcgctttc agatcgcgaa
     5641 ccgcacgcac gccttcgccc acgcacagaa tggtacccac ttcgataatg tcgacttctt
     5701 cggcaatcag gcgagtggtt tcgtaggcgc tatccatagt ctggttgtcc agcgcgactt
     5761 gcaacatcgg taatgacatc ttcaattcct tcttaagctg ccgcgttggt gcggtcaatg
     5821 agatccagta cttcctgctc ggtacggcag gcacgtaaac ggtcgaaatt ttcttcatct
     5881 tcaaacaggt tgacgatctg catgatgccc acttcctggt gcgtgttggc atcgaccgcc
     5941 gccatggtga tgaggatatc caccgggtcg ttatcttcgt ggttgaactc cagcggcttt
     6001 ttcagcgtca ccagcgcaaa accggttttc ttaacgccct cttccgggcg accgtgcggc
     6061 attgccaggc ctggtgcgag cacaaagtac ggaccgtgct gttcaaccgc atccagaatc
     6121 gcctggtagt aacgcggctc gacaacatcc gccgccacca gcaggtcaac gccgattttt
     6181 actgcgtcct gccatgtctc agcttcagcc tgcaggcgga tggatttatt ctccgccagc
     6241 gaatcacgta atttcatggc gcgtccttac ttcacatcct gcgggaaatg cgctttgatc
     6301 acttccagca gtttcgggcc aaagtcggca ggagagagca tgttgcgcac gccaaccacg
     6361 tatttgttgc cggtcacggt gatttcgccc gcaatgtgcg tagaagcgat gatgatatcc
     6421 gcgccgctca actcgctttt gtattcgcca accgcgcagc tatttaccgt gtggtcaatg
     6481 tttgattggg ttaaaaactg gtccactttc atcttcatga tcatggaact gccttgtccg
     6541 ttgccacaca cagccagaat acgtacggtc ataatcaaaa ctccttatta agcagactgt
     6601 tctgccagtt gtttttctgc atcttcttct gcgcgcagtg cgcggccagc gaagaacata
     6661 taagccagtg caattacaat gatgacggcc ataaaggcga taccgatgga gaagaagccc
     6721 tgcatcatcg gcggtgccag aatcgaccag tccgccatgc ccatccaggc gctcataccg
     6781 gtgagtttca ccgcccagac gcagccaaag atttcaatca tccccatcac cagacatatc
     6841 ttcagcgccg cacgccagcc gccgaagtgg ttagcgaaca cgccgatggt ggcgttggag
     6901 aagaacatcg ggataaagcc gggaataatc aggatcgagg aaccgcaggc gaccaggatg
     6961 ccaaccgcaa tcagctgacc gatggtgccc cacataaagc cccaaaccac ggcgttcggc
     7021 gcgaagctat agatagccgc acagtcaatc gccagaaccg caccagggat caggcgctgg
     7081 gagataccgt taaatgcttc agagagttcc gccacaaaca tgcgcacgcc ctgagtgatg
     7141 atgaagatcg ccaccgcgaa ggagaaacca gtttgcagga tgtacaccgt ccagttcact
     7201 ttgcctgcca tcgcctgcac ggtgtcgata ccgaaggaga gtagaatggc accaaagaag
     7261 atggtcatca caatcgccgt ggagacgatg ttgtcgtgga aaatattcag ccagcctggc
     7321 agtttgaggt cttcaacgct ttcctctttt ttgccgagga acggcgcaac tttataggca
     7381 atccatgatg caaactgttg ctggtgaccg atggagaaac cgcagccgtc cgtcacttcc
     7441 tgagtcggct tgtacatcat attggaggta atgccccagt agagcgaaac cagaatcgcc
     7501 gtgcagataa tggttgtcca catggagtag ccgaaaataa acaacgtaac ggcaatcagc
     7561 cccgcctgct ggaacatgat atgaccagtc agcatgatgg tacgaatacc ggtaatgcga
     7621 cgcagcagca cgtaacagat gttcagcgcc agcgctaaca acaccgcgta acctacccag
     7681 ctataggcat cgcccatgcg gtcgatggtt gccatcatcg acgcgtaagt atcggaaatt
     7741 gcgccgttaa tgccgtagac ttcggacatt ttcgccacca ccggtttgaa ggtgctggtg
     7801 aggatgccgg accctgcctg caacaacatg aaaccaatta tggttttaat cgtgccttta
     7861 ataataacgc tgacactttt gcgcagtagg atgtagccca gacaggtcac aatacccagc
     7921 aacaacgggg cattggtcat gacctggtta aaaaacacgg taaagatgtt gtagagacga
     7981 tctcctgaag aagaggtaac cgggtattcc gcacacccgg aatgttgtgc actcactcta
     8041 attttcaaaa gcaatcacaa caagattatt tatgattaaa tgtgacgcga cccgcaaata
     8101 attccatacg gatagagtgg gattcacaca acgaaacaat tatttattta aatttagtta
     8161 aattcattta gttaatttaa ctatacattc cattaaatct ttccacactc aaaatcaaca
     8221 acaacttccc tggcaaaaag tcaaaaaatg gtcattgcct tcctgaaaaa atagtgtcag
     8281 gattaatcaa aaccaatcac atattgattc gaattgaact atcatgaagg taaatggcga
     8341 tgagtaaagt gaaaagtatc acccgagaat cctggatcct gagcactttc ccggagtggg
     8401 gtagctggct gaatgaagaa attgaacaag agcaggtcgc ccctggcaca tttgcgatgt
     8461 ggtggctagg ctgcaccggg atctggttga aatcagaagg tggcaccaac gtttgcgttg
     8521 atttctggtg cggcactggc aaacaaagtc acggtaaccc gttaatgaaa cagggtcacc
     8581 agatgcagcg catggctggc gtgaaaaaac tgcagccaaa cctacgcacc cccccgtttg
     8641 ttcttgatcc gtttgcgatt cgccagatcg acgcggtact ggcgactcac gatcacaacg
     8701 atcatatcga cgttaacgtc gctgctgccg tgatgcagaa ctgtgctgat gacgtaccat
     8761 tcattggacc gaaaacctgc gttgatttgt ggattggctg gggcgtaccg aaagagcgtt
     8821 gcatcgtggt caaaccgggc gatgtggtga aagtgaaaga cattgaaatt catgcgcttg
     8881 atgctttcga ccgtactgca ctgatcaccc tgcctgccga tcaaaaagcg gctggcgtac
     8941 tgccggacgg catggacgat cgcgcggtga actatctgtt caaaacgcct ggcggctccc
     9001 tgtatcacag cggcgactcc cactactcta actattatgc gaagcacggt aacgaacatc
     9061 agatcgacgt ggctttaggt tcatacggcg aaaacccgcg cggtatcacc gacaaaatga
     9121 ccagcgccga tatgctgcgt atgggtgaag ccctgaatgc gaaagtggtt atcccgttcc
     9181 accacgatat ctggtcaaac ttccaggccg ctccgcaaga gatccgcgtg cagtgggaga
     9241 tgaaaaaaga tcgtctgaag tatggcttca agccgtttat ctggcaggtt ggcggcaaat
     9301 ttacctggcc actggataaa gacaacttcg agtaccacta tccgcgcggt ttcgatgatt
     9361 gcttcactat tgaaccggat ctgccgttca aatcattcct gtaatctgtc gtttataccg
     9421 gatagcgtgg agaagttcgc gctatccggc gtagtatttc ctggctattt caaatatcat
     9481 ctaaaaaaat caaattttat cggaatagct catgactgaa gcacaaagac atcaaatcct
     9541 cctggaaatg ctcgcacaat tgggctttgt gaccgttgag aaagtcgttg agcgtctggg
     9601 aatttcgcct gccactgcgc gacgcgatat caataaactt gacgaaagcg gcaaactcaa
     9661 aaaggtgcgc aatggcgcag aagctattac ccaacagcgc ccgcgctgga cgccgatgaa
     9721 tctgcatcag gcgcagaatc acgatgaaaa agtacgtatt gctaaagcgg cctcgcagct
     9781 ggttaatccg ggcgaaagcg tagtcatcaa ctgcggctcc accgcgtttc tgcttgggcg
     9841 ggaaatgtgt ggcaagccag tgcaaatcat cactaattat ctaccgctgg caaattacct
     9901 gatcgatcaa gaacatgaca gcgtgatcat tatgggtgga cagtacaaca aaagtcagtc
     9961 catcacttta agcccgcagg gcagcgaaaa cagtctctat gccgggcact ggatgtttac
    10021 cagcggaaaa gggctgaccg cagaagggtt gtataaaacc gatatgctga cagcaatggc
    10081 agagcagaag atgctgagcg tggtagggaa actggtggta ctggttgata gcagtaagat
    10141 tggcgaacgc gcgggaatgc tttttagccg tgccgatcaa atcgatatgc ttatcaccgg
    10201 caaaaatgct aacccggaaa tcctgcaaca actggaagcg caaggggtca gcattctgcg
    10261 tgtttaaaga tgctggcgga aaaatgtcac ggcagcatct aacgcctcag gcgtaatgcg
    10321 gtgacgcacg cctggctgcc atgaacaggt tagcagttta tcccgtcccg tctcgcttaa
    10381 ggcctgctgc aaacgtagtg attcgtcggc aggcacaacg tcatcgtcga ggccatgcca
    10441 cagcagtaga ggtctgtccc caagttgttc caggtggttt gtcgcttccc actctgccag
    10501 cggcgcgata atgttattga attcattctg ctgtgctgcc gtttcaggta tcagcggtgg
    10561 aaacagtgaa cgggcgagcg atgtaaaata gcccgatccc atcatgctgg cggtacattt
    10621 caccgtgggg tggcgagcgg taattcccag tgccgtcatc gcgcccatcg acgcgccacc
    10681 gactgccaga cggtcatcaa gcagccagtt ttcttcggct attgccgcac gtaaagtagt
    10741 gaattcctgc atactttgta gcaagatttg ccagaattga tttaaccgcc gcgcttcgtc
    10801 gctactaaaa cggctaccgt gatcgggcgc atccggcatg atcacccgca aaccagcctg
    10861 cgccagcgca acggcaaaat agctatacac caggctggat gaagtaaagc cgtgataaaa
    10921 aattacgcac ggtaacgggg tatctttttg cccgacagga taagcatgaa gaacgggaat
    10981 atctgccagc tcgcgtgatt ctatttcaat catctgtctc tcctttttgt ctggtatgac
    11041 atgaagaaat ccttagcaca agtttctgct ggcggtatta gttcataatg ttgagatgtg
    11101 ggttacgctt tcgtcacgtt ttcattcgaa aatcgcgtac caggtaacaa ttcgggaaca
    11161 ttcccccaaa gttaaattaa taaggcacta cactatggtt agcaggaaac gtaatagcgt
    11221 tatttaccgg tttgccagtt tattattggt gttgatgtta agtgcctgta gcgcactgca
    11281 aggtacgcca cagccagcac cgccagtaac gaaccatccg caagagattc gccgcgacca
    11341 gacgcaaggg ttacagcgaa taggtagcgt aagcacgatg gttcggggtt ctccggatga
    11401 cgcattagca gaaatcagag caaaagctgt cgctgcaaaa gctgattatt acgttgtcgt
    11461 catggtggac gaaaccatcg tgacaggaca gtggtattca caagccattt tgtaccgtaa
    11521 ataaatcaga caacttacat agtcagcttt acattgcttt gcgtccctat gcgtttacct
    11581 gtgcacaata aattaccggc tggaagcctg ggcgtttatt accgcgatgg aatgccctgc
    11641 aacatgtggg gaaacgaaaa atggagctga cgatgaaaca attacttgct tcaccctcgc
    11701 tgcaattagt gacttatcct gcgagcgcca cggcacagtc tgcagaattc gccagtgctg
    11761 actgcgtgac gggcctgaat gaaataggtc agatctcagt tagcaatatt tcaggggatc
    11821 cgcaggacgt ggaacgtatc gtggcgttaa aggccgatga acaaggtgcg tcatggtacc
    11881 gcattattac catgtacgaa gaccagcagc ctgataactg gcgcgtacag gcgatactgt
    11941 atgcatgagt gtcatctaca gcaaatgaac aatgccggat tcggcgcgag cgccttgtcc
    12001 ggcctacaat tttcacatat ttcattgagt taatcgaaac cagcgtcgca tcagtcgtat
    12061 acgcttacac acacactccc cccgtcgccc gcagcaataa atcattctgg atctgctctg
    12121 acaaccgtac gccgccgcgc gtatctaaca tcacctgaca ccacgcctgc gccattggcg
    12181 gagaagcata tttcaacatt tgcgcaccgc agcccagcag gaatagctga tgagtaatct
    12241 ctcgccccag ttcttcagct ggcttacgca gctgctgctg taaacgacga accgcgcgat
    12301 caaaatagcg atcctgccct ttcacttcca caaatgcttc cgacaataag tcgtatacgc
    12361 ccgcttgctt attgagaacg cgcaacacat ccaggcacat aatattgccg gaaccttccc
    12421 aaatactgtt taccggcatc tcccggtaaa gccgcggcag ctcgctctcc tcgcaataac
    12481 caatgccgcc cagcacctcc atcgcttcgg ccacaaacgg catacctctt ttgcagatca
    12541 caaattttgc cgcaggcgta aataaacgcg cccacagggc ttctttggca tcggcacgcc
    12601 ggtcccacgc tcgcgcaaga cgaaacagca acgccgtttg cccttcaagc tgaagtgcca
    12661 tgcgacttaa gacatgacac ataaggggct gttggatcaa tggattacca aaaacatggc
    12721 gttgatgtgc atgataaatc gccagcgaaa atgcacggcg catcatggca tggctaccca
    12781 gggcgcaatc aaaacgcgtc atcccaccca ttttcaggat cagacgaatt ccttcccctt
    12841 cctgccccaa caaccagcca atggcatcct gaaactccac ttcgcaactg gcgttagagc
    12901 gattacccag cttatctttc agccgctcga ggcgaatcgc gttgcgttgc ccatcaggca
    12961 aaaagcgcgg cacaaaaaag caggacaaac cgcccgtagt ctgcgccagc accagatgcg
    13021 catcgctttg cggcaccgag aaaaaccatt tatgccccac cagccgataa gagccatctt
    13081 ccagacgctc tgcacgggtg gtgttgctca tgacatcgga accgccctgc ttttccgtca
    13141 ttcccatgcc aatcaacaaa ccgcgttttt gcccacctgg caataagaga gaatcgtagc
    13201 gatcgctcag cagcggcgtg gtccagtcct gaaacggcgt gggtaacatc tgtaacaaca
    13261 atggcgtggc ggcaaaggtc atcgttattg gacataacga cccagcctca acctgcgcat
    13321 gtaacataaa acgcgccgcg cgcgccacaa atgcgccgga gcgagcgtct tcttcccagg
    13381 caagattgtg cacccgattg gtacataacg cctgcatcag caggtgccag gcggggtgaa
    13441 aacgcacatc gtccagacgg cgtccttgcg catcgtagcg caataattca ggcggattca
    13501 cattcgccag ccgccccagt tcaagagatt cagccgttcc taactgctga ccaatactgg
    13561 ctagaaaatc gctatcccag ccagcacctt cacgcgttac cgcttcacag agcgcgccat
    13621 cagacaggta taagttgctg ttatttaatg gtataggttg attaaaaacg gtgtgagttt
    13681 gccagtgcac tgtgtctccc tccatcaatg gcagtcaccc ttagtatggt cactgccatg
    13741 gattcctgac agaaagagat tgctaaaaca ttcttatcca gcaatgtaat gcggaacgaa
    13801 acgtgaggtg tctttggtga tcagcgtgtt atcttcacgg atccccattc cgcacgcttc
    13861 atcatcgaca atccagctac cgatgagtgt gtagctatcg ccaaatcgcg gcagaggttg
    13921 aaacgcctgg tagatcatcg gttcatcggc gtaatcacca tcagcgtggt caacgacgtt
    13981 attctgaccg tcgaaaatgg tgacgtttcc gccttcgcgt gagtagatcg gtttacgcac
    14041 atagctttcg ccagcggcaa tctgcggttt ttcgccctca aaccaggatg caagaaggtt
    14101 aggatgacca ggaaagaagc gccaaagcag cggcattagc cctttattac tcaagatact
    14161 tttccataac ggctccaccc attgctcgcg acgcttgcgc agcagcggac cgttatcgtc
    14221 acgcatcatc cactccagcg gatacagctt aaatgcacgc tggatgacat tatcatcaag
    14281 atcggtcagt acgccgccga cgcccaaacc gagatcttca atgtagataa accgcgactc
    14341 ctgccctgcc tgctgggcgc agtcctgcaa gtacagcacg gtactcctgt cttcatcggt
    14401 gtcctgacag cagcaaaaat aaaacggttc ccgactgtaa agctcactaa agcgcgaaat
    14461 caggcgttcc tgaatggcgt tgtactccag cagcttcacc ggcgcattgc cacaccaggc
    14521 aaaatccatc cggccataca gcgaaggatc gcgtgcgcgc cagctttcgg cgatcacatc
    14581 ccagtacaac ggcgggatcg ccagttgcgt caggatctct tcgtctttaa ccgcgcgatc
    14641 caccacctca aggcacatct gatgcagttc cgcagtcggt ttttcgatct gctcttcaat
    14701 ctggcgcaga gtaaaacggt aagcccgact ctcgtcccaa tagatttcat tgtcgatgat
    14761 atgaaagtcg aaaccgttgt tagcggcgat ctggtccaga tcccgtcgca caggaacgtt
    14821 gtgtctcagc atgattagcc tccccaatgc ccacgggcgc tggaagaacg accatagccg
    14881 ccgcgcgaaa cggttgacgc ttttttggtg gtaaagccgc ctgaagagta agactctttt
    14941 ttgccagaac cggagcgcca ggagtaatca ccggaagtgt tgagccagac ggggcgggaa
    15001 gcaaatgagg atccgccgct gttatagacg aacggctcat cgcgatcttt acgaataacc
    15061 cggcttaaca aaaatccaga aacgaccggg atccaactct gttcaacatt gtcgtagtag
    15121 caattttcgt acttagactg acaattctgc tgagtcatat tcttcggaac atcggcataa
    15181 aatgccgctt tggcgttgtt ccagccacgc gcgcaaatgt cggcattatt accgtcatca
    15241 atacaatcct gcactgtcga ataaaacgtt ccgtcgccgt cgttatcgac atcgccacta
    15301 tcgccacaac ctttcaatac aaaaaaagcg gcaccgccca ttagcgccaa cgttaagtat
    15361 ttttgtgcgt agcgattgcg acgcggttca aaaggattat tcggtctacc aatgcgactg
    15421 atcgctccgt gaccaatttt actgttattt cttgatttgc gttttctggc catgatcgtc
    15481 cattaccatg tcatacaagc tgcgttaaaa ataccgccag ccagcgcggc ggttcccata
    15541 aacattcctg ctgcggtatt gtgattaata attttttcgc ttaatgcggg catataaagt
    15601 ctgacaccag caaaaacgag taactgaatc accagtgcaa tcccgcccca ggcgaaatag
    15661 tctggaatac tcaccgcatt gattgccgca ctggataagg ggatcacgta acccaacaat
    15721 gtaccgctga atgccagtga caccgcggta ttattgtttt tgattaattg ccattcgttg
    15781 tgcggtgtaa ttttggagta gataaacaga aaaataatca ccatagccac gccaataaaa
    15841 aaataggcac taaaggcaag aagtgaatcc agtatatgca ttgtaaacgt ccttgtaatt
    15901 aaccaataat atgaagtgat gtcagcggga tatcgacacc caacgcgcgc gaaaataacc
    15961 actctggctc gccgagatcg ttaaaagatt cctcaccatt taacagtaaa tattcgtaag
    16021 tatcttcggt tacttgccgc tggtagccca tggtaaaatt atggacctcc catttggcat
    16081 ggttttgatt ttctactttt tccagcatgt agacgggttc gatatttccc ggttcttcgc
    16141 tgttaaaaaa tcgctgccag cgtttttcct gccagtttaa ggtcattgcc cccatcgttt
    16201 tggcgttgat cgcctcgcgc cagtgactct ctttactgat accgtagctc tcttcataga
    16261 caaagagctt gatatcatca atgtcatcaa tatcttcgcc gccggtggta ttgatttgca
    16321 gaaattcatc gcctgaagtg tagtaacgga aaatctggct accgcctccc agatcgatgc
    16381 ggctgacagc ggctaccgta aattcctcac ccggtagcgc aatcagcaat tcatcttcca
    16441 gcaaacgaaa cgctaacgtg tcgagcgtaa agccactatt gagatgaagt cccagcggac
    16501 cgcgagcgat agcaggctta ttatccttgc caaacagacg ctggaaaaaa ccagacatat
    16561 tttatcctta aaatagttgc cagcctttta gcgaggctgg caaaaaaatt actcgccctg
    16621 ttggcgttgc agtcttgcta atacatcctg ggctctactt ttattgctac cgccaattcc
    16681 ggcttccgcc agcttttcgt caaggtcgcg accgtctgcg actttctcca actgtgcggc
    16741 agcatccagg cgagcctgac gttcggcctg acgcgtttgc aggcgtttta aggattctgc
    16801 cgctgtcgaa acgctggaag atgcgccaac ggtagaggtt gttacagcct gttgtgcacg
    16861 ctgcatggct tcagtggctt taacgacttc catttgctgc tcaaactgag cgatacgctg
    16921 cgctgtcgct gtaactgctt tttccacgcc atcacgggag acttccagat tcgacaacac
    16981 ttgctcttca gcggtaatga gattctcaag gcgcgcgatt tcttcagcaa cttcgttaat
    17041 caacgacgga ttaacgttct tgcttaacgc ttccagcgca cgggcttcca gactggcttt
    17101 gcgctcacgt aaatctttca gcttatcgtg acttaatttc acccgcgcca gcagatcaac
    17161 gcgagatttt ccggctttat cgagttcagc tttagcgtca cgaatatgct gttccagcat
    17221 gcgcacgccc tgggtttctt caatggattc ttccgcctgg gagataaacg atttccccag
    17281 cgtaaataaa ctttttaaaa ttcccataaa tacccgtcct tgtaattagt gtgaatattc
    17341 ttctgtaatt tcagccagat ccaatgcgtt atctaccagc taggttatct caagcaggat
    17401 atcttcaaga gaagatttaa gcgataacgc cccgaaaaca atgtaatact cttcctgttg
    17461 cacgctggag attcctaccg atgacaacgg catcatcttc t
//
LOCUS       DAJVSY010000083        17495 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.083, whole genome shotgun sequence.
ACCESSION   DAJVSY010000083 DAJVSY010000000
VERSION     DAJVSY010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17495)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17495)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17495
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.083"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..642)
                     /locus_tag="OQQ19_002481"
     CDS             complement(<1..642)
                     /locus_tag="OQQ19_002481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000055794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HCS1804068.1"
                     /translation="MSLNFTVIVWLRLSIGGVYELAFCRSSLKSKKYFIILLALAAIA
                     GLGTHAAWSSNGLPRIDNKTLARLAQQHPVVVLFRHAERCDRSTNQCLSDKTGITVKG
                     TQDARELGNAFSADIPDFDLYSSNTVRTIQSATWFSAGKKLTVDKRLLQCGNEIYSAI
                     KDLQSKAPDKNIVIFTHNHCLTYIAKNKRDATFKPDYLDGLVMHVEKGKVYLDG"
     gene            893..2032
                     /gene="arnB"
                     /locus_tag="OQQ19_002482"
     CDS             893..2032
                     /gene="arnB"
                     /locus_tag="OQQ19_002482"
                     /EC_number="2.6.1.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_024188371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4-deoxy-L-arabinose
                     aminotransferase"
                     /protein_id="HCS1804069.1"
                     /translation="MSEFLPFSRPAMGVEELAAVKEVLESGWITTGPKNQALEQAFCQ
                     LTGNQHAIAVSSATAGMHITLMALEIGKGDEVITPSLTWVSTLNMISLLGATPVMVDV
                     DRDTLMVTPEAIESAITPRTKAIIPVHYAGAPADIDAIRAIGERYGIAVIEDAAHAVG
                     TYYKGRHIGAKGTAIFSFHAIKNITCAEGGLIVTDNENLARQLRMLKFHGLGVDAYDR
                     QTWGRAPQAEVLTPGYKYNLTDINAAIALTQLAKLEHLNTRRREIAQQYQQALAALPF
                     QPLSLPAWPHVHAWHLFIIRVDEQRCGISRDALMEALKERGIGTGLHFRAAHTQKYYR
                     ERFPTLSLPNTEWNSERICSLPLFPDMTTADADRVITALQQLAGQ"
     gene            2036..3004
                     /gene="arnC"
                     /locus_tag="OQQ19_002483"
     CDS             2036..3004
                     /gene="arnC"
                     /locus_tag="OQQ19_002483"
                     /EC_number="2.4.2.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-phosphate
                     4-deoxy-4-formamido-L-arabinose transferase"
                     /protein_id="HCS1804070.1"
                     /translation="MFEIHPVKKVSVVIPVYNEQESLPELIRRTTTACESLGKEYEIL
                     LIDDGSSDNSAHMLVEASQAENSHIVSILLNRNYGQHSAIMAGFSHVTGDLIITLDAD
                     LQNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYG
                     CMLRAYRRHIVDAMLHCHERSTFIPILANIFARRAIEIPVHHAEREFGESKYSFMRLI
                     NLMYDLVTCLTTTPLRMLSLLGSIIAIGGFSIAVLLVILRLTFGPQWAAEGVFMLFAV
                     LFTFIGAQFIGMGLLGEYIGRIYTDVRARPRYFVQQVIRPSSKENE"
     gene            3004..4986
                     /gene="arnA"
                     /locus_tag="OQQ19_002484"
     CDS             3004..4986
                     /gene="arnA"
                     /locus_tag="OQQ19_002484"
                     /EC_number="1.1.1.305"
                     /EC_number="2.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-4-amino-4-deoxy-L-arabinose
                     formyltransferase/UDP-glucuronic acid oxidase ArnA"
                     /protein_id="HCS1804071.1"
                     /translation="MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGS
                     VAHLAAERGIPVYAPDNVNHPLWVERIAQLSPEVIFSFYYRHLICDEILQLAPAGAFN
                     LHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRVAIAPDDIAIT
                     LHHKLCHATRQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLH
                     NMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISIAPLLIACGDGALEI
                     VTGQAGDGITMQGSQLAQTLGLVQGSRLNSQPACTARRRTRVLILGVNGFIGNHLTER
                     LLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI
                     ATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSN
                     LIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGS
                     SRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIG
                     NPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIR
                     NAHRCLDWEPKIDMQETIDETLDFFLRTVDLTDKPS"
     gene            4983..5873
                     /locus_tag="OQQ19_002485"
     CDS             4983..5873
                     /locus_tag="OQQ19_002485"
                     /EC_number="3.5.1.n3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-deoxy-4-formamido-L-arabinose-
                     phosphoundecaprenol deformylase"
                     /protein_id="HCS1804072.1"
                     /translation="MTKVGLRIDVDTFRGTREGVPRLLEILSKHNIQASIFFSVGPDN
                     MGRHLWRLVKPQFLWKMLRSNAASLYGWDILLAGTAWPGKEIGHANADIIREAAKHHE
                     VGLHAWDHHAWQARSGNWDRQTMIDDIARGLRTLEEIIGQPVTCSAAAGWRADQKVIE
                     AKEAFHLRYNSDCRGAMPFRPLLESGNPGTAQIPVTLPTWDEVIGRDVKTEDFNGWLL
                     NRILRDKGTPVYTIHAEVEGCAYQHNFVDLLKRAAQEGVTFCPLSELLSETLPLGQVV
                     RGNIAGREGWLGCQQIAGSR"
     gene            5873..7525
                     /gene="arnT"
                     /locus_tag="OQQ19_002486"
     CDS             5873..7525
                     /gene="arnT"
                     /locus_tag="OQQ19_002486"
                     /EC_number="2.4.2.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A)
                     4-amino-4-deoxy-L-arabinosyltransferase"
                     /protein_id="HCS1804073.1"
                     /translation="MKSVRYLIGLFAFIACYYLLPISTRLLWQPDETRYAEISREMLA
                     SGDWIVPHLLGLRYFEKPIAGYWINSIGQWLFGANNFGVRAGVIFATLLTAALVTWFT
                     LRLWRDKRLALLATVIYLSLFIVYAIGTYAVLDPFIAFWLVAGMCSFWLAMQAQTWKG
                     KSAGFLLLGITCGMGVMTKGFLALAVPVLSVLPWVATQKRWKDLFIYGWLAVISCVLT
                     VLPWGLAIAQREPDFWHYFFWVEHIQRFALDDAQHRAPFWYYVPVIIAGSLPWLGLLP
                     GALYTGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSCFASLAMLMAHYALLA
                     AKNNPLALRINGWINIAFGVTGIIATFVVSPWGPMNTPVWQTFESYKVFCAWSIFSLW
                     AFFGWYTLTNVEKTWSFAALCPLGLALLVGFSIPDRVMEGKHPQFFVEMTQESLQPSR
                     YILTDSVGVAAGLAWSLQRDDIIMYRQTGELKYGLNYPDAKGRFVSGDEFANWLNQHR
                     QEGIITLVLSVDRDEDINSLAIPPADAIDRQERLVLIQYRPK"
     gene            7522..7857
                     /gene="arnE"
                     /locus_tag="OQQ19_002487"
     CDS             7522..7857
                     /gene="arnE"
                     /locus_tag="OQQ19_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxy-L-arabinose-phosphoundecaprenol
                     flippase subunit ArnE"
                     /protein_id="HCS1804074.1"
                     /translation="MIWLTLVFASLLSVAGQLCQKQATCFVAINKRRKHIVLWLGLAL
                     ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIG
                     GIVILGSTV"
     gene            7857..8243
                     /gene="arnF"
                     /locus_tag="OQQ19_002488"
     CDS             7857..8243
                     /gene="arnF"
                     /locus_tag="OQQ19_002488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311173.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxy-L-arabinose-phosphoundecaprenol
                     flippase subunit ArnF"
                     /protein_id="HCS1804075.1"
                     /translation="MGLIWGLFSVIIASVAQLSLGFAASHLPPMTHLWDFIAALLAFG
                     LDARILLLGLLGYLLSVFCWYKTLHKLALSKAYALLSMSYVLVWIASMVLPGWEGTFS
                     LKALLGVACIMSGLMLIFLPTTKQRY"
     gene            complement(8237..8503)
                     /gene="pmrD"
                     /locus_tag="OQQ19_002489"
     CDS             complement(8237..8503)
                     /gene="pmrD"
                     /locus_tag="OQQ19_002489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416762.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal transduction protein PmrD"
                     /protein_id="HCS1804076.1"
                     /translation="MEWLVKKSCCNKQDNRHVLMLCDAGGAIKMIAEVKSDFAVKVGD
                     LLSPLQNALYCINREKLHTVKVLSASSYSPDEWERQCTAAGKTQ"
     gene            complement(8613..9968)
                     /gene="menE"
                     /locus_tag="OQQ19_002490"
     CDS             complement(8613..9968)
                     /gene="menE"
                     /locus_tag="OQQ19_002490"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HCS1804077.1"
                     /translation="MIFSDWPWRHWRQVRGEAIALRLNDEQLNWRELCARVDELATGF
                     AAQGVVEGSGVMLRAWNTPQTLLAWLALLQCGARVLPVNPQLPQPLLEELLPNLTLQY
                     ALVLEGENTFPALTSLHIQMVEGTHSALWQPTRLCSMTLTSGSTGLPKAAVHTYQAHL
                     ASAQGVLSLIPFGDHDDWLLSLPLFHVSGQGIMWRWLYAGARMTVRDKQPLEQMLAGC
                     THASLVPTQLWRLLVNRSSVSLKAVLLGGAAIPVELTEQAREQGIRCFCGYGLTEFAS
                     TVCAKEADGLADVGSPLPGREVKIVNNEVWLRAASMAEGYWRNGQLVSLVNDEGWYAT
                     RDRGEMHNGKLTIVGRLDNLLFSGGEGIQPEEVERVIAAHPAVLQVFIVPVADKEFGH
                     RPVAVVEYDQQTVDLGEWVKDKLARFQQPVRWLTLPPELKNGGIKISRQALKEWVQRQ
                     Q"
     gene            complement(9965..10927)
                     /gene="menC"
                     /locus_tag="OQQ19_002491"
     CDS             complement(9965..10927)
                     /gene="menC"
                     /locus_tag="OQQ19_002491"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HCS1804078.1"
                     /translation="MRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREGEREGWGE
                     ISPLPGFSQETWEEAQSVLLAWVNNWLAGDCELLQMPSIAFGVSCALAELADTLPQAA
                     NYRAAPLCNGDPDDLILKLADMPGEKVAKVKVGLYEAVRDGMVVNLLLEAIPDLHLRL
                     DANRAWTPLKGQQFAKYVNPDYRHRIAFLEEPCKTRDDSRAFARETGIAIAWDESLRE
                     PDFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALRLTAVISSSIESSLGLTQLAR
                     IAAWLTPDTIPGLDTLDLMQAQQVRRWPGSTLPVVEVDALERLL"
     gene            complement(10927..11784)
                     /gene="menB"
                     /locus_tag="OQQ19_002492"
     CDS             complement(10927..11784)
                     /gene="menB"
                     /locus_tag="OQQ19_002492"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001641973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HCS1804079.1"
                     /translation="MIYPDEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQV
                     RNAFRPLTVKEMIQALADARYDDNVGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSG
                     VHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVG
                     SFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWC
                     REMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQP
                     DFSKFKRNP"
     gene            complement(11799..12557)
                     /gene="menH"
                     /locus_tag="OQQ19_002493"
     CDS             complement(11799..12557)
                     /gene="menH"
                     /locus_tag="OQQ19_002493"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HCS1804080.1"
                     /translation="MILHAQAKHGKPGLPWLVFLHGFSGDCHEWQEVGEAFADYSRLY
                     VDLPGHGGSAAISVDGFDEVTDLLRKTLVSYNILDFWLVGYSLGGRVAMMAACQGLAG
                     LCGVIVEGGHPGLQNAEQRAERQRSDRQWAQRFRTEPLTAVFADWYQQPVFASLNDDQ
                     RRELVALRSNNNGATLAAMLEATSLAVQPDLRANLSARTFAFYYLCGERDSKFRALAA
                     ELAADCHVIPRVGHNAHRENPAGVIASLAQILRF"
     gene            complement(12554..14224)
                     /gene="menD"
                     /locus_tag="OQQ19_002494"
     CDS             complement(12554..14224)
                     /gene="menD"
                     /locus_tag="OQQ19_002494"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HCS1804081.1"
                     /translation="MSVSAFNRRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAAEN
                     SAFIHHTHFDERGVGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLIL
                     LTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLH
                     AGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPSLESEKQRDWFFWR
                     QKRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSEL
                     QQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWL
                     ELHPAEKRQPWCVEIPRLAEQAMQAVIARRDAFGEAQLAHRISDYLPEQGQLFVGNSL
                     VVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLN
                     ALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKY
                     HRPQNWQELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLLAQVSHL"
     gene            complement(14313..15608)
                     /gene="menF"
                     /locus_tag="OQQ19_002495"
     CDS             complement(14313..15608)
                     /gene="menF"
                     /locus_tag="OQQ19_002495"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416768.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase MenF"
                     /protein_id="HCS1804082.1"
                     /translation="MQSLTTALENLLRHLSQEIPATPGIRVIDIPFPLKDAFDALSWL
                     ASQQTYPQFYWQQRNGDEEAAVLGAITRFTSLDQAQRFLRQHPEHADLRIWGLNAFDP
                     SQGNLLLPRLEWRRCGGKATLRLTLFSESSLQHDAIQAKEFIATLVSIKPLPGLHLTT
                     TREQHWPDKTGWTQLIELATKTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLN
                     LNCYHFYMAFDGENAFLGSSPERLWRRRDKALRTEALAGTVANHPDDKQAQQLEEWLM
                     ADDKNQRENMLVVEDICQRLQADTQTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVI
                     CLHQLQPTAAVAGLPRDLARQFIARHEPFTREWYAGSAGYLSLQQSEFCVSLRSAKIS
                     GNVVRLYAGAGIVRGSDPEQEWQEIDNKAAGLRTLLQME"
     gene            complement(15687..15992)
                     /gene="elaB"
                     /locus_tag="OQQ19_002496"
     CDS             complement(15687..15992)
                     /gene="elaB"
                     /locus_tag="OQQ19_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein ElaB"
                     /protein_id="HCS1804083.1"
                     /translation="MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAE
                     KALDDVKKRVSQVSDSYYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLLLARR"
     gene            complement(16047..16508)
                     /locus_tag="OQQ19_002497"
     CDS             complement(16047..16508)
                     /locus_tag="OQQ19_002497"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1804084.1"
                     /translation="MIEWQDLHHSELSVSQLYALLQLRCAVFVVEQNCPYQDIDGDDL
                     TGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLDT
                     CTHHWPDKPVYLGAQAHLQNFYQSFGFIPVTEVYEEDGIPHIGMAREVIQA"
     gene            16573..17490
                     /gene="rbn"
                     /locus_tag="OQQ19_002498"
     CDS             16573..17490
                     /gene="rbn"
                     /locus_tag="OQQ19_002498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease BN"
                     /protein_id="HCS1804085.1"
                     /translation="MELIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQ
                     HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVE
                     TALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALN
                     AQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDA
                     ALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYD
                     DKGCQHLLRECRSIFPATELANDFTVFNV"
BASE COUNT         4113 a         4698 c         4437 g         4247 t
ORIGIN      
        1 cccatccaga taaactttgc ctttttccac atgcatgact aaaccatcca gataatcagg
       61 tttaaatgtc gcatcacgct tatttttagc aatatatgtc aggcaatgat tatgggtgaa
      121 aataacgata tttttatcag gcgctttgct ttgtaagtcc ttaattgcac tataaatctc
      181 attaccgcac tgaagaagtc gtttatctac cgtcagcttt ttacccgcgg aaaaccaggt
      241 cgccgactga atggtccgga cggtattact ggaataaaga tcgaaatcag ggatgtcagc
      301 gctaaaagcg ttgcccagtt cacgggcatc ctgggtacct ttaaccgtaa tacctgtttt
      361 atctgacaag cattgattgg ttgaacgatc gcaacgttca gcatggcgaa acaaaacgac
      421 aaccgggtgc tgctgtgcca gtctggccaa tgttttattg tcgatacgtg gcaaaccatt
      481 gctactccag gcggcatgag tacccagtcc ggcaattgca gcgagcgcca gtaaaatgat
      541 gaaatatttt tttgacttca atgatgagcg gcaaaaagct aactcgtaaa ctccacctat
      601 agacaagcgc aaccagacaa ttaccgtgaa attgagcgac atttctggcg ataattagca
      661 gttggtgtaa tattaaaaat cctacgatgt cggcaaaatg cctcaaaatt ttgccaaatg
      721 caaagcctaa ataagaaaaa atataaaaat ttcaatattt acgtctaata ttagtttctt
      781 aaggttaagt taatattcta tccttaaaat ttcgttccaa atggcaaaat atacacaaca
      841 ctctttatag caaatataag tggacaggta ttcaatggcg gaaggaaaag caatgtcaga
      901 atttttgcct ttttcgcgac cagcaatggg cgtggaggaa ctcgctgcag ttaaagaagt
      961 tctcgaatcc ggttggatca caaccggtcc gaagaatcag gcgcttgagc aagccttttg
     1021 ccagttgacg ggaaatcagc atgccatcgc ggtcagttca gccaccgccg gaatgcatat
     1081 cacgctaatg gcgttggaaa ttggcaaggg cgatgaagtg attacgcctt ccctgacctg
     1141 ggtttcaacc ctcaatatga tttccttgtt gggtgcaacg ccggtaatgg tggatgtcga
     1201 ccgcgatacg ctgatggtca cgcctgaagc gatcgagtca gccattacgc cacgcactaa
     1261 agccatcatt ccggtgcatt atgccggtgc gccagcagat attgacgcca ttcgcgccat
     1321 tggcgaacgt tacggcatcg cagttatcga agatgctgcc catgccgtcg gtacgtatta
     1381 caaagggcga catattggcg caaaaggtac cgctattttt tcatttcatg ccattaaaaa
     1441 tattacctgt gcggaaggtg gcctgattgt aactgataat gaaaaccttg cccgccagct
     1501 acggatgctg aaatttcacg gcctgggtgt cgatgcctat gacagacaaa cctggggccg
     1561 agcaccgcag gctgaagtct taacaccggg ctataagtac aatctgaccg atattaacgc
     1621 cgcaattgcc ctgacacagt tagcaaaatt agagcacctc aacacccgtc ggcgcgaaat
     1681 tgcccagcaa tatcagcaag cactggctgc tctccccttt cagccattaa gccttcccgc
     1741 ctggccgcac gttcacgcct ggcatctgtt tattattcgt gtcgatgaac aacgttgtgg
     1801 tatcagtcgc gatgcgttga tggaagcgtt aaaagaaaga ggcattggta ccgggttaca
     1861 tttccgcgcc gctcacacac aaaaatatta tcgcgagcgt tttcccacgc tgtcgttacc
     1921 gaataccgaa tggaatagcg aacgcatctg ttctttgccg ctgttcccgg atatgactac
     1981 cgccgatgcc gaccgtgtca tcacagccct tcagcaactc gcaggacaat aagccatgtt
     2041 tgaaatccac cctgttaaga aagtctcggt ggttattccc gtttataacg agcaggaaag
     2101 cttaccggaa ttaatcaggc gcaccaccac agcctgtgaa tcgttgggga aagagtatga
     2161 gatcctgctg attgatgacg gcagtagcga taattccgcg catatgctgg tcgaagcctc
     2221 acaagcggag aacagccata ttgtgtctat tttgcttaac cgcaattacg ggcaacattc
     2281 agcgattatg gcgggattca gtcacgttac tggcgactta attattaccc ttgatgccga
     2341 tctccagaat ccgccagaag aaatcccccg cctagtggca aaagccgatg aaggttacga
     2401 cgtggtaggg actgtacgcc agaaccgcca ggacagctgg tttcgtaaaa cagcttcgaa
     2461 gatgattaac cggcttattc agcgcaccac cggcaaagcg atgggtgact acggttgtat
     2521 gctgcgcgcc tatcgccgtc atattgtcga tgcgatgttg cactgccatg aacgtagcac
     2581 ctttatcccg attctggcga atatcttcgc ccgccgtgcc attgaaattc cagtacatca
     2641 tgccgagcgt gagtttggtg aatccaaata cagttttatg cgcctgatta atttgatgta
     2701 cgacctggtg acctgcctta ccacaacgcc gctacgtatg ctgagtctgc tcggcagcat
     2761 tattgcgatt ggaggtttta gcattgcggt gctgctggtg attttacgcc tgaccttcgg
     2821 accacaatgg gcggcagaag gcgtctttat gctatttgcc gtgctgttta cttttattgg
     2881 cgctcagttt atcggcatgg gattactcgg tgaatatatc ggcaggatct acaccgatgt
     2941 ccgcgcccgc ccccgctatt ttgttcagca agttatccgt ccatccagca aggaaaatga
     3001 ataatgaaaa ccgtcgtttt tgcctaccac gatatgggat gcctcggtat tgaagctctg
     3061 ctggctgccg gttacgaaat tagcgccatt tttacccata ccgataatcc cggtgaaaaa
     3121 gccttttatg gttcggtggc tcatctggcg gcggaaagag gcattccggt ttatgcgccg
     3181 gataacgtta atcatccgct gtgggtggaa cgcattgccc aactgtcacc agaggtgatt
     3241 ttctcttttt attatcgcca tcttatttgc gacgagattt tgcagctcgc tcccgcaggt
     3301 gcatttaatc tgcacggttc gctgttacca aaatatcgtg gtcgcgcgcc gctgaactgg
     3361 gtgctggtga acggtgaaac ggaaacgggc gttacattgc accgaatggt aaaacgtgcc
     3421 gatgctgggg ccattgtggc gcaactgcgc gttgccattg cgccagacga tatcgctatt
     3481 acgctgcatc ataaattgtg ccatgccacg cgccagctac tggaacagac attacccgcc
     3541 attaaacacg gtaatattct ggaaatcgcc cagcgcgaaa acgaagccac ctgttttggt
     3601 cgcagaacgc cggatgacag tttccttgaa tggcataaac cggcatccgt actgcacaac
     3661 atggtacgtg ccgttgccga tccgtggccg ggtgccttca gctatgttgg caatcagaaa
     3721 ttcaccgtct ggtcgtcgcg tgttcatcct catgccagca aagcacagcc ggggagcgtg
     3781 atttctattg caccgctgtt gattgcctgt ggcgatggcg cgctggaaat cgtcaccgga
     3841 caggcgggcg acggcattac tatgcagggc tcgcaattag cgcagacgct gggcctggtg
     3901 caaggttcac gcttgaatag ccagcctgcc tgcaccgccc gacgccgtac ccgggtactc
     3961 atcctcgggg tgaatggctt tattggcaac catctgacag aacgcctgct gcgcgaagat
     4021 cattatgaag tttacggtct ggatattggc agcgatgcga taagccgttt tctgaatcat
     4081 ccgcattttc actttgttga aggcgatatc agtattcatt ccgaatggat tgagtatcat
     4141 gtcaaaaaat gtgatgtcgt cttgccgctg gtggcgatag ccacgccgat tgaatatacc
     4201 cgcaacccgc tgcgcgtatt tgaactcgat tttgaagaga atctgcgcat tatccgctac
     4261 tgcgtgaagt accgtaagcg aatcatcttc ccgtcaactt cagaagttta tgggatgtgt
     4321 agcgataaat acttcgatga ggaccattct aatttaatcg tcggcccggt gaataaacca
     4381 cgctggattt attcggtatc aaaacaatta cttgatcggg tgatctgggc ctatggcgaa
     4441 aaagagggtt tacagttcac cctcttccgc ccgtttaact ggatgggacc acgactggat
     4501 aaccttaatg cggcacgaat cggcagctcc cgcgctatta cgcaactcat tctcaatctg
     4561 gtagaaggtt caccgattaa gctgattgat ggcggaaaac aaaaacgctg ctttactgat
     4621 attcgcgatg gtatcgaggc gttataccgc attatcgaaa atgcgggaaa tcgctgcgac
     4681 ggtgaaatta tcaacattgg caatcctgag aacgaagcga gcattgagga actgggcgag
     4741 atgctgctgg cgagcttcga aaaacatccg ctgcgccatc atttcccacc gtttgcgggc
     4801 tttcgcgttg tcgaaagtag cagctactac ggcaaaggat atcaggacgt agagcatcgt
     4861 aaaccgagca tccgcaatgc ccaccgctgc ctggactggg agccgaaaat tgatatgcag
     4921 gaaaccatcg acgaaacgct ggatttcttc ctgcgcaccg ttgatcttac ggataaacca
     4981 tcatgaccaa agtaggctta cgcattgatg tcgatacctt tcgtggcacc cgtgaaggcg
     5041 tgccgcgtct gctggaaatc ttgagtaagc ataatattca ggccagcatt tttttcagcg
     5101 tcggcccgga caatatgggc cgccatctct ggcgactggt gaagccacag tttttgtgga
     5161 agatgctgcg ctcaaacgcg gcatcgcttt atggctggga tattttactg gcaggtacgg
     5221 cctggccagg taaagagatt ggtcatgcca atgccgatat cattcgtgaa gcggctaaac
     5281 atcacgaagt cggcctgcac gcctgggatc accatgcctg gcaagcccgt agcggtaact
     5341 gggatcggca aacaatgatc gacgatattg cacgcggtct tcgcactctg gaagagatta
     5401 tcggtcaacc ggtaacctgt tctgccgctg cgggctggcg tgccgaccag aaggtgatcg
     5461 aagcaaaaga agcgttccat ttgcgctaca acagcgattg tcgtggggcc atgccgttcc
     5521 gtccattgct cgaatcagga aaccctggca ctgcgcaaat tccggtgacc ttacccacct
     5581 gggatgaagt gattggtcgg gatgtgaaaa cagaagattt taacggttgg ttactcaacc
     5641 gcatcctgcg agataaaggc acgccggttt ataccattca tgcagaagtt gaaggctgcg
     5701 cttatcagca taattttgtg gatctcctca aacgcgcagc tcaggaaggc gtgacatttt
     5761 gccctttaag cgaactgtta tcagagacgt tgccgctcgg acaagttgtt cgcggaaata
     5821 ttgccggacg tgaaggctgg ctgggttgcc aacaaattgc gggtagtcgc tgatgaaatc
     5881 ggtacgttac cttatcggcc tcttcgcgtt tattgcctgc tattacctgt taccgatcag
     5941 cacgcgtctg ctctggcaac ccgatgaaac gcgttatgcg gaaatcagtc gagaaatgct
     6001 ggcatccggc gactggattg tgccccatct gttagggcta cgttatttcg aaaaacccat
     6061 tgccggatac tggattaaca gcattgggca atggctattt ggcgcgaata actttggtgt
     6121 gcgggcaggc gttatctttg cgaccctgtt aactgccgcg ctggtgacct ggtttactct
     6181 gcgcttatgg cgcgataaac gtctggctct actcgccaca gtaatttatc tctcattgtt
     6241 tattgtctat gccatcggca cttatgccgt gctcgatccg tttattgcat tctggctggt
     6301 ggcgggaatg tgcagcttct ggctggcaat gcaggcacag acgtggaaag gcaaaagcgc
     6361 aggattttta ctgctgggaa tcacctgcgg catgggggtg atgaccaaag gttttctcgc
     6421 ccttgccgtg ccggtattaa gcgtgctgcc atgggtagcg acgcaaaaac gctggaaaga
     6481 tctctttatt tacggctggc tggcggttat cagttgcgta ctgacggttc tcccttgggg
     6541 actggcgata gcgcagcggg agcctgactt ctggcactat tttttctggg ttgagcatat
     6601 tcaacgcttt gcactggatg atgcccaaca tagagctccg ttctggtact acgtgccggt
     6661 catcattgcc ggtagcctgc cgtggctggg attactcccc ggtgcactgt acacaggctg
     6721 gaaaaaccgc aagcattccg caaccgtcta tttgttgagc tggacgataa tgccgctgct
     6781 gtttttctcc gtcgctaaag gtaaattgcc cacctatatt ctttcctgct ttgcatctct
     6841 ggcaatgctg atggcgcatt acgctttgct ggcagcaaaa aataatcctc tggcgctgcg
     6901 gattaatggc tggattaaca tcgcttttgg cgtcactggc attattgcca catttgtggt
     6961 ctccccgtgg ggaccaatga acacgccggt gtggcaaacc ttcgagagct ataaagtctt
     7021 ttgtgcctgg tcgatttttt cgctatgggc atttttcggc tggtacacct taacaaacgt
     7081 cgaaaagacc tggtctttcg ccgcgctttg cccgctgggg ctggcgttgc tggtaggatt
     7141 ttcaattcct gacagagtca tggaaggaaa acatccgcaa ttttttgtcg agatgacaca
     7201 agaatcactt caaccaagcc gctatattct tactgatagc gtcggtgttg ccgcaggtct
     7261 ggcatggagc ctgcaacgcg atgacatcat catgtatcgc cagacaggtg agttgaaata
     7321 cggccttaat tatccggatg cgaaagggag atttgtcagc ggtgatgagt tcgcaaactg
     7381 gcttaatcaa catcgtcagg aggggattat tacactcgtg ctttcggttg accgcgatga
     7441 agatatcaac agtctcgcca ttccgcccgc agatgccatc gatcgtcagg agcgtctggt
     7501 gctgattcag tatcgtccca aatgatctgg ctaacattag tctttgccag cttgcttagc
     7561 gttgccgggc agttgtgtca gaaacaggca acctgctttg tggcgataaa caaacggcgc
     7621 aaacatatcg tgctgtggct gggactggcg ctggcttgtc ttggtcttgc catggtgctc
     7681 tggctgctgg tcttgcagaa cgtaccggta ggcattgcct acccgatgtt aagtctgaat
     7741 tttgtctggg tgacgctggc tgcagtaaaa ctgtggcacg aaccggtatc gccgcgtcac
     7801 tggtgtgggg tggcgttcat tattggtggc attgtgatcc tcgggagtac ggtgtaatgg
     7861 gcctgatatg gggattattc agcgtcatta ttgcctcagt tgcgcaatta agcctgggtt
     7921 ttgcggcaag tcatctgccg ccgatgacgc acttatggga ttttatcgcg gctctgttag
     7981 cttttggcct ggatgcccgg atactgttac tcgggctgct gggttatctg ctttccgttt
     8041 tttgttggta taaaacgcta cataaacttg cgctaagcaa agcctatgcc ttgctcagta
     8101 tgagttatgt gctggtatgg attgcttcaa tggtacttcc cggctgggaa gggacttttt
     8161 cgctgaaagc actactggga gtagcctgta ttatgagcgg gttgatgctg attttcctgc
     8221 ccacgacaaa acaacgttac tgagttttcc ctgccgctgt acactgccgt tcccactcat
     8281 cggggctata actgcttgcc gagaggactt tcaccgtatg cagcttttca cgattaatac
     8341 aataaagcgc attctgcaaa ggcgagagta aatcccccac tttcacggcg aagtcactct
     8401 tcacttcggc gatcattttt atcgcgccgc cagcatcgca gagcataagt acatgtctgt
     8461 tatcttgttt attgcagcac gattttttga ccagccattc cattgcatta tcctgtttgc
     8521 taagagtttt cacatcaatt tacagattaa cagataaact ctttatcaac ggcaatggaa
     8581 tggcagaaat gagaagtgaa acggagggtt aattattgct gacgttgcac ccactctttt
     8641 agcgcctgac gtgaaatttt aataccgccg tttttcagct ccggcggtaa agtcagccag
     8701 cgcaccggtt gttgaaaacg agccagctta tctttcaccc attcgccaag atcaacggtt
     8761 tgctggtcat actccaccac cgctaccggc cgatgaccaa actccttgtc ggcaacggga
     8821 acgataaaca cctgcaaaac cgcaggatgt gcagcaataa cacgctcgac ttcttccggc
     8881 tgaataccct caccgccact gaataacaga ttgtctaaac gtccgacaat ggtcagcttg
     8941 ccattatgca tctcaccgcg atcgcgcgta gcgtaccagc cttcgtcatt aaccagtgaa
     9001 accagttgcc cgttacgcca gtaaccttct gccatactgg cagcccgcag ccacacttca
     9061 ttattaacga ttttcacttc ccgacccggc agcggcgaac caacgtctgc caggccgtcg
     9121 gcttctttcg cacataccgt ggaggcaaac tcggtcagac catagccgca aaagcaacga
     9181 atcccctgct cgcgcgcctg ttccgtcaac tcgaccggga tagccgcgcc gccaagtaac
     9241 accgctttca gggaaacgga actgcggtta accagcaaac gccagagttg tgttggcacc
     9301 agtgaagcgt gagtacagcc tgccagcatt tgctccaatg gctgtttatc acgcaccgtc
     9361 atccgcgcac cagcgtataa ccagcgccac ataattccct gaccggagac gtgaaacagc
     9421 ggtaaagaga gcaaccagtc atcgtgatcg ccaaacggaa tcagcgataa cacaccttgc
     9481 gcactggcaa gatgggcctg ataagtatgg acagcggctt tcggtaaacc ggtggagccg
     9541 gaggtcaatg tcattgaaca aagacgtgtt ggttgccaca gagctgaatg tgtgccttca
     9601 accatctgaa tatgcagtga agttaacgcc gggaaagtat tttctccttc cagcaccagc
     9661 gcatattgca gtgtaagatt tggcagtaat tcctcaagca acggttgcgg aagctgtgga
     9721 tttacgggca gcacccgcgc cccgcattgc agtaacgcca gccaggcgag cagcgtttgc
     9781 ggcgtattcc acgcccgcaa catcacgccg ctgccctcaa ccacaccctg cgccgcaaag
     9841 cccgtagcta actcatcgac gcgagcacaa agctcgcgcc agttgagttg ctcgtcatta
     9901 agacgtaagg cgatggcttc tccccgcact tgccgccagt gacgccacgg ccagtcagag
     9961 aagatcataa caaccgctcc agtgcatcaa cttccacgac aggcagcgtg ctacccggcc
    10021 agcgacgtac ctgctgcgcc tgcatcagat ccagcgtgtc cagccctgga atggtgtccg
    10081 gcgttaacca ggcggcaatc cgcgccagtt gcgttaagcc taagctcgac tcaatagaag
    10141 aactgatcac cgccgtcagc ctcaacgcgt gcgccgcctg tacctgctcg cgtacttttt
    10201 ccagactgcc cgtgagcgtg ggtttgataa ctaccgcgcg cacgccctct tcagccacaa
    10261 aggcaaaatc cggctcgcgc aggctttcat cccaggcaat ggcaatgccg gtttcacggg
    10321 caaacgctcg cgaatcatcg cgggttttgc acggctcttc gagaaacgcg atgcggtggc
    10381 gataatccgg gttaacatat ttggcaaact gctgaccttt cagcggtgtc caggcgcgat
    10441 ttgcgtcaag acgcaaatgc agatccggaa ttgcctccag caacagatta accaccatgc
    10501 cgtcgcgcac ggcttcgtac aatcccactt tgaccttcgc cactttctcg cctggcatat
    10561 cagcaagttt gaggatcaga tcgtcaggat cgccattaca cagtggtgcc gcacggtaat
    10621 tggccgcctg cgggagcgta tctgccagct ccgccaatgc acagcttacg ccaaaggcaa
    10681 tggaaggcat ctgcagtagc tcgcaatcgc ctgccagcca gttatttacc caggcaagca
    10741 gcacgctttg cgcctcttcc caggtttcct ggctgaagcc cggcagtggg gagatctccc
    10801 cccacccttc gcgctcgccc tcacgcaggc aaacgtacag cccgtcgcgg gtttttaacc
    10861 gcctgtcgcg cagaaccacc cccgcgtcca tggggatctg ccagcggtat acctgcgcgc
    10921 tacgcattac ggattccgtt taaatttgct gaaatcaggc tgacgtttct ggttgaaagc
    10981 gttgcgacct tcctgacctt cttccgtcat gtagaacagc atggtggcgt tgcccgccag
    11041 ctcctgcagc cccgcctgcc cgtcacagtc ggcgttcagt gcagctttca ggcagcgcag
    11101 cgccatcgga ctgttttgca gcatttcgcg gcaccagcga acggtctctt tttccagatc
    11161 cgccagcggt accacggtgt tgacaaggcc catatccagc gcctgtttcg cgtcgtactg
    11221 acggcacagg aaccagattt cccgcgcttt tttctgtccg acgatgcgag ccatgtagga
    11281 agcgccccag ccgccgtcga aggaaccgac tttcgggcca gtctgaccga agatggcatt
    11341 atctgccgcg atagtcaggt cgcacatcat gtgcagaacg tgaccgccgc cgatggagta
    11401 gccagccacc atcgcgacaa ccggtttcgg acaggtacgg atctgacgct ggaagtccag
    11461 cacgttcagg tgatgtacgc cggaatcatc tttatagccg ccgtaatcac cacgcacttt
    11521 ctggtcaccg ccggagcaga acgctttatc acctgcgcca gtcagaatga tcacgccgac
    11581 gttgtcgtca taacgcgcat ctgccagtgc ctggatcatc tcttttaccg tcagaggacg
    11641 gaaggcattg cgcacctgcg gacgattaat ggtgattttt gcgataccat cggtggattt
    11701 ttcataacga atgtcctcga aaccttcgga gcagtcgtgc cattcaaccg gtgcgtaaag
    11761 cattgcttca tcaggataaa tcatattgtg tcctttagtc agaaacgcaa gatctgcgcc
    11821 agacttgcga ttacgccagc gggattttcc cgatgcgcgt tatgtccgac gcgaggaatg
    11881 acatggcagt cggcagccag ttccgccgcc agggcgcgga atttgctgtc acgttcacca
    11941 cataaataat aaaacgcaaa tgtgcgggcg ctaaggttag cacgtaaatc aggctggacg
    12001 gcgagagaag tcgcctccag catggcggca agggttgcgc cattattgtt gctgcgcagc
    12061 gccaccagct cccggcgttg atcgtcattg agcgaggcaa aaacaggctg ttgataccag
    12121 tcggcaaata ccgccgttaa cggttctgtg cgaaaacgct gcgcccattg gcgatcggaa
    12181 cgctgacgtt ccgcacgttg ttcagcattt tgcagccccg gatgcccgcc ttcgacaata
    12241 accccacaaa gccccgccag cccctggcaa gccgccatca tcgccacccg tccgccaagc
    12301 gagtacccca ccagccagaa gtcaaggatg ttgtaactaa ccaaggtttt acgcagtaag
    12361 tcggtgacct catcaaatcc atcgacgcta atcgccgccg aaccaccatg acctgggaga
    12421 tcaacataca accgtgagta gtcggcaaac gcctcgccca cttcttgcca ttcgtggcaa
    12481 tcgccggaaa aaccgtgcaa aaacaccagc cagggtaaac ctggttttcc gtgttttgcc
    12541 tgcgcgtgca ggatcataaa tggcttacct gcgccagaag ttgctggagc gtttgcgcac
    12601 catcggtgtc gttaaccacc atttcaatca ccgtggtggt tggcgtgcgc caggcgtcgg
    12661 caaatgccgt ttcaagttcc tgccagtttt gcggacgatg atatttcagc tcgaacatcg
    12721 cggcggcgtg ctcaaaatgg acgttttgcg gcatcagata gaaacgctca cgctcgcttt
    12781 gcggcgttgg caacagcgag aaaatttgcc cgccgttgtt gttcaccaca attaatacca
    12841 gcggcgcaga aacctgacgc aataacgcca gcgcgttgag atcgtaaagt gcggagagat
    12901 cgcccacaat cgccagcgtc ggtttgccgc ttgcccgctg aacgcctgcg gcggtcgaaa
    12961 gcagtccgtc gataccgctg gcccctcggt tgctgtacac cgggtaacct gccggaagtt
    13021 gcgaaagcgc atcaatcaga cgtaccacca ggctgttacc gacaaacaat tgcccctgtt
    13081 caggcagata gtcgctgatg cgatgcgcca gttgcgcttc gccaaacgca tcgcgacggg
    13141 caataaccgc ctgcattgcc tgttccgcca ggcgcgggat ttcaacgcac cagggctggc
    13201 gtttttctgc cggatgcagc tccagccagt cggcaatatt ggcaattaag cggcgtccac
    13261 gatggtgcgc cggatcaagc cgcccttcga tgtcatccac aatccagtac tcttcgggtt
    13321 cacagcttgc ctgccattgc aggagccgtt tgcccgtcag gctgcttccc agttgcacca
    13381 caatttgcgc ctgctgcagc tcgctggtcg ctttggcatt gcctaaccaa agatcggcac
    13441 acggcagcgg ctgcccggtt tgtgacagca catcgccaat cagcggccag ccaagagttt
    13501 gcgcccacag ggcaactttt ttgccctctt ccgcactcat gcgcccggca accaccacgc
    13561 cgcgcttttg tcgccagaag aaccagtcgc gctgtttttc actttccaga ctaggcgctt
    13621 cacgcagcca cggtttgtcg tcctgccacc agtcacccag acgctgttgc cagctaagcc
    13681 cggtatcgtc catttcgcca tacagcggtt cagcaaacgg gcagttgata tggactcccc
    13741 ccgcatgaag cgtaccgaga gcgtggtcga tggtagaaac cagccaacgt gcggggatat
    13801 cctgggtcgg gcgcggcaat gaaatactgt gcgtggggtg agaggcgaac attcccggct
    13861 ggcgaattgc ctgattcgcg ccgcagtcaa ttagctccgg cgggcgatcg gcggttaaga
    13921 gaatcagttt ttctccggtt aacccggctt caatcagtgc cggatagaga tttgccaccg
    13981 cagtgccgga ggtcacaatc accgccaccg gctgcttgct gactttcgcc agccccagcg
    14041 ccagatgccc caccccacgc tcatcgaaat gggtgtggtg aatgaatgcg gaattctccg
    14101 ccgccgctaa cgttaacggt gtagaacgcg agcctggggc gatacagatg tgtctgacgc
    14161 cgtgacgcgt taatgcttcc agaatgaccg ccgcccagcg tcggttaaat gcgcttactg
    14221 acatgagttt gtccggtatc aatattgcgg ctaagtataa ggagctacaa aaatagatta
    14281 ttgatatgaa tcggtaatga tgcgactcat tactattcca tttgtaataa agtacgcaac
    14341 cctgccgctt tgttgtcgat ttcctgccac tcttgctcgg ggtcggaacc acggacaatg
    14401 cccgcgccag catataatcg cacgacattg ccgctaattt ttgctgagcg cagggaaacg
    14461 cagaattcgc tttgttgtaa tgagagatag cccgcagaac cggcgtacca ttctcgggtg
    14521 aacggttcgt gacgggcgat aaactgtcgc gccagatcgc gcggtaagcc agcaactgct
    14581 gccgttggct gcaactgatg taaacagatc acatcatccg ctttgttgag tgaagtccag
    14641 atacagcggc gaagatgctg cactttacgc agacgcagta cctgcggcgg taaaacatcc
    14701 agcgtctggg tatcggcctg taatcgttgg cagatatctt ccaccaccag catgttctcg
    14761 cgctggtttt tatcatccgc catcagccac tcttctaact gctgcgcctg cttatcatca
    14821 ggatgatttg ctactgttcc cgccagcgct tcagtacgca gcgctttgtc acgccgccgc
    14881 cataaccgtt ccggtgaaga gccaagaaaa gcattttcgc catcaaaggc catgtaaaaa
    14941 tggtagcaat tcagattcag tcgacgactg gcagccatca tcgccgccgc gttgaccgga
    15001 cttgcgaaat gcaggtcagt tgcccgagcg agcaccactt tgtcgagctc accttcggcg
    15061 atggttttcg ttgccagttc gattaattgc gtccagcccg ttttgtccgg ccagtgttgt
    15121 tctcgcgtgg tggttaaatg taacccaggc aagggcttga tactcaccag tgtggcgata
    15181 aattcttttg cctgaatcgc atcgtgctga agggagcttt cgctgaatag cgtcagccgc
    15241 agcgtggctt taccgccaca gcgtcgccat tccaggcggg gtaaaagtaa attgccctgc
    15301 gacgggtcaa aagcattcag cccccaaatg cgtaagtcgg cgtgttccgg gtgctggcga
    15361 agaaaacgtt gtgcctggtc caacgacgta aaacgggtaa tcgcgcccag gacggcagct
    15421 tcttcatcac cattacgttg ttgccagtag aattgcgggt acgtttgctg actggccagc
    15481 cagctcaagg catcaaaagc gtctttgaga gggaaaggaa tatcgataac ccgaatgccg
    15541 ggtgtcgccg gaatctcttg cgacaaatgg cgcagtagat tttccagcgc cgtagtaagt
    15601 gattgcacgc ggacctctcc ctgttaaaag cctcacatta tacggggtac tacaaaaaaa
    15661 atgcagtacc ccggtgtagg gaggttttaa cggcgtgcca gcaacagtcc tagtaccagc
    15721 ccaacggccg cgcccacacc aattccttgc caaggttttt cgtggacgta gtcatcagca
    15781 cgataaacag cctgcttcgc ccgatagtaa taactgtctg aaacctggct aacccgtttt
    15841 ttcacatcat ccagcgcttt ttctgcacgc gctttcagct caacatattt ctgatcagcg
    15901 ggatcgccag aggagcggag cacctcttcc agtgtctcac taagcagcgt caggtcgtca
    15961 tcgatacgtg tatcaccaaa ctgattagac attctcgttc tccatttgcg taaaacctgt
    16021 cactaactat agacaagggt tgttgattac gcctgaatta cctcgcgtgc catcccaatg
    16081 tgtgggatac catcttcttc atagacctcc gtcacaggga taaaaccgaa actctggtag
    16141 aagttttgca gatgcgcctg cgccccgagg taaacaggct tatcaggcca gtgatgcgtg
    16201 caggtgtcga gggttttact catcagttgc tgccccactt tttcgccacg caacgcttca
    16261 ctgacaatca cccgaccaat aacgaccggc tcaagatcat catcactttt cagaatcctc
    16321 gcatatgcca ccagttcatc atttttccaa ccgagaatat ggcgattatc ccccgtcaaa
    16381 tcatcaccat cgatatcctg ataagggcaa ttctgctcga caacaaacac cgcgcaacgc
    16441 agttgtaata aggcataaag ctgggaaacc gataattcag agtgatgcag atcttgccat
    16501 tcaatcataa tgctctcctt ttagatgtat accttatact agccggaata ttttttgaaa
    16561 cgtgatgaac tcatggaatt aattttttta ggtacttcag ccggtgtgcc aacccgcacg
    16621 cgcaatgtca cggcaatatt gcttaacctg caacatccga cccagagcgg actttggttg
    16681 tttgactgcg gtgaaggcac ccagcatcag ctactgcata ccgcctttaa ccctggaaaa
    16741 ctggacaaga tttttatcag tcaccttcat ggcgatcatc tttttggttt acccggcttg
    16801 ctgtgcagtc gttctatgtc aggcattatc caacccttaa cgatttatgg tccgcaaggt
    16861 atccgtgaat ttgtggaaac cgcgctgcgg attagcggct catggaccga ttatccgctg
    16921 gaaattgtcg aaattggcgc tggcgaaatt ctcgatgatg gcctgcgcaa agtaaccgct
    16981 tatccgctgg aacacccact ggaatgttat ggctatcgta ttgaagaaca tgataaaccg
    17041 ggtgcattaa atgcccaggc attaaaagct gctggcgtgc cgcctggccc actgtttcag
    17101 gaattaaaag cgggcaaaac aatcacgctg gaagatggaa ggcagattaa cggcgcagat
    17161 tacttagctg ctccagtgcc aggtaaagcg ctcgctattt tcggcgatac cggcccctgc
    17221 gatgccgcac ttgacctggc taaaggtgtc gatgtcatgg tgcacgaagc gacgctggat
    17281 ataaccatgg aagccaaagc caatagtcgc ggccatagct ctacacgcca ggctgcgaca
    17341 ctagcccgtg aggctggagt cggtaagcta atcattaccc acgtcagctc gcgctatgat
    17401 gacaaaggtt gtcagcacct gttacgtgaa tgcaggtcaa ttttcccggc gactgaacta
    17461 gcgaatgatt tcaccgtgtt taacgtttaa ctctg
//
LOCUS       DAJVSY010000084        17487 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.084, whole genome shotgun sequence.
ACCESSION   DAJVSY010000084 DAJVSY010000000
VERSION     DAJVSY010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17487)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17487)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17487
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.084"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(38..2635)
                     /gene="topA"
                     /locus_tag="OQQ19_002499"
     CDS             complement(38..2635)
                     /gene="topA"
                     /locus_tag="OQQ19_002499"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HCS1804086.1"
                     /translation="MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAA
                     KKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEK
                     ADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQAFNKPGELNID
                     RVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEE
                     FWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPT
                     TSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNM
                     VRGYISDNFGKKYLPESPNQYASKENSQEAHEAIRPSDVNVMAESLKDMEADAQKLYQ
                     LIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRIL
                     PAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRG
                     YVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDH
                     FFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCPTCGRKMGIRTASTGVFLGCSGYAL
                     PPKERCKTTINLVPENEVLNVLEGEDAETNALRAKRRCPKCGTAMDSYLIDPKRKLHV
                     CGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNEECKNTR
                     KILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVFLAANTFPKSRETRAPLVE
                     ELYRFRDRLPEKLRYLADAPQQDPEGNKTMVRFSRKTKQQYVSSEKDGKATGWSAFYV
                     DGKWVEGKK"
     gene            3015..3266
                     /locus_tag="OQQ19_002500"
     CDS             3015..3266
                     /locus_tag="OQQ19_002500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciN family protein"
                     /protein_id="HCS1804087.1"
                     /translation="MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLV
                     FTGDYFLDEQGLPTAKSTAVFNMFKHLAHVLSEKYHLVD"
     gene            complement(3302..4351)
                     /gene="sohB"
                     /locus_tag="OQQ19_002501"
     CDS             complement(3302..4351)
                     /gene="sohB"
                     /locus_tag="OQQ19_002501"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HCS1804088.1"
                     /translation="MELLSEYGLFLAKIVTVVLAIAAIAAIIVNVAQRNKRQRGELRV
                     NNLSEQYKEMKEELAAALMGSHQQKQWHKAQKKKHKQEAKAAKAKAKLGEVATDSKPR
                     VWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYGLAASQLQR
                     LRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKY
                     IDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMRPSLDIEQVAT
                     GEHWYGQQAVEKGLVDEINTSDEVILSLMEGREVVNVRYMQCKRLIDRFTGSAAESAD
                     RLLLRWWQRGQKPLM"
     gene            4571..5329
                     /locus_tag="OQQ19_002502"
     CDS             4571..5329
                     /locus_tag="OQQ19_002502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciK family oxidoreductase"
                     /protein_id="HCS1804089.1"
                     /translation="MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGR
                     NEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIVVNYPRLDGVLHNAGL
                     LGDICPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA
                     NWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPA
                     DIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGISQ"
     gene            5326..5917
                     /gene="cobO"
                     /locus_tag="OQQ19_002503"
                     /pseudo
     CDS             5326..5917
                     /gene="cobO"
                     /locus_tag="OQQ19_002503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415786.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
     gene            complement(5957..6829)
                     /gene="rluB"
                     /locus_tag="OQQ19_002504"
     CDS             complement(5957..6829)
                     /gene="rluB"
                     /locus_tag="OQQ19_002504"
                     /EC_number="5.4.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2605) synthase RluB"
                     /protein_id="HCS1804090.1"
                     /translation="MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEV
                     TPGLKIRIDGHLISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR
                     WIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGV
                     QLEDGPAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDI
                     PLPKGLPRGGWTELDLAQTNYLRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHS
                     QVSGGRRSGGRNNG"
     gene            complement(7040..8935)
                     /locus_tag="OQQ19_002505"
     CDS             complement(7040..8935)
                     /locus_tag="OQQ19_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2207 domain-containing protein"
                     /protein_id="HCS1804091.1"
                     /translation="MAGKFRCILLLIAGLFVSSLSYAENPEIPSYEEGISLFDVEATL
                     QPDGVLDIKENIHFQARNQQIKHGFYRDLPRLWMQPDGDAALLNYHIVGVTRDGIPEP
                     WHLDWHIGLMSIVVGDKQRFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPF
                     EIYKTRFSLKFPDIAGNPFSEIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVL
                     YRWPHALLSNAPAPQTTNIFSHLLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVD
                     VIETDVIPPDYTPGMLRLDAKLVYDDKGFCADIVNLIVKGKIHLEDQYDKNQQILICV
                     NEGATRNNEVLLPAEQLLLEALFRKGDKVVLTGRRNRVLRRAFLRMQKFYLPRKKSLF
                     YRPDTFLQWGGLAILAIILYGNLSPVGWAGMSLVGDMFIMICWIIPFLFCSLELLFAR
                     DDDKPCVNRAIITLFLPLICSGVAFYSLYINVGDVFFYWYMPAGYFSAVCLTGYLTGM
                     GYIFLPKFTQTGQQRYARGEAIVNYLARKEAATHSGRRRKGETRKLDYALLGWAISAN
                     LGREWALRIAPSLSSAIRAPEIARNGVLFSLQTHLSCGANTSLLGRSYSGGGAGGGAG
                     GGGGGGW"
     gene            complement(8963..9583)
                     /locus_tag="OQQ19_002506"
     CDS             complement(8963..9583)
                     /locus_tag="OQQ19_002506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HCS1804092.1"
                     /translation="MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKI
                     EDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILK
                     GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEI
                     KDRLEKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL"
     gene            complement(9580..10461)
                     /gene="yciV"
                     /locus_tag="OQQ19_002507"
     CDS             complement(9580..10461)
                     /gene="yciV"
                     /locus_tag="OQQ19_002507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exoribonuclease"
                     /protein_id="HCS1804093.1"
                     /translation="MSDTNYAVIYDLHSHTTASDGCLTPEALVHRAVEMRVGTLAITD
                     HDTTAAIAPAREEISRSGLALNLIPGVEISTVWENHEIHIVGLNIDITHPLMCEFLAQ
                     QTERRNQRAQQIAERLEKAQIPGALEGAQRLAQGGAVTRGHFARFLVECGKASSMADV
                     FKKYLARGKTGYVPPQWCTIEQAIDVIHHSGGKAVLAHPGRYNLSAKWLKRLVAHFAE
                     HHGDAMEVAQCQQSPNERTQLTTLARQHHLWASQGSDFHQPCPWIELGRKLWLPAGVE
                     GVWQLWEQPQNTTEREL"
     gene            10599..10643
                     /gene="trpL"
                     /locus_tag="OQQ19_002508"
     CDS             10599..10643
                     /gene="trpL"
                     /locus_tag="OQQ19_002508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon leader peptide"
                     /protein_id="HCS1804094.1"
                     /translation="MKAIFVLKAWWRTS"
     misc_feature    10620..10713
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00513"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Trp leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00513"
     gene            10735..12297
                     /gene="trpE"
                     /locus_tag="OQQ19_002509"
     CDS             10735..12297
                     /gene="trpE"
                     /locus_tag="OQQ19_002509"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HCS1804095.1"
                     /translation="MQTQKPTLELLTCEGAYRDNPTALFHQLCGDRPATLLLESADID
                     SKDDLKSLLLVDSALRITALGDTVTIQALSGNGEALLTLLDNALPAGVENEQSPNCRV
                     LRFPPVSPLLDEDARLCSLSVFDAFRLLQNLLNVPKEEREAMFFGGLFSYDLVAGFED
                     LPQLSAENNCPDFCFYLAETLMVIDHQKKNTRIQASLFAPNEEEKQRLTARLNDLRQQ
                     LTEAAPPLPVVSVPHMRCECNQSDEEFGGVVRLLQKAIRTGEIFQVVPSRRFSLPCPS
                     PLAAYYVLKKSNPSPYMFFMQDNDFTLFGASPESSLKYDATSRQIEIYPIAGTRPRGR
                     RADGSLDRDLDSRIELEMRTDHKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDR
                     YSYVMHLVSRVVGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIAEAEGRRRGSYG
                     GAVGYFTAHGDLDTCIVIRSALVENGIATVQAGAGIVLDSVPQSEADETRNKARAVLR
                     AIATAHHAQETF"
     gene            12297..13892
                     /gene="trpD"
                     /locus_tag="OQQ19_002510"
     CDS             12297..13892
                     /gene="trpD"
                     /locus_tag="OQQ19_002510"
                     /EC_number="2.4.2.18"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional anthranilate synthase glutamate
                     amidotransferase component TrpG/anthranilate
                     phosphoribosyltransferase TrpD"
                     /protein_id="HCS1804096.1"
                     /translation="MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERL
                     ATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG
                     EILHGKASSIEHDGQAMFAGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHD
                     ADRVCGFQFHPESILTTQGARLLEQTLAWAQRKLEPTNTLQPILEKLYQAQTLSQQES
                     HQLFSAVVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADI
                     VGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNAD
                     KSRQALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGV
                     YSPELVLPIAETLRVLGYQRAAVVHSGGMDEVSLHAPTIVAELHDGEIKSYQLTAEDF
                     GLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRLHGHEDLQANA
                     QTVLEVLRSGSAYDRVTALAARG"
     gene            13893..15254
                     /gene="trpCF"
                     /locus_tag="OQQ19_002511"
     CDS             13893..15254
                     /gene="trpCF"
                     /locus_tag="OQQ19_002511"
                     /EC_number="4.1.1.48"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional indole-3-glycerol-phosphate
                     synthase TrpC/phosphoribosylanthranilate isomerase TrpF"
                     /protein_id="HCS1804097.1"
                     /translation="MMQTVLAKIVADKAIWVETRKQQQPLASFQNEVQPSTRHFYDAL
                     QGARTAFILECKKASPSKGVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFDFLP
                     IVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMG
                     GLTEVSNEEELERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGI
                     NTYAQVRELSHFANGFLIGSALMAHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDAG
                     AIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQL
                     HGNEDQLYIDTLREALPTHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDW
                     SLLNGQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQPGIKDARLLASVFQTL
                     RAY"
     gene            15266..16459
                     /gene="trpB"
                     /locus_tag="OQQ19_002512"
     CDS             15266..16459
                     /gene="trpB"
                     /locus_tag="OQQ19_002512"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HCS1804098.1"
                     /translation="MTTLLNPYFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQ
                     FNDLLKNYAGRPTALTKCQNITAGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMG
                     KTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVH
                     SGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVCEFQRMIGEETKAQILE
                     REGRLPDAVIACVGGGSNAIGMFADFINETNVGLIGVEPGGHGIETGEHGAPLKHGRV
                     GIYFGMKAPMMQTEDGQIEESYSISAGLDFPSVGPQHAYLNSTGRADYVSITDDEALE
                     AFKTLCLHEGIIPALESSHALAHALKMMRETPEKEQLLVVNLSGRGDKDIFTVHDILK
                     ARGEI"
     gene            16459..17265
                     /gene="trpA"
                     /locus_tag="OQQ19_002513"
     CDS             16459..17265
                     /gene="trpA"
                     /locus_tag="OQQ19_002513"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HCS1804099.1"
                     /translation="MERYESLFAQLKERKEGAFVPFVTLRDPGIEQSLKIIDTLIEAG
                     ADALELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMY
                     ANLVFNKGIDEFYAQCEKVGVDSVLVADVPVEESAPFRQAALRHNVAPIFICPPNADD
                     DLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPD
                     QVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKVFVQPMKAATRS"
BASE COUNT         4222 a         4673 c         4346 g         4246 t
ORIGIN      
        1 cgaccctttg tttataaaaa cctgacagaa ttaaaggtta tttttttcct tcaacccatt
       61 tgccatcaac ataaaatgct gaccagccag tcgcctttcc gtctttttcc gaagagacat
      121 attgctgttt ggttttacgg ctaaagcgaa ccatggtctt attaccttcc ggatcctgct
      181 gtggcgcatc ggccagataa cgcagttttt ccggcagacg gtcgcggaag cgataaagct
      241 cttccaccag tggcgcacgc gtttcacgcg atttcgggaa agtgttggca gccaggaaaa
      301 cacccgcagc gccgtcacgc agcacgaaat aagcatctga tttttcgcac ggcagctcag
      361 gtaatggcac cggatcttct ttcggtggtg ccacttcgcc gttacgtaaa atcttacgtg
      421 tgtttttaca ctcttcgttg gtgcaggcca tgtatttacc gaaacgcccc attttcaggt
      481 gcatttcaga gccacatttt tcacactcaa cgatcgggcc gtcataacct ttaatgcgga
      541 attcgccctc ttcgatctcg taaccgtcgc aggttgggtt attaccacag acatgcaact
      601 tacgtttcgg atcgatgaga tagctgtcca tcgccgtgcc gcatttcggg caacgacgtt
      661 ttgcgcgcag cgcgttggtt tcagcgtctt cgccttccag tacgttcagc acttcgtttt
      721 ccggcaccag gttaatggtg gttttgcaac gctctttcgg cggcagcgca taaccagaac
      781 agccaaggaa taccccggtg ctcgctgtgc gaatccccat tttgcgacca caagtcgggc
      841 agtcaatgct ggtcagaacc atctggttcg ggcgcatacc accctcttcc ggatcttttt
      901 cagctttatc taactgctgg gtgaaatccg agaagaagtg atccagtaca gctttccact
      961 ctgcttcgtg atttgccacc tggtcgaggc tgttttccat ctgtgcggtg aagtcgtagt
     1021 tcattaactc gcggaaattt tcttcaaggc gatcggtgac gatttcgccc attttttccg
     1081 catagaaacg acgattttct actcgcacgt agccacgatc ctgaatggtc gaaatgatcg
     1141 acgcataggt agacggacga ccgataccgc gtttttccag ctctttaacc agcgatgctt
     1201 cactgaaacg ggctggcggc ttggtaaagt gctgggctgg tgtaagttca acgagcgtca
     1261 gagcatcgcc tttattaact gctggtaaga tgcgatcttc atcgccttta cgcaacgcag
     1321 gcatcacttt tgtccagcca tcaaaacgca aaatacgacc gcgtgctttc aggcggaaat
     1381 cgcccgcacc aacggtcagc gtcgtggagt catatttcgc tggggtcatc tggcaggcta
     1441 cgaactgacg ccagattaac tggtacagtt tctgcgcatc tgcttccata tccttcagcg
     1501 attccgccat cacattgacg tcagaaggac gaatcgcttc gtgcgcttcc tgtgagtttt
     1561 ctttgctggc gtactgattc ggactttccg gcagatattt cttaccaaaa ttatcgctga
     1621 tataaccgcg aaccatattt accgcgtcct gactcaggtt agtggagtcg gtacgcatgt
     1681 aagtgatata gcctgcttca tacaaacgct gcgccatcat catggttttt ttcacgccaa
     1741 atccaagacg ggtgctggca gcttgttgca gcgtagaggt aataaaagga gcgccaggtt
     1801 tactggttgt cggtttgtct tcacgttcca gcacgctgta gcgcgctttt tccagcagac
     1861 ttaccgcagc ctgagtttgt tctttgttga ccggacggaa cggtttgtcg ttctgatgag
     1921 tcacctgtaa cgccaacgct tcaccagatg gcgtggtcgt gctggcatcg acttcccaga
     1981 actcttccgg cacgaacgct ttaatttcac gctcacgctc gaccaccagg cgaaccgcca
     2041 ccgactgcac acgaccggca gacagaccac gagcgatctt tttccatagc agcggcgaaa
     2101 ccatataccc caccacgcgg tccataaagc gacgcgcctg ctgggcatta acacgatcaa
     2161 tattcagctc acccggtttg ttaaatgcct ggcggatcgc gtttttagta atttcgttaa
     2221 acaccactcg gctatagcgc gcatcatcac ccccaatcac ttcccgcagg tgccatgcaa
     2281 tggcttcccc ttcgcggtca aggtcggttg cgagatagat gtggtcggct ttttcagcca
     2341 gttgtttcag ttcagagacg accttctctt taccaggcaa cacttcatag tgcgcctccc
     2401 aattgtgcca cgggtcaacc cccatacggt tgacgagagc gccacgttca tcctttttag
     2461 gctttttagc cgtcttggtg gaggtagagt cggcactctt tttggcagct gagccactgg
     2521 tcggcaaatc gcggatgtga ccgacgctgg atttcaccac gtagtcacta cccagatact
     2581 tgttgatcgt tttggctttt gccggggact caacgatgac aagagcttta cccatattca
     2641 ccttacctaa tttgattctt ccaggaatgc gtcgcacgtt gataaacctt ccactggcaa
     2701 cgagttaccg atatggactc gttctctgcg gatatcaacc ccttgtcgtg actctgttca
     2761 cgaaaattca ggtgactgag ttaacaggtc ttggcctaca ggcgctatag cacgacggaa
     2821 ttttggtcga atgtcaagca aatctattgc cagattgacg aaagcgtcac actgtacctg
     2881 ataaaatccg atacgcaact ttattagcat gcaaaatcca aagttgccag taaggcgctc
     2941 ttgccaccag cgtggtatat ttgtctgcaa gccatgcctg gcgtagacta atgtccttat
     3001 ttaaggagta aataatgaac aaagagacac aacccatcga ccgcgaaacg ctgttgaaag
     3061 aggccaacaa aatcattcgt gagcatgagg atacgctcgc agggattgaa gccaccggcg
     3121 tcacgcagcg taatggcgtg ctggtattta ccggcgacta ctttttagat gaacaaggat
     3181 tgccaacagc caaaagcacc gcggtgttta atatgttcaa acacctggcc catgtgcttt
     3241 cagaaaaata tcatctggtt gattaaagca aaacgcgagg tcttagcctc gcgtttgtct
     3301 tttacatcaa tggcttttga ccccgctgcc accagcgtag caacaatcga tcggcgctct
     3361 ctgccgcgct gccggtgaat cggtcaatga gtcgtttaca ctgcatatag cgtacattaa
     3421 ccacttcacg gccttccatc aggctaagaa taacttcatc actggtgttg atttcatcaa
     3481 ccaggccttt ctctaccgcc tgttgtccgt accagtgttc acctgttgcc acctgttcaa
     3541 tatccagaga cggacgcata cgcttcacaa aatctttaaa caactgatgc gtttcgttca
     3601 actcttcgcg gaatttctcc cgcccttctt cggtattttc acccagcaac gtcagagtac
     3661 gcttatactg cccggcagtg tgcagttcga tatcaatata tttgcttttc aggaagcggt
     3721 taaagttggg catttgcgcc accaccccaa tggaacccac aatagcaaac ggtgcggaaa
     3781 caattttgtc cgccacacag gccatcatgt aaccgccgct ggcagcgact ttgtctaccg
     3841 taacagttaa aggaatgttt ttatcacgca gacgctgcag ctgcgaagcc gccaacccgt
     3901 aaccatgcac catgccacca gggctttcca gacggagcac aacctgatcc tgcggtttga
     3961 atgctgcgag taccgccgtt atctcttcac gtagcgagtt cacttcatgg gcgtccatgc
     4021 tgcctttaaa atccagcacc cagacgcgag gtttactgtc agttgccacc tcgcccagtt
     4081 tggctttcgc ttttgctgct ttcgcttctt gcttgtgctt tttcttctgc gctttgtgcc
     4141 actgtttttg ctgatgtgag cccatcagcg ccgcggccag ttcttctttc atctccttat
     4201 actgttcgct gagattgttg acccgtaact cgccacgctg gcgtttatta cgttgagcaa
     4261 cattgacaat aatggcggca atcgccgcaa tcgctagcac aacggtaacg attttcgcca
     4321 aaaacaaacc atattcagac aacaattcca cgagtcccca ccttggttaa acaacgcttt
     4381 ggctcacagt ttacaacagg catgttaagc cgtctcgcag agatgttatt gcagcgaaag
     4441 tatgacaaag tatccatttt gcggtgttat cgccccaggc tgattgaaat gcccttctgt
     4501 ttcaggcata aagccccaaa gtcataaagt acactggcag cgcgacagac aacgtcgttg
     4561 aggagtagcc atgcattacc agccaaaaca agatttactc aatgatcgca ttatcctggt
     4621 gacgggagcc agcgatggga ttggtcgtga agccgcgatg acgtatgcac gctatggtgc
     4681 gacagtgatt ctgttgggcc gtaatgaaga aaaattacgt caggtagcca gccacataaa
     4741 cgaagaaact gggcgtcagc cacagtggtt tattctcgat ttgctgacct gcacgtccga
     4801 aaattgccaa caactggcac agcgcattgt cgttaattat ccgcgtctgg atggtgtttt
     4861 gcataatgcc ggattgctcg gcgatatttg cccaatgagc gaacaaaatc cgcaggtctg
     4921 gcaggacgtc atgcaggtca acgttaatgc cacctttatg ctcacccagg cactgcttcc
     4981 tttattactc aaatcggacg ccggttcact ggtctttact tcatcaagcg ttggacgtca
     5041 gggacgagct aactggggtg catatgcagc gtcgaaattt gccaccgaag ggatgatgca
     5101 ggtactggcc gatgaatatc agcagcgcct gcgcgtcaac tgcattaacc caggcggtac
     5161 gcgcaccgca atgcgcgcaa gcgccttccc gaccgaagat ccacagaaac ttaaaacacc
     5221 cgctgatatc atgccgctct acctctggct gatgggcgat gacagccgcc gtaaaaccgg
     5281 catgaccttt gacgcccaac cgggccgtaa accaggaatt tcccaatgag tgatgaacgc
     5341 taccaacagc gtcagcagcg agtgaaagaa aaagtagatg ctcgtgtggc acaggcccca
     5401 ggatgaacgc ggtattatca tcgtctttac cggcaatgga aaaggcaaaa ccaccgcggc
     5461 atttggtacg gcaacacgcg cagttggtca cggaaaaaaa gtgggcgtcg tgcagtttat
     5521 taaaggcacc tggcctaatg gcgaacgcaa tctgctggaa ccacatggcg ttgagtttca
     5581 ggtgatggca acgggcttta cctgggatac acaaaaccgc gagtctgata ccgccgcctg
     5641 ccgcgaagtc tggcaacatg caaagcggat gcttgctgat tcctcactgg atatggtttt
     5701 gcttgatgaa ctgacgtata tggtggcgta tgactatttg ccactggaag aagtggtgca
     5761 ggcgttaaat gaacgtccac atcaacagac ggtgattatc acgggtcgag gctgtcatcg
     5821 ggatattctt gaactggcgg atacggtaag tgagctgcgc cccatcaaac atgcgtttga
     5881 tgccggtgtt aaggcgcaaa tagggattga ttattaatct gtaaaaatgc cggatatgac
     5941 gtccggcata ctttgattaa ccgttattac gcccgccaga acgacgaccg ccgctcacct
     6001 gactgtgacg tttcaccgca cgacgaatct gattagcctt catgcgacga cggtcttttt
     6061 ctacagcgac tttagagctg gtttctggcg gaagctccac cagttcgcgc agatagttag
     6121 tctgggcgag gtccagctcc gtccagccac cgcgtggcag accttttggc agtgggatat
     6181 caccgtaacg aacacggatc aggcggctca cctgcacacc aaccgcttcc cacagacgac
     6241 gaacttcacg gttacggcct tcggtcagag tcacgttgta ccactggttg atcccttcgc
     6301 cgccgctgaa cttgatggtt ttaaaagctg ccggaccatc ttccagttgc acgccacgac
     6361 tcaaatcacg cagtttcgcg tcgtcaacct gaccaaatac acgcacggcg tattcacgtt
     6421 caacttcacg gcttggatgc attaaacggt ttgccagttc accatcggtg gtgaacagca
     6481 gcagaccaca ggtgttaacg tccagacgac ctacggcaat ccagcgtgcg ccacgcagct
     6541 ttggcagacg gtcaaacacc gtcggacgcc cttccggatc gttacgggta cacaactcac
     6601 cttccggttt gtaataggcc agaacgcgac aaatttgttc agcggactca cgtaccgaaa
     6661 tcagatgacc atcgatacga attttcagcc caggggtaac ttcaacgcga tcgccgagtt
     6721 tagcaatttt gccatcaaca ctcacacgac cggcttcaat aatagattcg atttcacggc
     6781 gggagccgtg gccagcgcgg gccagcactt tctgtaattt ttcgctcata gagcttcctt
     6841 ttggtgtcgc cttcccaggc gtctgatatg cttttgtgca acagtgagtc agaacttaca
     6901 tctgactcac tgatagtaaa gtctgtttga actcttcagg ccttaagtaa acgactcgac
     6961 gtttatcggc ctggctttga ggcgcaacat actacactat ctttatggtt aaagcttgtt
     7021 tcgattaaca tcagcttaat taccagccac caccgcctcc gccacccgcg ccgccgccag
     7081 caccaccacc ggaataactt cgccccaaca aactggtatt ggccccgcaa cttaggtgcg
     7141 tctgtaatga gaataaaacg ccgttacggg caatctctgg agcgcgaatc gccgaagaaa
     7201 gcgaaggggc aatgcgtaac gcccattccc tccccaaatt tgccgatata gcccaaccta
     7261 gcaacgcgta atccagtttc cgtgtttccc ctttccgccg acgtccactg tgtgttgctg
     7321 cctctttacg cgcaagatag ttaacgatag cttcaccgcg ggcataacgt tgctgcccag
     7381 tttgggtaaa ctttggcaga aaaatatacc ccatgccagt gagataaccg gtcaggcaaa
     7441 cagcgctaaa ataacccgct ggcatatacc agtaaaagaa tacatctccg acattgatat
     7501 agagagaata gaaggccacg cctgaacaaa tcagtggtaa aaacaaagtg atgattgcac
     7561 gattaacgca aggcttgtca tcatcgcggg caaacaaaag ctcaagggaa caaaataaaa
     7621 aaggaataat ccagcagatc ataataaaca tatcgcctac cagactcatt cctgcccaac
     7681 ctacgggact caggttaccg tagagaatga tcgccaatat tgccagtcca ccccattgca
     7741 aaaacgtatc aggccggtaa aacaaagact ttttacgcgg cagataaaat ttctgcatcc
     7801 gtaaaaatgc cctgcgtaag actctgttgc gtctccccgt aagaacgacc ttatcgcctt
     7861 tacgaaataa cgcttccagt aataactgct ctgcgggcag taatacctca ttatttctgg
     7921 tcgcgccttc attaacacaa atcaggattt gctggttctt atcatactga tcttccagat
     7981 gaatttttcc cttcacgatc agatttacga tatcggcaca gaaaccttta tcgtcgtaaa
     8041 ccagcttcgc atcgagacgt aacatgccgg gcgtgtaatc tggcggaatg acatcggttt
     8101 caatcacatc taccggcgta aattgcggcc tgcgcttcca gagatataac catccacaaa
     8161 ccaggaataa acacggaaac caaattaaca acgatgacgt ggagggtaaa agaagatggc
     8221 tgaaaatatt cgtcgtttgt ggagccgggg cattgctaag taacgcgtga ggccagcggt
     8281 agagtaccgt gaaatcttca cgataaaacg gatcgcggga ttcaattctt ccgtcctcaa
     8341 ggatgcggcc atttcgatat gtgtcgccct cttctccagt aaagagatcg atttcgctaa
     8401 atggattacc cgcgatatca gggaacttga gtgaaaatcg ggtcttatag atttcaaacg
     8461 gccagtggtt accagtcacg ttccagatta acagatctga atctccctca cgcaggaaag
     8521 catttttaac ctgataatga atttgataat gatagtcgcc ttgaggcaag aaacgttgtt
     8581 tatcgcccac gacaatactc attaacccga tatgccagtc aagatgccag ggttcaggaa
     8641 taccatcacg agtgacgcca acaatatgat agttcagcag tgcagcgtcc ccatcaggct
     8701 gcatccagag tcgtggtaaa tcacgataaa atccgtgctt aatctgctga tttcgcgcct
     8761 gaaaatgaat attttctttg atgtcgagca ccccatccgg ttgcagagtg gcttcaacat
     8821 caaagagcga gatcccttct tcataagaag ggatctccgg gttttctgca taacttagag
     8881 atgatacaaa cagccctgct atcaacagca aaatgcagcg aaacttccct gccatagtct
     8941 tccatccgtg gaacgcaatt tgttataaga aaggcttcac atcacccacg ccttcacgca
     9001 ccacgaccgg cgtatcatcg gtaagatcaa tgaccgttgt cggtttctgt ccgagatagc
     9061 cgccgtggat aatcaaatcc acctgttttt ccagacggtc tttaatttct tctggatcgg
     9121 attcggtaaa ttcgctgcct ggcagcatta gcgaagtgga aagcatcggt tcgcccagtg
     9181 cttcaagcaa cgcctgcgca atcgggttag aaggcacacg cataccgatg gttttgcgtt
     9241 tttcctgcaa cagacggcgt ggcacctcct tcgtcccctt caggatgaag gtatagttgc
     9301 ccggcgtgtt gtttttcatt aaacgaaacg caacgttatc cacgaatgaa taggtcgaaa
     9361 gttcagaaag atcgcgacac atcagggtaa agttgtgacc gtccggcagc tggcgaatac
     9421 gacaaatacg ctccatcgcg tttttatctt caattttaca gccgagcgca tagccggaat
     9481 cagttggata aacaatcacc ccgcctttac gcacgatctc caccgcctgg ttgatcagac
     9541 gttgctgcgg gttatcagga tgaatataaa aaaactggct cataattccc tctctgtggt
     9601 gttctgcggc tgttcccata gctgccagac gccttcaacg cctgcgggca gccagagttt
     9661 acgacccagt tcgatccacg ggcatggctg atgaaaatca gatccttgtg atgcccataa
     9721 atgatgctga cgcgcaagtg tcgtcaactg ggtgcgttca ttgggcgatt gctggcactg
     9781 cgcgacttcc atcgcgtcgc cgtggtgttc ggcaaaatgc gcaaccaatc ttttcagcca
     9841 tttagcacta agattgtacc gcccaggatg agctagcacc gccttaccgc cagaatgatg
     9901 aatgacatca atagcttgtt ctattgtaca ccactgtggc ggaacgtatc cggttttccc
     9961 gcgcgccaga tactttttaa agacatctgc cattgaactg gctttgccgc actcaacaag
    10021 gaaacgcgca aaatgaccgc gcgtcactgc gccgccctgc gccagtcgtt gtgcgccttc
    10081 cagcgcccca ggtatttgcg ctttttcaag tctttcggca atttgctgcg cccgctgatt
    10141 gcgccgttct gtctgctgcg cgaggaactc acacattagc ggatgagtaa tatcaatatt
    10201 cagcccgaca atatgaattt catgattttc ccagaccgtg gaaatttcca cgccgggaat
    10261 aagattcagc gccagtcccg aacgtgaaat ttcctctctt gctggcgcga ttgcagctgt
    10321 ggtgtcatgg tcggtgatcg ccagggtgcc gacgcgcatc tcgactgcac ggtgcaccaa
    10381 tgcttctggc gtcaggcagc catcggaagc tgtggtatgg ctgtgcaggt cgtaaatcac
    10441 tgcgtaattc gtgtcgctca aggcgcactc ccgttctgga taatgttttt tgcgccgaca
    10501 tcataacggt tctggcaaat attctgaaat cagctgttga caattaatca tcgaactagt
    10561 taactagttc gcaagttcac gtaaaaaggg tatcgacaat gaaagcaatt ttcgtactga
    10621 aagcttggtg gcgcacttcc tgaaacgggc agtgtattca ccatgcgtaa agcaatcaga
    10681 tacccagccc gcctaatgag cgggcttttt tttgaacaaa attagagaat aacaatgcaa
    10741 acacaaaaac cgactctcga actgctaacc tgcgaaggcg cttatcgcga caacccgact
    10801 gcgctttttc accagttgtg tggggatcgt ccggcaacgc tgctgctgga atccgcagat
    10861 atcgacagca aagatgattt aaaaagcctg ctactggtag acagtgcgct gcgcattaca
    10921 gcattaggtg acactgtcac aattcaggca ctttccggca acggcgaagc cctgctgaca
    10981 ctactggata acgccctgcc tgcgggtgtg gaaaatgaac aatcaccaaa ctgccgtgtg
    11041 ctgcgcttcc cccctgtcag tccactgctg gatgaagacg ctcgcttatg ctccctttcg
    11101 gtttttgacg ctttccgttt attgcagaat ctgttgaatg taccgaagga agaacgagaa
    11161 gcaatgttct tcggcggcct gttctcttat gaccttgtgg cgggatttga agatttaccg
    11221 caactgtcag cggaaaataa ctgccctgat ttctgttttt atctcgctga aacgctgatg
    11281 gtgattgacc atcagaaaaa aaacacccgc attcaggcca gcctgtttgc tccgaatgaa
    11341 gaagaaaaac aacgtctcac tgctcgcctg aacgatcttc gccagcagct gaccgaagcc
    11401 gcgccgccgc tgccggtggt ttccgtgccg catatgcgtt gtgaatgtaa ccagagcgat
    11461 gaagagttcg gtggcgtggt gcgtttgttg caaaaagcga ttcgcaccgg agaaattttc
    11521 caggtggtgc cgtctcgccg tttctctctg ccctgcccgt caccgctggc ggcctattac
    11581 gtgctgaaaa agagtaatcc cagcccgtac atgtttttta tgcaggataa tgatttcacc
    11641 ctgtttggcg cgtcgccgga aagttcgctc aagtatgacg ccaccagccg ccagattgag
    11701 atctacccga ttgccggaac acgcccgcgc ggtcgtcgcg ccgatggttc actggacaga
    11761 gacctcgaca gccgcatcga actggaaatg cgtaccgatc ataaagagct ttctgaacat
    11821 ctgatgctgg tggatctcgc ccgtaatgat ctggcacgca tttgcacccc cggcagccgc
    11881 tacgtcgccg atcttaccaa agttgaccgt tactcttacg tgatgcacct ggtctcccgc
    11941 gtggtcggtg agctgcgcca cgatctcgac gccctgcacg cttaccgcgc ctgtatgaat
    12001 atggggacgt taagcggtgc gccgaaagta cgcgccatgc agttaattgc cgaggcggaa
    12061 ggtcgtcgcc gcggcagcta cggcggcgcg gtaggttatt tcaccgcgca tggcgatctc
    12121 gacacctgca ttgtgatccg ctcggcgctg gtggaaaacg gtatcgccac cgtgcaagcc
    12181 ggtgctggca tagtccttga ttctgttccg cagtcggaag ccgacgaaac ccgtaataaa
    12241 gcccgcgctg tactgcgcgc tattgccacc gcgcatcatg cacaggagac tttctgatgg
    12301 ctgacattct gctgctcgat aatatcgact cttttacgta caacctggca gatcagttgc
    12361 gcagcaatgg gcataatgtg gtgatttacc gcaaccatat tccggcgcag accttaattg
    12421 aacgcctggc gacgatgagc aatccggtgc tgatgctttc tcctggcccc ggtgtgccga
    12481 gcgaagccgg ttgtatgccg gaactcctca cccgcttgcg tggcaagctg cccattattg
    12541 gcatttgcct cggacatcag gcgattgtcg aagcttacgg gggctatgtc ggtcaggcgg
    12601 gcgaaattct ccacggtaaa gcctccagca ttgaacacga cggtcaggcg atgtttgccg
    12661 gattaacaaa cccgctgcca gtggcgcgtt atcactcgct ggttggcagt aacattccgg
    12721 ccggtttaac catcaacgcc cattttaatg gcatggtgat ggcagtacgt cacgatgcgg
    12781 atcgcgtttg tggattccag ttccatccgg aatccattct tactacccag ggcgctcgcc
    12841 tgctggaaca aacgctggcc tgggcgcagc ggaaactaga gccaaccaac acgctgcaac
    12901 cgattctgga aaaactgtat caggcgcaga cgcttagcca gcaagaaagc caccagctgt
    12961 tttcagcagt ggtacgtggc gaactgaaac cggaacaact ggcggcggcg ctggtgagca
    13021 tgaaaattcg cggcgagcac ccgaacgaga tcgccggagc agcaaccgcg ttactggaaa
    13081 acgccgcgcc gttcccgcgc ccggattatc tgtttgccga tatcgtcggc accggtggtg
    13141 acggcagtaa cagcatcaat atttccaccg ccagtgcgtt tgtcgccgcg gcctgtgggc
    13201 tgaaagtggc gaaacacggc aaccgtagcg tctccagtaa atctggttcg tccgatctgc
    13261 tggcggcgtt cggtattaat cttgatatga atgccgataa atcgcgccaa gcgctggatg
    13321 agttaggcgt atgtttcctc tttgcgccga aatatcacac cggatttcgc catgcgatgc
    13381 cggttcgcca gcaactgaaa acccgcactc tgttcaacgt gctgggacca ttgattaacc
    13441 cggcgcatcc gccgctggcg ttaattggtg tttatagtcc ggaactggtg ctgccgattg
    13501 ccgaaacctt gcgcgtgctg gggtatcaac gcgcggcggt agtgcacagc ggcggtatgg
    13561 atgaagtttc attacacgcg ccgacaatcg ttgccgaact gcatgacggt gaaattaaga
    13621 gctatcagct aactgcagaa gattttggcc tgacacccta ccaccaggag caactggcag
    13681 gcggaacacc ggaagaaaac cgtgacattt taacacgctt gttacaaggt aaaggcgacg
    13741 ccgctcacga agcagccgtc gcggcgaatg tcgccatgtt aatgcgcctg catggccatg
    13801 aagatctgca agccaatgcg caaaccgttc ttgaggtact gcgcagtggt tccgcttacg
    13861 acagagttac cgcactggcg gcacgagggt aaatgatgca aaccgtttta gcgaaaatcg
    13921 tcgcagacaa ggcgatttgg gtagaaaccc gcaaacagca gcaaccgctg gccagttttc
    13981 agaatgaggt tcagccgagc acgcgacatt tttatgatgc gctacagggt gcacgcacgg
    14041 cgtttattct ggagtgcaag aaagcgtcgc cgtcaaaagg cgtgatccgt gatgatttcg
    14101 atccggcacg cattgccgcc atttataaac attacgcttc ggcaatttcg gtgctgactg
    14161 atgagaaata ttttcagggg agctttgatt tcctccccat cgtcagccaa atcgccccgc
    14221 agccgatttt atgtaaagac ttcattatcg acccttacca gatctatctg gcgcgctatt
    14281 accaggccga tgcctgctta ttaatgcttt cagtactgga tgacgaccaa tatcgccagc
    14341 ttgcagccgt cgctcacagt ctggagatgg gggggctgac cgaagtcagt aatgaagagg
    14401 aactggagcg cgccattgca ttaggggcaa aggtcgttgg catcaacaac cgcgatctgc
    14461 gtgatttgtc gattgatctc aaccgtaccc gcgagcttgc gccgaaactg gggcacaacg
    14521 taacggtaat cagcgaatcc ggcatcaata cttacgctca ggtgcgcgag ttaagccact
    14581 tcgctaacgg ttttctgatt ggttcggcgt tgatggccca tgacgatttg cacgccgccg
    14641 tgcgccgggt gttgctgggt gagaataaag tatgtggcct gacgcgtggg caagatgcta
    14701 aagcagctta tgacgcgggc gcgatttacg gtgggttgat ttttgtcgcg acatcaccgc
    14761 gttgcgtcaa cgttgaacag gcgcaggaag tgatggctgc ggcaccgttg cagtatgttg
    14821 gcgtgttccg caatcacgat attgccgatg tggtggacaa agctaaggtg ttatcgctgg
    14881 cggcagtgca actgcatggt aatgaagatc agctgtatat cgatacgctg cgtgaagctc
    14941 tgccaacaca tgttgccatc tggaaagcat taagcgtcgg tgaaaccctg cccgcccgcg
    15001 agtttcagca cgttgataaa tatgttttag acaacggcca gggtggaagc gggcaacgtt
    15061 ttgactggtc actattaaat ggtcaatcgc ttggcaacgt tctgctggcg gggggcttag
    15121 gcgcagataa ctgcgtggaa gcggcacaaa ccggctgcgc cggacttgat tttaattctg
    15181 ctgtagagtc gcaaccgggc atcaaagacg cacgtctttt ggcctcggtt ttccagacgc
    15241 tgcgcgcata ttaaggaaag gaacaatgac aacattactt aacccctatt ttggtgagtt
    15301 tggcggcatg tacgtgccac aaatcctgat gcctgctctg cgccagctgg aagaagcttt
    15361 tgtcagcgcg caaaaagatc ctgaatttca ggctcagttc aacgacctgc tgaaaaacta
    15421 tgccgggcgt ccaaccgcgc tgaccaaatg ccagaacatt acggctggga cgaacaccac
    15481 gctgtatctg aagcgcgaag atttgctgca cggcggcgcg cataaaacta accaggtgct
    15541 cggtcaggct ttactggcga agcggatggg taaaaccgaa atcatcgccg aaaccggtgc
    15601 cggtcagcat ggcgtggcgt cggcccttgc cagcgccctg ctcggcctga aatgccgtat
    15661 ttatatgggt gccaaagacg ttgaacgcca gtcgcctaac gtttttcgta tgcgcttaat
    15721 gggtgcggaa gtgatcccgg tacatagcgg ttccgcgacg ctgaaagatg cctgtaacga
    15781 ggcgctgcgc gactggtccg gcagttatga aaccgcgcac tatatgctgg gcaccgcagc
    15841 tggcccacat ccttatccga ccattgtgtg tgagtttcag cggatgattg gcgaagaaac
    15901 gaaagcgcag attctggaaa gagaaggtcg cctgccggat gccgttatcg cctgtgttgg
    15961 cggcggttcg aatgccatcg gcatgtttgc agatttcatc aacgaaacca acgtcggcct
    16021 gattggtgtg gagccgggtg gtcacggtat cgaaactggc gagcacggcg caccgctaaa
    16081 acatggtcgc gtgggcattt atttcggtat gaaagcgccg atgatgcaaa ccgaagacgg
    16141 gcagattgaa gaatcttact ccatctccgc cggactggat ttcccgtctg tcggcccaca
    16201 acacgcgtat cttaacagca ctggacgcgc tgattacgtg tctattaccg atgatgaagc
    16261 ccttgaagcc ttcaaaacgc tgtgcctgca cgaagggatt atcccggcgc tggagtcttc
    16321 ccacgccctg gcccatgcgc tgaaaatgat gcgcgaaacc ccggaaaaag agcagctact
    16381 ggtggttaac ctttccggtc gcggcgataa agacatcttc accgttcacg atattttgaa
    16441 agcacgaggg gaaatctgat ggaacgctac gaatctctgt ttgcccagtt gaaggagcgc
    16501 aaagaaggcg cattcgttcc tttcgtcacg ctcagggatc cgggcattga gcagtcattg
    16561 aaaattatcg atacgctaat tgaagccggt gctgacgcgc tggagttagg tatccccttc
    16621 tccgacccac tggcggatgg cccgaccatt caaaacgcca ctctgcgcgc ctttgcggca
    16681 ggtgtgactc cggcacaatg ttttgaaatg ctggcactga ttcgccagaa acacccgacc
    16741 attcccattg gcctgttgat gtatgccaat ctggtgttta acaaaggcat tgatgagttt
    16801 tatgcccagt gcgagaaagt cggcgtcgat tcggtgctgg ttgccgatgt gccagttgaa
    16861 gagtccgcgc ccttccgcca ggccgcgttg cgccataatg tcgcacctat cttcatctgc
    16921 ccgccaaatg ccgatgacga cctgctgcgc cagatagcct cttacggtcg tggttacacc
    16981 tatttgctgt cacgagcggg cgtgaccggc gcagaaaacc gcgccgcgtt acccctcaat
    17041 catctggttg cgaagctgaa agagtacaac gctgcacctc cattgcaggg gtttggtatt
    17101 tccgccccgg atcaggtaaa agcagcgatt gatgcaggag ctgcgggcgc gatttctggt
    17161 tcggccattg ttaaaatcat cgagcaacat attaatgagc cagagaaaat gctggcggca
    17221 ctgaaagttt ttgtacaacc gatgaaagcg gcgacgcgca gttaatccca cagccgccag
    17281 ttccgttggc ggcattttaa ctttctttaa tgaagccgga aaaatcctaa attcatttaa
    17341 tatttatctt tttaccgctt cgcttacccc tgtcgaacgt caacttacgt catttttccg
    17401 cccaacagta atataatcaa acaaattaat cccgcaacat aacaccagta aaatcaataa
    17461 ttttctctaa gtcacttatt cctcaga
//
LOCUS       DAJVSY010000085        16876 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.085, whole genome shotgun sequence.
ACCESSION   DAJVSY010000085 DAJVSY010000000
VERSION     DAJVSY010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16876
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.085"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            191..2038
                     /gene="ldtD"
                     /locus_tag="OQQ19_002514"
     CDS             191..2038
                     /gene="ldtD"
                     /locus_tag="OQQ19_002514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HCS1804100.1"
                     /translation="MLLNMMCGRRLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAV
                     SEQGEALPQAQATAIMAGIQPLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARD
                     MQPMWENRDAVKAFQQQLAEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGY
                     LHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQYA
                     AMHESLLALLSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGD
                     DTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGL
                     GADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTELSTGIMVNIPAYSLVYYQNG
                     NQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESH
                     GYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYL
                     HDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDAGWNDKRISDALKQGDTRYVNI
                     RQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSSQIVSKAEQLIR"
     gene            2219..2767
                     /locus_tag="OQQ19_002515"
     CDS             2219..2767
                     /locus_tag="OQQ19_002515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbK family protein"
                     /protein_id="HCS1804101.1"
                     /translation="MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNN
                     LHTGESIKAEFFDGRGYIQEELAKLNHFFRDYRANKIKSIDPGLFDQLYRLQGLLGTR
                     KPVQLISGYRSIDTNNELRARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRA
                     GGVGYYPRSNFVHIDTGPARHW"
     gene            2794..3441
                     /gene="gloC"
                     /locus_tag="OQQ19_002516"
     CDS             2794..3441
                     /gene="gloC"
                     /locus_tag="OQQ19_002516"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003035823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase GloC"
                     /protein_id="HCS1804102.1"
                     /translation="MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDD
                     SGLTLMQILLTHGHLDHVGAAAELAQHYGVPVFGPEKEDEFWLQGLPAQSRMFGLEEC
                     QPLTPDRWLNEGDTISIGNVTLQVLHCPGHTPGHVVFFDDRAKLLISGDVIFKGGVGR
                     SDFPRGDHNQLISSIKDKLLPLGDDVTFIPGHGPLSTLGYERLHNPFLQDEMPVW"
     gene            complement(3663..4853)
                     /gene="aspC"
                     /locus_tag="OQQ19_002517"
     CDS             complement(3663..4853)
                     /gene="aspC"
                     /locus_tag="OQQ19_002517"
                     /EC_number="2.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009653304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate transaminase"
                     /protein_id="HCS1804103.1"
                     /translation="MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTP
                     VLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARMAQTPG
                     GTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD
                     ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFA
                     RGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMK
                     AAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA
                     NRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAI
                     VAVL"
     gene            complement(5038..6126)
                     /gene="ompF"
                     /locus_tag="OQQ19_002518"
     CDS             complement(5038..6126)
                     /gene="ompF"
                     /locus_tag="OQQ19_002518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpF"
                     /protein_id="HCS1804104.1"
                     /translation="MMKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHY
                     FSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNK
                     TRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVAT
                     YRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADR
                     TNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKT
                     QDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVD
                     YIINQIDSDNKLGVGSDDTVAVGIVYQF"
     gene            complement(6728..8128)
                     /gene="asnS"
                     /locus_tag="OQQ19_002519"
     CDS             complement(6728..8128)
                     /gene="asnS"
                     /locus_tag="OQQ19_002519"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HCS1804105.1"
                     /translation="MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDG
                     SCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGW
                     VEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWV
                     STPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGET
                     YACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKA
                     VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWG
                     VDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIG
                     GSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQN
                     VRDVIPFPRTPRNASF"
     gene            complement(8297..9499)
                     /gene="pncB"
                     /locus_tag="OQQ19_002520"
     CDS             complement(8297..9499)
                     /gene="pncB"
                     /locus_tag="OQQ19_002520"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706850.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HCS1804106.1"
                     /translation="MTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVHVAAEFRCRGD
                     DLLGIYADAIREQIQAMQHLRLQDDEYQWLSALPFFKADYLNWLREFRFNPEQVTVSN
                     DNGKLDIRLSGPWREVILWEVPLLAVISEMVHRYRSPQADVAQALDTLESKLVDFSAL
                     TAGLDMSRFHLMDFGTRRRFSREVQETIVKRLQQESWFVGTSNYDLARRLSLTPMGTQ
                     AHEWFQAHQQISPDLANSQRAALAAWLEEYPDQLGIALTDCITMDAFLRDFGVEFASR
                     YQGLRHDSGDPVEWGEKAIAHYKKLGIDPQSKTLVFSDNLDLRKAVELYRHFSSRVQL
                     SFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFD
                     LPHIKKAS"
     gene            9765..12377
                     /gene="pepN"
                     /locus_tag="OQQ19_002521"
     CDS             9765..12377
                     /gene="pepN"
                     /locus_tag="OQQ19_002521"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000193787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HCS1804107.1"
                     /translation="MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVR
                     HGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEEGALVISNLPEHFTLKIVNEISPAA
                     NTALEGLYQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKTKYPFLLSNGN
                     RVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRG
                     NLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYV
                     LARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL
                     GSRAVNRINNVRTMRGLQFAEDASPMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIH
                     TLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHFRRWYSQSGTPIVTV
                     KDDYNPETEQYTLTISQRTPATPDQAEKQPLHIPFAIELYDNEGKVISLQKGGHPVNS
                     VLNVTQAEQTFVFDNVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWD
                     AAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDEKIDPALAAEILTLPSVNE
                     MAELFDIIDPIAIAEVREALTRTLATELADELLAIYNANYQSEYRVEHEDIAKRTLRN
                     ACLRFLAFGETHLADVLVSKQFHEANNMTDALAALSAAVAAQLPCRDALMQEYDDKWH
                     QDGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFH
                     AEDGSGYQFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLEN
                     LSGDLYEKITKALA"
     gene            complement(12420..13171)
                     /gene="ssuB"
                     /locus_tag="OQQ19_002522"
                     /pseudo
     CDS             complement(12420..13171)
                     /gene="ssuB"
                     /locus_tag="OQQ19_002522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309043.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonates ABC transporter ATP-binding
                     protein"
     gene            complement(13168..13905)
                     /gene="ssuC"
                     /locus_tag="OQQ19_002523"
                     /pseudo
     CDS             complement(13168..13905)
                     /gene="ssuC"
                     /locus_tag="OQQ19_002523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001714028.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter permease
                     SsuC"
     gene            complement(13970..15115)
                     /gene="ssuD"
                     /locus_tag="OQQ19_002524"
                     /pseudo
     CDS             complement(13970..15115)
                     /gene="ssuD"
                     /locus_tag="OQQ19_002524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706856.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FMNH2-dependent alkanesulfonate monooxygenase"
     gene            complement(15112..16071)
                     /gene="ssuA"
                     /locus_tag="OQQ19_002525"
     CDS             complement(15112..16071)
                     /gene="ssuA"
                     /locus_tag="OQQ19_002525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter
                     substrate-binding protein SsuA"
                     /protein_id="HCS1804108.1"
                     /translation="MRNIIKLALVGLLSVSTIAVAAESSPEALCIGYQKGSIGMVLAK
                     SHQLLEKRYPQSKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVG
                     VEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQP
                     TYLTPADARAAFQQGNVDAWAIWDPYYSAALLQGGMRVLKDGTDLNQTGSFYLAARPY
                     AEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMGLPAPVIASYLDHRPPTTIKP
                     VNAEVAALQQQTADLFYENRLVPKKVDIRQRIWQPTQLEGKQL"
     gene            complement(16064..16639)
                     /gene="ssuE"
                     /locus_tag="OQQ19_002526"
     CDS             complement(16064..16639)
                     /gene="ssuE"
                     /locus_tag="OQQ19_002526"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HCS1804109.1"
                     /translation="MRVITLAGSPRFPSRSSSLLEYAREKLNGLDVEVYHWNLQNFVP
                     EDLLYARFDSPALKTFTEQLQQADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVV
                     LPLATGGTVAHLLAVDYALKPVLSALKAQEILHGVFADDSQVIDYHHRPQFTPNLQTR
                     LDTALETFWQALHRRDVQVPDLLSLRGNAHA"
BASE COUNT         4235 a         4352 c         4292 g         3997 t
ORIGIN      
        1 taacggcgcg cttttcttta aacttcttta cattaggtta tgtaaaaacg tatcggcgtt
       61 tatatactga agataagcct gatgagtaac aggcttgctc gtcatacttt cgtgagtatt
      121 ggcgttgtac aggcaagtcg taaaataaca gcctggctat tcagagtatg ataaaaacag
      181 ggggcaaggg atgttgctta atatgatgtg tggtcgtcgg ctgtcggcaa tcagtttgtg
      241 cctggccgta acattcgctc cactgttcaa tgcgcaggcc gatgagcctg aagtaatccc
      301 tggcgacagc ccggtggctg tcagtgaaca gggcgaggca ctgccgcagg cgcaagccac
      361 ggcaataatg gcggggatcc agccattgcc tgaaggtgcg gcagaaaaag cccgcacgca
      421 aatcgaatct caattacccg caggttacaa gccggtttat cttaaccagc ttcaactgtt
      481 gtatgccgca cgcgatatgc aacccatgtg ggaaaaccgt gatgctgtta aagccttcca
      541 gcaacagctg gcagaggtgg cgattgccgg tttccagccg cagtttaata aatgggtaga
      601 gttactgacc gatcctggtg ttaacgggat ggcacgcgac gtagtgctct ctgatgcgat
      661 gatgggctat ctccatttca ttgcaaatat tccggtcaaa ggcactcgct ggctatatag
      721 cagtaaacct tatgcacttg caacgccgcc gctctcggtg attaaccaat ggcagctggc
      781 gctggataaa ggtcaattgc ctacgtttgt tgcaggactg gcaccgcagc atccgcaata
      841 tgcggcgatg catgaatcgt tactggcctt actcagtgac accaaaccgt ggccccaact
      901 gaccggcaaa gcaacgttgc gcccagggca gtggagtaac gacgtaccgg cgttgcgcga
      961 aatattgcaa cgcacaggca tgttggacgg ggggccgaaa attactctac ctggcgatga
     1021 cacgccaact gacgcggtag tcagcccatc cgctgttact gttgaaacag cagaaactaa
     1081 gccgatggac aagcaaacga cgtctcgtag taaacctgcg cctgccgttc gcgccgccta
     1141 cgataatgaa ctggtggaag ccgttaaacg ttttcaggca tggcaaggat tgggggcaga
     1201 tggtgctatt ggcccggcaa cacgtgactg gttaaacgta acgcccgccc agcgtgctgg
     1261 cgtgttggct ctcaacatcc agcgattgcg cttgctgcca acagagcttt ctaccgggat
     1321 catggttaac attccggcct attcgctggt ctactatcag aacggcaatc aggtgctgga
     1381 ttcgcgagtc attgtcggtc gccccgatcg caaaacgccg atgatgagca gtgcccttaa
     1441 caacgtagtg gtaaacccgc cgtggaacgt acctccaact ctggcacgca aagatattct
     1501 gccaaaagtg cgcaacgatc cgggatatct cgaaagccat ggctatacgg tgatgcgtgg
     1561 ctggaacagc agagaagcga ttgacccatg gcaggttgac tggtctacaa tcacggcctc
     1621 gaatttaccg ttccgcttcc agcaggctcc aggcccacgg aactcgctgg ggcgctataa
     1681 attcaatatg ccgagttcag aggccattta tttgcatgac acgccgaacc acaatctgtt
     1741 caagcgtgat acacgcgcat tgagctcagg ctgtgtacga gtgaataaag cttccgatct
     1801 ggcgaatatg ctgttgcagg atgcaggctg gaatgacaaa cgtatttctg atgcgctgaa
     1861 gcagggtgat acacgttacg tcaatattcg gcagtcgatt ccggtgaatc tctactacct
     1921 gacggccttt gttggtgcag atggtcgtac ccagtatcgt acagatattt acaattatga
     1981 tctgcctgcg cgatccagct cgcaaatcgt atcgaaagcg gaacaattaa tcaggtaaat
     2041 gaagtagttc ggggaaatca gttgtcgtaa taattagcat gattgggggc gattctctgc
     2101 agcccccgtc actgctgggg ttgagtcatc ttgacgtctg ctttacgggc ggttaaggtg
     2161 cctcttgtgc gccagaagtg catataaacg ataacattga cctgtagact tgattatcat
     2221 ggacaaattc gacgctaatc gccgcaaatt gctggcgctt ggtggcgttg cactcggtgc
     2281 cgccatcctg ccgacccctg cgtttgcaac actctctacc ccacgcccgc gcattttgac
     2341 actcaataat cttcataccg gagagtcaat caaagcggag tttttcgatg gcagaggcta
     2401 tattcaggaa gaattggcaa aacttaacca ttttttccgc gattaccgcg cgaacaaaat
     2461 aaagtccatc gacccaggat tattcgacca gttgtatcgc ctgcaagggt tgttaggcac
     2521 gcgcaaaccg gtgcaactca tttccggtta tcgttccatt gataccaaca atgaactacg
     2581 cgcccgcagc cgtggagtag cgaagaaaag ctatcacact aaaggccagg cgatggattt
     2641 ccatattgaa ggtatcgcgt taagcaatat tcgcaaagcc gcgttatcta tgcgcgcagg
     2701 tggtgtagga tattacccac gtagtaactt tgtgcatatt gataccgggc cagcacggca
     2761 ctggtagcaa tcgcttaacg aaacaggggc agtatgaact atcgtattat tccggtcacc
     2821 gcattctccc agaactgttc attaatctgg tgtgaacaaa cccgtctggc cgcactggtc
     2881 gatcctggcg gcgatgcgga aaaaatcaaa caggaagttg atgacagcgg cctgacactg
     2941 atgcagatcc tgctgacgca tggtcatctg gaccacgttg gcgcagcggc ggaactggcg
     3001 caacattacg gcgtgccggt ttttggcccg gaaaaagaag atgagttctg gctgcaaggc
     3061 ttgcctgcgc aaagtcgtat gtttggtctg gaagagtgcc agccgctgac gccagatcgt
     3121 tggctgaacg aaggcgatac catcagcata ggaaatgtga ctttacaggt gttacattgc
     3181 cctgggcata cgccgggtca tgtcgtgttt tttgatgatc gggcaaagct gctgatttct
     3241 ggcgatgtta ttttcaaagg cggagtaggg cgcagtgact tcccgcgtgg cgatcataat
     3301 caactgattt cttcaatcaa agataaattg ctgccactgg gggatgacgt gacatttatt
     3361 ccgggtcacg gaccattatc cacacttggt tatgaacgcc tgcataatcc cttcctgcaa
     3421 gacgaaatgc ccgtctggta aggcacataa aaaagcccgc ttttaatgcg ggcctggatt
     3481 tctggcaaag tgcgctttgt ttatgccgga tgcggcacga gcgccttatc cggcctacaa
     3541 aatcgtgcaa attcaaaata ttgcagggga cgcgtaggcc tgataagcgt agcgcatcag
     3601 gcaatgttgc gtttgtcatc agtctcagcc cgcttttcag cgggcttcat tgtttttaat
     3661 gcttacagca ctgccacaat cgcttcgcac agcggagcca tgttatctgg tgtcatcccg
     3721 gccacattta cgcgaccaga agcaaccgca tatacgccaa actcttcgcg cagacgcagc
     3781 acttgttctt ttgtcaggcc actgaaggag aacatgccgt tctgtttgat gataaagctg
     3841 aagtcgcggt ttgcgccttt ttcctgcagc gtattgacga acaactgacg catacgctga
     3901 atacgctggc gcatatcagt cagctcttgt tcccaaatcg cacgtaacgc atcgttgctc
     3961 aggatggtgg caacaacaga agcgccgtgt gctggtgggt tagagtagtt agcgcgaatc
     4021 gccgctttca tttggctgaa tgcgcgatca acggtttcac tgtcggcagc aaccagagta
     4081 caagcgccaa cacgctcgtt gtacaggcca aagtttttag agtaggaact ggcaacaatc
     4141 agctctttat gcatagccgc gaaagcgcgc agtccttcag catcttcttc cagaccacgg
     4201 gcaaaaccct ggtaagcgaa gtcaaacagc ggtaaccagc ctttctcaac ggagagttgt
     4261 gccagtgtct gccattgttc cagcgtaggg tcgataccgg ttgggttatg gcagcagcca
     4321 tggaacagca ctacgtcgcc agcctgagct tcattcaggc tgttaatcag tgcatcgaag
     4381 tcaagagtgt gattttccgc atcataataa gcgtattcac gaacttccag acctgcagag
     4441 ttaaagacgc tcttatggtt cggccagctt gggttgctca cccacactcg cttaacgctg
     4501 gtattttttg ccaggaaatc ggcagctacg cgtagtgcgc cagtgccccc cggagtctgt
     4561 gccatgcgag cacgtttgtc attgatcagg gcgctacctt taccaaacag cagttcctga
     4621 gtgcagcgac caaattcagg gatgccgtca atgccgaggt aatttttggt ggtttcattt
     4681 tcgagcagat actgttcagc ctttttcacg ctggtcagta ccggggtttt gcccgtctca
     4741 tctttataga caccaatccc gaggttaatt ttgccgggac gttcatcggc acgaaacaga
     4801 tcggccaggc ccagaatcgg gtcggcagga gcggcggtaa tgttctcaaa catgacgagg
     4861 ttccattatg gttacagaag ggaagtccgc tatcagggta acgggagatt tacaaaattc
     4921 caactattac tgatgaaaac gcaggctgtt tttgcaagac gtgagattgc tctggaaggt
     4981 ataaaaaaaa caggaccaaa gtcctgtttt ttcggcattt aacaaagagg tgtgctatta
     5041 gaactggtaa acgataccca cagcaacggt gtcgtctgaa cctacgccca gtttgttatc
     5101 agaatcgatc tggttgatga tgtagtcaac ataggtggac atgtttttgt tgaagtagta
     5161 ggttgcgccc acttcaaagt agttcaccag atcaacatca ccgatacctt ctacgtcttt
     5221 cgctttagat ttggtgtaag cgatggacgg acgcagaccg aaatcgaact ggtattgcgc
     5281 aactaacaga acgtcttgcg ttttgttggc gaagccgctg gtgtttgtaa atttattagt
     5341 gatcggcgta gcgttacggg tttcaccgta gttcgctgcc aggtagatgt tgttcgcgtc
     5401 gtacttcaga ccagtagccc actgttcagc ttttttaccg ttgccaagag gttgagcttc
     5461 ttgcaggttg gtacggtcag ctgcaccata agcaccaacg ataccaaagc cttcgtattc
     5521 gtagctgata gaaccgccaa caccgtcgcc gttagaacgg cgtgcagtgt cacgctcgtt
     5581 tttacccagg tactgaacag cgaagttcag gccatcaacc agaccaaaga agttggagtt
     5641 acgataggta gcaacgccgc caacacgacc aacgaagaag tcatcgctgt atgcagtatc
     5701 accaccaaat tctggcagca tatcggtgta acccagtgca tcataaacca caccgtagtt
     5761 acggccgtaa tcgaaagaac caacgtcagc gtatttaaga cccgcgaatg ccagacgcgt
     5821 tttgttacca gtttgagcgt cagcgccttc agagttgtta ccttggaagt tatattccca
     5881 ctgaccataa ccggtcagat cggaattgat ttgagtttcc cctttaaaac caagacgggc
     5941 ataggtcatg tcgccattgc caccgtaact gttttcaccg ttacccttgg aaaaataatg
     6001 cagaccaaca gctttaccgt acagatctac tttgttgcca tctttgttat agatttctgc
     6061 agcgtttgca gtacctgcta ctaacagagc agggacgatc actgccagaa tattgcgctt
     6121 catcattatt tattaccctc atggtttttt ttatgacacc tgccactgcc gtcaataagt
     6181 tctgtcaata aaaatttacg gaactattga tgagagtttg gtgtctttat gtgtctgcag
     6241 gcatctttcc attcaaacta acgtttcgct accgtgaaag tgctgcaaag ataaagattt
     6301 agtttcaaaa agaaaaaata tgtaaccaaa agtaaaaatt aaggaacttt gtgaacaccg
     6361 tcatatttcc atagaaacgt gatgatattt acagcaattt ttatctattt atatgattta
     6421 cttatattta aattaactaa gcggaaattt tgtttctgat ggaaacttta tcgacctggc
     6481 acaaaatcct ctttcagaca tccagaatgc caaaaaatag tatgaaaatt gtgctatcag
     6541 ctaagaaaaa actaatccgc aataagaata cgggttattt tttgtgcgta aatgttgcaa
     6601 tgtaatattc cgtaacagga tgatcgttat ggcggggttg caaatagatt gcttgactta
     6661 acaaacagat aacttgacag aaaggataaa aaagagccag caggcgctgg ctctttgagg
     6721 aagaaaatca gaagctggcg ttgcgcggag tacgtgggaa cggaatcaca tcacgcacgt
     6781 tttgcacgcc agttacgtaa gcaatcaggc gttcaaaacc aagaccgaaa cctgaatgcg
     6841 gaacagtacc gtagcgacgc agatcgcgat accaccagta atcttcttta ttcaggccca
     6901 tttccagcat acgctcgtcc agaacgtcca gacgttcttc acgctgggag cctccaatga
     6961 tctcaccgat gcccggagcc agaacgtcca tagccgcaac ggttttaccg tcttcgttga
     7021 ggcgcatata gaacgcttta atatctttcg gatagttttt aaccactacc ggtgctttaa
     7081 agtgttcttc cgccagataa cgctcatgct cagaagagag atcgacgccc cagtaaaccg
     7141 ggttttcaaa cttcctgccg cagttttcga gaatggtcac tgcgtcggtg taatccacct
     7201 gcgcgaaatc ggcctcaatg aagcgttcca gacgtgaaac ggcatcttta tctacgcgtt
     7261 cagcgaagaa tttcatgtcg tctgcgcgtt cttcgagaac cgctttgaag acatatttca
     7321 gcatggcttc agccagaccc gcgatatcgt tcaggttagc aaacgccact tccggctcca
     7381 gcatccagaa ttccgccagg tgacggctgg tgttggagtt ttcagcacgg aaagtcgggc
     7441 cgaaggtata aattttggat aatgcgcaag cgtaggtttc gccgttcaac tggccagata
     7501 cggtcaggaa agactcttta ccaaagaagt ctttgtcgaa atccactttg ccctgatcgt
     7561 tacgcggcag gttttccaga tccagcgtag aaacgcggaa catttcgcct gcaccttcgg
     7621 tatcagatgc ggtaatcagt ggcgttgaaa cccagaagaa tccctgctcg ttaaagaagc
     7681 gatgcagcgc ctgcgccagc gtatggcgaa cgcgcgcgac ggcaccaatc aggtttgtgc
     7741 gcggacgcag gtgagcgact tcacgcagat actcaatgct gtggcgtttt gccgccatcg
     7801 ggtaagtgtc tggatcttca acccaaccag caacttcaac tttgctggcc tgaatttcaa
     7861 attgttgccc ctggcccggc gacgccacga ctttacccgt cacaatgacc gagcagccgg
     7921 tggtcagacg caggacgtct tcattgtaat tgggcagaga attattgatg acagcctgta
     7981 caggatcaaa gcaggaaccg tcataaacgg cgaggaagga gatgccagct tttgaatctc
     8041 ggcgggtacg tacccatccg cgtacggtga cttcgctgtc aacggctacg cggccctgga
     8101 gtacgtcggc tacaggcaca acgctcataa tattctctct gttaatagtc ggaaaaaata
     8161 aacacttgtc cacccgtaaa tggggggata cctatgttac ctggcatctg caatcagaca
     8221 agcagaattc gcaaatgcag cgaaagattt cggaattaaa ggtaaaaaaa gggagccgat
     8281 tagctccctg atgatattaa ctggcttttt taatatgcgg aaggtcgaac gctttgcgca
     8341 gcgcccgaac aaacgcttta tcatggcaga tagttttgcc agggctgtca gaaagtttcg
     8401 ccaccggttt accgttacac tctaccaact taatcacaat attcaggggt tttacctggg
     8461 ggatatcgca ggtcaggcga gtcccaatac caaaacttaa ttgcacgcgg gaagagaagt
     8521 ggcggtatag ctcaaccgct ttgcgtaaat ccagattgtc agagaaaacc agcgttttac
     8581 tctgtggatc aattcccagc tttttataat gtgcaatggc tttttcaccc cattcaaccg
     8641 ggtcgccaga gtcatgacgc aggccctgat accgactggc gaactcgaca ccgaaatcac
     8701 gcaggaaagc atccatagtg atgcagtcgg ttaatgcaat gccaagttgg tcgggatatt
     8761 cttccagcca ggcagcaagt gcagctcgct ggctgttggc taggtccggg ctgatttgct
     8821 gatgtgcctg gaaccattcg tgcgcctgtg ttcccatcgg cgtgagggaa agccgacgcg
     8881 ccagatcgta gttgctggtg cccacgaacc aggattcctg ttgcagacgc ttaacgatgg
     8941 tttcttgtac ttcgcgagaa aaacggcgac gggtgccaaa atccatcaga tggaagcgcg
     9001 acatatcaag accggcggtt aacgccgaga agtcgactaa tttgctttcc agcgtgtcga
     9061 gggcttgcgc aacgtcggcc tgcggtgagc gatagcgatg taccatttca ctgataaccg
     9121 ccagcaaagg aacttcccag aggatgactt cacgccacgg accgcttaag cgaatatcca
     9181 gcttgccatt atcgttggac acggtgactt gttccgggtt aaagcggaat tcgcgtaacc
     9241 agttaagata gtcggcctta aagaaaggca gggcagagag ccactgatat tcatcatcct
     9301 gcaggcgcag gtgctgcatc gcctgaatct gttcacgaat agcatcggca taaataccca
     9361 gcagatcgtc acctcggcaa cgaaactccg ccgcgacatg cacatcgtaa tagtgatgaa
     9421 acacggcttg ctgcatatgc aacttataag catctgtatc cagcaacgag tgcagaacag
     9481 gagaagcgaa ttgtgtcata ggtgcgcagt agcatcctcg tacaggagcg tttagtacaa
     9541 taaacatctt caggaactgc tggagtatac cttgtttcgc aatttattga accccgatca
     9601 caccatatgc cacctttctg gtcgatggca ttacgcggtg tatgttataa aaatgtagca
     9661 ataaaggcgt ttgtacctga aaagatgaag attctgcata gcgcgattta cgcaacagga
     9721 atagactgaa caccagactc tataaaagat gctaaaggtt atttatgact caacagccac
     9781 aagccaaata ccgtcacgat tatcgtgcgc cggattacca gattactgat attgacttga
     9841 cctttgacct cgacgcgcaa aagacggtcg ttaccgcggt cagccaggct gtccgtcatg
     9901 gtgcatcaga tgctccgctt cgtctcaacg gcgaagacct caaactggtt tctgttcata
     9961 ttaatgatga gccgtggacc gcctggaaag aagaagaggg cgcactggtc atcagtaatt
    10021 tgccggagca ttttacgctt aagatcgtta atgaaataag cccggcggcg aataccgcgc
    10081 tggaagggct ttatcagtca ggcgatgcgc tttgcaccca gtgtgaagcc gaaggtttcc
    10141 gccatattac gtattatctc gaccgcccgg acgtgctggc gcgttttacc accaaaatta
    10201 ttgccgataa aaccaaatat cccttcctgc tttccaacgg taaccgcgtt gcgcaaggtg
    10261 aactggaaaa cggacgccat tgggtacagt ggcaggaccc gttcccgaaa ccgtgctacc
    10321 tgtttgcgct ggtggcaggc gactttgatg tactgcgcga cacctttacc acgcgttctg
    10381 gtcgcgaagt ggcgctggag ctgtacgtcg atcgcggcaa ccttgatcgc gcgccgtggg
    10441 cgatgacctc gctgaaaaac tcaatgaaat gggatgaaga acgcttcggc ctggagtatg
    10501 acctcgacat ctatatgatc gtcgcggtgg atttcttcaa tatgggcgca atggagaata
    10561 agggtttgaa tatctttaac tccaaatatg tgctggcccg caccgacacc gccactgaca
    10621 aagattacct cgatattgaa cgcgttatcg gccatgaata tttccataac tggaccggta
    10681 accgagtcac ctgccgcgac tggttccagc tcagcctgaa agaaggttta accgtcttcc
    10741 gcgatcagga attcagctct gaccttggtt cccgtgcagt taaccgcatc aataatgtgc
    10801 gcaccatgcg cggattgcag tttgcggaag acgccagccc gatggcgcac ccgatccgcc
    10861 cggacatggt cattgagatg aacaacttct ataccctgac cgtttacgag aagggcgcgg
    10921 aagtgatccg tatgatccac accctgctgg gcgaagaaaa cttccagaaa gggatgcaac
    10981 tctatttcga gcgccatgat ggcagcgcgg caacctgcga cgactttgtg caggcgatgg
    11041 aagatgcgtc gaatgtcgat ctctcccatt tccgccgttg gtacagccag tccggcacgc
    11101 cgattgtgac cgtcaaagac gactacaatc cggaaaccga gcagtacacc ctgaccatca
    11161 gccagcgcac gccagccacg ccggatcagg cagaaaaaca gccgctgcat attccgtttg
    11221 ccatcgaatt gtatgacaac gaaggcaaag tgatctcgtt gcagaaaggc ggtcatccgg
    11281 tgaattccgt gctgaacgtc acccaggcgg aacagacctt tgtttttgat aatgtctact
    11341 tccagccggt gcctgcgctg ctgtgcgaat tctctgcgcc agtgaaactg gaatataagt
    11401 ggagcgatca gcaactgacc ttcctgatgc gtcatgcgcg taatgatttc tcccgctggg
    11461 atgcggcaca aagcctgctg gcaacctaca tcaagctgaa cgtcgcccga catcagcaag
    11521 ggcagccgct gtctctgccg gtacatgtgg ctgacgcttt ccgcgcagtg ctgctcgatg
    11581 agaagattga tccggcgctg gcggcagaaa tcctgacgct gccttctgtc aatgaaatgg
    11641 ctgaactgtt cgatatcatc gacccgattg ctattgccga agtacgcgaa gcactcactc
    11701 gtactctggc gactgaactg gcggatgagc tgctggctat ttacaacgcg aattaccaga
    11761 gcgagtaccg tgttgagcat gaagatattg cgaaacgcac tctgcgtaat gcctgcctgc
    11821 gcttccttgc ttttggtgaa acgcatctgg ctgacgtgct ggtgagcaag cagttccacg
    11881 aagcgaacaa tatgaccgat gcgctggcgg cgctttctgc ggcggttgcc gcacagctgc
    11941 catgccgtga tgcgctgatg caggaatacg acgataagtg gcatcaggac ggtctggtga
    12001 tggataaatg gtttatcctg caagccacca gcccggcggc gaatgtgctg gagacggtgc
    12061 gcggtctgtt gcagcatcgc tcatttacca tgagcaaccc gaaccgtatt cgttcgttga
    12121 ttggcgcgtt tgcgggcagc aatccggcag cgttccatgc cgaagatggg agcggttacc
    12181 agttcctggt ggaaatgctt accgacctca acagccgtaa cccgcaggtg gcttcacgtc
    12241 tgattgaacc gctgattcgc ctgaaacgtt atgatgccaa acgtcaggag aaaatgcgcg
    12301 cggcgctgga acagttgaaa gggctggaaa atctctctgg cgatctgtac gagaagatca
    12361 ccaaagcact ggcttgataa ataaccgaat ggcggcaata gcgccgccat tcggggaatt
    12421 tacccctgtt ttctcaggcg aatttcagat tcaccacgct gcatcaccct ttgcaacact
    12481 tccgattcca gctccgctaa tcgcaccgac cctaatcgac gcggaggggg gatatccact
    12541 gtcaaatcca gaccaatttt tccctcttca attaataaca cccggtcagc cattgctacc
    12601 gcttcgctca catcatgcgt caccaacagt acggtaaagc cgtgctcctg ccaaagtgac
    12661 acaatcaaat cctgcatctc gagtcgcgtt aaggcgtcca gtgccccgag cggttcatca
    12721 agcaacaata aacccggtcg atgaatcaac gctcttgcca gcaccactcg ctgtttctgc
    12781 ccgcctgaaa gtgcggcagg ccattccccg gcgcgattct ccagtcctac cgcagccaac
    12841 gcccgacgcg cggcatcgcg ccactggcct ttaaggccta acccaacgtt atcaatcacc
    12901 gatttccacg gtagcagacg cgcatcctga aacatcattc gcgtgtcttc ctgaatttca
    12961 gccagcggtg tggtgcctgc caacacatcg cctgcggttg gcgtttccag cccggccagc
    13021 aggcgcagca gggtactttt gccaccaccg ccacaaactg acctgtcgga atatgtaaat
    13081 ccagttggtt caggacgata ttttccgcgt aatgtttgct tactgcattg agcaacaatg
    13141 gtgtgccctg gttcagacga gcagtattca taccgtggcc tccttcaaat gataagccgg
    13201 gttccagcgc aaccagaggc gctctaacag ctgcgcgctg acgtcagcaa gtttgccgag
    13261 cagggcgtaa agaataatag cgactaccac cacgtccgtt tgcaaaaact ctcgcgcatt
    13321 catcgccaga taaccaatgc cggaattggc agaaatggtt tcggcaacaa tcagcgtcag
    13381 ccacatcagg cccaacgcaa aacgcacgcc gaccataatt gagggcaggg caccaggcag
    13441 gatcacatgg ataaacagcg gtatgccgga taacccatag ctacgcgcca tctccaccag
    13501 cccgcgatcg atattacgga tgccatgcca ggtgttgata taaatgggaa acagcgtacc
    13561 gagcgccacc agaaagattt ttgcggattc atcaatgcca aaccacaaaa tcaccagcgg
    13621 gatcagcgcc agatgcggca cgttgcgcaa catctgaatt gaggtatcca gcagccgttc
    13681 tccccagcga gatagcccgc taatcagtcc caaaatcaac cccagcgatc cgccaattga
    13741 aaagccaatc agcgcccgct aggaactgat cgccagatgc tgccacagtt cgccgctggc
    13801 ggagagcgtc cagaacgccg tcaccacccc ttccggtgag ggcaaaatac gcgtcgacag
    13861 ccagccaact gaggaggcca gttgccacac cgccacgatg cccaccggta aaaactaggg
    13921 ggcaacgcgc aataaccact tcttcactgg cgttgccatt atttcttcct tagctttgcg
    13981 cgactttacg ggggataaaa tcattcgcca ccgcttcgcc ttgcggattc agcggctgcg
    14041 gctggggaat ttccggaatg gcgacatcca gatgtgggaa cagcaactcg ccgacccgat
    14101 acgcttcttc cagatgcgga tagcccgaaa gcacaaagct gtcgatgcca agcgcggcgt
    14161 attcgttgat tcgcgcagcg accgtaggac catcgcccac cagcgccgtt ccggcaccgc
    14221 cgcgcactaa gccaacgccc gcccataaat tggggctgat ctccagattg tcgcgcttgc
    14281 cgttatgtaa cgccgccatt cgctgttgtc ctacggaatc cgtccgggcg aatgcggcct
    14341 gtgctttggc gatagtttca tcatcaagat gcgagattaa ccgctcggcg gcctgccacg
    14401 cttcgtcgtt agtttcacga acaatcacat gcagacgaat accgaaacga attttgcgtc
    14461 catgcgcggc agctttcgcc cgcacttgtt cgatcttctc ttttactagt tctggcggtt
    14521 cgccccaggt gaggtagaga tcaacttgtt ctgccgccag ctcctgggcg acgtctgacg
    14581 atccgccaaa gtaaagcgga ggataaggct gttgaatcgg cgggaagagc agttttgctc
    14641 cgcgcacatg aatatgttta ccgttgaaat tgacggtttc ccccagcaat aagcgccgcc
    14701 agacctaggt aaattccgcc gaggcttcgt agcgctcgct atgatcaagg aacacgccgt
    14761 cgcctgccag ctcttgtgga tcgctgcctg tgaccagatt aaacaacgca cgaccatttg
    14821 agagacggtc aagcgtggcg gcctggcgag cggcaacggt aggtgaggtt acgctggggc
    14881 gcagggcgac aagaaacttc agccgctgcg tcaccgggat catcgacgcc gccaccagcc
    14941 acgcatcttc acacgatcgc cccgttggga tcagcacacc ggtatagccc agacgatccg
    15001 ccgcttgcgc aatttgttgc agataaccgt gatcaaccgg gcgtgaacct tcttccgttc
    15061 ccagatagtg cccgtcaccg tgggtcggta aaaaccagaa catattcaga ctcataattg
    15121 ttttccttcc agttgagtgg gctgccagat gcgctggcga atatcgactt ttttcggcac
    15181 cagacgattt tcataaaaca gatctgccgt ttgctgctgt aaggcggcaa cctcggcgtt
    15241 aaccggtttg atggtggtag gagggcgatg atctaagtaa gaggcaatca ccggtgccgg
    15301 taagcccatc gtttttgcca gtaaagcgat gctttgctcg cgctggctgc gggttaacgc
    15361 atcggcctca ctaaaggttg ccagtacgcc ctgaataaaa gcgccgtttt tttctgcata
    15421 gggacgagct gccagataaa acgatccagt ttgattgaga tcggtgccgt ctttcagcac
    15481 ccgcatgccg ccctgtaata atgcagcaga gtagtaggga tcccagatag cccaggcgtc
    15541 aacgttacct tgctggaacg cggcgcgggc atcagcgggc gtcaggtaag tgggttggat
    15601 atcggtaaac ttaagtccgg cctgacgcag tgcacgcagt aaaaggttgt gtgaactgga
    15661 acctttctga aaggcaactt tgtgaccttt aagatcggct acggttttga tcgggctgtt
    15721 ttctgccacc agaatcactt cggctttggg cttcggtggc tcgacgccca catataccaa
    15781 atcagccccg gcagcctggg caaagattgg cggaatatcc ccggtactgc cgagatcaat
    15841 actgccaacg tttaaggctt ccaacatttg cggacccgcg gggaactcca cccaggagat
    15901 ttttgattgc ggatagcgtt tttccagtaa ctggtggctt tttgccagta ccataccaat
    15961 actgcctttc tgatagccta tacataacgc ttcaggagag gattctgcag caaccgcaat
    16021 cgtagagacg ctaagcaatc ccaccagcgc cagtttaatg atgttacgca tgggcattac
    16081 ctcgcagaga cagaaggtca ggaacctgaa catcgcggcg gtgcaatgcc tgccagaaag
    16141 tttctagcgc ggtatcaaga cgggtttgca gatttggcgt gaactggggt ctgtgatggt
    16201 aatcaattac ttgtgagtca tcggcaaaca cgccgtgcag gatctcctga gctttcagtg
    16261 cgcttaaaac tggtttaagg gcataatcga ccgccagcag atgggccacg gtaccgcccg
    16321 tcgccagcgg tagcaccact ttgccttgca aagcgcgctc tggcagcagg tcgagcaggg
    16381 ttttcagcgc gccggaatag gcggctttat acacaggtgt agcgactatc agtccatcag
    16441 cctgttgcag ctgttcggtg aaggtcttga gtgccggact atcgaaacga gcataaagca
    16501 gatcttccgg gacgaagttt tgcagattcc agtgataaac ctctacatcc aggccattta
    16561 gtttttcccg cgcatattcc agcaaggagc tggagcgaga aggaaagcga ggactacccg
    16621 ccagggtgat gacacgcata ctctctcctt ataaccaatt gttctttttt tgttaacatt
    16681 gataacaatt cggtcagtct gtcggagaga caagaaaatg ccaaatataa attttgtgta
    16741 tctttttctg aaaataaact aaagaaaggg ctttatatat cacgcatatt tatttgttgg
    16801 atagtcatta gatgttgaat caatgaatta ctcgttcagt taatatttaa atattcatga
    16861 aatctataaa ttaaag
//
LOCUS       DAJVSY010000086        16750 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.086, whole genome shotgun sequence.
ACCESSION   DAJVSY010000086 DAJVSY010000000
VERSION     DAJVSY010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16750)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16750)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16750
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.086"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..2018
                     /gene="fhuE"
                     /locus_tag="OQQ19_002527"
     CDS             <1..2018
                     /gene="fhuE"
                     /locus_tag="OQQ19_002527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ferric-rhodotorulic acid/ferric-coprogen
                     receptor FhuE"
                     /protein_id="HCS1804110.1"
                     /translation="DYSVTSTSAGTKMQMTQRDIPQSVTIVSQQRMEDQQLQTLGEVM
                     ENTLEISKSQADSDRALYYSRGFQIDNYMVDGIPTYFESRWNLGDALSDMALFERVEV
                     VRGATGLMTGTGNPSAAIDMVRKHATSREFKGDVSAEYGSWNKERYVADLQSPLTEDG
                     KIRARIVGGYQNNDSWLDRYNSEKTFFSGIVDADLGDLTTLSAGYEYQRIDVNSPTWG
                     GLPRWNTDGSSNSYDRARSTAPDWAYNDKEINKVFMTLKQRFADTWQATLNATHSEVE
                     FDSKMMYVDAYVNKADGMLVGPYSNYGPGFDYVGGTGWNSGKRKVDALDLFADGSYEL
                     FGRQHNLMFGGSYSKQNNRYFSSWANIFPDEIGSFYNFNGNFPQTDWSPQSLAQDDTT
                     HMKSLYAATRVTLADPLHLILGARYTNWRVDTLTYSMEKNHTTPYAGLVFDINDNWST
                     YASYTSIFQPQNDRDSSGKYLAPITGNNYELGLKSGWMNSRLTTTLAIFRIEQDNVAQ
                     STGTPIPGSNGETAYKAVDGTVSKGVEFELNGAITDNWQLTFGATRYIAEDNEGNAVN
                     PNLPRTTVKMFTSYRLPVMPELTVGGGVNWQNRVYTDTVTPYGTFRAEQGSYALVDLF
                     TRYQVTKNFSLQGNVNNLFDKTYDTNMEGSIVYGAPRNFSITGTYQF"
     gene            complement(2078..3511)
                     /gene="ptsG"
                     /locus_tag="OQQ19_002528"
     CDS             complement(2078..3511)
                     /gene="ptsG"
                     /locus_tag="OQQ19_002528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000475716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIBC"
                     /protein_id="HCS1804111.1"
                     /translation="MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVV
                     SHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLH
                     LPAEEIASKHLADTGVLGGIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLA
                     AIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPF
                     QMQIGEYTNAAGQVFHGDIPRYMAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPEN
                     RAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMHDG
                     TSFSHGLIDFIVLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGREDATED
                     AKATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVV
                     AGSGVQAIFGTKSDNLKTEMDEYIRNH"
     gene            complement(3806..4603)
                     /locus_tag="OQQ19_002529"
     CDS             complement(3806..4603)
                     /locus_tag="OQQ19_002529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS1804112.1"
                     /translation="MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTL
                     PGYLHMRDLVGERDNVVFSCGVHPLNQNDPYDVEDLRRLAAEEGVVALGETGLDYYYT
                     PETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTED
                     RETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKE
                     NQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRLQSIR"
     gene            complement(4614..5618)
                     /gene="holB"
                     /locus_tag="OQQ19_002530"
     CDS             complement(4614..5618)
                     /gene="holB"
                     /locus_tag="OQQ19_002530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HCS1804113.1"
                     /translation="MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL
                     SRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGIDAVREVTEKLNE
                     HARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR
                     LHYLAPPPEQYTVTWLSREVTMSQDALLAALRLSAGSPSAALALFQGDNWQARETLCQ
                     ALAYSVPSGDWYSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAE
                     LANHLSPSRLQAILGDVCHIREQLMSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL
                     "
     gene            complement(5615..6256)
                     /locus_tag="OQQ19_002531"
     CDS             complement(5615..6256)
                     /locus_tag="OQQ19_002531"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HCS1804114.1"
                     /translation="MRSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGT
                     QLAEKLRSLVLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHD
                     LSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIE
                     QESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKELDA"
     gene            complement(6246..7268)
                     /gene="yceG"
                     /locus_tag="OQQ19_002532"
     CDS             complement(6246..7268)
                     /gene="yceG"
                     /locus_tag="OQQ19_002532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein YceG"
                     /protein_id="HCS1804115.1"
                     /translation="MKKVLLIILLLLVVLGIAAGVGVWKVRHLADSKLLIKEETIFTL
                     KPGTGRLALGEQLYADKIINRPRVFQWLLRIEPDLSHFKAGTYRFTPQMTVREMLKLL
                     ESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGW
                     FWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKE
                     TAVASERDQVASVFINRLRIGMRLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTI
                     TGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVL
                     KEKNAQ"
     gene            complement(7271..8080)
                     /gene="pabC"
                     /locus_tag="OQQ19_002533"
     CDS             complement(7271..8080)
                     /gene="pabC"
                     /locus_tag="OQQ19_002533"
                     /EC_number="4.1.3.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate lyase"
                     /protein_id="HCS1804116.1"
                     /translation="MFLINGHKQESLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQ
                     RLQDACQRLMIFCDFWPQLEQEMKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATR
                     ILSVTVYPAHYDRLRNEGMTLALSPVRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNAD
                     EALVLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVE
                     VQASLEEALQADEMVICNALMPVMPVRACGDVSFSSATLYEYLAPLCERPN"
     gene            complement(8200..9441)
                     /gene="fabF"
                     /locus_tag="OQQ19_002534"
     CDS             complement(8200..9441)
                     /gene="fabF"
                     /locus_tag="OQQ19_002534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HCS1804117.1"
                     /translation="MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTS
                     AYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIG
                     AAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISI
                     ATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQA
                     ASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPEN
                     GAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKAIFGEAASRVLVSS
                     TKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNLDEGCDLDFVPHEARQVSGME
                     YTLCNSFGFGGTNGSLIFKKI"
     gene            complement(9529..9765)
                     /gene="acpP"
                     /locus_tag="OQQ19_002535"
     CDS             complement(9529..9765)
                     /gene="acpP"
                     /locus_tag="OQQ19_002535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016535861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HCS1804118.1"
                     /translation="MSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELV
                     MALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA"
     gene            complement(9976..10710)
                     /gene="fabG"
                     /locus_tag="OQQ19_002536"
     CDS             complement(9976..10710)
                     /gene="fabG"
                     /locus_tag="OQQ19_002536"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HCS1804119.1"
                     /translation="MNFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQA
                     ISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEE
                     WNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIG
                     FSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIANA
                     VAFLASDEAAYITGETLHVNGGMYMV"
     gene            complement(10723..11652)
                     /gene="fabD"
                     /locus_tag="OQQ19_002537"
     CDS             complement(10723..11652)
                     /gene="fabD"
                     /locus_tag="OQQ19_002537"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HCS1804120.1"
                     /translation="MTQFAFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDL
                     WALTQQGPAEELNKTWQTQPALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCA
                     GVIDFADAVRLVEMRGKFMQEAVPEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPVN
                     FNSPGQVVIAGHKEAVERAGAACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAK
                     ITFNAPTVPVVNNVDVKCETNGDAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVG
                     PGKVLTGLTKRIVDTLTASALNEPSAMAAALEL"
     gene            complement(11668..12621)
                     /gene="fabH"
                     /locus_tag="OQQ19_002538"
     CDS             complement(11668..12621)
                     /gene="fabH"
                     /locus_tag="OQQ19_002538"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HCS1804121.1"
                     /translation="MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHI
                     AAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG
                     CPAFDVAAACAGFTYALSVANQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG
                     AGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVT
                     ELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTS
                     AASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF"
     gene            complement(12689..13759)
                     /gene="plsX"
                     /locus_tag="OQQ19_002539"
     CDS             complement(12689..13759)
                     /gene="plsX"
                     /locus_tag="OQQ19_002539"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415608.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HCS1804122.1"
                     /translation="MTRLTLALDVMGGDFGPSVTVPAALQALNSNSQLTLLLVGNPDA
                     ITPLLAKADFEQRSRLQIIPAQSVIASDARPSQAIRASRGSSMRMALELVKEGRAQAC
                     VSAGNTGALMGLAKLLLRPLEGIERPALVTVLPHQQKGKTVVLDLGANVDCDSTMLVQ
                     FAIMGSVLAEEVVEIPNPRVALLNIGEEEVKGLDSIRDASAVLKTIPSINYIGYLEAN
                     ELLTGKTDVLVCDGFTGNVTLKTMEGVVRMFLSLLKSQGEGKKRSWWLLLLKRWLQKS
                     LTRRFSHLNPDQYNGACLLGLRGTVIKSHGAANQRAFAVAIEQAVQAVQRQVPQRIAA
                     RLESVYPAGFELLDGGKSGTLR"
     gene            complement(13840..14013)
                     /gene="rpmF"
                     /locus_tag="OQQ19_002540"
     CDS             complement(13840..14013)
                     /gene="rpmF"
                     /locus_tag="OQQ19_002540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HCS1804123.1"
                     /translation="MAVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHIT
                     ADGYYRGRKVIAK"
     gene            complement(14065..14586)
                     /gene="yceD"
                     /locus_tag="OQQ19_002541"
     CDS             complement(14065..14586)
                     /gene="yceD"
                     /locus_tag="OQQ19_002541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001174481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA accumulation protein YceD"
                     /protein_id="HCS1804124.1"
                     /translation="MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSD
                     VECSMSFAIDNQRLAVLNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEAL
                     PEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEVQK
                     PNPFAVLASLKRK"
     gene            14785..15369
                     /gene="yceF"
                     /locus_tag="OQQ19_002542"
     CDS             14785..15369
                     /gene="yceF"
                     /locus_tag="OQQ19_002542"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415605.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-methyl-GTP pyrophosphatase"
                     /protein_id="HCS1804125.1"
                     /translation="MPKLILASTSPWRRALLEKLQISFECAAPEVDETPRSDESPRQL
                     VLRLAQEKAQSLASRYPDHLIIGSDQVCVLDGEITGKPLTEENARLQLRKASGNIVTF
                     YTGLALFNSANGHLQTEVEPFDVHFRHLCEAEIDNYVRKEHPLHCAGSFKSEGFGITL
                     FERLEGRDPNTLVGLPLIALCQMLRREGKNPLMG"
     gene            complement(15481..16440)
                     /gene="rluC"
                     /locus_tag="OQQ19_002543"
     CDS             complement(15481..16440)
                     /gene="rluC"
                     /locus_tag="OQQ19_002543"
                     /EC_number="5.4.99.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(955/2504/2580) synthase
                     RluC"
                     /protein_id="HCS1804126.1"
                     /translation="MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRK
                     GEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHI
                     LVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSAL
                     RSLHEQLREKGMQKDYLALVRSQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSET
                     RFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG
                     LNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR"
BASE COUNT         4162 a         4546 c         4045 g         3997 t
ORIGIN      
        1 atgattacag cgtaacgtct acctctgcgg gtaccaaaat gcagatgact caacgtgata
       61 ttcctcagtc ggtcactatt gttagccagc agcggatgga agatcagcag ttacaaacgc
      121 tgggcgaagt gatggaaaac acgctggaga tcagcaaaag tcaggcggat tccgatcgtg
      181 ctctttatta ttcccgcgga ttccagatcg ataactatat ggttgatggt atccccacct
      241 attttgaatc gcgctggaat ctgggcgatg cactttctga tatggcactg tttgaacgcg
      301 tagaagtagt gcgtggcgcg acaggactca tgaccgggac gggtaatcca tctgcggcaa
      361 ttgatatggt tcgaaaacac gcgaccagtc gtgaatttaa aggcgatgtc tcggcggaat
      421 acggtagctg gaacaaagaa cggtatgtgg cggatttaca aagcccactc accgaagacg
      481 gtaaaatccg cgcgcgaatt gtcggcggct accagaataa cgactcatgg ctggaccgct
      541 acaacagtga aaagaccttc ttctccggca ttgtcgatgc tgatttaggc gatcttacga
      601 cgctttcagc cggttacgaa tatcagcgca ttgatgttaa tagccctacc tggggcggtt
      661 taccgcgctg gaatactgat ggcagcagca acagttacga tcgtgcacgc agtaccgcac
      721 ctgactgggc gtacaacgat aaagagatca acaaggtctt tatgaccctg aagcagcggt
      781 ttgctgatac ctggcaagcg acactgaatg ccacccactc tgaagtcgaa tttgacagca
      841 aaatgatgta tgtcgatgcc tatgtaaaca aagcggatgg tatgctggtt gggccataca
      901 gtaattatgg acctggcttt gattatgtcg gcggcaccgg ttggaacagt ggcaaacgta
      961 aagttgatgc gctggatttg ttcgctgacg gtagttatga attgtttggt cgtcagcaca
     1021 atctaatgtt tggtggcagt tacagcaaac aaaacaatcg ttacttcagt tcatgggcca
     1081 acatcttccc ggatgaaatt ggcagtttct acaactttaa tggcaatttc ccacaaaccg
     1141 actggtcacc acagagcctg gcacaggacg ataccacaca tatgaaatcg ttatatgctg
     1201 ccactcgagt cacccttgcc gatccgctgc atctgatcct cggcgcacgt tataccaact
     1261 ggcgggttga tacgctgact tacagcatgg agaaaaacca caccacgcct tacgctggtc
     1321 tggtgtttga catcaatgac aactggtcga cctacgccag ctatacctct attttccagc
     1381 cgcaaaatga tcgtgacagt tcaggcaaat atctggctcc aatcaccggt aacaactacg
     1441 agctgggtct gaaatcgggc tggatgaata gccgtctgac caccacgtta gccatcttcc
     1501 gtattgagca ggataatgtc gctcagtcca ccggtacacc tatccccggc agcaacggcg
     1561 aaaccgccta taaagcggtg gatgggacag tcagtaaagg ggtggaattt gaactcaacg
     1621 gcgcaattac cgacaactgg cagctgacat ttggcgcaac gcgctatatt gcagaggata
     1681 acgaaggaaa cgccgttaat cctaatctgc cacgcaccac ggttaaaatg ttcaccagct
     1741 atcggttgcc tgtcatgcca gagttgacag tcggcggtgg tgtgaactgg caaaatcgcg
     1801 tgtataccga caccgtgaca ccgtatggca ccttccgcgc cgagcaaggt agctacgcgc
     1861 tggtggatct cttcacccgc taccaggtga cgaaaaactt ctcgttacag gggaacgtca
     1921 ataacctgtt cgacaaaacc tacgatacca acatggaagg ttctatcgtc tacggcgcac
     1981 cgcgtaattt cagcattacc ggcacgtatc aattctgaat aacacctgta aaaaaggcag
     2041 ccatctggct gccttagtct ccccaacgtc ttacggatta gtggttacgg atgtactcat
     2101 ccatctcggt tttcaggtta tcggatttag taccgaaaat cgcctgaaca ccagaacccg
     2161 caaccactac gcccgctgcg cccagtttct tcaggccagc ctgatccact ttagacacat
     2221 cagcaacgct gacgcgcaga cgggtaatac atgcgtcgag gttagtaatg ttttctttac
     2281 caccaaatgc agcaaccaga gccggtgcca tttcgctggt acctgttgct tttgcatctt
     2341 cagtcgcgtc ttcacgaccc ggcgttttca gatccagtgc tttaatcagc acgcggaaga
     2401 tggtgtagta aacaatcgca taaccgatac cgacgatcgg gaacagccac agtttgctgc
     2461 tgttaccaga cagaacgata aagtcgatca gaccgtgcga gaacgacgta ccgtcatgca
     2521 tccccagaag aatacagatt gggaatgcca ggcctgccag aatcgcgtgg atgatgtaca
     2581 ggatcggcgc aacgaacatg aaggagaact cgatcggctc ggtgataccg gtcaggaacg
     2641 aggtcagcgc cgcggagatc ataataccgc ccactttcgc gcggttttct ggtttagcag
     2701 agtgccagat agcaattgcg gcagctggca gaccgtacat tttgaacagg aagccaccag
     2761 acagtttacc cgcagtcggg tcacccgcca tataacgcgg aatgtcgccg tggaaaacct
     2821 gacctgctgc gttggtgtat tcaccaatct gcatctggaa aggtacgttc cagatgtggt
     2881 gcagaccaaa cggtaccagg caacgttcga tgaaaccgta aatgccaaac gcaactaccg
     2941 ggttctggta agcagcccac tgagagaagg tctggattgc agaaccaatc ggcggccaaa
     3001 tgaaggacag cacaacgcca gtaaagatgg cagccaggcc agaaatgatc ggcacaaagc
     3061 gtttaccggc aaagaagcca agatactcag gcagcttaat acggtagaaa cggttaaaca
     3121 tgtacgctgc gatcgcaccg gagataatcc ctccgagtac gccagtatcc gccaggtgtt
     3181 tagaggcgat ttcttcagca ggtaaatgca gtaccagtgg cgcaaccacg gccatggttt
     3241 taaccatgat gccataggca acaactgcgg ccagcgcgga tacgccatcg ttattggtaa
     3301 agccgagggc gacaccgatc gcaaaaatca gtggcatgtt tgcaaagacg gaaccgcctg
     3361 cttctgccat aacatgcgat acaacggcgg gcagccagct gaaattcgcg gaaccgacgc
     3421 ccagcagaat acctgcgata ggtagtacgg ataccggcag catcagcgat ttaccgacct
     3481 tttgcaggtt agcaaatgca ttcttaaaca taattgagag tgctcctgag tatgggtgct
     3541 ttttttacgt tctcacgcgt ggcaaggggg gagagcctcg ccgtgtacag ggcatctaag
     3601 cgccctttat ttattacaca gagtaaaata attcagtgcc aatttgtttg acggctatca
     3661 cgtttcaact tcagatcatt ggagaagttg cacattttga caaaacatat gtcacaatat
     3721 ttcaaacgcg gttattcacc gcccaatttt cggcggtgaa ctttactcgt tttagccatt
     3781 aattacgagc tttaaaaaaa ctcattcaac ggatggattg aaggcgggaa gcgtcgatgt
     3841 gaaacagacg ggcgaagtta tcggtggtta cctgcgccag ttcttcaacg gcaacacctt
     3901 tcaacacagc catgtattct gcaacgtcac gaaccatcgc aggttgattc tcttttcctc
     3961 gatgcggtac cggcgcaagg taaggtgagt cagtttccac cagtaatcga tccaggggga
     4021 cataacgcgc agcatcgcgc agttgctccg cattacggaa ggtcacaatg ccggaaaagg
     4081 agatgtaaaa tccgagatcc agtaatttac ccgccgtttc tctgtcctct gtaaaacagt
     4141 gtagtacgcc accgcaatcc gtcacttttt cttcgcgcag aattgccagc gtatcggcac
     4201 gggcgtcacg ggtatggacg ataaccggct tgttcagttc acgaccaatc tggatatgat
     4261 ggatgaagga ctcttgctga cgtactttag tttccggtgt gtaataataa tccagcccgg
     4321 tttcacccag cgctacaaca ccctcttctg ccgccagacg gcgtaaatct tctacatcgt
     4381 agggatcatt ctggttgagt ggatgcacgc cacaagaaaa tacgacgttg tcacgttcgc
     4441 ctaccagatc ccgcatatgt aaataacccg gtaatgttgt ggcgactgcc agacaaaatt
     4501 tcacatcgcg tgcggcggct ttcgccagaa cgtcatccac gtccttatgc aaagattcat
     4561 aatccagacc atcgagatgg cagtgtgagt cgactaaaaa catgatgtct ctcttaaaga
     4621 tgaggaaccg gtagcacaac gcccggttgc aggtaatgct caatacgcag taaaagatcg
     4681 gtgatgagaa gctcgcggtt gatgcctgtg acagacatta actgttcacg aatgtggcaa
     4741 acatccccca gtatagcctg caggcgcgag ggagaaagat ggtttgccag ttcggcgacc
     4801 aggcccggca catcaacatt ggtcacctgt gcagcgccat gatggcgttt tagcgcatcc
     4861 atcagcaacg ttgccagcca gtgtaaacgc gccggagctt gttcatgatt aagggccgcc
     4921 agcagcgaat accagtcgcc cgatggtacg ctatatgcca acgcctgaca caatgtttca
     4981 cgagcctgcc agttatctcc ctgaaacaac gccagtgccg cgctaggcga accggcactt
     5041 aagcgcaatg cggcaagtaa tgcatcctgt gacattgtca cttcgcgtga aagccaggtc
     5101 acggtgtact gttccggcgg cggcgcaagg taatgtaacc gacaacgact acgtaatgtt
     5161 gccagtaaac gttcaggctc gcgggtagcc aggaaaaacc aggtttctgc tggtggctct
     5221 tcaagcgttt tcagcaatgc gttagccgcg gcgtcggtca gtaaggcagc atcggttacc
     5281 cagacaactt tcgcaccacc taggcgtgcg tgctcattca gcttttcggt gacctcacgt
     5341 accgcatcaa tgcccagcgt atttttccct ttttcgggag ccagggtgta gtaatcggga
     5401 tgcgtgccag cctgcatcaa ctgacatcca cgacagtgac cgcaactttt gtggccctgc
     5461 ggttgttggc agagtaaata acggctcagg gcgtagatta aagcatcatc gcccatgccc
     5521 ggtaacgcct gaatgagtag cgcatggtga cctcttccgg cctgatagct ggctaccagt
     5581 ttttcgaaat caggtcgtaa ccatggatac catctcatgc gtccaactcc ttcacccagt
     5641 gggtcacggt agtacggatt gcatccatca cggcctccag cggctgggtg gcatcaatgg
     5701 tatgaatact tttatcttgt gcagccagtt ccagatagcg ggcgcgggtg cgattaaaga
     5761 aatcgaaaga ctcttgctca atacgatcca gctcgccgcg cgcacgcgcg cgttttaagc
     5821 caacttccgg ggtaacatcg agatagagcg ttaagtcagg gcgaaaatcc ccgagaacag
     5881 catcacgcag tgttgccagc atatgttggt caataccacg tcctccgccc tgatacgcct
     5941 gagtggagag atcgtggcga tcgccaatca cccaggtgcc gttagccaga gctggtttga
     6001 tgaccgtttc taccagttga acgcgcgcgg cataaaacat cagaacttcg gctttatcgg
     6061 taatgacttc atcgcctacc gatttgatat ccagcaccag gcttcttaac ttttcggcaa
     6121 gttgcgtacc gccaggttcc cgagtgaaaa ccatgtcgcg gatacccagt tgctcaagcg
     6181 tctcaaccac cacattacgc gcggtagttt tgcctgcgcc ttccagcccc tcaatgacga
     6241 tatacttact gcgcattttt ttccttaagc actttcagat aatcctgcac agacttgtta
     6301 tggctggcaa gattggtatt aaacgtgtga ccacctttac catcggccac aaaatagaga
     6361 tacggcgttt ttgccggatg cgcagcagcc ttcagcgaat ccgcccccgg cgtagctatc
     6421 gcacctggcg gcaaaccggt aatggtatag gtgttatacg ctgtcggcgt ttccaggtct
     6481 gcacgagaaa gtttgccatt ataacgctct cccatcccgt aaatcacggt tgggtcggtc
     6541 tgcaggcgca taccaatgcg taaacggttg ataaataccg aggcaacctg atcgcgttca
     6601 ctggcaacgg cggtttcttt ttcgataatt gatgccatcg tcaccagctg gtttttatct
     6661 ttataaggca gaccgtccgc acgcccttcc caggcgctat cgaccgcttt caccattttc
     6721 ttgtgcgctc gcttgagtaa cgcgacatcg gtggtattgg cggtatacat ccaggtgtct
     6781 ggccagaacc aaccttcaat ccactccggg ttttccagtt caagtgcctg cgctacggtg
     6841 gcgtacttat cgtcactcag cgtgtgcttg atatacggag cctcacgcaa ttgcttgagg
     6901 tagtcgctca gacgcatccc ttctaccagt cgcagcggga actgtgcttc tttaccgctt
     6961 tccagcaatt tcagcatctc gcgcacggtc atctgcggtg taaagcggta agtcccggct
     7021 ttaaagtgag aaagatccgg ttcgatacgc agcaaccatt gaaaaacccg tgggcgattg
     7081 atgatcttat cggcataaag ctgttcacca agcgccagac gtccggtccc tggcttcagg
     7141 gtaaatatcg tctcttcttt gataagcaat ttgctgtcgg caagatggcg aaccttccag
     7201 acgcccacac cagcggcgat acccagtacc accagcaata acaagataat caataacact
     7261 tttttcatga ctaattcggg cgctcacaaa gtggggctaa atattcatat aacgttgctg
     7321 acgaaaagga gacatcgcca caggcacgta cgggcatcac tggcattaac gcattacaaa
     7381 taaccatctc atctgcctgc aacgcctctt ccagagaggc ttgcacttcg acaagctgat
     7441 aagaggattg tgccagcaaa cggatacaga attgtcgcat aatgccgtta acacctgcct
     7501 gatccagtcg cggcgtataa actacattgc ccttccgcca gaacaaatta gccgcacagc
     7561 attccgtaac ccacccttcg ctgtcaagga ccagcgcctc atcagcgttt gtctgctcaa
     7621 gatgagagcg gatcaatact tgctcaagcc gattaagatg tttaatacct gcaagatggg
     7681 gattgcgccc cagccgcacc gggcttagcg ccaacgtcat cccttcgtta cgcaaacggt
     7741 cgtaatgtgc aggataaacc gtaacggaga gaatccgcgt tgccggtcca ctgttcaatg
     7801 tgctgtaccc tcgcccgcca ctaccgcgac tgatcacgac tttcagcaca ccattttgct
     7861 gttctgctgc cagcgttttc atctcttgtt caagctgagg ccagaagtca cagaaaatca
     7921 tcaaccgctg acaagcatcc tgtagtcgct ggatatgcgc cgataacaaa ctgactttac
     7981 cgtcgataac tctggcggtg gtaaaacaac catcaccaaa ctgcgttgcc cgatcgctta
     8041 ctgccagcga ttcctgctta tgaccgttaa ttaagaacat accggctcct tatcagagaa
     8101 ttgttagtgt ggcagcatgc tcactacgga acaagtcgga ataaaagcta agaaaaaagg
     8161 cccgcaagcg gaccttttat atgggtggga aatgacaact tagatctttt taaagatcaa
     8221 agaaccatta gtgccaccga agccgaagga gttacacagc gtgtattcca ttccgctgac
     8281 ctgacgtgct tcatgcggta cgaaatccag atcgcaacct tcatccaggt tatccaggtt
     8341 gatggttggc ggaacagcct gatcgcgcag cgccaggatg gagtagatag actctactgc
     8401 ccccgccgca cctaacaggt gaccggtcat agatttcgtg gagcttacca acacacggct
     8461 tgcagcttca ccgaagatgg ctttcaccgc ctgcgcttca gctttatcgc cagccggcgt
     8521 agaagtaccg tgcgcgttaa cgtagccaat ctgactcgct tcaatgcctg catcacgcag
     8581 agcatttgcc attgccagag ctgcgcctgc gccattttct ggcggtgacg tcatatgata
     8641 agcatcgctg ctcataccaa agccgacgag ttcagcgtaa attttcgcac cgcgtttttt
     8701 cgcgtgttcg tactcttcta gtaccagcat accggcacca tcgcccagta cgaagccatc
     8761 acgctcttta tcccacgggc ggctcgccgc ttgcgggtta tcattgcggg tagataatgc
     8821 acgtgccgcg ccaaaaccac caacgcccag cggcgtactg gctttctctg cgccacctgc
     8881 aaccatcacg tcagcatcgc catacgcgat aatacgcgca gcatgaccaa tgttgtgcac
     8941 gccggaagta caggcggtcg cgatagagat gcttgggcca cgcaggccat acatgatagt
     9001 cagatgacct gccaccatgt tcacaatcgt tgacggaacg aagaatgggc tgatcttacg
     9061 tggaccaccg ttcatcagag atgtgtggtt ttcttcgatc agtccgaggc cgccaatccc
     9121 ggagccaatt gcggcaccaa tgcgggttgc gttctcttcc gttatttcaa ggccagaatc
     9181 ctgcatggcc tgaacgccag cgacaattcc atattgaatg aaggcatcca tcttgcgctg
     9241 ttctttgcgc gagataatgt cctcacagtt aaaatccttt actaagccag caaatttcgt
     9301 tgcataggcg ctagtatcga aatggtcgat taggctgatg ccactctgac cggcaagcag
     9361 agctttccag gtagactcta cggtattgcc gacaggagac aacatgccca gtccggtcac
     9421 aactacacga cgcttagaca cgtttgtcct ccagggaggg aaaaaatgat tctagtggga
     9481 caaaaagata aaactcaggc ggtcgaacga ccgcctggag atgttcactt acgcctggtg
     9541 gccgttgatg taatcaatgg cagcctgaac ggtggtgatt ttctcagctt cttcgtccgg
     9601 aatctcagta tcaaactctt cttccagagc cattaccagc tcaacggtgt caagagaatc
     9661 cgcgcccagg tcttcaacga aagaagcatt gttggtaact tcttcctgct taacgcccag
     9721 ctgttcgccg ataattttct taacgcgttc ttcgatagtg ctcatactct taaatttcct
     9781 atcaaaactc gctttcgcga tggttttcgt agtgtataaa atgttgaaaa atttgcaact
     9841 aaatcccggc aggtcttacc acgattttac gttattttga ggccttaccc cccaataacg
     9901 caaatcattt tgcactaatt attactcata accacgcaga ctgcgcgcaa catgagcatt
     9961 ttgtgcaaat cgcggtcaga ccatgtacat cccgccgttc acatgcaaag tttcacccgt
    10021 gatgtaagct gcttcgtcgg atgccaggaa tgcaaccgcg ttggcgattt cctgtgcgcc
    10081 gccgaggcga cccgcaggaa cctgcgccag gatacccgca cgctggtcat cgctcagcgc
    10141 acgtgtcatg tccgtttcaa taaagcccgg agcaacaacg tttacagtaa taccgcgtga
    10201 cgcaacttcg cgcgccagtg atttactgaa gccgatcaag cccgctttcg ccgcagcgta
    10261 gttggcctga ccgccatttc ccatggtacc aaccacagaa ccgatagtga taatacgacc
    10321 atgacgcttt ttcatcatag cgcgcattac cgcttttgac agacggaaaa cagatgaaag
    10381 gttggtttcg ataatatcgt tccactcttc atctttcatt cgcattaaca ggttatcacg
    10441 agtgataccg gcattattga ccaggatatc cacttcacca aattctgcgc gaattttttc
    10501 cagaacagat tcgatagatg ccgggtcggt cacattcaac atcagacctt tgccgttagc
    10561 acctaaataa tcactgatcg cctgagcgcc attttcactg gtcgcagtgc caataacttt
    10621 cgcgccacgg gctgcgagcg tttcagcaat tgcgcggcca attccgcggc ttgcaccggt
    10681 taccagtgcg atttttcctt caaaattcat gattttcctc ttttaaagct cgagcgccgc
    10741 tgccatcgct gaaggttcgt tcagcgccga ggcggtcagg gtgtcgacaa tgcgtttcgt
    10801 caggccagtt agcactttgc ccgggccgac ttcatagaga tgttctacgc cttgcgctgc
    10861 catgtactca acagacttcg tccactgaac cgggttatac aactgacgta ccagtgcgtc
    10921 acgaatggca tcaccattgg tttcgcattt cacatcaacg ttattcacaa caggaactgt
    10981 tggtgcgtta aaggtgattt tcgctaattc tactgccagt ttgtcggctg ctggtttcat
    11041 cagcgcacag tgagacggta cgctcactgg taacggcagc gcgcgttttg cgcccgcagc
    11101 tttacaggca gcgccagcac gctcaaccgc ctctttatga ccggcaataa ccacctgtcc
    11161 cggagagtta aagtttaccg gagaaacgac ctgaccttct gcagcttctt cacacgcttt
    11221 cgcaatagac gcatcatcca gaccgatgat tgccgccata gcgcccgtgc cttctggtac
    11281 ggcttcttgc atgaacttgc cgcgcatctc aaccagacgc accgcatcag cgaaatcaat
    11341 cacgccagcg caaaccaacg cggagtattc ccccaggctg tgaccggcca tcattgccgg
    11401 tgctttaccg ccctgctgct gccatacgcg atacagcgca acagatgcag tcaacagcgc
    11461 tggctgggtt tgccaggttt tattcagttc ttcagctggc ccctgctggg tcagcgccca
    11521 caggtcgtag cccagcgccg cagaagcttc agcaaacgtt tcttcgacaa ttggatagct
    11581 cgccgccata tcagccagca ttccaacggt ttgagaaccc tgtccaggga acacaaatgc
    11641 aaattgcgtc atgttttaat ccttatccta gaaacgaacc agcgcggagc cccaggtgaa
    11701 tccaccgcca aaggcttcaa gcagaaccaa ctgccccggc ttaatgcgcc cgtcgcgtac
    11761 agcttcatcc agcgcgcacg ggacagaggc cgcagaggta ttaccgtggc gatccaacgt
    11821 caccacgaca ttgtccatag acataccgag ttttttcgcc gttgcactga taatacgcag
    11881 gttagcctga tgcggaacca gccagtccag ttgagaacgg tcaagattat tcgccgccag
    11941 cgtctcatca acgatgtgcg ccagttccgt taccgcaacc ttgaagactt cgttgcccgc
    12001 catcgtcaga tgaattgaat tctctggatt cacgcggtcg gcgtttggca gcgtcagcaa
    12061 ttcaccataa ctaccgtcgg catgcagatg ggtggagatg attcccggct cttcagaagc
    12121 agccagcacc gcagcgcccg cgccatcgcc aaaaataata atagtcccac gatctgttgg
    12181 atcgcaggtg cgcgccagta catcggaacc gacgaccaga gcatacttca ccgccccaga
    12241 tttcacgtat tgattggcta cgcttaatgc ataggtgaaa cctgcgcagg ctgctgcaac
    12301 gtcaaatgcc gggcaacctt taatgcccaa catgctttga atctgacaag ctgcgctcgg
    12361 gaaagcgtgc gtagcagaag tcgttgccac aacgatcagg ccaatctggt ctttctcaat
    12421 gcccgccatc tcaattgcgc gtgtcgccgc ttcaaagccc atggttgaaa cggtttcgtt
    12481 tggcgcggca atgtggcgtt cgcggatacc ggtacgagtg acaatccact cgtcagaggt
    12541 gtccaccatt ttttccaaat cggcgtttgt ccgcacttgt tcgggcagat agctgccagt
    12601 accaataatc ttcgtataca tgtacgctca gtcacttttc ggttatatac cgtcacttgc
    12661 aaactgcgag ttcgctggca gcgtcctgct accgcagagt tccgcttttg ccaccgtcca
    12721 gcagctcaaa accagctggg tatacagatt ccaggcgagc ggcaattcgc tgaggaactt
    12781 gtcgctgcac cgcctgcact gcctgttcaa tcgcgaccgc aaaagctcgc tgattggctg
    12841 caccatgact ttttatcacc gtgccgcgca atcctaacag acaggcgccg ttatactggt
    12901 cggggttgag gtgactgaat cgcctcgtca ggctcttttg tagccaacgc tttaataaca
    12961 gtagccacca cgaccgtttt ttcccttcac cctgagattt cagcagagaa aggaacatcc
    13021 tgacaacacc ttccatcgtc tttaacgtga catttcctgt aaagccgtca caaaccagca
    13081 catctgtctt gccagttaac aactcattgg cttcaagata gccgatataa ttgatagaag
    13141 ggattgtttt aagcaccgct gaggcatccc gaatactgtc gagacccttt acttcttctt
    13201 caccaatatt gagcaacgcc acgcgaggat tgggaatttc caccacctct tcagccagaa
    13261 ctgagcccat aatggcaaat tgcaccaaca ttgtgctgtc acaatcgacg ttggccccta
    13321 aatcgaggac caccgttttg cccttttgct gatgtggtaa taccgtcacc agcgccggac
    13381 gctcaatccc ctccaggggc ctgagtaata attttgccag ccccatcagt gccccggtat
    13441 taccggcact gacacaggct tgcgctcgac cttctttcac cagctccagg gccatacgca
    13501 ttgaactccc acgactagcg cggatagctt gcgaaggccg ggcatcactg gcgataactg
    13561 actgcgcagg aataatctgc agacgcgaac gttgttcaaa gtcagcttta gcaagtaatg
    13621 gcgtgatggc gtcgggattg ccgactaaaa gaagagtgag ttgcgaatta gaattcagtg
    13681 cctgcaatgc tgcaggcact gtcacggaag ggccaaaatc ccctcccatg acatctaacg
    13741 ccagggttag acgtgtcaag gtatcgtcgc cgcccggttt ggtctttccc cagttgcctg
    13801 gggaaaatcc tcactaagct tcatcacgca gacgcgtgat tacttagcga tgaccttgcg
    13861 gccgcggtag taaccgtcgg cagtgatatg gtgacgcagg tgtttttcac cagaagtttt
    13921 gtctacagac aggctggtga ctgcggtcag cgcgtcatgg gaacgacgca tgccacgttt
    13981 ggaacgggtt ggtttattct gttgtacggc catggacctt actcctcaat tacggtttat
    14041 ccccgatcca acggggagca ccaattactt acgctttaag ctggctaata cggcaaatgg
    14101 gtttggcttt tgcacttctt caggcagttc accaaagacc atgtccgctt cggacacttc
    14161 acagtgttca gaatcatgca ccggaactac cggcaaggcg aggatgattt catcttcaac
    14221 cattgcaagc agatcgattt caccgaattc gttaacctca atcggttcat acgcttccgg
    14281 cagtgcttca gcctgttcgt ctgaacgcac aggactaaaa caatacgttg tgtagacctg
    14341 atgagtaaac ggcttcccgc aacgctgaca ctcgagcgtt accgtcacct tcgcatcgcc
    14401 gtttaacact gcgagacgtt ggttatcgat agcgaacgac atggagcatt ccacatcact
    14461 gtccacactg actacggatt cggcgacgcg ctcaacctga tcaggggtat agataccctg
    14521 gtaatcaagg cgtttttgag ccgtacgaac cggatcgaga gtcaggggta attttacctt
    14581 ttgcataggg cgcgcatatt aactttgtaa cgtcatagag tcaaagaaaa aggcagcctg
    14641 tggttgcctt ttgccaataa ttcgcacaca ttgcgggtta ctgctttatt ttcgttcagt
    14701 gctgataacg aacatcaacc tgcaaaacga agcgcatagt ttaaaatggc tatcatcaat
    14761 acgctatatc tgatggaaaa aaatatgcct aaacttattt tagcctccac ctcgccatgg
    14821 cgtcgcgctc ttctggaaaa actgcaaatc tcttttgaat gtgcagcacc agaggtcgac
    14881 gaaaccccac gcagcgacga atcaccgcga cagttggtgc ttcgactggc acaagaaaaa
    14941 gcgcaatctc tggcgtcacg ttatccggat catttaatta ttggttcaga ccaggtatgt
    15001 gttcttgatg gcgaaatcac cggtaaaccg ttaacggaag aaaatgcccg tctgcaatta
    15061 cgcaaagcca gcggcaatat cgtcaccttc tatactggac tggcgttgtt taattcggcg
    15121 aatgggcatc tacaaacaga agtggagcct tttgacgtcc atttccgtca cctgtgcgag
    15181 gcggagattg ataattacgt gcgtaaggag catcccctgc actgcgcggg tagctttaag
    15241 agtgaaggat ttggcattac gctgtttgag cgtttagagg gacgtgaccc taacacgctg
    15301 gttggtttac cgctaatcgc gctgtgtcag atgttacgtc gggaagggaa aaacccgctg
    15361 atgggatagt tgtttgcgcc ggatgcggtt acgtcgcatc cggcaatcgg tgcaggcggc
    15421 ctgatgcggc gtaaacgcct tatcaggcca accgcccatt atcaggctta tatgcttgta
    15481 ttagcgcgcg ttacgcagct tttgcaaaca acgcttcaaa ccttcatcca tcggcgcttc
    15541 gatacgcatc acctcaccgg tccccggatg ggtaaacttc aacgctgcgg cgtgcaggaa
    15601 cagacgattt aatcccgtgc ctgcttcagt gagctgtctg tcaaattcac ggtcaccgta
    15661 gcgatcgtca aaggcaatcg gatgacccgc atactgtgta tgcacacgga tctgatgagt
    15721 acgtccggtt accgggctac aacgcaccag ggtggcaaat gcatagcgtt cttccacttt
    15781 aaagcgtgtt tccgacggtt tgccttcctg actgacacgc acgatacgtt cgccgctttg
    15841 cagaatattt ttcaataacg gcgcttgaac gctcttcaca tgcgactgcc actgactgcg
    15901 caccagcgcc aggtaatctt tttgcattcc tttttcacgt aattgctcat gcagagaacg
    15961 caacgccgag cgttttttcg ctaccagcaa cacacctgaa gtgtcccggt cgagacgatg
    16021 aaccagttca aggaaccgcg cttccgggcg caacgcccgc aaaccttcga taacgccgaa
    16081 gcttaaacca ctgccgccat gtaccgccgt accggaaggt ttattcagca ccaggatatg
    16141 atcatcttca tataagatga cgtccgccag cgccgccacc ttttgcagat gtggcgaaac
    16201 cgcctcttct tcccgctcag caacgcgaac cggtgggata cgcacctcat cacccgcttc
    16261 gagtttatat tcaggcttaa tacgtttttt gttcacccgc acttcgcctt tacgcaaaat
    16321 acggtaaatc atactttttg gtacgccttt caattgggta cgcaaaaagt tgtcgatacg
    16381 ttgccccgct tcgtcagcgg tgatagcaac aatttttacg gatggagtct ctgttttcat
    16441 ggtgggcgat tctaattagc caacaggatt cgcgccactc atttttctat gcttatattt
    16501 agttttacac cttattactt cactacgtga tcactttatt gatggttatt aaaccaatca
    16561 ccagcaagaa gtgaaaaatg taatgaacgc atcccacaca attaaacacg gagcagtatg
    16621 atggttaaaa gggtgaaact ggcaggtgtg gagcctcgca gatttccggc atcatagtgc
    16681 ccaatacggg atgcataaag ctccctcaga ctggagactc cacaaatgaa atatacaccg
    16741 gttggcgttg
//
LOCUS       DAJVSY010000087        16606 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.087, whole genome shotgun sequence.
ACCESSION   DAJVSY010000087 DAJVSY010000000
VERSION     DAJVSY010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16606
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.087"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(28..2217)
                     /locus_tag="OQQ19_002544"
                     /pseudo
     CDS             complement(28..2217)
                     /locus_tag="OQQ19_002544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416896.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing phosphodiesterase"
     gene            complement(2426..2501)
                     /locus_tag="OQQ19_002545"
     tRNA            complement(2426..2501)
                     /locus_tag="OQQ19_002545"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2466..2468),aa:Ala,seq:ggc)
     gene            complement(2541..2616)
                     /locus_tag="OQQ19_002546"
     tRNA            complement(2541..2616)
                     /locus_tag="OQQ19_002546"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2581..2583),aa:Ala,seq:ggc)
     gene            2837..3196
                     /locus_tag="OQQ19_002547"
     CDS             2837..3196
                     /locus_tag="OQQ19_002547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311301.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding transcriptional regulator"
                     /protein_id="HCS1804127.1"
                     /translation="MFKERMTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKA
                     RLVHVNEQVREYIRNAERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLL
                     REGIIGLLQRLGIRDSK"
     gene            3198..3590
                     /locus_tag="OQQ19_002548"
     CDS             3198..3590
                     /locus_tag="OQQ19_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416898.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding transcriptional regulator"
                     /protein_id="HCS1804128.1"
                     /translation="MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGG
                     RARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGVRAPAYRQIINAIDNMTD
                     IEQEKVAQFLSREGIRNFLARLDIDESA"
     gene            complement(3641..5056)
                     /gene="gltX"
                     /locus_tag="OQQ19_002549"
     CDS             complement(3641..5056)
                     /gene="gltX"
                     /locus_tag="OQQ19_002549"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HCS1804129.1"
                     /translation="MKIKTRFAPSPTGYLHVGGARTALYSWLFARNHGGEFVLRIEDT
                     DLERSTPEAIEAIMDGMNWLSLEWDEGPYYQTKRFDRYNAVIDQMLEEGTAYKCYCSK
                     ERLEALREEQMAKGEKPRYDGRCRHSHEHHADDEPCVVRFANPQEGSVVFDDQIRGPI
                     EFSNQELDDLIIRRTDGSPTYNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALK
                     APVPVYAHVSMINGDDGKKLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEI
                     FTREEMIKYFTLNAVSKSASAFNTDKLLWLNHHYINALPPEYVATHLQWHIEQENIDT
                     RNGPQLADLVKLLGERCKTLKEMAQSCRYFYEDFAEFDADAAKKHLRPVARQPLEVVR
                     DKLAAITDWTAENVHHAIQATADELEVGMGKVGMPLRVAVTGAGQSPALDVTVHAIGR
                     TRSIERINKALAFIAERENQQ"
     gene            5316..5391
                     /locus_tag="OQQ19_002550"
     tRNA            5316..5391
                     /locus_tag="OQQ19_002550"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5349..5351,aa:Val,seq:tac)
     gene            5436..5511
                     /locus_tag="OQQ19_002551"
     tRNA            5436..5511
                     /locus_tag="OQQ19_002551"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5469..5471,aa:Val,seq:tac)
     gene            5558..5633
                     /locus_tag="OQQ19_002552"
     tRNA            5558..5633
                     /locus_tag="OQQ19_002552"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5591..5593,aa:Val,seq:tac)
     gene            5638..5713
                     /locus_tag="OQQ19_002553"
     tRNA            5638..5713
                     /locus_tag="OQQ19_002553"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5671..5673,aa:Lys,seq:ttt)
     gene            5833..6174
                     /locus_tag="OQQ19_002554"
     CDS             5833..6174
                     /locus_tag="OQQ19_002554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlxA-like family protein"
                     /protein_id="HCS1804130.1"
                     /translation="MATISSTSIPSIQTQSSNRASQGSDVASQIARISQQIIKLTQQI
                     KEIVDTSGSAEDKQKQAELIQQQITLLETQLAQLQKQQAEKAQEKEQRLSLDVSLLNP
                     VEKTTHIDIYI"
     gene            complement(6165..7091)
                     /locus_tag="OQQ19_002555"
     CDS             complement(6165..7091)
                     /locus_tag="OQQ19_002555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1804131.1"
                     /translation="MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENH
                     TGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQT
                     ISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCE
                     AILSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQAN
                     IVQEIGHPATLFPMVAAGIGISILPALALPLPEGSPLVVKRITPVVERQLMLVRRKNR
                     SLSTAAEALWDVVRDQGNALMAGREGDPLYQI"
     gene            7181..8179
                     /locus_tag="OQQ19_002556"
     CDS             7181..8179
                     /locus_tag="OQQ19_002556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter"
                     /protein_id="HCS1804132.1"
                     /translation="MKLFRILDPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIAL
                     LFFMHGAKLSREAIIAGGGHWRLHLWVMCSTFVLFPILGVLFAWWKPVNVDPMLYSGF
                     LYLCTLPATVQSAIAFTSMAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNVHGAGGS
                     LEQVGKIMLQLLLPFVLGHLSRPWIGDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVN
                     GIWHKVGWGSLLFIVVVSCVLLAIVIVVNVFMARRLGFNKADEITIVFCGSKKSLANG
                     IPMANILFPTSVIGMMVLPLMIFHQIQLMVCAVLARRYKRQTEQLQAQQESSADKA"
     gene            complement(8176..8394)
                     /locus_tag="OQQ19_002557"
     CDS             complement(8176..8394)
                     /locus_tag="OQQ19_002557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3820 family protein"
                     /protein_id="HCS1804133.1"
                     /translation="MEKEQLIEIANTIMPFGKYKGRRLIDLPEEYLLWFARKDEFPAG
                     KLGELMQITLLIKTEGLTQLVQPLKRPL"
     gene            complement(8396..10411)
                     /gene="ligA"
                     /locus_tag="OQQ19_002558"
     CDS             complement(8396..10411)
                     /gene="ligA"
                     /locus_tag="OQQ19_002558"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HCS1804134.1"
                     /translation="MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRE
                     LETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL
                     KNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH
                     GENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKR
                     PLTFFCYGVGVLEGGELPDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEED
                     RPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRT
                     GAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVL
                     SERPEDTREVVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMD
                     VDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTF
                     ARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAE
                     ESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVEL
                     GAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGS"
     gene            complement(10482..11468)
                     /gene="zipA"
                     /locus_tag="OQQ19_002559"
     CDS             complement(10482..11468)
                     /gene="zipA"
                     /locus_tag="OQQ19_002559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HCS1804135.1"
                     /translation="MMQDLRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRPLKRM
                     KSKRDDDSYDEDVEDDEGVGEVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPR
                     QPVQQPPEAQVPPQHAPRPAQPVQQPVYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPA
                     QQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKEAVIIMNVAAHHGSELNGELLLNSIQQ
                     AGFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYG
                     DELQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDANA"
     gene            11698..12459
                     /gene="cysZ"
                     /locus_tag="OQQ19_002560"
     CDS             11698..12459
                     /gene="cysZ"
                     /locus_tag="OQQ19_002560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate transporter CysZ"
                     /protein_id="HCS1804136.1"
                     /translation="MVSSFTSAPRSGFYYFAQGWKLVSQPGIRRFVILPLLVNILLMG
                     GAFWWLFTQLDVWIPTLMSYVPDWLQWLSYLLWPLAVISVLLVFGYFFSTIANWIAAP
                     FNGLLAEQLEARLTGATPPDTGIFGIMKDVPRIMKREWQKFAWYLPRAIVLLILYFIP
                     GIGQTVAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKEMRTALRTRKITNMQFGALTSL
                     FTMIPLLNLFIMPVAVCGATAMWVDCYRDKHAMWR"
     gene            12644..13615
                     /gene="cysK"
                     /locus_tag="OQQ19_002561"
     CDS             12644..13615
                     /gene="cysK"
                     /locus_tag="OQQ19_002561"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HCS1804137.1"
                     /translation="MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCR
                     IGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRK
                     LLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPE
                     IWEDTDGQVDVFIAGVGTGGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGE
                     EIKPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGA
                     AVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKELQQ"
     gene            13999..14256
                     /gene="ptsH"
                     /locus_tag="OQQ19_002562"
     CDS             13999..14256
                     /gene="ptsH"
                     /locus_tag="OQQ19_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003038086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein Hpr"
                     /protein_id="HCS1804138.1"
                     /translation="MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASA
                     KSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE"
     gene            14301..16028
                     /gene="ptsI"
                     /locus_tag="OQQ19_002563"
     CDS             14301..16028
                     /gene="ptsI"
                     /locus_tag="OQQ19_002563"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-protein phosphotransferase
                     PtsI"
                     /protein_id="HCS1804139.1"
                     /translation="MISGILASPGIAFGKALLLKEDEIVIDRKKISADQVDQEVERFL
                     SGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADA
                     AAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKIIDLSAIQDEVILVA
                     ADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYL
                     ILDAVNNQVYVNPTNEVIDKMRAVQEQVASEKAELAKLKDLPAITLDGHQVEVCANIG
                     TVRDVEGAERNGAEGVGLYRTEFLFMDRDALPTEEEQFAAYKAVAEACGSQAVIVRTM
                     DIGGDKELPYMNFPKEENPFLGWRAIRIAMDRKEILRDQLRAILRASAFGKLRIMFPM
                     IISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLAKEVDFFS
                     IGTNDLTQYTLAVDRGNDMISHLYQPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGD
                     ERATLLLLGMGLDEFSMSAISIPRIKKIIRNTNFEDAKVLAEQALAQPTTDELMTLVN
                     KFIEEKTIC"
     gene            16069..16578
                     /gene="crr"
                     /locus_tag="OQQ19_002564"
     CDS             16069..16578
                     /gene="crr"
                     /locus_tag="OQQ19_002564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015833547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HCS1804140.1"
                     /translation="MGLFDKLKSLVSDDKKDTGTIEIIAPLSGEIVNIEDVPDVVFAE
                     KIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE
                     GFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLPGSVTVG
                     ETPVIRIKK"
BASE COUNT         4196 a         4275 c         4073 g         4062 t
ORIGIN      
        1 gataattccc cggttttttt acgcctgtta atcagctaat ggctgcgggc gaccaatcaa
       61 atacccttgc agatattgca ccccgagctt atgcaatagc gcctgctgct gttgcgtctc
      121 gacaaactcc gcgaccacac tcaatgactt cgctttcgcc agatcggtaa ttgatctcac
      181 aatcatcgca tccagcgtgt tcgtgacaat atctttcaca aagacgccat caattttgat
      241 gatatcagcc tgcaaacgct ttaaccgttc gtagttggca tagccggtgc caaagtcatc
      301 aatcgcaatc cggaaaccaa acttatgcag ctgctcgatg ttgtacatgc tgctttctgc
      361 gttagaaaac gcctgctcct cggtgatctc aagaatgacc gcctgcgggg agatgtgata
      421 acgcttaaac agacgaataa tccgcccggc aatattcttt tgcagcagcg tgagcggcat
      481 taaattgact gaaaagcgcg gtcctttttt gtcgcaaggg tgtgttgcca gccacttcaa
      541 caaggattcc agcacttgca aatcaaaacg cgcgctaagg ttaaactgag caataagggg
      601 cagaaactta tccggggtca taatgccgcc gtcatatttc agtcgcgcga ggatctcatc
      661 ataaccttca ccctctttgt tgcgaattgg ctgggcgtag agcagcaaat caccctgatc
      721 taacgccgtg cgaatggtat tcagcaatag cacctgttta gtggtctgcc cggaaaccat
      781 ctcctctctg ctatccagcg ccagcacatg atgatgtgcg caggattgct ccgccagcca
      841 gcttaactgc cccaacaagg gttgcagggt ttcctgattt ccatcaaaac gcccccaggc
      901 agcaccatag cccatatcca gcccggtatt gttccagtga atttgccgac tattcaggat
      961 gttaaccata tgctggagtc gcccttccgt ttccggcccg ctcagcacta acagcagttc
     1021 actacccggc aattgataca acttttcgtt ttcctgcatc aacggcagca gcgtacggca
     1081 aattgagcgg atacagtgaa cgcgcatcat taagccgtaa tgacgactca taaactcaag
     1141 attatcaatg cgcaggcagc aaaaactctt gcccgcctct tgctccggcg cttgttccaa
     1201 cgcacggaag ttgggcagga gcgttaacgg atcggtcagc gcctgcaaat gccagcggcg
     1261 attaagccat tcactgcgat gataaatgcg caccatatag agcaggcaaa cgctaaagga
     1321 aatcagcacc gcaagaataa atgccagcga atattcggtt tccacccctt gcaaaaagtt
     1381 ctggttgtaa ttcagaaggc aaagcgttga aacagcccag gtgagattta aaaacggata
     1441 gcgaagctta ccgaccccga gggtaaagat gatgaagaaa acgggtacca ggtaaccggc
     1501 aataaagtcg ttttcataag gtgtgcacaa cagaagtaga agcacgctta acgctgccag
     1561 ccagcttaag gtaaatgcgc gtttctcttt gcccaacgac ggcgcgatat ccctgcgcca
     1621 caatatctgc gcaaagtggg gacttacaat catgcgagtg agatagtaga aaagcatgtt
     1681 gtaaatcagc acagcggtga aaaggcttag caaatcaacg accgtgaaaa tggcatccgc
     1741 atcgccgaaa aaggtggata tctttagcgg gaaatcaaag aagctcccca caagatacat
     1801 gctgcatttg atgccgatcg gcgtcaccaa accaagccag aacagacgtt gccagacata
     1861 tcggctggtc aatccataac gccaacgcgt ccccagctgc cagcgtaata ttgcgcaggc
     1921 acacaacacg acaaacgtct ggctaccgag catgaccgca gtctataaaa aagagagatg
     1981 aaagttccac agattggtgc aaaacatccc gcataaaacg ggaacgacac ctcgccagcc
     2041 aaagataaac aagattgaca gcattacgca cagtggcatc cacgccagaa agatataact
     2101 ggaatggata atggcaagtg gcgaaataaa acgggatagc tgaataagta ccacggtgag
     2161 cgtaaacgct agtgtgaata tcttgatatt ttttatcagg ttatgctcca caaacatgag
     2221 tacactactc tcactgatcg gagttttcag gcacacaaat aataagttta ttcgcatcgc
     2281 gaagcaaaca gggggccagc ctgttgccga tttttcatcc aatgatgctt tcaccaggcg
     2341 gcactaaccc ggacgtagac tgtattacaa aagcggcaaa aagcagagac aaaaaacccc
     2401 cgctttgcag cgagggttgg aaatttggtg gagctaagcg ggatcgaacc gctgacctct
     2461 tgcatgccat gcaagcgctc tcccagctga gctatagccc cacgatgcgt ttacgtacca
     2521 aatttgctgg gtgcaaaatt tggtggagct aagcgggatc gaaccgctga cctcttgcat
     2581 gccatgcaag cgctctccca gctgagctat agccccgtca cgtaaagctt gtcgagttga
     2641 cgggcggcat catatgaatt ccgcccgaat gtgtcaacgg caaattgcaa cgtgtagttt
     2701 caatcgctga aaaatcaggc aaatgaacaa ttttggaaaa ccgctcgcat tcagtagtta
     2761 ttcatgtcac ggtttcctgt aaagtggtgt tataaaatga actactaata gacccacata
     2821 cattcaggga attgttatgt tcaaggagag gatgacacca gatgaacttg ccagactgac
     2881 cggctatagc cgccagacca ttaataaatg ggtacgcaag gaaggctgga caacgtcacc
     2941 aaaacctggc gtccagggtg gcaaagcccg actggttcac gtcaatgaac aggttcgtga
     3001 atatattcgc aatgctgaac gtccagaagg tcagggagaa gcgcctgccc tttctggtga
     3061 tgcgccgctt gaagtattgc tggtgacact ggcgaaagag atgacgccag ttgaacaaaa
     3121 acagtttaca tccttgcttc tgcgggaagg gattatcgga ttgttacaac gcttagggat
     3181 tcgcgatagc aaataatatg aaaagattac gcaataaaat gaccaccgaa gaactggctg
     3241 aatgcctcgg tgtggctaaa caaactgtta accgttggat cagagaaaaa ggctggaaaa
     3301 cggaaaaatt tcccggcgtg aaaggcggtc gtgccagact tattctggtc gatacgcaag
     3361 tttgcgagtt tattcagaac acgccagcct tccataacac accaatgttg atggaagctg
     3421 aagagagaat tgctgaatac gctcctggag tacgcgcccc ggcgtatcga caaatcatca
     3481 acgcgataga taatatgaca gacattgagc aggaaaaagt cgcgcaattt ttgtcacgtg
     3541 aaggaattcg caatttcctc gcccgtctcg atattgacga atcagcataa ataaaaaacg
     3601 gcaggatatt atctcctgcc gtttatcttt tatgcgctaa ttactgctgg ttttcgcgtt
     3661 cagcaataaa agccagcgct ttgttgatac gctcaatact gcgggtccta ccaattgcgt
     3721 gaacggtaac atccagtgcc ggagactgcc ccgcaccggt tacggcgaca cgcagcggca
     3781 taccaacttt acccataccc acttccagct catccgccgt cgcctgaata gcgtgatgaa
     3841 cgttttcagc ggtccagtca gtaatcgcgg ccagtttgtc acgaaccact tccagcggct
     3901 gacgcgctac cggacgcaga tgttttttcg cggcgtcggc atcgaactca gcaaaatctt
     3961 cgtagaaata acggcagctc tgtgccatct ctttcagcgt cttgcagcgt tcgcccagca
     4021 gtttcaccag atcagccagc tgcgggccgt tacgggtatc gatattttcc tgctcaatgt
     4081 gccactgtaa gtgagtagca acatactccg gcggcagcgc gttaatgtag tgatggttca
     4141 gccacagcag cttgtcggtg ttgaacgcac tggcagattt gctgacggca ttcagggtga
     4201 agtatttgat catctcttca cgagtgaaga tttcctgatc gccgtgggac cagcccagac
     4261 gcaccagata gttcagcagt gcttctggca aataaccgtc atcacgatac tgcattacgc
     4321 tgaccgcccc gtgacgtttg gacagttttt taccgtcatc gccgttgatc atagaaacgt
     4381 gcgcgtaaac cggcaccggc gctttcaggg ccttaagaat gttgatctgg cgtggcgtgt
     4441 tgttgatatg gtcttcgcca cggataacgt gggtgatttc catatcccag tcatcgacaa
     4501 ccacacagaa gttataggtt ggggaaccat cggtacggcg aataataaga tcgtccagtt
     4561 cctggttgct gaactcgatc ggaccacgga tctgatcgtc aaaaacaaca gaaccttcct
     4621 gcgggttagc aaaacgtaca acgcacggtt catcatcagc gtgatgctca tggctgtggc
     4681 ggcagcgacc gtcataacgc ggcttctcac ctttcgccat ttgctcttcg cgcagcgctt
     4741 ccaggcgctc tttagagcaa tagcatttat aagcagtgcc ctcttccagc atctgatcga
     4801 tcaccgcgtt gtagcgatca aaacgtttgg tctggtagta cggaccttca tcccactcca
     4861 ggctcagcca gttcatgcca tccataatgg cttcgatagc ttccggcgtg gaacgctcaa
     4921 gatcggtgtc ttcaatacgc agcacgaact caccgccgtg gttacgtgca aaaagccagg
     4981 agtaaagggc agtacgcgcg ccgccaacgt gcagatagcc tgttgggctt ggcgcgaagc
     5041 gagttttgat tttcatgaaa tggccttacg tttagaaaga tgccgacaac cggcaaatcc
     5101 tggaaaaatt gagtgggcga tattctatca ctcccgcctg attcctcaat gtagttcggg
     5161 tttctacctt acgcattatt gttttcgttg acaaattgcg caacacggtc tattttgcga
     5221 tcatcttgct taaatttacg acgaacgaac aatttcttta gaaaatgcgt tgactcattt
     5281 tgaactctcc ctataatgcg accccacaca gcggggggtg attagctcag ctgggagagc
     5341 acctccctta caaggagggg gtcggcggtt cgatcccgtc atcacccacc aactacttta
     5401 tgtagtctcc gccgtgtagc aagaaattga gaagtgggtg attagctcag ctgggagagc
     5461 acctccctta caaggagggg gtcggcggtt cgatcccgtc atcacccacc actttctcac
     5521 cagctaaatt tcttgtaaca atgtgaagta ccgaagtggg tgattagctc agctgggaga
     5581 gcacctccct tacaaggagg gggtcggcgg ttcgatcccg tcatcaccca ccacttcggg
     5641 tcgttagctc agttggtaga gcagttgact tttaatcaat tggtcgcagg ttcgaatcct
     5701 gcacgaccca ccaatgtaaa aaagcgccct aaaggcgctt ttttgctatc tgcgatttgt
     5761 aagattgatt tttcttctca agttccttgt tcttctaccg atattacctc gtacagtgac
     5821 gaggactgaa caatggccac tatctcttca acttcaattc cttccataca aacacagagt
     5881 agtaacaggg catcacaagg tagcgatgtt gcttcacaaa tcgcgcggat aagtcagcaa
     5941 atcatcaaac tcactcaaca aattaaagag attgtagaca ctagcggcag tgctgaagac
     6001 aagcaaaaac aggccgaatt gattcaacag caaatcaccc tactggaaac acaactggcg
     6061 cagttgcaga aacagcaggc agaaaaggcg caggagaaag agcagcgttt gtctctggat
     6121 gtatcccttc taaatcctgt tgaaaaaacg actcatatcg atatctatat ctgatacaac
     6181 ggatcccctt cccgaccagc cattagcgca ttgccctggt ctcgtaccac gtcccataac
     6241 gcttcagcgg cggtggaaag tgaacggttc ttcctgcgca ccagcatcaa ctggcgttca
     6301 acaaccggcg taatgcgctt taccaccagt gggctacctt caggcaatgg tagcgccagt
     6361 gcgggaagaa tactgatgcc gatgcctgcg gctaccatcg ggaacagcgt cgccggatgt
     6421 ccaatctcct gcacaatatt cgcctgaata ccattgcgcg ccagcgctgc gtcaatcagc
     6481 ggtcggctgc ctgacgcgta atcctgcaac accaatttcg ctccctgtaa tgcctgccag
     6541 ggtacataat cttccacggc caaagcgcta tcgcgatggc aaagcagaaa gaaaggctcg
     6601 gaaagaatcg cttcacattg cagatcgccc actgggcctg gatcgatgac gatgccaaag
     6661 tcgacatctc cctggcgaat actttccatc acccactgct gcggacgatc gtgcaggaca
     6721 aactgaatat ctggatagcg gcgatggctt tcagcaatgc attgcggaat aagatgcgcg
     6781 gaaatggtct ggctggcagc gacccgaact tttccgctca gttgttgccc catacgcccg
     6841 gtatcgcgca acgtgctgtt aagttcatcc agcagtcgct caagacgcaa agccaactgc
     6901 tgccctgcat ctgtaagcac cacttcacgc gtggttctgt ccagcaggcg aacaccagta
     6961 tgattttcca gctccttcac actgtgactt actgccgact ggctcaagcc gatacgctct
     7021 cctgcacgac taaaactttt ctcctgcgct actgtgacga aaacctttaa ttgttttaaa
     7081 gaataattca tctgttttct tcatgaatgg atgcaataaa tcaattttat ttctcaaact
     7141 ggaagaagca caatagaacc atcgatcatc tggagtcttt atgaaacttt ttcgtatcct
     7201 cgatcctttc accttaaccc tgatcacggt ggtgttgctg gcctctttct ttccggccag
     7261 aggcgatttc gtccccttct ttgaaaatct gaccaccgca gctattgccc tgctgttctt
     7321 tatgcacggc gcgaagttgt cgcgtgaggc gattattgct ggcggtggtc actggcgact
     7381 gcatttgtgg gtaatgtgca gcaccttcgt gctgtttccg attctgggtg tactgtttgc
     7441 ctggtggaaa ccggtaaatg tcgacccgat gctctactcc ggttttctct acttgtgcac
     7501 tctcccggct accgtgcagt ctgcaatcgc cttcacgtca atggcgggcg gtaacgtcgc
     7561 ggcggcggtt tgttctgcgt cagcatccag cctgctggga attttccttt caccattgct
     7621 ggttggtctg gtgatgaatg ttcacggtgc agggggcagc cttgagcagg tcggtaaaat
     7681 tatgctgcaa ctgctgctgc cgtttgtgtt ggggcatctt tcccggccgt ggattggtga
     7741 ctgggtgtcg cgcaataaaa aatggattgc gaaaactgac cagacgtcca ttctgttggt
     7801 ggtttataca gcgttcagcg aagccgtcgt taatggtatc tggcataaag ttggctgggg
     7861 atcattgctg tttatcgtgg tggtcagctg cgttcttctg gctatcgtga ttgtagttaa
     7921 cgtctttatg gcacgccgac tgggcttcaa taaggcagat gaaattacta tcgtcttttg
     7981 tggttcgaaa aagagtctgg caaatggcat cccgatggca aacattctgt tccccacatc
     8041 ggtgatcggt atgatggtgc tgcccctgat gattttccat cagatccaat tgatggtctg
     8101 tgcggtgctg gcgcgtcgat acaaacgcca gaccgaacag ttacaggcgc agcaggaaag
     8161 cagcgccgat aaagcttaaa gcggacgctt caggggctgg accagttgcg tcagcccctc
     8221 ggttttaatc agcagcgtga tttgcattag ctcaccgagc ttccctgccg ggaactcatc
     8281 tttgcgggca aaccacagca gatactcctc cggcaggtcg attaagcgac gccctttgta
     8341 tttgccaaac ggcattatcg tattggctat ttcaatcagc tgctcttttt ccatctcagc
     8401 tacccagcaa acgcagcatt tccgcttcgt cgatgacttc aatgcccagt tcctgcgcct
     8461 tcgccagttt agatcctgca gcttcacccg caatcaccag atcggttttc ttcgacacgc
     8521 tgcccgcgac tttcgcgccc agttcgacca gtcgagcttt agcgtcatca cgcgacatct
     8581 ggcttaagct gcccgtaagc accacggttt taccagcaaa cgggctgtca atctcttccg
     8641 cgttgataac gatcggcgca ggccagtgaa caccttccgc caacagctcg ctgatgacat
     8701 tgcggttgct ttcttcggca aagaagttgt gaacgtggga tgcaacgaca atgccaacat
     8761 caggcacctt ttgcagctct tcaatcgaag cggcttccag cgcttccagc gtgccgaaat
     8821 atgccgccag acctgctgcg gtggcctcgc cgacttcacg gatgccaagt gcatagagga
     8881 agcgagcaaa ggtggtttct ttcgcttttt ccagcgcgtt aaccacgttt tgtgccgatt
     8941 ttggccccat acgctccagt ccggtcagtt tgcctgcggt gagtttgaac agatctgccg
     9001 gagtgtggac atattctttt tcaaccagct gatcgatgat tttgtcgccc attccgtcaa
     9061 catccatcgc acggcgggaa acaaagtgtt tcagcgactc tttacgctgc gcaccgcaaa
     9121 tcaggccacc ggtacagcgg gcaaccgctt caccttccac acgctcaacg tcagaaccac
     9181 ataccggaca atgcgtcggg aatacaacct cacgggtatc ttccgggcgt tcagaaagca
     9241 cgacgttaac cacctgcggg atcacgtcgc cagcgcggcg aatcaccact ttatcgccaa
     9301 tgcgtaaacc aagacgttcg atttcatccg cattgtgtaa ggttgcgtta ctcaccagca
     9361 cgccagcaac atggacaggt tccagacgcg caacaggcgt aatcgcgcca gtacgcccaa
     9421 cctgaaactc gacgtcacgc acaaaggtca tctgctcctg cgccgggaat ttaaacgcta
     9481 ccgcccagcg cggggcacgc gcgacaaagc caagctgctc ctgctgttcc agtgagttga
     9541 ccttaatcac cacgccgtcg atatcaaagc ccagcgtcgg gcggtcttct tccactttgt
     9601 gatagaacgc cagcacttct tccgccgatt cacaaagcgt tacccgatcg ctgaccggca
     9661 acccccactt tttaaattgc agtaaacggc caagatgagt atccggcagc tcgccacctt
     9721 ccagaacacc aacgccatag cagaaaaaag tgagcggtcg cttcgctgta atacgcggat
     9781 caagctgacg cagtgaacca gctgccgcat tacgtgggtt agcaaaaact ttcccgcccg
     9841 tgcgtcgcgc atcttcgtta atcttttcga accccgcctg cggcaggaac acttcaccac
     9901 gcacttccag acgcgccggg atattctctc catgcagctt cagcggaatg gcgcgaatag
     9961 tacgcacatt agacgtgata tcttccccgg tggtgccatc gccacgggtc gcggcactga
    10021 ctaaaacgcc attttcatac agaatactga cggcaaggcc atccagcttc agctcacagc
    10081 accaggtgac tttctcgttg tttttcagac ggtcctgcac acgtttgttg aaagcaagaa
    10141 agctttcttc atcaaaaacg ttatccagtg acagcattgg tacttcatgg cgtatctggc
    10201 tgaaagccgc cagcggcgca gcacctacac gttgggtagg cgaatcaggc gtaatcagtt
    10261 ctggatgttt agtttccagc tcgcgcagtt cgcgcatcag cctgtcgtat tcagcgtcgg
    10321 gaatttccgg cgcatccatc acatgataaa gatattcatg atggcgaagc gtcgttcgca
    10381 gttctgtcag ttgttgttcg attgattcca tatcgcacca tcaatgctaa aaacccccga
    10441 caagcggggg ttcgaagaag agttaatttg ccttaagtgt atcaggcgtt ggcgtctttg
    10501 acttcgcgga tgatgtcctg gtactcgcgc aatttctgcg gagtcatcat acggcgctga
    10561 tcgtcaagca cgacaccgcc cacttcatcg gcaatatgct gcgcagattg cagcatcagc
    10621 ttgaagttct gcagctcgtc accgtaagac ggtacctgca taaagatagt gacacccgga
    10681 gtagtgaaat ccttcatttc aggatcaaag gttcccggtt tcaccatatt cgccaggctg
    10741 aataacgccg ggccgctgcc atccgggcta agatgacgat ggtaaatatt catatcgcca
    10801 aaaatgaagc ccgcttgttg aatgctgtta agaagcagtt caccgtttag ctcgctaccg
    10861 tgatgcgccg cgacgttcat gataatcacc gcttctttgc gcttcggttt atccataact
    10921 ggagccggtt ccgctacagg ctcaggctgt ggtgccgcta cgggttctgc aggctggaaa
    10981 gcctgttgtg ccggttgcgg tgctgaatgc acaggctgcg gcgctggcgc gacctgtggc
    11041 gaaactggct gctgcaacgg ctgttcaggc tgcggctgat agacaggctg ctgcaccggc
    11101 tgcgctggac gcggagcatg ttgcggcggt acctgcgctt caggcggctg ctggaccggt
    11161 tgacgcggct gcgcagacgc ataaggcggt tggtactggt gttgcggcga cggacgagca
    11221 gcctcatgct cctgagcgtt agccggggca tgattcacgc ggtgaacacg aacctcacca
    11281 acgccctcat catcttcgac atcctcgtca taagaatcgt cgtcacgttt tgacttcatt
    11341 cgttttaatg gccgatcgcg gaacatagaa gatcgttctt tacggctggt ccagaaacca
    11401 tgtaccagta aagcgattat ggcgatcgcg ccaacaatga ttaatatcag acgcaaatcc
    11461 tgcatcatta tattctctgt tgttctaaca ccttgccacc acggcaaaca tttactcact
    11521 aagagtattt gccgattacc tcaagtgcaa gtgcactatt aactttcaca gcacaaagat
    11581 agatgaaatc gtgctttttg ctgttttttc gaacatatcc taactgtcca ttgcgcaatt
    11641 acccggtaaa atacgcagaa ttttcctagg attggtcaaa aggagctcat cctgattatg
    11701 gtttcatcat tcacatctgc cccacgcagc ggtttttact attttgcgca aggctggaag
    11761 ctcgtctcgc aacctgggat tcggcgtttc gttattttac cgctgctggt caatattttg
    11821 ttgatggggg gcgcattctg gtggctcttt acacagctcg atgtctggat cccgactctc
    11881 atgagttacg ttccggactg gctacaatgg ctgagttatc tgttgtggcc tctggctgtc
    11941 atctctgtgc tgttagtgtt tggctatttc ttctccacga ttgctaactg gattgccgct
    12001 ccgtttaacg gtttattggc tgaacaactg gaagcacgat tgactggcgc tacaccgcca
    12061 gataccggga ttttcggtat catgaaagat gtgccgcgaa tcatgaaacg cgaatggcaa
    12121 aaatttgcct ggtatctgcc gcgcgcaatt gtattactaa ttctttactt catccctggt
    12181 attgggcaaa ccgtcgcgcc ggtactgtgg ttcctgttta gcgcctggat gttagccatc
    12241 cagtattgcg attacccctt cgataaccac aaagtgccgt ttaaagagat gcgcaccgcc
    12301 ctgcgcacac gcaaaatcac caatatgcag tttggtgctt taaccagcct gtttacgatg
    12361 atcccgctgc ttaatctgtt catcatgccc gttgccgttt gtggcgcgac ggcgatgtgg
    12421 gtcgattgct atcgcgataa acacgcgatg tggcggtaac aatctaccgg ttattttgta
    12481 aaccgtttgt gtgaaacagg ggtggcttat gccgcccctt attccatctt gcatgtcatt
    12541 atttcccttc tgtatataga tatgctaaat ccttacttcc gcatattctc tgagcgggta
    12601 tgctacctgt tgtatcccaa tttcatacag ttaaggacag gccatgagta agatttttga
    12661 agataactcg ctgactatcg gtcacacgcc gctggttcgc ctgaatcgca tcggtaacgg
    12721 acgcattctg gcgaaggtgg aatctcgtaa ccccagcttc agcgttaagt gccgtatcgg
    12781 tgccaacatg atttgggatg ccgaaaagcg cggcgtgctg aaaccaggcg ttgaactggt
    12841 tgaaccgacc agcggtaata ccgggattgc actggcctat gtagctgccg ctcgcggtta
    12901 caaactcacc ctgaccatgc cagaaaccat gagtattgaa cgccgcaagc tgctgaaagc
    12961 gttaggtgca aacctggtgc tgacggaagg tgctaaaggc atgaaaggcg caatccaaaa
    13021 agcagaagaa attgtcgcca gcaatccaga gaaatacctg ctgctgcaac aattcagcaa
    13081 tccggcaaac cctgaaattc acgaaaaaac caccggtccg gagatctggg aagataccga
    13141 cggtcaggtt gatgtattta ttgctggcgt tgggactggc ggtacgctga ctggcgtcag
    13201 ccgctacatt aaaggcacca aaggcaagac cgatcttatc tctgtcgccg ttgagccaac
    13261 cgattctcca gttatcgccc aggcgctggc aggtgaagag attaaacctg gcccgcataa
    13321 aattcagggt attggcgctg gttttatccc ggctaacctc gatctcaagc tggtcgataa
    13381 agtcattggc atcaccaatg aagaagccat ttctaccgcc cgtcgtctaa tggaagaaga
    13441 aggtattctt gcaggtatct cttctggagc agctgttgcc gcggcgttga aactacaaga
    13501 agatgaaagc tttaccaaca agaatattgt ggttattcta ccatcatcgg gtgagcgtta
    13561 tttaagcacc gcattgtttg ccgatctctt cactgagaaa gaattgcaac agtaatgcca
    13621 gcttgttaaa aatgcgtaaa aaagcacctt tttaggtgct tttttgtggc ctgcttcaaa
    13681 ctttcgcccc tcctggcatt gattcagcct gtcggaactg gtatttaacc agactaatta
    13741 ttttgatgcg cgaaattaat cgttacagga aaagccaaag ctgaatcgat tttatgattt
    13801 ggttcaattc ttcctttagc ggcataatgt ttaatgacgt acgaaacgtc agcggtcaac
    13861 acccgccagc aatggactgt attgcgctct tcgtgcgtcg cgtctattaa aaactggcgc
    13921 taacaataca ggctaaagtc gaaccgccag gctagacttt agttccacaa cactaaacct
    13981 ataagttggg gaaatacaat gttccagcaa gaagttacca ttacagctcc gaacggtctg
    14041 cacacccgcc ctgctgccca gtttgtaaaa gaagctaagg gcttcacttc tgaaattact
    14101 gtgacttcca acggcaaaag cgccagcgcg aaaagcctgt ttaaactgca gactctgggc
    14161 ctgactcaag gtaccgttgt gactatctcc gcagaaggcg aagacgagca aaaagcggtt
    14221 gaacatctgg ttaaactgat ggcggaactc gagtaatttc ccgggttctt ttaaaaatca
    14281 gtcacaagta aggtagggtt atgatttcag gcattttagc atccccgggt atcgctttcg
    14341 gtaaagctct gcttctgaaa gaagacgaaa ttgtcattga ccggaaaaaa atttctgccg
    14401 accaggttga tcaggaagtt gaacgttttc tgagcggtcg tgccaaggca tcagcccagc
    14461 tggaaacgat caaaacgaaa gctggtgaaa cgttcggtga agaaaaagaa gccatctttg
    14521 aagggcatat tatgctgctc gaagatgagg agctggagca ggaaatcata gccctgatta
    14581 aagataaaca catgacagct gacgcagctg ctcatgaagt tatcgaaggt caggcttctg
    14641 ccctggaaga gctggatgat gaatacctga aagaacgtgc ggctgacgta cgtgatatcg
    14701 gtaagcgcct gctgcgcaac atcctgggcc tgaagattat cgacctgagc gccattcagg
    14761 atgaagtcat tctggttgcc gctgacctga cgccgtccga aaccgcacag ctgaacctga
    14821 agaaggtgct gggtttcatc accgacgcgg gtggccgtac ttcccacacc tctatcatgg
    14881 cgcgttctct ggaactgcct gctatcgtgg gtaccggtag cgtcacctct caggtgaaaa
    14941 atgacgacta tctgattctg gatgccgtaa ataatcaggt ttacgtcaat ccaaccaacg
    15001 aagttattga taaaatgcgt gctgttcagg agcaagtggc ttctgaaaaa gcagagcttg
    15061 ctaaactgaa agatctgcca gctattacgc tggacggtca ccaggtagaa gtatgcgcta
    15121 acattggtac ggttcgtgac gttgaaggtg cagagcgtaa cggcgctgaa ggcgttggtc
    15181 tgtatcgtac tgagttccta ttcatggacc gcgacgcgct gcccactgaa gaagaacagt
    15241 ttgctgctta caaagcagtg gctgaagcgt gtggctcgca ggcggttatc gttcgtacca
    15301 tggacatcgg cggcgacaaa gagctgccat acatgaactt cccgaaagaa gagaacccgt
    15361 tcctcggctg gcgcgctatc cgtatcgcga tggatcgtaa agagatcctg cgcgatcaac
    15421 tccgcgctat cctgcgtgcc tcggctttcg gtaaattgcg cattatgttc ccgatgatca
    15481 tctctgttga agaagtgcgt gcactgcgca aagagatcga aatctacaaa caggaactgc
    15541 gcgacgaagg taaagcgttt gacgagtcaa ttgaaatcgg cgtaatggtg gaaacaccgg
    15601 ctgccgcaac aattgcacgt catttagcca aagaagttga tttctttagt atcggcacca
    15661 atgatttaac gcagtacact ctggcagttg accgtggtaa tgatatgatt tcacaccttt
    15721 accagccaat gtcaccgtcc gtgctgaact tgatcaagca agttattgat gcttctcatg
    15781 ctgaaggcaa atggactggc atgtgtggtg agcttgctgg cgatgaacgt gctacacttc
    15841 tgttgctggg gatgggtctg gacgaattct ctatgagcgc catttctatc ccgcgcatta
    15901 agaagattat ccgtaacacg aacttcgaag atgcgaaggt gttagcagag caggctcttg
    15961 ctcaaccgac aacggacgag ttaatgacgc tggttaacaa gttcattgaa gaaaaaacaa
    16021 tctgctaatc cacgagatgc ggcccaattt actgcttagg agaagatcat gggtttgttc
    16081 gataaactga aatctctggt ttccgacgac aagaaggata ccggaactat tgagatcatt
    16141 gctccgctct ctggcgagat cgtcaatatc gaagacgtgc cggatgtcgt ttttgcggaa
    16201 aaaatcgttg gtgatggtat tgctatcaaa ccaacgggta acaaaatggt cgcgcctgta
    16261 gacggtacca ttggtaaaat ctttgaaacc aatcacgcgt tctctatcga atctgatagc
    16321 ggcgttgaac tgttcgtcca cttcggtatc gacaccgttg aactgaaagg cgaaggcttc
    16381 aagcgtattg cagaagaagg tcagcgcgtg aaagttggcg atactgtcat tgaatttgat
    16441 ctgccgctgc tggaagagaa agccaagtct accctgactc cggttgttat ctccaacatg
    16501 gacgaaatca aagaactgat caaactgccc ggtagcgtaa ccgtgggtga aaccccggtt
    16561 atccgcatca agaagtaatt cttgccgcag tgaaaaatgg cgccca
//
LOCUS       DAJVSY010000088        16540 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.088, whole genome shotgun sequence.
ACCESSION   DAJVSY010000088 DAJVSY010000000
VERSION     DAJVSY010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16540
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.088"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(59..223)
                     /locus_tag="OQQ19_002565"
                     /pseudo
     CDS             complement(59..223)
                     /locus_tag="OQQ19_002565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001280578.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
     gene            complement(302..396)
                     /locus_tag="OQQ19_002566"
     tRNA            complement(302..396)
                     /locus_tag="OQQ19_002566"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(360..362),aa:Sec,seq:tca)
     gene            689..2071
                     /locus_tag="OQQ19_002567"
     CDS             689..2071
                     /locus_tag="OQQ19_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418114.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside-pentoside-hexuronide family
                     transporter"
                     /protein_id="HCS1804141.1"
                     /translation="MKSEVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPA
                     GFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPD
                     LSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM
                     LSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTTSMR
                     EDLRDIWQNDQWRIVGLLTIFNILAVCVLGGAMMYYVTWILGTPEVFVAFLTTYCVGN
                     LIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQL
                     VTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDA
                     AEKAQNSATISIIIALFTIVPAICYLLSAIIAKRYYSLTTHNLKTVMEQLAQGKRRCQ
                     QQFTSQEVQN"
     gene            2081..4372
                     /gene="yicI"
                     /locus_tag="OQQ19_002568"
     CDS             2081..4372
                     /gene="yicI"
                     /locus_tag="OQQ19_002568"
                     /EC_number="3.2.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-xylosidase"
                     /protein_id="HCS1804142.1"
                     /translation="MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRER
                     TWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAE
                     FKSGNLSARVSKGEFWSLDFLRNGERITGQDTNNQRNYMFERLDLGVGETVYGLGERF
                     TALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQSVSFEVGSEKVSK
                     VQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEAT
                     VNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKIC
                     VWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADK
                     LKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAHIYNELVWNVLKDTVGEE
                     EAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHYIGGFEN
                     TAPAHVYKCWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYR
                     EAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEG
                     RWTHLWHNDELDGRCWHKQQHSFLSLPIYVRDNTLLALGNNDQRPDYAWHEGTAFHLF
                     NLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQD
                     GSQAESEQGLVVKPQGNALTITL"
     gene            complement(4425..6134)
                     /locus_tag="OQQ19_002569"
     CDS             complement(4425..6134)
                     /locus_tag="OQQ19_002569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HCS1804143.1"
                     /translation="MKFIGKLLLYILIALLVVIAGLYFLLQTRWGAEHISAWVSENSD
                     YHLAFGAMDHRFSAPSHIVLENVTFGRDGQPATLVAKSVDIALSSRQLTEPRHVDTIL
                     LENGTLNLTDQTAPLPFKADRLQLRDMAFNSPNSEWKLSAQRVNGGVVPWSPKAGKVL
                     GTKAQIQFSAGSLSLNDVPATNVLIEGSIDNDRVTLTNLGADIARGTLTGNAQRNADG
                     SWQVENLRMADIRLQSEKSLTDFFAPLRSVPSLQIGRLEVIDAHLQGPDWAVTDLDLS
                     LRNMTFSKDDWQTQEGKLLMNASEFIYGSLHLFDPIINAEFSPQGVALRQFTSRWEGG
                     MVRTSGNWLRDGKTLILDDAAIAGLEYTLPKNWQQLWMETTPGWLNSLQLKRFSASRN
                     LIIDIDPDFPWQLTTLDGYGANLTLVTDHKWGVWSGSANLNAAAATFNRVDVRRPSLA
                     LTANSSTVNISELSAFTEKGILEATASVSQTPQRQTHISLNGRGVPVNILQQWGWPEL
                     PLTGDGNIQLTASGDIQANAPLKPTVSGQLHAVNAAKQQVTQTMNAGIVSSGEVTSAE
                     LVQ"
     gene            complement(6255..7646)
                     /gene="xanP"
                     /locus_tag="OQQ19_002570"
     CDS             complement(6255..7646)
                     /gene="xanP"
                     /locus_tag="OQQ19_002570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine/proton symporter XanP"
                     /protein_id="HCS1804144.1"
                     /translation="MSVSTLESENAQPVAQTQNSELIYRLEDRPPLPQTLFAACQHLL
                     AMFVAVITPALLICQALGLPAQDTQHIISMSLFASGVASIIQIKTWGPVGSGLLSIQG
                     TSFNFVAPLIMGGTALKTGGADVPTMMAALFGTLMLASCTEMVISRVLHLARRIITPL
                     VSGVVVMIIGLSLIQVGLTSIGGGYAAMSDNTFGAPKNLLLAGVVLALIILLNRQRNP
                     YLRVASLVIAMAAGYALAWFMGMLPESNEPMTQELIMVPTPLYYGLGIEWSLLLPLML
                     VFMITSLETIGDITSTSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCF
                     GQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIA
                     ASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPLILQFAPEWLKNLLSSGIAAGGIT
                     AIVLNLIFPPEKQ"
     gene            7926..9131
                     /gene="gltS"
                     /locus_tag="OQQ19_002571"
     CDS             7926..9131
                     /gene="gltS"
                     /locus_tag="OQQ19_002571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/glutamate symporter"
                     /protein_id="HCS1804145.1"
                     /translation="MFHLDTLATLVAATLTLLLGRKLVHSVSFLKKYTIPEPVAGGLL
                     VALALLVLKKSMGWEVNFDMSLRDPLMLAFFATIGLNANIASLRAGGRVVGIFLIVVV
                     GLLVMQNAIGIGMASLLGLDPLMGLLAGSITLSGGHGTGAAWSKLFIERYGFTNATEV
                     AMACATFGLVLGGLIGGPVARYLVKHSTTPNGIPDDQEVPTAFEKPDVGRMITSLVLI
                     ETIALIAICLTVGKIVAQLLAGTAFELPTFVCVLFVGVILSNGLSIMGFYRVFERAVS
                     VLGNVSLSLFLAMALMGLKLWELASLALPMLAILVVQTIFMALYAIFVTWRMMGKNYD
                     AAVLAAGHCGFGLGATPTAIANMQAITERFGPSHMAFLVVPMVGAFFIDIVNALVIKL
                     YLMLPIFAG"
     gene            complement(9165..11246)
                     /gene="recG"
                     /locus_tag="OQQ19_002572"
     CDS             complement(9165..11246)
                     /gene="recG"
                     /locus_tag="OQQ19_002572"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HCS1804146.1"
                     /translation="MTGRLLDAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRY
                     EDRTHLYPIGELLPGVYATVEGEVLNCNISFGGRRMMTCQISDGSGILTMRFFNFSAA
                     MKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQ
                     ATLRKLTDQALDLLDTCAIEELLPPELSQGMMTLPEALRTLHRPPPTLQLSDLETGQH
                     PAQRRLILEELLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARV
                     VAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHA
                     NNFRNWFEPLGIEVGWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLA
                     LVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE
                     LPPGRTPVTTVAIPDTRRTDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATW
                     EELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMI
                     IENPERLGLAQLHQLRGRVGRGAVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQ
                     KDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRLARHIHERYPQQAKALIER
                     WMPETERYSNA"
     gene            complement(11252..11941)
                     /gene="trmH"
                     /locus_tag="OQQ19_002573"
     CDS             complement(11252..11941)
                     /gene="trmH"
                     /locus_tag="OQQ19_002573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(18)-2'-O)-methyltransferase
                     TrmH"
                     /protein_id="HCS1804147.1"
                     /translation="MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVG
                     VHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNA
                     VDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE
                     AQRQRQNAGMYLRENSMLPEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEAD
                     ADWWATMQAAG"
     gene            complement(11948..14056)
                     /gene="spoT"
                     /locus_tag="OQQ19_002574"
     CDS             complement(11948..14056)
                     /gene="spoT"
                     /locus_tag="OQQ19_002574"
                     /EC_number="3.1.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GTP
                     diphosphokinase/guanosine-3',5'-bis pyrophosphate
                     3'-pyrophosphohydrolase"
                     /protein_id="HCS1804148.1"
                     /translation="MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEP
                     YITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSK
                     LDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIAR
                     ETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILS
                     EIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSDTCYRV
                     LGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMG
                     VAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFT
                     PEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPG
                     ARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLNEIPQENI
                     QRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQHGDASIPPATQSHGHLPIKGADGV
                     LITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETAQE
                     FITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEKDGRVYSAFIRLTARDRVHLA
                     NIMRKIRVMPDVIKVTRNRN"
     gene            complement(14075..14350)
                     /gene="rpoZ"
                     /locus_tag="OQQ19_002575"
     CDS             complement(14075..14350)
                     /gene="rpoZ"
                     /locus_tag="OQQ19_002575"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013511051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HCS1804149.1"
                     /translation="MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEND
                     KTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR"
     gene            complement(14405..15028)
                     /gene="gmk"
                     /locus_tag="OQQ19_002576"
     CDS             complement(14405..15028)
                     /gene="gmk"
                     /locus_tag="OQQ19_002576"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000046969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HCS1804150.1"
                     /translation="MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP
                     RPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLD
                     IDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHY
                     DEYDYLIVNDDFDTALTDLKTIIRAERLRMSRQKQRHDALISKLLAD"
     gene            15286..>16540
                     /gene="ligB"
                     /locus_tag="OQQ19_002577"
     CDS             15286..>16540
                     /gene="ligB"
                     /locus_tag="OQQ19_002577"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418104.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigB"
                     /protein_id="HCS1804151.1"
                     /translation="MKVWMAILISILCWQSSVWAVCPAWSPARAQEEIFRQQQQIKQW
                     DDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPRDVMMPPLNGAVMHPVAHTGVRK
                     MADKNALSLWMRERSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSL
                     ISAVPQTVSGPLANSTLQGEIFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSL
                     GVFVWAWPDGPQLMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAELPFVT
                     DGVVVRAAKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLA
                     SVMLDDKKVQRVNIGSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTP
                     PENRFNSLTCYFASDVCQEQFISRLV"
BASE COUNT         3756 a         4227 c         4495 g         4062 t
ORIGIN      
        1 aatagtcgta taaaaaaggg tgttatggag cgtgtaaaac aacatcttca ccttaatggc
       61 gatacagttg gctgagagcc agcagggggc aaatcacctg caaataaaca cggcacatgc
      121 tggcgcgcat atcgcggatg cgttcgagga cagaagaacc gacaggcgga ttcttcagcc
      181 gctcatcgtc catcacaaaa ccttagacca ggtattcctg aagccgattg aatattgagc
      241 agtagaaaat atctggattg acagtattac aaggggttgg agaacgtcag aagaggcatt
      301 ttggcggaag atcacaggag tcgaacctgt ccgggaccgc tggcggcccc aactggattt
      361 gaagtccagc cgcctcaccg gagacgacga tcttccgcgc ctcgattgct acatggaggc
      421 ggggcgcatt atagctactt ccttgagttt ctacatcccc cagatcagtt ttttccgcct
      481 aatacacgca gcgtattatc acgaaagcat tatagttcat ataaaactca tattttacaa
      541 tgacatatga gcggaattaa cgctaccacg atcacataaa acaagaatca taaattaata
      601 accagatatc ggaatattcg ctctcacagg gatggtttac aaaatgcgtt atcggtctca
      661 gcacccctat agcatcaagg aaaagcagat gaagagtgaa gtgttgtccg ttaaagagaa
      721 aattggttat ggcatgggag acgccgccag ccacattatt ttcgataacg taatgttata
      781 tatgatgttc ttttataccg atatttttgg cattcctgcc ggttttgtcg gaaccatgtt
      841 tttggtcgct cgtgcactgg atgcgatttc cgatccttgc atggggttgt tggccgatcg
      901 aacgcgctct cgctggggta aatttcgtcc gtgggtactg tttggcgcac tgccattcgg
      961 gatcgtctgt gtactggcct atagcacgcc agatctcagt atgaacggca aaatgatcta
     1021 tgcagcaatt acttacaccc tacttacctt actttatacc gtcgtcaata tcccttactg
     1081 cgcattgggt ggtgtaatca ccaatgaccc gactcagcgt atctcgctgc aatcctggcg
     1141 ttttgtgctg gcgaccgcgg gaggcatgct ttctactgtt ctgatgatgc cactggttaa
     1201 tttaattggc ggtgataata aaccactcgg tttccagggc ggtatcgcgg tcctttccgt
     1261 ggtggcattc atgatgctgg cattttgttt cttcaccact aaagaacgcg ttgaagcacc
     1321 acctacaaca acgtctatgc gggaagattt acgtgatatc tggcaaaacg accagtggcg
     1381 gattgtcggt ttactaacca ttttcaatat cctggcggtg tgcgtactcg gtggggcgat
     1441 gatgtattac gtcacatgga ttttgggcac gccggaagtg tttgtcgctt ttctcaccac
     1501 ttattgcgtg ggtaacctga ttggttccgc actggcaaaa cctctgaccg actggaaatg
     1561 taaagtcact atcttctggt ggacgaacgc cctgctggca gtgattagcc tcgcgatgtt
     1621 ctttgttccc atgcaggcca gcatcactat gtttgtcttc atcttcgtga ttggtgtgtt
     1681 gcatcaactg gtgacaccta tccagtgggt aatgatgtcc gataccgtcg actacggcga
     1741 gtggtgcaat ggtaaacgcc tgaccgggat cagttttgct ggcacgctgt ttgtgctcaa
     1801 actggggttg gccttcggcg gcgctcttat cggctggatg ctggcttatg gcggatatga
     1861 tgcggcagaa aaagcgcaga acagcgccac gattagcatc attattgcgc tattcacgat
     1921 tgttccggcg atctgttatt tgctgagcgc gattatcgct aaacgctact actcactcac
     1981 gacgcacaat ctgaaaaccg ttatggaaca gctggctcag ggtaaacgcc gttgccagca
     2041 acaattcacc tctcaagaag tgcagaacta aggaacggca atgaaaatta gcgatggaaa
     2101 ctggttgatt caacctggcc tcaatttgat tcacccgctt caggtgttcg aggttgaaca
     2161 gcaggataat gaaatggtgg tctatgctgc cccccgtgat gtgcgtgaac gtacctggca
     2221 gcttgatacg cctttattta cgctgcgctt tttctcccca caggaaggta ttgtcggtgt
     2281 gcggattgag cattttcagg gagcgctgaa taacggtcct cattatccgc tcaatatttt
     2341 gcaggacgtg aaggtcacaa tcgaaaacac agaacgttat gctgagttta aaagtggcaa
     2401 cttaagcgcg cgtgtcagca aaggtgagtt ctggtcactc gattttctgc gcaacggtga
     2461 acgtattacc ggtcaggaca cgaataatca acgaaattat atgtttgagc ggcttgatct
     2521 tggcgttggc gaaacagttt atggtctggg agagcgtttt actgccctgg tgcgcaatgg
     2581 tcagacggta gagacctgga accgggacgg cggcacaagt actgaacagg cgtataaaaa
     2641 tatcccgttc tatatgacta accgtggcta tggggtgctg gtcaatcacc cccagagtgt
     2701 ctcttttgaa gtgggatcgg agaaagtctc caaagtgcag ttcagcgttg agagcgaata
     2761 tctcgaatac tttgttatcg acggtccgac gccgaaagcg gtacttgatc gttatacccg
     2821 ttttactggt cgtccggcgc tgccgcccgc atggtccttc ggcctgtggc taaccacttc
     2881 atttaccacc aactacgacg aagcgacggt aaacagcttt atcgatggta tggcggaacg
     2941 caatctgccg ctgcatgttt tccactttga ctgtttctgg atgaaagcct tccagtggtg
     3001 cgattttgag tgggacccgc tgactttccc ggacccggaa gggatgatcc gccgcctgaa
     3061 agcgaaaggg ctgaaaatct gcgtctggat taacccctat atcggtcaaa aatcccccgt
     3121 ctttaaagag ttacaagaga aaggctattt actcaaacgc ccggacggtt cgctatggca
     3181 gtgggataaa tggcagccag gtctggcgat ttatgacttt accaatccgg atgcctgcaa
     3241 atggtacgcc gacaaactga aaggtctggt cgcgatgggc gttgattgct ttaagaccga
     3301 ctttggcgaa cgtatcccaa ctgatgttca gtggtttgac ggttccgatc cgcagaaaat
     3361 gcataaccat tatgcgcaca tctacaacga actggtgtgg aacgtgctca aggacaccgt
     3421 tggtgaggaa gaagctgtct tgtttgcccg ctcggcctcc gtcggtgcgc agaaattccc
     3481 ggtacactgg ggtggcgatt gttacgctaa ctacgaatca atggcggaaa gcctgcgcgg
     3541 tggtttgtct attggccttt caggttttgg cttctggagc cactatatcg gcggctttga
     3601 aaataccgct ccggcgcacg tttacaaatg ctggtgcgcg tttggtttgc tctccagcca
     3661 tagccgttta cacggtagca aatcttatcg tgtgccgtgg gcctacgatg atgagtcctg
     3721 tgatgtggtg cgcttcttca cgcaactgaa atgccgcatg atgccgtatc tgtatcgtga
     3781 agctgcgcgt gcaaacgcgc ggggtacgcc gatgatgcgg gccatgatga tggagttccc
     3841 ggacgatccg gcttgtgatt accttgaccg tcaatacatg ttaggcgaca acgtgatggt
     3901 tgcgccggtg ttcactgaag cgggcgatgt gcagttctac ctgccggaag gtcgctggac
     3961 acacctgtgg cacaacgatg agctcgacgg tcgttgctgg cataaacagc agcacagctt
     4021 cctgagtctg cccatttatg tgcgtgataa caccctactg gcgctgggca acaacgatca
     4081 acgtcccgat tacgcgtggc acgaaggcac ggcattccac ctctttaatc tgcaagacgg
     4141 gcatgaagcc gtctgtgaag tgcccgctgc tgacggatcg gtgatcttta ctttaaaagc
     4201 agcacgtact ggcaacacga ttactgtgac tggtgcgggc gaggcgaaga actggacact
     4261 gtgcctgcgc aatgttgtga aagtaaatgg tctgcaagac ggttcgcagg ctgaaagtga
     4321 gcaggggctg gtggtgaagc ctcaagggaa tgcgctgaca attacgttgt aatctattga
     4381 tggaatgccg ggtacgtctg agtcgtaccc ggcgagattg atgtttactg caccagctct
     4441 gccgacgtaa cttcaccgct ggaaacgatg ccagcattca tggtttgagt cacttgctgc
     4501 tttgcggcgt tcacggcatg caattgcccg ctaaccgtag gtttcagcgg ggcattggcc
     4561 tgaatatctc cactggcggt aagctgaata ttgccgtcgc cagtcaacgg taattcaggc
     4621 catccccatt gttgcaaaat attcaccggc acaccgcgtc cattcaggct gatatgggtc
     4681 tgacgttgtg gcgtttgtga aacactggca gtggcttcca gaatgccttt ttcagtaaat
     4741 gcactcagtt cgctgatatt caccgtgctg ctgttggcgg tcagcgccag cgacgggcga
     4801 cgaacatcaa cacgattgaa tgtcgcggcg gcggcattca gattcgccga gccactccag
     4861 acgccccatt tatgatcggt aaccagcgtc aggttggcac cgtaaccatc gagcgtggtg
     4921 agctgccacg ggaagtcagg gtcgatatca atgatcagat tgcggctggc gctaaatctc
     4981 ttcagttgca ggctgtttaa ccaaccgggt gtcgtttcca tccacaactg ttgccagttt
     5041 ttcggcaagg tatattccag cccggcaatt gccgcatcat caaggatcaa cgttttcccg
     5101 tcacgcagcc agttccctga cgttctgacc ataccccctt cccagcggct ggtgaactgg
     5161 cgcagcgcta cgccctgcgg ggaaaattcc gcgtttataa tcgggtcaaa taaatgcagc
     5221 gaaccataaa tgaactcgct agcgttcatc aacagtttgc cttcttgtgt ctgccagtca
     5281 tctttactga aggtcatgtt gcgcaagctg agatcgaggt cggtcaccgc ccagtccgga
     5341 ccttgcaaat gagcatcgat cacttccagg cgaccaatct gcaacgacgg gacagagcgt
     5401 aatggcgcaa agaagtcggt tagcgatttt tcgctttgta gacgtatatc cgccatgcgc
     5461 aggttttcca cttgccagct gccgtcggcg ttacgctgcg cgtttccggt taatgtcccg
     5521 cgggcgatgt cggcacccag gttagtcagc gtaacgcgat cgttatcaat actgccttca
     5581 atcagtacat tggtggcagg aacatcattg agcgaaagcg atccggcact aaactgaatc
     5641 tgcgccttcg tacccagcac tttaccggct tttggtgacc acggaactac gccgccattt
     5701 acccgctgcg cgctcagttt ccattcgcta ttcgggctat taaacgccat atcacgcagt
     5761 tgcagacgat cggctttgaa cggtagcggc gcggtctggt cggtgagatt cagcgtcccg
     5821 ttttccagca ggatggtatc gacatggcgt ggttcggtca gttgccgact gcttagcgca
     5881 atgtcgacac ttttggccac cagggtcgcg ggctgaccat cacgaccaaa cgtgacattc
     5941 tccagcacga tatgagatgg cgcggaaaaa cggtgatcca tcgccccgaa ggccagatga
     6001 tagtcgctat tctcggaaac ccatgcgctg atatgttctg ctccccagcg ggtttgcaga
     6061 agaaaataga ggccagcgat caccactaac agagcgatga gaatgtagag aagcagcttc
     6121 ccaataaatt tcatggtctt ccattccgtg aaatgcacat aagagagtta tgcacgattt
     6181 acgcgcaatc ctcaaggcgg gaatggtgaa agaggtgaga ctgcggcggt aattatctta
     6241 ccgccgccag tgaattactg tttttctggt gggaaaatca gattcagcac gatggcagta
     6301 ataccgcccg cggcgatccc ggaggagagc aggtttttca gccattcagg ggcaaactgc
     6361 aaaatcagcg gctgctgaga cacgcccaga ccaaccgcca gcgacagcgc gataatcaga
     6421 atcgcccgac ggttcagcgg ctcacgagaa acgatacgca caccggaggc ggcgatggtg
     6481 ccaaacatta caagcgttgc gccgcccaga accggttctg gaatgtgttg tacaaaaccg
     6541 ctcactgccg ggaacagacc cagcacgatc aacatcagcg cgacgacaaa accgacatag
     6601 cggctggcaa caccagtcaa ctggatcact ccgttgtttt gcccgaagca ggagttcggg
     6661 aaggtgttaa acaccgccga aacaaacgag ttcaggccgt ttgccagcac gccgcctttc
     6721 aggcgtttca tgtacagcgg accggacact ggctgttcgg aaacgtcaga ggtcgacgtg
     6781 atatcgccaa tggtttccag cgaagtgatc ataaagacca gcatcagcgg cagcagcaga
     6841 ctccattcaa tgccaagacc gtaatagagc ggcgttggca ccataatcag ttcttgcgtc
     6901 atcggttcgt tgctttctgg caacatgccc ataaaccacg ccagcgcata tccggccgcc
     6961 atcgcaatca ccagtgaggc cacgcgtaag taagggttac gttgacggtt aagcaggata
     7021 attaaggcta agaccacgcc tgccagcagc agatttttcg gtgcgccgaa ggtgttatcg
     7081 ctcatggctg cgtaaccgcc gccaatggac gttaacccaa cctgaattag cgacaggccg
     7141 ataatcatca ccacaacgcc agaaaccagc ggcgtaataa tgcggcgcgc cagatgcaga
     7201 acgcgggaga tcaccatctc ggtgcaactt gccagcatca acgtgccgaa caaagccgcc
     7261 atcatggtag gaacatcagc accaccggtt ttcagcgcgg taccgcccat aatcagcggg
     7321 gcaacaaagt tgaagctggt gccctgaata gacaacagcc cggagccaac cggaccccag
     7381 gtcttaattt gaataatcga tgccacaccg gaggcaaaca gcgacatact aataatgtgt
     7441 tgcgtgtctt gtgccggtaa acccagcgcc tggcagatta atagcgctgg cgtgatcacc
     7501 gcaacgaaca tcgccagcag atgctgacag gcggcaaaca gggtttgagg aagcggcgga
     7561 cgatcttcaa gacggtaaat cagttcgctg ttttgagtct gcgcaaccgg ttgcgcattt
     7621 tctgactcga gggtggaaac agacatcgaa aacaatcccg tggtagcaaa gcgggcattt
     7681 tagctgaccg aaagagaaaa gcaaacgttt gccacatcct catctaaata tttaaatgag
     7741 ataaatgcac ttttttatat aacttttggt atttttctgc ttaaaatcca tgccatttgt
     7801 tcattaacag ctgagaattt gacccaggaa agcataactc gatacccgtc atagttcatg
     7861 aagttgccac tgcgcgatga agtatgacga gtatgaaaga gtgatgcgga tacaaaggag
     7921 taactatgtt tcatctcgat actttagcaa cgcttgttgc cgcaacgctg acgttgctgc
     7981 tcgggcgtaa gttggtccat tccgtctcct ttttgaagaa atacaccata ccggaacctg
     8041 ttgcgggtgg tttgttggtg gcgctggcgc tactagtact gaaaaaaagc atgggctggg
     8101 aagtcaactt tgatatgtcc ctgcgcgatc cgttaatgct ggctttcttc gccaccattg
     8161 gcctgaacgc caacattgcc agtttgcgtg ccggtgggcg tgtggttggc atcttcttga
     8221 ttgtggttgt tggtctgttg gtgatgcaaa atgccattgg cattggtatg gctagcctgt
     8281 tagggcttga tccgctgatg gggctgttgg ccggttctat tacgctttcc ggcggtcacg
     8341 gtacgggcgc tgcgtggagt aaattgttca ttgaacgtta tggcttcacc aatgcgacgg
     8401 aagtggcgat ggcctgtgca acgttcggtc tggtgctggg cggcttgatt ggcggtccgg
     8461 tggcgcgcta tctggtgaaa cactccacca cgccgaacgg tattccggat gaccaggaag
     8521 tcccgacggc gtttgaaaag ccggatgtgg gacgcatgat cacctcgttg gtgctgattg
     8581 aaactatcgc gctgattgct atctgcctga cggtggggaa aattgttgcg caacttttgg
     8641 ctggcactgc ttttgaactg ccgaccttcg tctgtgtact gtttgttggc gtgattctga
     8701 gcaacggtct gtcaataatg ggcttttacc gcgtctttga gcgtgcggta tccgtgctgg
     8761 gtaacgtaag cttgtcgttg ttcctggcga tggcgttgat ggggctgaaa ctgtgggagc
     8821 tggcttcgct ggcgctgccg atgctggcga ttctggtggt acagaccatc ttcatggcgt
     8881 tgtatgccat cttcgttacc tggcgcatga tgggcaaaaa ctacgatgcg gcagtgctgg
     8941 ctgcgggtca ctgtggtttt ggcctcggtg caacgccaac ggcaatcgcc aacatgcagg
     9001 cgatcactga acgctttggc ccgtcgcaca tggcgttttt ggtggtgccg atggtcggtg
     9061 cgttctttat cgatatcgtc aatgcgctgg taattaagtt gtatttgatg ttgccgattt
     9121 ttgccggtta accgatgaag cggcggtctt ctcaccgccg ccttttacgc attcgagtaa
     9181 cgttctgtct ccggcatcca gcgttctatc aaggcttttg cctgttgtgg gtaacgttcg
     9241 tgaatatgtc gcgccaggcg ctgaacttcc gggatcatcg cctgatcgcg cagtaaatcc
     9301 gccactttaa attcagcatt acccgtctga cgcgtgccta acaattcgcc agggccgcga
     9361 atctccagat ctttttgcgc aatcacaaaa ccgtcgttac tgtcgcgcag cacttgcagg
     9421 cgaatttgcg ccgttttaga aagcggcgtt ttgtagagca gcacgcagtg agaagccacc
     9481 gcgccacgac ctacgcgccc gcgcagctgg tgtaactgcg ccagacccag acgctcaggg
     9541 ttttcgataa tcatcaggct ggcgttaggc acatcaacac cgacttcaat aacggtagtg
     9601 gcaaccagca gatgtagctc accttgttta aacgacgcca tcaccgcctg tttctcggct
     9661 ggtttcatcc gcccgtgtac caggccaaca ttcaattctg gtagcgccag tttcaactct
     9721 tcccaggtag cttccgccgc ctgcgcttcc agtaactctg actcttcaat caacgtacaa
     9781 acccagtacg cctgacgacc ttcagttatg caggcatggc gcacgcggtc aatgatgtcg
     9841 gtacggcggg tatcaggaat agcgaccgta gtcactggcg tgcggcctgg cggcagctca
     9901 tctatcaccg aggtatcgag atcggcatac gccgtcattg ccagcgtgcg ggggatcggc
     9961 gtggcggtca tgatcaactg atgcggatgg aagccttgct gctggccttt ctcccataac
    10021 gccagacgct gatgcacgcc aaagcgatgt tgttcgtcga taatcaccag cgccagaccg
    10081 ttaaactgca cctgttcctg gaagatggcg tgcgtaccaa caatcatctg cacctgaccg
    10141 ctggcgatgg cttcctgctg agacagtcgc gctttgcctt tctgcttacc ggcgagccag
    10201 cccacttcga taccgagcgg ttcaaaccag ttgcggaagt tattggcgtg ctgttcggcg
    10261 agtaattcgg ttggtgccat caatgccacc tgtttgccgt gggcaatcgc acgcagcgcg
    10321 gcgagggcgg cgaccagcgt tttaccggaa cctacatcgc cctgtaccag gcgcatcatc
    10381 ggcacatcca gcgccatatc gcgctcgatc tccgccacta cgcgtgcctg tgcgcccgtt
    10441 ggcttgaacg gtaaggctgc gaggagttta tttttcagcg catcattggc gctcagcggc
    10501 tgggcatgaa aacgctgtgc tccggcacgt aaggctaaca tgctgaggtt gtgcgccagc
    10561 agttcttcca gaatcagacg acgttgcgcc ggatgctgcc cggtttccag atcgctaagc
    10621 tgtagcgtcg gtggcgggcg gtgcaaagtg cgcaacgctt ccggtagcgt catcattcct
    10681 tgtgacagtt ccggcggcag gagttcttca atggcgcagg tgtcgagcag atccagcgcc
    10741 tggtcggtta atttacgcag cgtggcctgc tttacgcctt ccgttgttgg ataaaccggc
    10801 gtgagcgttt cctgtaattc tggcgtgctg agatcgccct gcacgcggta ttccgggtgg
    10861 atcatctccg caccatattt accgcgcttt gcttcgccat aagccagtac acggcggccc
    10921 gtcgccaggc tatttttcat tgccgcgctg aaattgaaaa agcgcatggt gaggatgccg
    10981 gaaccgtcgc tgatctggca ggtcatcatc cgccgaccgc cgaaggagat attgcagttc
    11041 agcacttcgc cttccaccgt ggcataaacg cccggcagta gttctccgat ggggtagaga
    11101 tgggtgcgat cttcgtagcg caggggaagg tgtaagagta gatcctgcac ggtatgcagg
    11161 ttgattttcg ccagtttgtt actaagtgct gcgccaacgc ccgttaggga actgagtggg
    11221 acagcatcta acaggcgacc tgtcatggca cttaccctgc agcctgcata gtagcccacc
    11281 agtcggcatc agcttcgatc tcgccttgct gattgacgtg gggataaggc aggcctttgc
    11341 gttttgcgac tttcgccagc accggatagc cgccttcaaa caacaggcgt tgttgctctg
    11401 cttccggcaa catgctgttt tcacgcaggt acatgcctgc attttgccgc tgacgctggg
    11461 cttcgtaaag aatgagggct gaggcaacgg aaacattcag cgactgcacc atgccgatca
    11521 tcggaatgat gatgtcctga tccgccaggg ccaatgcttc ctgcgtgatg cccgttttct
    11581 cctgtcccat caaaatgcag gtcgggcgag tgtaatcaat ttcgcggaaa tcgacagcgt
    11641 tatcagaaag atgggttgcc agaatctgca tgccctggcc tttgagatga gcgacggcat
    11701 cgccaatggt gcggtgtgtt ttcacctgta cccagctgtt actacccgcc gctgccgaag
    11761 ccatggtgcg catgcggcta ccaggccaga cggcgtgaac ttcatgtacg ccaacggcat
    11821 ctgcggtacg aataatcgca gaaacgttat gaggtttgtg gacctgctcc atgcagacgg
    11881 tcagatcagg ctgccgcctg gcgagcattt cgcagatgcg tgcataacgt gttgggttca
    11941 taaaacatta atttcggttt cgggtgactt taatcacgtc tggcatcacg cggattttgc
    12001 gcatgatatt cgccagatgc acacggtcac gagcggtcag acgaataaag gcgctgtaga
    12061 cgcgaccatc tttctcttcc gtattcaaac tttgaatatt cgaagtcgtg gtgttaattg
    12121 ccgccgtcag gtttgccagc gcaccctgat gattgaacat ctccaccttg atttcggtga
    12181 tgaactcctg cgccgtctct ttatcccatt ccacagccat aaacttctct ggctctttct
    12241 ggtagccacg gatgttacgg caggattcat ggtggatcac cagaccttta ccggggctga
    12301 cgtgggcgat aatcgggtcg ccaggaatag ggcggcagca tttcgcaaag gtgatcagca
    12361 cgccatccgc gcctttgatc ggcagatgcc cgtggctttg agtcgccggt ggaatggagg
    12421 cgtccccatg ttgtagattt ttcgcgacca ccacgctcat tgcgttacca aggccgattt
    12481 ctgccagcag atcgtcaagc gttgccagct tcatgcgatc cagctcgcgc tgaatatttt
    12541 cctgcgggat ttcattgagc ttacggctac cacccaaagc atggttgagc agacgacggc
    12601 ccaggcttac agaatcatca cgcttgaggt ttttcagcaa ctgacgaatt ttggcgcgcg
    12661 ctttcgagct aacgacaaag ttcagccaag cggcattcgg gcgagcgccc ggagcggtaa
    12721 tgatttcaac ggtctgaccg ctagtaagcg gctgcgacag cgggtaaggc tggcggtcga
    12781 cgcgtgcgcc cacgcaggca tggccgatat cggtatgcac tgcataagcg aagtcgacgg
    12841 gcgttgcacc ggcaggcagc tcgacaatgc gcccttccgg tgtgaaaacg taaatctcat
    12901 ccgggaagag atcggattta acgctctcga taaattcaaa cgaactaccg gcgctctgtt
    12961 gcagctccag caggctttgc atccagcgct gggcgcgtat ttgtgcggta gtactggttt
    13021 cgccgtgctc tttataagcc cagtgcgcgg caacacccat ctccgccatc tgatccatat
    13081 cttcggtacg gatctggacc tcaaccggca cgccgtgcgg gccaatcatc gaggtgtgca
    13141 acgactgata gccgttcgct tttggaatgg cgatatagtc tttcacgcgg cccggacgcg
    13201 gcttgtacag gctgtgcatc tggcccagca cgcgataaca ggtgtcagaa tcattgacga
    13261 tcacgcggaa agcgtagatg tccatgattg agtgaaaacg ctgctctttg agcaccattt
    13321 tgcagtaaat cgaataaaga tgcttttcgc gaccactgac gcggcacggt attcccgctt
    13381 cctgcaaacg cccttcgatt tcagaaagaa tcttctggat catctcttta cggttgccgc
    13441 gcgcggcttt caccacttct ttgattacgc gataacggtt gggatacagc gcctcaaaac
    13501 ccagctcttc gagttcggtt ttaatgtggt ggatacctaa acggtgcgcc agcgggctgt
    13561 aaatttcgag agtttcacgg gcgatgcggc gacgtttgtc cgggcgaagt gagcccagcg
    13621 tgcgcatgtt gtgggtacgg tcggcaagtt tgatgaggat gacgcggata tcctgcacca
    13681 tcgccataat catcttgcga aagttttcgg cctgcgcctc tttcttatcg cggaacttga
    13741 gtttatcaag tttcgacacc ccctctacca gctcggcgac gcttttacca aaaagctgtt
    13801 ccatatcctg gtaggtggcg ggagtatctt caatcacgtc atgcagcagc gccgccatca
    13861 gcgtttcata gtcgagtttc atctcggcca gaatgcaggc aaccgctacc gggtgcgtga
    13921 tatagggttc accgcttgaa cgtgtttgcc cctcgtgagc atcacgtgca acgagatacg
    13981 cctgccgcag acgcttgatt tggtcttccg gcaggtaggt ttgaatcagt tgattcaggc
    14041 tttcaaacag atacaagggc gacccgcttt gtgattaacg acgaccttca gcaatagcgg
    14101 taacggcttg taattcagcg gcttcctgct cttgctgttc ctggcgttcg cgaacgtcga
    14161 ggatctggtt gttgatcaga ccttcttcga tttcgcgcag cgcgattaca gtggttttat
    14221 cgttttcttc cggtaccagc ggatcctttc cgcctacctg catctgacga gcgcgacgcg
    14281 cggcgaccag taccaggtca aaacggttac caattttctc tacagcgtcc tgaacagtta
    14341 cgcgtgccat acttaaaaag ctccacaggt gaagaaatga ctgggcatga tactgaaatc
    14401 aggttcagtc tgccaacaat ttgctgatta aagcgtcatg acgctgcttt tggcggctca
    14461 tgcgcagacg ttcggcgcga ataatggtct tcaaatcggt caacgcggta tcgaagtcat
    14521 cattcacaat caggtaatca tattcgtcgt aatggctcat ttctgcaaca gcttgcgcca
    14581 tacgctttgc aatgacctct tcgctgtcct gaccgcgacc gcgtagacgg cggtccagtt
    14641 caattttaga cggcggtaaa ataaagatac tccgcgcgtg cggcatcttc tggcgaattt
    14701 gctgcgcgcc ctgccagtcg atatcgagaa aaacatcgac accggtcgcc agtacttgct
    14761 caatggcctc acgcgaagtg ccatagtaat taccaaaaac ttctgcgtgt tcgaggaacg
    14821 catctctgct aatcatttct ttaaattcat catgattaac aaagaaataa tgttcaccgt
    14881 ggacttcacc aggacgcggt tggcgtgtgg tgtgtgaaac agaaacctgg gtgtcataca
    14941 acggttgggt ttttaataaa gcctgaatca ggctggattt acccgcgcca ctgggggcag
    15001 aaacaatata aagcgtgcct tgagccatga gtatctttcg tatgtgatta gcgaaataaa
    15061 gcctacatac gagcttatta tacacggcgc ggccatgtga cgtagccctt gctcacactt
    15121 tttgcgcaaa gttgttgcgt tttgcgtagc tgcttccgca tttgcctgtg atttactgca
    15181 ataaagacga ttctcaggaa gcgtcctcgc agactccgtt tttgccactc ggctttgcct
    15241 tcaccacgtt gtatatctgc cagcctgact acagcggagg tgaagatgaa agtatggatg
    15301 gcgatattaa taagtatctt gtgctggcaa tcatctgtgt gggcggtctg tccggcctgg
    15361 tcgccagcca gagcacagga agaaattttc cgccagcaac agcaaataaa acagtgggac
    15421 gatgactact ggaaggaagg aaaaagtgag gtggaagacg gtgtttacga tcagttaagc
    15481 gcccgtctta cgcagtggca acgctgcttt gtgagcgagc cccgcgacgt gatgatgccg
    15541 cctttaaatg gtgcggttat gcatccggtt gcccatacgg gtgtacgcaa aatggcggat
    15601 aaaaacgcat taagtctgtg gatgcgagaa cgtagcgatc tttgggtgca gccaaaagtt
    15661 gatggcgttg cggtaaccct ggtttatcgg gacgggaaac tgaacaaagc aatcagtcgc
    15721 ggtaatggcc tgaaaggcga ggactggacg cagaaagtta gcttaatttc cgctgtgccg
    15781 caaaccgtta gcgggccttt agccaacagt acgcttcagg gggaaatatt tctccagcgc
    15841 gaggggcata tccaacaaca aatgggggga ataaatgccc gcgcaaaagt tgctggcttg
    15901 atgatgcgcc aggacgatag cgacacgctg aattctctgg gcgtttttgt ctgggcatgg
    15961 ccggatggac cgcagttaat gtctgatcgt ttaaaagagc tggctaccgc aggttttact
    16021 ctaacgcaga cgtatacccg tgcggtgaaa aatgctgatg aagttgcgcg cgtacgcaat
    16081 gagtggtgga aagcggaatt acccttcgtc accgatggcg tagttgtacg agcggcgaaa
    16141 gagccagaat cccgccattg gctaccgggc caggcagagt ggctggtggc ctggaaatat
    16201 caacctgtag ctcaggttgc cgaagtgaag gcgattcagt ttgcggtggg taagagcggt
    16261 aaaatatcgg tggttgcgtc actcgcatct gtcatgctgg atgataaaaa agtccagcgg
    16321 gtgaatattg gttccgtcag gcgctggcag gagtgggata ttgcgcctgg tgatcagatt
    16381 ctcgtcagcc ttgccggtca gggtattcct cgcattgatg atgtggtgtg gcgcggtgca
    16441 gaacgtacaa aaccgacacc gccagaaaac cgctttaact cgttgacctg ctactttgct
    16501 tctgatgttt gtcaggaaca gttcatttca cgcttagtct
//
LOCUS       DAJVSY010000089        16521 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.089, whole genome shotgun sequence.
ACCESSION   DAJVSY010000089 DAJVSY010000000
VERSION     DAJVSY010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16521
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.089"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            95..2323
                     /gene="crfC"
                     /locus_tag="OQQ19_002578"
     CDS             95..2323
                     /gene="crfC"
                     /locus_tag="OQQ19_002578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clamp-binding protein CrfC"
                     /protein_id="HCS1804152.1"
                     /translation="MYTQTLYELSQEAERLLQLSRQQLQLLEKMPLSVPGDDAAQLAL
                     PWSQPNIAERYAMLNNELRKISRLEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPM
                     TALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRAL
                     MQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVE
                     FVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD
                     EEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVS
                     SMWGYLANRARYELANNGKLPAPEQQRWVEDFAHAALGRRWRHADLADLEHIRHAADQ
                     LWEDSLFAQPIQALLHAAYANASLYALRSAAHKLLNYAQQAREYLDFRAHGLNVACEQ
                     LRQNIHQVEESLQLLQLNQAQVSGEIKHEIELALTSANHFLRQQQDALNAQLAALFQD
                     DSEPLSEIRTCCETLLQTAQNTISRDFTLRFAELESTLCRVLTDVIRPIEQQVKMELS
                     ESGFRPGFHFPVFHGVVPHVNTRQLFSEVISHQEATDEQSTRLGVVRETFSRWLNQPD
                     WGRGNEKSPTETVDYSVLQRALSAEVDLYCQQMAKVLAEQVDESVTAGMNTFFAEFAS
                     CLTELQTRLRESLALRQQNESVVRLMQQQLQQTVMTHGWIYTDAQLLRDDIQTLFTAE
                     RY"
     gene            2320..3203
                     /locus_tag="OQQ19_002579"
                     /pseudo
     CDS             2320..3203
                     /locus_tag="OQQ19_002579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418534.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YjcZ-like family protein"
     gene            3467..4969
                     /gene="proP"
                     /locus_tag="OQQ19_002580"
     CDS             3467..4969
                     /gene="proP"
                     /locus_tag="OQQ19_002580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709830.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline transporter ProP"
                     /protein_id="HCS1804153.1"
                     /translation="MLKRKKVKPITLRDVTIINDSKLRKAITAASLGNAMEWFDFGVY
                     GFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAIT
                     IVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRK
                     RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLR
                     HALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKYWRSLLTCIGLVIATNVTYY
                     MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVA
                     LFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAA
                     FNISVLVAGLTPTLAAWLVESSQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGAT
                     PAASDIQEAKEILVEHYDNIEQKIDNIDHEIADLQAKRTRLVQQHPRIDE"
     gene            5035..5172
                     /gene="pmrR"
                     /locus_tag="OQQ19_002581"
     CDS             5035..5172
                     /gene="pmrR"
                     /locus_tag="OQQ19_002581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000797656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LpxT activity modulator PmrR"
                     /protein_id="HCS1804154.1"
                     /translation="MSDAHTLLQVNGGECNEKPCLYESLTTVFSVLVVSSFLYIWFAT
                     F"
     gene            complement(5148..6248)
                     /gene="pmrB"
                     /locus_tag="OQQ19_002582"
     CDS             complement(5148..6248)
                     /gene="pmrB"
                     /locus_tag="OQQ19_002582"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     PmrB"
                     /protein_id="HCS1804155.1"
                     /translation="MNLMRFLRRPISLRQRLILTIGAILLVFELISVFWLWHESTEQI
                     QLFEQALRDNRNNDRHIMREIREAVASLIVPGVFMVSLTLFICYQAVRRITRPLAELQ
                     KELEARTADNLTPIAIHSATLEIEAVVSALNDLVSRLTSTLDNERLFTADVAHELRTP
                     LAGVRLHLELLAKTHHIDVAPLVARLDQMMESVSQLLQLARAGQSFSSGNYQHVKLLE
                     DVILPSYDELSTMLDQRQQTLLLPESAADITVQGDATLLRMLLRNLVENAHRYSPQGS
                     NIMIKLQEDGGAVMAVEDEGPGIDESKCGELSKAFVRMDSRYGGIGLGLSIVSRITQL
                     HHGQFFLQNRQETSGTRAWVRLKKDQNVANQI"
     gene            complement(6249..6917)
                     /gene="basR"
                     /locus_tag="OQQ19_002583"
     CDS             complement(6249..6917)
                     /gene="basR"
                     /locus_tag="OQQ19_002583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BasR"
                     /protein_id="HCS1804156.1"
                     /translation="MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGH
                     YSLVVLDLGLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKP
                     FALEELHARIRALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSR
                     LMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKSRIRTVRGFGYMLVA
                     NEEN"
     gene            complement(6914..8557)
                     /gene="eptA"
                     /locus_tag="OQQ19_002584"
     CDS             complement(6914..8557)
                     /gene="eptA"
                     /locus_tag="OQQ19_002584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418538.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase EptA"
                     /protein_id="HCS1804157.1"
                     /translation="MLKRLLKRPSLNLLAWLLLAAFYISICLNIAFFKQVLQALPLDS
                     LHNVLVFLSMPVVAFSVINIVLTLSSFLWLNRPLACLFILVGAAAQYFIMTYGIVIDR
                     SMIANIIDTTPAESYALMTPQMLLTLGFSGVLAALIACWIKIKPATSRLRSVLFRGAN
                     ILVSVLLILLVAALFYKDYASLFRNNKELVKSLSPSNSIVASWSWYSHQRLANLPLVR
                     IGEDAHRNPLMQNEKRKNLTILIVGETSRAENFSLNGYPRETNPRLAKDNVVYFPNTV
                     SCGTATAVSVPCMFSDMPREHYKEELAQHQEGVLDIIQRAGINVLWNDNDGGCKGACD
                     RVPHQNVTALNLPGQCINGECYDEVLFHGLEEYINNLQGDGVIVLHTIGSHGPTYYNR
                     YPPQFRKFTPTCDTNEIQTCTKEQLVNTYDNTLVYVDYIVDKAINLLKEHQDKFTTSL
                     VYLSDHGESLGENGIYLHGLPYAIAPDSQKQVPMLLWLSEDYQKRYQVDQNCLQKQAQ
                     TQHYSQDNLFSTLLGLTGVETKYYQAADDILQTCRRVSK"
     gene            complement(8661..9998)
                     /gene="adiC"
                     /locus_tag="OQQ19_002585"
     CDS             complement(8661..9998)
                     /gene="adiC"
                     /locus_tag="OQQ19_002585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine/agmatine antiporter"
                     /protein_id="HCS1804158.1"
                     /translation="MSSDADAHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGIAIY
                     GWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNI
                     AMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI
                     PIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVK
                     NPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTPGA
                     IVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILM
                     TIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTT
                     IAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNPYPLDAPISKD"
     gene            complement(10135..10896)
                     /gene="adiY"
                     /locus_tag="OQQ19_002586"
     CDS             complement(10135..10896)
                     /gene="adiY"
                     /locus_tag="OQQ19_002586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator AdiY"
                     /protein_id="HCS1804159.1"
                     /translation="MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNI
                     IDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAA
                     QHSMMPAETESEKERTRALLFTVLSRFLDSKKFLSLMMYMLRNCVSDSVYQIIESDIH
                     KDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQ
                     SCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTVA"
     gene            complement(11221..13488)
                     /gene="adiA"
                     /locus_tag="OQQ19_002587"
     CDS             complement(11221..13488)
                     /gene="adiA"
                     /locus_tag="OQQ19_002587"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418541.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine decarboxylase"
                     /protein_id="HCS1804160.1"
                     /translation="MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDG
                     FAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMD
                     RDLLELVDEFAWILEDTTDFIAGRAVAAMTRYRQQLLPPLFSALMKYSDIHEYSWAAP
                     GHQGGVGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVF
                     GADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSR
                     NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQ
                     DLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALS
                     QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEV
                     IDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQD
                     YWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRH
                     GIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYDANTPLAQVMPELVEQYPD
                     TYANMGIHDLGDTMFAWLKENNPGARLNEAYSGLPVAEITPREAYNAIVDNNVELVSI
                     ENLPGRIAANSVIPYPPGIPMLLSGENFGDKNSPQVSYLRSLQSWDHHFPGFEHETEG
                     TEIIDGIYHAMCVKA"
     gene            complement(13687..14595)
                     /gene="melR"
                     /locus_tag="OQQ19_002588"
     CDS             complement(13687..14595)
                     /gene="melR"
                     /locus_tag="OQQ19_002588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MelR"
                     /protein_id="HCS1804161.1"
                     /translation="MNTDTFMCSSDEKQTRSPLSLYSEYQRMEIEFRAPHIMPTSHWH
                     GQVEVNVPFDGDVEYLINNEKVNINQGHITLFWACTPHQLTDTGTCQSMAIFNLPMHL
                     FLSWPLDKDLINHVTHGMMIKSLATQQLSPFEVRRWQQELNSPNEQIRQLAIDEIGLM
                     LKRFSLSGWEPILVNKTSRTHKNSVSRHAQFYVSQMLGFIAENYDQALTINDVAEHVK
                     LNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKSILDIALTAGFRSSSRFYS
                     TFGKYVGMSPQQYRKLSQQRRQTFPG"
     gene            14878..16233
                     /gene="melA"
                     /locus_tag="OQQ19_002589"
     CDS             14878..16233
                     /gene="melA"
                     /locus_tag="OQQ19_002589"
                     /EC_number="3.2.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HCS1804162.1"
                     /translation="MMTAPKITFIGAGSTIFVKNILGDVFHREALKTAHIALMDIDPT
                     RLEESHIVVRKLMDSAGASGKITCHTQQKEALQDADFVVVAFQIGGYEPCTVTDFEVC
                     KRHGLEQTIADTLGPGGIMRALRTIPHLWQICEDMTEVCPDATLLNYVNPMAMNTWAM
                     YARYPHIKQVGLCHSVQGTAEELARDLNIDPSTLRYRCAGINHMAFYLELERKTADGS
                     YVNLYPELLAAYEAGQAPKPHIHGNTRCQNIVRYEMFKKLGYFVTESSEHFAEYTPWF
                     IKPGREDLIERYKVPLDEYPKRCVEQLANWHKELEEYKNASRIDIKPSREYASTIMNA
                     IWTGESSVIYGNVRNDGLIDNLPQGCCVEVACLVDANGIQPTKVGTLPSHLAALMQTN
                     INVQTLLTEAILTENRDRVYHAAMMDPHTAAVLGIDEIYALVDDLIAAHGDWLPGWLH
                     R"
     gene            16336..>16521
                     /locus_tag="OQQ19_002590"
     CDS             16336..>16521
                     /locus_tag="OQQ19_002590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418544.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1804163.1"
                     /translation="MSISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLV
                     GTLFLVARIWDAINDPIM"
BASE COUNT         3988 a         4002 c         4346 g         4185 t
ORIGIN      
        1 tatttcttgc agtaattata aaagccgaaa acagaactca aaaacaatct ggctaaataa
       61 aagtaacaaa atttgcttta aggaagaatt ttctatgtac acacagaccc tgtatgagtt
      121 aagtcaggag gctgaacgcc tgttacagct ttctcgccaa cagttgcagt tactggaaaa
      181 aatgcctctc tctgtacccg gagacgatgc ggcacaactg gctttaccct ggagtcagcc
      241 taatatcgcc gaacgttacg cgatgctgaa taatgagttg cgtaaaattt cccgactgga
      301 aatggtgctg gcgattgtcg gtactatgaa agcagggaaa tcaaccacca ttaatgccat
      361 tgttggtacg gaggttctgc ctaatcgtaa tcgcccaatg actgcgctgc cgacgcttat
      421 tcgccatacg cccgggcaaa aggaaccggt actgcatttt tcacatgtcg cgccaatcga
      481 ttgtttaatt caacaattac aacagcgcct gcgtgattgc gatattaagc atctgaccga
      541 tgtgctggaa atagataaag atatgcgtgc gcttatgcag cggatcgaaa atggcgtcgc
      601 tttcgaaaaa tattatctgg gtgcccagcc tatttttcat tgtctgaaaa gtttgaatga
      661 tttagtgcga ctggcgaagg cgctggacgt cgattttcct ttttctgctt acgccgccat
      721 tgagcatatt cccgtgattg aagtggagtt tgtccatctg gcggggctgg aaagttatcc
      781 cggtcagttg acgttactgg atacccccgg gccaaatgaa gccgggcaac cgcatctgca
      841 aaaaatgctt aaccagcagc tggcacgcgc ctcggcggta ctggcggtgc tggattatac
      901 gcaactgaaa tcgatctccg atgaagaggt ccgtgaggcg attttggcgg tggggcaatc
      961 ggtgccgctg tatgtgctgg tcaataagtt cgatcaacag gatcgtaaca gtgacgacgc
     1021 cgaccaggtg cgggcactga tttccgggac gctgatgaaa ggctgtatta cgccacagca
     1081 gatatttccg gtgtcgtcga tgtggggcta cctggcgaat cgggcgcgct atgagttagc
     1141 caacaacggt aagttaccag cgccagagca acaacgctgg gtggaagatt ttgcccatgc
     1201 cgcgctcggc aggcgctggc gtcatgccga tctggcggac ctcgaacata ttcgtcatgc
     1261 tgccgatcag ttgtgggaag attcgctgtt cgcccagcca attcaggcgt tgcttcatgc
     1321 cgcttacgct aacgcctcat tgtatgctct gcgatctgct gcgcataaac tgttgaatta
     1381 cgcgcagcag gcgcgggaat acctggattt tcgtgcgcac gggttaaacg tcgcttgtga
     1441 acaattgcgg caaaatatcc atcaggtcga agaaagtttg cagctattgc aactcaatca
     1501 ggcgcaggtg agcggcgaga ttaaacatga aatcgagctg gccctgacct ccgccaacca
     1561 ctttctgcgt caacagcaag atgcgctgaa tgcgcagtta gccgccttgt ttcaggatga
     1621 ttcggagccg ttaagcgaga ttcgtacctg ctgtgagaca ctgttacaga cggcgcagaa
     1681 caccatcagt cgcgacttta cgctgcgttt tgccgagctt gaatccaccc tttgccgggt
     1741 gttaaccgat gttattcggc ccattgagca acaagtcaaa atggaattga gcgagtcagg
     1801 gtttcgtcct gggtttcatt ttcctgtttt tcacggagta gttccccacg tcaacactcg
     1861 ccagctgttc agtgaagtca tttcgcacca ggaggcaacg gacgagcaga gcacgcgttt
     1921 aggcgttgtg cgtgagactt tttcgcgctg gttgaatcag cccgactggg gacggggaaa
     1981 tgagaaatcc ccgacagaaa cggttgatta cagtgtgttg caacgagcat taagcgcaga
     2041 agtcgatctt tattgccaac aaatggctaa agttctggca gagcaggtcg atgaatctgt
     2101 tacggcaggc atgaatactt ttttcgctga gttcgcttca tgtttgacgg aattacagac
     2161 gcgtttacgc gaaagcctgg ctctgcgtca acaaaatgaa tcggtggtca ggctgatgca
     2221 gcagcaattg cagcagactg tgatgactca cggctggatt tacaccgacg cccagctgtt
     2281 acgcgatgat attcaaacac ttttcacggc agaacgatat tgaccaagac gttactggac
     2341 ggccccggtc gcgtgctgga gtcggtttat ccccgctttt tagtggatct ggcgcagggc
     2401 gatgatgccc gccttccaca agcccatcag cagcagtttc gtgaacgact gatgcaggaa
     2461 cttctttcgc gtgtgcagct tcagacatgg acgaacggcg gcatgttaaa tgcgccgctt
     2521 agcctgcgac tgacaatggt ggaaaaactg gcgtcgatgc tggatcccgg tcatctggcg
     2581 ctgacgcaga tcgcgcagca tctggcgctg ctgcaaaaaa tggatcaccg ccagcactct
     2641 gctttcccgg agctccccca gcaaattgcc gccttgtatg agtggttttc agcccgttgt
     2701 cgctggaagg aaaaggcgtt aacgcaacga ggccaggcct actggtgcag gcaggtgatc
     2761 agagcgagca aatttttacc cgctggcgtg ctggggcgta taacgcctgg tcgttgcctg
     2821 ggcgctgttt tatcgttctc gaagagttgc gttggggggc atttggcgat gcctgtcgtc
     2881 tgggaagccc gcaagcggtg gcgttgctgc tgggtgattt gcgcgtgaaa gcgacacaac
     2941 atctggcaga gagtatcaat gcggccccga ccacgcgtca ctattaccat cagtggtttg
     3001 cctcttcgac cgttccgacg ggcggggatc atgctgattt tttaagttgg ctgggaaagt
     3061 ggaccacggc agataaacaa cccgtttgct ggtcagtgac ccaacgttgg caaactgtcg
     3121 cgctggggat gccacgactc tgttcagcgc agcgtttggt gggggcaatg gtcgaggaaa
     3181 tcttctctgt aaatttggcg taaataatca gttacatcaa tgagtcctaa acgaaatcca
     3241 tgtgtgaagt tgatcacaaa tttaaatact ggtagggtaa aaaggtcatt aactgcccaa
     3301 ttcaggcgtc aactggtttg attgtacatt ccttaaccgg agggtgtaag caaacccgct
     3361 acgcttgtta cagagattgc atcctgcaat tcccgctccc cttttgcggc cgtcgcgctg
     3421 atttttctgg cgtttgcgga aatgggccaa ctctgcgagg aaagctatgc tgaaaaggaa
     3481 aaaagtaaaa ccgattaccc ttcgtgatgt caccattatt aatgacagta aactgcgtaa
     3541 agccattacc gcagcatcac tgggtaatgc aatggaatgg ttcgattttg gtgtttatgg
     3601 ttttgttgct tacgcattag gtaaagtttt tttcccgggg gctgacccca gcgtgcagat
     3661 ggttgctgca cttgccactt tctccgttcc ctttctgatt cgaccgcttg gcggactctt
     3721 ctttggtatg ttgggcgata aatatggtcg ccagaagatc ctcgctatca ctattgtgat
     3781 tatgtcgatc agtacgttct gtattggctt aataccgtcc tacgacacga ttggtatttg
     3841 ggcaccgatt ctgctgttga tctgtaagat ggcacaaggt ttctcggtcg gcggtgaata
     3901 taccggggcg tcgatatttg ttgcggaata ctcccctgac cgtaaacgtg gctttatggg
     3961 cagctggctg gacttcggtt ctattgccgg gtttgtgctg ggtgcgggcg tggtggtgtt
     4021 aatttcgacc attgtcggcg aagcgaactt cctcgactgg ggctggcgta ttccgttctt
     4081 tattgctctg ccgttaggga ttatcgggct ttacctgcgc catgcgctgg aagaaactcc
     4141 ggcgttccag cagcatgttg ataaactgga acagggcgac cgcgaaggtt tgcaggatgg
     4201 cccgaaagtc tcgtttaaag agattgccac taaatactgg cgcagcctgt tgacatgtat
     4261 tggtctggta attgccacca acgtgactta ctacatgttg ctgacctata tgccgagtta
     4321 tttgtcgcat aacctgcatt actccgaaga ccacggggtg ctgattatta tcgccattat
     4381 gatcggtatg ctgtttgtcc agccggtgat gggcttgctg agtgaccgtt ttggccgtcg
     4441 tccgtttgtg ctacttggta gtgttgccct gtttgtgttg gcgatcccgg cgtttattct
     4501 gattaacagt aacgtcatcg gcctgatttt tgccgggtta ctgatgctgg cggtgatcct
     4561 taactgcttt acgggcgtta tggcttctac cttgccagcg atgttcccga cgcatatccg
     4621 ttacagcgcg ctggcggcgg catttaatat ttcggtgctg gttgccggtc tgacgccaac
     4681 actggcggcc tggctggtcg aaagctcgca gaatctgatg atgcctgcct attacctgat
     4741 ggtagtggcg gtgattggtt taatcaccgg cgtaaccatg aaagagacgg caaatcgtcc
     4801 gttgaaaggt gcgacaccgg cggcgtcaga tatacaggaa gcgaaggaaa ttctcgtcga
     4861 gcattacgat aatatcgagc agaaaatcga taatattgac cacgagattg ccgatttgca
     4921 ggcgaaacgt acccgcctgg tgcagcaaca tccgcgaatt gatgaataag ctgaaacgga
     4981 tggcctgatg tgacgctgtc ttatcaggcc aattgaactc ttaaggttca cttaatctct
     5041 gacgcgcata ctctcctcca ggttaacgga ggagagtgca atgaaaaacc gtgtttatat
     5101 gaaagtttaa ctaccgtgtt cagcgtgctg gtggtcagca gctttcttta tatctggttt
     5161 gccacgttct gatctttctt cagccgtacc caggcccgcg tgccggaagt ctcttgccgg
     5221 ttttgcagga aaaactgccc gtgatgcaac tgtgtaatgc ggctgacaat acttaacccc
     5281 agaccaatcc cgccataacg gctgtccata cgtacaaacg ctttactcaa ctccccgcat
     5341 ttactctcat caatacctgg tccttcatct tcaactgcca tgaccgctcc gccatcttct
     5401 tgcagcttaa tcataatgtt gctgccttgc gggctgtaac gatgggcgtt ttctaccagg
     5461 tttcgcaata acatccgcag cagggttgca tcaccctgaa cggtgatgtc ggcggcgctc
     5521 tctggcaata gcagggtttg ctgtcgctgg tcgagcatgg tactgagttc gtcatacgag
     5581 gggagaatga catcttccag cagttttaca tgttgataat taccggaaga aaatgactgt
     5641 ccggcacgcg ccagttgcag cagctgggag acgctctcca tcatctgatc aagccgtgcc
     5701 actaacggtg ctacatcaat gtgatgcgtt ttcgccagca gttccagatg caaacgcacc
     5761 cccgccagtg gcgttcgcag ttcgtgcgcg acgtcagcgg taaacaacct ttcgttatcc
     5821 agcgtgctgg tcaggcgact gaccagatcg ttcaacgccg aaaccaccgc ttcgatttcg
     5881 agggtggcgc tgtgaatggc aatgggcgtt aagttgtcgg cagtgcgcgc ttccagctct
     5941 ttttgcagct ccgccagcgg gcgggtgatg cggcgtaccg cctgatagca gataaatagc
     6001 gtcaggctga ccataaagac gccggggaca atcaggctgg cgaccgcctc gcggatctca
     6061 cgcatgatgt ggcgatcgtt gttgcgattg tcgcgtagcg cctgctcaaa cagctgaatc
     6121 tgctcggtac tttcatgcca tagccagaag acgctgatca gctcaaacac caacaaaatg
     6181 gccccgatag tcaatatcag ccgttggcgc agcgatattg gtcggcgcag aaaacgcatc
     6241 agattcaatt agttttcctc attcgcgacc agcatatagc caaagccgcg cacggtgcgg
     6301 atacgggatt tgcccacttt gtcgcgcaga ttgtggatat gcacttccag ggtgttggtc
     6361 gagggttcat tgtcccagtt atagatgtcg ttgtagagaa tttcccgatg taccggactg
     6421 cctgctttga gcattaaccg tgacagcaga gcatattctt tgggcgtcag aatcaactct
     6481 tcaccgccca tccatacctg acggcgaccc atattcagcg tcagattgcc aacaatcagc
     6541 tcactttcgc cctgattatt atggcgtcgt agcagggcgc ggatacgggc gtgtaactct
     6601 tccagcgcaa aaggcttcac cagatagtca tcggcaccga catccagccc ggcgattttg
     6661 tcggtcagcg tatcgcgagc ggtgaggatc agtaccggca gggtatattt tttctgccgg
     6721 atacgggcga gaaaatgcag tccatcttcg tcgggtaacc ctaaatccag taccaccagg
     6781 ctgtaatgac cggcttcaag gctttgttcc gccatccgcg cggttgtcac gccatcgcac
     6841 gcgtagcctt cggtttgcgc cgccagaatc agtccctgca ataacagcgt atcgtcttca
     6901 acaatcagaa ttttcattta ctcactctcc tgcaagtttg cagaatatca tccgcagcct
     6961 ggtaatactt cgtctcaacg ccagttaatc ccaatagcgt ggagaataaa ttgtcttgtg
     7021 aatagtgttg cgtttgcgcc tgtttttgca ggcagttctg gtcaacctga taccgttttt
     7081 gataatcctc cgacagccac agcagcatcg gcacctgttt ttggctatcc ggggcgatgg
     7141 cataaggcag accgtgcaga tagatgccat tttcacctaa cgattcaccg tggtcagaaa
     7201 gataaaccag gctggtggta aatttatcct gatgttcttt cagcagatta atcgctttat
     7261 caacaatata gtcgacgtaa accagcgtgt tgtcgtaagt gttcaccagt tgctctttgg
     7321 tacaggtctg gatctcattg gtgtcgcagg ttggggtaaa tttcctgaac tgcggcggat
     7381 agcggttgta ataggtcgga ccgtggctgc cgatggtgtg taagacaatc acgccatcac
     7441 cctgcaggtt attgatgtac tcttccagcc cgtggaacag cacttcgtca tagcattcgc
     7501 cgttgatgca ctgaccaggc agattcagcg cggtgacgtt ctggtgaggc acgcggtcgc
     7561 aggcaccttt acagccgcca tcgttgtcat tccacagcac gttgatgccc gctcgctgaa
     7621 tgatatccag cacgccttcc tggtgctgtg ccagctcttc tttgtaatgc tcacgcggca
     7681 tatccgagaa catgcacggt actgaaactg ccgttgccgt gccgcaagat acggtattag
     7741 ggaaatagac cacgttatct ttcgccagcc gcgggttagt ttcacgcggg tagccgttga
     7801 gggagaagtt ctccgcccgc gaggtttcgc cgacaatcag gatggtcaaa tttttacgtt
     7861 tttcgttctg cattaacggg ttgcggtggg cgtcttcacc aattcgcacc agcggtagat
     7921 ttgccagtcg ctgatgggag taccatgacc agctggcaac aatgctgtta gaggggctta
     7981 aggatttcac cagctctttg ttattgcgga acaacgaggc gtagtcttta taaaacagtg
     8041 cggcgaccag caaaatcagt agtacagaaa ccagaatatt ggctccacgg aaaagaacac
     8101 tgcgcagacg cgaggtggca ggtttgattt ttatccagca ggcaatcagc gcagcaagca
     8161 cgccgctgaa tcccagcgtt aataacattt gcggtgtcat cagcgcataa ctttctgccg
     8221 gagtggtatc aataatattg gcaatcatcg agcggtcgat gacgatgccg taagtcatta
     8281 tgaaatattg tgcagccgcg ccaaccagaa taaacaggca ggccagtggt cgattaagcc
     8341 ataagaaaga gcttagtgtc aggacaatat taatcacgct gaaagcgacg accggcatcg
     8401 acaagaaaac cagtacgtta tgcagcgaat ccagcggcag cgcctgcaac acctgtttaa
     8461 aaaaggcaat attcaggcag atagagatat aaaaagcggc caacaatagc caggcgagta
     8521 aattcaaaga gggtcttttt agtaggcgct tcaacatcac ggtgtttcca tcgaacaaag
     8581 tgcgcatatg ctcgcaaagc aaaattaagc caaccttaag ttcttaaggt tggcttttat
     8641 gtttgctgga ttaaggggaa ttaatctttg cttattggtg catctaaggg atacgggttt
     8701 ttatgtagcc ggttgtaatt cagcgcatac atggcggtga tgaccatcag ggtgacaaat
     8761 gaccacataa cctctttcgc tccggacccc accacggccc agatgcagta gaggaaggca
     8821 atggtagtaa ctgccagata tgccgggcgt gctttaccaa agtgaccgtg tccgagcagc
     8881 agtaacgccg cacaggtgta aagatatggc accagtgtaa agatgaccga gacggaagaa
     8941 accagaccga actctttggt cgcgtttggt gaaatgctgc tgagctggaa gatggtcatc
     9001 aaaataccga cgataatcag ccccgccact ggcgtacccg ctttatttac acgggcaaaa
     9061 atcggtggga acagtccgtc atcggcagcg gctttcgccg tttgacccgc cagcaacgtc
     9121 cagccgccca gtgaacctaa gcaacccgca gctgcgcaga aggaaacaat ggccccgggg
     9181 gtgtcaccca acgccatccg tgcggcatca ccgaatggcg aagcagaaac gcgcagtgcg
     9241 gcattaggga tcatccccat aatcgcggtg gtagaaagta catagcaaac ggcggcaatc
     9301 aataccccac caatggtggc gatagggaca ttgcgtttcg ggtttttcac cacacctgcg
     9361 gcaacggagg cactttccac accgatgaac gaccacagcg taacgttaag ggtactttga
     9421 attgcaccga aggtacccag gccgctgacg ttccatgccg ccatataggt ttcaccacgg
     9481 aaccagaacc agccaaatac ggcaatcccg acgatgggga tcagcgccag cacggtggca
     9541 actgcctgca cacgggtgat cattttcgga ccaacaatgt tcagcaggac gaagatccac
     9601 agcaccacga cgcaggtgat ggttaatacc aatggatctt tcagaatcgg gaagaagtaa
     9661 cttaaatatc ctacgccaat gaccaccatg gcgatattgc cgatccagca ggccagccag
     9721 tagaggacgt tggtttgata accgagaaac gggccaaagc agcggcgggc gtaagcgtaa
     9781 gaaccaccag gacttgggtc gaggaacgac attttggcgt ataccatcga gagccccagt
     9841 gcaccgataa tcgtcaccaa ccatccataa atggcaatcc cgccagtgga ggccaggttt
     9901 gcaggtaaca gaaaaacacc tgaccccata atattccccg acaccatcag ggtgacgggg
     9961 attaagccca ctttgtgagc atcagcatcc gaagacataa ttaaactcct gcgaaggcga
    10021 gcttcgtgac aataaattac gtcatatcat acgcctgcat tcgatagttg aattattatc
    10081 gaccgggtta tcgctgatgc cgttattaat atagctcttc gttaaggtta aaaatcaggc
    10141 gacagtgcgt tctctgtgct gactaacata atgcagcggc gtcataccgt agaagtcttt
    10201 aaagacagaa ataaagtacg acgtactgtt gtagccgcag gactgtgata cctgagagat
    10261 atttttaccg tccatcatta attcatttac ggcataacgc atgcggcagg tggtgattat
    10321 ttggctataa ctggtgtttt cgcttttcag ctttttcttt aacagacttg ggctaagaca
    10381 taaacaactg gctaccatac taagattcca gtctttgtga atatcgcttt caataatttg
    10441 ataaacgctg tcacttacac aattacgtaa catatacatc attaatgaaa ggaatttttt
    10501 actgtcgaga aaacgggata gcaccgtgaa taataatgcg cgtgttcgtt ccttttctga
    10561 ctcagtttct gcgggcatca tgctgtgttg cgcggcaacg cgaaagacgt ctggcgtcag
    10621 gcatggcagg gtgagtatgg gcgtagcgct acgttgccat actggtattt gcgagagatc
    10681 tttattcaga aaccggaggt aatctttgat gatgtcgtga ctaatatgag caaccaaagt
    10741 gttgttaaga gaggagacgt cgataatatt attttcacaa tttaataacg ccatatggtt
    10801 agctttaagg ctaataggtt ctttcccatt cacccttatc cagacatctt tttcagtcaa
    10861 taaaacaata caaggttggt cgctgcaaat cctcatacat gtactcctga gtgcgaataa
    10921 aagaccagtt ctcgctaaag caaagcgata ccgggaaatg gttatataat tgtatgacga
    10981 atataaacat gcataaaaat aacgagtttt actaatatta caaattttta tagtaatttc
    11041 tcatgtacat atttttttac agggtaaata acaggcaaaa aaaagcgcgg ggtggggccg
    11101 cgcaaaaagt atgacatttt tgtttgcagc aatttttatg aaaacgttgc catactcaaa
    11161 aggcctaagg ccaggcggcg taatgttatt taaacaatta cgccttcagc ggaatagtgg
    11221 ttacgctttc acacacatag cgtggtaaat accgtcaata atttcagtcc cttcagtttc
    11281 gtgttcaaat ccagggaaat ggtggtccca ggattgcagc gagcgtaaat aacttacttg
    11341 cggactgttt ttatcgccga agttttcacc agacagcagc atcgggattc ctggcggata
    11401 tgggataact gagtttgccg cgatgcgtcc tggcagattt tcaatggata ccagttcgac
    11461 attgttgtcg acaatcgcgt tgtacgcttc acgcggggtg atttccgcca ccggcaggcc
    11521 ggaataggct tcgttcaacc gtgcgccagg gttgttttct ttcagccagg caaacatggt
    11581 gtcacccaga tcgtgaatcc ccatgttcgc gtaagtgtca ggatattgtt caacaagttc
    11641 cggcatcacc tgcgccagcg gtgtgttggc gtcatagtgg cgtttgaagg agcaaagggt
    11701 gttaaccaga gtcccccatt tcccacgggt tacgcccata gagaacagga acataatttg
    11761 gaagtcagtg gtgcgggtag gcacaatgcc gtggcgacca agccaggcag tgaccagcgc
    11821 cgccggaaca ccggtttctt ccagttcacc atcttcaccc attcccggag caaggatgct
    11881 gactttaatc gggtcgagca tactccagtt atccggaata tctttgaagc cgtgccagct
    11941 ttcgcccgga tgcattaccc agtagtcctg aacggtggtc agcagtttgg ttggtgcgtc
    12001 agcaaagtca taggttttgc cggtttgtgg gtcggtgacg acttctttgt tccacggttt
    12061 gaagaaccag ctaccgtcag cggtgaactc tttatacagc cgcgccatcg cctgacggaa
    12121 atcaaccgct tcgtcgatca cttcctgcgt cagtgacagg ccgctgttgc cgtccatcat
    12181 cgacaccgcc acgtcgttgg atgcgcagat ggcatacagc ggggaggtgg tggcatgcat
    12241 catgtaggcc tggttgaagc gggagaagtt aatcgcccca cgaccttcac gtacatgaat
    12301 ataagaagcc tgtgaaagcg cattcagcag tttgtgggtg gagtgggtgg cgaaaacggt
    12361 aggaccgttg tgatcgccag gttcgccgcg catggcatag tgatcggcat agatcgggtt
    12421 gaaacgtgca tagccgtacc aggcttcgtc aaagtgcaga cgatcggagg ttttttccag
    12481 cagatcctgc gcttctttag cgttataaca cacgccgtca taggtgcagt tggtcaccac
    12541 gcagtaagac ggtttttgcc cggctttgtc tttagtcagc gggctttcac tgattttctt
    12601 ctgcaaggtt tcaggttgca tttcctgcgg atagattggc ccgataatgc cgtagcggtt
    12661 gcggcttggc accatgtaga ccggtttcgc gcctgtcagc atcaagcctt gttcgatgga
    12721 tttatggcag ttacggtcaa cgaccacgac atcgttatcg gtcatgcaag cctgcatgat
    12781 ggtgcggtta gagccggaag taccgacgac taccgaccag gagcgatcgg caccaaatac
    12841 gcgtgcggca tatttttcgc tttcgccaaa tgcgccagta tggtcaagca aagaaccgag
    12901 ggaagttcgt tcgatgccca tatctgtgcg gaacagattt tctccatagt agtcatggta
    12961 gaaacgtccg gcgggtgttt tggtaaaacc aacgccgccc tggtggcctg gcgctgccca
    13021 ggaatattca tggatgtcgc tatacttcat cagcgcgctg aacagtggcg gcaacagctg
    13081 ctggcggtag cgggtcatcg cggcaacggc gcgtccggcg ataaagtcgg tggtatcttc
    13141 cagaatccag gcgaattcat cgacaagctc cagcaggtcg cgatccattg cggcgagggc
    13201 tttttcccga tcgcccaaca ggaagaccgg cacgttttgt tggcgctcat gaagcttacc
    13261 gatcaattgt ctgacgtttt gatgttcgtc cggatgttcc atttgatagc tgaacatcag
    13321 gcagtcaatg gcttcgtttg aagagagaat ggcaaaacca tcatcaaagg aggtggattt
    13381 aatcacggta acattttgct ggcttaaagc atctgccaga cgctcaacgg cgttaccgac
    13441 ccaggtgtct tgatggagaa actcgctttc aacaattaat actttcatca ttgcttaccc
    13501 ggttatgaag gaatcttcgt tgcgggcaag tatcttccgg ccttttcggg ctgtaaagcg
    13561 cgtgaaaaac aaacattttt gaaatattta tttttataaa caatgcgtta tgtgattatt
    13621 ttaaattatt ttcactgctt gttatcgacg gctaaactat ttttttggct gatactgata
    13681 tcgtctttag ccgggaaacg tctggcggcg ctgttggcta agtttgcggt attgttgcgg
    13741 cgacatgccg acatatttgc cgaacgtgct gtaaaaacga ctacttgaac gaaagcctgc
    13801 cgtcagggca atatcgagaa tacttttatc ggtatcgctc agtaacgcgc gaacgtggtt
    13861 gatgcgcatc gcggtaatgt actgtttcat cgtcaattgc atgacccgct ggaatatccc
    13921 cattgcatag ttggcgttaa gtttgacgtg ctcagccaca tcgttgatgg tcagcgcctg
    13981 atcatagttt tcggcaataa agcccagcat ctggctaaca taaaattgcg catggcgcga
    14041 gacgctgttt ttgtgtgtgc gcgaggtttt attgaccaga atcggttccc agccagagag
    14101 gctaaatcgc ttgagcatca ggccaatttc atcaatggcg agctggcgaa tttgctcgtt
    14161 cggactgttt aattcctgct gccagcggcg cacttcaaac gggctaagtt gctgtgtggc
    14221 cagtgatttg atcatcatgc cgtgagtgac gtggttaatc aggtctttat ccagcggcca
    14281 ggagagaaac agatgcatcg gcagattaaa aatcgccatg ctctgacagg ttccggtatc
    14341 tgttagttgg tgcggtgtac aggcccagaa cagcgtgata tgaccctgat tgatattcac
    14401 tttttcattg ttaatcaggt attccacatc gccatcgaaa ggcacattca cttcgacctg
    14461 accatgccag tggctggtgg gcatgatatg cggtgcgcga aactcaatct ccatccgctg
    14521 gtattccgaa tacagcgaca gcgggctgcg ggtctgtttt tcgtcgctgc tgcacataaa
    14581 cgtatctgta ttcatggatg gctctctttc ctggaatatc agaattatgg caggagtgag
    14641 ggaggatgac tgcgagtggg agcacggttt tcaccctctt cccagagagg cgaggggagc
    14701 gtccgagcat catgaggccg aaaactctgc ttttcaggta acttattacc ataaactcag
    14761 atttactgct gcttcacgca ggatctgagt ttatgggaat gctcaacctg gaagccggag
    14821 gttttctgca gattcgcctg ccatgatgaa gttattcaag caagccagga gatctgcatg
    14881 atgactgcac ccaaaattac atttatcggc gctggttcga cgattttcgt taaaaatatt
    14941 cttggtgatg tgttccatcg agaggcgctg aaaacggcgc atattgccct gatggacatt
    15001 gatcccaccc gcctggaaga gtcgcatatt gtggtgcgta agctgatgga ttcagcaggg
    15061 gccagcggca aaatcacctg ccacacccaa cagaaagaag ccttacagga tgccgatttt
    15121 gtcgtggtgg catttcagat tggcggttat gaaccttgca cggtgactga tttcgaggtc
    15181 tgtaagcggc atggtctgga acaaaccatt gccgatacgt tggggccggg cggtattatg
    15241 cgcgcgctac gtaccattcc gcatctgtgg caaatttgcg aggacatgac ggaagtctgc
    15301 cccgatgcca cattgctcaa ctacgttaac ccaatggcga tgaatacctg ggcgatgtat
    15361 gcccgctatc cgcatatcaa acaggtaggg ctgtgccatt cggtgcaggg aacggcggaa
    15421 gagctggcgc gtgacctcaa tatcgatccg tccacgctgc gttaccgttg cgctggtatc
    15481 aaccatatgg cgttttacct ggaactggag cgtaaaaccg ccgacggcag ttacgtgaat
    15541 ctctacccgg aactgctggc ggcttatgaa gcagggcagg caccgaagcc acatattcat
    15601 ggtaatactc gctgccagaa tattgtgcgc tacgaaatgt tcaaaaagct gggctacttc
    15661 gtcacggaat cgtcagaaca ttttgccgaa tatacgccgt ggtttattaa gccaggtcgt
    15721 gaggatttga ttgagcgtta taaagtaccg ctggatgagt acccgaaacg ctgcgtcgag
    15781 cagctggcga actggcataa agagctggag gagtataaaa acgcctcccg gattgatatt
    15841 aaaccgtcac gggaatatgc cagcacaatc atgaacgcta tctggactgg cgagtcgagt
    15901 gtgatttacg gcaacgtccg taacgatggt ttgattgata acctgccaca aggatgttgc
    15961 gtggaagtag cctgtctggt tgatgctaat ggcattcagc cgaccaaagt cggtacgcta
    16021 ccttcgcatc tggccgccct gatgcaaacc aacatcaacg tacagacgct gctgaccgaa
    16081 gctattctta cggaaaatcg cgaccgtgtt taccacgccg cgatgatgga cccgcatact
    16141 gccgccgtgc tgggcattga cgaaatatat gctcttgttg acgacctgat tgccgcccac
    16201 ggcgactggc tgccaggctg gttgcaccgt taaaacgcga ctaaacgcta ctgcgccggg
    16261 ggatttattc cggcgcacac ctctgacgat accaataaca gaaggcgggc gttggtaaca
    16321 gcgacccgat accctatgag catttcaatg actacaaaac tcagttatgg atttggagcg
    16381 ttcgggaagg attttgcgat cggcattgtg tatatgtacc tcatgtatta ctacaccgat
    16441 gtcgttgggc tgtctgtggg tttggtcggt actttgtttc tggtggcgag gatctgggat
    16501 gctattaacg atccgattat g
//
LOCUS       DAJVSY010000090        16472 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.090, whole genome shotgun sequence.
ACCESSION   DAJVSY010000090 DAJVSY010000000
VERSION     DAJVSY010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16472
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.090"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(118..1401)
                     /gene="gltA"
                     /locus_tag="OQQ19_002591"
     CDS             complement(118..1401)
                     /gene="gltA"
                     /locus_tag="OQQ19_002591"
                     /EC_number="2.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (Si)-synthase"
                     /protein_id="HCS1804164.1"
                     /translation="MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFD
                     PGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYD
                     EFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREI
                     AAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILER
                     AMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKML
                     EEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKD
                     DLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGW
                     IAHWSEMHSDGMKIARPRQLYTGYEKRDFKSDIKR"
     gene            complement(1607..1714)
                     /locus_tag="OQQ19_002592"
     CDS             complement(1607..1714)
                     /locus_tag="OQQ19_002592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804165.1"
                     /translation="MRKSYEVGISPKINLCNSVEVLTNSFGTVISGRQV"
     gene            2095..2499
                     /gene="sdhC"
                     /locus_tag="OQQ19_002593"
                     /gene_synonym="cybA"
                     /gene_synonym="dhsC"
     CDS             2095..2499
                     /gene="sdhC"
                     /locus_tag="OQQ19_002593"
                     /gene_synonym="cybA"
                     /gene_synonym="dhsC"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000263334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase cytochrome b556 subunit"
                     /protein_id="HCS1804166.1"
                     /translation="MWALFMIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFV
                     AVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFG
                     YLEETFEAGKRSAKISFVITVVLSLLAGVLVW"
     gene            2493..2840
                     /gene="sdhD"
                     /locus_tag="OQQ19_002594"
                     /gene_synonym="cybS"
                     /gene_synonym="dhsD"
     CDS             2493..2840
                     /gene="sdhD"
                     /locus_tag="OQQ19_002594"
                     /gene_synonym="cybS"
                     /gene_synonym="dhsD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase membrane anchor subunit"
                     /protein_id="HCS1804167.1"
                     /translation="MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELT
                     YEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALV
                     VYVIYGFVVVWGV"
     gene            2840..4606
                     /gene="sdhA"
                     /locus_tag="OQQ19_002595"
     CDS             2840..4606
                     /gene="sdhA"
                     /locus_tag="OQQ19_002595"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HCS1804168.1"
                     /translation="MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS
                     HTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHM
                     GLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTI
                     FSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHIN
                     TGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERY
                     APNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELS
                     RTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACV
                     SVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNN
                     RNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNT
                     QRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESM
                     TRRSVNMEPKLRPAFPPKIRTY"
     gene            4622..5338
                     /gene="sdhB"
                     /locus_tag="OQQ19_002596"
     CDS             4622..5338
                     /gene="sdhB"
                     /locus_tag="OQQ19_002596"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit
                     SdhB"
                     /protein_id="HCS1804169.1"
                     /translation="MRLEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLKE
                     KDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRD
                     LVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCP
                     SFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPK
                     GLNPTRAIGHIKSMLLQRNA"
     gene            5639..8440
                     /gene="sucA"
                     /locus_tag="OQQ19_002597"
     CDS             5639..8440
                     /gene="sucA"
                     /locus_tag="OQQ19_002597"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HCS1804170.1"
                     /translation="MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRST
                     FQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFR
                     GHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEAL
                     KQTYCGPIGAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLG
                     AKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQ
                     DLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSV
                     RARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQV
                     GFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFI
                     DLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNL
                     YRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPE
                     AVEMQSRVAKIYSDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFF
                     HRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIW
                     EAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQL
                     CAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT
                     FLPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAM
                     QEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGY
                     MSVHQKQQQDLVNDALNVE"
     gene            8455..9672
                     /gene="odhB"
                     /locus_tag="OQQ19_002598"
     CDS             8455..9672
                     /gene="odhB"
                     /locus_tag="OQQ19_002598"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HCS1804171.1"
                     /translation="MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDK
                     VVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQ
                     QASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKSPAKESAP
                     AAAAPAAQPALAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRK
                     QYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTP
                     RGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMS
                     TPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLITIK
                     ELLEDPTRLLLDV"
     gene            9948..11114
                     /gene="sucC"
                     /locus_tag="OQQ19_002599"
     CDS             9948..11114
                     /gene="sucC"
                     /locus_tag="OQQ19_002599"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HCS1804172.1"
                     /translation="MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWV
                     VKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAAT
                     DIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPQLIHKVALDPLTGPMPYQG
                     RELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGA
                     DGNALFRQLDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIV
                     KLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKVVLVNIFGGIVRCDLIADGIIG
                     AVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK"
     gene            11114..11983
                     /gene="sucD"
                     /locus_tag="OQQ19_002600"
     CDS             11114..11983
                     /gene="sucD"
                     /locus_tag="OQQ19_002600"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HCS1804173.1"
                     /translation="MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKG
                     GTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPT
                     LDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYE
                     AVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEA
                     AAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRS
                     LADIGEALKTVLK"
     gene            complement(12087..12809)
                     /gene="mngR"
                     /locus_tag="OQQ19_002601"
     CDS             complement(12087..12809)
                     /gene="mngR"
                     /locus_tag="OQQ19_002601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-D-glycerate transport/metabolism system
                     transcriptional repressor MngR"
                     /protein_id="HCS1804174.1"
                     /translation="MGHKPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRV
                     TVRQALRQLVEQQILESIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVDTHSEVLIF
                     EVIPADDFLQQQLQITAQDRVWHVKRVRYRKQKPMALEETWMPLALFPDLTWQVMENS
                     KYHFIEEVKKMVIDRSEQEIIPLMPTEEMSRLLNISQTKPILEKVSRGYLVDGRVFEY
                     SRNAFNTDDYKFTLIAQRKSSR"
     gene            12978..14894
                     /gene="mngA"
                     /locus_tag="OQQ19_002602"
     CDS             12978..14894
                     /gene="mngA"
                     /locus_tag="OQQ19_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001393949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS 2-O-a-mannosyl-D-glycerate transporter
                     subunit IIABC"
                     /protein_id="HCS1804175.1"
                     /translation="MNLTTLTHRDALRLNARFTSREEAIHALTQRLAALGKISSTEQF
                     LEEVYRRESLGPTALGEGLAVPHGKTAAVKEAAFAVATLSEPLQWEGVDGPEAVDLVV
                     LLAIPPNEAGTMHMQLLTALTTRLADDEIRARIQSATTPDELLSALDDKGGTQPSASF
                     SNAPTIVCVPACPAGIAHTYMAAEYLEKAGRKLGVNVYVEKQGANGIEGRLTADQLNS
                     ATACIFAAEVAIKESERFNGIPALSVPVAEPIRHAEALIQQALTLKRSDETRTVQQDT
                     QPVKSVKTELKQALLSGISFAVPLIVAGGTVLAVAVLLSQIFGLQDLFNEENSWLWMY
                     RKLGGGLLGILMVPVLAAYTAYSLADKPALAPGFAAGLAANMIGSGFLGAVVGGLIAG
                     YLMRWVKNHLRLSSKFNGFLTFYLYPVLGTLGAGSLMLFVVGEPVAWINNSLTAWLNG
                     LSGSNALLLGAIFGFMCSFDLGGPVNKAAYAFCLGAMVNGVYGPYAIFASVKMVSAFT
                     VTASTMLAPRLFKEFEIETGKSTWLLGLAGITEGAIPMAIEDPLRVIGSFVLGSMVTG
                     AIVGAMNIGLSTPGAGIFSLFLLHDNGAGGVMAAIGWFGAALVGAAISTAILLIWRRH
                     AVKHGNYLTDGVMP"
     gene            14912..>16472
                     /locus_tag="OQQ19_002603"
     CDS             14912..>16472
                     /locus_tag="OQQ19_002603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HCS1804176.1"
                     /translation="MKAVSRVHITPHMHWDREWYFTTEESRILLVNNMEEILCRLEQD
                     NEYKYYVLDGQTAILEDYFAVKPENKDRVKKQVEAGKLIIGPWYTQTDTTIVSAESIV
                     RNLMYGMRDCLAFGEPMKIGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGTDK
                     TEFLWQSSDGSEVTAQVLPLGYAIGKYLPTDENGLRKRLDSYFDVLEKASVTKEILLP
                     NGHDQMPLQQNIFEVMDKLREIYPQRKFVMSRFEEVFEKIEAQRESLATLKGEFIDGK
                     YMRVHRTIGSTRMDIKIAHARIENKIVNLLEPLATLAWTLGFEYHHGLLEKMWKEILK
                     NHAHDSIGCCCSDKVHREIVARFELAEDMADNLLRFYMRKIADNMPQSDADKLVLFNL
                     MPWPREEVINTTVRLRASQFNLRDDRGQPVPYFIRHAREIDPGLIDRQIVHYGNYDPF
                     MEFDIQINQIVPSMGYRTLYIEANQPGNVIAAKSDAEGILENAFWQIALNEDGSLQLV
                     DKDSGVRYDRVL"
BASE COUNT         3954 a         4135 c         4486 g         3897 t
ORIGIN      
        1 aatatatgaa tgtccgatag tggattttat ttttacaatt ttttgtgttt aggcatataa
       61 aaattaaccc gccatttgaa cggcgggtta aaatatttac aacttagcaa tcaaccatta
      121 acgcttgata tcgcttttaa agtcgcgttt ttcatatcct gtatacagct gacgcggacg
      181 ggcaatcttc ataccgtcac tgtgcatttc gctccagtgg gcgatccagc caacggtacg
      241 tgccattgcg aaaatgacgg tgaacatgga agacggaata cccatcgctt tcaggatgat
      301 accagagtag aaatcgacgt tcgggtacag tttcttctcg ataaagtacg ggtcgttcag
      361 cgcgatgttt tccagctcca tagccacttc cagcaggtca tctttggtgc ccagctcttt
      421 cagaacttca tggcaggttt cacgcattac ggtggcgcgc gggtcgtaat ttttgtacac
      481 gcggtgaccg aagcccatca ggcggaaaga atcattttta tctttcgcac gacgaacaaa
      541 ttccggaatg tgtttaacgg agctaatttc ttccagcatt ttcagcgccg cttcgttagc
      601 accaccgtgc gcaggtcccc acagtgaagc aatacctgct gcgatacagg caaacgggtt
      661 cgcacccgaa gagccagcgg tacgcacggt ggaggtagag gcgttctgtt catggtcagc
      721 gtgcaggatc agaatacggt ccatagcacg ttccagaatc ggattaactt catacggttc
      781 gcacggcgtg gagaacatca tattcaggaa gttaccggca taggagagat cgttgcgcgg
      841 ataaacaaat ggctgaccaa tggaatactt gtaacacatc gcggccatgg tcggcatttt
      901 cgacagcagg cggaacgcgg caatttcacg atgacgagga ttgttaacat ccagcgagtc
      961 gtgatagaac gccgccagcg cgccggtaat accacacatg actgccattg gatgtgagtc
     1021 gcgacggaaa gcgtggaaca gacgggtaat ctgctcgtgg atcatggtat gacgggtcac
     1081 cgtagtttta aattcgtcat actgttcctg agtcggtttt tcaccattca gcaggatgta
     1141 acaaacttcc aggtagttag aatcggtcgc cagctgatcg atcgggaaac cgcggtgcag
     1201 caaaatacct tcatcaccat caataaaagt aattttagat tcgcaggatg cggttgaagt
     1261 gaagcctggg tcaaaggtga acacaccttt tgaaccgaga gtacggatat caataacatc
     1321 ttgacccagc gtgcctttca gcacatccag ttcaacagct gtgtccccgt tgagggtgag
     1381 ttttgctttt gtatcagcca tttaaggtct ccttagcgcc ttattgcgta agactgccgg
     1441 aacttaaatt tgccttcgca catcaacctg gctttacccg tttgttattt ggctcgccgc
     1501 tctgtgaaag aggggaaaac ctgggtacag agctctgggc gcttgcaggt aaaggatcca
     1561 ttgatgacga ataaatggcg aatcaagtac ttagcaatcc gaattattaa acttgtctac
     1621 cactaataac tgtcccgaat gaattggtca atacttccac actgttacat aagttaatct
     1681 taggtgaaat accgacttca taacttttac gcattatatg cttttcctgg taatgtttgt
     1741 aacaactttg ttgagtgatt gtcaaattag atgattaaaa attaaataaa tgttgttgtc
     1801 gtgacctgga tcactgttca ggataaaacc cgacaaacta tatgtaggtt aattgtaatg
     1861 attttgtgaa cagcctatac tgccgccagg tctccggaac accctgcaat cccgagccac
     1921 ccagcgttgt aacgtgtcgt tttcgcatct ggaagcagtg ttttgcatga cgcgcagtta
     1981 tagaaaggac gctgtctgac ccgcaagcag accggaggaa ggaaatcccg acgtctccag
     2041 gtaacagaaa gttaacctct gtgcccgtag tccccaggga ataataagaa cagcatgtgg
     2101 gcgttattca tgataagaaa tgtgaaaaaa caaagacctg ttaatctgga cctacagacc
     2161 atccggttcc ccatcacggc gatagcgtcc attctccatc gcgtttccgg tgtgatcacc
     2221 tttgttgcag tgggcatcct gctgtggctt ctgggtacca gcctctcttc ccctgaaggt
     2281 ttcgagcaag cttccgcgat tatgggcagc ttcttcgtca aatttatcat gtggggcatc
     2341 cttaccgctc tggcgtatca cgtcgtcgta ggtattcgcc acatgatgat ggattttggc
     2401 tatctggaag aaacattcga agcgggtaaa cgctccgcca aaatctcctt tgttattact
     2461 gtcgtgcttt cacttctcgc aggagtcctc gtatggtaag caacgcctcc gcattaggac
     2521 gcaatggcgt acatgatttc atcctcgttc gcgctaccgc tatcgtcctg acgctctaca
     2581 tcatttatat ggtcggtttt ttcgccacca gtggcgaact gacatatgaa gtctggatcg
     2641 gtttcttcgc ctctgcgttc accaaagtgt tcaccctgct ggcgctgttt tctatcttga
     2701 ttcatgcctg gatcggcatg tggcaggtgt tgaccgacta cgttaaaccg ctggcattgc
     2761 gcctgatgct gcaactggtg attgtcgttg cactggtggt ttacgtgatt tatggattcg
     2821 ttgtggtgtg gggtgtgtga tgaaattgcc agtcagagaa tttgatgcag ttgtgattgg
     2881 tgccggtggc gcaggtatgc gcgcggcgct gcaaatttcc cagagcggcc agacctgtgc
     2941 gctgctctct aaagtcttcc cgacccgttc ccataccgtt tctgcgcaag gcggcattac
     3001 cgttgcgctg ggtaataccc atgaagataa ctgggaatgg catatgtacg acaccgtaaa
     3061 agggtcggac tatatcggtg accaggacgc gattgaatat atgtgtaaaa ccgggccgga
     3121 agcgattctg gaactcgaac acatgggcct gccgttctcg cgtcttgatg atggtcgtat
     3181 ctatcaacgt ccgtttggcg gtcagtcgaa aaacttcggc ggcgagcagg cggcacgcac
     3241 tgcggcggcg gctgaccgta ccggtcacgc actgttgcac acgctttatc agcagaacct
     3301 gaaaaaccac accaccattt tctccgagtg gtatgcgctg gatctggtga agaaccagga
     3361 tggcgcggtg gtgggttgta ctgcactgtg catcgaaact ggtgaagtgg tttatttcaa
     3421 agcccgcgct accgtgctgg cgactggcgg ggcagggcgt atttatcagt ccaccactaa
     3481 cgcccacatt aacactggcg acggcgtcgg catggctatc cgcgcaggcg taccggtgca
     3541 ggatatggaa atgtggcagt tccacccgac cggtattgcc ggtgcgggcg tactggtcac
     3601 cgaaggttgc cgtggtgaag gcggttatct gctgaacaaa catggcgaac gctttatgga
     3661 gcgttatgcg ccgaacgcca aagacctggc gggccgtgat gtggtggcgc gttccatcat
     3721 gatcgaaatc cgtgaaggtc gcggctgtga tggtccgtgg gggccacacg cgaaactgaa
     3781 actcgaccac ctgggtaaag aagttctcga atcccgtctg ccgggcatcc tggaactctc
     3841 ccgtaccttc gctcacgtcg atccggtgaa agagccgatc ccggttatcc caacctgtca
     3901 ttacatgatg ggcggtattc cgaccaaagt gaccggtcag gcgctgactg tgaatgagaa
     3961 aggcgaagat gtggttgttc cgggactgtt tgccgttggt gaaatcgctt gtgtatcggt
     4021 acacggcgct aaccgtctgg gcggcaactc gctgctggac ctggtggtct ttggtcgtgc
     4081 ggcaggtctg catctgcaag agtctatcgc cgagcagggc gcattgcgcg atgccagcga
     4141 gtctgatgtt gaagcatctc tggatcgtct gaaccgctgg aacaataatc gtaacggtga
     4201 agatccggtg gcgattcgta aagcgctgca agaatgtatg cagcataact tctcggtctt
     4261 ccgtgaaggt gatgcgatgg cgaaagggct tgagcagttg aaagttatcc gcgagcgtct
     4321 gaaaaatgcc cgtctggatg acacttccag cgagttcaac acccagcgcg ttgagtgcct
     4381 ggaactggat aacctgatgg aaacggcgta tgcaacggct gtttctgcca acttccgtac
     4441 cgaaagccgt ggcgcgcata gccgcttcga cttcccggat cgtgatgatg aaaactggct
     4501 gtgccactcc ctgtatctgc cagagtcgga atccatgacg cgccgaagcg tcaacatgga
     4561 accgaaactg cgcccggcat tcccgccgaa gattcgtact tactaatgcg gagacaggaa
     4621 aatgagactc gagttttcaa tttatcgcta taacccggat gttgatgatg ctccgcgtat
     4681 gcaggattac accctggaag cggaagaagg tcgcgacatg atgctgctgg atgcgcttat
     4741 ccagctgaaa gagaaagatc ccagcctgtc gttccgccgc tcctgtcgtg aaggtgtgtg
     4801 cggttccgac ggtctgaaca tgaacggcaa gaatggtctg gcctgtatta ccccgatttc
     4861 ggcactcaac cagccgggca agaagattgt gattcgcccg ctgccaggtt taccggtgat
     4921 ccgcgatttg gtggtagaca tgggacaatt ctatgcgcaa tatgagaaaa ttaagcctta
     4981 cctgttgaat aatggacaaa atccgccagc tcgcgagcat ttacagatgc cagagcagcg
     5041 cgaaaaactc gacgggctgt atgaatgtat tctctgcgca tgttgttcaa cctcttgtcc
     5101 gtctttctgg tggaatcccg ataagtttat cggcccggca ggcttgttag cggcatatcg
     5161 tttcctgatc gatagccgtg ataccgagac tgacagccgc ctcgacggtt tgagcgatgc
     5221 attcagcgta ttccgctgtc acagcatcat gaactgcgtc agtgtatgtc cgaaggggct
     5281 gaacccgacg cgcgccatcg gccatatcaa gtcgatgttg ttgcaacgta atgcgtaaac
     5341 cgtaggcctg ataagacgcg caagcgtcgc atcaggcaac cagtgccgga tgcggcgtga
     5401 acgccttatc cggcctacaa gtcattaccc gtaggcctga taagcgcagc gcatcaggcg
     5461 taacaaagaa atgcaggaaa tctttaaaaa ctgcccctga cactaagaca gtttttaaag
     5521 gttccttcgc gagccactac gtagacaaga gctcgcaagt gaaccccggc acgcacatca
     5581 ctgtgcgtgg tagtatccac ggcgaagtaa gcataaaaaa gatgcttaag ggatcacgat
     5641 gcagaacagc gctttgaaag cctggttgga ctcttcttac ctctctggcg caaaccagag
     5701 ctggatagaa cagctctatg aagacttctt aaccgatcct gactcggttg acgctaactg
     5761 gcgttcgacg ttccagcagt tacctggtac gggagtcaaa ccggatcaat tccactctca
     5821 aacgcgtgaa tatttccgcc gcctggcgaa agacgcttca cgttactctt caacgatctc
     5881 cgaccctgac accaatgtga agcaggttaa agtcctgcag ctcattaacg cataccgctt
     5941 ccgtggtcac cagcatgcga atctcgatcc gctgggactg tggcagcaag ataaagtggc
     6001 cgatctggat ccgtctttcc acgatctgac cgaagcagac ttccaggaaa ccttcaacgt
     6061 cggttcattt gccagcggca aagaaaccat gaaactcggc gagctgctgg aagccctcaa
     6121 gcaaacctac tgcggcccga ttggtgccga gtatatgcac atcaccagca ccgaagaaaa
     6181 acgctggatc caacagcgta tcgagtctgg tcgcgcgact ttcaatagcg aagagaaaaa
     6241 acgcttctta agcgaactga ccgccgctga aggccttgaa cgttacctcg gcgcaaaatt
     6301 ccctggcgca aaacgcttct cgctggaagg cggtgacgcg ttaatcccga tgcttaaaga
     6361 gatgatccgc cacgctggca acagcggcac ccgcgaagtg gttctcggga tggcgcaccg
     6421 tggtcgtctg aacgtgctgg tgaacgtgct gggtaaaaaa ccgcaagact tgttcgacga
     6481 gttcgccggt aaacataaag aacacctcgg cacgggtgac gtgaaatacc acatgggctt
     6541 ctcgtctgac ttccagaccg atggcggcct ggtgcacctg gcgctggcgt ttaacccgtc
     6601 tcaccttgag attgtaagcc cggtagttat cggttctgtt cgtgcccgtc tggacagact
     6661 tgatgagccg agcagcaaca aagtgctgcc aatcaccatc cacggtgacg ccgcagtgac
     6721 cgggcagggc gtggttcagg aaaccctgaa catgtcgaaa gcgcgtggtt atgaagttgg
     6781 cggtacggta cgtatcgtta tcaacaacca ggttggtttc accacctcta atccgctgga
     6841 tgcccgttct acgccgtact gtactgatat cggtaagatg gttcaggccc cgattttcca
     6901 cgttaacgcg gacgatccgg aagccgttgc ctttgtgacc cgtctggcgc tcgatttccg
     6961 taacaccttt aaacgtgatg tcttcatcga cctggtgtgc taccgccgtc acggccacaa
     7021 cgaagccgac gagccgagcg caacccagcc gctgatgtat cagaaaatca aaaaacatcc
     7081 gacaccgcgc aaaatctacg ctgacaagct ggagcaggaa aaagtggcga cgctggaaga
     7141 tgccaccgag atggttaacc tgtaccgcga tgcgctggat gctggcgatt gcgtagtggc
     7201 agagtggcgt ccgatgaaca tgcactcttt cacctggtcg ccgtacctca accacgaatg
     7261 ggacgaagag tacccgaaca aagttgagat gaagcgcctg caggagctgg cgaaacgcat
     7321 cagcacggtg ccggaagcag ttgaaatgca gtctcgcgtt gccaagattt atagcgatcg
     7381 ccaggcgatg gctgccggtg agaaactgtt cgactggggc ggtgcggaaa acctcgctta
     7441 cgccacgctg gttgacgaag gcattccggt tcgcctgtcg ggtgaagact ccggtcgcgg
     7501 taccttcttc caccgccacg cggtgatcca caaccagtct aacggttcca cttacacgcc
     7561 gctgcaacac atccataacg ggcagggcgc gttccgcgtc tgggactccg tactgtctga
     7621 agaagcagtg ctggcgtttg aatacggtta tgccaccgca gaaccacgca ctctgaccat
     7681 ctgggaagcg cagttcggtg acttcgctaa cggtgctcag gtggttatcg accagttcat
     7741 ctcctctggc gaacagaaat ggggccggat gtgtggtctg gtgatgttgc tgccgcacgg
     7801 ttatgaaggg caggggccgg agcactcctc cgcgcgtctg gaacgttatc tgcaactttg
     7861 tgctgagcaa aacatgcagg tgtgcgtacc gtctaccccg gcacaggttt accacatgct
     7921 gcgtcgtcag gcgctgcgcg ggatgcgtcg tccgctggtc gtgatgtcgc cgaaatccct
     7981 gctgcgtcat ccgctggcgg tttccagcct cgaagaactg gcgaacggca ccttcctgcc
     8041 agccatcggt gaaatcgacg agcttgatcc gaagggcgtg aagcgcgtag tgatgtgttc
     8101 tggtaaggtt tattacgacc tgctggaaca gcgtcgtaag aacaatcaac acgatgtcgc
     8161 cattgtgcgt atcgagcaac tctacccgtt cccgcataaa gcgatgcagg aagtgttgca
     8221 gcagtttgct cacgtcaagg attttgtctg gtgccaggaa gagccgctca accagggcgc
     8281 atggtactgc agccagcatc atttccgtga agtgattccg tttggggctt ctctgcgtta
     8341 tgcaggccgc ccggcctccg cctctccggc ggtagggtat atgtccgttc accagaaaca
     8401 gcaacaagat ctggttaatg acgcgctgaa cgtcgaataa ataaaggata cacaatgagt
     8461 agcgtagata ttctggtccc tgacctgcct gaatccgtag ccgatgccac cgtcgcaacc
     8521 tggcataaaa aacccggcga cgcagtcgta cgtgatgaag tgctggtaga aatcgaaact
     8581 gacaaagtgg tactggaagt accggcatca gcagacggca ttctggatgc ggttctggaa
     8641 gatgaaggta caaccgtaac gtctcgtcag atccttggtc gcctgcgtga aggcaacagc
     8701 gccggtaaag aaaccagcgc caaatctgaa gagaaagcgt ccactccggc gcaacgccag
     8761 caggcgtctc tggaagagca aaacaacgat gcgttaagcc cggcgatccg tcgcttgctg
     8821 gctgaacata acctcgacgc cagcgctatt aaaggcaccg gcgtgggtgg tcgtctgacc
     8881 cgtgaagatg tggaaaaaca tctggcgaaa tccccggcga aagagtctgc accggcagcg
     8941 gctgctccgg cggcgcaacc ggctctggct gcacgtagtg aaaaacgtgt cccgatgact
     9001 cgcctgcgta agcgtgtggc agagcgtctg ctggaagcga aaaactccac cgccatgctg
     9061 accacgttca acgaagtcaa catgaagccg attatggatc tgcgtaagca gtacggtgaa
     9121 gcgtttgaaa aacgccacgg catccgtctg ggctttatgt ccttctacgt gaaagcggtg
     9181 gttgaagccc tgaaacgtta cccggaagtg aatgcttcta tcgacggcga tgacgtggtt
     9241 taccacaact atttcgacgt cagcatggcg gtttctacgc cgcgcggcct ggtgacgccg
     9301 gttctgcgtg atgtcgatac cctcggcatg gcagacatcg agaagaaaat caaagagctg
     9361 gcagtcaaag gccgtgatgg caagctgacc gttgaagatc tgaccggtgg taacttcacc
     9421 atcaccaacg gtggtgtgtt cggttccctg atgtctacgc cgatcatcaa cccgccgcag
     9481 agcgcaattc tgggtatgca cgctatcaaa gatcgtccga tggcggtgaa tggtcaggtt
     9541 gagatcctgc cgatgatgta cctggcgctg tcctacgatc accgtctgat cgatggtcgc
     9601 gaatccgtgg gcttcctgat aacgatcaaa gagttgctgg aagatccgac gcgtctgctg
     9661 ctggacgtgt agtagtttaa gtttcacctg cactgtagac aggataaggc attatcgcct
     9721 tctccggcaa ttgaagcctg atgcgacgct taacgcgtct tatcaggcct acgggaagca
     9781 ccaatgtagg tcggataagg cgcttgcgcc gcatccgaca agcgatgcct gatgcgacac
     9841 ttacgcgtct tatcaggcct acaggtgacc gacaatgccc ggaggcgata cgaaatattc
     9901 ggtctacggt ttaaaagata acgattactg aaggatggac agaacacatg aacttacatg
     9961 aatatcaggc aaaacaactt tttgcccgct atggcttacc agcaccggtg ggttatgcct
    10021 gtactactcc gcgcgaagca gaagaagccg cttcaaaaat cggtgccggt ccgtgggtag
    10081 tgaaatgtca ggttcacgct ggtggccgcg gtaaagcggg cggtgtgaaa gttgtaaaca
    10141 gcaaagaaga catccgtgct tttgcagaaa attggctcgg caagcgtctg gtaacgtatc
    10201 aaacagatgc caatggccaa ccggttaacc agattctggt tgaagcagcg accgatatcg
    10261 ctaaagagct gtatctcggt gccgttgtag accgtagttc ccgtcgtgtg gtctttatgg
    10321 cctccactga aggcggcgtg gaaatcgaaa aagtggcgga agaaactccg cagctgatcc
    10381 ataaagttgc gcttgatccg ctgacaggcc cgatgccgta tcagggacgc gagctggcgt
    10441 tcaaactggg tctggaaggt aaactggttc agcagttcac caaaatcttc atgggtctgg
    10501 cgaccatttt cctggagcgc gacctggcgt tgatcgaaat caacccgctg gtcatcacca
    10561 aacagggtga tctgatttgc ctcgacggca aactgggcgc tgatggcaac gcactgttcc
    10621 gccagcttga tctgcgcgaa atgcgtgacc agtcgcagga agatccgcgt gaagcacagg
    10681 ctgcacagtg ggaactgaac tacgttgcgc tggacggtaa catcggttgt atggttaacg
    10741 gcgcaggtct ggcgatgggt acgatggaca tcgttaaact gcacggcggc gaaccggcta
    10801 acttccttga cgttggcggc ggtgcaacca aagaacgtgt aaccgaagcg ttcaaaatca
    10861 tcctctctga cgacaaagtg aaagtcgttc tggttaacat cttcggcggt atcgttcgtt
    10921 gcgacctgat cgctgacggt atcatcggcg cggtagcaga agtgggtgtt aacgtaccgg
    10981 tcgtggtacg tctggaaggt aacaacgccg aactcggcgc gaagaaactg gctgacagcg
    11041 gcctgaatat tattgcagca aaaggtctga cggatgcagc tcagcaggtt gttgccgcag
    11101 tggaggggaa ataatgtcca ttttaattga taaaaacacc aaggttatct gccagggctt
    11161 tactggtagc caggggactt tccactcaga acaggccatt gcatacggca ctaaaatggt
    11221 tggcggcgta accccaggta aaggcggtac tacccacctc ggcctgccgg tgttcaacac
    11281 cgtgcgtgaa gctgttgctg ctactggcgc taccgcttct gttatctacg taccagcacc
    11341 gttctgcaaa gactccattc tggaagctat tgatgcaggc atcaaactga ttatcaccat
    11401 cactgaaggc atcccgacgc tggatatgct gactgtgaaa gtgaaactgg acgaagccgg
    11461 cgttcgtatg atcggcccga actgcccggg cgttatcact ccgggtgaat gcaaaatcgg
    11521 tatccagccg ggtcacattc acaaaccggg taaagtgggt atcgtttccc gttccggtac
    11581 actgacctat gaagcggtta aacagaccac ggattacggt ttcggtcagt cgacctgtgt
    11641 tggtatcggc ggtgacccga tcccaggctc taactttatc gacatcctcg aaatgttcga
    11701 aaaagatccg cagaccgaag cgatcgtgat gatcggtgag atcggcggta gcgctgaaga
    11761 agaagcggca gcgtacatca aagagcacgt taccaagcca gttgtaggtt acatcgctgg
    11821 tgtgactgcg ccgaaaggca aacgtatggg ccacgcgggt gcgatcattg ccggtgggaa
    11881 agggactgcg gatgagaaat tcgctgctct ggaagccgca ggcgtgaaaa ccgttcgcag
    11941 cctggcggat atcggtgaag cactgaaaac tgttctgaaa taaatatctg taataagaaa
    12001 tagccctcgc cgcttccctc tacaggaatg gcgaagggct gtcggtttcg acatggttgg
    12061 ccatcgtatg atggcctttt ttgtgcttat cgcgatgatt ttcgctgcgc tatcagggta
    12121 aatttatagt catcggtatt aaaagcgttg cggctatatt caaacacccg accatcaact
    12181 aaatatccac gcgatacttt ttcaagaatc ggctttgtct ggctgatatt aagcagacgg
    12241 ctcatctctt cggttggcat cagaggaatg atttcctgtt cgctacgatc gataaccatc
    12301 ttcttcactt cttcaataaa gtgatatttc gaattttcca tgacctgcca ggtgagatcc
    12361 gggaacaacg caagcggcat ccaggtttct tccagcgcca ttggcttttg cttgcgatag
    12421 cgcacgcgct tcacatgcca cacacgatcc tgcgcggtga tttgtagctg ttgctgaaga
    12481 aaatcgtcag ccggaatcac ttcaaatatc aggacttcac tgtgtgtatc gacgtgacgg
    12541 tccgacagtt tttcatcaaa actggttaac tgaaaaatat cgtaattgac ccgctcttct
    12601 ttgacgtaag tcccgctgcc ctgaatgctt tcgaggatct gctgctcgac tagctggcgc
    12661 aaagcctgac gcaccgtaac ccggctgacg ccaaactctg tttgtagcgc tgattcagtg
    12721 ggtaacgcat cgccaggttt aagctcgcca cgcgcaattt gttcacgaat gcgatcggca
    12781 atctgccggt ataagggctt gtgtcccatt tttagtatct cattaatacg aatttagcca
    12841 ttatgcccga taaattcatc ctgtaaataa tgcaaataca atacaaataa tttcaatcaa
    12901 gtgaaattga tcatataatg gtattgtttt atcgggcaca ctggcgcgac tataaaaacg
    12961 atcaagtgag gatcatgatg aatctgacga ctctgaccca ccgcgatgcg ttgcgtctga
    13021 atgcgcgctt taccagccgt gaagaggcca tccacgcgtt gactcaacgt cttgctgctc
    13081 tggggaaaat ttccagtact gagcaatttc tggaagaagt gtatcgccgt gaaagccttg
    13141 gcccgaccgc cttaggtgaa gggttggctg tgccgcatgg caaaactgct gcggtaaaag
    13201 aagcggcgtt tgcggtcgcc acactcagcg agccgcttca gtgggaaggc gttgatggcc
    13261 cggaagcagt tgatttagtg gtgctgctgg cgattccccc caatgaagcg ggtactatgc
    13321 atatgcaact gctgacagcg ctgaccacgc gccttgcgga tgatgagatt cgggcgcgta
    13381 tacagtcggc gacgacgcct gatgagttgc tctcggcgct ggatgacaag ggaggcacgc
    13441 aaccttctgc ctctttttcc aacgcgccaa ctatcgtctg cgtaccggcc tgtccggcgg
    13501 gtattgctca cacctatatg gctgcggaat atctggaaaa agccggacgc aaactcggcg
    13561 taaatgttta cgttgaaaaa caaggcgcta acggcattga agggcgttta acggcggatc
    13621 aactcaatag tgcaaccgcc tgtatttttg cggctgaagt cgccatcaag gagagtgagc
    13681 gttttaatgg cattcccgcg ctttcagtgc ctgttgccga gccgattcgc catgcagaag
    13741 cgttgatcca acaagcgctt accctcaagc gtagcgatga gacgcgtacc gtacagcaag
    13801 atacgcaacc ggtgaaaagt gtcaaaacgg agctgaaaca ggcactgttg agcggaatct
    13861 cttttgccgt accgttgatt gtcgcggggg gcacggtgct ggcggtcgcg gtattactgt
    13921 cgcaaatctt cgggctacaa gatctgttta atgaagaaaa ctcctggctg tggatgtacc
    13981 gcaagctggg cggcgggctg ctcggaattt tgatggtacc ggtgctcgcg gcctataccg
    14041 cctattctct ggcagataaa ccggcgttag cgccaggctt tgcggctgga cttgccgcca
    14101 acatgatcgg ctccgggttt ctcggcgcgg tcgttggcgg attgatagcc ggttacttga
    14161 tgcgctgggt gaaaaatcac ttgcgtctta gcagtaaatt caatggattc ctgacttttt
    14221 atctctaccc ggtgctcggt acgttgggag cgggcagtct gatgctgttt gtggtgggag
    14281 aacctgtcgc atggatcaat aactcgctta ccgcctggct gaacggtctg tcaggaagta
    14341 acgcgctgtt gctgggtgcc attttcggtt ttatgtgttc ctttgatctt ggagggccag
    14401 tgaacaaagc cgcttatgca ttctgcctgg gcgcaatggt gaacggcgtt tacggcccgt
    14461 atgccatttt cgcctccgtc aaaatggttt cggcatttac cgtaaccgct tccacgatgc
    14521 tcgcaccgcg cctgtttaaa gagtttgaaa ttgagaccgg gaaatccacc tggctgttag
    14581 ggctggcagg tattaccgaa ggggcgatcc cgatggcgat tgaagatccg ctgcgggtta
    14641 ttggttcgtt tgtgctgggc tctatggtaa cgggcgctat tgtcggtgcg atgaatatcg
    14701 gcctttcgac acccggtgcc ggcattttct cgctcttttt acttcatgat aatggcgcgg
    14761 gcggtgttat ggcggcaatt ggctggtttg gtgcggcatt ggtgggggct gcaatctcga
    14821 ctgcaattct cctgatctgg cggcgtcacg cggttaagca tggcaactat ctgactgatg
    14881 gcgtaatgcc ataaacaaaa aggaaacgac gatgaaagcg gtatctcgcg ttcacatcac
    14941 cccgcatatg cactgggatc gagagtggta tttcaccacc gaagagtcac gtattctgct
    15001 ggtcaataat atggaagaga tcctgtgccg actggaacag gacaacgaat acaaatatta
    15061 cgtactcgac gggcaaacgg cgatcctcga agattatttc gcggtgaaac cggaaaacaa
    15121 agaccgtgtg aagaaacagg tagaagccgg caagttgatt atcggcccct ggtataccca
    15181 gaccgatacc acgattgttt ctgcggaatc catcgtccgt aatctgatgt acggaatgcg
    15241 tgactgcctc gcgtttggcg agccgatgaa aataggttat ttaccagatt cctttggcat
    15301 gtccgggcaa ctgccgcata tctacaatgg atttggcatt acccgcacca tgttctggcg
    15361 cggatgttcg gagcgccacg gtactgataa aaccgagttt ttgtggcaaa gcagtgacgg
    15421 tagcgaagtg acggcgcagg tgctgccgct gggctacgcc ataggtaagt acttacctac
    15481 cgacgaaaac ggattacgta aacgcctcga cagttatttt gacgtgctgg aaaaagcgtc
    15541 tgtaaccaaa gagattttgc tgccgaatgg tcatgaccag atgccattgc agcaaaatat
    15601 cttcgaagtg atggataagc tacgtgagat ctaccctcaa cgtaagtttg tgatgagccg
    15661 ctttgaagag gtatttgaga agatcgaagc gcagcgtgaa agtctggcca ccctgaaagg
    15721 tgaatttatc gatggcaaat atatgcgcgt acatcgcacc atcggttcca cgcgcatgga
    15781 tatcaaaatt gcccacgcac gtattgaaaa taagattgtt aatctgctgg aaccgctggc
    15841 aacgctggcc tggacgttgg gttttgaata ccaccacggc ttgctggaga aaatgtggaa
    15901 agagatctta aaaaatcatg cccacgacag tatcggttgt tgttgcagtg acaaagttca
    15961 tcgcgaaatt gtcgcccgct tcgaactggc tgaagacatg gcggataatc tgctgcgttt
    16021 ctacatgcgc aaaattgccg ataacatgcc acagagtgat gccgacaaac tcgtgctgtt
    16081 taacctgatg ccctggccgc gggaagaagt tattaacacc actgtgcggc tgcgcgccag
    16141 ccagtttaat ctacgagacg atcgcggtca gcctgtaccg tattttattc gccatgcccg
    16201 tgagatcgat ccaggcctaa tcgatcggca aatagttcat tacggtaatt acgatccctt
    16261 tatggagttt gatatacaga tcaaccagat tgtcccttct atgggctatc gcacgcttta
    16321 tatcgaagcg aatcagcctg gcaacgtgat tgcggcaaaa agtgacgctg aagggatact
    16381 ggaaaatgct ttctggcaaa ttgcgctcaa tgaggatggt tctctgcaac tggtagataa
    16441 agacagcggt gtgcgctatg accgagtatt gc
//
LOCUS       DAJVSY010000091        16454 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.091, whole genome shotgun sequence.
ACCESSION   DAJVSY010000091 DAJVSY010000000
VERSION     DAJVSY010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16454
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.091"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..94)
                     /locus_tag="OQQ19_002604"
     CDS             complement(<1..94)
                     /locus_tag="OQQ19_002604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin Ldr family
                     protein"
                     /protein_id="HCS1804177.1"
                     /translation="MTLAQFAMTFWHDLAAPILAGIITAAIVSWW"
     gene            complement(499..1599)
                     /gene="chaA"
                     /locus_tag="OQQ19_002605"
     CDS             complement(499..1599)
                     /gene="chaA"
                     /locus_tag="OQQ19_002605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-potassium/proton antiporter ChaA"
                     /protein_id="HCS1804178.1"
                     /translation="MSNAQEAVKTRHKEISLIFPVLALVVLFLWGSSQTLPVVIAINL
                     LALIGILSSAFSVVRHADVLAHRLGEPYGSLILSLSVVILEVSLISALMATGDAAPTL
                     MRDTLYSIIMIVTGGLVGFSLLLGGRKFATQYMNLFGIKQYLIALFPLAIIVLVFPMA
                     LPAANFSTGQALLVALISAAMYGVFLLIQTKTHQSLFVYEHEDDSDDDDPHHGKPSAH
                     SSVWHAIWLIIHLIAVIAVTKMNASPLETLLDSMNAPVAFTGFLVALLILSPEGLGAL
                     KAVLNNQVQRAMNLFFGSVLATISLTVPVVTLIAFMTGNELQFALGAPEMVVMVASLV
                     LCHISFSTGRTNVLNGAAHLALFAAYLMTIFA"
     gene            1869..2099
                     /gene="chaB"
                     /locus_tag="OQQ19_002606"
     CDS             1869..2099
                     /gene="chaB"
                     /locus_tag="OQQ19_002606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative cation transport regulator ChaB"
                     /protein_id="HCS1804179.1"
                     /translation="MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKDDRRD
                     DASREETAHKVAWAAVKHEYAKGDDDKWHKKS"
     gene            2257..2952
                     /gene="chaC"
                     /locus_tag="OQQ19_002607"
     CDS             2257..2952
                     /gene="chaC"
                     /locus_tag="OQQ19_002607"
                     /EC_number="4.3.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415736.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-specific
                     gamma-glutamylcyclotransferase"
                     /protein_id="HCS1804180.1"
                     /translation="MITRDFLMNADCKTAFGAIEESLLWSAEQRAASLAATLACRPDE
                     GPVWIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGG
                     RTTGVAYRLPEETLEQELTLLWKREMITGCYLPTWCQLDLDDGCTVNAIVFIMDPRHP
                     EYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDGLNDLLVSVKKLLA
                     ENYPDGVLRPGFA"
     gene            complement(2996..3349)
                     /gene="ychN"
                     /locus_tag="OQQ19_002608"
     CDS             complement(2996..3349)
                     /gene="ychN"
                     /locus_tag="OQQ19_002608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/F sulfur relay family protein YchN"
                     /protein_id="HCS1804181.1"
                     /translation="MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSD
                     AVTAGLRGQKPGEGYNIQQMLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEIGTLV
                     ELAQWTLSADKVLTF"
     gene            3533..4927
                     /gene="ychO"
                     /locus_tag="OQQ19_002609"
     CDS             3533..4927
                     /gene="ychO"
                     /locus_tag="OQQ19_002609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415738.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter invasin YchO"
                     /protein_id="HCS1804182.1"
                     /translation="MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLP
                     DLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHV
                     ESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYFTWSQLGLTQQDNGLVSNV
                     GVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLLANFYQPFAAWHEQT
                     ATQEQRMARGYDLTARMRMPFYQHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGL
                     NYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRY
                     DNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQ
                     ILSLTPGAQANSAEGWTLIMPDWQNGEGASNHWRLSVVVEYNQGQRVSSNEITLTLVE
                     PFDALSNDELRWEP"
     gene            complement(4928..5578)
                     /gene="narL"
                     /locus_tag="OQQ19_002610"
     CDS             complement(4928..5578)
                     /gene="narL"
                     /locus_tag="OQQ19_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator NarL"
                     /protein_id="HCS1804183.1"
                     /translation="MSNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQG
                     IELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRG
                     ADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRE
                     RDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF"
     gene            complement(5571..7367)
                     /gene="narX"
                     /locus_tag="OQQ19_002611"
     CDS             complement(5571..7367)
                     /gene="narX"
                     /locus_tag="OQQ19_002611"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarX"
                     /protein_id="HCS1804184.1"
                     /translation="MLKRCLSPLTLVNQVALIVLLSTAIGLAGMAVSGWLVQGVQGSA
                     HAINKAGSLRMQSYRLLAAVPLSEKDKPLIKEMEQTAFSAELTRAAERDEQLAQLQGL
                     QDYWRNELIPALMRAQNRETVSADVSQFVAGLDQLVSGFDRTTEMRIETVVLVHRVMA
                     VFMALLLVFTIIWLRARLLQPWRQLLAMASAVSHRDFTQRANISGRNEMAMLGTALNN
                     MSAELAESYAVLEQRVQEKTAGLEHKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQ
                     NLTLLRDIELRVYDTDDEENHQEFTCQPDMTCDDKGCQLCPRGVLPVGDRGTTLKWRL
                     ADSHTQYGILLATLPQGRHLSHDQQQLVDTLVEQLTATLALDRHQERQQQLIVMEERA
                     TIARELHDSIAQSLSCMKMQVSCLQMQGDALPASSRELLSQIRNELNASWAQLRELLT
                     TFRLQLTEPGLRPALEASCEEYSAKFGFPVKLDYQLPPRLVPSHQAIHLLQIAREALS
                     NALKHSQASEVVVTVAQNDNQVKLTVQDNGCGVPENAIRSNHYGMIIMRDRAQSLRGD
                     CRVRRRESGGTEVVVTFIPEKTFTDVQGDTHE"
     gene            7706..9097
                     /gene="narK"
                     /locus_tag="OQQ19_002612"
     CDS             7706..9097
                     /gene="narK"
                     /locus_tag="OQQ19_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate transporter NarK"
                     /protein_id="HCS1804185.1"
                     /translation="MSHSSAPERATGAVITDWRPEDPAFWQQRGQRIASRNLWISVPC
                     LLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGR
                     RWTAFSTGILIIPCVWLGFAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPK
                     QKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWI
                     WVPFLAIFTIAAWFGMNDLATSKASIKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAG
                     FAMLSKTQFPDVQILQYAFFGPFIGALARSAGGALSDRLGGTRVTLVNFILMAIFSGL
                     LFLTLPTDGQGGSFMAFFAVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSD
                     ERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACV
                     VITWAVYGRHSKK"
     gene            9613..13335
                     /locus_tag="OQQ19_002613"
     CDS             9613..13335
                     /locus_tag="OQQ19_002613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit alpha"
                     /protein_id="HCS1804186.1"
                     /translation="MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDK
                     IVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWY
                     LYSANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVR
                     SSWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFY
                     DWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGT
                     KTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRY
                     TDMPMLVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIG
                     FRWGEKGKWNLEQRDGKTGEETELQLSLLGSQDEIAEVGFPYFGGDGTEHFNKVELEN
                     VLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTPAWA
                     EQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCG
                     CVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETV
                     TAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKAGMNPVD
                     YTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQ
                     GKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDM
                     NTSDMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHD
                     SAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERAYPATYERFTSIGPLMEKIGNGG
                     KGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAW
                     AALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNV
                     HELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEVIGQKSNGNPEKALN
                     FLTPHQKWGIHSTYSDNQLMLTLGRGGPVVWLSEADAKELGIADNDWIEVYNSNGALT
                     ARAVVSQRVPAGMTMMYHAQERIVNLPGSEITGQRGGIHNSVTRITPKPTHMIGGYAH
                     LAYGFNYYGTVGSNRDEFVVVRKMKNIDWLDGEGND"
     gene            13353..14891
                     /gene="narH"
                     /locus_tag="OQQ19_002614"
     CDS             13353..14891
                     /gene="narH"
                     /locus_tag="OQQ19_002614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit beta"
                     /protein_id="HCS1804187.1"
                     /translation="MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGVEYAWFNNV
                     ETKPGQGFPTDWENQEKYKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYE
                     PFDFDYQNLHTAPEGSKSQPIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKN
                     FDNIQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCR
                     GWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYD
                     ADAIERAASTENEKDLYQRQLEVFLDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMA
                     MEWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLAN
                     LLTAGDTKPVLRALKRMLAMRHYKRAETVDGKVDTRALEEVGLTEAQAQEMYRYLAIA
                     NYEDRFVVPSSHRELAREAFPEKNGCGFTFGDGCHGSDTKFNLFNSRRIDAIDVTSKT
                     EPHP"
     gene            14888..15598
                     /gene="narJ"
                     /locus_tag="OQQ19_002615"
     CDS             14888..15598
                     /gene="narJ"
                     /locus_tag="OQQ19_002615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase molybdenum cofactor assembly
                     chaperone"
                     /protein_id="HCS1804188.1"
                     /translation="MIELVIVSRLLEYPDAALWQHQQEMFEVIAASKNLSKEDAHALG
                     IFLRDLTAMDPLDAQAQYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLLAQYEQHG
                     LQLNSRELPDHLPLYLEYLSQLPQSEAVEGLKDIAPILALLSARLQQRESRYAVMFDL
                     LLKLANTAIDSDKVAEKIADEARDDTPQALDAVWEEEQVKFFADKGCGDSAITAHQRR
                     FAGAVAPQYLNITTGGQH"
     gene            15598..16275
                     /gene="narI"
                     /locus_tag="OQQ19_002616"
     CDS             15598..16275
                     /gene="narI"
                     /locus_tag="OQQ19_002616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="respiratory nitrate reductase subunit gamma"
                     /protein_id="HCS1804189.1"
                     /translation="MQFLNMFFFDIYPYIAGAVFLIGSWLRYDYGQYTWRAASSQMLD
                     RKGMNLASNLFHIGILGIFAGHFFGMLTPHWMYEAWLPIEVKQKMAMFAGGASGVLCL
                     IGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLV
                     GWAQSVVTFHGGASQHLDGVAFIFRLHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRKY
                     QLVRARH"
BASE COUNT         3956 a         4121 c         4404 g         3973 t
ORIGIN      
        1 gccaccagct gacaatcgct gcggtaataa tccccgccag gatcggtgct gccaggtcgt
       61 gccagaaagt catggcaaac tgcgcgagcg tcatatagcc gccttgttgt aatgacaaca
      121 ttttgcggct attcttgaag tgtctggttt caagattagc ccccgttttg ttgtcaggtt
      181 ttacctctca acgtgcgggg gttttctctt tccagcaacc aatgccacca gggataaagc
      241 ccccgcaaca ttgcgcctca ccggataatt ccggcttggt gtggatacta cgtctcaatt
      301 catcttcact tcatccctga aatgtttgca ataaagagta cattccggct tttcaacagc
      361 tgttgcagtg gtttcgtgca ggttgtggta caggctcgca attctgatta acgagctgtc
      421 caggtagtat gaagaaatac aataagcagg aatttatctt atctcccccg atttccgtca
      481 tcggaggaga tataactgtc aggcaaatat cgtcatcaaa taggcggcaa acagtgccag
      541 atgcgctgcg ccattgagca cgttagtacg tccggtggag aaggagatat ggcacagcac
      601 taaagaggcc accatcacca ccatttctgg cgcaccaagt gcaaactgta attcgttacc
      661 cgtcataaag gcaattagcg tgacgacagg tacggtaagt gaaatggttg ctaacactga
      721 accaaagaac agattcatcg cgcgctggac ctggttgttc aacactgctt ttaacgcacc
      781 taaaccttcc ggcgacagaa tcaacagagc caccaggaag ccagtaaagg cgacaggggc
      841 attcatgctg tcgagcaatg tctccagcgg gctggcattc attttggtga ctgcaataac
      901 ggcaatcaga tggataatca accagatagc atgccacacg ctgctatggg cagacggttt
      961 accgtgatgc gggtcgtcgt catcactgtc atcttcgtgc tcgtagacaa acaaactttg
     1021 atgcgttttg gtctggatca gcaaaaatac gccatacatt gccgcagaaa ttaatgctac
     1081 cagtaacgcc tgaccggttg aaaaattcgc cgcaggcaga gccattggaa ataccagtac
     1141 gattatcgcc agggggaaca gcgcaattaa atactgcttg ataccaaaca gattcatata
     1201 ttgggtggca aacttacgac cgcccaacaa taatgaaaag ccaaccagcc caccggtaac
     1261 aatcataatg attgaataga gcgtatcacg cattagcgtt ggcgcggcgt cgccggttgc
     1321 cattaaagct gaaatcaaac tgacttcaag aataaccact gaaaggctaa gaataagcga
     1381 accgtaaggt tctcccaggc gatgggctaa tacgtccgca tgacggacaa cactaaaggc
     1441 gctacttaaa ataccaataa gcgcaagaag attgatggca atgaccactg gtagtgtctg
     1501 gctgcttccc cacaggaaca gcactaccag cgccagaacc gggaaaataa gcgaaatctc
     1561 cttgtggcgg gtttttaccg cctcttgagc atttgacatt atggttatcc ctttgcagat
     1621 gaatttatcg aaaatgtaaa aaataggtag gaaaaataac agaaagtgtc tggatatcgg
     1681 taacatttta cgaattttta ccccactgtc gattttttac tcattgggac ataaaaataa
     1741 gtattacgtt tagacaatgt ttgttttagc gtttcttaag aacagtctga catgaaaatt
     1801 cttatgtttt ggcaagagta gatattgttg accacactta atgttcaact ttgtaaaagg
     1861 agtcaacgat gccgtataaa acgaaaagcg atctgccgga aagcgtaaag cacgttctac
     1921 cgtctcatgc ccaggatatc tataaagaag cgttcaacag cgcatgggat caatataaag
     1981 ataaagacga tcggcgtgat gacgccagtc gcgaagaaac cgcgcataaa gtggcctggg
     2041 ctgctgtgaa gcatgaatat gccaaagggg atgatgataa atggcataaa aaatcgtaaa
     2101 accggtagct tagttaaagc tattcgtgcg gtgttgcctt gcaagtggtc cgtggattgc
     2161 atattgtccc gttagtggtt tcaaaatgag cagtaaaaat gtccggaaga caccaaaaag
     2221 ttgtcgcagg gaagtatgca gtggcggagg tgtaaggtga taacgcgtga tttcttgatg
     2281 aatgccgatt gtaaaacggc atttggtgcc attgaagaat cactcttatg gtcagcagag
     2341 caacgagcgg cttcgctggc ggcgacgctg gcttgtcgac ctgatgaggg accggtgtgg
     2401 atcttcggtt atggatcgtt gatgtggaat ccggcactgg agtttaccga gtcgtgcacc
     2461 ggtacactgg ttggatggca tcgcgcgttt tgcctgcgcc tgaccgccgg gcgcgggact
     2521 gcgcaccagc cgggacggat gcttgcactg aaagagggcg gacgcactac aggcgtcgcc
     2581 tatcgactgc cagaagagac gctggagcag gaactaaccc tgttgtggaa gcgcgagatg
     2641 attaccggct gttatctgcc aacctggtgt cagcttgatc ttgatgatgg atgcacagta
     2701 aacgccattg tgtttattat ggacccgcga catccagaat atgaatctga cactcgcgct
     2761 caggtcatcg cgccgttgat tgcggcggcg agcggtccgc tgggaaccaa cgcacaatac
     2821 ctgttttcac tggaacagga gcttatcaaa ctgggaatgc aggacgatgg gctgaatgat
     2881 ttgctggtat cggtaaaaaa actgctggcg gagaattatc cggatggtgt gttacggccg
     2941 ggattcgcct gagtaaactt cccgcatagt ggggcgtcag acgccccctc aaacattaaa
     3001 atgtgagcac tttatcggct gacagcgtcc attgcgccag ttccacaaga gtaccgattt
     3061 ccaccccatc aatcagagga agtgtactaa tcccgcgccc gtcggtacag gttttgcaca
     3121 atttcaccgg tacattctga gcggtaagga tctccagcat ttgctgaatg ttgtagcctt
     3181 cccctggttt ttgcccgcgc aacccggctg tgaccgcatc agacatgagg aacagacgca
     3241 gatccagatt gctctcctgc tctcgtaacg caatggccag ccgcaagctg ttaaacaagg
     3301 attcgctccc gtaaggtgcg ccattggcaa cgatcacgat tttttgcatt atttactcct
     3361 gtattcaggg aattagacac tcatcttcta tcttactgct tctgcagcgt ctgaccaatc
     3421 ggtcacattt ttaaggattt tcctgaaagc gcgagaaaat acgacaaaag ttgccagtaa
     3481 tcgttattct ttaaggctat ggttttcatt attaccggaa gttaccgacg ttttgagccg
     3541 tttcgttcct cgcattatcc cgttttattt actcttgctt gtagcaggcg gtacagctaa
     3601 cgcacaatct accttcgagc aaaaagcggc aaatcccttt gataataaca atgatggtct
     3661 gccggattta ggcatggctc ccgaaaatca tgatggggaa aaacactttg ctgaaattgt
     3721 gaaagatttc ggcgaaacca gtatgaatga taacgggctg gatactggcg agcaggcaaa
     3781 agctttcgca ttgggaaaag tccgcgacgc gcttagtcaa caggttaatc agcacgtaga
     3841 gtcctggcta tcaccgtggg gaaatgccag tgttgacgtc aaagtggata acgaaggaca
     3901 tttcaccggc agtcgtggaa gctggtttgt gccgttacaa gataatgatc gttatttcac
     3961 ctggagccag cttggtctta ctcagcagga taatgggttg gtgagcaatg tgggcgttgg
     4021 gcaacgctgg gcgcgtggca actggctggt gggttataac actttttatg acaacttgct
     4081 ggacgaaaat cttcagcgag cgggctttgg tgccgaagcg tggggcgaat atttgcgatt
     4141 attggcaaac ttttatcagc cgtttgctgc atggcatgaa cagacagcca cgcaggaaca
     4201 acggatggcg cgcgggtacg acctgacagc tcggatgcgc atgccgttct atcaacacct
     4261 caataccagt gtcagcctag aacagtattt tggtgatcgt gttgatttgt ttaactctgg
     4321 tacgggttat cacaatcccg tcgcgttgag tctgggatta aattacaccc ctgtgccatt
     4381 agtcactgtg acggctcagc ataaacaggg tgaaagtggc gagaatcaaa ataacctcgg
     4441 gctgaatctt aattaccgct ttggtgtacc gctcaaaaaa caactttctg cgggcgaggt
     4501 tgccgaaagt cagtcgttac gtggtagtcg ctatgacaat ccgcagcgaa ataatctacc
     4561 gactcttgag taccgacagc gaaaaacgtt aacggtgttt ctggcgacac cgccgtggga
     4621 tctaaaacct ggcgaaacag tgccgctgaa attacaaatc cgcagtcgtt acggtattcg
     4681 gcaactgatt tggcagggcg atacgcagat attaagtttg acgccgggcg cacaagccaa
     4741 cagcgcggag ggctggacgc tgatcatgcc tgactggcag aacggggaag gggcaagcaa
     4801 tcactggcga ttgtcggtgg tggtggaata taaccagggg cagcgtgtct cctccaatga
     4861 gatcacgcta acgcttgtcg aaccgttcga tgcattgtca aacgacgaac tgcgctggga
     4921 accgtaatca gaaaatgcgc tcctgatgca cccataccgc tgcttccacg cgagacttga
     4981 gcttcatttt cttcagcatg tgcttgacgt gcacttttac tgtgctttcg gtgatatcca
     5041 ggcggcgggc aatcatcttg ttcggcaaac cctgggcaat cagcttgaga atatcgcgct
     5101 cgcgtggggt taactggtta acatcgcgct cagtagtggc acggttagcg cgcaagctgg
     5161 cggccagaac aggcgttaat gcttcgctta ataccatttc gccagcagct gcctgatgca
     5221 atgctttcag cagatcttcc ggttccatat cttttaacag ataaccatcc gcgccgcgtt
     5281 tcagtgcggt gaccacatct tcttcatggt tagagacgct gaataccaca atgcgccctg
     5341 agagggactt ttcgcgcagt ttatccagcg tttccagacc gttcatgccg ggcatattga
     5401 gatctaacag gatcagatcg ggatcaagag actccgccag ttcaataccc tgttcgccat
     5461 tactcgcttc gccaaccacg gtgatatctg gtgccatact gataagctgt tttacgccag
     5521 ttcgcagcat cgggtgatcg tcgatcagca ggatagtagc cggttcctga ttactcatgg
     5581 gtatctcctt ggacgtctgt gaaagttttt tcgggaataa aggtgaccac cacttcggtg
     5641 ccacctgatt cacgacggcg gacgcggcaa tcgcctcgta aactttgcgc acggtcgcgc
     5701 attattatca tgccgtagtg attgctgcgg atggcatttt caggcacgcc gcagccgtta
     5761 tcttggacgg tcagtttgac ctgattatcg ttttgcgcca ccgtcaccac gacctcactc
     5821 gcttgcgaat gtttgagggc gttacttaat gcctcacggg caatttgcaa caagtggatt
     5881 gcctgatgtg aaggcaccag acgaggcggc aattgataat ccagcttcac cgggaagcca
     5941 aatttggcgc tgtactcttc gcaactcgcc tccagcgccg gacgtaatcc aggctcggtg
     6001 agctgcaagc ggaatgtggt gagcaattca cgcaactgcg cccaggatgc attcagttcg
     6061 ttacggatct gacttaacag ttcgcggctg cttgctggca gcgcatcgcc ctgcatctgt
     6121 aaacaactca cctgcatctt catgcaagag agagattggg caatagaatc atgcagttcg
     6181 cgcgcaatgg tggcacgctc ttccatcacg atcaactgtt gctgacgttc ctgatggcga
     6241 tccagcgcca gcgtggcggt gagttgttca accagggtat ccaccagttg ttgttgatca
     6301 tggctaagat gacgcccctg cggcagggtc gccagcaaaa taccgtactg cgtatgagag
     6361 tcagccagcc gccacttcag ggttgtgccg cgatcaccaa cgggtaatac gccgcgcggg
     6421 cagagctggc agcctttatc atcacaagtc atatctggct ggcaggtaaa ctcctgatga
     6481 ttctcttcat catcagtgtc atacacccgc agttcgatat cacgtagcag ggttaaattc
     6541 tgtaagccgt tgagtacagg tgacaggcgt tcacacagcg gggcgcggga atgcaaacgg
     6601 cggttagcct gccataaaaa agagaggatc tgatttttat gctccagccc ggcggttttc
     6661 tcctgaaccc gctgctcaag tacggcataa ctttcggcca gttctgcaga catattgttc
     6721 aatgcagttc caagcatcgc catttcgttg cgcccgctga tgttcgcgcg ttgggtaaaa
     6781 tcgcgatgac tgacggcact cgccattgcc agcagttgcc gccacggttg tagcagtcgc
     6841 gcccgcaacc agataatagt gaacaccagt aaaagtgcca taaataccgc cattacccga
     6901 tggaccagta ccactgtctc aatgcgcatt tccgtggtgc ggtcaaaacc agataccagc
     6961 tgatcaagcc cggcaacaaa ctggctgaca tccgctgaca ccgtttcgcg gttttgtgca
     7021 cgcatcagtg cagggatcag ttcattacgc cagtaatctt gtaaaccctg taattgcgcc
     7081 agttgttcgt ctcgttctgc tgctcgagtt aactcggcgc taaatgccgt ttgttccatc
     7141 tctttaatta agggcttgtc tttctcactt aatggcactg ccgccaacag acggtaactt
     7201 tgcatgcgca gcgatcccgc tttgttgatc gcatgggcgc tgccctgaac gccttgcacc
     7261 agccagccag aaaccgccat ccctgccagt ccaatagcag tagaaagcaa cacaataagc
     7321 gcaacctgat taaccagggt gagcggagag agacaacgtt taagcatgta aacctcttcc
     7381 ttcaggcttt aaatgagcaa taaccttaat gaatgtgacg atacattctg gaatggcagt
     7441 attctcggct attggctgaa gtatacccat acccggaaag agttactcct tatttgccgt
     7501 gtggttagtc gctttacatc ggtaagggta gggattttac agcaccgtga aaaatctcat
     7561 aatttttatg aaatcactgt actcactatg ggtaatgata aatatcaatg atagataaag
     7621 ttatcttatc gtttgattta catcaaattg cctttagcta cagacactaa ggtggcagac
     7681 atcgaaacga gtatcagagg tgtctatgag tcactcatcc gcccccgaaa gggctactgg
     7741 agctgtcatt acagattggc gaccggaaga tcctgcgttc tggcaacaac gcggtcaacg
     7801 tattgccagc cgtaacctgt ggatttccgt tccctgtctg ctgctggcgt tttgcgtatg
     7861 gatgttgttc agcgctgttg cggtgaactt accgaaagtc ggttttaatt ttacgaccga
     7921 tcagctattt atgttgactg cgctgccttc ggtttctggc gcgttattac gtgttccata
     7981 ctcctttatg gttcctatct tcggtggtcg tcgctggacg gcgttcagca ccggtattct
     8041 gattattcct tgcgtctggc tgggttttgc cgtgcaggat acctccacgc cttatagcgt
     8101 cttcatcatc atctctctgc tatgcggctt tgctggcgcg aacttcgcat ccagtatggc
     8161 aaacatcagc ttcttctttc cgaaacagaa gcagggtggc gcgctgggtc tgaatggtgg
     8221 tctgggaaac atgggcgtca gcgtcatgca gttggttgct ccgctggtgg tatcactgtc
     8281 gattttcgca gtatttggta gccagggcgt caaacagccg gatgggactg agctgtatct
     8341 ggcgaatgcg tcctggatat gggtgccgtt ccttgccatc ttcaccattg cggcgtggtt
     8401 tggcatgaac gatcttgcta cctcgaaagc ctccatcaag gagcagttgc cggtactcaa
     8461 acggggtcat ctgtggatta tgagcctgct gtatctggca accttcggct ccttcatcgg
     8521 cttctccgcg ggctttgcaa tgctgtcaaa aacgcagttc ccggatgttc agattctgca
     8581 atacgctttc ttcgggccgt ttattggtgc gctggcgcgt tctgcaggtg gtgcattatc
     8641 tgaccgtctg ggcggaactc gtgtcacgct ggtgaacttt attctgatgg cgattttcag
     8701 cggcctgctg ttcctgacct taccgactga cgggcagggc ggaagcttca tggcgttctt
     8761 cgcggtcttc ctggcgctgt tcctgacagc tgggctgggt agtggttcca ctttccagat
     8821 gatttcagtg atcttccgta aactgacaat ggatcgcgtg aaagcagaag ggggttctga
     8881 cgaacgtgcg atgcgtgaag cggcaaccga cacggcggcg gcgctgggtt tcatctctgc
     8941 gattggcgcg attggtggct tctttatccc gaaagcgttt ggtagctcgc tggcattaac
     9001 gggttcgcca gtcggcgcaa tgaaggtatt tttgattttc tatatcgcct gcgtagtgat
     9061 tacctgggcg gtatatggtc ggcattctaa aaaataaacc gttactcgtc atactccggg
     9121 ttacatgtgc tgcggctgcg ttcattcacc ccagtcactt actttagtaa gctcctggga
     9181 ttcattcact tgccgccttc ctgtaaaccg aattatatag agtaaaatat ttgattatcc
     9241 tttgcgcggc atgatgtcgc gcttttttta agcgttattt agttacaaca tactaatgtt
     9301 atatggttta tttcgccgga tttcattaag agccattaat atgttaccca tggggaatac
     9361 tccttaatac ccatctgcat aaaaatctta atagtttaaa taactacagg tataaaacgt
     9421 cttaatttac agtctgttat gtggtggctg ttgattatcc taaaggggta tcttaggaat
     9481 ttactttatt tttcatcccc atcactcttg atcgttatca attcccacgc tgtttcagag
     9541 cgttaccttg cccttaaaca ttagcaatgt cgatttatca gagggccgac aggctcccac
     9601 aggagaaaac cgatgagtaa attcctggac cggtttcgct acttcaaaca gaagggtgaa
     9661 acctttgccg atgggcatgg ccagcttctc aataccaacc gtgactggga ggatggatat
     9721 cgccagcgtt ggcagcatga caaaatcgtc cgctctaccc acggggtaaa ctgcaccggc
     9781 tcctgcagct ggaaaatcta cgtcaaaaac ggtctggtca cctgggaaac ccagcagact
     9841 gactatccgc gtacccgtcc ggatctgcca aaccatgaac ctcgcggctg cccgcgcggt
     9901 gccagctact cctggtatct ttacagtgcc aaccgcctga aatacccgat gatgcgcaaa
     9961 cgcctgatga aaatgtggcg tgaagcgaag gcgctgcata gcgatccggt tgaggcatgg
    10021 gcttctatca ttgaagacgc cgataaagcg aaaagcttta agcaggcgcg tggacgcggt
    10081 ggatttgttc gttcttcctg gcaggaggtg aacgaactga tcgccgcatc taacgtttac
    10141 accatcaaaa actacggccc ggaccgtgtt gctggtttct cgccaattcc ggcaatgtcg
    10201 atggtttctt acgcatcggg tgcacgctat ctctcgctga ttggcggtac ttgcttaagc
    10261 ttctacgact ggtactgcga cctgcctcct gcgtctccgc aaacctgggg cgagcaaact
    10321 gacgtaccgg aatctgctga ctggtataac tccagctaca tcatcgcctg gggttcaaac
    10381 gtgccgcaga cgcgtacccc ggatgctcac ttctttactg aagtgcgtta caaaggcacc
    10441 aaaactgttg ccgtcacacc agactacgct gaaatcgcca aactgtgcga tctgtggctg
    10501 gcaccgaaac agggcaccga tgcggcaatg gcgctggcga tgggccacgt aatgctgcgt
    10561 gaattccacc tcgacaaccc aagccagtat ttcaccgact atgtgcgtcg ctacaccgac
    10621 atgccgatgc tggtgatgct ggaagaacgc gacggttact acgctgcagg tcgtatgctg
    10681 cgcgctgctg atctggttga tgcgctgggc caggaaaaca atccggaatg gaaaactgtc
    10741 gcctttaata ccaatggcga aatggttgcg ccgaacggtt ctattggctt ccgctggggc
    10801 gagaagggca aatggaatct tgagcagcgc gacggcaaaa ctggcgaaga aaccgagctg
    10861 caactgagcc tgctgggtag ccaagatgag atcgctgagg taggcttccc gtactttggt
    10921 ggcgacggca cggaacactt caacaaagtg gaactggaaa acgtgctgct gcacaaactg
    10981 ccggtgaaac gcctgcaact ggctgatggc agcaccgccc tggtgaccac cgtttatgat
    11041 ctgacgctgg caaactacgg tctggaacgt ggcctgaacg acgttaactg tgcaaccagc
    11101 tatgacgatg tgaaagctta taccccggcc tgggccgagc agattaccgg cgtttctcgc
    11161 agccagatta ttcgcatcgc ccgtgaattt gccgataacg ctgataaaac gcacggtcgt
    11221 tcgatgatta tcgtcggtgc ggggctgaac cactggtatc acctcgatat gaactatcgt
    11281 ggtctgatca acatgctgat tttctgcggc tgtgtcggtc agagcggggg cggctgggcg
    11341 cactatgtag gtcaggaaaa actgcgtccg caaaccggct ggcagccgct ggcgtttgcc
    11401 cttgactggc agcgtccggc gcgtcacatg aacagcactt cttatttcta taaccactcc
    11461 agccagtggc gttatgaaac cgtcacggcg gaagagttgc tgtcaccgat ggcggacaaa
    11521 tcccgctata ccggacactt gatcgacttt aacgtccgtg cggaacgcat gggctggctg
    11581 ccgtctgcac cgcagttagg cactaacccg ctgactatcg ctggcgaagc ggaaaaagcc
    11641 gggatgaatc cggtggacta tacggtgaaa tccctgaaag agggttccat ccgttttgcg
    11701 gcagaacaac cagaaaacgg taaaaaccac ccgcgcaacc tgttcatctg gcgttctaac
    11761 ctgctcggtt cttccggtaa aggtcatgag tttatgctca agtacctgct ggggacggag
    11821 cacggtatcc agggtaaaga tctggggcaa cagggcggcg tgaagccgga agaagtggac
    11881 tggcaggaca atggtctgga aggcaagctg gatctggtgg ttacgctgga cttccgtctg
    11941 tcgagcacct gtctctattc cgacatcatt ttgccgacgg cgacctggta cgaaaaagac
    12001 gacatgaata cttcggatat gcatccgttt attcacccgc tgtctgcggc ggtcgatccg
    12061 gcctgggaag cgaaaagcga ctgggaaatc tacaaagcca tcgcgaagaa attctccgaa
    12121 gtgtgcgtcg gccatctggg taaagaaacc gacatcgtca cgctgcctat ccagcatgac
    12181 tctgccgctg aactggcgca gccgctggat gtgaaagact ggaaaaaagg cgagtgcgac
    12241 ctgatcccag gtaaaaccgc gccacacatt atggtcgtag agcgcgctta tccggcgact
    12301 tacgaacgct ttacctctat cggcccgctg atggagaaaa tcggtaatgg cggtaaaggg
    12361 attgcctgga acacccagag cgagatggat ctgctgcgta agctcaacta caccaaagcg
    12421 gaaggtccgg cgaaaggcca gccgatgctg aacaccgcaa ttgatgcggc agagatgatc
    12481 ctgacactgg caccggaaac caacggtcag gtagccgtga aagcctgggc tgccctgagc
    12541 gaatttaccg gtcgtgacca tacgcatctg gcgctgaata aagaagacga gaagatccgc
    12601 ttccgcgata ttcaggcaca gccgcgcaaa attatctcca gcccgacctg gtctggtctg
    12661 gaagatgaac acgtttctta caacgccggt tacaccaacg ttcacgagct gatcccatgg
    12721 cgtacgctct ctggtcgtca gcaactgtat caggatcacc agtggatgcg tgatttcggt
    12781 gaaagcctgc tggtttatcg tccgccgatc gacacccgtt cggtgaaaga agtgataggc
    12841 cagaaatcca acggcaaccc ggaaaaagcg ctcaacttcc tgacgccgca ccagaagtgg
    12901 gggatccact ccacctacag cgacaaccag ttgatgctga ccttaggtcg cggtggcccg
    12961 gtggtctggc tgagcgaagc cgatgccaaa gagctgggca ttgccgataa cgactggatt
    13021 gaagtttaca acagcaacgg tgcgctgact gcccgtgcgg ttgtcagcca gcgtgttccg
    13081 gcagggatga ccatgatgta ccacgcgcag gaacgtatcg ttaacctgcc gggttcggaa
    13141 attactggcc agcgtggggg gatccacaac tcggtcaccc gtatcacgcc gaaaccgacg
    13201 catatgattg gtggctatgc ccatctggca tacggcttta actactacgg caccgtaggt
    13261 tctaaccgcg atgagtttgt tgtagtgcgt aagatgaaga acattgactg gttagatggc
    13321 gaaggcaatg actaggtaca ggagagcgta aaatgaaaat tcgttcacaa gtcggcatgg
    13381 tgctgaatct cgataagtgc atcggctgcc acacctgttc agttacctgt aaaaacgtct
    13441 ggaccagccg tgaaggcgtg gagtacgcgt ggttcaacaa cgtggaaacc aagccgggtc
    13501 agggcttccc gactgactgg gaaaaccagg aaaaatacaa aggcggctgg atccgtaaaa
    13561 tcaacggcaa actgcagccg cgcatgggta accgtgccat gttgctgggt aaaatcttcg
    13621 ctaacccgca tctgccgggg atcgacgatt attacgagcc gttcgatttt gactatcaga
    13681 acctgcatac cgcgccggaa ggcagcaaat cgcagccgat tgcccgtccc cgttcgctga
    13741 ttaccgggga acggatggcg aaaatcgaaa aagggccgaa ctgggaagat gacctgggtg
    13801 gtgagtttga caaactggcg aaagacaaga acttcgacaa catccagaag gcgatgtata
    13861 gccagttcga aaacaccttt atgatgtatt tgccgcgcct gtgcgaacac tgcctgaacc
    13921 cggcatgtgt ggcgacctgc ccgagcggtg cgatttacaa gcgtgaagaa gatggcatcg
    13981 tcctgatcga ccaggataaa tgccgtggct ggcgtatgtg catcaccgga tgcccgtaca
    14041 aaaaaatcta cttcaactgg aagagcggta agtctgagaa gtgcatcttc tgctatccgc
    14101 gtattgaagc gggtcagccg accgtgtgct cagaaacctg tgtcggtcgt atccgttatc
    14161 ttggcgtgct gctgtacgat gccgacgcga ttgaacgtgc agccagcacc gagaacgaga
    14221 aagatcttta ccagcgtcag ctggaggtgt tcctcgatcc gaacgatccg aaagtcatcg
    14281 agcaggcgat taaagacggt attccgctga gcgttattga agccgcacag cagtcgccgg
    14341 tttataaaat ggcaatggaa tggaaactgg cgctgccgct gcatccagaa tatcgcacac
    14401 tgccgatggt ctggtacgtg ccgcctctgt ctccgattca gtctgcagca gacgcgggtg
    14461 agctgggtag caacggcatt ctgccagacg tcgaaagctt gcgtattccg gtacagtatc
    14521 tggcgaatct gctgaccgcc ggtgatacca aaccggtact gcgcgcactg aaacgtatgc
    14581 tggcgatgcg tcattacaaa cgtgctgaaa ccgttgacgg taaagttgat acccgtgcgc
    14641 tggaagaggt cggtctgacc gaagcccagg cacaggagat gtaccgttat ctggctattg
    14701 ctaactacga agatcgcttt gtggtgccga gtagtcatcg tgaactggca cgggaagcct
    14761 tcccggagaa aaatggctgc ggctttacct ttggtgatgg ctgccacggc tcagatacca
    14821 aattcaatct gttcaacagc cgtcgtatcg atgccatcga tgtgaccagc aaaacggagc
    14881 cgcatccatg atcgaactcg tgattgtatc gcgtctcctt gaatatccgg atgctgcctt
    14941 atggcagcat caacaagaga tgtttgaggt gattgctgcg tcgaaaaatc tgtcgaaaga
    15001 agatgcccat gcgctgggca ttttcctgcg cgatttaacg gcgatggatc cgctcgatgc
    15061 ccaggcccag tacagcgaac tgttcgaccg tggccgcgcc acgtcactgt tgctatttga
    15121 acatgttcac ggtgaatccc gtgaccgcgg ccaggcgatg gtggacctgc tggcgcagta
    15181 cgagcagcac ggcttgcagt taaacagccg cgaattaccg gaccatctgc cgctgtatct
    15241 ggagtacctg tcgcagctgc cgcaaagcga agccgtggaa ggtttgaaag atatcgcgcc
    15301 gattctggca ttgctgagcg cgcgtctgca acagcgtgaa agccgttatg ccgtgatgtt
    15361 tgatctgctg ctgaaattgg ccaataccgc tatcgacagc gacaaagtgg cggaaaaaat
    15421 tgccgacgaa gcgcgcgatg atacgccgca ggcgctggat gctgtctggg aagaagagca
    15481 ggttaaattc tttgctgaca aaggctgcgg tgattcagca atcactgctc atcagcgtcg
    15541 ctttgccggt gccgtcgcgc cgcaatatct gaatatcacc accggaggac agcactaatg
    15601 caattcctga atatgttctt ctttgatatc tacccgtaca tagccggggc ggtcttcctg
    15661 attggtagct ggctgcgtta tgactacggg cagtacacct ggcgcgcggc gtccagccag
    15721 atgctggatc gcaaagggat gaacctggcg tcgaacctgt tccatatcgg tattctgggg
    15781 atttttgctg gtcacttctt cggtatgctg acgccgcact ggatgtatga agcctggctg
    15841 ccgattgaag tgaaacagaa aatggcgatg tttgctggtg gtgccagcgg cgtgctgtgt
    15901 ctgattggcg gcgtgctgtt gctgaagcgt cgtctgttca gcccacgcgt gcgtgcaacc
    15961 actaccggag cggatatcct gatcctgtcg ctgctcgtta tccagtgcgc gctgggcctg
    16021 ttgaccattc cgttctccgc tcagcatatg gacggtagcg agatgatgaa actggttggc
    16081 tgggcgcagt cggtggtgac cttccacggt ggcgcttctc aacacctcga tggtgtggcg
    16141 tttatcttcc gtctgcacct ggtgctgggg atgacgttat tcctgctgtt cccgttctcg
    16201 cgtctggtac acatctggag cgtaccggtg gagtatctga cacgtaagta ccagctggtg
    16261 cgcgctcgtc actaaacgaa ttttagttca catagaccct gcttcggcgg ggttttttat
    16321 gggcacggtg cggggtgagt tgtcggatgc gcttcgctta tccgacctac aggggaggat
    16381 attgtaggcc cggtaaacgt ggtgccatcg ggcaaaatta gctcggagta acaggttttg
    16441 attattcaag gaag
//
LOCUS       DAJVSY010000092        16381 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.092, whole genome shotgun sequence.
ACCESSION   DAJVSY010000092 DAJVSY010000000
VERSION     DAJVSY010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16381
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.092"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..190
                     /locus_tag="OQQ19_002617"
     CDS             <1..190
                     /locus_tag="OQQ19_002617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001402762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804190.1"
                     /translation="DMLNPTKDTNWNSTCIYKSRHKMLPVNLTQETLFNSKSQDKHAL
                     FPIFTASWRAYRIMNKGA"
     gene            413..910
                     /gene="ubiC"
                     /locus_tag="OQQ19_002618"
     CDS             413..910
                     /gene="ubiC"
                     /locus_tag="OQQ19_002618"
                     /EC_number="4.1.3.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709881.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HCS1804191.1"
                     /translation="MSHPALTQLRALRYFKEIPALDPQLLDWLLLEDSMTKRFEQQGK
                     TVSVTMIREGFVEQNEIPEELPLLPKESRYWLREILLCADGEPWLAGRTVVPVSTLSG
                     PELALQKLGKTPLGRYLFTSSTLTRDFIEIGRDAGLWGRRSRLRLSGKPLLLTELFLP
                     ASPLY"
     gene            923..1795
                     /gene="ubiA"
                     /locus_tag="OQQ19_002619"
     CDS             923..1795
                     /gene="ubiA"
                     /locus_tag="OQQ19_002619"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HCS1804192.1"
                     /translation="MEWSLTQNKLLAFHRLMRTDKPIGALLLLWPTLWALWVATPGVP
                     QLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVV
                     LVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAA
                     VSESVPLSCWLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDKLIIGIL
                     QIGVLALMAIIGELNGLGWGYYWSILVAGALFVYQQKLIANREREACFKAFMNNNYVG
                     LVLFLGLAMSYWHF"
     gene            complement(1950..4373)
                     /gene="plsB"
                     /locus_tag="OQQ19_002620"
     CDS             complement(1950..4373)
                     /gene="plsB"
                     /locus_tag="OQQ19_002620"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsB"
                     /protein_id="HCS1804193.1"
                     /translation="MSGWPRIYYKLLNLPLSILVKSKSIPADPAPELGLDTSRPIMYV
                     LPYNSKADLLTLRAQCLAHDLPDPLEPLEIDGTLLPRYVFIHGGPRVFTYYTPKEESI
                     KLFHDYLDLHRSNPNLDVQMVPVSVMFGRAPGREKGEVNPPLRMLNGVQKFFAVLWLG
                     RDSFVRFSPSVSLRRMADEHGTDKTIAQKLARVARMHFARQRLAAVGPRLPARQDLFN
                     KLLASRAIAKAVEDEARSKKISHEKAQQNAIALMEEIAANFSYEMIRLTDRILGFTWN
                     RLYQGINVHNAERVRQLAHDGHELVYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGIN
                     LNFWPAGPIFRRLGAFFIRRTFKGNKLYSTVFREYLGELFSRGYSVEYFVEGGRSRTG
                     RLLDPKTGTLSMTIQAMLRGGTRPITLIPIYIGYEHVMEVGTYAKELRGATKEKESLP
                     QMLRGLSKLRNLGQGYVNFGEPMPLMTYLNQHVPDWRESIDPIEAVRPAWLTPTVNNI
                     AADLMVRINNAGAANAMNLCCTALLASRQRSLTREQLTEQLNCYLDLMRNVPYSTDST
                     VPSASASELIDHALQMNKFEVEKDTIGDIIILPREQAVLMTYYRNNIAHMLVLPSLMA
                     AIVTQHRHISRDVLMEHVNVLYPMLKAELFLRWDRDELPDVIDALANEMQRQGLITLQ
                     DDELHINPSHSRTLQLLAAGARETLQRYAITFWLLSANPSINRGTLEKESRTVAQRLS
                     VLHGINAPEFFDKAVFSSLVLTLRDEGYISDSGDAEPAETMKVYQLLAELITSDVRLT
                     IESATQGEG"
     gene            4544..4912
                     /gene="dgkA"
                     /locus_tag="OQQ19_002621"
     CDS             4544..4912
                     /gene="dgkA"
                     /locus_tag="OQQ19_002621"
                     /EC_number="2.7.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HCS1804194.1"
                     /translation="MANNTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVV
                     IACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAV
                     LIAIIVAVITWCILLWSHFG"
     gene            5022..5630
                     /gene="lexA"
                     /locus_tag="OQQ19_002622"
     CDS             5022..5630
                     /gene="lexA"
                     /locus_tag="OQQ19_002622"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000646075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="repressor LexA"
                     /protein_id="HCS1804195.1"
                     /translation="MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAE
                     EHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLLAQQHIEGHYQVDP
                     SLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKK
                     QGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVIRNGDWL"
     gene            5703..7028
                     /gene="dinF"
                     /locus_tag="OQQ19_002623"
     CDS             5703..7028
                     /gene="dinF"
                     /locus_tag="OQQ19_002623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter DinF"
                     /protein_id="HCS1804196.1"
                     /translation="MAFLTSSDKALWHLALPMIFSNITVPLLGLVDTAVIGHLDSPVY
                     LGGVAVGATATSFLFMLLLFLRMSTTGLTAQAYGAKNPQALARALVQPLLLALGAGAL
                     IALLRTPIIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARA
                     PVILLVVGNILNIVLDVWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKILKLRGI
                     SGEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTL
                     LTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSVVYLLAGE
                     HIIALLTSLTQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAA
                     GFALTLLTLPWLGNHALWLALTVFLALRGLSLAAIWRRHWRNGTWFAAT"
     gene            7144..7353
                     /locus_tag="OQQ19_002624"
     CDS             7144..7353
                     /locus_tag="OQQ19_002624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HCS1804197.1"
                     /translation="MNKDEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQ
                     ERYGYQKDQAEKEVVDWETRNEYRW"
     gene            complement(7395..7910)
                     /gene="zur"
                     /locus_tag="OQQ19_002625"
     CDS             complement(7395..7910)
                     /gene="zur"
                     /locus_tag="OQQ19_002625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc uptake transcriptional repressor Zur"
                     /protein_id="HCS1804198.1"
                     /translation="MEKTTTQELLAQAEKICAQRNVRLTPQRLEVLRLMSLQDGAISA
                     YDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVESTNSYVLCHLFDQSTHTSAMFI
                     CDRCGAVKEECAEGVEDIMHTLAAKMGFALRHNVIEAHGLCAACVEVEACRHPEQCQH
                     DHSVQVKKKPR"
     gene            8228..9213
                     /locus_tag="OQQ19_002626"
                     /pseudo
     CDS             8228..9213
                     /locus_tag="OQQ19_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001560258.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2713 domain-containing protein"
     gene            9576..10613
                     /gene="dusA"
                     /locus_tag="OQQ19_002627"
     CDS             9576..10613
                     /gene="dusA"
                     /locus_tag="OQQ19_002627"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HCS1804199.1"
                     /translation="MHGNSEMQKINQTSAMPEKTDVHWSGRFSVAPMLDWTDRHCRYF
                     LRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEA
                     RGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDD
                     QDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDF
                     PHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDAYPV
                     AVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVL
                     EHALKLVADKR"
     gene            10747..10989
                     /gene="pspG"
                     /locus_tag="OQQ19_002628"
     CDS             10747..10989
                     /gene="pspG"
                     /locus_tag="OQQ19_002628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313059.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response protein PspG"
                     /protein_id="HCS1804200.1"
                     /translation="MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALM
                     IKLLPWLLLAIAVVWVIKAIKAPKVPKYQRYDRWRY"
     gene            complement(11154..12137)
                     /locus_tag="OQQ19_002629"
     CDS             complement(11154..12137)
                     /locus_tag="OQQ19_002629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone oxidoreductase"
                     /protein_id="HCS1804201.1"
                     /translation="MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFID
                     TYIRSGLYPPPSLPSGSGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIN
                     ADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQW
                     AKALGAKLIGTVGTAQKAQSALKAGAWQVINYREENLVERLKEITGGKKVRVVYDSVG
                     RDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREEL
                     TEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLIP"
     gene            12220..13635
                     /gene="dnaB"
                     /locus_tag="OQQ19_002630"
     CDS             12220..13635
                     /gene="dnaB"
                     /locus_tag="OQQ19_002630"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HCS1804202.1"
                     /translation="MAGNKPFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLD
                     NERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGG
                     FAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIAEAGFDPQGRTSEDLLDL
                     AESRVFKIAESRANKDEGPKNIADVLDATVARIEQLFQQPHDGVTGVNTGYDDLNKKT
                     AGLQPSDLIIVAARPSMGKTTFAMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASL
                     SRVDQTKIRTGQLDDEDWARISGTMGILLEKRNIYIDDSSGLTPTEVRSRARRIAREH
                     GGIGLIMIDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQR
                     ADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVR
                     LTFNGQWSRFDNYAGPQYDDE"
     gene            13688..14767
                     /gene="alr"
                     /locus_tag="OQQ19_002631"
     CDS             13688..14767
                     /gene="alr"
                     /locus_tag="OQQ19_002631"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HCS1804203.1"
                     /translation="MQAATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLE
                     TARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNE
                     EQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAGAFYHRLTQCKNVRQPVNIVSHF
                     ARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGIILYGVS
                     PLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGD
                     GYPRAAPSGTPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERI
                     AEMTKVSAYELITRLTSRVAMKYVD"
     gene            15020..16213
                     /gene="tyrB"
                     /locus_tag="OQQ19_002632"
     CDS             15020..16213
                     /gene="tyrB"
                     /locus_tag="OQQ19_002632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709866.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transaminase"
                     /protein_id="HCS1804204.1"
                     /translation="MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIP
                     QLKAVAEAEARLNAQPHGASLYLPMEGLNSYRHAIAPLLFGADHPVLQQQRVATIQTL
                     GGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNSVRF
                     NDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGF
                     SAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVLCEDAEAAGRVLGQL
                     KATVRRNYSSPPNLGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEM
                     PERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKA
                     FAAVM"
BASE COUNT         3915 a         3903 c         4336 g         4227 t
ORIGIN      
        1 tgatatgttg aatcctacaa aagataccaa ttggaattct acgtgtatct ataaatccag
       61 acataagatg ttgcctgtta atcttactca ggaaacactt ttcaactcca aatctcagga
      121 taaacatgcg cttttcccca tttttactgc gagttggcga gcttatcgta taatgaataa
      181 gggtgcttaa gtaaaggaaa acatcaccgt tcctggcatc ctgggcggtg atgcccctat
      241 ggttgccctc gccagcgcgg gcatcggcaa agcgtaaggt tcaaaagcga tttaccactt
      301 catgcgattg ttgcgttttt gttgcgcatt agatcactta atttgcttta catctcccgt
      361 aaacactttt ctgcgataca atgcctttac gttatgtaac ggagagttcg gcatgtcaca
      421 ccccgcgtta acgcaactgc gtgcgctgcg ctattttaaa gagatccctg ccctggatcc
      481 gcaactgctc gactggctgt tgctggagga ttccatgaca aaacgttttg aacagcaggg
      541 aaaaacggta agcgtgacga tgatccgcga agggtttgtc gagcagaatg aaatccccga
      601 agaactgccg ctgctgccga aagagtctcg ttactggtta cgtgaaattt tgttatgtgc
      661 cgatggtgaa ccgtggcttg ccggtcgtac cgtcgttcct gtgtcaacgt taagcgggcc
      721 ggagctggcg ttacaaaaat tgggtaaaac gccgttagga cgctatctgt tcacatcatc
      781 gacattaacc cgggacttta ttgagatagg ccgtgatgcc gggctgtggg ggcgacgttc
      841 ccgcctgcga ttaagcggta aaccgctgtt gttaacagaa ctgtttttac cggcgtcacc
      901 gttgtactaa gaggaaaaaa atatggagtg gagtctgacg cagaataagc tgctggcgtt
      961 tcatcgctta atgcgtacgg ataagccaat tggcgcgtta ctgctgctct ggccaacatt
     1021 atgggcgttg tgggtggcga caccgggcgt tcctcagctc tggatcctgg cggtatttgt
     1081 cgcgggtgtc tggctgatgc gcgctgccgg atgtgtggtg aatgattatg ctgaccgaaa
     1141 gtttgatggt catgttaagc gcacggcgaa ccgaccactt cccagcggcg cggtaacaga
     1201 gaaagaggcg cgcgcgctgt ttgtagtgct ggtactgatt tcgtttttac tggtactgac
     1261 gctgaatacg atgaccattc tgttgtcgat tgccgctctg gcgttggcgt gggtgtaccc
     1321 gtttatgaag cggtataccc atctcccgca agtggtgctg ggcgcggcgt ttggctggtc
     1381 gattccaatg gcttttgccg ctgtgagtga gtcggtgcca ttgagttgct ggttaatgtt
     1441 cctcgccaat attctctggg cggtggctta cgacacgcag tatgcgatgg ttgaccgcga
     1501 tgatgatgtg aagattggca ttaaatccac ggcaatcctg ttcggccaat acgataaatt
     1561 gattattggt attttgcaga ttggcgtact ggcactgatg gcgatcatcg gtgagttaaa
     1621 tggcttaggc tggggatatt actggtcaat tctggtggct ggcgcgctgt ttgtttatca
     1681 acaaaaactg attgccaacc gcgagcgtga agcctgcttt aaagcattta tgaataataa
     1741 ctatgttggt ctggtactat ttttagggct ggcaatgagt tactggcatt tctgatgatg
     1801 taaaaaagcc ggatgatcat ccggctttct tctgggttgc ctgatgcgcg gcgcttctca
     1861 ggcctacaca acacatcgca atttattgaa tttgcagatt atggaatgcc ggataaggcg
     1921 ttttcgccgc atccggcaat tctctctggt tacccttcgc cctgcgtcgc actctcaatc
     1981 gtcaaacgca cgtctgatgt aatcaactcc gccagcaact gataaacctt catcgtttct
     2041 gccggttcgg catcgccgct atcgctgata tacccttcat cacgcagcgt cagcaccaga
     2101 gaactgaaca ccgccttgtc gaagaactcc ggcgcgttga taccgtgcag cacggagaga
     2161 cgttgcgcga cggtgcggct ctctttctcc agcgtaccgc ggttgatcga cgggttagcg
     2221 ctcaacagcc agaaggtgat ggcataacgt tgcagcgttt cgcgcgcgcc tgcggccagc
     2281 agctgtagcg tgcgagaatg cgacgggttg atatgcaact catcatcttg cagggtaatc
     2341 agcccctgac gttgcatctc atttgccaac gcatcaataa cgtccggcaa ctcgtcgcga
     2401 tcccagcgca ggaacagctc cgctttcagc attgggtaaa gcacattgac gtgctccatc
     2461 aatacgtcgc gggagatgtg gcgatgctgg gtgacaattg ccgccatcag cgaaggcagc
     2521 accaacatat gcgcaatgtt gttgcgatag taggtcatca gcaccgcttg ctcgcgcggc
     2581 agaatgatga tgtcgccgat agtgtctttc tcaacttcaa acttgttcat ttgcagcgcg
     2641 tgatcgataa gctcgctggc gctggctgaa ggaacggtag agtccgtgga gtaaggtacg
     2701 ttgcgcatca gatccaggta gcagttgagt tgctcggtta actgctcgcg ggtaagtgag
     2761 cgctgacgtg atgccagtag cgcggtacag cagaggttca tggcgtttgc cgcgcctgcg
     2821 ttgttaatgc gtaccatcag atcggcagca atattattga ccgtcggcgt taaccatgcc
     2881 ggacgcaccg cttcgatggg atcgatagat tcacgccagt caggtacatg ctggttaagg
     2941 taggtcatca acggcattgg ttcaccgaag ttgacgtaac cctgaccgag attacgcagc
     3001 ttgcttaaac cgcgcagcat ctgcggcagg ctctctttct ctttcgtcgc accgcgcagt
     3061 tctttggcgt aagtacccac ttccatgacg tgctcataac cgatatagat cggaatcagc
     3121 gtaatcggac gcgtgccgcc acgcagcatc gcctgaatgg tcatcgacag cgtaccggtt
     3181 ttcggatcca gcaaacgccc cgtacgggaa cgaccgcctt ccacgaaata ctcgacggaa
     3241 taaccacggc tgaacagttc gccgagatac tcacggaaaa cggtggaata aagtttattg
     3301 cctttaaacg tacggcgaat aaagaacgcc cccagacggc ggaaaatcgg cccggccggc
     3361 cagaaattca ggttgatccc ggcggcgata tgcggcggca ccagcccctg gtggtacagc
     3421 acgtaagaaa gtagcaggta gtccatgtga ctgcggtggc aaggcacata caccagctca
     3481 tgaccgtcgt gggccagctg gcgaacgcgc tcggcgttat ggacgttgat gccctgataa
     3541 agtcggttcc aggtgaagcc cagaatgcgg tcagtcaggc ggatcatctc gtaagagaaa
     3601 ttcgccgcaa tctcttccat cagcgcaatc gcgttctgct gcgctttttc atgggagatt
     3661 tttttgctgc gcgcttcatc ttctaccgct ttggcaatgg cgcgggaggc gagcagctta
     3721 ttaaacagat cctgacgagc aggcagacgt gggcccacag cagccagacg ttgacgggca
     3781 aagtgcatac gcgccacgcg cgccagtttc tgtgcgatag ttttatccgt gccgtgttca
     3841 tccgccatac ggcgcagcga aactgacggc gagaaacgca caaaactgtc gcgaccgagc
     3901 cacagtacgg cgaaaaattt ctgtacgccg ttaagcatac gcagcggcgg gtttacttcg
     3961 cctttttcac gccccggcgc gcgaccaaac atcaccgata ctggcaccat ctgcacatcc
     4021 agatttgggt tgctacggtg caaatcgaga tagtcgtgga acagcttaat agactcttct
     4081 ttcggcgtgt aataggtgaa tacacgcggc ccgccgtgaa tgaacacata gcgcggcagt
     4141 agcgtgccgt cgatttccag cggctctaac gggtcaggca agtcatgagc cagacactgg
     4201 gcgcgtaacg tcagcaaatc tgctttcgag ttgtacggta aaacgtacat aattggacga
     4261 gaggtatcca gccccagttc cggggcagga tctgccggaa tagacttgct ttttaccagg
     4321 atgcttaatg gtaaattcag taatttgtag taaattcgtg gccagccgga cataaacgat
     4381 gtaaagcctc tggttaataa tgcaaatgcg cggcaaggat agcagaaagt catgggaaat
     4441 tctgtggtat ccgctcatgt ttcgcgcggc gttacgcaaa cccgaatcat cggatttaac
     4501 ggtacactga tattgacgct cataatgtaa aaaggttctt tcaatggcca ataataccac
     4561 tggattcacc cgaattatca aagctgctgg ctattcctgg aaaggtttac gcgctgcatg
     4621 gatcaacgaa gcggcattcc gtcaggaagg cgtagcggta ttgttggcgg tggtcatcgc
     4681 ctgctggctg gatgtggacg caattacccg cgtgctgctt atcagctccg tgatgctggt
     4741 gatgattgtg gaaatcctca atagcgccat cgaagcagtg gttgaccgaa ttggctctga
     4801 ataccatgag ctttccggac gcgcaaaaga tatgggatcc gccgcggtgc tgattgcgat
     4861 tatcgtcgcc gtgataacct ggtgcatcct gttatggtcg cattttggat aacccttcca
     4921 gaattcgata aatctctggt ttattgtgca gtttatggtt ccaaaatcgc cttttgctgt
     4981 atatactcac agtataactg tatatacacc cagggggcgg aatgaaagcg ttaacggcca
     5041 ggcaacaaga ggtgtttgat ctcatccgtg atcacatcag ccagacaggt atgccgccga
     5101 cgcgtgcgga aatcgcgcag cgtttggggt tccgttcccc aaacgcggct gaagaacatc
     5161 tgaaggcgct ggcacgcaaa ggagttattg aaattgtttc cggcgcatca cgcgggattc
     5221 gtctgttgca ggaagaggaa gaagggttgc cgctggtagg tcgtgtggct gccggtgaac
     5281 cgcttctggc gcagcagcat attgaaggtc attatcaggt cgatccttcc ttattcaagc
     5341 cgaatgctga tttcctgctg cgcgtcagcg ggatgtcgat gaaagatatt ggcattatgg
     5401 atggcgactt gctggcagtg cataaaactc aggatgtacg taacggtcag gtcgttgtcg
     5461 cacgtattga tgacgaagtt accgttaagc gcctgaaaaa acagggcaat aaagtcgaac
     5521 tgttgccaga aaatagcgag tttaaaccaa ttgtcgttga ccttcgtcag cagagcttca
     5581 ccattgaagg gctggcggtt ggagttattc gcaacggcga ctggctgtaa catatctctg
     5641 agaccgcgat gccgccaggc gtcgcggttt gtttttcatc tctcttcatc aggcttgtct
     5701 gcatggcatt cctcacttca tctgataaag cactctggca tctcgcctta cccatgattt
     5761 tctccaatat caccgttccg ttgctgggac tggtcgatac ggcggtaatt ggtcatcttg
     5821 atagtccagt ttatttgggc ggcgtggcgg ttggtgcaac ggcgaccagc tttctcttta
     5881 tgctgttgct gtttttacgc atgagcacca ccgggctgac tgcgcaggct tatggtgcca
     5941 aaaatcctca ggcattagcc cgtgcgctgg tgcaaccgtt gctgttggcg ttgggggcag
     6001 gggcgttaat tgcgctgctg cgtacaccga ttatcgatct ggcactgcat attgttggcg
     6061 gtagtgaagc agtcctggaa caggcgcggc gctttcttga aatccgctgg ttaagcgcac
     6121 cggcgtcact ggcgaatctg gtattacttg gttggttact cggcgtgcaa tatgcccgtg
     6181 cgccagtaat tttgttagtg gtcggcaata tcctcaacat tgtgctggat gtctggctgg
     6241 tgatggggct gcatatgaac gtgcagggcg cggcgctggc gacggttatt gcggaatatg
     6301 caacattgct gattggtctg ctaatggtgc gtaaaatcct caaactacgc ggaatttccg
     6361 gcgaaatgct gaaaactgcc tggcgaggaa acttccgtcg cttgctggcg cttaaccgcg
     6421 atatcatgct gcgttcgctg ttgttgcaac tctgtttcgg cgcgatcacc gtacttggtg
     6481 cgcgactggg gagtgacatt atcgctgtta acgcggttct gatgacgcta ctcaccttta
     6541 ccgcctatgc gctggatggt tttgcctacg cggttgaagc gcattccggt caggcgtacg
     6601 gtgcgcgcga cggtagccag ttgctggatg tctggcgggc agcgtgccgc cagtcgggga
     6661 tcgtagcgtt actgttttcg gtagtttatt tgctggcagg ggaacacatc attgcgttgc
     6721 tgacgtcgtt aacccagatt cagcagctgg ccgaccgcta tcttatctgg caggtgattt
     6781 tgccgttggt tggcgtctgg tgttatctgc tggacggcat gtttataggc gcaacgcgcg
     6841 cagccgaaat gcgtaacagt atggcggtgg ccgccgcagg ttttgcgctg acgctcctta
     6901 cgctgccgtg gctgggtaat catgctttgt ggctggcgtt aaccgtcttt ctggcgttgc
     6961 gcgggctttc tctggcggct atctggcggc gtcactggcg caacggtacc tggtttgccg
     7021 caacgtgacg gttaaaaatt ctgaataaat aatcctaagc caaattgctg actacactta
     7081 atctcacgtt cagaagaaaa gtgaacgtac tctcattcac aacctaacga tgaggtcttg
     7141 attatgaata aagatgaagc cggcggtaac tggaaacagt ttaaaggtaa agtgaaagag
     7201 caatggggca aactgaccga tgatgatatg acgatcattg aaggtaaacg tgatcaactg
     7261 gtcggtaaaa tccaggaacg ttatggttat cagaaagatc aggcagaaaa agaggtcgtg
     7321 gattgggaaa cccgcaatga atatcgctgg taattaatcc ctcctgcccg acgtgtacaa
     7381 ggatgtacgc cctcttaacg cggtttcttt ttcacctgca cagagtgatc atgctggcac
     7441 tgttcaggat gacgacacgc ttccacttcc acgcatgccg cacagagccc atgtgcttca
     7501 atcacattat gccgcagggc aaaccccatt tttgccgcca gcgtatgcat gatgtcttcc
     7561 acgccttctg cacactcttc tttcactgcg ccgcagcgat cgcaaataaa catagctgaa
     7621 gtatgggtgg actggtcgaa cagatgacag agcacataac tgttggtgga ttccacctta
     7681 tgcacaaaac cttgctcaag cagaaaatcc agcgcgcgat aaaccgttgg cggcttggct
     7741 tgcggttcag cttcgcgcag taaatcaagc agatcataag cgctgatagc gccatcctgc
     7801 agactcatca ggcgcaacac ttccaggcgc tgtggggtca ggcgcacatt acgctgcgcg
     7861 cagatttttt cagcctgcgc taataactcc tgcgttgtgg tcttttccat cgggcacctc
     7921 aaagtggggg ttaagaatgt ccttacttta ccatgttcca ggaaaaacac cgagaaccct
     7981 tattgttgcc gtaatgttga ttttctgttt tgtaggtaag gtgttatgtt gccttgtcgt
     8041 accattatca acacgataat aattaataat tcatttttaa ataaattgct tcaagttaac
     8101 tcgctattta tttaactggg tttaaacgca tacctgtagt tcagaaatta tgagcgattt
     8161 ttgatagtga ccagatggca aaagaattat aaggaggaca cggtacgaca aaaaaggtag
     8221 atgaatcatg ttgaagataa tacccggtgc aactggatac tttaataaaa cactcaattc
     8281 aaatcaattc gataatgaag atgcaatcaa agataaatta gataatagag gttcaatcaa
     8341 aggtaaatta aataatatat atggtaaatc tattgattat gcagcgctgc gtcatcggga
     8401 tataattatt gcaaaaatag atttgtttat tcaacgaatc acgcataatt tatggcatgc
     8461 acgtaaaaaa atgtgttttt aattgagcaa ataaatgatc tcaaaatgtg ggtcaataag
     8521 tatattgacg attgcactga tgaggattta aacgatcgtg actttattgc atcagttgtt
     8581 gaccgggcta tttttcattt cgcgattaat agtatatgta atcctgggga taataaagat
     8641 gcgactccca ttgaacaatg tacttttgat gtagaaacta agaatggcct tccctccacg
     8701 gttcagctat tttatgagga atctaaggat aatgaacctt tagcgaatat acattttcaa
     8761 acaataggtt ctggtttttt aacgtttgtt aatgcctgcc aggaacatga tgacaacagc
     8821 ttaaaattat ttgcttcgct gttaatttca ctttcatatt ctagtgccta cgcagattta
     8881 tcagaaacag tgtatattaa tgaaaataat gagagctacc tgaaagctca gtttgaaaaa
     8941 ttatctcaac gtgatatgaa gaagtacctg ggagagatga agcgtctggc tgatggggga
     9001 gaaatgaatt ttgatggcta tctggataag atgtcacatc tggtgaatga agggacgctc
     9061 gatcctgata ttttaagcaa aatgcgagat gctgcaccac aattaattag cttcgcgaag
     9121 tcgtttgacc caacctcaaa ggaagagatt aaaatactta cagacacttc taaattaatt
     9181 tatgatttgt tcggggttaa atcggagaaa taatatgtga agttcttcga tagtatggaa
     9241 ggcattatat aaaaggaccc aatatttatt gggtcctttt ttctctatca atgctattag
     9301 cagggagata tatcaccaaa gtttaatgtg tgatttttta tttatcgtcg aacctggatt
     9361 gtttatcatt ggccttaaca aagttaacgg ctaataagat tatttccatc acttcgtgag
     9421 agcttcatgc cttgagagga tctcaatttt cttttgcaat gagacaggcg cttcctgttg
     9481 ttatggtata gtaccccgct attgagcctc ctgaatagtg atgctgaata acataacccc
     9541 atgatatatc gataaaataa tctctacatt tgaaaatgca cggtaattct gaaatgcaaa
     9601 aaatcaacca aaccagcgca atgcctgaaa aaactgacgt tcactggagt ggtcggttta
     9661 gcgttgcacc aatgctcgac tggacggaca gacattgccg ctatttcttg cgtctgcttt
     9721 cccgcaatac gttgctgtat accgaaatgg tgaccacagg ggcgattatt cacggtaaag
     9781 gtgattacct ggcgtacagt gaagaagaac atccggtagc gttgcaactc ggcggtagcg
     9841 atccggcggc gctggcacag tgtgcgaagc tggcagaagc gcgtggatat gatgagatca
     9901 acctgaatgt cggctgcccg tctgaccggg tgcagaacgg catgtttggt gcgtgtctga
     9961 tgggtaatgc gcagctggtt gccgattgcg tgaaagcgat gcgcgatgtg gtgtcgattc
    10021 cggtgacggt gaaaacgcgt attggcatcg atgaccagga cagctatgaa tttctctgcg
    10081 atttcatcaa caccgtttcc ggcaaaggcg agtgtgggat gttcatcatc catgcacgta
    10141 aagcctggct ttcggggtta agcccgaaag aaaaccgtga aatcccgccg ctcgattatc
    10201 cgcgtgtgta tcaactgaag cgtgactttc cgcatctgac aatgtcgatt aacggtggta
    10261 tcaagtcgct ggaagaggcc aaagcacacc tgcaacatat ggatggcgtg atggtcgggc
    10321 gcgaggcgta tcagaatccg ggtattctgg cggcggtaga ccgggagatc tttggttcct
    10381 cggataccga tgcctatccg gtggcggtag tgcgcgccat gtatccgtac attgagcgtg
    10441 aactcagcca ggggacgtat ctcggccata ttacccggca tatgttgggc ttgttccagg
    10501 gtattcctgg cgcgcggcag tggcggcgtt atttaagtga aaatgcccat aaagcgggtg
    10561 cagacattaa tgtgctggaa cacgcgctca aactggtggc ggataagcgt taacttttca
    10621 ccaaaaagta gtcaaattca ccacgccctg cgcaccgtcg cggggcgttt tgctgttaaa
    10681 tcaatagatt atttttggca tgattcttgt aatgccagca agagatttca tatttgggag
    10741 agcatcatgc tggaactact ttttgtgatt ggcttttttg tcatgctgat ggtcaccggc
    10801 gtttcgttgc tgggcattat cgccgcgctg gttgtggcga cggccattat gttcctcggc
    10861 ggtatgctgg cattgatgat taagttgctg ccgtggttac tactggcgat tgcggtggtg
    10921 tgggttatta aggcgattaa agcaccaaaa gtgcctaaat atcagcgtta tgaccgctgg
    10981 cgttactaag ggattgtgcg gatgatcaca acctaaggtt ttatccttag aacaaaatag
    11041 gaattgataa tcaaatctgt cactattgcg cctctaacag attcatcgtg ctgtacccta
    11101 catacagccg actataaaaa gaaagggctt cccaggtgga agccctattt cttttatgga
    11161 atcagcaggc tggaaccttg cgtcgcccgg ctttccagaa tctcatgcgc acgctgcgca
    11221 tccttcagcg gatatttctg ctgctcggcg acatcgacct taatcacacc gctggcaatc
    11281 aaagagaaca gttcattact ggcctcggtt aattcctccc gtgtggtgat atagccttgc
    11341 agggaagggc gtgtcacata caacgagcct ttttgattga gaatgcctaa gttcacaccg
    11401 gtaaccgcac ctgatgagtt gccaaaactg accattaagc cgcggcgttg caggcaatcc
    11461 agcgaccgtt cccaggtgtc tctgcccacg gaatcgtaca ctacgcgcac tttcttaccg
    11521 ccggtgatct ctttcaatcg ctcgaccaga ttctcttcac gatagttaat aacctgccac
    11581 gcgccggctt ttagcgcgct ctgcgctttt tgcgcggttc ctacggtgcc gataagtttc
    11641 gcgcccagag cttttgccca ctggcaggca atcaagccaa cgccgccagc cgctgcgtgg
    11701 aacaggaact gttcatcggg tttaatttca taggttttgc gcagcagata ataaaccgtt
    11761 aagcctttca ggaaagatgc tgcagcttgc tcaaaagaaa tagccgcagg cagaatcgcc
    11821 gctttatccg cattaatgtt atgcacagag ctgtaagcgc ctaacgccga ctgcgcatag
    11881 actacacgat cgcctgcctt aatatgcttt acaccactgc cgactttact cacgatgcct
    11941 gccgcttcgg tacctgatcc gctgggtagt gatggcggcg ggtaaaggcc gctgcggata
    12001 tacgtgtcga taaaattgat gccgatggct ttattttcga cctggatttc attctctgcc
    12061 ggatcggcag gagtgaactc tacggcttga agtacttccg ggccaccgtg cttgtgaaat
    12121 tcaattcgtg ttgccatgtg tcctccagaa cgtatcgtca gggtctgctt catatggtaa
    12181 agtttcgacc cattctttat ctcggtaact ccattcacta tggcaggaaa taaacccttc
    12241 aacaaacagc aggctgaacc ccgcgaacgc gatccacaag ttgccgggct gaaagtgcct
    12301 ccgcactcga tcgaagcgga gcagtcggtg ttgggcggtt taatgctgga taacgaacgc
    12361 tgggacgatg tagccgagcg tgtggtggca gacgattttt acacccgccc acaccgccat
    12421 atctttactg aaatggcgcg tttgcaggaa agcggtagtc ctatcgatct gattaccctt
    12481 gcggaatcgc tggaacgcca ggggcaactc gatagcgtcg gtggttttgc ttatctggca
    12541 gagctgtcaa aaaatacgcc aagtgcggcg aacatcagtg cttatgctga catcgtgcgt
    12601 gaacgtgccg ttgtccgtga gatgatctcg gttgcgaatg agattgctga agccggtttt
    12661 gatccgcagg ggcgtaccag cgaagatctg ctggaccttg ctgaatcgcg cgtctttaaa
    12721 attgccgaaa gtcgtgcaaa caaagacgaa gggccgaaga acatcgccga tgtgctcgac
    12781 gcaaccgtgg cgcgtattga gcagttgttt cagcagccac acgatggcgt taccggagta
    12841 aacaccggtt atgacgatct caacaaaaaa accgctggct tgcagccgtc ggatttgatc
    12901 atcgtcgccg cgcgtccgtc gatgggtaaa acaacatttg cgatgaacct cgtcgaaaac
    12961 gcggcgatgt tgcaggataa accagtactt atcttctcgc tggagatgcc ttcagaacag
    13021 attatgatgc gttctctggc gtcgctgtcg cgcgttgacc agactaaaat ccgtaccggg
    13081 cagctcgatg atgaagactg ggcgcgcatt tccggcacca tgggtatttt gctcgaaaaa
    13141 cgcaatatct atatcgatga ctcctccggc ctgacgccaa cggaagtgcg ttcccgcgca
    13201 cgccgtattg cccgtgaaca cggcggcatc gggcttatca tgatcgacta cctgcaactg
    13261 atgcgcgtac cggcgctttc cgataaccgt acgctggaaa ttgcagaaat ctctcgctcg
    13321 ctgaaagcac tggcgaaaga actgaacgtg ccggtggtgg cgctgtccca gttgaaccgt
    13381 tctctggaac aacgtgccga caaacgcccg gtcaactccg acctgcgtga atctggctct
    13441 atcgagcagg atgcggactt gatcatgttt atctatcgtg atgaggtgta tcacgaaaac
    13501 agtgatttaa aaggcatcgc ggaaattatt atcggtaaac aacgtaacgg cccaatcggg
    13561 acggtacgcc tgacctttaa cggtcaatgg tcgcgcttcg acaactatgc ggggccgcag
    13621 tacgacgacg aataataatt attttatgaa ttaggcaatt aaagcaaaca cttatcaagg
    13681 aacacaaatg caagcggcaa ctgttgtgat taaccgccgc gctctgcgac acaacctgca
    13741 acgtcttcgt gaactggccc ctgccagtaa aatggttgcg gtggtgaaag cgaacgctta
    13801 tggtcacggt cttcttgaga ccgcgcgaac gctccccgat gctgacgcct ttggcgtagc
    13861 ccgtctcgaa gaagctctgc gactgcgtgc ggggggaatc accaaacctg tactgttact
    13921 cgaaggcttt tttgatgcca gagatctgcc gacgatttct gcgcaacatt ttcataccgc
    13981 cgtgcataac gaagaacagc tggctgcgct ggaagaggct agcctggacg agccggttac
    14041 cgtctggatg aaactcgata ccggtatgca ccgtctgggc gtaaggccgg aacaggctgg
    14101 ggcgttttat catcgcctga cacagtgcaa aaacgttcgt cagccggtga atatcgtcag
    14161 ccattttgcg cgcgcggatg aaccaaaatg tggcgcaacc gagaaacaac tcgctatctt
    14221 taataccttt tgcgaaggca aacctggtca acgttccatt gccgcgtcgg gtggcattct
    14281 gctgtggcca caatcgcatt ttgactgggt gcgcccgggc atcattcttt atggcgtctc
    14341 gccgctggaa gatcgctcca ccggtgccga ttttggctgt cagccagtga tgtcactaac
    14401 ctccagcctg attgccgtgc gtgagcataa agccggagag cctgttggtt atggtggaac
    14461 ctgggtaagc gaacgtgata cccgtcttgg cgtagtcgcg atgggctatg gcgatggtta
    14521 tccgcgcgcc gctccatccg gtacgccagt gctggtgaac ggtcgcgaag taccgattgt
    14581 cgggcgcgtg gcgatggata tgatctgcgt agacttaggt ccacaggcgc aggacaaagc
    14641 cggggatccg gtcattttat ggggcgaagg tttgcccgta gaacgtatcg ctgaaatgac
    14701 aaaagtgagc gcttacgaac ttattacgcg cctgacttca agggtcgcga tgaaatacgt
    14761 ggattaatcg ttctgtaata tttgattgtc tgtgccggat gcggcgtgaa tgccttatcc
    14821 ggccaataaa atcctaaaaa ttcaataagt tgatgttctt tcatgctctt ataaaggtcg
    14881 tgcctctggc ggatgttcgt ttgtcatgag tctcactctg ttgctaattg ccgttcgctc
    14941 ctgaacatcc actcgatctt cgccttcttc cggtttattg tgttttaacc acctgcccgt
    15001 aaacctggag aaccatcgcg tgtttcaaaa agttgacgcc tacgctggcg acccgattct
    15061 tacgcttatg gagcgtttta aagaagaccc tcgcagcgac aaagtgaatt taagtatcgg
    15121 tctgtactac aacgaagacg gaattattcc acaactgaaa gccgtggcgg aggcggaagc
    15181 gcgcctgaat gcgcagcccc atggcgcttc gctttattta ccgatggaag ggcttaacag
    15241 ctatcgccat gccattgcgc cgctgctgtt tggtgcggac catccggtac tgcaacaaca
    15301 gcgcgtagca accattcaaa cccttggcgg ctcaggggca ttgaaagtgg gcgcggattt
    15361 cctgaaacgc tacttcccgg aatcaggcgt ctgggtcagc gatcctacct gggaaaacca
    15421 cgtagcaata ttcgccgggg ctggattcga agtgagtact tacccctggt atgacgaagc
    15481 gactaacagc gtgcgcttta atgacctgtt ggcgacgctg aaaacattac ctgcccgcag
    15541 tattgtgttg ctgcatccat gttgccacaa cccaacaggt gccgatctca ctaatgatca
    15601 gtgggatgcg gtgattgaaa ttctcaaagc ccgcgagctt atcccattcc tcgatattgc
    15661 ctatcaagga tttagtgccg gtatggaaga ggatgcctac gctattcgcg ccattgccag
    15721 cgctggatta cccgctctgg tgagcaattc gttctcgaaa attttctccc tttacggcga
    15781 gcgcgtcggc ggactttctg ttctgtgtga agatgccgaa gccgctggcc gcgtactggg
    15841 gcaattgaaa gcaacagttc gccgcaacta ctccagcccg ccgaatttgg gtgcgcaggt
    15901 ggtggctgca gtgctgaatg acgaggcatt gaaagccagc tggctggcgg aagtagaaga
    15961 gatgcgtact cgcattctgg caatgcgtca ggaattggtg aaggtattaa gcacagagat
    16021 gccagaacgc aatttcgatt atctgcttaa tcagcgcggc atgttcagtt ataccggttt
    16081 aagtgccgct caggttgacc gactacgtga agaatttggt gtctatctca tcgccagcgg
    16141 tcgcatgtgt gtcgccgggt taaatacggc aaatgtacaa cgtgtggcaa aggcgtttgc
    16201 tgcggtgatg taatgcagga aagcaggctg gagttaccca gcctgcagtg aaattaaact
    16261 gtcgtcgctt tcactatttc tttgtagatg atttttttga tgccgttgtt ctacgtgaga
    16321 gataataaaa cgttgtcagt tcttttattg ttaagtttat cccaattaac tggaattcct
    16381 t
//
LOCUS       DAJVSY010000093        16121 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.093, whole genome shotgun sequence.
ACCESSION   DAJVSY010000093 DAJVSY010000000
VERSION     DAJVSY010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16121)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16121)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16121
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.093"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..321)
                     /locus_tag="OQQ19_002633"
     CDS             complement(<1..321)
                     /locus_tag="OQQ19_002633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707676.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbL family protein"
                     /protein_id="HCS1804205.1"
                     /translation="MMKKTLLLCAFLVGLVSSNVMALTLDEARTQGRVGETFYGYLVA
                     LKTDAETEKLVTDINAERKASYQQLAKQNNVSVDDIAKLAGQKLVARAKPGEYVQGIN
                     GKWVR"
     gene            complement(326..511)
                     /locus_tag="OQQ19_002634"
     CDS             complement(326..511)
                     /locus_tag="OQQ19_002634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnbE family lipoprotein"
                     /protein_id="HCS1804206.1"
                     /translation="MKILLAALTSSFMLAACTPRIEVAAPKEPITINMNVKIEHEIII
                     KADKDVEELLETRSDLY"
     gene            complement(508..3147)
                     /locus_tag="OQQ19_002635"
     CDS             complement(508..3147)
                     /locus_tag="OQQ19_002635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbH family protein"
                     /protein_id="HCS1804207.1"
                     /translation="MLGKYKAVLALLLLIILVPLTLLMTLGLWVPTLAGIWLPLGTRI
                     ALDESPRITRKGLIIPDLRYLVGDCQLAHITNASLSHPSRWLLNVGTVELDSACLAKL
                     PQTEQSPAAPKTLAQWQSMLPNTWINIDKLIFSPWQEWQGKLSLALTSDIQQLRYQGE
                     KVKFQGQLKGQQLTVSELDVIAFEYQPPVKLVGEFTMPLVPDGLPVSGHATATLNLPQ
                     EPSLVDAELDWQENSGQLIVLARDNGDPLLDLPWQITRQQLTVSDGRWSWPYAGFPLS
                     GRLGVKVDNWQAGLENALISGRLSVLTQGQAGKGNAVLNFGPGKLSMDNSQLPLQLTG
                     EAKQADLILYARLPAQLSGSLTDPTLAFEPGALLRSKGRVIDSLDIDEIRWPLAGVKV
                     TQRGVDGRLQAILQAHENELGDFVLHMDGLANDFLPDAGRWQWRYWGKGSFTPMNATW
                     DVAGKGEWHDSTITLTDLSTGFDQLQYGTMTVEKPRLILDKPVVWVRDAQHPSFSGAL
                     SLDAGQTLFTGGSVLPPSTLKFSVDGRDPTYFLFKGDLHAGEIGPVRVNGRWDGIRLR
                     GNAWWPKQSLTVFQPLVPPDWKMNLRDGELYAQVAFSAAPEQGFRAGGHGVLKGGSAW
                     MPDNQVNGVDFVLPFRFADGAWHLGTRGPVTLRIAEVINLVTAKNITADLQGRYPWTE
                     EEPLLLTDVSVDVLGGNVLMKQLRMPQHDPALLRLNNLSSSELVSAVNPKQFAMSGAF
                     SGALPLWLNNEKWIVKDGWLANSGPMTLRLDKDTADAVVKDNMTAGSAINWLRYMEIS
                     RSSTNINLDNLGLLTMQANITGTSRVDGKSGTVNLNYHHEENIFTLWRSLRFGDNLQA
                     WLEQNARLPGNDCPQGKECEEKQ"
     gene            3355..4344
                     /gene="ldhA"
                     /locus_tag="OQQ19_002636"
     CDS             3355..4344
                     /gene="ldhA"
                     /locus_tag="OQQ19_002636"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HCS1804208.1"
                     /translation="MKLAVYSTKQYDKKYLQQVNESFGFELEFFDFLLTEKTAKTANG
                     CEAVCIFVNDDGSRPVLEELKKHGVKYIALRCAGFNNVDLDAAKELGLKVVRVPAYDP
                     EAVAEHAIGMMMTLNRRIHRAYQRTRDANFSLEGLTGFTMYGKTAGVIGTGKIGVAML
                     RILKGFGMRLLAFDPYPSAAALELGVEYVDLPTLFSESDVISLHCPLTPANYHLLNEA
                     AFDQMKNGVMIVNTSRGALIDSQAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVI
                     QDDVFRRLSACHNVLFTGHQAFLTAEALTSISQTTLQNLSNLEKGETCPNELV"
     gene            4455..4877
                     /gene="hslJ"
                     /locus_tag="OQQ19_002637"
     CDS             4455..4877
                     /gene="hslJ"
                     /locus_tag="OQQ19_002637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock protein HslJ"
                     /protein_id="HCS1804209.1"
                     /translation="MKKVAAFVALSLLMAGCVSNDKIAVTPEQLQHHRFVLESVNGKP
                     VTSDKNPPEISFGEKMMISGSMCNRFSGEGKLSNGELTAKGLAMTRMMCANPQLNELD
                     NTISEMLKEGAQVDLTANQLTLATAKQTLTYKLADLMN"
     gene            complement(4874..5140)
                     /locus_tag="OQQ19_002638"
     CDS             complement(4874..5140)
                     /locus_tag="OQQ19_002638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015964583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing protein"
                     /protein_id="HCS1804210.1"
                     /translation="MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEA
                     NCAMIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY"
     gene            5414..8938
                     /gene="nifJ"
                     /locus_tag="OQQ19_002639"
     CDS             5414..8938
                     /gene="nifJ"
                     /locus_tag="OQQ19_002639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HCS1804211.1"
                     /translation="MITIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGL
                     KNVWGDTPRVVEMQSEAGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTP
                     FVLHVAARTVATHALSIFGDHSDVMAVRQTGCAMLCAANVQEAQDFALISHIATLKSR
                     VPFIHFFDGFRTSHEINKIVPLADDTILDLMPQAEIDAHRARALNPEHPVIRGTSANP
                     DSYFQSREATNPWYNAVYDHVEQAMNDFSAATGRQYQPFEYYGHPQAERVIILMGSAI
                     GTCEEVVDELLTRGEKVGVLKVRLYRPFSAKHLLQTLPGSVRSVAVLDRTKEPGAQAE
                     PLYLDVMTALAEAFNNGKRETLPRVIGGRYGLSSKEFGPDCVLAVFAELNAAKPKARF
                     TVGIYDDVTNLSLPLPENTQPNSAKLEALFYGLGSDGSVSATKNNIKIIGNSTPWYAQ
                     GYFVYDSKKAGGLTVSHLRVSEQPIRSAYLISQADFVGCHQLQFIDKYQMAERLKPGG
                     IFLLNTPYSADEVWSRLPQEVQAVLNQKKARFYVINAAKIARECGLAARINTVMQMAF
                     FHLTQILPGDSALAELQGAIAKSYSSKGQDLVEGNWQALALARESVEEVPLQPVNPHS
                     ANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALPPDGTWPMGTTRWEKRNIAEEIP
                     IWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQV
                     APEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEEKINYDFFLNLPEIDRSKL
                     ERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRMLIANATGCSSIYGGNLP
                     STPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRLLDQFADKIPAELLT
                     ALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLIGGDGWAYDIGFG
                     GLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRKARKDLGVSMM
                     MYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLALSHDQMRQL
                     TATGFWPLYRFDPRRADEGKLPLALDSRPPSEALEETLLHEQRFRRLNSQQPEVAEQL
                     WKDAAADLQKRYDFLAQMAGKAEKSNTD"
     gene            9304..10437
                     /gene="ompN"
                     /locus_tag="OQQ19_002640"
     CDS             9304..10437
                     /gene="ompN"
                     /locus_tag="OQQ19_002640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpN"
                     /protein_id="HCS1804212.1"
                     /translation="MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYF
                     SDNSAKDGDQSYARLGFKGETQINDQLTGYGQWEYNIQANNTESSKNQSWTRLAFAGL
                     KFADYGSFDYGRNYGVMYDIEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFF
                     GLVNGLNFAVQYQGNNEGASNGQEGTNNGRDVRHENGDGWGFSTTYDLGMGFSAGAAY
                     TSSDRTNDQVNHTAAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVAN
                     KTQNFEVTAQYQFDFGLRPAVSFLMSKGRDLHAAGGADNPAGVDDKDLVKYADVGATY
                     YFNKNMSTYVDYKINLLDEDDSFYAANGISTDDIVALGLVYQF"
     gene            10578..11012
                     /gene="uspF"
                     /locus_tag="OQQ19_002641"
     CDS             10578..11012
                     /gene="uspF"
                     /locus_tag="OQQ19_002641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310024.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspF"
                     /protein_id="HCS1804213.1"
                     /translation="MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSL
                     PYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILEL
                     AKKIPAHMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR"
     gene            11569..12483
                     /gene="sitA"
                     /locus_tag="OQQ19_002642"
     CDS             11569..12483
                     /gene="sitA"
                     /locus_tag="OQQ19_002642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000949004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter substrate-binding
                     protein SitA"
                     /protein_id="HCS1804214.1"
                     /translation="MHSIKKVTMLLGCLALTCSIAFQASATEKFKVITTFTIIADMAK
                     NVAGDAAEVSSITKPGAEIHEYQPTPGDIKRAQGAQLILANGMNLELWFQRFYQHLNG
                     VPEVIVSSGVTPVGITEGPYEGKPNPHAWMSPDNALIYVDNIRDALIKYDPANAQTYQ
                     RNADTYKAKITQTLAPLRKQITELPENQRWMVTSEGAFSYLARDLGLKELYLWPINAD
                     QQGTPQQVRKVVDIVKKNHIPAVFSESTISDKPARQVARETGAHYGGVLYVDSLSTEN
                     GPVPTYIDLLKVTTSTLVQGIKAGKREK"
     gene            12483..13310
                     /gene="sitB"
                     /locus_tag="OQQ19_002643"
     CDS             12483..13310
                     /gene="sitB"
                     /locus_tag="OQQ19_002643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter ATP-binding
                     protein SitB"
                     /protein_id="HCS1804215.1"
                     /translation="MMQSAGIVVNDVTVTWRNGHTALRDASFTVPSGSIAALVGVNGS
                     GKSTLFKAIMGFVRLTSGKISVLGIPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVM
                     MGRYGYMGMLRIAKKRDRQIVTDALERVDMVDFRHRQIGELSGGQKKRVFLARAIAQQ
                     GDVILLDEPFTGVDVKTEAKIISLLRELRAEGKTMLVSTHNLGSVTTFCDYTVMVKGT
                     VLASGPTDTTFTAENLELAFSGVLRHVTLNGSEESIITDDERPFVAHRPSAVQREAR"
     gene            13307..14164
                     /gene="sitC"
                     /locus_tag="OQQ19_002644"
     CDS             13307..14164
                     /gene="sitC"
                     /locus_tag="OQQ19_002644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter permease subunit
                     SitC"
                     /protein_id="HCS1804216.1"
                     /translation="MNVLLEPFSYEYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGD
                     ALSHSIVPGVAGAYMLGLPFSLGAFFSGGLAAGSMLFLNQRTRLKEDAIIGLIFSSFF
                     GLGLFMVSLNPTSVNIQTIVLGNILAIDPADILQLTIIGILSIIVLFFKWKDLMVTFF
                     DENHARAIGLHPGRLKILFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFP
                     RLLIIAVTIGSVTSFLGAWVSYFLDGATGGIIVVAQTLLFLLAFVFAPTHGLLANRRR
                     AHKALEDRS"
     gene            14161..15018
                     /gene="sitD"
                     /locus_tag="OQQ19_002645"
     CDS             14161..15018
                     /gene="sitD"
                     /locus_tag="OQQ19_002645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter permease subunit
                     SitD"
                     /protein_id="HCS1804217.1"
                     /translation="MMALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKGWALMG
                     DAMSHAVFPGIVLTWILGLPLATGAFVAGVFCAVATGYLKDNSRIKQDTVMGIVFSGM
                     FAAGLILYIAIKPDVHLDHILFGDMLGITIGDIIQTVIIAGLVTLVISVKWRDFLLFS
                     FDYQQAQVSGLHTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRF
                     HIALLLATGISVIVSMTGVWLSFFIDSAPAPTIVVLFAVVFIMTFTVTSINARTKGNA
                     HTQDLLSPN"
     gene            complement(15346..>16121)
                     /locus_tag="OQQ19_002646"
     CDS             complement(15346..>16121)
                     /locus_tag="OQQ19_002646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS66-like element ISSfl3 family transposase"
                     /protein_id="HCS1804218.1"
                     /translation="APGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQ
                     LHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRR
                     IAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYI
                     LNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVT
                     CKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK"
BASE COUNT         4000 a         4101 c         3893 g         4127 t
ORIGIN      
        1 tcgtacccat ttaccgttta tcccttgtac atattccccc ggtttggccc gagctacgag
       61 cttttgcccg gcgagtttcg cgatatcatc tacagacaca ttattttgct ttgccagttg
      121 ttggtaactc gctttacgtt cggcattaat gtcggttact aatttctctg tttcagcatc
      181 cgttttcagc gcaaccagat aaccataaaa tgtttccccg acccgcccct gcgttctggc
      241 ttcatccaga gtcaatgcca ttacattgct gcttaccagc ccaacaagaa acgcacaaag
      301 aagtaatgtt ttcttcatca tcgcctcagt aaagatcgct acgagtttca agcagctctt
      361 cgacatcttt gtctgccttg atgatgatct catgctcaat tttaacgttc atattgatag
      421 tgatcggttc cttgggcgca gcgacttcaa tacgcggcgt acaggcagcc agcataaaag
      481 atgacgtcaa cgcagccagt aaaattttca ttgtttttcc tcacactctt ttccttgcgg
      541 acagtcattt cccggcagac gtgcgttctg ctccaaccat gcctggagat tatcgccaaa
      601 gcgtaaactg cgccacagcg taaaaatatt ctcttcatga tggtaattaa ggtttaccgt
      661 accgctttta ccatcaacgc gactggtacc tgtaatgttg gcctgcatgg ttaataaacc
      721 gagattatct aaattaatat ttgtcgatga acggctaatt tccatatagc gcaaccagtt
      781 aattgctgaa cccgcagtca tattgtcttt caccaccgca tctgcggtgt ctttatccag
      841 ccgcaaggtc attggcccgc tatttgccag ccaaccatct ttcactatcc atttttcgtt
      901 gtttagccat aacggcaatg caccactaaa tgccccggac atggcgaatt gtttcggatt
      961 gacggcgcta accagttcgc tggatgagag attattcagc cgcaacagcg ccgggtcatg
     1021 ttgcggcata cgtaattgtt tcatcagtac gttaccgcct aacacatcga cgctaacatc
     1081 agtcaacagc aagggttctt cttcagtcca cggataacgc ccttgcaaat cagccgtaat
     1141 atttttcgct gtcaccagat taatcacttc ggcaattcgc aacgtaacgg ggccgcgagt
     1201 ccccagatgc caggctccat cggcaaaacg gaaaggcagg acaaaatcga caccgttaac
     1261 ctgattatct ggcatccagg cactaccgcc tttcaacacg ccgtgccctc ccgcgcggaa
     1321 tccttgttca ggcgcagcag aaaatgcaac ctgagcatac agttcaccat cgcgtaagtt
     1381 catcttccag tcgggtggca ccagcggctg gaatacagtc agtgattgtt ttggccacca
     1441 ggcgttaccg cgcagacgaa taccgtccca gcgaccattt acccgaaccg ggccaatctc
     1501 accagcatgt aaatcgcctt taaagaggaa atacgtcgga tcgcgcccat cgacgctaaa
     1561 ttttaaggtt gatggcggta acacactgcc gccagtgaac agcgtttgcc cggcgtccag
     1621 tgacagcgcg ccgctgaagg agggatgctg tgcgtcacgt acccagacga cgggcttgtc
     1681 cagaattaat cgcggctttt ctaccgtcat cgtaccgtat tgtaactggt cgaaaccggt
     1741 ggagaggtcg gtcagcgtaa tcgtgctgtc atgccattca ccttttcctg cgacatccca
     1801 ggtggcattc atcggtgtaa aactgccttt tccccagtag cgccactgcc agcggcccgc
     1861 gtcagggaga aaatcattcg ccagcccatc catatgcagc acgaaatcgc ccagttcatt
     1921 ttcatgcgcc tgcaaaatgg cctgcaaacg tccgtcaaca ccacgttggg tgacttttac
     1981 acccgctaaa ggccagcgga tttcatcgat gtccagcgaa tcgatgactc ttccctttga
     2041 acgaagtaac gcgcctggct caaaggccag cgttgggtca gtcagacttc cacttagctg
     2101 cgcgggtaag cgggcatata aaatgaggtc cgcctgtttc gcttcaccgg tcagctgcag
     2161 aggcagctgg ctgttatcca tgcttaattt tcctgggcca aaatttagca ccgcgttgcc
     2221 tttacccgct tgcccctggg tcagcacact cagtcgtccg ctgatcagag cgttctcaag
     2281 ccctgcctgc cagttgtcga ctttgacacc cagtcggcca ctcaaaggaa aacctgcata
     2341 cggccaactc cagcgaccat cgcttacggt caattgttga cgagtaattt gccacggcaa
     2401 atcgagcaac ggatcgccgt tatcacgtgc cagcacaatc aattgcccgc tattttcctg
     2461 ccagtccagc tctgcatcca ccagtgacgg ttcctgcggc aagtttaacg tcgcagtagc
     2521 atgcccactt acaggaagtc catccggcac gagcggcata gtaaattccc ccaccagttt
     2581 aaccggcggc tgatattcaa acgcgatgac atccagttcg ctgactgtaa gttgttgccc
     2641 tttcagctgg ccttgaaatt taactttttc gccctgataa cgcagttgct ggatatcaga
     2701 ggttaatgcg agagagagtt ttccctgcca ttcctgccag ggagaaaaaa tcagtttatc
     2761 gatattgatc caggtgttag gcagcatgga ctgccactgc gcgagggttt ttggagcagc
     2821 tggcgattgc tccgtctgcg gcaatttcgc cagacaagca gaatcaagtt ctaccgtgcc
     2881 gacgttcaat aaccagcggc tgggatgtga aaggctggcg ttggtgatat gtgcaagctg
     2941 acaatctccc accagataac ggagatcggg aatgattaaa cctttacgcg taatgcgtgg
     3001 gctttcatct aatgcaatac gtgtcccgag cggtagccag atgcccgcca gcgtgggaac
     3061 ccacagcccg agcgtcatca gcagcgtcaa cggcacaaga ataatcagta ataacagcgc
     3121 gagaacggct ttatatttac ccagcatggg tagttaatat cctgatttag cgaaaaatta
     3181 agcattcaat acgggtattg tggcatgttt aaccgttcag ttgaaggttg cgcctacact
     3241 aagcatagtt gttgatgaat ttttcaatat cgccatggtt ttcaattata tttgaaattt
     3301 tgtaaaatat ttttagtggc ttaaatgtga ttcaacatca ctggagaaag tcttatgaaa
     3361 ctcgccgttt atagcacaaa acagtacgac aagaagtacc tgcaacaggt gaacgagtcc
     3421 tttggctttg agctggaatt ttttgacttt ctgctgacgg aaaaaaccgc taaaactgcc
     3481 aatggctgcg aagcggtatg tattttcgta aacgatgacg gcagccgccc ggtgctggaa
     3541 gagctgaaaa agcacggcgt taaatatatc gccctgcgct gtgccggttt caataacgtc
     3601 gaccttgatg cggcaaaaga actggggctg aaagtagtcc gtgttccagc ctatgatcca
     3661 gaggccgttg ctgaacacgc catcggtatg atgatgacgc tgaaccgccg tattcaccgc
     3721 gcgtatcagc gtacccgtga cgctaacttc tctctggaag gtctgaccgg ctttactatg
     3781 tatggcaaaa cggcaggcgt tatcggtacc ggtaaaatcg gtgtggcgat gctgcgcatt
     3841 ctgaaaggtt ttggtatgcg tctgctggcg ttcgatccgt atccaagtgc agcggcgctg
     3901 gaactcggtg tggagtatgt cgatctgcca accctgttct ctgaatcaga cgttatctct
     3961 ctgcactgcc cgctgacacc ggcaaactac catctgttga acgaagccgc cttcgatcag
     4021 atgaaaaatg gcgtgatgat cgtcaatacc agtcgcggtg cattgattga ttctcaggca
     4081 gcaattgaag cgctgaaaaa tcagaaaatt ggttcgttgg gtatggacgt gtatgagaac
     4141 gaacgcgatc tgttctttga agataaatcc aacgacgtga tccaggatga cgtattccgt
     4201 cgcctgtctg cctgccacaa cgtgctgttt accgggcacc aggcattcct gacagcagaa
     4261 gctctgacca gtatttctca gactacgctg caaaacttaa gcaatctgga aaaaggcgaa
     4321 acctgcccga acgaactggt ttaatgttgc agctcccctg caatccaggg gagctgattc
     4381 agataatccc caatgacctt tcattctcta ttcttaaaat agtcctgagt cagaaactgt
     4441 aattgagaac cacaatgaag aaagtagccg cgtttgttgc gctaagcctg ctgatggcgg
     4501 gatgtgtaag taatgacaaa attgctgtta cgccagaaca gctacagcat catcgctttg
     4561 tgctggaaag cgtaaacggt aagcccgtga ccagcgataa aaatccgcca gaaatcagtt
     4621 ttggtgaaaa aatgatgatt tccggcagca tgtgtaaccg ctttagcggt gaaggcaaac
     4681 tgtctaatgg tgaactgaca gccaaagggc tggcaatgac ccgtatgatg tgcgctaacc
     4741 cgcagcttaa tgaactcgat aacaccatta gcgaaatgct gaaagaaggt gcacaagtgg
     4801 atctgaccgc gaaccagtta acgctggcga ccgcgaaaca gacattaact tataagctgg
     4861 cggatttaat gaattaatag ctgccacagc tcccggcggc aagtgactgt tcgctacagc
     4921 gtttgccgtt gggtaatgca cacatcccaa tcgccgtgcc atccagttga cgggcaacag
     4981 aaagcgaacc gccgatcatt gcacaatttg cttctccact actggacatc gacgctttta
     5041 aacctggcgc tacgtgcgcc gcagtcgcct gctgaacagg ttcactacta cacgccgaca
     5101 acaataaagc ggcacaccct acccaaaacg ctgctcgcat cttttcttcc tctgatcttc
     5161 aagccaaacg acaccgccat aaataatagg cagcacagag ggcgacatcg agagctgtcc
     5221 tgcgcgttgc cccgcatttt tactttttta tggctatttt tttgccctct gtttgatcaa
     5281 aacattcatt acgctgatgt gggggacaca aaagcgaaaa tgcagaagaa agccatttgc
     5341 taaaattgaa agattactac tgggcgcgca gcaatttcgt gcgcccctca tttgcgcaat
     5401 gtaagggtgt catatgatta ctattgacgg taatggcgcg gttgcttcgg tggcgtttcg
     5461 caccagtgaa gttatcgcca tctaccctat tacccccagt tccacgatgg cagaacaggc
     5521 tgatgcctgg gccggaaacg gcttgaagaa cgtttgggga gacacaccac gcgtggttga
     5581 aatgcagtcg gaagcgggtg ctatcgctac cgtgcatggc gctttgcaga cgggtgccct
     5641 ttcaacatcg tttacgtcat cgcagggttt gctgctgatg atcccgacac tgtacaaact
     5701 ggcaggcgaa ctcacaccgt ttgtcctgca tgtagcggca cgtaccgttg ccacacatgc
     5761 actctctatt tttggcgatc attccgacgt catggcggtg cgccagacgg gttgcgcgat
     5821 gttgtgtgcg gcaaacgtcc aggaagcgca agactttgct ctcatttcgc acatcgcgac
     5881 gctgaaaagc cgcgtgccat ttattcattt ctttgatggt ttccgcacgt cccacgaaat
     5941 caataaaatt gtcccgctgg ccgatgacac gattcttgat ctcatgccgc aggccgaaat
     6001 tgatgctcat cgcgcccggg cgctcaaccc ggaacatccg gtgatccgtg gtacgtccgc
     6061 caatcctgac tcttatttcc agtctcgcga agccaccaac ccctggtaca acgcagtcta
     6121 tgaccatgtt gaacaggcga tgaatgattt ctctgccgcg acaggtcgtc agtatcagcc
     6181 gtttgaatat tacgggcatc cgcaagctga acgggtgatt atcctgatgg gctcagccat
     6241 tggcacctgt gaagaagtgg ttgatgaatt gctaacccgt ggcgaaaaag tcggcgtgct
     6301 gaaagttcgc ctgtaccgcc ccttctcagc caaacacttg ctacaaactc taccgggatc
     6361 cgtacgcagc gtggcggtac tggacagaac caaagaaccc ggtgcccagg cagaaccgct
     6421 ctatctggat gtgatgaccg cactggcaga agcctttaat aatggcaagc gcgaaactct
     6481 gccccgtgtc attggtgggc gctatggtct ttcatccaaa gaatttggcc cggactgtgt
     6541 actggcggta tttgccgagc tcaacgcggc taaaccgaaa gcgcgcttta cggttggtat
     6601 ttacgatgat gtaaccaatc tgtccctgcc gttgccggaa aacacccagc caaactcggc
     6661 gaaacttgaa gccttgtttt atggccttgg tagtgatggc agcgtttccg cgaccaaaaa
     6721 caatatcaag attatcggta attccacgcc gtggtacgca cagggctatt ttgtttacga
     6781 ctccaaaaaa gcgggcggcc tgacggtttc tcaccttcgc gtgagcgaac agccgattcg
     6841 ttccgcttat ctcatttccc aggctgattt tgttggctgc caccagttgc agtttatcga
     6901 taaatatcag atggctgagc gtttaaaacc tggcggcatt ttcctgctca acacgccgta
     6961 cagcgcagat gaagtgtggt cgcgcttgcc gcaagaagtt caggccgtgt taaaccagaa
     7021 aaaagcgcgc ttctatgtga ttaacgcggc gaaaatcgcc cgcgaatgtg gcctggcggc
     7081 ccgtattaat accgtcatgc agatggcttt tttccatctg acgcaaattc tgcctggcga
     7141 tagcgccctc gcagaattgc agggtgcgat tgccaaaagt tacagtagca aaggccagga
     7201 tctggtggaa ggcaactggc aggctctggc gctggcgcgt gaatccgtag aagaagttcc
     7261 gttgcaaccg gtaaatccgc acagcgccaa tcgaccgcca gtggtttccg atgccgcccc
     7321 tgatttcgtg aaaaccgtaa ccgcagcgat gctcgcaggg cttggtgatg ccctccccgt
     7381 ttcggcgctg ccgccagacg gcacctggcc gatggggacc actcgctggg aaaaacgcaa
     7441 tatcgccgaa gagatcccca tctggaaaga ggaactctgt acccaatgta accactgcgt
     7501 cgccgcttgc ccacactcag ctattcgcgc aaaagtggta ccacccgaag cgatggaaaa
     7561 cgcccctgcc agcctgcatt cgctggatgt gaaatcgcgt gatatgcgcg ggcagaaata
     7621 tgtcttgcag gtggctccgg aagattgcac cggttgtaac ctgtgcgtcg aagtttgccc
     7681 ggcgaaagac cgtcagaatc cagagattaa agccatcaat atgatgtcgc gcctggaaca
     7741 tgtcgaagaa gagaaaatca attacgattt cttcctcaac ctgccagaaa tcgaccgtag
     7801 caaactggaa cgtattgata ttcgtacatc gcagctgatt acaccgctgt ttgaatattc
     7861 cggtgcttgc tccggttgtg gcgagacgcc gtatattaaa ttgctgactc agctctatgg
     7921 cgaccggatg ttgatcgcta acgccaccgg ctgttcttca atttatggcg gtaacctgcc
     7981 ctctacaccg tataccaccg atgccaacgg tcgtgggccg gcatgggcga actctctatt
     8041 tgaagataat gccgaatttg gccttggttt ccgcctgacg gtcgatcaac accgtgtccg
     8101 cgtgctgcgt ctgctggatc aatttgccga taaaatcccg gcggaattac tgacggcgtt
     8161 gaaatcagac gctacgccag aggttcgtcg agaacaggtc gcagctttac gccagcaact
     8221 caacgatgtt gccgaagcac atgaactgct acgtgatgca gatgcactgg tggaaaaatc
     8281 aatctggctg attggtggtg atggctgggc ttacgatatc ggctttggcg gtctggatca
     8341 tgtattgagt ttgacggaaa acgtcaacat tctggtgctg gatacgcaat gctattccaa
     8401 caccggtggt caggcgtcga aagcgacacc gctgggtgca gtaactaaat ttggcgagca
     8461 cggcaaacgt aaagcgcgta aagatcttgg cgtcagtatg atgatgtacg gtcatgttta
     8521 tgtggcgcag atttctctcg gcgcgcagct gaatcagacg gtgaaagcga ttcaggaagc
     8581 ggaagcgtat ccgggaccat cgctgatcat tgcttatagc ccgtgtgaag agcatggtta
     8641 cgatctggca ctcagccatg accagatgcg ccaactcaca gctaccggct tctggccgct
     8701 atatcgcttc gatcctcgtc gtgccgatga aggcaaactg ccgctggcgc tggattcacg
     8761 cccgccgtca gaagcactgg aagaaacgtt acttcacgag caacgtttcc gtcgtctgaa
     8821 ttcgcagcag ccagaagtgg cagaacagtt atggaaagat gctgcagctg atttgcaaaa
     8881 acgctatgac ttcctggcac aaatggccgg aaaagcggaa aaaagcaaca ccgattaaat
     8941 gctctggata aggattatcc aattctaaaa aaaagcccgg acgactgttc gggcttgtct
     9001 ttttatatgt tggaaaatca gtggcaatgc aatggcccaa cagaaaataa aatctgtgac
     9061 aataaaggca tataacccgc gcagaataac gtatagaaaa ttaaaagtat aatttttatt
     9121 ttgtatgtat tatcttcgat acattcacca gacttattat catttcagaa gaattatttg
     9181 attaaggttt tacttaaggc gtaacaaatg atatttatcg gctaactgaa cttctccttt
     9241 aggatgtttt cactccccgg aatggggata aaaggcaaat aaaataacta aaggatttat
     9301 tcaatgaaaa gcaaagtact ggcactttta attcctgccc tgctcgccgc aggtgctgca
     9361 catgcagccg aagtttataa taaagacggc aacaaattag atctgtatgg caaagttgat
     9421 ggcctgcatt atttttctga taattcagcg aaagatggcg atcagagcta tgcgcgtctg
     9481 ggttttaaag gcgaaaccca aattaacgat caactcactg gctacggtca atgggaatac
     9541 aatattcaag caaacaacac tgaatcttca aaaaaccagt catggacccg tctggcattt
     9601 gccgggctga aatttgcaga ttacggttct ttcgattacg gacgtaatta tggcgtaatg
     9661 tacgacatcg aaggctggac cgatatgctg cctgaatttg gcggtgactc ttataccaat
     9721 gcagacaact ttatgactgg tcgagccaat ggcgtcgcga cttatcgtaa tactgatttc
     9781 ttcggtctgg taaatggtct gaacttcgcg gtgcagtatc aaggtaacaa cgaaggagcc
     9841 agtaatggtc aggaaggcac caacaacgga cgtgatgttc gccatgaaaa cggtgacggc
     9901 tggggttttt ccacaacata tgatttaggc atgggcttta gcgctggtgc ggcatacacc
     9961 tcttctgacc gcaccaatga ccaggttaac catactgcgg cgggtggtga taaagcagac
    10021 gcgtggactg ctgggctaaa atacgatgct aacaatattt acctggcaac catgtattca
    10081 gaaacgcgta atatgacccc gtttggcgac agcgattatg ctgtggcaaa caaaacccag
    10141 aattttgaag tcactgccca gtaccagttt gattttggtc tgcgtccggc agtctctttc
    10201 ctgatgtcta aaggccgtga cctgcacgct gccggtggtg cagacaaccc ggcaggtgtt
    10261 gatgataaag atctggttaa atacgccgat gttggcgcga cttactattt caataaaaac
    10321 atgtccacct acgttgacta taaaatcaac ctgttggatg aagatgacag cttctacgct
    10381 gccaatggca tctctaccga tgatattgtc gctttaggtc tggtttatca gttctaaatc
    10441 ctcctgcccg ctgttatggc gggctttttc tgcttattct tcctcctttg atctaaatta
    10501 aaaatgtgaa ctccatcatt acacaaaaag tgtcatctgg cgttacactt tatgcggata
    10561 ctaaaacagg aggttttatg aacagaacga ttcttgtccc tatcgatatt tccgattcag
    10621 aattaactca acgcgtgatt agccacgttg aggcagaggc aaagattgac gatgcagagg
    10681 ttcatttcct gacggtaata ccttcactgc cctactatgc ctctctgggt ttagcgtatt
    10741 ccgcagaatt accggcaatg gatgacctga aagcggaagc caaatcgcaa ctggaagaga
    10801 tcattaaaaa atttaaactg ccaaccgaca gagtgcatgt ccatgttgag gaaggctcgc
    10861 ccaaagaccg cattctggaa ttggcgaaga agatccccgc tcatatgatc atcattgctt
    10921 cccatcgacc ggatatcacc acttatctgc tcggttccaa cgccgcagct gtagtgcgtc
    10981 acgcagagtg ctccgtgctg gttgtgcgct gacactaacg cccgcacatt gctgcgggct
    11041 ttttgattca tttcgcaaat gtgctgacat tttcccctct aatccgtacc atacacgcca
    11101 ctgtttttat atcagatttc ttatgctggg cattccggca tgacgcatac tcttctgatg
    11161 ccatataacg aattgagtcg cttttaaatg tcgcaaaatc aagaatttag taagaaagaa
    11221 caatacaacc tgaacaagta agggcaaaaa tcacaactat ctgactcata agtattttat
    11281 ttatttttca atatgttaaa cattatcagc gacaacaata agctacgata acccactctt
    11341 tttttgcccc atttttgcca tcaacaattt tcctcataaa gtcatttcaa agcctaatag
    11401 ctgctctact tttttcctca atatcatgtc gccagcagga aacaacctaa tccctgtttt
    11461 aggcctcaaa gctgttaatg ataattattt tcattttgta taggttatgc tataaaacat
    11521 agccgttgct atgtttgttc taattttgct cactataggt actaaattat gcactcaata
    11581 aaaaaagtaa ccatgctctt ggggtgcctc gccctcacct gctcgatcgc atttcaggca
    11641 agtgcaactg aaaaattcaa ggtcattaca acatttacca tcatcgcgga tatggccaaa
    11701 aacgtggctg gagatgctgc agaagtctca tccataacca agcctggtgc agaaattcat
    11761 gagtatcagc ctacccctgg cgatattaaa cgtgcacagg gggcacaact gattctcgcc
    11821 aatggtatga atctggaatt gtggttccaa cgcttttacc agcatctcaa tggggttcca
    11881 gaagtaattg tctcttcggg tgtgacgcca gtagggatca ccgaaggacc ctatgagggc
    11941 aaacctaatc cccatgcatg gatgtcgcca gataatgctc tgatttacgt cgataatatt
    12001 cgtgatgcgt tgataaaata cgatccggca aatgcacaaa cctaccaacg taatgccgat
    12061 acttataaag ccaagattac ccaaaccctt gcccccctgc gtaagcagat tacggaactc
    12121 cctgagaatc agcgatggat ggtcaccagt gaaggggctt tttcttatct cgcacgcgat
    12181 ttggggctaa aagagcttta tctgtggccg attaatgccg atcaacaagg aacaccgcag
    12241 caggtacgta aggttgttga tatagttaag aaaaatcata tcccggcagt ctttagcgag
    12301 agtacgattt ccgataaacc agcgcgtcag gttgcgcgtg aaaccggcgc acactacggc
    12361 ggtgtgctct atgtcgattc cctgagcaca gaaaacggcc cggtacctac gtatatcgac
    12421 cttcttaagg ttactaccag tacgctggta cagggaatta aagccgggaa aagggagaaa
    12481 taatgatgca atctgcaggc attgtcgtta atgatgttac tgtcacctgg cgtaacgggc
    12541 acacagcact gcgcgatgca tccttcacag taccaagtgg atctattgcc gctctggttg
    12601 gggtaaacgg ttccggaaaa tcgacgttgt ttaaagcgat tatgggattt gtgcgtctga
    12661 ccagcggaaa gatatctgtt ctgggtattc ccacgcgaca ggcgctacag aaaaacctgg
    12721 ttgcctacgt ccctcagtca gaagaggttg actggtcatt tcctgtactg gtggaagatg
    12781 tggtgatgat gggccgctat gggtatatgg gtatgttgcg tatagccaaa aagagggatc
    12841 gtcagattgt caccgatgcg ctggaacgtg tcgatatggt ggattttcgc catcgtcaaa
    12901 tcggcgagct ttccggtgga caaaagaaac gcgtctttct ggcgagagcg attgcacagc
    12961 agggtgatgt gatcctgctg gatgaacctt ttaccggcgt tgatgtgaaa accgaagcga
    13021 aaatcatcag cctgttgagg gagttacgcg cggaaggcaa aacgatgctt gtctcaacgc
    13081 acaatctcgg ctcagtcacg acattttgcg attatacggt catggtcaaa ggcaccgtcc
    13141 tggcaagcgg gccgacagac accactttta cagccgagaa cctggagctg gcttttagcg
    13201 gcgtactgcg ccatgtcaca cttaacggct cggaagaaag cattattact gacgatgaac
    13261 gcccttttgt ggcacatcga ccgtcagcgg tgcagaggga agcaagatga acgtgctact
    13321 ggaacccttc agctatgaat atatgctcaa tgcgatgtgg gtctcggcaa tggtcggcgg
    13381 tctctgcgct ttcctgtcat gctatctgat gctaaaaggc tggtcgctga ttggcgatgc
    13441 gctgtcgcac tctattgtcc cgggtgttgc gggggcatat atgctggggc ttccgttttc
    13501 tctgggagcc ttcttttccg gcggactggc agcgggcagc atgctgtttc ttaaccaacg
    13561 cacccgctta aaagaagatg ccatcatcgg cctgatcttc tcgtcctttt ttggcctggg
    13621 gctgtttatg gtgtcattga acccgacatc cgtgaacatt cagaccatcg tcctgggcaa
    13681 tattctggca atcgatccgg cggatatcct gcaactcact atcattggca ttctctcgat
    13741 catcgtgctt tttttcaaat ggaaagatct tatggtgacc tttttcgacg agaatcacgc
    13801 ccgtgctatt ggattacatc cgggcagatt aaaaatcctc ttcttcaccc tgctgtcggt
    13861 ttcgaccgtt gcggcgctgc aaacggttgg tgcctttctg gtgatctgtc tggtggtgac
    13921 tcccggtgca acagcatggt tgttaaccga tcgttttccc cgcctgctca taattgctgt
    13981 aactattggc agtgtaacca gtttcctcgg cgcgtgggtc agttactttc tggacggcgc
    14041 gacaggtgga atcatcgtgg tggcgcagac actgctgttt cttttagcat ttgtatttgc
    14101 gcccacccat ggacttttgg caaatcgtcg gcgtgcgcat aaagcgctgg aggatcgctc
    14161 atgatggcat tattactgga gccactgcag ttcaccttta tgagtcacgc actgctgatt
    14221 tcactggtag tttccatacc ctgtgcgctg ctgtcggtct ttctggtcct gaaaggttgg
    14281 gcactgatgg gtgacgcgat gagtcatgcg gtttttcctg gcatcgtgct tacctggatt
    14341 ctggggttac ctctggctac aggggcattc gtcgccggag tattctgcgc ggtggcgacg
    14401 ggatacctga aagacaacag ccgaatcaag caagatacag ttatggggat tgttttttct
    14461 ggcatgtttg ccgcaggtct gatcttgtat attgcaatca aaccagacgt acatcttgac
    14521 catattcttt tcggcgacat gctcgggata accatcggcg atataatcca gacggtgatt
    14581 attgccgggc tggttacact tgttattagc gtaaaatggc gggatttttt gctgttcagc
    14641 tttgattatc aacaggcgca ggtaagcggt ttgcatacga gatggctgca ttatgggctg
    14701 ctgtgcatgg tttccctgac cattgtggcg acgctgaaag cagtaggtat cattctctct
    14761 atttctctgc tcattgcgcc tggcgccatt gcagtactcc tgacacaacg ctttcatatt
    14821 gcgctcctac tggcgactgg catatcggta atagtgtcaa tgactggtgt ctggctgtcc
    14881 ttttttatcg acagcgcacc agctccgacg attgtcgtct tattcgcggt cgtgttcatc
    14941 atgacgttta ccgttaccag catcaacgca cgcacaaagg gaaacgccca tacacaggat
    15001 ctgttatcac ccaattagca caatatccga ggacagcatc gtccgccagc gtccgccagc
    15061 ctacagaagt tcggaaagcc atggaaggtc gttgggagga ggtacgaatt ctatcatgca
    15121 aaaaatacgt aaaatcgata acgcctagaa atcattcaat actcgcacta tcgaaagttt
    15181 accagccaac cgcggcacgt tcctgcatac gacgtgccgc agcttctgtt attccacgat
    15241 aaaattccta accgaattca aatccttcag actattcagc tcttccttca gctcccgctg
    15301 acggcgataa atcgtaagcg ccccgagaag tacgtagcgt aaggattatt ttacagacga
    15361 gaagttccag ggcagcagtt catgcacttg gttcgacggc cagtcattga gcttctcgat
    15421 cacttcgcgc aaccagtcct ccggctccac ttcgttctgt ttgcaggtga ccagcagact
    15481 gtagatgatc gccgcacttt ctcctccctt gtctgagccg aaaaagagat aattttttct
    15541 tccaaccgcc accgatcgta acgcgttttc accgatgttg ttgtctattt ccacccagcc
    15601 gtcacgacag aactcgttca gcgcattcca gtgattcagg atatagtcga acgccttcgc
    15661 catctccgca tgtttcgaca gcgttttcct ctgcaactgt atccagtcgt acaatgactg
    15721 catcaactgg acgcttctgg cttttctgac tgcaagccgt tcctctgccg gactgccacg
    15781 tatctccgct tctatgtcgt ataactctgc tatccgtctg agcgcttcct gagtcatttc
    15841 tgtcggacgg cgcacatcct cgtcatggat ttttcggcgg gcgtgggcca ggcacccggc
    15901 ttccttcacc cggcccgttt cgtacagtac gttataacct gcataggcat cagcctgcag
    15961 tacgccctga tactttgcca ggtggagctg cggatgttct cctttgcgat ctgccgaata
    16021 cgcgaaccag acggctgccg gcagggatga acccgcatta cgatcatccc tgacgtatac
    16081 ccacagacga cccgttttcg tctttccgtt ccccggggcc a
//
LOCUS       DAJVSY010000094        15959 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.094, whole genome shotgun sequence.
ACCESSION   DAJVSY010000094 DAJVSY010000000
VERSION     DAJVSY010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15959)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15959)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15959
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.094"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            6..1241
                     /locus_tag="OQQ19_002647"
     CDS             6..1241
                     /locus_tag="OQQ19_002647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HCS1804219.1"
                     /translation="MSKLPTGVEIRGKYIRIWFMFRGKRCRETLKGWEITNSNIKKAG
                     NLRALIVHEISSGEFEYLRRFPQSSTGAKMVTTRVIKTFGELCDIWTKIKETELTTNT
                     MKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLHGETLYLDNPRSNKKGRTVRT
                     VDSYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPDPLSKTEFNALMESEKGQS
                     QNLWKFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTILDMFGPPKTNAGIRTVTL
                     LQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNEKQKPYYSVS
                     SLGARWNAAVKRAGIRRRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEIYG
                     MWIDDMNDEQIAMLNARLS"
     gene            1293..2228
                     /gene="ttcA"
                     /locus_tag="OQQ19_002648"
     CDS             1293..2228
                     /gene="ttcA"
                     /locus_tag="OQQ19_002648"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HCS1804220.1"
                     /translation="MQENQQITKKEQYSLNKLQKRLRRNVGEAIADFNMIEEGDRIMV
                     CLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHVLPVYLEKLGVEYKI
                     VEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFL
                     NMFYGGKMKGMPPKLMSDDGKHIVIRPLAYCREKDIQRFADAKAFPIIPCNLCGSQPN
                     LQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGITHGSEVVNGGD
                     LAFDREEIPLQPAGWQPEEDENQLDELRLNVVEVK"
     gene            complement(2357..3730)
                     /gene="dbpA"
                     /locus_tag="OQQ19_002649"
     CDS             complement(2357..3730)
                     /gene="dbpA"
                     /locus_tag="OQQ19_002649"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase DbpA"
                     /protein_id="HCS1804221.1"
                     /translation="MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVR
                     VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTK
                     ILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLD
                     MGFSDAIDDVIRFAPASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDSTDALPPIEQ
                     QFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLE
                     QRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTAR
                     AGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLEAEMATLCIDGGKK
                     AKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKT
                     CRVRLLK"
     gene            complement(4176..5159)
                     /gene="zntB"
                     /locus_tag="OQQ19_002650"
     CDS             complement(4176..5159)
                     /gene="zntB"
                     /locus_tag="OQQ19_002650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZntB"
                     /protein_id="HCS1804222.1"
                     /translation="MEAIKGSDVNVPDAVFAWMLDGRGGVKPLENTDVIDEAHPCWLH
                     LNYVHHDSAQWLATTPLLPNNVRDALAGESTRPRVSRLGEGTLITLRCINGSTDERPD
                     QLVAMRVYMDGRLIVSTRQRKVLALDDVVSDLEEGTGPTDCGGWLVDVCDALTDHSSE
                     FIEQLHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPW
                     MSDDQRRRMQDIADRLGRGLDEIDACIARTGVMADEIAQVMQENLARRTYTMSLMAMV
                     FLPSTFLTGLFGVNLGGIPGGGWQFGFSIFCILLVVLIGGVALWLHRSKWL"
     gene            5414..6646
                     /gene="dgcM"
                     /locus_tag="OQQ19_002651"
     CDS             5414..6646
                     /gene="dgcM"
                     /locus_tag="OQQ19_002651"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DgcM"
                     /protein_id="HCS1804223.1"
                     /translation="MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAARLLMQDLTFSQ
                     LRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRELTETEPVI
                     IFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAA
                     LNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQ
                     TYAGPIEIYGDKLMLCIVHDITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQM
                     QHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGE
                     EFVLLLPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDELFKRV
                     DDALYRAKNDGRNRVLAA"
     gene            complement(6667..7230)
                     /gene="smrA"
                     /locus_tag="OQQ19_002652"
     CDS             complement(6667..7230)
                     /gene="smrA"
                     /locus_tag="OQQ19_002652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA endonuclease SmrA"
                     /protein_id="HCS1804224.1"
                     /translation="MNLDDKSLFLDAMEDVQPLKRATDVHWHPTRNQRAPQRIDTLQL
                     DNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMV
                     FSFIHQALADGLRNVLIIHGKGREDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGG
                     SGACYVALRKTAQAKQENWERHAKRSR"
     gene            complement(7560..8468)
                     /locus_tag="OQQ19_002653"
     CDS             complement(7560..8468)
                     /locus_tag="OQQ19_002653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1804225.1"
                     /translation="MAFQVKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELE
                     EGLAAQLFFRRSKGVTLTDAGESFYQHASLILEELRAAQEDIRQRQGQLAGQINIGMG
                     ASISRSLMPAVISRFHQQHPQVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDHE
                     FTFEKLLEKQFAIFCRPGHPAIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQT
                     PQVGVVCETFSACISLVAKSDFLSILPEEMGCDPLHGQGLVMLPVSEILPKAAYYLIQ
                     RRDSRQTPLTPSLITQFRRECGYLQS"
     gene            8644..9944
                     /gene="abgA"
                     /locus_tag="OQQ19_002654"
                     /pseudo
     CDS             8644..9944
                     /gene="abgA"
                     /locus_tag="OQQ19_002654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415854.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="p-aminobenzoyl-glutamate hydrolase subunit AbgA"
     gene            9944..11389
                     /gene="abgB"
                     /locus_tag="OQQ19_002655"
     CDS             9944..11389
                     /gene="abgB"
                     /locus_tag="OQQ19_002655"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="p-aminobenzoyl-glutamate hydrolase subunit AbgB"
                     /protein_id="HCS1804226.1"
                     /translation="MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLA
                     SALESAGFTVTRNVGYIPNAFIASFGQGKPVIALLGEYDALAGLSQQAGCAQPTSVTP
                     GENGHGCGHNLLGTAAFAAAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGV
                     FDDVDAALTWHPEAFAGMFNTRTLANIQASWRFKGIAAHAANFPHLGRSALDAVTLMT
                     TGTNFLNEHIIEKARVHYAITNSGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAK
                     IAEGAALMTETTVECRFDKACSSYLPNRTLENAMYHALSHFGTPEWNSEELAFTKQIQ
                     ATLPPNDRQNSLNNIAATGGENGKAFALRHRETVLANEVAPYAATDNVLAASTDVGDV
                     SWKLPVAQCFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATTLNLFIDSGL
                     LQECQQEHQQVTDTQPYHCPIPKNVTLSSLK"
     gene            11426..12952
                     /gene="abgT"
                     /locus_tag="OQQ19_002656"
                     /pseudo
     CDS             11426..12952
                     /gene="abgT"
                     /locus_tag="OQQ19_002656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415852.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="p-aminobenzoyl-glutamate transporter"
     gene            12963..13478
                     /gene="ogt"
                     /locus_tag="OQQ19_002657"
     CDS             12963..13478
                     /gene="ogt"
                     /locus_tag="OQQ19_002657"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HCS1804227.1"
                     /translation="MLRLLEEKIATPLGPLWVICDEQFRLRAVEWEEYSERMVQLLDI
                     HYRKEGYERISATNPGGLSDKLSDYFAGNLSIIDTLPTATGGTPFQREVWKTLRTIPC
                     GQVMHYGQLAEQLGRPGAARAVGAANGSNPISIVVPCHRVIGRNGTMTGYAGGVQRKE
                     WLLRHEGYLLL"
     gene            13673..14425
                     /gene="fnr"
                     /locus_tag="OQQ19_002658"
     CDS             13673..14425
                     /gene="fnr"
                     /locus_tag="OQQ19_002658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007849744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate/nitrate reduction transcriptional
                     regulator Fnr"
                     /protein_id="HCS1804228.1"
                     /translation="MIPEKRIIRRIQSGGCAIHCQDCSISQLCIPFTLNEHELDQLDN
                     IIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFD
                     AIGSGHHPSFAQALETSMVCEIPFETLDDLSGKMPNLRQQMMRLMSGEIKGDQDMILL
                     LSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRF
                     QKSGMLAVKGKYITIENNDALAQLAGHTRNVA"
     gene            14577..15527
                     /gene="uspE"
                     /locus_tag="OQQ19_002659"
     CDS             14577..15527
                     /gene="uspE"
                     /locus_tag="OQQ19_002659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspE"
                     /protein_id="HCS1804229.1"
                     /translation="MAMYQNMLVVIDPNQDDQPALRRAVYLHQRIGGKIKAFLPIYDF
                     SYEMTTLLSPDERTAMRQGVISQRTAWIHEQAKYYLNAGVPIEIKVVWHNRPFEAIIQ
                     EVISGGHDLVLKMAHQHDRLEAVIFTPTDWHLLRKCPSPVWMVKDQPWPEGGKALVAV
                     NLASEEPYHNALNEKLVKETIELAEQVNHTEVHLVGAYPVTPINIAIELPEFEPSVYN
                     DAIRGQHLLAMKALRQKFGINENMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGI
                     SAAFLGNTAEQVIDHLRCDLLVIKPDQYQTPVELDDEEDD"
     gene            complement(15577..15835)
                     /locus_tag="OQQ19_002660"
                     /pseudo
     CDS             complement(15577..15835)
                     /locus_tag="OQQ19_002660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309940.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2534 family protein"
BASE COUNT         4134 a         3949 c         3915 g         3961 t
ORIGIN      
        1 atgatatgtc taaattacca acaggtgtcg agattcgagg taaatacatt cgcatctggt
       61 tcatgtttcg aggaaaacga tgtcgggaaa cattgaaagg ctgggagatt actaacagta
      121 acattaaaaa ggccgggaat ttaagagcgt tgatagttca tgaaatcagt tccggtgaat
      181 ttgagtattt aagacgtttt ccccagtcca gcactggggc aaaaatggtg acaacgaggg
      241 tcataaaaac attcggggag ctttgtgata tctggacaaa aattaaagag acagagttaa
      301 caacaaacac aatgaagaaa acgaaatcac aattaaaaac actcaggata ataatttgtg
      361 agagtacccc gatatcgcat attcgttata gcgatatctt aaactaccgg aatgaactgc
      421 tgcatggaga aacgctttac ctagataatc caagatccaa caaaaaagga agaaccgtgc
      481 gcacagttga tagctatatc gccctgctct gttcgttgtt acgttttgcg tatcagtcgg
      541 gatttatatc aaccaaacca tttgaaggag taaaaaaatt acagcgaaac agaataaaac
      601 ctgacccgtt atctaaaaca gaattcaatg cattaatgga aagtgaaaaa ggacagagcc
      661 aaaacttgtg gaaatttgcc gtttactccg ggcttcgtca cggggaactg gcagctctgg
      721 cgtgggagga tgtggatttc gagaagggaa ttgtgaatgt cagaagaaac ctgacgatac
      781 ttgatatgtt cggtccccca aaaacaaatg ccgggatccg gacggtaaca ttactgcagc
      841 cggctcttga agcactgaag gagcaataca aactgaccgg gcatcatcgc aaaagcgaaa
      901 tcacttttta tcatcgggag tacggcagaa ctgaaaagca aaaactgcat tttgttttca
      961 tgcccagggt gtgtaacgaa aaacagaaac cttattactc ggtaagcagt ttgggtgcaa
     1021 gatggaatgc agcagtaaaa cgtgctggta ttcgccgccg taatccgtac catacgcgac
     1081 atacttttgc ctgctggctg ttgacggcag gagcgaaccc ggcatttata gccagccaga
     1141 tggggcatga aactgcgcaa atggtgtatg aaatttacgg tatgtggatt gatgacatga
     1201 acgacgaaca gatagccatg ttgaatgcgc ggttatcgta gttgcaaagt ttgcccccaa
     1261 tttgccccat ttagtaccag agaactgaaa taatgcaaga aaatcaacaa attacaaaga
     1321 aagaacaata cagcctgaac aaattacaaa aacgtctacg tcgtaacgtg ggcgaagcca
     1381 ttgctgactt caatatgatt gaagaaggcg atcgcatcat ggtttgcctc tcagggggta
     1441 aagacagcta taccatgctg gagattctgc gcaatttgca gcaaagcgcg ccaatcaatt
     1501 tttcgctggt ggctgttaac ctcgatcaaa agcaaccggg cttcccagaa cacgttctgc
     1561 ccgtgtatct tgaaaagctg ggcgttgagt acaagattgt cgaagagaac acttacggta
     1621 tcgtgaaaga gaagattcca gagggcaaaa ccacttgctc actgtgttct cgccttcgtc
     1681 gcggtatcct ttatcgtacc gcaacggaac tgggggcgac gaagatcgcg ctgggtcacc
     1741 atcgtgacga tatcctgcag acgttgttct taaatatgtt ctacggcggc aagatgaaag
     1801 gtatgcctcc gaaactgatg agcgatgatg gcaaacatat cgttattcgt ccgctggcct
     1861 actgccgcga gaaagatatt cagcgatttg ccgatgcaaa agcgttcccg attattccgt
     1921 gcaacctgtg cggttcacag cctaacctgc aacgtcaggt gattgctgac atgttgcgtg
     1981 actgggataa acgttatcca gggcgtatcg agacgatgtt cagcgcgatg cagaatgtgg
     2041 tgccgtcgca tctgtgcgat accaacctgt tcgatttcaa aggcatcacc cacggttctg
     2101 aagtggttaa cgggggtgat ctggcgtttg atcgcgaaga gatcccacta caaccggcgg
     2161 gctggcagcc agaagaagat gaaaatcagt tggatgagtt acggctgaat gtggttgaag
     2221 tgaaataacc aggatagcgc ccgatgcgca agcgtatcgg gctactctta tggaggccgg
     2281 ataagacgcg gccaacgtcg catccggcaa tgccgaagaa gatgtttact cttgcacccg
     2341 gcaattcaac atttcattat tttaataacc gcacccggca cgtttttcct ttaatcttcc
     2401 cgccctgtaa ctgtttccat gctttatgag caacagcctg acggaccgcg acatagacat
     2461 gcgccggatg cacggcgatt ttgccaatat ctgcgccatc aagcccgata tctcctgtca
     2521 gtgcacctaa tacatcaccc gggcgcattt tggctttttt cccgccatcg atacacaacg
     2581 ttgccatttc tgcttccagc ggcacaatgg aactattagc tggcggcgtt tgccagttaa
     2641 gttttatctg caacatgtca gaaatgatat tggcccgctg tgcttcttcc ggagcacaga
     2701 aactgatcgc cagaccgcta tttcctgcac gagctgtacg gccgatgcga tgtacatgaa
     2761 cttcagggtc ccacgccagc tcaaagttca ccaccagctc aagcgattta atatccagac
     2821 cacgcgcagc aacatcagtc gcaaccagta cacgggcgct accgttagca aaacgtacca
     2881 gggtctgatc gcgatcgcgt tgctccaaat cgccgtgtaa tgacaatgca ctttgcccta
     2941 cttcattcag cgcgtcgcag acagcctggc aatctttttt ggtattgcaa aacaccacgc
     3001 aagaggatgg ctgatgcaag cttaataacc gttgcaacag aggaattttg cctttgctgg
     3061 atgtctcata aaattgttgt tcaatgggtg gcaaagcatc tgttgagtca atttcaatcg
     3121 ccaaaggatc gcgttgcact cgtccgctga ttacggcgat ggcttccggc caggttgccg
     3181 aaaacagaag cgtctgtcga gatgcaggcg caaaacggat gacatcatca atggcatcgc
     3241 taaatcccat atccagcatg cggtcggcct catccatcac caaagtattc agcgcatcca
     3301 gtgataccgt gcctttttgc aagtgatcca gcaaacgacc cggcgttgcc acgataatat
     3361 gcggcgcatg ttgcaacgaa tcacgctgca taccgaacgg ttgaccaccg cacaacgtca
     3421 aaattttggt atttggcaga aaacgcgcca gccgacgcaa ttcacctgcc acctgatccg
     3481 ccagttcacg cgtaggacac agcactaaag cctgggtttg aaatagcgac gcatcaattt
     3541 gctgtaacaa gccgaggcca aaagccgccg ttttgccgct gccggttttc gcctgcacgc
     3601 gaacatcttt tccggcaagg atcgccggaa gcgcggcggc ctgcaccggc gtcatagtta
     3661 aataacccaa ctcattaagg ttcgtgagtt gggcgggagg caaaacattc agggtagaaa
     3721 aagcggtcac aatctattct cgtggtcatc gacgcaaagt tagcaggcgc gtatcctcgc
     3781 agatctacgc gggtggtggg tcaggcatgg gttgcgggcg agggatcgga tcgggcactg
     3841 gaacaggatc gccaggaatc ggttcaggga caggaatttg caaataaata agtgtcgtca
     3901 tatttccctc cggtcattgg gtggactctt aaagggtaga cgctgataaa taacaggcaa
     3961 aaaaaagccg actcatcaaa gtcggcgtcg tacgaatcaa ttgtgctatg cagtaattca
     4021 aaaaaggaag taagacaata tggagcgcaa cgcccatcgc ttgacgttgc attcacctgc
     4081 aagggagata ttgccctgaa tgggtagaga gtttattgac ttcgctcaaa ctttgcggcg
     4141 tttttgtata cagacagccg gaaaaattgc ttttgttaca accatttact acgatgcaac
     4201 cataaagcaa caccaccaat aagaacaact aacagaatac aaaaaattga aaatccgaat
     4261 tgccacccgc cgccagggat cccaccaagg ttgacgccaa ataaccctgt cagaaaggta
     4321 ctgggtaaaa agaccattgc catcaatgac attgtatagg tacgacgagc taaattttcc
     4381 tgcatcacct gagcgatttc atccgccatc acgccagtcc gtgctataca ggcgtcgatt
     4441 tcgtcaagac cgcgcccaag gcgatcggca atatcctgca tccgacggcg ttggtcatcg
     4501 ctcatccacg gcaaacgttc actggcaaga cgagcataaa catcacgttg cggtgccata
     4561 tagcgacgca tcacgattaa ttgtttgcgc agcagagcca ggaatccacg cggtggaatt
     4621 tgctgatcaa ggagattatc ttcaaggtcg ataattttat cgtgcagctg ctcgataaat
     4681 tcgctggaat gatcggtcaa cgcatcgcac acatccacca gccaccctcc gcaatcggtc
     4741 ggacccgtgc cctcttccag atcgctcacc acatcgtcca gcgccagcac tttgcgttgt
     4801 cgggtcgaaa caattaaccg cccgtccata tatacacgca tggcgaccag ttgatcgggg
     4861 cgttcatcgg tgctgccgtt tatacagcgc aatgtaatca gcgtgccttc accgagacgg
     4921 ctgactcggg gccgtgtgct ctcgcctgcc agcgcatcac gtacgttatt gggaagcagc
     4981 ggtgttgtcg ccagccattg ggcgctatca tggtgtacat aattaaggtg gagccagcag
     5041 ggatgcgctt catcaatcac atctgtattt tccagcggtt taacgccgcc tctaccatcc
     5101 agcatccagg caaatactgc atccgggaca ttaacgtccg atcccttaat cgcttccaca
     5161 gtgcctccat catcaacgca ttattttgta gtctagcctt ctggccctgt tacgcaacat
     5221 ctcatcaccc cattaccctg aaatgattaa taaaattctg tctaaattga atacaaaaag
     5281 caaaatgctt ttccgtatac aaaccgtgtg aagtgttaaa tagcgtctat cattatcaga
     5341 attatctgat catatgacgt ggcttttttg cgatcggata gcaacaaaaa ttgataaaaa
     5401 taacgggatc tcaatgatta cgcacaactt caataccctg gacttactca ccagtcctgt
     5461 ctggattgtt tcgccctttg aggaacagtt aatttatgcc aatagcgcgg cgcgactgtt
     5521 gatgcaagac ctcacgttta gtcagctacg aaccggaccc tattccgtct cctcacaaaa
     5581 agaactgccg aaatacctct ccgatctgca aaaccaacac gatattatcg aaatcctcac
     5641 tgttcagcgt aaagaagagg aaacagcatt aagctgtcgg cttgttttgc gagagctgac
     5701 agaaacagaa ccggtgatta ttttcgaagg tatcgaagcg ccggcaacgc tgggtttaaa
     5761 agccagtcgc tcggcaaatt atcagcgcaa aaaacaaggt ttttatgcgc gcttttttct
     5821 gactaactct gcaccaatgt tgttgattga cccctcacga gatggccaaa tcgtcgatgc
     5881 taacctcgcc gcgctcaatt tctacggtta taaccatgaa acgatgtgcc agaaacatac
     5941 ctgggaaatt aatatgctcg ggcgtcgcgt catgcctatc atgcatgaaa tttcgcattt
     6001 acccggcggt cataaacctt tgaattttgt tcataaactg gcggatggat ctactcgtca
     6061 tgtgcagacc tatgccgggc cgattgaaat ttatggcgac aagctcatgt tatgtattgt
     6121 gcatgatatt actgagcaaa aacggctgga ggagcagctg gaacatgctg ctcaccatga
     6181 cgcgatgacc ggattactga atcggcgaca gttttatcac attacggaac caggccaaat
     6241 gcagcacctc gccatcgccc aggattacag cttgttgctc atcgacaccg atcgttttaa
     6301 acacattaac gatctctatg ggcattctaa aggtgatgag gtgttatgcg ccctcgcccg
     6361 caccctcgaa agttgcgctc gcaaaggcga tttggtgttt cgttggggag gcgaagagtt
     6421 tgtcttattg ctaccaagaa ccccactgga taccgcgctt tcgctggctg aaactatccg
     6481 tgtaagcgtg gccaaagtga gtatttcggg cttaccacgt tttaccgtca gcattggtgt
     6541 ggcgcatcac gaaggaaatg aaagcatcga tgaactgttt aaacgcgttg atgatgcttt
     6601 gtatcgggcg aaaaatgatg gacgcaaccg cgtgctggcg gcataagccg cggatgcgtc
     6661 tcgagatcaa cggctgcgct tagcgtggcg ctcccagttt tcttgcttcg cctgcgccgt
     6721 tttacgtagt gcgacgtaac acgccccgct gccgccatga tgcggtagcg cggtgcaata
     6781 tgcctgaaca tcatcaaatt cggtcagcca gcgcgccaca tagctgcgga caatattggc
     6841 atgcgattta tcttcccgcc ctttaccatg aataatcagc acattacgca aaccatccgc
     6901 cagggcttgg tgaatgaaac tgaacaccat tttgcggcac tcttccaccg gctggcgcaa
     6961 aagattcagg ctcgcctgtt gcggatattt accactgcgc agcttatcca gcaccccatg
     7021 ttgcaaccct tcccgccgaa actccagcgg ctgacttagc gggatgatgt cgagaaatcc
     7081 ggtggtgagg aaattatcaa gctgcagcgt gtcgatacgc tgcggcgcac gttggttacg
     7141 cgttggatgc cagtggacat ctgtagcacg tttcagcggc tggacatctt ccatggcgtc
     7201 aagaaacagc gatttgtcgt caaggttcat gttacatcct cccgcaatta agagcgcgat
     7261 atgataacca gaccgggtcg gtccaacaac gtattaccaa aaattccagt aataagttcc
     7321 aaatattgcc gatattttaa gcaaaatgct tatgcatgat tattcattca cgatattaat
     7381 aatgtaactt atattttcgt gaaatctgtc actgaagaaa attggcaact aaaggttaaa
     7441 accgttataa cacagtcacc ggcgcagagg agacaatgcc ggacttaaga cgcggatgca
     7501 ctgctgtgtg tactgtagag tctggcggat gtcgacagac tctatttttt tatgcagttt
     7561 taactttgca gatagccgca ttctcgccgg aattgcgtga ttaatgacgg ggtcagtggt
     7621 gtctggcgac tatcacgccg ctgaatcaaa taataggccg ctttcggtaa aatttcgcta
     7681 accggcaaca tcaccagccc ctgtccgtgc aagggatcgc agcccatttc ttcaggcagt
     7741 atgctgagaa aatcgctttt tgccaccaga ctgatacagg ctgagaacgt ctcgcagact
     7801 acaccgacct gtggcgtttg cgcctgatcg tcaagcaatt cactcaactg tttgtagtaa
     7861 ctgccgtgtg gcgtcggcat tgtccagctg taatccagta actgtttgat cgaacgggca
     7921 ccaatggcgg ggtgtcccgg gcggcaaaag atcgcgaatt gcttttccag taatttctca
     7981 aaagtaaatt cgtggtcgta cggtccctga taataggtat tgatggtgaa atccaattct
     8041 ccctgacgca attcattaat catcgacacc agttgccctt ccataatgcg tacttttacc
     8101 tgcggatgct gctgatgaaa acgagatatg acagctggca tcagactgcg ggaaatactg
     8161 gcccccatgc cgatattaat ctgccctgcc agttgccctt gtcgttggcg aatatcctct
     8221 tgggctgcgc gcagctcttc aagaataaga ctggcgtgct gataaaaact ttcaccggca
     8281 tcagttaacg tcacgccttt actacggcga aaaaagagtt gcgccgctaa tccttcttcc
     8341 aactcctgaa tagatttact cagtgccggt tgcgacatat tcaacattcg gctcgctccg
     8401 cgaatgctgc cctgacgagc cacttcaaca aaagcacgaa tttgatgaat ttttacctga
     8461 aaagccatga cgccaccgat aaccgttatt tatcagacca aagaaactgg catctacttt
     8521 aatgcagatg attgtgtcag ggtaatttat gaacggttaa aactgtgaaa aatcagttag
     8581 tgataagtaa aaactatcgc tacgtgaacc gggtcacact ttttactgat gacgggaaag
     8641 gttatggagt ctttgaatca atttgttaat tcgcttgccc caaaattatc gcactggcga
     8701 cgtgattttc atcactatgc agagtctggc tgggtggaat tccgcactgc cacccttgtt
     8761 gcggaagaat tgcagcagct cggctattca ctggcgctgg gccgcgaagt agttaatgaa
     8821 agtagccgga tgggactacc tgatgaactc actctacaac gcgaattcga gcgcgctcgt
     8881 caacagggtg cgctagcaca atggattgcg gtttttgaag gtggtttcac tggtatcgtc
     8941 gccaccctgg ataccggtcg ccccggtccg gtgatggctt tccgtgtcga tatggacgcg
     9001 ctggatctca gtgaagagca ggatgtcagc catcgcccct accgcgacgg ttttgcgtca
     9061 tgtaacgccg gaatgatgca tgcctgtggt catgatggac ataccgccat tgggcttggg
     9121 ctagcgcata cccttaaaca attcgagtcc ggactacatg gcgtcatcaa actgattttt
     9181 cagcctgcag aggaaggtac gcgtggcgcg cgggcgatgg tcgatgcagg tgtcgtagat
     9241 gatgttgatt attttactgc cgtgcacatt ggcactggcg tacctgcggg caccgtggtg
     9301 tgcggcagtg ataattttat ggcaaccacc aaatttgacg cgcacttcac cggtaccgcc
     9361 gctcacgcag gcgcaaaacc agaagacggt cacaatgcct tgttggcggc agcacaagcc
     9421 actcttgcac tgcatgcaat cgccccggag cttccagagt aaacgtgggc gttatgcagg
     9481 caggaagcgg tcgtaacgtt gttcctgcct cggcgttgct gaaagtggaa acacgcgggg
     9541 ccagcgacgt cattaatcaa tatgtttttg accgtgcaca acaagcgatt cagggcgcag
     9601 caaccatgta tggtgtcggc gttgaaactc gtctgatggg tgcagctacc gccagttctc
     9661 cttcgccgca atgggtcgca tggttgcaaa gtcaggcggc tcaggtcgcg gggggcaatc
     9721 aggccattga acgtgttgaa gcgcctgcgg gttccgaaga tgccacatta atgatggccc
     9781 gcgtgcagca acatcaaggg caagcctcct acgtggtgtt tggcacacag ctggcggcag
     9841 gtcatcacaa cgaaaaattc gattttgacg agcaggttct cgctattgcc gtcgaaacgc
     9901 tggcgcgcac cgcgctcaat tttccctgga cgcgaggtat ctgatgcagg aaatctatcg
     9961 ttttatcgac gatgcgattg aagccgatcg ccaacgttat accgatattg ccgatcaaat
    10021 ctgggatcat ccagaaacac gttttgaaga gttctggtca gcggagcatc tggcttcggc
    10081 gctggaatct gcaggcttca ccgttacccg caacgtaggc tatatcccaa atgcctttat
    10141 tgcttcgttt ggtcaaggca aaccggttat cgccctgctg ggagaatatg acgccctggc
    10201 aggtttaagt cagcaagcag gttgcgcgca acctacatcc gtgacgcccg gtgaaaatgg
    10261 tcacggttgc ggacacaatt tgctgggaac cgccgccttt gccgctgcaa tagccgtcaa
    10321 gaaatggctg gaacaatatg ggcaaggcgg cacggtgcgc ttttatggtt gtcctggcga
    10381 agaaggcggc tcgggtaaaa cgttcatggt tcgcgagggg gtatttgatg atgtggatgc
    10441 ggcactcact tggcacccgg aagcctttgc cggtatgttc aatacccgca cgctggcaaa
    10501 cattcaggca tcatggcgct ttaaagggat cgcagcacat gccgcgaatt tccctcattt
    10561 gggacgcagc gcccttgatg ccgtaacgtt gatgaccact ggcaccaact tcctcaacga
    10621 acatattatt gaaaaagcgc gcgtacacta tgccatcaca aatagcggcg ggatctcgcc
    10681 caacgtggtc caggcgcagg cagaagtgct ttatcttatc cgcgcccccg aaatgaccga
    10741 cgtgcagcat atttatgatc gggtcgccaa aatcgccgaa ggtgcggcat tgatgaccga
    10801 aaccacggtt gaatgccgct tcgacaaagc ctgttccagt tatctcccga atcgcacctt
    10861 agaaaatgcc atgtaccatg ccctatccca ttttggtacc ccggaatgga actccgaaga
    10921 actggctttt acgaaacaaa ttcaggctac gctccccccc aacgatcggc aaaacagtct
    10981 gaataatatc gccgcaaccg gtggcgaaaa cggcaaggct tttgcactac gtcatcgtga
    11041 aacggtactg gcgaatgagg tcgctccata tgccgccacc gataacgtgc ttgcggcatc
    11101 gactgatgtc ggcgacgtca gttggaaact gcctgttgcc cagtgtttca gcccctgttt
    11161 tgccgtcggt acaccgctac atacgtggca actggttagc caggggcgaa catctattgc
    11221 tcataaagga atgctgctgg cggcgaaaac tatggcagca accacactca atctcttcat
    11281 tgattcaggg ctattgcaag aatgccaaca agagcatcag caagttacgg acacgcaacc
    11341 gtatcactgc cctatcccaa aaaacgtgac actgtcatct ttaaaataac aacaacaacg
    11401 caaacacaac aaccgaggaa tgcccatgag tatgtcatcc ataccgtcgt cctcctaatc
    11461 cgggaagctc tatggctggg tcgaaagaat tggtaacaag gttccccatc cttttttgct
    11521 ctttatctat ttgattatcg tactcatggt gacgacggca attttgtcgg cctttggcgt
    11581 cagtgcgaaa aacccgaccg atggaacgcc ggtggtggtg aaaaacctgc tcagtgtgga
    11641 aggattacac tggtttttac ccaatgttat taaaaacttt agcggttttg ctccacttgg
    11701 tgcgatcctg gcgctggttt taggtgccgg tctggcggag cgcgtcggct tactgccagc
    11761 gctaatggtt aaaatggcat cgcatgttaa tgtccgctac gccagttata tggtgctgtt
    11821 tattgctttt ttcagccaca tttcttccga tgcggcgtta gtgatcatgc caccgatggg
    11881 tgcgctgatt tttctggcgg tgggcaggca tccagttgca ggtttactgg ctgccattgc
    11941 aggcgtaggt tgcggcttta cggctaattt actgattgtc acaaccgacg tgttgctgtc
    12001 ggggatccgc acggaagcgg cggctgcgtt caatccgcaa atgcacgtca gtgtaattga
    12061 taactggtat tttatggcca gctccgtagt cgtactgacg attgttggcg gcctgataac
    12121 cgacaaaatc atcgagccac ggttaggtca atggcaggga aacagcgatg agaaactgca
    12181 gacattgacc gaaagtcagc gttttggttt acgcatagca ggtgtcgtat cgctactttt
    12241 tattgctgcg atcgcgctga tggtgatccc ggaaaacggg atattgcgcg atccgattaa
    12301 tcacaccgtg atgccatcac cctttattaa aggtatcgtg ccactaatca ttcttttttt
    12361 ctttgtggtt tcgctggctt atggcatcgc tacccgcaca attcgacatc aggcggattt
    12421 accgcattta atgattgaac cgatgaaaga gatggcggga tttatcgtga tggtttttcc
    12481 cctcgcccag tttgtcgcca tgtttaactg gagcaacatg gggaaattca tcgccgtggg
    12541 gctgaccgat atactggaaa gttcagggct tagcggcatc ccggcgtttg tcggtctggc
    12601 gttgctttcc tctttcttat gcatgtttat tgccagtggt tccgcaatct ggtcgattct
    12661 ggcccccatt ttcgtaccaa tgtttatgct acttggcttt cacccggcat ttgcgcaaat
    12721 cctctttcgt attgccgact catccgtatt gcctttagcg ccggtatctc cttttgttcc
    12781 actgtttctt ggattcctgc aacgctacaa accagacgcg aaactgggta cttactattc
    12841 gttagtcttg ccctatccgc ttatcttttt ggtggtatgg ctgctgatgt tgctggcgtg
    12901 gtatcttgtt ggtctgccga taggtccggg gatttaccca cgtttgtctt aagagagaac
    12961 ggatgctgag attacttgaa gaaaaaattg ccacgccact gggtccactg tgggtgattt
    13021 gcgatgagca atttcgcctg cgggcggttg aatgggaaga gtacagcgaa cgcatggtgc
    13081 agctgctgga catccattat cgcaaagaag gctatgagcg catttctgcc accaacccag
    13141 gcggtttaag cgacaagctt agtgattatt ttgccggtaa tcttagcatt attgatacgc
    13201 ttcccactgc cacagggggg acgccatttc agcgcgaagt ctggaaaact ctacgcacta
    13261 tcccctgcgg gcaggtaatg cattacggcc aactggctga acaattgggc cgccctggcg
    13321 cggcgcgtgc cgttggtgcg gcaaacggat cgaatcccat cagcatcgtc gtaccttgcc
    13381 atcgggttat tggccgaaac ggcaccatga ccggatatgc aggcggagtt cagcgaaaag
    13441 agtggttatt gcgccacgaa ggttatcttt tgctgtaaac attaaacaat ttgtgccagc
    13501 ttgttcacac ttttatgtaa agttaccctt aacaacttaa tggttttcaa atagatagac
    13561 atatatttac atctaatatc ggaattctct gctgttaagg tttgcttaga cttacttgct
    13621 ccctaaaaag atgttaaaat tgacaaatat caattacggc ttgagcagac ctatgatccc
    13681 ggaaaagcga attatacggc gcattcagtc tggcggttgt gctatccatt gccaggattg
    13741 cagcatcagc cagctttgca tcccgttcac actcaacgaa catgagcttg atcagcttga
    13801 taatatcatt gagcggaaga agcctattca gaaaggccag acgctgttta aggctggtga
    13861 tgaacttaaa tcgctttatg ccatccgctc cggtacgatt aaaagttata ccatcactga
    13921 gcaaggcgac gagcaaatca ctggtttcca tttagctggc gacctggtgg gatttgacgc
    13981 catcggcagc ggccatcacc cgagcttcgc tcaggcgctg gaaacctcga tggtatgtga
    14041 aatcccgttc gaaacgctgg acgatttgtc cggtaaaatg ccgaatctgc gtcagcagat
    14101 gatgcgtctg atgagcggtg aaatcaaagg cgatcaggac atgatcctgc tgttgtcgaa
    14161 gaaaaatgcc gaggaacgtc tggctgcatt catctacaac ctgtcccgtc gttttgccca
    14221 acgcggcttc tcccctcgtg aattccgcct gacgatgact cgtggcgata tcggtaacta
    14281 tctgggcctg acggtagaaa ccatcagccg tctgctaggt cgcttccaga aaagcggtat
    14341 gctggcagtc aaaggtaaat acatcaccat cgaaaataac gatgcgctgg cccagcttgc
    14401 tggtcatacg cgtaatgttg cctgattttt ccgcataact cactatcctt ctgtcatatc
    14461 attaaatttt tctgatttat tgatctggca gaaggttcat cactgtttca ttcaccagat
    14521 atgggttaat cttttaatta caaactgcgt tgacagttgt tgtaaggaga ccctgtatgg
    14581 ctatgtatca gaacatgctc gttgttatcg atcctaacca ggacgaccaa ccagcattgc
    14641 ggcgagctgt ttatttacat caacggattg gtggcaaaat taaagccttt ttgccgatct
    14701 atgacttctc atacgaaatg accaccctgc tctccccgga cgaacgtacc gctatgcgtc
    14761 agggcgtcat cagccagcgt acagcctgga tccacgagca ggcaaaatat tatctcaatg
    14821 ctggcgttcc cattgaaatt aaagtggtct ggcataaccg tcctttcgaa gccatcattc
    14881 aggaagtgat cagcggcggg cacgatttgg tgctaaaaat ggcgcaccaa catgaccgtc
    14941 tggaagcggt gatttttacg ccaacggact ggcatctgtt acgcaaatgc ccaagcccgg
    15001 tgtggatggt gaaagaccag ccgtggccgg aaggaggtaa ggcgctggtg gcggtgaatc
    15061 tcgccagtga agagccgtat cataatgcgc tcaatgaaaa actggtcaaa gagacgatcg
    15121 aactggcaga acaagtcaac cataccgaag ttcatctggt tggcgcttac ccagtaacgc
    15181 caattaatat cgcgattgaa ctgccggaat ttgagccgag cgtttataac gatgccattc
    15241 gtgggcaaca tttgctggca atgaaagccc tgcggcagaa attcggcatt aatgaaaaca
    15301 tgacgcacgt agaaaaaggt ctgcccgaag aggttattcc tgatttggcg gagcacttac
    15361 aggcggggat tgtggttctg ggcacggtag gacgcaccgg tatttcagca gcattcctcg
    15421 gcaacacggc ggaacaggtg attgatcatc ttcgctgcga tctgttggtc attaaacctg
    15481 accagtatca gacacccgtt gaactggatg acgaagaaga cgattaacga ctcttcaata
    15541 actgacaagg cccgagttat cgggcctatt ttttacttac tgctcttcgc cgccaaggaa
    15601 ataaattccc aacgggattg ccagcaacac agtaaagacc aggctataaa caaaaatcat
    15661 cgatgactga atcacataca ttgatgtcgt ccactcagac agcggaatat tgtactgttc
    15721 tataacgccg ccgatagtcg cgcgagtcac aaccgacgcc gcaataatga caaaccgcca
    15781 acaaaccaaa gagaaatttc ttccctttcg ctgacttcag tttcgccata atcatgatgt
    15841 aatccttgtg cagacaaatt tcttgttacc taaacgtaac aataccatga catttcaccg
    15901 ttgtctgctc tgaaaacctc acctcttagc tggatttaca atcaacgcat tgattagtt
//
LOCUS       DAJVSY010000095        15701 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.095, whole genome shotgun sequence.
ACCESSION   DAJVSY010000095 DAJVSY010000000
VERSION     DAJVSY010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15701)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15701)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15701
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.095"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(1..127)
                     /locus_tag="OQQ19_002661"
                     /pseudo
     CDS             complement(1..127)
                     /locus_tag="OQQ19_002661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611997.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            404..496
                     /locus_tag="OQQ19_002662"
                     /pseudo
     CDS             404..496
                     /locus_tag="OQQ19_002662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004120448.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
     gene            500..679
                     /locus_tag="OQQ19_002663"
                     /pseudo
     CDS             500..679
                     /locus_tag="OQQ19_002663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310134.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
     gene            1013..3292
                     /gene="ydeP"
                     /locus_tag="OQQ19_002664"
     CDS             1013..3292
                     /gene="ydeP"
                     /locus_tag="OQQ19_002664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance putative oxidoreductase YdeP"
                     /protein_id="HCS1804230.1"
                     /translation="MKKKIESYQGAAGGWGAVKSVANAVRKQMDIRQDVIAMFDMNKP
                     EGFDCPGCAWPDPKHTASFDICENGAKAIAWEVTDKQVNASFFAENTVQSLLTWGDHE
                     LEAAGRLTQPLKYDAVSDCYKPLSWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAA
                     FLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFEKCDLVICIGHN
                     PGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYY
                     NVRIGGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDVLNSEW
                     KDIEHISGLSQTQIAELADAYAAADRTIICYGMGITQHEHGTQNVQQLVNLLLMKGNI
                     GKPGAGICPLRGHSNVQGDRTVGITEKPSAEFLARLGERYGFTPPHAPGHAAIASMQA
                     ICTGQARALICMGGNFALAMPDREASAVPLTQLDLAVHVATKLNRSHLLTARHSYILP
                     VLGRSEIDMQKSGAQAVTVEDSMSMIHASRGVLKPAGVMLKSECAVVAGIAQAALPQS
                     VVAWEYLVEDYDRIRNDIEAVLPEFADYNQRIRHPGGFHLINAAAERRWMTPSGKANF
                     ITSKGLLEDPSSAFNSKLVMATVRSHDQYNTTIYGMDDRYRGVFGQRDVVFMSAKQAK
                     ICRVKNGERVNLIALTPDGKRSSRRMDRLKVVIYPMADRSLVTYFPESNHMLTLDNHD
                     PLSGIPGYKSIPVELEPSN"
     gene            3540..3737
                     /gene="safA"
                     /locus_tag="OQQ19_002665"
     CDS             3540..3737
                     /gene="safA"
                     /locus_tag="OQQ19_002665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system connector SafA"
                     /protein_id="HCS1804231.1"
                     /translation="MHATTVKNKITQRDNYKEIMSVIVVVLLLTLTLIAIFSAIDQLG
                     ISEMGRIARDLTHFIINSLQD"
     gene            3812..4573
                     /gene="ydeO"
                     /locus_tag="OQQ19_002666"
     CDS             3812..4573
                     /gene="ydeO"
                     /locus_tag="OQQ19_002666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid stress response transcriptional regulator
                     YdeO"
                     /protein_id="HCS1804232.1"
                     /translation="MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY
                     ERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERN
                     HHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCL
                     YISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYA
                     FRKHFGNSPKRVSKEYRCQSHTGMNTGNTMSALAI"
     gene            4975..6657
                     /locus_tag="OQQ19_002667"
     CDS             4975..6657
                     /locus_tag="OQQ19_002667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416015.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase"
                     /protein_id="HCS1804233.1"
                     /translation="MKSALKKSVVSTSISLILASGMAAFAAHAADDVKLKATKTNVAF
                     SDFTPTEYSTKGKPNIIVLTMDDLGYGQLPFDKGSFDPKTMENREVVDTYKIGIDKAI
                     EAAQKSTPTLLSLMDEGVRFTNGYVAHGVSGPSRAAIMTGRAPARFGVYSNTDAQDGI
                     PLTETFLPELFQNHGYYTAAVGKWHLSKISNVPVPEDKQTRDYHDNFTTFSAEEWQPQ
                     NRGFDYFMGFHAAGTAYYNSPSLFKNRERVPAKGYISDQLTDEAIGVVDRAKTLDQPF
                     MLYLAYNAPHLPNDNPAPDQYQKQFNTGSQTADNYYASVYSVDQGVKRILEQLKKNGQ
                     YDNTIILFTSDNGAVIDGPLPLNGAQKGYKSQTYPGGTHTPMFMWWKGKLQPGNYDKL
                     ISAMDFYPTALDAADISIPKDLKLDGVSLLPWLQDKKQGEPHKNLTWITSYSHWFDEE
                     NIPFWDNYHKFVRHQSDDYPHNPNTEDLSQFSYTVRNNDYSLVYTVENNQLGLYNLTD
                     LQQKDNLAAANPQVVKEMQGVVREFIDSSQPPLSEVNQEKFNNIKKALSEAK"
     gene            6709..7866
                     /locus_tag="OQQ19_002668"
     CDS             6709..7866
                     /locus_tag="OQQ19_002668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416014.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HCS1804234.1"
                     /translation="MHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIK
                     QYIAASGNQVYFTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEW
                     CSFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVI
                     NNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAY
                     GKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIY
                     ECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRISAKCQQCAYKPICNGGCPKHRIT
                     KVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN"
     gene            complement(7832..7954)
                     /locus_tag="OQQ19_002669"
     CDS             complement(7832..7954)
                     /locus_tag="OQQ19_002669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804235.1"
                     /translation="MTKHPTGIYVGCLVKVIRRRLRMELKESVINYSPFVLQHP"
     gene            8163..9848
                     /locus_tag="OQQ19_002670"
     CDS             8163..9848
                     /locus_tag="OQQ19_002670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HCS1804236.1"
                     /translation="MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILG
                     VVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPALLGIFVLISVNKTWLIKLLTIR
                     WREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQ
                     SLSMLITFTVILWQSAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRP
                     LNVEKQRSEATFRTNLVQHNKQAELIALSNAESLQRQELRDNFHTIKENWHRLMNRQR
                     LLDYWQNIYSRSLSVLPYFLLLPQFISGKINLGGLMKSRQAFMLVSNNLSWFIYKYDE
                     LAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVANASIRTPDNKIILENLNFHVSP
                     GKWLLLKGYSGAGKTTLLKTLSHCWPWFKGDIFSPADSWYVSQTPLIKTGLLKEIICK
                     ALPLPVDDKSLSEVLHQVGLGKLAARIHDHDRWGDILSSGEKQRIALARLILRRPKWI
                     FLDETTSHLEEQEAIRLLRLVREKLPTSGVIMVTHQPGVWNLADDICDISAVL"
     gene            9886..12258
                     /locus_tag="OQQ19_002671"
     CDS             9886..12258
                     /locus_tag="OQQ19_002671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HCS1804237.1"
                     /translation="MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVN
                     GNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPY
                     QNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
                     RFNGGVIDAKIKRFNADDSKVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYFSPD
                     FKKNFYTLSFNQELADNFGVTAGLSRRQSDITRADYVSNDGIVVGRAQYKNVIDTALS
                     KFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLR
                     TTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQ
                     KFAVGDVSHQPYSGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDN
                     YTLYMADHISWRNVSLMPGVRYDYDNYLSNHNISPRFMTEWDIFADQTSMITAGYNRY
                     YGGNILDMGLRDIRNSWTESVSGNKTLTRYQNLKTPYNDELAMGLQQKIGKNVIARAN
                     YVYREAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHIRQVDINPQ
                     IVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFT
                     HQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDYKQYVDEKLDSSLTWDTRLSW
                     TPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF"
     gene            12315..15098
                     /locus_tag="OQQ19_002672"
     CDS             12315..15098
                     /locus_tag="OQQ19_002672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310126.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HCS1804238.1"
                     /translation="MRNLCFLLTLVATLLLPGRLIAAALPQDEKLITGQLDNGLRYMI
                     YPHAQPKDQVNLWLQIHTGSLQEEDNERGVAHFVEHMMFNGTKTWPGNKVIETFESMG
                     LRFGRDVNAYTSYDETVYQVSLPTTQKQNLQQVMAIFSEWSNAATFEKLEVDAERGVI
                     TEEWRAHQDAKWRTSQARRPFLLANTRNLDREPIGLMDTVATVTPAQLRQFYQRWYQP
                     NNMTFIVVGDIDSKKALALIKDNLSKLPANKAAENRVWPTKAENHLRFNIINDKENRV
                     NGIALYYRLPMVQVNDEQSFIEQAEWSMLVQLFNQRLQERIQSGELKTISGGTARSVK
                     IAPDYQSLFFRVNARDDNMQDAANALMAELATIDQHGFSAEELDDVKSTRLTWLKNAV
                     DQQAERDLRMLTSRLASSSLNNTPFLSPEETYQLSKRLWQQITVQSLAEKWQQLRKNQ
                     DAFWEQMVNNELAAKKALSPAAILALEKEYANKKLAAYIFPGRNLSLTVDADPQAEIS
                     SKETLAENLTSLTLSNGARVILAKSAGEEQKLQITAVSNKGDLSFPAQQKSLIALANK
                     AVSGSGVGELSSSSLKRWSAENSVTMSSKVSGMNTLLSVSARTNNPEPGFQLINQRIT
                     HSTINDNIWASLQNAQIQALKTLDQRPAEKFAQQMYETRYADDRTKLLQENQIVQFTA
                     ADALAADRQLFSSPADITFVIVGNVSEDKLVALITRYLGSIKHSDSPLAAGKPLTRAT
                     DNASVTVKEQNEPVAQVSQWKRYDSRTPVNLATRMALDAFNVALAKDLRVNIREQASG
                     AYSVSSRLSVDPQAKDISHLLAFTCQPERHDELLTLANEVMVKRLAKGISEQELNEYQ
                     QNVQRSLDIQQRSVQQLANTIVNSLIQYDDPAAWTEQEQLLKQMTVENVNTAVKQYLS
                     HPVNTYTGVLLPK"
     gene            15460..>15701
                     /locus_tag="OQQ19_002673"
     CDS             15460..>15701
                     /locus_tag="OQQ19_002673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HCS1804239.1"
                     /translation="MDKKQVTDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQ
                     IINDELYLDGNARQNLATFCQTWDDENVHKLMDLSI"
BASE COUNT         4567 a         3421 c         3443 g         4270 t
ORIGIN      
        1 tttcagattc cagttcagcc accgtgcggg aaccaggagt accgagccct tttctggcgg
       61 cggtaaccca ttgtcctaaa gtgccttcag gaagggataa tcgggaagca tggacggtta
      121 agccgagaat acggtagtaa gtgagatatg gggtttggtc gttgttaatg agcaaccatg
      181 accgccaacg actgggttct cccttggttt atgttggtgc gcataatgta tattatgtta
      241 aatcatatct gagtgatgcg aagtgctttt ctggtagtcg ttattcgttc agggttccag
      301 aacttaagcc tctcctcttt cataattggc ctgtgcatga cggatatagg ctggctggta
      361 tgcagatttg ccgtttgccg catcttccca gcgttgaaga ctcaagctgg caaaccgcgt
      421 gcaaatgagc acgccctctt tccatcaaca cttcaggcag cttgcgggaa tgagtccact
      481 acggtatcag aaatgggaag tgggtgtctc tctgatgcgt aatggaaaaa tactggctac
      541 gggagaaaat gtctccctgg ggacagtaaa taaaagcaaa gtatctctgg gtttaagcgc
      601 aacctatgga caaacaggaa acaaggttgc agccggaacc gtccagtcag tcattggtgt
      661 cacttttatc tatgaataat tgtgattttg atcttagtct atgcgctcca ttcacgaaaa
      721 ttgcgcggat aattattttg tgaaggctat tatcctacac ctgtaagaaa atccgcgcac
      781 aattgaagcc agagtcttat tttttatatt gaaaaatatg ttaatttaaa cactatgaga
      841 gatgatgctt aacttatcgt atttaatcta ttgtttaacg ataatagatt aaaaatagaa
      901 agagagtagt cccctactct tatatatcca tgttggcgat aatccctttg tatgtactgt
      961 gcatcatcgc tattacaaat cctaataatt catttccaca caggataagt agatgaagaa
     1021 aaaaattgaa tcctaccagg gtgctgcagg tggttggggt gctgttaaat ccgtagcgaa
     1081 tgcagtacgt aagcagatgg atatacgcca ggatgttatt gccatgtttg acatgaataa
     1141 gccagagggc tttgactgtc cgggttgtgc atggccagat cctaagcaca ctgcgtcatt
     1201 cgacatttgt gaaaacggcg caaaagcaat cgcctgggaa gtcacggata agcaggtaaa
     1261 tgcctctttc tttgctgaga atacggttca atcattactt acctggggag atcacgagct
     1321 tgaggctgcg ggacgtctca ctcagccttt gaaatatgat gccgtcagcg actgttacaa
     1381 gccattaagc tggcaacaag ctttcgacga aattggcgca cgccttcaaa gctatagtga
     1441 tcccaatcag gttgaattct atacttcggg ccgcacttcc aatgaagctg cctttcttta
     1501 tcagcttttt gcccgtgaat acgggagcaa taactttccc gactgctcca acatgtgcca
     1561 tgaaccgacc agtgtgggtt tggcagcgag tatcggcgtg ggtaaaggga ctgtgttgct
     1621 ggaagacttt gagaagtgcg atttagtcat ttgcattggg cataaccctg gtacaaacca
     1681 cccccgcatg ctgacttcgt tgcgcgcttt agtgaaacgg ggagcgaaaa tgatcgccat
     1741 caatccttta caggaacgtg gcctggagcg atttaccgca ccgcaaaacc cgtttgaaat
     1801 gctgacgaac tctgagactc agttggccag tgcgtactac aacgtgcgca ttggtggcga
     1861 tatggcgttg ctcaagggga tgatgcgcct gttaattgag cgcgatgatg ctgcaagtgc
     1921 cgcaggtcgg ccctcattgc ttgatgacga atttattcaa acgcataccg tcggctttga
     1981 cgagctacgc cgtgacgttc tcaattccga gtggaaagat atcgaacata tttctggact
     2041 aagtcagaca caaatcgccg aactggctga cgcatatgcc gctgccgatc gcaccattat
     2101 ctgttacgga atggggatca ctcagcacga acatggtacc cagaatgtac agcaactggt
     2161 caatctgctg ttgatgaaag gtaacattgg caagcctggt gcgggtatct gcccactacg
     2221 aggtcactct aatgtacagg gcgaccgaac cgtcggtatc accgagaaac cgtctgcaga
     2281 gtttctggct cgcctgggtg agcgctatgg cttcacccca cctcatgcac ctggacatgc
     2341 tgcaattgcc agcatgcaag caatatgcac ggggcaggct cgagcattga tctgcatggg
     2401 gggcaacttt gcactggcaa tgccagatcg ggaagcgagc gctgtaccgt taacgcaatt
     2461 agatttggcg gtacacgtag ccactaagct taaccgctct catctgctga ccgcacggca
     2521 tagctatatt ctgccggttc tggggcgtag cgagattgac atgcaaaaaa gcggtgcgca
     2581 ggcggtaacc gttgaggatt caatgtcgat gattcatgcc tcgcgtggcg tgttaaaacc
     2641 cgccggtgta atgctgaaat cagagtgtgc agtggtcgcg ggaatcgcgc aggcagcact
     2701 accccagagc gtggtagcct gggagtatct ggtggaagat tatgatcgca ttcgcaatga
     2761 cattgaagct gtgttaccag agttcgccga ctataaccag cgcatccgac atcctggagg
     2821 ttttcacctg ataaatgcag ctgctgaaag gcgctggatg acgccgtcag gtaaggctaa
     2881 tttcattacc agcaaagggc tgttagaaga tccctcttca gcgtttaaca gtaagctggt
     2941 catggcgaca gtacgcagcc acgatcagta caacacgacg atttatggta tggatgatcg
     3001 ctatcgaggg gtattcggtc aacgagatgt ggtctttatg agtgctaaac aagctaaaat
     3061 ttgccgtgta aaaaacggcg aaagagttaa tcttattgcg cttacgccag acggtaagcg
     3121 cagctcacgc cgcatggata gattaaaagt ggtcatttac cctatggctg accgctcact
     3181 ggtgacctat tttccagaat cgaatcacat gctaactctt gataaccacg atccattaag
     3241 tggcattcct ggttataaaa gtattccggt tgaattagaa ccatcaaatt aattcgcctc
     3301 ctcatttctt ctgctgtcat ccgcacagca gaagaatttc tcattgacta ttatcgcgca
     3361 atttgctcac attgatcaaa ttaaaccaca cactataaga tataaacctc tgcctacagc
     3421 tgtaagaaac tccgctcagt actgaagtgc cagtcctatt tcctcttttc tccagcctgt
     3481 tatattaagc atactgatta acaattttta acgttatccg ctaaataaac atatttgaaa
     3541 tgcatgcgac cacagtgaaa aacaaaatca cgcaaagaga caactataaa gaaatcatgt
     3601 ctgtaattgt ggttgtctta ttactgaccc ttacgttgat agccattttt tcggcaattg
     3661 atcagctggg tatttcagaa atgggtcgca ttgcaagaga tcttacacat ttcattatca
     3721 atagtttgca agactgaaaa taaacagcaa attataaata tgaaatgtta aaaaagtatc
     3781 gataaaaact ttattgtttt aaggagataa aatgtcgctc gtttgttctg ttatatttat
     3841 tcatcatgcc ttcaacgcta acattttaga taaagattac gccttctctg acggcgagat
     3901 cctgatggta gataacgctg ttcgtacgca ttttgaacct tatgagcggc attttaaaga
     3961 gatcggattt actgaaaata ccattaaaaa atatctacaa tgcactaaca tccagacagt
     4021 gacggtgcct gttcctgcga agtttttacg tgcttcaaat gtaccgactg gattgcttaa
     4081 tgaaatgatt gcttatctca actcggaaga acgcaatcat cataattttt cagaactttt
     4141 gcttttttct tgcctgtcta tttttgccgc atgcaaaggt ttcattacac tattaactaa
     4201 cggtgtgcta tccgtttccg gaaaagtgag aaatattgtc aacatgaagc tggcgcaccc
     4261 atggaagctg aaagatattt gtgactgcct gtacatcagt gaaagcctgt tgaagaaaaa
     4321 actaaagcaa gagcaaacga cattctcaca gattctatta gatgccagaa tgcagcacgc
     4381 aaaaaatttg atacgcgtag aaggttcagt caataaaatt gccgaacaat gtggttatgc
     4441 cagtacttct tattttattt atgcgttccg caaacatttc ggcaacagtc cgaagagagt
     4501 ttctaaggag taccgttgtc aaagtcacac gggtatgaat acgggcaaca cgatgagtgc
     4561 tttagctatt tgattatttg ctaacgagta gtcaaccacg cacgctacgt aagaattata
     4621 tggggcagcc attccctgcc ccgcgttgtt tttaggcgat atatttattg aaataaataa
     4681 gtgacatcca tcacatattt atgcacttgc ataacctgtt gcatgattat ttatgttctc
     4741 aattcagcat tttgtcagta aaatgcaata attcattaaa tatcaataaa ttagttgttt
     4801 atcggcgaga aattacttaa tagaacagaa agtaatgtca acgctttatg gactgttatt
     4861 tccctttttt tagctaaatc tgctatctct ttatgtgact aacttcactt acatccactt
     4921 atttctcttc gtaaaattac ttcggaatta agtacaataa gaagaggaac atttatgaag
     4981 tctgcattaa agaaaagtgt cgtaagtacc tcgatatctt tgatactggc atctggtatg
     5041 gctgcatttg ctgctcatgc ggcagatgat gtaaagctga aagcaaccaa aacaaacgtt
     5101 gctttctcag actttacgcc gactgaatac agtaccaaag gaaagccaaa tattatcgta
     5161 ctaaccatgg atgatcttgg ttatggacaa cttccttttg ataagggatc ttttgaccca
     5221 aaaacaatgg aaaatcgtga agttgtcgat acctacaaaa tagggataga taaagccatt
     5281 gaagctgcac aaaaatcaac gccgacgctc ctttcattaa tggatgaagg cgtacgtttt
     5341 actaacggct atgtggcaca cggtgtttcc ggcccctccc gtgccgcaat aatgaccggt
     5401 cgagctcccg cccgctttgg tgtctattcc aataccgatg ctcaggatgg tattccgcta
     5461 acagaaactt tcttgcctga attattccag aatcatggtt attacactgc agcagtaggt
     5521 aaatggcact tgtcaaaaat cagtaatgtg ccggtaccgg aagataaaca aacgcgtgac
     5581 tatcatgaca acttcaccac attttctgcg gaagaatggc aacctcaaaa ccgtggcttt
     5641 gattacttta tgggattcca cgctgcagga acggcatatt acaactcccc ttcactgttc
     5701 aaaaatcgtg aacgtgtccc cgcaaaaggt tatatcagcg atcagttaac cgatgaggca
     5761 attggcgttg ttgatcgtgc caaaacactt gaccagcctt ttatgcttta cctggcttat
     5821 aatgctccgc acctgccaaa tgataatcct gcaccggatc aatatcagaa gcaatttaat
     5881 accggtagtc aaacagcaga taactactac gcttccgttt attctgttga tcagggtgta
     5941 aaacgcattc tcgaacaact gaagaaaaac ggacagtatg ataatactat tattctcttt
     6001 acctccgata atggtgcggt tatcgatggt cctctgccgc tgaacggggc gcaaaaaggc
     6061 tataagagtc agacctatcc tggcggtact cacaccccaa tgtttatgtg gtggaaagga
     6121 aaacttcaac ccggtaatta tgacaagctg atttccgcaa tggatttcta cccgacagct
     6181 cttgatgcag ccgatatcag cattccaaaa gaccttaagc tggatggcgt ttccttgctg
     6241 ccctggttgc aagataagaa acaaggcgag ccacataaaa atctgacctg gataacctct
     6301 tattctcact ggtttgacga ggaaaatatt ccattctggg ataattacca caaatttgtt
     6361 cgccatcagt cagacgatta cccgcataac cccaacactg aggacttaag ccaattctct
     6421 tatacggtga gaaataacga ttattcgctt gtctatacag tagaaaacaa tcagttaggt
     6481 ctctacaatc tgacggatct acagcaaaaa gataaccttg ccgccgccaa tccgcaggtc
     6541 gttaaagaga tgcaaggcgt ggtaagagag tttatcgaca gcagccagcc accgcttagc
     6601 gaggtaaatc aggagaagtt taacaatatc aagaaagcac taagcgaagc gaaataacta
     6661 aaccttcatg cggcggaatt ttccgccgcc ttattgagcg agatagcgat gcacgttaca
     6721 gccaagccct ccagttttca atgtaatctc aaatgtgatt actgttttta ccttgaaaaa
     6781 gagtcgcagt ttactcatga aaaatggatg gatgacagca ctctgaaaga gttcatcaaa
     6841 caatatatcg cagcgtctgg caatcaggtc tattttacct ggcaaggcgg tgaacccact
     6901 ctggctggcc tggatttttt ccgtaaagtt attcactatc aacaacgcta tgcaggccaa
     6961 aaacgtattt ttaatgcatt acaaacgaat ggcattttat tgaataacga atggtgttcc
     7021 tttctcaaag aacatgaatt tctggttggt atctcgatcg atggccccca ggagttacat
     7081 gaccgttaca gacgcagtaa ttcaggtaac ggtacttttg caaaagtgat agcagccatc
     7141 gagcgtctga aatcatatca agttgagttt aatacgttaa ccgtcattaa taacgttaat
     7201 gtccattacc ctcttgaggt ttatcatttt ttaaaatcta tcggcagtaa acatatgcaa
     7261 tttatcgaat tgctcgaaac cgggacgccg aatattgatt tcagtggtca tagtgagaac
     7321 acattccgta tcattgattt ttctgtgcct cccacggctt atggcaagtt tatgtcaacc
     7381 atttttatgc aatgggttaa aaacgatgtg ggtgaaattt tcattcgtca gtttgaaagc
     7441 tttgtcagcc gttttttggg gaatgggcat acaagttgta ttttccagga gtcctgcaag
     7501 gataatctgg ttgttgaaag taatggagac atttacgaat gcgaccattt tgtctatcca
     7561 cagtacaaaa ttggaaacat taataaatct gaactcaaaa cgatgaacag tgtacaactg
     7621 acagcgcaaa aaaaacggat ttcagcgaaa tgtcagcaat gtgcatataa acctatctgc
     7681 aatggcggtt gtcctaagca tcgtattact aaagtaaaca atgagactgt ttcttatttt
     7741 tgcgaaggtt ataaaatcct tttttcaacc atggtacctt atatgaacgc catggttgag
     7801 ttagctaaga acagagtacc gctttaccac attatggatg ttgcaaaaca aatggagaat
     7861 aattaataac gctctctttt aactccattc ttagcctcct tcttatgacc ttaacaaggc
     7921 acccgacata aattcctgtc gggtgtttcg tcatcatcat cttcccttgc gaaaatcctg
     7981 gcttacgtgg tatgcgtcag ggcattagca atacccttga ttatcaatag cataaccata
     8041 accataacca ctgaaaatta aaaatttcta tatatttcat attgttaaat gatacttaaa
     8101 taaatttcat cagtaaatca ttgccataga taatcattgg atggcacaat caattttcgc
     8161 taatgataac cattcccatt acgttttgta tgttgatagc aaagtatctc tgtctgctga
     8221 agcccttttg gctgcgtaag aataataaaa cttcagtgtt gttaatcatt attatcctcg
     8281 caatgatcct tggcgtggtt aaaattcagg tctggttaaa cgactggaat aatgattttt
     8341 tcaatgcgct aagccagaaa gaaaccgata agctttggca gcttgttctt tggttccctg
     8401 ccctgctggg gatctttgta ttaatatccg taaacaaaac atggttaatt aaactactga
     8461 ctattcgctg gcgcgaatgg ttaacagatt actaccttaa tcgctggttt gcagataaaa
     8521 actactactt cacgcagatc tacggcgagc ataaaaatac agataaccct gaccaacgta
     8581 tcgctgaaga cattctctta ctgatcagca aaacgctcag tctttcattt ggcttcatcc
     8641 agtcacttag catgctgatc acctttaccg ttattctttg gcaaagcgcg ggtacgctct
     8701 cattcactgt tggtggaaca gaatggaata tccaggggta tatggtctat accgtcgtgc
     8761 tcattgtgat cggtggaact ttatttaccc ataaggttgg taagcgtatt cgtccgctta
     8821 atgtggaaaa acaacgtagc gaagcgacat ttcgaactaa tcttgtgcag cataataagc
     8881 aggcagaact gattgcgcta agcaatgctg agtctctaca acgccaggag ttgcgcgaca
     8941 attttcatac cattaaagag aactggcatc gtttaatgaa tcgtcagcgg ttgcttgatt
     9001 actggcaaaa tatttattcg cgctcgctta gcgttcttcc ctactttctg ttattgccgc
     9061 agtttattag cgggaagatc aatctgggcg gactgatgaa atcgcgccag gcatttatgc
     9121 tagtatcgaa caatttaagc tggtttattt ataaatatga cgaacttgct gaactggctg
     9181 cggttatcga tcgcttgtat gagttccatc aactcactga acagcgccct acgaataagc
     9241 ctaaaaattg ccaacatgcg gtacaagtgg ctaatgcgag tattcgtacg cctgataata
     9301 agatcatatt agagaacttg aactttcatg tttcgccagg caaatggcta ttactgaaag
     9361 gctactctgg tgcgggaaaa accacactgc ttaaaacatt atcccactgc tggccgtggt
     9421 ttaaaggtga tattttttct cctgctgaca gttggtatgt gtcacaaaca ccgttaatca
     9481 aaaccggctt actgaaagag attatttgta aagcacttcc cctgcccgta gacgataaat
     9541 cgttgagcga agtactgcat caggttggtc ttgggaaatt ggctgcgcgt attcatgacc
     9601 acgatcgctg gggagatatt ctttccagcg gcgaaaaaca acgtatcgcc ctggcacgat
     9661 taattttacg acgtccgaaa tggatatttc ttgacgaaac tacctctcat cttgaggaac
     9721 aagaggctat ccgcttactg cgtttagtgc gtgaaaaact acccacaagc ggcgtcatta
     9781 tggttacaca tcaacccggt gtctggaacc tggccgatga tatttgtgac attagcgcgg
     9841 ttttataaaa acaataaaag ccctgctgta cggagatata aataaatgaa gcgagttctt
     9901 attcctggcg tcattttatg tggcgctgat gtggcgcagg ccgtcgatga caaaaacatg
     9961 tacatgcatt tttttgaaga gatgacggtc tatgctcctg tccctgtacc cgtaaacggc
    10021 aacacgcatt acaccagtga aagcatcgag cgtttaccga ccgggaatgg caatatcagc
    10081 gatctgctga gaaccaaccc tgcggtacgc atggattcaa cgcaaagtac ctcgttgaac
    10141 cagggagata ttcgccctga gaaaatctct attcacggtg cgtcgcccta ccagaatgcc
    10201 tatttgattg acggtattag tgcaactaat aacctgaacc cagcgaatga gtccgatgcc
    10261 agtagtgcaa ccaatattag cgggatgtca caggggtatt atcttgatgt cagcttactg
    10321 gacaatgtga cgctttatga cagttttgtg ccggttgaat ttggtcgctt caatggcggg
    10381 gtaattgatg caaagatcaa acgcttcaac gctgatgata gcaaggtgaa attgggttat
    10441 cgcactacgc gttcggactg gttaacatcg catatcgatg agaataacaa gagcgcattt
    10501 aatcaaggtt cttcaggaag tacttatttc tctccagatt ttaaaaagaa cttttatacc
    10561 ttgtcgttta atcaggagct ggctgataac tttggcgtta ccgccggttt atcgcgccgc
    10621 cagtctgata tcacccgcgc ggattatgtt tcgaatgacg gcattgtcgt cggtcgggca
    10681 cagtataaaa acgttatcga tactgcattg agcaaattta cctggtttgc cagcgaccgc
    10741 tttacccacg atttaacctt aaaatatacc ggctccagcc gtgattataa taccagcacc
    10801 ttcccgcagt ctgatcgcga aatgggtaat aaatcctatg gtcttgcatg ggatatggat
    10861 acgcaactcg catgggccaa actacgtacc accgttggtt gggatcatat tagtgattat
    10921 acccgtcacg atcatgacat ctggtacacc gaactttcat gtacatatgg tgatattaca
    10981 gggcgttgta cccgtggcgg attaggacac atttcccagg ctgtagataa ttacaccttc
    11041 aaaacacgcc tggactggca aaaattcgcc gtgggtgatg tttcgcatca accctactcc
    11101 ggcgcggaat acatctattc cgatgcatgg actgaacgcc ataaccagtc tgaatcctat
    11161 gtgattaatg ctgcaggaaa gaaaactaac cataccattt accataaagg taaaggcagc
    11221 ctaggaattg acaactacac gctgtatatg gcggatcaca ttagctggcg gaatgtgtcg
    11281 ttaatgcccg gtgtgcgtta tgactatgac aactatctgt caaaccacaa tatctccccg
    11341 cgctttatga cggaatggga tatttttgct gatcaaacct caatgattac cgccggttat
    11401 aaccgttact atggcgggaa tattcttgat atgggattac gtgatatccg caatagctgg
    11461 acggaatcgg tatcaggtaa taaaaccctg acgcgttatc agaatttgaa aacgccttat
    11521 aacgatgaac tggcaatggg attgcagcaa aaaatcggta agaacgttat tgcacgcgca
    11581 aactatgttt accgtgaagc gcatgatcaa atcagcaaaa gcagtcgtac cgacagcgcg
    11641 actaaaacca ccattactga atataacaac gatggcaaaa ccaaaacgca ttcgtttaac
    11701 ctcagttttg aactggccga acccctgcat atccgccagg tagatattaa cccgcaaatt
    11761 gtctttagct atatcaagag caagggcaac ttgtcgttaa acaatggtta tgaggagagc
    11821 aataccggtg ataaccaggt ggtttataac ggtaatctgg tctcttacga tagcgttcca
    11881 gtggcagatt ttaataaccc attaaagatc tccttaaaca tggatttcac gcatcaaccg
    11941 agcgggttag tgtgggcgaa tacgctggcg tggcaagaag cgcgtaaagc tcgcattatc
    12001 cttggtaaga caaatgcgca atacatcagc gaatattcag attacaagca gtatgttgac
    12061 gaaaaactgg atagcagcct gacctgggac acccgcttgt cctggacgcc acaatttctg
    12121 aaacaacaaa acctgacgat cagtgccgat attctcaatg tactggatag caaaaccgct
    12181 gttgatacaa cgaataccgg tgtggcgacc tacgccagtg gccgtacttt ctggcttgat
    12241 gtcagcatga aattttaata gttcggattt tacttaaccg ggtaaattcg cccggttttc
    12301 gcatggagat aattatgaga aacctctgtt tcttactgac gttagtggca actctgttgc
    12361 tccccgggcg gctgattgcc gccgccttac cgcaggatga aaagttaatt accgggcaac
    12421 tggacaatgg cttgcgatat atgatttatc cgcatgctca accaaaggat caggtaaatt
    12481 tatggctgca aattcatacc ggttcattgc aggaagaaga caatgagcgc ggcgtggctc
    12541 attttgtaga acatatgatg tttaacggca caaaaacatg gccgggtaat aaagtcatcg
    12601 aaacatttga gtcaatgggc ctgcgttttg gtcgcgatgt taatgcctat accagctatg
    12661 acgaaacggt gtatcaggtg agtttgccga ctacgcagaa acaaaatctg caacaagtga
    12721 tggcaatctt cagtgaatgg agtaatgccg caacctttga aaaactcgaa gtagacgctg
    12781 aacgtggcgt aattactgag gaatggcgtg cccatcagga tgcgaaatgg cgcacctctc
    12841 aggcgcgccg ccctttcctg ctggctaata cccgtaattt agaccgtgaa cctatcggcc
    12901 tgatggatac tgtcgccacg gtcacaccgg cacaattgcg ccaattttat caacgctggt
    12961 atcaaccaaa taatatgacc tttatcgtgg tcggcgatat cgacagtaaa aaagcgctgg
    13021 cgctgataaa ggataattta agtaagcttc cggctaacaa agcagctgaa aatcgcgtct
    13081 ggccgacaaa agccgaaaac cacctgcgct ttaatatcat taatgataaa gaaaaccggg
    13141 tgaacggcat cgcactctat tatcgcctgc caatggtaca agtgaacgat gagcaaagct
    13201 ttatcgaaca agctgaatgg agcatgttag ttcagctgtt caatcaacgt ctgcaggaac
    13261 gcatacagtc gggcgagttg aagactattt ctggcggcac tgcgcgcagc gttaaaattg
    13321 cacccgatta tcagtcgctg tttttccgtg taaatgcacg agacgataat atgcaggatg
    13381 ctgcgaatgc attaatggca gagttggcaa ccattgatca gcatggtttt tctgctgaag
    13441 aactcgatga tgtcaaatct acccgcctca cctggctgaa aaatgcggtt gatcagcaag
    13501 ctgaacgtga tttacgtatg ctgaccagtc gcctggcatc cagctcatta aataatacgc
    13561 cgttcttgtc gccggaagag acatatcaac tttcgaaacg tctgtggcag caaattaccg
    13621 tgcaaagtct ggcggaaaaa tggcagcagt taagaaagaa ccaggacgca ttttgggagc
    13681 aaatggtaaa caatgagctt gccgccaaaa aagcattgtc tcctgcggct atcctggcgc
    13741 tggaaaaaga gtacgccaac aaaaagctgg cggcttacat cttcccaggc agaaatttat
    13801 cgttaacagt agacgctgac ccacaggcgg aaattagcag caaagaaacg ctggctgaga
    13861 atctgacatc attaacactt tccaatggtg ccagggttat tctggcaaaa tccgcgggtg
    13921 aagagcaaaa gctacaaatt actgccgtat cgaataaagg cgatttaagt ttccctgcgc
    13981 agcaaaaatc acttatcgcg ctggcaaata aagcggtaag cggaagcggc gttggtgagc
    14041 tctcctcttc cagcctgaaa cgctggagtg cggaaaattc ggtaaccatg agcagtaaag
    14101 tcagtggcat gaatacgttg ctctccgtta gcgcgcggac taataaccct gaacctggtt
    14161 ttcagttgat taaccagcga atcacccaca gcacgattaa cgacaatatt tgggcatcgc
    14221 tacaaaatgc tcaaattcag gcgttgaaaa cgctcgacca gcgtccagcg gagaaattcg
    14281 cccagcagat gtatgagacg cgctatgctg atgaccgcac gaaattactg caagaaaatc
    14341 agattgtaca gtttactgcc gcagatgcgc tggctgccga tcgccagttg ttttcatctc
    14401 cagcggatat cacgtttgtc attgtcggta atgtctcaga agacaaactc gtggcgttaa
    14461 ttacgcgtta cttaggatca atcaaacact ctgattcgcc attagccgca ggtaaaccat
    14521 taactcgcgc gacggacaac gcatcggtta ctgtaaaaga acaaaatgaa cctgtggcac
    14581 aggtttcaca gtggaagcgt tatgattccc ggacacctgt taatctggcg acgcgtatgg
    14641 cgctcgatgc ttttaacgtc gcactggcaa aagatctacg tgttaatatt cgtgaacagg
    14701 catctggagc atacagcgtt tcttctcgcc tctcggttga tcctcaggcc aaagatatca
    14761 gtcatttgct ggcttttact tgtcaaccag aacgacatga tgaactgtta acgttagcga
    14821 atgaagtgat ggttaagcgt ctggctaaag ggatcagtga gcaagaactg aatgaatacc
    14881 agcaaaacgt tcagcgcagc ctcgatatcc aacagcgtag cgttcaacaa ttagcgaaca
    14941 ctattgtaaa tagtcttatt caatatgacg atcctgcagc atggactgag caggagcaat
    15001 tgttgaaaca aatgacggta gagaatgtta acactgccgt taaacaatat ctttctcatc
    15061 cggtaaatac ttataccgga gtattattgc caaaataata acagccccgt caacacatcg
    15121 ttggcgggga ttttagcaat attcgctatt tttatgtaat aattttataa atgcgttcaa
    15181 aataataatc aagtactaat agtgatattt taaggtctga tttttacgtg ataattcagg
    15241 agacacagaa tgcgcataaa aataacagca taaaacacct taccaccacc caagaatttc
    15301 atattgtatt gtttttcaat gaaaaaacat tattcgcgta atatctcacg ataaataaca
    15361 ttaggatttt gttatttaaa cacgagtcct ttgcacttgc ttactttatc gataaatcct
    15421 acttttttaa tgcgatccaa tcattttaag gagtttaaaa tggataagaa gcaagtaacg
    15481 gatttaaggt cggaactact cgattcacgt tttggtgcga agtctatttc cactatcgca
    15541 gaatcaaaac gttttccgct gcacgaaatg cgcgacgatg tcgcattcca gattatcaat
    15601 gacgaattat atcttgatgg caacgctcgt cagaacctgg ccactttctg ccagacctgg
    15661 gacgacgaaa atgtccacaa attgatggat ttatccatta a
//
LOCUS       DAJVSY010000096        15612 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.096, whole genome shotgun sequence.
ACCESSION   DAJVSY010000096 DAJVSY010000000
VERSION     DAJVSY010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15612)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15612)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15612
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.096"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..243)
                     /locus_tag="OQQ19_002674"
     CDS             complement(<1..243)
                     /locus_tag="OQQ19_002674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000100290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCS1804240.1"
                     /translation="MSSWLAMLQDAAEMFVFLAVELSLLFIVISAGVSLIRQKVPDHK
                     IQQMMGARKGRGYLLAALLGAVTPFCSCSTIPMLRGL"
     gene            350..646
                     /locus_tag="OQQ19_002675"
     CDS             350..646
                     /locus_tag="OQQ19_002675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001465662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1804241.1"
                     /translation="MQLEEVAKALKELGHPTRLFIFKHLVKAGEQGLPVGELQKQLGI
                     PGSTLSHHISALVSVGLVKKNRESRTLMCVSQYAMLEAIIEFLREECCVNSKIA"
     gene            complement(780..1205)
                     /gene="arsC"
                     /locus_tag="OQQ19_002676"
     CDS             complement(780..1205)
                     /gene="arsC"
                     /locus_tag="OQQ19_002676"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-dependent arsenate reductase"
                     /protein_id="HCS1804242.1"
                     /translation="MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDEL
                     VKLIADMGISVRALLRKNVEPYEELGLAEDKFTDDRLIDFMLQHPILINRPIVVTPLG
                     TRLCRPSEVVLEILPDAQKGAFSKEDGEKVVDEAGKRLK"
     gene            complement(1218..2507)
                     /gene="arsB"
                     /locus_tag="OQQ19_002677"
     CDS             complement(1218..2507)
                     /gene="arsB"
                     /locus_tag="OQQ19_002677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite/antimonite:H(+) antiporter ArsB"
                     /protein_id="HCS1804243.1"
                     /translation="MLLAGAIFVLTIVLVIWQPKGLGIGWSATLGAVLALVTGVVHPG
                     DIPVVWNIVWNATAAFIAVIIISLLLDESGFFEWAALHVSRWGNGRGRLLFTWIVLLG
                     AAVAALFANDGAALILTPIVIAMLLALGFSKGTTLAFVMAAGFIADTASLPLIVSNLV
                     NIVSADFFGLGFREYASVMVPVDIAAIVATLVMLHLYFRKDIPQNYDMALLKSPAEAI
                     KDPATFKTGWVVLLLLLVGFFVLEPLGIPVSAIAAVGALILFVVAKRGHAINTGKVLR
                     GAPWQIVIFSLGMYLVVYGLRNAGLTEYLSGVLNVLADNGLWAATLGTGFLTAFLSSI
                     MNNMPTVLVGALSIDGSTASGVIKEAMVYANVIGCDLGPKITPIGSLATLLWLHVLSQ
                     KNMTISWGYYFRTGIIMTLPVLFVTLAALALRLSFTL"
     gene            complement(2562..2915)
                     /gene="arsR"
                     /locus_tag="OQQ19_002678"
     CDS             complement(2562..2915)
                     /gene="arsR"
                     /locus_tag="OQQ19_002678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="As(III)-sensing metalloregulatory
                     transcriptional repressor ArsR"
                     /protein_id="HCS1804244.1"
                     /translation="MSFLLPIQLFKILADETRLGIVLLLSELGELCVCDLCTALDQSQ
                     PKISRHLALLRESGLLLDRKQGKWVHYRLSPHIPAWAAKIIDEAWRCEQEKIQAIVRN
                     LARQNCSADSKNICS"
     gene            3654..3737
                     /locus_tag="OQQ19_002679"
     CDS             3654..3737
                     /locus_tag="OQQ19_002679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165328.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Damage inducible protein"
                     /protein_id="HCS1804245.1"
                     /translation="MIDKAIIVLGALIALLELIRFLLQLLN"
     gene            complement(3791..5143)
                     /gene="gorA"
                     /locus_tag="OQQ19_002680"
     CDS             complement(3791..5143)
                     /gene="gorA"
                     /locus_tag="OQQ19_002680"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003861215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HCS1804246.1"
                     /translation="MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVN
                     VGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENV
                     LGKNNVDVIKGFARFVDAKMLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGF
                     FALPALPERVAVVGAGYIAVELAGVINGLGAKTHLFVRKHAPLRSFDPMISETLVEVM
                     NAEGPQLHTNAIPKAVVKNADGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAG
                     VKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSEHLFNNKPDEHL
                     DYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMK
                     LVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVTMR
                     "
     gene            complement(5215..6057)
                     /gene="rlmJ"
                     /locus_tag="OQQ19_002681"
     CDS             complement(5215..6057)
                     /gene="rlmJ"
                     /locus_tag="OQQ19_002681"
                     /EC_number="2.1.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase"
                     /protein_id="HCS1804247.1"
                     /translation="MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAG
                     AGRYQLGSEHAERTGEYLEGIARIWQQDDLPAELEAYINVVKHFNRSGQLRYYPGSPL
                     IARQLLREQDSLQLTELHPSDYPLLRSEFQKDSRARVEKADGFQQLKAKLPPVSRRGL
                     ILIDPPYEMKTDYQAVVSGIAEGYKRFATGTYALWYPVVLRQQIKRMIHDLEATGIRK
                     ILQIELAVLPDSDRRGMTASGMIVINPPWKLEQQMNNVLPWLHSKLVPAGTGHATVSW
                     IVPE"
     gene            6260..8302
                     /gene="prlC"
                     /locus_tag="OQQ19_002682"
     CDS             6260..8302
                     /gene="prlC"
                     /locus_tag="OQQ19_002682"
                     /EC_number="3.4.24.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase A"
                     /protein_id="HCS1804248.1"
                     /translation="MTNPLLTPFELPPFSKILPEHVVPAVTQALNDCRENVERVVAQG
                     APYTWENLCQPLAEVDDVLGRIFSPVSHLNSVKNSPELREAYEQTLPLLSEYSTWVGQ
                     HEGLYKAYRDLRDGDHYATLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLS
                     ELGNQYSNNVLDATMGWTKLVTDEAELAGMPESALAAAKAQAEAKELEGYLLTLDIPS
                     YLPVMTYCDNQALREEMYRAYSTRASDQGPNAGKWDNSKVMEEILALRHELAQLLGFE
                     NYAFKSLATKMAENPQQVLDFLTDLAKRARPQGEKELAQLRAFAKAEFGVDELQPWDI
                     AYYSEKQKQHLYSISDEQLRPYFPENKAVNGLFEVVKRIYGITAKERKDVDVWHPDVR
                     FFELYDENNELRGSFYLDLYARENKRGGAWMDDCVGQMRKADGSLQKPVAYLTCNFNR
                     PVNGKPALFTHDEVITLFHEFGHGLHHMLTRIETAGVSGISGVPWDAVELPSQFMENW
                     CWEPEALAFISGHYETGEPLPKELLDKMLAAKNYQAALFILRQLEFGLFDFRLHAEFR
                     PDQGAKILETLAEIKKLVAVVPSPSWGRFPHAFSHIFAGGYAAGYYSYLWADVLAADA
                     FSRFEEEGIFNRETGQSFLDNILSRGGSEEPMDLFKRFRGREPQLDAMLEHYGIKG"
     gene            8310..9062
                     /gene="rsmJ"
                     /locus_tag="OQQ19_002683"
     CDS             8310..9062
                     /gene="rsmJ"
                     /locus_tag="OQQ19_002683"
                     /EC_number="2.1.1.242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709277.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1516)-N(2))-methyltransferase
                     RsmJ"
                     /protein_id="HCS1804249.1"
                     /translation="MKICLIDETGAGDGALSVLAARWGLEHDEDNLMALVLTPEHLEL
                     RKRDEPKLGGIFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRD
                     AFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD
                     ITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLATKRVVVK
                     RPDYAPPLANVTTPNAVVTKGHRFDIYAGTPV"
     gene            complement(9111..10580)
                     /gene="dtpB"
                     /locus_tag="OQQ19_002684"
     CDS             complement(9111..10580)
                     /gene="dtpB"
                     /locus_tag="OQQ19_002684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/tripeptide permease DtpB"
                     /protein_id="HCS1804250.1"
                     /translation="MNTTTPMGMLQQPRPFFMIFFVELWERFGYYGVQGVLAVFFVKQ
                     LGFSQEQAFVTFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGALVLAIGYFMTGMSL
                     LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIAL
                     SLAPVIADRFGYSVTYNLCGAGLIIALLVYIACRGMVKDIGSEPDFKPMSFSKLLYVL
                     LGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFRQAFKLDKTGRNKMFVAFVLML
                     EAVVFYILYAQMPTSLNFFAINNVHHEILGFSINSVSFQALNPFWVVLASPILAGIYT
                     HLGNKGKDLSMPMKFTLGMFMCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLG
                     ELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLET
                     LPVYTNVFGKIGLVTLGVAVVMLLMVPWLKRMIATPESH"
     gene            complement(10898..11332)
                     /gene="uspA"
                     /locus_tag="OQQ19_002685"
     CDS             complement(10898..11332)
                     /gene="uspA"
                     /locus_tag="OQQ19_002685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspA"
                     /protein_id="HCS1804251.1"
                     /translation="MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYS
                     DLYTGLIDVNLGDMQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKKY
                     DMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVPLRDEEE"
     gene            11723..12058
                     /gene="uspB"
                     /locus_tag="OQQ19_002686"
     CDS             11723..12058
                     /gene="uspB"
                     /locus_tag="OQQ19_002686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspB"
                     /protein_id="HCS1804252.1"
                     /translation="MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYV
                     DGGGFFTSHGQPNKQVRLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVV
                     SLIALMIWH"
     gene            complement(12301..13800)
                     /gene="pitA"
                     /locus_tag="OQQ19_002687"
     CDS             complement(12301..13800)
                     /gene="pitA"
                     /locus_tag="OQQ19_002687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter PitA"
                     /protein_id="HCS1804253.1"
                     /translation="MLHLFAGLDLHTGLLLLLALAFVLFYEAINGFHDTANAVATVIY
                     TRAMRSQLAVVMAAVFNFLGVLLGGLSVAYAIVHMLPTDLLLNMGSSHGLAMVFSMLL
                     AAIIWNLGTWYFGLPASSSHTLIGAIIGIGLTNALMTGTSVVDALNIPKVLSIFGSLI
                     VSPIVGLVFAGGLIFLLRRYWSGTKKRARIHLTPAEREKKDGKKKPPFWTRIALILSA
                     IGVAFSHGANDGQKGIGLVMLVLIGVAPAGFVVNMNATGYEITRTRDAINNVEAYFEQ
                     HPALLKQATGADQLVPAPEAGATQPAEFHCHPSNTINALNRLKGMLTTDVESYDKLSL
                     DQRSQMRRIMLCVSDTIDKVVKIPGVSADDQRLLKKLKSDMLSTIEYAPVWIIMAVAL
                     ALGIGTMIGWRRVATTIGEKIGKKGMTYAQGMSAQMTAAVSIGLASYTGMPVSTTHVL
                     SSSVAGTMVVDGGGLQRKTVTSILMAWVFTLPAAVLLSGGLYWLSLQFL"
     gene            14032..15234
                     /locus_tag="OQQ19_002688"
     CDS             14032..15234
                     /locus_tag="OQQ19_002688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HCS1804254.1"
                     /translation="MERFDAIIIGAGAAGMFCSALAGQAGRRVLLIDNGKKPGRKILM
                     SGGGRCNFTNLYVEPGAYLSQNPHFCKSALARFTQWDFIDLVNKHGIAWHEKTLGQLF
                     CDDSAQQIVDMLVDECEKGNVTFRLRSEVLSVAKDETGFTLELNGMTVGCEKLVIATG
                     GLSMPGLGASPFGYKIAEQFGLNVLPTRAGLVPFTLHKPLLEELQVLAGVAVPSVITA
                     ENGTVFRENLLFTHRGLSGPAVLQISSYWQPGEFVSINLLPDVDLETFLNEQRNAHPN
                     QSLKNTLAVHLPKRLVERLQQLGQIPDVSLKQLNVRDQQALISTLTDWRVQPNGTEGY
                     RTAEVTLGGVDTNELSSRTMEARKVPGLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQ
                     DLIAAKSS"
     gene            complement(15549..>15612)
                     /locus_tag="OQQ19_002689"
     CDS             complement(15549..>15612)
                     /locus_tag="OQQ19_002689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417948.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2776 family protein"
                     /protein_id="HCS1804255.1"
                     /translation="AVCFTLFSIVSILEAGSAKK"
BASE COUNT         3943 a         3992 c         4086 g         3591 t
ORIGIN      
        1 caatccacgt aacatgggta ttgtcgagca actacagaac ggggtaacgg ctcccaacag
       61 agcagccagg agatagcctc tcccttttct ggcccccatc atctgctgga ttttatggtc
      121 tggcaccttt tgtcttatca ggctgacacc ggcactaatc actataaaca gcaacgaaag
      181 ctcgacggcg agaaacacaa acatctctgc ggcatcttgc agcatcgcaa gccaactact
      241 catacgtaac ctcattggat aaatctatat ttccagaata atcgaaatga aattcagatc
      301 aagatatttc tggtattatc gaaatatcaa ccagacagag gggtgtcata tgcagttgga
      361 agaagtcgct aaagcgctga aagagctagg tcacccgacc cgtttgttca tatttaaaca
      421 tcttgtcaaa gccggggaac aagggttgcc ggtcggtgag ttgcaaaagc agcttgggat
      481 acctggctcc acactcagcc accatatatc agcactggta tcggtaggac tggtcaaaaa
      541 aaaccgtgag agtcggacgc tgatgtgtgt ttcgcaatac gcaatgctgg aagcgataat
      601 tgaattctta cgcgaggagt gctgcgtaaa tagcaaaatt gcctgatgcg ctacgctcta
      661 catatttcat gccatatatt gaatttgcac ggttttgtag gtcggataag acgcgttagc
      721 gtcgcatccg acataaacaa agcgcacttt accaactatc ggcagtggat atcgccgctt
      781 tatttcaggc gcttacccgc ttcatcaacc actttctcgc catcttcctt ggagaatgcg
      841 cctttttgcg catctggcag aatttccagc accacttctg aagggcggca caggcgagtt
      901 cccagcggcg tcaccacaat cgggcgatta atcagaatcg ggtgctgaag cataaagtcg
      961 attaaccgat cgtcagtaaa tttatcttcc gcaaggccca gctcctcata cggttcgacg
     1021 tttttacgca gcagcgcgcg tacggaaatc cccatatcgg caatgagttt gaccagttca
     1081 tcgcgcgttg gcggagtttc cagataatgg ataatggtcg gttctgtgcc gctgttgcgg
     1141 atcatctcca gcgtattacg cgacgtgccg caggccgggt tgtgataaat ggtaatgttg
     1201 ctcatatcag tatctcatta caaagtgaaa gagagacgta gcgccagcgc agccagcgtc
     1261 acaaacagca caggcagggt catgataatc cctgtacgga agtaatatcc ccagctgata
     1321 gtcatattct tctgcgaaag tacgtgcagc cagagtagtg tagccaggct accaattggg
     1381 gtaattttcg gtcccaaatc gcagccaatc acattggcat aaaccatcgc ttctttgata
     1441 acgccagatg ccgtgctgcc atcaatggac aacgcgccaa ccagtaccgt cggcatattg
     1501 ttcataatag aagagaggaa ggcggtgagg aatccggtgc cgagcgtcgc ggcccacagg
     1561 ccgttatccg ccagcacgtt gagtacgcca gaaagatatt ccgttaatcc ggcattgcgc
     1621 aggccataaa ccaccagata catgccgagc gagaagatga caatttgcca gggggcaccg
     1681 cgcaggactt tacccgtatt aatcgcatga ccgcgtttag cgacgacaaa taatatcagc
     1741 gcgcccacag ctgcaatggc gctcaccgga atgccgagcg gttccaggac gaaaaatccc
     1801 accagcagaa gcagtaaaac aacccagcca gttttgaacg tagcaggatc tttgatcgct
     1861 tctgcgggag atttcagcag cgccatatcg tagttctgcg gaatatcttt gcgaaaatag
     1921 agatgtagca tcaccagcgt ggcaacaatc gcggcgatat ccaccggcac catcaccgag
     1981 gcgtattcgc gaaagccgag gccaaagaaa tcagcggaaa cgatattcac caggttggag
     2041 acaataagcg gcaggctggc ggtatcggca atgaatccgg ccgccatcac gaacgccagc
     2101 gtcgtgcctt tactgaatcc taaagccagc agcatggcga tgacaatcgg cgtcaaaata
     2161 agcgctgcgc catcattggc aaacagggcg gcaacggcag caccgagcag gacaatccag
     2221 gtaaacagca agcgaccacg accattaccc cagcgtgaga cgtgcagcgc cgcccattca
     2281 aaaaagccgg actcatccag cagcaggctg atgataatga cggcgataaa cgcagccgtc
     2341 gcgttccaga cgatattcca caccaccgga atatcacccg gatggaccac gcccgtaact
     2401 aacgccagta ctgcgccgag cgttgcactc cagccgatgc ctaaaccttt cggctgccag
     2461 ataaccaata caatggtcag gacaaagata gcgcctgcca gtaacataat gcctcctgga
     2521 taaaacacat gcgaaaatac atatgtgttt agctaaattt tttaactgca aatgttctta
     2581 ctgtctgcgg aacagttttg tcgagccagg ttgcggacaa ttgcctgaat cttttcctgt
     2641 tcacatcgcc aggcttcatc aattattttc gccgcccatg ctggaatatg cggcgataag
     2701 cggtaatgaa cccatttacc ttgcttgcgg tccagcaata gcccgctttc acgcagcaat
     2761 gccaggtggc gggagatctt gggctgcgac tggtcgagag cagtgcagag atcgcagacg
     2821 cataactctc ccagttcgct gagcagtaaa acgatgccca gacgggtttc atcagcaaga
     2881 attttgaaca attggatggg taacagaaat gacatattgc gctcctgatt gttgcaggta
     2941 gtgtctctct tcgaagcgga taagtcaaaa acatatatga tttaacgaat gtgtaagtgc
     3001 agaggaaggt aataggtgtg aattttgagt tggctattca tttgaaagga ggtctgaatc
     3061 aggacgtaaa aaaaccgact ttgcgtcggt tttttacttt ccagccctga gttggtggct
     3121 ctggctggag tgagagagtt cttatctaac agctcaatac tattagccag tggctaacat
     3181 tgcaagaatt agcgatttct tcagctggcg gagggagcac ttcggtatat atcgcagtga
     3241 cgatttatat actttcactg ggtcatcgtc atattaagcc ttgtccgaat ccggatgtaa
     3301 aaaaccgact ttgcgtcggt tttttacttt ccagccctga gttggtggct ctgactggag
     3361 tgagatagcc atcatctaac gcatcaatgc taataccata ctgaaactat tgcaaggacg
     3421 tgctggtttt ataacctgca tgtactgtat gattatccag ttagctctga ggcattttca
     3481 ctctggcaat gcgcataaac gctttcaaag tcctggtcag aagtacgggt ggtgccgtta
     3541 actgatgctc tggccggagt gagagagttc ttatctaaca atgagacatg cgccgtgaca
     3601 ggcagtggat gagtaagcgg atgcattctc actccatcgc atggagaaaa cgggtgattg
     3661 ataaagcaat catcgttcta ggggcgttaa ttgcgctgct ggaactgatc cgctttctgc
     3721 ttcagcttct gaactgatag cggaaacgta attaagggct aagagcacac tactcttagc
     3781 cctttaacat ttaacgcatt gtcacgaact cttctgccgc cgttgggtga atggcgacgg
     3841 tattgtcgaa gtcttttttg gttgccccca tcttcagcgc caccgcgaag ccctgcaaca
     3901 tttcgtccat accaaagcca atgccgtgaa taccgacaat cttctcttcc gatccaacgc
     3961 acaccagctt catgcggcac ggctggcggt gagtggtgac ggcggtatac atcgcggtga
     4021 aagaggattt atacactttc acctgatcgt cgccatactg ctcgcgcgcc tgcggttccg
     4081 ttaaaccaac agtaccaatc ggcggatggc tgaagaccac ggtcggaatg ttgctgtaat
     4141 ccagatgctc atccggcttg ttattaaaca ggtgttcaga gagacggcga cccgctgcaa
     4201 ctgccaccgg tgtcagctcc actgcacccg tgttatcgcc caccgcgtaa ataccttcaa
     4261 tgttggtgtt ttgatattta tcgacgacga tatagccttt ttcgttggtt ttaacgccag
     4321 cggcttcgag gttgatgttg tcattggcag gctcgcgacc aatcgcccaa atcaggcaat
     4381 ccaccgtttc actgcgacca tcttccagct ccagcgtcag gctaccatcg gcatttttca
     4441 ctaccgcttt cgggatggcg ttggtgtgca gctgcgggcc ttcggcgttc atcacttcga
     4501 ccagcgtttc ggaaatcatc gggtcgaagc tgcgcagcgg cgcatgttta cgcacaaaca
     4561 gatgcgtttt cgcgccgagg ccgttaatca cgcccgccag ctcaacggcg atgtaacccg
     4621 cgccaacaac cgccacgcgc tctggcaaag caggaagggc gaagaagcca tcagaatcaa
     4681 taccgtattc cacgcccgga atatccgggt ggctcggacg accgcctgtg gcgatcagaa
     4741 tatgatcggc cgtgatggtt tcgccgttta cctccagcat tttggcatca acgaagcggg
     4801 caaagccttt gattacatca acgttatttt taccgagcac gttttcatag gaagtatgaa
     4861 tacggtcgat ataggcggta cggctggcga tcaacgtttc ccagttgaac ttgttgatgg
     4921 tggtatcgaa accataatca gggccgtaca tatggatcgc ttcacggatt tgcgccgcgt
     4981 gccacatcac ttttttcggc acgcagccga cgttcacgca ggtgccgccc agctctttgg
     5041 cttcaatcag tgcgcatttc tggccgtaca tagccgcgcg gttgatggag gctataccgc
     5101 cgctgccgcc gccgatggcg atgtaatcat agtgtttagt catgacagag tgtccttatc
     5161 gttgattacc gcgattgtag cgcgagacgt aataggtgcc agcaatggct gcaattactc
     5221 cggcacgatc cagcttacgg tggcgtgccc ggtgcctgcc ggaaccagtt tgctgtgcag
     5281 ccacggcagc acgttattca tctgctgttc cagtttccac ggcgggttaa tcacaatcat
     5341 gccggaagcg gtcatgccac ggcgatcgct gtctggcagt accgccagtt caatttgcag
     5401 aattttgcga ataccggtcg cttccagatc gtggatcatg cgcttaattt gctgacgcag
     5461 caccaccgga taccacagtg cgtaagtacc agtggcgaaa cgtttgtaac cttctgctat
     5521 cccgctgacc accgcctgat agtcggtttt catttcatac ggcgggtcga taaggattaa
     5581 accacggcgg gaaaccggcg gcagtttggc cttaagctgc tggaaaccat cggctttttc
     5641 gacgcgcgca cggctgtctt tctgaaattc agaacgcagc aacgggtaat cgctcgggtg
     5701 cagttcggtc agttgcaggc tgtcttgttc gcgcagtagc tggcgagcaa tcaatggcga
     5761 accggggtag taacgcaact gaccgctacg gttgaagtgt tttaccacat tgatgtacgc
     5821 ctccagttct gcgggcaaat cgtcctgctg ccagatacgg gcgatgcctt cgagatattc
     5881 gccggtacgc tcggcatgtt cgctgcctaa ctgataacgc ccggcccctg cgtgggtgtc
     5941 gagatagaga aacggtttat ctttctcttt cagcgactcg atgatcaggc tctgaacggt
     6001 atgtttaagg acgtcggcgt ggttgccagc gtgaaagctg tggcgataac tgagcatggg
     6061 taaaggtgtt ccggtaagta aaaatcggcc cgtattcggg gcgcacaaaa gcgtatcagg
     6121 acagtatacc gaaaagaggc cgccgccgcg aaagcgtaac gtttctcatt gaaattcact
     6181 acacttaacc ccatgctaca cacattatgt aaagcgcctg ttgagcgctt ccttaacctc
     6241 tttaaccagg actgcgcgaa tgacgaatcc gttactgact ccctttgaat tgcctccgtt
     6301 ttctaaaatt ctcccggaac atgtcgttcc agccgtgact caggcgctga acgattgccg
     6361 cgaaaatgtg gagcgcgtag tagcgcaagg ggcaccgtac acctgggaaa atctctgcca
     6421 gccgttggcg gaagtggacg atgtgttggg gcgtatcttc tccccggtca gccacctgaa
     6481 ctcggtgaaa aatagcccgg aactgcgtga agcctacgag caaaccctgc cgctgctgtc
     6541 ggaatacagc acctgggtag ggcaacatga agggctgtat aaagcgtacc gcgacctgcg
     6601 cgatggcgat cattacgcca cgctgaacac ggcgcagaag aaagcggttg ataacgccct
     6661 gcgtgatttt gaactctctg gcataggtct gccgaaagag aaacagcagc gttacggcga
     6721 aattgcgacc cgtctttctg aactgggcaa ccagtacagc aacaacgtcc tcgatgcgac
     6781 aatgggctgg accaaactcg ttaccgacga agcggagctg gcggggatgc ctgaaagcgc
     6841 gctggctgcg gcaaaagccc aggccgaagc gaaagagctg gaaggctacc tgctgacgct
     6901 ggatatccca agctacctgc cggtaatgac ctactgcgac aaccaggcct tgcgtgaaga
     6961 gatgtatcgc gcttacagca cccgcgcctc cgatcaaggc ccgaacgccg gtaaatggga
     7021 taacagcaag gtgatggaag agatcctcgc tctgcgtcac gaactggcgc aactgctggg
     7081 ctttgaaaac tacgccttta aatcccttgc cactaaaatg gcagaaaacc cgcagcaggt
     7141 gctggatttc ttaaccgatc tggcaaaacg cgcgcgtccg caaggcgaaa aagagctggc
     7201 acaactgcgc gccttcgcca aagcggaatt tggcgtcgat gagttgcagc cgtgggatat
     7261 cgcgtactac agcgaaaaac aaaaacagca cctctacagc atcagtgacg aacagctgcg
     7321 tccgtacttc ccggaaaaca aagcggttaa cggcctgttt gaagtggtga aacgtattta
     7381 cggcatcacc gctaaagagc gtaaagatgt tgatgtctgg catccggatg tacgtttctt
     7441 cgaactgtat gacgagaaca acgaactgcg cggcagcttc tacctcgatc tgtatgcccg
     7501 tgaaaacaag cgcggcgggg cgtggatgga tgactgcgta ggccagatgc gtaaagctga
     7561 cggttctctg caaaaaccgg tcgcgtattt gacttgtaac ttcaaccgcc cggtaaatgg
     7621 taaaccggcg ctgttcactc acgacgaagt gatcaccctg ttccacgagt tcggtcacgg
     7681 cctgcaccat atgctgaccc gcatcgaaac cgctggtgtt tccggtatca gcggtgtgcc
     7741 gtgggatgcg gtcgaactgc cgagtcagtt tatggaaaac tggtgctggg agccggaggc
     7801 gctggcgttt atctctggtc actatgaaac cggcgaaccg ctgccgaaag agttgctgga
     7861 taaaatgctg gcggcgaaga actaccaggc ggcgctgttt attctgcgcc agctggagtt
     7921 cggcctgttc gatttccgcc tccatgccga gttccgcccg gatcagggtg cgaaaatcct
     7981 cgaaactctg gcagaaatca agaaactggt tgccgtagta ccgtctccat cctggggccg
     8041 tttcccgcac gctttcagcc atattttcgc cggtggttat gccgcaggtt actacagcta
     8101 cctgtgggct gacgtactgg cggcagatgc cttctcgcgc tttgaggaag agggcatttt
     8161 caaccgtgaa accgggcagt cgttcctcga caacattctg agccgtggcg gttcagaaga
     8221 gccgatggat ctgttcaaac gcttccgtgg tcgtgaaccg cagctggatg cgatgctgga
     8281 gcattacggc attaagggct gatcattcag tgaaaatctg cttaattgat gaaacaggcg
     8341 ccggagacgg cgccttatct gttctggcgg cccgctgggg gctggagcac gatgaagaca
     8401 acctgatggc gctggtgtta acgccggaac atctggaatt gcgcaagcgt gatgagccaa
     8461 aacttggcgg catctttgtt gattttgttg gcggagcgat ggcgcaccga cgcaaattcg
     8521 gcggtggtcg cggtgaggcg gtggcgaaag cggtgggcat taaaggcgat tatttgccgg
     8581 atgtggtgga cgccaccgca gggctggggc gcgatgcctt tgtactggct tcagtcggct
     8641 gccgcgtgcg gatgctggag cgtaatccag tggttgccgc gctactcgac gacggcctgg
     8701 cgcgtggtta tgcggatgcg gaaatcggcg gctggttgca ggagcggttg cagttaattc
     8761 acgcctccag cctgacggcg ctaaccgata ttaccccacg cccgcaggtg gtctatctcg
     8821 atccgatgtt cccgcataag cagaaaagcg cgctagtgaa aaaagagatg cgtgtctttc
     8881 agtcgctggt gggaccggat cttgatgccg atggattact ggagcctgca cgcttgctgg
     8941 cgaccaaacg cgtggtggta aagcgcccgg actacgcgcc accgctagcg aatgtcacca
     9001 cgccaaacgc ggttgtgact aaagggcatc gctttgatat ctatgcaggt acgcccgtgt
     9061 aaaagtaaag cagggtagcg ataacgctac cctgctttct gcaagaataa ttaatggctt
     9121 tccggcgtcg caatcatgcg tttcagccac ggcaccatca acagcatcac tactgcaacg
     9181 cccagcgtga ccagaccaat cttaccaaac acgttggtat agacgggcaa cgtctcaagc
     9241 ggatcggtaa tgttgtccgg caccgcggta aatgttgcca catagccgcc cagcaagaac
     9301 gcggcagcct gcgtcaggaa ccacatcccg agaataaagc ccatcaaatg ctgcggcacc
     9361 agggcagcaa tcatcgccag gccaagggcg ctaataaaca gttcacctaa gctctggaat
     9421 aagtacacca gcacgataaa ccatggcgat gtcagccctt gtgcatccgc aaaccacatt
     9481 cccgcagctg ccgccgtcaa aaagcccagt gagcacataa acatgccgag agtaaatttc
     9541 atcggcatcg agaggtcttt gcctttgtta cccagatgcg tgtaaatgcc tgccagtatt
     9601 gggctggcga gtaccaccca gaacgggtta agcgcctgga agctgaccga gttgatggaa
     9661 aaaccgagaa tttcatgatg cacgttgttg atggcaaaga agttcagcga tgttggcatc
     9721 tgggcgtaga gaatgtaaaa caccaccgct tcgagcatca ggacaaaggc gacaaacatt
     9781 ttattgcgcc cggttttatc cagcttgaat gcctgacgaa agaagatgat ggtgacgacg
     9841 atggagagaa caatcagcac cagattggcg acttctacgt tgtgcatcag ccatgcacat
     9901 acgaagatca tcaccacgct gccaagtaat acgtacaaca gtttgctgaa gctcatcggc
     9961 ttgaagtcgg gttcagaacc aatgtctttc accattccac gacaggcgat gtaaaccagt
    10021 aatgcgataa ttaaccccgc cccgcacagg ttgtaggtga ctgaataacc gaatctatca
    10081 gcgatcacag gggccagcga taacgctatc aacgagccga tattgatcga catatagaac
    10141 agggtgaatg cgccatcaag ccgcggatct ttcggcggat agcacttcga aagcaagctg
    10201 gctgggttag ctttaaacag gccgttaccg acagcgatag tccccagggc gatgaaaatc
    10261 aggtcaggct taagtagcga catgccggtc atgaagtagc caatcgccag cacaagtgct
    10321 ccgagaacaa tggtgcgttt ggtccccagc aggtggtcgc cgacatagcc gccaatggaa
    10381 atgaggccat agaccagcgc agcaaaagca ccaaaagtga caaaagcctg ctcttgcgag
    10441 aatccaagct gtttaacgaa gaaaaccgcc agtacgccct gcacgccgta gtagccgaat
    10501 cgctcccata actcgacaaa aaagatcatg aaaaatgggc gaggttgctg cagcatcccc
    10561 atgggtgttg ttgtattcat atttattaac cttccaatac catcctgaaa agtatgaacg
    10621 cgtaagggat aacgcgcgaa aaagtttaca tctgtcagag attcttaata ttgatgcggt
    10681 gaatggatta atacactatt acaacagaaa ataaccagct aatcacacta atgatggaaa
    10741 atatgatggt gttaaatgtt gtattggcag gagattttga ttgcgtacgc agatcgtagg
    10801 ccagataagg ggtttacgct gcatcaggta acaaggcgcg ccaaaaagca aaacgcccgc
    10861 atatgcgggc gttcaggaac acgtcgtgga gggaagatta ttcttcttcg tcgcgcagcg
    10921 gaacaatcag catatcaacg tgaacggtgt tgatcagctg acgtgcggaa gacatcagtt
    10981 tgctccagaa gtcctggtgg tgaccacaaa ccaccagatc catatcgtat ttcttgattg
    11041 catcgaccag aacctggccc aggtcgccgc tgccgctcag ggtttcagtg attgggtagc
    11101 ctgcattagt ggaaagctcg gtcagcgcat gatgtgtctc ttcagagatg cgtttctgca
    11161 tatcacccag attcacatca ataagcccgg tgtataggtc agagtagttt acatctacgt
    11221 ggatcagaga aactttcgca ttgtaggggc gagccataga gactgctttc tctaccagaa
    11281 ctttgctttc cggggagaga tcgaccgcga tgagaatgtg tttataagcc atagtgttac
    11341 tccttccata aagttgtcga tgactggcca gctagcgttt cttgtgccgt tacgtcaccc
    11401 gcgtcctgcg aactacgtgc gcggggctaa cccagccgta aagattcagt gttaagacca
    11461 tccttacctt atagcgaccc ggatgatccg tcaatccgcc ttgcttaccc gttagataaa
    11521 caaattttcg acatgaatat attgatagtg gttaaccttc tggaaaaaaa acaacctgat
    11581 ctcctacact atctatagag ccgctcggat gttggtcacc acaaaagcgg tttctccagg
    11641 acctggtgtt aactgattgg cagcgtatcg ggagcggtag ccccggggtg gaactccgcg
    11701 ggcaggtcgc cggggaggag gtatgataag caccgtcgca ttattttggg ctttatgtgt
    11761 cgtttgcatt gttaacatgg cgcgctattt ctcatcacta cgcgcgttgt tagtggtact
    11821 gcgtaactgc gatccattgc tctatcaata tgttgatgga gggggctttt ttacctcaca
    11881 tggccaaccc aacaaacagg tgcgtctcgt ttggtatatc tatgcccaac gttatcgcga
    11941 tcatcacgat gatgagttta ttcgccgctg tgagcgggtg cgtcggcagt ttattctgac
    12001 tagcgcattg tgtggtctgg tggtggtcag cctgattgca ttgatgattt ggcattaagc
    12061 acttcagcaa taataacgca taaaaaaagc tggccagtaa actgacccgc tcgagactga
    12121 ttacaaacgc aaaattgcct gatgcgctac gcttatcagg cctgcataat ctctgcaatc
    12181 tattgaattt gctgtttttg taggccgaat aaggcgttca cgccgcatcc ggcatgaaca
    12241 aagcgcacta tgtcacaatc tgaagcgggc cagctgaccc gctcgttttg gtgcgtacga
    12301 ttacaggaac tgcaaggaga gccagtacag cccgccggaa agcagtaccg cagccggaag
    12361 ggtaaacacc caggccatca gaatgctggt cacggtttta cgctgtaagc cgccaccatc
    12421 taccaccatc gtccccgcga cagaagagga gagtacgtga gtagtggaaa ccggcatccc
    12481 ggtataactc gccaggccga tagacactgc cgccgtcatc tgggcagaca tcccctgagc
    12541 gtaggtcatg cctttcttac cgattttctc accgatagtc gttgccacac gacgccagcc
    12601 aatcatcgta ccgataccta acgccagcgc gaccgccatg atgatccaca ccggtgcata
    12661 ctcgatggtg ctaagcatgt cggacttcag tttcttcaac aggcgctgat cgtcagcact
    12721 cacgccaggt atcttcacta ctttgtcgat agtgtcagaa acgcacagca taatgcggcg
    12781 catctggcta cgttgatcaa gcgacagctt gtcgtagctt tccacatcgg tagttaacat
    12841 acctttcagg cggttgagcg cgttaatggt attcgacgga tggcaatgga actccgcggg
    12901 ttgcgttgcg ccagcttccg gagccggtac taactgatca gcaccggtag cctgtttcag
    12961 cagcgcagga tgctgctcaa agtaagcttc gacgttgttg atggcatcac gggtacgggt
    13021 gatttcgtag ccagtggcat tcatattcac cacgaagcct gctggtgcga caccaatcaa
    13081 taccaacata accagaccaa tgcctttctg accatcgttc gcgccgtgcg aaaacgccac
    13141 gccgatagcg gaaaggatca gcgcaatacg cgtccagaac ggcggctttt tcttgccgtc
    13201 tttcttttca cgctccgctg gggtcaggtg gatacgggcg cgtttcttgg tgccgctcca
    13261 gtagcgacgc agcaagaaaa tcagaccgcc agcaaacacc aggccgacaa taggggaaac
    13321 aatcagagaa ccgaaaatac ttaatacttt cgggatattg agtgcatcca ccactgacgt
    13381 cccggtcatc aacgcattgg ttaaaccaat cccgatgatc gcgccaatca gtgtatgaga
    13441 gctggatgca ggtaaaccaa agtaccaggt acccaggttc cagataatcg ccgccagcaa
    13501 catagagaac accatggcaa ggccatgaga cgatcccata ttaagcagca gatccgtcgg
    13561 cagcatatgc acaatggcat aggcaacact cagaccaccc agcaaaacac ccaaaaagtt
    13621 gaacaccgcc gccataacca cggcgagctg agaacgcatc gcgcgggtat agataacggt
    13681 tgccacggcg ttggctgtgt catggaaacc attgatggct tcgtagaaca gcacaaaagc
    13741 cagtgcaagc aataataaca gcccggtatg caaatccagg ccagcaaaca aatgtagcat
    13801 aggacgttac gccattttga ggacatgaac gcggcgcatt atcagtgact ttcgcggcgc
    13861 gggcaaagtg aaatatagac tttttttgat ttgcctcctg tatggatttc actcaaaaaa
    13921 taattatctt atataattca ggcaaatact tccttttagt aatattgatg ctggtgtgac
    13981 cactgaggaa tctttacaat tcacgcccgt tttttctaag aggagcgcaa cgtggaaagg
    14041 tttgatgcca ttattatagg cgctggtgcg gcgggtatgt tctgttctgc gctggcaggt
    14101 caggcaggac gccgggttct gctgatcgat aatggtaaaa aaccagggcg caaaatcctt
    14161 atgtctggcg gtgggcgctg caactttacc aacctttatg tcgaaccagg cgcttatctg
    14221 agccagaatc cgcatttttg taagtctgca ctcgcgcgtt ttacccagtg ggatttcatt
    14281 gatctggtca ataaacacgg catcgcctgg cacgagaaaa cgttaggaca actcttctgc
    14341 gatgactccg cgcagcagat tgtcgacatg ctggtggatg agtgcgagaa gggcaatgta
    14401 accttcagat tgcgtagcga agtgctgagt gtggcgaagg atgaaacagg cttcacgctt
    14461 gaactgaacg gcatgactgt cggttgcgaa aagctggtca tcgcgaccgg tgggctgtca
    14521 atgccggggc tgggcgcatc gccgtttggt tataagattg ccgaacaatt tggcctcaac
    14581 gtgctgccga cccgtgcggg tctggtgcca ttcactctgc ataaaccgtt gctcgaagag
    14641 ttacaggtgc tggcgggcgt ggcggtgcct tccgtgatta ccgctgaaaa cggcaccgtt
    14701 ttccgtgaga acttactctt cacccaccgc ggcttatctg gaccggcggt gttgcagatt
    14761 tccagctact ggcaaccggg tgaatttgtc agtatcaatc tgctaccgga tgtggacctc
    14821 gaaaccttcc tgaatgagca gcgtaacgca catccgaatc agagcctgaa aaacacactg
    14881 gcggttcatc taccgaagcg gttggttgaa cgcttacagc aactcgggca aatcccggat
    14941 gtttcgctaa aacagctcaa cgtgcgtgac caacaggcac tgattagcac attgaccgac
    15001 tggcgcgtac aacccaacgg cactgaaggc tatcgcactg ccgaagtgac gctcggcggc
    15061 gtggacacca acgaactctc ttcacggacg atggaagcgc gcaaagtgcc tgggctgtac
    15121 ttcatcggcg aagtgatgga cgttaccggc tggctggggg gctataactt ccagtgggcg
    15181 tggtcgagtg cgtgggcttg tgcgcaggat ttgattgcag cgaagtcgtc ctgacctgtt
    15241 acctaaagat gaaaattatt agagccgcat taaaaatgag ctaattttga tagtggctat
    15301 cttgtgatta ttttctaatg agcccgtgaa ctgaaaccct ccaggcttaa tataaggtgg
    15361 aaggaaagat gattgaaaac tcacccagtg gccagatctt tataaaatat gaacaggctg
    15421 aaaaagacag taactttgtt gttttttatc cttaaccact atgcattaat gctgcgttat
    15481 ttcatgatgc ctaagaaaaa ccagcgttac gcaaatggtc aacgctggtt ttatccggta
    15541 cgttgcaatt attttttagc agaacctgct tctaatattg aaacgattga gaacaacgta
    15601 aagcataccg ct
//
LOCUS       DAJVSY010000097        15313 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.097, whole genome shotgun sequence.
ACCESSION   DAJVSY010000097 DAJVSY010000000
VERSION     DAJVSY010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15313
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.097"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(21..464)
                     /locus_tag="OQQ19_002690"
     CDS             complement(21..464)
                     /locus_tag="OQQ19_002690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000829114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HCS1804256.1"
                     /translation="MAELQKVDDWLSALLANLEPAARSRMMRQLAQELRRTQQQNIRM
                     QRNPDGSSYEPRRVTARSKKGCIKRQMFTKLRTTKYLKTAASADSASVQFEGRVQRIA
                     RIHHYGLSDRVSRKGIYTIYAKRQLLGFNVQSIELIERMFIKNLT"
     gene            complement(457..888)
                     /locus_tag="OQQ19_002691"
     CDS             complement(457..888)
                     /locus_tag="OQQ19_002691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1804257.1"
                     /translation="MNKPQSLRHALNKAVPYVRNNPDKLHLFVDNGSLVASGASSMSW
                     EYRYTLNVVIEDFSGDQNLLMAPVLLWLRDNQPDAINNPALREKLFTFEVDILRNDVC
                     DISLNLQLTERVLVSTDGSVSNVEAVAEPDEPEEMWTVKRG"
     gene            complement(984..1412)
                     /locus_tag="OQQ19_002692"
     CDS             complement(984..1412)
                     /locus_tag="OQQ19_002692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysB family phage lysis regulatory protein"
                     /protein_id="HCS1804258.1"
                     /translation="MNRLLLVVLALLLAALGWQTWRLADASQTISTQADELQSKSQAL
                     AKSNSQLISLSILTETNNREQARLYAEAEQTSVLLRQRQRRIEELKRENEDLRRWADT
                     PLPADIIRLRERPALTGGAAYRQWLSASDAVSAGAGSAAH"
     gene            complement(1409..1786)
                     /locus_tag="OQQ19_002693"
     CDS             complement(1409..1786)
                     /locus_tag="OQQ19_002693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000730949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804259.1"
                     /translation="MKKKLISGLFLMLWMALLIAAMVYPQGIFPVLAASGVWVACLLT
                     WAVIPVALASLIKNGPLWQELRASLLKTITRKENVFISWVIRLLIVVSLAWTGWAITL
                     VFYLLTVIAFWITHNQMAQQVAA"
     gene            complement(1788..2300)
                     /locus_tag="OQQ19_002694"
     CDS             complement(1788..2300)
                     /locus_tag="OQQ19_002694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001069913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HCS1804260.1"
                     /translation="MNPSIVKRCLVGAVLAIAATLPGFQQLHTSVEGLKLIADYEGCR
                     LQPYQCSAGVWTDGIGNTSGVIPGKTITERQAAEGLISNVLRVERALEKCVKQQPPQK
                     VYDAAVSFAFNVGTGNACSSTLVKLLNQRRWADACRQLPRWVYVKGVFNQGLDNRRAR
                     EMAWCLQGAN"
     gene            complement(2281..2496)
                     /locus_tag="OQQ19_002695"
     CDS             complement(2281..2496)
                     /locus_tag="OQQ19_002695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804261.1"
                     /translation="MTLERISAFITYCIAVVLAWLGDLSIKDASTLGGLMIGVLMLAI
                     NWYYKHKAYQLLRDGQISREDYESINR"
     gene            complement(2500..2703)
                     /locus_tag="OQQ19_002696"
     CDS             complement(2500..2703)
                     /locus_tag="OQQ19_002696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HCS1804262.1"
                     /translation="MKVRAHQYDTVDALCWRHYGRTQGVTEQVLKANPGLAEYGPFLP
                     HGLQVELPDIPTTTTVQTVQLWD"
     gene            complement(2703..3167)
                     /locus_tag="OQQ19_002697"
     CDS             complement(2703..3167)
                     /locus_tag="OQQ19_002697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HCS1804263.1"
                     /translation="MKFVAPEQAPEQAEIIRNTPFWPDVDLSEFRSVMRTDGTVTQPR
                     LKQVALSAISEVNAELYEFRRRQQMLGYASLAEVPAEQLDGKSERIQHYFNAVYCWAR
                     AMLNERFQDYDATASGAKRGEELAEASGDLWRDARWAISRVQDAPHCTVELI"
     gene            complement(3263..3913)
                     /locus_tag="OQQ19_002698"
     CDS             complement(3263..3913)
                     /locus_tag="OQQ19_002698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase endonuclease subunit"
                     /protein_id="HCS1804264.1"
                     /translation="MSLSPARQHRLRVQAEQAVREGGSVRHASGYDLMLLQLAEDRRR
                     LKGVQSTVKKAEIKVELLPKYAAWAEGVLAAGGAQQDDVLMYVMLWRIDAGDYAGALE
                     IGRHALRHGWVMPLGNRNVQTVLTEEMADAAQSAMLAATGFDADLLLQTLELTDGLDM
                     PDQSRARLHKAIGAVLSESNPASALNHLNHALQLDPRCGVKKDKQQLERRLRNDSR"
     gene            complement(3917..4975)
                     /locus_tag="OQQ19_002699"
     CDS             complement(3917..4975)
                     /locus_tag="OQQ19_002699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein, P2 family"
                     /protein_id="HCS1804265.1"
                     /translation="MKKNTRFAFNAYLQQLARLNGVAVEELSSKFTVEPSVQQTLEDQ
                     IQQSAAFLTLINVTPVTEQSGQLLGLGVGSTIAGTTDTTAKEREPVDPTLMVDVEYKC
                     EQTNFDTVLTYAKLDLWAKFQDFQVRIRDAIVKRQALDRIMIGFNGVKRAKTSNRSEN
                     PLLQDVNKGWLQKIREDAPDHVMGSTTTGGETTPGAVKVGKGGEYANLDAVVMDAVNE
                     LIDVVYQDDDDLVVICGRELLSDKYFPLVNKEQENSEKLAADMIISQKRMGGLQAVRA
                     PFFPPNALLITRLDNLSIYWQEDTRRRSVIDNPKRDRIENFESVNEAYVVEDYRCAAL
                     VENIQISDFSAAAAETGA"
     gene            complement(4992..5825)
                     /locus_tag="OQQ19_002700"
     CDS             complement(4992..5825)
                     /locus_tag="OQQ19_002700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HCS1804266.1"
                     /translation="MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALIN
                     LEHIKSYLPDSTFNRYGKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKL
                     FTFMEVSPKFADTGKAYLVGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFT
                     AAEETVIELEEVQDDKPSLFARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSAR
                     TEKSLSEQEERLSELETALQAQQTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTN
                     C"
     gene            5968..7734
                     /locus_tag="OQQ19_002701"
     CDS             5968..7734
                     /locus_tag="OQQ19_002701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase ATPase subunit family protein"
                     /protein_id="HCS1804267.1"
                     /translation="MNTTLTPADLDPRRQAMLLYFQGYRVARIAEMLGEKVATVHSWK
                     KRDKWGDYGPLDQMQLTTAARYCQLIMKEHKEGKDFKEIDLLARQSERHARIGKFNNG
                     GNEADLNPNVANRNKGPRRQPEKNVFTDDQIEKLEKIFHSSMFNYQRHWWEAGKTNRI
                     RNLLKSRQIGATFYFAREALIDALLTGRNQIFLSASKAQAHVFKQYIIDFAKEVEVEL
                     KGDPMVLPNGATLYFLGTNARTAQSYHGNLYLDEYFWIPKFQELRKVASGMAIHKKWR
                     QTYFSTPSSLTHSAYPFWSGALFNRGRNKADKVDIDLSHSNLAPGRLCADGQYRQIVT
                     VEDAVRGACNLFDLDQLRMEYSPDEYQNLLMCEFVDDLASVFPLSELQACMVDSWEVW
                     TDFHALALRPFGWREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGM
                     DFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYENVKAFFPAVREFVYNPNVKNALVL
                     KAYDIISHRRLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASHADLAWATM
                     HALFNEPLQGESANTSNIVEIF"
     gene            7734..8330
                     /locus_tag="OQQ19_002702"
     CDS             7734..8330
                     /locus_tag="OQQ19_002702"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804268.1"
                     /translation="MGKSKKNRAAATKQTQHKNQTSAEAFSFGDPVPVLDRRELLDYV
                     ECVQTDRWYEPPVSFDGLARTFRAAVHHSSPIAVKCNILISTYIPHPLLSQQAFSRFV
                     QDYLVFGNAYLEKRTNRFGEVIALEPALAKYTRRGLDLDTYWFVQYGMTTQPYQFTKG
                     SIFHLMEPDINQEIYGLPGYLSAIPSALLNESATLFRR"
     gene            8364..8765
                     /locus_tag="OQQ19_002703"
     CDS             8364..8765
                     /locus_tag="OQQ19_002703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000281959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HCS1804269.1"
                     /translation="MYMTDAAQNQEDVNNLRNAMKSAKGPGNFRNLFMYSPNGKKDGL
                     QIIPLSEVAAKDEFLNIKNVSRDDMMAAHRVPPQMMGIMPNNVGGFGDVEKASLEFVR
                     NELIPLQKRMMEINKLVSENIVKFDSYKLAT"
     gene            complement(8872..9753)
                     /locus_tag="OQQ19_002704"
     CDS             complement(8872..9753)
                     /locus_tag="OQQ19_002704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004982020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804270.1"
                     /translation="MKWAIEMNKLKRPVFKDYSAFKKLSANKRLKHHSVLNGQDTFIL
                     NAYRSYIKNKGYLNVNSCGVLSNNIAEALRYYYNNPAKCLSIIDDIRAANSNSLCPMC
                     GSMHSGTLDHVLPKENYPEFSLFTKNLVPACKCNTFKSTTIANSAGHRMLHPYFDNIL
                     KQRLICANFSKLGRTPTIDVKIIIDPMSPEYNNVKYHLDNVVIKNNIKGYLSEQWESF
                     YLYPELVIRGLNKSLSTYSDVYELLTRELLLLDEKHKGKNNWNSVFVAGLIRPDVIRW
                     ILCELHLGNRSPDGRLI"
     gene            complement(9737..11386)
                     /locus_tag="OQQ19_002705"
     CDS             complement(9737..11386)
                     /locus_tag="OQQ19_002705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000960487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCS1804271.1"
                     /translation="MLVKKNKNYSLYFLITNNQQISDSGNYIKIVPSRSDWNDFGYLS
                     RVEISIFNKKECKDIISLNGYIGFLNSEEERNGKAELIRRVKKKEESNLKDEGFNDYF
                     VMLQDMNNYRRLVRFFGVNESKYILNFINDVVSKKSDASAENLRKKAISSDIFNKSFI
                     RESESYFTFKNAGTVLSGIQYEELGNLSQHIKISYSNKVNEEDVSYVFNFDHEHDLPK
                     RISIIIGENGVGKSQTLREIALAAIKGKDNLVAVVDSNGVSIEERIQISRLIAFSPTN
                     ESKCSFPTDKRIKSLIWYKRLTLNRESKSKLNLNDLIVQLARSNDAIGYNQRWNIFVD
                     ALSVLNSNNDLVIKCGGENSPFVKLNELNSRGEESRLSLYSEIILSGEPLRLIENKCY
                     PLSSGEISFIKFCVQVCLYIENGTLLLIDEPETHLHPSFINKFMALLDNLLEKTGSSA
                     IIATHSVYLVREVFKEQVTILRRRDDGVIVSEKPRLSTFGANIGNISYFVFGESEPTQ
                     ILNKVKNNIIAKNMSWDDVESKYSEDLSLNVLTALRNEMGN"
     gene            complement(11679..11912)
                     /locus_tag="OQQ19_002706"
     CDS             complement(11679..11912)
                     /locus_tag="OQQ19_002706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI family protein"
                     /protein_id="HCS1804272.1"
                     /translation="MRIEIMIDKEQKISQSTLDALESELYRNLRPLYPKTVIRIRKGS
                     SNGVELTGLQLDEERKQVMKIMQKVWEDDSWLH"
     gene            complement(11923..12111)
                     /locus_tag="OQQ19_002707"
     CDS             complement(11923..12111)
                     /locus_tag="OQQ19_002707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804273.1"
                     /translation="MQDYFLESLKLQRIDFFLKLVAASECSDEEKGLALQWVSELTDE
                     LMAKIRTHEYNRSMDVIS"
     gene            complement(12265..14679)
                     /locus_tag="OQQ19_002708"
     CDS             complement(12265..14679)
                     /locus_tag="OQQ19_002708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000017528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication endonuclease"
                     /protein_id="HCS1804274.1"
                     /translation="MSHADMNNCCGFNEAAAAFSWNSPKKAINPYLDPAEVAPVSALS
                     NLITLYAADNEQEQLRREALSDQVWERYFFYESRDPVQHEMEQDKLISRAKLAHEQQR
                     FNPDMVILADVNAQPSHISKPLMQRIEYFSSLGRPKAYSRYLRETIKPCLERLEHVRD
                     SQLSASFRFMASHVGLDGLLILPEMSQDQVKRLSTLVAAHMSMCLDAACGDLYATDDV
                     KPEEIRKTWEKVAAETLRLDVIPPAFEQLRRKRNRRKPVPYELIPGSLARMLCADWWY
                     RKLWKMRCEWREEQLRAVCLVSKKASPYVSYEAVMHKREQRRKSLEFFRSHELVNEEG
                     DTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAEMRGDCAVFYTITCPSRFHSTLNN
                     GRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCF
                     MRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELINPRKGTPTSYIAKYISKNID
                     GRGLAGEISKETGKSLRDNAEYVNPWASLHRVQQFRFFGIPGRQAYRELRLLAGQAAR
                     QQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMRQGGVLVPRKYHLIRTAYEINEEP
                     TAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQGACAPWTRGNNCL
                     LAENLNQQEKDKSADGNPRTDITSMDDKELHDYLHSMSKKERRELAARLRLVKPKRRK
                     DYKQRITDHQRLQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGLRIFYRNQRLQEDD
                     QWRNLY"
     gene            complement(14676..>15313)
                     /locus_tag="OQQ19_002709"
     CDS             complement(14676..>15313)
                     /locus_tag="OQQ19_002709"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000104187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HCS1804275.1"
                     /translation="RVLFEIANREVAYYNIRQEFNYSTEITDFMKAVYFLYLNRHGYR
                     GLCRYNKSGHFNIPYGNYKNPYFPEKEIRAFAEKAQRATFICASFDETLAMLKAGDVV
                     YCDPPYDGTFSGYHTDGFTEDDQYHLASVLEHRSSEGHPVIVSNSDTSLIRSLYRNFT
                     HHYIKVKRSIGVAAGEGKSATEIIAVSGPRCWVGFDYSRGVDSSAVYGVRA"
BASE COUNT         3740 a         4139 c         3525 g         3909 t
ORIGIN      
        1 caattgaaaa caaataaaaa tcaagttagg tttttaatga acattctttc aattaactca
       61 atagattgga cattaaaacc taataactgc cttttcgcat agatggtata aatacctttt
      121 cgactgacgc gatcactcaa gccgtaatgg tgaatacggg caatgcgctg caccctacct
      181 tcaaactgta cgctggcaga atcggcgctg gctgcagttt tcaggtattt tgtggtgcgc
      241 agctttgtaa acatctgacg tttgatgcac ccctttttgc tgcgtgctgt taccctgcgc
      301 ggctcataac tgctgccatc aggattgcgc tgcatcctga tgttctgctg ctgtgtccgg
      361 cgcagttcct gcgccagctg gcgcatcatg cggcttcttg cggctggctc cagattcgcc
      421 aataatgcac tcagccagtc gtccaccttc tgcaattcag ccacgtttca ccgtccacat
      481 ttcttcaggt tcatcaggtt ccgctaccgc ttcaacgttc gacacactgc cgtcagtgct
      541 gaccagcaca cgctccgtca gttgcaggtt aaggctgata tcacagacat cgttgcgcag
      601 aatatccacc tcaaaggtga atagcttttc ccgtaacgcc gggttattga tcgcatcggg
      661 ctggttatcc cgcagccaca gcaaaaccgg ggccatcagc agattctggt cgccgctgaa
      721 atcttcaatc accacgttca gggtgtagcg gtactcccat gacatggagc tagccccgga
      781 ggcaaccagc gaaccgttat ccacaaacag atgcagtttg tccgggttat tacggacata
      841 aggcactgct ttattgaggg cgtggcgcag ggattgtggt ttgttcactg tttcgctcct
      901 gacacgcaat aatcatgtcc actttgtctg cacagaccgc ccaggcggcc tccgtttcat
      961 ccagcaacgc attcagatca ccgttagtgc gcggcgctgc ctgctccagc cgacacggcg
     1021 tcactcgcgg acaaccactg acggtaagct gcacctccgg tgagtgccgg acgttcccgc
     1081 agccggataa tgtcagcagg caaaggagta tcagcccagc gacgtaaatc ctcgttctca
     1141 cgtttcagtt cctcaatccg gcgttgtcgt tgtctcagca gtacactggt ctgttctgct
     1201 tcggcataga gccgcgcctg ctcccggtta ttggtttcag tcagaatgga caggctgata
     1261 agctggctgt tgctctttgc cagtgcctgg cttttgctct gcagctcgtc tgcctgcgtg
     1321 ctgatggtct ggctggcatc agccagccgc cacgtctgcc agcccagcgc cgccaataat
     1381 aacgccagca caaccagcag caaccggttc atgcggctac ctgttgcgcc atctgattat
     1441 gggtgatcca gaaggcaata acggtcagca gataaaagac cagggtaatg gcccaccccg
     1501 tccaggcgag actgacgaca atcagcaatc gtatcaccca gctgataaat acgttttctt
     1561 ttcgggtaat tgtcttcagt aaagatgccc tcaactcctg ccagagcggg ccattcttaa
     1621 ttaacgaagc cagtgctacc ggaattaccg cccatgtcag taaacaggct acccaaacgc
     1681 cggacgctgc cagtaccgga aaaatcccct gcggatacac cattgctgcg attaacagcg
     1741 ccatccataa catcagaaac agcccgctga ttaatttctt tttcatttca gtttgctccc
     1801 tgtaaacacc aggccatctc ccgcgcacgg cggttatcca gcccctgatt aaaaacacct
     1861 ttcacataaa cccagcgcgg caactgtcgg cacgcatccg cccagcgccg ctgattgagc
     1921 aatttcacca gcgtggaact gcaggcattg cccgtaccca cgttgaaggc aaacgacacc
     1981 gcagcgtcat acaccttctg cggcggctgt tgcttcacac acttttccag cgcccgctcc
     2041 acacgcagca cgttggagat cagcccttct gctgcctgtc gctccgtaat ggttttgccg
     2101 ggaatgacgc ccgacgtatt accaataccg tcggtccaga cacccgcgct gcactgatac
     2161 ggctgcagac gacaaccttc gtaatcggca atcagtttca gtccctccac ggaggtgtga
     2221 agctgctgaa aacccggcag cgtggcagca atagccagca cggccccgac aaggcagcgt
     2281 ttaacgattg atggattcat agtcctcccg cgagatctgc ccgtcgcgca gaagctggta
     2341 ggctttgtgt ttgtagtacc agttgatagc cagcatcagc acaccaatca tcaggccgcc
     2401 cagcgttgag gcatccttga tggacaaatc gcccagccag gccagcacga cggcgatgca
     2461 atacgtgata aaggcgctga ttcgctcaag cgtcataatt cagtcccata gctggacggt
     2521 ctgcacggtg gtggtggtcg gaatgtccgg cagctccacc tgcagcccgt gaggtaaaaa
     2581 ggggccgtat tcggcaagcc ccggatttgc cttcagtacc tgctccgtga caccctgcgt
     2641 gcgcccgtaa tgacgccagc aaagcgcgtc caccgtgtca tactgatgcg cacgcacttt
     2701 catcagataa gctccactgt gcagtgcggc gcgtcctgca cccggctgat ggcccagcgg
     2761 gcgtcacgcc acaaatcacc gcttgcttcc gccagttctt cgccccgctt cgcaccggat
     2821 gccgtggcgt catagtcctg gaaacgttcg ttgagcatgg cgcgagccca gcagtaaacc
     2881 gcgttgaaat agtgctgaat gcgctcactt ttcccgtcca gctgttccgc cggaacctca
     2941 gccagcgacg cataccccag catctgctgg cgtctgcgaa actcatacag ctctgcgtta
     3001 acctccgaaa ttgccgacag tgcaacctgc tttaaacgcg gctgcgtcac cgtgccgtca
     3061 gtgcgcatga cactgcgaaa ctccgacagg tccacatcag gccagaacgg cgtatttcta
     3121 atgatttccg cctgttccgg tgcctgttct ggcgcaacaa acttcatgct gctttctcct
     3181 gaaataaagg gcggtggacg gggttttgat gtggctgtgc ctttcgccac cccgtgccgc
     3241 ccgtgcgcgg gggcacgttc tgtcagcggc tgtcattgcg cagtctgcgc tccagctgct
     3301 gtttgtcttt tttcacgcca cagcggggat cgagctgtaa cgcatggttg agatgattaa
     3361 gggcggaagc cggattgctt tcactcagga ccgcgccaat cgctttatgc agacgtgccc
     3421 gtgactggtc cggcatatcc agaccgtctg tcagctccag cgtctgcagc aacagatcgg
     3481 catcaaagcc ggtggcggca agcattgcgc tctgcgctgc atctgccatt tcctctgtca
     3541 gcacggtctg cacgttgcgg ttgcccagcg gcatcaccca tccatgacgc agggcatgac
     3601 gcccgatctc cagcgccccg gcataatctc cggcatcaat gcgccacaac atcacgtaca
     3661 tcagcacgtc atcctgttga gcgcctccgg cagccaggac accctccgcc caggcggcgt
     3721 acttcggcag cagctccact ttgatttccg cttttttgac cgtggactga acgcccttga
     3781 gacggcggcg gtcttccgcc agttgcagca gcatcaggtc atagcccgat gcgtggcgaa
     3841 cactgccacc ctcacggacg gcctgttcag cctgaacgcg caggcgatgc tgccgtgcgg
     3901 gactcaggct catggattac gctccggttt cggctgcggc ggcgctgaaa tcactaatct
     3961 ggatgttttc caccagtgcg gcgcagcggt agtcctcaac cacataggct tcgttaacgg
     4021 attcaaagtt ttcaatccgg tcacgtttcg ggttgtcgat aactgaacgg cggcgggtgt
     4081 cttcctgcca gtagatggac aggttatcca gacgggtgat cagcagcgca ttcggcggga
     4141 agaacggcgc acgcacggcc tgcaggccac ccatgcgttt ctgactgatg atcatatcgg
     4201 cagccagttt ttcactgttt tcctgctctt tgttgaccag cgggaaatac ttgtcagaca
     4261 gcagttcacg accgcaaatc accaccagat cgtcatcgtc ctggtagacc acgtcgataa
     4321 gctcattgac ggcatccatc accacggcgt ccaggttggc atattcgcca cctttcccga
     4381 ctttcactgc gcccggtgtg gtttcaccgc ccgtggtggt gctgcccatg acgtgatccg
     4441 gtgcatcctc acggattttc tgcagccagc ctttattcac atcctgcagc agcgggtttt
     4501 cgctacggtt ggaggttttc gcacgcttca cgccattaaa gccgatcatg atgcggtcca
     4561 gtgcctgacg tttcacgatg gcgtcacgga tacgcacctg aaaatcctga aacttcgccc
     4621 acaggtccag cttcgcgtag gtcagcaccg tgtcaaagtt ggtctgctcg catttatatt
     4681 ccacatcgac catcagcgtc ggatcgacag gttcacgctc tttcgcagtg gtatcagtgg
     4741 ttccggcaat ggtgctgcca actcccaacc ccagcagctg accggactgc tcagtcactg
     4801 gcgtgacgtt aatcagagtc aggaaagcgg cggactgctg gatctggtct tccagcgtct
     4861 gctgcacgga cggctctacg gtgaacttgc tggacagttc ttcaactgcc acaccgttca
     4921 gacgcgccag ttgctgcagg taagcgttaa aagcaaagcg ggtattcttc ttcatcaggt
     4981 tttgtgctcc atcagcaatt ggtcagagtg tcagcggggg cgttaccgcc tgttgcacgc
     5041 tggcggtagt cctggcggct gtcttcatga ctcagcttgt ccaccagttc gttaaaggcg
     5101 gtttgctgtg cctgcagggc agtctccagc tcagacaggc gttcttcctg ctcagacagg
     5161 gatttttcgg tgcgtgcgct caggttctgc tgctcagtgg cgaccagctc cacggcctta
     5221 tgcacatcag agaaccgggc gtcatcggac tgctcttttt tggtaaacag cgccgtgacg
     5281 cgggcaaaca gggacggttt gtcgtcctgg acttcttcca gttcgatcac cgtttcctct
     5341 gcggcggtaa agagattggc gggattctgc ttgcggtttg ccagcgggtt atgggctgca
     5401 ctggcgctga atgtcagcat ttcagtgccc agactggcag ggtcatcagt ggcagccagg
     5461 ccgactaggt aggctttgcc cgtatcagcg aacttcgggc tgacttccat aaaggtgaat
     5521 aatttctggc cttttttcac cagttccacc agggactccg ttggctcaac gtcagcatac
     5581 agcgccatct tgcctgccag cggaccttcc gtgatttctt cagcaaacag cgccgtcacc
     5641 ttgccgtagc ggttaaaggt gctgtccggc agataagact tgatgtgctc aaggttaatc
     5701 agcgcggtat acaccgccgg gttatagctg gctgccatct gttccagcca ttcacgctgg
     5761 atttcgcgtc cgtcggtggt ggcaccttcc accccgatgc gaaaacgctt tgctttcact
     5821 gtcatgagcc gtgctccgtt agaaaaaact tactggagcc ttatggttgc ggtgataggg
     5881 gcagtgaaac aatgcgcggt atttgtaccg acaaccacac aaaccgcagg cggggaaagc
     5941 cttcattcaa ggctgtaggt ttgtgccatg aacaccacac tgacacccgc agatctcgat
     6001 ccccgtcggc aggccatgct gctgtacttt cagggatacc gcgtagcccg cattgctgaa
     6061 atgctgggcg agaaagttgc aaccgttcac agctggaaaa aacgcgacaa gtggggtgac
     6121 tatgggcctc tggatcagat gcagctcacc accgccgcac gctactgcca gctcatcatg
     6181 aaggagcaca aagaagggaa agatttcaaa gagattgacc tgctggcgcg ccagtctgag
     6241 cgccacgcgc ggatcggcaa gtttaacaat ggcggcaacg aagccgactt aaaccctaac
     6301 gtcgccaacc gcaacaaagg cccacgccgt cagcctgaaa agaatgtttt caccgatgac
     6361 cagattgaga agctggaaaa aattttccat tcctccatgt tcaactacca gcgccactgg
     6421 tgggaagccg gaaaaaccaa ccgcatccgc aacctgctga agtcacgcca gatcggcgcg
     6481 accttctatt ttgcccgtga agccctgatt gacgccctgc ttaccggacg taaccagatt
     6541 ttcctttctg ccagtaaggc acaggcccac gtcttcaaac agtacatcat cgactttgcc
     6601 aaagaagtgg aggtggagct gaaaggcgat ccgatggtgc ttcccaacgg ggccacactg
     6661 tatttcctcg gcaccaatgc ccgcactgcc cagagttatc acggtaacct gtatctggat
     6721 gaatatttct ggataccgaa atttcaggag ctacgcaaag tggcttccgg tatggctatt
     6781 cacaagaaat ggcggcagac ctatttttcc acaccatcca gtctgaccca cagtgcttat
     6841 ccgttctggt ccggtgcgct gttcaaccgt gggcgcaaca aagctgacaa ggtggacatc
     6901 gacctgtccc acagcaatct ggcccccggc cggctgtgcg cagacgggca ataccgccag
     6961 atagtcaccg tggaagatgc ggtgcgcggc gcctgtaacc tgttcgacct tgaccagttg
     7021 cgcatggagt acagccctga cgaataccag aacctgctga tgtgcgagtt cgtggacgat
     7081 ctcgcgtccg tgttcccgct cagcgaattg caggcgtgca tggtggacag ctgggaagtc
     7141 tggaccgact ttcatgcact ggccctgcgc ccgtttggct ggcgcgaagt gtggatcggt
     7201 tatgacccgg caaaaggtac gcagaacggc gacagcgccg gatgcgtggt ggtggcaccg
     7261 ccagccgtgc caggcggtaa gttccgcatt cttgagcgtc accagtggcg cggaatggac
     7321 tttcgcgccc aggctgacgc catcaaaaaa ctgactgaac agtacaacgt gacctatatc
     7381 ggcatcgact caaccggcgt tggtcacggg gtttacgaga acgtgaaagc gttttttcct
     7441 gccgtccggg agtttgtcta caaccccaac gttaaaaacg ccctggtact caaggcctac
     7501 gacattatca gccaccgccg tcttgagttt gacgccgggc acaccgacat tgcgcagtca
     7561 ttcatggcaa tccgtcgcgc caccaccgcc agcggcaacc gcccgaccta tgaagccagc
     7621 cgcagcgaag aagccagcca tgccgatctg gcctgggcaa caatgcacgc actgtttaac
     7681 gaaccgctgc agggcgagtc cgccaatacc agcaatattg tggagatttt ttgatgggaa
     7741 agagtaagaa gaaccgcgct gcggcgacga aacagaccca gcataaaaac cagacttcag
     7801 ccgaagcatt cagcttcggc gatcccgttc cggttctgga ccgccgtgaa ctactggact
     7861 atgtggaatg cgtacagaca gatcgctggt atgagccgcc agtgagtttt gacggactgg
     7921 cgcgcacctt ccgcgccgcc gtgcatcaca gttcaccaat tgcggtgaaa tgcaacattc
     7981 tgatcagtac ctacatccct cacccgctgc tcagccagca ggctttttca cgttttgtgc
     8041 aggattatct ggtatttggt aacgcttacc tggagaaacg cacaaaccgg ttcggagagg
     8101 tcatcgctct tgagcctgct ctggcaaaat acacccgacg cggattagac ctggatacct
     8161 actggtttgt gcaatacggc atgaccacgc agccgtatca gttcacgaaa ggaagcatct
     8221 ttcatctgat ggaaccggac atcaaccaag agatctacgg cctgccaggt tacctttctg
     8281 ccattccgtc agccctgctc aacgagtccg ccacgctgtt ccgccgatag tattacatta
     8341 acggcagtca tgcaggcttc atcatgtaca tgaccgatgc cgcgcaaaac caggaggatg
     8401 tgaacaacct ccgcaatgcg atgaaaagcg ccaaaggacc aggtaacttc cgcaatctgt
     8461 ttatgtactc gcctaacggc aaaaaggacg ggcttcagat catcccgttg tcagaagtcg
     8521 cggcgaagga tgagtttctg aacatcaaga acgtgagccg ggatgacatg atggcggcgc
     8581 atcgtgtgcc accgcaaatg atggggatta tgcctaataa tgtcgggggg tttggggatg
     8641 tggagaaggc gagcctggag tttgtacgta acgagttaat accgttacaa aaaagaatga
     8701 tggaaataaa taaattggta agtgagaaca ttgttaaatt tgatagttat aaactagcta
     8761 cttaacgtaa tcactaaatg aggttcttta acacagctaa aaaatttatt aatagccagc
     8821 agtttttatg aatttcttca gcgtgcagat acacgctgaa gatgcaaaaa atcatatgag
     8881 acgaccgtct ggacttctgt tacctaaatg taattcacag agtatccacc taatcacatc
     8941 aggtcgaatt aacccagcta caaaaaccga attccaatta tttttacctt tatgtttttc
     9001 atccaacagc aacaactcgc gagtcaacaa ctcatataca tcgctataag tagaaagact
     9061 cttattcagt cctctaataa caagctcagg atataagtaa aacgactccc attgttcaga
     9121 caaatacccc ttaatattat tcttgataac aacattatca agatgatact taacattgtt
     9181 atattctggt gacattgggt caattatgat ttttacatca attgtaggtg ttcgccctaa
     9241 tttagaaaaa ttagcacata ttaatctttg ttttaatata ttatcaaaat atggatgcag
     9301 catccgatgg cctgcagaat tagctatagt agtacttttg aaagtattac atttgcaagc
     9361 aggaaccaaa ttcttagtga ataaagaaaa ttctggatag ttttccttgg gtaaaacatg
     9421 atccaaagtc ccgctatgca ttgaaccaca cattggacat agagagttag aattagctgc
     9481 tcttatatca tcaattatag ataaacactt tgcgggattg ttataataat atctcaaagc
     9541 ttcagcaata ttgttactca atacgccaca agaattgaca ttaagatacc ctttattctt
     9601 tatgtacgat ctatatgcat taagtataaa tgtatcctgt ccattcagaa cagaatgatg
     9661 ttttaatctc ttatttgcag atagtttttt aaatgcagaa taatctttaa aaacaggtct
     9721 ttttaattta ttcatttcaa ttgcccattt catttctcaa cgcagttaat acattaagtg
     9781 ataagtcctc gctatattta gattcaacat catcccaaga catattcttt gcaattatat
     9841 tgttttttac tttatttaaa atttgagttg gttcactctc accgaaaaca aaatatgaga
     9901 tatttcctat attcgcccca aaagtactca atctcggttt ttcgctaaca attaccccat
     9961 catctcgtct tctgagtatt gtcacttgct ccttaaaaac ctcccgaaca agataaaccg
    10021 aatgcgttgc tatgatagct gaagagcctg tcttttctaa taaattatca agcaatgcca
    10081 taaatttatt aataaatgaa ggatggagat gtgtttctgg ctcatctatt aatagaagag
    10141 tcccattctc aatatacaaa cagacttgta cacaaaactt aataaacgat atttccccac
    10201 tactcaaagg gtaacattta ttttcaataa gcctcaaagg ctcgccagag agaataattt
    10261 cagaatataa tgatagtcta gattcttcgc ctcgagaatt aagctcattt aatttaacaa
    10321 atggtgaatt ttcaccgcca catttgatta ctaaatcgtt gttactattt agaacactca
    10381 gtgcatcaac aaatatattc cacctttgat tatagccgat agcgtcgtta ctcctcgcta
    10441 gttgcactat taaatcattc aagtttaatt tggattttga ttcacgattt aaagtcaatc
    10501 ttttgtacca tatcaatgat tttattcttt tatcggttgg aaatgaacac ttactttcat
    10561 ttgttggaga aaaagcaatg agcctactaa tttgaattcg ttcttcaatg ctcacaccgt
    10621 tagaatcaac tacagccacc aaattatcct ttcctttaat cgcagccaat gcgatttctc
    10681 taagcgtttg gctttttcct acaccattct cgcctataat tatggaaatt ctttttggta
    10741 aatcatgctc gtgatcaaaa ttaaaaacat aagatacatc ttcttcatta actttattcg
    10801 aatagctaat cttgatgtgc tgtgataaat tacccaactc ctcatattga ataccggaaa
    10861 gaactgttcc tgcatttttg aaagtaaaat acgactcaga ctctctaatg aaagatttat
    10921 taaagatatc agaagagatt gcttttttcc tcaaattctc tgcactagcg tcacttttct
    10981 tagaaacaac atcattaatg aaatttaata tatatttgga ttcattcacc ccaaaaaatc
    11041 ttactagtct tcgataatta ttcatatcct gaagcatgac aaaataatca ttaaacccct
    11101 catcctttaa attagattct tcctttttct tcactcgcct tatcagttct gcttttccat
    11161 ttcgttcctc ctctgaattc aaaaaaccaa tataaccatt cagtgaaatt atatccttac
    11221 actctttttt attaaaaata gatatttcga ctctactcaa atatccaaaa tcattccaat
    11281 cgcttcttga tgggactatt tttatataat taccagaatc agatatctgt tgattatttg
    11341 taattaaaaa atataaacta taatttttat ttttcttgac taacattatt accctctcac
    11401 ttcattagtg atgatttatt ttggaattat tttacacact tatacctagc gcgcaatcgt
    11461 atccccgcca cgcctgcccg ctttatgtag aggttttcat gcacctgcat gatctacgca
    11521 aaagcccgcc agttctggcg ggccttagca aaaacgatcc tcaaacgatc atgcgatctc
    11581 atgcggcata gacatgcact acagagctaa cgcctcgcaa gggctcgttg ttcaaccttg
    11641 ctgacgccag aagctagttc agacgccagc aacgtttctt aatgcagcca gctgtcgtct
    11701 tcccacacct tctgcataat tttcatcact tgttttcttt cttcgtccag ttgcaatcca
    11761 gtaagttcca caccgttaga gctacctttg cggatacgaa ttaccgtttt gggatacaga
    11821 gggcgcagat tgcggtaaag ctcggattca agagcgtcca gggtagactg gctaatcttc
    11881 tgctctttat cgatcattat ttcaatgcgc ataaaagtca cctcagctga tgacatccat
    11941 tgagcggttg tattcgtggg ttctgatttt tgccatgagt tcatcagtca attcagaaac
    12001 ccactgcaga gccagcccct tctcttcatc actacactca ctagccgcta caagcttaag
    12061 aaaaaaatca atgcgctgga gcttcaaaga ctccaaaaaa tagtcctgca tctttcctcc
    12121 tatgacacca cacgcaatac tgtatgcata accactgttt atatttacag catataataa
    12181 tcttactgat gtaaaacgtt tttttacgtt catcagcctg atatgcctgg tattattaag
    12241 agcacgaatt gttaacccgc gtaattaata caggttccgc cactgatcat cttcctgcaa
    12301 acgctggttc cgatagaaga tacgcaggcc tgctcctgac ggaatactgc ctccgcgaag
    12361 gagtaaatcg acctctttct cgctgccatc aaatcctctg gacttcagct catacacgag
    12421 ctgcagtcgc tgatggtctg taattcgctg tttgtagtct ttacgccgtt tcggtttcac
    12481 caggcgtaac cttgctgcca gttcccggcg ctcttttttg ctcatactgt gcaggtaatc
    12541 gtgcaactcc ttgtcatcca tgctggtaat gtccgttctg gggttcccat cagctgattt
    12601 atctttctcc tgttggttca aattttcagc aaggagacag ttattgccac gagtccaagg
    12661 ggcgcaagcg ccctggtcgg ctgccgcctc ctgaacgtca acggctttac gaaccatttt
    12721 ccacttcact gcatgagtgc agatcttgcc ttctgcaatg ggtgaccaga tgccataaat
    12781 acgaataccg tgatcgccat aggcggtcgg ctcttcattg atttcataag cggttctgat
    12841 caagtgatat ttgcgaggaa ccagcacgcc gccctgcctc ataatgtagg tggcaaaaca
    12901 gccagcatca gcagcagcca ggatggcatc aaggcgcggg ttatccagta ccggcgcacc
    12961 tgcttttttg tcaccctgct gccttgccgc ctgaccagcc aacaaccgca gttcacggta
    13021 agcctgacgc cctggaatac caaagaagcg gaattgctga acacgatgca gagacgccca
    13081 gggattaacg tattcagcgt tatcacgcag ggatttaccc gtttccttgc tgatctcgcc
    13141 agccagacca cgcccgtcaa tgttcttact gatgtatttc gcgatgtagc ttgtcggcgt
    13201 tcctttgcgc gggtttatca gctcagattt aaagcgtgga ccagtgttat tacccagttc
    13261 ctcgcggtct tcacggatgg caaacttacg caacaatgca gtaatggcgc ggcggtcttt
    13321 tttgcgcata aaacacaaca ggtgccagtg aactgtaccg tcatgatgcg gctcagccac
    13381 ccgcacgcca taccagcgca acccggcttt gtgcatcgcc ttacgaaatg cagcaaacat
    13441 gccgaccaga taatcgctgc tttgtcttac cgtcgcattt gtccaggttg ggtttggtct
    13501 gccgttattg agcgtggaat ggaaacgtga cggacaggta atggtgtaga aaacggcgca
    13561 gtcaccgcgc atttccgcga taagctccag acctttaaca caggccatca tctcattgcg
    13621 gcggtgcgcc gggttgctgc tgctggcgtt taccacgtct tccatatcca gcgtgtcgcc
    13681 ctcttcgttc accagttcat gagaacggaa aaactccaat gacttgcggc gctgctcacg
    13741 tttatgcatc acggcttcat agctgacata gggagatgct tttttgctga ccaggcagac
    13801 agcacgcaac tgctcttccc gccattcgca acgcattttc cataatttcc ggtaccacca
    13861 gtcggcgcac aacatacgcg ccagcgaacc cggaatgagt tcatagggca cgggtttacg
    13921 gcggtttctt ttccgacgga gttgctcaaa cgcaggcggg atgacatcca gacgcagggt
    13981 ttccgctgcc accttttccc atgtcttgcg gatttcttct ggcttaacgt catcggtggc
    14041 atacaaatca ccacaagctg catcaaggca catgctcata tgcgcagcga caagggtaga
    14101 caggcgtttc acctgatcct gactcatttc aggcagaatc agcaggccgt ccagccctac
    14161 atggcttgcc ataaaacgaa aagatgcaga tagctggctg tcgcgtacat gctccagtcg
    14221 ttccagacat ggcttaatcg tctcacgtaa atagcgggaa taagcctttg gcctgcccag
    14281 gctgctgaag tattcaatac gttgcatcag cggcttgctg atatgggaag gctgggcgtt
    14341 gacgtccgcc agaatgacca tatccggatt aaaacgctgc tgctcatgcg ccagctttgc
    14401 ccggctaatg agcttatcct gctccatttc gtgctggaca ggatcacgtg attcataaaa
    14461 aaaataacgc tcccagacct gatcactcag tgcctcgcgg cgcaactgtt cctgctcgtt
    14521 atcggcagcg tacagagtga tcaggtttga aagcgcagaa accggcgcaa cttccgccgg
    14581 gtccagataa gggttaatgg cctttttcgg gctgttccat gagaacgctg cggcagcctc
    14641 gttaaagccg cagcagttgt tcatatcggc atggctcatg cacgtactcc gtacacggca
    14701 gaactatcca cgccacgcga ataatcaaat cccacccagc agcgcggccc ggaaacagca
    14761 atgatttctg ttgctgattt accctcgcca gctgccacac cgatgctgcg ttttaccttg
    14821 atatagtggt gagtaaaatt gcgatacagc gaacggatca gggatgtgtc actgttagaa
    14881 acaatgaccg gatgtccttc tgatgaccga tgttcaagaa cggatgctag gtgatactgg
    14941 tcatcttcag tgaaaccatc agtgtgatag ccggaaaacg taccgtcata cggtggatcg
    15001 caatacacca catcccccgc cttcaacatc gccagcgttt catcaaagct ggcgcagata
    15061 aacgttgctc gctgggcttt ttctgcaaat gcgcgaattt ctttttcagg gaaatacgga
    15121 tttttataat tgccgtaggg aatgttgaaa tgcccgctct tgttatagcg acataaacca
    15181 cggtaaccgt gacgattgag atacaggaaa tataccgctt tcatgaaatc agtaatttca
    15241 gttgagtaat taaactcctg ccttatgttg taataagcca cctccctgtt tgcgatctca
    15301 aataaaactc tgg
//
LOCUS       DAJVSY010000098        15120 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.098, whole genome shotgun sequence.
ACCESSION   DAJVSY010000098 DAJVSY010000000
VERSION     DAJVSY010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15120)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15120)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15120
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.098"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..421
                     /locus_tag="OQQ19_002710"
     CDS             <1..421
                     /locus_tag="OQQ19_002710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HCS1804276.1"
                     /translation="LMNNSDARKTSALLFLDGDNFKYINDTWGHATGDRVLIEIAKRL
                     AEFGGLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIFNLPFDLHNGHQTTMTL
                     SIGYAMTIEHASAEKLQELADHNMYQAKHQRAEKLVR"
     gene            437..919
                     /locus_tag="OQQ19_002711"
     CDS             437..919
                     /locus_tag="OQQ19_002711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HCS1804277.1"
                     /translation="MIKHLVAPLIFTSLILTGCQSPQGKFTPEQVAAMQSYGFTESAG
                     DWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNE
                     GLSLKRANVVADAWAIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP
                     "
     gene            complement(996..1343)
                     /gene="rplS"
                     /locus_tag="OQQ19_002712"
     CDS             complement(996..1343)
                     /gene="rplS"
                     /locus_tag="OQQ19_002712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012768745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HCS1804278.1"
                     /translation="MSNIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFE
                     GVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRE
                     RTGKAARIKERLN"
     gene            complement(1385..2152)
                     /gene="trmD"
                     /locus_tag="OQQ19_002713"
     CDS             complement(1385..2152)
                     /gene="trmD"
                     /locus_tag="OQQ19_002713"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HCS1804279.1"
                     /translation="MWIGIISLFPEMFRAITDYGVTGRAVKNGLLSIQSWSPRDFTHD
                     RHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSEL
                     ATNQKLILVCGRYEGIDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVSRFIPGVL
                     GHEASATEDSFAEGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWL
                     RRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA"
     gene            complement(2183..2731)
                     /gene="rimM"
                     /locus_tag="OQQ19_002714"
     CDS             complement(2183..2731)
                     /gene="rimM"
                     /locus_tag="OQQ19_002714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HCS1804280.1"
                     /translation="MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY
                     QPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLE
                     EGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLD
                     GQVIKKVDLTTRSIEVDWDPGF"
     gene            complement(2750..2998)
                     /gene="rpsP"
                     /locus_tag="OQQ19_002715"
     CDS             complement(2750..2998)
                     /gene="rpsP"
                     /locus_tag="OQQ19_002715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000256453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HCS1804281.1"
                     /translation="MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIAS
                     EKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNKAA"
     gene            complement(3135..4496)
                     /gene="ffh"
                     /locus_tag="OQQ19_002716"
     CDS             complement(3135..4496)
                     /gene="ffh"
                     /locus_tag="OQQ19_002716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HCS1804282.1"
                     /translation="MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVA
                     LPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAV
                     VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF
                     PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETL
                     FVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVG
                     EKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDF
                     LEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPE
                     IIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGF
                     PGR"
     gene            4663..5454
                     /locus_tag="OQQ19_002717"
     CDS             4663..5454
                     /locus_tag="OQQ19_002717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417102.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YpjD"
                     /protein_id="HCS1804283.1"
                     /translation="MPVFALLALVAYSVSLALIVPGLLQKNGGWRRMAIISAVIALVC
                     HAIALEARILPDGDSGQNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALI
                     NLALATFMPNEYITHLEATPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKL
                     AFNQEMPPLMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWF
                     VYIVLLWGHYHEGWRGRRVVWFNVAGAVILTLAYFGSRIVQQLIS"
     gene            5475..6761
                     /locus_tag="OQQ19_002718"
     CDS             5475..6761
                     /locus_tag="OQQ19_002718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026171.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HCS1804284.1"
                     /translation="MEHISTTTLIIILIIMVVISAYFSGSETGMMTLNRYRLRHMAKQ
                     GNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLT
                     FVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNAITRMLMRMMGIK
                     TDIVVSGSLSKEELRTIVHESRSQISRRNQDMLLSVLDLEKMTVDDIMVPRSEIIGID
                     INDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKETMLRAA
                     DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMS
                     PTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGT
                     RVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE"
     gene            complement(6816..7409)
                     /gene="grpE"
                     /locus_tag="OQQ19_002719"
     CDS             complement(6816..7409)
                     /gene="grpE"
                     /locus_tag="OQQ19_002719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HCS1804285.1"
                     /translation="MSSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKI
                     ANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSL
                     DRALEVADKANPDMSAMVEGIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMV
                     ESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAKA"
     gene            7532..8410
                     /gene="nadK"
                     /locus_tag="OQQ19_002720"
     CDS             7532..8410
                     /gene="nadK"
                     /locus_tag="OQQ19_002720"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020239499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HCS1804286.1"
                     /translation="MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCKKGYEVIVEQQIA
                     HELQLKNVKTGTLAEIGQLADLAVVVGGDGNMLGAARTLARYDIKVIGINRGNLGFLT
                     DLDPDNAQQQLADVLEGHYISEKRFLLEAQVCQQDCQKRISTAINEVVLHPGKVAHMI
                     EFEVYIDEIFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSA
                     RPLVINSSSTIRLRFSHRRNDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYS
                     YFNTLSTKLGWSKKLF"
     gene            8496..10157
                     /gene="recN"
                     /locus_tag="OQQ19_002721"
     CDS             8496..10157
                     /gene="recN"
                     /locus_tag="OQQ19_002721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HCS1804287.1"
                     /translation="MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGL
                     CLGGRAEADMVRTGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGR
                     SRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
                     ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLA
                     NSGQLLTTSQNALALMAYGEDANLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQ
                     IAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPEALPQYYQSLLEEQQ
                     QLDDQADSQETLALAVTKHHQQALEIARALHQQRQQYAEELAQLITDSMHALSMPHGQ
                     FTIDVKFDEHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALATQVITARK
                     METPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHYFVSKE
                     TDGAMTETHMQSLNKKARLQELARLLGGSEVTRNTLANAKELLAA"
     gene            10306..10647
                     /gene="bamE"
                     /locus_tag="OQQ19_002722"
     CDS             10306..10647
                     /gene="bamE"
                     /locus_tag="OQQ19_002722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417107.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HCS1804288.1"
                     /translation="MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVS
                     KIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLT
                     NIDNKPALSGN"
     gene            complement(10709..10999)
                     /locus_tag="OQQ19_002723"
     CDS             complement(10709..10999)
                     /locus_tag="OQQ19_002723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417108.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HCS1804289.1"
                     /translation="MPGKIAVEVAYALPEKQYLQRVTLQEGATVEEAIRASGLLELRT
                     DIDLTKNKVGIYSRPAKLSDSVHDGDRVEIYRPLIADPKELRRQRAEKSANK"
     gene            complement(10989..11426)
                     /gene="ratA"
                     /locus_tag="OQQ19_002724"
     CDS             complement(10989..11426)
                     /gene="ratA"
                     /locus_tag="OQQ19_002724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010376629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system toxin RatA"
                     /protein_id="HCS1804290.1"
                     /translation="MPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTP
                     GQMTAAVDVSKAGISKTFTTRNQLTSNQSILMNLVDGPFKKLIGGWKFTPLSQEACRI
                     EFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKEVYSAR"
     gene            11597..12079
                     /gene="smpB"
                     /locus_tag="OQQ19_002725"
     CDS             11597..12079
                     /gene="smpB"
                     /locus_tag="OQQ19_002725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HCS1804291.1"
                     /translation="MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSL
                     RAGKANISDSYVLLRDGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYG
                     RVNREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR
                     "
     gene            12294..12656
                     /gene="ssrA"
                     /locus_tag="OQQ19_002726"
     tmRNA           12294..12656
                     /gene="ssrA"
                     /locus_tag="OQQ19_002726"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(12817..15120)
                     /locus_tag="OQQ19_002727"
                     /pseudo
     CDS             complement(12817..15120)
                     /locus_tag="OQQ19_002727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311542.2"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AIDA repeat-containing protein"
BASE COUNT         3708 a         4061 c         3545 g         3806 t
ORIGIN      
        1 gttgatgaac aattccgatg cccgaaaaac gtcggcgtta ctatttcttg atggcgataa
       61 tttcaaatat atcaatgata cctggggtca tgcgacgggc gatagggtct tgattgaaat
      121 cgcaaaacgg ttagctgaat ttggcgggct gcgacataaa gcataccgcc tgggcggcga
      181 tgaattcgct atggtgctct atgatgtaca gtcggaatct gaagtgcaac agatatgctc
      241 agcactgaca caaatcttta atctcccgtt tgatcttcat aatggccatc agaccaccat
      301 gacattaagc attggttacg cgatgaccat tgagcacgcc tctgcggaaa aattacaaga
      361 gcttgccgat cacaatatgt atcaggccaa acaccagcgt gccgaaaagc tggtgagata
      421 acaaggatat atcgatatga taaagcacct ggtagccccc ctgattttca cctcactaat
      481 actgactggc tgccagtccc ctcagggaaa gtttactcct gagcaagtcg ccgctatgca
      541 atcttatgga tttactgaat ccgccggcga ctggtcgctg ggcttatcag atgccattct
      601 gttcgcaaaa aatgactaca aattgctccc ggaaagccag caacagatcc aaaccatggc
      661 agccaaattg gcctcgacag ggctaacaca tgcccgtatg gatggacaca ccgataacta
      721 tggtgaagac agttacaacg aaggcttatc attgaaacgg gcgaatgtcg tggccgatgc
      781 atgggctatt ggtggacaaa ttccacgcag caatctcacc acacagggtt taggaaaaaa
      841 atatcccata gccagtaaca agaccgccca gggccgcgcc gagaaccgcc gcgtcgcagt
      901 ggtgattaca accccttaaa acacgagcaa acagacaaaa aaagggccag ccaattggcc
      961 agcccttctt aacaggatgt cgcttaagcg aaatcttagt taagacgctc tttgatacga
     1021 gcagccttac cagtacgctc acgcaggtag tacagtttag ctttacgaac agcaccacga
     1081 cgtttgacag aaatgctgtc aactaccgga gagtgagtct ggaagacacg ctcaacgcct
     1141 tcgccgttgg aaattttacg aacagtgaat gcagagtgca gaccgcggtt acgaatagcg
     1201 ataaccacgc cctcgaatgc ctgcagacgt tttttggaac cttcaacaac ccatactttc
     1261 acttccacgg tatcacccgg acggaaggaa ggtacgtcct gcttcatctg ctcttgttca
     1321 agttgcttaa taatgttgct cataatttaa tctcttatcc tgggtaaact gatatctcgg
     1381 gggcttacgc catcccatca tgtttatgtt gctgttgtgc gtgttccgtt ttgaactccg
     1441 ccagcaacct tgcttgctct tcagtcagag ccaggttttc cagaagttca ggtcttctaa
     1501 gccaggtacg gcccagcgac tgtttcaaac gccagcgacg tatctcggca tggttgcccg
     1561 acagtaacac tggcggaact tccatccctt ctaacacctc aggccgcgta tagtgcgggc
     1621 aatccagcaa tccttcagca aaggaatctt ccgttgccga ggcttcatgt cccagtaccc
     1681 ccggaataaa ccgggaaacg gagtcaatca gcgtcattgc tggtaactca ccaccactga
     1741 gaacgtaatc gccgattgac cattcttcgt caatttcggt ttggatcacg cgctcatcta
     1801 taccttcgta gcgaccgcac accagaatca atttttgatt cgttgccaat tcgctgacgc
     1861 ccgcttgatc aagcttgcgt ccctgtggtg acagataaat cacctttgcg ccttcacccg
     1921 ccgcggcttt tgctgcatga atggcgtccc gcaagggttg caccatcatt aacatccccg
     1981 gtccgccgcc gtaaggacga tcgtccacgg tacggtgccg gtcatgcgtg aagtcgcgag
     2041 gactccagct ctggatgctc agcaggccat ttttaactgc ccggccagtt accccgtaat
     2101 cggtaattgc gcggaacatt tcaggaaaca ggctaattat gccaatccac atagcgccgt
     2161 cttttaccgt ttatccggtg gtttaaaaac caggatccca atctacttcg attgaacgag
     2221 tagtgagatc gactttcttg ataacctgcc catcgaggaa cggtacgaga cgttccttga
     2281 taccaaacgc atctttcagg tttgccttaa tgacgagaac gtcattagat ccggtttcca
     2341 tcatatcgac gactttaccg agatcgtagc cttcagtggt tactacctgg cagcccatca
     2401 ggtctttcca gtagtagtca ccctcttcaa gctgaggcaa ctgcgatgaa tccacgacaa
     2461 tttcacaatt cgtcagcagg ttcgccgcat cacgatcgtc aacgcctttc agcttgatga
     2521 tcatgtcctg attgtggtgc ttccagcttt ccagctggac ttgctgccac tgacccgcct
     2581 tctggataaa ccagggctga tagtcaaaaa tgctttcggc gtcttcggtg gaagaaaaca
     2641 ctctgagcca cccacgaata ccgtaagacg aacccatttt tcccaaaacg atgggatcaa
     2701 caggtgcttg cgcggtgagt tgtttgctca tcatgaccac cgtgacagat taagctgctt
     2761 tgtttacttc tttgatcagc gcagcaacgc gatcagaaat agttgcgccc tggccaaccc
     2821 agtgagcgat gcgatccaga tccaggcgag tgccttcttc tttttcgcta gcgattgggt
     2881 tgaagaaacc aacgcgctcg atgaagcgac cgttgcgtgc attacggctg tcagcgacaa
     2941 caacctggta gaacggacgc tttttagcgc cgtgacgtgc taaacgaata gttaccataa
     3001 catcctcttg tgtgaataaa acaaccggac cccatcgagg aacggagtcc ggtgtcatat
     3061 taaaagcccg aaaattttac tgatttctgg agaaaatgca atcagcagtt aataactctg
     3121 tcgcataagg tcatttagcg accaggaaat cccggcggca tcatcccctt catgcttctc
     3181 atcatcttcg ccattccgcc cttcttcatt ttcttcatca tgcgctgcat gtcgtcgaac
     3241 tgtttcagaa gacggttaac gtcctgcacc tgcataccgc aaccggcagc aatacggcgt
     3301 ttacgcgaac ctttgatgat ttctggctta gcgcgctctt tcatcgtcat cgagttgatg
     3361 atggcttcca tacgcaccag cactttatcg tccatctgtg acttgacgtt atccgggatc
     3421 tgccccatgc ccggcagctt gcccatcagg ctggccatgc cgcccatatt tttcatctgg
     3481 cgcagctgct caagaaagtc gttgagatcg aagccgtcac cttttttcag cttgctggct
     3541 aatttctctg cctgcgcgcg gtcaactttg ctttcgatat cttcgatcag cgacagtacg
     3601 tcgcccatgc cgagaatacg cgacgcgatg cggtccggat ggaacggctc cagcgcctca
     3661 gttttctcgc caacaccgag gaacttgatc ggtttgccag tgatgtgacg aatagagagc
     3721 gccgcaccgc cgcgggcatc gccgtccact ttggtcaaca ctacgccggt aagcggtaac
     3781 gcttcattga atgcttttgc cgtattggcc gcatcctgac cggtcatggc gtcaaccaca
     3841 aacagggttt caaccgggtt aatcgacgca tggacttgtt tgatctcgtc catcatcgct
     3901 tcgtcaacgt gcagacgacc agcggtatcc accagcagca cgtcgtagaa tttcagtttg
     3961 gcttctttca gcgccgcgtt aacgatatct accggcttct gaccaacatc agaagggaag
     4021 aaatcaacgc ccacctgctc tgccagcgtc tcaagctgtt tgattgccgc cgggcgataa
     4081 acgtcggcag aaaccaccag cactttcttc ttgtgcttct cgcgcaggaa cttaccgagt
     4141 ttaccaacgc tggttgtttt accggcacct tgcaggcccg ccatcagcac gaccgcaggc
     4201 ggttgcgccg ccaggttcag ggtctggttc tcttcgccca tcgccgcaac cagttcgtta
     4261 cggacgattt tgacgaactc ctgccccggc gtcaggctct tattaacttc atgaccaacc
     4321 gctttctctt ttacgcgatt gataaactca cgcactaccg gcagagcgac atccgcctcc
     4381 agcagcgcca tgcgcacttc gcgcagcgta tcttttacgt tgtcttcagt taggcgtcca
     4441 cggccactga tattgcgcag cgtgcgcgac aaacgatcgg ttaaattatc aaacattgtc
     4501 tctcgcctgg ggtggaaacg gttggccgca atcgcgacac atcatcagta ttttgccgca
     4561 gtataacatg aaggcgtctt tgttgttatg caacggttgg agcagcgttc acctgacgct
     4621 atactgcttc tctttcttat tgctcaaact gttgacatca ctatgcccgt ttttgctctg
     4681 ctcgcgcttg tcgcctactc cgtcagtctt gcgctgattg ttcccggtct gctgcaaaaa
     4741 aacggcggct ggcggcgcat ggctattatt tctgcggtca ttgcgctggt ctgccacgca
     4801 atcgctctgg aagcccgcat cctgcccgac ggtgatagcg gacaaaacct cagcctgctg
     4861 aacgttggtt cattggtcag tttgatgatc tgtacggtaa tgaccattgt ggcttctcgc
     4921 aatcgtggct ggttgctgct acccattgtc tatgcctttg cgcttatcaa cctggcgctg
     4981 gcgaccttca tgcccaatga atacatcacc catctggaag caacgcctgg gatgctggtg
     5041 cacattggct tatcgctctt ttcctatgcc acgctaatta tcgccgccct gtacgcgctg
     5101 caactggcgt ggattgatta ccaactgaag aacaagaagc tggcatttaa ccaggaaatg
     5161 ccgccattga tgagtatcga gcgtaaaatg ttccacatca cgcagattgg cgtggtgctg
     5221 ctaacgctca cgctttgcac tggcctgttc tacatgcaca acctatttag catggaaaat
     5281 atcgacaagg ctgtgctctc tatcgtggcg tggtttgtct atattgtgct gctgtgggga
     5341 cattaccatg aaggatggcg tggacgccgc gtcgtctggt ttaacgttgc gggcgcggta
     5401 attctgacac tggcctactt cggcagccga attgtccagc agttaatcag ctaaacccag
     5461 aaaaggagtt tcccctggaa cacatttcta ctactacgtt gatcattatt ctgatcatca
     5521 tggtggtcat ttcagcctat ttttccgggt ccgaaaccgg aatgatgacc ctcaaccgct
     5581 atcgtctgcg acatatggcg aaacagggta atcgctcggc caaacgcgtc gaaaaattgc
     5641 tgcgtaagcc agaccgcctg ataagcctgg tgttaatcgg caataacctg gtcaatattc
     5701 ttgcctccgc gctcggcact attgttggga tgcgtttgta cggcgatgcg ggcgtggcaa
     5761 ttgcgactgg tgtgctgact tttgtcgtac tggtatttgc tgaggtattg ccgaaaacca
     5821 ttgccgcgct gtacccggaa aaagtcgctt atccgagtag ttttctgctg gctccgctgc
     5881 aaattttgat gatgccgctg gtctggttgc tgaatgctat cacccgtatg ctgatgcgca
     5941 tgatgggtat caaaaccgat atcgtggtta gcggctcttt gagcaaagaa gagttgcgca
     6001 ctatcgtgca cgaatcacgc tcacaaattt cccgtcgcaa tcaggatatg ctgctgtcgg
     6061 tgctcgatct ggaaaaaatg accgttgatg acatcatggt gccgcgcagt gaaattatcg
     6121 gtattgatat caacgatgac tggaaatcga ttctgcgcca actctcccac tcacctcacg
     6181 ggcgcatcgt gctctaccgt gattcgctgg acgacgccat cagtatgctg cgagtacgtg
     6241 aagcctggcg attgatgtcg gagaaaaaag agttcaccaa agaaaccatg ctgcgcgccg
     6301 cggacgagat ctattttgtg ccggaaggta cgccgctcag cacgcagttg gtaaagtttc
     6361 agcgcaacaa aaagaaagtc ggcctggtcg tcaacgagta tggagacatt caggggctgg
     6421 tgacggttga agatattctg gaagagattg tcggcgattt cactacgtcg atgtcgccaa
     6481 cacttgccga agaggtcacg ccgcaaaacg acggttcggt gattatcgat ggcaccgcca
     6541 acgtgcggga aatcaacaaa gcctttaact ggcatctacc ggaagatgat gcccgcacgg
     6601 ttaatggcgt cattcttgag gcactggaag agatccctgt cgcaggcacc cgcgtgcgta
     6661 ttggcgagta cgatatagat attctcgacg tacaggacaa tatgattaag caggtaaaag
     6721 tttttcctgt gaaaccgctg cgcgagagtg tggcggagta acgaaaacgg ccctgcattc
     6781 gcatgcaggg ccgtgaatta ttacgaaaac agaaattacg cttttgcttt cgctacagtt
     6841 accatcgccg cacgaatcgt acgaccattc agcgtataac ccttctgcat aatgcccagt
     6901 acgttacctg gcgcaacgtc atcagattcc accattgcga tagcctgatg cacattcggg
     6961 tccagcggca cgttagtttc ggcgatcact tcaacaccaa acttacgcac aacatccagc
     7021 atcgacttca gcgtcagctc aatgccttca accatcgcag acatatccgg gttagcttta
     7081 tcagccactt ccagcgcacg atccaggcta tcaatcaccg gcagcaattc gttgatgaat
     7141 ttctccagcg caaatttgtg ggctttttca atatccagtt cagtacgtcg acgcaggttt
     7201 tccatttcgg cttttacacg caaaatgccg tcacgttcac gggtctgggc ttcagccagc
     7261 tgagcttcga gattcgcaat tttttcatcg cgcggatcca cctgctcagc agaagcttct
     7321 ggctcaactg cctcaatctc ttcgtgctga tccatgataa tttcttccgg ggcttgcccc
     7381 tcaggcgttt tctgttcttt actactcatg aatttctccg cgtttttttc gcattcatct
     7441 cgctaacttc gcttattatg gggatcagtt tcagggtttc aagggaagca ctcacattgt
     7501 catcaatctt cgcaacaagg acctcggaaa aatgaataat catttcaagt gtattggcat
     7561 tgtgggacac ccacggcacc ccactgcact gacaacacat gaaatgctct accgctggct
     7621 gtgcaaaaaa ggttacgagg tcatcgttga gcaacaaatc gctcacgaac tgcaactgaa
     7681 gaatgtgaaa actggcacgc tcgcggagat tgggcaacta gctgatctcg cggtagtcgt
     7741 tggtggcgac ggtaatatgc tgggcgcggc acgcacactc gcccgttacg atattaaagt
     7801 tattggaatc aaccgtggca acctgggttt cctgactgac cttgaccccg ataacgccca
     7861 gcaacagtta gccgatgtac tggaaggcca ctacatcagc gagaaacgtt ttttgctgga
     7921 agcgcaagtc tgtcagcaag attgccagaa acgcatcagc accgcgataa atgaagtggt
     7981 gcttcatcca ggcaaagtgg cacatatgat tgagttcgaa gtgtatatcg acgagatctt
     8041 tgcgttttct cagcgatctg atggactaat tatttcgacg ccaacaggct ccaccgccta
     8101 ttccctctct gcaggcggtc ctattctgac cccctctctg gatgcgatta ccctggtgcc
     8161 catgttcccg catacgttgt cagcacgacc actggtcata aacagcagca gcacgatccg
     8221 tctgcgtttt tcgcatcgcc gtaacgacct ggaaatcagt tgcgacagcc agatagcact
     8281 gccgattcag gaaggtgaag atgtcctgat tcgtcgctgt gattaccatc tgaatctgat
     8341 tcatccgaaa gattacagtt atttcaacac attaagcacc aagctcggct ggtcaaaaaa
     8401 attattctaa ttttacgcca gcctctttac tgtatataaa accagtttat actgtacgca
     8461 ataacagtaa tggtttttca tacaggaaaa cgactatgtt ggcacaactg accatcagca
     8521 actttgctat cgttcgtgag cttgagattg attttcatag cggcatgacc gtaataactg
     8581 gcgagaccgg cgcgggtaaa tctattgcaa tagatgccct cggtctttgt ctcggtggtc
     8641 gcgctgaagc cgacatggtg cgtaccggcg ctgctcgcgc tgacctgtgc gcccgttttt
     8701 ctctgaaaga tacgccagcg gctctgcgct ggctggaaga aaatcagctt gaagacgggc
     8761 atgaatgttt gcttcgtcgc gtaatcagca gcgatggtcg ctcccgtggt ttcatcaacg
     8821 gtacagctgt tcctctgtca caactgcgcg aactgggtca gttgctgatt cagatccatg
     8881 gtcagcacgc tcatcaatta ctcaccaaac ctgagcacca aaaattcctg cttgatggct
     8941 atgccaatga aacctctcta ctgcaggaaa tgaccgcacg ttatcagttg tggcatcaaa
     9001 gctgccgtga cctcgcgcat catcaacagt taagtcagga acgcgccgcc cgtgcggaac
     9061 tgctgcaata ccaattaaaa gaacttaacg aatttaatcc gcagcccgga gagtttgaac
     9121 aaatcgacga agagtacaaa cgtctggcga acagcggtca attgctgacc accagccaga
     9181 atgcattggc attaatggcc tacggtgaag acgcaaacct gcaaagtcag ctttacacgg
     9241 ctaaacaact ggtgagcgaa ttgattggca tggacagcaa actgtccggc gtacttgata
     9301 tgctggaaga agctaccatc cagattgctg aagccagcga tgaactgcgc cactactgcg
     9361 atcgtctgga tctcgatccc aaccgactat ttgaacttga acagcgcatc tcaaaacaga
     9421 tttcgctggc acgtaaacat cacgtcagcc ctgaggcatt gccacagtat taccagtcgc
     9481 tactggaaga acagcagcaa ctggacgatc aggccgactc acaagaaacg cttgcgctgg
     9541 cggtaacgaa acatcatcag caggcactgg aaatcgcgcg cgcattacac caacaacgcc
     9601 agcaatatgc agaagaactt gcacagctga tcaccgacag tatgcatgcg ctctcaatgc
     9661 cgcatgggca gtttacgatc gatgttaaat ttgacgagca tcacctgggc gctgacggtg
     9721 ccgatcgtat tgagtttcgg gtaaccacca acccaggtca gccaatgcag cctattgcca
     9781 aagtcgcatc cggtggtgaa ttgtcccgca tcgcactggc aacccaggtc atcacggcgc
     9841 gtaaaatgga aaccccggca ctgatttttg atgaagtgga tgtagggatt agcggtccaa
     9901 cagcggcagt tgtcggcaaa ctgctgcgtc aactcggcga atcaactcag gtgatgtgtg
     9961 ttacccacct gccacaagtc gcgggatgtg gtcatcaaca ctattttgtc agcaaagaaa
    10021 ccgatggtgc gatgacagaa acgcatatgc aatccctgaa taaaaaagcg cggttacaag
    10081 agctggcgcg cctgcttggt ggcagtgaag tcacacgtaa tacactggcg aatgcgaaag
    10141 aactgcttgc agcgtaaact tttttcctgc ttcacggtca gagtaaacag caaaacgccg
    10201 taagaccgga aagcaaaagg ttttaaagtg atgaaaggtc tattatcatc ggcatattac
    10261 agatgagcca cgtactgcta gggcccgaaa aggaatcaaa tcactatgcg ctgtaaaacg
    10321 ctgactgctg cagcagcagt actattgatg ttgaccgcag gctgttccac tctggagcga
    10381 gtggtttacc gtcctgacat caaccagggg aactatctga ccgctaacga cgtatccaaa
    10441 atacgtgttg gcatgacgca acaacaagtt gcgtacgcat tgggtacacc gctgatgtcc
    10501 gatccatttg gtacgaatac ctggttctat gtcttccgcc agcaaccagg tcatgaaggt
    10561 gtaacgcagc aaacgctgac gctgaccttt aacagtagcg gtgtgttgac caatattgat
    10621 aacaaacctg cgctgagtgg taactaataa taaagttgct ctcaaagacg ttaaaaaagg
    10681 tgctcaatga gcaccttttt tctgtctgtt atttattcgc tgatttttct gctcgttgcc
    10741 tgcgaagctc tttcggatcg gcaatgagag ggcgataaat ctccacccga tcgccatcat
    10801 gcacactatc gcttagtttt gccggacggc tgtaaatgcc gactttgttt ttagttaaat
    10861 cgatatcggt acgcaattcc agcaagccac tggcgcgaat agcttcttca accgtcgcgc
    10921 cctcctgcag cgtcacgcgc tgcaggtact gcttctcagg tagcgcataa gccacctcaa
    10981 cggcaatttt acctggcact gtaaacctct ttcgcacgaa ccgtaaaagc ctggaccata
    11041 ttagacgcca gctctttaaa cacgcgacca aaggcgagtt caatcaactt attggtaaac
    11101 tcaaagtcga gatgaaactc gatacgacac gcctcctggc tcagcggcgt aaacttccat
    11161 ccaccaatca atttcttgaa cggcccatcc accagattca taagaatact ttggttactg
    11221 gtcaactggt tgcgggtagt aaacgttttg ctgatcccag ccttagagac atctaccgcc
    11281 gcagtcatct gcccaggagt ggactccaga atccgacttc cggtacaacc cggcaaaaac
    11341 tgaggataag actgaacgtc attcactaac tgatacattt gctccgcgct gtagggtacc
    11401 agtgcggtcc ggctaatctg aggcataact atttccatca acaaaaatcc aacaaataat
    11461 atcatttatc ctgctgtaaa aaaaacgcta tcccggcgct gggtaacatc gggttcatgc
    11521 taagatagag ccttgtcccc cgcaggattg atatggggtg ttttcgattt cagattaccg
    11581 atgattcacg acgcttatga cgaagaaaaa agcacataaa cctggttcag cgaccatcgc
    11641 gcttaacaag cgcgcccgtc acgaatactt tatcgaagaa gagttcgaag cgggacttgc
    11701 cctgcaaggc tgggaagtta aatccctgcg cgcaggaaaa gccaatatca gcgacagcta
    11761 cgtccttctg cgtgacggag aggcatttct gtttggcgct aacatcacgc caatggccgt
    11821 ggcctccacg catgtggtgt gcgatcctac ccgtacccgc aagttacttc tcaaccagcg
    11881 cgaactggac tcattgtacg gtcgcgtcaa tcgagaaggc tataccgtag tggcgctctc
    11941 cctgtactgg aaaaatgcct ggtgcaaagt gaaaatcggc gtcgccaaag gtaaaaaaca
    12001 gcacgataaa cgttcagata tcaaagaacg cgaatggcag gtggataaag cacgtatcat
    12061 gaaaaacgcc caccgttaaa cctgcactcc aattattgac cagttcctca ccgcgcctcc
    12121 ctctccggcg gcgcgaatga acatcttatt ggctatcaca tccgacacaa atgttgccat
    12181 cccattgctt aatcgaataa aaatcaggct acatgggtgc taaatcttta acgataacgc
    12241 cattgaggct ggtcatggcg ctcataaatc tggtatactt gccgttacac attggggctg
    12301 attctggatt cgacgggatt tgcgaaaccc aaggtgcatg ccgaggggcg gttggcctcg
    12361 taaaaagccg caaaaaatag tcgcaaacga cgaaaactac gctttagcag cttaataacc
    12421 tgcttagagc cctctctccc tagcctccgc tcttaggacg gggatcaaga gaggtcaaac
    12481 ccaaaagaga tcgcgtggaa gccctgcctg gggttgaagc gttaaaactt aatcaggcta
    12541 gtttgttagt ggcgtgtccg tccgcagctg gcaagcgaat gtaaagactg actaagcatg
    12601 tagtaccgag gacgtaggaa tttcggacgc gggttcaact cccgccagct ccaccaatca
    12661 tgattggacg gtataaggac aacaccaata aaaacaggag gttagcagtc tcagcaggac
    12721 accgaccaga cggtgaagag acataaaagg atacgcaaag gagccgcggc tcctggtgac
    12781 atgaaagccc acagatgtgg gctttttcgt tgatggtcag aacgaccagt tcacaccagc
    12841 taccccgttc cacggggatt ccacaccggc accatggcta taccccaccc caagatgccc
    12901 gcttaacgta ctgctgaatg aggctttaat acctgcctgg tatattccac gtctgcccga
    12961 caaatcattg acgaaattac cgtcactatt cactttcacc cggttatcat cgacaaattc
    13021 tttgcgcaca gccgccttca gccacggctc aacttccata ccgttcccca gacgcatgtt
    13081 gtaactcagc gttgcaccca gttcacgata taaacctgcg ggtatcgact gatttcgatt
    13141 ccatgccatt ggataaatga tattcagggt tatcagcggt gaacccccgt taacgatgca
    13201 tacggcgtca ggttccagtt accatcggta aatcgcatcc cggtttcaat gtgaccgccc
    13261 agcccgttgc tgcgataact gccgttggtg gctccaccgc tgccaaccgt ggagtcgcga
    13321 gcttcggtac ctgctaatac caataaatta ccgccatttt ccagcaacat attggtcgct
    13381 aaattgccgg aaatggaaaa agtgccgtac tggtgagtac cgctgatttc aataccgtta
    13441 gccgtgctcg tctggagagc ggcaccgctg ttctggacga tatctgtcgc tttgccatta
    13501 tcgttaactg tcagcgtacc gccttcattg atctttgttt ttattgcctc tccgttagct
    13561 gaaactgttt gtattccgcc gtcgttaatc gttgtctcat tcgccacccc ctcgacgatt
    13621 tgttcgccgc cggtgagcgt cgtgcctgtc gcagtggctt ttgttttgac gatctcccgt
    13681 ccgcccgtat tgacctgtgt tttgtcagaa gaggtgtctg actccacggt taacacgccg
    13741 ccatttgcca gcaggatatt gttcgccgca ccctgctcga tgctgaacgc gacgccatcc
    13801 gcgcgtgttc ctgtgacccg cgtcgccctg gtggttgcaa ccaaagcgcc ctggctactc
    13861 tgctgtatcc ccgttgcgct gcctttctcc cgcacatcga gtgtgccgcc gtcattaagc
    13921 accgagtttt cagccagacc gccctcatta actacctgtg aacccccatt aataatggaa
    13981 ccttccgctg tcccgtttgc cataatttgt tgtaggccag agacgatatc ggtattgatt
    14041 gccttaccat aattctgaac ggtttgcgtg ccaccattga tgtgtgtttt ctctgttgac
    14101 ccaccatcaa caatttgttc accactttcg atatttgcct cagtggctaa tccatatacc
    14161 gtttgcttgc cacctttgat atttgcttta tcagaagtgg cactggcata tattgtttgg
    14221 gtgccagcac tattgagtac agtgccaaca tcttttccat aaacatccat tttgccgttg
    14281 gcattaataa tcgtatcaac tgcccgggaa ccagtgacga ctgttaatga gccagcgttt
    14341 tccagcacta catttttagc ttctgaattc ctgatgtaga aagcatcacc ataactgttg
    14401 gttcctttga taagggttcc ggaagttgtg gaagcaatta atgcgccgcc ggattgttgc
    14461 tcaacatgct tagcctcacc accgtcctga acctccagaa cgccaccatt attaagtctg
    14521 gtggtatctg ttttagcctc cttctggaca atcagcttac cgccagcatc aacggtagta
    14581 tttttcgccg aggttttagc cactaccgtc agttcgccgg tattttccag cacaacataa
    14641 ttagcctccc ctccgggtaa tagtgaagtg agagagcttg ttgtatcctt cgatatcagt
    14701 ccctgcgccc gtgttggcaa ctaaagcact gcccgtctcc tggttaaccc catgtgctat
    14761 accgccggta tagacaatca gcgagcctcc ggcgctaata ttgctgccag ttgccgtacc
    14821 atctttctca acaacctgcc ggctcccggt ggaaatattt gtcgtgtcag ctttcccgcc
    14881 gctcttgata ttttgtgttc cgctgttgat attggtaccc gtggcaatac catgattatt
    14941 aatattctgt gtaccaccat tgattatggt attggtcgcg tttccggtaa catccattac
    15001 cccgccgtta tctattcggg tcgcatcagc tttagcattc gttaaaactg acattgttcc
    15061 tttatcttta ataatcgtct tatttgccga accatatgcg tttatgtcta aatgaccacc
//
LOCUS       DAJVSY010000099        15030 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.099, whole genome shotgun sequence.
ACCESSION   DAJVSY010000099 DAJVSY010000000
VERSION     DAJVSY010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15030
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.099"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..450
                     /locus_tag="OQQ19_002728"
     CDS             <1..450
                     /locus_tag="OQQ19_002728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312811.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF945 family protein"
                     /protein_id="HCS1804292.1"
                     /translation="QEVNAALFKEYLPLLQQSEPTIKQPVRWKNALGELNANLDISIA
                     DPAKSSSSTNKDIKSLNFDVKLPLNVVTETAKQLNLSEGMDAEKAQKRADKQISGMMT
                     LGQMFQLITIDNNTASLQLRYTPGKVVFNGQEMSEEEFMSRAGRFVH"
     gene            complement(491..1423)
                     /locus_tag="OQQ19_002729"
     CDS             complement(491..1423)
                     /locus_tag="OQQ19_002729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HCS1804293.1"
                     /translation="MANLLNKFIMTRILAAITLLLSIVLTILVTIFCSVPIIIAGIVK
                     LLLPVPVIWRKVSRFCDFMMYCWCEGLAVLLHLNPHLQWEVHGLEGLSKKNWYLLICN
                     HRSWADIVVLCVLFRKHIPMNKYFLKQQLAWVPFLGLACWALDMPFMKRYSRAYLLRH
                     PERRGKDVETTRRSCEKFRLHPTTIVNFVEGSRFTQEKHQQTHSTFQNLLPPKAAGIA
                     MALNVLGKQFDKLLNVTLCYPDNNRQPFFDMLSGKLTRIVVHVDLQPIADELHGDYIN
                     DKSFKRHFQQWLNSLWQEKDRLLTSLMSSQRQDK"
     gene            1787..4573
                     /gene="polA"
                     /locus_tag="OQQ19_002730"
     CDS             1787..4573
                     /gene="polA"
                     /locus_tag="OQQ19_002730"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HCS1804294.1"
                     /translation="MVQIPQNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLN
                     MLRSLIMQYKPTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAM
                     GLPLLAVSGVEADDVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTIL
                     GPEEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEP
                     EKIAGLSFRGAKTMAAKLQQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELL
                     GLFKKYEFKRWTADVEAGKWLQAKGAKPAAKPQETSVADEAPEVTATVISYDNYVTIL
                     DEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDA
                     PDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILN
                     SVAGRHDMDSLAERWLKHKTITFEEIAGKGKNPLTFNQIALEEAGRYAAEDADVTLQL
                     HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL
                     EKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLP
                     KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVR
                     NEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAE
                     VFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGV
                     LEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADII
                     KRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPL
                     LVEVGSGENWDQAH"
     gene            complement(4955..5587)
                     /locus_tag="OQQ19_002731"
     CDS             complement(4955..5587)
                     /locus_tag="OQQ19_002731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418301.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HCS1804295.1"
                     /translation="MTNLNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALN
                     TLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY
                     LEKRHSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLN
                     MVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQPVEETQDGE"
     gene            6169..6678
                     /gene="yihI"
                     /locus_tag="OQQ19_002732"
     CDS             6169..6678
                     /gene="yihI"
                     /locus_tag="OQQ19_002732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Der GTPase-activating protein YihI"
                     /protein_id="HCS1804296.1"
                     /translation="MKPSSSNSRSKGHAKARRKTREELDQEARDRKRQKKRRGHAPGS
                     RAAGGNTTSGSKGQNAPKDPRIGSKTPIPLGVTEKVTKQHKPKSEKPMLSPQAELELL
                     ETDERLDALLERLEAGETLSAEEQSWVDAKLDRIDELMQKLGLSYDDDEEEEEDEKQE
                     DMMRLLRGN"
     gene            6867..8240
                     /gene="hemN"
                     /locus_tag="OQQ19_002733"
     CDS             6867..8240
                     /gene="hemN"
                     /locus_tag="OQQ19_002733"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312816.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HCS1804297.1"
                     /translation="MSVQQIDWDLALIQKYNYSGPRYTSYPTALEFSEDFGEQAFLQA
                     VARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAG
                     RHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLR
                     AEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQT
                     PESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAF
                     LTQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGD
                     CYAQNQKELKQYYQQVDEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYAPIEKQW
                     DLHFADYFAEDLKLLAPLAKDGLVDVDEKGIQVTAKGRLLIRNICMCFDTYLRQKARM
                     QQFSRVI"
     gene            complement(8430..8540)
                     /locus_tag="OQQ19_002734"
     CDS             complement(8430..8540)
                     /locus_tag="OQQ19_002734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YshB family small membrane protein"
                     /protein_id="HCS1804298.1"
                     /translation="MLESIINLVSSGAVDSHTPQTAVAAVLCAAMIGLFS"
     gene            complement(8651..10060)
                     /gene="glnG"
                     /locus_tag="OQQ19_002735"
     CDS             complement(8651..10060)
                     /gene="glnG"
                     /locus_tag="OQQ19_002735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(I)"
                     /protein_id="HCS1804299.1"
                     /translation="MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALA
                     SKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL
                     PKPFDIDEAVALVERAISHYQEQQQPRNIQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
                     SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT
                     GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI
                     IAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELG
                     VEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAE
                     STSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAAR
                     LLGWGRNTLTRKLKELGME"
     gene            complement(10072..11121)
                     /gene="glnL"
                     /locus_tag="OQQ19_002736"
     CDS             complement(10072..11121)
                     /gene="glnL"
                     /locus_tag="OQQ19_002736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(II)"
                     /protein_id="HCS1804300.1"
                     /translation="MATGTQPDAGQILNSLINSILLIDDNLEIHYANPAAQQLLAQSS
                     RKLFGTPLPELLSYFSLNIELMQESLEAGQGFTDNEVTLVIDGRSHILSVTAQRMPDG
                     MILLEMAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSKALP
                     DPSLLEYTKVIIEQADRLRNLVDRLLGPQLPGTRVTESIHKVAERVVTLVSMELPDNV
                     RLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGER
                     YRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTS
                     WPGHTEFSVYLPIRK"
     gene            complement(11295..12704)
                     /gene="glnA"
                     /locus_tag="OQQ19_002737"
     CDS             complement(11295..12704)
                     /gene="glnA"
                     /locus_tag="OQQ19_002737"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--ammonia ligase"
                     /protein_id="HCS1804301.1"
                     /translation="MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFF
                     EEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYD
                     RDPRSIAKRAEDYLRSTGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEGAWN
                     SSTQYEGGNKGHRPAVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAG
                     QNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLS
                     KNGVNLFAGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLA
                     YSARNRSASIRIPVVSSPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEA
                     MDKNLYDLPPEEAKEIPQVAGSLEEALNELDLDREFLKAGGVFTDEAIDAYIALRREE
                     DDRVRMTPHPVEFELYYSV"
     gene            13077..14900
                     /gene="typA"
                     /locus_tag="OQQ19_002738"
     CDS             13077..14900
                     /gene="typA"
                     /locus_tag="OQQ19_002738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000570679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-dependent GTPase TypA"
                     /protein_id="HCS1804302.1"
                     /translation="MIEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMD
                     SNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAF
                     DGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF
                     PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYV
                     GVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI
                     TGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDR
                     LNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREI
                     DGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIG
                     FRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQGKAVAFALFGLQDRG
                     KLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPIRMTLE
                     QALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRAPKDY"
BASE COUNT         3878 a         3772 c         3876 g         3504 t
ORIGIN      
        1 caagaagtga atgctgcatt gttcaaagag tatttaccgt tattacaaca aagtgagccg
       61 accattaaac aaccggtaag atggaagaac gcactcggcg aactaaatgc caatctggat
      121 atcagtattg ccgacccagc caaatcttca tcatccacaa acaaagatat caaatcgctc
      181 aattttgatg tgaagttacc gcttaatgtc gtcacagaaa ccgcaaaaca gcttaattta
      241 tctgaaggaa tggatgcgga aaaagcgcaa aagcgggctg ataaacaaat cagcgggatg
      301 atgaccttag gtcagatgtt tcagttaatc acgattgaca acaataccgc ctcgctgcaa
      361 ctgcgttata caccgggtaa agttgttttt aacggacagg agatgagcga agaagaattt
      421 atgtctcgtg ccggacgttt tgttcattaa aatactcact cgcctctgct cattcagagg
      481 cgagcaaaat ttacttgtcc tgccgctgtg atgacatcaa cgacgtcaga agtcggtctt
      541 tttcctgcca cagtgagttc agccattgct gaaaatggcg cttaaagctt ttgtcattga
      601 tgtagtcgcc atgtaactca tcggcaatag gctgtaaatc cacatgaacg acaattcgcg
      661 tcagtttacc gcttaacata tcgaagaacg gctgacggtt attgtccgga taacacagcg
      721 taacattaag cagtttatcg aattgtttac ccagtacatt tagcgccatc gcaatgcctg
      781 ccgcctttgg tggcaacaag ttttgaaaag tggagtgggt ttgctgatgt ttttcttgcg
      841 tgaaacggga gccttcaacg aaattgacaa tggtggtggg atgcaggcga aacttttcac
      901 aagaacgccg agtggtttca acatctttac cacgtcgctc cggatgacgt aataaataag
      961 cgcgggaata acgcttcata aacggcatat ccagcgccca gcacgccagg ccaagaaatg
     1021 gcacccaggc cagctgttgc ttgaggaaat atttattcat cggaatgtgc ttacgaaaca
     1081 gcacgcacag tacgacaata tctgcccaac tacggtggtt acaaataagc agataccagt
     1141 tcttcttact taacccttcc agcccgtgaa cttcccattg caggtgtggg ttcagatgca
     1201 gtaataccgc cagaccttca caccagcaat acatcataaa atcacaaaaa cgcgaaacct
     1261 ttcgccaaat gactggcaca ggtagcaata gttttacaat cccggcaatg atgatcggga
     1321 cggaacaaaa aatagtgacc aaaatggtca atacgatact cagcaaaagg gttatcgcag
     1381 cgagtattct cgtcataatg aatttattca aaaggttagc catagacagt gcgctaaaga
     1441 agcgcaaggc gcagatttta gcagaaaacg acccaaataa cggatgatcc ttaaggagaa
     1501 aaataattca tatctatcca cattagaaaa aatcccatta tctcaattat tagggatggc
     1561 tttattttta actacatgaa aaacaaagac aaacatcata ctgtaaaaag catgataata
     1621 aattaaaagc gatgtaaata atttatgcac aaagttatcc acatgacgat ttgcgagcga
     1681 tccagaagat ctacaaaaga ttttcacgaa aagcggtgaa aaactcatgt ttttatcctg
     1741 tctgtggcat cctttaccca taatctgata aacaggcacg gacattatgg ttcagatccc
     1801 ccaaaatcca cttatccttg tagatggttc atcttatctt tatcgcgcat atcacgcgtt
     1861 tcccccgctg actaacagcg caggcgagcc gaccggtgcg atgtatggtg tcctcaacat
     1921 gctgcgcagt ctgatcatgc aatataaacc gacgcatgca gcggtggtct ttgacgccaa
     1981 gggaaaaacc tttcgtgatg aactgtttga acattacaaa tcacatcgcc cgccaatgcc
     2041 ggacgatctg cgagcacaaa tcgaacctct gcacgcgatg gttaaagcga tgggactgcc
     2101 gctgctggcg gtttctggcg tagaagcgga cgacgttatc ggtactctgg cgcgcgaagc
     2161 cgaaaaagcc gggcgtccgg tgctgatcag cactggcgat aaagatatgg cgcagctggt
     2221 gactccaaat attacgctta tcaataccat gacgaatacc atcctcggac cggaagaggt
     2281 ggtgaataag tacggcgtgc cgccagaact gatcatcgat ttcctggcgc tgatgggtga
     2341 ctcctccgat aacatccctg gcgtaccggg cgtcggtgaa aaaaccgcgc aggcattgct
     2401 gcaaggtctg ggcgggctgg atacgctgta tgccgagcca gaaaaaattg ctgggttgag
     2461 cttccgtggc gcgaaaacaa tggcagcgaa gctccagcaa aacaaagaag ttgcttatct
     2521 ctcataccag ctggcgacga ttaaaaccga cgttgaactg gagctgacct gtgaacaact
     2581 ggaagtgcag caaccggcag cggaagagtt gttggggctg ttcaaaaagt atgagttcaa
     2641 acgctggact gctgatgtcg aagcgggcaa atggttacag gccaaagggg caaaaccagc
     2701 cgcgaagccg caggaaacca gtgttgcaga cgaagcgcca gaagtgacgg caacggtgat
     2761 ttcttatgac aactacgtca ccatccttga tgaagaaaca ctgaaagcgt ggattgcgaa
     2821 gctggaaaaa gcgccggtat ttgcatttga taccgaaacc gacagccttg ataacatctc
     2881 tgctaacctg gtcgggcttt cttttgctat cgagccaggc gtagcggcat atattccggt
     2941 tgctcatgat tatcttgatg cgcccgatca aatctctcgc gagcgtgcac tcgagttgct
     3001 aaaaccgctg ctggaagatg aaaaggcgct gaaggtcggg caaaacctga aatacgatcg
     3061 cggtattctg gcgaattacg gcattgagct gcgtgggatt gcgtttgata ccatgctgga
     3121 gtcctacatt ctcaatagcg ttgccgggcg tcacgatatg gacagcctcg cggaacgttg
     3181 gttgaagcac aaaaccatca cttttgaaga gattgcgggt aaaggcaaaa atccactgac
     3241 ctttaaccag attgccctcg aagaggccgg acgttacgcc gccgaagatg ctgatgtcac
     3301 cttgcagttg catctgaaaa tgtggccgga cctgcaaaaa cacaaagggc cgttgaacgt
     3361 cttcgagaat atcgaaatgc cgctggtgcc ggtgctttca cgcattgaac gtaacggtgt
     3421 gaagatcgat ccgaaagtgc tgcacaatca ttctgaagag ctcaccttgc gtctggctga
     3481 gctggaaaag aaagcgcatg aaattgcagg tgaagaattt aacctttctt ccaccaagca
     3541 gttgcaaacc attctgtttg aaaaacaggg tattaaaccg ctgaagaaaa cgccgggtgg
     3601 cgcgccgtca acgtcggaag aggtactgga agaactggcg ctggactatc cgttgccaaa
     3661 agtgattctg gagtatcgtg gtctggcgaa gctgaaatcg acctacaccg acaagctgcc
     3721 gctgatgatc aacccgaaaa ccgggcgtgt gcatacctct tatcaccagg cagtaactgc
     3781 aacgggacgt ttatcgtcaa ccgatcctaa cctgcaaaac attccggtgc gtaacgaaga
     3841 aggtcgtcgt atccgccagg cgtttattgc gccagaggat tatgtgattg tctcagcgga
     3901 ctactcgcag attgaactgc gcattatggc gcatctttcg cgtgacaaag gcttgctgac
     3961 cgcattcgcg gaaggaaaag atatccaccg ggcaacggcg gcagaagtgt ttggtttgcc
     4021 actggaaaca gtcaccagcg agcaacgccg tagcgcgaaa gcgatcaact ttggtctgat
     4081 ttatggcatg agtgctttcg gtctggcgcg gcaattgaac attccacgta aagaagcgca
     4141 gaagtacatg gacctttact tcgaacgcta ccctggcgtg ctggagtata tggaacgcac
     4201 ccgtgctcag gcgaaagagc agggctacgt tgaaacgctg gacggacgcc gtctgtatct
     4261 gccggatatc aaatccagca atggtgctcg tcgtgcagcg gctgaacgtg cagccattaa
     4321 cgcgccaatg cagggaaccg ccgccgacat tatcaaacgg gcgatgattg ccgttgatgc
     4381 gtggttacag gctgagcaac cgcgtgtacg tatgatcatg caggtacacg atgaactggt
     4441 atttgaagtt cataaagatg atgttgatgc cgtcgcgaag cagattcatc aactgatgga
     4501 aaactgtacc cgtctggatg tgccgttgct ggtggaagtg gggagtggcg aaaactggga
     4561 tcaggcgcac taagattcgc ctgaacatgc ccttttttcg taagtaagca acataagctg
     4621 tcacgttttg tgatggctat tagaaattcc tatgcaacaa ctgaaaaaaa attacaaaaa
     4681 gtgctttctg aactgaacaa aaaagagtaa agttagtcgc gtagggtaca gaggtaagat
     4741 gttctatctt tcagaccttt tacttcacgt aatcggattt ggctgaatat tttagccgcc
     4801 ccagtcagta atgactgggg cgttttttat tgggcgaaag aaaagatccg taatgcctga
     4861 tgcgctatgt ttatcaggcc aacggtagaa ttgtaatcta ttgaatttac gggccggata
     4921 cgccacatcc ggcacaagca ttaaggcaag aaaattattc gccgtcctgc gtttcttcta
     4981 caggctgcat ctcgctaaac caggtatcca gtttctgccg cagcttgtcc acgccttgtt
     5041 tcttcaacga agaaaacgtt tcaacctgca catcaccgtt aaacgccagt acagcttcac
     5101 gcaccatatt caattgcgct ttacgtgcgc cgcttgccag tttgtccgct ttggtcagca
     5161 gcaccagaac ggcgatattg ctgtctaccg cccactcaat catctgctga tccaaatctt
     5221 tcagcggatg gcgaatatcc attagcacca ccagaccttg caggctatga cgtttttcga
     5281 ggtattcgcc gagcgcacgc tgccatttgc gcttcatctc ttccgggact tccgcataac
     5341 cgtacccagg caagtcaacc agacgcttgc cgtcagccac ttcaaacagg ttgataagct
     5401 gggtgcgccc tggggttttt gaggtacgag ccaggctttt ctggttagtc agcgtgttca
     5461 gcgcgctgga tttacctgcg ttggaacggc ctgcaaaagc cacttcaatt ccggtatcgg
     5521 aaggtaggtg gcgaatatca ggcgcactca tcacaaaatg cgtctgttga taattcaaat
     5581 tagtcaaagc ggtcgtctcc gtcagtcaaa gctttgtggc gattatacct gaaccataat
     5641 aaaaggcgga tttttcggcg tgagcgttgt aagtaaaagc catacgcttt gtgagacatt
     5701 gccgatagtc tttatgcgaa atagcagaga aaattctgcg atgcatgtca aataagctat
     5761 ataaatcagt gaattgcttt tatataaaac tctgaaaatg tgcaaatact gatggcggtt
     5821 gattgtttgt ttaaagcgaa ggcgtaaagt agcacccata gagcgaggac gctaacagga
     5881 acaatgactc aggatgaggg tcaggagcgc caggaggcga agacagagga ttgtcaggaa
     5941 gacaaacgtc cggagacgta attaaacgga aatggaatca acacggattg ttccggctaa
     6001 aggaaaaaca gggtgtgttg gcggcctgca aggattgtaa gacccgttaa gggttatgag
     6061 tcaggaaaaa aggcgacaga gtaatctgtc gccttttttc tttgcttgct ttctgttaga
     6121 ttccgccgca aatcgatact gaataaaacg gctaaaagac gaaccattat gaaaccatca
     6181 tcttcaaact cacgcagcaa aggtcatgca aaagcgcgtc gaaaaacacg cgaggagctg
     6241 gatcaggaag ctcgtgatcg caagcgtcag aaaaaacgtc gtggtcatgc gccgggcagc
     6301 cgcgcagcgg gcggaaacac cacgtcaggc agcaaaggcc agaacgcacc aaaagatcca
     6361 cgtattggca gtaaaacccc tattccattg ggcgtgactg aaaaagtcac caaacagcac
     6421 aaaccgaaga gtgagaaacc tatgctttca ccgcaggcgg agttggaatt actggaaacg
     6481 gatgagcgtc tggatgcgct gctggaacgt ctggaagcag gcgaaaccct gagtgccgaa
     6541 gagcaatcct gggtggatgc taaactggat cgtattgatg agttgatgca gaaactcggc
     6601 ctctcttatg acgatgacga agaagaggaa gaagacgaga agcaagaaga catgatgcgt
     6661 ctgctgcggg gcaactaacg gattgccgcc gtgggccttc ccgttctgct gataaccctt
     6721 ccggttatat gttatctggt gtggttattc gttaaactac agcggttgtc gcggcgacaa
     6781 aagtggctgc gcaaccggct gatgacccga aacgggcatc cgccggtacg ccgtagccgc
     6841 cagagacgcc atcggaagga gtgagcatgt ctgtacagca aatcgactgg gatctggccc
     6901 tgatccagaa atataactat tccgggccac gatacacctc gtacccgacc gcgctggagt
     6961 tttcagaaga cttcggcgaa caggcgtttt tacaagccgt ggcgcgctat cctgagcgtc
     7021 cattatctct ctacgtacat atcccgttct gccataagct ttgttacttc tgcggttgca
     7081 ataagattgt tactcgccag cagcacaagg ccgatcagta tctggacgcg ctggagcaag
     7141 aaatcgtcca tcgtgcaccg ctgttcgccg ggcgtcacgt cagccaattg cactggggcg
     7201 gcggaacgcc gacgtatctg aataaagcgc aaatcagccg cctgatgaag ctgctgcgcg
     7261 aaaacttcca gttcaatgcc gatgcggaga tttcgatcga agtcgatccg cgggaaatcg
     7321 aactggatgt actcgatcat ttacgcgccg aaggctttaa tcgcctgagc atgggcgtgc
     7381 aggacttcaa caaagaagtg caacgtctgg ttaaccgcga gcaggatgaa gagttcatct
     7441 ttgcactgct taaccatgcg cgtgagattg gttttacctc caccaacatc gacctgattt
     7501 acggcctgcc gaaacagacg ccggagagtt tcgcctttac cctgaaacgt gtggcggagc
     7561 tgaaccccga tcgtctgagt gtctttaact acgcgcatct gccgaccatt tttgctgctc
     7621 agcgcaaaat caaagatgct gacctgccga gtccgcagca aaaactcgat atcctgcagg
     7681 aaaccatcgc cttcctgacg caatcgggct atcagtttat cggtatggat cactttgccc
     7741 gtccggatga cgagctggcg gtggcccagc gtgaaggcgt gctgcatcgt aacttccagg
     7801 gctacaccac tcagggcgat accgatctgc tggggatggg cgtttccgcc atcagcatga
     7861 ttggcgactg ctacgcgcag aaccagaaag agttgaagca gtactatcag caagtggatg
     7921 aacaaggcaa tgcgctgtgg cgtggtattg cgctaacgcg tgatgactgt attcgccgcg
     7981 atgtgattaa gtcgctcatc tgcaacttcc gtctggatta cgcccctatt gagaaacagt
     8041 gggatttgca cttcgctgat tactttgcgg aagatctcaa gctgctcgcc ccgttagcaa
     8101 aagatgggct ggtggatgtg gatgagaagg gaatacaggt gacggcgaaa ggtcgcttgc
     8161 tgatccgcaa catttgcatg tgctttgata cctatctgcg ccagaaagcg cggatgcagc
     8221 agttctcacg ggtgatttga atagtgaatg gcgcttcgtt tacaaagtag aaaacgaaag
     8281 cgccatcaat gtgctgagaa caagattgcc tgatgcgcta cgcttatcag gcctacaaaa
     8341 cctgttgaaa atattgcttt tgtaggccgg ataaggcgtt cacgccgcat ccggcatgaa
     8401 caaagagcac ttcatcagca atctgaaact caactaaaca gcccaatcat tgcggcacac
     8461 agcacggcag caacggcagt ttgcggtgtg tggctgtcaa ctgcgccact cgataccaga
     8521 ttaattattg attccagcat aatgactctc cccgttttcc gggcagatca tactgaactt
     8581 atcggaacag taaagcgtaa aataccagca atttgcgctc aataatcaat ctttacacac
     8641 aagctgtgaa tcactccatc cccagctctt ttaacttacg cgtcagggtg ttgcggcccc
     8701 agccgagtag ccgcgccgct tcctgtttat gcccctgcgt atgtcgcaac gcggtcgtca
     8761 gtaacgtccg ctccagctct ggctgcgctt cggaaagcag attttgatga ccggaacgca
     8821 gcgctctgtc tgcccactgc gcaagaagcg tcgcccagct gtccggttgc atttgcgaag
     8881 tactctccgc aaccgttgat tcaaacagtt cgccgggcaa atcctgaatc aacacttcct
     8941 gcccggcggc catcaccgtt agccagcggc aggtgttttc cagctggcgc acgttgcctg
     9001 gccacgccag acgcgtcaga gcagcttcgg tttccggatg cagtaacttc gcttctacgc
     9061 ccagttcgcg cgcggcaacc tgtaaaaaat ggcgcgccag acggggaata tcttcccgac
     9121 gttcgcgcag cggcggtaga tgaacgcgga taacgtttag gcggtggaac agatcctcac
     9181 ggaacttacc ttcctgcact cgctgttcga gattctggtg agtggcagcg ataatccgca
     9241 catccacttt caccggcgca tagccgccaa cgcggtaaaa ctgaccgtct gccagcacgc
     9301 gcagcaaacg cgtctgcaca tccagcggca tatcaccaat ttcgtcgagg aataatgtac
     9361 cgccatcggc ctgttcaaaa cgcccctgac gaatggtatt cgcgccagta aacgcgcctt
     9421 tctcgtggcc aaacagttct gattcgatca aatcttttgg gatagctgcc atattcagcg
     9481 cgataaacgg tgctttggcg cgcggactgt ggcgatgcag ggcatgagcg accagttctt
     9541 taccggtgcc ggattcgccg ttaatcagca cgctaataga agaacgcgaa agccgaccga
     9601 taatacggaa cacgtcctgc atggctggcg cttcgccgat gatatcggtc gttgggccgt
     9661 taagctgaat attacgcggc tgctgctgtt cctggtaatg actgatagcg cgctcaacca
     9721 gcgccacggc ttcgtcgata tcaaacggtt tgggcagata atcaaacgcc ccttgttgat
     9781 aggcgctgac ggcagcatcc agatcggaat gtgcggtcat aatgatgacc ggaagcattg
     9841 gatggcgctg tttaatctgc ttgagcagcg ccagcccgtc cattcccggc atacggatat
     9901 ctgaaagcag cacatccggc gttttgctcg ccagcgcctc cagtacttcc gcgccgttct
     9961 caaatgtcgt acaggttaaa cccgctccag cgagcgcacg ttcaagcacc caacggatgg
    10021 aactatcgtc atcgactacc cagactatcc ctcgttgcat aaacgtcacc tttatttcct
    10081 gataggcagg taaaccgaga actcggtatg acctggccaa ctggtaaatt caattttgcc
    10141 tgaatgctga tcaatcaaat tacgggcgat ggataagcca agcccggtgc caccttcgcg
    10201 gccgctgacc atcgggtaaa acagcgtatc ctgcaaatga ggcggaatgc ccggcccgtt
    10261 atcttccaca tcaatccgcg ccgccagccg gtagcgctcg ccgtgtaagg tcagttgaaa
    10321 cgcggtgcgg gtacgcagaa tgatttcacc gccttccggc cccagcgcct gtagcgcatt
    10381 gcgcacaata ttcagcaaga cctgttcaat ttgatccggg tcgtgcgcca gttccggcag
    10441 gctgggatcg taatcacgaa tcaaccgcac gttgtccggc agttccatcg acaccagcgt
    10501 taccacgcgt tcagccactt tgtgaatact ttcggtaacg cgcgtaccgg gcagctgcgg
    10561 ccccaacaga cggtcgacca gatttcgcag ccggtccgcc tgttcgataa tcactttggt
    10621 atattcgagt agtgatgggt caggtaacgc tttgctgagc agctgcgccg cgccacgtaa
    10681 accgccaagc ggatttttaa tctcatgtgc caggccgcgc actaaatcac gggcagcaac
    10741 ctgctgggcg tgctgtagct gttcctgact taagcggcgc tggttatcca tcggagccat
    10801 ctccagcagg atcatgccgt ccggcatacg ctgggccgtc acagaaagga tatgcgagcg
    10861 cccgtcgatg accagcgtca cttcgttatc ggtaaaacct tgccccgcct ccagactttc
    10921 ttgcatcagc tcgatattta atgagaagta gctcaacagt tccggtaacg gtgtaccaaa
    10981 caatttgcgg gagctttggg cgagcagttg ttgcgcggca gggttggcgt aatggatctc
    11041 caggttgtca tcgattaaca aaatactgtt aatcagcgag ttgaggatct gcccagcatc
    11101 gggctgcgtg cctgttgcca taaagcagtc tcctgaacag gttgcaccat tttagtgcat
    11161 tatagctttt tacggataaa aagcgcgaag catcagagaa ttgacggaga aaaaagccca
    11221 tgcagagatg ggctgaaagt ttccacggca actaaatccc ggcgttgttg cgccgggtag
    11281 tacaacttca actattagac gctgtagtac agctcaaact ctaccggatg cggagtcata
    11341 cgcacgcggt catcttcttc gcgacgcaga gcgatgtacg catcaattgc ttcgtcagtg
    11401 aacacgccac cggctttcag gaactcgcgg tccagatcca gttcgttcag tgcttcttcc
    11461 agagagcctg caacctgtgg gatctctttc gcttcttctg gcggcaggtc atacaggttt
    11521 ttgtccatgg cttcacccgg atggatcttg ttcttgatac catcaagacc ggccatcagc
    11581 agggcagcaa agcacaggta cgggttagct gccggatccg ggaaacgtac ttcgatacga
    11641 cgtgctttcg gagaagaaac caccggaata cggatagacg cagaacggtt acgcgcagag
    11701 taagccagca ttaccggtgc ttcatagccc gggaccagac gcttataaga gttggtggtc
    11761 gggtttgcca gggcgttaat cgctttagcg tgtttgatta cgccgccaat gtagtacagc
    11821 gcctgctcag acagacctgc gtatttgtcg cctgcgaaca ggttaacgcc gtttttagac
    11881 agagacatgt ggcagtgcat accggagccg ttatcaccga acatcggttt tggcataaag
    11941 gtcgcggttt taccgaagcg gtgcgctacg ttgtgcacaa catatttgta gatctgaatt
    12001 tcgtcagctt ttttggtcat ggtattgaag cgggtagcca cttcgttctg accagcagtc
    12061 gctacttcgt ggtgatgggc ttcaaccacc agccccatct gttccatcac cagacacatt
    12121 tcagaacgaa tatcctgagc cgagtctacc ggtggaaccg ggaagtaacc gcctttcact
    12181 gccggacggt gacctttgtt accaccttcg tattgggtgg aggagttcca tgcgccttcg
    12241 atatcgtcga tagcaacgtg ggaaccggag atagatgatc cgaaacggat gtcatcgaac
    12301 aggaagaatt caggttctgg cccgaacagt acggtgtcgg caatgccagt ggaacgcagg
    12361 taatcttcgg cgcgcttcgc aatggagcgc gggtcacggt catagccttg cagggtgcca
    12421 ggttcaagga tgtcgcaacg gataatcagg gtggagtcgg cgaagaacgg gtcaatcact
    12481 gcggtggatg cgtctggcat cagcaccatg tcggactcgt taatgccttt ccagccgcca
    12541 atcgaggagc cgtcaaacat tttgccttct tcgaagaatt cagcattcac ctgatgagca
    12601 gggatagtga cgtgctgttc tttaccttta gtatcggtga agcgcaaatc aacaaacttc
    12661 acttcgtgct cgttcagcat cgtcagtacg tgttcagcgg acatacttta actctcctgg
    12721 attggtcatg gtcgtcgtgg taacgaaatc tgcaattatt ttggccgtgt cgccgtaaaa
    12781 aagataaagc gaaatctgtg ccaactttta aattgcccct aaaaggcgtt atcatgcgca
    12841 ccatcgtgca aaagggctgc accacgatgt gaatgttgca ccaatatagt gcttcaatgg
    12901 aaacattaag caccatgttg gtgcaatgac ctttggataa ccctttttat gctccgtgaa
    12961 agcgatcaca aagggactct gcaatacttg tttgcggagg atgtttgtga tcctgttttg
    13021 tagtgcgatt aatccgtgta caataacgcg ctatttctaa tgcctgaggc aaagttgtga
    13081 tcgaaaaatt gcgtaatatc gccatcatcg cgcacgtaga ccatggtaaa accaccctgg
    13141 tagacaagct gctccaacaa tccggtacgt tcgactctcg tgccgaaacc caagagcgcg
    13201 tgatggactc caacgatttg gagaaagagc gtgggattac catcctcgcg aaaaacaccg
    13261 ctatcaaatg gaatgattac cgtatcaaca tcgttgatac cccggggcac gccgacttcg
    13321 gtggtgaagt tgaacgtgta atgtccatgg tagactcagt gctgctggtg gttgacgcat
    13381 ttgacggccc gatgccgcaa acgcgcttcg taaccaaaaa agcgtttgct tacggcctga
    13441 agccgattgt tgttatcaac aaagttgacc gccctggcgc gcgtcctgat tgggttgtgg
    13501 atcaggtatt cgatctgttc gttaacctcg acgcgaccga cgagcagctg gacttcccga
    13561 tcgtttacgc ttctgcgctg aacggtatcg cgggtctgga ccacgaagat atggcggaag
    13621 acatgacccc gctgtaccag gcgattgttg accacgttcc tgcgccggac gttgaccttg
    13681 acggtccgtt ccagatgcag atttctcagc tcgattacaa cagctatgtt ggcgttatcg
    13741 gcattggccg catcaagcgc ggtaaagtga agccgaacca gcaggtcact atcatcgata
    13801 gcgaaggcaa aacccgcaac gcgaaagtcg gtaaagtgct gggccacctc ggtctggaac
    13861 gtatcgaaac cgacctggcg gaagctggcg atatcgttgc gatcacgggc cttggcgaac
    13921 tgaacatttc tgacaccgtt tgcgacacgc aaaacgttga agcgctgccg gcactctccg
    13981 ttgatgagcc gaccgtttct atgttcttct gcgttaacac ctcgccgttc tgcggtaaag
    14041 aaggtaagtt cgtaacgtct cgtcagatcc tggatcgtct gaacaaagaa ctggtacaca
    14101 acgttgcgct gcgcgtagaa gaaaccgaag acgctgatgc gttccgcgtt tctggtcgtg
    14161 gcgaactaca cctgtctgtt ctgatcgaaa acatgcgtcg tgaaggtttc gaactggcgg
    14221 tatcccgtcc gaaagttatc ttccgtgaaa tcgacggtcg taaacaagag ccatatgaaa
    14281 acgtgactct ggacgttgaa gaacagcatc agggttctgt aatgcaggcg ctgggcgaac
    14341 gtaaaggcga cctgaaaaac atgaatccag acggtaaagg ccgcgtacgt ctcgactacg
    14401 tgatcccaag ccgtggtctg attggcttcc gttctgagtt catgaccatg acttccggta
    14461 ctggtctgct gtactccacc ttcagccact acgacgacgt acgtccgggt gaagtgggtc
    14521 agcgtcagaa cggcgtactg atctctaacg gtcagggtaa agcggtcgcg ttcgcgctgt
    14581 tcggtctgca ggatcgcggt aagctgttcc tcggtcacgg tgcagaagtt tacgaaggtc
    14641 agattatcgg tattcatagc cgctctaacg acctgactgt aaactgcctg accggtaaga
    14701 aactgaccaa catgcgtgct tccggtactg acgaagccgt tgttctggtt ccgcctatcc
    14761 gcatgactct ggaacaagct ctggagttca tcgatgatga cgaactggta gaagtgactc
    14821 cgacctctat ccgtattcgt aaacgtcacc tgacggaaaa cgatcgtcgt cgcgccaacc
    14881 gcgcaccgaa agactattaa tttcgttttt tagttataaa aaacctgcca tcgctggcta
    14941 atgccagtca gttaagcaac tgactggctc tttttcgggg ctgtggggta tttccagggc
    15001 ctctccttta ccactctcgg gaaggccctt
//
LOCUS       DAJVSY010000100        14946 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.100, whole genome shotgun sequence.
ACCESSION   DAJVSY010000100 DAJVSY010000000
VERSION     DAJVSY010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14946
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.100"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..307)
                     /gene="hlyE"
                     /locus_tag="OQQ19_002739"
     CDS             complement(<1..307)
                     /gene="hlyE"
                     /locus_tag="OQQ19_002739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin HlyE"
                     /protein_id="HCS1804303.1"
                     /translation="MTEIVADKMVEVVKNAIETADGALDLYNKYLDQVIPWQTFDETI
                     KELSRFKQEYSQAASVLVGDIKTLLMDSQDKYFEATQTVYEWCGVATQLLAAYILLFD
                     "
     gene            680..1099
                     /locus_tag="OQQ19_002740"
     CDS             680..1099
                     /locus_tag="OQQ19_002740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translesion error-prone DNA polymerase V
                     autoproteolytic subunit"
                     /protein_id="HCS1804304.1"
                     /translation="MLFIKPADLREIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLL
                     IQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQLR
                     PTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAMR"
     gene            1099..2366
                     /gene="umuC"
                     /locus_tag="OQQ19_002741"
                     /pseudo
     CDS             1099..2366
                     /gene="umuC"
                     /locus_tag="OQQ19_002741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415702.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase V catalytic protein"
     gene            complement(2412..2942)
                     /gene="dsbB"
                     /locus_tag="OQQ19_002742"
     CDS             complement(2412..2942)
                     /gene="dsbB"
                     /locus_tag="OQQ19_002742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbB"
                     /protein_id="HCS1804305.1"
                     /translation="MLRFLNQCSQGRGAWLLMAFTALALELTALWFQHVMLLKPCVLC
                     IYERCALFGVLGAALIGAIAPKTPLRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFA
                     TCDFMVRFPEWLPLDKWVPQVFVASGDCAERQWDFLGLEMPQWLLGIFIAYLIVAVLV
                     MISQPFKAKKRDLFGR"
     gene            complement(3088..4629)
                     /gene="nhaB"
                     /locus_tag="OQQ19_002743"
     CDS             complement(3088..4629)
                     /gene="nhaB"
                     /locus_tag="OQQ19_002743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter NhaB"
                     /protein_id="HCS1804306.1"
                     /translation="MEISWGRALWRNFLGQSPDWYKLALIIFLIVNPLIFLISPFVAG
                     WLLVAEFIFTLAMALKCYPLLPGGLLAIEAVFIGMTSAEHVREEVAANLEVLLLLMFM
                     VAGIYFMKQLLLFIFTRLLLSIRSKMLLSLSFCVAAAFLSAFLDALTVVAVVISVAVG
                     FYGIYHRVASSRTEDTDLQDDSHIDKHYKVVLEQFRGFLRSLMMHAGVGTALGGVMTM
                     VGEPQNLIIAKAAGWHFGDFFLRMSPVTVPVLICGLLTCLLVEKLRWFGYGETLPEKV
                     REVLQQFDDQSRHQRTRQDKIRLIVQAIIGVWLVTALALHLAEVGLIGLSVIILATSL
                     TGVTDEHAIGKAFTESLPFTALLTVFFSVVAVIIDQQLFSPIIQFVLQASEHAQLSLF
                     YIFNGLLSSISDNVFVGTIYINEAKAAMESGAITLKQYELLAVAINTGTNLPSVATPN
                     GQAAFLFLLTSALAPLIRLSYGRMVWMALPYTLVLTLVGLLCVEFTLAPVTEWFMQMG
                     WIATL"
     gene            4851..5570
                     /gene="fadR"
                     /locus_tag="OQQ19_002744"
     CDS             4851..5570
                     /gene="fadR"
                     /locus_tag="OQQ19_002744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid metabolism transcriptional regulator
                     FadR"
                     /protein_id="HCS1804307.1"
                     /translation="MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVT
                     RTTLREVLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDNLL
                     SVRTNISTIFIRTAFRQHPDKAQEVLATANEVADHADAFAELDYNIFRGLAFASGNPI
                     YGLILNGMKGLYTRIGRHYFANPEARSLALGFYHKLSALCSEGAHDQVYETVRRYGHE
                     SGEIWHRMQKNLPGDLAIQGR"
     gene            complement(5622..7154)
                     /locus_tag="OQQ19_002745"
     CDS             complement(5622..7154)
                     /locus_tag="OQQ19_002745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpoVR family protein"
                     /protein_id="HCS1804308.1"
                     /translation="MATIDSMNKDTTRLSDGPDWTFDLLDVYLAEIDRVAKLYRLDTY
                     PHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNP
                     CIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITEC
                     EERYGVDEVERLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWR
                     TLPKREEEKTVAEARRYPSEPQENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQK
                     QTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINP
                     YALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPK
                     VMRDFRFFTVLDDDRHNYLEISAIHNEEGYREIRNRLSSQYNLSNLEPNIQIWNVDLR
                     GDRSLTLRYIPHNRAPLDRGRKEVLKHVHRLWGFDVMLEQQNEDGSVELLERCPPRMG
                     NL"
     gene            7484..8782
                     /gene="dadA"
                     /locus_tag="OQQ19_002746"
     CDS             7484..8782
                     /gene="dadA"
                     /locus_tag="OQQ19_002746"
                     /EC_number="1.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HCS1804309.1"
                     /translation="MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANA
                     GQISPGYAAPWAAPGVPLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYM
                     ENKGRMVRLAEYSRDCLKALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDA
                     GVPYQLLESSRLAEVEPALAEVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKF
                     RFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYS
                     LTIPIAQEDGAPVSTILDETYKIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMV
                     VRDLYPRGGHVEQATFWTGLRPMTPDGTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQ
                     LLSDLLSGRTPAIPYEDLSVARYSRGFTPSRPGHLHGAHS"
     gene            8792..9851
                     /gene="dadX"
                     /locus_tag="OQQ19_002747"
                     /pseudo
     CDS             8792..9851
                     /gene="dadX"
                     /locus_tag="OQQ19_002747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309712.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="catabolic alanine racemase DadX"
     gene            complement(10238..11974)
                     /locus_tag="OQQ19_002748"
     CDS             complement(10238..11974)
                     /locus_tag="OQQ19_002748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309713.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium/proton antiporter"
                     /protein_id="HCS1804310.1"
                     /translation="MDATTIISLFILGSILVTSSILLSSFSSRLGIPILVIFLAIGML
                     AGVDGVGGIPFDNYPFAYMVSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLI
                     TSGLTGMMAAWLFNLDLIEGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGS
                     NDPMAVFLTITLIAMIQQHESSVSWMFVVDILQQFGLGIVIGLGGGYLLLQMINRIAL
                     PAGLYPLLALSGGILIFALTTALEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAW
                     LAQIAMFLVLGLLVNPSDLLPIAIPALILSAWMIFFARPLSVFAGLLPFRGFNLRERV
                     FISWVGLRGAVPIILAVFPMMAGLENARLFFNVAFFVVLVSLLLQGTSLSWAAKKAKV
                     VVPPVGRPVSRVGLDIHPENPWEQFVYQLSADKWCVGAALRDLHMPKETRIAALFRDN
                     QLLHPTGSTRLREGDVLCVIGRERDLPALGKLFSQSPPVALDQRFFGDFILEASAKYA
                     DVALIYGLEDGREYRDKQQTLGEIVQQLLGTAPVVGDQVEFAGMIWTVAEKEDNEVLK
                     IGVRVAEEEAES"
     gene            complement(12069..12983)
                     /gene="ldcA"
                     /locus_tag="OQQ19_002749"
     CDS             complement(12069..12983)
                     /gene="ldcA"
                     /locus_tag="OQQ19_002749"
                     /EC_number="3.4.17.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="muramoyltetrapeptide carboxypeptidase"
                     /protein_id="HCS1804311.1"
                     /translation="MSLFHLIAPSGYSIKQHAALRGIQRLTDAGHQVNNVEVIARRCE
                     RFAGTETERLEDLNSLARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLI
                     CGHSDFTAIQCGLLAQGNVITFSGPMLVANFGADELNAFTEHHFWLALRNKTFTIEWQ
                     GEGPTCQTEGTLWGGNLAMLISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYH
                     AGILPRQKAIILGSFSGSTPNDYDAGYNLESVSAFLRSRLSIPLITGLDFGHEQRTVT
                     LPLGAHAILNNTREGTQLTISGHPVLKM"
     gene            13083..13694
                     /gene="emtA"
                     /locus_tag="OQQ19_002750"
     CDS             13083..13694
                     /gene="emtA"
                     /locus_tag="OQQ19_002750"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309714.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     EmtA"
                     /protein_id="HCS1804312.1"
                     /translation="MKLRWFAFLIVLLAGCSSKHDYTNPPWNAKVPVQRAMQWMPISQ
                     KAGAAWGVDPQLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWSGEP
                     TTSELKNPERNISMGAAYLNILETGPLAGIEDPKVLQYALVVSYANGAGALLRTFSSD
                     RKKAISKINDLDADEFLDHVARNHPAPQAPRYIYKLEQALDAM"
     gene            complement(13696..14430)
                     /locus_tag="OQQ19_002751"
     CDS             complement(13696..14430)
                     /locus_tag="OQQ19_002751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar brake protein"
                     /protein_id="HCS1804313.1"
                     /translation="MSHYHEQFLKQNPLAVLGVLRDLHKAAIPLRLSWNGGQLISKIL
                     AITPDKLVLDFGSQAEDNIAVLKAQHITITAETQGAKVEFTVEQLQQSEYLQLPAFIT
                     VPPPTLWFVQRRRYFRISAPLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKP
                     AELQEGMRFAQIEVNMGQWGVFHFDAQLISISERKVIDGKNETITTPRLSFRFLNVSP
                     TVERQLQRIIFSLEREAREKADKVRD"
     gene            14631..14885
                     /locus_tag="OQQ19_002752"
     CDS             14631..14885
                     /locus_tag="OQQ19_002752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HCS1804314.1"
                     /translation="MGIIAWIIFGLIAGIIAKLIMPGRDGGGFFQTCILGIVGAVVGG
                     WLATMFGIGGSISGFNLHSFLVAVVGAILVLGLFRLLRRE"
BASE COUNT         3812 a         3713 c         3874 g         3547 t
ORIGIN      
        1 catcaaatag caaaatatac gctgcgagca attgcgtcgc aacaccacac cattcataca
       61 ctgtttgggt tgcttcaaaa tacttatcct ggctatccat aagtaaggtt ttaatatcgc
      121 cgactaaaac ggaggctgcc tgtgaatact cctgtttaaa gcgacttaac tcttttatgg
      181 tttcatcaaa ggtctgccag gggatgacct gatcgagata tttattataa agatctaatg
      241 ctccatctgc ggtttcgatt gcgtttttaa ctacttctac cattttatct gcaacgattt
      301 cagtcataat cattcgcctc tttaaatata taaattgtaa tgaaactcct gttttacaac
      361 tattaataaa ttttacttca tctaattcat agttagccgg gtgggatgcg tcaatgtctt
      421 tatttctatt aatatgataa atatcaaaca atgtttaatg tcattatggc gaatgcttct
      481 attctatttt tttgccgggt gatatttttc atttctgctg gatgagcgtc gtcgccagaa
      541 ggccacgtga gcacaggata agagaacgaa aaatcagcag tctatacagc gacaaatatt
      601 gatagcctga atcagtattg atctgctggc aagaatagac tactgtatat aaaaacagta
      661 taacttcagg cagattatta tgttgtttat caagcctgcg gatctccgcg aaattgtgac
      721 ttttccgcta tttagcgatc ttgttcagtg tggctttcct tcaccggcag cagattacgt
      781 cgaacagcgc atcgatctga atcaactgtt gatccagcat cccagcgcga cttacttcgt
      841 caaagcaagt ggtgattcta tgattgatgg tggaattagt gacggtgatt tactgattgt
      901 cgatagcgct attaccgcca gccatggtga tattgtcatc gctgctgttg acggcgagtt
      961 tacggtgaaa aaattgcaac tacgcccgac ggtacagctt attcccatga acagtgcgta
     1021 ctcgcccatt accatcagta gcgaagatac gctggatgtc tttggtgtgg tgatccacgt
     1081 cgttaaggcg atgcgctgat gtttgctctc tgtgatgtaa acgcgtttta tgccagctgt
     1141 gagacggtgt ttcgccctga tttatggggt aaaccggtgg ttgtactatc gaataatgac
     1201 ggttgcgtta tcgcccgaaa cgctgaggca aaggcgctgg gtgttaaaat gggcgatccc
     1261 tggttcaaac aaaaagatct gtttcgtcgc tgtggtgtgg tttgctttag cagcaattat
     1321 gagctttacg cagacatgag caatcgggtt atgtcgacgc tggaagaact atcgccccgc
     1381 gtcgagattt acagtattga tgaggcattc tgcgatctga caggtgtgcg taattgtcgc
     1441 gatctgactg attttggcag agaaattcgc gcaacggtgc tacaacgtac ccatcttact
     1501 gttggtgtgg ggatcgccca gaccaaaacg ctggctaagc ttgccaatca tgcggcaaaa
     1561 aaatggcagc ggcagacggg ggggtggtgg atttatcaaa tctggaacgc cagcgtaaat
     1621 taatgtctgc tctccccgtg gatgacgtct gggggattgg acggcggatc agcaaaaaac
     1681 tggacgcgat ggggatcaaa accgttcttg atttggcgga tacagatatc cggtttatcc
     1741 gtaaacattt taatgtcgtg ctcgaaagaa cggtgcgtga actgcgcggt gaaccctgtt
     1801 tgcaactgga agaatttgca ccgacaaagc aggaaattat ctgttcccgc tcgtttggtg
     1861 aacgtatcac ggattatacg tcgatgcggc aggccatttg tagttacgct gcccgggcgg
     1921 cggaaaaact tcgcagtgag catcaatatt gtcggtttat ctccacattt attaagacgt
     1981 caccatttgc gctcaatgaa ccttattacg gcaatagcgc gtcggtaaaa ctgctgacgc
     2041 ccactcagga cagcagggat atcattaacg ccgctacgcg atctctggat gccatctggc
     2101 aagcgggcca tcgctaccaa aaagcgggcg tgatgctggg ggatttcttc agtcagggag
     2161 tcgcgcagct caatttattc gatgacaacg caccgcgccc cgggagtgag caattgatga
     2221 cggtaatgga tacactgaat gctaaagagg gcagaggaac actctatttt gccgggcagg
     2281 ggatccaaca acaatggcag atgaagcgag ccatgctttc accacgttat acaacgcgaa
     2341 gttctgattt actgcgggtc aaataaatat agcggcagga aaaaagtgct cccgcaggag
     2401 cgccgaatgg attagcgacc gaacagatca cgttttttcg ctttaaacgg ctgggaaatc
     2461 atcaccagca ccgcgacaat caggtaagcg ataaaaatac cgagcagcca ctgcggcatt
     2521 tccagaccta aaaaatccca ctgacgctcg gcgcaatcgc cagaggcgac aaacacttgc
     2581 ggcacccatt tatccagcgg cagccattcc gggaaacgaa ccataaaatc acaggtggca
     2641 aacggcgaag gatagagctg aagcatggtg tgctcgtaag ttaactgcac accgcggaac
     2701 gcactataca accagataac catcgctaca taacgcagcg gagttttcgg ggcgatcgcg
     2761 ccaatcagcg cagcacccag aacgccgaat aacgcgcagc gttcataaat acagagcacg
     2821 caaggtttca gtaacatcac atgctggaac cacagcgccg tcagttccag tgccagagca
     2881 gtaaacgcca tcaacagcca cgcgccccgg ccttgtgaac attggttcaa aaatcgcaac
     2941 ataatcattt ccctgcaata tgcatagagt gcgcagttta aaccaattca ttcgctgcgc
     3001 caccaggagg cagcaaaaat aggacgcaat tggacaatta tcgggcgaaa aggcaaaccg
     3061 ggcatttata tgcccggtaa gttgttatca aagcgttgct atccagccca tttgcataaa
     3121 ccattcggtt acaggggcaa gcgtaaactc gacgcagagc agcccgacga gtgtcaggac
     3181 gagggtgtaa ggcagggcca tccacaccat gcggccataa gagaggcgaa tcaatggcgc
     3241 gagtgcagag gtcagcagga acaggaacgc agcctgaccg ttcggcgtag cgacagaggg
     3301 cagattggta ccggtattaa tggcgaccgc cagcagctcg tattgcttca acgtgatagc
     3361 gccactttcc attgccgctt tcgcttcgtt gatataaatc gtccccacga agacgttatc
     3421 cgaaatggat gacagcagac cgttgaaaat atagaacaac gacagctgag catgttccga
     3481 tgcctgcaac acaaactgaa taatcggcga aaacagttgt tggtcgataa tcaccgcgac
     3541 taccgagaaa aacaccgtca acagtgcggt gaatggcaga gattcggtga aggctttacc
     3601 gatagcatgt tcatcggtga caccggtcaa tgatgtcgcc agaataatga ccgacaaacc
     3661 aatcaagcca acctccgcca gatgcaacgc cagcgcagtc accagccaga cgccgataat
     3721 cgcctggaca atcagacgga ttttatcctg acgggtacgc tggtggcggc tttgatcgtc
     3781 aaactgttgc aacacttcgc ggactttctc cggcagcgtt tcaccgtagc caaaccaacg
     3841 cagcttctct accagcaggc aggttaacag gccacaaatc agaaccggaa cggtcaccgg
     3901 cgacatgcgc aggaagaaat cgccaaaatg ccagccagcc gctttagcga tgatcaggtt
     3961 ctgtggttcg cccaccatgg tcattacgcc gcctaatgcg gtgccgacac cggcatgcat
     4021 catcaggcta cgcagaaagc cacggaactg ttccagaacc actttgtaat gcttgtcgat
     4081 atgactatcg tcttgcaggt cggtatcttc agtacgggaa gaggctacgc ggtgataaat
     4141 accataaaaa ccgactgcaa cgctgatcac caccgccacg acggttaagg catcgaggaa
     4201 cgcggagagg aacgccgccg ccacgcaaaa agagagcgac agcagcattt tggaacgaat
     4261 gcttaacagc aaacgggtaa atatgaacag caatagctgt ttcataaaat agatacccgc
     4321 caccataaac atcagtaaca gcaagacttc aagatttgcc gccacctctt cacggacgtg
     4381 ttccgcgctg gtcatgccga tgaataccgc ttcaatagcc aacagaccac cggggagtag
     4441 cgggtagcat ttcagggcca tcgccagagt gaaaataaat tccgctacca gcaaccagcc
     4501 agcgacgaaa gggctgatga ggaaaattaa cggatttacg attaagaaaa tgatgagggc
     4561 gagtttgtac cagtcggggg actggcccaa aaaattgcgc catagcgcgc ggccccagga
     4621 gatctccatg atggtttccc ttaccttaca aataatcaat gatgttttta tgtttaaacg
     4681 caaagcttaa cggtcaggca ggagtgaggc aagtcttgat agtcaagggg aaagagatgc
     4741 ggaaaatgaa gccttgatcc cttttttctt ctttttgtct gctatcagcg tagttagccc
     4801 tctggtatga tgagtccaac tttgttttgc tgtgttatgg aaatctcact atggtcatta
     4861 aggcgcaaag cccggcgggt ttcgcggaag agtacattat tgaaagtatc tggaataacc
     4921 gcttccctcc cgggactatt ttgcccgcag aacgtgaact ttcagaatta attggcgtaa
     4981 cgcgtactac gttacgtgaa gtgttacagc gtctggcacg agatggctgg ttgaccattc
     5041 aacatggcaa gccgacgaag gtgaataatt tctgggaaac ctctggttta aatatccttg
     5101 aaacactggc gcgactggat cacgaaagtg tgccgcagct tattgataat ttgctgtcgg
     5161 tgcgtaccaa tatttccact atttttattc gcaccgcgtt tcgtcagcat cccgataaag
     5221 cgcaggaagt gctggctacc gctaatgaag tggccgatca cgccgatgcc tttgccgagc
     5281 tggattacaa catattccgc ggcctggcgt ttgcttccgg caacccgatt tacggtctga
     5341 tccttaacgg gatgaaaggg ctgtatacgc gcattggtcg tcactatttc gccaatccgg
     5401 aagcgcgcag tctggcgctg ggcttctacc acaaactgtc ggcgttgtgc agtgaaggcg
     5461 cgcacgatca ggtgtacgaa acagtgcgtc gctatgggca tgagagtggc gagatttggc
     5521 accggatgca gaaaaatctg ccgggtgatt tagccattca ggggcgataa tcccttccgt
     5581 ttaaaaagca aacccctcaa acgaggggtt ttttgttgtt tttacagatt tcccattctt
     5641 ggcgggcaac gttccagcaa ctcgacgctg ccatcttcgt tttgctgttc cagcatcaca
     5701 tcaaatcccc acaggcgatg cacatgcttc agcacttctt tgcgcccccg atccagcggt
     5761 gcgcgattat gtggaatgta acgcagcgtc agcgaacggt cgccgcgcaa atccacgttc
     5821 cagatctgaa tattcggctc cagattactt aagttatatt gcgacgataa ccggttacgg
     5881 atctcccgat aaccttcttc attatgaata gcggaaatct ccagataatt atgccgatcg
     5941 tcatccagca cggtgaagaa gcggaaatca cgcatcactt tcggtgacag aaactggctg
     6001 ataaaactct catctttgaa atcacgcatc gcgaaatgca gcgtttccag ccagtcggaa
     6061 ccggcgatat ccgggaacca gtatttgtct tcttccgttg gcgactgaca aatccgttta
     6121 atatcctgga acatggcgaa cccgagggca tacgggttga tgccgctgta ccacgggctg
     6181 ttataggggg gctggaagac cacattggtg tggctgtgca aaaactccag cataaaacgt
     6241 tccgttactt tcccttcatc atacagatgg ttaaggatgg tgtagtgcca gaaggtggcc
     6301 cagccttcgt tcatcacctg agtctgtttt tgcggataaa aatactggct caccttacgc
     6361 acaatacgca ggatttcacg ctgccatgat tccagcagtg gcgcattttt ctccataaaa
     6421 tagagcaggt tttcttgtgg ttcggacgga tagcggcgcg cttcagcaac cgttttctct
     6481 tcctcgcgct tcggcagggt acgccagagc atattgacct gactttgtag atactcttcg
     6541 cgacttttct gccgggcttt ctcttcttgc agcgagattt tttgcgggcg tttgtaccgg
     6601 tccacgccgt agttcatcag cgcgtggcac gagtccagaa gccgttctac ttcatccacg
     6661 ccataacgtt cttcgcactc ggtaatatat ttacgggcaa aaatcagata atcgacaatc
     6721 gaactggcgt cggtccaact gcggaataag taattgtttt taaagaaaga gttatgccca
     6781 tagcaggcgt gtgccatcac cagcgcttgc atggtaatgg tgttctcttc catcaggtaa
     6841 gcgatacacg ggttagagtt aatgacgatt tcataggcca gtccttgctg accgtgctta
     6901 tacagccgtt cagtctcgat aaacttttta ccgaatgacc agtgcggata gttaattggc
     6961 atgccgacgc tggagtaggc atccatcatc tgttctgagg ttatcacttc aatctggtgc
     7021 gggtaggtat ccagccggta gagtttcgcc acccggtcta tctctgccag ataaacatcc
     7081 agcaggtcga acgtccagtc gggtccatcg ctcaaccgtg tggtgtcctt attcatagaa
     7141 tcgatcgtcg ccatacgcgc acctcattgt tgtcggcgct ctctgtgtgg agcacctcat
     7201 ttcaagcata gaacacctgt taaaaaccgc gtcgccggag aatttttttc tttgcgattt
     7261 cttattatca gagtgccact aatccgcttc tgaacggaat tttatgctgg ataaaaaggg
     7321 cgttcagcag gagatactaa agacgccata ttgccgcaga gtcagggaga tgtgagccag
     7381 ctcaccataa aaaagctgta tgttgaataa tattttcaac tgagttatca agatgtaatt
     7441 agattattat tcttttactg tatctaccgt tatcggagtg gctatgcgag ttgtcatact
     7501 gggaagtggt gtggtaggcg ttgccagcgc ctggtactta aatcaggcag gacatgaggt
     7561 caccgtcatt gatcgggagc cgggggccgc cctggaaacc agcgccgcga atgccgggca
     7621 aatctccccc ggatatgctg caccgtgggc ggcaccaggt gtgcctttaa aagcgatcaa
     7681 atggatgttc cagcgccatg cgccgctggc ggttcgtctc gacggtacgc agtttcagtt
     7741 gaaatggatg tggcaaatgt tacgtaactg cgacaccagc cactacatgg aaaacaaagg
     7801 gcggatggtg cgtctggcgg aatacagccg tgattgcctg aaagcattgc gcgccgaaac
     7861 caatattcag tatgaagggc gtcagggtgg gacgctgcaa ctgttccgta ccgaacaaca
     7921 gtatgaaaat gcgacccgcg atatcgccgt gctggaagat gccggcgtac cgtatcagct
     7981 gctggaatcc agccgcctgg cggaagtgga gccagcgctg gcagaagtag cgcacaaact
     8041 gacgggtggt ctgcaactgc ccaatgatga aaccggagac tgccagctgt ttacccagaa
     8101 tctggcgcgg atggcagagc aggcgggggt taaattccgc tttaatacgc ccgttgacca
     8161 actgctttgc gacggcgagc aaatctacgg cgtgaagtgt ggcgatgaag tgattaaggc
     8221 cgatgcgtat gtgatggcgt ttggttctta ctcgacggcg atgctcaaag gcattgttga
     8281 tattccggtg tatccgctga aaggctactc gctgactatt ccaattgcgc aggaagatgg
     8341 tgcgccagta tccaccattc ttgatgaaac ctacaaaatc gccattaccc gtttcgataa
     8401 ccgcattcgt gttggcggaa tggcggaaat tgttggtttt aacaccgagc tgttgcaacc
     8461 gcgtcgtgaa acgctggaaa tggtggttcg cgatctctat ccacgcggcg gtcatgtcga
     8521 gcaggcgact ttctggacgg gtttgcgccc gatgacgcca gacggtacgc cggttgtcgg
     8581 gcgtacacgc tttaaaaatc tgtggctgaa taccggtcac ggcacgctcg gctggacgat
     8641 ggcttgcggt tccggtcagt tgttaagcga tctgctctct ggtcgcacgc cagcgatccc
     8701 atatgaggat ctaagcgtag cgcgctacag ccgtggattt acgccatcac gtccgggcca
     8761 tttacatggc gcacacagct aaggaaacga gatgacccgt ccgatacagg ccagcctcga
     8821 tctgcaggca ttaaaacaga atctgtccat tgtccgccag gccgcgccgc acgcgggtgg
     8881 taaaagcgaa cgcttacggg catggtattg agcgtatctg gagcgcgctc ggggccaccg
     8941 atggctttgc attacttaac ctggaagagg caataacgtt acgtgagcgc ggctggaagg
     9001 ggccgatcct gatgctggaa ggatttttcc atgctcagga tctggagatt tatgaccagc
     9061 accgcctgac cacctgcgta cacagcaact ggcagctcaa agcactgcaa aatgcgcggc
     9121 taaaagcacc gttggatatt tatcttaaag tgaacagtgg gatgaatcgg ttgggcttcc
     9181 agcccgatcg cgtgcttacc gtctggcagc agttgcgggc aatggcgaat gttggcgaga
     9241 tgatcctgat gtcgcatttt gccgaagcgg aacatcctga tggaatttcc agcgcgatgg
     9301 cgcgtattga gcaggcggcg gaagggctgg agtgtcggcg ttcgttgtcc aattcggcgg
     9361 cgactctgtg gcacccggaa gcgcattttg actgggttcg gcctggcatt attttgtatg
     9421 gcgcttcgcc gtccggtcag tggcgtgata tcgccaatac cggattacgt ccggtgatga
     9481 cgctaagcag tgagattatt ggtgtccaga cgctaaaagc gggtgagcgt gtgggctacg
     9541 gcggtcgcta tactgcgcgc gatgaacagc gaatcggcat tgtcgccgca gggtacgccg
     9601 acggttatcc gcgccacgcg cctaccggta cccctgtttt agtggacggc gtgcgcacca
     9661 tgacggtggg gaccgtctcg atggatatgc tggcggtcga tttaacgcct tgcccgcagg
     9721 cgggtattgg tacgccggtt gagctgtggg gcaaggagat caaaattgat gatgtcgccg
     9781 ccgctgccgg aacggtgggc tatgagttga tgtgcgcgct ggcgctacgc gtcccggttg
     9841 tgacggtgta acttgttgta agccggatcg gaggcaacgt cttctgggtg caaaaaaaat
     9901 catccatccg gctggtcagc aactgtagtt gttaatgtga cagagccatt gcccatgata
     9961 gtgtccatta aaaggatgga cactatttcc ccggaacctg aactcaccgc acaggcgttc
    10021 tacataaaac gcttacgctt cattgttgac tcggagtcga cttcagataa atcacgcttt
    10081 acccttgatg gagcctgtac atagatttgt gtaattgcct gattttgata tgttcaattc
    10141 aacatcaaat gaaggttaaa ttatggacga caaacaattg caggctcagg ctgcgttcag
    10201 caaagcatcg caaccggcga tagatgcttc attaaattta agattcagct tcctcttcag
    10261 ccacccgtac gccaatcttc aacacttcat tatcttcttt ctcggccacc gtccagatca
    10321 tcccggcaaa ctctacctgg tcaccgacaa ccggtgccgt gcctaacaac tgctggacaa
    10381 tttcacccag cgtttgctgc ttatcacgat attctcgccc gtcttccagg ccatatatca
    10441 gcgcaacatc agcatatttg gcgctggctt cgagaatgaa gtcaccaaag aagcgttgat
    10501 ccagcgcgac cggcggcgac tggctgaaca gtttaccgag cgccggaaga tcgcgttccc
    10561 gaccaattac acacaacaca tcgccttcgc gcagtcgggt gctgccggta ggatgaagca
    10621 actggttatc acgaaacagt gccgcaatac gcgtctcttt tggcatatgc aaatcgcgca
    10681 gtgccgcgcc cacgcaccat ttatcggcac tcaattgata aacaaactgc tcccacggat
    10741 tttccggatg aatatccagg ccaacgcgtg acaccggacg tcccactggc ggaaccacca
    10801 ctttggcttt tttagccgcc cacgagagtg atgttccctg caagagcagt gaaaccagaa
    10861 ccacaaagaa ggcgacatta aagaacagac gtgcattctc cagccccgcc atcatcggga
    10921 acacggccag gatgattggc accgcgccgc gtaatcctac ccagctgata aacacgcgct
    10981 cacgcagatt gaaaccgcgg aaggggagca atccagcaaa taccgaaagg ggacgggcga
    11041 agaatatcat ccatgccgac aaaattagcg ccggaatggc aataggcagc agatcgcttg
    11101 ggttaaccaa tagccccagc accaggaaca tggcgatttg cgccagccag gcgaggccgt
    11161 cgaaattttg caggatgccg tagcggttgc gaatcggccg attacccagc agaaaaccgc
    11221 acagataaac agccagaata ccgctgcctt ccagcgccgt ggttaaagca aaaattaaaa
    11281 taccgccgct taatgccagc aatggatata atccggcagg cagggcgatg cgattaatca
    11341 tttgcagcag taaataacca ccgccaagtc cgatgacaat cccgaggcca aattgctgca
    11401 gaatatcgac cacgaacatc caactgacac tgctttcatg ttgctggatc atcgcaatca
    11461 gggtaatcgt cagaaagacc gccattggat cattactgcc ggattcaatt tccagcgtcg
    11521 agccaacacg ttcgttaagc cccttaccac ccagcagaga aaagaccgct gcagcatcgg
    11581 tagagccgac gatagcgccg attaataagc cttcaatcaa atcaagatta aacagccacg
    11641 ccgccatcat gccggttaaa ccagaggtga taagcacgcc cagcgtcgcc agcgacagtg
    11701 ccggtcctaa cgccacacga aaggaactgg cctgagtgcg catcccgccg tcgagcaaaa
    11761 taatcgccag tgccaggtta cttaccatgt aggcgaaggg gtaattatca aacgggatac
    11821 cgccgacgcc atcgactcct gccagcatgc cgatcgccag aaaaataacc agaataggaa
    11881 tgccaagacg ggaagaaaat gaactaagta atatactgct ggtgacaagg atggatccta
    11941 agatgaaaag gctaattatt gttgtggcat ccaacggtcg gttactcctg attacgctgt
    12001 ctcttatata aaccctacca tattagcggc agagacagcg ttttacttag ccctgaagcg
    12061 tgattttttt acattttaag aacaggatga ccgctaatcg tcaactgagt gccttcccgg
    12121 gtgttattca gaatggcatg tgcgcccaac ggcagcgtaa ccgtgcgttg ttcatgacca
    12181 aaatcgaggc cggtaatgag tggaatcgac aggcgggaac gcaaaaacgc ggacactgac
    12241 tccaggttgt aacctgcgtc ataatcattg ggcgtgctgc cgctaaagct accgagaata
    12301 atcgccttct gacgtggcaa aattcccgca tgatagagct gcaacagcat acgttcgacg
    12361 cggaaagggt gctcgttaat atcttccagt accaggatac cgttctcaat ttttggcatc
    12421 cacggtgtac caatcagtga aatcagcatc gcaagattgc ctccccacaa cgtgccttcg
    12481 gtctgacatg tcgggccttc cccttgccat tcaatggtga aggttttatt gcgtaacgcc
    12541 agccagaaat ggtgctcggt aaaggcgttc agttcatccg caccaaagtt tgctaccagc
    12601 atggggccgc taaaggtgat gacattgcct tgcgccagaa gaccgcactg aatggcggta
    12661 aaatcgctat gtccgcaaat gagtaacggg tcatgttgtt ggcgagccac cagtgcctgc
    12721 cagtcaatat ctgccagtaa acgactggca ccgtaaccgc cgcgtacagc cagcacgatg
    12781 gtgttgggtg tagtcagtct ggcaagggaa ttgagatctt ccagacgctc cgtttccgta
    12841 cccgcaaaac gctcacaacg acgggcaata acctcgacgt tattgacttg atgccccgcg
    12901 tcggtaaggc gctggatacc acgcagcgcg gcgtgctgtt taatgctgta acccgatggg
    12961 gcaattaagt gaaacagaga catggcaatt ccttgctgac aacagaaacg aaatgtatat
    13021 catgccgctt aggtgtgccg ttgtcacctc aacggcgatt ccaggctata aggatagaag
    13081 aagtgaaatt gagatggttt gcctttttga ttgtgttatt agcgggttgt tcatcaaagc
    13141 atgactatac gaacccgccg tggaacgcga aagttccggt gcaacgtgcg atgcagtgga
    13201 tgccaataag ccagaaagcc ggtgcagcct ggggcgtcga tccacaattg atcacggcga
    13261 ttatcgctat cgaatcgggt ggtaatccga acgcggtgag taaatcgaat gccattggtt
    13321 tgatgcagtt aaaagcttca acctccggac gtgatgttta tcgccgtatg ggctggagtg
    13381 gtgagccgac gaccagcgag ctgaaaaatc cagagcgtaa tatttcaatg ggggcggctt
    13441 acctgaatat tctggaaacc ggcccgctgg caggcattga agatccgaag gtactgcaat
    13501 atgcgctggt ggtgtcatac gctaacgggg caggtgcgct gctacggact ttctcgtcag
    13561 atcggaaaaa ggcgatcagc aaaatcaacg atttggatgc tgacgagttc ctcgatcacg
    13621 tagcgcgcaa tcatcctgcg ccgcaggctc cgcgctatat ctacaaactt gagcaggcac
    13681 tggacgcgat gtaaatcagt cgcgtacttt gtccgctttc tcccgggctt cccgctcgag
    13741 agagaaaata atccgttgta attgccgctc caccgtcggg ctgacgttaa gaaaacggaa
    13801 gctcagacgg ggagtggtga tggtttcatt cttgccatca atcactttgc gctcgctgat
    13861 ggagattaac tgggcgtcaa agtgaaaaac accccattgc cccatgttga cttcaatctg
    13921 agcgaagcgc atgccttctt gtaattcggc aggctttgct gtttccagta atgcgcccat
    13981 gccgcctaac gacaaatcat acaggcggaa acgtaacgta ctgttatccg ccagtttggt
    14041 ctggcaaaaa taaggcggat ggagtggggc ggagatgcgg aaatatcggc gtcgttgtac
    14101 aaaccataag gtgggaggcg gtacggtaat aaatgccgga agctgcaagt attcactctg
    14161 ctgtagttgt tcaacagtaa actcgacttt cgcaccctga gtttcggcgg taatggtaat
    14221 atgctgcgcc tttagcacgg cgatgttgtc ttcggcttga ctgccgaaat ccagcaccag
    14281 tttatccggg gttattgcca gtattttgct gatcagctgc ccgccattcc aactgagacg
    14341 caaaggaatt gcggctttgt gcaaatcgcg taacacgccc aggacggcta acggattttg
    14401 tttcaggaac tgctcatggt aatgactcac gcggaaaaac tcctgactga caaactgtct
    14461 ttggtttatc ggtcacagtt aacaaaactt aatacaaatg cgtgaatatt ttttacatgt
    14521 tgttcttaaa tcagccgaca tacgcccagc atcgatcccg cccttgccta tacttagagc
    14581 gttgacgtaa gcatttcttg cgtccgattc atcgaaacga gggcttgaac atgggaatta
    14641 ttgcctggat tatttttggc ctgatagccg gcattatcgc caagctaatc atgccggggc
    14701 gtgatggtgg tggatttttc cagacctgta ttctcgggat agtcggtgcg gtggtcggcg
    14761 gctggctggc gaccatgttt ggcattggcg gctccatcag cggttttaat ttgcacagct
    14821 tcctggtggc ggtggtggga gctattctcg ttctgggctt attccgcctg ctgcgaagag
    14881 aataagattt tcataaggcg gatagcgata cagatgccgc tatccgcttt tcacatcaga
    14941 acgtat
//
LOCUS       DAJVSY010000101        14887 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.101, whole genome shotgun sequence.
ACCESSION   DAJVSY010000101 DAJVSY010000000
VERSION     DAJVSY010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14887)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14887)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14887
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.101"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..1616)
                     /locus_tag="OQQ19_002753"
     CDS             complement(<1..1616)
                     /locus_tag="OQQ19_002753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000108506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HCS1804315.1"
                     /translation="MSTTTRKFKTIITDTGAKKLAQVAAPDGKPVRLTHMAVGDGGGT
                     LPTPDSKQTRLVHEVWRHTVNRVILDATHQNRIIAELVIPPETGGFWIREIGVFDEHG
                     DLIAVGNTAESYKPAVAEGSGRAQTFRTILTVSSTATVALTVDNTMVMATVDYVDDKL
                     KEHEQSRRHPDASLTAKGFVQLSSATNSVSETQAATPKAVKAAYDLANGKYTAQDAST
                     TRKGLVQLSSATNSTSETQAATPKAVKAAYDLANAKYTAQDATTAQKGIVQLSSATNS
                     TSETLAATSKAVKAVMDETNKKAPLNSPALTGTPTTPAARQGTNNTQIASTAFVMAAI
                     AALVDSSPDALNTLNELAAALGNAPNFATTMTNALAGKQPKDATLTALAGLATAADRF
                     PYFTGNDVASLATLTKVGRDILAKSTVAAVIEYLGLQETVNRAGNAVQKNGDTLSGGL
                     TFENDSILAWIRNTDWAKIGFKNDADGDTDSYMWFETGDNGNEYFKWRSRQSTTTKDL
                     MTLKWDALNILVNAVINGSLGVGSTNALGG"
     gene            complement(1619..2149)
                     /locus_tag="OQQ19_002754"
     CDS             complement(1619..2149)
                     /locus_tag="OQQ19_002754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000071700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HCS1804316.1"
                     /translation="MSNSLLPPSASNFMRCAEAVGTRITDIPVDLNTLWSPDTCPVHL
                     LPYLAWAFSVDRWDRNWPEETKRQVIRDAWLIHRHKGTISALRRAIEPLGYLIRVSEW
                     WEFGGEPGTFTVEVGTLDSGVTEEMYLEMERLIADARPVSRHMTGLNIIQEIPGDIFA
                     AAATYDGEVITIYPGD"
     gene            complement(2142..3038)
                     /locus_tag="OQQ19_002755"
     CDS             complement(2142..3038)
                     /locus_tag="OQQ19_002755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001297572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HCS1804317.1"
                     /translation="MPAVDLSQLPEPAIIAEPDFEAILADTKAMMIASYPAEQREAVS
                     AALELESEPLNVIAQTMSFREMLLRQRVNEGARACMLSHSAGTDLDNLAGNMNTKRLV
                     ITPATDTTDAVMESDTSLRLRAQRAYDGLSVAGPSGAYEYFARSASGLVRDARAISPS
                     PANVTVSILSTEGDGTATEALLNTVRAVLNAEDTRPVADRLTVQSARIVTWRLNAKLY
                     FYPGPESEPILAAAESSFRKWLAEQGLIGQDVALSAIAAALHVHGVQRVEIIEPTQNM
                     AISDIQAARCESFTISEGGRNE"
     gene            complement(3042..3371)
                     /locus_tag="OQQ19_002756"
     CDS             complement(3042..3371)
                     /locus_tag="OQQ19_002756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001705832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HCS1804318.1"
                     /translation="MNPDGTGNLNDMEHLKQSVRDILTTPLASRVMRREYGSLVPDLI
                     DEPMNNTTRLQCMSAAVIALTRWEPRIALDAIDVVWKAGGRAGVTLSGTVMQTMQNVE
                     LTITLRE"
     gene            complement(3389..3955)
                     /locus_tag="OQQ19_002757"
     CDS             complement(3389..3955)
                     /locus_tag="OQQ19_002757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HCS1804319.1"
                     /translation="MRLLSNIIRTGIISEVDEKSWRVRVRSGELETGWLRWNTSRAGA
                     FNVWLPPSPGEQVVIACIGGNPETAMIIGSLWSDAIPAPGKSLKEIVVSAPDGAVFRY
                     DADAGALSASGMKTATLQASVSVTLDTPVVECTDLLRTATLDVTKGGKMSGNITHSGG
                     NFTSNGITVHTHKHGGVKGGSDSTGGPQ"
     gene            complement(3967..4602)
                     /locus_tag="OQQ19_002758"
     CDS             complement(3967..4602)
                     /locus_tag="OQQ19_002758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000356302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HCS1804320.1"
                     /translation="MDKAFTRVDETFEAIRDSLNQQAINNIARKLAQDLRRAQQARIR
                     PQKAPDGTAWTPRRRHVTRIQERIRFIWNNEARTLKNWHHDTGKYGRTITGWDEDKNS
                     IRTFYRDDIDRFLEIRTRRINQDSTKRVPMFVKLRTARYLKARADASGVTVGYSGVAA
                     RIARVHQFGERDQVAPGIFTDYPVRELLGISQADERLIYNTVLGRIAEAVR"
     gene            complement(4595..5062)
                     /locus_tag="OQQ19_002759"
     CDS             complement(4595..5062)
                     /locus_tag="OQQ19_002759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000920596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1804321.1"
                     /translation="MLKTDSLREAMTRSCRWCQANPEKFTIFVESGNIETTGETPSFV
                     YRYQMVMFVMDYAGELDDLTLPLLAWLSENQPQLLLNPERNQDIKFSAVINDDDSADL
                     LFTLPLRERVRITRSSQGTPQAEHLLEPKPRLPSSEGDWSHVFQDVTWGESDG"
     gene            complement(5200..5607)
                     /locus_tag="OQQ19_002760"
     CDS             complement(5200..5607)
                     /locus_tag="OQQ19_002760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000780564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2570 domain-containing protein"
                     /protein_id="HCS1804322.1"
                     /translation="MKLWPTLGVAFLLTAGWGTSMRLSWSLGRENARNEAQASTLKST
                     ADTLNIISAGVQDMQQVLAQLRVENQQRNQDGEVRREQLRNDIAKDECAHALPDARFT
                     DRLRRHAERATASAVSPAYTADADHTGNASPLP"
     gene            complement(5604..5996)
                     /locus_tag="OQQ19_002761"
     CDS             complement(5604..5996)
                     /locus_tag="OQQ19_002761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000072320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HCS1804323.1"
                     /translation="MSNTFKFSSRSEKNLQGVNPDLVKVTRRALEISEVDFGITEGLR
                     SRYRQKQLVATGKSQTMNSRHLTGHAVDVVAYIGSQMSWEWPLYEKIAAAFRQASREL
                     NIPVEWGGDWKTLKDGPHFQLPHGAYPA"
     gene            complement(5993..6316)
                     /locus_tag="OQQ19_002762"
     CDS             complement(5993..6316)
                     /locus_tag="OQQ19_002762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000104349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HCS1804324.1"
                     /translation="MSTIQTGITEQVIAWLFDHLPTVYAVGAAVSISALMSLYDGRTL
                     VQTVTGSLACGVLAMAVAGSLRFFGFPEDAVTFIGASIGFMGAEKARDKVIAAFNRRV
                     KEKDE"
     gene            complement(6319..6519)
                     /locus_tag="OQQ19_002763"
     CDS             complement(6319..6519)
                     /locus_tag="OQQ19_002763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000864894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HCS1804325.1"
                     /translation="MKVKALEGDTVDSLCFRYYGTTQGVTEKVLDANPGLCQQVFLDA
                     GQEVEMPEPEKKKREMIQLWGE"
     gene            complement(6519..7013)
                     /locus_tag="OQQ19_002764"
     CDS             complement(6519..7013)
                     /locus_tag="OQQ19_002764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000063104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HCS1804326.1"
                     /translation="MTIVARTEPGPAEDDITDTDDGDTRISAGAFWPDIVLRELRLAV
                     RLPGRVTTSRLLHTATGAVAHVTRELEAWQQEQQAAGHQTLADVPAPVINGESVNLWH
                     WRNAVYTATRALILERYRDADTTDKGDRRADALDIQTSDLWRDVSWAISDILCRPRIF
                     AELC"
     gene            complement(7117..7917)
                     /locus_tag="OQQ19_002765"
     CDS             complement(7117..7917)
                     /locus_tag="OQQ19_002765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000632360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase"
                     /protein_id="HCS1804327.1"
                     /translation="MITPAQQHWQNVMAQRAGRANEGVDHAARTAHEEVLYRLRLAQA
                     RLKGVQARSAKAAIKKELLPDFSGWIEGTLEADGGQQDEVIATLMVWAIDCGDLPLAL
                     RIGAYVVRHNLIMPDNFGRTAATVLTEEICNPVLTQAGTDADADLSAFIEPLDTLREI
                     VTDQDMPDEVRAKLCKACAFARRGLSDADSMALSLKLLREAMHLNPNAGVKREIATLS
                     RALKKADSAAEPEDASAQQAQDESSKSKKTTRKPATRKTTATQKAKRG"
     gene            complement(7963..8835)
                     /locus_tag="OQQ19_002766"
     CDS             complement(7963..8835)
                     /locus_tag="OQQ19_002766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005136493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P2 family phage major capsid protein"
                     /protein_id="HCS1804328.1"
                     /translation="MIGVTDQKGEKILLDTTGPIARTNTSYDGTKRRNPNNVVDLKNR
                     KYQCEQVNYDTFISYPQLDAWSAHPDFQSRISAQIARQVALDRIMIGFNGTSHADESN
                     FSTNKLLQDVNVGWLEHIRTDASERVMNDVTLTSRNMDNTVAHAGKYANADALVQDAR
                     SSLLDEWHKEADDLVVIMGRNLFNSLRLPVLNSISGQNPNAELLAGQLILSSRTIGGL
                     GVFLAPFFPDATMLITSFNNLSIYWQKGSMRRLMKDEPEYNRIATYQSINDAYVVEDY
                     GKCAMVTGLKFADS"
     gene            complement(8832..9014)
                     /locus_tag="OQQ19_002767"
     CDS             complement(8832..9014)
                     /locus_tag="OQQ19_002767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P2 family phage major capsid protein"
                     /protein_id="HCS1804329.1"
                     /translation="MNLVMSDITRNKLGCYMAQQVSLNNIPVSALVSRFTVEPAVQQR
                     FENASKESTEFTKKIT"
     gene            complement(9038..9874)
                     /locus_tag="OQQ19_002768"
     CDS             complement(9038..9874)
                     /locus_tag="OQQ19_002768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001262634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HCS1804330.1"
                     /translation="MANEKKTSRKKFRVAVSGSTVDGREISPVHLREAAENFNPDVYA
                     ARVNVEHYLSPCPSSEFSAMGDVTALSTEEITEGPLAGRTALYAEIEPTERMKQLVAD
                     GKKIYSSIELHPQFSVNGRAYLVGLAMTDTPASLGTERLKFTAQQRQAVMTFNSIQGE
                     APLISEAIESEIIEMAEQRQEEGTQWFNRVMGIIGRGRKADDASFSRIQEAVEGVATS
                     QADIIDRFNVLETRHQQDRQKITSLTTELAALKEKLRTQDGDPQNRFTATGAASDQLA
                     DF"
     gene            10029..11780
                     /locus_tag="OQQ19_002769"
     CDS             10029..11780
                     /locus_tag="OQQ19_002769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001737206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase family protein"
                     /protein_id="HCS1804331.1"
                     /translation="MIQDAFVRQRARQLYWQGYPPAEISRLMGINPNTIYAWKKRDQW
                     DETPPGQRVTQSIDARLIQLTEKQNKTGGDFKEIDLLTRQLKKLHDGQPDVMAAGKKG
                     RAKKLKNHFTPEQIAALREKIISRLEWHQRGWFDSLTLCREAGIRNRMILKSRQIGAT
                     WYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDVELKGGDKI
                     ILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGLRRTYFS
                     TPSTETHEAYAYWNGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRTWRQIVTLEDVV
                     NHGWKHTDIDEIRDENTEDEFLNLYMCEFVREGESAFNLNILIGCGVDGYDDWKDWKP
                     FAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPSVPGGRFRTVETRRVQGLEFEEQ
                     ARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSSKRSLVLKMLQ
                     IMRAGRWEYDRAERELVAAFNAVRKVKTPGGFITYETDRARGISHGDLAWATMLAVIN
                     EPIGGEGENERFTVMEF"
     gene            11780..12826
                     /locus_tag="OQQ19_002770"
     CDS             11780..12826
                     /locus_tag="OQQ19_002770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000087802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HCS1804332.1"
                     /translation="MSRKNKKVRMSSRIDLADALRKESSLSAFTFDGPYRLTGHDLLD
                     NMYCADNGRWYETPVDWYGLARAARQTSWHQSALYFKRNVLLGCYIPHPLLSRQDFSA
                     LALDWFVFGNAFLELRSNMLGEPLKLRHALAKYMRRGSDLESWRYVQDGKDAFQFRPG
                     KVCHLMNPDINQEIYGMPEYLGALLSASLSHSADMFRKLYYDNGSHAGCIIYIGAAQV
                     NRESMDSLKETLQGARGGGAFKNVLIHAPNGGKEGVQILPFQQITAKDEFMNVKAASR
                     DDVLAAHRVPPQLMGAMPGEKSAFGDVEKAARVYAINELMPVMEAMKHINDWLGEEVI
                     RFNPYALLDIQPTS"
     gene            complement(13317..13907)
                     /locus_tag="OQQ19_002771"
     CDS             complement(13317..13907)
                     /locus_tag="OQQ19_002771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001289969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ead/Ea22-like family protein"
                     /protein_id="HCS1804333.1"
                     /translation="MSEINYQALRERYSPVPVPKCPICGEEMSIQRISGAQVVYACSG
                     YGDDGDFKIGRTLADEHYEKSRVTVLDVGDPEVLALLDWLETKDNRIAELEKIATDYA
                     LKFQKAQDALKHAALLHSRTAQQTNNFAVSLPDISEYFINDVFQPLRYERDVERAIIK
                     AGGKALWQEKHEDRTHQSCDVNCGWFSPLTTDKNNT"
     gene            complement(13971..14282)
                     /locus_tag="OQQ19_002772"
     CDS             complement(13971..14282)
                     /locus_tag="OQQ19_002772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012907691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid partitioning/stability family protein"
                     /protein_id="HCS1804334.1"
                     /translation="MTTPTRRISFYLKPTAVKNEGEACAWLDSLTPEARKSGQRVAFL
                     AGLALLKMNPAEAYRLAAWAGDEALSVTQTRTERPASQPVSTAQITSQMAGNIRALFP
                     E"
     gene            complement(14287..>14887)
                     /locus_tag="OQQ19_002773"
     CDS             complement(14287..>14887)
                     /locus_tag="OQQ19_002773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="recombinase"
                     /protein_id="HCS1804335.1"
                     /translation="KKANVMRPVEYQNGEAFTIRNVQVMPESIPAGFKALADMSPFES
                     LLIVDLGGTTLDVAKVQGQLAGISQVFCDPHVGVSLMADAVLSVMATNGMRTSHHIAN
                     TIIEHRHDEAWLRQHIHNDAHYASLMAVIREKEETLKQRVIRALAVFSGYGRVMVVGG
                     GAEIVAPAIREACGVNATFIADGVPQFALVNGLYAMDKE"
BASE COUNT         3043 a         4142 c         4070 g         3632 t
ORIGIN      
        1 ctaccaccta acgcattcgt cgaaccaact ccaagactgc cattaatgac agcattaaca
       61 agaatattta gtgcatccca tttcagcgtc atcaggtctt ttgttgtggt gctctggcgg
      121 cttctccatt tgaaatattc attgccgttg tcgcctgttt caaaccacat gtatgaatca
      181 gtgtcaccat cggcatcatt tttaaatcca atcttcgccc agtcagtatt tcgaatccag
      241 gcaaggattg agtcattttc aaaagtaagc ccaccggaca aggtatcgcc atttttttgc
      301 acggcgttac cagccctgtt taccgtttcc tgtaaaccga ggtattcgat aacggcagca
      361 acggtcgatt tcgcaagaat atcccgcccg acttttgtca gggttgccag gctggcgaca
      421 tcattccccg taaaatacgg aaacctgtct gccgcagtag caagcccggc cagcgccgtc
      481 agggtggcat ctttcggttg cttacccgca agcgcgttag tcatggtggt cgcaaaattc
      541 ggggcgtttc ccagcgccgc cgctaactcg ttcagcgtat tcagtgcgtc aggtgacgaa
      601 tctacaaggg cggcaatcgc agccataacg aaagccgtgc ttgcgatttg ggtattattc
      661 gttccctgtc gcgcagctgg cgttgttggc gttccggtca gcgcaggact gtttaagggc
      721 gctttcttgt tcgtttcatc cattaccgcc ttaaccgctt tcgatgtcgc ggccagtgtt
      781 tcagacgtgc tgttggtggc actactgagc tggactatcc ctttttgtgc cgtcgtggcg
      841 tcctgagcgg tatattttgc gttagcaagg tcatacgcgg cctttactgc tttcggcgtt
      901 gcagcctgcg tttcagacgt gctgttggtg gcgctactga gctggacaag gccttttcgc
      961 gtcgtgctgg catcctgcgc agtatattta ccgttagcaa gatcatacgc ggcctttact
     1021 gctttcggtg ttgcagcctg cgtttcagac acgctgttag tggcgctact gagttgaaca
     1081 aagccttttg cggtcagcga ggcgtccggg tgacgtcgtg actgttcatg ctctttcagt
     1141 ttgtcatcca cgtaatccac tgtggccatc accatggtgt tgtccacggt aagcgccacg
     1201 gtggcagtgc tggatacggt cagaatggtg cgaaatgttt gtgcacgacc ggacccttcg
     1261 gcaacggctg gcttgtaact ttcggcagta tttcccaccg cgattaaatc gccgtgctca
     1321 tcaaatacac caatttcccg gatccagaat ccgcccgttt caggaggaat aaccagctcc
     1381 gcaataatgc ggttctgatg tgttgcgtcc aggatgacgc gattaacagt atgtcgccac
     1441 acctcatgca ccagacgggt ctgcttactg tctggtgtgg gcaacgtgcc gccaccgtcg
     1501 cccacggcca tatgagtcag gcggacaggc ttaccatctg gcgcggctac ctgagctaat
     1561 ttttttgcac ccgtatcggt gataatggtt ttaaattttc gtgttgtggt actcatgctt
     1621 aatcgcctgg ataaatggta ataacttcac cgtcataagt tgccgccgct gcgaaaatat
     1681 cccccggaat ttcctgaatg atattcagcc ctgtcatgtg gcggctgacc gggcgggcat
     1741 cagcaatcaa ccgctccatt tccagataca tttcctccgt cacgccactg tccagcgtgc
     1801 cgacttcaac ggtaaatgtt cccggttctc cgccgaactc ccaccactca gacacgcgaa
     1861 tgaggtatcc cagcggctca atggcccggc gcagtgcgct gatggtccct ttgtgtcggt
     1921 gtatcagcca tgcatcacga ataacctgtc gctttgtctc ttccggccag ttgcgatccc
     1981 agcggtcaac ggaaaacgcc caggcgagat aaggcagcag atgcaccggg caggtgtccg
     2041 gcgaccacag cgtgttgagg tctaccggaa tgtctgtaat gcgtgttccg acggcttcgg
     2101 cacaacgcat gaaattgctg gctgatggtg gtaacaacga attactcatt gcgtccacct
     2161 tcgctgatgg tgaatgactc acagcgcgcc gcctgtatgt cgctgatggc catattctgt
     2221 gtgggttcga ttatctccac gcgttgcaca ccgtgcacat gcagtgcggc agcaatggcg
     2281 gacaacgcca cgtcctgacc gataagcccc tgctcagcca gccacttcct gaacgacgat
     2341 tcagccgcgg ccagaatagg ttcggattcc gggccggggt aaaagtacag ttttgcattc
     2401 agccgccatg tcacgattct ggcactctgt acggtcaggc ggtcggccac cgggcgggta
     2461 tcctctgcat tcagaacggc gcgaacggta ttaagcaacg cctccgttgc tgtgccgtcg
     2521 ccctcagtgg acaggatgga aaccgtcacg ttggccggag acgggctgat ggcccgcgca
     2581 tcgcgtacca gaccgctggc gctgcgtgca aaatactcgt atgcacctga cgggccagca
     2641 acactcagac cgtcatatgc ccgttgcgcc cgtagtctca gcgaggtgtc actttccatc
     2701 actgcatcgg tggtatccgt tgccggagtg ataaccaggc gctttgtgtt catattgccc
     2761 gcgaggttgt ccaggtctgt cccggcgctg tggcttagca tgcaggcgcg tgcaccctca
     2821 ttgacccgct ggcgtaacag catttcacga aacgacatgg tttgagcgat aacgttaagg
     2881 ggttccgatt ccagctccag cgcggcggaa acggcttcac gctgttcggc gggataggac
     2941 gcaatcatca tggcctttgt gtcagccaga attgcctcaa agtcaggctc cgcgatgatg
     3001 gcgggttccg gtaactgtga aaggtcaacg gcaggcatga tttactccct cagcgtgatg
     3061 gttaattcaa cattctgcat ggtctgcatg acagtgcccg acagcgtcac cccggcgcgg
     3121 cctcctgcct tccagacaac gtcgatagcg tccagggcaa tgcggggttc ccatcgtgtc
     3181 agcgcaatca cggcagcact catgcattgc agacgcgtgg tgttattcat gggttcgtca
     3241 atcaaatcag gcacaaggct gccatattcc cgtcgcataa cccggcttgc cagcggggtg
     3301 gtcaggatgt ccctgactga ctgtttcagg tgctccatat cgttcaggtt tcccgttccg
     3361 tccgggttca ttcctgtgta gcgggttgtc actgcgggcc tcctgtcgaa tcgctgccac
     3421 ctttaacgcc accgtgttta tgcgtatgca ctgtgatgcc gtttgaggtg aaattgccgc
     3481 cgctgtgcgt gatattgccg ctcatctttc ccccttttgt gacgtcaagc gtcgccgttc
     3541 tcagaaggtc tgtgcattcc acgacgggcg tatccagtgt cacgctgacg gatgcctgca
     3601 gggtggctgt tttcatgccg ctggcgctca gtgcgcctgc gtccgcgtcg tagcggaaca
     3661 ccgcgccatc cggcgcgctg accacgattt ctttcaggct tttgccgggg gccggaatgg
     3721 catcactcca caggctgcca attatcatgg cggtttccgg gttgccgcca atgcaggcaa
     3781 ttaccacctg ttcgcctggt gatggcggca gccacacatt gaaggctccc gcgcgagagg
     3841 tgttccagcg cagccaacct gtttccagtt cgccgctgcg aacgcgcacg cgccaggact
     3901 tctcatcaac ttcagagatg atcccggtgc ggatgatatt gctcagtagc cgcatgagtt
     3961 ctgcgctcac cgtacagcct ccgcaatccg gcccagcacc gtgttataaa tcagacgctc
     4021 atctgcctgg ctgataccca gcagctcacg taccgggtaa tcggtgaaaa tgcccggcgc
     4081 aacctgatcg cgctcaccga actgatgaac gcgtgcaata cgtgcggcca cgccgctgta
     4141 acccaccgtc acaccggaag catctgcacg ggctttcagg tagcgggcgg tgcgcagttt
     4201 tacgaacatg gggacgcgct ttgtgctgtc ctggttgatg cgccgggtgc gtatttccag
     4261 aaagcggtcg atgtcatccc ggtaaaacgt gcggatgctg tttttatcct catcccaccc
     4321 ggtgatggtt cgcccgtatt tccccgtgtc gtgatgccag tttttcagcg tgcgtgcttc
     4381 gttattccag ataaagcgaa tgcgctcctg tatccgggtt acgtggcgtc tgcgtggtgt
     4441 ccatgcggtc ccgtccggcg ctttctgtgg ccggatacgt gcctgctggg cgcggcgtaa
     4501 atcctgtgcc agctttctgg cgatgttatt gatggcctgc tgattcaggc tgtcgcggat
     4561 ggcctcaaag gtttcatcca cgcgagtgaa tgccttatcc atcgctttca ccccacgtca
     4621 catcctggaa tacatgcgac cagtcgcctt cggaagatgg caggcggggt tttggctcca
     4681 gcaggtgttc tgcctgcggt gtgccctgac tgctgcgcgt gatgcgaacg cgttcccgca
     4741 gggggagcgt aaacaggaga tcggcgctgt catcgtcatt gataacggcg gaaaatttga
     4801 tgtcctgatt acgctcaggg ttgagcaaca actgtggctg attttcggat aaccacgcca
     4861 gcagcggcag cgtgaggtcg tccagctccc cggcgtaatc catgacaaac atcaccatct
     4921 gatagcggta aacaaacgat ggggtttctc cggtcgtttc aatgttgccg ctctccacga
     4981 aaatggtgaa tttttccggg ttagcctgac accatcggca tgaacgggtc atggcttcac
     5041 gcagggaatc agttttcagc atggttgtta tcctcgttgt tcagtcgttg cagcctgcgc
     5101 tgttccagta attcaatggc ccgtttatcc gcgttacagg tttccagtgc atccagaagg
     5161 cggtcgcccc atataccgag atttccccat gtgggagtgt cagggaaggg gggaggcgtt
     5221 accggtatgg tcagcgtctg cggtataagc cggactgacg gcgctggcag tggcgcgttc
     5281 tgcgtgcctg cgcagcctgt cagtaaaacg agcgtcaggc aaagcgtggg cgcattcatc
     5341 ttttgcaata tcgttgcgta gctgttcacg tcttacctct ccgtcctgat tgcgttgctg
     5401 attttccacg cggagttgcg ccagcacctg ctgcatatcc tgtaccccgg cgctgatgat
     5461 attcagggtg tcggcggtac ttttcagggt gctggcctgc gcttcgtttc tggcgttctc
     5521 ccggcccagc gaccacgaca gacgcatgga tgttccccat ccggcagtca gaaggaaagc
     5581 gacgccaagc gtgggccaga gcttcatgcc ggataggctc cgtgtggtaa ctgaaaatgc
     5641 ggtccgtctt tcagggtctt ccagtcgccg ccccattcca ccggaatatt cagttcccgg
     5701 ctggcctgtc tgaatgctgc tgcgattttt tcgtacagcg gccattccca tgacatctgg
     5761 ctgccgatat aagccacaac atccacggca tgccccgtaa ggtggcggct gttcatggtc
     5821 tggctcttac ccgtggccac cagttgcttc tggcggtaac ggctgcgcaa cccttcggtg
     5881 ataccaaaat ccacttccga gatttccagt gcccgtcggg tcactttcac cagatcagga
     5941 tttacaccct gcaaattctt ttcgctccgg ctgctgaatt taaatgtgtt gctcattcgt
     6001 ccttctcctt caccctgcga ttaaaggccg caataacctt gtcgcgtgct ttctctgcac
     6061 ccataaaacc gattgatgcg ccgataaacg tcacggcatc ttcaggaaac ccgaagaagc
     6121 gcaacgaccc ggccacggcc atggcaagaa cgccgcacgc cagcgatccc gttacggtct
     6181 gaaccagtgt tcgtccgtca taaaggctca tcagcgcgga aatgctgacc gccgcgccta
     6241 ctgcatacac cgttggcagg tggtcaaaga gccacgcaat aacctgctct gtgatccctg
     6301 tttgaatggt gctcactgct actcccccca caactgaatc atttctcgtt tcttcttctc
     6361 cggctccggc atctccactt cctgcccggc gtccagaaat acctgctgac agagtccggg
     6421 gttggcatcc agcacctttt cggtgacgcc ctgcgtcgtg ccgtagtacc ggaaacagag
     6481 cgaatccacg gtgtcgcctt ccagtgcctt cactttcatc agcacaactc cgcaaagatt
     6541 cgcgggcggc acagaatgtc agagatggcc cagctcacat cacgccacaa atccgatgtc
     6601 tgtatatcca gagcgtctgc ccggcggtcg cccttgtccg tagtgtctgc atcacgataa
     6661 cgctccagaa tcagggcgcg cgtggcggta taaacagcat tgcgccagtg ccagagattg
     6721 acgctttctc cgttaattac gggtgccgga acatcggcca gcgtctgatg gccagctgcc
     6781 tgctgttcct gctgccatgc ttccagctcg cgggtaacgt gtgccacagc cccggtggca
     6841 gtatgcagca ggcgggaggt ggtcacgcgc cccggcagtc gtaccgccag acgcagctcg
     6901 cgcagcacaa tatccggcca gaatgcaccc gctgaaatgc gggtatcgcc atcatcggta
     6961 tcggtgatgt cgtcctctgc gggtccgggt tcagttctgg caactatagt catggggttc
     7021 actcctgaaa aaaaatcggg cggtgggtgc gcggtgtaaa cggtcacgga gtcaaactgg
     7081 aacaccgcgc acgccgcccg ctgacggggt cagtcgttaa ccgcgcttcg ccttctgcgt
     7141 cgcggtggtt tttcgtgttg caggcttccg cgttgtcttt ttacttttgc tgctttcgtc
     7201 ctgcgcctgc tgtgcgctgg cgtcttctgg ttcggctgcg gaatcggctt ttttcagggc
     7261 gcgggaaagg gttgcaatct cgcgtttcac acctgcgttc gggttcaggt gcattgcttc
     7321 gcgcagcagc ttcagtgaca gggccatgct gtccgcatca ctcaggccac ggcgggcaaa
     7381 ggcgcacgct ttgcataatt tggcgcgcac ttcgtccggc atgtcctggt cggtgacaat
     7441 ctcccggagg gtgtccagtg gttcgataaa ggcggacaaa tccgcgtcgg catccgtccc
     7501 ggcctgcgtc agtaccggat tacagatttc ttcggtcagt accgtggcag cagtacggcc
     7561 aaagttatcc ggcatgatga ggttgtgacg gactacatac gcgccgatac gcagcgcaag
     7621 cggaagatcg ccacagtcaa tcgcccacac catcagcgtg gcaatcactt catcctgctg
     7681 cccgccgtca gcctccagcg ttccctcaat ccagccggaa aaatccggca acaactcttt
     7741 tttgatggcg gctttcgcgc ttctggcctg tacgccctta agccgggcct gtgccagacg
     7801 cagacgatac agcacctctt catgcgcggt acgcgcggcg tggtccacgc cttcattcgc
     7861 ccggcctgcg cgctgtgcca tcacgttctg ccagtgttgt tgtgcaggag taatcatttt
     7921 tgctctccgt tacaggcggg catgatgccc gccgtgagtt gattagctgt cggcgaactt
     7981 caggccagta accatcgcgc acttgccata gtcttcaacg acataagcgt cattgatgga
     8041 ctggtaggtg gcgatgcggt tgtattccgg ctcgtctttc atcaggcgac gcattgaacc
     8101 tttctgccag taaatcgaca ggttgttgaa cgaggtgatc agcatcgttg catccgggaa
     8161 gaacggcgca aggaacacgc ccagcccgcc aatggtgcgc gatgacagga tgagctgccc
     8221 ggcgagtaat tccgcattgg gattctggcc gctgatgctg ttcagcacgg gcagacgcag
     8281 cgagttaaac aggttgcgcc ccataatcac cacgaggtcg tcagcttcct tgtgccattc
     8341 atccagcagg gatgaacgcg cgtcctgtac cagtgcatca gcgttcgcat acttacccgc
     8401 gtgcgccacg gtgttgtcca tgttgcggga ggtcagcgtc acgtcattca taacgcgttc
     8461 gctggcgtcg gttctgatgt gctccagcca gcccacgtta acgtcctgaa gcagcttgtt
     8521 ggtgctgaag ttggactcat ccgcgtgaga cgtgccgttg aaaccgatca tgatgcggtc
     8581 aagcgccacc tgtcgggcaa tctgtgcgct gatgcgggac tgaaaatcag ggtgtgccga
     8641 ccaggcatca agctgcggat acgaaataaa cgtgtcgtag ttcacctgtt cacactgata
     8701 tttgcggttt ttcagatcaa ccacgttatt cgggttacgg cgttttgtgc cgtcataact
     8761 ggtattcgtg cgcgcaatcg gtcctgtggt atccaggagg attttttcgc ctttctggtc
     8821 ggtcacgccg atcacgttat ttttttcgta aattcggtac tttcctttga ggcgttttca
     8881 aaacgctgct gcaccgcggg ttccacggta aatcgcgaca ccagtgcaga taccgggata
     8941 ttattaagcg acacctgctg cgccatatag caacccagct tgttgcgggt aatatctgac
     9001 atcaccagat tcataaaaaa tttgctcctt tgtctaatca gaagtcggcc agctggtcgg
     9061 aggctgcgcc cgttgcggtg aagcggttct gcggatcgcc gtcctgcgtg cgcagttttt
     9121 ccttcagtgc tgccagctct gtggtcagtg acgtaatttt ctggcggtcc tgctgatggc
     9181 gggtttccag cacattaaaa cggtcgataa tgtcggcctg tgacgttgcg acgccttcca
     9241 ccgcttcctg aatacgggaa aaactggcgt catccgcttt gcggccacgg ccaataatcc
     9301 ccattacgcg gttaaaccac tgggtgcctt cttcctggcg ttgttctgcc atttcgatga
     9361 tttcagactc gatggcttcg gagataagcg gcgcttcacc ctggatactg ttaaacgtca
     9421 tcaccgcctg acgttgctgt gccgtgaatt tcaggcgctc agtgcccagg cttgccgggg
     9481 tgtcggtcat cgccagcccg accagatagg cgcgcccgtt aacggagaac tgcgggtgca
     9541 gttcgatact ggaatagatt ttcttgccgt ccgcaacaag ctgcttcatg cgctcggtcg
     9601 gttcgatttc tgcatacagc gcagtacgtc cggccagcgg accttccgta atctcttccg
     9661 tactcagtgc ggtgacatcg cccattgcgg aaaattcgct tgacgggcat ggcgagagat
     9721 agtgctcaac gttcacgcgg gcagcgtaaa catccgggtt gaagttctcg gcggcttcac
     9781 gcagatgcac cggactgatt tcacggccat caacagttga tccggagaca gccacgcgaa
     9841 actttttgcg ggatgtcttt ttttcattag ccatagtttt tgcccctctg actggttctt
     9901 cagtcatgat ggcaaagcgt aacaggctga tacaaagggc ttttgttgta agaaaacggc
     9961 cagaacagag ggttaaggag aacagtttcg cgcgcgggta atcttcctgt aattactcag
    10021 ggggagcaat gattcaggac gcttttgtgc gccagcgtgc gcggcaactt tactggcagg
    10081 gttatccgcc cgcagaaata tcacgtctga tgggaataaa cccgaacacg atttatgcgt
    10141 ggaaaaaacg tgaccagtgg gatgaaacgc cacccgggca gcgtgtcacg cagtccatcg
    10201 atgcgcgcct catccagctt actgaaaaac agaataaaac aggcggtgac tttaaggaaa
    10261 tagacctgct gacccggcag cttaaaaagc tgcatgatgg ccagccggat gtgatggccg
    10321 caggaaagaa aggccgggcg aaaaaactca aaaatcattt cacgccggaa cagattgccg
    10381 cactgcggga aaaaatcatc agcaggctgg agtggcatca gcggggctgg tttgactccc
    10441 tgaccctttg cagggaagcc gggatacgta acaggatgat cctgaaatcc cgacagattg
    10501 gggcgacctg gtattttgca caggaagcac tgctgatggc gctgcgtgac gatgtggcgc
    10561 aaccttacca gcgtaaccag atttttttgt ctgcgtcgcg tcgtcaggcg ttccagttta
    10621 aaagcattat tcagaaggcc gcggctgaag ttgatgtgga gctgaaaggg ggcgataaaa
    10681 tcatcctctc caacggcgca gagctgcatt ttctcggcac ttctgctgcg tcggcacagt
    10741 cctatacggg caatttttat tttgatgaat ttttctgggt cagtcgcttt gctgaactgc
    10801 gcaaggtggc tggcgctatg gcaaccctca gcggactgcg gcgcacctac ttctccacgc
    10861 catccaccga aacgcacgag gcatacgcct actggaacgg cgaccgctgg aacgagaaaa
    10921 aggcctcgca taaacgccag cgtttttctg tggactggaa aacgctgcat aacgggctta
    10981 tctgccctga ccggacgtgg cggcaaattg tcacgctgga agatgtggtt aatcacggct
    11041 ggaaacacac cgatatcgac gaaattcgtg atgaaaacac cgaagacgag ttcctcaatc
    11101 tctatatgtg tgagtttgtc cgcgaagggg aatcggcatt taacctgaat atcctgattg
    11161 gctgcggcgt tgacggatac gacgactgga aagactggaa accttttgct ccccgcccga
    11221 tggggaatcg tccggtatgg attgggtatg acgcaaacgg cagcagtggc aacggcgaca
    11281 gcggcgctgt gtccgtggtg gttcctccgt ctgttcctgg tggccgtttt cgaacggtgg
    11341 agacgcgacg cgttcagggg ctggagtttg aagaacaggc cagagtcatt gaagagttca
    11401 cgtgtcgcta caacgtggaa cacatcggca ttgatgtgac gggcgggaac ggggaggctg
    11461 tttatcagat agtgaaacgg tttttccctg ccgctattcc gtacaccttc acgctgtcat
    11521 caaaacggtc gctggtactg aaaatgctgc aaataatgcg tgccgggcgg tgggaatacg
    11581 atcgcgccga acgcgagctg gtcgcggcct ttaacgccgt gcgtaaggtg aaaacaccgg
    11641 gcggctttat cacttacgaa acggaccgag cgagggggat cagccacggc gaccttgcgt
    11701 gggcaaccat gcttgctgtc attaacgaac cgattggcgg cgaaggagaa aacgagcgtt
    11761 tcacggttat ggagttctga tgagcagaaa aaataaaaaa gtgcgcatga gttcacgcat
    11821 tgatctcgct gatgcgctca ggaaagaatc atcgctcagt gcattcacat ttgatggtcc
    11881 ttatcgcctg accgggcatg acctgctgga caatatgtac tgtgctgata acgggcggtg
    11941 gtatgaaacc ccggtggact ggtacggtct ggcaagagct gcccggcaaa cgtcctggca
    12001 tcagtctgcg ctttatttta agcgcaatgt attgctcggt tgctacatcc cgcacccgct
    12061 gctttcccgg caggatttct cggcgctggc gctggactgg tttgtgttcg gtaacgcatt
    12121 ccttgagctt cgaagcaata tgctcggcga accgcttaaa ttacggcacg ccctggcgaa
    12181 atacatgcga cgcggaagcg atcttgaatc atggaggtat gtgcaggatg gcaaggatgc
    12241 gtttcagttt cgcccaggca aagtgtgtca cctgatgaat cctgacatta accaggaaat
    12301 ctacggcatg ccggaatatc tcggcgcatt actctcggcc agcctgtctc attcggcgga
    12361 catgttcaga aaactgtatt acgacaacgg atcccacgcc gggtgcatca tctacatcgg
    12421 tgccgcgcag gtaaaccgcg aaagcatgga ctccctgaaa gaaacgctac agggtgcgcg
    12481 tggtggtggt gcgtttaaaa acgtgctcat tcatgcgccc aacgggggca aagagggggt
    12541 gcaaattttg ccgttccagc agatcaccgc aaaggatgag ttcatgaatg ttaaggcggc
    12601 atcccgtgat gatgtgctgg ctgcgcaccg cgttccgccg caactgatgg gggcgatgcc
    12661 gggtgaaaaa agtgcgtttg gtgatgtgga gaaggccgcg cgggtttacg caattaacga
    12721 gctgatgccc gtcatggagg ccatgaagca catcaatgac tggcttggcg aagaggtgat
    12781 ccgctttaac ccttacgcac tgttagacat ccagcccaca tcctgacgcg cttcgcttgt
    12841 ctgctgcttc gccggggcat aaaaaattta tgccccgact ctccagctcc tgtatcagtc
    12901 agataatttc acgacgcctt ccagtttatc gccaccatcg acggtcagac tcttacgcaa
    12961 tcccaccgcg ttgactgcat gttctcgccg cctcagtgcg attttgacgg ccttaccttt
    13021 caccccatca aatcagaatc cctcacgtat ttttcacgct cagcgtgaga aatacggcca
    13081 ttctgtcgtg tcgctgcgac atcgttaagg gaacgctatt taccccctga aacgcgggct
    13141 gttcccccgt cacctgcgcg cagaaaaagc gcgttttttt gtgcacgcac ggatccttga
    13201 cggatccagc cgccacgcgg gctggaaggg caaaaattcg ttcaaaaaaa ttgtgcaaat
    13261 ttgtgcacta ttgtgcagca gggcgatgtg cgattatcgc cctggtttga gggggatcag
    13321 gtgttatttt tatctgtcgt cagtgggcta aaccatccac aatttacatc gcatgactga
    13381 tgcgttctgt cctcgtgttt ctcctgccac aatgcttttc cgccagcctt tatgatggct
    13441 ctttcaacat cccgctcgta tcgcaagggc tgaaatacgt cattaatgaa atattcgctt
    13501 atgtccggaa gcgatactgc aaaattattt gtttgttgcg ccgtcctgct atgcagcaaa
    13561 gcggcatgct ttaatgcgtc ctgtgctttc tggaatttaa gtgcatagtc agtggcgatt
    13621 ttttccagtt cagcgattcg gttgtctttg gtttccagcc aatcaagtag cgccaatact
    13681 tcaggatccc cgacatccaa cactgttacg cgtgattttt cataatgttc gtcagcaaga
    13741 gttcggccaa ttttgaaatc tccatcatca ccataaccgg agcaggcata aacaacctgt
    13801 gctccagata ttcgctgaat tgacatttcc tcgccgcaaa tagggcattt cggtactggc
    13861 acaggtgaat aacgttcacg taatgcctga tagttgattt cgctcattaa gtcgttctcc
    13921 ttgtttatgt tctgaggtgg agagcagggc gaactcgccc tgatgttgtg ttattcagga
    13981 aataacgccc ggatatttcc ggccatctga ctggttatct gtgcggttga tactggctgt
    14041 gatgcggggc gttctgtcct ggtttgtgtc actgataacg cttcatcacc agcccatgca
    14101 gccagtcgat aagcctctgc cggattcatt ttcagaagtg ccagcccggc cagaaaagcc
    14161 acgcgttggc cgcttttgcg ggcttctggt gtaaggctgt ccagccaggc gcatgcttct
    14221 ccttcgttct tgacggcggt gggcttcaga tagaaactta tccgtctggt tggagtcgtc
    14281 attggtttac tccttgtcca ttgcgtacag cccattaacc agagcaaact gtggcacccc
    14341 gtccgcgatg aaagtcgcat taactccgca ggcttcgcgg atagcgggtg ccacaatctc
    14401 cgcccctcca ccgacaacca tcacccgccc gtaacccgaa aaaaccgcca gcgcgcggat
    14461 cacgcgttgt ttcagtgttt cttccttttc acgaattacc gccatcaggc tggcgtaatg
    14521 cgcgtcattg tggatgtgct ggcgcagcca ggcttcatca tggcgatgtt cgataatggt
    14581 attggcgatg tggtgactgg tgcgcatacc gttagtggcc atcaccgaca gtacggcatc
    14641 ggccatcaga gaaacgccca cgtgtggatc gcaaaacacc tggctgatac ctgccagttg
    14701 cccctgaacc tttgccacat ccagcgtggt tccgcccaaa tccacaatca gcagggattc
    14761 aaacggactc atgtcagcca gtgccttaaa gccagccgga atggattcag gcataacctg
    14821 tacgttacgg atagtgaatg cttcgccgtt ctggtactcc accgggcgca tgacgttcgc
    14881 ttttttg
//
LOCUS       DAJVSY010000102        14558 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.102, whole genome shotgun sequence.
ACCESSION   DAJVSY010000102 DAJVSY010000000
VERSION     DAJVSY010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14558)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14558)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14558
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.102"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..209)
                     /gene="tuf"
                     /locus_tag="OQQ19_002774"
     CDS             complement(<1..209)
                     /gene="tuf"
                     /locus_tag="OQQ19_002774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="EF-Tu; promotes GTP-dependent binding of
                     aminoacyl-tRNA to the A-site of ribosomes during protein
                     biosynthesis; when the tRNA anticodon matches the mRNA
                     codon, GTP hydrolysis results; the inactive EF-Tu-GDP
                     leaves the ribosome and release of GDP is promoted by
                     elongation factor Ts; many prokaryotes have two copies of
                     the gene encoding EF-Tu; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HCS1804336.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA
                     RAFDQIDNAPEEKARGITINTSHVE"
     gene            complement(280..2394)
                     /gene="fusA"
                     /locus_tag="OQQ19_002775"
     CDS             complement(280..2394)
                     /gene="fusA"
                     /locus_tag="OQQ19_002775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020455498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HCS1804337.1"
                     /translation="MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH
                     DGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKT
                     RLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEW
                     HQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQ
                     AMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLT
                     FFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVT
                     TGDTLCDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTD
                     EESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQ
                     SGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPL
                     AGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETP
                     EENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTM
                     EFLKYDEAPSNVAQAVIEARGK"
     gene            complement(2491..2961)
                     /gene="rpsG"
                     /locus_tag="OQQ19_002776"
     CDS             complement(2491..2961)
                     /gene="rpsG"
                     /locus_tag="OQQ19_002776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015873274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HCS1804338.1"
                     /translation="MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVY
                     SALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMR
                     WIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW"
     gene            complement(3058..3432)
                     /gene="rpsL"
                     /locus_tag="OQQ19_002777"
     CDS             complement(3058..3432)
                     /gene="rpsL"
                     /locus_tag="OQQ19_002777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005306278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HCS1804339.1"
                     /translation="MATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGAL
                     DCSGVKDRKQARSKYGVKRPKA"
     gene            complement(3558..3845)
                     /gene="tusB"
                     /locus_tag="OQQ19_002778"
     CDS             complement(3558..3845)
                     /gene="tusB"
                     /locus_tag="OQQ19_002778"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusB"
                     /protein_id="HCS1804340.1"
                     /translation="MLHTLHRSPWLTDFAALLRLLSEGDELLLLQDGVTAAVDGNRYL
                     ESLRNAPIKVYALNEDLIARGLTGQISNDIIPIDYTDFVRLTVKHSSQMAW"
     gene            complement(3853..4212)
                     /gene="tusC"
                     /locus_tag="OQQ19_002779"
     CDS             complement(3853..4212)
                     /gene="tusC"
                     /locus_tag="OQQ19_002779"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusC"
                     /protein_id="HCS1804341.1"
                     /translation="MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGV
                     FQLLSGQKPDAVLARDYIATFKLLGLYDIEQCWVCAASLRERGLDPQTPFVVEATPLE
                     ADALRRELANYDVILRF"
     gene            complement(4212..4598)
                     /gene="tusD"
                     /locus_tag="OQQ19_002780"
     CDS             complement(4212..4598)
                     /gene="tusD"
                     /locus_tag="OQQ19_002780"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusD"
                     /protein_id="HCS1804342.1"
                     /translation="MRFAIVVTGPAYGTQQASSAFQFAQALIVEGHELSSVFFYRGGV
                     YNANQLTSPASDEFDLVRGWQQLNAQHGVALNICVAAALRRGIVDETEAGRLGLASSN
                     LQPGFTLSGLGALAEASLTCDRVVQF"
     gene            complement(4598..5320)
                     /locus_tag="OQQ19_002781"
     CDS             complement(4598..5320)
                     /locus_tag="OQQ19_002781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709120.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1804343.1"
                     /translation="MSRSLLTNETSELDLLDQRPFDQTDFDILKSYEAVVDGLAMLIG
                     SHCEIVLHSLQDLKCSAIRIANGEHTGRKIGSPITDLALRMLHDMTGADSSVSKCYFT
                     RAKSGVLMKSLTIAIRNREQRVIGLLCINMNLDVPFSQIMSTFVPPETPDVGSSVNFA
                     SSVEDLVTQTLEFTIEEVNADRNVSNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNI
                     SKHTVYLYIRQFKSGDFQGQDK"
     gene            complement(5487..6299)
                     /gene="fkpA"
                     /locus_tag="OQQ19_002782"
     CDS             complement(5487..6299)
                     /gene="fkpA"
                     /locus_tag="OQQ19_002782"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HCS1804344.1"
                     /translation="MKSLFKVTLLATTMAVALHAPITFAAEAAKPATTADSKAAFKND
                     DQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTL
                     QAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEA
                     PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV
                     IPPELAYGKAGVPGIPPNSTLVFDVELLDVKPAPKADAKPEADAKAADSAKK"
     gene            6520..6738
                     /locus_tag="OQQ19_002783"
     CDS             6520..6738
                     /locus_tag="OQQ19_002783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein SlyX"
                     /protein_id="HCS1804345.1"
                     /translation="MQDLSLEARLAELESRLAFQESTIEELNVTVTAHEMEMAKLRDH
                     LRLLTEKLKASQPSNIASQAEETPPPHY"
     gene            complement(6787..7377)
                     /gene="slyD"
                     /locus_tag="OQQ19_002784"
     CDS             complement(6787..7377)
                     /gene="slyD"
                     /locus_tag="OQQ19_002784"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCS1804346.1"
                     /translation="MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISG
                     LETALEGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQ
                     GPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHH
                     DHDHDGCCGGHGHDHGHEHGGEGCCGGKGNGGCGCH"
     gene            complement(7472..7672)
                     /locus_tag="OQQ19_002785"
     CDS             complement(7472..7672)
                     /locus_tag="OQQ19_002785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheV family putative metal-binding protein"
                     /protein_id="HCS1804347.1"
                     /translation="MAIRKRFIAGAKCPACQAQDSMAMWRENNIDIVECVKCGHQMRE
                     ADKEARDHVRKDEQVIGIFHPD"
     gene            complement(7682..9493)
                     /gene="kefB"
                     /locus_tag="OQQ19_002786"
     CDS             complement(7682..9493)
                     /gene="kefB"
                     /locus_tag="OQQ19_002786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     protein KefB"
                     /protein_id="HCS1804348.1"
                     /translation="MEGSDFLLAGVLFLFAAVAAVPLASRLGIGAVLGYLLAGIAIGP
                     WGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAALL
                     AGLLMLTDFAWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAV
                     IPALALVPLLAGSADEHFDWMKIGMKVLAFVGMLIGGRYLLRPVFRFIAASGVREVFT
                     AATLLLVLGSALFMDALGLSMALGTFIAGVLLAESEYRHELETAIDPFKGLLLGLFFI
                     SVGMSLNLGVLYTHLLWVVISVVVLVAVKILVLYLLARLYGVRSSERMQFAGVLSQGG
                     EFAFVLFSTASSQRLFQGDQMALLLVTVTVTLSMMTTPLLMKLVDKWLSRQFNGPEEE
                     DEKPWVNDDKPQVIVVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYY
                     GDATQVDLLRSAGAEAAESIVITCNEPEDTMKLVEICQQHFPHLHILARARGRVEAHE
                     LLQAGVTQFSRETFSSALELGRKTLVTLGMHPHQAQRAQLHFRRLDMRMLRELIPMHA
                     DTVQISRAREARRELEEIFQREMQQERRQLDGWDEFE"
     gene            complement(9493..10044)
                     /gene="kefG"
                     /locus_tag="OQQ19_002787"
     CDS             complement(9493..10044)
                     /gene="kefG"
                     /locus_tag="OQQ19_002787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709126.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     ancillary protein KefG"
                     /protein_id="HCS1804349.1"
                     /translation="MSQPAKVLLLYAHPESQDSVANRVLLKPATQLSNVTVHDLYAHY
                     PDFFIDIPREQALLREHEVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNQLAG
                     KYWRNVITTGEPESAYRYDALNRYPMSDVLRPFELAAGMCRMHWLSPIIIYWARRQSA
                     KELANHARAYGDWLANPLSPGGR"
     gene            10170..12083
                     /locus_tag="OQQ19_002788"
     CDS             10170..12083
                     /locus_tag="OQQ19_002788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1804350.1"
                     /translation="MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLL
                     ALLKNEISADGGSYTFPGSWQLAWVNQETPALSQAALEYVIDGDREYRQLEAQLHDAN
                     ERNDGHAIATIHGKLDAIDAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL
                     AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIH
                     IEQQSMFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQA
                     QSRIKMLERMELIAPAHVDNPFRFSFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLN
                     LVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEYLRADE
                     SPIQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPN
                     LLLLDEPTNHLDLDMRQALTEALIEFEGALVVVSHDRHLLRSTTDDLYLVHDRKVEPF
                     DGDLEDYQQWLSDVQKQENQTDEAPKENANSAQARKDQKRREAELRAQTQPLRKEIAR
                     LEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ
                     EQLEQMLLEGQSN"
     gene            12083..13105
                     /locus_tag="OQQ19_002789"
     CDS             12083..13105
                     /locus_tag="OQQ19_002789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HCS1804351.1"
                     /translation="MAQITTTDANEFSSSAEFTPMRGFSNCHLQTMLPRLFRRQVKFT
                     PYWQRLELPDGDFVDLAWSEAPAQARHKPRLVIFHGLEGSLNSPYAHGLVEAAQKRGW
                     LGVVMHFRGCSGEPNRMHRIYHSGETEDASWFLRWLQREFGHAPTAAVGYSLGGNMLA
                     CLLAKEGNDLPVDAAVIVSAPFMLEACSYHMEKGFSRVYQRYLLNLLKANAARKLAAY
                     PGTLPINLAQLKSVRRIREFDDLITARIHGYADAIDYYRQCSAMPMLNRIAKPTLIIH
                     AKDDPFMDHQVIPKPESLPSQVEYQLTEHGGHVGFIGGTLLHPQMWLESRIPDWLTTY
                     LEAKSC"
     gene            13099..13317
                     /locus_tag="OQQ19_002790"
     CDS             13099..13317
                     /locus_tag="OQQ19_002790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheU family protein"
                     /protein_id="HCS1804352.1"
                     /translation="MLIPWQDLSPETLENLIESFVLREGTDYGEHERTLEQKVADVKR
                     QLQCGEAVLVWSELHETVNIMPRSQFRE"
     gene            13371..14240
                     /locus_tag="OQQ19_002791"
     CDS             13371..14240
                     /locus_tag="OQQ19_002791"
                     /EC_number="2.7.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribulokinase"
                     /protein_id="HCS1804353.1"
                     /translation="MSAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAEVEGDSF
                     HRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFIEYGQSGKGKSRKYLHTYD
                     EAVPWNQVPGTFTPWQPLPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLE
                     WIQKLIRDTSERGHSREAVMDSVVRSMEDYINYITPQFSRTHLNFQRVPTVDTSNPFA
                     AKGIPSLDESFVVIHFRNLEGIDFPWLLAMLQGSFISHINTLVVPGGKMGLAMELIML
                     PLVQRLMEGKKIE"
     gene            complement(14295..>14558)
                     /locus_tag="OQQ19_002792"
     CDS             complement(14295..>14558)
                     /locus_tag="OQQ19_002792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HCS1804354.1"
                     /translation="SAIDVVSILQKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIV
                     TGRDLKDAAVARAVDLSAEKYCSVALMLEKAVNITHSYEVVAA"
BASE COUNT         3598 a         3970 c         3586 g         3404 t
ORIGIN      
        1 tattcaacgt gagaagtgtt gatggtgata ccacgagctt tttcttccgg cgcgttatcg
       61 atctggtcga atgcacgagc agcaccgccg taggttttag ccagtacggt ggtgattgca
      121 gcggtcagag tagttttacc gtggtcaacg tggccgatag taccaacgtt aacgtgcggt
      181 tttgtacgtt caaatttttc tttagacacg gctatattcc ttactatagt gctctcccct
      241 tcaggagaga gcacgggact ttggtattaa cccttaggct tatttaccac gggcttcaat
      301 tacggcctga gcaacgttac tcggcgcttc atcatacttc aggaattcca tagtgtatga
      361 tgcacgacct ttggtcagag aacgcagctg agttgcgtat ccgaacattt cagacagcgg
      421 tacttcagcg tggatcttaa cgccagtaac ttcagattcc tgacctttga gcataccacg
      481 acgacggctc aagtcaccga taacgtcacc ggtgttctct tccggagttt ctacttcaac
      541 cttcatgatc ggctcaagca gaactggttt cgctttctta aagccttctt taaaggcgat
      601 agaagcagcc agtttaaacg ccagttcaga ggagtcaacg tcatggtaag aaccgaagtg
      661 cagacgaata cccatgtcta ctaccgggta gcctgccagc ggacctgctt tcagctgttc
      721 ctggatacct ttatcaacgg ccgggatgta ttcgccaggg attacaccac ctttaatgtc
      781 gttgatgaac tcgtagcctt tcgggtttga acccggctcc agcgggtaca tgtcgataac
      841 aacatgacca tactgaccac gaccaccaga ctgtttcgcg tgtttacctt caacatcggt
      901 aactttctgg cggatagttt cacggtaagc aacctgcggt ttacctacgt tcgcttcaac
      961 gttgaattca cgcttcatac ggtcaacgat gatgtcgagg tgcagttcgc ccatacccgc
     1021 gatgattgtc tggttagatt cttcgtcagt ccatacacgg aaagacgggt cttctttagc
     1081 cagacggccc agagccagac ccattttttc ctggtcagct ttggttttcg gttcaactgc
     1141 gatggagatt accggctcag ggaattccat acgttccaga atgatcggcg catccgggtc
     1201 acacagggtg tcaccagtgg ttacgtcttt cagaccgata gcagcagcga tgtcgcccgc
     1261 gcgaacttct ttgatctctt cacgtttgtt agcgtgcatc tgaacgatac gaccgaaacg
     1321 ctcacgtgca gctttcacgg agttcagtac ggtatcacca gagttaacca caccggagta
     1381 aacacggaag aaggtcaggt taccaacaaa cgggtcggta gcgattttga acgccagtgc
     1441 agagaacggc tcgtcatcac ttgcgtgacg ttcagccgga gtgtctttac cgtcgtccag
     1501 gataccgttg atcgcaggta cgtcaaccgg ggatggcagg taatcaatta ccgcatccag
     1561 catcgcctga acacctttgt tcttgaacgc agaaccacag gttaccagga tgatttcgtt
     1621 gttcagaacg cgctgacgca gagcaccttt gatttctgct tcagtcagtt cttcaccacc
     1681 caggtatttt tccatcagct cttcagaagc ttcagctgcg gattcgatca ggttctggtg
     1741 ccattcgtta gccagttcaa ccatgtctgc cgggatatct tcgtattcga aggttacgcc
     1801 ctggtcagcg tcgttccagt taatagcttt cattttcacc aggtcaacaa caccggtgaa
     1861 atgttcttca gcaccaatcg ccagctgcag cggaaccgga ttcgcgccca gacgggtttt
     1921 gatctggtta acaactttca ggaagttcgc acccatgcgg tccattttgt taacgaacgc
     1981 aatgcgcgga actttatatt tgtttgcctg acgccatacg gtttcagact gcggctgaac
     2041 accaccaact gcgcagtaaa ccattaccgc accatcgaga acacgcatgg aacgttctac
     2101 ttcgattgtg aagtcaacgt gccccggggt gtcgatgatg ttgatgcgat gcggctcata
     2161 ctgcttagcc ataccagacc agaatgcagt agtcgcagcg gaagtgatgg taataccacg
     2221 ttcctgctcc tgctccatcc agtccatggt tgcagcgccg tcatgaactt cacctatttt
     2281 atggtttaca ccggtgtaga acagaatacg ttcggtagta gtggttttac cggcgtcgat
     2341 gtgcgcactg ataccgatgt tacggtagcg tgcgatgggt gttgtacgag ccatttgttt
     2401 cctcgtttat cttttaggcg ttcaatttaa gtagcccaaa gcgggctgct tactggaagc
     2461 gcccgcctgg tgactaaaac tccgaaggga ttaccaacgg tagtgtgcga acgccttgtt
     2521 ggcttcggcc atacggtgaa cgtcttcacg tttcttaact gcagtacctt tgttttctgc
     2581 agcatcagaa agttcgttcg ccaggcgcag agccatggat ttatcaccgc gtttacgagc
     2641 agcttcaacg atccaacgca ttgccagagc attacgacga accggacgga cttcaactgg
     2701 tacctgataa gtagaaccac caacgcggcg agacttaact tctacagtcg ggcgcacgtt
     2761 ttcgagagct acttcgaatg cttccagttc agatttacca gagcgctgag ccagggtctc
     2821 cagcgcgctg tatacgatag attcagcagt agatttttta ccatctacca tcaggatatt
     2881 tacaaattta gccagcagtt ctgatccgaa cttcggatcc ggcagaattt tacgctgacc
     2941 aatgacgcga cgacgtggca tggaaatact ccgttgttaa ttcaggattg tccaaaactc
     3001 tacgagttta gtttgacatt taagttaaaa cgtttggcct tacttaacgg agaaccatta
     3061 agccttagga cgcttcacgc catacttgga acgagcctgc ttacggtctt taacgccgga
     3121 gcagtcaagc gcaccacgta cggtgtggta acgaacaccc gggaggtctt taacacgacc
     3181 gccacggatc aggatcacgg agtgctcctg caggttgtga ccttcaccac cgatgtagga
     3241 agtcacttcg aaaccgttag tcagacgaac acggcatact ttacgcagcg cggagttcgg
     3301 ttttttagga gtggtagtat atacacgagt acatacgcca cgtttttgcg ggcatgcttc
     3361 cagcgcaggc acgttgcttt tcgcaacttt gcgagcacgt ggtttgcgta ccagctggtt
     3421 aactgttgcc attaaatagc tcctggtttt agcttttgct tcgtaaacac gtaataaaac
     3481 gtcctcacac aatatgagga cgccgaattt tagggcgatg ccgaaaaggt gtcaagaaat
     3541 atacaacgat cccgccatca ccaggccatc tggctggagt gcttaaccgt aagtctgacg
     3601 aaatcagtat agtcaatggg aatgatgtcg ttcgaaattt gaccagtcaa accgcgggca
     3661 ataaggtctt cgttcagggc atagacctta atgggggcat tacgcagact ttcaaggtag
     3721 cggttaccgt caactgcggc agttacgcca tcttgcaata atagcagttc gtctccttca
     3781 ctgagcagac gcagcagcgc agcaaaatcc gtcagccagg gtgaacgatg taacgtgtgc
     3841 agcataaacg cctcaaaacc tcaaaataac atcgtagttg gcgagttcgc ggcgtaaggc
     3901 atctgcttcg agcggcgtgg cttcgacaac aaagggtgtc tgcggatcta acccgcgttc
     3961 gcgcagtgaa gccgcacaaa cccagcactg ttcaatgtcg tacagaccca acaatttaaa
     4021 agtggcaatg taatcacgcg ccagcactgc atcgggcttt tgtcctgaca gcagctgaaa
     4081 aacgccatca gcaataaaga agacggccag atcgtcagtt aatgcggaag ttgccagtaa
     4141 agcatctaaa ccttcccgac cagcagctgt accatgaggt gcagtagaaa aaacaaacgc
     4201 aattcgtttc atcagaactg taccaccctg tcacaggtca gcgaggcttc cgccagcgcg
     4261 ccaagtccgc ttaaggtaaa tcccggctga aggtttgacg aagccagccc cagccttcct
     4321 gcttcagttt catcgacgat accgcggcgt aacgctgccg ctacgcagat attcagcgcc
     4381 acaccatgtt gcgcattcaa ctgttgccag ccgcgcacaa ggtcaaattc gtcacttgcc
     4441 ggtgaggtca attggttagc gttatagacc cctccccgat agaaaaagac gctgcttaac
     4501 tcatggcctt ctactatcag cgcctgcgca aactgaaaag cactactcgc ctgttgcgta
     4561 ccgtatgctg gcccggtcac cacgatggca aaacgcatta cttatcttgc ccctggaaat
     4621 caccgctctt gaactggcgg atgtagagat agacagtgtg tttggagatg ttcaggcggt
     4681 cagcaacctg gttgatcgca tctttaatat cgaagatccc tttctcgtag agattcagca
     4741 cgatctgacg atttttggcg ttattagaaa cattgcgatc ggcattcact tcttcgatgg
     4801 tgaactccag cgtttgggta accagatctt caacagaaga ggcaaagttg acgcttgaac
     4861 cgacatccgg ggtttctggc ggcacaaaag tgctcataat ctgcgagaag ggaacatcaa
     4921 gattcatatt gatgcacagc agaccaatta cacgctgttc gcggttacga atcgcgatag
     4981 tcagggactt cattaatacg ccgcttttgg cgcgagtaaa gtagcattta gaaacgctgc
     5041 tatccgctcc cgtcatatcg tgcagcatac gtagcgccag gtcagtaatt ggcgaaccaa
     5101 tcttccggcc tgtatgttca ccgttagcaa tgcgaatggc tgaacatttt agatcctgca
     5161 aagagtgcaa aacgatttca cagtgggagc caataagcat cgctaacccg tccaccaccg
     5221 cttcgtagga tttcagaata tcaaaatcgg tctggtcgaa aggacgttga tccagtaaat
     5281 ccaactcact ggtttcgttg gttaaaagcg acctggacat gaaaaaaaac actccttttc
     5341 aggagcctgt cgttaacttt tcagggcagg ctcattaatg atgcgggtaa ctaaattaat
     5401 acagcggagg ttccgctttc cagcactaat tatatccggc ctgtaataaa aaaaccgccg
     5461 cctggtcagg cggcggttct taatgcttat tttttagcag aatctgcggc tttcgcatca
     5521 gcttccggct ttgcatcagc cttcggtgct ggtttcacat ccagcagctc tacgtcaaac
     5581 accagggtag aattcggtgg gatccccgga acacccgctt tgccgtaagc cagttctggt
     5641 ggaataacca gtttgatctt accgcctttc ttgatgttct tcagaccttc tgtccaaccc
     5701 gggataacac cgtccagacg gaaagaaagc ggttcaccac gggtgtaaga gttgtcgaac
     5761 tctttaccgt cgatcagcgt acctttgtag ttcactacaa cagtatcgct gtctttcggt
     5821 gcttcgcctt taccggcttc tactacctga taaaccagac cagttgaaga ggttttcaca
     5881 cctttctctt tggcaaattt ctcgcggtac tctttacctt ttgcttcgtt atcagccgcg
     5941 tctttttcca tcttcgcctg agcagaagac ttcacgcgag cttcgaatgc ttgcagagtc
     6001 tgttcgatct cttggtcgga gagtttgctc ttatcagcaa atgcatcctg aacaccagcg
     6061 atcagctgat ctttatccag tttgatgccc agtttttctt gttctttaag agagttttcc
     6121 atgtaacgac ccagcgaagc acccagtgca taagctgatt tctgatcgtc atttttgaac
     6181 gctgctttgc tgtcagcagt tgtagcaggt tttgcagctt cagcagcaaa agtgattggt
     6241 gcatgcaggg caacggccat tgtggtcgcc agcagcgtta ctttaaacag tgatttcatc
     6301 catatctcca ggatcggggc atctcacccc agggttaact attatcagaa gggtactata
     6361 aagcgttgtc gaacaaatct acatacagac acgccctatt atcatctatt ttcagactct
     6421 ttttgtttaa attagtttcg atgaccgcga aatgagtgct gtctcgggca gcaaagttaa
     6481 gtagaatccg cggcaaccat tcgacaaaag aggtgaatca tgcaggattt atcattggaa
     6541 gcacgcctgg cagagctgga gagccgactg gcttttcagg aaagcaccat tgaagaactg
     6601 aacgtcacgg tgaccgctca tgaaatggag atggcgaaac tgcgcgatca tctgcgtctg
     6661 ctgaccgaga agttaaaagc cagccagccg tcgaacatcg cgtcgcaggc tgaagaaacg
     6721 ccaccgccac attattgagg cgtaaaaaaa gcggggattc cccgcttttt tgtcaccttt
     6781 tcggtattag tggcaaccac aaccgccgtt gcctttaccg ccacagcagc cttcgccacc
     6841 gtgttcatga ccgtgatcgt ggccatgacc gccgcagcaa ccgtcgtggt cgtgatcgtg
     6901 gtgatgatcg tgcgcgccgt gaacgtgacc atgagccagt tcttcttcgg tcgcttcacg
     6961 aatcgccaca acctcaacgt tgaatttcag gttctgaccg gccagcatgt ggttaccatc
     7021 aaccactacg tgatcgtctt caaccgcagt gatttcaacc ggtaccggcc cctggtcggt
     7081 ttcagccagg aaacgcatac ctacctgcag ttcatcaacg cccataaata cgtctttagg
     7141 aacacgttgc accaggtttt cgtcgtactg accgtaagcg tcgttcgcgc caacagcgac
     7201 atcaaatttg tcgccaactt catgaccttc cagcgccgtt tccaggccag agatcaggga
     7261 accgtgacca tgcaggtagt ccagcggcgc actcaccgga gactcatcaa ccaacacacc
     7321 gtcttctgta cgtacctgat aggccaggct gaccaccagg tcttttgcta ctttcatgat
     7381 atctcctgag catgggaaga atagtggcgc agattgtagc ggaattctgc agccgtgtac
     7441 tcactagctt aaaaaaactc ggcgcatatc gctagtccgg atgaaaaatc ccgatcactt
     7501 gctcatcttt gcgaacgtga tcgcgggctt ctttgtctgc ttctcgcatc tgatgtccgc
     7561 acttaacgca ttcaacaata tcaatattat tttcgcgcca catcgccatt gaatcctgtg
     7621 cctgacaggc cgggcatttt gcgcccgcaa taaaacgttt tcggattgcc atctttaccc
     7681 tctactcaaa ttcatcccag ccgtccagct ggcgtcgttc ttgttgcatt tcacgctgga
     7741 aaatctcttc cagttcgcgt cgggcttccc tggcgcgaga aatttgtaca gtatcggcat
     7801 gcattgggat gagctctcgc agcatccgca tatccaggcg gcgaaaatgc agttgcgccc
     7861 gctgcgcctg atgcggatgc atcccaagcg tgaccaaagt cttgcgcccc agctctaacg
     7921 cactggagaa tgtttcacgg gaaaactgcg tcacccctgc ctgtaataac tcatgcgctt
     7981 ccacacgtcc gcgcgctcgc gcaagaatat gcaaatgcgg aaagtgctgc tggcatattt
     8041 ccaccagctt catggtgtct tccggctcgt tacaggtaat gacgatagac tcagcggcct
     8101 ctgcacccgc agaacgtaat agatcgacct gcgtggcgtc gccgtaataa actttgtagc
     8161 catatttacg catcaggtta acggcgctga tatcccgctc cagcacggta atgcgcattt
     8221 tatttgccat cagcaaacga ccaatcacct gaccaaaacg cccgaagccc acgacaatga
     8281 cctggggttt atcatcgttg acccacggtt tttcgtcttc ttcttccggt ccgttaaact
     8341 ggcgggataa ccatttatcc accagcttca tcagcaacgg cgtggtcatc atggaaagcg
     8401 tcaccgtcac cgtcaccagc aacagcgcca tctggtcgcc ctggaataaa cgttgtgaag
     8461 aagcggtaga aaagaggaca aaggcaaact caccgccctg actcaacacg ccagcaaact
     8521 gcatccgctc tgagctacgc acgccataca atcgcgccag cagatacagc acgagaattt
     8581 tcaccgccac cagcacaacc acgcttatca ctacccacaa cagatgggta taaagcaccc
     8641 cgaggttgag cgacatgccg acagagataa agaacaaacc gagcagcaag cctttgaagg
     8701 gatcgatagc cgtttccagt tcatggcgat attcactttc cgccagcagc acgcccgcaa
     8761 taaatgtacc gagcgccatc gacagcccca gcgcatccat aaacaatgcg gaacccaaca
     8821 ccagcagcag cgtcgcggcg gtgaacactt cccgcacgcc agaagctgca ataaagcgga
     8881 ataccggacg cagtaaatag cgcccaccaa tcagcatgcc gacaaacgcc agcaccttca
     8941 tgccgatctt catccagtcg aaatgttcgt ctgccgaccc cgccaacaac ggcactaacg
     9001 ccagtgctgg gatcactgcc agatcctgaa acagcagaac cgaaaacccg agctggccgg
     9061 attcgctgcg attcatccct ttctcacgca tcaattgcaa cgccattgca gttgaagaca
     9121 tcgcaaggcc aatgccaccg accaccgccg cctgccaggc gaaatccgtc agcatcaata
     9181 atcccgccag caacgccgcg cttaacagca cctgtgccgc gcctacgcca aaaatcgaac
     9241 gccgcagttg ccaaagtttg gagggattca actcaaggcc gatgataaac atcaggaata
     9301 ccacgccgag ttccgaaaag tggaggatct catcgacgtc gctaataaac cccagccccc
     9361 acgggccaat tgcaatccct gccagcaaat atcccaacac agcgccaatc cccagccgcg
     9421 atgccaacgg caccgcagcc accgccgcga agagaaacag cactcctgcg agtaaaaaat
     9481 cggaaccttc catcagcggc ctcctggaga cagcggattt gccagccagt caccgtaggc
     9541 tctggcgtgg ttcgccagct cctttgcact ttgccgtctc gcccagtaaa taatgatggg
     9601 acttaaccaa tgcatccggc acatgcccgc cgccagttca aaggggcgca gcacatcgct
     9661 catcgggtag cgattcagcg cgtcataacg gtaagcactt tccggctcgc cggtggtaat
     9721 cacgttacgc cagtactttc ccgccagttg gtttcctccc ggcccgctgg caaaaccacg
     9781 acttaatacc cggtccagcc actctttcag tagcgccggg cagctatagg tataaagagg
     9841 atgctgaaag acaatcacct cgtgctcgcg cagtaatgcc tgctcacggg ggatatcaat
     9901 aaaaaaatcg ggatagtgcg cgtaaaggtc gtgcacggta acattgctga gctgcgtggc
     9961 cggtttaagc agtacccggt ttgccaccga gtcctgagat tccggatggg catacagcag
    10021 caaaactttc gctggctgag acatcatccc cctcccggta tggtttttgt gtatagtcgc
    10081 tgttttgggc taccattgcg cccggtgcgg cagctcgccc atacattatc ataatgataa
    10141 gttaacatag tctgaacata cggcgcctta tgattgtttt ctcctcgtta caaattcgtc
    10201 gcggcgtgcg cgtcctgctg gataatgcca ccgccaccat caaccctggg cagaaagtcg
    10261 gcctggtggg taaaaacggc tgtggtaaat ctaccctgct ggcattgctg aaaaatgaaa
    10321 tcagcgccga cggcggcagc tacacctttc cgggaagctg gcaactggcg tgggtgaatc
    10381 aggaaacgcc ggcgttatcg caagcggcgc tggaatatgt cattgacggc gaccgtgaat
    10441 atcgtcaact ggaagcgcag ctgcacgacg ccaacgaacg taacgacggg cacgccattg
    10501 cgaccattca tggcaagctg gatgctattg acgcatggag tattcgctcc cgtgccgcca
    10561 gcctgctgca cggcctcggt ttcagcaatg aacaactgga gcgcccggta agtgatttct
    10621 ccggtggctg gcgtatgcgt cttaaccttg cccaggcgct gatttgccgt tcagacttgc
    10681 tgctgctcga cgaaccgact aaccacctcg atctcgatgc cgttatctgg ctggaaaaat
    10741 ggttgaagag ctatcaaggc acgctgatcc tgatctctca cgaccgcgac ttcctcgatc
    10801 cgatcgttga taaaattatt catatcgaac aacaaagcat gttcgagtac accggcaact
    10861 acagttcgtt tgaagtacag cgcgccaccc gtctggcgca acaacaagcg atgtatgaaa
    10921 gccagcagga acgcgtggca catctgcaaa gttatatcga ccgtttccgt gccaaagcca
    10981 ccaaagcgaa gcaagcccag agccgcatta agatgcttga gcgtatggag ctgattgccc
    11041 ccgcgcacgt cgacaacccg ttccgcttta gcttccgcgc gccggaaagc ctgccaaatc
    11101 cgttactgaa gatggaaaaa gtcagcgcgg gctatggcga tcgcattatt ctcgactcga
    11161 ttaaactgaa cctggtgccc ggctcgcgca ttggtctgtt aggccgcaac ggcgcgggta
    11221 aatcgacatt aatcaaactg ttagccggtg aacttgcgcc agtcagcggt gaaattggtc
    11281 tggcgaaagg gatcaagctc ggctacttcg cccagcatca acttgaatac ctgcgcgccg
    11341 acgaatcacc tattcaacat ctggcacgtt tagcgccgca ggagctggaa caaaaactgc
    11401 gtgactacct cggcggcttt ggtttccagg gcgataaagt aaccgaagaa acgcgccgct
    11461 tctccggtgg ggaaaaagcc cgcctggtgc tggcattaat tgtctggcag cgtccgaatc
    11521 tgctgctgct cgacgaaccg actaaccacc ttgacctcga catgcgtcag gcactcaccg
    11581 aagcattaat cgagtttgaa ggcgcgctgg ttgtcgtttc gcacgaccgt catttgctgc
    11641 gttccaccac tgacgatctc tacctggttc acgatcgtaa agtcgaaccg ttcgacggcg
    11701 atctggaaga ttatcaacag tggttgagcg acgtacaaaa gcaggaaaac cagaccgacg
    11761 aagcgccaaa agagaacgcg aacagcgccc aggcacgtaa agatcagaag cgtcgggaag
    11821 cggagctgcg tgcgcaaacc cagccgctgc gtaaagagat tgcccgtctg gaaaaagaga
    11881 tggagaagct gaacgcgcaa ctggcgcagg cggaagagaa actcggcgac agcgaactgt
    11941 atgaccagag ccgtaaagcg gagttgaccg cctgcctgca acagcaagcc agcgccaaat
    12001 ccggcctgga agagtgcgaa atggcgtggc tggaagccca ggagcagctt gagcagatgc
    12061 tgctggaagg ccaaagcaac tgatggcgca gataacgacg accgatgcca atgaattcag
    12121 cagcagtgct gaattcaccc ctatgcgcgg ctttagcaat tgtcatctac aaactatgct
    12181 gccgcgtttg tttcgtcgtc aggtgaaatt caccccgtac tggcagcggc tggagttgcc
    12241 cgacggcgat tttgtcgatc tcgcgtggag tgaagcccct gcacaggctc ggcataaacc
    12301 gcgtttagtg atatttcacg ggctggaagg cagtctcaat agcccttacg cccacggtct
    12361 ggttgaggcg gcgcaaaagc gcggctggct gggcgtggtg atgcattttc gcggatgcag
    12421 cggtgaacca aaccgtatgc accgcattta ccattcgggc gaaaccgaag acgccagttg
    12481 gtttttacgc tggctgcaac gcgaatttgg tcatgcgcca acggctgccg tcggctattc
    12541 gctcggcggt aatatgctgg cctgtttgct ggcaaaggaa ggcaatgatc tcccggttga
    12601 tgcggcggtg attgtctctg cgccgtttat gctggaagcc tgtagctatc atatggaaaa
    12661 gggcttttcc cgcgtttatc agcgttactt gctgaacctg ttaaaagcca atgccgcgcg
    12721 caagctggca gcctaccccg gaacgctgcc gattaatctc gcgcagttaa aatcggtacg
    12781 tcgcatccgt gaatttgacg atctaatcac cgccagaatt cacggctacg ccgacgctat
    12841 cgactattat cgtcagtgta gcgccatgcc gatgctgaac cggatcgcca aaccgacgct
    12901 gattattcac gccaaagacg atccgtttat ggatcatcag gtgatcccga aaccggaaag
    12961 tctcccctcg caggtggagt atcaactgac tgaacatggc ggtcatgttg gctttattgg
    13021 cggtacatta cttcatccgc aaatgtggct ggagtcacgc attcctgact ggttaacaac
    13081 gtatctggag gcgaaatcat gttgattccg tggcaagacc tctcccccga aacgctggaa
    13141 aatttaattg aaagctttgt gttacgtgaa ggcaccgatt atggtgaaca tgagcgtaca
    13201 cttgaacaga aagtcgccga cgtcaaacgc cagctacagt gcggagaagc ggtgctggta
    13261 tggtcggagc tgcacgaaac ggtcaatatt atgccgcgca gtcagtttcg cgaataacct
    13321 gcaaccgtcg gcggacgaga taataatgat agctaagtca tggagttact atgtctgcca
    13381 aacatccggt cattgcggta acaggatcca gcggcgcggg gaccaccacc accagcctcg
    13441 cgtttcgtaa aatattcgcg cagttaaatc tgcatgcagc tgaggtggaa ggcgacagtt
    13501 ttcaccgtta cacccgcccg gaaatggaca tggcgatccg caaagcgcgc gacgccgggc
    13561 ggcatatcag ctacttcggc cccgaagcga acgacttcgg cctgctggaa caaaccttca
    13621 ttgaatacgg tcagagcggc aaagggaaat ctcgcaaata tctgcatacc tacgacgaag
    13681 ccgtaccgtg gaatcaggta ccgggaacat tcaccccctg gcaaccttta ccagaaccca
    13741 ctgatgtact gttttatgaa ggtttacacg gcggcgtagt cacgccacag cataacgttg
    13801 cgcagcatgt ggacttactg gtcggcgtag tgcctatcgt taaccttgag tggattcaaa
    13861 aactgatccg cgacaccagc gagcgcgggc actcacgaga agcagtgatg gactcagtag
    13921 tgcgttcaat ggaagactat atcaactaca tcacaccgca gttttcccgc acccatctta
    13981 acttccagcg cgttcccacc gtcgacactt caaacccgtt cgcggcaaaa ggtatcccgt
    14041 cgctggatga aagctttgtg gtgatccatt ttcgtaatct ggaagggatc gatttcccct
    14101 ggctgctggc gatgttgcaa ggctcattca tttcccacat caatacgtta gtggtaccgg
    14161 gcggcaaaat gggtctggca atggaattaa ttatgctgcc gctggtgcaa cgattgatgg
    14221 aaggaaagaa aatcgagtaa ctctgctatt acgccggata aaatactatc cggcttcaca
    14281 acgggatagt taaatcacgc ggcaaccact tcatacgagt gagtaatatt caccgctttt
    14341 tccagcatca acgccactga acaatatttc tcggcagaga gatcaaccgc acgcgcaacc
    14401 gctgcgtctt tcaggtcgcg accggtgacg ataaaatgca gattaatgtg cgtaaacagg
    14461 cgtggtgcct cttcgcggcg ttcagaggtc aattttactt cacaatcgac cacatcctga
    14521 cgcccttttt gcaggatcga aaccacatcg atggcact
//
LOCUS       DAJVSY010000103        14502 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.103, whole genome shotgun sequence.
ACCESSION   DAJVSY010000103 DAJVSY010000000
VERSION     DAJVSY010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14502)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14502)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14502
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.103"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..787)
                     /gene="fimH"
                     /locus_tag="OQQ19_002793"
     CDS             complement(<1..787)
                     /gene="fimH"
                     /locus_tag="OQQ19_002793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria D-mannose specific adhesin FimH"
                     /protein_id="HCS1804355.1"
                     /translation="MKRVITLFAVLLMGWSVNAWSFACKTANGTAIPIGGGSANVYVN
                     LAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSS
                     YPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNS
                     DDFQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPIPLTVYCAKSQNLGYYL
                     SGTTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIPANNTVSLG"
     gene            complement(807..1310)
                     /gene="fimG"
                     /locus_tag="OQQ19_002794"
     CDS             complement(807..1310)
                     /gene="fimG"
                     /locus_tag="OQQ19_002794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria minor subunit FimG"
                     /protein_id="HCS1804356.1"
                     /translation="MKWRKRGYLLAAILALASATIQAADVTITVNGKVVAKPCTVSTT
                     NATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQG
                     TAQNIQLELQDDSGNTLNTGETKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVI
                     SITYTYS"
     gene            complement(1323..1853)
                     /gene="fimF"
                     /locus_tag="OQQ19_002795"
     CDS             complement(1323..1853)
                     /gene="fimF"
                     /locus_tag="OQQ19_002795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709916.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria minor subunit FimF"
                     /protein_id="HCS1804357.1"
                     /translation="MRNKPFYLLCAFLWLAVSRVLAADSTITIRDYVRDNGCSVAAES
                     TNFTVDLMENAAKQFNNIGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLA
                     LENTVSAASGLGIQLLNEQQNQIPLNAPSSAISWTTLTPGKPNTLNFYARLMATQVPV
                     TAGHINATATFTLEYQ"
     gene            complement(1863..4499)
                     /gene="fimD"
                     /locus_tag="OQQ19_002796"
                     /pseudo
     CDS             complement(1863..4499)
                     /gene="fimD"
                     /locus_tag="OQQ19_002796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418737.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial usher FimD"
     gene            complement(4566..5291)
                     /gene="fimC"
                     /locus_tag="OQQ19_002797"
     CDS             complement(4566..5291)
                     /gene="fimC"
                     /locus_tag="OQQ19_002797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418736.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria chaperone FimC"
                     /protein_id="HCS1804358.1"
                     /translation="MSNKNANVRKSQEITFCLLAGILMFMAMMVAGRAEAGVALGATR
                     VIYPAGQKQVQLAVTNNDENSTYLIQSWMENADGVKDGRFIVTPPLFAMKGKKENTLR
                     ILDATNNQLPQDRESLFWMNVKAIPSMDKSKLTENTLQFAIISRIKLYYRPAKLALPP
                     DQAAEKLRFRRSANSLTLINPTPYYLTVTELNAGTRVLENALVPPMGESTVKLPSDAG
                     SNITYRTINDYGALTPKMTGVME"
     gene            complement(5328..5867)
                     /locus_tag="OQQ19_002798"
     CDS             complement(5328..5867)
                     /locus_tag="OQQ19_002798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418735.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS1804359.1"
                     /translation="MKRKRLFLLASLLPMFALAGNKWNTTLPGGNMQFQGVIIAETCR
                     IEAGDKQMTVNMGQISSNRFHAVGEDSAPVPFVIHLRECSTVVSERVGVAFHGVADGK
                     NPDVLSVGEGPGIATNIGVALFDDEGNLVPINRPPVNWKRLYSGSTSLHFIAKYRATG
                     RWVTGGIANAQAWFSLTYQ"
     gene            complement(5932..6480)
                     /gene="fimA"
                     /locus_tag="OQQ19_002799"
     CDS             complement(5932..6480)
                     /gene="fimA"
                     /locus_tag="OQQ19_002799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial major subunit FimA"
                     /protein_id="HCS1804360.1"
                     /translation="MKIKTLAIVVLSALSLSSTAALAAATTVNGGTVHFKGEVVNAAC
                     AVDAGSVDQIVQLGQVRTASLAQEGATSSAVGFNIQLNDCDTNVASKAAVAFLGTAID
                     AGHTNVLALQSSAAGSATNVGVQILDRTGAALTLDGATFSEQTTLNNGTNTIPFQARY
                     YATGVATPGAANADATFKVQYQ"
     gene            complement(6957..7553)
                     /gene="fimE"
                     /locus_tag="OQQ19_002800"
     CDS             complement(6957..7553)
                     /gene="fimE"
                     /locus_tag="OQQ19_002800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313299.1"
                     /note="upgraded from regulatory protein to switch DNA
                     invertase; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria switch DNA invertase FimE"
                     /protein_id="HCS1804361.1"
                     /translation="MSKRRYLTGKEVQAMMQAVCYGATGARDYCLILLAYRHGMRISE
                     LLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVERWTLERANWKGADRTDAI
                     FISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYL
                     GHRNIRHTVRYTASNAARFAGLWERNNLINEKLKREEV"
     gene            complement(8031..8633)
                     /gene="fimB"
                     /locus_tag="OQQ19_002801"
     CDS             complement(8031..8633)
                     /gene="fimB"
                     /locus_tag="OQQ19_002801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria switch DNA invertase FimB"
                     /protein_id="HCS1804362.1"
                     /translation="MKNKADNKKRNFLTHSEIESLLKAANTGPHAARNYCLTLLCFIH
                     GFRASEICRLRISDIDLKAKCIYIHRLKKGFSTTPPLLNKEVQALKNWLSIRTSYPHA
                     ESEWVFLSRKGNPLSRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRL
                     IQDYLGHRNIRHTVWYTASNAGRFYGIWDRARGRQRHAVL"
     gene            10089..10805
                     /gene="nanC"
                     /locus_tag="OQQ19_002802"
     CDS             10089..10805
                     /gene="nanC"
                     /locus_tag="OQQ19_002802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313297.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminic acid outer membrane channel
                     NanC"
                     /protein_id="HCS1804363.1"
                     /translation="MKKAKILSGVLLLCFSSPLISQAATLDVRGGYRSGSHAYETRLK
                     VSEGWQNGWWASMESNTWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGMLTHF
                     SSNGTRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDLSSDMSRDNVHRWDGYVTYH
                     INSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGV
                     YNGRDNLSENSYRIGVSFKL"
     gene            10825..11931
                     /gene="nanM"
                     /locus_tag="OQQ19_002803"
     CDS             10825..11931
                     /gene="nanM"
                     /locus_tag="OQQ19_002803"
                     /EC_number="5.1.3.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418730.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate epimerase"
                     /protein_id="HCS1804364.1"
                     /translation="MNKTITALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIG
                     LGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNREGLTQ
                     VFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNE
                     AGKDSTAVDKINAYYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK
                     GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIF
                     AGGAGFKGSRENYQHGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW
                     NNSLLIIGGETAGGKAVTDSVLISVKDNKVTVQN"
     gene            11996..12976
                     /locus_tag="OQQ19_002804"
     CDS             11996..12976
                     /locus_tag="OQQ19_002804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709926.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="HCS1804365.1"
                     /translation="MDAIISPDYYYVLTIAGQSNAMAYGEGLPLPAREDAPHPRIKQL
                     ARFAHTHPGGPSCHFNDIIPLTHCPHDVQDMQGYHHPLATNHQTQYGTVGQALHIARK
                     LLSFIPDNAGVLIVPCCRGGSAFTAGSEGTYSERHGASHDACRWGTDTPLYQDLVSRT
                     RAALAKNPQNKFLGVCWMQGEFDLMTSDYASHPQHFNHMVEAFRRDLKQYHSQLNNIT
                     DAPWFCGDTTWYWKENFPHAYEAIYGNYQNNVLANIIFVDFQQQGERGLTNAPDEDPD
                     DLIMGYYGSAYRSPENWTTALRSSHFSAAARRGIISDRFVEAILQFWRGK"
     gene            complement(12984..13106)
                     /locus_tag="OQQ19_002805"
     CDS             complement(12984..13106)
                     /locus_tag="OQQ19_002805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012139841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HCS1804366.1"
                     /translation="MISFVFLLLVCPNCHAMLHRRKPPFTPEELKALMDANKSN"
     gene            13188..14060
                     /locus_tag="OQQ19_002806"
     CDS             13188..14060
                     /locus_tag="OQQ19_002806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004186812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HCS1804367.1"
                     /translation="MASSKSLQQAIANIKIWHKGEQRAPHKPLLLLYVLAGYLNGHPR
                     LFDYGSEIYEPLHSLLERFGPQRSQYRPDMPFWRLQGDGFWQLHNAELCSTAGSSRQP
                     PVKELNEYHVAGGFDEQHYALVTGNKKLINTLAQQILEAHFTESIQEEIADELGFDLQ
                     QIRKQRDPLFRKNVLRAYNYQCAICGFNMRHDDTTVALEAAHIKWKQHGGPCEIPNGL
                     ALCAIHHKAFDKGSIGLDENMRVLVSDAVNGGGSVERLFWDFDGKIIALPQVRKNYPY
                     EGFVEWHRNEVFRG"
     gene            14105..14284
                     /locus_tag="OQQ19_002807"
     CDS             14105..14284
                     /locus_tag="OQQ19_002807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001153035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804368.1"
                     /translation="MQDLAASLQLAFDSGAKRVLLPISWAMDIPTVPAELFTKFQVSF
                     YSEPVDAVYKALDVN"
BASE COUNT         4061 a         3345 c         3166 g         3930 t
ORIGIN      
        1 ctcctaacga taccgtgtta ttcgctggaa taatcgtacc gttgcgcgtc aactgtacgc
       61 cgacgccctg cgctggtgaa aacgacgcgg tattggtgaa aatcgagttg cccgcatctg
      121 cggttgtgcc ggagaggtaa taccccaggt tttggctttt cgcacaataa acggtaagag
      181 gaattggcac tgaaccaggg tagtccggca gagtaacggt gacatcacga gcagaaacat
      241 cgcagccgcc agtaggcacc accacatcat tattggcgta aatattccac acaaactgga
      301 aatcatcgct gttatagttg ttggtctgtc gcaaaataag cacggcaatt aatgagccag
      361 ctttaatcgc caccccgccc gcactgctca caggcgtcaa ataaagcgcc accggccacg
      421 gcttatccgt tctcgaatta taaacaaccc gcggcgtttc gctggtggtc ggaaatggat
      481 agctactgcc actatatttt acggtcccgg aaaaattaga taacacgccg ccataagccg
      541 agcctcgttg cagtgtgaca tagtctgtaa tggtttccgg ataatcgtta tggcaaaaga
      601 tttgcgtcga aagatctacg accaggtttt gccccacatt cacgacaggc gcaaggttta
      661 cataaacatt agcgctgcca ccgccaatag ggatagcagt accattggcg gttttacagg
      721 cgaatgacca ggcatttacc gaccagccca tcagcagtac agcaaacagg gtaataactc
      781 gtttcattac aattatctct tcgggttcag ctgtaggtat aggtgatgct aatcactgcc
      841 tgaatggttc cctgagtggc tccgccattt accgtcaatg ctctgacctg taacgggaag
      901 tgcgctgatt gtgaggaatc atccacctga actgttttgg tttcgccagt attcaatgtg
      961 ttgccactgt catcctgtag ctctaactgg atgttttgcg cggtcccctg gtttttataa
     1021 tatccggtac tgtcggctgc cccgctgaag ctggcagtga ccctcgacgt tcccaccgga
     1081 caattagtca actcaagcgc aacatcatgc caggccgatg ccgccccggc agacatcaga
     1141 ctgaaagaat aaagatcgcc gagatcaacc gtggcattgg tggtggaaac tgtgcacggt
     1201 ttggcgacga ccttaccgtt caccgtgatg gtgacatcgg ctgcctgtat tgtcgcactt
     1261 gcgagcgcca atattgccgc caataaatac ccacgtttgc gccatttcat gagcatctcc
     1321 agttactgat attcaagagt gaaggtagcc gtggcattga tatgccccgc agtgacaggc
     1381 acctgtgtcg ccattagccg ggcgtaaaaa ttcaacgtat ttggtttacc cggcgtcagg
     1441 gtcgtccacg aaatcgcgga cgatggagca ttaaggggta tctgattttg ctgctcattc
     1501 agaagctgta ttcccagtcc cgaagccgct gacaccgtat tttcaagtgc aagcaggttg
     1561 gcattgtggc tatctgcaac gccggtaaac ccaaccttta cggcagaaac ggcgttacca
     1621 cagggtgaca gcaaaatacg aaatggaacg acaggagtcg ttgcgccaat gttgttaaat
     1681 tgcttcgccg cgttttccat cagatcaaca gtaaaattgg ttgattcagc ggccacacta
     1741 cagccgttat ctctgacata gtcgcggata gtaatcgtgc tatccgcagc caaaacgcga
     1801 cttaccgcca gccacaaaaa agcgcacaga agataaaaag gtttgtttct catcacgccc
     1861 ccttaacgac attcagctga tagctgggtt aataactgct gctgactctc tggtggcagt
     1921 tgataattgg cgatacagtg agcattttcc tcttctcccc atttcacctg aacttttccc
     1981 gctaaaggca ttccgctgag gtaaacctga ccattatccg caacaatgcc gctactctgg
     2041 ctactctctg atgtcaccat cgccccaaac ggcagcggct tattattgtg ggttagcgtc
     2101 atgagcagtt ttatcccaac gcgcgcttta aactctgctc gcacgatcgc cccacgagtg
     2161 ggaacaacgt tagcgaccgc gttatctaaa tcgacgttat cagccagggt attggtatcc
     2221 agcgccactc tgttttcccg atattcggtg gcataaggca gcacggcata accgcgccag
     2281 tcggtacgca cccccgtctg gttttcgact tttgcatctt ttgcgccagg cgctttaaca
     2341 agtaccaccg tatcgtttaa cggctgcccc agcgttacgc cattggcatg agccagtacc
     2401 ccaccgctga ctccgtaata gagctgctta atatcatcgc tatggctgta accgatattg
     2461 gcattgccgt aaccaccgcg ataattcagc gtggcgtagc ctgtacttcc gctattacca
     2521 tcgcctcccc cggcatagcc ggtttgcacg ctatagctga ggttgttgtc ttccagcaac
     2581 gtaccgtata caccagccag attggtcatc cgaccgttga gatcgtgtga cacgctgtag
     2641 ctggcactgg catgtcgcca ctgagattta ctgtcagaac gcagccagtg gctgaaagga
     2701 atattgacgt taagcgctaa catctgatcc cgcccttttt gccaggcgtt tttcgtcagg
     2761 ctatagctga gcgtccagtt gatatcttcg aacgcagtat ttaatccagc ctagaattgc
     2821 tcatcgacat tactcgttcc ccaataagtt tgatggctac cactcaaata cagtgttgat
     2881 gtgcgcccga gttgctgagt aacggtgagc tgtaatttcc cgcgtttgtt ataagcgagg
     2941 ttgtaatagt cggtgaattt cggcttaacc tgaataactc catcctgtgt ttcgatgttg
     3001 tagccattca ttcgactgta tgttgtatca gcgaaattaa aatatccgct ggtcgaataa
     3061 cggtaaccca ctaactgaat attcgtgcct gactcattga gcgatttgtt atagagaaaa
     3121 cgcaccgatt gtccgtcatg ctgactgtca tcgggaagtg tggaattagc ctgcgtcata
     3181 tccacagaca gagcgcccag tgcccccatg tttttcccga taccgaaatt aaaagcacga
     3241 taacgatccg ccagttgcgt tccaccatat attgtccagc cagccggaag gccgtggagt
     3301 aatgtacttt ggaaaaagcg gggtttttcc tgctgcgtat ttccactacg gtattctcct
     3361 gccgtaatgg aataacgagt atgcccttca cgttgcaaaa gcgggactga cgaatagggt
     3421 acggtaaaaa tctgcgtgct gccgtcagcc tctttgatcg ttacctgcaa gtcaccacta
     3481 ttacctgcgg catagatatc gttgatggta aaaggccccg gtggcaccgt actattataa
     3541 atgtcatacc cattttgttt aatagtgacc tgtgcagtac cacgagcaat accgtggatc
     3601 accggggcaa atcctctttg gctatcgggt aacatattgt catctgaggc caattgtgcg
     3661 ccgcgaaagt taataccatc gaaaatatcg ccctgggtat aaccatcacc cagcgtcagc
     3721 cgggaacgta acggtattat gtctcgctca agccaggtat tgatatgctg ccatttattt
     3781 ttgctacctg atgatctgtc gctactgtta taactccagc tggtattgtc gcgtaaacac
     3841 cacgcaccaa tatttaaccc actctgtagg tttaaatatg cataatggct gttaccccca
     3901 atctgattct gtacactatt tccgctgaaa ttataattga gcaatccggc attaataccg
     3961 ggatcccata actcaggagg aatataacca cgcgcgcgat tactcataaa tgcctgaggg
     4021 atcgtcaggt tcagtcgctg ctgaccaaca tccagatgcg cagtagcgtc atggatcatt
     4081 gaggttaatg gcacgcaggc atcatctgcc agcagattca taccggagac agaagccgca
     4141 ttcagcccca tactggcaag ttgcgcgcgt gtcaggcagg gaacaatccc ttgttcactg
     4201 tcgcccgtat taaatgtgac atcacgcgtt gccatataac cattattcaa atagatatcg
     4261 acgcgatacg tccctggcgg taattcttgc ccattttcaa aacgcgataa atcggccaca
     4321 gcctggggat catccgctaa aaagcgcgga ttaaaataga gttcggcaga tgacaaaggt
     4381 gcctgtgcgg caaaagcaca ggcgacaacg agccggacaa aaaaaccagc caaacgatgc
     4441 ttacgaatat gcaagcattg tgtgtttcgc tggtaaagtc ttaaattcag atatgacatt
     4501 attcctccgg tttaaaatta cccggcagtc aattcttttt attcaggcga gaaattcccc
     4561 ctgcgttatt ccattacgcc cgtcattttg ggggtaagtg cgccataatc atttattgtt
     4621 cggtaagtaa tattgcttcc tgcatcagaa ggcaatttaa ccgtgctttc gcccattgga
     4681 ggcaccaatg cattttcaag aacccgggtt ccggcattca actctgttac cgtcagataa
     4741 tagggtgtcg ggttaatcag cgtcagagaa ttcgcgctac gacgaaatct taatttttct
     4801 gcggcctgat cgggtggcaa cgctaattta gccgggcgat agtacagttt aatgcggctg
     4861 ataattgcga actgtagcgt attctcagtc aattttgatt tatccattga cggaatcgct
     4921 ttaacattca tccagaataa actttcccgg tcctgtggca attggttatt tgttgcatca
     4981 agaatacgca aggtattctc tttttttccc ttcatcgcaa acagaggagg cgtcacgata
     5041 aaacgaccat cctttacacc atcggcattt tccatccatg attgaattaa ataggtacta
     5101 ttttcatcat tatttgtcac ggcaagttgc acttgttttt gccctgccgg ataaattacg
     5161 cgagtcgcac ctaaggccac tcccgcttca gcgcgtccgg caaccatcat tgccatgaac
     5221 atcaggatac ctgccagcaa gcagaatgtt atttcctgcg atttccttac attggcgttt
     5281 ttattactca ctgtcctgtt cctgttatca cattatctgc tgaacaatta ctgataggtt
     5341 aaagagaacc aggcctgggc attggcgatg ccgccagtaa cccaacgccc ggtagcacga
     5401 tatttggcga tgaaatgtag cgaagtagag cctgagtaaa gccgtttcca gtttactgga
     5461 ggacgattaa tcggtacgag gtttccttca tcatcaaaca acgctacgcc aatattggtg
     5521 gctatccctg gcccctctcc cacggaaagc acatccggat ttttaccatc cgcgacaccg
     5581 tgaaacgcca cacccacacg ttcactcacc accgtgctac attcccgtaa atgaataaca
     5641 aaaggcaccg gtgcgctatc ttcccctacc gcatgaaacc ggttactgct gatttgcccc
     5701 atattgaccg tcatttgttt atcaccggct tcaatccggc aagtttccgc aataatgacg
     5761 ccctgaaatt gcatatttcc gccgggcagc gtagtattcc atttatttcc ggccagagca
     5821 aacattggca gcaacgacgc taatagaaat aatctcttcc ttttcatcgt tatttttatc
     5881 gcacaagggt gggcatccct gcccgtaatg acgtccctga acctgggtag gttattgata
     5941 ctgaaccttg aaggtcgcat ccgcattagc tgcgccaggg gttgcgacac cggttgcata
     6001 ataacgcgcc tggaacggaa tggtgttagt accgttattc agggttgttt gctcactgaa
     6061 tgtcgcacca tccagcgtca gcgcagcacc cgttctgtcc aggatctgta caccaacgtt
     6121 tgttgcgcta cccgcagctg aactctgcag agccagaacg ttggtatgac ccgcatcaat
     6181 cgccgtacct aaaaaggcaa ctgcggcttt agatgcaaca ttggtatcgc aatcattcag
     6241 ctgaatgtta aaaccgacag cagaactggt tgctccttcc tgtgccagcg atgcggtacg
     6301 aacctgtcct aactgaacga tttgatcaac agagcctgca tcaactgcgc aagcggcgtt
     6361 aacaacttcc cctttaaagt gaacggtccc accattaacc gtcgtggcag cggccagagc
     6421 cgctgtagaa ctgagggaca gagccgacag aacaacgatt gccagagttt taattttcat
     6481 gctgctttcc tttaaaaaaa ctatttctaa atcgacatgg gcagtcgttc tgtacacttt
     6541 gttttgtcaa cgagtttgac tgccaacact gcacagtttt cccccaaaag atgaaacatt
     6601 tggggccatt ttgactcata gaggaaagca tcgcgcacaa actttttcag tttatttgtt
     6661 ggcttaatat tctattgtta tctttattta tagattttta tattgcatga ggtggttttt
     6721 ggagagaaga atgaggaaga tgcgtcgagc cacagaaacg ttagctttac atatagcgga
     6781 ggtgatgtga aattaattta caagagaaat aatttacata tcaaacagtt agatgatttt
     6841 tgtcgttttt taaaattttt atgcttgaga aaaaatacgt aacttattta tgatatggac
     6901 aatttggccc caattgtctt gtatttattt tttaacttta ttatcaataa gttaattcaa
     6961 acctcttctc tttttaattt ttcgtttatg agattatttc tttcccataa tccggcaaaa
     7021 cgagcagcat tactggcggt ataacgtaca gtatggcgaa tatttcgatg cccgagataa
     7081 tcctgaatta aacgagtatc tgcaccacgc tccgccagtt cataaccgca agcatgcctt
     7141 aacatatgag gatgagtctg cgttacggtt ccagcttcaa taccggcatc acgaataatg
     7201 cgataggcct gctggcgaga aagccgactc ccgcggcgag aaataaatat ggcgtcggtc
     7261 cggtcagcgc ctttccagtt agcacgttcc agggtccagc gttccacagc ttcacgctca
     7321 tcaaaacgta acgggtgaac ggtagaaaat ccgttcttca gtcggcgaat atttattcga
     7381 ccttcattaa ggtcaagatc ctgataatgc agatcaagca gttcactaat acgcatccca
     7441 tgccgatatg ccaacagaat aagacaataa tctctggctc ccgttgcccc gtaacaaacc
     7501 gcctgcatca tggcctgaac ttctttaccg gtaagataac gacgtttact cacaatagta
     7561 gtactcctaa ctgagatata tttgaatgaa tacctatagg aaacctcaat cggtcaaaat
     7621 tagcccaata gataaaaaga taaccacaca cgaagtgatg tggctatcag tcaattacat
     7681 taaatatcat acaaaaataa aatatcactg atgtgacaac atctattttc attgatttga
     7741 ttcaatataa caatagattg tagtagatta gcttccagtt gcttaaaaaa taaagaaaaa
     7801 agtgcgaaaa caggagaatt taagtgatgt gtaaatttat gaatgatttt gtttatttat
     7861 tttgaagaac ataaaccatt gtattttgta tggatatggt taacttaatg cttattatga
     7921 taattaagaa ttatacttac aataacatca attaataaat ggttaatcat ttttgatata
     7981 tcgtaagaat aatgtagttt ttaacaccat ccctggtatc tcaactatct ctataaaaca
     8041 gcgtgacgct gtcgtcctct ggctctatcc cagatgccgt aaaaacgccc tgcattgctg
     8101 gcggtatacc agacagtatg acgaatattg cgatgcccaa gataatcctg gataagtcgc
     8161 gtatctattc ccatattcgc caaagcaaaa ccacacgaat ggcgtaacat gtgcggatga
     8221 atctccagtg acaacccggc attaccaccg gaagtcgaga taatatggta aaactgttgc
     8281 cgagaaagcg gattcccctt acgcgataaa aatacccact cgctctcagc atgcgggtac
     8341 gaagtacgga tactcaacca gttttttaaa gcctgaactt ctttattcaa tagcgggggc
     8401 gttgttgaaa agcctttttt taatcgatgg atatatatac actttgcctt aagatcaata
     8461 tccgaaatcc tcaatcgaca aatttcactc gcccggaaac catgaataaa acaaagcaaa
     8521 gtcagacaat aattacgtgc tgcatgaggc ccggtatttg ctgctttaag gagtgattcg
     8581 atttcactat gggtcaggaa gttccttttt ttgttatcag ccttattctt catcgttttt
     8641 cccttataat tacagacgcg cactagctgt gctgggttag caataatcca acatttttat
     8701 cctgattatg tttataaaag cgaacgtttg cttaataact aacgtaagtg gaccagttct
     8761 tctgagtgaa cttaaatggg gtagcaacag ttaattataa taacgttgcc atacaaacgc
     8821 tatgctcttg catgctatgt acctttatat atttatcaat cggatacgaa tctaataata
     8881 cccctcatca ttaatgcaac taatcttatc tatatatcat gtgatatgtt ctgtaacaag
     8941 taaaatcagc ataaaaaatt cagcaaaatt taatattcgt tcaactagcc gtctcacata
     9001 tgacattatt agtcaactcc atttgccaca aaatggctat ttcatggaac gcagtaattt
     9061 cttagtggct attatcatgc taattcttag gtccctagcg attattcctg gctgattcgt
     9121 cagcttacgc catgagattg ttacattcct ttttatcctg gagatatggg ggaacgcagg
     9181 agatgatttt ttcatctaca ttcgttggta aatatagctt tggtcactac gacttaaacc
     9241 ttcctcaatc acagccattc gccgggcgat acggcaaaca aactaagtga aacatcatcc
     9301 tgaaaacacc aacatcaaca agcctctcca gatcgacttc agaagtgacc agttacaagc
     9361 cacaaaccag gaaacatatt tcatgatgag aattatgctc agcctgatgg cgggtaaaca
     9421 ctgattttca ccaagctcac tgagttagct tgcaaagctt cccttgttta gactccaaat
     9481 aaattattta taaaacaaac atttaaacaa agatctttag tttttgaaga ccaccgcaag
     9541 tgttcgtctg gcttcacatg gcatcttcct cttagaaaaa gatcgacata ttttgtgaca
     9601 cgaattgcaa atctggtttt gttgtatgga ttgcgtgatt tttgatctgg tataacaggt
     9661 ataaaggtgc accaagatag tcaatgagac agggcatctc gcaatctatg gcaaacatca
     9721 cttcagttct ttctcatcgg gtgatgaaaa cgcacttcag tctgaaagga atatgaaaat
     9781 gagatcaaca gacactctat tttatgactc tgggtaaaat ggattgagta agtgatatag
     9841 cttacgaaaa ttcaaatcaa ttaaacatca gaagagattt tatactcagg tatttaatct
     9901 ggatctctgt ttatttaaat aatgtgaaaa gagatttttc acaggagacc ttatacaaaa
     9961 aaatataaaa tacagctacc ggttgccaaa gacactataa gcctggcaaa aaatattaca
    10021 caacataaat gctaattgtt tatgcgggct ttgtattgct ttctgtatcc tacaaatgag
    10081 tgaaatttat gaaaaaggct aaaatacttt ctggcgtatt attactgtgc ttttcgtccc
    10141 cattaatttc tcaggctgcg acactggacg tacgtggtgg atatcgtagt ggaagccacg
    10201 cctatgagac tcgactcaaa gtcagtgagg gatggcaaaa tggatggtgg gcaagcatgg
    10261 aaagtaatac ctggaatacc attcatgata ataaaaagga aaatgccgca ctcaatgatg
    10321 ttcaggttga agttaattac gcgattaaac ttgatgatca atggacggtg cgcccgggaa
    10381 tgttaacgca ttttagcagc aacggcacac gctacggacc ctacgtaaaa ctgtcctggg
    10441 acgcgacaaa agatcttaat tttggcattc gctatcgtta cgactggaaa gcttaccgac
    10501 aacaagactt atccagtgat atgtctcgtg ataacgttca tcgttgggat ggatatgtca
    10561 cttaccatat taatagtgat ttcaccttcg catggcaaac gacgctatac agcaaacaga
    10621 acgattatcg ctatgcaaac cataagaaat gggcgacgga aaatgcattt gttctacaat
    10681 accatatgac gcccgatatt acgccataca tagaatatga ctaccttgac cgtcagggtg
    10741 tttacaacgg cagagataat ttatcggaaa acagttatcg cattggtgtg tcatttaaac
    10801 tgtagtagac aggagacagt cacaatgaat aaaacaataa cggcgcttgc tatcatgatg
    10861 gcttcatttg ccgcaaacgc gtctgtatta ccggaaactc ctgtgccatt taaaagtggt
    10921 accggagcaa ttgataacga cactgtctac attggtttag gtagcgcagg tacggcatgg
    10981 tacaagctgg atacacaggc caaagataaa aaatggacag cgttagctgc attccctggt
    11041 ggaccaagag atcaagcaac ctctgcattt attgatggca atctgtatgt gtttggcggc
    11101 attggcaaaa acagagaggg cttgactcag gtatttaatg acgtacacaa atacaacccc
    11161 aaaaccaata gctgggttaa attgatgtcg cacgcaccga tgggcatggc gggtcatgtg
    11221 acttttgtac acaacggcaa ggcttatgtt actggcggtg ttaaccagaa tatcttcaat
    11281 ggctattttg aagatctcaa cgaggctgga aaagattcaa ccgctgtaga taaaatcaat
    11341 gcctactatt ttgacaaaaa agcagaagat tatttcttca ataagtttct gttgtctttt
    11401 gatccctcaa cacagcaatg gagttacgct ggcgaatcgc cctggtacgg aacggctggt
    11461 gcggcggttg tgaataaagg tgataaaacc tggcttatta atggcgaagc caaacccgga
    11521 ttgcgaacgg atgccgtatt tgaacttgat ttcaccggta ataatttaaa atggaataag
    11581 cttgctcccg tctcatcacc agatggcgtc gctggcggtt ttgcggggat aagcaatgat
    11641 tctcttatat ttgccggagg ggccggattc aaaggttcac gagaaaatta ccagcacgga
    11701 aagaactatg cgcatgaagg cctgaaaaaa tcatatagca ctgatattca tctttggcat
    11761 aacgggaaat gggataaatc gggtgaatta tcgcaaggtc gggcctacgg agtatcattg
    11821 ccctggaata atagtctatt gattattggc ggtgaaactg caggcggcaa agcggtgacg
    11881 gattcagttt tgatctctgt gaaggataat aaagtcacag tacaaaacta acgcttcagg
    11941 gccccagtaa aggggccctg ctatcaattt atcatttcaa ttacgcgaaa attatatgga
    12001 cgcaataata tcgcccgatt attactatgt tcttaccatt gctggtcagt ctaatgctat
    12061 ggcgtatggc gaaggactgc cattaccggc cagggaagat gcgcctcatc ccagaattaa
    12121 acaattagcg agatttgcgc atacgcatcc cggaggcccg tcatgtcact ttaacgacat
    12181 tattccacta actcactgcc cacacgatgt tcaggatatg cagggttatc accatcctct
    12241 ggcaacgaat catcaaacac agtacggcac cgttggccag gcactgcata ttgcacggaa
    12301 attactgtcc tttattcctg ataacgcagg ggttctcatc gttccgtgtt gccgtggcgg
    12361 atcggctttt accgcgggca gcgaagggac atattcagaa cggcacggag ccagccatga
    12421 tgcttgtcgt tggggaacgg atactccgct ataccaggat ttagtcagca gaacgcgagc
    12481 cgcactggca aaaaatccgc agaacaaatt cctcggcgta tgctggatgc aaggcgaatt
    12541 tgacttaatg accagtgact acgcgtcaca ccctcaacac tttaatcata tggttgaagc
    12601 ctttcgtagg gatctaaaac aataccattc tcagcttaat aatattactg acgcgccgtg
    12661 gttttgcggc gataccacct ggtactggaa agaaaatttc cctcatgcgt atgaagctat
    12721 ttatggcaat tatcaaaata atgttttagc taatattatt ttcgtcgact tccagcaaca
    12781 aggtgaaaga ggactgacga acgcgcctga tgaagacccg gacgatttaa tcatgggata
    12841 ttacggttca gcgtaccgct caccggagaa ctggacgacg gcactgcgaa gcagtcattt
    12901 cagcgcggca gcccgtcggg ggattatttc tgacaggttt gtagaagcaa ttttgcagtt
    12961 ttggcgcgga aagtgagcgt tcattaattt gatttattcg catccatcaa cgcttttaac
    13021 tcctccggcg taaacggtgg tttgcgtcgg tgcaacatcg catggcaatt agggcacaca
    13081 agcagcaaaa aaacaaatga gatcaaggta atatatcttc acttgcaggc ttgaacagca
    13141 gaaaatttgc gagcatgatc gcaattattt cactgctagg gatatcaatg gcttccagta
    13201 aatcgctaca gcaggcaatt gccaatataa aaatctggca taagggtgaa cagcgcgcac
    13261 cgcataaacc attgttattg ctatacgtat tagcgggata cctgaatgga catccacgcc
    13321 ttttcgatta tggatcggaa atctacgaac ctctgcacag tttactggaa cgttttgggc
    13381 cacagcgttc acagtaccga cctgatatgc cgttctggcg attacaaggc gacggattct
    13441 ggcaattaca caatgccgag ctttgctcaa cagcagggag cagccgacaa ccgccagtga
    13501 aggaactgaa cgaataccac gttgcaggcg gtttcgatga acagcactac gccctggtaa
    13561 ccggcaataa aaaactcatc aatactctag cgcaacagat actcgaagcg cacttcaccg
    13621 agagtattca ggaagaaatt gctgacgagc tgggttttga tctccagcaa atccgtaaac
    13681 agcgcgaccc gttatttcgc aaaaatgtat tacgcgctta taactaccag tgcgcgatat
    13741 gtggctttaa tatgcgccac gacgacacca ccgtcgcgct ggaagcggcg catataaaat
    13801 ggaaacagca cggcggtcct tgtgaaattc ctaatggcct ggcgctttgc gcaattcacc
    13861 ataaagcctt tgataaagga tcgattggcc tggacgaaaa tatgcgggta ctggtatcag
    13921 atgcagtaaa cggcggaggg agcgttgaga gattattctg ggattttgac gggaaaatta
    13981 ttgcgttgcc gcaggtgcgt aaaaattacc cttatgaggg gtttgtggag tggcatcgga
    14041 atgaggtttt tagggggtga ggttgataac tatcgcagta tgttcaatat tgctgacata
    14101 atcagtgcag gatcttgccg ctagtttaca actcgccttc gatagcggcg caaaacgagt
    14161 tctgttgccg atatcctggg ctatggatat tccaacagtt ccggcagagt tgtttaccaa
    14221 gtttcaggta agtttttact cagaaccggt tgatgcggtt tataaggcgc tggatgtgaa
    14281 ttaacacatt cctcagctta tttacaaaag gattattccc atttgatata atatcagtgc
    14341 caatttactt ttttcaatgg aatatatctc ggctaaataa caataaaact tatcgctaat
    14401 ggattaaata aacaattttc taattcattt cacggtaatg actccaactt actgatagtg
    14461 ttttatgttc agataatgcc cgatgacctt gtcatgcagc tc
//
LOCUS       DAJVSY010000104        14222 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.104, whole genome shotgun sequence.
ACCESSION   DAJVSY010000104 DAJVSY010000000
VERSION     DAJVSY010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14222)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14222)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14222
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.104"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            505..1329
                     /gene="gadX"
                     /locus_tag="OQQ19_002808"
     CDS             505..1329
                     /gene="gadX"
                     /locus_tag="OQQ19_002808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadX"
                     /protein_id="HCS1804369.1"
                     /translation="MQSLHGNCLIAYARHKYILTMVNGEYRYFNGGDLVFADASQIRV
                     DKCVENFVLVSRDTLSLFLPMLKEEALNLHAHKKISSLLVHHCSRDIPVFQEVAQLSQ
                     NKNLRYAEMLRKRALIFALLSVFLEDEHFIPLLLNVLQPNMRTRVCTVINNNIAHEWT
                     LARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGY
                     HSVSYFIYVFRNYYGMTPTEYQERSAQGLPNRDSAASIVAQGNFYGTDRSAEGIRL"
     gene            1697..2425
                     /gene="gadW"
                     /locus_tag="OQQ19_002809"
     CDS             1697..2425
                     /gene="gadW"
                     /locus_tag="OQQ19_002809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadW"
                     /protein_id="HCS1804370.1"
                     /translation="MTHVCSVILIRRSFDIYHEQHKISLHNESIVLLEKNLADDFAFC
                     SPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESG
                     VNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAE
                     RMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYF
                     INTFRQYYGVTPHQFAQHSLGTFS"
     gene            complement(2788..5901)
                     /locus_tag="OQQ19_002810"
     CDS             complement(2788..5901)
                     /locus_tag="OQQ19_002810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HCS1804371.1"
                     /translation="MANYFIDRPVFAWVLAIIMMLAGGLAIMNLPVAQYPQIAPPTIT
                     VSATYPGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDI
                     AQVQVQNKLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVAS
                     NIKDPLSRTAGVGSVQLFGSEYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQ
                     LGGMPQAADQQLNASIIVQTRLQTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDYS
                     TVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIE
                     ISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLS
                     AVFMPMAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATILKAAPEGGHKPN
                     ALFARFNTLFEKSTQHYTDSTRSLLRCTGRYMVVYLLICAGMAVLFLRTPTSFLPEED
                     QGVFMTTAQLPSGATMVNTTKVLQQVTDYYLTKEKDNVQSVFTVGGFGFSGQGQNNGL
                     AFISLKPWSERVGEENSVTAIIQRAMIALSSINKAVVFPFNLPAVAELGTASGFDMEL
                     LDNGNLGHEKLTQARNELLSLAAQSPDQVTGVRPNGLEDTPMFKVNVNAAKAEAMGVA
                     LSDINQTISTAFGSSYVNDFLNQGRVKKVYVQAGTPFRMLPDNINQWYVRNASGTMAP
                     LSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLPAGVGYS
                     WTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGALLAT
                     DLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEGKTPIGAIIEAARMRLRP
                     ILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIYFVPVFFVVVEHL
                     FARFKKA"
     gene            complement(5926..7083)
                     /gene="mdtE"
                     /locus_tag="OQQ19_002811"
     CDS             complement(5926..7083)
                     /gene="mdtE"
                     /locus_tag="OQQ19_002811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter subunit MdtE"
                     /protein_id="HCS1804372.1"
                     /translation="MNRRRKLLIPLLFCGAMLTACDDKSAENAAAMTPEVGVVTLSPG
                     SVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELN
                     SAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAV
                     EQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQD
                     FLRMKEEVASGQIKQVQGSTPVQLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIF
                     PNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGKATALILDKDDVVQLREIE
                     ASKAIGDQWVVTSGLQAVDRVIVSGLQRIRPGIKARAISSSQENASTESKQ"
     gene            7143..7421
                     /locus_tag="OQQ19_002812"
     CDS             7143..7421
                     /locus_tag="OQQ19_002812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804373.1"
                     /translation="MRDLQTSGIVGLSASKVGYRHSDRHGEVNDKKNVAVLPTVPASI
                     RATKGSTGGYTYQGNKVVLASPLVITGGNEISICIPRHASHQFQLLMS"
     gene            complement(7422..7949)
                     /gene="gadE"
                     /locus_tag="OQQ19_002813"
     CDS             complement(7422..7949)
                     /gene="gadE"
                     /locus_tag="OQQ19_002813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadE"
                     /protein_id="HCS1804374.1"
                     /translation="MIFLMTKDSFLLQGFWQLKDNHEMIKINSLSEIKKVGNKPFKVI
                     IDTYHNHILDEEAIKFLEKLDAERIIVLAPYHISKLKAKAPIYFVSRKESIKNLLEIT
                     YGKHLPHKNSQLCFSHNQFKIMQLILKNKNESNITLTLNISQQTLKIQKFNIMYKLKL
                     RRMSDIVTLGITSYF"
     gene            complement(8748..9320)
                     /gene="hdeD"
                     /locus_tag="OQQ19_002814"
     CDS             complement(8748..9320)
                     /gene="hdeD"
                     /locus_tag="OQQ19_002814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-resistance protein HdeD"
                     /protein_id="HCS1804375.1"
                     /translation="MLYIDKATILKFDLEMLKKHRRAIQFIAVLLFIVGLLCISFPFV
                     SGDILSTVVGALLICSGIALIVGLFSNRSHNFWPVLSGFLVAVAYLLIGYFFIRAPEL
                     GIFAIAAFIAGLFCVAGVIRLMSWYRQRSMKGSWLQLVIGVLDIVIAWIFLGATPMVS
                     VTLVSTLVGIELIFSAASLFSFASLFVKQQ"
     gene            9575..9907
                     /gene="hdeA"
                     /locus_tag="OQQ19_002815"
     CDS             9575..9907
                     /gene="hdeA"
                     /locus_tag="OQQ19_002815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-activated periplasmic chaperone HdeA"
                     /protein_id="HCS1804376.1"
                     /translation="MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLA
                     VDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE
                     WDKIKKDM"
     gene            10023..10349
                     /gene="hdeB"
                     /locus_tag="OQQ19_002816"
     CDS             10023..10349
                     /gene="hdeB"
                     /locus_tag="OQQ19_002816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-activated periplasmic chaperone HdeB"
                     /protein_id="HCS1804377.1"
                     /translation="MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFID
                     LNPKAMTPVAWWMLHEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQA
                     SNDLPN"
     gene            10413..11060
                     /locus_tag="OQQ19_002817"
                     /pseudo
     CDS             10413..11060
                     /locus_tag="OQQ19_002817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417965.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MgtC/SapB family protein"
     gene            complement(11102..11632)
                     /locus_tag="OQQ19_002818"
     CDS             complement(11102..11632)
                     /locus_tag="OQQ19_002818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1804378.1"
                     /translation="MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDGMLHQNAFVI
                     IDTLMNNVFHSNFLTQIERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALI
                     NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKITLKTFYCHKHNIMMILNL
                     KRINELVRHQHIDYLV"
     gene            complement(11788..12354)
                     /gene="slp"
                     /locus_tag="OQQ19_002819"
     CDS             complement(11788..12354)
                     /gene="slp"
                     /locus_tag="OQQ19_002819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312404.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein Slp"
                     /protein_id="HCS1804379.1"
                     /translation="MNMTKGALILSLSFLLAACSSIPQNIKGNNQPDIQKSFVAVHNQ
                     PGLYVGQQARFGGKVINVINGKTDTLLEIAVLPLDSYAKPDIEANYQGRLLARQSGFL
                     DPVNYRNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREVVNTTYNLWDYG
                     YGAFWPEPGWGAPYYTNAVSQVTPELVK"
     gene            complement(12709..13826)
                     /locus_tag="OQQ19_002820"
                     /pseudo
     CDS             complement(12709..13826)
                     /locus_tag="OQQ19_002820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312403.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         3947 a         3019 c         3155 g         4101 t
ORIGIN      
        1 attatgtgtc gtcgcggctt cgaaatggac tttgctgaac tgttgctgga agactacaaa
       61 gcctccctga aatatctcag cgatcacccg aaactgcagg gtattgccca gcagaacagc
      121 tttaaacaca cctgataaca taacgttgta aaaaccgaat gcccagcctt taaaaaaaca
      181 gctgggcatt cggttgctta ttaatcgcaa taatatattg gctgtctatt catcgtgttg
      241 ataagatata tgttatatga atgtttatta aatgtagcga ttgcctttaa tgtcacgaaa
      301 agggattatt tgcttgctat taatttcact gcgttcttaa acgcgttttt gtattataaa
      361 tccagtcatc ctgcccgtag aacatcacac attatcatcc tgttctcccg cttcgtttaa
      421 atttatttat caatcaattt gacttaagag ggcggcgtgc tacattaatt aacagtaata
      481 tgtttatgta atattaagtc aactatgcaa tcattacatg ggaattgtct aattgcgtac
      541 gcaagacata aatatattct caccatggtt aatggtgaat atcgctattt taatggtggt
      601 gacctggttt ttgcggatgc aagccaaatt cgagtagata agtgtgttga aaattttgta
      661 ttagtatcaa gggatacgct ttcattattt ctgccgatgc tcaaggagga ggcattaaat
      721 cttcatgcac ataaaaaaat ttcttcatta ctcgttcatc actgtagcag agatattcct
      781 gtttttcagg aagttgcgca actatcgcag aataagaatc ttcgctatgc agaaatgcta
      841 cgtaaaagag cattaatctt tgcgttgtta tctgtttttc ttgaggatga gcactttata
      901 ccgctgcttt tgaacgtttt gcaaccgaac atgcgaacaa gagtttgtac ggttatcaat
      961 aataatatcg cccatgagtg gacactagcc cgaatcgcca gcgagctgtt gatgagtcca
     1021 agcctgttaa agaaaaaatt gcgcgaagaa gagacatcat attcacagtt gcttactgag
     1081 tgtagaatgc aacgtgcttt gcaacttatt gttatacatg gcttttcaat taagcgagtc
     1141 gcagtgtcct gtggatatca cagcgtgtcg tatttcattt acgtctttcg aaattattat
     1201 gggatgacgc ccacagagta tcaggagcga tcggcgcagg gattgccgaa ccgtgactcg
     1261 gcggcaagta ttgttgcgca aggaaatttt tacggcactg accgttctgc ggaaggaata
     1321 agattataga attttactca gacataaaaa aaacctggca taggggaccg ggaagaggat
     1381 agtctgccgt ctccagacta ataaaccgct ataacactcc ctgttggcac gggaaacttt
     1441 gtgctctcag taagttaaat ataactttta ctggaaataa gatcagccat ttttttataa
     1501 acataagcta tacgctgtgc gaaaatatat tcgtgctgca tttacttatt atcaattaac
     1561 tgttatgcaa aactactttg tggataaatt ttggtcctgc caaatctggc agtttttgcg
     1621 ctaagaaaca gtctggcaac atttcattag tatactgaaa ttgaaataat cgcagtatga
     1681 aatataaggg ataatcatga ctcatgtctg ctcggtgatc ctcattcgtc gttcattcga
     1741 tatttatcat gaacagcata aaatatcgct gcataacgag agtatcgtgc tgctggagaa
     1801 aaatttggca gacgattttg cgttttgttc accggatacg cgacgactgg atatcgatga
     1861 gctgacagtt tgccattact tacaaaatat tcgtcagcta ccacgcaatt tagggttaca
     1921 tagcaaagac cgtctattaa ttaaccagtc accccccatg ccgctggtga cggcgatttt
     1981 tgatagcttc aatgaatccg gggtaaattc accgatactg agcaatatgc tctacctttc
     2041 ctgtttatcg atgttttctc ataagaaaga actgatcccc ttacttttca atagcatcag
     2101 cactgtttca ggaaaagttg aacgccttat tagctttgat atcgccaaac gttggtatct
     2161 gcgcgatatc gcggaaagaa tgtataccag cgagagtctc atcaaaaaaa agttgcagga
     2221 tgaaaatacc tgtttcagta aaatattact cgcttccagg atgtcgatgg ccagacgatt
     2281 actcgagtta cgtcaaattc ctctgcatac tattgcagaa aaatgtggct atagcagtac
     2341 gtcgtacttt ataaacacat ttcgacaata ttatggtgta acgccacatc agtttgcgca
     2401 acattcgcta ggtacctttt cctgacatat tttgcatttg aatattggtc aggatctcac
     2461 acctgcttca tgtgaaactc ttccctgatg atttctgccg ggctaccggc tagttctctt
     2521 tcgcagtttg ccaggcggta taggtatttt caggaggaaa agactcggca tgtttgggat
     2581 tattaagctg acaattcata cgattacggg aatgtgggtc agtattgtgc tgttcaaatt
     2641 gatgacgaat ggctggagtg gtttctactt tcagtgctgt gtactaagcc tggtattcct
     2701 gacggttagc tggttgttga gtggtgaatg gttagcagga aagagtaagg ctgaaccttc
     2761 acgttcaacc ttactctcat ttacacgtta cgctttttta aagcgggcaa agagatgttc
     2821 cactacaacg aaaaagaccg gaacgaagta aattgccagc actgttgcgg caaacatccc
     2881 gcccatcacg ccggtaccta ccgcgttttg cgcgccagaa ccggcaccat gactgataac
     2941 cagcggcagc acgccgagaa taaaggccag agaggtcatc aggattgggc gtaaacgcat
     3001 ccgcgccgct tcgatgattg cccctatcgg cgttttccct tctttctgca tcatctcaac
     3061 ggcaaattcg acaatcagga tggcgttctt ggcggaaagc ccgatggtgg tcagcaaacc
     3121 aacctggaag tagacgtcat tacttaagcc gcgcagatcg gtggccagta atgcgccaac
     3181 gacgcctaac ggaacaacca acatcaccga gaacggaatt gaccagctct catagagtgc
     3241 ggcgagggcg aggaacacca cgaccagtga aatggcatac agtgcaggag cctggtttga
     3301 ggataacgct tcctgatacg acagtccggt ccatgagtag ccgacgcctg ccggaagttt
     3361 agcgaccagg tctgccataa atttcatagc gtcaccggta cttttcccgg ccgccgcttc
     3421 acctaaaatc tccattgacg ggatgccgtt gtagcgttcc aatcgcggtg aaccataggt
     3481 ccattcggta gacgagtagg cagaaagcgg tgccatcgtg ccagaggcgt tgcgtacata
     3541 ccattggttg atgttatccg gcaacatacg gaacggcgtg cctgcctgga catacacttt
     3601 tttcacccgc ccctggttga ggaagtcgtt cacgtagctg ctgccgaagg cggtggaaat
     3661 tgtctggttg atatcagaca gcgccacacc cattgcctca gctttcgcgg cgttgacgtt
     3721 cactttgaac atcggcgtat cttccaggcc gttcgggcgt accccggtga cctggtcagg
     3781 cgattgcgct gccagtgata acagctcgtt tcgtgcctgg gttagttttt cgtgccccag
     3841 gttaccgttg tccagcagtt ccatatcaaa acctgacgcg gtacccagtt cagccaccgc
     3901 gggtaagttg aacgggaaga cgacggcttt attgatactg cttaacgcaa tcattgcccg
     3961 ctgaatgatc gcggtaaccg agttttcctc accgacacgt tcagaccacg gcttgagact
     4021 gataaacgcc aggccgttgt tttgcccctg gccgctgaag ccaaagccgc caacggtaaa
     4081 caccgactga acattatctt tctcttttgt aagataataa tccgtcacct gttgcagcac
     4141 tttcgtggtg ttaaccatgg tggcaccgga aggtaactgc gcggtggtca taaatacccc
     4201 ctgatcctct tctggtaaga aagaggtcgg tgtacgcagg aacagcaccg ccatcccggc
     4261 gcaaatcagc aggtagacca ccatgtagcg accggtacaa cgcaacagcg agcgggtgct
     4321 atcggtatag tgctgagttg atttttcaaa cagcgtgttg aagcgtgcga acagggcgtt
     4381 aggtttgtga ccgccttccg gcgcggcttt cagaatggtg gcgcacaggg caggggtcag
     4441 gctcattgcc acaaatactg aaagcagcat ggaggagatc agcgtgatgg agaactggcg
     4501 gtagatctcc ccggttgcgc cgctcataaa ggccatcggc ataaacactg cggaaagaac
     4561 aacagcaata ccgaccagcg cacgttggat ctgccccatc gatttatgcg tcgcttcctt
     4621 cggtggtagc ttatcttccg caatgacacg ctcgacgttc tccaccacca cgatggcgtc
     4681 atccaccagt aaccctatcg ccagcaccat cccgaacata gttaacgtgt tgatggtgaa
     4741 accgaccgcc gacaagatcg caaacgtccc gagaataacc accggtacgg caatcgtcgg
     4801 gatgattgtg gcacggaaat tctgcaaaaa cagatacatg accaggaaga cgaggatgat
     4861 agcctcaacc agtgttttaa aaacttcctg aatagaaatt tcgataaacg gcgtggtgtc
     4921 gtaaggataa accgtcttca gacttgcggg gaaataggct gataagcggt tcagctcctc
     4981 tttgactgcc cgcgaggtat ccagggcgtt tgctccggta gccagtttga tggcgatccc
     5041 ggcagcaggt ttgccgttat agcgcgccac ggtggaataa tcttccgctc caagttcgac
     5101 gcgggcgaca tcacgcagca gcacttgcga accatcttgc tgaactttca acaggatttt
     5161 gccaaattct tccggcgttt gcagacgcgt ctgcacaatg atcgaggcgt ttagttgctg
     5221 gtctgccgcc tgtggcatgc cacccagttg accaccggaa atctggttgt tttgcacctt
     5281 aatctgggaa ataacatcgg aaggtaccag attgtattta ttgagttttt gcgggtccag
     5341 ccagatacgc atggcgtact cggaaccaaa gagctgtacg ctaccaacgc ccgcggtacg
     5401 gcttagcggg tctttgatat tagacgctac atagtccgcg atatcgtact ggttgaggct
     5461 gccgttatca gaaataaacg ccgctaccat cagaatatta ctgctcgact tatcaacgct
     5521 aatcccctgc tgctgcaccg cttcaggtaa tgaaggcata gcgagttgca gtttattttg
     5581 cacctgaacc tgtgcgatat caggagatgt cccagtctcg aaggtcagag tgatagaggc
     5641 attacccgcc gcatcactgg ttgaagacat gtacatcagg ccatcaagcc cattcatatt
     5701 ttgctcaatc acctgagtga ccgagtcttc taccgtttgc gcatcggcac ctggataggt
     5761 agcgctgacg gtaatggtcg gtggcgcaat ctgcggatac tgcgcaaccg gtaagttcat
     5821 gatcgccaga ccacctgcaa gcatcataat aatggcaagt acccaggcaa aaaccgggcg
     5881 atcaataaaa tagttagcca tgaaagtccc cttaagcctg caacgttatt gtttcgattc
     5941 ggtgctggcg ttttcctggc tggaggaaat tgctcgtgct ttgatacccg gacgaatgcg
     6001 ttgcaaaccg gaaacgatca cccgatcgac agcctgcaag ccagaggtga caacccactg
     6061 gtcgccgatg gctttgctgg cttcaatttc gcgtagctgc acaacatcgt ctttatccag
     6121 aatgagcgcc gttgctttac cctgggcgtt gtgggtgacg ccttcctgcg gcaccagtaa
     6181 tacattctgg cggctacctt catccactaa tgccgtgacg tacatgccag gcagcaagtc
     6241 accatttggg ttggggaaaa tcgcccgtaa cgtcacggag cccgtggttt catccaccgt
     6301 cgggtcggag aatttcagtg tgccggtctg gctgtagcgt ttaccatttt ccagattgag
     6361 ctgtactggc gtactgccct gaacctgttt gatttgccca ctggcgacct cttctttcat
     6421 gcgcaagaaa tcctgcaccg actgcgtgag atcgacataa atcgggtcca gacgttgtac
     6481 ggtaaccagc gaatctgcct gattagcggt aacgagtgcg ccgacggtca ccgacgattt
     6541 cccgctgacg cccgtaatcg gcgaggtgac attcgcgtat tgcagattga tcgtcgcctg
     6601 ttcaacagcc gctttggcga cggtgacatt ggcttctgct tcattcagct gggtgcgcgc
     6661 ggtgtcgtaa tcctgacggc taacgtagtt ggtcttcagc aacgatgcct ggcggttaaa
     6721 ggtgatgcgg gcattgctgg cggtagagag cgctttcgcc agcgagcctt tggcggagtt
     6781 tagctcggcc tgtaaaggtg caggatcaat ctgatacagc gaatcgccct ggttcacttt
     6841 atcgccttcg ataaagttgc gtttaatgat aataccgccc acctggggac gtatctcggc
     6901 aacttcataa ggaacggttc taccgggcaa ttcgctcaac acattgaccg aaccggggga
     6961 gagtgtgacg acaccgacct caggcgtcat ggcggcggcg ttttccgccg atttgtcatc
     7021 gcaggcggtg agcatcgcgc cgcagaataa caacggtatt aacagctttc ttcttctgtt
     7081 cattttagtc cctgaaaatt cttgagaaat aacggttctt taaattgcgc gcgaggagag
     7141 atatgaggga tttacagacc agcggcatag tggggttgtc agccagtaag gtgggataca
     7201 ggcacagtga tcgacatggt gaggtcaacg acaaaaaaaa tgttgccgtt ctgccaacag
     7261 ttcctgccag cattcgggca acgaagggtt ctactggtgg atacacatac caggggaata
     7321 aagtcgtttt agcctctcct ttagtaatca ccgggggtaa tgaaatcagc atctgcatcc
     7381 ctcgtcatgc cagccatcaa tttcagttgc ttatgtcctg actaaaaata agatgtgata
     7441 cccagggtga cgatgtcgct catacgtctt agtttcaact tgtacataat gttgaatttc
     7501 tgaatcttta atgtttgttg cgaaatattg agcgtcaacg tgatattgct ttcattttta
     7561 tttttcagaa tcagttgcat aattttgaac tgattatgtg aaaaacataa ttgtgaattc
     7621 ttatggggca agtgtttacc ataagtaatc tcaagaagat ttttgatact ttctttgcgg
     7681 ctaacaaaat aaataggcgc tttagctttt agtttactga tgtgataagg tgccaaaaca
     7741 ataattctct cggcatctaa tttctccaga aatttaatcg cttcttcatc aaggatatga
     7801 ttgtgatagg tatcaatgat aaccttgaag ggtttattgc ctactttttt gatctctgac
     7861 agggaattga tttttatcat ttcgtgatta tctttcaact gccaaaagcc ctgtaaaaga
     7921 aaagaatctt tcgtcatgag aaaaatcata acttgctcct tagccgttat cgtttcgaac
     7981 atgtcatcct tttcattatt tacatccttg tccgaatcgt tgttcaatat agtaaacgcc
     8041 tataagaact ttacccttcg tgaactaata cgtctattaa cactaatcaa tacttcagat
     8101 ttatccatca cgcactccat atattgatcc taagtaagat tcctggttgt tatcagcttg
     8161 taaatagtaa acaaaaagtt aacgtttgcg gattactgcc caagaataag ttatcaataa
     8221 ccagtttgtg atctctgaag aatattacta aagttaaaat gtaatccgat ttaaatatcg
     8281 agtctccttg tttcgactta agctggcaat tggattgcca gctttctttt aacgcattga
     8341 aattacctga gtaaataacg cattcatgtc ttcaggtttt tatatagcgt ctggagacac
     8401 ggatatttat gcaatgtaat caacgccagt tgcaaaaaaa tgaacccgga ttacttattt
     8461 aaccgcccat agcatcaacg cttacggaac tctttgttca ctttcccaca gcacttttaa
     8521 aacattaaac ctgactacgg aaaatatcag ccatgataat gtttgaaatg gctaatttgc
     8581 catggagtga aaaaaattag atgaaattca gtaggttgaa ataatcacta gcaggtaatt
     8641 atttcaatga tagtgcgcaa ttgatctaca acactgcgta gcggagagag tattaatcgg
     8701 atcatagtca catcaagtga ctatgatccg ggtgacaacc ggggtaatta ttgctgctta
     8761 acgaacaaac tggcgaagct gaacaggctg gcggcgctaa atatcagttc aattcccacc
     8821 agtgtggaaa ccagcgttac agacaccatc ggcgttgcac caaggaatat ccaggcaatg
     8881 acgatatcca gcacaccaat aacgagctgt agccagctgc ctttcattga acgctgacga
     8941 taccaactca tcaggcgaat aacccctgca acacagaaca aaccggcaat aaatgccgca
     9001 atggcaaaaa tgcccagctc cggtgcgcgg atgaagaaat agccgatcaa taaataggcg
     9061 actgcgacga ggaaaccgga taataccggc cagaaattat gactgcggtt gctgaataac
     9121 ccgacaataa gcgcaatacc cgagcagatt aataatgcac ccactactgt gcttaaaata
     9181 tcgccagaga cgaacgggaa actgatacac agcaacccga cgataaacag cagcacggca
     9241 ataaactgga ttgctctgcg atgtttttta agcatctcca gatcaaactt caaaattgtt
     9301 gccttatcta tatataacat agaaccaccc tataaaatta agaagaaaat cccctgctat
     9361 caatctatgc caaaaacgcg tctaagaatg cagtcgattt aataaaaatt tcctaattgc
     9421 agtatctgat gcatctgtaa ctcattgtat tgaaataaaa atatctgatt ttgatatttt
     9481 ccatcaacat gacatataca gaaaaccagg ttataacctc agtgtcgaaa ttgatttgtg
     9541 acggctcttt cactttatag ttgaggatat tacgatgaaa aaagtattag gcgttattct
     9601 tggtggtctg cttcttctgc cagttgtgag caatgcagcg gatgcgcaaa aagcagctga
     9661 taacaaaaaa ccggtcaact cctggacctg tgaagatttc ctggctgtgg acgaatcctt
     9721 ccagccaact gcagttggtt ttgctgaagc gctgaacaac aaagataaac cagaagatgc
     9781 ggttttagat gttcagggta ttgcaaccgt aaccccagct atcgttcagg cttgtactca
     9841 ggataaacaa gccaacttta aagataaagt taaaggcgaa tgggacaaaa ttaagaaaga
     9901 tatgtaattc cgggaatgcg ttacatcgta cttccttgca tattgaacag gccggaatat
     9961 cttctttaaa agcagctatt cctcctgttc atatataatc tatatattga atgggttaca
    10021 aaatgaatat ttcatctctc cgtaaagcgt ttatttttat gggcgctgta gcggctttgt
    10081 cactggtgaa cgcacaatct gcgctggcag ccaatgaatc cgctaaagat atgacctgcc
    10141 aggaatttat tgatctgaat ccaaaagcaa tgaccccggt tgcatggtgg atgctgcatg
    10201 aagaaacagt atataaaggt ggcgataccg ttactttaaa tgaaaccgat ctcactcaaa
    10261 ttcctaaagt gatcgaatac tgtaagaaaa acccgcagaa aaatttgtat accttcaaaa
    10321 atcaagcatc taatgacttg ccgaattaat gaggtacaag taaaaaggag tagcaagttg
    10381 agccatcttg ctgctccttt ttgcattttt atatgacagc agaatttatt atacgtctta
    10441 tactcgcggc aattgcctgt ggcgctattg gcatggaaag gcaaatgtga ggcaaaggag
    10501 cagggttacg cacacatgta ttaattggca tgggaagcgc cctgtttatg attgtttcga
    10561 aatatggttt tgctgacgtg ctgtctttag atcacgtcgg actcgacccc agccgtattg
    10621 ctgctcaggt ggtgacgggc gtcgggttta tcggtgcagg taacattctc gttcgtaacc
    10681 aaaatattgt aggtttgacg acggcagcgg atatctggat gaccgccgct ataggtatgg
    10741 ttattggcag tggtatgtac gaattgggta tgtatggttc agtgatgacc ttgctggtgc
    10801 tggaagtctt ccatcaatta accttccgcc tgatgaacaa aaattaccat ttacagctga
    10861 cattagtgaa cggtaatacg gtatcaatgc tcgactggtt taagcagcaa aaaataaaaa
    10921 cggatttagt ttcgttgcag gaaaatgaag atcatgaagt ggtcgccatt gatatccagc
    10981 ttcatgccac aacgtcgata gaagatctgt tgcgattatt aaaaggtatg gcaggggtga
    11041 aaggcgtttc aattagctaa tctgtgtggc agcgtagtca gactcaccgt aagcctgaaa
    11101 ttcacaccag ataatcaata tgctgatggc gtaccagctc attgatccgc ttaagattga
    11161 ggatcatcat gatattgtgt ttatggcagt agaacgtttt tagcgttatt ttcagtttct
    11221 ccagaatatc ctccgttgtc atttgattcg caatgcagct cagaacctga tgttgcttgc
    11281 gcgaaagtga cacagccgct tcaggcacag agcagtaact gccattgatg agtgcgacaa
    11341 aatcgatgat agtgatagtc cgcggaacaa aggtcaccgg cactttcccc aggcagcgtt
    11401 taatattaaa gggggagaaa ataatcacat ggacaggttt taatcgttca atttgagtga
    11461 gaaaattaga atgaaataca ttattcatta atgtatcaat aatgacaaag gcattctgat
    11521 gcaacattcc gtcgatctct tcttcgttct gtatatgaac gacattacct ttgctcaaaa
    11581 tgtttttcat cgcggtgaag aacatcgtat ccctggtaat tataagaaac ataaccgact
    11641 cctggtgcgg acattaattt tataatcagt ttgccaaagg taattaacag gacagggctt
    11701 ataataataa tagttagctt gctgtgtatt aattttatgt aatgcacgat gcagatgctg
    11761 agaaagcatc tgcatctttc ggtggtgtta tttgaccagc tcaggtgtta cctgactcac
    11821 cgcattggtg tagtaaggcg caccccagcc cggttccggc cagaatgcac catagccgta
    11881 atcccatagg ttataggtgg tattaaccac ttctctcaaa tgccacacct ggatgccctg
    11941 catattcact tccaggaagt tatacgggac tttattgata aagccaggtt gttcaccctg
    12001 aatggtaccg aggatggtaa caaagtgatt acgatagttc actgggtcaa ggaagccgct
    12061 ttgtctggcg agcagtcggc cctgatagtt ggcttcaata tcaggtttcg catagctatc
    12121 caacggtaat acagcgattt ctaacaacgt atccgttttg ccattgataa cgttgataac
    12181 cttcccacca aagcgcgctt gttgaccaac atataacccc ggctggttat gaacagcaac
    12241 aaaacttttt tgaatatcag gttggttatt gcctttgata ttttgcggaa ttgaactaca
    12301 tgcggcaagc aaaaatgaaa ggctgaggat gagtgcacct tttgtcatgt tcatgttact
    12361 atccttatca acaaatatta aaaccataat agatatttct ttatagtttt catctgattc
    12421 tgaggcgata tgcctgatag taacgtaaac ctgtctgatg tttatatccc ttttgtttag
    12481 ttcaattcca ttgattttgg ggcgtggcat aagtatccat cgccccataa tataatcctt
    12541 tgttttaaaa ttacataaaa tctattttta ttcaataatt ataaagtgct aataatcaat
    12601 attatggtat tatattctga taatgatttg ataagcgaat tcttttgcca gatggtattt
    12661 ctatttccac cccataattt atatcttttt cattaggaag tggcctcttt aaataaggcg
    12721 tgtgtgacat tttttttggg ttaagcgtct cgaattgaaa tacttcgaac tgatattcag
    12781 acatttctgc ccatgtttga attttattgt atcgagagag tgtcgtagag gctttaactt
    12841 gcttataaca ttgtttttgg aattcttgct gatattttaa tatgtcattg tatgaaagat
    12901 tggttatcct ggcctctaaa aatttaatta ttgtcgaagc aatttccgct tttgctcgta
    12961 aaaagttgtc attaatggtt aataatgttg aaaataaacc ttcgatttgt ttgtcaagat
    13021 attgtccatc tttatataat ttgggggggt agggtgttct ttatgtaaaa aatagtgtca
    13081 cctaaatttg cgtcagtgaa atttatatta agtagatctt cgaaataaaa ccttgacaag
    13141 gttagaacga acccggaaag gttctgtcct gtcatattga aatcaataaa gttggttccg
    13201 gcaaagactt tcatcctgtt tttattttca ctgtgctcaa tatataactt cgtcattttt
    13261 tgatacaggc tttgaatatc ttttatatta gttggtaagt cagctcgttg ttcagcaata
    13321 aaattagtat ctgaaaacat ggtttggaca ctgaatgtta tgggtattcc ctcttctacg
    13381 ctaattttag ttatgattgc cttgtcgggt ttaggattag cgacaacaat gattcgacat
    13441 tcagcacttt tgtttttttc atatctaatg ttattaatct gattaagtat tgattgtgtc
    13501 tgttgcgtaa gtggtgtcga acttatcgtt tcaatgttat taataagact tacaagttga
    13561 accacaactt ttgagtagtc tgcatttgta tatgtggtgt tcgtgtggca tgcattaatt
    13621 tgttggagtt gttgttgcgc taaatcaaat tgttcagggt tgtatccttc tccagagaat
    13681 gtggaattaa tgggttgttg ttcttcccaa ttatcacaag gccacttcgg tgtgtctggc
    13741 gttttaacat tatcggtatt tgttgtgcag ttataaatat tgccgtgata tgtatttatt
    13801 atacctgggg taaagtcaat tgacataaca ttccttattc atcatctgtt ttatgctaag
    13861 gtttttaaat tggataatta gaacaggaat ggattttctt ctacacacaa taaatataat
    13921 gcgttatatc ttcctgatat aattaccttt aaattccctt tcatttccac ccggtaatat
    13981 ttgtgtataa aaaaagcagt gatagtatcg taaaggaaaa cgttaacaac tatcaaaaag
    14041 cgctcatttt aaaaagttat tatgttctcc gatagtgtgt gaagtaatat ttttgtgatg
    14101 ttttagatgt gtaataatga accaggttaa agtgtattta aaaatgtgtt gtattagcga
    14161 ctgaaatctg ccttttaaaa aggaggaggg tactgagaca aagagtcatt gcttctccga
    14221 ta
//
LOCUS       DAJVSY010000105        14109 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.105, whole genome shotgun sequence.
ACCESSION   DAJVSY010000105 DAJVSY010000000
VERSION     DAJVSY010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14109)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14109)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14109
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.105"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            220..1167
                     /locus_tag="OQQ19_002821"
     CDS             220..1167
                     /locus_tag="OQQ19_002821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001361319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HCS1804380.1"
                     /translation="MKNVLVTVPSFSARCVSASKLLRENNFNLIIKNNVEHLLKSEST
                     ALRESICAVIAGKDCYQADTLSLLPGVKIISRFGTGIDNIDLRAAQQSGIVVNNAVGI
                     NSNAVAEFIIGLIFASMRNIPGSYHAMQNGYWGESHGYELQGKRIGMVGYGNIGKTLA
                     KRLSGFDVELLAYDKQPDYQVADKVGVQFVSIEDIFMQSHVIIVLLPFSPELENFISH
                     KYLSMMRNGALIINAARGKLLDEGALLQVIEERNVFAALDVFSSEPLAQFSPLLHAKN
                     IITTPHIAAATVESYQQTGTHVAQSIIDYFAGREIKNVL"
     gene            complement(1246..1322)
                     /locus_tag="OQQ19_002822"
     tRNA            complement(1246..1322)
                     /locus_tag="OQQ19_002822"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1286..1288),aa:Met,seq:cat)
     gene            complement(1355..1431)
                     /locus_tag="OQQ19_002823"
     tRNA            complement(1355..1431)
                     /locus_tag="OQQ19_002823"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1395..1397),aa:Met,seq:cat)
     gene            complement(1465..1541)
                     /locus_tag="OQQ19_002824"
     tRNA            complement(1465..1541)
                     /locus_tag="OQQ19_002824"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1505..1507),aa:Met,seq:cat)
     gene            1750..2847
                     /gene="mltA"
                     /locus_tag="OQQ19_002825"
     CDS             1750..2847
                     /gene="mltA"
                     /locus_tag="OQQ19_002825"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008785702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HCS1804381.1"
                     /translation="MKGRWVKYLLMGTVVAMLAACSSKSTDRGQQYKDGKFTQPFSLV
                     NQPDAVGAPINAGDFAEQINHIRNSSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGI
                     DAWQMEGADNYGNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLPSRAEIYAGA
                     LGDKYILAYSNSLMDNFIMDVQGSGYIDFGDGSPLNFFSYAGKNGHAYRSIGKVLIDR
                     GEVKKEDMSMQAIRHWGETHSEAEVRELLEQNPSFVFFKPQSFAPVKGASAVPLVGRA
                     SVASDRSIIPPGTTLLAEVPLLDNNGKFNGQYELRLMVALDVGGAIKGQHFDIYQGIG
                     PEAGHRAGWYNHYGRVWVLKTAPGAGNVFSG"
     gene            2924..3730
                     /gene="tcdA"
                     /locus_tag="OQQ19_002826"
     CDS             2924..3730
                     /gene="tcdA"
                     /locus_tag="OQQ19_002826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HCS1804382.1"
                     /translation="MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSW
                     AAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRV
                     TVVDDFVTPDNVAQYMSAGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQID
                     PTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSIGKLGVDCVFSTEALVYPQSDGT
                     VCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARQG"
     gene            complement(3781..4224)
                     /gene="csdE"
                     /locus_tag="OQQ19_002827"
     CDS             complement(3781..4224)
                     /gene="csdE"
                     /locus_tag="OQQ19_002827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase sulfur acceptor subunit
                     CsdE"
                     /protein_id="HCS1804383.1"
                     /translation="MTNPQFAGHPFGTTVTAETLRNTFAPLTQWEDKYRQLIMLGKQL
                     PALPDELKAQAKEIAGCENRVWLGYTVAENGKMHFFGDSEGRIVLGLLAVLLTAVEGK
                     TAAELQAQSPLALFDELGLRGQLSASRSQGLNALSEAIIAAAKQV"
     gene            complement(4224..5429)
                     /gene="csdA"
                     /locus_tag="OQQ19_002828"
     CDS             complement(4224..5429)
                     /gene="csdA"
                     /locus_tag="OQQ19_002828"
                     /EC_number="3.13.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase CsdA"
                     /protein_id="HCS1804384.1"
                     /translation="MNVFNPAQFRAQFPALQDAGVYLDSAATALKPEAVVEATRQFYS
                     LSAGNVHRSQFAEAQRLTARYEAAREKVAQLLNAPDDKTIVWTRGTTESINMVAQCYA
                     RPRLQPGDEIIVSVAEHHANLVPWLMVAQQTGAKVVKLPLNAQRLPDVDLLPELITPR
                     SRILALSQMSNVTGGCPDLARAITFAHSAGMVVMVDGAQGAVHFPADVQQLDIDFYAF
                     SGHKLYGPTGIGVLYGKSELLEAMSPWLGGGKMIHEVSFDGFTTQSAPWKLEAGTPNV
                     AGVIGLSAALEWLADYDINQAENWSHSLATLAEDALAKRPGFRSFRCQDSSLLAFDFA
                     GVHHSDMVTLLAEYGIALRAGQHCAQPLLAELGVTGTLRASFAPYNTKSDVDALVNAV
                     DRALELLVD"
     gene            5621..5848
                     /locus_tag="OQQ19_002829"
     CDS             5621..5848
                     /locus_tag="OQQ19_002829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417289.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="HCS1804385.1"
                     /translation="MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTD
                     NDTGMISYKDANGNKQQINRTDVKEMVELDQ"
     gene            6199..7116
                     /gene="gcvA"
                     /locus_tag="OQQ19_002830"
     CDS             6199..7116
                     /gene="gcvA"
                     /locus_tag="OQQ19_002830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system transcriptional
                     regulator GcvA"
                     /protein_id="HCS1804386.1"
                     /translation="MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSL
                     EDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLP
                     SFAIHWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKL
                     YAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDWQTYTRQLGLNHINVQQGP
                     IFSHSAMVLQAAIHGQGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQA
                     ELGKIAAFRQWILAKAAAEQEKFRFRYEQ"
     gene            7135..7530
                     /locus_tag="OQQ19_002831"
     CDS             7135..7530
                     /locus_tag="OQQ19_002831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HCS1804387.1"
                     /translation="MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGL
                     EYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVT
                     PVGGVSFLAGWALMLVGAIRLKRKGVSHE"
     gene            7523..8623
                     /gene="rlmM"
                     /locus_tag="OQQ19_002832"
     CDS             7523..8623
                     /gene="rlmM"
                     /locus_tag="OQQ19_002832"
                     /EC_number="2.1.1.186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010435097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase
                     RlmM"
                     /protein_id="HCS1804388.1"
                     /translation="MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENSGYVIY
                     ECYQPDDGDKLIRELPFSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGE
                     LRVEVADTNESKELLKFCRKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYT
                     GYSYSNNNSPFYMGIPRLKFPAEAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDL
                     GACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVC
                     DMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINA
                     QIQARQLYHDREEVTVHVRRIWAAVGGRRDER"
     gene            complement(8667..9398)
                     /gene="fucR"
                     /locus_tag="OQQ19_002833"
     CDS             complement(8667..9398)
                     /gene="fucR"
                     /locus_tag="OQQ19_002833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose operon activator"
                     /protein_id="HCS1804389.1"
                     /translation="MKAARQQAIVDLLLNHTSLTTEALSEQLKVSKETIRRDLNELQT
                     QGKILRNHGRAKYIHRQNQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMVIALDAS
                     STCWYLARQLPDINIQVFTNSHPICYELGKRERIQLISSGGTLERKYGCYVNPSLISQ
                     LKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEA
                     RIGHLDEVTHIISDERQVATSLVTA"
     gene            complement(9456..9878)
                     /gene="fucU"
                     /locus_tag="OQQ19_002834"
     CDS             complement(9456..9878)
                     /gene="fucU"
                     /locus_tag="OQQ19_002834"
                     /EC_number="5.1.3.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose mutarotase"
                     /protein_id="HCS1804390.1"
                     /translation="MLKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIR
                     ADGLLVSDLLQAIIPLFELDSYAPPLVMMAAVEGDTLDPEVERRYRNALSLQAPCPDI
                     IRINRFAFYERAQKAFAIVITGERAKYGNILLKKGVTP"
     gene            complement(9880..11298)
                     /gene="fucK"
                     /locus_tag="OQQ19_002835"
     CDS             complement(9880..11298)
                     /gene="fucK"
                     /locus_tag="OQQ19_002835"
                     /EC_number="2.7.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417283.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculokinase"
                     /protein_id="HCS1804391.1"
                     /translation="MKQEVILVLDCGATNVRAIAVNRQGKIVARASTPNASDIAMENN
                     TWHQWSLDAILQRFADCCRQINSELTECHIRGIAVTTFGVDGALVDKQGNLLYPIISW
                     KCPRTAAVMDNIEQLISAQRLQAISGVGAFSFNTLYKLVWLKENHPQLLERTHAWFFI
                     SSLINHRLTGEFTTDITMAGTSQMLDIQQRDFSPQILQATGIPRRLFPRLVEAGEQIG
                     TLQNSAAAMLGLPVGIPVISAGHDTQFALFGAGADQNEPVLSSGTWEILMVRSAQVDT
                     SLLSQYAGSTCELDSQAGLYNPGMQWLASGVLEWVRKLFWTAETPWQMLIEEARLIAP
                     SADGVKMQCDLLSCQNAGWQGVTLNTTRGHFYRAALEGLTAQLQRNLQMLEKIGHFKA
                     SELLLVGGGSRNTLWNQIKANMLDIPVKVLDDAETTVAGAALFGWYGVGEFNSPEEAR
                     AQIHYQYRYFYPQTEPEFIEEV"
     gene            complement(11295..13040)
                     /gene="fucI"
                     /locus_tag="OQQ19_002836"
     CDS             complement(11295..13040)
                     /gene="fucI"
                     /locus_tag="OQQ19_002836"
                     /EC_number="5.3.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose isomerase"
                     /protein_id="HCS1804392.1"
                     /translation="MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEK
                     LRHACGAAVECVISDTCIAGMAEAAACEEKFSSQNVGLTITVTPCWCYGSETIDMDPT
                     RPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLL
                     RFARAGLAVASMKGKSYLSLGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRID
                     QKIYDEAELEMALAWADKNFRYGEDENNKQYQRNAEQSRAVLRESLLMAMCIRDMMQG
                     NSKLADIGRVEESLGYNAIAAGFQGQRHWTDQYPNGDTAEAILNSSFDWNGVREPFVV
                     ATENDSLNGVAMLMGHQLTGTAQVFADVRTYWSPEAIERVTGHKLDGLAEHGIIHLIN
                     SGSAALDGSCKQRDSEGNPTMKPHWEISQQEADACLAATEWCPAIHEYFRGGGYSSRF
                     LTEGGVPFTMTRVNIIKGLGPVLQIAEGWSVELPKDVHDILNKRTNSTWPTTWFAPRL
                     TGKGPFTDVYSVMANWGANHGVLTIGHVGADFITLASMLRIPVCMHNVEETKVYRPSA
                     WAAHGMDIEVLQERL"
     gene            complement(13073..>14109)
                     /gene="fucP"
                     /locus_tag="OQQ19_002837"
     CDS             complement(13073..>14109)
                     /gene="fucP"
                     /locus_tag="OQQ19_002837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HCS1804393.1"
                     /translation="ITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAA
                     NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQ
                     LSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRL
                     ARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGR
                     FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFS
                     LGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF
                     ARFRSQTATN"
BASE COUNT         3406 a         3472 c         3707 g         3524 t
ORIGIN      
        1 aggtttagca ccgtcatgct cgtctactgt tgttctggtt gttggtgatg cggtggcgct
       61 tgcactctct gaattgaaaa aatttactcg tgctgatttc ggcttatatc atccaggagg
      121 tgcactcggc attaaagcaa attcataatt tcaaagtata aatacagtga ccggtcacgc
      181 catcttttgg ggtggcgttc attgaagtga gtgtcagcta tgaaaaatgt tctggtcacc
      241 gtccccagct tttcagcacg ctgtgtttcc gccagcaagt tgctaagaga gaataatttt
      301 aatcttatta ttaagaataa tgtggagcat ctgcttaaat cagaatccac tgcattacga
      361 gaatctattt gcgcggtcat cgccggaaaa gattgttatc aggcggacac gctatcattg
      421 ctgcctggtg tgaaaataat atcgagattc gggacgggga tagataatat tgatcttcgt
      481 gcagcacaac aatccggtat tgtagtcaat aatgcggttg ggattaattc aaatgctgtc
      541 gcggaattta tcattggact tatcttcgcg agcatgagaa atattcccgg cagctatcat
      601 gcgatgcaaa atggctactg gggtgagtcg catggctatg aattacaagg caaacggatt
      661 ggcatggttg gctacggcaa tataggtaaa accctggcaa aaaggttatc cggttttgat
      721 gttgagcttt tagcttatga caaacaaccc gattatcagg ttgctgacaa agttggagtt
      781 cagtttgtat caattgaaga tatctttatg cagtcgcatg tcatcattgt tcttttgcct
      841 ttttctcctg agctggagaa cttcattagt cataaatatt tgtcgatgat gcgcaatggt
      901 gctctaatca tcaatgccgc aaggggaaag ttgctggatg agggcgcttt actacaggtg
      961 attgaagaac gaaatgtgtt tgcggcgctg gatgtgttta gctctgaacc gttggcgcaa
     1021 tttagcccac tgctacatgc caaaaatatc attacaacgc cgcatattgc ggccgccacc
     1081 gttgagtcat accagcaaac cggtacacac gttgcccagt cgataattga ttacttcgca
     1141 ggaagggaga taaaaaacgt gttgtgagtt cagcgaacga agtttttaaa tacaaaaaaa
     1201 ccgcaatttg tggaacacat tgcggtttat cagcattcta agtattggtt gcgggggccg
     1261 gatttgaacc gacgaccttc gggttatgag cccgacgagc taccaggctg ctccaccccg
     1321 cgtcaccgta ctgctttatt tcatcaaatt tgattggttg cgggggccgg atttgaaccg
     1381 acgaccttcg ggttatgagc ccgacgagct accaggctgc tccaccccgc gtcaccgtac
     1441 tgctttactt catcaaattt taattggttg cgggggccgg atttgaaccg acgaccttcg
     1501 ggttatgagc ccgacgagct accaggctgc tccaccccgc gtccgtggat gcgcactata
     1561 ctccgctcgc gttttcatgc aacctttttt ttaccccgat cacggattta gcatgatttt
     1621 gaacaaaaac aaaccactaa agcctatttt ttgtgcaaaa tttgcgtcag ggagaggctg
     1681 ctcatttcat taaacgcggc ggtttgttat cttcgttgcg ccttattttt taacctgaag
     1741 aagagaacaa tgaaaggacg ttgggtaaag taccttctta tgggcacggt tgtggcaatg
     1801 cttgccgcct gctcttccaa atcaaccgat cgcggacagc aatataaaga cgggaaattt
     1861 acccagcctt tctctctggt gaaccagcca gatgccgttg gcgcgccgat taacgccggt
     1921 gattttgccg agcaaattaa ccatatccgt aattcgtcac cgcgtctgta tggcaaccag
     1981 agtaatgttt ataacgcggt gcaagagtgg ctgcgcgcag gcggtgatac ccgcaatatg
     2041 cgccagttcg gcattgatgc ctggcagatg gaaggtgccg acaactatgg taacgtgcag
     2101 tttacaggct attacacgcc ggtaattcag gcgcgccata cccgccaggg cgagttccag
     2161 tatcctattt accgtatgcc gccaaaacgt ggtcgtctgc cgtctcgtgc ggagatctac
     2221 gcgggggcat tgggcgataa atacatcctc gcttacagca actctctgat ggataacttc
     2281 attatggatg tgcagggtag tgggtatatc gactttggtg atggcagtcc gcttaacttt
     2341 ttcagctatg cagggaaaaa cggtcatgcc tatcgcagca ttggtaaggt gctgatcgac
     2401 cgtggcgaag tgaaaaaaga agatatgtcg atgcaggcga ttcgtcattg gggcgaaaca
     2461 cacagtgaag ccgaggttcg cgagctgctg gaacagaacc cgtctttcgt cttctttaaa
     2521 ccgcaatctt ttgcaccggt gaaaggggca agtgcggtgc cgctggttgg ccgtgcttct
     2581 gttgcctccg atcgttcaat tattccgcca ggtactacct tgctggcaga agtgccgctg
     2641 ctggataata acggcaaatt taacggtcag tacgaattgc gtctgatggt ggcgctggat
     2701 gtcggtggcg caatcaaagg ccaacacttc gatatctatc aagggatcgg gccggaagcc
     2761 ggacatcgcg caggttggta caaccactat ggacgtgtct gggtgctgaa aaccgccccg
     2821 ggcgcaggta acgtctttag cggctgatgt gttattctgt ataccgtttt tacggatacg
     2881 acagggtgag ggataacctc acccttttta attctgaggt gctatgtctg tggtaattag
     2941 tgatgcatgg cgtcagcgtt ttggtggcac agcgcgtctg tatggtgaaa aagcgttgca
     3001 actgtttgct gacgcgcata tttgtgtggt tggtatcggt ggtgtcggtt cctgggcggc
     3061 ggaagcgctg gcgcgcacgg ggattggcgc aatcacgctt atcgatatgg atgatgtgtg
     3121 cgtcaccaat accaatcggc aaattcacgc tctgcgcgat aacgtcgggc tggcaaaagc
     3181 ggaagtcatg gcggagcgca ttcgccagat taacccggag tgccgtgtaa cggtggtgga
     3241 tgatttcgtg acgccggata acgtagcgca atatatgagt gccggttatt cgtacgtgat
     3301 tgatgccatt gatagtgtac gacccaaagc ggcgctgatt gcttattgtc ggcgcaataa
     3361 aatcccgctg gtcacgaccg gtggcgcggg tgggcagatt gacccgacgc agattcaggt
     3421 taccgatctg gcgaaaacga ttcaggaccc gctggcggcg aagttgcgcg agcgcctgaa
     3481 aagcgatttt ggcgtagtga aaaacagtat aggtaagctc ggcgtggatt gcgtgttttc
     3541 tactgaagcg ctggtgtacc cgcagtcaga cggtacggtg tgtgcgatga aagccacggc
     3601 agaagggccg aagcggatgg attgtgcatc tggatttggc gcggcaacga tggtgaccgc
     3661 cacctttggg tttgttgcgg tttctcatgc gctgaagaag atgatggcga aagcagcgcg
     3721 tcagggttaa acaatcaggt cggatgcgac gcgaacgtct tatccgacct ggttctgtgc
     3781 ttaaacctgc ttcgccgcag cgataattgc ctcgcttaac gcattcaacc cctggctgcg
     3841 tgaggcgcta agctgcccac gcaatcccag ctcatcaaac aatgccagcg gcgactgtgc
     3901 ctgtaattcg gcggcggttt tcccctcaac ggcagtcaac aacaccgcca acaggccgag
     3961 cacaatgcgc ccttcgctgt cgccaaagaa gtgcatttta ccgttttcag ccacggtata
     4021 tcccagccag acgcggtttt cgcatccggc aatctcttta gcctgcgctt ttaactcgtc
     4081 tggcaaagcc ggaagctgtt tccccaacat gatcaactgg cgatatttat cttcccattg
     4141 cgtcaacggt gcgaaggtat tgcgtaacgt ttctgcggtt acggttgtgc cgaacggatg
     4201 tccggcgaat tgcgggtttg tcattaatcc accaataatt ccagcgcgcg gtcaacggca
     4261 ttcaccagcg catccacatc actctttgta ttatatggcg caaaagaggc gcgcagtgtg
     4321 ccggttacgc ctaattctgc cagtagcggc tgagcacaat gttgcccggc ccgcaaggca
     4381 ataccgtact ccgccagtag cgtcaccata tcgctgtgat gaacgccagc aaaatcaaag
     4441 gccagcaggc tggaatcctg gcagcggaat gaacgaaagc ctggacgttt cgccagcgca
     4501 tcttccgcca gcgttgctaa gctatggctc cagttttcgg cctggttgat atcgtaatct
     4561 gccagccatt ccagcgccgc gcttaatcct atgacaccag ccacatttgg cgttcctgct
     4621 tccagtttcc acggcgcaga ttgagtcgtg aagccgtcaa aactcacttc gtgaatcatt
     4681 ttgccgccac ccagccaggg cgacatcgct tccagcagtt ctgatttgcc atacagcacg
     4741 ccgatacccg tcgggccata cagtttgtga ccagagaaag catagaaatc gatatccagt
     4801 tgctgaacat ccgcggggaa atgcaccgcc ccctgagcac catcaaccat caccaccatc
     4861 cctgctgaat gagcaaaggt aatcgctcgc gccagatccg ggcaaccgcc agtaacgttc
     4921 gacatctgac tcaacgccag aatccgacta cggggagtaa tcagttctgg caacaaatcg
     4981 acatccggca gtcgctgcgc attaagcggc aatttcacca ctttggctcc agtttgttgg
     5041 gcgaccatca gccaggggac gaggttggcg tggtgttctg ccacgctgac aataatctca
     5101 tcgcccggtt gcagacgcgg acgcgcatag cattgtgcca ccatgttgat ggattcagtg
     5161 gtgccgcgcg tccagacgat agttttatca tccggtgcat tcagtaattg cgccactttc
     5221 tctcgtgcag cttcataacg cgcggtcagg cgttgggctt cggcaaactg gctgcgatgg
     5281 acgtttccgg cgctcaggct gtaaaactgt cgagtggctt caaccacggc ttcaggttta
     5341 agcgcggtcg cggcgctgtc gagatagacg cccgcatcct gtagtgcggg aaactgggcg
     5401 cgaaactgcg cgggattaaa aacgttcatg gtactcctcg gcttgatgca ccgatcgtga
     5461 cgcaaaattc actttgatac aaggagagtg ctaaccatca gaattatctg gatatcctgg
     5521 cgaagccgcg taagtaacat atgctgaata gtgttaggcg ttaattttag cctgttaatc
     5581 aatactatta agatttatta atcgctttaa ggagaagatg atgaaaaaga ctgccgcaat
     5641 tatttctgcc tgtatgctga cttttgccct gagcgcctgt tccggttcga actatgtgat
     5701 gcacaccaat gacggacgta ccatcgtctc tgacggcaaa ccacagactg ataacgatac
     5761 cggtatgatt tcgtataaag acgctaatgg caacaaacag cagatcaacc gtactgacgt
     5821 gaaagagatg gtcgaactgg atcagtaatt cgcgatcgca aggtaaaaaa aagcaccgca
     5881 attaggcggt gctacattaa tcactatgga cagacagggt aaatgtacag gaagtgaaaa
     5941 aaggtagctt tgctaccatg gtctgaatcg cagaccaatt gcaaacacaa caacacaaca
     6001 tcacaaccgt aagccaaaag ttcaccagaa cacgcattcc gataaaactt ttcgttccgg
     6061 ctcaggaagt gccgccacta taggtatttg ctggtagaag ctcaacggac aatttataat
     6121 ggctcagatt aaaaaaacta ataggttaca tagtgtgatc taattgttaa attcatttaa
     6181 catcaaagtt taatagccat gtctaaacga ttaccaccgc taaatgcctt acgagttttt
     6241 gatgccgcag cacgccattt aagtttcact cgcgcagcag aagagctttt tgtgacccag
     6301 gccgcagtaa gtcatcaaat caagtctctt gaggattttt tggggctaaa actgttccgc
     6361 cgccgtaatc gttcactcct gctgaccgag gaagggcaaa gctatttcct cgatatcaaa
     6421 gagatatttt cgcaattaac cgaagcgacg cgtaaactcc aggcccgtag cgccaagggg
     6481 gcgttgacgg tcagtttact ccccagtttc gccattcatt ggttggttcc gcgactttcc
     6541 agctttaatt cagcttatcc gggaattgac gttcgaatcc aggcggttga tcgtcaggaa
     6601 gataagctgg cggatgatgt tgatgtggcg atattttatg gtcggggcaa ctggccgggg
     6661 ctacgggtgg aaaaactgta cgccgaatat ttattgccgg tgtgttcgcc gctactgctg
     6721 actggcgaaa aacccttgaa gacaccggaa gatctggcta aacatacgtt attacatgat
     6781 gcttcgcgcc gtgactggca gacatatacc cgacagttgg ggttaaatca tatcaacgtt
     6841 cagcaagggc caatttttag ccatagcgcc atggtgctgc aagcggctat ccacgggcag
     6901 ggagtggcgc tggcaaataa cgtgatggcg caatctgaaa tcgaggccgg acgtcttgtt
     6961 tgcccgttta atgatgttct ggtcagtaaa aacgcttttt atctggtttg tcatgacagc
     7021 caggcagaac tgggtaaaat agccgccttt cgccaatgga tcctggcgaa agccgctgct
     7081 gaacaagaaa aattccgctt tcgttatgaa caataattta cgtagggtac gaccatgacc
     7141 agccgtttta tgctgatttt cgccgccatt agcggcttca tttttgtggc tctgggcgct
     7201 tttggcgcgc atgtgttaag taaaaccatg ggggccgttg agatgggctg gatccagacc
     7261 ggcctcgaat accaggcgtt tcatacgctg gcgatcttag gtctggcggt ggcaatgcag
     7321 cgtcgcatca gtatctggtt ttactggagt agcgttttcc tcgcgttagg cacggtgttg
     7381 ttcagcggca gcctttattg cctggcgctg tcccatctgc gtttgtgggc gtttgtcact
     7441 ccggttggcg gcgtgagctt cctcgcgggc tgggcgttaa tgttagttgg tgctatccgt
     7501 ttaaagcgca agggcgtaag tcatgaataa ggttgtattg ctgtgccgtc cgggctttga
     7561 aaaagagtgc gccgcagaaa ttaccgataa agccggccag cgggaaattt tcggttttgc
     7621 ccgcgtgaaa gagaattcgg gttatgtcat ttatgaatgt tatcaacctg atgatggcga
     7681 taagttaatc cgtgagctgc cgttcagttc attaattttt gcccgccagt ggtttgtggt
     7741 gggggaactc ctgcagcatt tgccgccaga agatcgtatt acccccattg tcggcatgtt
     7801 acagggcgta gtagagaagg gcggtgaact gcgtgttgaa gttgccgata ccaacgaaag
     7861 caaagagttg ctgaaattct gccgtaaatt tactgttccg ctacgcgctg ccttgcgcga
     7921 tgccggggtg ctggcgaact atgaaacgcc gaagcgtccg gttgtgcatg tattctttat
     7981 tgcaccaggc tgctgctata ccggttactc atacagcaac aataattcgc cgttctatat
     8041 gggcattccg cgcctgaaat ttccggcaga ggcgccgagt cgttccacgc tcaaactgga
     8101 agaggcattt catgtgttta ttcctgcgga tgagtgggat gaacgcctgg cgaacgggat
     8161 gtgggcggtg gatttaggcg cttgccctgg cggctggacc taccaactgg tgaagcgcaa
     8221 catgtgggtt tattccgtcg acaacggccc gatggcgcaa agtctgatgg ataccgggca
     8281 ggtgacgtgg ctgcgggaag acggtttcaa attccgtccg acacgcagca atatctcctg
     8341 gatggtatgc gatatggttg aaaaaccggc taaagttgcg gcattgatgg cgcagtggct
     8401 ggttaatggc tggtgccgtg aaaccatttt caatctcaaa ctgccgatga aaaaacgcta
     8461 cgaagaagta tcacacaatc tggcgtatat tcaggcacag cttgatgaac atggcataaa
     8521 tgctcagatt caggcgcggc agttgtatca cgatcgcgaa gaagtgacgg tgcacgtccg
     8581 ccgcatctgg gctgcggtgg gtggtcgtcg cgacgagcga taacaggcaa ggccggggcg
     8641 tcgtcttcgg cctgctaccc tttccgtcag gctgttacca aagaagttgc aacctggcgc
     8701 tcatcagaaa taatgtgcgt tacctcatcc agatgcccga tgcgggcttc ccctgaacga
     8761 ttaaatttac ttttatcaat caataacaac gattgcgcgg cacgttttaa tagcatcgat
     8821 ttgtaatcag cgttgatcgc attggagtcc cacagtgcgc cgctgctatc gatcccttca
     8881 caagaaaaaa taaacagatc gatttccagc gatttaagtt gggaaatcag cgagggattg
     8941 acgtaacagc catatttgcg ctcaagtgtg ccgccggaac tgatcagttg aatgcgttcg
     9001 cgtttaccga gttcatagca aatcggatgg ctattggtga agacctgaat gttgatgtca
     9061 ggcaactggc gtgccagata ccagcaagtt gaactggcgt ctaaggctat caccatccct
     9121 tcttcaatcc acgcgagcgc ctcgcgcgcg atatctgctt tatgcgcata atggcttttc
     9181 agcctgatgt gaaagggatc gccactgtct tgattttgac ggtggatata tttagcgcgt
     9241 ccatgattgc gcagaatttt accctgcgtc tgtaattcat tgagatcgcg acgaatggtt
     9301 tctttactga cctttagctg ttcagagaga gcttccgtgg tcaggctggt atggttcagc
     9361 agcaggtcga ctatcgcttg ctggcgtgcc gctttcatat ttttcacccc atcattcgat
     9421 aaccgcccgc gtcatgcggg cgtaccggta tgagattacg gtgttacccc tttttttaaa
     9481 agaatattcc cgtacttcgc tcgttcgcct gtgataacga tcgcaaaggc tttttgcgcc
     9541 cgttcataaa acgcaaaacg attgatgcgg atgatgtcag gacacggggc ttgtagtgaa
     9601 agcgcattac ggtaacgtcg ttctacttca ggatcgagag tgtcaccttc taccgccgcc
     9661 atcatcacca gcggcggtgc ataactgtcc agttcaaata acgggataat cgcctggagc
     9721 aagtcgctca ccaacaggcc atcagcgcgg atcacctgcg gtcccatcga atgggcggga
     9781 aagtgagcat cggaaaaaat aatttcatct ccatgtccca tctctgccag cactttcaat
     9841 agttcgggag aaattaacgg cgaaattgtt ttcagcattt cacacttcct ctataaattc
     9901 aggttcagtt tgcgggtaga aataacggta ctgataatga atctgtgcgc gggcttcttc
     9961 agggctgtta aattccccta cgccatacca accgaacagc gcagctcctg cgacggtcgt
    10021 ttcggcgtcg tcgagaactt ttaccggaat atcaagcata ttggctttaa tctgattcca
    10081 caatgtgttg cgacttcctc caccgactaa caataattca gaggccttaa agtgcccgat
    10141 tttttccagc atctgtagat tgcgctgtaa ttgcgcagtt aacccttcca gcgccgcgcg
    10201 atagaaatgc ccccgcgtgg tattaagcgt cactccttgc cagccagcgt tctgacacga
    10261 caataaatca cactgcattt ttacgccatc cgcgctaggc gcgataagac gagcttcttc
    10321 aatcaacatt tgccagggtg tttcagccgt ccagaacagt tttctcaccc attccagcac
    10381 gccggatgcc agccattgca tacctgggtt atacaaccct gcctggctat ccagttcgca
    10441 ggtggaaccg gcgtactgac ttaacagcga agtatcaacc tgggcgctac ggaccattaa
    10501 aatttcccat gtaccggaag agagcacggg ttcattttgg tcggcaccag cgccaaaaag
    10561 ggcgaactgg gtatcgtgac ctgcggaaat caccggtatg ccaacgggta agccgagcat
    10621 tgctgcggcg ctgttctgta gcgtaccaat ctgttcaccc gcttccacca gacgagggaa
    10681 gagtcggcgt ggaataccag tggcttgtaa aatttgcgga ctgaaatcgc gttgctggat
    10741 atccagcatc tggctggttc cggccatcgt gatatcagta gtgaattcgc cggttaaacg
    10801 gtggttaatc agcgacgaaa taaagaacca ggcgtgcgtg cgttccagca gttgtggatg
    10861 attttctttc aaccacacca acttatataa cgtattgaaa ctaaaggctc cgacgccaga
    10921 aatagcctgc aaccgctgtg cggagatcaa ctgttcaata ttgtccataa ccgctgctgt
    10981 tcgcggacat ttccagctaa tgatcggata gagcagattg ccttgcttat ctaccagagc
    11041 gccatccaca ccaaaggtgg tgacggcgat accgcggatg tggcattcag tcagttcact
    11101 attgatttgc cgacagcaat cagcaaagcg ttgcaaaatg gcgtctaaag accactggtg
    11161 ccaggtgttg ttttccatcg cgatatcgct ggcattaggc gttgaggcgc gggcaacaat
    11221 ttttccctgc cgattaaccg cgatggccct gacattggtc gcgccacagt cgagtaccag
    11281 gataacttct tgtttcataa tcgctcctgc aatacttcaa tatccatgcc gtgcgcagcc
    11341 caggcagaag gacgatacac tttggtctct tcaacgttgt gcatacatac cgggatacgc
    11401 agcatggagg cgagagtgat aaagtcagcg ccaacgtggc cgatggtcag aaccccatgg
    11461 ttagcgcccc agttcgccat taccgagtac acatccgtaa acggcccttt accggtgagg
    11521 cgcggtgcaa accaggtggt tggccaggtt gagttggtgc gtttgttgag gatgtcatgc
    11581 acatccttcg gcaattccac gctccagcct tccgcgattt gcagtaccgg tcccaggcct
    11641 ttgatgatgt tgacacgagt catggtgaac gggacgccgc cttcggtaag gaagcgggaa
    11701 gagtaaccgc cgccacggaa gtattcgtgg atcgccgggc accattcggt agcggcgagg
    11761 caagcgtcag cctcttgctg agagatttcc cagtgcggct tcatcgtcgg gttaccttcg
    11821 ctgtcgcgtt gtttacagga accgtccagc gcagcagaac ctgagttgat caaatggatg
    11881 atgccgtgtt ctgccagtcc atcgagttta tgccccgtta cacgctcaat tgcttctggt
    11941 gaccagtagg tacgcacatc ggcaaatacc tgagcggtgc cggtgagctg gtgacccatt
    12001 agcattgcca cgccgttaag actgtcgttt tcggtcgcca cgacaaaggg ttcgcgcacg
    12061 ccattccagt caaatgaact gttgaggatc gcttcggcgg tgtcaccatt gggatattga
    12121 tcggtccagt gacgttgccc ctggaagccc gcagcgatgg cgttgtagcc aagtgattct
    12181 tccacgcgac caatatcggc cagtttgctg ttgccttgca tcatgtcgcg gatacacatc
    12241 gccatcagta aactttcgcg cagaactgcg cggctttgct cggcattgcg ttgatactgt
    12301 ttgttatttt catcttcgcc atagcggaag tttttatcag cccaggccag tgccatttcc
    12361 agttcggctt cgtcgtaaat cttctgatcg atacggcgac gcagttcggt catatccacc
    12421 gcctggactt tcattcccag ccaggattca aagaagttgt gatcaacgat ggaaccggcg
    12481 atacccatcg aaacgccgcc cagcgacaga tagcttttac ctttcatgct ggcgacggcc
    12541 aaaccggcgc gggcaaagcg cagcagtttt tcttcaacat cggcaggaat cgatgtgtca
    12601 tcggcatcct gaacgtcatg accgtaaatg gagaatgccg ggatgccttt ctggctgtga
    12661 gctgccagag ccgctgccag gtaaacagcg ccgggacgtt cagtgccgtt aaagccccaa
    12721 atggctttcg ggcgggttgg atccatgtcg atggtttcac tgccatagca ccagcaaggc
    12781 gttaccgtaa tggtgaggcc tacattctgg ctgctgaatt tttcttcgca agcagcggct
    12841 tcagccatac ccgcgataca ggtatcggaa atgacacact cgacggcagc tccgcaggca
    12901 tggcgcagtt tctcggtcag cagtgcggcc gtagctttcg ccatattcat tgtttgttct
    12961 tcaagcgact cacgaacacc catgcgacga ccgtcaataa ccgggcggat accaattttc
    13021 ggtaagctga tttttttcat tacagattcc tcactttatt cggaaaatat gttcagttag
    13081 ttgccgtttg agagcggaaa cgggcaaaga taaagatgac cgcgaagcag agtgcgggga
    13141 tcagttcagc agtggggatg ttgcccgccg cgtcactgac aaaacccatg accggagtga
    13201 caataccgcc gccaataatg gtcataacga tgaaggacga accgtatttg gtgtcctggc
    13261 cgagattctt aatgcccagc gagaagattg ttgggtactg aatcgacata aaggcgctgc
    13321 ataaagtcag ggctattaag cccacatgac cgccagcgaa ggctgagatc aggcacagtg
    13381 ccatagcgat taatgcgtag gcggccagga ctttgtgtgg tgcgaagcga ctgatgagcc
    13441 aggtaccggt gaaacgacca ataaagaagc acaccatggt tccggttaaa tagttagcgg
    13501 caaagcctgc agtcatacct ggaatttctt ctacagcgta gcgaatcaaa tagctccagc
    13561 aggccgtttg tgcgccaacg tagcagaatt gcgctaatac tgcccagcgc cagtggcgaa
    13621 tacgcgccag gcgagaaagc gatgcggaga acgatccttg tttggcgtca ctgtgattat
    13681 cactctgcaa tgccgggaat ttcgtcagca tgatcagcag ggcgaccagt aacacgatag
    13741 ccacgatgat catataaggt gtctgtaccg ataataccag gctgtgttta tacgcactca
    13801 attgctctgg agacatttta tcgagaacgt cttgcgattg atgtggcacg ttagacaaaa
    13861 taagactttg cccaaagaca accgcgataa ttgcgccaaa cgagttaaat gtttgcgcaa
    13921 gatttaagcg gaagtgacca ctgctttccg gccctaatac cgtaacaaaa gggtttgcgg
    13981 cagtttccag acaacctaat ccggctgcaa taataaatag gccaactaaa aataaggtgt
    14041 agttcattat ttctgcagcg ggccagaata atgcagcgcc cagggcatat aaaaataacc
    14101 cagtaataa
//
LOCUS       DAJVSY010000106        13638 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.106, whole genome shotgun sequence.
ACCESSION   DAJVSY010000106 DAJVSY010000000
VERSION     DAJVSY010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13638)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13638)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13638
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.106"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(1..1867)
                     /gene="speC"
                     /locus_tag="OQQ19_002838"
                     /pseudo
     CDS             complement(1..1867)
                     /gene="speC"
                     /locus_tag="OQQ19_002838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311868.2"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase"
     gene            2265..2963
                     /locus_tag="OQQ19_002839"
     CDS             2265..2963
                     /locus_tag="OQQ19_002839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HCS1804394.1"
                     /translation="MVIGPFINASAVLLGGVLGALLSQRLPERIRISMTSIFGLASLG
                     IGILLVVKCANLPAMVLATLLGALIGEICLLEKGVNTAVAKAQNLFRHSRKKPTHESF
                     IQNYVAIIVLFCASGTGIFGAMNEGMTGDPSILIAKSFLDFFTAMIFACSLGIAVSVI
                     SIPLLIIQLTLAWAAALILPLTTPSMMADFSAVGGLLLLATGLRICGIKMFPVVNMLP
                     ALLLAMPLSAAWFA"
     gene            3069..3144
                     /locus_tag="OQQ19_002840"
     tRNA            3069..3144
                     /locus_tag="OQQ19_002840"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3102..3104,aa:Phe,seq:gaa)
     gene            complement(3293..3829)
                     /gene="yghD"
                     /locus_tag="OQQ19_002841"
     CDS             complement(3293..3829)
                     /gene="yghD"
                     /locus_tag="OQQ19_002841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GspM family type II secretion system protein
                     YghD"
                     /protein_id="HCS1804395.1"
                     /translation="MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAV
                     VFLFSVGYYVLIWQPLSERIVQQETMLQQLVAMNTRLRSAAPDIIAARKSATTTPAQV
                     SRVISDSASAHSVVIKRIAERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDAS
                     AAEKTGMVNVQRLEFGRG"
     gene            complement(3831..5009)
                     /gene="gspL"
                     /locus_tag="OQQ19_002842"
     CDS             complement(3831..5009)
                     /gene="gspL"
                     /locus_tag="OQQ19_002842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000097227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspL"
                     /protein_id="HCS1804396.1"
                     /translation="MSSILEIFFPLCAADPIHWQRRTPDVEHGIWSDVANEQLQQWLQ
                     TDAIRLYIPGEWISVWQVELPDVARKQIPTILPALLEEELNQDIDELHFAPLNIDQQL
                     ATVAVIHQQHMRNIAQWLQENGITRATVAPDWMSIPCGVMAGDAQRVICRIDECRGWS
                     AGRALAPVMFRAQLNEQDLPLSLTVVGIAPEKLSAWAGADAERLTVTALPAVTTYGEP
                     EGNLLTGPWQPRVSYRKQWARWRVMILPILLILVALAVERGVTLWSVSEQVAQSRTQA
                     EEQFLTLFPEQKRIVNLRSQVTMALKKYRPQADDTRLLAELSAIASTLKSASLSDIEM
                     RGFTFDQKRQILHLQLRAANFASFDKLRSALATDYVVQQDALQKEGDAVSGGVTLRRK
                     "
     gene            complement(5006..5983)
                     /gene="gspK"
                     /locus_tag="OQQ19_002843"
     CDS             complement(5006..5983)
                     /gene="gspK"
                     /locus_tag="OQQ19_002843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001554494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspK"
                     /protein_id="HCS1804397.1"
                     /translation="MITSPPKRGMALVVVLVLLAVMMLVTITLSGRMQQQLGRTRSQQ
                     EYQQALWYSASAESLALSALSLSLKNEKRVHLAQPWASGPRFFPLPQGQIAVTLRDAQ
                     ACFNLNALAQPTTASRPLAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRL
                     GREDSEYLARSVPFYAANQPLADISEMRVVQGMDAGLYQKLKPLVCALPMIRQQININ
                     TLDVTQSVILEALFDPWLSPVQARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQL
                     KTVLSVDSNYFWLRSDITVNEIELTMNSLIVRMGPQHFSVLWHQTGESE"
     gene            complement(5986..6585)
                     /gene="gspJ"
                     /locus_tag="OQQ19_002844"
     CDS             complement(5986..6585)
                     /gene="gspJ"
                     /locus_tag="OQQ19_002844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001255030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspJ"
                     /protein_id="HCS1804398.1"
                     /translation="MRRTRAGFTLLEMLVAIAIFASLALMAQQVTNGVTRVNSAVADH
                     DQKLNLMQQTMSFLTHDLTQMMPRPVRGDQGQREPALLAGAGVLASESEGMRFVRGGV
                     VNPLMRLPRSNLLTVGYRIHDGYLERLAWPLTDAAGSVKPTMQKLIPADSLRLQFYDG
                     TRWQESWSSVQAIPVAVRMTLHSPQWGEIERIWLLRGPQ"
     gene            complement(6582..6953)
                     /gene="gspI"
                     /locus_tag="OQQ19_002845"
     CDS             complement(6582..6953)
                     /gene="gspI"
                     /locus_tag="OQQ19_002845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001709020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspI"
                     /protein_id="HCS1804399.1"
                     /translation="MKRGFTLLEVMLVLAIFALAATAVLQIASGALSNQHVLEEKTVA
                     GWVAENQTALLYLMTREQRAVRHQGESDMAGSRWYWRTIPLNTGNALLQAVDIEVSRH
                     EDFSSVIQSRRAWFSAVGGQQ"
     gene            complement(7013..7513)
                     /gene="gspH"
                     /locus_tag="OQQ19_002846"
     CDS             complement(7013..7513)
                     /gene="gspH"
                     /locus_tag="OQQ19_002846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001115132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspH"
                     /protein_id="HCS1804400.1"
                     /translation="MPERGFTLLEIMLVIFLIGLASAGVVQTFATDSEPPAKKAAQDF
                     LTRFAQFKDRAVIEGQTLGVLIDPPGYQFMQRRQGQWLPVSATRLSAQVTVPKQVQML
                     LQPGSDIWQKEYALELQRRRLTLHDIELELQKEAKKKTPQIRFSPFEPATPFTLRFYS
                     AAQNAC"
     gene            complement(7517..7972)
                     /gene="gspG"
                     /locus_tag="OQQ19_002847"
     CDS             complement(7517..7972)
                     /gene="gspG"
                     /locus_tag="OQQ19_002847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003912123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system major pseudopilin GspG"
                     /protein_id="HCS1804401.1"
                     /translation="MNSLSRTHKPRAGFTLLEVMVVIVILGVLASLVVPNLLGNKEKA
                     NRQKAISDIVALENALDMYRLDNGRYPTTEQGLEALIQQPANMADSRNYRTGGYIKRL
                     PKDPWGNDYQYLSPGEKGLFDVYTLGADGQENGEGAGADIGNWNLQEFQ"
     gene            complement(7989..9212)
                     /gene="gspF"
                     /locus_tag="OQQ19_002848"
     CDS             complement(7989..9212)
                     /gene="gspF"
                     /locus_tag="OQQ19_002848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001173399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system inner membrane protein
                     GspF"
                     /protein_id="HCS1804402.1"
                     /translation="MALFYYQALERNGRKTKGMIEADSARHARQLLRGKELIPVHIEA
                     RMNASAGGMLQRRRHAHRRVAAADLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHV
                     KSLGMALRSRIQEGYTLSDSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQ
                     RQRLKSRLLQAMLYPLVMLVVATGVVTILLTAVVPKIIEQFDHLGHALPSSTRALIAM
                     SDALQASGVYWLAGLLALLVLGQWLLKNPTMRLRWDKTLLRLPVTGRVARGLNTARFS
                     RTLSILTASSVPLLEGIQTAAAVSANRYVEQQLLLAADRVREGSSLRAALAELRLFPP
                     MMLYIIASGEQSGELETMLEQAAVNQEREFDTQVGLALGLFEPALVVMMAGVVLFIVI
                     AILEPMLQLNNMVGM"
     gene            complement(9212..10704)
                     /gene="gspE"
                     /locus_tag="OQQ19_002849"
                     /pseudo
     CDS             complement(9212..10704)
                     /gene="gspE"
                     /locus_tag="OQQ19_002849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001525635.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system ATPase GspE"
     gene            complement(10704..12764)
                     /gene="gspD"
                     /locus_tag="OQQ19_002850"
                     /pseudo
     CDS             complement(10704..12764)
                     /gene="gspD"
                     /locus_tag="OQQ19_002850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020234996.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system secretin GspD"
     gene            complement(12794..13623)
                     /gene="gspC"
                     /locus_tag="OQQ19_002851"
                     /pseudo
     CDS             complement(12794..13623)
                     /gene="gspC"
                     /locus_tag="OQQ19_002851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016238556.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspC"
BASE COUNT         3056 a         3933 c         3518 g         3131 t
ORIGIN      
        1 agcgctatgc gcatcctggg ggttcatcac cactgacggg aaactctgct ggcggaacat
       61 cgctttttgt aggtctttga cgtcgaaact gacatacaga tcgtgcatct cctgacacaa
      121 ctggcgcaaa gtgtagtcgc gatagcgcac cggatatttg ttataaacgc tcggcaacac
      181 ctcagccagc ggcgagtcat cctcaatatg ctgttcaaac tgcgccaaca tctctaccag
      241 ttgtgccagc ttctcgtggc tttccgccgg agttaataag aacagaatgg agttgagatc
      301 gcacttctcc ggcacaatgc cgttctcacg cagatagtgc gccagaatcg tcgccggaac
      361 gccaaagtcg ctatattcgc cggtttcggc attgatacct ggtgtagtga gtaacagctt
      421 gcacggatca acaaaatact gatccgcggc atatccttca aagccgtgcc acttcgcccc
      481 cggctcaaaa ctgaaaaaac ggcggtcgct ggctaacact gatgtcggat aatcctgcca
      541 caatttgcca tcaacaacgg gcgggataaa cgggcggaac agcttacagc gcgcaagaat
      601 agccttgcgc gactcaatac ccaactcaac gcactcagcc cacagccgac gcccactctc
      661 cccttcatga attttggcgt taacatccag tgcagcaaac agcggataga aagggctggt
      721 agaagcatgg agcataaagg cgttattcaa ccgcttatgc gggcaaaaac gcgcctgtcc
      781 gcggatatgg ttatcttttt tatggatctg cgacgtctgt gagaatcccg cctgctgttt
      841 gtgcaccgac tgagtcacaa agatccccgg atcgttttcg ttaagttcta atagcagcgg
      901 cgagctatcc gccatcatcg ggataaactg ttcgtaaccg acccacgcgg aatcaaacag
      961 aatgtaatca cacagatgcc caacggtatc gatcacctga cgggcgttat agacagttcc
     1021 gtcataggtt cccagctgaa taatcgccag gcgaaacggg cgcggcagct cggctttttc
     1081 tggcgcaacg tcgcgaattt gctggcgcag atactcttca ttaaaacagt gcgcatcaat
     1141 accgccaatg aaaccaaacg ggttgcgtga agcttccaga tagaccggcg tcgcccccgc
     1201 ctgaatcagc gcgccgtgat gattcgactt atggttgtta cggtcgaaga gcaccagatc
     1261 gccacgcgtt aacagcgcat tcgtcaccac tttattcgct gccgatgtgc cgttcagcac
     1321 aaaataggtt ttatcggcat gaaagacttt ggctgcgaat ttctgcgcat ctttcgccaa
     1381 taagcagatc gcccaatttt acgtcagcgt tacacatatc ggcgcgaaag acgttctcac
     1441 caaagaaatc gtaaaaatgg cgtccggcag gatgcttttt aaaaaacgca ccatgttgat
     1501 gtccagggca agcaaaggtg ctgttgccca tctcaacgta ctgcgtcagc gtgtcataaa
     1561 acggtggcag caaattctct tcatactgac aggctgcgga ttccagctcc agccactgct
     1621 gctcgttgcc gttgattacc gccgtaacgc ccgcaggtaa ttcaacagca tgttcggaat
     1681 acaaaaacac cggtagatga aaaccggtgc gcttaagcaa cgcaagaatg ccactgcgac
     1741 tatccgcagc ggtaatgacg actgccacga cgtccgtaaa atcagtatct cccaacgcca
     1801 ccacgcgacg atgagaagaa agtcgggata ccagttcact actggcggca atattcattg
     1861 atttcataag cgcaaacccg tttcggggaa gtaagaatac cggacaaggt ggaaaaccct
     1921 gccccatgag atatgggtca aactggtcac cagctccgac cgccagacat cagtaaaagc
     1981 agaaacgctc tgattttact gttgtcctgc agtgagcgtg cgttaacttc accgcatgag
     2041 cagtaacata gaaagggaaa cgtttcgcgc gaaacggcga taagcgagag aatgtaagga
     2101 ggtggcgtgc atcgggcaaa ctccgtacag agaggagaaa attcgcgcaa tcatggcacc
     2161 tttcgctaaa gcgtgcaagc caggactttg cgaccagaca agccatcaac aaggcaaaaa
     2221 gttcataata agaaaatcaa acaatacagt taacaggaac tcttgtggtc atcggccctt
     2281 ttatcaacgc tagtgcagtc ttactgggtg gcgttctcgg cgcactgctc agccaacgct
     2341 taccggaacg tatccgcatc tccatgacat ctatttttgg tctggcatcg ctggggattg
     2401 gtattttact ggttgtgaaa tgcgccaacc ttccagcgat ggttttagct acgctacttg
     2461 gcgctctaat tggcgaaatt tgtttgctgg agaaaggtgt caatacagca gtcgccaaag
     2521 cacaaaatct gtttcgtcac tcacgtaaga agccaacgca tgaatctttt attcagaatt
     2581 atgtcgcgat tattgtcctg ttttgcgcca gcggcaccgg gatcttcggg gcgatgaacg
     2641 aagggatgac cggcgatccg agtattttaa tcgccaagtc atttcttgat ttctttacgg
     2701 cgatgatctt cgcctgctcg ctgggtattg cggtgtcggt aattagtatc ccattactga
     2761 tcatccagtt aacgctggcg tgggctgccg cgctgatatt accgctgacc acaccgtcga
     2821 tgatggcaga cttcagcgcc gtaggcggtt tattgctgct ggcaaccgga ttacgcatct
     2881 gtggcattaa aatgttcccg gtggtcaaca tgcttccagc actccttctg gcaatgccgc
     2941 tttccgccgc ctggtttgcc tgacaatgcg tgcaatagcg gcaaagtgat gatagattgt
     3001 gcagtctgca gtaaattgaa gaaatttgat tgacgagacg aggcgaatca ggtttaatgc
     3061 gccccgttgc ccggatagct cagtcggtag agcaggggat tgaaaatccc cgtgtccttg
     3121 gttcgattcc gagtccgggc accactaatt cttaagaacc cgcccacaag gcgggttttt
     3181 gcttttggat ctgacaataa ccttcacgaa aaaagtttgc ttataaagtc tgggggaatt
     3241 actctcgcca cgttaacgag agtaatttta ttgatactaa tctcctgata ctttaccccc
     3301 gtccaaactc cagccgctgg acattcacca tcccagtctt ctcagcagca ctggcatcaa
     3361 tttgtgtcac ccgcagcgca tacttttcat ccagcgcgtt taaccagttc agcaggtcat
     3421 taaacaccac cggatctatc cagacctgaa tattctcccc acgctcggct atccgcttga
     3481 tgactaccga gtgcgcggaa gcactgtcac tgataacccg cgatacctgc gcaggcgttg
     3541 ttgtggcgga ttttcgcgcc gcaataatat ccggcgcggc gctcctcagt ctggtgttca
     3601 tcgccaccag ttgctgcaac attgtctcct gttgtactat ccgttcgctc aacggctgcc
     3661 agatgaggac gtaatatccg acgctaaaca ggaacaccac cgctgccagt aacatgccct
     3721 tttcacgcgg agaacgcccc gccaggtgtt gtgccagcca gtgttcgcca cggcttaact
     3781 ggcgttcacg ccattgctga aaatagtgaa taaatttatc gcgtaacatg ttatttcctc
     3841 cgcaacgtta cgccgccgga aaccgcatca ccctctttct gtaacgcgtc ctgttgcaca
     3901 acataatcgg ttgccagtgc actacgcagt ttgtcgaaac tggcaaagtt cgcggcccgt
     3961 agctggaggt gaagtatctg gcgtttttga tcaaaggtaa aaccacgcat ttcgatgtcg
     4021 gaaagtgacg ctgatttcag ggtgctggct atcgctgaca actcggcgag cagccgggta
     4081 tcgtcggcct gtgggcgata ttttttcagc gccatcgtca cctgagagcg taaattcaca
     4141 atccgcttct gctccgggaa caacgttaag aactgttcct ccgcctgggt gcggctttgc
     4201 gccacctgtt cgctgacgct ccataacgtc acgccccgct ccactgccag cgcaactaga
     4261 atcagcaata tcggcagaat catcacccgc cagcgcgccc actgttttcg gtagctgacg
     4321 cgaggctgcc acggccctgt cagcaggttc ccttccggtt cgccataagt ggtaacggcg
     4381 ggcagagctg taacggtcag gcgttcagcg tctgcgccag cccatgctga tagcttttcc
     4441 ggtgcaatgc cgactacggt tagcgaaagc ggtaaatcct gctcattgag ctgggcgcgg
     4501 aacatgaccg gagccagcgc ccgcccggcg ctccatcccc ggcattcatc aatgcggcag
     4561 ataacccgtt gcgcatcgcc agccataacc ccacaaggaa tggacatcca gtctggcgcg
     4621 acggtagcgc gggtgatgcc gttttcctgc aaccactgcg caatgttgcg catatgctgt
     4681 tggtgaatca ctgctacggt tgccagttgc tggtcgatat tcaacggggc gaaatgcagt
     4741 tcatcgatat cctggttcag ctcttcttcc agtaaggcgg gcagaatggt cggtatctgc
     4801 ttacgggcga catcaggcag ttcaacctgc cagacgctga tccattcgcc gggaatgtag
     4861 agtcgaatcg catcggtttg cagccattgc tggagctgtt cgttagcaac gtcagaccag
     4921 ataccgtgct ccacatcggg tgtacggcgc tgccaatgga tgggatcagc ggcgcaaagc
     4981 gggaaaaaaa tctcaaggat ggaactcact cactttctcc tgtctgatgc cagagaaccg
     5041 aaaagtgttg tgggcccatg cggacaatta acgagttcat cgtcagttca atctcattca
     5101 cggtgatatc tgaacgcagc cagaagtaat tgctgtccac gctcaggacg gtttttagct
     5161 gttttttagt acgctcatcg acgtcagcaa gtagcggctg tgcaagaaac tgatcgacat
     5221 cttcccagcc cttcgccgga cgttgttgta ataacgcccg cgcctgaacg gggcttaacc
     5281 acgggtcaaa cagcgcctca agaatcacac tttgcgtgac gtctaaagta ttgatgttga
     5341 tttgctggcg gatcatcggc agcgcacaga ccagcggttt cagtttttga taaagcccgg
     5401 cgtccattcc ctgtaccacg cgcatctcac tgatatcagc cagcggttga ttggcggcgt
     5461 agaacggcac cgaacgggcg agatactcgc tgtcttcacg gcccagacgt gtctgcacgc
     5521 tgcggtcctc gtcaataaac tcccacaggc tttcggctat cagttcggcc cgataagcag
     5581 gcacatccag gcgcgagatc agggcaatca actgttgtac cgcaagcgga cgcgacgccg
     5641 ttgtcggctg agcaagggca ttcaggttaa agcaagcctg tgcgtcacgc agggtgaccg
     5701 caatttgccc ctgcggcaga gggaagaaac gagggccgga tgcccacggc tgtgccagat
     5761 gcacgcgctt ttcatttttc aggctcagac tgagcgcgct cagcgccagg ctttccgcac
     5821 tggcgctgta ccacagcgcc tgctggtact cctgctggct gcgcgttcgc ccaagttgtt
     5881 gctgcattcg cccggaaagc gtgatggtta ccagcatcat aaccgccagc aataccagca
     5941 ccacgaccag tgccattccg cgttttggtg gtgaggtgat catgattatt gcggcccgcg
     6001 taacaaccag atgcgttcaa tctcgcccca ttgcggcgaa tgcagggtca tgcgtaccgc
     6061 cacagggatc gcctgtactg acgaccagct ctcctgccag cgcgtgccgt cgtagaactg
     6121 caaacggagc gaatcggccg gaatcaactt ttgcattgtc ggcttcacgc tgcctgcggc
     6181 atcggtcagc ggccaggcta accgttcgag ataaccgtca tgaatgcggt aaccgacggt
     6241 gagcagattg ctgcgcggca gacgcatcaa cgggttaacc acaccgccgc gcacaaaacg
     6301 cattccttca ctctcagacg ccagcacgcc agcgccagcc agtaaagctg gttcacgctg
     6361 gccctgatcg cctcttaccg gacgcggcat catttgggtc agatcgtggg tcagaaaact
     6421 catcgtttgc tgcatgaggt ttagtttttg atcgtgatcg gcgacggcgc tattcacgcg
     6481 cgtgacgccg ttagtcacct gctgcgccat cagtgccagc gaggcaaaaa tggcaattgc
     6541 caccaacatt tccagtaacg tgaaaccagc gcgagtcctt ctcactgttg gcctcccacg
     6601 gcgctaaacc aggcgcgtcg tgactgaatc accgacgaaa agtcttcgtg acggctgact
     6661 tcaatatcca ccgcctggag cagcgcgttg cctgtattca atgggattgt tcgccagtac
     6721 cagcggcttc ctgccatatc gctctcgccc tgatgcctga ccgcccgctg ctcacgggtc
     6781 atcaggtaga gcagcgcagt ctggttttca gctacccagc ccgctaccgt tttttcctca
     6841 agaacgtgct gattactcag cgcaccgctg gcaatctgta acaccgccgt ggcagccagc
     6901 gcaaaaatcg ccagcacgag catcacttcc agcaaggtaa atccgcgctt catggcatcc
     6961 tctcatcaca ttgattgagg gataacgcgc catcgtgtgc cagctttacc gctcaacatg
     7021 cgttttgcgc cgccgagtag aagcgcagcg taaacggcgt ggcgggttca aaaggcgaaa
     7081 aacggatctg cggcgtcttc tttttcgcct ctttttgcaa ctccagttca atatcgtgca
     7141 gcgtcaggcg acgacgttgc agctccagcg catattcctt ctgccagata tcacttccgg
     7201 gttgtaacag catctgcacc tgtttcggca ccgtaacctg tgccgataac cgggtcgcag
     7261 aaacgggcaa ccactgcccc tgacgacgct gcataaactg atagccaggc gggtcgatta
     7321 gcacaccgag tgtctgtcct tcaatcactg ccctgtcctt aaactgcgca aagcgagtca
     7381 gaaaatcctg tgccgctttt ttcgcgggcg gttcagaatc ggtcgcaaac gtctgtacca
     7441 cgcccgcact ggcaaggccg ataaggaaaa tcaccagcat gatttccaga agtgtgaatc
     7501 cgcgttcagg cactgcttac tgaaactcct gcaaattcca gttaccgata tctgcgccag
     7561 cgccttcccc gttttcctga ccatccgccc ccagggtata aacatcaaac agtccttttt
     7621 cacccgggct gagatactga taatcattgc cccacggatc ctttggcagt cgtttgatgt
     7681 atccaccagt acggtagttg cgggagtccg ccatattggc tggctgctgg atcagcgctt
     7741 ccagcccctg ttctgtggtc ggataacgcc cgttatccag tcggtacata tctagtgcgt
     7801 tttccagcgc cacgatatcg ctgatggctt tttgccgatt ggctttctct ttgttgccca
     7861 acaggttagg caccaccaga cttgccagga cgccaagaat aacaatcacc accatcactt
     7921 ccagcagggt aaaacctgcc cgtggtttgt gtgtgcggga taacgaattc atgtgataac
     7981 tccgtaaatt acattccaac catattattc agttgcagca tcggctcgag gatggcgatg
     8041 acaataaaca gcaccacgcc cgccatcatc accaccagcg caggctcaaa cagccccaac
     8101 gccagcccca cctgggtatc aaattcccgt tcctggttaa cagcggcctg ctcaagcatg
     8161 gtttccagtt cgccgctctg ttcgccggaa gcgataatgt acagcatcat cggcgggaac
     8221 aggcgcaact ccgccagcgc ggcgcgcaga ctgcttcctt cgcggacgcg atctgccgcc
     8281 agcagcagtt gttgttcgac atagcgattt gccgacacgg cggcagcggt ctgaatgcct
     8341 tccagtagcg gaacactgct ggcggtgagg atgcttaatg tgcgggaaaa acgcgccgta
     8401 ttcagcccgc gcgcaacacg gcccgtcacg ggcagacgca gcaaggtttt atcccagcgc
     8461 aggcgcatag taggattttt aagtagccat tgccccagca ccagaagcgc cagcaatccc
     8521 gccagccagt aaacgccgct ggcctgtaac gcatcactca tagcgataag cgcacgggtg
     8581 gaggagggta gcgcgtgtcc gagatgatca aactgttcga tgattttcgg caccactgcc
     8641 gtcagcaaaa tagtgaccac gcccgttgcc accaccagca taaccagcgg atagagcatg
     8701 gcctgcaata gacgtgattt caggcgctgt cgctgttcgg tgtaatctgc caggcgattg
     8761 agcaccacgt cgagatgccc ggatttttct ccggcagcga ccatcgaaca aaacagggaa
     8821 tcaaagacgc ggggatgttc gcgcaggctg tccgacaggg tataaccttc ctgaatccgg
     8881 ctgcgcagcg ccattccgag gctcttcaca tgcagttttt cactttgctc actgaccgcc
     8941 tgcaagcagg tttccaacgg cattgctgcc tgcaccagcg ttgccagttg gcgcgtgaac
     9001 agcgccagat ctgccgccgc cacgcgacga tgtgcgtgcc gccgacgctg caacattccc
     9061 cctgccgatg cattcatcct ggcttcaatg tgcacgggga taagctcttt accgcgcaac
     9121 aactggcggg catgacgcgc ggaatccgcc tcaatcatgc ctttggtttt gcgaccatta
     9181 cgctccagcg cctgatagta aaacagtgcc attacgcctc catggttacc cgcagaactt
     9241 catcgagaga ggtttctccg gcgagcactt tctcaatgcc gttgctgcgg atacccgcag
     9301 agtgttgccg gacataacgt tccagctcca gctccccggc ctgacggtgg atcaaatcac
     9361 gcaatgtggc atccaccacg tcagctcatg gatggcagtc cgtccgcgga aacctttgtg
     9421 attacaggcg gggcagccct gcggatggta cagagtgacg gttcgcgcat cggtaatgcc
     9481 cagcaggcgt ttttcttcgt cagtggcagg cgcggcctga cggcagtcgg gacacagcgt
     9541 gcggaccagt cgctgcgcca tcacgcccgt cagactggaa gagagcagga aaggctccac
     9601 gcccatatcc tgcaaacgcg tgatcgcccc caccgccgtg ttggtatgca gcgtggaaag
     9661 gaccaggtgt ccggtaagcg atgcctgaac agcgatttct gcggtttcgg tatcgcggat
     9721 ttcaccgacc atcaccacat ccgggtcctg acgcaaaatc gcgcgcaggc cacgggcgaa
     9781 ggtcatgccg acgcgggtgt taacctgtgt ctgaccgatc ccttcaatca tgtattcgat
     9841 ggggtcttca accgtgagaa tgttacgcga atggttgttc agctcctgca atccggcgta
     9901 cagcgtggtg cttttgccgg aacccgtcgg ccccgtcacc agaaagatgc cgtgcggttt
     9961 gtgtaacagc tggcgcaact gcacggtcag ttgctggcta agccccagac gctccagcgt
    10021 caggcgggcc tggtttttgt ccagcagtcg cagcaccacg cgctcgcccc aggcagaagg
    10081 catggtggag acacgcacgt caatcgcccg gccgcccagc agcagcgcaa tacgtccatc
    10141 ctgcggtacg cgcttttcgg cgatatccag ccgtgccatc accttgatac gcgataccag
    10201 cagcgaggcc agtttgcgcc ccgggcgcag catttcatgt aatgtgccgt caacgcgaaa
    10261 acggatcacc agactctttt caaacgtctc gatgtggata tccgaagcgc cttctttaat
    10321 cgcctctgcc agcatggcgt tgatcagttt gatgatcggc gcatcgtcgt cactttccag
    10381 cagatcttcc gtttctggca gttcttccgc gagagtaaaa aagtcctcag cagaaccgag
    10441 atcttccatc agctggcgag cctcggaaga gtcccgctgc cagaccgcat tcagccgctg
    10501 ttcaaattcg gcctcgtcga tttgccgcag cgtaaagggc gcgttcagcc cccgctgcag
    10561 ctcctgcaaa acagagagcg atagcggatg aacgtggagg atctccagcg acgcttcgca
    10621 ccatgccacc aggctaaacc gacggctgaa actgtagggc agacgcacgg tcttggcggt
    10681 ggtttcctgt gctacaggca ccattaacgc gttctcccgg cattgaggaa cgcgcgaact
    10741 tccggcggta aggcctggtt ttgcgctggc agtaccggct gtgcggtgtg cggcatcagg
    10801 cttaaacctt gctcatcacg atagatctgt tcggcgcgca tatagttata tttgcgctgc
    10861 gacacgccgt ctgccgccat accgtcatgc agaatggtcg ggcggataaa caccatcagg
    10921 ttacgttttt cttttttatc cgccgtcgat ttaaacaggt taccaatcaa tgggatatcg
    10981 cccagcagag gcactttcgc cacgctttct cccgcctgat cgtccatcag accaccaagc
    11041 acaatcagct caccatcgtt agccagcacg gtggttttca gtttgcgctc accaaacacc
    11101 acgtcgaggc tggtctgtcc ttccaccttc gagacttcct gctcaatcac catctgtacc
    11161 gcgttacctt cgttaatctg cggcgtgact ttcagcatga tgccgacttt tttcctttct
    11221 actgtattga aaggattgct gttattggag ccaacggtag agccggttaa taccggaacg
    11281 tcctagccca ccatgaagaa ggcttcctgg ttgtccagcg tagtgatgct cggcgtggag
    11341 agaacgttcg agctggagtc gtttttaacc gcctgcacca gtgccatcca gtcgcctttc
    11401 accacgccaa ccgccgtacc gctaaatcca gaaagaagct gggcgagtgt ggagagatcg
    11461 ccgttggtat ccggattaat ggtggtagcg ccgttttcac tgatcaccgt cgagcctttc
    11521 tgcggtttcg cctgagaaat ggctgccccc agcgtaccga tagggatctg cgtaccatta
    11581 gcaaactgca ttaatccggc atctttcgac gcccactgca cgccgaagtt gatattgcta
    11641 ccttcggcaa cttccacgat caacgcctcg acgtgcacct gagcacggcg aatatccagt
    11701 tgttcaatta cgctttgcag cgactgcatg atgtcctgcg gcgcggttac aatcagggca
    11761 ttactgtgtt tgctggcggc gatggataca acctcacgcc cgctaccgac cgtgccttcc
    11821 gcctcttctt tagccgccgt gagcgtgccg ctgacctgtt tcagcacatc gaccagatct
    11881 tcggctttgc tgtatttgag atagaaaacc tggctgttgc cgctgcgttc catttctgag
    11941 tccagccgac ggatcaggcg gcgcattttg tcccgcgtgg ccgggtcacc actgacaatc
    12001 acactgttgg tgcgttcgtc ggcgacaatt tgagatttca gcgtcgcagg ctggttctcg
    12061 ccgctgtttt tcgtcaggct ttccagcacg cgggcgattt ccgaagccga ggcgttatcc
    12121 agcgggatca cctcttcggt gcgattaccc gcgtgatcca cgcgctggat cacttccgtc
    12181 aggcgctcca caacggaggc gcgtccggtg agcataatca cgttggaggg atcgtaatta
    12241 acaacgttgc ctgagcctgc gctgtcgatc atctggcgca gaatcggtgc cagctcgcgt
    12301 accgacacat tacgtaccgg cactactttg gtgaccattt catcgcccgc gtagttgtcg
    12361 ctgccttcac cgaccagcgg cagcggctcg actttcgcag cgctggattt caccaccttc
    12421 agcacgtcgt tttccatcgg tacgacggca tacccctgtg cttccagcag gttaaggaat
    12481 agctggtaat actggcgttc attgagcggg gtcatggtgc gaatactcac tttcccctgt
    12541 acgcccggcc ccataatgat ggttttatta aggttagcgc cgacggtttc gatgaacgat
    12601 ttcaggtcgg tatctttaaa attagcggtg aaagtggctt cttccgccca gaccggtgaa
    12661 ctgcataatg ccgctgccag caccagcggc agtaaacgct tttttgtttt gaggccagtt
    12721 gtcttcttac gccagaccga caacgtaata tcacgccaaa acacgatgaa tgattctcct
    12781 ggattaaatg cggttagcgc agcgcgatgg aaatgtcgtg gcgcgcaccc ttgcgtaaaa
    12841 ccgtaagttg aatggaatcc attgaaggta actgccgcat cagagcaatc attgctcgtg
    12901 gatcagtgaa atcctgctga tttagcgcaa tggcgatatc gccttccttg aaaccgctgg
    12961 catcgaacag agaacgatct gcccccggct tcactgcata accgacaatt ccctccttac
    13021 gcacaggcgt aagctggata tagttaaaaa ttttctgcgg atctttcgcc agtgcctgac
    13081 gcacggcagt cggtatctca actggcgcac tgacagcagg ttcagcaaca gcttgctttg
    13141 cttcgtcact gacagctttt ttgttggtcg cggcaacggt ggaacgctcc tcttcagcca
    13201 ggctcaggcg ctctattttt ccctgatagc gcagcatcac atggtcgcga ttgatttcct
    13261 caatcaccgc gttgtgcgag ccaagcgttt caccctgcaa atagacctgc tgtttaccgc
    13321 cttcttcaat aaccgcgccg ggtctggcac caaaggcgat cccgcgcgca ccacattaag
    13381 acgcgtttct gccacaggca caggttcggg ttgttttacc ggcgtggcga cgggctgata
    13441 tttgccaaac cagttttgct ggctgattaa ttgcacgtca tttttatcga acgtttttgc
    13501 atccgcacgg ggcggtttat tcgccgatgg ggaaacagcc gtatattccg cagaaaagga
    13561 gaaatagcgc cagagtgaat gcgccacttt tgcagaaata ataagcagca tcagccagaa
    13621 catcccgcgt acaatttt
//
LOCUS       DAJVSY010000107        13588 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.107, whole genome shotgun sequence.
ACCESSION   DAJVSY010000107 DAJVSY010000000
VERSION     DAJVSY010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13588)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13588)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13588
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.107"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            1..344
                     /locus_tag="OQQ19_002852"
                     /pseudo
     CDS             1..344
                     /locus_tag="OQQ19_002852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
     gene            515..862
                     /locus_tag="OQQ19_002853"
     CDS             515..862
                     /locus_tag="OQQ19_002853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YidH family protein"
                     /protein_id="HCS1804403.1"
                     /translation="MKISRLGEAPDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAP
                     DFATPVIRELLALLLCLFSGGLAMYGYLRWLRNEKAMRLKEDLPYTNSLLIISLILMV
                     VAVIVMGLVLYAG"
     gene            852..1214
                     /locus_tag="OQQ19_002854"
     CDS             852..1214
                     /locus_tag="OQQ19_002854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF202 domain-containing protein"
                     /protein_id="HCS1804404.1"
                     /translation="MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWH
                     QAGMLFWISIGILAIVALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAI
                     LFAVTHIHQLIVFIERVA"
     gene            1211..1708
                     /locus_tag="OQQ19_002855"
     CDS             1211..1708
                     /locus_tag="OQQ19_002855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HCS1804405.1"
                     /translation="MTGSQVIDAEEDRHKLVVEYKDALQPADFYHNFKQRGIRSVQLI
                     PYLEFDDRGDLTAASVTAELWGKFLIALFECWVRADISRISIELFDATLQKWCGGENP
                     QPRRDCQACDWHRLCPHARQETPDSVLCAGYQAFYSYSAPHMRVMRDLIKQHRSPMEL
                     MTMLR"
     gene            complement(1716..2900)
                     /gene="emrD"
                     /locus_tag="OQQ19_002856"
     CDS             complement(1716..2900)
                     /gene="emrD"
                     /locus_tag="OQQ19_002856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418129.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter EmrD"
                     /protein_id="HCS1804406.1"
                     /translation="MKRQRNVNLLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGA
                     VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAA
                     SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN
                     WRACYLFLLVLCVGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIG
                     GLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ
                     SVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFLFLAGT
                     AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVLCWLPLATLMSHQGQ
                     PV"
     gene            complement(3319..3408)
                     /gene="tisB"
                     /locus_tag="OQQ19_002857"
     CDS             complement(3319..3408)
                     /gene="tisB"
                     /locus_tag="OQQ19_002857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin TisB"
                     /protein_id="HCS1804407.1"
                     /translation="MSLVDIAILILKLIVAALQLLDAVLKYLK"
     gene            3973..4071
                     /gene="ivbL"
                     /locus_tag="OQQ19_002858"
     CDS             3973..4071
                     /gene="ivbL"
                     /locus_tag="OQQ19_002858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ilvB operon leader peptide IvbL"
                     /protein_id="HCS1804408.1"
                     /translation="MTTSMFNAKLLPTALSAAVVVVRVVVVVGNAP"
     gene            4177..5865
                     /gene="ilvB"
                     /locus_tag="OQQ19_002859"
     CDS             4177..5865
                     /gene="ilvB"
                     /locus_tag="OQQ19_002859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HCS1804409.1"
                     /translation="MASSGTTSTRKRFTGAEFIVHFLEQQGIKIVTGIPGGSILPVYD
                     ALSQSTQIRHILARHEQGAGFIAQGMARTDGKPAVCMACSGPGATNLVTAIADARLDS
                     IPLICITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRHIEELPQVMSDAFRIAQS
                     GRPGPVWIDIPKDVQTAVFEIETQPAMAEKAAAPAFSEESIRDAAAMINAAKRPVLYL
                     GGGVINAPARVRELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGVRSTNYILQEA
                     DLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQL
                     IPQVEAQPRAEWHQLVADLQREFPCPIPKACDPLSHYGLINAVAACVDDNAIITTDVG
                     QHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPDRKVLCFSGDGSLMMN
                     IQEMATASENQLDVKIILMNNEALGLVHQQQSLFYEQGVFAATYPGKINFMQIAAGFG
                     LETCDLNNEADPQAALQEIINRPGPALIHVRIDAEEKVYPMVPPGAANTEMVGE"
     gene            5869..6159
                     /gene="ilvN"
                     /locus_tag="OQQ19_002860"
     CDS             5869..6159
                     /gene="ilvN"
                     /locus_tag="OQQ19_002860"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HCS1804410.1"
                     /translation="MQNTTHNNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPI
                     QDSDKSHIWLLVNDDQRLEQMISQIDKLEDVVKVQRNQSDPTMFNKIAVFFQ"
     gene            6233..6823
                     /gene="uhpA"
                     /locus_tag="OQQ19_002861"
     CDS             6233..6823
                     /gene="uhpA"
                     /locus_tag="OQQ19_002861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator UhpA"
                     /protein_id="HCS1804411.1"
                     /translation="MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP
                     GRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKR
                     CSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
                     ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW"
     gene            6823..8325
                     /gene="uhpB"
                     /locus_tag="OQQ19_002862"
     CDS             6823..8325
                     /gene="uhpB"
                     /locus_tag="OQQ19_002862"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418124.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal transduction histidine-protein
                     kinase/phosphatase UhpB"
                     /protein_id="HCS1804412.1"
                     /translation="MKTLFSRLITVIACFFIFSAAWFCLWSISLHLVERPDMAVLLFP
                     FGLRLGLMLQCPRGYWPVLLGAEWLLIYWLTQAVGLTHFPLLMIGSLLTLLPVALISR
                     YRHQRDWRTLLLQGAALTAAALLQSLPWLWHGKESWNALLLTLTGGLTLAPICLVFWH
                     YLANNTWLPLGPSLVSQPINWRGRHLVWYLLLFVISLWLQLGLPDELSRFTPFCLALP
                     IIALAWHYGWQGALIATLMNAIALIASQTWRDHPVDLLLSLLVQSLTGLLLGAGIQRL
                     RELNQSLQKELARNQHLAERLLETEESVRRDVARELHDDIGQTITAIRTQAGIVQRLA
                     ADNASVKQSGQLIEQLSLGVYDAVRRLLGRLRPRQLDDLTLEQAIRSLMREMELEGRG
                     IVSHLEWRIDESALSENQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVIE
                     DDGSGLPPGSGQQGFGLTGMRERVTALGGTLHISCLHGTRVSVSLPQRYV"
     gene            8335..9654
                     /gene="uhpC"
                     /locus_tag="OQQ19_002863"
     CDS             8335..9654
                     /gene="uhpC"
                     /locus_tag="OQQ19_002863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418123.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter family glucose-6-phosphate
                     receptor UhpC"
                     /protein_id="HCS1804413.1"
                     /translation="MLPFLKAPADAPLMTDKYEIDARYRYWRRHILLTIWLGYALFYF
                     TRKSFNAAVPEILANGVLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL
                     IATGIINILFGFSTSLWAFAVLWVLNAFFQGWGSPVCARLLTAWYSRTERGGWWALWN
                     TAHNVGGALIPIVMAAAALHYGWRAGMMIAGCMAIVVGIFLCWRLRDRPQALGLPAVG
                     EWRHDALEIAQQQEGAGLTRKEILTKYVLLNPYIWLLSFCYVLVYVVRAAINDWGNLY
                     MSETLGVDLVTANTAVTMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVG
                     SLWLMPFASYVMQATCFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLG
                     ASLAGWPLAKVLDTWHWSGFFVVISIAAGISALLLLPFLNAQTPREA"
     gene            9792..11183
                     /gene="uhpT"
                     /locus_tag="OQQ19_002864"
     CDS             9792..11183
                     /gene="uhpT"
                     /locus_tag="OQQ19_002864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexose-6-phosphate:phosphate antiporter"
                     /protein_id="HCS1804414.1"
                     /translation="MLAFLNQVRKPTLDLPLEVRRKMWFKPFMQSYLVVFIGYLTMYL
                     IRKNFNIAQNDMISTYGLSMTQLGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFML
                     ILSAICMLGFSASMGSGSVSLFLMIAFYALSGFFQSTGGSCSYSTITKWTPRRKRGTF
                     LGFWNISHNLGGAGAAGVALFGANYLFDGHVIGMFIFPSIIALIVGFIGLRYGSDSPE
                     SYGLGKAEELFGEEISEEDKETESTDMTKWQIFVEYVLKNKVIWLLCFANIFLYVVRI
                     GIDQWSTVYAFQELKLSKAVAIQGFTLFEAGALVGTLLWGWLSDLANGRRGLVACIAL
                     ALIIATLGVYQHASNEYIYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGAADGIKG
                     TFAYLIGDSFAKLGLGMIADGTPVFGLTGWAGTFAALDIAAIGCICLMAIVAVMEERK
                     IRREKKIQQLTVA"
     gene            complement(11228..12994)
                     /gene="adeD"
                     /locus_tag="OQQ19_002865"
     CDS             complement(11228..12994)
                     /gene="adeD"
                     /locus_tag="OQQ19_002865"
                     /EC_number="3.5.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine deaminase"
                     /protein_id="HCS1804415.1"
                     /translation="MNNSINHKFHHISRAEYQELLAVSRGDAVADYIIDNVSILDLIN
                     GGEISGPIVIKGRYIAGVGAEYADAPALQRIDARGATAVPGFIDAHLHIESSMMTPVT
                     FETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCD
                     VNGASFTLEQMLAWRDHPQVTGLAEMMDYPGVISGQNALLDKLDAFRHLTLDGHCPGL
                     GGKELNAYITAGIENCHESYQLEEGRRKLQLGMSLMIREGSAARNLNALAPLINEFNS
                     PQCMLCTDDRNPWEIAHEGHIDALIRRLIEQHNVPLHVAYRVASWSTARHFGLNHLDL
                     LAPGKQADIVLLSDARKVTVQQVLVKGEPIDAQTLQAEESARLAQSAPPYGNTIARQP
                     VSASDFALQFTPGKRYRVIDVIHNELITHSHSSVYSENGFDRDDVCFIAVLERYGQRL
                     APACGLLGGFGLNEGALAATVSHDSHNIVVIGRSAEEMALAVYQVIQDGGGLCVVRNG
                     QVQSHLPLPIAGLMSTDTAQSLAEQIDALKAAARECGPLPDEPFIQMAFLSLPVIPAL
                     KLTSQGLFDGEKFVFTTLEVTE"
     gene            13169..>13588
                     /gene="adeQ"
                     /locus_tag="OQQ19_002866"
                     /gene_synonym="yicO"
     CDS             13169..>13588
                     /gene="adeQ"
                     /locus_tag="OQQ19_002866"
                     /gene_synonym="yicO"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418120.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine permease AdeQ"
                     /protein_id="HCS1804416.1"
                     /translation="MNNDNTDYVSNESGMLSRLFKLPQHGTTVRTELIAGMTTFLTMV
                     YIVFVNPQILGAAQMDPKVVFVTTCLIAGIGSIAMGIFANLPVALAPAMGLNAFFAFV
                     VVGAMGISWQTGMGAIFWGAVGLFLLTLFRIRYWMISN"
BASE COUNT         3030 a         3529 c         3792 g         3237 t
ORIGIN      
        1 gccggggcgc aatgtccggg caaaatcagg tttaaaccgt tcgatactgg atcagggctg
       61 gtatgaaatg cgccgccagc ttgagtacaa gcagctctgg agtggcggtc aggtgcttgc
      121 tgttccgcca gcgttgcgcg tgctgtggtc atacagcgaa agaaaatcgc ctgtcacaaa
      181 gtaaattcag atgccaggta tgtggatata cagcgaacgc cgatgtaaat ggcgctcgta
      241 acattttagc ggcggggcac gccgttcttg cctgtggaga gatggtgcag tcaggccgcc
      301 cgttgaagca ggaacccacc gaaatgattc aggcgacagc ctgaacgtag cagggatcct
      361 cgtccttcag ggcgtggagg atgtcaattt gcgctatgat acccatctga cctccttgta
      421 gcggatggca aaagcatatc aggaaacggg cggacgaaat tcttaaaaaa aaccgctaaa
      481 gatagagcgt tagtgaaatt gcaaaggagc aacaatgaaa atttcccgcc ttggagaagc
      541 gcccgattac cgcttctcgc tggctaatga gcgtactttt ctggcgtgga tccgtaccgc
      601 actaggattt ctggcggcgg gggttgggct tgatcaactt gcgccagatt tcgccacgcc
      661 cgtcattcgt gaactgctgg cgttgttgtt gtgtctgttt tccggcgggt tagcaatgta
      721 tggctacctg cgctggttac gcaatgaaaa agcgatgcgt ctgaaagagg acctgcccta
      781 caccaacagc ttattaatca ttagcttaat attgatggtc gtggcggtga tcgttatggg
      841 actggtgttg tatgccggat agccgcaaag ccagacgcat tgccgaccca ggactgcagc
      901 cggagcgcac atcactggcg tggtttcgta ccatgctggg ctacggcgcg ttgatggcgt
      961 tggctatcaa acacaactgg caccaggcgg gcatgttatt ctggatttcg attggcattc
     1021 tcgccatcgt ggcgctgatc ctctggcact acacccgtaa tcgcaattta atggatgtca
     1081 cgaatagcga tttttcccaa tttcacgtag tccgtgacaa atttttgatc tccctcgcgg
     1141 tgttatctct cgcaatactg tttgctgtaa cgcatataca tcaacttatc gtatttattg
     1201 agagagtcgc atgacaggaa gtcaggtcat tgatgctgaa gaggacaggc ataaactggt
     1261 tgtagagtac aaggatgctc tgcaacctgc cgatttttat cacaatttca aacagcgggg
     1321 catccgctcc gtacagctca ttccctatct tgaatttgat gaccggggcg atctgacggc
     1381 cgcttcggtg acagcagagc tgtgggggaa atttttaatt gccctgttcg agtgttgggt
     1441 gcgggcagat atcagtcgta tctcgattga gctttttgac gccaccttac aaaaatggtg
     1501 tggcggcgaa aacccgcaac cgcgccgtga ctgccaggcg tgcgactggc atcgcctgtg
     1561 cccgcacgct cggcaggaga cgccagacag cgtgctttgt gcgggctatc aggcgtttta
     1621 ttcttactcc gcaccgcata tgcgggtgat gcgtgatctg ataaagcagc atcgttctcc
     1681 catggagctg atgacgatgc tgcggtgacg tgcgcttaaa cgggctgccc ctgatgcgac
     1741 atcagcgtcg ccagcggcag ccagcacagc acgatcaaca atcccattaa ggtcatcaat
     1801 aaccccaggc taccctgacc ggtttgcggc aacatcgcag agagcgacgc cagcacgccg
     1861 gaaccaatgt tttgcagacc gccgaccagc gcgccagccg tgcccgccag gaagaggaac
     1921 ggctccatcg cgccgctggt cgccagcgga aacagcatcc cggcaccgaa aaagaacagc
     1981 gcggcgggaa cgagcagcgt ccagacattc atcacgccaa accagtcggg gatccacatc
     2041 agcaagccag ccagcaggca gcagataacc gactgccaca ttaacgtgga gaagcgttta
     2101 ttgggacgtc cggcaaacca tgcgccaaaa aacgctgccg gaatcggcag aataaacaaa
     2161 atactgaccg tcatactgct cagccctaac accgcgccca tcagcacgcc ggagcaggct
     2221 tcaaaggcgg caatcccggc cagaccgcca atcagcatca gcaaataaca gttaaaaccg
     2281 ctgttaccga aaagcgtttt ataactggta agcaggcgcg tgcgcggtgc atcgaccgga
     2341 cgcgtttccg gcatccagcg ggccatactg aaggtcacac caacacaaag aaccaacaaa
     2401 aagagataac aggcgcgcca gttccacatc gtatccagca gaccgccgat tagcggtgcg
     2461 agcaacggac tgacgagaat ccccatgttt aacaggctgt tagcatggcg caactgtgtc
     2521 cgttcatata aatctcgcgg caaagtacgc gccattacgc cgccaacgcc ggtgcccatc
     2581 ccctgcatcg cgctggcggc aatcaatacc gtcaaactgg aggtcgtgac cgcgaccagc
     2641 gttgccagca taaaaatgga cattccgacg aggatcaccg gtcggcgacc cacacggtcg
     2701 gaaatcgggc cataaaacag ctgtgagaca ccgtaagtca gcagataagc gcccattacg
     2761 ctctgcaccg ccccttcacg gacgttgaga tcgcgcgcca tatcggcaat agctggaata
     2821 taaatggttt gcgccatctg accgacggcc acgagtaata ccaacatcaa taacaaattg
     2881 acgtttcttt gccttttcat tatcacggat gcttttataa aaataattag aataagtcac
     2941 tacgcattcc cataaatgcg ggagaggaat ctatcacatt gatgaatgtt agccagatat
     3001 acgccaggaa tggggaattg tttagcggca gaatatgtaa acaaaagcgg caataaatgt
     3061 tgccgggagg gattacgtgc gaactgtaac cctctcccca aaggggcgag ggggaaacca
     3121 ccgttccctt tcagaaaatg agctaaacat tgcacgggac ggtcccctcg cccctttggg
     3181 gagagggcta gggtgagggg cacaggcagc gcaggtgcaa acattctgct ggtagaagaa
     3241 gcccccaact ccaacccgca cgctaaatat aaaaggggag cggttacccg ctcccctttg
     3301 gtgcgacttg aatctgaatt acttcaggta tttcagaaca gcatcaagca gttgcagtgc
     3361 tgcaacaatg agtttgagga taagaatggc gatatccacc aggctcatac gcgtctcctg
     3421 tggttcagga gcactgccag ctgacgtacc tttccgctgc ctgttgccag ctgttgtgca
     3481 cgcggtatct caaggagaaa cgttgtgctt gttgacataa cacagtgtgc tcacgcgggg
     3541 ttaaggcgct gacggcacca cccgtttcag ccaggactta gtgcgccggg taacgatgcg
     3601 gcccccgcat aatacattgc gtacagtgat attatagaag tttactgtat aaataaacag
     3661 tgatatttgg acaaaacgca aactgtgatc gatactcaac tatgccctaa atacgtcaaa
     3721 attcgtgccg aaattgcgcg ttctgcgcgg aacacgtata ctttcagtgt tgacataata
     3781 cagtgtgctt tgcggttacc agctgcaggc ggctgatgaa acctcgctcc ggcggggttt
     3841 tttgttacct gcaattcagt acaaaacgtg atcagcccct caattttccc ttgctgaaaa
     3901 attttccatt gtctcccctg taaagctgtg cttgtataaa tattgttaaa cacaaaacca
     3961 acaaggtccc caatgactac ttccatgttc aacgcaaaac tactaccaac tgcgctatcc
     4021 gccgcagtgg tcgtcgtgcg tgtggtggtg gtcgtcggca atgcgccgta gggactggaa
     4081 caacacacga ttccaaaacc ccgccggcgc aaaccgggcg gggtttttcg tttaagcacc
     4141 tcccggaaag tcggcccaga agaaaaggac tggagcatgg caagttcggg cacaacatcg
     4201 acgcgtaagc gctttaccgg cgcagaattt atcgttcatt tcctggaaca gcagggcatt
     4261 aagattgtga cgggcattcc gggcggttct atcctgcctg tttacgatgc cttaagccaa
     4321 agcacgcaaa tccgccatat tctggcccgt catgaacagg gcgcgggatt tatcgctcag
     4381 gggatggcgc gcaccgacgg taaaccggcg gtctgtatgg cctgtagcgg accgggtgcg
     4441 actaacctgg tgaccgccat tgccgatgcg cggctggact ccatcccgct gatttgcatc
     4501 accggtcagg ttcccgcctc gatgatcggc accgacgcct tccaggaagt ggacacctac
     4561 ggcatctcta tccccatcac caaacacaac tatctggtca gacatatcga agaactcccg
     4621 caggtcatga gcgatgcctt ccgcattgcg caatcaggcc gcccaggccc ggtgtggata
     4681 gacattccta aggatgtgca aacggcagtt tttgagattg aaacacagcc cgctatggca
     4741 gaaaaagccg ccgcccccgc ctttagtgaa gaaagcattc gtgacgcagc ggcgatgatt
     4801 aacgctgcca aacgcccggt gctttatctg ggcggcggtg tgatcaatgc gcccgcacgg
     4861 gtgcgtgaac tggcggagaa agcgcaactg cctaccacca tgactttaat ggcgctgggc
     4921 atgttgccaa aagcgcatcc gttgtcgctg ggtatgctgg ggatgcacgg cgtgcgcagc
     4981 accaactata ttttgcagga ggcggatttg ttgatagtgc tcggtgcgcg ttttgatgac
     5041 cgggcgattg gcaaaaccga gcagttctgt ccgaatgcca aaattattca tgtcgatatc
     5101 gatcgcgcag agctgggtaa aatcaagcag ccgcatgtgg cgattcaggc ggatgttgat
     5161 gacgtgctgg cgcaattgat cccgcaggtg gaagcgcaac cgcgtgcaga gtggcaccag
     5221 ttggtagcgg atttgcagcg cgaattcccg tgtccaatcc cgaaagcgtg cgatccatta
     5281 agccattacg gcctgatcaa cgccgttgcc gcctgtgtcg atgacaatgc gattatcacc
     5341 accgatgtgg gtcagcatca gatgtggacc gcgcaagctt atccgctcaa tcgcccacgc
     5401 cagtggctga cctccggtgg gctgggcacg atgggttttg gcctgcctgc ggcgattggc
     5461 gcggcgctgg cgaacccgga tcgcaaagtg ttgtgtttct ccggcgacgg cagcctgatg
     5521 atgaatattc aggagatggc gaccgccagt gaaaatcagc tggatgtcaa aatcattctg
     5581 atgaacaacg aagcgctggg gctggtgcat cagcaacaga gtctgttcta cgagcaaggc
     5641 gtttttgccg ccacctatcc gggcaaaatc aactttatgc agattgccgc cggattcggc
     5701 ctcgaaacct gtgatttgaa taacgaagcc gatccgcagg ctgcattgca ggaaatcatc
     5761 aatcgccctg gcccggcgct gatccatgtg cgcattgatg ccgaagaaaa agtttacccg
     5821 atggtgccgc caggtgcggc gaatactgaa atggtggggg aataagccat gcaaaacaca
     5881 actcataaca acgtaattct ggagctcacc gttcgcaacc atccgggcgt aatgacccac
     5941 gtttgtggcc tttttgcccg ccgcgctttt aacgttgaag gcattctttg tctgccgatt
     6001 caggacagcg acaaaagcca tatctggcta ctggtcaatg acgaccagcg tctggagcag
     6061 atgataagcc aaatcgataa gctggaagat gttgtgaaag tgcagcgtaa tcagtccgat
     6121 ccgacgatgt ttaacaagat cgcggtgttt tttcagtaac cgctcaaggc ttgaacaaca
     6181 tcgcgcttat cgttaaggta agcgcgtttt ttttacccgc caggacaaga ccatgatcac
     6241 cgttgccctt atagacgatc acctcatcgt ccgctccggc tttgcgcagc tgctggggct
     6301 ggaacctgat ttgcaggtag ttgccgagtt tggttcgggg cgcgaggcgc tggcggggct
     6361 gccggggcgc ggtgtgcagg tgtgtatttg cgatatctcc atgcccgata tctccggtct
     6421 ggagctgcta agccagctgc cgaaaggtat ggcgacgatt atgctctccg ttcacgacag
     6481 tcctgcgctg gttgagcagg cgcttaacgc gggggcacgc ggctttcttt ccaaacgctg
     6541 tagcccggat gaactcattg ctgcggtgca tacggttgcc acgggcggct gttatctgac
     6601 gccggatatt gccattaaac tggcatccgg tcgtcaggac ccgctaacca aacgtgaacg
     6661 ccaggtggcg gaaaaactgg cgcaaggaat ggcggtgaaa gagattgccg ccgaactggg
     6721 cttgtcaccg aaaacggtac acgtccatcg cgccaatctg atggaaaaac tgggcgtcag
     6781 taacgacgta gagctggcgc gccgcatgtt tgatggctgg tgatgaagac gttgttctcc
     6841 cgcttaatta ccgttattgc ctgctttttt atcttctctg ccgcatggtt ttgcctgtgg
     6901 agtatcagcc tgcatctggt tgagcgccct gatatggcgg tgctgttatt tccgtttggt
     6961 ctgcgtctgg ggctaatgct gcaatgcccg cgcggatact ggccggtgct gctgggcgcg
     7021 gagtggctgc tgatttactg gctaacgcag gcggtcggtt taacccattt tccgttattg
     7081 atgatcggta gtttactgac gttactgccc gtagcgctga tctcgcgcta tcgccatcag
     7141 cgtgactggc gcaccttgct gttacagggg gcggcgttaa cggcggcggc gttgttgcag
     7201 tcgctgccct ggctttggca cggcaaagag tcgtggaatg cgctgttgct gactttaact
     7261 ggcggcctga cgctggcccc gatatgtctg gtgttctggc actatctcgc caataacacc
     7321 tggctgccgc tcggcccgtc actggtttct cagccaatca actggcgcgg gcgacatctg
     7381 gtctggtact tgctgctgtt tgttatcagt ctctggctcc agttgggatt gccggacgaa
     7441 ctgtcgcgct ttacgccatt ctgtctggcg ctgccgatta tcgcgctggc ctggcactat
     7501 ggttggcaag gggcgctgat tgcgacgttg atgaacgcca tcgcgctgat cgccagtcaa
     7561 acctggcgcg atcatccggt ggatttattg ctctcgctgc tggtgcaaag tctgacaggg
     7621 ttgttgcttg gcgctggcat ccagcggttg cgtgaactta accagtcgct gcaaaaggaa
     7681 ctggcgcgca atcagcatct ggctgaacgg ttgctggaaa ccgaagagag cgtgcgccgt
     7741 gatgtggcgc gtgagctgca tgatgatatc ggtcagacca tcactgctat tcgtactcag
     7801 gcgggcattg ttcagcggct ggcggcagat aacgccagcg tgaagcagag cgggcagctc
     7861 atcgaacaac tatcgctggg cgtttacgac gcggtgcgcc gtttgttggg tcggttacgt
     7921 ccgcgccagt tggatgatct caccctggag caggccatcc gctcactgat gcgggaaatg
     7981 gagctggaag ggcgcggtat tgtcagccat ctcgaatggc gaatcgatga atcagcgtta
     8041 agcgaaaacc agcgcgtaac gctgtttcgt gtctgccagg aagggctgaa caacattgtg
     8101 aaacatgctg atgccagcgc ggtcaccctg caaggctggc agcaggatga acggttgatg
     8161 ctggttattg aagacgatgg cagcggtttg ccgccgggtt ccgggcaaca aggttttggc
     8221 ctcaccggaa tgcgcgagcg cgtaacggcg ctgggtggca cattacacat ttcctgtctg
     8281 cacggcacgc gtgtcagcgt ttctctacct caacgctatg tctaaggttt gatgatgttg
     8341 ccgtttctga aagcgcctgc cgatgcgcca ttaatgactg ataaatatga aattgatgcc
     8401 cgctatcgct actggcgtcg gcatattctg ctgaccatct ggctgggtta cgcgctgttt
     8461 tacttcacgc ggaaaagttt taacgccgcc gtaccagaaa tccttgctaa cggcgtgctc
     8521 agccgtagcg atatcggcct gttagcgacc ctgttttaca ttacctatgg cgtgtcgaag
     8581 tttgtctccg gcattgtcag cgatcgctca aatgcccgtt attttatggg gatagggctt
     8641 atcgccacgg gcattatcaa cattctgttt ggcttctcga cgtcgctatg ggcgtttgca
     8701 gtactctggg tgctgaacgc ctttttccag ggctggggtt caccggtgtg tgcgcgtctg
     8761 ttaacggcct ggtattcacg taccgagcgc ggtggttggt gggcattatg gaacacggcg
     8821 cataacgtcg gcggcgcact cattcccatt gtgatggcag cggctgcact acattacggc
     8881 tggcgtgccg ggatgatgat tgctggttgt atggcgatcg tcgtgggaat ttttctctgc
     8941 tggcggctgc gcgatcgccc gcaggcgtta ggtttaccgg cggtcggtga atggcgacac
     9001 gacgcgctgg agatagctca acaacaagaa ggggcagggc tgacgcgtaa agagatcctc
     9061 accaaatatg tgttgctgaa tccgtatatc tggctgcttt cgttttgcta tgtgctggtc
     9121 tatgtggtcc gggcggcgat caacgactgg ggcaatttgt atatgtccga gacgctgggc
     9181 gtcgatctgg tcacggcgaa tacggcagtg acgatgtttg aactgggtgg atttatcggt
     9241 gcgctggtag cgggttgggg ctcggacaaa ttgtttaacg gcaaccgagg gccgatgaat
     9301 ttgattttcg ccgccggaat tttgctttca gtcggctccc tgtggctgat gccatttgcc
     9361 agctacgtga tgcaggcaac ctgcttcttc accattggtt tttttgtctt tggcccacag
     9421 atgttaatcg gtatggcggc ggcagagtgt tcccacaaag aggcggcagg ggcggcgacg
     9481 gggtttgtcg gcttgtttgc ttatctgggg gcgtcgcttg ctggttggcc gctggcgaaa
     9541 gtactcgata cctggcactg gagcggattt tttgtggtta tctctatcgc cgccgggatt
     9601 tccgcactgc tgttactgcc ctttttgaac gcccagacac cgcgcgaagc gtgatgcatc
     9661 tcaccttttc acttcatatc cggcaaaact aagaaatttt ccaggttttg cctggacgct
     9721 atctcaggcc tgatttgctg ctgattttta caatgcatgc ctcacgcagg tattcatttc
     9781 aggagtaacc catgctggct ttcctaaacc aggttcgcaa gccgaccctg gaccttccgc
     9841 tcgaagtgcg gcgcaaaatg tggttcaaac cgttcatgca atcctacctg gtggtcttta
     9901 tcggctacct gacgatgtac ctgattcgca agaactttaa catcgcgcag aacgatatga
     9961 tttcgaccta cgggttgagc atgacgcagc tggggatgat cggcctgggt ttctccatca
    10021 cttatggcgt gggtaaaacg ttggtttcat actacgccga cggcaaaaac accaaacaat
    10081 tcctgccgtt catgctgatc ctgtctgcca tttgtatgct gggcttcagt gccagtatgg
    10141 gcagcggctc ggttagcctg ttcctgatga ttgccttcta cgccttaagc ggctttttcc
    10201 agagtaccgg cggttcgtgc agttactcca ccatcaccaa atggacgccg cgtcgtaaac
    10261 gcgggacatt cctcggtttc tggaatattt ctcacaacct tggcggtgca ggcgcagcag
    10321 gtgtggcgct gttcggggca aattacctgt tcgatggcca tgtcatcggc atgtttatct
    10381 tcccgtcgat tatcgcgctg attgtcggtt ttatcggcct gcgttacggc agcgactccc
    10441 cagaatctta tggcctcggc aaagctgaag aactgttcgg cgaggagatc agcgaagagg
    10501 acaaagagac agaatctacc gatatgacca agtggcagat ctttgttgag tatgtgctga
    10561 aaaacaaagt gatctggctg ctgtgcttcg ccaacatttt cctctatgtg gtacgtattg
    10621 gtatcgacca gtggtcaacc gtatacgcgt tccaggaact gaaactctct aaagcggtgg
    10681 cgattcaggg ctttacgctg tttgaagctg gtgcgctggt cggtacgctg ctgtggggct
    10741 ggctctctga cctggcgaac ggtcgccgtg gcctggtggc ctgcatcgcg ctggcgctga
    10801 ttatcgccac gctcggtgtg tatcaacatg ccagcaacga atatatctat ctggcttctc
    10861 tctttgcgtt gggtttcctg gtctttggcc cgcaattgtt gattggtgtg gctgctgttg
    10921 gctttgtacc taaaaaagcg attggcgctg ccgatggtat taaaggcacc tttgcttacc
    10981 tgattggtga cagctttgcc aagttaggtc tgggaatgat tgccgatggg acgccggtat
    11041 tcggccttac cggctgggca ggcaccttcg ccgcacttga tatcgccgcg attggttgta
    11101 tctgcctgat ggcgatagtg gcggtgatgg aagaacgcaa aatccgccgc gagaaaaaaa
    11161 ttcagcagtt gacagtggca taaacgtaac tggtgacttt tgcccggcat gacgccgggc
    11221 ttttttatta ttccgtgact tccagcgtag tgaagacaaa cttctcgcca tcaaatagcc
    11281 cctgactggt tagtttgagc gcggggatca ctggcagaga aagaaacgcc atctgaataa
    11341 acggctcatc gggtaacgga ccgcattcac gggcggcggc tttcaaggcg tcaatttgtt
    11401 ccgccagcga ctgcgccgtg tcggtgctca tcaggccggc aatgggcaac ggcagatgac
    11461 tttggacctg gccgttacgt accacgcaca gcccgccgcc atcctgaatc acctgataga
    11521 ccgccagcgc catctcttcg gcactgcgac cgatcaccac aatattatgg ctgtcatggc
    11581 tgaccgtcgc agccagcgca ccttcattca gtccaaagcc gccaagcaaa ccacaagccg
    11641 gagccagccg ttgcccgtaa cgctcaagta cggcaataaa gcacacatca tcgcgatcaa
    11701 aaccattttc gctgtagacg ctggagtggg agtgcgtaat caattcgtta tggatgacgt
    11761 caatgacccg atagcgtttt ccgggcgtaa attgcagggc aaagtcgctg gcggaaactg
    11821 gctggcgggc aatggtgttg ccatatggcg gagcggattg tgccagtctc gccgactctt
    11881 ccgcctgtaa ggtttgcgca tcaatcggct cgcctttcac cagtacctgc tgcaccgtga
    11941 ccttacgcgc atcgctcaac aggacgatat cggcctgctt gccgggtgcc agtaagtcga
    12001 ggtgattcag accaaagtgg cgcgccgtcg accagctggc gacgcgatat gccacatgca
    12061 gcggcacatt gtgttgttcg atcaggcggc gaattaaggc atcgatgtgt ccttcatggg
    12121 cgatctccca cgggttacgg tcatcggtac agagcatgca ttgcgggctg ttaaattcgt
    12181 tgatcaacgg tgccagcgcg ttgagattgc gggcagcgga cccttcgcgg atcatcaacg
    12241 acatgccgag ttgtaatttc cggcgtcctt cttccagctg ataactttcg tggcagtttt
    12301 caatacccgc agtaatatag gcgttaagtt ctttaccacc caaacccggg cagtgaccgt
    12361 ccagcgtcag gtggcgaaat gcatccagtt tatcgagcag cgcattctgc ccgctaatta
    12421 cgccagggta gtccatcatt tctgcaaggc cggtaacctg cggatggtcc cgccaggcga
    12481 gcatctgttc aagggtaaaa ctggcaccgt taacatcgca gccttccagg gcgggtacgc
    12541 aagagctgac ctgtaagtac tggttttgcc ttgcctgttc ggcacagcgg gcaaaccagg
    12601 cgaatccggc ttctcccatc acgttgacga tttcatgagg gtcgcaaata acggtcgtca
    12661 ggccgcgcgg cagggtagcg gtttcaaagg tgaccggcgt catcatgctg gattcaatat
    12721 gcaggtgagc atcaataaac cctggcaccg ccgttgcgcc gcgagcatca atccgctgca
    12781 aagccggagc atcagcgtat tctgcgccaa caccggcaat gtaacgtcct ttaatcacaa
    12841 ttgggccgga aatttctccg ccattgatca ggtcgagaat agagacatta tcaataatat
    12901 aatcggcaac agcgtcgcca cgggaaacgg ctaacaattc ctggtattca gcccggctaa
    12961 tgtgatgaaa tttatggtta atggaattat tcatattttt ctcattttga ttttatcaat
    13021 ttgattatta tttatcataa agaaacgtcg cgagattatt aaagaatatc tattaatgtg
    13081 caattgaaat gtgataatta tcactgaacc gttgttgtca tttgttttac aaaagcaagg
    13141 gattaaatct cctccaatgg acaaaaaaat gaataatgac aataccgatt acgtgagtaa
    13201 tgaatcaggg atgctttcgc gattatttaa actacctcag catgggacca ccgtccgcac
    13261 agaattgatt gcggggatga ccactttttt aaccatggtg tacatcgttt ttgtgaaccc
    13321 gcaaatcctc ggcgcggcac aaatggaccc gaaagtggtg tttgttacca cctgtttgat
    13381 tgccggtatc ggcagtattg cgatggggat atttgctaac ttacccgtgg cgctggctcc
    13441 ggcaatgggg ctgaacgcct tctttgcctt cgtggtcgtg ggggcgatgg gcatctcctg
    13501 gcagaccggg atgggcgcaa tattctgggg cgcagttgga ctatttttgc tcacgctgtt
    13561 tcgtatccgg tactggatga tctccaac
//
LOCUS       DAJVSY010000108        13584 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.108, whole genome shotgun sequence.
ACCESSION   DAJVSY010000108 DAJVSY010000000
VERSION     DAJVSY010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13584
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.108"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(241..1614)
                     /gene="cobA"
                     /locus_tag="OQQ19_002867"
     CDS             complement(241..1614)
                     /gene="cobA"
                     /locus_tag="OQQ19_002867"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HCS1804417.1"
                     /translation="MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLDAGARLTVNALA
                     FIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDTLNQRVSEAAEARRIFCNV
                     VDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLESLLPLHLGQVAKYAGQ
                     LRGRVKQQFTTMSERRRFWEKLFVNDRLAQSLANNDQKAITETTEQLINEPLDHRGEV
                     VLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHC
                     VPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAAS
                     GCSAYSGIPLTHRDYAQSVRLITGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQQ
                     KLIEHGMPGEMPVAIVENGTAVTQRVIDGTLTQLGELAQQMNSPSLIIIGRVVGLRDK
                     LNWFSNH"
     gene            complement(1633..2439)
                     /gene="nirC"
                     /locus_tag="OQQ19_002868"
     CDS             complement(1633..2439)
                     /gene="nirC"
                     /locus_tag="OQQ19_002868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026212.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite transporter NirC"
                     /protein_id="HCS1804418.1"
                     /translation="MFTDTINKCAANAARIARLSANNPLGFWVSSAMAGAYVGLGIIL
                     IFTLGNLLDPSVRPLVMGATFGIALTLVIIAGSELFTGHTMFLTFGVKAGSISHGQMW
                     AILPQTWLGNLVGSVFVAMLYSWGGGSLLPVDTSIVHSVALAKTTAPAMVLFFKGALC
                     NWLVCLAIWMALRTEGAAKFIAIWWCLLAFIASGYEHSIANMTLFALSWFGNHSEAYT
                     LAGIGHNLLWVTLGNTLSGAVFMGLGYWYATPKSNRPVADKFNQTETAAG"
     gene            complement(2566..2892)
                     /gene="nirD"
                     /locus_tag="OQQ19_002869"
     CDS             complement(2566..2892)
                     /gene="nirD"
                     /locus_tag="OQQ19_002869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase small subunit NirD"
                     /protein_id="HCS1804419.1"
                     /translation="MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISN
                     IDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDG
                     VVQLRG"
     gene            complement(2889..5432)
                     /gene="nirB"
                     /locus_tag="OQQ19_002870"
     CDS             complement(2889..5432)
                     /gene="nirB"
                     /locus_tag="OQQ19_002870"
                     /EC_number="1.7.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-nitrite reductase large subunit"
                     /protein_id="HCS1804420.1"
                     /translation="MSKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAY
                     DRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFY
                     DKLIMATGSYPWIPPIKGSDTQDCFVYRTIEDLNAIESCARRSKRGAVVGGGLLGLEA
                     AGALKNLGIETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGV
                     EARKTMRFADGSELEVDFIVFSTGIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDI
                     YAIGECASWNNRIFGLVAPGYKMAQVAVDHILGSENAFEGADLSAKLKLLGVDVGGIG
                     DAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIE
                     LPENPDSLILPAHSGSGKPSIGVDKLPDSAQICSCFDVTKGDLIAAINKGCHTVAALK
                     AETKAGTGCGGCIPLVTQVLNAELAKQGIEVNNNLCEHFAYSRQELFHLIRVEGIKTF
                     EELLAKHGKGYGCEVCKPTVGSLLASCWNEYILKPEHTPLQDSNDNFLANIQKDGTYS
                     VIPRSPGGEITPEGLMAVGRIAREFNLYTKITGSQRLAMFGAQKDDLPEIWRQLIEAG
                     FETGHAYAKALRMAKTCVGSTWCRYGVGDSVGLGVELENRYKGIRTPHKMKFGVSGCT
                     RECSEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLLAADIDRETLIKYLDRFMMFY
                     IRTADKLTRTAPWLENLEGGIDYLKAVIIDDKLGLNAHLEEEMARLREAVVCEWTETV
                     NTPSAQTRFKHFINSDKRDPNVQMVPEREQHRPATPYERIPVTLVEDNA"
     gene            complement(5694..6875)
                     /gene="tsgA"
                     /locus_tag="OQQ19_002871"
     CDS             complement(5694..6875)
                     /gene="tsgA"
                     /locus_tag="OQQ19_002871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter TsgA"
                     /protein_id="HCS1804421.1"
                     /translation="MTNSNRIKLTWISFLSYALTGALVIVTGMVMGNIADYFNLPVSS
                     MSNTFTFLNAGILISIFLNAWLMEIVPLKTQLRFGFLLMVLAVAGLMFSHSLALFSTA
                     MFILGVVSGITMSIGTFLITQMYEGRQRGSRLLFTDSFFSMAGMIFPMIAAFLLARSI
                     EWYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCY
                     ILGQLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTV
                     LAGLAAILMYVFNTGTPAHMAWSILALGFFSSAIYTTIITLGSQQTKVPSPKLVNFVL
                     TCGTIGTMLTFVVTGPIVEHSGPQAALLTANGLYAVVFVMCFLLGFVSRHRQHNTLTS
                     H"
     gene            7146..7718
                     /gene="ppiA"
                     /locus_tag="OQQ19_002872"
                     /gene_synonym="rotA"
     CDS             7146..7718
                     /gene="ppiA"
                     /locus_tag="OQQ19_002872"
                     /gene_synonym="rotA"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase A"
                     /protein_id="HCS1804422.1"
                     /translation="MFKSTLAAMAAVFALSALSPAAMAAKGAPHVLLTTSAGNIELEL
                     DKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEAD
                     NGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVAD
                     KISQVPTHDVGPYQNVPSKPVVILSAKVLP"
     gene            7823..7990
                     /locus_tag="OQQ19_002873"
     CDS             7823..7990
                     /locus_tag="OQQ19_002873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfG family protein"
                     /protein_id="HCS1804423.1"
                     /translation="MKKLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTAAEALA
                     RLVELRRHYER"
     gene            7980..8582
                     /locus_tag="OQQ19_002874"
     CDS             7980..8582
                     /locus_tag="OQQ19_002874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative adenosine monophosphate-protein
                     transferase Fic"
                     /protein_id="HCS1804424.1"
                     /translation="MSDKFGEGRDPYLYPGLDIMRNRLNIRQQQRLEQAAYEMTALRA
                     ATIELGPLVRGLPHLRTIHRQLYQDIFDWAGQLREVDIYQGDTPFCHFAYIEKEGNAL
                     MQDLEEEGYLVGLEKTKFVERLAHYYCEINVLHPFRVGSGLAQRIFFEQLAIHAGYQL
                     SWQGIEKEAWNQANQSGAMGDLTALQMIFSKVVSEAGESE"
     gene            8614..9177
                     /gene="pabA"
                     /locus_tag="OQQ19_002875"
     CDS             8614..9177
                     /gene="pabA"
                     /locus_tag="OQQ19_002875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component 2"
                     /protein_id="HCS1804425.1"
                     /translation="MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKP
                     QKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHG
                     KTSPITHNGEGVFRGLANPLTVTRYHSLVVEPGSLPACFDVTAWSETREIMGIRHRQW
                     DLEGVQFHPESILSEQGHQLLANFLHL"
     gene            9263..10483
                     /gene="argD/dapC"
                     /locus_tag="OQQ19_002876"
     CDS             9263..10483
                     /gene="argD/dapC"
                     /locus_tag="OQQ19_002876"
                     /EC_number="2.6.1.11"
                     /EC_number="2.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     acetylornithine/succinyldiaminopimelate transaminase"
                     /protein_id="HCS1804426.1"
                     /translation="MAIEQTAITRATFDEVILPIYAPAEFIPVKGQGSRIWDQQGKEY
                     VDFAGGIAVTALGHCHPALVNALKTQGETLWHISNVFTNELALRLGRKLIEATFAERV
                     VFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDG
                     FGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVTASTPEFLQGLRELCDQ
                     HQALLVFDEVQCGMGRTGDLFAYMYYGVTPDILTSAKALGGGFPISAMLTTAEIASAF
                     HPGSHGSTYGGNPLACAVAGAAFDIINTPEVLEGIQAKRQRFVDHLQKIDQQYDVFSD
                     IRGMGLLIGAELKPHYKGRARDFLYAGAEVGVMVLNAGPDVMRLAPSLVVEDADIDEG
                     MQRFAHAVAKVVGA"
     gene            complement(10550..12640)
                     /locus_tag="OQQ19_002877"
     CDS             complement(10550..12640)
                     /locus_tag="OQQ19_002877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312236.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HCS1804427.1"
                     /translation="MWRRLIYHPDINYALRQTLVLCLPVAVGLMLGELRFGLLFSLVP
                     ACCNIAGLDTPHKRFFKRLIIGASLFATCSLLTQLLLAKDVPLPFLLTGLTLVLGVTA
                     ELGPLHAKLLPASLLAAIFTLSLAGYMPVWEPLLIYALGTLWYGLFNWFWFWIWREQP
                     LRESLSLLYRELADYCEAKYSLLTQHTDPEKALPPLLVRQQKAVDLITQCYQQMHMLS
                     AQNNTDYKRMLRIFQEALDLQEHISVSLHQPEEVQKLVERSHAEEVIRWNAQTVAARL
                     RVLADDILYHRLPTRFTMEKQIGALEKIARQHPDNPVGQFCYWHFSRIARVLRTQKPL
                     YARDLLADKQRRMPLLPALKSYLSLKSPALRNAGRLSVMLSVASLMGTALHLPKSYWI
                     LMTVLLVTQNGYGATRLRIVNRSVGTVVGLIIAGVALHFKIPEGYTLTLMLITTLASY
                     LILRKNYGWATVGFTITAVYTLQLLWLNGEQYILPRLIDTIIGCLIAFGGTVWLWPQW
                     QSGLLRKNAHDALEAYQEAIRLILSEDPQPTPLAWQRMRVNQAHNTLYNSLNQAMQEP
                     AFNSHYLADMKLWVTHSQFIVEHINAMTTLAREHRALPPELAQEYLQSCEIAIQRCQQ
                     RLEYDEPGSSGDANIMDAPEMQPHEGAAGTLEQHLQRVIGHLNTMHTISSMAWRQRPH
                     HGIWLSRKLRDSKA"
     gene            complement(12691..13323)
                     /gene="crp"
                     /locus_tag="OQQ19_002878"
     CDS             complement(12691..13323)
                     /gene="crp"
                     /locus_tag="OQQ19_002878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cAMP-activated global transcriptional regulator
                     CRP"
                     /protein_id="HCS1804428.1"
                     /translation="MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIV
                     KGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKK
                     FRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
                     PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR"
BASE COUNT         3289 a         3492 c         3557 g         3246 t
ORIGIN      
        1 tccctatgta ttatatatta attaatattc attgattata tgaatataag cagactgctc
       61 gttaagaacg atacaggaat atttaattgg cgtcagtgag cgaatgactt aattttgtaa
      121 gtcgctgtaa cggtgaatat aacccattag cagataatat ttattaaggg gttatgtttt
      181 atttgctgaa tatataaaaa gagtcattaa gaaggccaga attctctggc ccgggttaaa
      241 ttaatggttg gagaaccagt tcagtttatc gcgcaggcca acaacccgac caataataat
      301 tagcgatgga ctgttcattt gctgagcaag ttcaccgagt tgcgtgagcg taccgtcaat
      361 cacgcgctgc gtgactgccg ttccgttttc gacaattgcc accggcattt cgccaggcat
      421 accgtgttca atcagctttt gctgaatagt cgcggcctga ttcaacccca tatagaacac
      481 cagcgtctgt ttttctgccg ccaggttttc ccagtccagc tcgccaccgg tttttaagtg
      541 tccggtaatt aagcgtacgc tctgggcata atcgcgatgc gtgagtggaa tacccgaata
      601 ggcagagcaa ccagaagctg cggtaatacc cggaaccacc gagaacggaa tacccgcgtt
      661 gcacagtgtt tccagctctt cgccaccacg gccaaaaata aacggatcgc cacctttcag
      721 ccgcaccacg cgtttgcctt tttgcgcttc ccgcagcagg atctggttaa tctcttcctg
      781 cggtacacag tggtatcccg cgcgtttgcc gacgaaaacg cgatcagcat cgcggcgtac
      841 cagattcata atatcgtcag aaaccagacg gtcgtagacc accacatctg cctgctgaat
      901 ttgttgcagt cctttcagcg tcagcagccc ggcatcgccc ggacctgcac caaccagcac
      961 cacttcaccg cgatggtcga gcggttcgtt gattaactgt tcggtcgttt cagtaatggc
     1021 tttctgatcg ttgtttgcca gcgactgcgc caggcggtcg ttaacgaaca atttctccca
     1081 gaaacggcga cgctcactca tcgtggtgaa ctgttgtttc actcgcccgc gtaattgccc
     1141 ggcatatttc gccacctggc ccagatgcaa cggcagcagt gattcgagtt tttcgcgcaa
     1201 caggcgcgcc agaaccggag aggtgccgcc agaggagacc gctaccatta gcggtgagcg
     1261 gtcaataatc gacggcataa taaagctggc ggctttcggc gcatcgacta cgttacagaa
     1321 gatgcgacga gcttcagcgg cttcgctgac gcgctggtta agcgtgtcat catccgtcgc
     1381 tgcaatcgcc agccagcagg tgtcgagaag gctttcatca aatggccctt cgacgagggt
     1441 taacatgcct gcatctgccc atgcggtgaa ctgtggaata aacgctaatg cattcaccgt
     1501 taagcgagcg cctgcgtcta acagcaacct tgctttgcgt tccgcgacat caccaccgcc
     1561 gacaatcaga cagtcgcgat cgcgtaattg gcaaaatata ggcaaatgat ccacgtaaaa
     1621 accccttagt aattaaccgg cagccgtttc agtttgatta aatttgtccg caaccggacg
     1681 attcgatttc ggcgtagcat accaataacc caatcccatg aatacggcac ctgataaagt
     1741 attacccagc gtcacccaca gcaggttatg accaataccc gccagcgtgt aggcttcgct
     1801 gtggttgccg aaccaggaga gcgcgaacag cgtcatgtta gcgatagagt gctcgtagcc
     1861 ggacgcgata aatgccagca gacaccacca gatagcgata aatttcgccg ccccttcagt
     1921 gcgcagcgcc atccagattg ccaggcaaac cagccagtta cacaatgcac ctttgaagaa
     1981 gagtaccatt gccggtgcag tggttttagc cagcgcgacg gagtgaacga tgctggtatc
     2041 taccggcagc aggctaccgc cgccccagct atagagcatg gcaacgaaga cggaaccgac
     2101 caggttaccc agccaggttt gcggcaggat tgcccacatt tgcccgtggc tgatgctgcc
     2161 cgcttttacc ccaaaggtga ggaacatggt gtgtccggtg aacagttcag aaccggcgat
     2221 aatcaccagc gttaaggcga taccaaaggt cgcgcccatc accagcggac gtacggacgg
     2281 gtcgagcaaa ttaccgagcg tgaaaatcaa gatgatccca agacccacat acgcgcccgc
     2341 catggcggag ctgacccaaa agccgagcgg gttatttgcc gacaggcgtg caatgcgcgc
     2401 agcgttagcc gcacacttat taatagtgtc tgtaaacatt tgattatcct ttaaaaaata
     2461 aaaacaaaaa aataaaacaa aaagtttaaa aaatgtcctg caatataccg aaggtaatta
     2521 caggaccatg caaaaagggg aggcattgcg cctcccgtta aaacattaac cgcgcagctg
     2581 caccacgccg tctttcactc gtgcttcgta atgtttgacg gaaaactgtt cgtcttccat
     2641 gcacaagcca tcacttaagc gaaaacgctg ttttttcagc gggctggcga cccacagctc
     2701 gccctggtgt tccgcaatca gcccgcgtga cagcacgctg gactcgaaga acggatcgat
     2761 gttgctgatc gcaaacacct ggtcgctgtg atacgggcgg aaaatcgcga cctgctcgtc
     2821 gcctaacagc gcgcagacgc cggtttcagg caggatgtca tcgattttgc agatgtcttt
     2881 ccactggctc atgcgttgtc ctccaccaga gttaccggga tacgttcata cggcgttgcc
     2941 ggacggtgct gttcgcgctc tggcaccatc tgcacgttcg ggtcacgctt gtcgctgttg
     3001 atgaagtgtt tgaagcgagt ctgcgcggac ggtgtattga ccgtttcagt ccactcacac
     3061 actaccgctt cacgcaggcg cgccatctct tcttccagat gagcgttcag ccccagtttg
     3121 tcgtcaatga tcaccgcttt caggtaatcg atgccgcctt cgaggttttc taaccacggc
     3181 gcggtacgcg tcagtttgtc ggcggtacgg atgtagaaca tcatgaagcg gtcgagatat
     3241 ttgatcagcg tttcgcgatc gatatcagct gccagcagat ccgcatgacg cggtttcatg
     3301 ccgccgttgc cgcaaacata caggttccag cctttttcag tggcgataat acccacgtct
     3361 ttaccctgag cttctgaaca ttcacgggta cagccggaga caccgaactt cattttgtgc
     3421 ggcgtacgga tgcctttgta gcggttttcc agttccacgc cgaggccgac gctgtcgcca
     3481 acgccgtagc ggcaccaggt gctacccacg caggttttcg ccatacgcag tgctttcgca
     3541 taggcatgac cggtttcgaa gccggcttca atcagctgac gccagatctc tggcagatcg
     3601 tctttctgtg cgccaaacat cgccaggcgc tgggaaccgg tgattttggt gtagagatta
     3661 aattcacgcg cgatacgacc cactgccatc agcccttccg gggtgatttc accgcccgga
     3721 gaacgcggga tcaccgagta ggtcccgtct ttctggatgt tagcgaggaa gttgtcgtta
     3781 gaatcttgca gcggagtatg ttctggcttc agaatgtatt cgttccagca ggaggccagc
     3841 agcgaaccga cggtcggttt acaaacttca caaccgtagc ctttgccgtg tttcgccagc
     3901 agttcttcga aggttttaat gccttcaacg cggatcaaat ggaacagttc ctgacgcgaa
     3961 taagcaaagt gttcgcacag gttgttgtta acttcgatgc cctgtttcgc cagttccgcg
     4021 ttcagtacct gagtgaccag cgggatacag ccaccgcagc cagtacccgc tttggtttca
     4081 gctttcagcg ccgcaactgt gtggcagcct ttgttgatgg cagcaatcag atcaccttta
     4141 gtgacgtcga agcaggagca gatttgcgcg ctgtccggca gtttatcaac accgatagac
     4201 ggcttaccgc tacccgagtg cgccggcaga atcagagaat ccgggttttc cggcagctcg
     4261 atagcattca gcaccagttg cagcaagtta ccgtagtcgc tggtatcgcc caccagtacc
     4321 gcaccgagca gggttttgtt gtcttcgctg acgatcaggc gtttgtagat ctctttgctt
     4381 tcgtcgaggt aaacgtagct acgtgcgcca ggcgtgcgac catgagcatc accaataccg
     4441 cctacgtcca cgcccagcag tttcagcttg gcgctaaggt cagcaccttc aaaggcgttt
     4501 tcgctaccga gaatatggtc aacggcgacc tgcgccattt tgtagccagg tgctaccaga
     4561 ccaaatatac ggttgttcca gcttgcgcat tcaccgatag cgtagatatc cggatcggaa
     4621 gtttggcagg aatcattaat gacgataccc ccacgcggag caacgtccag accacactgg
     4681 gttgccagct tatcgcgcgg acggataccg gtagagaaga cgataaagtc gacttccagt
     4741 tcgctgccgt cggcaaaacg catggtttta cgtgcttcga caccttcctg cacaatctca
     4801 agggtgtttt tgctggtgtg aacgcgcacg cccatacttt cgattttgcg acgcagctgc
     4861 tcgccaccca tctgatcaag ctgttccgcc atcagcatag gggcaaattc gataacgtgg
     4921 gtttcaatac ctaagttttt cagcgcgcca gcggcttcca gacctaacag gccgccacca
     4981 acaacggcac cgcgtttgct gcgacgggcg caggattcaa tggcgttgag gtcttcaatg
     5041 gtgcgataga caaagcagtc ctgagtatca gaacctttga ttggtgggat ccacgggtag
     5101 gaaccggttg ccatgatcag cttgtcataa aaaacggtac gtccggcgct ggagtgaatc
     5161 accttctcct gacggttgat ggtgatagcg cgttcgccga ccagaacttt gatgccgtgt
     5221 ttctcgtaga agccttcgcg caccagcgac agctcttcgg cggtgtggtg agagaagtaa
     5281 gacgagaggt gtacgcggtc ataagcgatg cgcggttctt cacagaaaac ggtaatatca
     5341 aagttggccg catcagattt atcaagaaga tcttcgataa agcgatggcc gaccataccg
     5401 ttaccgataa ttgcgagtct gactttgctc atttttgcct cgatttcttt tctattaccg
     5461 cctaccttaa cgattcagca accccgctta ttgatgtaaa tcaaattcac ctttatatac
     5521 cccttaaggg gtatattgct gatttgtata aattttctta agtcacggaa ttgtctgaca
     5581 tttcatgttt gtgcaaaaaa tagacaaaat gaacgggttt atagaaatag atgcacgtag
     5641 cggggttaga gaggaaaagg ccggacgacg atagtgccgt ccggcattag caattaatga
     5701 gaggtcaggg tgttatgctg acggtgacgg ctgacgaaac ctaacaggaa gcacatcaca
     5761 aagacgacag cgtacagacc gtttgctgta agcagtgccg cctgcggacc gctatgttca
     5821 acaatcgggc cggtaaccac aaaggtcaac atagtaccga tggttccgca ggtcaggaca
     5881 aagttaacca gttttggcga cggtactttg gtctgctgtg aacccagggt gatgatggtg
     5941 gtatagatcg cgctggagaa gaagcccaga gcgagaattg accacgccat atgtgctggt
     6001 gttccggtgt taaagacgta catcagaatc gcagccagac cagccagtac ggtcagaatg
     6061 cgttgcaaat caaagaagcg aagaataaag ctgaacgccc acatgccgac catgtatgac
     6121 atccagaagt tactcaccag cgtgcccgcg tcgttcaggc tcatgcccag gcctttggca
     6181 tactcaggca cccaggagat aaaacctaac tgaccgagga tgtagcacag cgccgcaaca
     6241 gagagaaaca gtacgccgat cccccacttt tctttctcta ccggagcatc cgtttttggt
     6301 gcatgtttgc ccagtgctgg gaactcacag ccgaaggtca gaataaaaat agcgacatac
     6361 accagcccga tgcaggcata aacccagtac cactcaatgc tgcgcgccag tagaaacgcg
     6421 gcgatcattg ggaaaatcat cccagccata ctgaagaagg agtcagtaaa taacaggcgg
     6481 gaaccgcgct gacgcccttc atacatttgt gttatcagga atgtaccaat cgacatagta
     6541 atgccgctga ccaccccgag aatgaacatc gccgtcgaga acagcgccag gctgtggctg
     6601 aacatcaaac cggcaaccgc cagcaccatc aggagaaagc caaaacgtaa ctgcgttttc
     6661 aacgggacga tttccatcag ccaggcgttg aggaagatag agattaaaat gccggcgttg
     6721 aggaaggtga aggtgttact catactggaa acaggcagat tgaaataatc ggcgatattt
     6781 cccatcacca tcccggtgac aataaccaac gcaccagtca gtgcgtagga gagaaagcta
     6841 atccatgtga gcttgatgcg attgctgtta gtcatgattg gcctgcgttc aaaaataaaa
     6901 tggcatagcg ggatatgccg cgagcgggtg attttaggtg attttgtgat ctgtttaaat
     6961 gttttattgc aatcggttgc taaattgcat tttaagaagt gattttgatc acggaataaa
     7021 aagtgatcgt caggttacat atatttcaga tacgtaaaat taggtaaagg gatggccttg
     7081 ttcttgaagg ctatttagaa tctcttcact tgcttttttt ctgctctgtt tgttaaggaa
     7141 atctcatgtt caaatcgacc ctggcggcga tggctgctgt tttcgctctt tctgctcttt
     7201 ctcccgcagc aatggcagcg aaaggggccc cgcacgtatt gttgacaacc tcagctggta
     7261 acatcgaact ggagctggat aaacaaaaag cgccagtgtc tgtgcaaaac tttgtcgatt
     7321 atgtgaacag cggtttttat aacaacacta cctttcaccg cgtcattcct ggctttatga
     7381 ttcagggcgg cggtttcacc gagcagatgc agcagaaaaa accaaacccg ccaatcaaaa
     7441 atgaagccga taacggcctg cgcaacacgc gtggcaccat cgcgatggcg cgtaccgctg
     7501 acaaagatag cgccaccagc cagttcttta tcaacgttgc cgataacgcc ttccttgacc
     7561 atggtcagcg tgatttcggt tacgcggtat ttggtaaagt ggtgaaaggc atggacgtgg
     7621 cggataagat ttcccaggtg ccgactcatg acgttggtcc gtaccagaat gtgccgtcaa
     7681 aaccggtagt tatcctttcc gctaaagtcc tgccgtaatg atttctcgcg cgggcaatct
     7741 tgcccgcgct tctgctctcc cggcgtaacc cggatttgcc gcttatactt gtggcaaatg
     7801 gacacgttca gggaggcatc aagtgaagaa actcaccgat aagcaaaagt cccgtctctg
     7861 ggagcttcag cgtaatcgta atttccaggc cagtcgccgt cttgaaggcg tcgagatgcc
     7921 tttagtcact cttactgccg cagaggcttt agcgcgcctt gtagagctga ggaggcacta
     7981 tgagcgataa attcggcgaa gggcgcgatc cgtatcttta tccaggcctt gatatcatgc
     8041 gtaaccggct gaacatccgc cagcaacaac ggctggaaca ggccgcttac gaaatgacgg
     8101 cgctgcgtgc tgcgaccatt gagcttggtc cgctggtgcg cggtttaccg catttgcgaa
     8161 ctatccatcg ccagctgtat caggatattt tcgactgggc agggcaactg cgtgaagttg
     8221 atatttatca gggcgatacg ccgttctgcc actttgctta tatagaaaaa gagggcaatg
     8281 ccctgatgca ggatctggag gaagaaggtt atctggttgg cctggagaaa acgaagttcg
     8341 tcgagcggct ggcgcattac tattgtgaaa tcaacgtgct gcatcccttc cgggtgggaa
     8401 gtggtctggc acagcggatc ttcttcgagc aactggcgat tcatgccgga tatcaactga
     8461 gctggcaggg tatcgaaaaa gaggcctgga atcaggcaaa tcagagtggg gcaatggggg
     8521 atctcaccgc actgcagatg atatttagca aagtggtaag cgaagccggg gaatctgagt
     8581 aaaatagcgc ggttctttcg taccggagcc gccatgatcc tgcttattga taactacgat
     8641 tcttttacct ggaacctcta ccagtacttt tgtgaactgg gggcggatgt gctggttaag
     8701 cgcaacgatg cgttgacgtt ggcggatatc gacgccctta aaccacaaaa aattgtcatc
     8761 tcacccggcc cctgtacgcc agatgaagcc gggatctccc ttgacgttat tcgccactat
     8821 gccgggcgct tgccgattct tggcgtctgc ctcggtcatc aggcaatggc gcaggcattt
     8881 ggcggtaaag ttgtgcgcgc cgcaaaggtc atgcacggca aaacctcgcc gattacacat
     8941 aacggtgagg gcgtatttcg ggggctggca aatccactta ccgtgacacg ctaccattcg
     9001 ctggtggtgg aacctggctc attaccagcg tgctttgacg tgacggcctg gagcgaaacc
     9061 cgcgagatta tggggattcg ccatcgccag tgggatctgg aaggtgtgca gttccatcca
     9121 gaaagtattc ttagcgaaca aggacatcaa ctgctggcta atttcctgca tctctgattt
     9181 ccgattgcca ttcagtgatt ttttatgcat attttgtgat tataatttca tatttattta
     9241 tgcgtaacag ggtgatcatg agatggcaat tgaacaaaca gcaattacac gcgcgacttt
     9301 cgatgaagtg atcctgccga tttatgctcc ggcagagttt attccggtaa aaggtcaggg
     9361 cagccgaatc tgggatcagc aaggcaagga gtatgtcgat ttcgcgggtg gcattgcagt
     9421 tacggcgttg ggccattgcc atcctgcgct ggtgaacgcg ttaaaaaccc agggcgaaac
     9481 tctgtggcat atcagtaacg ttttcaccaa tgaactggcg ctgcgtcttg ggcgcaaact
     9541 gattgaggcg acgtttgccg aacgcgtggt gtttatgaac tccggcacgg aagctaacga
     9601 aaccgccttt aaactggcac gccattacgc ctgtgtgcgt catagcccgt tcaaaaccaa
     9661 aattattgcc ttccataacg cttttcatgg tcgctcgctg tttaccgttt cggtgggtgg
     9721 gcagccaaaa tattccgacg gctttgggcc gaaaccggca gacatcatcc acgttccctt
     9781 taacgatctc catgcagtga aagcggtgat ggatgatcac acctgtgcgg tggtggttga
     9841 gccgatccag ggcgagggcg gtgtgacggc atcgacgcca gagtttttgc agggcttgcg
     9901 cgagctgtgc gatcaacatc aggcattatt ggtgtttgat gaagtgcagt gcgggatggg
     9961 gcggactggc gatttgtttg cttacatgta ctacggtgtg acgccggata ttctgacttc
    10021 tgcgaaagcg ttaggcggcg gcttcccgat tagcgccatg ctgaccacgg cggaaattgc
    10081 ttctgcgttt catcctggtt ctcacggttc cacctacggc ggtaatcctc tggcctgtgc
    10141 agtagcgggc gcggcgtttg atatcatcaa tacccctgaa gtgctggaag gcattcaggc
    10201 gaaacgccag cgttttgttg accatttgca gaagatcgat cagcagtacg atgtgtttag
    10261 cgatattcgc ggtatggggc tgttaattgg cgcggagctg aaaccacact acaaaggtcg
    10321 ggcgcgtgat ttcctgtatg cgggtgcaga ggttggcgta atggtgctga atgccggacc
    10381 ggatgtgatg cgtttagcac cgtcgctggt ggtggaagat gcggatatcg atgaagggat
    10441 gcaacgtttc gcccacgcgg tggcgaaggt ggttggggcg taaataagac gcatcaggca
    10501 aaatatgtcg gatgcggcgt gaatgcctta tccgatggtt tagcctgtat tacgccttcg
    10561 aatcccgcaa cttgcgactc agccaaatcc cgtgatgcgg tcgctgacgc catgccatcg
    10621 acgaaatggt gtgcatggtg ttcagatgac caataacccg ctgtaaatgc tgctccagcg
    10681 tacctgccgc gccttcgtgc ggctgcatct ccggcgcatc catgatattg gcatcgccag
    10741 aactacccgg ttcgtcatac tccagtcgct gctgacaacg ctgaatggcg atttcacaag
    10801 actgtaaata ctcttgtgcc agttcaggtg gcaatgcccg gtgttcccgc gccagcgtgg
    10861 tcatggcatt aatatgctca acaataaact ggctgtgcgt tacccacagt ttcatatctg
    10921 ccagataatg gctgttaaac gccggttcct gcatcgcctg attcaatgag ttatacagag
    10981 tgttatgtgc ctgatttacc cgcattcgct gccaggccag tggcgtaggt tgcggatcct
    11041 cgctaagaat caagcgaatc gcttcctgat aggcttctaa agcgtcatgg gcgtttttac
    11101 gcaataaccc gctctgccac tgcggccaca gccagacagt accgccgaaa gcaattaaac
    11161 aaccaataat ggtatcgata agacgcggaa ggatgtattg ctcgccgttc aaccacaata
    11221 gttgcagggt atacactgcg gtaatagtaa aaccgaccgt cgcccagccg tagtttttgc
    11281 gcaatatcag gtagctggcg agggtggtaa tcagcatcaa cgtcagggtg taaccttcgg
    11341 gaattttaaa gtgcagcgcc acgcccgcaa tgattaaccc gaccacggtt cccacggagc
    11401 gattcacaat cctcagacgg gttgcgccat agccattttg tgtcaccagc aataccgtca
    11461 tcaggatcca gtacgacttc ggcagatgca gcgcggtgcc catcaggctg gcaacgctta
    11521 acatcacact gagtcgtccg gcattgcgta gcgccggaga ctttagtgac agataacttt
    11581 tcagcgcagg aagtaatggc attcgccgct gtttatcggc cagtaagtca cgggcataga
    11641 gcggtttttg ggtgcgcagc acgcgggcga tgcggctgaa atgccagtag cagaattgcc
    11701 caaccggatt atccggatgc tggcgggcga ttttttccag tgcgccaatt tgcttttcca
    11761 tcgtaaaacg cgttggcagg cgatggtaaa gaatgtcatc agccagcacg cgcaggcgag
    11821 cggcgacggt ttgcgcattc cagcggataa cttcttccgc atggctacgc tcgaccagct
    11881 tttgcacctc ttccggctga tgcaaactga ccgaaatatg ttcctgtaaa tccagcgcct
    11941 cctggaaaat acgcagcatc cgcttgtagt cagtattatt ttgcgcggaa agcatatgca
    12001 tttgctgata gcactgggta attagatcga ccgctttttg ctggcgcacc agcagcggcg
    12061 gcagcgcttt ttcagggtcg gtgtgctggg taagcaggct gtatttggct tcacaataat
    12121 ctgccagttc acggtacagc agacttagtg actcgcgcag cggttgttcg cgccagatcc
    12181 agaaccaaaa ccagttaaac aatccgtacc agagagtgcc caacgcatag atgagcaacg
    12241 gttcccagac cggcatgtat cccgccagac tgagggtaaa aatggctgcc agcagcgatg
    12301 cgggaagcaa ttttgcgtgc aatggcccca actcagcagt gacgccaagt accagcgtta
    12361 atccggtcag caaaaagggc aggggaacat cttttgccag tagcagctgt gtcagtaagc
    12421 tacaggtggc aaacagcgac gcaccaatga ttaagcgttt gaaaaaacgt ttatgaggcg
    12481 tatcaaggcc cgcaatattg caacaggcag gaacgagaga gaagagcaga ccgaatcgta
    12541 attcgccaag cattaaccca acggccacgg gcaaacatag caccagcgtt tgtcgaagtg
    12601 catagttgat atcggggtga taaatcagtc tgcgccacat cgggggaaac aaaatggcgc
    12661 gctaccaggt aacgcgccac tccgacggga ttaacgagtg ccgtaaacga cgatggtttt
    12721 accgtgtgcg gagatcaggt tctgatcttc aagcatcttc agaatgcgtc ccacggtttc
    12781 acgagaacag ccgacaatct gaccgatttc ctgacgggta attttgattt gcataccgtc
    12841 cgggtgagtc atagcgtctg gttgttttgc cagattcagc agagtctgtg caatgcggcc
    12901 cgtcacgtcg aggaacgcca ggttgcccac tttctctgaa gtgacttgca gacgacgcgc
    12961 catctgtgca gacagacgca tcagaatgtc cgggtttacc tgaatcaatt ggcgaaattt
    13021 tttgtacgaa atttcagcca cttcacaggc ggttttcgca cgtacccatg cgctacgttc
    13081 ctggccctct tcaaacaggc ccagttcgcc aataaaatca ccctgattca gataggagag
    13141 gatcatttct ttaccctctt cgtctttgat cagcactgcc acagagcctt taacgatgta
    13201 gtacagcgtt tccgcttttt caccctggtg aataagcgtg ctcttggatg ggtacttatg
    13261 aatgtggcaa tgagacaaga accattcgag agtcgggtct gtttgcggtt tgccaagcac
    13321 catgcgcggt tatcctctgt tataagcttt ctccagagcc agataacgcc gctgtctctg
    13381 gattgccgaa atatgcttcc cgctacctgg gaaggggcta tcaactgtac tgcacggtaa
    13441 tgtgacgtcc tttgcataca tgcagtacat caatgtatta ctgtagcatc ctgactgttt
    13501 tagcatagct ttcgctttgt gtctcctggt gtctcgcttc agcatgaccc aggtcgcctt
    13561 ccgttgcgcg atttggttag tacg
//
LOCUS       DAJVSY010000109        13578 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.109, whole genome shotgun sequence.
ACCESSION   DAJVSY010000109 DAJVSY010000000
VERSION     DAJVSY010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13578
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.109"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..531
                     /locus_tag="OQQ19_002879"
     CDS             <1..531
                     /locus_tag="OQQ19_002879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001713187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1804429.1"
                     /translation="IVLGDNDTGFKQNGDGILDVYANSQRVFRFQNGVAIAFKNIQAG
                     DGKKFTLSSSNNSTKNATFNLWGASTRPVVAELGNEAGWHFYSQRNTDNSVIFSVNGQ
                     IQPSNWGNFDSRYVKDVRLGTRVVQLMARGGRYEKAGHAITGLRIIGEVDGDDEAIFR
                     PIQKYINGTWYNVAQV"
     gene            500..1063
                     /locus_tag="OQQ19_002880"
     CDS             500..1063
                     /locus_tag="OQQ19_002880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000930007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1804430.1"
                     /translation="MAHGITSHRCKLCSILKNIKSGNPKTKEQYQLTKNFDVIWLWSE
                     DGKNWYEEVNNFQDDTIKIVYDENNIIVAITKDAPTLNPEGFSVVEIPDITANRRADD
                     SGKWMFKDGTVVKRIYTADEQQQQAESQKVALLSEAESVIQPLERAVRLNMAMDEERT
                     RLESWERYSVLVSRVDTANPEWPQKPE"
     gene            complement(1092..1625)
                     /locus_tag="OQQ19_002881"
     CDS             complement(1092..1625)
                     /locus_tag="OQQ19_002881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000972171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1804431.1"
                     /translation="MMHLKNITAGNPKTKEQYQLTKQFNIKWLYSDDGKNWYEEQKNF
                     QPDTLKMVYYHNGVIICIEKDVSAINPEGASVVELPDITANRRADISGKWLFKDGVVI
                     KRTYTEEEQRQQAENEKQSLLQLVRDKTQLWDSQLRLGIISDENKQKLTEWMLYAQKV
                     ESTDTSSLPVTFPEQPE"
     gene            2404..3003
                     /locus_tag="OQQ19_002882"
     CDS             2404..3003
                     /locus_tag="OQQ19_002882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000905087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS1804432.1"
                     /translation="MLIGYVRVSTNDQNTDLQRNALVCAGCEQIFEDKLSGTKTDRPG
                     LKRALKRLQKGDTLVVWKLDRLGRSMKHLISLVGELRERGINFRSLTDSIDTSSPMGR
                     FFFHVMGALAEMERELIVERTLAGLAAARARGRTGGRRPKLTKEQHEQIARLIKNGHD
                     RKQLAIIYGIGTSTIYRYHPVGDIQTEETTGQTQENENR"
     gene            complement(3032..3520)
                     /locus_tag="OQQ19_002883"
     CDS             complement(3032..3520)
                     /locus_tag="OQQ19_002883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001761054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1804433.1"
                     /translation="MMMIYGMFVFELRTLPHQQLQQNKSWRHVKNERVNRSASWQYIG
                     AGDDRIVLSGVLYPEITGGEVSLSLLTTQAYTGRPWPLIDGVGQIYGMYVLTETNTTR
                     SEFDRYGKAKKIEFSLTLERCDEDLRERLQSSSFSDMLSGFKDKVTSSLNSAASSVKG
                     LF"
     gene            complement(3533..6340)
                     /locus_tag="OQQ19_002884"
     CDS             complement(3533..6340)
                     /locus_tag="OQQ19_002884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000853438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1804434.1"
                     /translation="MKTLDIRVAFSAVDRLTRPAENARRLMGQFGDSIQRTQGAIKNL
                     ERQARSFERARDAVSKADAGIVKARRQLNALNQLQRTGTVLSEKQQKLMQQLSTRLER
                     LNESRTREIQKMRELGGELKRHGISLTGSDNTIQQAIRRTEQYNNQLERERQALARVT
                     RARERYSRAQETAGKLKTGGALAIGAAAAGGYAAGRFLQPAIGFGKEMSRVQALTRID
                     QNSPQFKALREQALKLGSETQFTAGDAASGQAFLAMAGFTPQAIQAALPGVLSMATAG
                     GMDLGETADIGSNILTQFGLSADQMDRVGDTLTAAFTRTNTDLRALGETMKYAGPVAG
                     KLGISLEQAAAMAGVLANMGIRGSDAGTAMRASLARLASPPKAAAEALKELGVSVSDA
                     GGKMRPMEDVLADLYKATRKYGEVDRVSFFKDIAGEEAFTSFMALVDAAGDGSLPKLR
                     KELEGARGEAERTAKVMANNLDGDLKSLSSAWEGLRIRIADLIDGPLRSVTQWLTRVV
                     SKVTALAQAHPALTRQLLIAGGALLAMTATVGSLSLAIGVLAGPLAKLRLGFSLLTGS
                     MNAVRVLPALWGMVTGSVSLLGGAIGALFSPVGLIVAALAGAAVLIWKYWDPIRAFFA
                     GVFSGIMERLTPLRETFERFGPVFDAIGSGISQVFNWFKSLLSPMESSKETLDKCTSA
                     GEIFGNVLGGALQLVLTPAKMLLDTLAWILEKLGVLPDEAERARKKIEDAQRAAILQD
                     KVALLQGDLAKINPPKPVENGNGTGGDNPKDNKPLTDSNTGTLRRLSKIADNTGKLVE
                     ETKKRIGPGDIVFKNLPRALAVRGEWQERKIAQVSKPAPAINITPVVPAPLPPALVPV
                     VAASSRPVAEAIRSPVASVPVTSRNREPVAFGFGGEIHVHLHNVVTQNPRELAKLVGE
                     MVRAEMERRARAGRGCFYDKD"
     gene            complement(6378..6482)
                     /locus_tag="OQQ19_002885"
     CDS             complement(6378..6482)
                     /locus_tag="OQQ19_002885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000333494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HCS1804435.1"
                     /translation="MCFEHIEDLVADIAAIFNWSPAEIFMMTPGEVVS"
     gene            complement(6491..6865)
                     /locus_tag="OQQ19_002886"
     CDS             complement(6491..6865)
                     /locus_tag="OQQ19_002886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000651574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1804436.1"
                     /translation="MKDIDTETRNNTVADNVTAVEDMAVERGVKLTRPIERGGEKITY
                     VEITGAIEQAGSLRGLSLSDVLNLKADTMFTLLPRVTSPRLDEVMIKKMSSRDFIQLC
                     AVAVNFMSEPDSGAKSVQETAA"
     gene            complement(6921..7431)
                     /locus_tag="OQQ19_002887"
                     /pseudo
     CDS             complement(6921..7431)
                     /locus_tag="OQQ19_002887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310671.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
     gene            complement(7431..8615)
                     /locus_tag="OQQ19_002888"
     CDS             complement(7431..8615)
                     /locus_tag="OQQ19_002888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath family protein"
                     /protein_id="HCS1804437.1"
                     /translation="MSETRFHGARVTENTDLVTAINDVDSSVIGIVATADDADAKLFP
                     LNKPTLLTRVNDVLGKCGTTGTLYRALKAIADQVSTKVIVVRVAEHKEEDGKTQDQLV
                     IGGSEDDGSYTGMYALLVAEQDESIGYRPRILAAPELDTEAVTKSLCVIADKLRAFVY
                     ASCHGCNTMAEAITYRQKFNEREVMLLWPDFIAYNPKNGKNETFPAPAYACGLRAYID
                     HEQGWHKSLSNVPVKNVLGMSRHVFWSLQAEDSDANSLNNKEITTIIRRNGFRFWGNR
                     TPETNAYIFEVYTRTAQVLADSIAEAQFETIDSPLTPANVKDVISAIRAKLDSLVTAG
                     KLIGAECWYDVVDNSTTDLRQGRVRIRYKYTPVPPLEDMELYQTFTDEYFEPAFAVLG
                     GA"
     gene            8773..9882
                     /locus_tag="OQQ19_002889"
                     /pseudo
     CDS             8773..9882
                     /locus_tag="OQQ19_002889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001494339.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
     gene            10131..13250
                     /locus_tag="OQQ19_002890"
     CDS             10131..13250
                     /locus_tag="OQQ19_002890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000580159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1804438.1"
                     /translation="MIGQFLSATEILAKNYVRNKMVKNPFYSNLKWNFIEKNIIRLTS
                     SPVKSVLCISAFSFVLLYVGYLNELFIKNNLLHYFPFRHSLTEWQTTILSGQLTIIGI
                     VYPLVIGLVSVLFQKKADRKIAQTAYQRYSGFMLAGLSGLFLSGFILLSVLIKTVFGS
                     YLYGIACLISILWLLINIVLSIWFFIVSLEILDDVKRQIIIKRYIAFEIVMPHICNKI
                     SAKLRLYPIYQKHNYSNLEITQADYKGEYISVASSYSKEDELSLYHRPFQLTLNLINY
                     QLKKKNHFASFVIGDNRTKETESTGKILFSVKNIKPDSLLIKILKQCFYRAPIKGGDF
                     SVSLTMQAITADTYMYLRDSDLISFDNAISALINNFNNLCDLYFFQDDNTNNNFLLIT
                     TELFERSFQYEFSDEVYKISNNSMDKINLSERFFELCLWSGVRIINNRKHLISNELCI
                     YMGITRSQWSILTEWFRNNQSLLNASLRSRYNRILRTYITVWEQYQESINFRFCNTEN
                     SDLFELFCKTQLQELPSMIIDATQTRDPSTIDTAVDLINRWQHSMNIDSHSVEKYSYK
                     GQLFNPVFFISKKLNFNSDREWFNIAIINALTDMRICTCLYLTSRINTSDKLMTHYIK
                     LILEGKLIDQTGGYETPTEEIDNASQLIKILIRICLWTWSENMEHNGWMNSLARRLRD
                     YDKTDMVMGRVYSNVFDCGFIDMEQSWVQLLLIFSKKNDSVSKEIKEAIENNYITYRE
                     KQRLIGVLSKICNSIEYTQIKLTLTLDDLQTKKENLRKLLQEHINMLKKDLDMRLQDA
                     AIDVHRLDSTARKTSEHLRKRIKKTLPLSLFKSIDFKQASDCFTKHKISIKIDKEPYA
                     EGIESIPYINEGDIQADLILKDIQRIILSNLFSTGCSQHTVIEDFNMLIDHIKSSADL
                     AGKLVLVMSKEIFQQYNRMLFDNPNLRELMRKNDDGSMNITTESGTRKVYFLPFVNQP
                     FSLVVKDNYFTKLIIREYDNNKLVNVTSENIKSDSDKFKLTLNYELNIVFEGNADLKI
                     AHSQRVTSE"
     gene            13386..>13578
                     /locus_tag="OQQ19_002891"
     CDS             13386..>13578
                     /locus_tag="OQQ19_002891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001512982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ogr/Delta-like zinc finger family protein"
                     /protein_id="HCS1804439.1"
                     /translation="MFRCPLCGASARIRTSRPENDSNTVRQKYYQCNNLECGVCFSTL
                     EAFHKFTSKHASPIHSSEGI"
BASE COUNT         3736 a         3328 c         3024 g         3490 t
ORIGIN      
        1 attgttcttg gtgataatga caccggattt aaacagaatg gagacggtat tctggatgtt
       61 tatgctaata gtcagcgtgt attccgcttt cagaatggag tggctattgc ttttaaaaat
      121 attcaggccg gggatggtaa aaaattcacg ctatccagct ccaacaactc cacaaagaat
      181 gcaacgttta atttatgggg tgcttcaacc cgtccagtag ttgcagagtt aggcaatgag
      241 gcaggatggc atttctatag ccagcgaaat acagataact cggtaatatt ttctgttaac
      301 ggtcagatac agcccagcaa ctgggggaat tttgattcac gctatgtaaa agatgttcgc
      361 ctgggtacgc gtgttgttca attgatggcg cgtggtggtc gttatgaaaa agccggacac
      421 gcaattaccg gattaagaat cattggtgaa gtagatggcg atgatgaagc catcttcaga
      481 ccaatacaaa aatacatcaa tggcacatgg tataacgtcg cacaggtgta aattatgcag
      541 catattaaaa aatattaagt ccggaaatcc aaaaacaaaa gaacaatatc agctaacaaa
      601 gaattttgat gttatctggt tatggtccga agacggtaaa aactggtatg aggaagtaaa
      661 taactttcag gacgacacca taaagattgt atacgacgaa aataatatta ttgttgccat
      721 aaccaaagat gccccaacgc ttaatcccga aggctttagt gtcgttgaga ttccagatat
      781 aacagccaat cgtcgtgccg atgattcagg gaagtggatg tttaaggacg gaactgtggt
      841 taagcggatt tatacagcag acgaacagca acaacaggcc gaatcacaaa aggtcgcgtt
      901 gctttctgaa gctgaaagcg ttattcagcc actggaacgc gctgtcaggc tgaatatggc
      961 gatggatgag gaacgcacac gactggagtc atgggaacgc tacagcgttc tggtcagccg
     1021 tgtggataca gcaaatcccg aatggccaca aaagcctgag taaaaattaa ggcccaatat
     1081 cgggccttct ctcattctgg ttgttcggga aacgttactg gcaggctgga ggtgtctgta
     1141 gattcgactt tctgcgcata gagcatccac tcggttaatt tttgtttatt ctcgtcggaa
     1201 atgatgccca gtcgtagctg tgagtcccat agctgggttt tatccctgac aagttgcaac
     1261 aggctttgct tttcattttc cgcttgttgc ctctgctctt cctcggtata agttcgcttt
     1321 atcactacgc catctttgaa caaccatttc cccgaaatat cagcccggcg atttgctgta
     1381 atatcaggta attcaacgac gcttgcgcct tccggattaa ttgctgaaac atccttttca
     1441 atacaaataa taacgccgtt atggtaatag accattttca aagtgtctgg ctggaaattc
     1501 ttttgttcct cataccagtt ttttccatca tctgaataaa gccatttgat gttaaattgc
     1561 tttgttagct ggtattgctc ttttgtttta gggttgccag cagtaatgtt ttttaagtgc
     1621 atcatcgtta aatactcccc gcgttatacc acgtcccatt aatgcaatac tgaattggcc
     1681 ttgcctgtgt tgtatcaatt aattcatcac ggtttccgtt aactgaaccc gtaacgacat
     1741 aacctgacct gtcagaccag ccgggaccat tccatgtctg aacagatgac agaccgccaa
     1801 ggcgaatacc tgtaataaac cttgagttac attctgcccg cgtatatgca ccaacatctc
     1861 ccgctgaagg ttttcgtgtc gtggtataga aatctgacca acctaattca accccataac
     1921 catcacgagc cgacctgtag gaaatgccac catttttata attcacacgg aattgtacgg
     1981 caggacagct accagcattt atattaaagt gaagaattaa tgcagatgca ccaccaatca
     2041 gggcgttata tgcaccacta tcccaattcc atccaacgga tgtatcacca ttaacagtat
     2101 tacctgtttg tcggagtgca aatgcattga catttttggc actaattgag atatcgctag
     2161 aaccatcaaa accaactcca gcaatttttc gtgctgtttt cagctttgtt gcagtagcgg
     2221 cattgccgga cagttcccca gaaaggccac cgctgaatgt ttgtcgattg gtccaggtat
     2281 tcgctgtact gagtaacggt attttctccc cgcttgtgcc gagttctcgt aaaccgaggt
     2341 tttaaataat ggccgtttct ggcctgcatg gcatgatttg cgcttttgga cgggagattc
     2401 agtgtgctga ttggctatgt aagggtatca acaaatgacc agaatacaga cctgcaacga
     2461 aacgctcttg tttgtgcagg atgtgaacaa atatttgaag ataaattaag cgggacaaag
     2521 acagaccgac cgggattaaa acgcgcttta aagcgccttc aaaaaggtga cacgctggtt
     2581 gtctggaaac tggatcgcct cgggcgaagc atgaaacatc tgatttctct cgtcggggaa
     2641 ctacgggagc gagggattaa ttttcgcagt ctgaccgaca gcatagacac atcttctcca
     2701 atggggcgtt ttttcttcca cgtgatgggt gccctggctg aaatggaacg tgaattaatt
     2761 gttgaacgta cactggccgg gctggcggca gcgcgcgcaa gggggcgcac aggcggacgt
     2821 cgaccgaagc tgacaaaaga acagcatgag caaatagcaa ggctaatcaa aaacgggcac
     2881 gacagaaaac aactggcaat aatttacggc attggcacat cgacgattta tcgttatcac
     2941 cctgtaggcg atatacagac tgaagaaaca accgggcaga ctcaggaaaa tgaaaaccgc
     3001 taatctgacc attagcggtt tttgtgttaa atcagaacag ccctttaact gaactggccg
     3061 cgctgttaag agatgatgtc accttatctt tgaagccgga cagcatatca ctgaacgatg
     3121 aggattgcag gcgctcccgc aaatcctcat cacagcgttc aagagtcagt gaaaattcta
     3181 tctttttcgc cttaccgtag cgatcaaact cggagcgggt cgtattcgtt tcagtcagga
     3241 catacatgcc gtaaatctgc ccgacgccat caatcaaagg ccagggtcgt cctgtatacg
     3301 cctgcgtagt cagcagcgac agcgacactt cgccacctgt aatttcagga taaagcacac
     3361 cagaaagaac gatgcgatca tcacctgcac cgatatactg ccagcttgct gaacggttaa
     3421 cgcgttcatt tttcacatgc cgccagcttt tgttttgctg taactgctga tgcggcagcg
     3481 tgcgcagctc aaaaacaaac atgccgtaga tcatcatcat ggccatgact cctcaatctt
     3541 tatcgtaaaa acagccacgc ccggcacggg cgcgccgttc catttctgcc ctgaccattt
     3601 caccgaccag tttcgccagt tcgcggggat tctgcgtaac aacgttatgc agatgaacat
     3661 gaatttcacc accaaatccg aaggcaacag gctcccggtt acgggaagtt acaggaactg
     3721 atgccactgg agatcgtata gcctccgcca ccgggcggga gctggccgca acaacaggga
     3781 ccagcgccgg aggcagcgga gccggaacca cgggtgtgat attaattgcg ggggcaggct
     3841 tactgacctg cgcaatcttc cgctcctgcc actccccacg aacagcaagt gctcggggca
     3901 ggtttttaaa gacaatatcg ccggggccaa tgcgtttttt cgtctcctca accagcttac
     3961 ctgtgttatc agcaattttg ctgagtctgc gcagcgtacc ggtattgctg tctgtgagcg
     4021 gtttattgtc tttggggtta tcacctccgg tgccattgcc attttccaca ggcttcggcg
     4081 gattgatttt cgccagatcc ccctgaagca aggcaacctt gtcctgaaga atggccgcac
     4141 gctgtgcgtc ttcgattttc ttgcgcgccc tttccgcttc atccggaagc acaccaagct
     4201 tttcaagtat ccacgccagc gtatccagca acatttttgc aggtgtcaga acaagttgta
     4261 acgcaccgcc aagaacgtta ccgaatatct cgccagcact ggtacattta tccagagttt
     4321 ccttgctgga ctccatcggt gacagcagcg atttaaacca gttaaacacc tggctgatcc
     4381 cactcccgat tgcgtcaaaa acaggaccaa accgttcaaa ggtttcgcgc aacggggtca
     4441 gcctttccat aatcccgctg aacaccccgg caaaaaatgc cctgatggga tcccagtatt
     4501 tccagataag aacggcagct ccggcaagcg cagccacgat aagaccaacc ggactgaaca
     4561 acgccccgat agcgcctccc agtaaagaaa cggaacccgt caccattccc catagtgctg
     4621 gcagaaccct gacagcattc attgatccgg tcaggaggga aaaaccaaga cgcagttttg
     4681 ccagcgggcc agcaagcaca ccaatagcca gcgacaacga gccaaccgtt gcagtcattg
     4741 ccagcaatgc accgcctgca atcagtagct ggcgcgtcag tgcgggatgg gcctgcgcca
     4801 gcgccgtcac ctttgatacc acacgcgtga gccactgcgt gacagaacgc agcggaccgt
     4861 caatcagatc tgcaatgcgg atgcgcaacc cttcccatgc actgctgagt gatttcagat
     4921 cgccgtcaag gttgttggcc ataacctttg ccgtgcgttc agcctcaccg cgcgcgcctt
     4981 caagttcttt tctcagtttg ggtaaggagc cgtcacctgc cgcatcaacg agggccataa
     5041 atgatgtgaa agcctcttct ccggcaatgt ccttaaagaa cgatacccgg tcaacttccc
     5101 cgtatttgcg ggtagcttta taaaggtcag ccagcacatc ctccatcggg cgcattttgc
     5161 ccccggcatc cgagacagac acgccaagct ctttcagcgc ctctgctgcc gcctttggcg
     5221 gtgatgccag acgagccagg ctggcacgca ttgccgtacc agcatcactc cccctgatac
     5281 ccatattcgc cagcacgccc gccatcgctg cggcctgctc cagagatatt cccagcttac
     5341 ccgccaccgg acctgcatat ttcatggttt cacccagtgc gcgaaggtca gtgttggtac
     5401 gggtaaacgc tgcggtgagt gtgtcgccga cccggtccat ctggtcagca gaaagaccga
     5461 actgcgtcag aatatttgag ccaatatccg ccgtctcacc gaggtccata ccgccagccg
     5521 ttgccatgct cagtacgcca gggagcgcag cctgaatggc ctgtggtgta aagccagcca
     5581 ttgcaagaaa tgcctgtcca ctggcggcat cgcctgcggt gaactgcgtt tcagagccaa
     5641 gttttaacgc ctgctcacgc agcgccttaa actgcgggct gttctggtcg attcgcgtca
     5701 gtgcctgaac gcgggacatc tctttgccga acccgatcgc aggctgcaaa aaacgcccgg
     5761 cagcatagcc gcccgccgct gccgcaccaa ttgccagcgc accacctgtt ttcagttttc
     5821 ccgctgtttc ctgcgcgcgc gaataccgct cacgcgcccg tgttacacgc gcaagcgcct
     5881 gccgttcgcg ttcaagctgg ttgttgtact gttcggtgcg tctgatggcc tgctggatgg
     5941 tgttatcgct gcctgtcagg gaaatgccgt ggcgtttcag ctctccgcca agctcccgca
     6001 ttttctgaat ttcccgtgtg cgcgattcat tcaggcgttc aagccgggtg cttaactgct
     6061 gcatcagctt ttgttgtttt tcgctgagca ctgtacccgt gcgttgtaac tgattaaggg
     6121 cgttaagctg gcgtcgtgct ttcacgatgc cagcatccgc tttactgaca gcgtcacggg
     6181 cgcgctcaaa tgatcgcgcc tgacgctcga gatttttgat cgccccctgc gttcgctgga
     6241 tggagtcacc aaactgcccc atcaggcggc gggcgttttc ggcaggccgg gtcagcctgt
     6301 caacggcgct gaaagcgacc cggatatcaa gagtcttcat tgtctgcatt cccgctacga
     6361 agtgccgccc gctcacgtca gctaaccact tcgccgggcg tcatcatgaa gatttcggcg
     6421 ggcgaccagt taaaaatggc ggcaatatcc gccaccagat cttcgatgtg ctcaaagcac
     6481 accagggtga ttacgctgcc gtctcctgca cgctcttcgc gccagagtct ggctcgctca
     6541 taaaatttac agccacagcg cacaactgaa taaaatcgcg tgacgacatt tttttaatca
     6601 tcacttcatc cagtcgtggc gaggtcacgc gaggcaacag cgtgaacatg gtatccgctt
     6661 tcagattcag cacatcagac agcgacagac cacgcaggga tccagcctgc tcaatagccc
     6721 cggtgatctc cacatacgtg attttttcgc caccacgctc aattggtcgg gtcagtttta
     6781 cgccacgttc gacagccata tcctcaactg ccgtcacatt atccgccacg gtgttattcc
     6841 gggtttcagt atcgatgtct ttcatctgtt gtctcctttt cagtcagagg cgacgcactg
     6901 cgccgccagc atattactta tcagccaagc ccaagcgcgg aacggatgcg atcgggcaca
     6961 atgtccttgc cgtccttccg gtaaatgaag ttcagcaggt caatctccca caacgggcga
     7021 tcgttaacac tcagcttgta gtaggtgttt taatggcgta agtgtgtgat gtggcttcgc
     7081 cctgtttggc ttcccccata tcaatttccg tcacacgtcc gcgcatttcg acttcataca
     7141 ggtcgctttc tgcatcggtg tagtattcac ccgcaaaacg cagcagcgtg ccgtcaatcg
     7201 tgccgccata cttaaggaac agctcacgaa ctgcgccccc atgacaaagc tcgcatcaag
     7261 cgcggagtcg tccagaccga gatcaatact taccgcaccc atcatgccac caccccggta
     7321 gctgtcggtt ttgcgcgtca gcttaggcag agtgacggac gtcacattac ccacttcgtt
     7381 ttcaccatcc acaaacagcg taaaaaagcg aagatgtttt ggcacagcca tcaggcacct
     7441 cccagcaccg caaatgcggg ttcaaagtat tcatcagtaa acgtctggta aagctccatg
     7501 tcttccagtg gcggaacggg cgtatatttg tagcgaatac gcacacgtcc ctgacgtaaa
     7561 tccgtggtgc tgttatccac cacgtcatac cagcactccg cgccaatcag tttcccggca
     7621 gtcaccagtg aatccagttt tgccctgatg gcactgataa catccttcac attcgcaggc
     7681 gtcagtggac tgtcgatggt ttcaaactgc gcttccgcaa ttgaatcagc cagcacctgt
     7741 gcggttcggg tatacacctc aaagatgtag gcgttcgttt ccggtgtgcg gttaccccag
     7801 aagcggaacc cgttgcgacg aataatggtc gtgatttctt tgttgttgag gctgttggca
     7861 tcgctgtctt cggcctgcaa cgaccagaac acatgcctcg acatccccag cacattttta
     7921 accggaacgt tggacagcga tttgtgccat ccctgttcat ggtcaatgta cgcacgaagg
     7981 ccgcacgcat aggcaggcgc ggggaacgtt tcgtttttgc catttttcgg gttgtaggcg
     8041 atgaagtccg gccataagag catcacctca cgttcgttga atttctggcg gtaggtaatt
     8101 gcctcggcca tcgtgttaca gccatgacat gaggcataca caaacgcgcg cagtttatct
     8161 gcaatcacgc acagggattt tgttaccgcc tccgtgtcca gctccggcgc ggccagaata
     8221 cgcggacggt atccgatgct ttcatcctgc tctgcaacaa gcagcgcata catccccgta
     8281 tagctgccgt catcctcaga accaccgata accagttgat cctgcgtctt tccgtcttct
     8341 tctttgtgtt cagccacgcg aacgacgatc acctttgtgc tcacctggtc tgcgatggcc
     8401 ttaagcgcac gataaagcgt ccccgttgtc ccgcattttc ccagcacgtc attgacgcgg
     8461 gtcagcagtg tgggcttgtt cagcgggaac agcttcgcgt ccgcatcatc cgccgttgcc
     8521 acgataccga taacgctgga atcaacatcg ttaatcgctg ttaccaggtc ggtattctcc
     8581 gtaacacggg caccatgaaa acgagtttca ctcatagctt cagccccttg tatccgttaa
     8641 atgattcagc aacaatcatc acccaccacg cgcgtaatct cacccctgcg ccgttctccc
     8701 gccacggcga caacaaaaag cagtaacccc ctccgcacgc acatgcgacc atgccgcaca
     8761 gggagggagc agatgaccga caccaccatg caattgctca gtcagggcac ggcccccgtg
     8821 aaaatgccgg attttgatat tctctcggag ggtaaaacgc tgtcaggcgt ggcggagcgc
     8881 ctgatgagcc tgtaactgac cgacaaccgg ggatttgagg cggaccagct caccatcacg
     8941 ctggatgatg cggatggtca gttgcagcta ccgccacggg gcgcgcgtct gacggttctc
     9001 attggctgga aaggggaacc gctgacagaa aaaggcactt acattgttga tgaaatcgct
     9061 cacgaaggac cgccggacag gctgactgtt tcagccagaa gcgcagattt tcgggatgaa
     9121 tttaacgtta aacgtgaggt gtcctggcat gatgtgaccg ttgagcgtgt ggtatccgcc
     9181 atcactcatc ggtacggtct gaaaccgcaa atcagcgaaa tgctgatgga tatcgaaatc
     9241 gaccacgccg accagaccga agaaagcgac atgtcctttc ttacgcgcat ggcggaaatg
     9301 ctgggagcaa tcgccacggt aaaaagcggc aatctgttat tcatcatgcc aggtggtggc
     9361 gtgaacgcac aggggcagcc gttgccctcg ttcgccatta cacgcagcag cggcgatcgc
     9421 catcagttcc gcattgctga ccgcgaggcg tatacggggg tacgcgccta ctggcttgat
     9481 cttaattacg ggaaaaagaa aaaagtcagc gtgaaacgcc gcaaaccgcc aaaacccaaa
     9541 aaggagaaaa gcagcagtcg ggaaggcgac tatatggaag gtgcggaagg caacgtgttt
     9601 gtgttacgca agacttatca gaacgagcag gcagcaagac gcgcagcggc ggcaaagtgg
     9661 cagcagctac aacgcggagc cgcatcattc tccatcacgc tggcgcgtgg tcgtgcagaa
     9721 ctctatcccg aaatgcatgg cacagtgaca ggctttaaaa gcgagattga ttatcaggac
     9781 tggactattg caaaagccga gcacaccatt gataacagcg gctttaccac gcagcttgaa
     9841 cttgaagcaa aaatcccgga atggatagca gaaacagaat aaatctctta aaaatattat
     9901 ttttgagatg tgcttctaca ctgacagtaa gaacaaaaga taatgtatca gcccactaga
     9961 tgtcagaggt tggggcatca accagatgct aacaataata cggatgtttt tcccacatga
    10021 cagaggaagt caagtataat cttcacagtc catcccgtcc aagggaatat gactcaatag
    10081 taaaagttcc agtttagtta gtagacccac actttataga agagtaattc atgattggac
    10141 aatttttaag tgcaacagag attttagcaa agaactatgt tcgtaataaa atggttaaaa
    10201 atccatttta ttcgaattta aaatggaatt ttattgaaaa aaacatcata agattaacat
    10261 cctcaccggt taaatcagta ctttgcatat cagctttttc atttgtacta ctttatgttg
    10321 gatatttaaa cgaattattt ataaaaaata atcttttaca ttatttcccg tttaggcatt
    10381 cattaaccga atggcaaaca accattttaa gtggccaatt gacaattatt ggtattgtat
    10441 acccccttgt tataggttta gtaagtgtct tattccaaaa aaaggcagat agaaaaatag
    10501 cccaaactgc ttatcagcgt tactcaggat tcatgcttgc tggactcagc gggcttttct
    10561 tatcaggatt tatacttctc agtgtactaa ttaaaactgt ctttggaagt tatctttatg
    10621 gtatagcttg tctaatcagc atattatggc ttttgataaa catagttctt tctatttggt
    10681 tctttatcgt gagtcttgaa attcttgatg atgtaaaacg gcaaataatt ataaagcgat
    10741 acattgcctt cgaaatagta atgccccata tttgtaacaa aatctcagcc aagcttaggt
    10801 tataccctat ctatcaaaaa cataactatt caaatttaga aatcacgcaa gccgattaca
    10861 aaggagaata catatctgtg gctagcagtt attctaagga agatgagtta agtttatatc
    10921 accgtccttt tcaacttact cttaatctta ttaattacca actaaaaaag aagaatcatt
    10981 ttgcgtcatt tgtcattggt gataatcgta caaaagaaac agaatccacg ggtaagatac
    11041 tttttagcgt taaaaatatc aaaccagaca gcttattaat aaaaatactt aagcaatgtt
    11101 tttatagggc tccgattaaa ggaggagatt tttccgtaag tcttacaatg caggctataa
    11161 cagcagatac gtatatgtat ctgcgggatt ctgatctcat tagttttgac aatgctatct
    11221 ctgcattaat taataacttt aataatctct gcgatttgta tttttttcaa gatgataata
    11281 ccaacaataa cttcttactg atcactacag aattatttga acggagtttt caatatgagt
    11341 tttcagatga agtttataaa atatcaaata attccatgga taaaattaat ctttctgaaa
    11401 gattttttga attatgtctt tggagcggag tgcgtattat caataataga aaacatctta
    11461 tcagcaatga actttgtatc tatatgggaa ttactcgttc acaatggtca atattaacag
    11521 aatggttccg aaacaaccaa tcactcttaa atgcctcgct tcgttcacgt tataatcgta
    11581 tattaagaac ctatatcact gtttgggagc aatatcaaga aagcataaac tttcgtttct
    11641 gcaatacaga gaattcagat ttatttgaat tattttgcaa aacgcaacta caagaacttc
    11701 catcgatgat tattgatgca acacagactc gcgatccttc tactattgat acagccgtcg
    11761 atcttattaa ccgatggcag cactcaatga atattgacag ccattcggta gaaaaataca
    11821 gttacaaagg ccagcttttt aacccggttt ttttcatatc caaaaaacta aacttcaatt
    11881 cagacagaga gtggttcaat attgccatca taaatgcgtt gactgacatg cgtatatgca
    11941 catgtcttta tctgacatca agaatcaata cttctgacaa actaatgaca cattacatta
    12001 aacttatttt agagggtaaa cttattgacc aaaccggtgg atatgaaact cccactgaag
    12061 aaattgataa tgcaagccaa ctaatcaaga tattaattag aatctgcctg tggacatggt
    12121 ctgaaaatat ggagcacaat gggtggatga atagtttagc aaggcgttta cgtgactatg
    12181 ataaaacaga catggtgatg ggcagagttt acagtaatgt ttttgactgt ggatttattg
    12241 atatggaaca atcatgggtt cagctattat taattttttc taaaaagaac gatagcgtat
    12301 caaaagaaat aaaagaagca atagaaaaca actatataac atatcgtgag aagcaacgac
    12361 tcattggagt attatcaaaa atttgtaact ccatcgaata cactcaaatc aagctgactt
    12421 taacattgga cgatctccaa acaaaaaaag aaaacttaag aaagttgctt caagagcata
    12481 ttaacatgct aaagaaagat cttgatatga gacttcagga tgctgccata gatgtacatc
    12541 gactagatag cactgcacgt aaaacatcag aacatcttcg taaacgcatc aagaaaacgc
    12601 tccctctttc acttttcaaa tctattgatt ttaagcaggc tagcgattgt ttcacaaaac
    12661 ataagatatc tattaagata gataaagaac cgtatgccga aggaatagaa tccatccctt
    12721 atatcaatga aggtgatatt caagcagact taattctcaa ggacatccag agaataatac
    12781 tttcaaattt atttagcact ggctgttcgc aacataccgt aatagaagat ttcaatatgt
    12841 tgattgatca cataaaatca tctgctgact tggctggcaa actggttctt gtgatgagta
    12901 aagagatctt tcagcaatat aatcgtatgc ttttcgataa tcccaacctc agagaactaa
    12961 tgagaaaaaa tgatgatggc tctatgaaca taactactga atccggtacc cgtaaggttt
    13021 acttcttacc atttgttaat caaccatttt ctcttgtggt aaaggataac tacttcacta
    13081 aattaattat tagagaatat gataataata agttagtaaa tgtcacttca gagaatatca
    13141 aaagtgactc agataaattc aagctaactc ttaactatga gttgaatata gtatttgaag
    13201 gaaacgctga tttaaaaata gctcactcgc aaagagtgac atcagaataa tatctttgac
    13261 ggcgctcctt agagtgccgt tcgtttatta actaatgcta aaaatcatta tatagagaaa
    13321 gtcatgttta aatcttagag aatacaacct agaatagtgt aagcactaca ataagagagg
    13381 tcgctatgtt ccgttgtccg ctttgtggcg catctgcccg tatccgcacc agtcgtccgg
    13441 aaaatgattc aaacaccgtg agacaaaagt attatcagtg taacaatcta gaatgcggcg
    13501 tatgtttctc aacactggaa gccttccaca aattcacttc aaagcacgcc tcccccattc
    13561 actcatcaga gggcatcc
//
LOCUS       DAJVSY010000110        13522 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.110, whole genome shotgun sequence.
ACCESSION   DAJVSY010000110 DAJVSY010000000
VERSION     DAJVSY010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13522
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.110"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..186
                     /locus_tag="OQQ19_002892"
     CDS             <1..186
                     /locus_tag="OQQ19_002892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HCS1804440.1"
                     /translation="CWSLAAGANPSFIASQMGHTNAQMVFNVYGAWMKDNNHEQIELL
                     NRRLSESVPCMPHKKAG"
     gene            207..908
                     /gene="mlrA"
                     /locus_tag="OQQ19_002893"
     CDS             207..908
                     /gene="mlrA"
                     /locus_tag="OQQ19_002893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MlrA"
                     /protein_id="HCS1804441.1"
                     /translation="MGLPLIPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIK
                     RWIDNGVQVSKVKMLLSNENVDVQNGWRDQQETLLTYLQSGNLHSLRTWIKERGQDYP
                     AQTLTTHLFIPLRRRLQCQQPTLQALLAILDGVLINYIAICLASARRKQGKDALVVGW
                     NIQDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQL
                     TSWQEQGHDIFPLGI"
     gene            968..1075
                     /locus_tag="OQQ19_002894"
     CDS             968..1075
                     /locus_tag="OQQ19_002894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YohO"
                     /protein_id="HCS1804442.1"
                     /translation="MRIAKIGVIALFLFMALGGIGGVMLAGYTFILRAG"
     gene            complement(1056..1787)
                     /gene="yehW"
                     /locus_tag="OQQ19_002895"
     CDS             complement(1056..1787)
                     /gene="yehW"
                     /locus_tag="OQQ19_002895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter permease YehW"
                     /protein_id="HCS1804443.1"
                     /translation="MKMLRDPLFWLIALFVALIFWLPYSQPLFAALFPQLPRPVYQQE
                     SFAALALAHFWLVGISSLFVVIIGTGAGIAVTRPWGAEFRPLVETIAAVGQTFPPVAV
                     LAIAVPVIGFGLQPAIIALILYGVLPVLQATLAGLGAIDASVTEVAKGMGMSRGQRLR
                     KVELPLAAPVILAGVRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGAL
                     LVALAAIIADRLFERLVQALSQHAK"
     gene            complement(1792..2718)
                     /gene="yehX"
                     /locus_tag="OQQ19_002896"
     CDS             complement(1792..2718)
                     /gene="yehX"
                     /locus_tag="OQQ19_002896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter ATP binding
                     protein YehX"
                     /protein_id="HCS1804444.1"
                     /translation="MIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTL
                     KMINRLVEHDSGVIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQL
                     QKWSRARIDDRIDELMALLGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDE
                     PFGALDPVTRGALQQEMTRIHRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGN
                     PLTMLTRPANDFVRQFFGRSELGVRLLSLRSVADYVCREERAEGEALAEEMTLRDALS
                     LFVARGCEVLPVVNTQGQPCGTLHFQDLLEEA"
     gene            complement(2711..3868)
                     /gene="yehY"
                     /locus_tag="OQQ19_002897"
     CDS             complement(2711..3868)
                     /gene="yehY"
                     /locus_tag="OQQ19_002897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter permease YehY"
                     /protein_id="HCS1804445.1"
                     /translation="MTYFRINPVLALLLLLTAIAAALPFISYAPNRLVSGEGRHLWQL
                     WPQTIWMLVGVGCAWLTACFIPGKKGSICALILAQFVFVLLVWGAGKAATQLAQNGSA
                     LARTSLGSGFWLAAALALLACSDAIRRISTHPLWRWLLHMQIAIIPLWLLYSGTLNDL
                     SLMKEYANRQDVFDDALAQHLTLLFGAVLPALVIGVPLGIWCYFSTARQGAIFSLLNV
                     IQTVPSVALFGLLIAPLAALVTAFPWLGKLGIAGTGMTPALIALVLYALLPLVRGVVV
                     GLNQIPRDVLESARAMGMSGAQRFLHVQLPLALPVFLRSLRVVMVQTVGMAVIAALIG
                     AGGFGALVFQGLLSSAIDLVLLGVIPVIVLAVLTDALFDLLIALLKVKRND"
     gene            complement(3875..4792)
                     /gene="osmF"
                     /locus_tag="OQQ19_002898"
     CDS             complement(3875..4792)
                     /gene="osmF"
                     /locus_tag="OQQ19_002898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter
                     substrate-binding protein OsmF"
                     /protein_id="HCS1804446.1"
                     /translation="MPLSKVWAGSLVMLAAVSLPLQAASPVKVGSKIDTEGALLGNII
                     LQVLESHGVPTVNKVQLGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQ
                     QGYEKVKKLDSEHNKLIWLTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTF
                     KLAASAEFIERADALPAFEKAYGFKLGQDQLLSLAGGDTAVTIKAAAQQISGVNAAMA
                     YGTDGPVAALGLQTLSDPQGVQPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTL
                     QQLNASIAVEGLDAKKVAADYLKQKGWTK"
     gene            complement(5044..7341)
                     /gene="bglX"
                     /locus_tag="OQQ19_002899"
     CDS             complement(5044..7341)
                     /gene="bglX"
                     /locus_tag="OQQ19_002899"
                     /EC_number="3.2.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucosidase BglX"
                     /protein_id="HCS1804447.1"
                     /translation="MKWLCSVGIAVSLALQPALADDLFGNHPFTPEARDAFVTELLKK
                     MTVDEKIGQLRLISVGPDNPKEAIREMIKDGQVGAIFNTVTRQDIRAMQDQVMELSRL
                     KIPLFFAYDVLHGQRTVFPISLGLASSFNLDAVKTVGRVSAYEAADDGLNMTWAPMVD
                     VSRDPRWGRASEGFGEDTYLTSTMGKTMVEAMQGKSPADRYSVMTSVKHFAAYGAVEG
                     GKEYNTVDMSPQRLFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRD
                     QWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKSGINMSMSDEYYSKYLPGLIKS
                     GKVTMEELDDAARHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVAR
                     ESLVLLKNRLETLPLKKSATIAVVGPLADSKRDVMGSWSAAGVADQSVTVLTGIKNAV
                     GENGKVLYAKGANVTSDKGIIDFLNQYEEAVKVDPRSPQEMIDEAVQTAKQSDMVVAV
                     VGEAQGMAHEASSRTDITIPQSQRDLIAALKATGKPLVLVLMNGRPLALVKEDQQADA
                     ILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKP
                     NKYTSRYFDEANGALYPFGYGLSYTTFTVSDVKLSAPTMKRDGKVTASVQVTNTGKRE
                     GATVVQMYLQDVTASMSRPVKQLKGFEKITLKPGETQTVSFPIDIEALKFWNQQMKYD
                     AEPGKFNVFIGTDSARVKKGEFELL"
     gene            7537..9252
                     /gene="dld"
                     /locus_tag="OQQ19_002900"
     CDS             7537..9252
                     /gene="dld"
                     /locus_tag="OQQ19_002900"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HCS1804448.1"
                     /translation="MSSMTTTDNKAFLNELARLVGHSHLLTDPAKTARYRKGFRSGQG
                     DALAVVFPSSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDIVIISTL
                     RLDKLHVLGKGEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSG
                     GSLVQRGPAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRH
                     DGRHAHDYDYVHRVRDIEADTPARYNADPDRLFESSGCAGKLAVFAVRLDTFEAEKNQ
                     QVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKYGKDTFLMIDKLGT
                     DKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHL
                     LLKMAGDGVGEAKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSD
                     EVEDILALDIALQRNDTEWYEHLPPEIDSQLVHKLYYGHFMCYVFHQDYIVKKGVDVH
                     ALKEQMLELLQQRGAQYPAEHNVGHLYKAPETLQKFYRENDPTNSMNPGIGKTSKRKN
                     WQEVE"
     gene            complement(9291..10223)
                     /gene="pbpG"
                     /locus_tag="OQQ19_002901"
     CDS             complement(9291..10223)
                     /gene="pbpG"
                     /locus_tag="OQQ19_002901"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311048.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine endopeptidase"
                     /protein_id="HCS1804449.1"
                     /translation="MPKFRVSLFSLALMLAVPLAPQAVAKTAAAITASQPEIASGSAM
                     IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKGVY
                     SRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTR
                     FVEPTGLSVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNH
                     LVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW
                     IETGKVMPVPAAALSYKKQKAAQMAAAGQTAQND"
     gene            complement(10397..10984)
                     /locus_tag="OQQ19_002902"
     CDS             complement(10397..10984)
                     /locus_tag="OQQ19_002902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014170891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YIP1 family protein"
                     /protein_id="HCS1804450.1"
                     /translation="MSHVWGLFSHPDREMQVINRENETISHHYTHHVLLMAAIPVICA
                     FIGTTQIGWNFGDGTILKLSWFTGLALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPS
                     LAHCMVFAGYVATPLFLSGLVALYPLVWLCALVGTVALFYTGYLLYLGIPSFLNINKE
                     EGLSFSSSTLAIGVLVLEVLLALTVILWGYGYRLF"
     gene            11154..11732
                     /locus_tag="OQQ19_002903"
     CDS             11154..11732
                     /locus_tag="OQQ19_002903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416640.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1804451.1"
                     /translation="MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLV
                     VLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFM
                     YGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHL
                     KHWVWLILVVVLVVGVRWWLKRRGKKKPDHQA"
     gene            complement(11862..12623)
                     /locus_tag="OQQ19_002904"
     CDS             complement(11862..12623)
                     /locus_tag="OQQ19_002904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1804452.1"
                     /translation="MAQVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTA
                     REVVSHGVRAEIVQLDLGKLPEGAQALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFD
                     EWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHAL
                     GGLTKAMALELVRHKILVNAVAPGAIATPMNGMDDSDVKPDAEPSIPLRRFGATHEIA
                     SLVAWLCSEGANYTTGQSLIVDGGFMLANPQFNPE"
     gene            complement(12676..>13522)
                     /gene="mdtQ"
                     /locus_tag="OQQ19_002905"
     CDS             complement(12676..>13522)
                     /gene="mdtQ"
                     /locus_tag="OQQ19_002905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001583680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="multidrug resistance outer membrane protein
                     MdtQ"
                     /protein_id="HCS1804453.1"
                     /translation="QAALNTVLQQIEKEQNTIIATDRQLYQNGITSSVEGVETDINAS
                     KTRQQLNDVAGKMKIIEARLSALTNNQTKSLKLKPVALPKVASQLPDELGYSLLARRA
                     DLQAAHWYVESSLSTIDAAKAAFYPDINLMAFLQQDALHLSDLFRHSAQQMGVTAGLT
                     LPIFDSGRLNANLDIAKAESNLSIASYNKAVVEAVNDVARAASQVQTLAEKNQHQAQI
                     ERDTLRVVGLAQARFNAGIIAGSRVSEARIPALRERANGLLLQGQWLDASIQLTGALG
                     GGYKR"
BASE COUNT         3237 a         3779 c         3417 g         3089 t
ORIGIN      
        1 tgctggtcac ttgccgcagg agctaatcct agttttatcg caagccagat gggccacaca
       61 aacgcacaaa tggtattcaa tgtttacgga gcatggatga aagacaacaa tcacgaacag
      121 atagaacttc ttaacagaag actatctgaa agtgtcccat gcatgcccca taagaaagcg
      181 gggtaaaata aaaacttgca aaatcaattg gtttaccttt aatccctgtc acgttacgcg
      241 cgtggcagag gcgttacggg ttgctgaaac cgcaacggac agacggcggt catcgactgt
      301 tcaacgatgc cgatattgac cggatccgcg agatcaaacg ctggatcgac aacggcgtgc
      361 aggtcagcaa agttaaaatg ctgctcagta atgaaaatgt tgatgtgcag aacggctggc
      421 gcgatcagca agaaacatta ctgacctacc tgcaaagcgg caatctgcat agcctgcgaa
      481 cgtggatcaa agagcgcggt caggattacc ccgcccagac actcaccaca catctgttta
      541 ttcctctgcg ccgacggctt cagtgccaac aaccgactct ccaggcgctg ctggcgatcc
      601 tcgacggcgt actgatcaac tacatcgcca tttgtctggc ttcggcacgt agaaaacagg
      661 gtaaagatgc gctggtggtt ggctggaata ttcaggatac cacccgtctg tggctggagg
      721 gctggattgc cagtcaacaa ggatggcgca ttgatgtcct cgcccactcg ctcaatcaac
      781 tacgccctga actattcgaa ggccgtacat tgctggtgtg gtgcggtgaa aatcgaacct
      841 ccgcccaaca gcagcaactc accagttggc aagaacaagg ccatgatatt ttcccactcg
      901 gcatttaatg attcgttaac aaatgcgctt tactgtacaa tcctttcgtt aacataagga
      961 gtgcaatatg cgcatagcta aaattggggt catcgccctg ttcctgttta tggcgttagg
     1021 cggaattggt ggcgtcatgc tcgcaggtta tacctttatt ttgcgtgctg gctaagcgcc
     1081 tgcaccagcc tttcaaacag gcggtctgca atgatcgccg ccagtgccac cagtaacgcc
     1141 ccctggatca catacgcggt attaaatccg ctaagcccga tgatgatggg cgtacccagc
     1201 gtgctggccc ctaccgttga ggcgatcgtc gccgtaccaa tgttgataat caccgaagtt
     1261 cgcacgcccg ccagaatcac cggagccgcc agcggtagct cgaccttacg cagtcgctga
     1321 ccacgactca ttcccatacc tttcgcaact tctgtcacgc tggcatcaat cgctcccagc
     1381 ccggcaagtg tcgcctgcag gacgggcagc acaccgtaaa ggatcaaggc gataatcgct
     1441 ggttgcagac caaagccgat caccggaacg gcaatcgcca gcactgcgac aggcggaaaa
     1501 gtctgtccaa cggcggcaat agtttccacc agtgggcgaa attccgcgcc ccacgggcga
     1561 gtgacagcaa ttccggcacc agtgccaatg atcaccacaa acaaactcga aattcccacc
     1621 agccagaaat gagccagtgc cagagctgca aaactttctt gctgataaac gggtcgtggc
     1681 agttgtggga acaaggcagc aaacagcggc tggctgtaag gcagccagaa aatcagtgcc
     1741 acaaacaaag caatgagcca gaacagcgga tcgcgcaaca tcttcatacg cttacgcctc
     1801 ctccagcaga tcctgaaaat gcagcgtgcc gcaaggctgg ccctgcgtgt tcaccaccgg
     1861 cagcacctcg catccccgcg cgacaaacag ggagagcgca tcgcgtagcg tcatctcttc
     1921 tgccagtgcc tcaccttctg cccgttcttc gcgacacacg taatccgcca cactacgtaa
     1981 cgaaagcagg cgcacaccca gttcgctgcg cccaaaaaac tggcggacaa aatcgtttgc
     2041 cggacgagtc agcatcgtca gcggattgcc ctgctgcacc acttcaccgt gatccatcaa
     2101 taccagatgt tctgccagcc gtagcgcctc atcaatatca tgagtgacca gcacaatggt
     2161 acgccccagc aaacggtgaa tgcgcgtcat ctcttgttgc aacgcgccgc gcgttaccgg
     2221 gtccagtgcg ccaaaaggtt catccatcag taagacttgc ggatcggcag ccagtgcgcg
     2281 cgccactccc acacgttgct gctgaccacc ggaaagctga tgcggataac gctcacgtaa
     2341 atttgactcc agccccagta gcgccattaa ttcgtcgata cgatcgtcaa tccgcgcccg
     2401 cgaccatttt tgtaattgcg gcacggtagc gatgttttgc gccacgctcc agtgggggaa
     2461 caggccaata gattgaatgg catagcccat ccggcggcgc aactccagta ctggcagcga
     2521 gcgaatttct tctccggcaa agcggatcac tccgctgtca tgctccacca ggcggttaat
     2581 cattttcagg gtggtggatt tgccggagcc agatgtgcca atcagcaccg aaaaactccc
     2641 ttcctgaaaa ttgagattga gatcgttaac ggctttttgt gcgccgaaca gtttgctgac
     2701 atggctaaat tcaatcatta cgtttcacct tcagcagtgc gataagcaaa tcgaacagcg
     2761 cgtcggtaag caccgccaga acaattaccg ggatcacccc cagcaacact aaatcaatgg
     2821 cgctgcttag cagcccctgg aaaaccagcg caccaaaacc gcctgcgccg attaacgccg
     2881 caatcaccgc catacctaca gtttgcacca tcaccacccg caggctgcgc agaaataccg
     2941 gtaacgccag tggtaactga acatgcagga atcgctgcgc cccgctcatg cccatcgctc
     3001 tggcactctc cagcacatcg cgcgggatct ggttcaaacc gactaccacg ccgcgcacca
     3061 gcggcagcaa ggcatagagc accagcgcaa tcagtgcggg tgtcattccg gttcctgcta
     3121 tgccgagctt ccccagccac ggaaaggccg tcaccagcgc ggcaagcggc gcaatcaaca
     3181 ggccaaagag cgccaccgaa ggcacggtct gaatgacatt gagcagagaa aaaattgccc
     3241 cctgccgagc agtggaaaag tagcaccaga tgcccaacgg cacaccaatc actaacgcag
     3301 gcagcaccgc accaaacagc aacgtcagat gttgtgccag cgcgtcgtca aacacatcct
     3361 gacggttggc gtattctttc attagtgaga gatcgttaag cgtgccggag tacagcaacc
     3421 acagcggaat aatggcaatc tgcatatgca acaaccagcg ccacagcgga tgcgtggaga
     3481 ttcggcggat ggcatcgcta caggccagca atgccagcgc cgcagccagc cagaaaccac
     3541 tgccgaggct ggtacgcgcc agcgcactgc cattttgcgc cagttgtgtc gccgcctttc
     3601 ccgcgcccca caccagcaat acgaagacga attgcgccag aatgagtgca caaatgctgc
     3661 cttttttacc gggaataaaa caggccgtca gccaggcgca accaacgccc accagcatcc
     3721 agatcgtttg cggccacagc tgccagagat gacgcccctc acccgaaact aaacgattag
     3781 gcgcgtaact gataaacggc agcgccgctg cgattgccgt cagcaacagc agcagcgcca
     3841 gaacaggatt aatacggaaa taagtcacgg gaaattactt cgtccaccct ttttgtttca
     3901 ggtagtcggc agccactttt ttggcatcca gtccttccac agcaatgctg gcattcagtt
     3961 gctgcaatgt ttttgcatcg aggctggcga agactggctg tagccactgt gccatttgcg
     4021 gatactcctt caacaccgac tcacgcacca ctggtgcagg cgcgtagata ggttgcacac
     4081 cttgcggatc gcttaaggtt tgcagcccca gcgccgctac cgggccgtca gtgccgtaag
     4141 ccattgcagc attaacgcca gagatttgct gggcagcggc tttgatcgtc accgccgtgt
     4201 cgccaccagc cagtgacagc aactgatcct gaccgagctt aaagccatag gctttttcaa
     4261 acgcgggtaa cgcatcggcg cgttcgataa actctgccga ggctgccagt ttgaaggtgc
     4321 cgccctcttt cagataacga ctcaggtcgg caagcgaagt gagtttattt ttctctgcca
     4381 catcctgacg cacggcgata gtccaggtgt tatttgcagg cgcgggcgtc agccagatta
     4441 acttgttgtg ctccgaatcg agctttttga ctttctcgta accttgctgc gcgtttttcc
     4501 acgctgcatc gttttcatct ttaaagaaga aagcgccatt gccggtatat tccggataga
     4561 tatccagttc accggaagta atcgccccgc gcaccacagg agtcgttccg agttgcactt
     4621 tattcaccgt cggtacgccg tggctttcca gcacctgcaa gatgatgttg ccgagtagcg
     4681 cgccttcggt atcgattttt gaaccgactt taacggggga agccgcctgt agcggcaggc
     4741 tcacggctgc caacataacc agtgaacctg cccagacctt tgagagtggc atgatgcttt
     4801 cctcattctt ttactgttgt tttcagcgaa ttaagagaaa agcatagttg ataatgacag
     4861 agttagcctg agcggaagga ttcagttgca gaatcagata aatacttaaa gggcatattt
     4921 tgcccggcgt ttcttgccgg atgcggcgta aacgccttat ccggcctaca aaggtcgaaa
     4981 attcagcaag ttaagatatg aacatcaggc aaagggcgca aacgtcgcgc ccttactaaa
     5041 gcattacagc aactcaaact cgcctttctt aacgcgtgcg gaatcagtgc cgataaagac
     5101 attgaacttg ccaggctcgg cgtcatattt catctgttga ttccagaact tcagcgcctc
     5161 gatatcaatc gggaagctga cagtctgagt ttcgcccggt ttcagggtga ttttctcaaa
     5221 gcctttcagc tgcttcactg gacggctcat ggaagccgtc acatcctgca agtacatctg
     5281 tactaccgtg gccccttcgc gtttaccggt gttcgtcacc tgcacgctgg ccgtcacttt
     5341 gccgtcacgc ttcatggtcg gcgcagaaag tttcacatca gagacggtga aagtggtata
     5401 gctcagacca tagccgaacg gataaagcgc cccgttagct tcatcaaaat aacgcgaagt
     5461 gtatttgttc ggcttgtcgg cattatacgg acgaccggtg ttcagatggc tgtagtacac
     5521 cgggatctgc ccgacagaac gcgggaagga catcggcagc ttgccggacg ggttgtaatc
     5581 gccaaacaac acatcggcaa ttgcattacc gccttcagtc cccgcaaacc aggtttccag
     5641 aatcgcatca gcctgctgat cttctttcac cagcgccagc ggacgcccgt tcatcagcac
     5701 cagcaccagc ggtttaccgg tggctttcag cgccgcaatc aagtcacgtt ggctttgcgg
     5761 aatagtgata tcggtacggc tggaggcctc gtgcgccatc ccctgtgctt caccgaccac
     5821 agccaccacc atatcagatt gtttcgccgt ctgcaccgct tcatcaatca tctcttgcgg
     5881 cgagcgcgga tcgactttga ccgcttcttc atactgattc aggaaatcga taatgccttt
     5941 gtcactggta acgttcgccc ctttggcata cagcacttta ccgttttcac cgacggcatt
     6001 tttaatcccg gtcagtacgg tcacggattg atcggcaaca ccggctgcgg accagctgcc
     6061 catcacgtcg cgtttactgt ccgccagtgg cccaaccacc gcaatggtgg ccgatttttt
     6121 cagcggtaac gtttcgagac ggtttttcag caacaccagg ctttcgcgcg ccacttcacg
     6181 tgcttcttta cggtgcaggc ggctttcggc attggtatcc accgggtcag actctttcgg
     6241 ccccaaatgg ctgtatgggt cgttaaacaa tcccatatca tatttaacgt tcagtacatg
     6301 gcgggcagca tcgtccagct cttccatcgt cactttgccg gatttgatca acccaggcag
     6361 atacttcgag taatactcgt cgctcatact catgttgatt ccggatttca gcgccacgcg
     6421 caccgcatct tccgggtctg ccgccgtgcc atgtttaatc agctctttga ttgcaccgtg
     6481 atcggaaacg gtgatgcctt taaagcccca ctggtcgcgc agaacatctt tcagcagcca
     6541 ggaatcggag gtggctggcg tgccgttcag cgagttcagc gccaccatca ccgcgccgct
     6601 gcctgcgtcc agccccgctt tgtacggcgg catataatca ttaaacaggc gctgcggact
     6661 catatcgacg gtgttgtact ctttaccgcc ttctaccgcg ccgtatgcgg caaagtgttt
     6721 gacgctggtc atcaccgagt agcgatctgc cgggctttta ccctgcatcg cttccaccat
     6781 ggttttaccc attgttgagg tgagatacgt atcttcgcca aaaccttcgg aagcacgtcc
     6841 ccagcgcgga tcgcgcgaga catcgaccat cggtgcccag gtcatattca ggccatcatc
     6901 tgccgcttca taagcagaga cacgtccgac cgttttcact gcatcgaggt taaaagacga
     6961 ggccagaccg aggctaatcg ggaacaccgt gcgctgaccg tgcagcacgt cgtaagcaaa
     7021 gaaaagagga attttcaggc ggcttaattc catcacctga tcctgcatgg cgcggatatc
     7081 ctgacgggtt acggtgttga aaatcgcccc aacctgaccg tctttgatca tctcgcggat
     7141 cgcctctttc gggttatccg ggccgacgct gattaagcgc agctgaccaa ttttctcatc
     7201 aactgtcatt ttcttaagca attcggtgac gaacgcatcc cgcgcttcgg gcgtgaatgg
     7261 atggttgccg aataaatcat ccgccagtgc tggctgcagg gccagactca ccgcgattcc
     7321 tactgaacat agccatttca tatggatttt tcttcctctg ttgcccgacg aggcagcgaa
     7381 aatggtgcaa aaaccgtagt ttgccataag catgatggag agagaaaaag aatgctcagt
     7441 ttattgtctg aattttcaaa atattcactc gctgaattgt catacaaggc gctattctag
     7501 tttgtgatat tttttcgcca ccacaaggag tggaaaatgt cttccatgac aacaactgat
     7561 aataaagcct ttttgaatga acttgcccgt ctggtcggtc attcacacct gctcaccgat
     7621 cccgcaaaaa cggcccgcta tcgcaagggc ttccgttctg gtcagggcga cgcgctggct
     7681 gtcgttttcc ctagctcact actggaattg tggcgggtgc tgaaagcctg tgtcaccgcc
     7741 gacaaaatta ttctgatgca ggctgccaat acaggcctga ccgaaggatc gacgccaaac
     7801 ggtaacgact atgatcgcga tatcgtgatc atcagcaccc tgcgtctcga caagctgcac
     7861 gttcttggca agggcgaaca ggtgctggcc tatccgggca ccacgctcta ttcgctggaa
     7921 aaagccctca aaccgctggg acgcgaaccg cactcagtga ttggatcatc gtgtataggc
     7981 gcatcggtca tcggcggtat ttgtaacaac tccggcggct cactggtgca acgtggcccg
     8041 gcgtataccg aaatgtcgtt attcgcgcgt ataaatgaag acggcaaact gacgctggtg
     8101 aaccatctgg ggattgatct gggcgaaacg ccggagcaga tccttagcaa gctggatgat
     8161 gatcgcatca aagatgacga tgtgcgtcac gatggtcgtc acgcccacga ttatgactat
     8221 gtccaccgcg ttcgtgatat tgaagccgac acgcccgcac gttataacgc cgatcctgat
     8281 cggttatttg aatcttctgg ttgcgccggg aagctggcgg tctttgcagt acgtctagat
     8341 accttcgaag cggaaaaaaa tcagcaggtg ttttatatcg gcaccaacca gccggaagtg
     8401 ctgaccgaaa tccgccgtca tattctggct aacttcgaaa atctgccggt tgccggggaa
     8461 tatatgcacc gggatatcta cgatattgcg gaaaaatacg gcaaagacac cttcctgatg
     8521 attgataagt taggcaccga caagatgccg ttcttcttta atctcaaggg acgcaccgat
     8581 gcgatgctgg agaaagtgaa attcttccgt ccgcatttta ctgaccgtgc gatgcaaaaa
     8641 ttcggtcacc tgttccccag ccatttaccg ccgcgcatga aaaactggcg cgataaatac
     8701 gagcatcatc tgctgttaaa aatggcgggc gatggcgtcg gtgaagccaa atcgtggctg
     8761 gtagattatt tcaaacaggc cgaaggcgat ttctttgtct gtacgccgga ggaaggcagc
     8821 aaagcgtttt tacaccgttt cgccgctgcg ggcgcagcaa ttcgttatca ggcggtgcat
     8881 tccgatgaag tcgaagacat tctggcgttg gatatcgctc tgcagcgtaa cgacaccgag
     8941 tggtatgagc atttaccgcc ggagatcgac agccagctgg tgcacaagct ctattacggc
     9001 cattttatgt gctatgtctt ccatcaggat tacatagtga aaaaaggcgt ggatgtgcat
     9061 gcgttgaaag aacagatgct ggaactgcta cagcagcgtg gcgcgcaata ccctgccgag
     9121 cataacgtcg gtcatttgta taaagcaccg gagacgttgc agaagtttta tcgcgagaac
     9181 gatccgacca acagtatgaa tccggggatc ggtaaaacca gtaagcggaa aaactggcag
     9241 gaagtggagt aaaaattacg gatggcatag tatcgccatc cgtcattcac ttaatcgttc
     9301 tgtgccgtct gccccgccgc cgccatttgg gcggcttttt gttttttata gctcaacgct
     9361 gctgctggaa caggcatcac tttaccggtt tcaatccagg tacgcaggcg gctggcatcg
     9421 gcaaaatggg tatatttgcc aaacgcatcc atcactacca gcgccaccgg tttattattg
     9481 ataaccgtac gcatcaccag acaatggccc gccgcattgg taaaaccggt tttggttaac
     9541 tgaatattcc agttatcgcg atacaccaga tggttagtat tgcggaacgg cagcgtatac
     9601 gtcgggttag agaaggttgc catatcttcc cgggtagtac ttaactgccc gatcaacgga
     9661 tattgtttgc tggcaatgag cagtttggtt aagtcacggg cagttgaaac gttatgcacc
     9721 gacaatccgg taggttcaac aaagcgcgtg ttgttcattc cgagcgattt cgctttcgca
     9781 ttcattgcct taataaaggc tttgtaacca ccgggataat ggtgtgcaag gcttgccgcc
     9841 gcgcggtttt ctgaagacat cagcgccagc aacagcatat ctttacggct gatttcgcta
     9901 ttcagtcgta cgcgcgaata gacccctttc atctccggcg tctggctgat atccactttt
     9961 agtttttcat ccagcggcag tcgtgcatcc agcacaacca tcgcggtcat taatttgctg
    10021 atagacgcaa tcggacgcac cagatccggg tggttcgagt agatcacttt gttggtattc
    10081 agatcaacaa tcatcgcgct accggaggca atttcaggtt gtgaagcggt gatagcggct
    10141 gccgttttcg caacggcctg cggtgccaaa ggcacagcca gcatcagggc caggctaaat
    10201 aaagaaactc gaaatttcgg catgatgagc attcagatag tggttcacgc gcacaggttg
    10261 cgcaccgccg gagtaaggat ttactgaggc tagcgacgcc atcataacga gcaaaaagtg
    10321 cgatcgtcaa aggagaatcg tgaggaaatg ctgcattgct gacatttacg ccagcaatgc
    10381 aacgtcaaag aactttctag aacaaacgat aaccgtagcc ccatagtata acggttaggg
    10441 cgagcagcac ttccagtacc agcacgccaa tcgccagcgt cgaactagag aagctaaggc
    10501 cttcctcttt gttgatattc aggaagctcg gaataccaag gtaaagcagg tagccggtgt
    10561 aaaacagcgc caccgtgccg accagcgcac acaaccagac cagtggataa agcgccacca
    10621 aaccgcttaa aaacagcgga gttgcaacgt agcccgcgaa gaccatgcag tgcgcaagtg
    10681 acggacgctg cggataatta cgcgccatcc accagatgac ccgccccatt accgcaaccc
    10741 cagccagcat aacgccataa aacaggacag ccagcgccag tccggtaaac caggataact
    10801 tcaggatagt gccatcgcca aaattccagc caatctgtgt agtgccaatg aaggcgcaaa
    10861 tcaccggaat cgccgccatc agcaaaacgt ggtgggtgta atggtgagaa atcgtttcgt
    10921 tttcgcgatt aatcacctgc atttcacgat cgggatggga aaacagtccc cagacatggc
    10981 tcataccgcc cccttgttgt gagttcatga acctgacagt tcaagtataa gtcagcttgt
    11041 gattattttt tgttcgctca tgtaatttgc accgtctgat gtacgtcctt tttcagcgtg
    11101 aatgatttcc agggtgtatg cttacaggca accaaaggga gacagactgg cctatggatc
    11161 tcaatacact catctcacaa tatggttatg ccgcgctggt gatcggtagc ctggcggaag
    11221 gtgaaaccgt gactttgctg ggaggcgttg cggcacatca ggggctatta aagttcccgc
    11281 tggtggtact ttctgtggcg cttggcggca tgattggcga ccaggtgctt tatctgtgcg
    11341 ggcggcggtt tggcggcaag ctgttacgcc gtttctcgaa acatcaggat aaaattgagc
    11401 gggcgcagaa acttatccaa cgccatccgt atctgtttgt cattggtacg cgctttatgt
    11461 atggctttcg ggtgattggc ccgacgctga ttggtgccag ccagctgccg ccgaaaatct
    11521 ttctgccgct gaatattctc ggcgcatttg cctgggcgtt gatttttacc actattggtt
    11581 acgctggtgg tcaggtgatt gcgccgtggt tgcacaatct cgaccagcat ttgaagcact
    11641 gggtctggtt gattctggtc gtggttctgg tggtgggcgt gcgctggtgg ctgaaacggc
    11701 gcgggaagaa aaagccggat catcaggcgt aaaaccattg ccctgggtaa ggcgttcgcg
    11761 ccgcatccga catccggtgc accatgcctg atgcgacgct tgtgcgtctt atcatgccta
    11821 ccaaaatttt acccattgaa ataaccacgc acctcactgc gctattctgg gttgaactgc
    11881 ggattcgcca acataaagcc gccatccact atcaacgact gcccggtggt gtaatttgcg
    11941 ccctctgagc acagccacgc taccaggctg gcaatctcat gcgttgcgcc aaaacgccgc
    12001 agaggaatcg aaggctccgc gtcgggcttc acgtcgctgt catccatgcc attcattggc
    12061 gtggcgatcg ccccaggcgc gactgcgttc accaaaatct tatgcctgac cagctccagc
    12121 gccatcgctt tggttaaccc accgagcgca tgtttagcgg ctgtgtaggc gctggcatcc
    12181 ggcagcggcg tatgttcatg taccgatgta atgttgatga tgcgaccgcc ctgcccttgt
    12241 ttcaccatct ggcgggccgc aatttgtgag cataaaaatg caccatcgac atcaacggta
    12301 aaaatcttgc gccactcatc gaaagccata tcaagaaacg gcgctttggt cattgcgccc
    12361 gcattattca ccagcacatc aatacgcccc agccgttgaa tgagtttctc cagcgcctgc
    12421 gcaccttctg gcagtttacc gagatccagc tgcacgatct ccgcacgtac gccgtggcta
    12481 actacctcac gcgcggtatc ttttgcccct tcttcatctg agtgccaggt aatgccaata
    12541 tcaaaccctt gctgcgccag taataacgcg cactctttgc cgatccccga atcggaggcg
    12601 gtaataatcg caacctgtgc catcgagttc tccacttaac gctgaataaa cgttaagtat
    12661 agaaggcgca tatcatcagc gtttgtaacc cccgcccaac gcaccagtga gttgaatgga
    12721 ggcatccagc cactgccctt gcaataacag gccattggcc cgctcacgca gcgcggggat
    12781 tctggcttcg ctgacgcggg aaccagcaat gatgcccgcg ttaaagcgcg cctgcgcaag
    12841 acctaccaca cgcaaggtat cgcgctcaat ttgcgcctga tgctggtttt tctccgcaag
    12901 tgtctgaacc tgactggctg cccgcgccac gtcattcacc gcttcaacca ccgctttgtt
    12961 gtagctggcg atagacaagt tgctttcggc ttttgcgata tcgagattgg cgttaagacg
    13021 accactatcg aaaatgggta gcgtcaggcc tgccgtaacg cccatttgct gcgcggaatg
    13081 acggaacaga tcgcttaagt gcaacgcatc ctgttgcagg aaggccatca ggttgatgtc
    13141 aggataaaat gccgcttttg ccgcatcaat ggtgcttagc gatgactcaa cgtaccagtg
    13201 cgccgcctgc aaatctgccc gccgggccag taaggagtac cccagttcat caggaagctg
    13261 gcttgccact ttcggcaacg cgaccggttt aagcttcaat gactttgtct ggttatttgt
    13321 aagtgcgctt aaccgtgcct caataatttt cattttcccc gcgacatcgt tgagctgctg
    13381 ccgggttttg ctggcattaa tatcggtttc cacaccttca actgaagaag taatcccgtt
    13441 ctgatatagc tggcgatcgg tcgcgataat ggtgttctgc tctttttcta tttgctgcaa
    13501 gaccgtgttt aacgccgcct gg
//
LOCUS       DAJVSY010000111        13517 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.111, whole genome shotgun sequence.
ACCESSION   DAJVSY010000111 DAJVSY010000000
VERSION     DAJVSY010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13517)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13517)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13517
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.111"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(181..927)
                     /gene="cutC"
                     /locus_tag="OQQ19_002906"
     CDS             complement(181..927)
                     /gene="cutC"
                     /locus_tag="OQQ19_002906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HCS1804454.1"
                     /translation="MALLEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLK
                     SVRQWVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVD
                     MPRMEKIMAAAGPLAVTFHRAFDMCANPLNTLSNLAELGIARVLTSGQKSDALQGLSK
                     IMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEVHSSAGAWQASPMRYRNQGLSMSS
                     DAHADEYSRYVVDGAAVAEMKGIIERHQAK"
     gene            complement(941..1507)
                     /locus_tag="OQQ19_002907"
     CDS             complement(941..1507)
                     /locus_tag="OQQ19_002907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707763.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HCS1804455.1"
                     /translation="MANWQSIDELQDIASDLPRFTHALDELSRRLGLDITPLTADHIS
                     LRCHQNVTAERWRRGFEQCGELLSENMINGRPICLFKLHEPVQVAHWQFSIVELPWPG
                     EKRYPHEGWEHIEIVLPGDPETLNARALALLSDEGLSLPGISVKTSSPKGEYERLPNP
                     TLAVTDGKTTIKFHPWSIEEIVASEQSA"
     gene            1723..3456
                     /gene="argS"
                     /locus_tag="OQQ19_002908"
     CDS             1723..3456
                     /gene="argS"
                     /locus_tag="OQQ19_002908"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HCS1804456.1"
                     /translation="MNIQALLSEKVRQAMIAAGAPADCEPQVRQSAKVQFGDYQANGM
                     MAVAKKLGMAPRQLAEQVLTHLDLNGIASKVEIAGPGFINIFLDPAFLAEHVQQALAS
                     DRLGVSTPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHKVIRANHVG
                     DWGTQFGMLIAWLEKQQQENAGEMELADLEGFYRDAKKHYDEDEEFAERARNYVVKLQ
                     SGDEYFREMWHKLVDITMTQNQITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKG
                     LAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLYTTTDIACAKYRYETLHADRVL
                     YYIDSRQHQHLMQAWAIVRKAGYVPESVPLEHHMFGMMLGKDGKPFKTRAGGTVKLAD
                     LLDEALERARRLVAEKNPDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNML
                     AFEGNTAPYMQYAYTRVLSVFRKAEINEEQLAAAPVIIREDREAQLAARLLQFEETLT
                     VVAREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENEEVRNSRLKLAQLTAKTLKLGL
                     DTLGIETVERM"
     gene            3633..4121
                     /locus_tag="OQQ19_002909"
     CDS             3633..4121
                     /locus_tag="OQQ19_002909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416391.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HCS1804457.1"
                     /translation="MFKFLVLTLGIISCQAYAEDTVIVNDHDISAIKDCWQKNSDDDT
                     DINVIKSCLRQEYNLVDAQLNKAYGEAYRYIEQVPRTGVKKPDIEQLNLLKKSQRAWL
                     DFRDKECELILSNEDVQDLSDPYSESEWLSCMIIQTNTRTRQLQLYRNSEDFYPSPLT
                     RG"
     gene            complement(4241..4633)
                     /gene="flhe"
                     /locus_tag="OQQ19_002910"
     CDS             complement(4241..4633)
                     /gene="flhe"
                     /locus_tag="OQQ19_002910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlhE"
                     /protein_id="HCS1804458.1"
                     /translation="MRTLLAILLFPLLVQAAGEGMWQASSVGITLNHRGESMSSAPLS
                     TRQPASGLMTLVAWRYQLIGPTPSGLRVRLCSQSRCVELEGQSGTTVAFSGIAAAEPL
                     RFIWEVPGGGRLIPPLKVQRNEVIVNYR"
     gene            complement(4633..6711)
                     /gene="flhA"
                     /locus_tag="OQQ19_002911"
     CDS             complement(4633..6711)
                     /gene="flhA"
                     /locus_tag="OQQ19_002911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HCS1804459.1"
                     /translation="MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFIL
                     DLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHT
                     GAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGM
                     PGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVI
                     NVVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQD
                     VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGCEQKA
                     PAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRK
                     KFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP
                     GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE
                     AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP
                     IQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPGL
                     ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRH
                     IRMTATIGGK"
     gene            complement(6704..7807)
                     /gene="flhB"
                     /locus_tag="OQQ19_002912"
                     /pseudo
     CDS             complement(6704..7807)
                     /gene="flhB"
                     /locus_tag="OQQ19_002912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416394.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FlhB"
     gene            complement(7890..8534)
                     /gene="cheZ"
                     /locus_tag="OQQ19_002913"
     CDS             complement(7890..8534)
                     /gene="cheZ"
                     /locus_tag="OQQ19_002913"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase CheZ"
                     /protein_id="HCS1804460.1"
                     /translation="MMQPSIKPADEHSAGDIIARIGSLTRMLRDSLRELGLDQAIAEA
                     AEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPI
                     DLADARELVTDTRQFLADVPAHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIE
                     RQLLMVLLENIPEQESRPKRENQSLLNGPQVDTSKAGVVASQDQVDDLLDSLGF"
     gene            complement(8545..8934)
                     /gene="cheY"
                     /locus_tag="OQQ19_002914"
     CDS             complement(8545..8934)
                     /gene="cheY"
                     /locus_tag="OQQ19_002914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HCS1804461.1"
                     /translation="MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALN
                     KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAG
                     ASGYVVKPFTAATLEEKLNKIFDKLDM"
     gene            complement(8949..9887)
                     /locus_tag="OQQ19_002915"
     CDS             complement(8949..9887)
                     /locus_tag="OQQ19_002915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000036372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator protein-glutamate
                     methylesterase"
                     /protein_id="HCS1804462.1"
                     /translation="MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDL
                     IKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAI
                     DFVTKPQLGIREGMLAYSEMIAEKVRTAAKASLAAHKPLSAPTTLKAGPLLSSEKLIA
                     IGASTGGTEAIRHVLQPLPLSSPALLITQHMPPGFTRSFADRLNKLCQIGVKEAEDGE
                     RVLPGHAYIAPGDRHMELARSGANYQIKIHDGPVGMLAMRQAGAWTLAQNEASCVVFG
                     MPREAINMGGVCEVVDLSQVSQQMLAKISAGQAIRI"
     gene            complement(9890..10702)
                     /gene="cheR"
                     /locus_tag="OQQ19_002916"
     CDS             complement(9890..10702)
                     /gene="cheR"
                     /locus_tag="OQQ19_002916"
                     /EC_number="2.1.1.80"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005063150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HCS1804463.1"
                     /translation="MRLPGCSRYSFRRISQLIYQRAGIVLADHKRDMVYNRLVRRLRS
                     LGLTDFGHYLNLLESNQHSGEWQAFINSLTTNLTAFFREAHHFPLLADHARRRSGEYR
                     VWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRHEELKNL
                     TPQQLQRYFMRGTGPHEGLVRVRQELANYVDFAPLNLLAKQYTVPGPFDAIFCRNVMI
                     YFDQNTQQEILRRFVPLLKPDGLLFAGHSENFSHLERRFTLRGQTVYALSKD"
     gene            complement(10841..11407)
                     /gene="flhC"
                     /locus_tag="OQQ19_002917"
     CDS             complement(10841..11407)
                     /gene="flhC"
                     /locus_tag="OQQ19_002917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar transcriptional regulator FlhC"
                     /protein_id="HCS1804464.1"
                     /translation="MSEKSIVQEARDIELITLGARLQMLESETQLSRGRLIKLYKELR
                     GSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQC
                     PQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPS
                     RAVKRRKLSQNPADIIPQLLDEQRVQAV"
     gene            complement(11410..11760)
                     /gene="flhD"
                     /locus_tag="OQQ19_002918"
     CDS             complement(11410..11760)
                     /gene="flhD"
                     /locus_tag="OQQ19_002918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416406.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar transcriptional regulator FlhD"
                     /protein_id="HCS1804465.1"
                     /translation="MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMAT
                     TLAALTLPQMVKLAETNQLVCHFRFDSHQTITQLTQDSRVNDLQQIHTGIMLSTRLLN
                     DVNQPEEALRKKRA"
     gene            12539..12967
                     /gene="uspC"
                     /locus_tag="OQQ19_002919"
     CDS             12539..12967
                     /gene="uspC"
                     /locus_tag="OQQ19_002919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspC"
                     /protein_id="HCS1804466.1"
                     /translation="MSYSNILVAVAVTPESQQLLAKAVSIARPVKGHISLITLASDPE
                     MYNQLAAPMLEDLRSVMQEETQSFLDKLIQDAGYPVDKTFIAYGELSEHILEVCHKHH
                     FDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLVPLTGD"
     gene            complement(12974..>13517)
                     /locus_tag="OQQ19_002920"
     CDS             complement(12974..>13517)
                     /locus_tag="OQQ19_002920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="trehalose-6-phosphate synthase"
                     /protein_id="HCS1804467.1"
                     /translation="QIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQ
                     HFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT
                     SALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQI
                     VPRSAESQQRDKVATFPKLA"
BASE COUNT         3448 a         3601 c         3201 g         3267 t
ORIGIN      
        1 attaatgtga atatataaaa tatttttagc acaacgctat gttcactgtc acccgctcaa
       61 cagatcacgg ttatcgtacg ttttttatac tgctcaggga taaaaaaagg cccctgtcga
      121 aattgcaggg gcctggtacg agcaagcatc atattgggcg acatgatgca acggtaaaaa
      181 tcatttggcc tgatggcgtt caatgattcc tttcatttca gcaaccgccg ccccgtctac
      241 gacataacgc gaatactcgt ccgcgtgtgc atctgatgac atggacaatc cttgattacg
      301 ataacgcatc ggtgaagctt gccacgctcc cgcggagcta tggacttcca gcactccggc
      361 atcgaggaag tggtgcaggt tttctgcacg gactcctgct ccggccataa tgattggagc
      421 atcacgatgg gcaataagtt ccataatttt tgataaacct tgcagtgcat ctgatttttg
      481 ccctgatgtc agcacccggg cgatgcccaa ttccgcaaga ttactgagtg tatttaaagg
      541 gttagcgcac atatcgaagg cgcgatgaaa agtcactgcc agcggaccgg cagcagccat
      601 tattttttcc attcgtggca tatcgacatt cccgtcaaca tcgagcacgc ccgtcaccag
      661 tccaggaaaa cctaattcgc ggactgtgcg cacatcctca agaatggcgg caaactcacc
      721 gtcgctgtag caaaaatcac caccgcgtgg gcggataatc ggatgcacag ggatcgtcac
      781 ccactggcgc acggatttca gtacacccaa cgacggcgtt aagcccccct cttttggggc
      841 tgcgcataat tcaactctgt ctgcgccgtt ttgctgcgcc gttagtgcac attccatgct
      901 gtaacagcaa atttccagta atgccatttt tactccttaa ttacgccgac tgctcgctgg
      961 caacgatctc ttcaatggac cacggatgaa acttaatagt tgttttgcca tcggtgaccg
     1021 ccagcgtcgg attcggtaat cgctcatact caccttttgg cgaactggtt ttcactgaga
     1081 tccccggtag gctgagtcct tcatcagaaa gcaatgccag cgcacgggca ttcagcgttt
     1141 ctggatcacc cggcagaacg atttcaatat gttcccaacc ttcgtgtggg taacgttttt
     1201 ccccgggcca cggtagctcc acaatggaaa actgccagtg cgcaacctgt accggttcat
     1261 gcaatttaaa cagacaaatc ggtctgccat tgatcatatt ttctgacaaa agctcgccac
     1321 actgttcaaa accgcgacgc cagcgctcag cggtgacgtt ttgatggcaa cgcaaagaaa
     1381 tgtgatcggc agtcagcgga gtgatatcca accccagacg gcgggagagt tcatctaatg
     1441 cgtgggtaaa tcgcggtaaa tccgatgcaa tatcctgcag ctcgtcgata gattgccagt
     1501 tcgccataat cactcttcgt ctttcagtaa aagcgttaat ttaccctgtt gccctgcgcc
     1561 aaccaaccgc tgatttcacg ccgcttctga tgcaatagtg aaaacggcaa tacgccacgc
     1621 gcacgttgct gacgaaaaca gccatttgca gtatactccc gccctaattt ctttaactgg
     1681 tgcgggcaat ttttgctcgc ttcatcaatg taaggtattc cggtgaatat tcaggctctt
     1741 ctctcagaaa aagtccgtca ggccatgatt gcggcaggcg cgcctgcgga ttgcgaaccg
     1801 caggttcgtc agtcagcaaa agttcagttc ggcgactatc aggctaacgg catgatggca
     1861 gttgctaaaa aactgggtat ggcaccgcga caattagcag agcaggtgct gactcatctg
     1921 gatcttaacg gtatcgccag caaagttgag atcgccggtc caggctttat caacattttc
     1981 cttgatccgg cattcctggc tgaacatgtt cagcaggcgc tggcgtccga tcgtctcggt
     2041 gtttctacgc cagaaaaaca gaccattgtg gttgactact ctgcgccaaa cgtggcgaaa
     2101 gagatgcatg tcggtcacct gcgctctacc attattggtg acgcagcagt gcgtactctg
     2161 gagttcctcg gtcacaaagt gattcgcgca aaccacgtcg gcgactgggg cactcagttc
     2221 ggtatgctga ttgcatggct ggaaaagcag cagcaggaaa acgccggtga aatggagctg
     2281 gctgaccttg aaggtttcta ccgcgatgcg aaaaagcatt acgacgaaga tgaagagttt
     2341 gccgagcgtg cacgtaacta cgtggtaaaa ctgcaaagcg gtgacgaata tttccgcgag
     2401 atgtggcaca aactggtcga catcaccatg acgcagaacc agatcaccta cgatcgtctc
     2461 aacgtgacgc tgacccgtga tgacgtgatg ggcgaaagcc tctacaaccc aatgctgcca
     2521 ggaattgtgg cggatctcaa agccaaaggt ctggcagtag aaagcgaagg ggcgaccgtc
     2581 gtattccttg atgagtttaa aaacaaggaa ggcgaaccga tgggcgtgat cattcagaag
     2641 aaagatggcg gctatctcta caccaccact gatatcgcct gtgcgaaata tcgttatgaa
     2701 acactgcatg ccgatcgcgt gctgtattac atcgactccc gtcagcatca acacctgatg
     2761 caggcatggg cgatcgtccg taaagcaggc tatgtaccgg aatccgtacc gctggaacac
     2821 cacatgttcg gcatgatgct gggtaaagac ggcaaaccgt tcaaaacccg cgcgggtggt
     2881 acagtgaaac tggccgatct gctggatgaa gccttggaac gtgcacgccg tctggtggca
     2941 gaaaagaacc cggatatgcc agctgacgag ctggaaaaac tggctaacgc ggttggtatt
     3001 ggagcggtga aatatgcgga tctctccaaa aaccgcacca cggactacat cttcgactgg
     3061 gacaacatgc tggcgtttga gggtaatacc gcgccataca tgcagtatgc ttacacgcgt
     3121 gtattgtccg tgttccgtaa ggcagaaatt aacgaagagc aactggctgc agctccggta
     3181 atcatccgtg aagatcgtga agcgcaactg gcagctcgcc tgctgcagtt tgaagaaacc
     3241 ctcaccgtgg ttgcccgtga aggcacgccg catgtgatgt gtgcttacct gtacgatctg
     3301 gctggtctgt tctctggctt ctacgagcac tgcccgatcc tcagcgcaga aaacgaagaa
     3361 gtgcgtaaca gccgtctgaa actggcacaa ctgacagcga agacgctaaa gctgggtctg
     3421 gatacgctgg gtattgagac agtagagcgt atgtaatcga tttttcgtga gagtaaagcc
     3481 tgatcagggt tacctgatca ggctttttta ttgccatcta aatgtattct gaaaatggac
     3541 atgccattgt tttctgactg ttggataaga ggccagaagc gtaatatccg gccccaggga
     3601 aacgataacg gttgaattta aggaataccg cagtgtttaa atttcttgta ttaacattag
     3661 gcattatctc ttgccaggct tacgcagaag atacggttat agtaaacgac catgacattt
     3721 cagccatcaa agattgttgg caaaaaaatt cagatgatga tactgacatt aacgtgatca
     3781 aatcatgcct gcgacaagaa tacaatctcg tcgatgcgca attaaataaa gcctatggtg
     3841 aagcttatcg ttatatagaa caagtgccac gcacaggtgt aaaaaaacct gatatcgaac
     3901 aacttaactt gcttaaaaaa tcacagcgag cctggctgga ttttagggac aaagaatgtg
     3961 aattaatcct ttcaaatgag gacgttcagg atttaagtga cccttattct gaatcagaat
     4021 ggctctcatg tatgatcata cagaccaata cgcgaactcg ccagttgcag ctataccgta
     4081 actctgaaga tttttatcca agccctttga caagaggata attcacatct ttttggcatg
     4141 ttttgttgca agctattcct gataaataat tgcaacaaga catcgagcct ttttcactga
     4201 gttattaaac atactcgcga gcgcgtaatt tttttgtcct tcagcgataa ttcacaatca
     4261 cttcattacg ttgtaccttt agcggtggaa ttaaccgccc accgcctggc acttcccaga
     4321 taaatcgcaa cggttctgct gccgctatac cggaaaaggc cacggtggtt ccgctctgcc
     4381 cctctaattc gacacaacga gattgcgaac acaagcgaac ccgcagtcct gaaggtgtcg
     4441 ggccgataag ctgataacgc cacgctacca gcgtcatcaa tcctgaagca ggttgtcgcg
     4501 tagaaagagg cgcagacgac atcgactcac cgcgatgatt tagcgtaatt cctacactac
     4561 ttgcctgcca catcccctcc ccggcggctt gcaccagcag cggaaacaat aatattgcta
     4621 ataaggttct cattatttgc cgccaattgt cgccgtcatg cggatatgtc ggttatcaga
     4681 cagttccaga ttcgacagga ccactaactg cggcaagctg cggcgcagga agcgagacaa
     4741 taatggtcgc agcgcgtggt tcaccaacaa tactggcggc gcacccagca tctcctgacg
     4801 ggatagcgct tcctgagttt gcgccagtaa acgatccgcc agccctggct ccagtcctcc
     4861 cccgccctgc agcgcctgta gtaacaaacg ttccagcggt gtatcgaggc caataacatg
     4921 gacttcatct ttgccaggaa accactgctg ggtaatcgcc cgtcccaacg ccacgcgcac
     4981 gacggcggtt aattcatgtg gatcgctttg gatgggcgca tgttccgcca gcgtttcgag
     5041 aatggtgcgc atatcgcgaa tcggtacttt ttcatcgagg agattttgca gcactttatg
     5101 cagtgtggtg agcgtgacga cgccaggaac gagatcttcc gtcagctttg gcatctcctg
     5161 ggcgacgcga tccaacagct gttgcgcctc ctgacgacca aacagctctg cggcatgctg
     5221 gctaatgagg tggttaagat gcgttgctac caccgtgctg gcctcaacca ctgtgtaccc
     5281 ctgaatctgc gcctgttctt ttagcgcact ttcaatccag atagcattca ggccaaatgc
     5341 cggatcgacg gtcgcctcac caggtaacgt cccggcagcg gttccagggt taatcgccaa
     5401 ccagcgcccc ggataagcat caccactgcc aatctccacg cctttcatca aaatgcgata
     5461 gcgggcaggt tgcagatcca tattgtcgcg aatgtgcacc actggcggca gaaatcccat
     5521 ctcctgggca aatttcttgc ggatactgcg tatacggccc aacaactcac catcctgctg
     5581 gaaatcgacc atcgggatca gtcgataacc cacttccatt cccagagaat cttccagttg
     5641 tacatcgttc cacgtcgctt cgacaacggt attattctct gccattttta ccggtttggg
     5701 ttcggcaggc gctttttgtt cgcatccgcg tatccaccag gccagcccca gcaatccggc
     5761 agtgaacagc aaaaatacca ggttcggcat tccaggcacc aagccgagta aaccgagcac
     5821 ggcggcgctt aacaacataa cgcttgggtt actgaaaagc tgattcacca tctgctcgcc
     5881 aacatcctga tcggtgctga cacgcgtaac gatgaccccc gcggcggtag aaatcaccag
     5941 cgccggaatt tgtgccacca gaccgtcgcc aatggtcaat agcgtataac tttccgccgc
     6001 gtgtcccatg ctcatgccat gttgcagcac gccgaccagc aacccgccga caacgttaat
     6061 gaccatgatg aggatcccgg cgatggcatc gccgcgaaca aacttacttg ccccgtccat
     6121 tgagccgtaa aaatcggctt cctgagtcac ttcggagcgg cgttttttcg cctcatcttc
     6181 accaatcaat ccagcgttaa ggtcggcgtc aatcgccatc tgcttacccg gcataccatc
     6241 gagaacaaag cgcgcaccca cttctgcgat acgcccggca cctttggtaa tgaccataaa
     6301 gttgatgatc acgagaatga caaacaccac gatacctata gcgaaattgc caccaacgag
     6361 gaagtgaccg aacgcttcga ccaccttccc tgccgccgcc gcgccggtat gcccttccat
     6421 caaaatgata cgggttgaag ccacgttaag tgccagacgc aacaacgtag taaacaacag
     6481 aatggtcgga aacgcagcaa actcaagcgt gcgctgggta aacatcgcca ccagcaacac
     6541 catgatcgac aaggcaatat tgaaggtaaa caacaggtcg agtatgaatg cgggcagtgg
     6601 cagcaccatc atcgacaaga tcaacaggat caaaatcggt ccggcaagga tctgccattg
     6661 tgtcgatttc aggtttgcgg gcaggcgcag catcgcggcc agattactca tgggtcggtt
     6721 tctcgttaat aaaatccagg gcttccggca ccggaagatg agtaggttgt acagggcgct
     6781 gtccaccagc cagacgccag cgtttcagtt gccagatcca ggccagcact tccgccaccg
     6841 cggcgtacag ttgacccggg atttgttgac caatctccgc atgtcgatac agcgctcgcg
     6901 ccagcggcgg cgcttcaagc gtcgggacgt tattttcagc gccaatttca cgaatgcgca
     6961 gcgcgaccag ccctgcacct ttagcgacca ctttcggtgc gctcattttg ttttcgtcat
     7021 actgcaacgc taccgaatag tgggtcgggt tattgacaat gacatccgct ttcggcacat
     7081 cggccatcat ccgacgccgt gcggcagctc gctgcatctg acggatccgt cctttaacat
     7141 gggggtcgcc ttcgctttgt ttgaactcat cacgaatatc ctgccgcgac attcgcagct
     7201 ttttcaggtg gctgaagatt tggaaaaaga cgtcaaatcc caccattgga atgacaccaa
     7261 gcaccaccag cagtgcgcat agccctacca aatccatcgc attacccatg gcggtaatcg
     7321 gagactcggc cagtaagcgc atcatctgcg gccagtgatg ccagagaaaa aaccccgtca
     7381 cgctgccaac caagatggtt ttcaaaattg ctttaagcaa ctccgcgcca gtctgtgccg
     7441 agaacatccg tttaatgccc ggtagcgggt tgagtttgga aaacttcggc tgcaaggatt
     7501 ttccgctaaa taccagcccc cccagcatga ccggagaaat gagcgctacc agcaccacgc
     7561 cgctaatcag cggtagcagc gccagcatgg cttctctgat cagcagaata atctgcccga
     7621 ggatcagatt cgggtctttg ataatactgt gatcaaaatg cagcccagcg gagagcatgc
     7681 ccgacaatcg acgggccagc gacacaccgc cgaaccagat aacacacacg cccaccagca
     7741 aaatcagcag tgaggtcagt tcacgggaac gcgggattta gggcttttgc tgccacacat
     7801 caagcatagt gtgcgtttgt cggatgcggc gtcatcgcct tatcagaccg cctgatatga
     7861 cgtggtcacg ccacatcagg caatacaaat caaaatccaa gactatccaa caaatcgtcc
     7921 acctgatcct gactggctac cacaccggct ttgctggtat cgacctgagg tccattaagc
     7981 aaactctggt tttcacgttt tggacgcgac tcctgttccg ggatgttttc caacagcacc
     8041 atcagcaact ggcgttcgat ctcctgaatg acatccatca tccgcttaat aacctgcccg
     8101 gtgagatcct gaaaatcctg cgccatcatg atttccagca gttgcgcgtt agtaaagctg
     8161 gtatgcgcgg gtacatctgc cagaaattgt cgtgtatctg ttaccagttc acgggcgtcg
     8221 gcaaggtcaa tcggatcggc aaaccagtca tcccaacgtt gggttaacgc ttttgctgat
     8281 ttctccattt gatcctgatg cggttgtgac gcctcaacac tgttcagcgc ccgctccgca
     8341 gcctgggcgg tcatctgcac aacatagtac aaacgatcgc gcgcatcggg gatggcttcc
     8401 gccgcttcgg caatggcctg atccagcccc agttcccgca aactgtcgcg cagcatacgc
     8461 gtcaggctgc cgatgcgcgc aatgatatcg ccagctgaat gctcgtcagc aggtttgatt
     8521 gatggttgca tcatagtcgc atcctcacat gtccagttta tcaaagattt tgttgagttt
     8581 ttcctccagc gtcgcggcgg taaatggctt caccacatag ccactggccc ccgcttgcgc
     8641 cgcagcaatg atgttctctt tcttcgcttc tgcagtcacc attaacactg gcaatgccga
     8701 catcgcgcca tccgcacgaa ttgttttcag caattccagg ccatccatat tgggcatgtt
     8761 ccagtcggag ataacaaatc cataaccgcc tgcctgcaac ttattgagag cgtcgacgcc
     8821 atcttccgct tcctcaacat tattgaatcc cagctctttc agcaggttac gcactatgcg
     8881 tcgcatggtg gaaaagtcat ccacaaccaa aaatttaagt tctttatccg ccatttcaca
     8941 ctcctgattt aaatacgtat cgcctgtccg gcactaattt ttgccaacat ttgctggctt
     9001 acctggctaa gatcgaccac ttcgcagaca ccacccatat tgatggcctc gcgcggcatg
     9061 ccgaacacca cgcaacttgc ttcgttttgc gcaagggtcc atgcccccgc ctgacgcatc
     9121 gccaacattc ccaccgggcc gtcgtgaatt ttgatttgat aatttgcgcc actacgcgcc
     9181 agttccatat gccgatcgcc cggcgcaata taggcatgcc ccggcaagac acgttctccg
     9241 tcttcggctt ctttaacccc gatctggcaa agcttattaa gtctgtcggc aaaagagcgg
     9301 gtgaaaccgg gcggcatatg ttgggtaatt aacaatgccg ggctggaaag cggcaacggt
     9361 tgcagtacgt gacgaattgc ctcagttcca cccgttgaag caccaatcgc aatcagtttt
     9421 tcagaactca acaacggacc cgccttcagc gttgtcggtg ctgacaatgg cttatgtgct
     9481 gcaaggctcg cctttgctgc cgtacgcacc ttttcagcaa tcatttcgct atacgccagc
     9541 attccttcgc gaatacccag ttgcggtttg gtgacaaaat ctattgcccc cagctccagc
     9601 gcgcgcagcg tgacttctga tcctttgccg gtcaaggaag aaaccatcac aacgggcatt
     9661 ggacgcaaac gcattaattt ttcgaggaaa tccagtccgt ccatccgcgg catttcaaca
     9721 tccagcgtca gcacatcggg attgaatttc ttaatcaagt cacgcgcgac cagcggatca
     9781 ggcgcggtcg ccaccatttc catgtcgcta tggctgttga tgatttctgt catgatctgg
     9841 cgcatcagtg ccgaatcatc gacagataac accctgattt tgctcatcgt taatccttac
     9901 ttagcgcata caccgtctga ccacgcagcg tgaagcggcg ctcaaggtgg ctaaagtttt
     9961 cagagtgacc cgcaaacagc aatccgtcgg gtttaaggag cggaacaaag cggcgcaaaa
    10021 tctcctgctg ggtattttga tcgaagtaga tcatgacgtt acgacagaag atcgcatcaa
    10081 acggccccgg cacggtgtac tgtttcgcca gtagattcag cggggcaaaa tcaacatagt
    10141 tcgccagctc ctgacgcacg cgtaccagcc cttcatgcgg tcccgtccct cgcatgaaat
    10201 accgttgcag ttgctgcggc gtcaggtttt tcaactcttc atggcgataa ataccgcttc
    10261 tggctttttc cagcacttcg gtgtcgatat cactggcaaa cactttccag cgtccgggcg
    10321 cggtgcccaa tgtgtcagcc agcgtcatcg caatgctgta cggctcttcg ccggttgaag
    10381 ccgccgcgct ccatacgcga tactcgccag aacggcgacg tgcgtgatcc gcgagcagag
    10441 ggaaatgatg tgcctcacgg aaaaatgccg tcagattcgt ggtcagcgaa ttgataaacg
    10501 cctgccactc accgctgtgc tgattagatt ccagcaagtt cagataatga ccgaaatccg
    10561 tcagtcccag cgaacgcaaa cgacgaacca gtcggttgta aaccatgtcg cgtttatgat
    10621 cggccaggac gatcccggct cgttgataga tcaattgact tatccgccga aaactgtacc
    10681 gagaacaacc aggtaaccta ataagataag cacgacatca tccttccact gttgaccatg
    10741 acaggatgtt cagtcgtcag gcgttaacgc gcgattgggg caaaaaaaaa gcagcggtac
    10801 gtcgttaccg ctgctggcat gttgcgccac accgtatcag ttaaacagcc tgtactctct
    10861 gttcatccag cagttgtggg ataatatcgg caggattctg ggaaagttta cgtcttttta
    10921 ctgcccggga tggcggttga cataagctgc aggcaaagct gccaacaggc tggtgagcgt
    10981 gggtaataaa attgccgccg cagcagttgc agctggaaag ttgcagtaat ccactttcaa
    11041 caaaccgcac caatgtccag gcacgggtta atgccagcag tggtccttct tctgcttgtg
    11101 ggcactgttc aaggtataaa cggtaggctt tgatcaccgc atcgacgcca ttacacaaac
    11161 ctgttttcag taaaaactgc catgcattac agaacatcga agcatgaacg ttttgttccc
    11221 aggtcataaa ccagtcggtt gagaatggca gcatgccttt cggcggtggg cttccgcgca
    11281 gttctttata aagttttatc aggcgtccgc gacttaactg tgtttcgctt tccagcatct
    11341 gcaaacgagc gcccagggtg atcaattcaa tatcccgcgc ttcctgaaca atgctttttt
    11401 cactcatgat caggcccttt tcttgcgcag cgcttcttca ggctgattaa catcattcag
    11461 caagcgtgtt gagagcatga tgccggtatg aatttgctgg agatcgttaa cgcgggaatc
    11521 ttgcgtcaac tgagtaatcg tctggtggct gtcaaaacgg aagtgacaaa ccagttgatt
    11581 ggtttctgcc agcttaacca tttgcggaag agtcagtgcc gctaacgttg tcgccatttc
    11641 ttcatttatg ccgagacgaa acatagcgga cgctttgtcc tgaacaatca aacgctgtgc
    11701 aagtagtaaa tatgacaagt tgatgtcata aatgtgtttc agcaactcgg aggtatgcat
    11761 tattcccacc cagaataacc aactttattt ttatgcggtt tcaccgcacc ccgtgatgtc
    11821 gccgggaagc cccggtaaaa aataattagc attagaatag tgcgataagc tgcaataagc
    11881 agaaccacct ttttggttta atatgtcctt acaaatagaa atgggtcttt acacttatct
    11941 aagatttttc ctaaatcgac gcaactgtac tcgtcactac acgcacatac aacggagggg
    12001 ggctgcgatt ttcaataatg tgtgatgcag atcacacaaa acactcaatt acttaacata
    12061 aatgtataag ccatactttt gttttgggtg tatttcaatc tgttaaaaag tttttcgcta
    12121 cgctagcaag caaaaatgaa actggaataa tcgaaatggg atgttgcgca cagttaaaat
    12181 aactcaccgt aaataatcat ctgctataaa taatcacttt catgcaatac cagataagct
    12241 atttttaaac agacacttac cgcacaacaa actaattaaa tacaaagaaa ggcaacaatc
    12301 aacttaatgt taatcaaatg ttttacatat attaaccact tgtttaatgc ggagaatcag
    12361 tacactattt tcttataatt acatttgaaa ttatatgatc accgggagtg attgattaat
    12421 tgtctttact aataatcaga ctaatattta cctgtttgac cgagttggga ttgcgtcgtt
    12481 tctccattag gagtaaagct ttaatgtcac ctgaagttca cagaataagg aacaggttat
    12541 gagctatagc aatattcttg tcgctgttgc ggttacaccg gaaagtcagc aactgctggc
    12601 aaaagcggta tctatcgcca ggccagtaaa gggacacatc agtttaatta ctctcgcttc
    12661 cgacccggaa atgtacaatc aattagccgc gccgatgctt gaagatttac gcagcgtgat
    12721 gcaagaagaa acgcaaagct ttcttgataa gttaattcag gatgcggggt atcccgttga
    12781 caagacgttt attgcctacg gtgagttaag cgaacatatt ctggaagtat gtcacaaaca
    12841 tcatttcgat ttggtgattt gcggtaatca caatcacagt ttcttttcgc gagcatcctg
    12901 ctcggcgaaa agagtgattg cctcaagtga ggtcgatgtg ctgttagttc cacttacggg
    12961 tgattaaccg ctcctacgca agctttggaa aggtagcaac tttatcgcgc tgctggcttt
    13021 ccgcgcttcg cggaactatc tgctttaggt cgctaatgaa gcactcctgc cagtggttaa
    13081 tatcgttttt cacgataacg tccagcattt ctgcatgacg ggaaatacgt tccgccagcg
    13141 acatagtcaa tgcacgatcc agcgcagctg caacttcgtc acgatcgtag gggttaacaa
    13201 ttaacgccga cgttaactcg tttgccgctc ccgcaaattg cgaaagaaca agaacgcccg
    13261 ggttggctgg gtcctgagca gcaacatact cttttgctac caggttcatc ccgtcacgca
    13321 gtggcgtcac taagcccacg tcagagtagc ggaatatttt catcagtaat ttacggtcaa
    13381 aatgctgatt caaataataa agcggcgtcc agcctaattg cccgtattta ccattaattc
    13441 gtccagcttc attttcgagc tgatgacgaa tatcctgata ggcttgcaca tcaccacgcg
    13501 acgttggtgc aatctgg
//
LOCUS       DAJVSY010000112        13504 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.112, whole genome shotgun sequence.
ACCESSION   DAJVSY010000112 DAJVSY010000000
VERSION     DAJVSY010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13504)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13504)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13504
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.112"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..1629
                     /locus_tag="OQQ19_002921"
     CDS             <1..1629
                     /locus_tag="OQQ19_002921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001299181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
                     /protein_id="HCS1804468.1"
                     /translation="SLLFQPTDSAAEDFMKSHVEPTIRDVPALLELAPWFGRKHRDNT
                     LTLKRFSSGVGFWCLGGAAAKNYREKSVDVVCYDELSSFEPDVEKEGSPTLLGDKRIE
                     GSVWPKSIRGSTPKIKGSCQIEKAANESAHFMRFYVPCPHCGEEQYLKFGDDASPFGL
                     KWEKNKPESVFYLCEHHGCVIHQSELDQSNGRWICENTGMWTRDGLTFFSAADNEIPP
                     PRSITFHIWTAYSPFTTWVQIVYDWLDALKDPNGLKTFVNTTLGETWEEAVGEKLDHQ
                     VLMDKVVRYTAAVPSRVVYLTAGIDSQRNRFEMYVWGWAPGEEAFLVDKIIIMGRPDE
                     EETLLRVDVAINKKYRHADGTEMTISRVCWDTGGIDGEIVYQRSKKHGVFRVLPVKGA
                     SVYGKPVITMPKTRNQRGVYLCEVGTDTAKEILYARMKADPTPADEATSYAIRFPDDP
                     EIFSQTEAQQLVAEELVEKWEKGKMRLLWDNKKRRNEALDCLVYAYAALRVSVQRWQL
                     DLAVLAKSREEETTRPTLKELAAKLSGGVNGYSR"
     gene            1613..1819
                     /locus_tag="OQQ19_002922"
     CDS             1613..1819
                     /locus_tag="OQQ19_002922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1804469.1"
                     /translation="MVTVAELQALRQARLDLLTGKRVVSVQKDGRRIEYTAASLDELN
                     RAINDAESVLGTTRRRRRPLGVRL"
     gene            1816..3408
                     /locus_tag="OQQ19_002923"
     CDS             1816..3408
                     /locus_tag="OQQ19_002923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HCS1804470.1"
                     /translation="MKRTPVLIDVNGVPLRESLSYTGGGAGFGGQMAEWLPPSQSADA
                     ALLPALRLGNARADDLVRNNGIAANAVALHKDHIVGHMFLISYRPNWRWLGMRETAAK
                     SFVDEVEAAWSEYAEGMFGEIDVEGKRTFTEFIREGVGVHAFNGEIFVQPVWDTESTQ
                     LFRTRFKAVSPKRVDTPGHGIGNRFLRAGVEVDRYGRAVAYHICEDDFPRSGSGRWER
                     IPRELPTGRPAMLHIFEPVEDGQTRGANQFYSVMERLKMLDSLQATQLQSAIVKAMYA
                     ATIESDLDTEKAFEYIAGAPQGQKDNPLINILDKFSTWYDTNSVTLGGVKIPHLFPGD
                     DLKLQTAQDSDNGFSALEQALLRYIAAGLGVSYEQLSRDYSKVSYSSARASANESWRY
                     FMGRRKFIASRLATQMFSCWLEEALLRGIIRPPRARFDFYQARSAWSRAEWIGAGRMA
                     IDGLKEVQESVMRIEAGLSTYEKELALMGEDYQDIFRQQVRESAEREKAGLSRPVWIA
                     QAYQQQIAESRRPEEETTPRET"
     gene            3398..4903
                     /locus_tag="OQQ19_002924"
     CDS             3398..4903
                     /locus_tag="OQQ19_002924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HCS1804471.1"
                     /translation="MRRNLSHIIAAAFNEPLLLEPAYARVFFCALGREMGAASLSVPQ
                     QQVQLDAPGMLAETDEYMAGGKRPARVYRVVNGIAVLPVTGTLVHRLGGMRPFSGMTG
                     YDGIVACLQQAMADSQVRGILLDIDSPGGQAAGAFDCADMIYRLRQQKPVWALCNDTA
                     CSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYAGHLAQAGVDITLIYSGAHKVDGN
                     QFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVDAVTGTEAAVFEGQSGIEAGLA
                     DELINASDAISVMATALNSNVRGGTMPQLTATEAAVQENQRVMGILTCQEAKGREQLA
                     TMLAGQQGMSVEQARAILAAAAPQQPVASAQSEADRIMACEEANGREQLAATLAAMPE
                     MTVEKARPILAAAPLADAGPSLRDQIMALDEAKGAEAQAEKLAACPGMTVENARAVLA
                     AGSGKAEPVSASTTALFEHFMANHSPAAVRGGVSQTSADGDADVKMLMAMP"
     gene            4940..5287
                     /locus_tag="OQQ19_002925"
     CDS             4940..5287
                     /locus_tag="OQQ19_002925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head decoration protein"
                     /protein_id="HCS1804472.1"
                     /translation="MVTKTITEQRAEVRIFAGNDPAHTATGSSGISSATPALTPLMLD
                     EATGKLVVWDGQKAGSAVGILVLPLEGTETVLTYYKSGTFATEAIRWPDSVDEHKKAN
                     AFAGTALSHTALP"
     gene            5345..6373
                     /locus_tag="OQQ19_002926"
     CDS             5345..6373
                     /locus_tag="OQQ19_002926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HCS1804473.1"
                     /translation="MGLFTTRQLLGYTEQKVKFRALFLELFFRRTVNFHTEEVMLDRI
                     TGKTPVAAYVSPIVEGKVLRHRGGETRVLRPGYVKPKHEFNYQQAVERLPGEDPAQLN
                     DPAYRRLRIITDNLKQEEHAIVQVEEMQAVNAVLYGKYTMEGDQFDTVEVDFGRSEGN
                     NIEQADGKKWSEQDRDTFDPTHDIDLYCDQASGLVNIAIMDGTVWRLLNGFKLFREKL
                     DTRRGSNSQLETAVKDLGAVVSFKGYYGDLAIVVAKTSYVAEDGTEKRYLPEGMLVLG
                     NTAAEGIRCYGAIKDAQALSEGVVASSRYPKHWLTVGDPSCEFTMTQSAPLMVLPDPD
                     EFVVVQVK"
     gene            6425..6808
                     /locus_tag="OQQ19_002927"
     CDS             6425..6808
                     /locus_tag="OQQ19_002927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-packaging protein FI"
                     /protein_id="HCS1804474.1"
                     /translation="MATKEENLNRLRQLAGLLGREADMSGSAADIAQRVSEWEEELAV
                     SPEGIMHSDESGADQNHTDDGEQLNNTDAPDDVKAVRVRKCLQVMGYCPETGRPVELA
                     LRGMRVLVPSSLATAMIQHGTAEYA"
     gene            6801..7154
                     /locus_tag="OQQ19_002928"
     CDS             6801..7154
                     /locus_tag="OQQ19_002928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001204533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1804475.1"
                     /translation="MRDFQNAFDAALAGVDSTIVEVMGLCAQFTSGAQCGSEVQGVFD
                     DPESLGFAGGGVRIEGSSPSLFVRTDTVRAVRRGDTLTINGEIFWVDRVSPDDGGSCY
                     LWLNRGQPPAVNRRR"
     gene            7170..7703
                     /locus_tag="OQQ19_002929"
     CDS             7170..7703
                     /locus_tag="OQQ19_002929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1804476.1"
                     /translation="MAIKGLDQAIDNLSRVRKNAIPAASAMAINRVATTAINQSSSQV
                     ARETKVRRKLVKERSRLKRATVRNPNARIIVNRGDLPVIKLGIRMLGRRPNSILKAGQ
                     HRYQRAFIQRLKNGRWHVMQRVAGKNRYPIDVVKIPMAAPLKQAFDENVDRIRRERLP
                     KELAYALKQQLRIAIKR"
     gene            7700..8095
                     /locus_tag="OQQ19_002930"
     CDS             7700..8095
                     /locus_tag="OQQ19_002930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1804477.1"
                     /translation="MKHTDIRAAVLDALEQHEHGATLFDGRPVVFDEEDFPAIAVYLT
                     DAEYTGEELDADTWRATLHIEVFLPAQVPDSELDQWMESRIYPAMTAIPALAGLITTM
                     VTQGYEYRRDDDMALWSSADLTYSITYEM"
     gene            8103..8855
                     /locus_tag="OQQ19_002931"
     CDS             8103..8855
                     /locus_tag="OQQ19_002931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1804478.1"
                     /translation="MATPNPLEPVKGAGTTLWVYNGKGDAYANPLSDDDWQRLAKVKD
                     LTPGEMTAESYDDNYLDDEDADWTATGQGQKSAGDTSFTLAWKPGEEGQKGLIGWFES
                     GDVRAYKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGKPSVAEERSKITP
                     VSAIKVTPTSGTVAKGKTTTLTVSFEPESATDKTFRAVSADPSKATISVKDMTITVNG
                     VATGKVQIPVVSGNGQFAAVAEVTVTEAGAAG"
     gene            8869..9300
                     /locus_tag="OQQ19_002932"
     CDS             8869..9300
                     /locus_tag="OQQ19_002932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein G"
                     /protein_id="HCS1804479.1"
                     /translation="MFLKTEQFEYNGVSVTLSELSALQRIEHLALLKRRAEQAESCGN
                     LQVSVEDLVRTGAFLVAMSLWHNHPQKTQSPSMNEAVMKIEQEVLTTWPADAIARAED
                     VVLCLSGMIEAVRPDTDITEVAKNNTLTDDDFSAGKSSTAS"
     gene            9327..9740
                     /locus_tag="OQQ19_002933"
     CDS             9327..9740
                     /locus_tag="OQQ19_002933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein T"
                     /protein_id="HCS1804480.1"
                     /translation="MGRPDWRAMLAGMTSTEYADWHRFYRTHYFQDTQLDMHFSGLTY
                     AVLSLFFCDPDMHPSDFSLLVSRHEEEQVERPDEDKMLMQKAAGLAGGVRFGGDGGRD
                     ILSSADVADVMVDDAALMMASAGIPGGVRYVPAGW"
     gene            9721..12294
                     /locus_tag="OQQ19_002934"
     CDS             9721..12294
                     /locus_tag="OQQ19_002934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1804481.1"
                     /translation="MSQPVGDLVIDLSLDAVRFDEQMSRVRRHFSGLDTDARKTASAV
                     EQGLSRQALAAQKAGISVGQYKAAMRTLPAQFTDIATQLAGGQNPWLILLQQGGQVKD
                     SFGGMIPMFRGLAGAITLPMVGVTSLAVATGALVYAWYQGDSTLSAFNKTLVLSGNQS
                     GLTADRMLTLSRAGQAAGLTFNQARESLAALVNAGVRGGEQFDAINQSVARFASASGV
                     EVDKVAEAFGKLTTDPTSGLMAMARQFRNVTAEQIAYVAQLQRSGDEAGALQAANDIA
                     TKGFDEQTRRLKENMGTLETWADKTGKAFKSMWDAILDIGRPESSADMLASAQKAFDE
                     ADKKWQWYQSRSQRRGKTSSFRANLQGAWDDRENARLGLAAATLQSDMEKAGELAARD
                     RAEREASQLKYTGEAQKAYERLQTPLDKYTARQKELNKALKDGKILQADYNTLMASAK
                     KDYESTLKKPSGVKVSAGERQEDRAHAAMLALETELRTLEKHSGVNEKISQQRRDLWE
                     AENQYVVLKEAATKRQLSEQEKSLLAHEKETLEYKRQLAELGDKIEHQKRLNELAQQA
                     ARFEQQQSAKQAAISAKARGLTDRQAQRESEEQRLREVYGDNPAALAKATSALKNTWS
                     AEEQLRGSWMAGMKSGWGEWAESATDSFSQVKNAATQTFDGIAQNMAAMLTGSEQNWR
                     GFTRSVLSMLTEIFLKQAMVGIVGSIGSAIGGAFGGGASASTGTAIQAAAANFHFATG
                     GFTGTGGKYEPAGIVHRGEFVFTKEATSRIGVGNLYRLMRGYATGGYVGGTGSPAQMR
                     RSEGIRFEQNNNVVIQNDGTNGLPGPQMLKAVYDMARKGARDEIQAQMRDGGLFSGGG
                     R"
     gene            12291..12620
                     /locus_tag="OQQ19_002935"
     CDS             12291..12620
                     /locus_tag="OQQ19_002935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1804482.1"
                     /translation="MKTFHWKVKPGMDVASAPSVRKVRFGDGYSQRAPAGLNADLKTY
                     SVTLSVPRWEATALESFLAEHGGWKSFLWTPPYEWRQIKVTCAKWSSRVSMLRVEFSA
                     EFEQVVN"
     gene            12620..13318
                     /locus_tag="OQQ19_002936"
     CDS             12620..13318
                     /locus_tag="OQQ19_002936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HCS1804483.1"
                     /translation="MQDIRQETLNECTRAEQSASVVLWEIDLTEVGGERYFFCNEQNE
                     KGEPVTWQGRQYQPYPIQGSGFELNGKGTSTRPTLTVSNLYGMVTGMVEDMQSLVGGT
                     VVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLSTPTETDG
                     AVFPGRIMLANTCTWTYRGDECGYHGPAVADEYDQPTSDITKDKCSKCLSGCKFRNNV
                     GNFGGFLSINKLSQ"
     gene            13323..>13504
                     /locus_tag="OQQ19_002937"
     CDS             13323..>13504
                     /locus_tag="OQQ19_002937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mov34/MPN/PAD-1 family protein"
                     /protein_id="HCS1804484.1"
                     /translation="MTETESAILAHARRCAPAESCGFVVRAPEGERYFPCVNISGEPE
                     DYFRMAPEDWLQAEMQG"
BASE COUNT         3079 a         3220 c         4340 g         2865 t
ORIGIN      
        1 agccttcttt ttcagcccac ggactcagct gctgaagatt ttatgaaatc tcatgttgag
       61 ccaacgataa gggatgttcc tgcattgctg gagctggctc catggttcgg aagaaaacac
      121 cgcgataata cgctcaccct gaagcgtttt tcctccggtg tgggtttctg gtgtctgggg
      181 ggagcggcag caaaaaacta ccgtgaaaaa tccgtggatg tggtttgtta tgacgagctt
      241 tcctcgttcg aaccggatgt tgaaaaagag ggttcgccaa ccctgctggg ggataaacgt
      301 attgagggct ctgtatggcc aaaatccatt cgcggctcga cgcctaaaat caaaggctcc
      361 tgccagatcg aaaaagccgc taacgagtcg gcacatttca tgcgttttta tgtgccctgt
      421 ccgcactgtg gggaggagca gtatctgaaa tttggcgatg atgcctcgcc tttcggtctt
      481 aagtgggaga agaataagcc agaaagtgtt ttctaccttt gtgagcatca tggctgtgtg
      541 atccatcagt ctgagcttga ccagagtaac gggcggtgga tctgtgaaaa cacgggcatg
      601 tggactcgtg acggtctgac atttttcagc gccgcggata atgaaattcc gccgccgcgc
      661 tccatcacat tccatatctg gacggcgtac agtccgttca ccacctgggt acagattgtc
      721 tatgactggc tggatgcact gaaagatccc aacggcctga aaacctttgt gaacaccacg
      781 ctgggcgaga cctgggaaga ggccgtgggc gaaaaactcg atcaccaggt gctgatggat
      841 aaggttgtgc gttacacggc tgcggtgcct tcccgggtgg tttatctgac ggcgggcatt
      901 gactcgcagc gaaaccgttt tgagatgtat gtctggggat gggctccggg agaggaagcc
      961 tttctggtgg ataaaatcat cattatgggg cgtcccgatg aggaagagac gctgttacgt
     1021 gtggatgtgg cgatcaacaa aaaataccgc catgcagacg gaaccgaaat gaccatttcc
     1081 cgtgtctgct gggacaccgg ggggatcgat ggcgaaattg tctatcagag gtcaaaaaaa
     1141 cacggtgttt tccgggtgct gccggtaaaa ggtgcatctg tttatggcaa gccggtgatc
     1201 accatgccaa aaacccgcaa tcagcggggc gtgtatctgt gcgaagtggg gacggacacc
     1261 gcaaaagaaa ttctctatgc ccgtatgaaa gccgatccca cgcctgcgga tgaagccacg
     1321 tcgtatgcca tccgttttcc tgatgatccg gagatttttt cgcagacaga ggcgcagcaa
     1381 ctggtggcgg aagagcttgt ggagaagtgg gaaaaaggaa agatgcgtct gctgtgggat
     1441 aacaaaaagc ggcgtaacga agcgctggac tgcctggtgt atgcctacgc ggcattacgt
     1501 gtgtccgtgc aacgctggca gcttgatctg gctgtactgg caaaatcccg ggaagaagag
     1561 acgacccggc caacccttaa agaactggca gcgaagctgt ccggaggagt gaatggttac
     1621 agtcgctgaa ctgcaggcgc tgcgtcaggc gcgccttgat ttattaaccg gtaaacgggt
     1681 ggtgtctgtc cagaaagatg gtcgcagaat tgaatatacg gcagcttctc tggatgagct
     1741 taaccgggcg atcaatgatg cggagtcggt actggggaca acccgccgtc gccgtcgtcc
     1801 gctgggagtg aggttatgaa acgaacgcct gtcctgattg atgtgaacgg cgttccgctt
     1861 cgggagagcc tcagctacac cggtggcggt gcaggatttg gcgggcaaat ggcagagtgg
     1921 ttgccaccct cgcagagtgc cgatgcggcc ctgctgcccg cgttgcgtct ggggaatgcc
     1981 cgtgcagatg atctggtgcg caataacgga atagcggcca atgcggtggc cctgcataag
     2041 gatcacattg tcgggcatat gtttctgatt agctaccgtc cgaactggcg ctggctgggg
     2101 atgcgggaga ccgcggcaaa aagttttgtc gatgaggtgg aggcggcctg gtcagaatac
     2161 gcagaaggga tgtttggtga gatcgacgtg gaagggaaac gcacgtttac ggaatttatc
     2221 cgtgaaggtg tgggcgttca tgcgtttaac ggcgaaatct ttgtgcagcc ggtctgggat
     2281 acggagagta cgcaactgtt tcgtacgcgt tttaaagccg tgagtccgaa acgggtggac
     2341 acgccaggac acggtatcgg gaaccgtttt ctgcgggccg gtgtggaggt tgatcgatat
     2401 ggccgtgccg ttgcgtacca tatctgtgag gatgattttc ctcgctccgg gagtggacga
     2461 tgggaacgga tcccgcgtga actacccacc gggcgtccgg ccatgctgca tattttcgag
     2521 ccggtggagg acgggcagac ccgtggagcc aatcagtttt acagcgttat ggaacggctg
     2581 aagatgctgg attccctgca ggcaacacag cttcagtcgg ccatagtgaa ggcgatgtat
     2641 gcagcgacga ttgaaagtga ccttgatacc gaaaaggcct ttgaatatat cgccggtgcg
     2701 ccgcaggggc agaaggataa tccgcttatt aatattctgg ataagttctc cacctggtat
     2761 gacacgaata gcgtgacgct gggcggtgtc aaaattccgc accttttccc cggtgatgat
     2821 ctgaaacttc agaccgcgca ggattcagac aatggatttt cggcgcttga acaggcgctg
     2881 ctgcggtata tcgccgccgg tcttggcgtt tcctacgaac agttgtcccg tgattactcg
     2941 aaggtcagtt actcaagtgc ccgcgcatcc gccaatgagt cgtggcgcta ttttatgggg
     3001 cggcgaaaat ttattgcgtc ccggctggcc acgcagatgt tttcctgctg gctggaagag
     3061 gcacttcttc gggggattat tcgtccgcca cgggcacggt ttgattttta tcaggcgcga
     3121 tcagcctggt cacgggctga gtggattgga gccggaagaa tggccattga cgggctcaag
     3181 gaggttcagg aatcagtgat gcgcattgag gccggactga gcacgtatga gaaagagctg
     3241 gcgctgatgg gcgaggatta tcaggacatt ttccgccagc aggtcaggga atctgcagag
     3301 cgggaaaaag ccggactctc acgtccggtg tggatagcgc aggcgtatca gcagcagata
     3361 gcggagagtc gcaggccgga agaggagaca acaccacgtg agacgtaatc tttcacacat
     3421 tattgcagca gcattcaatg aaccgctgct tctggagccc gcctatgcgc gggttttctt
     3481 ttgcgcgctg gggcgcgaga tgggggcagc aagtctttcg gtaccgcaac agcaggtaca
     3541 gcttgatgct cccgggatgc tggctgaaac ggacgagtac atggccggag gtaaacgacc
     3601 ggcccgtgtt taccgggtgg tgaacggtat tgcggtactg ccggtgaccg gcacgctggt
     3661 gcaccggctg ggggggatgc ggccattttc cggaatgact ggctatgacg gcattgtcgc
     3721 ctgtcttcag caggcaatgg cagatagcca ggtgcggggc atactgctgg acattgacag
     3781 tccgggcggg caggccgccg gcgcgtttga ctgcgctgac atgatttacc gcctccggca
     3841 gcagaagccg gtttgggcac tgtgtaatga cacggcctgt tctgcggcca tgctgctggc
     3901 gtcggcctgc tcccgacggc tggttaccca gacatcccgt atcggttcca ttggcgtgat
     3961 gatgagccat gtcagctatg ccggtcatct ggcgcaggcc ggtgtggata tcacgctgat
     4021 ttactcaggg gcgcacaagg tggatggcaa tcagtttgaa gcgttgccgg cagaggttcg
     4081 ccaggacatg cagcagcgga ttgatgcggc gcgccggatg tttgccgaaa aagtggcgat
     4141 gtttaccggt ctgtctgttg atgcagtcac gggaacagag gccgctgttt ttgaaggtca
     4201 gtccggcatt gaggccgggc tggcggatga attaatcaat gcgtcggatg ccatcagtgt
     4261 gatggccacg gcgctgaaca gtaatgtcag aggaggcact atgccgcaat taactgcaac
     4321 ggaagccgcc gtgcaggaga accagcgagt gatggggatc ctgacatgcc aggaagcgaa
     4381 aggacgtgaa cagcttgcca cgatgctggc agggcaacag ggcatgagcg ttgaacaggc
     4441 ccgggcgatt ctggccgcgg cggcaccgca gcagccggtg gcatccgcgc agagtgaagc
     4501 cgatcgcatt atggcgtgtg aagaagcgaa cggtcgtgaa caactggcgg caacgctggc
     4561 ggcgatgccg gagatgacgg tggaaaaagc ccgcccgatc ctggcggctg caccactggc
     4621 ggatgccggg ccctcacttc gtgatcagat catggccctg gatgaggcaa aaggggcaga
     4681 agcgcaggct gaaaaactgg cggcctgccc gggaatgacc gtggagaacg cccgggctgt
     4741 gctggctgcg ggatcaggta aggccgaacc ggtctctgca tccacaaccg ccctgtttga
     4801 acatttcatg gcgaatcatt caccggcagc ggtgcggggt ggcgtgtcac agacgtcagc
     4861 agacggtgat gcggacgtga aaatgctcat ggccatgcca tgaagtcagt gctgaccatc
     4921 aatatgaggt tttaacaaaa tggtgacgaa aaccatcact gaacagcgtg cggaagtacg
     4981 tatttttgcc ggtaatgatc cggctcatac cgccacaggc agcagcggga tttcttctgc
     5041 aacaccggct ctgacgcccc tgatgctgga tgaagccacc gggaaactgg tggtctggga
     5101 tggacagaaa gccggtagtg cggttggcat actggtactg ccgcttgaag gcacagagac
     5161 ggtgctgacc tattacaagt cggggacctt tgcgacggag gcaatccgct ggcctgacag
     5221 tgtggatgaa cacaaaaagg caaatgcctt tgccggcaca gccctgagtc acacggctct
     5281 gccgtaacac gttatcaggc caccatggcg gcctgactga tttctgaatg aaaggaactg
     5341 atttatggga ttgtttacga cccgccagtt actcggttat accgaacaaa aagtgaaatt
     5401 tcgtgcgctg tttctggagc tgtttttccg ccgtacggtg aatttccaca ccgaagaggt
     5461 gatgctggac agaattaccg gaaaaacgcc ggtggcggcc tatgtctccc cgatcgttga
     5521 aggaaaagtg cttcgccatc gcggtggtga aacccgcgtg ttacgtccgg gctacgtcaa
     5581 gcccaaacac gaatttaatt accagcaggc ggttgagcgc cttcctggtg aagatccggc
     5641 tcagctgaac gacccggcct accgtcgtct gcgtatcatt accgataacc tcaaacagga
     5701 agagcacgcc attgtccagg tggaagaaat gcaggcggtg aatgccgtgc tgtatggcaa
     5761 atacaccatg gaaggggatc agtttgatac tgtcgaggtg gatttcgggc gctctgaagg
     5821 aaataacatt gagcaggctg acggtaaaaa atggtctgag caggaccgtg atacgtttga
     5881 tccgacgcat gatattgacc tctactgcga tcaggccagc ggccttgtga atatcgccat
     5941 tatggacggt acggtctggc gtctgctgaa tggctttaag ctgttccgcg aaaaactgga
     6001 tacccgtcgc ggctcaaatt cacaactcga aacggcagtg aaagatctgg gcgcagtggt
     6061 gtccttcaag gggtattacg gcgatctggc cattgtggtg gcgaaaacgt cttatgtggc
     6121 agaggacggt accgaaaaac gttatctgcc ggagggcatg ctggtgctgg ggaatacggc
     6181 ggcagagggg attcgttgct atggtgccat taaggatgca caggcgttgt ctgaaggagt
     6241 ggtggcttct tcccgttacc cgaaacactg gctgaccgtg ggcgatccgt cctgtgaatt
     6301 caccatgacg cagtccgctc cgctgatggt gctgccggat ccggatgagt ttgtggtggt
     6361 acaggtgaaa taatccgtga gcgggggcga aatgcccccg tgtctttttt cacaggaggc
     6421 tgagatggca acaaaagaag aaaatctgaa tcgtcttcgt caactggctg gcctgctggg
     6481 gcgcgaggcg gatatgtcgg ggagtgctgc ggatattgct caacgtgtgt ctgagtggga
     6541 agaggagctt gctgtttccc cggagggcat tatgcactct gatgagagcg gggctgatca
     6601 aaatcacaca gacgatggtg agcagttgaa caacacggat gctccggatg atgttaaagc
     6661 cgtccgggta cggaagtgcc tgcaagtaat ggggtattgc ccggagacag gtcgtcccgt
     6721 tgagctggcg ttacggggta tgcgtgttct ggtgccatca tcactggcaa cggccatgat
     6781 acagcacgga acggctgaat atgcgtgatt ttcagaatgc ctttgatgct gccctcgccg
     6841 gggtagacag tacgatcgtt gaagtgatgg ggctctgtgc gcagttcacc tcgggggcac
     6901 agtgtggcag cgaagttcag ggggtttttg atgatccgga gtcgctgggg tttgccggtg
     6961 gcggggtccg tattgaagga agcagcccgt cattatttgt gcggacggat acggttcgtg
     7021 ccgtgcggcg tggtgacacg ctgaccatta atggtgagat attctgggtg gatcgtgttt
     7081 ctccggatga cgggggcagc tgttatctct ggctcaaccg tggtcaacca cccgcagtta
     7141 accggcgacg ataaacgcag ggtgaaatta tggcgataaa agggcttgat caggcgattg
     7201 acaatctgag ccgggttcgt aaaaacgcca ttccggcggc ttcagcaatg gccattaacc
     7261 gcgtggccac aacggcgatt aatcagtctt catcacaggt tgcccgggag acaaaggttc
     7321 gccggaaact ggttaaggaa cggtccagac tgaaacgggc gacggtcaga aatccgaatg
     7381 ccagaattat cgttaaccgc ggtgatctcc ctgtgattaa gctggggatc aggatgctgg
     7441 ggcgtcgccc gaacagcata cttaaagccg gtcagcatcg gtatcagcgg gcatttattc
     7501 agcgattaaa aaatggtcgc tggcatgtca tgcagcgtgt ggccgggaaa aaccgttacc
     7561 ccattgatgt ggtgaaaatc ccgatggcgg ccccactgaa acaggcattt gatgagaatg
     7621 ttgaccgtat ccggcgtgaa cgcctgccta aagaactggc atacgcgctg aaacaacaac
     7681 tgaggattgc aataaaacga tgaaacacac tgacattcgt gccgcagtgc tggatgcact
     7741 cgagcagcat gaacacgggg cgacgctgtt tgatggtcgc cccgttgttt ttgacgaaga
     7801 ggattttcct gcgatcgcgg tttatctgac ggatgcagag tataccggtg aagagctgga
     7861 tgcagatacc tggcgggcca cgctgcatat tgaggtgttt ttaccggcac aggtaccgga
     7921 ttcagagctt gatcagtgga tggaaagccg gatttacccg gcgatgaccg cgatcccggc
     7981 actggcagga ctgattacca cgatggttac gcagggctat gagtatcgtc gtgatgacga
     8041 tatggcgtta tggagttctg cagatctgac ttattccatt acatacgaga tgtgaggacg
     8101 atatggcaac accaaatccc cttgagccgg taaaaggtgc cggtaccact ctgtgggttt
     8161 acaacggcaa gggtgatgct tatgcaaacc cgttgtcaga cgatgactgg cagcgactgg
     8221 ctaaggtgaa ggatctgacg ccgggcgaga tgacggcaga atcctacgat gataactacc
     8281 tggatgatga agacgcggac tggaccgcga ccgggcaggg gcagaaatct gcaggtgata
     8341 ccagttttac gctggcctgg aaaccgggag aggaaggcca gaaagggctt ataggctggt
     8401 ttgaaagcgg cgatgtccgg gcctataaaa tccgttttcc gaatggcacg gtggatgtgt
     8461 ttcgtggctg ggtcagcagt atcggtaagg ccgtgacggc gaaagaagtg atcacccgca
     8521 cggtgaaagt cactaacgtg ggtaaacctt ctgtagcgga agaacgcagc aaaattacgc
     8581 cggtcagtgc gattaaggtg acgccgacat ccggtacggt ggcaaaaggg aaaacaacca
     8641 ccctgacggt ttcttttgag ccggaaagtg caaccgacaa gacgttcaga gcggtttccg
     8701 ccgatccgtc gaaagccacc attagtgtga aagatatgac aattacggta aacggcgtgg
     8761 cgacaggtaa ggtgcagatc cctgtggtga gcggaaatgg tcagttcgcc gcagtggctg
     8821 aagtcaccgt tactgaagcg ggcgctgcag ggtaaacgga ggtaatacat gtttctgaaa
     8881 acagaacaat ttgaatataa cggtgtgtct gtcacgcttt ccgaattgtc tgcgctgcag
     8941 cgtatcgagc atcttgccct cctgaaacgg cgtgcagaac aggcagaatc ctgcggcaac
     9001 ctgcaggtaa gcgtggaaga tctcgtcaga accggcgcgt ttctggtggc gatgtccctg
     9061 tggcataacc atccacagaa aacgcagtca ccgtcaatga atgaggccgt gatgaagata
     9121 gagcaggaag tgctcaccac ctggcctgcc gatgccattg cccgggcgga agacgtggtg
     9181 ttgtgcctgt ccgggatgat cgaagctgtt cgtccggata ctgatattac tgaagtggcg
     9241 aaaaataaca cgctgactga tgatgatttt tctgcgggaa agtcttcgac ggcgagctga
     9301 actttgccct cagactggcg cgtgagatgg ggagacccga ctggcgcgcc atgcttgccg
     9361 ggatgacatc caccgaatat gccgactggc accgttttta ccgcacgcat tattttcagg
     9421 atacccagct ggatatgcat ttttccgggc tgacgtacgc tgtactcagc ctgttttttt
     9481 gcgatccgga tatgcatccc tctgatttca gtctgcttgt ctcccggcat gaggaagagc
     9541 aggtggagag gccggatgag gacaaaatgc tgatgcagaa agcggcagga cttgccggag
     9601 gcgtccggtt cggtggggac ggagggcgcg atattttatc gtctgcggat gtggcggatg
     9661 tcatggtgga tgatgccgca ttaatgatgg cttcagcggg gattccggga ggtgtgagat
     9721 atgtcccagc cggttggtga tcttgttatt gacctgagtc tggatgctgt ccgtttcgat
     9781 gagcagatga gccgggtaag gcgtcatttt tcaggtctgg ataccgacgc cagaaaaacc
     9841 gccagtgctg ttgaacaggg cctgagccgc caggcgctgg ctgcacaaaa agccgggatt
     9901 tccgtcgggc agtataaagc ggccatgcga accctgcccg cacagtttac ggatatcgcc
     9961 acgcagcttg caggtggtca gaatccctgg ctgatcctgc tgcaacaggg cggtcaggtg
    10021 aaggactcct tcggcgggat gatccccatg ttcagggggc ttgccggtgc gatcaccctg
    10081 ccgatggtcg gggtcacctc gctggcggtg gcgacaggtg cgctggtgta cgcctggtac
    10141 cagggagatt ccacgctttc agcgtttaat aaaaccctgg ttctttccgg taatcagtcc
    10201 ggactgactg ccgatcgtat gctgactctc tcaagagccg ggcaggcagc agggctgacg
    10261 tttaaccagg cgagagagtc actggcagcc ctggtgaatg ccggtgtgcg tggtggtgaa
    10321 cagtttgatg ccatcaacca gagtgtcgcg cgttttgcgt ctgcatccgg tgtggaggtg
    10381 gataaagtcg ctgaagcctt cgggaagctg accactgacc cgacgtcggg actgatggcg
    10441 atggcgcgcc agttccgtaa cgtgacggca gagcagattg cgtatgttgc acagctgcag
    10501 cgttccggag acgaggccgg ggcattgcag gcggcgaacg atatcgccac gaaaggcttt
    10561 gatgagcaga cccgtcgcct gaaagaaaac atgggaacac tggagacctg ggcggataaa
    10621 acagggaagg cattcaaatc gatgtgggat gccattctgg atatcggtcg tcctgaatcc
    10681 tcagcggata tgctcgccag tgcgcagaag gcatttgatg aggcggataa aaaatggcag
    10741 tggtaccaga gtcggagcca gcgccgggga aagacctcct cttttcgtgc gaaccttcag
    10801 ggggcatggg atgaccggga aaatgcccgt ctgggtctgg cagcggccac gctgcagtcg
    10861 gatatggaaa aagccggtga actggcggca agggaccggg ctgagcgtga ggcgtcacag
    10921 ctgaagtata ccggagaggc gcagaaggcg tatgagcgcc tgcagacgcc gctggataaa
    10981 tataccgccc gtcagaaaga gctgaataag gccctgaaag acggaaaaat cctgcaggcg
    11041 gattacaaca cgctgatggc gtcggcaaaa aaggattatg aatcgacgct gaaaaagccg
    11101 tcaggtgtga aggtgtctgc cggtgagcgc caggaagacc gggcgcatgc agccatgctg
    11161 gcgcttgaaa ccgagctcag gacgctggaa aaacacagcg gtgtgaatga gaaaatcagc
    11221 cagcagcgcc gggatttatg ggaagcggaa aatcagtatg tggtcctgaa agaggccgcc
    11281 acgaaacggc agttatctga gcaggaaaaa tccctgctgg ctcatgagaa agagacgctg
    11341 gagtacaaac gccagctggc tgagctggga gacaagattg aacaccagaa gcggctgaat
    11401 gagctggcac agcaggcggc gcggtttgaa cagcagcaga gcgcgaagca ggcggcaatc
    11461 agcgcaaaag cccgcggcct cactgaccgt caggcgcagc gggagtcgga agagcagcgc
    11521 cttcgtgagg tgtacggtga taatccggct gcgctggcga aggccacatc tgcactgaag
    11581 aacacctggt ctgcggagga gcagcttcgt ggaagctgga tggccgggat gaagtccggc
    11641 tggggcgagt gggcggaaag tgcgacggac agtttttcgc aggttaaaaa cgcggccacg
    11701 cagacctttg acggtattgc acagaatatg gcggcgatgc tgaccggcag cgaacagaac
    11761 tggcgtggtt tcacccgttc tgtgctgtcc atgctgacag agatttttct gaagcaggcg
    11821 atggtgggga tagtcgggag tatcggcagc gccattggcg gtgctttcgg tggtggtgcg
    11881 tctgcctcca cggggacggc cattcaggct gcggcggcga acttccattt cgcgaccggg
    11941 ggatttacgg ggacgggggg gaaatatgaa cctgcgggga ttgttcatcg cggggagttt
    12001 gtcttcacga aggaggcgac cagccggatt ggcgtgggaa atctttaccg gctgatgcgc
    12061 ggctatgcca ccggcggtta tgtcggtggc accggaagtc cggcgcaaat gcggcgttca
    12121 gagggtatca gatttgagca gaacaacaac gtggtgattc agaacgacgg tacgaatggt
    12181 ctgccaggtc cacagatgct gaaggcagtg tatgacatgg cccgcaaggg tgcccgtgat
    12241 gaaattcagg cacagatgcg cgatggtggt ctgttctccg gaggtggacg atgaagacct
    12301 tccactggaa agtgaaaccc ggtatggatg tggcttcagc cccttccgtc aggaaagtgc
    12361 gctttggtga tggctattcc cagcgagcgc ctgccgggct gaatgccgac ctgaaaacgt
    12421 acagcgtgac gctttctgtt ccccgttggg aggccacggc gcttgagtcg tttctggctg
    12481 agcacggggg ctggaaatcc tttctgtgga cgccgcctta tgagtggcgg cagataaagg
    12541 tgacctgcgc aaaatggtcg tcgcgggtca gtatgctgcg tgttgagttc agcgcagagt
    12601 ttgaacaggt ggtgaactga tgcaggatat ccggcaggaa acactgaatg aatgcacccg
    12661 tgcggagcag tcggccagcg tggtgctctg ggaaatcgat ctgacagagg tcggtggaga
    12721 acgttatttt ttctgtaatg agcagaacga aaaaggtgag ccggtcacct ggcaggggcg
    12781 acagtatcag ccgtatccca ttcaggggag tggttttgaa ctgaatggca aaggcaccag
    12841 tacgcgcccc acgctgacgg tttctaacct gtacggtatg gtcaccggta tggtggaaga
    12901 tatgcagagt ctggtcggcg gaacggtggt ccggcgtaag gtttacgccc gttttctgga
    12961 tgcggtgaac ttcgtcaacg gaaacagtga cgccgatccg gagcaggagg tgatcagccg
    13021 ctggcgcatc gagcagtgca gcgaactgag cgcggtgagt gcctcctttg tactgtccac
    13081 gccgacggaa acggatggcg ctgtttttcc gggacgtatc atgctggcca acacctgcac
    13141 ctggacctat cgcggtgatg agtgcggtta tcacggtccg gcagtcgcgg atgaatatga
    13201 ccagccgacg tccgatatca cgaaggataa atgcagcaaa tgcctgagcg gctgtaagtt
    13261 tcgcaataac gtcggcaact ttggcggctt cctttccatt aacaaacttt cgcagtaatc
    13321 ccatgacaga gacagaatca gcgattctgg cgcacgcccg gcgatgtgcg ccagcggagt
    13381 cgtgcggctt cgtggtgaga gcgccggagg gggaaagata ttttccctgc gtgaatattt
    13441 ccggtgagcc ggaggattat ttccggatgg ctccggagga ctggctgcag gcagagatgc
    13501 aggg
//
LOCUS       DAJVSY010000113        13480 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.113, whole genome shotgun sequence.
ACCESSION   DAJVSY010000113 DAJVSY010000000
VERSION     DAJVSY010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13480
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.113"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(103..3324)
                     /gene="carB"
                     /locus_tag="OQQ19_002938"
     CDS             complement(103..3324)
                     /gene="carB"
                     /locus_tag="OQQ19_002938"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HCS1804485.1"
                     /translation="MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRV
                     ILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL
                     ERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAA
                     DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM
                     EVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIG
                     VETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDE
                     LMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQ
                     ESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVD
                     GVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGV
                     REAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLG
                     GGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLE
                     DVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAV
                     ERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQT
                     AVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPA
                     YTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKA
                     TGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRST
                     GEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELD
                     ATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIR
                     RSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK"
     gene            complement(3342..4490)
                     /gene="carA"
                     /locus_tag="OQQ19_002939"
     CDS             complement(3342..4490)
                     /gene="carA"
                     /locus_tag="OQQ19_002939"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HCS1804486.1"
                     /translation="MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILT
                     DPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYL
                     KRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAK
                     EVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTI
                     VPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLA
                     LASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFD
                     GTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK"
     gene            complement(4945..5766)
                     /gene="dapB"
                     /locus_tag="OQQ19_002940"
     CDS             complement(4945..5766)
                     /gene="dapB"
                     /locus_tag="OQQ19_002940"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HCS1804487.1"
                     /translation="MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL
                     LGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIG
                     TTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHH
                     RHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSRESHTGERVPGTIGFATVRAGDIVG
                     EHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNSL"
     gene            complement(5933..6847)
                     /gene="rihC"
                     /locus_tag="OQQ19_002941"
     CDS             complement(5933..6847)
                     /gene="rihC"
                     /locus_tag="OQQ19_002941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside hydrolase RihC"
                     /protein_id="HCS1804488.1"
                     /translation="MHLPIFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEK
                     TTRNALQLLHFWNAEIPLAQGAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPLGIP
                     AFLAIRDALMRAPEPVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCTP
                     NAEFNIAADPEAAACVFRSGIEIVMSGLDVTNQAILTPDYLATLPELNRTGKMLHALF
                     SHYRSGSMQSGLRMHDLCAIAWLVRPELFTLKPCFVAVETQGEFTSGTTVVDIDGCLG
                     KPANVKVALDLDVKGFQQWVAEVLALAS"
     gene            complement(6913..7863)
                     /gene="ispH"
                     /locus_tag="OQQ19_002942"
                     /gene_synonym="lytB"
     CDS             complement(6913..7863)
                     /gene="ispH"
                     /locus_tag="OQQ19_002942"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HCS1804489.1"
                     /translation="MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRY
                     VVDSLRERGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKV
                     HMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEK
                     LSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVL
                     VVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQ
                     NVVARLQQLGGGEAIPLEGREENIVFEVPKELRVDIREVD"
     gene            complement(7865..8314)
                     /gene="fkpB"
                     /locus_tag="OQQ19_002943"
     CDS             complement(7865..8314)
                     /gene="fkpB"
                     /locus_tag="OQQ19_002943"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HCS1804490.1"
                     /translation="MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASL
                     SEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFT
                     AMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPALEA"
     gene            complement(8383..8877)
                     /gene="lspA"
                     /locus_tag="OQQ19_002944"
     CDS             complement(8383..8877)
                     /gene="lspA"
                     /locus_tag="OQQ19_002944"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HCS1804491.1"
                     /translation="MSQSICSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVPLFP
                     SLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGISVILAVMMYRSKATQKLNNIAYA
                     LIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPSR
                     AKKQ"
     gene            complement(8877..11693)
                     /gene="ileS"
                     /locus_tag="OQQ19_002945"
     CDS             complement(8877..11693)
                     /gene="ileS"
                     /locus_tag="OQQ19_002945"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HCS1804492.1"
                     /translation="MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAA
                     KKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPI
                     ELKVEQEYGKPGEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFK
                     TEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVD
                     QDALKAKFAVSNVNGPISLVIWTTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKD
                     LVESVMQRIGVTDYTILGTVKGAELELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHT
                     APGHGPDDYVIGQKYGLETANPVGPDGTYLPGTYPTLDGVNVFKANDIVVALLQEKGA
                     LLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDQKGLRAQSLKEIKGVQWIPDWGQA
                     RIESMVANRPDWCISRQRTWGVPMSLFVHKDTEELHPRTLELMEEVAKRVEVDGIQAW
                     WDLDAKEILGDEADQYVKVPDTLDVWFDSGSTHFSVVDVRPEFAGHAADMYLEGSDQH
                     RGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGADI
                     LRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFDPAKDMVKPEEMV
                     VLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTAKA
                     DSVARRSCQTALYHIAEALVRWMAPILSFTADEVWGYLPGEREKYVFTGEWYEGLFGL
                     ADSEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAVTLYAEPELAAKLTALG
                     DELRFVLLTSGATVADYHDAPADAQQSEVLKGLKVALSKAEGEKCPRCWHYTQDVGKV
                     AEHAEICGRCVSNVAGDGEKRKFA"
     gene            complement(11736..12677)
                     /gene="ribF"
                     /locus_tag="OQQ19_002946"
     CDS             complement(11736..12677)
                     /gene="ribF"
                     /locus_tag="OQQ19_002946"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HCS1804493.1"
                     /translation="MKLIRGIHNLSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGR
                     KRNLPVMVMLFEPQPLELFATDKAPARLTRLREKLRYLAECGVDYVLCVRFDRRFAAL
                     TAQNFISDLLVKHLRVKFLAVGDDFRFGAGREGDFLLLQKAGMEYGFDITSTQTFCEG
                     GVRISSTAVRQALADDNLALAESLLGHPFAISGRVVHGDELGRTIGFPTANVPLRRQV
                     SPVKGVYVVEVLGLGEKPLPGVANIGTRPTVAGIRQQLEVHLLDVAMDLYGRHIQVVL
                     RKKIRNEQRFASLDELKAQIARDELTAREFFGLTKPA"
     gene            complement(12685..12903)
                     /locus_tag="OQQ19_002947"
     CDS             complement(12685..12903)
                     /locus_tag="OQQ19_002947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2575 family protein"
                     /protein_id="HCS1804494.1"
                     /translation="MCRHSLRSDGAGFYQLAGCEYSFSAIKIAAGGHFLPVICAMAMK
                     SHFFLISVLNRRLTLTAVQGILGRFSLF"
     gene            13006..13269
                     /gene="rpsT"
                     /locus_tag="OQQ19_002948"
     CDS             13006..13269
                     /gene="rpsT"
                     /locus_tag="OQQ19_002948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006117633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HCS1804495.1"
                     /translation="MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDK
                     AAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA"
BASE COUNT         3147 a         3807 c         3400 g         3126 t
ORIGIN      
        1 caaaagattt acttaatggg caaaaaaaac ggtcctcatc agagaaccgt attacttatt
       61 cgatcaaatt agcggatgaa aaatatccgc catgacacgc tattatttga tctgcgcgtg
      121 catttcctgc accgaaatta ctttttcggt cgcgtcggca ttcagcgcca tcgcggtagc
      181 gaaaccaccg ttcagggtgg tgtcataatg cactttatat tgcagcgcac tgcgacggat
      241 cacgcgggag tcttcaatcg cgcgacggcc tgaagtggtg ttgatgatgt aggtatattc
      301 gccattcttg atgcggtcct gaatgtgcgg acggccttca tgcaccttgt tcaccagacg
      361 cggattaatg cccgcttcgc ccagcacaat cgccgtgccg tgggtcgcat ccagctcgaa
      421 gccctgtttc agcagttttg ccgccaggtc caccacgcgt tctttatcgc cttcgcgcac
      481 ggaaagcaac gcacgaccgt gtttcttcat ggtggagttg ctgcccagct gcgctttggc
      541 aaacgcttca gcgaaggtgc ggcccacgcc catcacttcc ccggtggagc gcatttctgg
      601 ccctaacagc gggtcaacac ccgggaattt attgaacggc agcaccactt ctttcaccga
      661 gtagtacggc gggataactt ctttggttac gccctgctca gccagcgatt tgccagccat
      721 cacacgcgcc gccacttttg ccagcggtac gccggtggct ttggagacga acggaacggt
      781 acgcgccgca cgcgggttaa cttcaatcag gtagacttcg ttgtttttca ccgcaaactg
      841 cacgttcatc agaccgcgca cctgcaattc gaaggccagt ttctgcacct gctggcgcat
      901 cacatcctga atttcctgac ttaaggtgta ggctggcaga gaacatgcgg agtcaccgga
      961 gtgcacgccc gcctgctcga tgtgctccat gatgccgcca atcagcacca tttcgccgtc
     1021 gcagatggca tccacgtcaa cttctaccgc gtcatcaagg aagtgatcca gcaacactgg
     1081 cgcatcgtta gacacgctga ccgccgtctg gaagtagcga cgcaggtcag cttcgtcata
     1141 gacgatttcc atcgcccgac cgccgagaac gtaagacgga cgtaccacca gcgggtagcc
     1201 aatctctttc gccttctcta ccgccatttc aatagcggta acggtggcgt tcgccggttg
     1261 tttcagtttc agacgctcaa ccgcatgctg gaagcgttca cggtcttctg cacggtcgat
     1321 agcatccggg ctggtgccga taaccggtac gccagcagct tccagcgcgc gcgccagttt
     1381 cagcggggtc tgaccgccgt actgaacgat aacgcctttc ggcttctcaa tacgcacgat
     1441 ttccagcaca tcttccagag ttaccggctc gaagtagagg cgatcggaag tgtcgtagtc
     1501 ggtggagacg gtttccgggt tacagttaac cataatggtt tcgtaaccgt cttcgcgcag
     1561 cgccagcgag gcgtgtacac agcagtagtc gaattcgata ccctgaccga tacggttcgg
     1621 gccgccgccg agaaccatga ttttttcacg gtcggtagac ggattcgctt cgcactcttc
     1681 ttcataagtg gagtacatgt aagcggtgtc ggtggcgaac tctgccgcac aggtatccac
     1741 gcgcttataa accgggtgca ggtcatactg gtcgcgcagc ttgcggattt ccgcttcgcg
     1801 cacgcccgcc agttttgcca gacgcgcatc ggcaaagcct ttgcgtttca gctggcgcag
     1861 gaattcagcg ttcaggccag tgatgcccac ttccgctact ttctcttcca gacgcaccag
     1921 ttcttcaatc tgtaccagga accagcggtc aatattggtc aggttgaaca cgccgtccac
     1981 agacaggccc gcacggaagg catcggcgat gtaccagata cgctctgcgc cagcatcttt
     2041 cagttcgcga cggattttgg ttaacgcttc cgggtcatcg aggctcactt tcgggtcgaa
     2101 tccagtcgca ccgacttcca ggccgcgcag cgctttttgc agggattcct gctgcgtgcg
     2161 accaatcgcc atcacttcgc caaccgattt catctgagtg gtcagacggt cgttagcacc
     2221 agcgaatttt tcgaagttga agcgaggaat tttagtaacc acatagtcga tggacggctc
     2281 gaaggaggcc ggagtacgtc cgccagtgat gtcgttcatc agttcgtcga gggtgtaacc
     2341 caccgccagt ttcgccgcca ctttagcaat cgggaaaccg gtcgctttcg acgccagcgc
     2401 cgaagaacgg gacacgcgtg ggttcatttc gataacaatc aggcgaccgt ttttcgggtt
     2461 caccgcaaac tggacattgg aaccaccggt ttcaacgccg atttcacgca gcaccgccat
     2521 cgaggcgtta cgcatgattt gatattcttt gtcggtcagc gtttgggctg gcgcgacagt
     2581 gatggagtca ccggtatgga tgcccatcgc atcaaagttt tcgatagagc agacgatgat
     2641 gcagttgtcg tttttatcac gcaccacttc catctcgtac tctttccagc cgatcagcga
     2701 ctcatcaatc agcagctctt tggttgggga gagatccaga ccgcgggcgc aaatttcttc
     2761 aaactcttcg cggttataag cgataccgcc gccgctaccg cccatggtaa aggatgggcg
     2821 aataatgcac gggaagccca cgtcagcggc aaccgccagc gcttcttcca tcgtgtgtgc
     2881 gataccggaa cgcgcggttt ccagaccaat tttcttcatc gctacgtcga aacgacggcg
     2941 gtcttctgct ttatcaatcg catcggcggt cgcaccaatc atagtcacgc cgaactcttc
     3001 caacacgccc tgacgctcca gctccagagc gcagttcagc gccgtctgac cgcccatcgt
     3061 tggcagcacc gcgtccgggc gctctttttc aataatcttg cgtactactt cccagtgaat
     3121 cggctcgatg taggtcgcat cggccatttc cgggtcggtc atgatggtcg ccgggttgga
     3181 gttcaccaga atgacgcggt aaccctcttc gcgcagggct ttacatgctt gcgcgccaga
     3241 gtagtcaaac tcacacgcct gaccgataac aatcgggccc gcacccagaa tcaggatact
     3301 ttttatatct gtacgttttg gcatggctct tttactcctg attacttagc ggttttacgg
     3361 tactgctcaa ttaactcgat aaagtggtcg aacaacggcg ctgcgtcgtg tggcccaggg
     3421 ctggcttccg ggtgaccctg gaagctgaac gccggtttat cagtgcgatg aatgccctgt
     3481 aacgtaccgt cgaacaggga tttatgcgtg acacgcaggt ttgcaggtaa tgttgcttca
     3541 tccaccgcaa aaccgtggtt ctgggcggtg atcatcacca cgtttttctc cacatcttta
     3601 accggatggt tgccgccgtg gtgaccaaat ttcattttga cagtcttcgc accgctcgcc
     3661 agcgccagca gctgatgacc gaggcagatg ccgaataccg gaatatcggt ttcgaggaat
     3721 ttctggatgg cggtaatggc gtaatcgcac ggggccgggt cgccaggacc gttggagagg
     3781 aagatgccgt ctggattcat tttcagcaca tcttccgcag aagtttgcgc cggaacgatg
     3841 gtcaggcgac agcctctatc caccagcatc cgcaggatgt tgcgcttggc accaaaatca
     3901 taagccacga cgtggaacgg cagctcgtct tcttttttcg cttctggcag gccgccggtc
     3961 aacgtccagc tcccttgtgt ccagctatag gcttctgcgg tggtcacttc ttttgccaga
     4021 tccatgccat tcagacctgg gaacgcgcgg gctttttcta acgccaacgc cgcatccggg
     4081 ttatcgcctg cgataatgca gccattctgt gcgcctttct cgcgcagtaa acgcgtcagc
     4141 ttacgggtat cgatatcggc aatcgccacg atgttatggc gcttcaggta agaagagagg
     4201 tcttcggtat tacggaagtt gctggcaatc agcggcaggt cgcgaatcac cagaccttgt
     4261 gcatgtacct gagaagattc ttcatcggcg tcattagtgc cgacattgcc aatatgggga
     4321 taagtaagag taacgatttg acgagaatag gaaggatcag tgaggatttc ttgataaccg
     4381 gtcattgaag tattgaaaac gacttcccca accgccgaac ctgttgcccc tatggcccga
     4441 ccgtgaaact gggttccgtc ttccagaacc aatagcgctg acttaatcaa aacaccctcc
     4501 agagaatatt cactcacttt atttgcatat taattcacaa tgatgacgta aatcaatgca
     4561 aatctgctta ccgacgaatt tctggcaaac ggcggcattc tggagatatg ggcgctaaaa
     4621 gtcaacttaa tggcgggatt ttttatatta ttttgtggct catgcatgtt ttacaggcat
     4681 taagcgacaa aaagatcata taacctgttc tggaaaacgc ttgcacagca agaagattgc
     4741 atgaaataaa agggagcagg gaaaagtgga ccaaatggtc aaattttaca ttaaaacaac
     4801 aaaaacagaa gacaaaacat gtaatttttg gcacttatag acaatttaaa aacataacac
     4861 taaaaataaa agggccaaaa ttaaagccct ttataatcaa taaattaaat gtgttatttt
     4921 tgcaccataa caaatatttt gtggttacaa actattgaga tcaagcacat ctcgcatatc
     4981 aaaaagacca ctttccttac cactcaacca caaagccgat cttaccgcgc cgttagcaaa
     5041 tgtcatgcgg ctggacgcct tatgggtgat ctccagacgc tcgccaatat cggcaaacat
     5101 cgcggtatgt tcgccaacga tgtcacctgc acgcacggtg gcaaaaccaa tggtgccagg
     5161 cacacgttca ccggtgtggc tttcacgact gtagaccgcg caatctttca gatctttatc
     5221 aagggcgtgg gcgatcgcct ctcccattgc cagtgcggtg cctgacggcg catcaacttt
     5281 atgtctatga tgtgcttcaa taatttcgat atcggtgtag tcacccatca ctttggctgc
     5341 tttctccagc agcttaagca tgacgttaac gccaacgcta aaattggcgg caaagacaat
     5401 cgcaatatcg gcggcagcgt cacgaatcgc ctgtttaccg gcttcgtcaa accccgtagt
     5461 gccgatcacc atccctttgc catgctggcg acaaaaagcg agatggttca gcgtaccttc
     5521 cggacgggta aaatcgataa acacatcaaa atcatctttt accgcatcga ggctgctttg
     5581 cacggtaacg cctgttttcc ctgcaccagc cagctcaccg gcgtcgctgc ccagtaaaga
     5641 agatccttcg cgctccagcg ccgcgcccag ctgcacgcct tctaatgcca gcgccgcctg
     5701 aatcaactgg cggcccatac gccccccggc tcccgcgatg gcaacgcgga tgtttgcatc
     5761 atgcatagct attctctttt gttaatttgc atagaccgtt ttcagagtaa ccagcgcatc
     5821 gctacgccgc cagccaaaaa cgctgataat tagaaattaa tgataaacag ggagggatat
     5881 cagtgaaagg catgagtcga tgaatgactg catgccgata acatgtgaca ggttacgacg
     5941 ccagagccag cacctcagcc acccactgct ggaagccttt cacatccaga tccaatgcca
     6001 cctttacatt ggctggtttg cccaggcaac cgtcgatatc aaccaccgtc gtgcctgagg
     6061 taaattcgcc ctgagtttcc actgccacaa aacacggttt gagagtgaac aattccgggc
     6121 gcaccagcca ggcaatagcg caaagatcgt gcatacgcag tccactttgc atactgccgc
     6181 tacggtagtg gctaaacagg gcgtggagca tttttccggt gcgattcaac tccggcaaag
     6241 tagcgagata gtcaggggtt aatattgcct gattggtgac atccagaccg ctcatgacga
     6301 tttcgatgcc gctacggaag acacaggcag ccgcttctgg atcggcagcg atattaaact
     6361 cggcgtttgg tgtgcagttg ccgcgaccag cagaaccgcc catgatcacc agacgacgaa
     6421 tatacggttt acattccggg cattgtgaaa gtaacagcgc aatattggtt aacgggccga
     6481 tggccaccag ggtaacgggc tctggtgcac gcatcagggc atcccgaatc gccagaaacg
     6541 ctggtatccc gagcggcttt cggttgtgct caacaaagtc gtagccagcc attcccgatt
     6601 cgccgtgcac agatgccgca tcacgcggtg cgcgtaccag cggcacagcg gctccctggg
     6661 cgagcggaat ctccgcattc cagaaatgca gcagttgcag ggcgttgcgg gtggttttct
     6721 caaccgagac attacccgcg acggtggtca tcagttgcag gtcgagttcg ggtgcaaaaa
     6781 tcgcggcggc aatggcgacg gcatcgtcaa tgccggggtc agtatcgagg aagataggta
     6841 aatgcatgtt ttctccataa aaaatgccgg taacaagacc ggcattttcg cataacttag
     6901 gctgctaatg acttaatcga cttcacgaat atcgacacgc agctctttcg gcacttcgaa
     6961 aacaatgttt tcttcacggc cttccagcgg aatggcttca ccaccgccca gctgctgcaa
     7021 acgtgccacc acattctgca ccagaatatc cggagccgat gcgcccgcag tcacgccgac
     7081 gcatttaacc tctttcaccc actcttcctg gatgtctttc gcatcgtcaa tcaaaaacgc
     7141 gcgtttgccc atacgctggg ccagctccgc cagacggttg gagttggagg agtttttcga
     7201 accgaccacc aacacaactt ccgcctgttc tgccagggcg cgtaccgctt cctgacggtt
     7261 agtcgtggcg tagcagatgt catctttgcg cggaccgaca attttcggga agcgtttacg
     7321 cagcgcgtcg atcacatcag acgtgtcatc caccgacagc gtggtctggg tcataaagga
     7381 gagcttctct tcgtttttga ccgtcagttt ccacacatcg tccggcgatt cgaccagata
     7441 cattccccct tccgggttac tgtactggcc cattgtccct tccacttccg ggtgcccggc
     7501 gtgaccgatg agaatagatt cttcgccacg gcgactggcg cgggcgactt ccatatgcac
     7561 tttggtcacc agcggacagg tcgcgtcaaa taccgtcaaa tcgcgacttt ttgcttcgtt
     7621 acgtaccgcc tgagaaacac cgtgtgcgga gaaaatcagg atcgcgccgt ccggtacttc
     7681 gctaatctgc tcaataaaga tagccccacg ctcacgcaag ctatcgacca catagcggtt
     7741 atgtaccact tcgtgacgga catatatcgg tgcgccgtaa atggccagcg cgttttcaac
     7801 aatgctgata gcgcggtcta ccccggcaca aaaaccacgc gggttggcca acaggatctg
     7861 catgttacgc ctccaatgcc ggatcgattt ccagcacttc aatatcaaaa tgaacggtct
     7921 gcccggccag aggatggttg aaatcaacgg taatggagtc gccgttaatt tcgcggatca
     7981 cgccaggcat ctcactgcca tccattgcgg taaaaagcat gattgcgcca atttctggct
     8041 cgcctgcatc cataaattca cggcgggaga agtactgaat caggtccggt gacggcacgc
     8101 caaacgccgc atctggctcc aacgagaagg tggttttatc gcccactttc agccccaaca
     8161 ggtgttgctc cagcccttca gaaagagaag catcacccag gcggaacagc gccggtttac
     8221 cgttgttgcg ggtagactcg gcggtggtgc catcgtcgag ttttagcgtg aagtgcacca
     8281 ggacggcgct attgctctgt acagattcag acatgcaggt ttgctcttat atttgaggat
     8341 ttttgccgga tgcggcgtaa acgccttatc cggcagggtt tattattgtt ttttcgctct
     8401 agaaggcaaa aaaccttcca gcacaatcag tgccgcaccg acacagatgg cagtatcggc
     8461 aaggttgaag gtggcgaagt gccagtcgcc gacgtagaag tcgatcatat cgacaacgaa
     8521 gccgtgccac aggcggtcga acaggttgcc cagcgcgccg ccaataatca gcgcgtaagc
     8581 gatattgttt agcttctgcg tggccttcga gcgatacatc atcactgcca ggatcacgct
     8641 aataccaatc gcaataccgg caaagaacca acgctgccag ccgccgctat cggcaaggaa
     8701 actaaacgcc gcgccatagt tacgcgcata atgcagatta agcgacggga acagcgggac
     8761 cgtatccccc agagcaaagt tctggaggat caggtatttg ctgcccagat cgataatcag
     8821 cacgactacc accagccaca gccagcgtag ccctgttgaa cagatcgatt gactcatcag
     8881 gcaaacttac gtttttcacc gtcaccggcg acgttgctga cacagcggcc gcagatttct
     8941 gcgtgttccg ccaccttgcc gacatcctgg gtgtagtgcc agcagcgtgg gcacttctca
     9001 ccttcggctt tactcaacgc gactttcagc cctttgagta cttcgctctg ctgagcatca
     9061 gcaggtgcgt cgtgatagtc tgcaacggta gcgccggagg tcaacaggac aaatcgtaat
     9121 tcatcgccca gcgcggtcag tttcgccgcc agttccggtt ctgcatacaa ggttactgcc
     9181 gcttccagcg agccccccac tttcttgtcg gcacgcgctt gctcaatgac tttgttcact
     9241 tcgccacgca ctttcaacag ctcgtcccag aacgcatcgt tcatcgcttc gctgtctgcc
     9301 aggccaaaca ggccttcgta ccactcaccg gtgaagacgt atttttcacg ttcgcccggc
     9361 aggtagcccc acacttcatc agcggtgaag gagaggattg gtgccatcca gcgcaccagc
     9421 gcttctgcga tgtgatacag cgcagtctgg cagctacgac gcgccacact gtccgctttg
     9481 gcggtgtact gacggtcttt gatgatgtcg aggtagaagg aacccatctc aacggagcag
     9541 aagcgcatca gacgctgtac cacttcgtgg aaatcgtatg cttcgtacgc cttgaggatg
     9601 tcttcctgtg ccgctttcgc acaacctacg gcccagcgat ccagtaccac catctcttcc
     9661 ggtttcacca tatcttttgc tggatcaaaa ccgttcaggt ttgccagcag gaagcgcgcg
     9721 gtgttacgga tacgacgata gctatcggca gcacgtttca ggatctcgtc agaaacggcc
     9781 atttcaccgg tgtagtcggt tgatgccacc cacagacgca gaatatccgc gcccagtttg
     9841 ttcatcacat cctgcggcga aacggtattg ccgatggatt tagacatctt gcggccctga
     9901 ccatccacgg taaagccgtg ggtcagtacc tgacgatacg gcgctttgcc tttcatcgcg
     9961 gtggagatca ttagggaaga catgaaccaa ccacggtgct ggtcagaacc ttccagatac
    10021 atgtccgctg cgtgaccggc aaattccgga cgcacgtcaa caacagaaaa gtgggtagat
    10081 ccggagtcaa accatacatc caatgtgtcc ggcactttca cgtactgatc agcttcatcg
    10141 ccgaggatct ctttcgcatc aagatcccac cacgcctgga tgccgtcaac ttcaacgcgt
    10201 tttgccactt cttccattag ttcgagagta cgcggatgca gctcttccgt gtctttgtgc
    10261 acgaacagtg acatcggtac gccccaggtg cgctgacggg agatacacca gtcaggacgg
    10321 ttagcaacca tcgactcgat acgcgcctgg ccccagtccg ggatccactg cacgcctttg
    10381 atctctttca gtgactgcgc acgcagacct ttctgatcca tgctgacgaa ccactgcggc
    10441 gtcgcgcgga agatgatcgg cgttttgtga cgccagcagc acggatagct gtgctgcatt
    10501 ttctcaacgt gcagcagcgc gcctttttcc tgcagcagcg caacgacgat gtcgttcgct
    10561 ttgaagacgt tcacgccatc cagcgtcgga taagtgcccg gcagataagt gccgtccggg
    10621 ccaaccgggt tagcggtttc caggccgtat ttctgaccga tcacatagtc gtccgggccg
    10681 tggccaggcg cggtgtgaac ggcaccggta ccggcatcca gggtaacgtg atcgccgagg
    10741 attgccggaa cgtcgaagcc cataaacgga tgggtaaagc gcagcaactc aagctccgca
    10801 ccttttaccg tgccgagaat ggtgtaatcg gtcacgccga tacgctgcat tacgctttca
    10861 accagatctt tcgccagaat cacggcctga ccgtcgatct gcaccagcgc atagtcgaaa
    10921 tcaggtgcaa tagagattgc gcggttcgca ggcagagtcc acggcgtagt ggtccagatc
    10981 accagcgaga ttgggccgtt aacgttgctt acggcaaatt ttgctttcag tgcatcctga
    11041 tcgaccgcct gaaaagcaac gtcgatggac ggagaagttt tgtcgtaata ctcaacttcc
    11101 gcttccgcca gcgcagaacg gcagtcaacg caccagtgta ccggcttcgc gcctttgtgc
    11161 aggtgaccgt tgccgatgat tttgcccagc gcgcggatga tgttggcttc agttttgaag
    11221 tccatggtca ggtacgggtg cgaccagtcg cccagcacgc ccagacggat aaagtctttg
    11281 cgttgaccgt caacctgggt cgccgcgtat tcgcggcact tggcgcggaa ctcggcggcg
    11341 gtgaatttct cacccggctt accgtattct tgctctactt tcagctcgat cggcagaccg
    11401 tggcagtccc agccaggcac atacggcgag tcataaccgg aaagcccttt ggacttcacg
    11461 ataatgtctt tcagaatctt gttaaccgag tgaccaatat gaatgctgcc attcgcataa
    11521 ggagggccat catgcagaat gaaggttttt ttgccttttt tagccgcacg gatgatgccg
    11581 tacagatcat catcagtcca acgcgccagc attcccggtt cgcgcttggc gagatcgcca
    11641 cgcatcggga accctgtttc cggcaaattc agggttgatt tatagtcact catcagattc
    11701 tcggttccgt gtttcggttt gattacataa caggcttaag ccggttttgt tagcccaaaa
    11761 aattcgcggg cggttaattc atcacgcgca atctgcgctt tcagttcgtc cagcgacgca
    11821 aatcgctgct cattgcgtat ttttttacgc agcactactt gtatatggcg accgtaaagg
    11881 tccattgcaa catctaacaa atgcacttcc agctgctggc gaataccggc aaccgttggg
    11941 cgtgttccga tgtttgccac gccgggtaac ggcttttcac cgaggcccag cacttctacc
    12001 acataaaccc ctttcaccgg ggaaacctga cggcgtagcg gtacattcgc cgtcgggaaa
    12061 cctatagtgc gccctaattc atcaccgtgg actacacgcc cggagatggc aaacgggtgc
    12121 cccagtaaac tttctgccag agccagattg tcatccgcca gcgcctgacg cacagcggtg
    12181 ctgctaatac gcacgccacc ttcgcaaaaa gtttgcgtac tagtgatatc gaagccgtat
    12241 tccatgccag ctttctgtaa taacaagaaa tcgccttcac gaccagcgcc aaagcggaaa
    12301 tcatccccta cggcaagaaa ttttacgcgc aaatgcttca ccagaagatc gctgatgaaa
    12361 ttttgcgcgg ttaacgccgc gaaacgcctg tcgaaacgca cgcacagcac gtaatcaacg
    12421 ccacactctg caaggtaacg cagtttttcc cgcagccggg tcagtcttgc cggggcttta
    12481 tcggtagcaa acagttccag tggttgaggt tcaaaaagca tcaccatcac cggtaagttg
    12541 cgcttgcgcc cttcttcctg caagccctgt aacagcgcgc gatgaccgcg atgcacgccg
    12601 tcgaaattac caatagtcag cacacaccct tcttgcgggg cctggctgag attatgtatg
    12661 ccgcgtatca gcttcatgtc tggctcaaaa cagtgaaaat cgtccgagta taccttgtac
    12721 agcggtcaag gttaaccggc gattgagtac cgaaatcaga aagaagtggc ttttcattgc
    12781 catggcgcaa atcacgggaa gaaagtgacc gcctgctgca atttttatcg cggaaaagct
    12841 gtattcacac cccgcaagct ggtagaatcc tgcgccatca ctacgtaacg agtgccggca
    12901 cattaacggc gcttatttgc acaaatccat tgacaaaaga aggctaaaag ggcatattcc
    12961 tcggcctttg aattgtccat atagaacaca tttgggagtt ggaccttggc taatatcaaa
    13021 tcagctaaga agcgcgccat tcagtctgaa aaggctcgta agcacaacgc aagccgtcgc
    13081 tctatgatgc gtactttcat caagaaagta tacgcagcta tcgaagctgg cgacaaagct
    13141 gctgcacaga aagcatttaa cgaaatgcaa ccgatcgtgg accgtcaggc tgctaaaggt
    13201 ctgatccaca aaaacaaagc tgcacgtcat aaggctaacc tgactgcaca gatcaacaaa
    13261 ctggcttaat cgccaatttg ctgaagcttt gtgaaaaagc ccgcgcaagc gggttttttt
    13321 atgcctgctg cttttatgat gcgtgagaga acacactacc ggttgccaga tagtcaaaag
    13381 atgctggctt ttgcagacac gccgttacac tttctgaact cttcgtggct taagaatcgt
    13441 agaaccatcg gctgatacat tctgaacaag aatatctact
//
LOCUS       DAJVSY010000114        13367 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.114, whole genome shotgun sequence.
ACCESSION   DAJVSY010000114 DAJVSY010000000
VERSION     DAJVSY010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13367
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.114"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(171..1094)
                     /gene="dmlR"
                     /locus_tag="OQQ19_002949"
     CDS             complement(171..1094)
                     /gene="dmlR"
                     /locus_tag="OQQ19_002949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310535.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator DmlR"
                     /protein_id="HCS1804496.1"
                     /translation="MNNLPLLNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLE
                     QTLNVVLLHRTTRRVTITEEGERIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISS
                     FGFGRQVVAPALSALAKAYPQLELRFDVEDRLVDLVNEGVDLDIRIGDDIAPNLIARK
                     LATNYRILCASPEFIAQHGAPKHLTDLSALPCLVIKERDHPFGVWQLRNKEGHHAIKV
                     TGPLSSNHGEIVHQWCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPANVWAVYVS
                     RLATSAKVRITVEFLRQYFAEHYPNFSLEHA"
     gene            1197..2282
                     /gene="dmlA"
                     /locus_tag="OQQ19_002950"
     CDS             1197..2282
                     /gene="dmlA"
                     /locus_tag="OQQ19_002950"
                     /EC_number="1.1.1.83"
                     /EC_number="1.1.1.85"
                     /EC_number="1.1.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional
                     D-malate/3-isopropylmalate/tartarate dehydrogenase"
                     /protein_id="HCS1804497.1"
                     /translation="MMKTMRIAAIPGDGIGKEVLPEGIRVLQAAAERWGFDLSFEQMG
                     WASCEYYSHHGKMMPDDWHEQLSRFDAIYFGAVGWPDTVPDHISLWGSLLKFRREFDQ
                     YINLRPVRLFPGVPCPLAGKQPGDIDFYVVRENTEGEYSSLGGRVNEGTEHEVVIQES
                     VFTRRGVDRILRYAFELAQSRPRKTLTYATKSNGLAISMPYWDERVEAMAENYPEIRW
                     DKQHIDILCARFVMQPERFDVVVASNLFGDILSDLGPACTGTIGIAPSANLNPERTFP
                     SLFEPVHGSAPDIYGKNIANPIATIWAGAMMLDFLGNGDERFQQAHNGILAAIEEVIA
                     HGPKTPDMKGNATTPQVADAICKIILR"
     gene            2532..4142
                     /gene="yeaV"
                     /locus_tag="OQQ19_002951"
     CDS             2532..4142
                     /gene="yeaV"
                     /locus_tag="OQQ19_002951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310537.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter YeaV"
                     /protein_id="HCS1804498.1"
                     /translation="MMSNVKKKDVPLISISLVAILFIAAALSLFPQQSADAANAIYTF
                     VTRTLGSAVQVLVLLAMGLVIYLATSKYGNIRLGEGKPEYSTLSWLFMFICAGLGSST
                     LYWGVAEWAYYYQTPGLNIAPRSQQALEFSVPYSFFHWGISAWATYTLASLIMAYHFH
                     VRKNKGLSLSGIIAAITGVRPQGPWGKLVDLMFLIATVGALTISLVVTAATFTRGLSA
                     LTGLPDNFTVQAFVILLSGGIFCLSSWIGINNGLQRLSKMVGWGAFLLPLLVLIVGPT
                     EFITNSIINAIGLTTQNFLQMSLFTDPLGDGSFTRNWTVFYWLWWISYTPGVAMFVTR
                     VSRGRKIKEVIWGLILGSTVGCWFFFGVMESYAIHQFINGVINVPQVLETLGGETAVQ
                     QVLMSLPAGKLFLAAYLGVMIIFLASHMDAVAYTMAATSTRNLQEGDDPDRGLRLFWC
                     VVITLIPLSILFTGASLETMKTTVVLTALPFLVILLVKVGGFIRWLKQDYADIPAHQV
                     EHYLPQTPVEALEKTPVIPAGTVFKGDN"
     gene            4174..5298
                     /gene="yeaW"
                     /locus_tag="OQQ19_002952"
     CDS             4174..5298
                     /gene="yeaW"
                     /locus_tag="OQQ19_002952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carnitine monooxygenase subunit YeaW"
                     /protein_id="HCS1804499.1"
                     /translation="MSNLSPDFVLPENFCANPQEAWTIPARFYTDQNAFEHEKENVFA
                     KSWICVAHSSELANANDYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSGEGK
                     AKNVITCPYHAWAFKLDGNLAHARNCENVANFDSDKAQLVPVRLEEYAGFVFINMDPN
                     ATSVEDQLPGLGAKVLEACPEVHDLKLAARFTTRTSANWKNIVDNYLECYHCGPAHPG
                     FSDSVQVDRYWHTMHGNWTLQYGFAKPSEQSFKFEEGTDAAFHGFWLWPCTMLNVTPI
                     KGMMTVIYEFPVDSETTLQNYDIYFTNEELTDEQKSLIEWYRDVFRPEDLRLVESVQK
                     GLKSRGYRGQGRIMADSSGSGISEHGIAHFHNLLAQVFKD"
     gene            5354..6319
                     /gene="yeaX"
                     /locus_tag="OQQ19_002953"
     CDS             5354..6319
                     /gene="yeaX"
                     /locus_tag="OQQ19_002953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carnitine monooxygenase subunit YeaX"
                     /protein_id="HCS1804500.1"
                     /translation="MSDYQMFEVQVSQVEPLTEQVKRFTLVATDGKPLPAFTGGSHVI
                     VQMSDGDNQYSNAYSLLSSPHDTSCYQIAVRLEENSRGGSRFLHQQVKVGNRLTISTP
                     NNLFALIPSARKHLFIAGGIGITPFLSHMAELQHSDVDWQLHYCSRNPESCAFRDELV
                     QHPQAEKVHLHHSSTGTRLELARLLADIEPGTHVYTCGPEALNEAVRSEAARLDIAAD
                     TLHFEQFAIEDKTGDAFTLVLARSGKEFVVPEEMTILQVIENNKAAKVECLCREGVCG
                     TCETAILEGEADHRDQYFSDEERASQQSMLICCSRAKGKRLVLDL"
     gene            complement(6373..7488)
                     /gene="rnd"
                     /locus_tag="OQQ19_002954"
     CDS             complement(6373..7488)
                     /gene="rnd"
                     /locus_tag="OQQ19_002954"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310540.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HCS1804501.1"
                     /translation="MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFD
                     GEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQIL
                     SAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITA
                     KLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLAD
                     WRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLTLVE
                     KAQTLPEEALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLL
                     NWHWKLKPQNNLPELISGWRGELMAEALHNLLQEYPQ"
     gene            complement(7569..9254)
                     /gene="fadD"
                     /locus_tag="OQQ19_002955"
     CDS             complement(7569..9254)
                     /gene="fadD"
                     /locus_tag="OQQ19_002955"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase FadD"
                     /protein_id="HCS1804502.1"
                     /translation="MKKVWLNRYPADVPTEINPDRYQSLVDMFEQSVARYADQPAFVN
                     MGEVMTFRKLEERSRAFAAYLQQGVGLKKGDRVALMMPNLLQYPVALFGILRAGMIVV
                     NVNPLYTPRELEHQLNDSGASAVVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLSTAK
                     GTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTT
                     GVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIELG
                     GQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGG
                     MPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLV
                     DDDDNEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRI
                     VDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKAPSL
                     TEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA"
     gene            complement(9459..10040)
                     /gene="yeaY"
                     /locus_tag="OQQ19_002956"
     CDS             complement(9459..10040)
                     /gene="yeaY"
                     /locus_tag="OQQ19_002956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Slp family lipoprotein YeaY"
                     /protein_id="HCS1804503.1"
                     /translation="MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGRSPTPQQDLVRV
                     MSAPQLYVGQEARFGGKVVAVQNQQGKTRLEIATVPLDSGARPTLGEPSRGRIYADVN
                     GFLDPVDFRGQLVTVVGPITGAVDGKIGNTPYKFMVMQVTGYKRWHLTQQVIMPPQPI
                     DPWFYGGRGWPYGYGGWGWYNPGPARVQTVVTE"
     gene            complement(10080..10775)
                     /gene="tsaB"
                     /locus_tag="OQQ19_002957"
     CDS             complement(10080..10775)
                     /gene="tsaB"
                     /locus_tag="OQQ19_002957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HCS1804504.1"
                     /translation="MRILAIDTATEACSVALWNDGTVNAHFELCPREHTQRILPMVQD
                     ILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGA
                     WRKNGATRVLAAIDARMGEVYWAEYQRDENGIWRGEETEAVLKPELVHERMQQLSGEW
                     VTVGTGWQAWPDLGKESGLVLRDGEVLLPATEDMLPIACQIFAEGKTVAVEHAEPVYL
                     RNNVAWKKLPGKE"
     gene            complement(10833..12743)
                     /locus_tag="OQQ19_002958"
     CDS             complement(10833..12743)
                     /locus_tag="OQQ19_002958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HCS1804505.1"
                     /translation="MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVE
                     AGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKG
                     RSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL
                     VTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPE
                     ADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLA
                     QSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDA
                     AFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSW
                     IFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVPRNLPQTNQPGSAR
                     QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV
                     SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD
                     EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA
                     RAVRFLAIPSSR"
     gene            12875..13219
                     /locus_tag="OQQ19_002959"
     CDS             12875..13219
                     /locus_tag="OQQ19_002959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HCS1804506.1"
                     /translation="MTIVRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLA
                     QIDAVLEKQGSNKSSILDATIFLADKNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNP
                     KYKVEIKIVAAV"
BASE COUNT         3199 a         3555 c         3335 g         3278 t
ORIGIN      
        1 accagatagg tccagtaatt cagaaccccg tattcagcga acacattaac ctctttaatt
       61 atctttcgat catgcgcgat taaaggtgaa tatgctaacc aatctgtagc ggcttagaaa
      121 ggagaaaatc aggttttaac ccgatatcaa cccgataatt gaatcattaa tcaggcatgc
      181 tccagtgaaa aattcgggta gtgctcggca aaatactggc gtaaaaattc taccgttatc
      241 cgcactttcg ctgacgtcgc cagccttgaa acataaacgg cccagacgtt cgctggctgg
      301 taatattccg gtagcacttg cactaaatga ccactggcaa tgttttcgct aacatcccac
      361 caggaacgca gagcaatccc ctgcccatcg agacaccact gatggacaat ttctccatga
      421 ttagacgaca gtgggccggt gactttaatc gcatggtggc cttctttatt gcgtaattgc
      481 cagacaccaa aaggatgatc gcgctcttta atgaccaggc acggcaatgc agaaagatcg
      541 gttaaatgtt tcggcgcgcc atgttgcgca ataaattccg gcgacgcgca gagaatgcgg
      601 taattggtcg ccagtttgcg ggcgattaaa ttaggggcga tgtcatcgcc aatgcgaata
      661 tcgagatcga caccttcatt gaccaaatcg accagccggt cttccacatc aaaacgtaat
      721 tccagttgcg gatacgcctt cgccagcgct gataacgccg gagccaccac ctgtcgtcca
      781 aaaccaaagc tgctgataat acgcagcatc ccctgtggca cctgacgcac gtcagaaagt
      841 tcgtccatca tctgaccgac atcctgcaaa atccgctgcg cccattcata aatccgctct
      901 ccttcttcgg taatggtgac gcggcgggtg gtgcggtgta acaacaccac gtttagcgtt
      961 tgctccagca aggcgatgcg cttgctgacg aacgccggtg aaacgcccag ttcttccgcc
     1021 acggcggcaa aaccagcccg acgagccacc agcataaaga cgcgcaaatc attcagcagc
     1081 ggtaaattat tcatgattcg tgttttatgt ttcaccagtt acggggatta attccttttc
     1141 cgtcaattat aggatggtga tgttgtcaat tttgatggtc aggaagtgag aacccaatga
     1201 tgaaaacgat gcgtattgct gcgatcccgg gagacgggat tggtaaagaa gtccttcctg
     1261 aagggattcg cgtgttacag gctgccgctg agcgctgggg cttcgacttg agttttgagc
     1321 aaatggggtg ggcgagctgc gagtattaca gccatcacgg taaaatgatg ccggacgact
     1381 ggcatgagca acttagccgt ttcgacgcca tctattttgg tgccgtcggc tggccggata
     1441 ccgttccgga ccatatttcg ttgtggggtt cgctgctgaa atttcgtcgt gaattcgacc
     1501 agtacatcaa cctgcgcccg gttcgtctct ttcctggcgt tccctgcccg ctggcgggaa
     1561 aacagcctgg cgacatcgat ttttacgtgg tcagggaaaa caccgaaggc gaatattcct
     1621 cgctcggcgg tagagtgaat gaaggtacag agcatgaagt cgtcattcag gaatcggtat
     1681 ttacacgtcg tggtgtcgat cgcattttgc gttatgcctt cgaacttgcg caaagccgcc
     1741 cacgtaagac gctaacttat gccactaaat cgaacggttt agccatcagc atgccgtact
     1801 gggatgagcg agtggaagca atggccgaga attacccgga gatccgctgg gacaagcagc
     1861 atattgatat tctctgcgcg cgttttgtga tgcagccgga acgcttcgat gtggtggtgg
     1921 cgtccaattt gtttggcgat atcctttccg atcttggccc ggcctgcacc ggcaccattg
     1981 gcattgcccc atccgccaac ctgaatccgg aacgcacttt cccgtcgctc ttcgagcctg
     2041 tccacggttc cgcgccggat atctacggga aaaatattgc taaccctatc gccacgattt
     2101 gggccggggc aatgatgctc gattttctcg gcaatggcga tgagcgtttc cagcaagcgc
     2161 ataacggtat tctggcagca attgaagaag tgattgctca cgggccgaaa acacctgata
     2221 tgaaaggcaa tgccaccacg ccacaggttg ccgacgcgat ttgcaaaatt attttgcgtt
     2281 aaggtcaaac cagtttattt gaaccgcgtc actgacgcgg ttttttattc gttctttgca
     2341 gtaaataacc tgcgtcattt caccttttat tgtttccgtt tcgtgtttta tggctttccg
     2401 cattcttaat tgtttaattt atgtaatatt caaataatca atttgttaaa cacaacatac
     2461 aactcattac cctgcaaata attacaactg gcaaaagcca gagacgggct tttatgccca
     2521 ggagatgact catgatgagc aatgttaaga aaaaagatgt gccgctgata agcatcagcc
     2581 tggtggccat tcttttcatc gcagctgcat taagcctttt cccacaacaa tcggccgacg
     2641 cggccaacgc aatatacact tttgttacgc gtacgttagg ttccgccgta caggtattgg
     2701 ttttgctggc aatgggactg gtgatttatt tagccaccag taaatacggc aatattcgtc
     2761 ttggcgaagg aaaaccggaa tacagcacgc tctcctggct gtttatgttt atttgtgccg
     2821 gtttaggttc ttctacgctt tattgggggg ttgctgaatg ggcctattat tatcaaacac
     2881 ctggattaaa tatcgcaccg cgttcacaac aggcactcga atttagcgtt ccctactctt
     2941 tcttccactg gggcatcagc gcctgggcaa cttatacgct ggcctcatta atcatggctt
     3001 atcactttca tgtgcggaaa aacaaaggtc tgagcctttc cggcattatt gctgctatta
     3061 ccggcgttcg cccgcaaggc ccatggggaa aactggttga tttgatgttc ctgatcgcca
     3121 ctgtcggcgc actgactatt tcccttgttg tcaccgcagc aacctttact cgtggacttt
     3181 ccgcactgac aggtttaccc gacaacttca ccgtgcaggc atttgtgatc ctgctttctg
     3241 gcggcatttt ttgcctaagc tcgtggattg gtatcaacaa cggtttgcaa cgtctgagca
     3301 aaatggttgg ctggggcgcg ttcctgctgc cattactggt gctgattgtc ggcccaaccg
     3361 aatttattac caacagcatc atcaatgcca tcggcctgac cacgcaaaac ttcctgcaaa
     3421 tgagcttatt caccgatccg cttggcgatg gttcatttac ccgcaactgg accgttttct
     3481 actggctgtg gtggatctca tacacccctg gcgtagcaat gtttgtcacc cgcgtttccc
     3541 gcggtcgtaa gattaaagaa gttatctggg gactgatcct cggcagcacc gtcggttgct
     3601 ggttcttctt cggcgtaatg gaaagctatg ccattcatca gtttatcaat ggcgtaatca
     3661 acgtcccaca ggtgctggaa acactgggcg gcgaaacagc tgtacagcaa gttctgatgt
     3721 cgttgccagc cggtaaattg ttcctcgccg catacctggg cgtgatgatt attttccttg
     3781 cctcgcatat ggatgcagtg gcctacacca tggcggcgac cagtacgcgt aatctccagg
     3841 aaggtgacga tcctgaccgt gggctgcgtc ttttctggtg cgtggtgatc actctgatcc
     3901 cgctttccat cttgtttacc ggtgcttcgc tggaaacgat gaaaaccacc gtcgtgctca
     3961 cagcccttcc cttcctcgtc attttactgg tgaaagtcgg cggatttatt cgctggctga
     4021 aacaggatta cgccgacatt ccggctcatc aagttgaaca ttatctcccg cagacaccgg
     4081 ttgaagccct ggaaaaaaca ccagtgatcc ctgcgggaac cgtattcaaa ggcgacaact
     4141 gagcgccatc atcctaacga taaaggtatc cctatgagca atctgagccc tgactttgta
     4201 ctacccgaaa atttttgcgc taacccgcaa gaggcgtgga ccattcctgc ccgtttttat
     4261 accgatcaga acgcgtttga acacgaaaaa gagaacgtct tcgccaaaag ctggatttgc
     4321 gtcgctcaca gcagcgaact ggcgaatgcc aatgattatg tgacgcgtga gatcattggc
     4381 gaaagcatcg tgctggtacg cggtcgtgat aaggttttgc gcgcgttcta taacgtgtgt
     4441 ccgcaccgtg gtcatcagtt gttgagcggt gaaggaaaag caaaaaatgt gattacctgc
     4501 ccgtatcacg catgggcatt caaactcgat ggcaatctgg cccatgcacg taactgcgaa
     4561 aacgtcgcca atttcgatag cgacaaagcg caactggttc cggtgcgtct ggaagaatat
     4621 gccggattcg tcttcatcaa catggacccc aacgccacca gcgtagaaga tcagttaccc
     4681 ggtctgggcg cgaaagtgct ggaagcctgc ccggaagtcc acgatctgaa actggcggcc
     4741 cgctttacca cccgcacgtc tgccaactgg aagaacattg tcgataacta tctcgagtgc
     4801 tatcactgtg gtccggcgca tccaggtttc tccgactccg tacaggttga tcgttactgg
     4861 cacaccatgc acggtaactg gacgctgcaa tacggtttcg ccaaaccgtc cgaacagtcg
     4921 tttaaatttg aagagggtac ggatgcggca ttccacggtt tctggctgtg gccgtgcacg
     4981 atgctgaacg tcaccccgat caaagggatg atgacggtca tttatgaatt cccggtggat
     5041 tctgaaacta ccctgcaaaa ctacgatatt tacttcacca atgaagagtt aaccgacgag
     5101 caaaaatcgc tgattgagtg gtatcgcgat gtgttccgtc cggaagattt acgtctggtt
     5161 gaaagcgtac agaaagggct gaaatcgcgt ggctatcgtg gtcaggggcg catcatggcc
     5221 gacagtagcg gtagtggcat ttccgaacat ggtatcgccc atttccataa tctgctggcg
     5281 caggtgttta aggactaatg acatcggcgg cggtattttc cgctgctggg ctgatttttg
     5341 atggagtaca gcaatgtcag actatcaaat gtttgaagta caggtgagcc aggttgaacc
     5401 ccttaccgaa caggtgaaac gcttcacgct ggtggcaacc gatggcaaac cgctgcctgc
     5461 gttcaccgga ggaagtcacg tcattgtgca gatgagcgat ggtgataacc agtacagcaa
     5521 tgcgtattca ctactgagtt cgccgcatga cacctcttgt tatcagattg ccgttcggct
     5581 ggaggaaaac tcgcgcggcg gttcccgctt tttgcatcag caggtaaaag tgggcaatcg
     5641 gttaacgatt tcaacgccta ataacctgtt tgcgctaatt ccctcagcca gaaagcatct
     5701 gtttatcgcg ggcggtattg gtatcacccc tttcctgtcg cacatggcag agctgcaaca
     5761 cagcgacgtc gactggcagc tacattactg ctcgcgaaat ccagaaagtt gcgcatttcg
     5821 tgatgagcta gtccagcatc cgcaggctga gaaagttcac ttgcatcact catcaaccgg
     5881 aacacgactg gaattagcgc gattattggc ggatatcgaa cctggcacac acgtttatac
     5941 ctgtggtccc gaggcgctaa atgaagcggt aagaagtgaa gctgcgcgtc tggacatcgc
     6001 cgccgatacg ctgcactttg agcaatttgc tatcgaagac aaaaccggcg atgcctttac
     6061 cctggtgctt gcccgttccg gaaaagagtt tgtggtgccg gaagagatga ctattttgca
     6121 ggttattgaa aataataaag ccgcgaaagt ggaatgttta tgtcgtgaag gggtatgcgg
     6181 aacctgcgaa acagcaatac tggaaggtga agctgaccat cgggatcagt attttagcga
     6241 tgaagagcgt gccagccagc aaagtatgtt gatctgttgt tcgcgtgcga agggtaaacg
     6301 cctggtgttg gatttgtagt ttgccaaagc cggatgtggc gctgagcgcg cccagtccgg
     6361 cttcggaaga ttttactgcg gatattcctg caataaattg tgtaatgctt ccgccatcag
     6421 ctcaccacgc cagccggaaa tcagctccgg caaattgttc tgcggtttca gtttccagtg
     6481 ccagttcagc agttggttga tttgccgacg cgatgccagc aattcggcgc tgatcttatg
     6541 cgtttcgctc acgtcagtaa tcagcgactt aatcgcttta aacgctttac gataaccagg
     6601 catgtccatc aggttaagca tcggctgcgg taaggcctct tccggcaatg tctgcgcttt
     6661 ttccaccagc gtcagcagcg ttttaccgtg aaagcggatt tcgctaccgg ataaacccag
     6721 gctgtccagt tcgcctaaac ttcccggcat ataacgcgcg accgaccaca aatgctcttc
     6781 acgcacgaca aagttcaccg ccagatcacg ctctcgcgcc ttgcgcagtc gccagtcggc
     6841 taacagttgc agacaggcca gttggcgtgt gcgtaactgc caggcattgg tgatatcacg
     6901 ccaggcatct tccggcgcaa cgacttcctg acgacgcatt tgcatcaggc ggcattcatc
     6961 cagcgccgca ggtagccagc cggaggcctc cgtttctacc ataagcttgg cggtgatcgg
     7021 taacagatac cagacatccg ccgctgcgta ttcacactga cgttcggtca gcggtctggc
     7081 cagccagtcg gtgcgcgatt cactcttgtc cagcgtaacg ccggaatact cttccaccat
     7141 ggaagcgaaa ccccatgaca tcgggcgtcc gcagaaggca gaaaggattt gcgtgtcaat
     7201 caagggttgt ggtaattcgc caaagacatt gaggaacact tccagatctt cactgcctgc
     7261 atggagaaat tttgtgatgg acggatcgcg caggatcgct ttcagcggtg accagtcggt
     7321 gatcccgaga ggatcaatta gcgccagatg ctcgccatcg aaaagttgaa tcaaccccag
     7381 ctgcgggtaa taagtgcgcg tacgaacaaa ttcagtatcc agggctatcg ccggaaaggc
     7441 acggacggct tcacacaaag aagccagcgc atcgtccgtg gtaatcattt ggtaattcaa
     7501 attgttttct ctttagtggg cgtcaaaaaa acgccggatt aaccggcgtc tgacgactga
     7561 cttaacgctc aggctttatt gtccactttg ccgcgcgctt cgtcacgtaa ttctcgtcgc
     7621 aaaatttttc cgacgttaga tttcggtaac tcatcacgaa actccaccag cttcggtact
     7681 ttgtatcccg tgagctgacg gcggcaaaaa gtcaccagtg actcttcggt aagcgatgga
     7741 gcttttttca ctacgaagat tttcaccgct tcaccactgg agccggaagg tacgccaaca
     7801 gccgcgactt cctgtacgcc aggatgctgc atgacgacat cttcaatctc gttgggatag
     7861 acgttaaaac cggaaaccag aatcatgtct tttttacgat cgacaatgcg caggaatcct
     7921 tcttcatcca ttaccgcgat gtcgccggtg tgtaaccagc catttttgat gatttcatcg
     7981 gtagcatcgg gacgctgcca gtaacccagc atcacctgcg gtcctttgac acaaagctca
     8041 cccggttgac ctggtggtac ttcattatca tcatcatcca ccagtttggc ttccgtcgac
     8101 ggcaccggca aaccgatgct accactatga taatcaatat catatgggtt aacgctgacc
     8161 agcggcgcac actcggtaag gccatagcct tccagcagat actgtccggt cagtttcacc
     8221 caacgctctg ccaccacttg ctgcactggc atcccaccgc ctgcggaaag atgcagactg
     8281 gagaaatcca gctgctggaa ctctttattg ttcagcaacg cattgaacaa ggtgttaacg
     8341 ccagtgatag cggtaaacgg atatttcgct aactctttta ccaaccctgg aatatcacgc
     8401 gggttagtga taagcaggtt ctgcccaccc agttcgataa acagcaggca gttaatggtc
     8461 agggcaaaaa tgtgatacag cggcagtgcc gttactacca gttctttacc tggatgcagc
     8521 aacggcccat aggtggcgtt gacctgttcc aggttcgcca gcatattgcg gtgagtcagc
     8581 atcgcgcctt tcgccacacc tgtggtgccg ccggtgtatt gcaggaaggc taaatcttcc
     8641 ggcaccagtt cgggtttgac gtactgcatc cggtagccgt tatgcagtgc gctacgaaat
     8701 gaaatggcat ctggcagatg gtatttcggc accaaacgct tgatgtattt aacaacgaaa
     8761 ttgactaccg tgccttttgc cgtagatagc tgatcgccca tacgggtcag aattacgtgc
     8821 tgaacggcgg ttttatcaac cactttttcc agtgtgtgag caaagttaga cacgataaca
     8881 accgccgatg cgccgctatc gttaagctga tgctcaagct cacgcggggt atacaacggg
     8941 ttaacgttta cgacgatcat cccggcacgc aaaatgccaa acagcgccac cggatattgc
     9001 aataaattag gcatcatcaa cgcaacgcga tcgcctttct tcagccccac cccttgttgc
     9061 aaataagcgg caaacgcgcg actgcgttct tccagcttgc ggaaggtcat cacctccccc
     9121 atattcacaa acgcaggctg atcggcgtag cgcgcgaccg actgctcaaa catatctacc
     9181 agagattgat aacggtcagg gttgatctcc gtcggaacgt ccgcgggata acggttaagc
     9241 caaaccttct tcaattcttc acctctaaaa tgcgtgttcg tcgtcatcgc aaccccaaat
     9301 gatatacata ccgttaacat aatattaact catcatacca gcttgataat tacccaacga
     9361 aaaggttgcg aagcgcgtca ctatttattt ttatctttac cgtaagaatg cagaaacagc
     9421 ggaccagccg ctgtttcttt ttctttaaaa acaagcaatt attcagttac aactgtttgt
     9481 actctcgcgg gaccgggatt ataccagccc catccgccgt agccataggg ccagccacga
     9541 ccgccataaa accatggatc aatcggctga ggcggcataa tcacctgctg ggttaaatgc
     9601 caacgtttgt aacccgttac ttgcatcacc ataaatttat agggcgtatt gccgattttg
     9661 ccgtcaaccg caccagtgat tggcccgact accgtaacca gttgtccacg gaaatccacc
     9721 gggtccagaa aaccgttcac atcggcataa atgcgaccgc gagaaggttc tcccagcgtc
     9781 ggtctggctc cgctgtccag cggtacggta gcaatttcca ggcgggtttt cccttgctgg
     9841 ttttgtaccg caaccacttt gccaccaaag cgtgcctcct gaccaacgta cagctgcggc
     9901 gcactcatca cccgaactaa atcttgttgc ggcgtgggac tgcggccttt aatggcgtcc
     9961 ggcacagtga cacaaccgct cagcattagc gcaaacgtac ctgccagtat gcctttgata
    10021 acattctttt gaaccgccat gatgcgactc ctttttttct cagagcatac tcttaagatt
    10081 cattctttgc ccggaagttt cttccatgcg acgttgttac gtaaataaac cggttcggca
    10141 tgttccaccg ccaccgtttt accctcggca aatatctgac acgcaatcgg cagcatatct
    10201 tccgtcgctg gcagtaaaac ttctccgtcg cgcaaaacca gcccgctctc tttaccgaga
    10261 tccggccagg cttgccagcc cgtccctacc gttacccatt cgccggaaag ctgttgcatt
    10321 cgttcatgaa cgagttcggg tttgagtacg gcttcggttt cttcaccgcg ccagataccg
    10381 ttttcatcac gctgatattc ggcccagtaa acttcgccca tccgcgcatc aatggcagcc
    10441 agcacgcggg ttgcgccgtt tttgcgccac gccccttgcg ccattgtcat tagcgtggag
    10501 acgccaatca tcggcagctc tgcgccaagt gccagccctt gcgcaatgcc aataccaatg
    10561 cgcacgccgg taaagctacc ggggccgcgc ccgtaagcca gagcgttaat atcagtcagg
    10621 gaagttccgc tggtggtcag gatatcctgc accatcggta agattcgttg agtatgttca
    10681 cgagggcaaa gctcaaaatg agcgttgaca gtaccgtcgt tccacagggc gacagagcag
    10741 gcctctgtcg cggtatcgat agccagaatt cgcatgggtc ttcgtgctta gatcaataaa
    10801 aaggcgcgca tcataccata ctccgtaaca aattacctgg aggatggtat cgcaaggaaa
    10861 cgaaccgcac gggcaatgtc acgggtgcgc ggcgcgggcg gcagactggc gagaaacgtc
    10921 gcgccgtaag ggcgcatcac cagccgattg tcacaaatca ccaaaacccc gcgatcgtcg
    10981 gcgtcgcgaa tcagtcgccc taccccctgc ttgagagtaa tcaccgcatc cggcagttgt
    11041 acttcatcga acgggtcgcc accgcgcaaa cggcaatctt ccatgcgcgc ttttaacagc
    11101 gggtcatccg gtgaggtaaa cggcaacttg tcgataatca ccaatgacaa tgtatcgcca
    11161 cgcacgtcca ccccttccca gaaactactg gttgccacaa gaagcgcgtt accggcgctg
    11221 acaaattgct gcaacagttg ccctttgctg gtttccccct gcaacaaaac gggaagcgtc
    11281 atggtagcgc ggaactgctc ggccagatca cgcatcatgg cgtgcgaggt acaaagcata
    11341 aaacaacgac cgttgttagc ttcgatgatc ggtcgcagca ttgccgctaa ctggcgagca
    11401 gaacctggct ggttggtttg cggcagattg cgcggcacac agagtaacgc ctggcggctg
    11461 taatcaaacg ggcttggcaa tagcaacgac tccgcctgtt ctatcccaag ccgcgaggtg
    11521 aaatgatgca gatcgtcgtt caccgacagc gttgctgagg tgaagatcca gctaccaggc
    11581 ttttgcgcca ttaactcttt gaatttatcc gccacgctga gcggcgtgag agccagagta
    11641 aaatggcgcg aagtgcattc gtaccagtag ctgtagcccg gctgattgat ctcttttagc
    11701 cgcttcagcc gtgtgcgata caacgtagcg cgctcaaatg ccgcatccag caaggcggaa
    11761 cgccccagtg acagtttcgc cacgtcataa caaagttcca gggtgtcatc gagcagtaaa
    11821 aatgcccgct gaatttgcgg attagctaac agctcacgca ggttaccgcg ataacctggc
    11881 tcaccgagtt gcagacgaaa atcctgcgca ctctgggcaa gacgatcagc gcacttttgt
    11941 aactgctggg tgtcttttaa ttcggtgcgg taggcgatgg tgatgtcttt tgccaggtcg
    12001 agcagttgtc gactggagag tgactgacca aaatactggc tggcaatgtc cggtagctgg
    12061 tgggcttcgt cgaagatcat gacgtccgct tccgggatca gttcgccaaa tccactctct
    12121 ttaaccacca tatccgccag aaagagatga tggtttacca ccaccacatc ggcgtccatc
    12181 gcttttttac gtgctttgac cacaaagcaa tctttataca tcgggcagtc gctgccaaga
    12241 cagttgtcgt tggtgctggt aaccagcggc cacgcctgtg aatcttccgc cacgctgacg
    12301 caggtgctga tatcaccatc gactgtttga ttagaccagg agcgcagcag gatcacatcg
    12361 cttaagattt gtaccggcag atcgcccccc gccagcgcct gctgttcgag acgttcgagg
    12421 cagaggtagt ttgagcgccc tttcagcagc gccacgttgc ccgtatattt caatgccttt
    12481 gagactgttg gcaaatcgcg gctgtagagc tgatcctgca acgcttttga gccggtcgag
    12541 ataatgactt tctttttcgc ccgcagcgca ggagccaggt aagcgtaggt tttgcccgta
    12601 ccggttcctg cttccaccac cagcggctgg cctttttcta tcgcctgggt gacggctacc
    12661 gccatctgtc gctgtggttc tcgcggctta aagcctggta tcgctttcgc cagctgaccg
    12721 tctggtgcaa aatcgtccgt cacactaccc cctgttgatt tgaacgggga ttatgtcagg
    12781 atgagggcgc tttcgccagt tgaagtggtg acggcaacct cacattgtgg cagtctttgc
    12841 agcacgaaaa tggaagtata atgaggacaa aatgatgact atcgttcgta tcgatgctga
    12901 agcccgctgg tctgatgtag taatccacaa caacacgctc tactacactg gtgtaccgga
    12961 aaacctcgac gccgatgctt ttgagcaaac cgccaacacg ctggcgcaga ttgacgccgt
    13021 gctggaaaaa cagggcagca ataaatcgag cattctggat gccaccattt tcctggctga
    13081 taaaaacgac ttcgcggcga tgaataaagc gtgggatgcc tgggttgtgg cgggtcatgc
    13141 gccggtgcgc tgcacggtgc aagcggggct gatgaacccg aagtataaag ttgaaattaa
    13201 gattgtggct gcggtgtaag ctttatcgaa gcaaaataag tcagacgatc atttatcgat
    13261 aatactggtc ggttttacat aaatcgacca gagattaaga tattactgtt gatgctcctg
    13321 ctaattcatt atttattttt ataatttcaa ttttagctat aaagcta
//
LOCUS       DAJVSY010000115        13312 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.115, whole genome shotgun sequence.
ACCESSION   DAJVSY010000115 DAJVSY010000000
VERSION     DAJVSY010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13312
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.115"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..309
                     /locus_tag="OQQ19_002960"
     CDS             <1..309
                     /locus_tag="OQQ19_002960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HCS1804507.1"
                     /translation="VVLNGKINGNACIVVPLSTTRDHDKLNRGMHVEIASNVINGLQF
                     FDQQIRWAKADLVQQVSRNRLNRARTYRGYLNQCLPHELVADIQRAVIKSINAILLIN
                     "
     gene            508..789
                     /gene="ppiC"
                     /locus_tag="OQQ19_002961"
     CDS             508..789
                     /gene="ppiC"
                     /locus_tag="OQQ19_002961"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004097481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PpiC"
                     /protein_id="HCS1804508.1"
                     /translation="MAKTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSG
                     KRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRN"
     gene            complement(876..2351)
                     /gene="ilvC"
                     /locus_tag="OQQ19_002962"
     CDS             complement(876..2351)
                     /gene="ilvC"
                     /locus_tag="OQQ19_002962"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HCS1804509.1"
                     /translation="MANYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVG
                     CGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLV
                     VNLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTE
                     VREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDL
                     MGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEKLIQFGWETITEALKQGGITLMMDR
                     LSNPAKLRAYALSEQLKEIMAPLFQKHMDDIISGEFSSGMMADWANDDKKLLTWREET
                     GKTAFETAPQYEGKIGEQEYFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLH
                     ELPLIANTIARKRLYEMNVVISDTAEYGNYLFSYACVPLLKPFMAELQPGDLGKAIPE
                     GAVDNAQLRDVNEAIRCHAIEQVGKKLRGYMTDMKRIAVAG"
     gene            2501..3391
                     /gene="ilvY"
                     /locus_tag="OQQ19_002963"
     CDS             2501..3391
                     /gene="ilvY"
                     /locus_tag="OQQ19_002963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator IlvY"
                     /protein_id="HCS1804510.1"
                     /translation="MDLRDLKTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLG
                     QPLFVRDNRTVTLTEAGEELRVFAQQTLLQYQQLRHTIDQQGPSLSGELHIFCSVTAA
                     YSHLPPILDRFRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGKPETLPGAVAFSM
                     LENLAVVLIAPALPCPVRNQVSSEKPDWSTVPFIMADQGPVRRRIELWFRRNKISNPM
                     IYATVGGHEAMVSMVALGCGVALLPEVVLENSPEPVRNRVMILERSDEKTPFELGVCA
                     QKKRLHEPLIEAFWKILPNH"
     gene            complement(3388..4932)
                     /gene="ilvA"
                     /locus_tag="OQQ19_002964"
     CDS             complement(3388..4932)
                     /gene="ilvA"
                     /locus_tag="OQQ19_002964"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HCS1804511.1"
                     /translation="MADSQPLSGAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRL
                     DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLG
                     VKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPPFDHP
                     MVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA
                     CLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKD
                     LFEDVRAVAEPSGALALAGMKKYIAQHNIRGERLAHILSGANVNFHGLRYVSERCELG
                     EQREALLAVTIPEEKGSFLKFCQLLGGRAVTEFNYRFADAKNACIFVGVRLSRGLEER
                     KEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRF
                     LNTLGTHWNISLFHYRSHGTDYGRVLAAFELGDHEPDFETRLNELGYDCHDETNNPAF
                     RFFLAG"
     gene            complement(4935..6785)
                     /gene="ilvD"
                     /locus_tag="OQQ19_002965"
     CDS             complement(4935..6785)
                     /gene="ilvD"
                     /locus_tag="OQQ19_002965"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HCS1804512.1"
                     /translation="MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFT
                     QFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIAD
                     SVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQII
                     KLDLVDAMIQGADPKVSDSQSDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGN
                     GSLLATHADRKQLFLNAGKRIVELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMG
                     GSTNTVLHLLAAAQEAEIDFTMSDIDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIG
                     ILGELDRAGLLNRDVKNVLGLTLPQTLEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFS
                     QDCRWDTLDDDRANGCIRSLEHAYSKDGGLAVLYGNFAENGCIVKTAGVDDSILKFTG
                     PAKVYESQDDAVEAILGGKVVAGDVVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKAC
                     ALITDGRFSGGTSGLSIGHVSPEAASGGSIGLIEDGDLIAIDIPNRGIQLQVSDAELA
                     ARREAQEARGDKAWTPKNRERQVSFALRAYASLATSADKGAVRDKSKLGG"
     gene            complement(6850..7779)
                     /gene="ilvE"
                     /locus_tag="OQQ19_002966"
     CDS             complement(6850..7779)
                     /gene="ilvE"
                     /locus_tag="OQQ19_002966"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HCS1804513.1"
                     /translation="MTTKKADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYD
                     SHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLIF
                     VGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAK
                     AGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSAL
                     PGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGEG
                     RCGPVTKRIQQAFFGLFTGETEDKWGWLDQVNQ"
     gene            complement(7799..8062)
                     /gene="ilvM"
                     /locus_tag="OQQ19_002967"
     CDS             complement(7799..8062)
                     /gene="ilvM"
                     /locus_tag="OQQ19_002967"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 small subunit"
                     /protein_id="HCS1804514.1"
                     /translation="MMQYQVNVSARFNPETLERVLRVVRHRGFHVCSMNMAAASDAQN
                     INIELTVASPRSVDLLFSQLNKLVDVAHVAICQSTTTSQQIRA"
     gene            complement(8059..9705)
                     /locus_tag="OQQ19_002968"
     CDS             complement(8059..9705)
                     /locus_tag="OQQ19_002968"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001012636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 catalytic subunit"
                     /protein_id="HCS1804515.1"
                     /translation="MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYDGGVEHLLC
                     RHEQGAAMAAIGYARATGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAP
                     FIGTDAFQEVDVLGLSLACTKHSFLVQSLEELPRIMAEAFDVASSGRPGPVLVDIPKD
                     IQLASGDLEPWFTTVENEVTFPHAEVEQARQMLAKAQKPMLYVGGGVGMAQAVPALRE
                     FLATTKMPATCTLKGLGAVEADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDR
                     VTGKLNTFAPHASVIHMDIDPAEMNKLRQAHVALQGDLNALLPELQQPLNINDWQQYC
                     AQLRDEHAWRYDHPGDAIYAPLLLKQLSDRKPADCVVTTDVGQHQMWAAQHIAHTRPE
                     NFITSSGLGTMGFGLPAAVGAQVARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKI
                     VLLDNQRLGMVRQWQQLFFQERYSETTLTDNPDFLMLASAFGIPGQHITRKDQVEAAL
                     DTMLNSDGPYLLHVSIDELENVWPLVPPGASNSEMLEKLS"
     gene            complement(9708..9758)
                     /locus_tag="OQQ19_002969"
     CDS             complement(9708..9758)
                     /locus_tag="OQQ19_002969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804516.1"
                     /translation="MNNSTKFCFSTFSTGN"
     gene            complement(9845..9943)
                     /gene="ilvL"
                     /locus_tag="OQQ19_002970"
     CDS             complement(9845..9943)
                     /gene="ilvL"
                     /locus_tag="OQQ19_002970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ilv operon leader peptide"
                     /protein_id="HCS1804517.1"
                     /translation="MTALLRVISLVVISVVVIIIPPCGAALGRGKA"
     gene            10295..11815
                     /locus_tag="OQQ19_002971"
                     /pseudo
     CDS             10295..11815
                     /locus_tag="OQQ19_002971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418214.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
     gene            complement(11839..12177)
                     /gene="maoP"
                     /locus_tag="OQQ19_002972"
     CDS             complement(11839..12177)
                     /gene="maoP"
                     /locus_tag="OQQ19_002972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ori organization protein MaoP"
                     /protein_id="HCS1804518.1"
                     /translation="MAESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGYAFNE
                     LDLGKREPVTEEEKLFVAVCRGEREPVTEAERVWSKYMTRIKRPKRFHTLSGGKPQVE
                     GAEDYTDSDD"
     gene            12296..13135
                     /gene="hdfR"
                     /locus_tag="OQQ19_002973"
     CDS             12296..13135
                     /gene="hdfR"
                     /locus_tag="OQQ19_002973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator HdfR"
                     /protein_id="HCS1804519.1"
                     /translation="MDTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLG
                     VNLFTRHRNNIRLTAAGEKLLPYAETLMSTWQAARKEVAHTSRHNEFSIGASASLWEC
                     MLNQWLGRLYQNQDAHTGLQFEARIAQRQSLVKQLHERQLDLLITTEAPKMDEFSSQL
                     LGYFTLALYTSAPSKLKGDLNYLRLEWGPDFQQHEAGLIGADEVPILTTSSAELAQQQ
                     IAMLNGCTWLPVSWARKKGGLHTVVDSTTLSRPLYAIWLQNSDKNALIRDLLKINVLD
                     EVY"
     gene            complement(13231..13306)
                     /locus_tag="OQQ19_002974"
     tRNA            complement(13231..13306)
                     /locus_tag="OQQ19_002974"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13271..13273),aa:Trp,seq:cca)
BASE COUNT         3089 a         3600 c         3450 g         3173 t
ORIGIN      
        1 gtcgtgctca acggaaaaat taatggcaac gcatgtatcg tcgttccatt atcaaccact
       61 cgcgatcatg acaagttaaa tcgtggaatg catgttgaaa tagccagtaa tgttatcaat
      121 ggcctgcaat tctttgatca gcagattcgt tgggccaaag ccgacctggt acaacaagtc
      181 agtcgaaacc gattaaatag agcaaggact tacagagggt atcttaatca atgtttgcca
      241 catgagttgg ttgcagacat acagagggcg gtcatcaagt caatcaatgc catattgctc
      301 ataaattgac aataaaataa ccatccccga taatgacttt gtagcccata gaggccctaa
      361 gttttctccc cttgagggac ctgcgaagcc cggattttcc gggcttttgc catatatgta
      421 ccagcccctc cctgactgac aattacgtta gcatctgcgg atcatgctaa aatcgccgcc
      481 tgacaattat tcactcaagg cacgatcatg gcaaaaacag cagcagcact gcatatcctt
      541 gtaaaagaag agaaactggc tctggatctt ctcgagcaga ttaagaacgg tgccgatttc
      601 ggcaagctgg cgaagaaaca ctccatttgc ccatcaggca aacgcggcgg tgatttaggt
      661 gaattccgcc agggtcagat ggttccggcg ttcgataaag ttgtgttctc ttgtccggta
      721 ctggagccga ccggcccgct gcacacccag ttcggttacc acatcattaa ggtgctgtac
      781 cgtaactaat agcaaggcct tctccaggag aaggccttga gtgttttctc cctctccctg
      841 tgggagaggg tcggggtgag ggcatcagcg cgcacttaac ccgcaactgc aatacgtttc
      901 atatccgtca tatagccgcg cagtttctta cctacctgct caatcgcatg gcagcgaatc
      961 gcttcgttca catcacgcag ttgcgcgtta tctaccgcac cttccggaat agctttaccc
     1021 agatcgcccg gttgcagctc tgccataaac ggtttcagca acggcacaca agcgtaagag
     1081 aacagatagt taccgtactc agcggtatca gagataacca cgttcatttc gtacagacgc
     1141 ttacgggcga tggtgttggc aatcagcggc agctcgtgca gtgattcata atatgcagac
     1201 tcttcaatga tgccggaatc gaccatggtt tcaaacgcca gctcaacgcc cgctttcacc
     1261 atcgcgatca tcagtacgcc tttatcgaag tactcctgct cgccgatttt gccttcatac
     1321 tgcggcgcgg tttcgaaggc ggttttgccg gtctcttcac gccaggtcag cagtttctta
     1381 tcatcgttgg cccagtccgc catcataccg gaggagaatt cgccggagat gatgtcgtcc
     1441 atatgtttct ggaacagggg tgccatgatc tctttcagct gttcagacag cgcgtaagca
     1501 cgcagtttcg ccgggttaga gagacggtcc atcatcaggg tgatgccgcc ctgcttcagc
     1561 gcttcggtga tggtttccca accgaactga attagttttt ctgcgtatgc cggatcggtg
     1621 ccctcttcca ccagcttgtc gaagcacagc agcgagccag cctgcaacat accgcacagg
     1681 atggtttgct cacccatcag gtcagatttc acttccgcaa cgaaggacga ttccagcacg
     1741 cccgcacggt gaccaccggt tgctgccgcc catgctttag cgatcgccat gccttcgcct
     1801 ttcggatcgt tttccgggtg aacggcaatc agcgtcggta cgccgaatcc acgtttgtac
     1861 tcttcacgca cttcggtgcc agggcatttc ggcgcaacca tgactacggt gatgtcttta
     1921 cggatctgct cgcccacttc gacgatgttg aaaccgtgcg agtaacccag cgccgcgccg
     1981 tctttcatca gtggctgtac ggtgcgcact acgtcggagt gctgcttgtc tggcgtcagg
     2041 ttaaccacca aatccgcctg cgggatcagt tcttcgtaag tgcccacttt aaaaccgttt
     2101 tcggtcgctt tacgccagga tgcgcgcttc tcggcaatcg cttctttacg cagagcgtag
     2161 gagatatcga gaccagaatc acgcatgttc aggccctggt tcagcccctg tgcgccacag
     2221 ccgacgataa ccactttttt accctgaagg tagctcgcgc cgtcggcgaa ttcgtcgcgc
     2281 cccataaagc gacatttgcc cagctgtgcc agctgctggc gcaggttcag tgtattgaag
     2341 tagttagcca tggtgattcc tcgtgatgtt gtgcttctta ttgttcggtt cgcgtttgcg
     2401 agattgaatt cactatatga caggaaattt attgcggaaa ttgatatatt cacaacgtca
     2461 cattgcaatt tctgcaacgt caacattgag ggctgctcca ttggatttac gcgatctgaa
     2521 aaccttcctg catctggcgg aaagccgcca ttttggccgc agcgcgcggg cgatgcacgt
     2581 tagcccatcc acgctctcac ggcagattca gcgcctggaa gaagatcttg gtcagccgct
     2641 atttgtgcgc gataaccgca cggtgacgct gactgaagcg ggcgaagagc tgcgcgtttt
     2701 cgcccagcaa acgctgttgc agtatcagca gttgcgccac accatcgatc agcaagggcc
     2761 gtcgctctct ggcgaattac atatcttctg ctcggtgacc gctgcctaca gccatctgcc
     2821 accgattctc gaccgcttcc gcgcggaaca cccgtcggtg gagatcaaac taaccactgg
     2881 tgatgcggca gatgcgatgg aaaaggtagt cactggcgaa gcggatctgg cgattgccgg
     2941 gaaaccggag actctgcccg gcgcagtggc gttttcgatg ctggagaatc tggcagtagt
     3001 gctgattgcg cccgcgctgc cctgcccggt gcgtaaccag gtttcgtcag agaagccgga
     3061 ctggtctaca gtgccgttta tcatggccga tcagggaccg gtacgccgcc gcattgaact
     3121 gtggtttcga cgcaataaaa tcagcaaccc gatgatttac gccacggttg gcgggcatga
     3181 agcgatggta tcgatggtgg cgctcggctg tggcgtggcg ctgttgccgg aagtagtgct
     3241 ggaaaacagc cccgaaccgg tgcgtaaccg cgtgatgatt ttagagcgca gcgatgaaaa
     3301 aacgccgttt gaactgggcg tttgtgcgca gaaaaagcgg ctgcatgagc cgctgattga
     3361 ggcgttctgg aagattttgc cgaaccatta acccgccaaa aagaacctga acgccggatt
     3421 attggtttcg tcgtggcaat cgtagcccag ctcatttagc cgggtttcga aatccggttc
     3481 atggtcgccg agttcgaacg ccgccagtac gcgcccgtag tcggtgccat ggctgcgata
     3541 gtggaacaaa gaaatgttcc agtgcgtacc cagcgtgttg aggaagcgca gcagcgcgcc
     3601 cggtgattcc gggaattcga agctgtagag gcgttcctgc aacggatgtg acggacgccc
     3661 gccgaccata tagcgcacat gcaacttcgc catttcgtcg tcggagagat ccaccacgct
     3721 gtagccgccg tcgttgagca tctgcaaaat ttctttgcgc tcttcgaggc cgcggctcag
     3781 gcgcacgccg acaaagatgc aggcgttttt ggcatcggca aaacggtagt tgaactcggt
     3841 gaccgctcgc ccgccaagca gttggcagaa tttgaggaag ctgccttttt cttccggaat
     3901 ggtcaccgcc aacaacgctt cacgctgttc gcccagttcg cagcgttccg agacgtagcg
     3961 caggccgtgg aagttcacgt tggcaccgga aagaatatgc gccagccgtt cgccgcgaat
     4021 gttgtgctgg gcgatatatt ttttcattcc cgccagcgcc agcgcgccag agggttccgc
     4081 caccgcgcgc acatcttcga ataaatcctt catcgccgca cagatcgcat cactatcgac
     4141 ggtgatgatg tcgtcgagat actcctggca taaacggaag gtttcgtcac cgatgcgttt
     4201 taccgctacg ccttcagcaa atagccctac gcgcggcaga tcaaccggat gacccgcatc
     4261 cagcgctgct ttcaggcagg cggagtcttc cgcttctacg gcgatcactt tgatttgtgg
     4321 catcagttgt ttgatcagca ccgcaacgcc cgccgccaga ccgccgccgc cgactggcac
     4381 aaatacgcgg tcgagatggg cgtcctgctg gagcagttcc agcgccagcg tgccttgccc
     4441 ggcaatcacc atcggatggt cgaacggcgg cacccaggtg aacccctgct gctgtgacag
     4501 ttcgatcgct ttagctttcg cttcgtcaaa gttcgcgcca tgaagcagca cttcgccgcc
     4561 gaatccacgt accgcatcga ctttgatgtc ggcggtggcg gttggcataa cgatcagggc
     4621 cttcacgcct aaccgcgcag aagaaaacgc gacgccctgc gcgtggttac ccgcagaagc
     4681 agtgatcacg ccgtgcgctt tttgttcttc cgtcaggccc gccatcatgg cgtatgcgcc
     4741 gcgcagctta aagctgtgca ctggctggcg atcttcgcgc ttcaccagaa tgacgttatc
     4801 aagacgcgac gacagttttt ccattttttg tagcggcgta acctgcgctg cctcgtaaac
     4861 cggcgcgcgc agcactgctc ttaaatattc ggcaccttcc ggagcaccag acaggggttg
     4921 cgagtcagcc attattaacc ccccagtttc gatttatcgc gcaccgcacc tttgtcggcg
     4981 ctggttgcca ggctggcgta ggcgcgcagg gcaaaggaaa cctgacgttc acggtttttc
     5041 ggcgtccagg ctttgtcacc ccgagcttcc tgcgcttcac gacgcgccgc cagttcggca
     5101 tcgcttacct gtaactgaat gccacggttc gggatgtcga tagcgatcag gtcaccatct
     5161 tcaatcagac caatgctgcc gccgcttgcc gcttccggtg agacgtggcc gatggaaaga
     5221 ccagaggtgc cgccagagaa acgaccgtcg gtgatcagcg cacaggcttt accgagaccc
     5281 attgatttca ggaagctggt tgggtagagc atttcctgca tgccagggcc gcctttcggg
     5341 ccttcatagc ggatcaccac cacatcgccc gcgacaactt tgccaccgag gatcgcttct
     5401 accgcgtcgt cctggctttc gtacactttt gccgggccgg tgaatttgag gatgctgtca
     5461 tcgacgcccg cggttttcac gatgcagccg ttttcagcaa aattaccgta gagcaccgcc
     5521 aggccgccgt ctttgctgta ggcgtgttcc agcgagcgga tacagccgtt tgcgcgatcg
     5581 tcgtccagcg tatcccaacg gcaatcttgc gagaatgcct gggtggtacg gatacccgca
     5641 gggccggcgc ggaacatatt ttttaccgcg tcatcctggg tcagcataac gtcgtattgc
     5701 tccagcgttt gcggcaacgt caggccgagc acgtttttca catcacggtt cagtaacccc
     5761 gcgcgatcca gttcgccgag aataccgata acaccaccag cacggtgaac atcttccata
     5821 tggtatttct gggtgctcgg cgcaacttta cacagctgtg gaaccttgcg ggaaagctta
     5881 tcgatatcac tcatggtgaa gtcgatttcc gcttcctgcg ccgccgccag caggtgaagt
     5941 acggtgttag tcgatccacc catcgcgata tccagcgtca tggcgttttc aaacgccgcc
     6001 ttactggcga tattacgcgg cagtgcactt tcgtcgtttt gctcgtaata acgtttggtc
     6061 aattcaacaa tgcgtttacc agcattaagg aacagctgct tacggtccgc gtgggttgcc
     6121 agcagcgagc cgttgcctgg ctgcgacaaa cccagcgctt cggtcaggca gttcattgag
     6181 ttagcggtaa acatcccgga gcaggaaccg caggttgggc aggcggaacg ttcaacctga
     6241 tcgctctggg agtcagaaac tttcgggtct gcgccctgga tcatcgcatc aaccagatcg
     6301 agtttgatta tctgatcgga cagtttggtt ttcccggcct ccatcgggcc gccggaaaca
     6361 aagatcaccg gaatattcag gcgcagggaa gccatcagca tccccggggt gattttgtcg
     6421 cagttagaga tgcagaccat ggcgtcggcg cagtgggcgt tgaccatata ctcaacggaa
     6481 tcagcgatca gttcgcgaga tggaagtgaa taaagcatcc ccccgtggcc catggcaatc
     6541 ccatcatcca ccgcaatggt gttgaactct ttggcaacgc cgccagccgc ttcaatttgt
     6601 tcggcgacca gtttaccgag atcgcgcaga tggacgtgac ccggtacaaa ttgggtgaac
     6661 gagttcacaa ccgcgataat cggcttgcca aaatcggcgt cggtcattcc ggtggcgcgc
     6721 cacagcgcac gagcacccgc catattacga ccatgagtgg tggtggcgga acggtactta
     6781 ggcatacttt atttactccc agtgtctgtc tcgtaaatgg gacggtgcgt gccgtcccat
     6841 tttttgtatt tattgattaa cttgatctaa ccagccccat ttatcttcgg tttcgccagt
     6901 gaagaggccg aagaaggctt gctgaatgcg tttggtaacc gggccacaac ggccttcgcc
     6961 aacctgaata ccgtctacgc tgcgcactgg cgtgatttct gccgcagtac cggacataaa
     7021 cacttcatcc gccaggtaca gggattcgcg cgacagcacc tgctcacgca cttcaattcc
     7081 cagctctttc gccagtttga tgatggcatc acgggtaata cccggcagcg cggatgaggt
     7141 aaacggtggg gtgaacagca cgccgtcttt cacttcaaac aggttttcac ctgcgccttc
     7201 agagatgtaa ccgttcacat ccagcgcgat accttcctga taaccgtggc ggcgcgcttc
     7261 gctacccacc agcagggaag agaggtagtt accaccggct tttgccgccg tcgggatggt
     7321 gtttggtgct gcgcggttcc aggaggaaac catcgcatcg atcccctgct ccagcgcttc
     7381 tgcgcccaga tacgctcccc acgggaaagc agcgataatc acgtcggttg agtatcccgc
     7441 tggcgggttt actcccatgc caacatcacc gacgaagatc agcggacgga tataggcgct
     7501 ggtgagatta tttttgcgga tcacgtcacg acaagcttcc atcagctcat caatgctctg
     7561 cgaaaccggg aagcgataga ttttggcgga gtcatgcaga cgctgcatat gctcacgatg
     7621 gcggaataca accggtcctt tgtgcgagtc gtagcaacgg atgccttcaa aaaccgaagt
     7681 gccatagtgc agcgcgtgcg acatcacatg caccttcgcg tcttcccagc gaaccatctc
     7741 cccattgaac caaatgtaat cagctttctt cgtggtcatt tttatattcc ttttgcgctc
     7801 aggcgcggat ttgttgtgat gtggttgtgc tctggcagat ggcaacgtgt gcgacgtcca
     7861 ccagtttatt taactgacta aacagtaagt cgaccgaccg tgggctggca acggtcaatt
     7921 cgatatttat attttgtgca tcgctggcgg cggccatatt cattgagcag acgtggaaac
     7981 cacgatgacg caccacgcgt aaaacacgtt ctaaggtttc cggattgaag cgagccgata
     8041 cattgacctg atattgcatc atgataattt ctccaacatt tctgaattac tggcgccagg
     8101 cggcaccagc ggccagacgt tctcaagttc gtcgattgag acatgaagca ggtatggccc
     8161 atcactgttc agcatggtgt cgagtgccgc ttcaacctgg tctttacggg tgatgtgttg
     8221 gccagggatg ccgaaggcgc tggctaacat gaggaaatcg gggttatcag taagggtggt
     8281 ttcgctgtat cgttcctgaa aaaacagttg ctgccattgt cgaaccatcc ctaaccgttg
     8341 gttatcgagt aagacgattt tcaacggtaa ctgcttgcgt tttacggtgc ccagctcttg
     8401 cacattcatc atgaaagagc cgtcaccgga gatacagacg acggtatcgt tcggtcgcgc
     8461 gacttgtgcg ccaaccgccg ctggtaaacc aaaacccata gtgcctaagc cgctggaggt
     8521 gatgaaattt tccgggcgag tgtgggcgat gtgttgcgca gcccacatct ggtgctgccc
     8581 cacatctgtg gtcacgacgc aatccgcagg tttacgatcc gacagttgtt ttaacaacaa
     8641 cggcgcgtag atagcgtcgc cgggatggtc gtaacgccag gcatgttcat cacgcagctg
     8701 cgcgcagtat tgctgccagt cattgatatt taacggctgc tgtaattctg gtaacagagc
     8761 atttaaatca ccttgtaatg ccacatgtgc ctgacgcagc ttgttcattt ctgccgggtc
     8821 gatatccata tggataacgc tggcgtgtgg tgcgaaggtg ttcagtttgc cggtcacccg
     8881 gtcatcaaaa cgtgcaccca cggcgatcag caagtcgcac tcctgcaccg cgaagttcgc
     8941 cgctttggtg ccatgcattc ccagcatgcc cagatagtac ggataatctg cttcaactgc
     9001 gcccagccct ttcagcgtgc aggtggcagg catttttgtg gtagcgagaa attctcgtaa
     9061 agcaggaact gcctgcgcca tacccacgcc accaccaacg tacagcatcg gtttttgcgc
     9121 ttttgccagc atctggcgcg cttgctcaac ttcggcatgt gggaaagtca cttcgttttc
     9181 aacggtggtg aaccacggtt ccaggtcacc gctggctagc tggatatctt ttgggatatc
     9241 gaccagaacc ggaccaggac gacctgagct ggcaacgtcg aatgcttcag ccataatgcg
     9301 cggcaactct tccagcgact gcaccagaaa gctgtgcttg gtacaggcta acgacaatcc
     9361 caggacatcc acttcctgaa atgcatcagt gccgataaac ggtgcggaca cttgaccggt
     9421 gatggcaaca acagggatag aatctaacag tgcgtccgca agcccggtta tcaggttggt
     9481 tgcgcccgga ccagacgtgg cgatacatac gccagttttg ccggtagcac gggcataacc
     9541 gatagccgcc attgccgcac cctgctcatg tcggcacagc aagtgctcca cgccgccgtc
     9601 atacaatgca tcgtaaaccg gcataattgc gccacccgga taaccgaaaa cggtgttcac
     9661 accctgtgcc cgcaacgcat gtaccaccca ctgtgcgcca ttcatagtta gttccccgtg
     9721 ctgaatgttg agaaacagaa ttttgtgctg ttattcattg tctgctcctc ggttatgttt
     9781 ttaaggtcaa aaaaaacccc cggacctttc ggtgcggggg tcttagttcg ttaaggcttg
     9841 atttctaagc ctttcctcgt ccaagtgcag ccccgcacgg tgggataata atcaccacca
     9901 cgctaatcac gaccaggcta atcactcgta gaagggctgt cattttgtct tttcttgcat
     9961 cttgttcgaa ggaatgccta aagagttacc ataggttttg taaatagtac aagatatttt
    10021 ttggccgatt tttatgatgc gtttaataat ttcaatataa gttgttgttt tttaaaaata
    10081 aaatagtgag taaaaaaatt caatttcagt atgaatgttg ttcccttcct cgtagttcat
    10141 cctttgtccg ctgcattttt gcgagcatca ttccaccgcc agaacaactc aacttcactt
    10201 gcacaaataa acaggaatca gccactaaaa ttcacgaatt agcgggctac agcagcgata
    10261 tcttatgcac ataatggtga ctcaaggagg gcttatgtca ctgtcaattg ttcatacccg
    10321 cgcagccctg ggagtaaatg cgcccccgat cactgttgag gtacatatca gtaaaggtct
    10381 acccggctta acgaaggtgg gcttaccaga aacaacggta aaagaagctc gcgatcgcgt
    10441 gcgcagcgcc attatcaata gcggatatga atatccggcg aaaaaaatca ccatcaacct
    10501 ggctccagct gatctgccaa aagaaggggg acgatatgat ttacctatcg ccattgcgtt
    10561 gctggcggcc tcagaacagc ttacagccaa taagttagat gaatatggat tagtcggaga
    10621 actggcgctt acaggcgctc tgcgtggcgt tcccggcgca atctccagta caactgaagc
    10681 tattaagtcg ggcagaaaaa ttatcgtcgc gaaagataac gaagatgaag tggggctaat
    10741 taacggtgaa ggatgcctga tagccgatca tctgcaagct gtctgtgcgt ttctggaagg
    10801 taagcacgct ctcgaacgcc cgaaaccaac tgatgcagta tcccgggcgc tacaacatga
    10861 tctcagtgat gttatcggtc aggaacaagg aaagcgagga ctggaaatta ccgccgctgg
    10921 cgggcacaac cttttactga ttgggccgcc gggaacaggt aaaacaatgc tcgccagccg
    10981 tattaatggc ctgttgccag atttaagcaa tgaagaggca ctggagagtg ctgcgatatt
    11041 aagtctggta aatgctgaat cagtacaaaa acaatggcgg cagcgcccgt tccgctcacc
    11101 tcatcacagt gcatcgttaa ctgcgatggt aggcggtggc gcaattccag ggcccggtga
    11161 aatttcgctg gcgcataacg gcgtgctttt tcttgatgag ttacctgaat ttgaaaggcg
    11221 tacactggat gccttgcgag agccgattga atccgggcag atccatcttt cacgcacgcg
    11281 agcaaaaata acctatccag cccgtttcca gcttgtcgcg gcgatgaatc ccagccctac
    11341 cggacattat cagggaaacc ataaccgctg cacaccagag caaacgctgc gttatctcaa
    11401 ccgactctct ggtccctttc tcgaccgctt cgatctctca ctggagatcc cattaccgcc
    11461 tcccggtatt ttgagtaaaa cggtagtgcc gggagaaagc agcgccaccg ttaaacaacg
    11521 cgtaatggcc gccagagagc gccaatttaa gcggcagaat aaactgaacg cctggctgga
    11581 tagtccggaa atacgccaat tctgcaaact tgagagcgaa gatgcgatgt ggctggaaga
    11641 aacgctgatc catctggggt tatcgattcg tgcctagcag cggttattga aagttgcacg
    11701 aaccattgct gatattgatc agtctgacat tatcacacgt caacatttgc aggaggcagt
    11761 tagctatcga gcgattgacc gtttgctcat ccatctgcag aaactactga cataaaaaag
    11821 ggcatttcgc cctttttatt aatcgtcaga atcggtgtag tcttcagcac cttcaacctg
    11881 cggtttaccg ccggaaaggg tgtgaaaacg ttttggacgc ttaatacgcg tcatatactt
    11941 ggaccacacg cgttctgctt ctgtcactgg ctcacgttcg ccacggcata ctgctacgaa
    12001 gagtttctct tcctcggtaa ccggctcgcg tttgccaaga tccaactcat tgaaggcata
    12061 accatgacgc tcaagcagtt gtgcctcttt gatggtgaaa tcaccatgac gagagaatcc
    12121 acgtggataa tgtttattgt cgaaatatcg attagtcgtc gtaaagcttt ccgccatcct
    12181 gcacgctcct aattctttga ccgagctagt tatggcgcgg agtattagtt acgcttgaca
    12241 gagtgtaaaa caaaacattt aaatcataac gacaaataat tttgcggaga gcactgtgga
    12301 tacggaattg ttaaaaactt tcctggaagt tagccgaacg cgtcactttg gtcgagcggc
    12361 tgaatcgctc tatctgaccc agtcagcagt gagctttcga atcagacaac tggaaaatca
    12421 actgggtgtg aaccttttca cccgccacag aaacaatatc cgtttaaccg ctgccggtga
    12481 aaaactactg ccttatgcag aaacgctcat gagcacctgg caggccgccc gcaaggaggt
    12541 ggcgcatacc tcacgacata acgagttttc tatcggtgcc agcgcctcat tgtgggaatg
    12601 tatgcttaat cagtggctgg gacgtttgta tcaaaatcag gatgcccata caggcttaca
    12661 gttcgaagcg cgaattgccc aacggcagtc tctggtaaaa cagctgcatg aacgccagct
    12721 tgatcttctt attaccactg aagcgcccaa aatggacgaa tttagtagtc agttgctggg
    12781 atatttcact ttagcgcttt ataccagtgc cccttcaaaa ctaaagggag atcttaatta
    12841 tctgcgactt gagtgggggc cagattttca acagcatgag gcaggtttga tcggtgctga
    12901 cgaagtgccc attctgacaa ccagttctgc tgaactggca cagcaacaga ttgcgatgct
    12961 taatggttgc acctggctac ccgtcagctg ggcgcgtaaa aaaggcggcc tgcataccgt
    13021 tgtcgatagc acaacacttt cacggccgct ttatgccata tggctgcaaa atagcgataa
    13081 aaatgcgttg attcgcgatc ttttgaaaat taacgtgctg gatgaagtgt attaatatga
    13141 atggctggca aggatgccgg tagaaggatt tacttcggag agggttattt cagataaaaa
    13201 aaatccttag ctttcgctaa ggatgatttc tggcaggggc ggagagactc gaactcccaa
    13261 cacccggttt tggagaccgg tgctctacca attgaactac gcccctaatt ag
//
LOCUS       DAJVSY010000116        13098 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.116, whole genome shotgun sequence.
ACCESSION   DAJVSY010000116 DAJVSY010000000
VERSION     DAJVSY010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13098)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13098)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13098
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.116"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            177..1151
                     /gene="cysB"
                     /locus_tag="OQQ19_002975"
     CDS             177..1151
                     /gene="cysB"
                     /locus_tag="OQQ19_002975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012017585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CysB"
                     /protein_id="HCS1804520.1"
                     /translation="MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDEL
                     GIQIFSRSGKHLTQVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHT
                     QARYALPNVIKGFIERYPRVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVM
                     LPCYHWNRAIVVTPDHPLAGKKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTP
                     RIVFTATDADVIKTYVRLGLGVGVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRR
                     STFLRSYMYDFIQRFAPHLTRDVVDAAVALRSNEEIEVMFKDIKLPEK"
     gene            1446..1610
                     /locus_tag="OQQ19_002976"
     CDS             1446..1610
                     /locus_tag="OQQ19_002976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmiA family putative membrane protein"
                     /protein_id="HCS1804521.1"
                     /translation="MLISDGDYMRLAMPSGNQEPRRDPELKRKAWLAVFLGSALFWVV
                     VALLIWKVWG"
     gene            1613..1780
                     /locus_tag="OQQ19_002977"
     CDS             1613..1780
                     /locus_tag="OQQ19_002977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588450.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804522.1"
                     /translation="MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFI
                     ELFAEDDQPKQ"
     gene            1894..1989
                     /locus_tag="OQQ19_002978"
     CDS             1894..1989
                     /locus_tag="OQQ19_002978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804523.1"
                     /translation="MINTNMKYWSWMGAFSLSMLFWAELLWIITH"
     gene            2153..4828
                     /gene="acnA"
                     /locus_tag="OQQ19_002979"
                     /pseudo
     CDS             2153..4828
                     /gene="acnA"
                     /locus_tag="OQQ19_002979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415792.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
     gene            complement(4892..5482)
                     /gene="ribA"
                     /locus_tag="OQQ19_002980"
     CDS             complement(4892..5482)
                     /gene="ribA"
                     /locus_tag="OQQ19_002980"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HCS1804524.1"
                     /translation="MQLKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHT
                     PVLARVHSECLTGDALFSLRCDCGFQLEAALTQIAEEGRGILLYHRQEGRNIGLLNKI
                     RAYALQDQGYDTVEANHQLGFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTE
                     AGINIVERVPLIVGRNPNNEHYLDTKAEKMGHLLNK"
     gene            5652..6416
                     /gene="pgpB"
                     /locus_tag="OQQ19_002981"
     CDS             5652..6416
                     /gene="pgpB"
                     /locus_tag="OQQ19_002981"
                     /EC_number="3.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase B"
                     /protein_id="HCS1804525.1"
                     /translation="MRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWLLKAAFWV
                     TETVTQPWGVITHLILFGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQE
                     PRPFVIWLEKTHHIPVDEFYTLKRAERGNLVKEQLAEEKNIPQYLRSHWQKETGFAFP
                     SGHTMFAASWALLAVGLLWPRRRTLTIAILLLWATGVMGSRLLLGMHWPRDLVVATLI
                     SWALVAVATWLAQRICGPLTPPAEENREIAQREQES"
     gene            6565..6873
                     /gene="lapA"
                     /locus_tag="OQQ19_002982"
     CDS             6565..6873
                     /gene="lapA"
                     /locus_tag="OQQ19_002982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapA"
                     /protein_id="HCS1804526.1"
                     /translation="MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTL
                     LAVLFAAGFAIGWLICGLFWLRVRVSLARAERKIKRLENQLSPATDVAVVPHSSAAKE
                     "
     gene            6880..8049
                     /gene="lapB"
                     /locus_tag="OQQ19_002983"
     CDS             6880..8049
                     /gene="lapB"
                     /locus_tag="OQQ19_002983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HCS1804527.1"
                     /translation="MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVN
                     FLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLT
                     YEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKA
                     IDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNRARVSI
                     MMGRVFMAKGEYAKAVESLQRVISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAV
                     EENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRA
                     KESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL"
     gene            8242..8979
                     /gene="pyrF"
                     /locus_tag="OQQ19_002984"
     CDS             8242..8979
                     /gene="pyrF"
                     /locus_tag="OQQ19_002984"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HCS1804528.1"
                     /translation="MTLTASSSSRAVTNSPVVVALDYHNRDDALSFVDKIDPRDCRLK
                     VGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASG
                     GARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLADLGVTLSPADYAERLAALTQK
                     CGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSDAGDQRRIMTPEQALAAGVDYM
                     VIGRPVTQSVDPAQTLKAINASLQRSA"
     gene            8979..9305
                     /gene="yciH"
                     /locus_tag="OQQ19_002985"
     CDS             8979..9305
                     /gene="yciH"
                     /locus_tag="OQQ19_002985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415798.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HCS1804529.1"
                     /translation="MSDSNSRLVYSTETGRIDEPKAAPVRPKGDGVVRIQRQTSGRKG
                     KGVCLITGIDLDDAELTKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMK
                     VKLAGG"
     gene            complement(9431..9649)
                     /gene="osmB"
                     /locus_tag="OQQ19_002986"
     CDS             complement(9431..9649)
                     /gene="osmB"
                     /locus_tag="OQQ19_002986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotically-inducible lipoprotein OsmB"
                     /protein_id="HCS1804530.1"
                     /translation="MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALG
                     GAVLTDGSTLGTLGGAAVGGVIGHQVGK"
     gene            complement(9918..10667)
                     /locus_tag="OQQ19_002987"
     CDS             complement(9918..10667)
                     /locus_tag="OQQ19_002987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1804531.1"
                     /translation="MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKL
                     SYLRRAHGFAVSLDSDDVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLA
                     RTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHF
                     SKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEVIVLTDSSKFGAVHSYSIGPVE
                     RFNRVITDSKIRASDLMHLEHSKLTVHVVDI"
     gene            complement(10757..10930)
                     /locus_tag="OQQ19_002988"
     CDS             complement(10757..10930)
                     /locus_tag="OQQ19_002988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804532.1"
                     /translation="MSEFDAQRVAERIDIVLDILVAGDYHSAIHNLEILKAELLRQVA
                     ESTPDIPKAPWEI"
     gene            complement(11077..13062)
                     /gene="pdeR"
                     /locus_tag="OQQ19_002989"
     CDS             complement(11077..13062)
                     /gene="pdeR"
                     /locus_tag="OQQ19_002989"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic di-GMP phosphodiesterase"
                     /protein_id="HCS1804533.1"
                     /translation="MKTVRESTTLYNFLGSHNPYWRLTESSDVLRFSTTETTEPDRTL
                     QLSAEQAARIREMTVITSSLMMSLTVDESDLSVHLVGRKINKREWAGNASAWHDTPAV
                     ARDLSHGLSFAEQVVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLF
                     MSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKSEIFLIC
                     SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDN
                     FKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMA
                     SRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF
                     CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWRGEVRSLEALVRWQSPER
                     GLIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGINLRVAVNISARQLADQT
                     IFTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGY
                     SSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKE
                     DAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKRA"
BASE COUNT         3333 a         3083 c         3295 g         3387 t
ORIGIN      
        1 gtcgcgaaag cggccctttt ttattgcata ttattttttc ttcacaccta tacactaagg
       61 ctataaatga tatagtggtt atagttagca ccttttttat tattaaatcg tattagtcac
      121 ccgccaggtg tgacgaaaaa acgatgttct gatggcgtct aagtggatgg tttaacatga
      181 aattacaaca acttcgctat attgttgagg tggtcaatca taacctgaat gtctcatcaa
      241 cagcggaagg actttacaca tcacaacccg ggatcagtaa acaagtcaga atgctggaag
      301 acgagctagg cattcaaatt ttttcccgaa gcggcaagca cctgacgcag gtaacgccag
      361 cagggcaaga aataattcgt atcgctcgcg aagtcctgtc gaaagtcgat gccataaaat
      421 cggttgccgg agagcacacc tggccggata aaggctcact gtatatcgcc accacgcata
      481 cccaggcacg ctacgcatta ccaaacgtca tcaaaggctt tattgagcgt tatcctcgcg
      541 tttctttgca tatgcaccag ggctcgccga cacaaattgc tgatgccgtc tctaaaggca
      601 atgccgattt cgctatcgcc acagaagcgc tgcatctgta tgaagattta gtgatgttac
      661 cgtgctacca ctggaatcgg gctattgtag tcactccgga tcacccgctg gcaggcaaaa
      721 aagccattac cattgaagaa ctggcgcaat atccgttggt gacatatacc ttcggcttta
      781 ccggacgttc agaactggat actgccttta accgcgcagg gttaacgccg cgtatcgttt
      841 tcacggcaac ggatgctgac gtcattaaaa cttacgtccg gttagggctg ggggtagggg
      901 tcattgccag catggcggtg gatccggtcg ccgatccgga ccttgtgcgc gttgatgctc
      961 acgatatctt cagccacagt acaaccaaaa ttggttttcg ccgtagtact tttttgcgca
     1021 gttatatgta tgatttcatt cagcgttttg caccgcattt aacgcgtgat gtcgttgatg
     1081 cggctgtcgc attgcgctct aatgaagaaa ttgaggtcat gtttaaagat ataaaactgc
     1141 cggaaaaata atttcttgcg ttattttcgg caccttttat gtagcgaagg tgccggaata
     1201 tattctcttt tgttacttat ttttataccg tgcacaatat ttttatccct catatttata
     1261 gggtaaatta cctgtaaagt agtgtctaat tacccgcctc gcaaattcca gttttcaaat
     1321 atctatttca ggtcaaaaga ttgaattatt cactggagac gattcgtaaa ttcgctggat
     1381 ttttgactaa agtttcttta ggatttgtct catcgtatga ttaattacac caatcgttca
     1441 acgtcttgct gataagtgat ggcgattata tgaggttagc aatgccttct ggaaatcagg
     1501 aaccccgccg cgatcctgaa ttaaaacgta aagcctggct ggcggttttt cttggttctg
     1561 cacttttctg ggtggttgtc gcactgctga tttggaaagt gtggggataa ctatggtcgg
     1621 tcaggagcaa ctggagtcgt caccattatg ccagcatagt gacaatgaaa cagaaacgaa
     1681 acgggaatgt tccgtcgtta ttccagatga ctggcaacta acatcgcagc agcaagcctt
     1741 tatagaactg tttgctgaag atgatcagcc gaaacaataa ttatcatcat tcttattacc
     1801 catttttaat gaattaaagg gcttttaata caccgcagca ataacagctt gagttatctc
     1861 aacacaaaat aataaccgtt aagggtgtag cctatgatca acacaaatat gaaatattgg
     1921 tcctggatgg gcgcgttttc tctgtcgatg ctcttctggg ccgaactcct ctggatcatt
     1981 actcactgat ccttgacccc gctgcggcgg ggttgtcatt tgctttgcca caaggtttct
     2041 cctcttttat caatttgggt tgttatcaaa tcgttacgcg atgtttgtgt tatctttaat
     2101 attcaccctg aagagaatca gggcttcgca accctgtcat taaggaggag ctatgtcgtc
     2161 aaccctacga gaagccagta aggacacgtt gcaggccaaa gataaaactt accactacta
     2221 cagcctgccg cttgctgcta aatcactggg cgatatcacc cgtctaccca agtcactcaa
     2281 agttttgctc gaaaacctgc tgcgctggca ggatggtaac tcggttaccg aagaggatat
     2341 ccacgcgctg gcaggatggc tgaaaaatgc ccatgctgac cgtgaaattg cctaccgccc
     2401 ggcaagggtg ctgatgtagg actttaccgg cgtacctgcc gttgttgatc tggcggcaat
     2461 gcgcgaagcg gttaaacgcc tcggcggcga tactgcaaag gttaacccgc tctcaccggt
     2521 cgacctggtc attgaccact cggtgaccgt cgatcgtttt ggtgatgatg aggcatttga
     2581 agaaaacgta cgcctggaaa tggagcgcaa ccacgaacgt tatgtgttcc tgaaatgggg
     2641 aaagcaagcg ttcagtcggt ttagcgtcgt gccgccaggc acaggcattt gccatcaggt
     2701 taacctcgaa tatctcggca aagcagtgtg gagtgaattg caggacggtg aatggattgc
     2761 ttatccggat acactcgttg gtactgactc gcacaccact atgatcaacg gccttggcgt
     2821 gctggggtgg ggcgtgggtg ggatcgaagc agaagccgca atgttaggcc agccggtttc
     2881 catgcttatc ccggacgtag tgggctttaa acttaccggt aaattacgtg aaggtattac
     2941 cgccacagac ctggttctca ctgttaccca aatgctgcgc aaacatggcg tggtggggaa
     3001 attcgtcgaa ttttatggtg atggtctgga ttcactaccg ctggcggatc gcgccaccat
     3061 tgccaatatg tcgccagaat atggtgccac ctgtggcttc ttcccaatcg atgctgtaac
     3121 cctcgattac atgcgtttaa gcgggcgcag cgaagatcag gttgagttgg tcgaaaaata
     3181 tgccaaagcg cagggcatgt ggcgtaaccc gggcgatgaa ccgattttta ccagtacgtt
     3241 agaactggat atgaatgacg ttgaagcgag cctggcaggg ccaaaacgcc cacaggatcg
     3301 cgttgcactg cccgatgtac caaaagcatt tgccgccagt aacgaactgg aagtgaatgc
     3361 cacgcataaa gatcgccagc cggtcgatta tgttatgaac ggacatcagt atcagttacc
     3421 tgatggcgct gtggtcattg ctgcgataac ctcgtgcacc aacacctcta acccaagtgt
     3481 gctgatggcc gcaggcttgc tggcgaaaaa agccgtaact ctgggcctca agcggcaacc
     3541 gtgggtcaaa gcgtcgctgg caccgggttc gaaagtcgtt tctgattatc tggcaaaagc
     3601 gaaactgaca ccgtatctcg acgaactggg gtttaacctt gtgggatacg gttgtaccac
     3661 ctgtattggt aactctgggc cgctgcccga tcctatcgaa acggcaatca aaaaaggcga
     3721 tttaaccgtc ggtgcggtgc tgtccggcaa ccgtaacttt gaaggccgta tccatccgct
     3781 ggttaaaact aactggctgg cctcgccgcc gctggtggtt gcctatgcgc tggcgggaaa
     3841 tatgaatatc aacctggctg ctgagcctat tggtcatgat cgtaaaggcg acccggttta
     3901 tctgaaagat atctggccat cggcacagga aattgcccgt gcggtagaac aagtctccac
     3961 agaaatgttc cgtaaagagt acgcagaagt ttttgaaggc acagcagagt ggaaggaaat
     4021 taacgtcaca cgatccgata cctacggttg gcaggaggat tcaacctata ttcgcttatc
     4081 gcctttcttt gatgaaatgc aggcaacacc agcacctgtg gaagatattc acggtgcgcg
     4141 gatcctcgca atgctggggg attcagtcac cactgaccat atctctccgg cgggcagtat
     4201 taagcccgac agcccggcgg gtcgatatct acaaggtcgg ggtgttgagc gaaaagactt
     4261 taactcctac ggttcgcggc gtggtaacca tgaagtgatg atgcgcggca ccttcgccaa
     4321 tattcgcatc cgtaatgaaa tggtgcctgg cgttgaaggg gggatgacgc ggcatttacc
     4381 tgacagcgat gttgtctcta tctatgatgc cgcgatgcgc tataagcagg agcaaacgcc
     4441 gctggcggtg attgccggga aagagtatgg atcaggctcc agccgtgact ggacggcaaa
     4501 aggtccgcgt ctgcttggta ttcgtgtggt gattgccgaa tcgtttgaac gaattcaccg
     4561 ttcgaattta attggcatgg gcatcttgcc gctggaattt ccgcaaggcg tgacgcgtaa
     4621 aacgttaggg ctaaccgggg aagagaagat tgatattggc gacctgcaaa atctacaacc
     4681 cggcgcgacg gttccggtga cgcttacgcg cgcggatggt agccaggaag tcgtaccctg
     4741 ccgttgtcgt atcgacaccg cgacggagtt gacctactac cagaacgacg gcattttgca
     4801 ttatgtcatt cgtaatatgc tgaagtaaca agtatttgct tgccggttat tttgcttccg
     4861 gcaagcaaat taattccaca atgcgagagg gttatttgtt cagcaaatga cccattttct
     4921 cggctttggt atcgagataa tgttcgttat tggggttacg acctacaatc aatggtacgc
     4981 gttcaacaat attaatccct gcttcggtca gaatttcgac ttttttcggg ttattggtta
     5041 acaagcggac ttcattgacg ccaaggagtt tgaacatatc agcgcaaaga gtgaagtcgc
     5101 gctcatcagc ggcgaagcct aactggtggt tagcctctac ggtatcgtaa ccttgatcct
     5161 gcagtgcgta agcgcggatt ttattcagca gaccaatgtt acgaccttcc tgacggtgat
     5221 acagcaaaat accacggcct tcctcggcaa tttgcgtcaa tgccgcttcg agctggaagc
     5281 cacaatcgca gcgcaagctg aacagggcgt caccggtcag acattcggaa tggacgcgcg
     5341 caagtaccgg ggtatgcccg gaaatatcgc catagactag cgcgacatga tcgtgtccgg
     5401 ttgccagttc ttcaaatccc accatcagga aatcgcccca tggggttggc agtttggctt
     5461 ctgccacacg tttaagctgc atgaaattct ccagataatg ctggttctgt attggcttat
     5521 tttgccataa cgagaagggg ttcacctaat cacgacgcgt cgatcgttca cggaatggca
     5581 caaatctgtc aatttttcct ggaactggcg ttttcagtta tgattgtggg acttatcaaa
     5641 aaggagaggc catgcgttcg attgccagac gtaccgcagt gggagctgca ctattgcttg
     5701 tcatgccagt agccgtatgg atttctggct ggcgttggca acctggagaa caaagttggc
     5761 tactaaaagc ggctttttgg gttactgaaa ctgtcaccca gccctggggc gtcattacac
     5821 atttgatttt attcggctgg tttctctggt gtctgcgttt tcgcattaag gctgcctttg
     5881 tattatttgc cattctggcg gccgcaatcc ttgtgggaca aggcgttaaa tcctggatca
     5941 aagacaaagt ccaggaacca cgaccttttg ttatctggct ggaaaaaaca catcatattc
     6001 cggttgatga gttctacact ttaaagcgag cagaacgcgg aaatctagtg aaagaacagt
     6061 tggctgaaga gaaaaatatc ccacaatatt tgcgttcaca ctggcagaaa gagacggggt
     6121 ttgcctttcc ttccggtcac acgatgtttg ctgccagttg ggcactgctg gccgttggtt
     6181 tgctgtggcc gcgtcggcga acgttaacca ttgctatctt gctgctctgg gcaacgggag
     6241 tcatgggaag ccgcctgctg ctcgggatgc attggccacg cgatctggta gtagctacat
     6301 tgatttcgtg ggcgctggtg gcggtggcaa cgtggcttgc gcaacgaatt tgtgggccat
     6361 taacaccacc tgcggaagaa aatcgcgaaa tagcgcaacg agaacaagaa agttaacgct
     6421 ggttgatttt ccgaatttag cccttaaatc atcaacaatg cgcgtggatg ccatttcgca
     6481 gacggcgcga aaatggtact ttaaagggct attgcggtaa gttgaccata atttattcgc
     6541 tctaaccaca taacgggaag taatgtgaaa tatttactca ttttcttact ggtgttagcg
     6601 atcttcgtga tttcggtcac gttgggtgcg cagaacgatc aacaggtgac gtttaattat
     6661 ctgttagcgc aaggggagta ccgtatttcc acattgctgg cggtattgtt tgctgcgggg
     6721 tttgctatcg gttggttgat ttgtggcctg ttctggctgc gagttcgtgt ttccctggcg
     6781 cgcgctgaac gtaaaataaa gcgactggaa aaccagcttt cacccgcgac tgacgtggct
     6841 gtagtgccgc actcgtcagc ggcgaaggaa taactttcta tgctggagtt gttgtttctg
     6901 cttttgcctg tagccgctgc ctatggctgg tatatgggcc gcagaagtgc gcaacaaaac
     6961 aagcaagatg aagccaaccg cttgtcgcgt gattacgtag cgggggttaa cttcctgctt
     7021 agtaatcaac aggataaagc ggtagacctg tttctcgata tgcttaaaga ggatacaggc
     7081 accgttgaag cccaccttac gctcggaaac ctgttccgtt cgcgtggcga agttgatcgc
     7141 gctattcgca tccatcagac cctaatggaa agcgcctcgc tgacctatga acagcgtctg
     7201 ttggcgattc aacaactagg gcgtgattac atggccgccg ggttatacga ccgcgcggaa
     7261 gacatgttca atcagctgac cgatgaaact gacttccgca ttggcgctct gcaacagttg
     7321 ctacaaatct accaggctac cagtgagtgg cagaaagcaa ttgatgttgc cgaacgcctg
     7381 gtgaagctgg gtaaagataa acagcgcgtc gaaattgccc atttctactg tgagttagcc
     7441 ctgcagcata tggccagcga cgatctcgat cgtgccatga ccttgctaaa aaaaggggcg
     7501 gcggcagata aaaacagagc ccgcgtatcc atcatgatgg gacgcgtgtt tatggcgaaa
     7561 ggagaatacg ccaaagccgt cgaaagtttg caacgcgtga tatcccagga cagagaactg
     7621 gtcagcgaaa cgctggaaat gttgcaaacc tgctatcagc agttgggtaa aactgccgaa
     7681 tgggcagaat tcctgcaacg cgcggtggaa gagaacaccg gtgccgatgc tgaattgatg
     7741 cttgctgata tcatcgaagc gcgcgacggt agtgaggccg cacaggtcta tattacgcgc
     7801 cagcttcagc gtcatccgac catgcgtgtg ttccataagt taatggatta ccacttaaat
     7861 gaagcggaag aagggcgtgc caaagagagc ctgatggtgc tgcgtgacat ggttggcgaa
     7921 aaggtacgta gtaagcctcg ttatcgctgc cagaaatgtg gttttaccgc atacaccctc
     7981 tactggcatt gtccgtcttg tcgggcctgg tcaaccatta aaccgattcg cggtcttgat
     8041 ggcctgtaat ttttaaaaaa atccgacttt agttacaaca tgctagttat tgatgttcca
     8101 ttgtgctccg gcaacgacgg agcagaaaaa gcctgccagg ggaaaaatcg caactgttaa
     8161 ttttttattt ccacgggtag aatgctcgcc gtttacctgt ttcgcgccac ttccggtgcc
     8221 catcatcaag aaggtctggt catgacgtta actgcttcat cttcttcccg cgctgttacg
     8281 aattctcctg tggttgttgc ccttgattat cataatcgtg atgacgcgct gtcctttgtc
     8341 gacaagatcg acccacgcga ttgtcgtctg aaggtcggca aagagatgtt tacattgttt
     8401 gggccacagt ttgtgcgcga acttcaacag cgtggttttg atatctttct tgacctgaaa
     8461 ttccacgata ttcctaacac tgcagcgcac gctgtcgctg ctgcagctga cttaggcgtg
     8521 tggatggtga atgttcatgc ctctggtggg gcgcgtatga tgaccgcagc gcgtgaggca
     8581 ctggttccgt ttggcaaaga tgcaccgctt ttgattgctg taacagtgtt gaccagcatg
     8641 gaagctagcg acctggccga tcttggcgtg acactgtcac ctgcagatta tgcagaacgt
     8701 ctggcggcac tgacgcaaaa atgtggcctt gatggtgtgg tgtgttctgc tcaggaagct
     8761 gtgcgcttta aacaggtatt cggtcaggag ttcaaactgg ttacaccggg cattcgtccg
     8821 caggggagtg atgctggtga ccagcgccgc attatgacgc cagaacaggc gttggcggct
     8881 ggtgttgatt atatggtgat tggtcgcccg gtaacgcaat cggtagatcc agcgcaaaca
     8941 ctgaaagcga tcaacgcctc tttacagcgg agtgcatgat gagtgattcc aacagccgtc
     9001 tggtctactc aacggaaacc ggacgtattg atgagccaaa agcggcccca gtacgcccta
     9061 aaggcgatgg tgtggtgcgt attcagcgtc agaccagtgg acgtaaaggt aagggcgttt
     9121 gcctgattac cggtatcgat ctcgatgatg ccgaactgac aaaacttgca gcggaactga
     9181 agaaaaaatg cggctgcggc ggagcagtta aagatggagt tattgaaatc cagggcgata
     9241 agcgtgattt attaaaatca ctacttgaag cgaaagggat gaaggtaaaa ctcgcaggcg
     9301 gttaacataa aaagccacgg atatatccgt ggctttcgaa tattttactg tgtgtattat
     9361 tcagttattt cgtactgaac aaaatcaagc gtattataat tgcgagtcga taatcgacat
     9421 ttatttacga ttatttaccg acctggtgac caataacacc accgacagct gcaccaccta
     9481 atgtacccaa cgtactgcca tcggtcagta ctgcaccgcc taatgcccct gcacccgcgc
     9541 cgattgcggt gttgcggtcc cgtttagacc agttagaaca ggcactcaga gacattgcca
     9601 aagtaattgc cagaacagcc gcggtcattt ttttgctcgt tacaaacata atactctctc
     9661 ctgaatttat gattcacgga agtaagctct ctataactat aatagctaag aataagcctg
     9721 gtgaaattat tccgtgaaat ctgctcgcgc gcagggttat atcacgcagg tgataatgac
     9781 ttcctgttat atcgctgata ataattttat atcttaagcg tgttaataac aggtaaatag
     9841 tcttaattat caaccaggaa tcatcttaga gcggatgatt tgccaaactg caaatcatcc
     9901 gtagagaagg gaaatggtta aatgtcaacg acgtgaacgg tgagtttact gtgctcaaga
     9961 tgcatcagat cgctggcgcg tattttcgaa tcggtaatca cgcgattgaa tcgctcaacg
    10021 ggaccgatgg agtatgaatg tacagcacca aatttcgagc tgtcagtcag gactatcact
    10081 tcgcactctt tttccagcac ggcattgacc acatcggtac gcatcatatc gcgaccggtg
    10141 aatccagttt caggttgcca gccatcaata ccaataaatg ctttgctgaa atgcacctgc
    10201 tggatgcact ggcgtgtcaa cgggccaacc atactttcgc tttttttctg gtacacgcca
    10261 ccgagcaaaa tgacttcaca aggcgcgtct ttcagcaaat gcgcgatgta gctgctgacc
    10321 gtgatgatag tgacattttt cttctgctcc cccagagtcc gggcgagcag ggcattgctg
    10381 ctgccatttt cgataaagat ggtttcgccc ggttgaacca gtgacgcggc aaactcggcg
    10441 agttcacgct tcagcgtata gttgctcatc atacgggttt cgacgtcatc actatcaagc
    10501 gaaactgcaa agccatgtgc acggcggagg taactcagtt tttcgagggt gttgagatcc
    10561 tggcgaatgg taacttcaga aactccagtg gcttttgcca gatcggttac gctaacctga
    10621 ccctggtcaa tgaccatctg tagaatagtt tgttgtcggg aattcatcgc tgtaattctt
    10681 ataacgttat aatactaaat aaaaaaatac tgacgcgccg ggcatcctca aataggaaaa
    10741 cctgaaggca cgattgttaa atctcccacg gtgccttcgg gatgtctggc gtagattcag
    10801 caacctggcg caagagttct gctttaagta tctcgagatt atggatcgca gagtggtaat
    10861 cgcctgccac aaggatatct aacacaatat caatacgttc ggcaacgcgc tgggcatcaa
    10921 attcagacat caaggacatc cttatagcaa aagtggaaaa tgaataatgc aaaaattgcc
    10981 gctaaaagag aagtgtttaa cagcaacggc taattatcat ccaggaatac gatatataat
    11041 gacgggatat agcgctaagt atatatattc atctacttat gcgcgcttca gatagcgttt
    11101 ataccagcgt tcgaaggcga cggcgggcat cggtttggca aacaaaaatc cttgccgctc
    11161 attgatcccg ttcttggtta aaaaagcatc ttcctttgca ctctctacac cttcggcgat
    11221 cacctgaaga ttcaatgcct gggccacagc gacgatcgcc cggaccagtg actgcgagac
    11281 aggttgtttg tgaatatctc gaacaaaaac ctggtcaagt ttgatggcat cgatcggaaa
    11341 gcgcgccagt tgcgaaagtg aagagtagcc ggtaccaaaa tcatccagat gcacttgcgc
    11401 acctagttgg ctaaattgtt gaataacaga cagtgccagt tcatcattct caatcagaca
    11461 actctctgtc agttcaacat ctatagggca gtattcaaaa ttgagttcct ggagaacctg
    11521 tttcagggcg gtgaaaatgg tttgatcggc gagctgacgt gcagaaatat ttaccgccac
    11581 tcgcaggttt atgcctttat cccgccactt tgccacctgg cgtacgacat cgagaatcac
    11641 ccaacggcct aaaggcacaa ttagccctga ctcttcggcg taggaaatga agtccaacgg
    11701 tggaatcaac ccacgttcag gtgactgcca acgtactagt gcttccagac tgcgcacttc
    11761 gccacgccag gtgattttcg gttgatagtg aataaccaac tgatcgtttt ccagtgcttt
    11821 acgcaagttg gtatccagcc agagatattc aaatacccgt tgattcattt ctggggtaaa
    11881 aacgcaaaat tgtcctcgtc cgccttcctt cgctgtgtac attgctgtgt cggcgtgacg
    11941 aataatagcc gtgctgtctg aaccatgttc gggagagagt gcaataccta ctgaacagct
    12001 ggtataaact tcaattaaac caatgcgaaa ggggagccgt aagcgggtca aaattcgtga
    12061 tgccattgct tccagcgcgc tttgtgaggt gttggatgcc agtaccagaa actcatcccc
    12121 acctggacgc gccaacacct ggtcatgttc gagacagctt aaaatagcca atgacacgtc
    12181 gcgtaataac tggtcaccaa acaaatgccc ataggcgtcg ttgacctttt tgaaattatc
    12241 caaatcaaga tacacaaccc caactttatt gttatctgca tgattaatag cgtgatcgat
    12301 taaatcctgc attgcgttac gattcggcag tccggtgata ctgtcggtat ttgccagaat
    12361 acgcagtcgc tcctgagcgc ggcgctcttc ggtaatgtcg gtgccggaac agattaaaaa
    12421 aatctcgctt ttgccactgc cgctgtggac aaatttattg cgaaacagaa acagccgctg
    12481 gcctttacat gttggtatcc acagttcgac ttcatatgca ttgccgcttc gaaaaaatac
    12541 acggttattg cgcctggatg ccgcagcttc acgacggctc ataaacagtt taaacacgct
    12601 ttggccaatg acgtcgtgtt ctttcaaccc agtgtaatct tcacataacc gattgaagcg
    12661 ttggatattc ccccggctgt cgagaatcac tattgcggaa tgtgcttcag aaactacctg
    12721 ctcagcaaag gaaagcccgt gtgataaatc acgagcaact gccggtgtgt catgccatgc
    12781 agacgcgttg ccagcccatt cccgtttatt gatttttcgt cctaccagat gcacagaaag
    12841 atcgctctca tcgacggtca gactcatcat caggctggag gtgatgaccg tcatttccct
    12901 gatgcgagca gcctgttcgg cagataactg caaagtacga tcaggttctg tggtttcggt
    12961 ggtagaaaag cgcaaaacat cgctgctttc cgtcaaccgc cagtatggat tgtgcgatcc
    13021 gagaaagttg tacaacgttg tggactccct aacggttttc atgatgcata tcctccggtt
    13081 aaataaaagg aacaacat
//
LOCUS       DAJVSY010000117        13097 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.117, whole genome shotgun sequence.
ACCESSION   DAJVSY010000117 DAJVSY010000000
VERSION     DAJVSY010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13097
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.117"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            4..1632
                     /locus_tag="OQQ19_002990"
     CDS             4..1632
                     /locus_tag="OQQ19_002990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001338794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flotillin family protein"
                     /protein_id="HCS1804534.1"
                     /translation="MFTAIIAVCILFIIGIIFARLYRRASAEQAFVRTGLGGQKVVMS
                     GGAIVMPIFHEIIPINMNTLKLEVSRSTIDSLITKDRMRVDVVVAFFVRVKPSVEGIA
                     TAAQTLGQRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENFVQGVQNTVAED
                     LSKNGLELESVSLTNFNQTSKEHFNPNNAFDAEGLTKLIQETERRRRERNEVEQDVEV
                     AVREKNRDALSRKLEIEQQEAFMTLEQEQQVKTRTAEQNARIAAFEAERRREAEQTRI
                     LAERQIQETEIEREQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKSIAIAAKSEQQS
                     QAEARANLALAEAVSAQQNVETTRQTAEADRAKQVALIAAAQDAETKAVELTVRAKAE
                     KEAAEMQAAAIVKLAEATRKKGLAEAEAQRALNDAINVLSDEQTSLKFKLALLQALPA
                     VIEKSVEPMKSIDGIKIIQVDGLNRGSAAGDANTGNVGGGNLAEQALSAALSYRTQAP
                     LIDSLLNEIGVSGGSLAALTSPLTSTTPVAENVE"
     gene            1871..1930
                     /locus_tag="OQQ19_002991"
     CDS             1871..1930
                     /locus_tag="OQQ19_002991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS1804535.1"
                     /translation="MMKLVIILIVLLLVSFAAY"
     gene            2247..2306
                     /gene="ibsE"
                     /locus_tag="OQQ19_002992"
     CDS             2247..2306
                     /gene="ibsE"
                     /locus_tag="OQQ19_002992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsE"
                     /protein_id="HCS1804536.1"
                     /translation="MMKFVIILVVLLLLSFPTY"
     gene            complement(2426..3859)
                     /gene="hldE"
                     /locus_tag="OQQ19_002993"
     CDS             complement(2426..3859)
                     /gene="hldE"
                     /locus_tag="OQQ19_002993"
                     /EC_number="2.7.1.167"
                     /EC_number="2.7.7.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase/D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase HldE"
                     /protein_id="HCS1804537.1"
                     /translation="MKVTLSEFERAGVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVN
                     TIEERPGGAANVAMNIASLGANARLVGLTGIDDAARALSKSLADVNVKCDFVSVPTHP
                     TITKLRVLSRNQQLIRLDFEEGFEGVDPQPLHERINQALSSIGALVLSDYAKGALASV
                     QQMIQLARKAGVPVLIDPKGTDFERYRGATLLTPNLSEFEAVVGKCKTEEEIVERGMK
                     LIADYELSALLVTRSEQGMSLLQPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAA
                     GNSLEEACFFANAAAGVVVGKLGTSTVSPIELENAVRGRADTGFGVMTEEELKLAVAA
                     ARKRGEKVVMTNGVFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRLKGDSRPVNP
                     LEQRMIVLGALEAVDWVVSFEEDTPQRLIAGILPDLLVKGGDYKPEEIAGSKEVWANG
                     GEVLVLNFEDGCSTTNIIKKIQQDKKG"
     gene            complement(3907..6747)
                     /gene="glnE"
                     /locus_tag="OQQ19_002994"
     CDS             complement(3907..6747)
                     /gene="glnE"
                     /locus_tag="OQQ19_002994"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HCS1804538.1"
                     /translation="MKPLSSPLQQYWQTVVERLPEPLAEKSLSAQAKSVLTFSDFVQD
                     SVIAHPEWLTELESQSPQADEWQHYAAWLQEALSNVSDEAGLMRELRLFRRRIMVRIA
                     WAQTLALVTEESILQQLSHLAETLIVAARDWLYDACCREWGTPCNAQGEAQPLLILGM
                     GKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIKVLDQPTQDGF
                     VYRVDMRLRPFGESGPLVLSFAALEDYYQEQGRDWERYAMVKARIMGDSEGVYANELR
                     AMLRPFVFRRYIDFSVIQSLRNMKGMIAREVRRRGLTDNIKLGAGGIREIEFIVQVFQ
                     LIRGGREPSLQSRSLLPTLSVIAALHLLSENDAEQLRVAYLFLRRLENLLQSINDEQT
                     QTLPSDELNRARLAWAMDFADWPQLTGALTAHMTNVRRVFNELIGDDESETQEESLSE
                     QWRELWQDALQEDDTTPVLAHLSEDDRKQVLTLIADFRKELDKRTIGPRGRQVLDHLM
                     PHLLSDVCAREDAAVTLSRITALLVGIVTRTTYLELLSEFPAALKHLISLCAASPMIA
                     SQLARYPLLLDELLDPNTLYQPTATDAYRDELRQYLLRVPEDDEEQQLEALRQFKQAQ
                     LLRIAAADIAGTLPVMKVSDHLTWLAEAMIDAVVQQAWVQMVARYGKPNHLNDREGRG
                     FAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMHLFN
                     TRTSSGILYEVDARLRPSGAAGMLVTSAEAFADYQKNEAWTWEHQALVRARVVYGDPQ
                     LTAHFDAVRREIMMLPREGKTLQTEVREMREKMRAHLGNKHRNRFDIKADEGGITDIE
                     FITQYLVLRYAHEKPKLTRWSDNVRILELLAQNDIMEEQEAMALTRAYTTLRDELHHL
                     ALQELPGHVSEDCFTAERDLVRASWQKWLVEE"
     gene            complement(6770..8071)
                     /gene="ygiF"
                     /locus_tag="OQQ19_002995"
     CDS             complement(6770..8071)
                     /gene="ygiF"
                     /locus_tag="OQQ19_002995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic triphosphatase"
                     /protein_id="HCS1804539.1"
                     /translation="MAQEIELKFIVNHSAVEALRDHLNTLGGEHHDPVQLLNIYYETP
                     DNWLRGHDMGLRIRGENGRYEMTMKVAGRVTGGLHQRPEYNVALSEPTLDLAQLPTEV
                     WPNGELPADLASRVQPLFSTDFYREKWLVAVDDSRIEIALDQGEVKAGEFAEPICELE
                     LELLSGDTRAVLKLANQLVSQTGLRQGSLSKAARGYHLAQGNPAREIKPTTILHVAAK
                     ADVEQGLEAALELALAQWQYHEELWVRGNDAAKEQVLAAIGLVRHTLMLFGGIVPRKA
                     STHLRDLLTQCEATIASAVSAVTAVYSTKTAMAKLALTEWLVSKAWQPFLDAKAQSKM
                     SDSFKRFADIHLSRHAAELKSVFCQPLGDRYRDQLPRLTRDIDSILLLAGYYDPVVAQ
                     AWLENWQGLRHAIATGQRIEIEHFRNEANNQEPFWLHSGKR"
     gene            8313..8933
                     /locus_tag="OQQ19_002996"
     CDS             8313..8933
                     /locus_tag="OQQ19_002996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HCS1804540.1"
                     /translation="MPKLRLIGLTLLALSATAVSHAEETRYVSDELNTWVRSGPGDHY
                     RLVGTVNAGEEVTLLQTDANTNYAQVKDSSGRTAWIPLKQLSTEPSLRSRVPDLENQV
                     KTLTDKLTNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNELIVAQKKVDAASV
                     QLDDKQRTIIMQWFMYGGGVLGLGLLLGLVLPHLIPTRKRKERWMN"
     gene            8997..10235
                     /gene="cca"
                     /locus_tag="OQQ19_002997"
     CDS             8997..10235
                     /gene="cca"
                     /locus_tag="OQQ19_002997"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused tRNA nucleotidyltransferase/2',3'-cyclic
                     phosphodiesterase/2' nucleotidase/phosphatase Cca"
                     /protein_id="HCS1804541.1"
                     /translation="MKIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGR
                     DFPVFLHPQTHEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDD
                     NGEIIDPYNGLGDLQNRLLRHVSPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLM
                     REMTHAGELEHLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPA
                     PARWHPEIDTGIHTLMTLSMAAMLSPQVDVRFATLCHDLGKGLTPPELWPRHHGHGPA
                     GVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQR
                     VEQLALTSEADVRGRTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFKGVEIREEL
                     TRRRIAAVASWKEQRCPKPD"
     gene            complement(10392..11213)
                     /gene="bacA"
                     /locus_tag="OQQ19_002998"
     CDS             complement(10392..11213)
                     /gene="bacA"
                     /locus_tag="OQQ19_002998"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708867.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HCS1804542.1"
                     /translation="MSDMHSLLIAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDT
                     AKTFEVVIQLGSILAVVVMFWRRLFGLIGIHFGRPLQHEGESKGRLTLIHILLGMIPA
                     VVLGLLFHDTIKSLFNPINVMYALVVGGLLLIAAECLKPKEPRAPGLDDMTYRQAFMI
                     GCFQCLALWPGFSRSGATISGGMLMGVSRYAASEFSFLLAVPMMMGATALDLYKSWGF
                     LTTGDIPMFAVGFITAFVVALIAIKTFLQLIKRISFIPFAIYRFIVAAAVYVVFF"
     gene            complement(11304..11672)
                     /gene="folB"
                     /locus_tag="OQQ19_002999"
     CDS             complement(11304..11672)
                     /gene="folB"
                     /locus_tag="OQQ19_002999"
                     /EC_number="4.1.2.25"
                     /EC_number="5.1.99.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708868.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional dihydroneopterin
                     aldolase/7,8-dihydroneopterin epimerase"
                     /protein_id="HCS1804543.1"
                     /translation="MDIVFIEQLSVITTIGVYDWEQTIEQKLVFDIEMAWDNRKAAKS
                     DDVADCLSYADIAETVVSHVEGARFALVERVAEEVAELLLARFNSPWVRIKLSKPGAV
                     ARAANVGVIIERGNNLKENN"
     gene            11777..12394
                     /gene="plsY"
                     /locus_tag="OQQ19_003000"
     CDS             11777..12394
                     /gene="plsY"
                     /locus_tag="OQQ19_003000"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HCS1804544.1"
                     /translation="MSAIAPGMILIAYLCGSISSAILVCRLCGLPDPRTSGSGNPGAT
                     NVLRIGGKGAAVAVLIFDVLKGMLPVWGAYELGVSPFWLGLIAIAACLGHIWPVFFGF
                     KGGKGVATAFGAIAPIGWDLTGVMAGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKP
                     QFTFPVSMLSCLILLRHHDNIQRLWRRQETKIWTKFKRKREKDPE"
     gene            complement(12407..>13097)
                     /gene="ttdR"
                     /locus_tag="OQQ19_003001"
                     /gene_synonym="dan"
     CDS             complement(12407..>13097)
                     /gene="ttdR"
                     /locus_tag="OQQ19_003001"
                     /gene_synonym="dan"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-binding transcriptional activator TtdR"
                     /protein_id="HCS1804545.1"
                     /translation="RLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPEL
                     QVHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQ
                     SLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGI
                     MLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQR
                     LGKPDEGYQVM"
BASE COUNT         3162 a         3685 c         3284 g         2966 t
ORIGIN      
        1 tggatgttta ccgcgattat tgccgtatgc attctgttta ttattggaat tattttcgcc
       61 aggctctatc gtcgcgcttc ggcagagcaa gcttttgttc gtactggttt aggtgggcaa
      121 aaagtggtga tgagcggtgg cgcaatcgtg atgccgatct ttcatgaaat aatccccatc
      181 aatatgaata ctctgaagct ggaagtcagc cgctcaacca ttgatagcct gattacgaaa
      241 gatcgtatgc gtgtcgatgt agtagtcgct ttctttgtac gggtaaaacc gtctgtagaa
      301 ggcatcgcca ctgcggcgca gacgttgggg caacgcacgc tatcaccaga agacttacgt
      361 atgttggttg aagataaatt tgtcgatgcc ctccgtgcaa cagctgcaca aatgaccatg
      421 catgagttac aggatacccg cgagaacttc gtgcagggag tacaaaatac tgtcgcagaa
      481 gacctgtcga aaaacggtct tgagctggaa agcgtttcac ttaccaactt taaccagacc
      541 tcgaaagaac atttcaatcc gaacaatgcc tttgacgccg aaggtttaac caaactgatt
      601 caggagacgg agcgccgtcg tcgcgaacgt aacgaagttg aacaggatgt agaagttgcg
      661 gtgcgtgaga aaaaccgtga tgcactttcg cgcaagttgg agattgaaca acaagaagcg
      721 tttatgacgc ttgagcagga gcagcaggtt aaaacccgta ctgccgaaca gaatgcacgt
      781 attgcggctt ttgaagctga acgtcgtcgt gaagcagagc agacgcgaat tctggctgaa
      841 cgacaaattc aggaaacgga gatcgagcgc gagcaggccg tccgctcaag aaaggttgag
      901 gctgaacgtg aagttcgtat taaagagatc gaacagcagc aggtcaccga aatcgccaac
      961 cagacgaaat cgatcgctat tgccgccaaa tcggaacaac agtcccaggc agaagcgcgt
     1021 gctaaccttg cactcgcaga agcagtaagt gcgcaacaaa acgtagaaac cactcgccag
     1081 accgcagaag ccgatcgtgc taaacaagtt gccctaatcg ctgccgcgca ggatgcagaa
     1141 accaaagcgg ttgaactgac cgtgcgggcg aaagcagaaa aagaagccgc agagatgcag
     1201 gcggcggcta tcgttaagtt agccgaagct acacgtaaaa agggtctggc ggaagcagaa
     1261 gcacaacgtg cgctgaacga tgctatcaac gtactttctg atgaacaaac cagccttaaa
     1321 ttcaaactgg ccttgttgca ggcgctacct gcggtaatag aaaaatccgt tgagccgatg
     1381 aaatctattg acggtatcaa gattattcag gtcgatggtc tgaatcgtgg cagcgctgcg
     1441 ggtgatgcaa acacgggtaa tgtggggggc ggaaacctgg cggaacaagc attatcagcc
     1501 gctctctctt accgcacaca ggcaccgctg attgactcct tgctcaatga aattggcgtt
     1561 tcaggcggct cactggcggc attgacttca cccttaacct caacaactcc cgtcgccgaa
     1621 aacgtagaat aaattttcag ctatgaacgt ccctggcaca aaaagccggg gattttttat
     1681 atctgcgttc cgctaaaaac tgcaaatgat caggtcgttg caacgttttg cgtgaccgct
     1741 cggggaaggc aaaactgcct ctgggaaagc gttgcgcgag gtccggcgct catcaacaat
     1801 cggggagtca gcaaagggct gaaacgggaa agcccctccc gaggaagggg ccttacagaa
     1861 ggaaagggtt atgatgaagc tcgtcatcat actgattgtg ttgttactcg taagtttcgc
     1921 agcttattaa cagccaatca gaggggggag aaatcctccc tcacccttgt tcctttactt
     1981 taggttgaaa aaaaatcagc gtcaagaagg tttcattaac acatatccct agcccaaaaa
     2041 gccggggatt ttttatatct gcgttccgct aaaaggtgca aatgctcagg acgttgcagc
     2101 gttttgcgtg accgctcggg gaaggcaaaa ctgcttcagg gaaagcgttg cgcggggtcc
     2161 ggcgctcatc aacaatcggg gagtcagcaa ggggctgaaa cgggaaagcc cctcccgagg
     2221 aaggggcctt atagaaggaa agggttatga tgaagttcgt catcatactg gttgtgttgt
     2281 tactgttaag tttcccgact tactaacaac tgatcagagg ggggagaaat cctcccttac
     2341 ccttgttcct ttactttagg ttgaaaaaac aacagcgtca ataggcctgc ctgctacgaa
     2401 gcgagatctg tgaaccgctt tccggttagc cttttttatc ctgttggatc ttcttgatga
     2461 tgttagtggt cgagcaaccg tcttcgaagt tgagcaccag cacttcgccg ccgttggccc
     2521 agacttcttt actcccggcg atctcttctg gtttatagtc gccgcccttc accagtaaat
     2581 ctggcaggat cccggcgatc aagcgctgcg gcgtgtcttc ttcaaacgac accacccagt
     2641 cgaccgcttc cagtgcgccc agcacaatca tacgctgttc gagcgggtta acggggcggg
     2701 aatccccttt cagccgtttg gtggaggcat cgctgttcac agcgacaatc agacggtcac
     2761 ccagtttgcg agcatttgcc agataggaga cgtgcccggc atgcaggatg tcaaagacac
     2821 cgttggtcat taccaccttt tcgccgcgtt tacgcgctgc cgctacggcc agcttcagtt
     2881 cctcttcggt catcacgcca aagccggtat ctgcgcgccc acgcactgca ttttccagct
     2941 cgatcggcga aaccgtggag gttcccagtt tgccgaccac cacgccagcc gccgcattgg
     3001 caaagaagca ggcttcttcc agcgaattac ccgctgccag cgttgccgcc aggacgccaa
     3061 tcaccgtgtc gcccgcaccg gtaacgtcat acacttcctg cgcctgggtt ggcatatgca
     3121 gcggcgcttt acccggttgc agcagcgaca taccctgttc ggaacgggtc actaacagag
     3181 ccgagagttc gtaatcggca atcagtttca tgccgcgctc aacaatctct tcttcggtct
     3241 tacatttacc gacaacagct tcaaattccg agagattcgg cgttaacagc gtagcgccgc
     3301 ggtagcgctc aaaatcggta ccttttggat caatcagcac cggaacgccc gctttacgcg
     3361 ccagttggat catctgctgt acgcttgcca gcgcaccttt ggcgtagtca gaaagcacca
     3421 gcgcgccaat cgaactcagc gcctgattaa tccgctcgtg cagcggctgc ggatcaacgc
     3481 cttcgaaacc ttcttcgaaa tccagacgga tcagctgttg gttgcgggaa agtacccgta
     3541 atttggtgat ggtcggatgc gtcggtacag aaacgaagtc gcatttgacg ttgacgtcgg
     3601 ccagagattt actcagcgcg cgcgctgcat cgtcaatgcc cgtcaacccg accaggcgtg
     3661 cattagcacc gagagaagcg atattcatcg ccacgttagc cgcgccgccc ggacgttctt
     3721 cgatggtatt cactttaacc acgggcaccg gcgcttccgg cgagatacgg ctggtgggac
     3781 cgtaccagta acgatccagc attacatcac caaccaccat cactcctgca cgttcaaact
     3841 ctgacagcgt tactttcatt cctgtctcct gagagattca aaatttgcgc gcgataatac
     3901 catacttcat tcttccacca gccacttctg ccagcttgcc cgcaccagat cacgctctgc
     3961 ggtgaagcaa tcctccgaca catggcccgg caattcctgt aatgccagat gatgaagttc
     4021 atcgcgcagc gtcgtgtaag cacgggtcag cgccatcgct tcctgctctt ccataatgtc
     4081 gttttgcgcc agcagctcca gaatacgcac gttgtctgac cagcgcgtta acttcggttt
     4141 ttcatgagcg tagcgcaaca ccagatattg ggtaataaat tcgatatcgg taattccgcc
     4201 ttcatcggct ttgatatcaa agcgattacg atgtttattg ccgagatgag cgcgcatttt
     4261 ctcgcgcatt tcccgcactt ccgtttgcag agttttacct tcacgcggca gcatcataat
     4321 ctcgcgacgc actgcgtcaa agtgcgcggt gagctgcgga tcgccgtaca ctacacgcgc
     4381 acgcaccagc gcctgatgct cccacgtcca ggcctcgttt ttctgataat cagcaaatgc
     4441 ttctgcggat gtcaccagca ttcccgccgc cccggacgga cgcagtcgtg catccacttc
     4501 atacaaaatg ccggaagagg ttcgcgtatt gaacagatgc ataatgcgtt gcgccagacg
     4561 cagataaaac tgtcgcccgt cgatttcccg ctcgccgtca gtcatcgcat ccattgggca
     4621 atcatggagg aagatcaggt caagatcgga actgtagcct aactcccagc cgcccagctt
     4681 gccgtagccg accaccgcaa aaccacggcc ttcgcgatcg ttgaggtgat ttggcttacc
     4741 gtagcgggcc accatttgaa cccacgcctg ctgaacgacg gcatctatca tagcctctgc
     4801 cagccaggtt aagtgatcgc tcactttcat caccggtagc gtaccagcga tatccgctgc
     4861 ggcgatgcgt aacagctgcg cctgtttgaa ctgacgcagc gcctcaagct gttgctcttc
     4921 gtcatcttcc ggcacgcgca gcaaatactg gcgcaactca tcgcggtagg catcggtcgc
     4981 cgtcggctgg taaagagtgt ttggatcgag caattcatcc agcaataatg gataacgcgc
     5041 cagctggctg gcaatcatcg gcgatgcggc acacagagaa atcaaatgtt taagcgccgc
     5101 agggaattca ctgagcaatt ctaaataggt ggtgcgggta acaatcccca ccagcaaggc
     5161 ggtaatgcgc gacagcgtaa cggcagcgtc ttcacgcgca cagacatcac ttagcagatg
     5221 tggcatcaga tggtcgagca cctgacgtcc tcgcggcccg atagtacgct tatccagctc
     5281 tttgcggaaa tcagcaatca gcgttaggac ctgtttgcga tcatcctcgc taagatgcgc
     5341 cagcactggc gtagtgtcat cttcctgcaa cgcatcctgc cacagctcac gccactgttc
     5401 cgacagcgac tcttcctgag tttcactttc gtcgtcgcca atcaattcat taaacacccg
     5461 gcgcacattg gtcatatgtg cggtcagcgc cccggtcagt tgcggccagt cagcaaagtc
     5521 catcgcccac gccagccgcg cacggttaag ctcatcagaa ggaagcgttt gggtttgttc
     5581 gtcgttaatg ctttgcagca ggttttccag acgccgcagg aacagatatg ccactcgcaa
     5641 ttgttcagca tcgttttcag aaagcagatg cagcgcggca atgacgctga gcgttggcag
     5701 taaagagcgc gactgcagcg acggttcgcg cccaccgcga atgagctgga acacctgaac
     5761 gataaattca atttcgcgaa tgccgcctgc gccgagtttg atattgtcgg tcaaaccacg
     5821 tcgacgcact tcacgggcaa tcatcccttt catgttgcgc agcgactgaa tcacgctgaa
     5881 atcgatgtaa cgacggaaaa caaacgggcg cagcatcgca cgcaactcgt tagcatagac
     5941 gccttcgcta tcgcccataa tccgcgcctt gaccatcgcg taacgctccc agtcgcgccc
     6001 ctgctcctgg taataatcct ccaacgcggc aaagctcagc accagcgggc cactttcgcc
     6061 aaacggacgc agccgcatat ccacgcgata gacgaagcca tcctgcgttg gttgatccaa
     6121 cactttaatc agccgctgcc ccatgcgggt aaaaaactgc gcgttatcca gttcccggcg
     6181 tccgccctgc gtacaaccat gttccggcca ggcaaaaatc agatcgatat ctgaggagaa
     6241 attcagttcc ccaccgccca gcttacccat gcctaaaatc agcagcggtt gcgcttcgcc
     6301 ctgcgcattg cacggcgttc cccactcgcg gcagcaagcg tcatacagcc agtcacgcgc
     6361 ggcgacaatc agcgtctccg ccagatggct gagctgctgc aatatgctct cttcagtaac
     6421 caaagccagc gtttgcgccc aggcgatgcg caccataatg cgccgccgga atagccgcag
     6481 ctcgcgcatt aacccggctt cgtcactcac attgctgagc gcctcctgca accatgccgc
     6541 gtaatgctgc cattcatcag cctgcggcga ttggctttcc agttccgtca gccactctgg
     6601 atgcgcaatc acgctgtcct gcacaaaatc actgaaagta agtactgact tcgcctgtgc
     6661 gctaagtgat ttctcggcta aaggctctgg cagccgctca acaacggtct gccagtactg
     6721 ctgtaacggt gaagagagcg gcttcataag cgattttatc cttgcctgat taacgttttc
     6781 cgctgtgcaa ccagaacggt tcctgattgt ttgcctcatt acggaaatgt tcaatttcaa
     6841 tgcgttgccc ggtcgcaata gcgtgacgca gcccctgcca gttctccagc caggcttgcg
     6901 cgacgacagg atcatagtaa cccgccagca acagtattga gtcaatatca cgcgtcagac
     6961 gtggcaactg gtcacggtag cgatcgccca acggctggca gaaaacgctt ttcagttcag
     7021 cggcatggcg ggaaagatgg atatcggcaa agcgtttgaa ggaatcgctc attttactct
     7081 gcgctttggc atctaaaaac ggctgccagg ctttgcttac cagccattcg gtcaacgcca
     7141 gcttcgccat tgccgttttg gtagagtaga ccgccgtcac ggcagaaacc gcagaagcga
     7201 tggtcgcttc gcattgagtc agcaaatcgc gtaagtgagt gctcgctttg cgcggcacaa
     7261 taccaccgaa cagcatcagt gtatgacgga ccagaccaat ggctgccagc acctgttctt
     7321 tcgccgcatc gttgccgcgt acccacagtt cttcatgata ctgccattgc gctaacgcca
     7381 gctcgagcgc cgcttccagc ccctgttcca catcggcttt tgccgcaaca tgcaaaatgg
     7441 tggtcggttt gatttcacgc gccggattgc cctgcgccag atgatagcca cgcgccgctt
     7501 tgctcaggct gccctggcgt aatccggttt gcgataccag ttggttcgcc agtttcagca
     7561 ccgcgcgcgt gtcgccgcta agcagttcca gttccagctc acagataggt tcagcaaatt
     7621 cccccgcttt cacctccccc tgatcgagag cgatttcaat tcggctgtca tcgaccgcca
     7681 ccagccattt ttcgcgataa aaatcggtgc tgaacagcgg ttgtacgcgg gaagcgagat
     7741 cggcgggcaa ttcgccgttc ggccagactt ccgtcggtaa ctgcgccagg tcgagcgtcg
     7801 gttcgctcaa cgccacgtta tattccgggc gctggtgtaa gccgcctgtc actcttcctg
     7861 caactttcat ggtcatctca tagcgaccgt tttcgccacg aatacgtaag cccatatcgt
     7921 gcccacgcag ccagttatcc ggcgtttcgt agtaaatatt cagcaactgc acggggtcat
     7981 ggtgctcgcc gcccagcgta ttgagatggt cacgcaacgc ctcaacggca ctgtgattaa
     8041 caataaactt taattcgatt tcctgagcca tggcctttac ttatcggtta tgtcacataa
     8101 gtgacgatga acggcgaact taatgcgatc ttttttgtca gtagatagta ttttgcgcca
     8161 aattgccatg caacgggcaa tttgacgggc gtaaaagttt gaagcagtgg caagacctga
     8221 cacagaggat tccgattgat gtcgaatgct ttgcgtagcg acactgatgc cactactatc
     8281 gttccacttt ccatgacaat aacgacagcc tgatgccaaa attacgcctg atcggattaa
     8341 ctttactcgc acttagcgcc actgccgtct cacacgctga agaaacgcgc tatgtttctg
     8401 atgaactgaa tacctgggtc cgtagcggtc cgggagatca ttatcgcctc gtgggcacgg
     8461 ttaacgccgg cgaggaagtg accttattac aaactgacgc caacaccaat tatgcccagg
     8521 tgaaagacag ctctggccgt accgcctgga tcccgttgaa acaacttagc actgagccaa
     8581 gcctgcgctc ccgtgtgcca gatctggaaa atcaggtcaa aaccctgacc gataaactca
     8641 ccaatatcga taacacctgg aatcagcgca ccgcagaaat gcagcaaaaa gtggcgcaga
     8701 gcgacagcgt gatcaacgga ttaaaagaag aaaatcagaa attgaaaaac gagctgattg
     8761 tcgcgcagaa aaaggtcgat gccgccagcg tacagctgga tgacaaacag cgcaccatca
     8821 tcatgcaatg gtttatgtat ggcggtggcg tgctggggct tggcttgctg ctcggtctgg
     8881 tactgccaca cctgatccca acgcgcaaac gcaaagagcg ctggatgaac taaatcgcct
     8941 tcttcgttgc actgtcttat tattaggaat tgtgtatttg acgaagggat gatggcgtga
     9001 agatttatct ggtcggtggt gctgttcggg atgcattgtt agggctaccg gtcaaagaca
     9061 gagattgggt ggtggtcggc agtacgccac aggagatgct cgacgcgggc taccagcagg
     9121 taggccgcga ttttcctgtg tttctgcatc cgcaaacgca tgaagagtat gcgctggcac
     9181 gtaccgaacg gaaatccggt tccggttaca ccggttttac ttgctatgcc gcaccggatg
     9241 tcacgctgga agatgatctt aagcgtcgcg atctgaccat taatgcgctg gcccaggacg
     9301 ataacggcga gattatcgac ccgtacaacg gtctgggcga tctgcaaaat cgtctgttgc
     9361 gccatgtttc ccccgctttt ggcgaagatc cgttacgcgt tctgcgcgtg gcgcgttttg
     9421 ctgcgcgtta tgcccacctc ggttttcgta ttgccgatga aactctgacg ctgatgcgcg
     9481 agatgaccca tgcgggtgaa ctggaacacc tgacgcctga acgggtatgg aaagagacgg
     9541 aaagcgccct caccacccgc aatccccagg tgttcttcca ggtactgcgc gattgcggtg
     9601 cacttcgcgt tttattcccg gaaattgacg ccctgtttgg cgttccggcc cctgccaggt
     9661 ggcatccgga aatcgacacc ggtattcata ccttaatgac gctctcaatg gcggcgatgc
     9721 tgagtccgca ggttgatgtc cgtttcgcaa ctttatgcca cgatctcggt aaaggactga
     9781 cgccgccaga actttggccg cgtcatcatg ggcatggccc ggcgggtgtt aagttagtgg
     9841 aacaactatg ccagcgtctg cgcgtgccaa atgaaattcg cgatttagcc agactggtgg
     9901 ctgagtttca cgatctcatc cacaccttcc caatgctgaa cccaaaaacc atcgtcaaat
     9961 tatttgattc catcgatgcc tggcgtaaac cgcagcgtgt cgagcaactg gcgctgacca
    10021 gcgaggctga cgtacgcggc agaaccggtt ttgaatcagc ggactacccg caaggccgtt
    10081 ggttgcgcga agcctgggaa gtggcgcagt cagtgccgac aaaagcggtc gttgaagcgg
    10141 gatttaaagg tgtggagatt cgcgaggagc tgacccgacg gcggattgcg gcggtagcca
    10201 gttggaagga acaacgttgc ccaaagcctg actgagtata aaactaaacg ttaacacgaa
    10261 ccatcccctc gccccttcgg ggagagggtg aggggaacag accagcaccg gtgcgaacaa
    10321 tcacccccac cccggccctc tccctacaga gcgagggaga aaaccaggcc tgctcccgaa
    10381 ccttttctca atcaaaagaa cacgacgtac accgcagccg ccacaataaa gcgataaatg
    10441 gcgaacggga taaacgaaat gcgcttaatc aattgcagga aggttttaat cgctatcagc
    10501 gccaccacaa aagcggtgat aaacccaacg gcaaacatcg ggatatcgcc ggttgtcagg
    10561 aagccccagc ttttgtagag atcgagcgcc gttgcgccca tcatcatcgg taccgccagc
    10621 aggaacgaga actcggaagc agcgtaacgg ctcacgccca tcagcatccc acctgaaatg
    10681 gtggccccgg aacgggagaa acccggccac agcgccagac actggaaaca gccaatcata
    10741 aacgcctgac gataggtcat atcatcaaga cccggcgcac gcggctcttt cggcttcagg
    10801 cattcggcgg caatcagcaa caaaccgcca acgaccagtg catacatcac atttatcggg
    10861 ttaaacaatg acttaatcgt gtcgtggaac aacagcccca gtaccaccgc cggaatcatc
    10921 cccagcaaaa tgtggatcag cgttaaacga cctttgcttt ctccttcgtg ctgcaacggg
    10981 cggccaaagt ggatgccaat caggccaaac agacgccgcc agaacatcac tactaccgcc
    11041 agaattgatc ctaactggat cacaacttca aaggttttcg ccgtgtcgcc ctcgaacccc
    11101 aacaagtgac cgacaataat catatggccc gtgctggata ccggcagaaa ttctgtcaat
    11161 ccttcgacca cacccaatat tgccgctatc agcagcgagt gcatatcgct catcaataaa
    11221 cccctaaatt attaaaatgt accgcttgtc cggactactg cagtaagacc aggttataac
    11281 cgtttggttt aacagctgta aaattaatta ttttctttca gattattgcc acgctcaatg
    11341 attacaccaa cattcgccgc ccgcgccact gcgcctggct tgctgagttt gatgcgcacc
    11401 cacggcgagt tgaagcgtgc taacagcagc tccgccacct cttcagccac gcgttccacc
    11461 agcgcaaaac gcgccccctc gacgtggctg accaccgttt ctgcaatgtc agcgtaactg
    11521 aggcaatccg ccacatcatc acttttcgcc gctttacggt tatcccatgc catttcgata
    11581 tcgaacacta acttctgttc gatggtctgt tcccagtcgt aaacaccaat agtggtgatt
    11641 accgaaagtt gctctataaa tacaatatcc atcacgtcct gcctgctttt tggctaaccg
    11701 gataccactt ccggcgaaat gtgcgtatta tccacagatt catcgttgaa cacgaatttt
    11761 caaaacggaa cagcttatga gtgcaatcgc gcctggaatg atcctcatcg cgtacctctg
    11821 cggctccatt tccagtgcca ttctggtttg ccgcttgtgt gggctgcccg atccgcgaac
    11881 cagcggctcc ggcaatccag gcgcaaccaa tgtgttacgt atcggtggca agggagcagc
    11941 cgtagcagta ctgattttcg acgttctgaa aggaatgttg cccgtctggg gcgcgtatga
    12001 attaggtgtc agccccttct ggctaggctt aattgccatc gccgcctgtc ttggacacat
    12061 ctggcccgtt ttcttcggat ttaaaggagg aaaaggcgtt gctaccgctt ttggtgccat
    12121 cgcacccatt ggctgggatc tcaccggagt aatggcggga acctggttac tgaccgtgct
    12181 attgagcgga tactcgtcgc tgggagcgat tgtcagtgca ctgattgctc cgttttatgt
    12241 ctggtggttt aagccacaat tcaccttccc agtttcgatg ctctcttgcc tgatcctgct
    12301 gcgtcatcat gacaacatcc agcgtctgtg gcgtcgtcag gagacaaaaa tctggacgaa
    12361 attcaaaaga aagcgcgaaa aggatcccga gtgatttctg gtggatctac atgacctgat
    12421 agccttcatc gggcttgccc agccgttgct ggcaccatgc cgccagaaat tccacgcaga
    12481 cacgtaattt catgctgcga tagagcggct cccggtaaac agcccagata ttggcgcttt
    12541 gtgcatactc cggcaatact tgcaccagtt tgccactctc cagaaacggc aacacatccc
    12601 actcggaacg cagcataatc cctttgccct ccagcgccca ttgcaacact atctcgccgc
    12661 tattggagga aagatgcccg ctaaccttca ccgatttttt ctcctgaccg ttccccaact
    12721 cccatattcc gtgggtcata tcgcgctctt tggtcaccag acagtcatga cgacttaatt
    12781 cctgtaatga ttgtggctgc ggatattttt gcagatactc aggtgctgcg cataatattc
    12841 ttttattttt cgttaacaga tgcgcaatat aataatcagg aatttcgtca ttaatacgaa
    12901 tatccagatc aatattatcc tgcactaaat caatttgccg atcgaacaat tcaaaatgca
    12961 cctgtaactc aggataattg cgcataagtt cggtaatggc tggcgcaata tggctgcgcc
    13021 caaaaccaaa actgcaacca atacgaatca tcccctccgg gcgcgttttg atttgcgtga
    13081 cgtcatcgac cagtcgc
//
LOCUS       DAJVSY010000118        12988 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.118, whole genome shotgun sequence.
ACCESSION   DAJVSY010000118 DAJVSY010000000
VERSION     DAJVSY010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12988)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12988)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12988
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.118"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(14..520)
                     /gene="mug"
                     /locus_tag="OQQ19_003002"
     CDS             complement(14..520)
                     /gene="mug"
                     /locus_tag="OQQ19_003002"
                     /EC_number="3.2.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="G/U mismatch-specific DNA glycosylase"
                     /protein_id="HCS1804546.1"
                     /translation="MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQA
                     GFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQPQ
                     ALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELD
                     QALVVRGR"
     gene            645..720
                     /locus_tag="OQQ19_003003"
     tRNA            645..720
                     /locus_tag="OQQ19_003003"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:678..680,aa:Ile,seq:cat)
     gene            complement(774..1538)
                     /gene="nfeF"
                     /locus_tag="OQQ19_003004"
     CDS             complement(774..1538)
                     /gene="nfeF"
                     /locus_tag="OQQ19_003004"
                     /EC_number="1.16.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent ferric chelate reductase"
                     /protein_id="HCS1804547.1"
                     /translation="MNNSPRYPQRVRNDLRFRELTVLRVERISAGFQRIVLGGEALDG
                     FTSRGFDDHSKLFFPQPDAHFVPPTVTEEGIVWPEGPRPPSRDYTPLYDELRHELAID
                     FFIHDGGGASGWAMQAQPGDKLTVAGPRGSLVVPEDYAYQLYVCDESGMPALRRRLET
                     LSKLAVKPQVSALVSVRDNACQDYLAHLDGFNIEWLAHDEQAVDARLAQMQIPADDYF
                     IWITGEGKVVKNLSRRFEAEQYDPQRVRAAAYWHAK"
     gene            1826..2449
                     /gene="nfeR"
                     /locus_tag="OQQ19_003005"
                     /gene_synonym="yqjI"
     CDS             1826..2449
                     /gene="nfeR"
                     /locus_tag="OQQ19_003005"
                     /gene_synonym="yqjI"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NfeR"
                     /protein_id="HCS1804548.1"
                     /translation="MSHHHEGCCKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCG
                     GRHGRGGGRRQRFFGHGELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVIYP
                     TLDFLQEQSLITIREEEGGKKQIALTEQGAQWLEENREQVEMIEERIKARCVGAALRQ
                     NPQMKRALDNFKAVLDLRVNQSDISDAQIKKIIAVIDRAAFDITQLD"
     gene            complement(2603..4123)
                     /gene="aer"
                     /locus_tag="OQQ19_003006"
     CDS             complement(2603..4123)
                     /gene="aer"
                     /locus_tag="OQQ19_003006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311981.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerotaxis sensor receptor Aer"
                     /protein_id="HCS1804549.1"
                     /translation="MSSHPYVTQQNTPLADDTTLMSTTDLQSYITHANDTFVQVSGFT
                     LQELQGQPHNMVRHPDMPKAAFADMWFTLKKGEPWSGIVKNRRKNGDHYWVRANAVPM
                     VREGKISGYMSIRTRATDEEIAAVEPLYKALNAGRTSKRIHKGLVVRKGWLGKLPSLP
                     LRWRARGVMTLMFILLAAMLWFVAAPVVTYFLCVLVVLLASACFEWQIVRPIENVARQ
                     ALKVATGERNSVEHLNRSDELGLTLRAVGQLGLMCRWLINDVSSQVSSVRNGSETLAK
                     GTDELNEHTQQTVDNVQQTVATMNQMAASVKQNSATASAADKLSIIASNAAVQGGEAM
                     TTVIKTMDDIADSTQRIGTITSLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGE
                     VRHLASRSANAANDIRKLIDASADKVQSGSQQVHAAGRTMEDIVAQVKNVTQLIAQIS
                     HSTLEQADGLSSLTRAVDELNLITQKNAELVEESAQVSAMVKHRASRLEDAVTVLH"
     gene            4540..5919
                     /gene="ygjG"
                     /locus_tag="OQQ19_003007"
     CDS             4540..5919
                     /gene="ygjG"
                     /locus_tag="OQQ19_003007"
                     /EC_number="2.6.1.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417544.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine aminotransferase"
                     /protein_id="HCS1804550.1"
                     /translation="MNRLPSSASALACSAHALNLIEKRTLDHEEMKALNREVIEYFKE
                     HVNPGFLEYRKSVTAGGDYGAVEWQAGSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPV
                     VVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKL
                     AKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAM
                     RTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTG
                     MGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFG
                     GNPLACAAALATINVLLEQNLLAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMA
                     IEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALA
                     AMRVSVEEA"
     gene            complement(5961..6293)
                     /locus_tag="OQQ19_003008"
     CDS             complement(5961..6293)
                     /locus_tag="OQQ19_003008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-binding protein"
                     /protein_id="HCS1804551.1"
                     /translation="METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGEKTLQ
                     TVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERM
                     MPAGVRVV"
     gene            6512..7495
                     /gene="ebgR"
                     /locus_tag="OQQ19_003009"
     CDS             6512..7495
                     /gene="ebgR"
                     /locus_tag="OQQ19_003009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator EbgR"
                     /protein_id="HCS1804552.1"
                     /translation="MATLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEK
                     LEYKTSSARKLQTGAVNQHHILAIYSYQQELEINDPYYLAIRHGIETQCEKLGIELTN
                     CYEHSGLPDIKNVTGILIVGKPTPALRAAACALTDNICFIDFHEPGSGYDAVDIDLAR
                     ISKEIIDFYINQGVNRIGFIGGEDEPGKADIREVAFAEYGRLKQVVREEDIWRGGFSS
                     SSGYELAKQMLAQEDYPKALFVASDSIAIGVLRAIHERGLNIPQDISLISVNDIPTAR
                     FTFPPLSTVRIHSEMMGSQGVNLVYEKARDGRALPLLVFVPSKLKLRGTTR"
     gene            7679..10771
                     /gene="ebgA"
                     /locus_tag="OQQ19_003010"
     CDS             7679..10771
                     /gene="ebgA"
                     /locus_tag="OQQ19_003010"
                     /EC_number="3.2.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase subunit alpha"
                     /protein_id="HCS1804553.1"
                     /translation="MNRWENIQLTHENRLAPRAYFFSYDSVAQARTFARETSSLFLPL
                     SGQWNFHFFDHPLQVPEAFTSELMADWGHITVPAMWQMEGHGKLQYTDEGFPFPIDVP
                     FVPSDNPTGAYQRIFTLSDGWQGKQTLIKFDGVETYFEVYVNGQYVGFSKGSRLTAEF
                     DISAMVKTGDNLLCVRVMQWADSTYVEDQDMWWSAGIFRDVYLVGKHLTHINDFTVRT
                     DFDEAYCDATLSCEVVLENLAASPVVTTLEYTLFDGERVVHSSAIDHLAIEKLTSASF
                     AFTVEQPQQWSAESPYLYHLVMTLKDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYV
                     MLHGVNRHDNDHRKGRAVGMDRVEKDLQLMKQHNINSVRTAHYPNDPRFYELCDIYGL
                     FVMAETDVESHGFANVGDISRITDDPQWEKVYVERIVRHIHAQKNHPSIIIWSLGNES
                     GYGCNIRAMYHAAKALDDTRLVHYEEDRDAEVVDIISTMYTRVPLMNEFGEYPHPKPR
                     IICEYAHAMGNGPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDHGNVWYKFGGD
                     YGDYPNNYNFCLDGLIYSDQTPGPGLKEYKQVIAPVKIHARDLTRGELKVENKLWFTT
                     LDDYTLHAEVRAEGETLATQQIKLRDVAPNSEAPLQITLPQLDAREAFLNITVTKDSR
                     TRYSEAGHSIATYQFPLKENTAQPVPFAPNNARPLTLEDDRLSCTVRGYNFAITFSKM
                     SGKPTSWQVNGESLLTREPKINFFKPMIDNHKQEYEGLWQPNHLQIMQEHLRDFAVEQ
                     SDGEVLIISRTVIAPPVFDFGMRCTYIWRIAADGQVNVALSGERYGDYPHIIPCIGFT
                     MGINGEYDQVAYYGRGPGENYADSQQANIIDIWRSTVDAMFENYPFPQNNGNRQHVRW
                     TALTNRHGNGLLVVPQRPINFSAWHYTQENIHAAQHCNELQRSDDITLNLDHQLLGLG
                     SNSWGSEVLDSWRVWFRDFSYGFTLLPVSGGEATAQSLASYEFGAGFFSTNLHSENKQ
                     "
     gene            10768..11217
                     /locus_tag="OQQ19_003011"
     CDS             10768..11217
                     /locus_tag="OQQ19_003011"
                     /EC_number="3.2.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase subunit beta"
                     /protein_id="HCS1804554.1"
                     /translation="MRIIDNLEQFRQIYASSKKWQRCVEAIENIDNIQPGVAHSIGDS
                     LTYRVETDSATDALFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLK
                     GCGETVEVHEGQIVICDIHEAYRFICNNAVKKVVLKVTIEDGYFHNK"
     gene            11280..12713
                     /locus_tag="OQQ19_003012"
     CDS             11280..12713
                     /locus_tag="OQQ19_003012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1804555.1"
                     /translation="MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFF
                     LATIFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTS
                     LLPRVIAYASYAFLGYEYIMTPVATTIISMVLFAFSTWVSTNGAKMLGPITSVTSTLM
                     LLLTLSYILLAGTALVGGVQPADPITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVY
                     VNDVKGGSKSFVKVIILAGIFIGVLYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAY
                     FGLPEALMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPEGIFGKKTVELNENGVPA
                     RAAWIQFLIVIPLMIIPMLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRAKLD
                     HLPRDFRMGSRRTGIIVVSMLIAIFAVGFVASTFPTGANILTIIFYNVGGIVIFLGFA
                     WWKYSKYIKGLTAEERHIEATPASNVD"
BASE COUNT         3130 a         3489 c         3249 g         3120 t
ORIGIN      
        1 tcggtggcgt tttttatcgc ccacgcacta ccagcgcctg gtccagctcg cgatacgctt
       61 caaccagttt ctctagtgaa acgcgactta aaccgctggg atttggcagc acccaaatct
      121 gcgtcgaacc aatggtgagc gtttgtttcc cccactgtgc accgcgctgg ctgaatccct
      181 gttcatatgc ttgtttgccc agaatcgcca acgcctgcgg ctgataatct tcaatttttt
      241 caatcagctt acgcccacct gcgtgcagct cctgctttga aacttcattg gcttgcaccg
      301 ttggacggtc taccagtttg gtgacgccac aacgataatc cagcagatgc tgtgcctcct
      361 gcggcttcaa ctgacggtcg gtaaacccgg cctgatatat caccttccag aagcgatttg
      421 ctggatgagc aaagggaaaa ccagtcccgg cggatgaaag cccagggttg ataccgcaaa
      481 acacgacccg taaccctgga gccaaaatat cctcaaccat atttactcct ttctaacatc
      541 accaggaaaa gtataacgga ttgaaaatac attgtttata aaaacagcag gcgcacggta
      601 atggctggat tgcgacacgg agttacttta taatccgcta ccatggcccc ttagctcagt
      661 ggttagagca ggcgactcat aatcgcttgg tcgctggttc aagtccagca ggggccacca
      721 gatatagcaa aggctgacga gaaatcgtca gcctttttct ttttatatct cagttacttt
      781 gcgtgccagt aagccgctgc acgtacccgc tgtgggtcat actgttccgc ttcaaagcgg
      841 cggcttaaat tcttaacgac tttaccttcg ccggttatcc agatgaagta atcatcggca
      901 gggatttgca tctgcgccag acgcgcatct accgcctgct catcatgtgc cagccattcg
      961 atattaaaac catcaaggtg cgcgagataa tcctgacagg cgttatcccg cacgctaacc
     1021 agcgcactaa cttgcggttt aacggcaagt ttgctcaacg tttccaggcg gcggcgcagt
     1081 gcgggcattc cggattcatc gcagacatac agctgatacg cgtaatcttc cggcaccacc
     1141 agcgaaccgc gcggaccagc caccgtaagt ttatcgcccg gttgcgcctg catcgcccag
     1201 ccgctggcgc ccccaccgtc gtgaataaag aaatcgatcg ccagttcatg gcgtagttcg
     1261 tcatacagcg gcgtatagtc acgcgacggt gggcgtggtc cttccggcca gacgatgccc
     1321 tcttccgtta ccgttggcgg cacaaagtga gcgtcaggtt gaggaaagaa gagtttgctg
     1381 tgatcgtcaa agccgcgcga tgtaaaaccg tccagcgcct cgccgccgag gacaatgcgc
     1441 tgaaaaccgg cgctgatgcg ctcaacgcgt aacacagtca gttcacggaa gcgcagatca
     1501 ttgcgaacgc gctgcgggta gcggggggag ttattcattg ttatcgcctt cgtgatggta
     1561 atcagatata tctaaataat tttcgtaaat gataatgatt gttaatcatg ataaatgcaa
     1621 gcgattagta gaactgatat gtctatagtc tgataagacg aaccgcctct tctcaggcat
     1681 cattactcaa cgccggatgc ggcgtgaacg ccttatccgg cctacgtgtg agatgagtcc
     1741 acatttaaaa atcattttta ttcttgcaag agtgctcata tcagatataa attagatata
     1801 tctaatcaag aaaaaggagg ctgatatgag ccatcatcac gaagggtgtt gtaaacatga
     1861 aggccagcca cgccatgagg gctgctgcaa aggtgagaag tcagaacacg agcactgcgg
     1921 acacggtcac cagcatgaac acggtcaatg ctgcggtggt cgccacggtc gcggcggcgg
     1981 tcgtcggcaa cgtttctttg gtcacggtga attgcgtctg gtgattctgg atattctctc
     2041 gcgcgatgac agccacggtt acgaattgat taaagcgatt gagaatctaa cccaggggaa
     2101 ttacacccca agcccgggcg tcatctaccc aacgctggat tttctgcagg agcagtcgct
     2161 gattaccatc cgcgaagagg aaggtggtaa gaagcagatt gcgctgaccg aacaaggcgc
     2221 gcagtggctg gaagaaaacc gcgaacaggt ggagatgatt gaagaacgca tcaaagcgcg
     2281 ttgcgttggc gcggcgctgc gccagaaccc gcaaatgaag cgggcgctgg ataattttaa
     2341 agcggtgctg gatttacgcg tcaaccagag cgatatcagt gatgcacaaa taaaaaagat
     2401 cattgcggtg atcgaccgcg ccgcttttga tattacgcaa ctggattaat cgccgcatcc
     2461 gccagtggcg cggtgcaatt gccggatgcg acgcttgacg cgccttatcc ggcctacacc
     2521 cactacacac cccgcaggcc tgataagatg cgccagcatc gcatcaggca ttgtgctcca
     2581 accgccggat ccggcatacc gattaatgca gcaccgtcac cgcgtcttcc agtcggctgg
     2641 cgcggtgttt caccatcgcc gacacctgcg cactctcttc caccagctca gcatttttct
     2701 gggtgatcag gttaagctca tccactgcac gggtcaggct ggaaagccca tcggcctgtt
     2761 ccagcgttga atggctaatc tgggcgatca actgggtgac gtttttcacc tgtgccacaa
     2821 tatcttccat cgtccgtccg gcggcgtgta cctgctgcga accggattgc accttatcag
     2881 cactggcatc aatcagcttg cgaatatcgt tggcagcatt agcgctgcgg ctggctaaat
     2941 gacgcacttc ccctgccacc actgcaaaac ctttgccctg ttcgccggca cgcgccgctt
     3001 ccaccgccgc attcagggcc agaatattgg tctgaaacgc aatatcgtta atcagcgaag
     3061 taatggtgcc aatgcgctgg gtactgtcgg cgatatcgtc cattgtcttg atcaccgtgg
     3121 tcatcgcctc cccaccctgc actgccgcat tactggcgat gatagaaagt ttatcggcag
     3181 ccgacgccgt ggcagagttc tgtttcaccg acgccgccat ttggttcatg gtcgccaccg
     3241 tttgctgaac gttatcaact gtctgctggg tatgttcgtt cagttcatcg gtgcctttcg
     3301 ccagcgtctc actgccattt ctgacactgg acacctggct tgagacatcg ttaattagcc
     3361 aacggcacat caggccaagc tgccctaccg cgcgtaatgt cagccccagc tcatcgctgc
     3421 gattcaggtg ctcaacacta ttacgctctc cggtcgccac cttcagtgcc tgacgggcga
     3481 cattttctat cgggcgcaca atctgccatt caaaacaagc gcttgccaac aataccacta
     3541 acacacagag gaaatacgtc accaccgggg cagcaacaaa ccaaagcatg gccgccagca
     3601 agataaacat cagggtcatc actccacgcg cccgccagcg aagcggtaat gaaggcagtt
     3661 tacccagcca gcctttacgc accaccaggc ctttatgaat acgcttactg gtacgtccgg
     3721 cgttcagcgc tttgtacagc ggctccaccg ccgcaatctc ttcatccgtc gcccgggtac
     3781 gaatcgacat atagccactg atttttccct cgcgcaccat cggtaccgca ttggcccgca
     3841 cccaataatg gtcgccattt ttgcggcgat ttttcacgat gccgctccag ggctcccctt
     3901 ttttcagggt gaaccacata tccgcaaacg ccgcttttgg catatccggg tgacgcacca
     3961 tgttgtgcgg ctgcccttgt aactcttgca aggtaaagcc gctcacctgc acaaaagtgt
     4021 cattagcatg agtgatatag ctttgcagat cggtagtgga catcagagtg gtatcgtccg
     4081 ccagcggggt attttgctgg gtgacatacg gatgagaaga catgttcgcg tcctatgcag
     4141 gttatatggt tgttaacttc ttgtcagagt ttatgtcggc cccgctgcgg ttatctttaa
     4201 ccgattaatt tgatttagat cgcaatttgc gattaaagca caaatctaat tccttgattt
     4261 aaaatacttt cactctgtta ctatacgaaa acgttaatta tcttgcccaa aatcaggcaa
     4321 ttatcgccct gaaaacgtgc atttgcacag caatcatcaa atccataccc gacaaaaacc
     4381 gtgcaaaata acaacgaatg ttaacaaata gcattaaata ctgcgcaaat gataaccaca
     4441 tttgtgttta tcccgatttt cgcgatcgca gccggagtgg cgcaatccct gcaatactta
     4501 aatcggtatc atgtgatacg cgagcctccg gagcatattt tgaacaggtt accttcgagc
     4561 gcatcggctt tagcgtgcag cgcccacgcc ctgaatctca ttgagaagcg aacgctggat
     4621 catgaggaga tgaaagcact taaccgagag gtgattgaat acttcaaaga gcatgtcaat
     4681 ccggggtttt tagagtatcg caaatctgtt accgccggcg gggattacgg agccgtagag
     4741 tggcaagcgg gaagtttaaa tacgcttgtc gacacccagg gacaggagtt tatcgactgc
     4801 ctgggaggtt ttggaatttt caacgtgggg caccgtaatc cagttgtggt ttccgccgta
     4861 cagaatcaac ttgcgaaaca accgctgcac agccaggagc tgctcgatcc gttacgggcg
     4921 atgttggcga aaacccttgc tgcgctaacg cccggtaaac tgaaatacag cttcttctgt
     4981 aatagcggca ccgagtccgt tgaagcagcg ctgaagctgg cgaaagctta ccagtcaccg
     5041 cgcggcaagt ttacttttat tgccaccagc ggcgcgttcc acggtaaatc acttggcgcg
     5101 ctgtcggcca cggcgaaatc gaccttccgc aaaccgttta tgccgttact gccgggcttc
     5161 cgtcatgtgc cgtttggcaa tatcgaagcc atgcgcacgg ctcttaacga gtgcaaaaaa
     5221 accggtgatg atgtggctgc ggtgatcctc gaaccgattc agggtgaagg tggcgtaatt
     5281 ctgccgccgc cgggctatct caccgccgta cgtaagctat gcgatgagtt cggcgcactg
     5341 atgatcctcg atgaagtaca aacgggcatg gggcgcacgg gcaagatgtt cgcctgcgag
     5401 catgagaacg tacagccgga tatcctctgc cttgccaaag cgctcggcgg cggcgtgatg
     5461 ccgattggcg cgaccatcgc cactgaagag gtgttttcag ttctgttcga caacccattc
     5521 ctgcatacca ccacctttgg cggcaacccg ctggcctgtg cggcggcgct ggcgaccatc
     5581 aatgtgttgc tggagcagaa cttactggct caggctgagc aaaaaggcga tatgttgctg
     5641 gacggtttcc gtcaactggc gcgggaatat cccgatctgg tacaggaagc gcgtggtaaa
     5701 gggatgttga tggcaattga gtttgttgat aacgaaatcg gctataactt tgccagcgag
     5761 atgttccgcc agcgcgtact ggtggccgga acgctcaata acgccaaaac gatccgcatt
     5821 gaaccgccac tgacactgac cattgaacag tgtgaactgg tgatcaaagc ggcgcgtaag
     5881 gcgctggcgg ccatgcgagt aagtgtcgaa gaagcgtaat atcaaatcgg atggcgatac
     5941 gacgtcgcca tccgatcttt ttatacgacg cgtacgcccg caggcatcat ccgctccggc
     6001 gttaacaaca cgctttcact gccgtcatcg gtttccgcac acaacagcat gcattccgac
     6061 gtttcaccac gcattttcgc tttttgcaga ttgcataaga ccaccaccgt tttccccatc
     6121 agctcttctt cgctgtagta cggcaccagg ctggtcacgg tttgcagtgt tttttccccc
     6181 acatcaacct gtacgatgta cagcttgtcg gcgttttcat ggcgtttcac ttccacaatc
     6241 tttccgacgc gcatttccag acgtgcaaaa tcagcgtaag ccacggtttc cattgtttcc
     6301 ttccttcggg taaaatttta ctaaactata gcaaaagttt ttctcaatcc tgtaggctaa
     6361 aaatggagaa tgcaggcgtg atcacattcg tgagccgctg tgttaccgtt acagcgtcaa
     6421 agaaacgcgc tttatttact gaaaacaggt gacccgataa gtacttcctc tacaatgggg
     6481 gcgcacatca gggaaagtaa aaaaggtaaa catggcaaca ctaaaagaca tcgcaatcga
     6541 agctggcgta tccctggcga cagtatccag ggtcttaaat gacgatccga cattgaatgt
     6601 gaaagaagag acgaaacatc gcattctcga gatcgccgaa aagctggagt acaagaccag
     6661 tagtgcccgc aaactccaga caggtgcagt caaccaacac catattctgg ctatctacag
     6721 ctaccaacag gagctggaga tcaacgatcc ttactatctg gcgatccgcc acggcattga
     6781 aactcagtgc gaaaagctgg gcattgagct caccaactgt tatgaacaca gcggattacc
     6841 agacattaaa aacgtcaccg gtattttaat tgtcggcaaa cccacgcccg cccttcgcgc
     6901 cgccgcctgt gcgttgaccg acaatatctg ttttatcgac tttcacgaac ccggcagcgg
     6961 ttacgatgcg gtggatatcg atctggcacg catcagtaaa gaaatcatcg acttctatat
     7021 caatcagggc gttaatcgta ttggttttat tggcggtgaa gatgagccag gcaaagcgga
     7081 tattcgtgag gtcgcctttg cggaatatgg ccgactgaaa caagtggtac gcgaagagga
     7141 tatctggcgc ggaggctttt ccagttcgtc gggttatgaa ctggcaaaac agatgctggc
     7201 gcaggaagac tatccgaagg cactgtttgt tgcttccgat tccattgcta tcggcgtact
     7261 gcgggcaatt catgaacgag gcctgaacat cccacaggat atttcgctta tcagcgttaa
     7321 cgatatcccc accgcgcgat ttacctttcc gccgctctcc accgtgcgca tccattccga
     7381 gatgatggga agtcagggcg ttaacctggt gtatgaaaaa gcccgcgatg gtcgcgcgct
     7441 gccgctgtta gtcttcgttc ccagcaaatt aaaactgcgc ggcacgaccc gttaaatccc
     7501 cttacacact gtccggcaat cgtttttgcc ggacagtgct gccgtttatt ttcgtgatcc
     7561 agttaaagta aatgcattta tctgctactt tttagtaaaa attttactaa actccccagc
     7621 aattacacaa actaccatca ccatgaatgg ttccgatttc tctctaccgg gaggccctat
     7681 gaatcgctgg gaaaacattc agctcaccca cgaaaaccga cttgcgccgc gtgcgtactt
     7741 tttttcatat gattctgttg cgcaagcgcg tacctttgcc cgcgaaacca gcagcctgtt
     7801 tctgccctta agcggtcagt ggaatttcca cttttttgac catccgctgc aagtaccaga
     7861 agccttcacc tctgagttaa tggctgactg ggggcatatt accgtccccg ccatgtggca
     7921 aatggaaggt cacggcaaac tgcaatatac cgacgaaggt tttccgttcc ccatcgatgt
     7981 gccgtttgtc cccagcgata acccaaccgg tgcctatcaa cgtattttca ccctcagcga
     8041 cggctggcag ggtaaacaga cgctgattaa atttgacggc gtcgaaacct attttgaagt
     8101 ctatgttaac ggtcagtatg tgggtttcag caagggcagt cgcctgaccg cagagtttga
     8161 catcagcgcg atggttaaaa ccggcgacaa cctgttgtgt gtgcgcgtga tgcagtgggc
     8221 ggactctacc tacgtggaag accaggatat gtggtggtca gcggggatct tccgcgatgt
     8281 ttatctggtc ggaaaacacc taacgcatat taacgatttc actgtgcgta ccgactttga
     8341 cgaagcctat tgcgatgcca cgctttcctg cgaagtggtg ctggaaaatc tcgccgcctc
     8401 ccctgtcgtc acgacgctgg aatataccct gtttgatggc gaacgcgtgg tgcacagcag
     8461 cgccattgat catttggcaa ttgaaaaact gaccagcgcc agctttgctt ttactgtcga
     8521 acagccgcag caatggtcag cagaatcccc ttatctttac catctggtca tgacgctgaa
     8581 agacgccaac ggcaacgttc tggaagtggt gccacaacgc gttggcttcc gtgatatcaa
     8641 agtgcgcgac ggtctgttct ggatcaataa ccgttatgtg atgctgcacg gcgtcaaccg
     8701 tcacgacaac gatcatcgca aaggccgcgc cgttggaatg gatcgcgtcg agaaagatct
     8761 ccagttgatg aagcagcaca atatcaactc cgtgcgtacc gctcactacc cgaacgatcc
     8821 gcgtttttac gaactgtgtg atatctacgg cctgtttgtg atggcggaaa ccgacgtcga
     8881 atcgcacggc tttgctaatg tcggcgatat cagccgtatt accgacgatc cgcagtggga
     8941 aaaagtctac gtcgagcgca ttgttcgcca tatccacgcg cagaaaaacc atccgtcgat
     9001 catcatctgg tcgctgggca atgaatccgg ctatggctgt aacatccgcg cgatgtacca
     9061 tgcggcgaaa gcgctggatg acacgcgact ggtgcattac gaagaagatc gcgatgctga
     9121 agtggtcgat attatttcca ccatgtacac ccgcgtgccg ctgatgaatg agtttggtga
     9181 atacccgcat ccgaagccgc gcatcatctg tgaatatgct catgcgatgg ggaacggacc
     9241 gggcgggctg acggagtacc agaacgtctt ctataagcac gattgcattc agggtcatta
     9301 tgtctgggag tggtgcgacc acgggatcca ggcacaggac gaccacggca atgtctggta
     9361 taaattcggc ggcgactacg gcgactatcc caacaactat aacttctgtc ttgatggttt
     9421 gatctattcc gatcagacgc cgggaccggg cctgaaagag tacaaacagg ttatcgcgcc
     9481 ggtaaaaatc cacgcgcggg atctgactcg cggcgagttg aaagtcgaaa ataaactgtg
     9541 gtttaccacg cttgatgact acaccctgca cgcagaggtg cgcgccgaag gtgaaacgct
     9601 cgcgacgcag cagattaaac tgcgcgacgt tgcgccgaac agcgaagccc ccttgcagat
     9661 cacgctgccg cagctggacg cccgcgaagc gttcctcaac attacggtga ccaaagattc
     9721 ccgcacccgc tacagcgaag ccgggcattc tatcgccact tatcagttcc cgctgaagga
     9781 aaacaccgcg cagccagtgc ctttcgcacc aaataatgcg cgtccgctga cgctggaaga
     9841 cgatcgtttg agctgcaccg ttcgcggcta caacttcgcg atcaccttct caaaaatgag
     9901 tggcaaaccg acatcctggc aggtaaatgg cgagtcgctg ctgacccgcg agccaaagat
     9961 caacttcttc aagccgatga tcgacaacca caagcaggag tacgaagggt tgtggcagcc
    10021 gaatcatttg cagatcatgc aggaacatct gcgcgacttt gccgtagaac agagcgatgg
    10081 tgaagtgttg atcatcagcc gcacagttat tgcaccgccg gtgtttgact tcgggatgcg
    10141 ctgtacctac atctggcgca tcgctgccga tggccaggtt aacgtggcgc tttccggcga
    10201 gcgttacggc gactatccgc acatcattcc gtgcatcggt ttcaccatgg ggattaacgg
    10261 cgaatacgat caggtggcgt attacggtcg tggaccgggc gaaaactacg ccgacagcca
    10321 gcaggctaac atcatcgata tctggcgcag caccgtcgat gccatgttcg agaactatcc
    10381 cttcccgcag aacaacggca accgtcagca tgtccgctgg acggcactga ctaaccgcca
    10441 cggcaacggt ctgctggtgg ttccgcagcg cccaattaac ttcagcgcct ggcactatac
    10501 ccaggaaaac atccacgctg cccagcactg taacgagctg cagcgcagtg atgacatcac
    10561 cctgaacctc gaccaccagc tacttggcct cggctccaac tcctggggca gcgaggtgct
    10621 ggactcctgg cgcgtctggt tccgtgactt cagctacggc tttacgttgc tgccggtttc
    10681 tggcggagaa gctaccgcgc aaagtctggc gtcgtatgag ttcggcgcag ggttcttttc
    10741 cacgaatttg cacagcgaga ataagcaatg aggatcatcg ataacttaga acagttccgc
    10801 cagatttacg cctctagcaa gaagtggcaa cgctgcgttg aagcgattga aaatatcgac
    10861 aacattcagc ctggcgtcgc ccactccatc ggtgactcat tgacttaccg cgtggagaca
    10921 gactccgcga ccgatgcgct atttaccggg catcgacgct attttgaagt gcattactac
    10981 ctgcaagggc agcaaaaaat tgaatatgcg ccgaaagaga cattacaggt agtggaatat
    11041 tatcgtgatg aaactgaccg tgaatattta aaaggctgcg gagaaaccgt tgaggtccac
    11101 gaagggcaaa tcgttatttg cgatatccat gaagcgtatc ggtttatctg caataacgcg
    11161 gtcaaaaaag tggttctcaa agtcaccatc gaagatggtt atttccataa caaataacaa
    11221 ctacggcggc aaaaggagtt tgccgccacc gctaccctac acattttcgg agatgtgtta
    11281 tgtctgatac caaacgtaat acaatcggca aattcggctt gctctcgctg acttttgctg
    11341 ccgtttacag ctttaacaac gttatcaata ataatattga gcttggactg gcctcggcac
    11401 cgatgttttt cctcgcgacg attttttatt ttattccctt ctgtctgatc atcgcagaat
    11461 ttgtttcgtt aaataaaaac tcagaagccg gtgtctacgc gtgggtaaaa agttcgctgg
    11521 gcggacgttg ggcatttatt actgcctata cctactggtt cgtaaacctg ttctttttca
    11581 cctcactgtt gccgcgcgtt attgcttatg cttcgtatgc cttcctcgga tacgaatata
    11641 ttatgacgcc ggttgccacc accattatca gtatggtgct gttcgccttc tccacctggg
    11701 tttccaccaa cggggcgaaa atgttggggc caattacctc cgtcacttca acgctgatgc
    11761 tgctgttaac gctctcctac attttactgg caggtacggc gctggttggc ggcgtacagc
    11821 ctgctgaccc catcaccgtt gacgcgatga tcccgaactt caactgggcg ttcctcggcg
    11881 ttaccacctg gatctttatg gccgcaggtg gcgcggagtc cgtcgctgtg tacgttaacg
    11941 acgtcaaagg cggttcgaaa tcgttcgtta aagtgatcat cctcgccggg atttttatcg
    12001 gcgtactgta ttccgtctcc tcggtgctga ttaacgtctt cgtcagcagc aaagagttga
    12061 aatttaccgg cggatcggtg caggtattcc atggcatggc ggcgtatttt ggtctaccgg
    12121 aagcgttgat gaatcgcttt gtcggtctgg tgtcctttac cgcgatgttc ggttccctgc
    12181 tgatgtggac cgcaacgccg gtgaaaattt tcttctccga aatcccggaa ggcatctttg
    12241 gtaagaaaac cgtcgaactg aacgaaaacg gcgttccggc gcgcgcagcg tggatccagt
    12301 tcctgatcgt catcccgctg atgattatcc cgatgctcgg ttccaatacc gtgcaggatc
    12361 tgatgaatac tattattaat atgaccgccg cagcgtccat gcttccgccg ttattcatca
    12421 tgctggctta cctgaattta cgcgccaaat tagatcacct gccacgcgat ttccgtatgg
    12481 gctcccgccg caccggtatt atcgttgttt caatgctgat tgcgatattt gccgtagggt
    12541 ttgtcgcttc gacattcccg actggcgcga atattctgac catcattttt tataacgtcg
    12601 gcggtattgt tatcttcctt ggctttgcgt ggtggaaata cagtaaatat ataaagggat
    12661 taacggctga agagcgccat attgaagcga cgccagccag caatgttgat taagcagaat
    12721 aataaaaaat gagcaggcat tttccctctt cctggatgag gagagggaaa atagtttctg
    12781 cctttatatt tttataatta caacgataaa aggctgtact ttttctttag ctcatggatt
    12841 aacacaatga aattaatcac tgcaccatgc agagcattac ttgctctgcc gttttgctac
    12901 gccttttctg cggcaggaga agaagcacgt ccggcagaac atgacgacac aaaaacaccc
    12961 gcaattacct cgacatcttc tccttcat
//
LOCUS       DAJVSY010000119        12952 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.119, whole genome shotgun sequence.
ACCESSION   DAJVSY010000119 DAJVSY010000000
VERSION     DAJVSY010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12952)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12952)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12952
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.119"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(234..1574)
                     /gene="fadL"
                     /locus_tag="OQQ19_003013"
     CDS             complement(234..1574)
                     /gene="fadL"
                     /locus_tag="OQQ19_003013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708225.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid transporter FadL"
                     /protein_id="HCS1804556.1"
                     /translation="MSQKTLFTKSALAVAVALISTQAWSAGFQLNEFSSSGLGRAYSG
                     EGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTA
                     WVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYR
                     LNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTPQGQALAATANGIDS
                     NTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYG
                     LPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATST
                     SGNTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRF
                     WLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF"
     gene            1946..2230
                     /locus_tag="OQQ19_003014"
     CDS             1946..2230
                     /locus_tag="OQQ19_003014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HCS1804557.1"
                     /translation="MSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTL
                     AALTEKARSVESEPCKISPTFTEESDGVRLDIDFTFACEAEMLIFQLGLR"
     gene            2410..3720
                     /gene="fadI"
                     /locus_tag="OQQ19_003015"
     CDS             2410..3720
                     /gene="fadI"
                     /locus_tag="OQQ19_003015"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase FadI"
                     /protein_id="HCS1804558.1"
                     /translation="MGQVLPLVTRQGDRIAIVSGLRTPFARQATAFHGIPAVDLGKMV
                     VGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATS
                     FQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLF
                     SRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWS
                     DGKLKEEVMTAFIPPYKQPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANSTPLT
                     DGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLFGPAWSTPLALERAGLTM
                     SDLTLIDMHEAFAAQTLANIQLLGSERFACEVLGRAHATGEVDDSKFNVLGGSIAYGH
                     PFAATGAWMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLEAE"
     gene            3720..5864
                     /gene="fadJ"
                     /locus_tag="OQQ19_003016"
     CDS             3720..5864
                     /gene="fadJ"
                     /locus_tag="OQQ19_003016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid oxidation complex subunit alpha FadJ"
                     /protein_id="HCS1804559.1"
                     /translation="MEMASAFTLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIK
                     QLRENKELRGVVFISAKPDNFIAGADINMIGNCKTVQEAEALARQGQQLMAEIHALPI
                     PVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIG
                     VSTTLEMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKDRPSSRPLPVRERI
                     LAGPLGRALLFKMVGKKTEHKTQGNYPATERILEVVETGLAQGTSSGYDAEARAFGEL
                     AMTPQSQALRSIFFASTDVKKDPGSDAPPAPLNSVGILGGGLMGGGIAYVTACKAGLP
                     VRIKDINPQGINHALKYSWDQLEGKVRRRHLKASERDKQLALISGTTDYRGFAHRDLI
                     IEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFSP
                     VEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIR
                     MLTKGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGERFSAPANVV
                     SSILNDDRKGRKNGRGFYLYGQKGRKSKKQVDPAIYPLIGAQGQGRLSAPQVSERCVM
                     LMLNEAVRCVDEQVIRSVRDGDIGAVFGIGFPPFLGGPFRYIDSLGAGEVVAIMQRLA
                     TQYGSRFTPCERLVEMGARGESFWKTTATDLQ"
     gene            6067..6552
                     /gene="sixA"
                     /locus_tag="OQQ19_003017"
     CDS             6067..6552
                     /gene="sixA"
                     /locus_tag="OQQ19_003017"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HCS1804560.1"
                     /translation="MQVFIMRHGDAALDAASDSVRPLTTNGCDESRLMANWLKGQKVE
                     IERVLVSPFLRAEQTLEEVGDCLNLPSSAEVLPELTPCGDVGLVSAYLQALTNEGVAS
                     VLVISHLPLVGYLVAELCPGETPPMFTTSAIASVTLDESGNGTFNWQMSPCNLKMAKA
                     I"
     gene            7227..7487
                     /locus_tag="OQQ19_003018"
     CDS             7227..7487
                     /locus_tag="OQQ19_003018"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS1804561.1"
                     /translation="MSKFVKTAIAAAMVMGVFTSTATIAAGNNGTARFYGTIEDSVCS
                     IVPDDHKLEVDMGDIGAEKLKNNGTTTPKSFQIRLQDCVFDT"
     gene            7494..7790
                     /locus_tag="OQQ19_003019"
     CDS             7494..7790
                     /locus_tag="OQQ19_003019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1804562.1"
                     /translation="MTTTFTGTVSSANSGNYYTIFNTDTGAAFNNVSLAIGDSLGTSY
                     KSGMGIDQKIVKDTSTNKGKAKQTLNFKAWLVGAADAPDLGNFEANTTFQITYL"
     gene            7872..10514
                     /gene="yfcU"
                     /locus_tag="OQQ19_003020"
     CDS             7872..10514
                     /gene="yfcU"
                     /locus_tag="OQQ19_003020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001112832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial usher protein YfcU"
                     /protein_id="HCS1804563.1"
                     /translation="MPDHSLFRLRILPWCIALAMSGSYSSVWAEDDIQFDSRFLELKG
                     DTKIDLKRFSSQGYVEPGKYNLQVQLNKQPLAEEYDIYWYAGEDDASKSYACLTPELV
                     AQFGLKEDVAKNLQWSHDAKCLKSGQLEGMEIKADLSQSALVISLPQAYLEYTYPDWD
                     PPSRWDDGISGIVADYSINAQTRHEENGGDDSNEISGNGTVGVNLGPWRMRADWQTNY
                     QHTRSNDDDEFSGDETQKKWEWSRYYAWRALPSLKAKLALGEDYLRSDIFDGFNYVGG
                     SVSTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQMGRVIYETQVPAGPFRIQDLGDSV
                     SGTLHIRIEEQNGQVQEYDISTASMPYLTRPGQIRYKIMMGRPQEWGHHVEGEFFSGA
                     EASWGIANGWSLYGGALGDENYQSAALGVGRDLSTFGAVAFDVTHSHTKLDKDTAYGK
                     GSLDGNSFRVSYSKDFDQLNSRVTFAGYRFSEENFMTMSEYLDASDSGMVRTGNDKEM
                     YTATYNQNFRDAGVSVYLNYTRHTYWDREEQINYNIMLSHYFNMGSIRNVSISMTGYR
                     YEYDNQADKGMYISLSMPWGDNSTVSYNGNYGSGTDSSQVGYFSRVDDATHYQLNVGT
                     SDKHTSVDGYYSHDGSLAQVDLSANYHEGQYTSAGLSLQGGATLTAHGGALHRTQNMG
                     GTRLLIDADGVADVPVEGNGAAVYTNMFGKAVVSDVNNYYRNQAYIDLNRLPENAEAT
                     QSVVQATLTEGAIGYRKFAVISGQKAMAVLRLSDGSHPPFGAEVKNDNEQTVGLVDDD
                     GNVYLAGVKPGEHMSVFWSGVAHCDINLPDPLPADLFNGLLLPCQHKGNVAPITSPAV
                     KPAIQEQTQRVTPTEPPTSISVNQ"
     gene            10534..11286
                     /locus_tag="OQQ19_003021"
     CDS             10534..11286
                     /locus_tag="OQQ19_003021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
                     /protein_id="HCS1804564.1"
                     /translation="MFNLTNTAKIVVPALALLATAVSFSSHTSVTPDRTRLVFNESDK
                     SISVTLRNNDPTLPYLAQSWIEDAKGNKISSPLAVLPPVQRIDAMMNGQVKVQGLPDI
                     NKLPADRESVFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALENTSMKSPWQHKV
                     TLIRNGQDFTVNNPTPYYVIISNASAKKGGNPPAGFTPLMMEPKTSAPLNAKMDSVPV
                     LTYINDYGARMPLYFKCTGNSCQVDEEQSRKG"
     gene            11302..11811
                     /locus_tag="OQQ19_003022"
     CDS             11302..11811
                     /locus_tag="OQQ19_003022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001733155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1804565.1"
                     /translation="MSHKFVAGAGLLVLAGWGISGLAVAGSDIKQVDLTLRILVDGPP
                     PCSVKGSAVKFGNVIINRIDGTNYQQDAKYTLNCGNKVSDDLRMQLKGNTAVINGETV
                     LSTDIAGLGVRIENAADNSLFAVGENNWTPFNVNTQPQLKAVPVKQSGVQLTPSEFNA
                     TMTMVVDYQ"
     gene            11808..12296
                     /locus_tag="OQQ19_003023"
     CDS             11808..12296
                     /locus_tag="OQQ19_003023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001709066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1804566.1"
                     /translation="MKKFLLLLLCAGCGAVLAAEDDITFDGTLMSPPACSISGGQTIE
                     VQFRDLIIDSIDGNYGRQKVDYELSCDSDVRDPEWNMTLSWTGTATSYNDSAIETDVP
                     GFGIELQHDGQRFKLNEPLSINATDFSQKPKLEAVPVKAADAVLTDTTFSAYATLRVD
                     YQ"
     gene            12293..12832
                     /locus_tag="OQQ19_003024"
                     /pseudo
     CDS             12293..12832
                     /locus_tag="OQQ19_003024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416836.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
BASE COUNT         3262 a         3087 c         3438 g         3165 t
ORIGIN      
        1 gtatcctgga aatgcagaaa agtaaactct ttgagaagga cgagcagaac gcctgaaaat
       61 atgcctttcc cttcaggttt gtctgtggat accgcttatt gatttgaaag ggcaagctgc
      121 caacaggctg tttgcaaaac tcaggaggta agcaatgagg acactacttt cggtgaagtg
      181 ggggagttaa agtcacctgc tatgcaggtg actttatcca ggcgaacgcg ttatcagaac
      241 gcgtagttaa agttagtacc gaacagccag gctttacctt cagactcgaa ctggtatggg
      301 ccttcgttaa ttttcacgct ctgaccgtgc atataagaaa caccaacgtc gactgaagca
      361 tctttattaa atgcgtaagt cgtacctgca ctcagccaga aacggtcctg gtccggaatg
      421 gagatagaac gattctgagc cggaactggg ctgtcatcaa aggcgatacc ggtacggaag
      481 gtccagttat catcgtagta ataagtggta cccaacgcga tgcggtaagc atctttaaag
      541 ccttcatgtt tctggaacag cgtgttgcca ctggttgagg tcgctttcag ctgctggaac
      601 tgactccagc tggtgtaagc caggctatag tgaatcgccc actgtggatc aacacggtta
      661 taacctgaca cttcccacat ttcaggcagg ttcagcgtca gataacccga ttgcgttgcg
      721 ccacctgtcg cggtaggaat tggcaaaccg tagttattaa acgcacgatt aagatcgctg
      781 ctgtagttac ctttgaagtc aattttcact tcagaacggt aggtcagtgc atagcggtta
      841 tttttatcca gttcatacag gattccggcg ttccagccaa agccccactg gttaccgttc
      901 agatgagcga ttttggtatt actgtcgata ccgttggcgg tagctgccaa tgcttgccct
      961 tgaggagttt gcccggcagg agattgcata atctgaccag caaccaactg ccccagatcg
     1021 cctgcgaaac gttcaatttt cgcgcgagcg tagacggcgt tgaaaccaag accaaagctc
     1081 catgcattat ttaagcgata cgcaccgctt aagttcaggt tcatggtttc aaggtcagtt
     1141 gtacccccga cagagccgcc tgcataagta tcattaaact ctgttgccag accatagtta
     1201 gaggtaatag aagcgcccca accaaattgg tcgttaatcg gtgcaacaaa gtgcatgttc
     1261 ggaacccatg ccgtaggcgc gatgttatcg gctttcaggc tacgaccaga cggagacgtt
     1321 ccgctgatat tcacatccgg gtcaatataa accgcacccg cagaaaatgt cgggcggtca
     1381 aacatggtaa tcaatgcggg gttacggcta acgttacctg catcatcggc aattgcgcct
     1441 tcccctgaat aagcccggcc caggccagag gaagaaaatt cgtttaactg aaagcctgcc
     1501 gaccaggcct gggtggagat aagtgccact gcgactgcga gagcagactt tgtaaacagg
     1561 gttttctggc tcatgaccat aacctcaatg atttattttt atacaaacta tgttacgtgc
     1621 tgtaacagga gcgcgaagtg tagggtctga ggtacatctt agaaatcaga ccagtggcga
     1681 gagtataggt cggaccagct ggaatgttgc aagtatgttt ccatcttttt tcaaatatga
     1741 tctaagaaac gcgatccagc tggcaaaatt tggaggttgc gcactcgcgg attcgggtga
     1801 attttgtttt agatcatttt taagtgtgat ttcggtcact tatccgattt tgcagaatta
     1861 acaactggag cagcactttc cggaagcgta aaatatccac aacgtttatc tggcaccttg
     1921 ggtgcacata cagaggaaat caacgatgag taaatgtagt gctgatgaaa ccccggtttg
     1981 ctgctgtatg gatgttggca ccattatgga caactccgac tgcaccgcgt cttacagccg
     2041 cgtgtttgca aaccgcgcag aagcagaaca aacgctggcg gcgttgactg aaaaagcccg
     2101 tagcgtggaa tccgaaccgt gcaaaatctc cccgactttc actgaagagt ctgacggtgt
     2161 gcgcctggat atcgatttca cttttgcctg cgaagctgaa atgctgatct tccagctggg
     2221 tctgcgttaa ttcctctcgg gtacgttcgc ccctgtcagt tgctggcagg ggcgttttct
     2281 tttctttctc ctgtcttcac tgtgtcatag ctcccacttt cctttttctc cgcttggcta
     2341 aatgtaaaaa aatggttaag actataatca ggtcagacca ctttatttat ttttttacag
     2401 gggagtgtta tgggtcaggt tttaccgctg gttacccgcc agggcgatcg tatcgccatt
     2461 gttagcggtt tacgtacgcc ttttgcccgc caggcgacgg cttttcatgg cattcccgcg
     2521 gttgatttag ggaagatggt ggtaggcgaa ctgctggcac gcagcgagat ccccgctgaa
     2581 gtgattgaac agctggtctt tggtcaggtc gtacaaatgc ctgaagcccc caacattgcg
     2641 cgtgaaattg ttctcggtac cggaatgaat gtgcataccg atgcttacag cgtcagccgc
     2701 gcttgcgcta ccagtttcca ggcggttgca aacgtcgcag aaagcctgat ggcgggaact
     2761 atccgagcgg ggattgccgg tggggcagat tcctcttccg tattgccaat tggcgtcagt
     2821 aaaaaactgg cgcgcgtgct ggttgatgtc aacaaagctc gaaccatgag ccagcgcctg
     2881 aaactcttct ctcgcctgcg tttgcgcgat ttaatgcccg taccgcctgc agtagcagaa
     2941 tattctaccg gcttgcggat gggtgacacc gcagagcaaa tggcgaaaac ctacggcatc
     3001 acccgagaac agcaagatgc attagcgcac cgttcgcatc agcgtgccgc tcaggcatgg
     3061 tcagacggaa aactcaaaga agaggtgatg actgccttta tccctcctta taaacaaccg
     3121 cttgtcgaag acaacaatat tcgcggtaat tcctcgcttg ccgattacgc aaagctgcgc
     3181 ccggcgtttg atcgcaaaca cggaacggta acggcggcaa acagtacgcc gctgaccgat
     3241 ggcgcggcag cggtgatcct gatgactgaa tcccgggcga aagaattagg gctggtgccg
     3301 ctggggtatc tgcgcagcta cgcatttact gcgattgatg tctggcagga catgttgttc
     3361 ggtccggcct ggtcaacacc gctggcgctg gaacgtgccg gtttgacaat gagcgatctg
     3421 acattgatcg atatgcacga agcctttgca gctcagacac tggcgaatat tcagttgctg
     3481 ggtagtgaac gttttgcttg tgaagtactg gggcgtgcac atgccactgg cgaagtggac
     3541 gatagcaaat ttaacgtgct tggcggttcg attgcttacg ggcatccctt cgcggcgacc
     3601 ggcgcgtgga tgattaccca gacattgcat gaacttcgcc gtcgcggcgg tggatttggt
     3661 ttagttaccg cctgtgctgc cggtgggctt ggcgcggcaa tggttctgga ggcggaataa
     3721 tggaaatggc atcagcgttt actcttaatg ttcgtctgga caacattgct atcatcacca
     3781 tcgacgtacc ggatgagaaa atgaataccc tgaaggcgga atttgcctcg caggtgcgcg
     3841 ccattattaa gcaactccgt gaaaacaaag agttgcgcgg cgtggtgttt atctccgcga
     3901 aaccggacaa ttttatcgcc ggagcagaca tcaacatgat cggcaactgc aaaacggtgc
     3961 aagaagcgga agctctggcg cggcagggcc aacagttgat ggcggagatt catgctttgc
     4021 ccattccggt tatcgcggct attcatggcg cttgcctggg tggtgggctg gagttggcgc
     4081 tggcgtgcca cggtcgcgtt tgtactgacg atcctaaaac ggtgctcggt ttgcctgaag
     4141 tacaacttgg attgttaccc ggttcaggcg gcacccagcg tttaccgcgt ctgataggcg
     4201 tcagcacaac attagagatg atcctcaccg gaaaacaact tcgggcgaaa caggcattaa
     4261 agctggggct ggtggatgac gttgttccgc actccatttt gctggaagtc gctgttgagc
     4321 tggcgaagaa ggatcgccca tcttcccgcc ctctacctgt acgcgagcgt attctggcgg
     4381 ggccgttagg tcgtgcgctg ctgttcaaaa tggtcggcaa gaaaacagaa cacaaaactc
     4441 aaggcaatta tccggcgaca gaacgcatcc tggaggttgt tgaaacggga ttagcgcagg
     4501 gcaccagcag cggttatgac gccgaagctc gggcgtttgg cgaactggcg atgacgccac
     4561 aatcgcaggc gctgcgtagt atcttttttg ccagtacgga cgtgaagaaa gatcccggta
     4621 gtgatgcacc gcctgcgcca ttaaacagcg tgggaatttt aggtggtggc ttgatgggcg
     4681 gcggtattgc ttatgtcact gcttgtaaag cggggcttcc ggtcagaatt aaagatatca
     4741 acccgcaggg cataaatcat gcgctgaagt acagttggga tcagctggag ggcaaagttc
     4801 gccgtcgtca tctcaaagcc agcgaacgtg acaaacagct ggcattaatc tccggaacga
     4861 cggactatcg cggctttgcc catcgcgatc tgattattga agcggtgttt gaaaatctcg
     4921 aattgaaaca acagatggtg gcggaagttg agcaaaattg cgccgctcat accatctttg
     4981 cttcgaatac gtcatcttta ccgattggtg atatcgccgc tcacgccacg cgacctgagc
     5041 aagttatcgg cctgcatttc ttcagtccgg tggaaaaaat gccgctggtg gagattattc
     5101 ctcatgcggg tacatcagcg caaaccatcg ccactacggt aaaactggcg aaaaaacagg
     5161 gcaaaacgcc cattgtcgtg cgtgacaaag ccgggtttta cgtcaatcgc atcttagcgc
     5221 cttacattaa tgaagctatc cgcatgctga ccaaaggtga acgggtagag cacattgatg
     5281 ccgcgctagt gaaatttggt tttccggtag gtccaatcca acttttggat gaggtaggaa
     5341 tcgacaccgg gactaaaatt attcctgtac tggaagccgc ttatggagaa cgttttagcg
     5401 cgcctgcaaa tgttgtttct tcaattttga acgacgatcg caaaggcaga aaaaatggtc
     5461 ggggtttcta tctttatggt cagaaagggc gtaaaagcaa aaaacaggtc gatcccgcca
     5521 tttacccgct cattggcgca caagggcagg ggcgactctc cgcaccgcag gtttctgaac
     5581 ggtgtgtgat gttgatgctg aatgaagcag tacgttgtgt tgatgagcag gttatccgta
     5641 gcgtgcgtga cggggatatt ggtgcggtat ttggcattgg ttttccgcca tttctcggtg
     5701 gaccgttccg ctatatcgat tctctcggcg cgggcgaagt ggttgcaata atgcaacgac
     5761 tggccacgca gtatggttcc cgttttaccc cttgcgagcg tttggtcgag atgggcgcgc
     5821 gtggggaaag tttttggaaa acaactgcaa ctgacctgca ataagaaggt caaagctata
     5881 tgaatccgcg ctgaatggcg gagtattggt caaaatgtaa acgcatattg actatactta
     5941 cgccattgag gtaaaaaaca gcgtttcatt cggtgaatgg ataaggcaca atgccggcca
     6001 ccgttttctt tctctggttt cagatgaaag aaaatgggcg aatctggtta acaaaagcgg
     6061 tgcaatatgc aagtttttat catgcgtcac ggcgacgcag ccctcgatgc cgccagtgat
     6121 tcggttcgtc ctctgaccac taatggttgt gacgaatctc gcctgatggc gaactggctg
     6181 aaaggtcaaa aagtggaaat cgaacgcgtt ctggtgagcc cgttcctgcg agccgagcaa
     6241 acactggaag aagtagggga ttgtctgaac ctgccttcca gtgcagaagt tctgccggag
     6301 ttaacgccct gcggcgatgt tggtctggtc agtgcctatt tgcaggcgtt gaccaatgaa
     6361 ggtgttgctt cggtactggt gatctctcac ttaccgttag tcgggtatct ggttgccgag
     6421 ttatgtccgg gcgaaacgcc gcctatgttt accacctcgg ccattgccag cgtaacgctt
     6481 gatgaaagcg gaaacggtac attcaactgg cagatgagcc cgtgtaatct gaagatggca
     6541 aaagctatct gatgtgttcc aaattatgcc caatgaggta gattcattgg gcataattgc
     6601 tcatcaggca gcggatatct gtcaacctca ctactatcga agactctcct tatctataaa
     6661 taaaacactt tctacattca ttcggaaatt attcttctgc acgtatcttg attttgccca
     6721 aagttacatg ttgaaatgaa taatgtctgt ttgacactca ttgtcattta ttaatacaga
     6781 taatagagtt gaataatcag gcaggatgta attgaaactt gattaaattc tggctatagt
     6841 gtttatatat tatattgtca aaagtggata aatgccaatc gcattatatg ttcattgttt
     6901 gttttttaag ctgttgatat tcattattga tatactttct attttttcta aatacttatt
     6961 ccgtattttt taaggatgtc cttaagataa tctttcttct gtcaatatat taattaaatc
     7021 tacatttact ctttagtaaa attaaattgc atcaggggtg tggaaacatc actatgcggc
     7081 cccacaccaa cgaatacaat tttctacgac ctgttctttt tggatcgcat gccgtattca
     7141 atggctgggt ataaacattg gctattgact gaatcaatgt attgcaatgt ttatattttt
     7201 aattatttat agtttaagga caaataatga gtaagtttgt taaaacagct attgctgcgg
     7261 caatggtgat gggcgtgttc acctctacgg caacaatcgc tgcgggtaac aacggtactg
     7321 cacgttttta cggcaccatt gaagactcag tgtgttctat cgttccggac gatcacaaac
     7381 tggaagttga tatgggtgat atcggtgccg aaaaactgaa aaataacggc accaccacgc
     7441 cgaaaagttt ccagattcgt ctgcaagatt gcgtatttga tacttaggaa acaatgacca
     7501 ctacctttac tggtaccgtt tcttctgcaa atagcggcaa ttattacacc attttcaata
     7561 ccgataccgg tgcggcattt aacaatgtta gcctggcgat cggtgactct ctgggtacct
     7621 cttacaaaag cggcatgggt attgaccaga aaatagtgaa agacacttct actaataaag
     7681 gcaaagcgaa gcagacactg aactttaaag cctggctggt cggcgcagct gatgcgccag
     7741 atctgggtaa tttcgaagca aataccacct tccagattac ttacctgtaa ggcatacccc
     7801 catagcgaca ctgctatggg ggatttaaat ggattttgac cgaacaagaa taaaaacgga
     7861 tagaaacgtg tatgcctgac cattctcttt ttcgattacg gattcttccg tggtgcattg
     7921 cgctggcaat gtcagggagt tatagcagtg tctgggctga agacgacatt cagtttgatt
     7981 cccgttttct ggaattaaaa ggcgacacaa aaattgatct gaagcgtttt tccagccagg
     8041 gatatgttga gcccggaaaa tacaatttac aggttcaact aaataaacag ccattggcgg
     8101 aagagtacga tatttactgg tatgctggtg aagatgacgc gagcaaaagc tatgcttgtc
     8161 tgacaccgga actggtagcg cagtttggtt taaaagaaga cgtggcgaaa aatctgcaat
     8221 ggagccacga tgctaaatgc ctgaaatccg gtcaactgga aggcatggaa attaaggctg
     8281 atttaagcca gtccgcatta gtcatttcac tgccacaggc ttacctcgaa tatacttatc
     8341 ccgactggga tccgccttca cgttgggatg acggcatctc cgggatcgtc gcggactaca
     8401 gcatcaacgc acaaacccgg cacgaagaaa atggcggtga tgatagtaac gagatcagcg
     8461 gcaacgggac ggtcggggtt aacctggggc cgtggcgtat gcgtgctgac tggcagacta
     8521 actatcaaca tactcgcagt aatgatgacg atgaattcag cggcgatgaa actcaaaaaa
     8581 aatgggagtg gagtcgctac tatgcctggc gggcgttacc atcattaaaa gccaaactgg
     8641 cgctgggcga ggattacctc agatccgata tttttgatgg ttttaactat gttggtggta
     8701 gtgtcagtac tgacgatcaa atgttgcctc ccaatctgcg cggctacgcg ccagacattt
     8761 ccggcgtggc acacaccaca gcaaaagtga ccgtcagcca gatggggcgt gtgatttacg
     8821 aaacgcaggt tccggctgga ccgtttcgta ttcaggatct tggtgattct gtctccggta
     8881 cgttgcatat tcgcattgaa gaacagaacg gccaggtgca ggaatatgac atcagcaccg
     8941 cctcgatgcc atacctcact cgtccaggtc agattcgcta taagatcatg atgggccgtc
     9001 cgcaagagtg gggacaccat gtcgagggtg aatttttttc tggtgctgaa gcttcctggg
     9061 ggatcgctaa cggctggtcg ttatatggcg gcgcactggg agatgaaaac tatcagtctg
     9121 cggcgcttgg cgtcggtcgc gatttgtcta cattcggcgc ggtcgcgttt gatgttactc
     9181 actcgcacac caaactggat aaagacaccg cttatggcaa aggttcgctg gacggtaact
     9241 ccttccgtgt gagttattcc aaagactttg accagctcaa cagccgcgtt acttttgctg
     9301 gatatcgctt ctcggaagag aactttatga ccatgagcga gtatctggat gccagtgaca
     9361 gcggaatggt acgcacgggc aacgacaaag agatgtacac cgccacttat aaccagaact
     9421 tccgcgatgc gggtgtttcg gtttatctca actatacccg ccatacctac tgggatcgcg
     9481 aggagcagat aaactacaac atcatgctct cgcactattt caatatgggc agtattcgta
     9541 atgtcagcat ctcgatgact ggctaccgtt acgagtatga caaccaggcc gacaaaggca
     9601 tgtacatttc gctcagtatg ccgtggggcg acaacagtac cgttagctat aacggtaact
     9661 atggcagtgg gacggacagc agtcaggtcg gttatttcag ccgtgtcgat gacgcgactc
     9721 actatcagtt gaacgtcggc accagtgaca aacacaccag cgttgacggc tattacagcc
     9781 atgatggttc gctggcgcag gttgacctca gtgcgaacta ccatgaaggg caatacacct
     9841 ctgcgggctt gtcgttacag ggcggcgcaa cgcttactgc ccacggtggc gcacttcacc
     9901 gtacccagaa tatgggcggg acacgcttgt tgattgatgc cgatggcgtt gccgatgttc
     9961 cggtggaagg taacggggct gctgtttata ccaatatgtt tggtaaagcc gtcgtttctg
    10021 acgtcaataa ctattaccgc aatcaggcgt atatcgacct caacagattg cctgaaaacg
    10081 ctgaagcaac ccagtcggtg gtgcaagcca cgctaactga aggtgccatt ggctaccgta
    10141 aatttgctgt cattagcgga caaaaagcga tggcggtgct gcgcctgagc gacggcagcc
    10201 atcctccgtt tggcgcagaa gtaaaaaatg ataacgagca gacagtgggc cttgtcgatg
    10261 atgacggcaa tgtttatctg gctggggtga aacctggcga acacatgagt gtgttctgga
    10321 gtggtgttgc gcattgcgat atcaacctgc cggacccgct gcctgccgat ctgtttaacg
    10381 gcttgttact accatgccag cataaaggca atgtagcacc tatcacttcg ccggcggtca
    10441 aaccggcgat tcaggaacag acacagcggg tgacgccaac ggaacctccg acttcaattt
    10501 cagtaaacca gtaacgtgat taaggaatga tccatgttta atctgactaa cactgcaaaa
    10561 atcgttgtcc cggcactggc gctgctggcg acagcggtca gtttctccag ccacacttcg
    10621 gtgacgcccg acaggacacg gctggtgttt aacgaaagcg acaagtccat cagcgtcacg
    10681 ctgcgcaaca acgatcccac actgccttat ctggcgcaga gctggataga ggatgcaaag
    10741 ggcaacaaaa tcagctctcc gcttgcggtg cttccgccag tgcagcgcat cgatgcgatg
    10801 atgaacggcc aggtgaaggt gcaggggctg ccggatatca acaaactgcc ggccgaccgc
    10861 gagagcgtgt tctatttcaa cgtgcgcgaa attccgccga aatcaaataa accgaacaca
    10921 ctgcagattg cgctgcagac gcgtatcaaa ctgttctggc gaccgaaggc gctggagaac
    10981 accagcatga aaagtccgtg gcagcataag gtgacgctca tccgtaacgg ccaggacttc
    11041 accgtcaata acccgacgcc gtactacgtg atcatcagca acgccagcgc taaaaaaggc
    11101 ggcaacccgc cggcgggatt cacaccgctg atgatggagc cgaaaacctc cgcaccgctg
    11161 aatgcgaaga tggacagcgt gccggtgctg acttacatca acgactacgg cgcgcggatg
    11221 ccgctgtact tcaaatgcac cggcaacagc tgccaggtgg atgaagagca gagccgcaaa
    11281 ggctgatgcc gggagggact tatgagtcac aagtttgtag cgggcgcagg gttgctggtg
    11341 ctggccggat ggggcatcag cggtttggct gttgctggca gtgatatcaa acaggtggat
    11401 ctgacgctgc gaatcctagt cgatggaccg ccgccttgct ccgtgaaggg aagcgctgtg
    11461 aaatttggca atgtgataat caacaggatc gatggtacca attaccaaca ggatgcgaaa
    11521 tacaccctca actgcggtaa taaagtcagc gatgacttac ggatgcagct caaaggcaat
    11581 accgccgtga tcaacggaga aacggttctc agcacggata tcgccggcct gggggtgcgg
    11641 atagaaaacg ccgccgacaa ctccctgttt gcagttggtg aaaataactg gacgcctttt
    11701 aatgtcaaca ctcagcctca gctgaaagcg gtgccggtaa aacagagcgg ggtgcaactg
    11761 actccgtcgg agtttaacgc cacgatgacc atggtggtgg attaccaatg aaaaaattcc
    11821 tgctcctttt actgtgcgct ggttgcgggg ctgtgctggc ggcggaagat gacatcacat
    11881 tcgacggtac gctgatgtcg ccgcccgcct gtagcatcag cggcgggcaa accatcgaag
    11941 tgcaatttcg cgatctcatt atcgacagca ttgatggcaa ttatggtcgt cagaaagtgg
    12001 actacgaact gagctgcgac tcggatgtcc gcgatcccga gtggaatatg acactctcct
    12061 ggacggggac tgccacctcc tacaacgact ctgctattga gacggatgta ccgggcttcg
    12121 gaattgagct tcagcatgac ggtcagcgtt ttaagctcaa cgagccgctt tccattaacg
    12181 ccaccgattt tagccagaag ccaaagctgg aggcggtacc ggtcaaagcg gctgatgcgg
    12241 tgctgacgga cacgaccttt tctgcttacg caaccttacg ggtggattac caatgaaaac
    12301 agcacacatt tattcacccg gttatgcgct gttagcaggc ctgctgctga ccgccagcac
    12361 aggagcacag gcagtcgaca acaacctgca tttttacggc aacctgctga gtaaatcctg
    12421 cacgctggtg gtggatggtg ccaacctggc agaaatccat tttcccaccg tcagcaaccg
    12481 ggatttgatg gtatctgggc agtccgcgca tctgccggtt gtgtttaagc tgaaagactg
    12541 caaagggccg gcgggataca acgtcaaagt cacgctgagc ggcaccgaag acagcggtca
    12601 gccgggtttt ctggcagtcg atgacacctc caccgcgcag ggcgtgggga tagggatgga
    12661 aacgctcgac ggcaagcggg tggatattaa caacaccacc ggggcgacct ttgcgcttac
    12721 caacggcaac aatgatatta atttccgggc ctggatctag gcgaaaagcg gtcgtgatgt
    12781 aaccatcggt gatttcaccg ccagcctgac agcaactttt gagtatattt aaaatgaaaa
    12841 tccttcgtca tgttttatgt cttttattgc tgttaatgtt caatacatgc ggccaggcgg
    12901 cgacgaaagt tggtgagtta tatgtgccag ctggtgccag ttcacctgcg ac
//
LOCUS       DAJVSY010000120        12917 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.120, whole genome shotgun sequence.
ACCESSION   DAJVSY010000120 DAJVSY010000000
VERSION     DAJVSY010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12917)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12917)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12917
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.120"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..881)
                     /gene="rarD"
                     /locus_tag="OQQ19_003025"
     CDS             complement(<1..881)
                     /gene="rarD"
                     /locus_tag="OQQ19_003025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HCS1804567.1"
                     /translation="MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVI
                     WSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEA
                     SLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFS
                     FAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMLLNLLLIA
                     AGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFI
                     WVALAIFVMDAIYTQRR"
     gene            complement(933..1400)
                     /locus_tag="OQQ19_003026"
     CDS             complement(933..1400)
                     /locus_tag="OQQ19_003026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312777.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HCS1804568.1"
                     /translation="MSAVLTAEQALKLVGEMFVYHMPFNRALGMELERYEKEFAQLAF
                     KNQPMMVGNWAQSILHGGVIASALDVAAGLVCVGSTLTRHETISEDELRQRLSRMGTI
                     DLRVDYLRPGRGERFTATSSLLRAGNKVAVARVELHNEEQLYIASATATYMVG"
     gene            1565..2434
                     /gene="pldA"
                     /locus_tag="OQQ19_003027"
     CDS             1565..2434
                     /gene="pldA"
                     /locus_tag="OQQ19_003027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HCS1804569.1"
                     /translation="MRTLQGWLLPVFMLPMAVYAQEATVKEVHDAPAVRGSIIANMLQ
                     EHDNPFTLYPYDTNYLIYTQTSDLNKEAIASYDWAENARKDEVKFQLSLAFPLWRGIL
                     GPNSVLGASYTQKSWWQLSNSEESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGY
                     NHDSNGRSDPTSRSWNRLYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLK
                     IGYHLGDAVLSAKGQYNWNTGYGGAELGLSYPITKHVRLYTQVYSGYGESLIDYNFNQ
                     TRVGVGVMLNDLF"
     gene            2567..4396
                     /gene="recQ"
                     /locus_tag="OQQ19_003028"
     CDS             2567..4396
                     /gene="recQ"
                     /locus_tag="OQQ19_003028"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026263.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="HCS1804570.1"
                     /translation="MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCL
                     VVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTRE
                     QQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
                     EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLM
                     EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRA
                     DVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA
                     EAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEG
                     RQEPCGNCDICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDY
                     GHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNIAQHSALQLTEAARPVLRGESSL
                     QLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEM
                     AEQMPITASEMLSVNGVGMCKLERFGKPFMALIRAHVDGDDEE"
     gene            4460..5080
                     /gene="rhtC"
                     /locus_tag="OQQ19_003029"
     CDS             4460..5080
                     /gene="rhtC"
                     /locus_tag="OQQ19_003029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine export protein RhtC"
                     /protein_id="HCS1804571.1"
                     /translation="MLMLFLTVAMVHIVALMSPGPDFFFVSQTAVSRSRKEAMMGVLG
                     ITCGVMVWAGIALLGLHLIIEKMAWLHTLIMVGGGLYLCWMGYQMLRGALKKEAVSAP
                     APQIELAKSGRSFLKGLLTNLANPKAIIYFGSVFSLFVGDNVGTTARWGIFALIIVET
                     LAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISR"
     gene            complement(5142..5762)
                     /gene="rhtB"
                     /locus_tag="OQQ19_003030"
     CDS             complement(5142..5762)
                     /gene="rhtB"
                     /locus_tag="OQQ19_003030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine/homoserine lactone efflux protein"
                     /protein_id="HCS1804572.1"
                     /translation="MTLEWWFAYLLTSIILSLSPGSGAINTMTTSLNHGYRGAVASIA
                     GLQTGLAIHIVLVGVGLGTLFSRSVIAFEVLKWAGAAYLIWLGIQQWRAAGAIDLKSL
                     ASTQSRRHLFQRAVFVNLTNPKSIVFLAALFPQFIMPQQPQLMQYIVLGVTTIVVDII
                     VMIGYATLAQRIALWIKGPKQMKALNKIFGSLFMLVGALLASARHA"
     gene            5873..6895
                     /gene="pldB"
                     /locus_tag="OQQ19_003031"
     CDS             5873..6895
                     /gene="pldB"
                     /locus_tag="OQQ19_003031"
                     /EC_number="3.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipase L2"
                     /protein_id="HCS1804573.1"
                     /translation="MFQQQKDWETRENAFAAFTMGPLTDFWRQRDEAEFTGVDDIPVR
                     FVRFRAQHHDRVVVICPGRIESYVKYAELAYDLFHLGFDVLIIDHRGQGRSGRLLADP
                     HLGHVNRFNDYVDDLAAFWQQEVQPGPWRKRYILAHSMGGAISTLFLQRHPGVCDAIA
                     LTAPMFGIVIRMPSFMARQILNWAEAHPRFRDGYAIGTGRWRALPFAINVLTHSRQRY
                     RRNLRFYADDPTIRVGGPTYHWVRESILAGEQVLAGAGDDATPTLLLQAEEERVVDNR
                     MHDRFCELRTAAGHPVEGGRPLVIKGAYHEILFEKDAMRSVALHAIVDFFNRHNSPSG
                     NRSTEV"
     gene            6903..7703
                     /gene="yigL"
                     /locus_tag="OQQ19_003032"
     CDS             6903..7703
                     /gene="yigL"
                     /locus_tag="OQQ19_003032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar/pyridoxal phosphate phosphatase YigL"
                     /protein_id="HCS1804574.1"
                     /translation="MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGINFVFATGR
                     HHVDVGQIRDNLEIKSYMITSNGARVHDLDGNLIFAHNLDRDIASDLFGVVNDNPDII
                     TNVYRDDEWFMNRHRPEEMRFFKEAVFKYALYEPGLLEPEGVSKVFFTCDSHEQLLPL
                     EQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMND
                     AEMLSMAGKGCIMGSAHQRLKDLHPELEVIGTNADDAVPHYLRKLYLS"
     gene            7779..8678
                     /gene="bioP"
                     /locus_tag="OQQ19_003033"
     CDS             7779..8678
                     /gene="bioP"
                     /locus_tag="OQQ19_003033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter"
                     /protein_id="HCS1804575.1"
                     /translation="MALLIITTILWAFSFSFYGEYLAGHVDSYFAVLVRVGLAALVFL
                     PFLRTRGNSLKTVGLYMLVGAMQLGVMYMLSFRAYLYLTVSELLLFTVLTPLYITLIY
                     DIMNKRRLRWGYAFSALLAVIGAGIIRYDQVTDHFWTGLLLVQLSNITFAIGMVGYKR
                     LMETRPMPQHNAFAWFYLGAFLVAVIAWFLLGNAQKMPQTTLQWGILVFLGVVASGIG
                     YFMWNYGATQVDAGTLGIMNNMHVPAGLLVNLAIWHQQPHWPTLITGALVILASLWVH
                     RKWVAPRSSQTADDRRRDCALSE"
     gene            complement(8566..9519)
                     /gene="metR"
                     /locus_tag="OQQ19_003034"
     CDS             complement(8566..9519)
                     /gene="metR"
                     /locus_tag="OQQ19_003034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MetR"
                     /protein_id="HCS1804576.1"
                     /translation="MIEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRL
                     GFRLFVRKSQPLRFTPQGEILLQLANQVLPQISQALQACNEPQQTRLRIAIECHSCIQ
                     WLTPALENFHKNWPQVEMDFKSGVTFDPQPALQQGELDLVMTSDILPRSGLHYSPMFD
                     YEVRLVLAPDHPLAAKTRITPEDLASETLLIYPVQRSRLDVWRHFLQPAGVSPSLKSV
                     DNTLLLIQMVAARMGIAALPHWVVESFERQGLVVTKTLGEGLWSRLYAAVRDGEQRQP
                     VTEAFIRSARNHACDHLPFVKSAERPTYDAPTVRPGSPARL"
     gene            9755..12016
                     /gene="metE"
                     /locus_tag="OQQ19_003035"
     CDS             9755..12016
                     /gene="metE"
                     /locus_tag="OQQ19_003035"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HCS1804577.1"
                     /translation="MTILNHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELR
                     ARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRG
                     RAPTGEPAAAAEMTKWFNTNYHYMVPEFVKGQQFKLTWTQLLEEVDEALALGHNVKPV
                     LLGPVTWLWLGKVKGEQFDRLSLLNDILPVYQQVLAELEKRGIEWVQIDEPALVLELP
                     QAWLDAYKPAYDALQGQVKLLLTTYFEGVTPNLDTITALPVQGLHVDLVHGKDGVAEL
                     HKRLPSDWLLSAGLINGRNVWRADLTEKYAQIKDIVGKRDLWVASSCSLLHSPIDLSV
                     ETRLDAEVKSWFAFALQKCHELALLRDALNSGDTAALAEWSAPIQARRHSTRVHNPAV
                     EKRLAAITAQDSQRANVYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRTLRLDFKKG
                     NLDANNYRTGIAEHIKQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGW
                     VQSYGSRCVKPPIVIGDVSRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPRE
                     DVSRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLQWGVEA
                     FRINAAVAKDDTQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESFEEFDY
                     PNEIGPGVYDIHSPNVPSVEWIEALLKKAAKRIPAERLWVNPDCGLKTRGWPETRAAL
                     ANMVQAAQNLRRG"
     gene            complement(12301..12546)
                     /locus_tag="OQQ19_003036"
     CDS             complement(12301..12546)
                     /locus_tag="OQQ19_003036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HCS1804578.1"
                     /translation="MITETEINVLKVMAEKDINWNWMNLDRTLSIRQIPGFGNVVNIV
                     NKLANEGLVIIEDSGHKSMPHYHVTEKGYNFVKSENK"
     gene            complement(12536..>12917)
                     /locus_tag="OQQ19_003037"
     CDS             complement(12536..>12917)
                     /locus_tag="OQQ19_003037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001280046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804579.1"
                     /translation="PFNPDLAGGPIENLTTDGVTINREGIAIVEKHIARFGHDPINEV
                     MINRLKDIEKGKIPPEQVDLNFYTHECREYQRYCNLGWETGQPDGDAGYALWNHTHTA
                     TLEDYKLKGELNDLYHQDALDYDN"
BASE COUNT         3051 a         3261 c         3443 g         3162 t
ORIGIN      
        1 tttctacgct gcgtataaat cgcatccatc acaaaaattg ccagcgccac ccaaataaag
       61 gcgaaggtca ccatcttatc ggcacccggt ttttcaccat aaaacgtcac tgccaacagg
      121 aacatcagcg tcgggccaat atactggaag aagcctaacg tggagagacg caggcgtgta
      181 gcagctgcgg taaaacacaa cagcggtacg gtggtgacaa taccggcggc gatcagcagc
      241 aaattcagca acatcgggtt ttgccccata tggctggttg agctgtcggc aatagcaaac
      301 agataaatcg ccgccacggg cagcagccac atggtttcga ttaacatgcc ggtttgcgct
      361 tcaacggcaa ttttcttgcg taccagtccg tagaaggcaa aactaaacgc cagccccagc
      421 gcgatgattg gcagcgaacc aaaagtccac aactgaacca acacgccaca tatcgccaga
      481 atcaccgcca gccattgcat ccggcggaat cgctcgccga ggaaaatcat ccccagcaca
      541 atgttcacca gcgggttaat aaagtaacca aggctcgctt ccagcatatg gtgattgttc
      601 accgcccaga taaacagtag ccagttgcca ccaatcagca cggcagagac tgccagcata
      661 aaaattttct gtggcgtctg aatcagcgtt tttaaatagg accactggcg gcaaatgctc
      721 atcagcacca ccataaagaa aaacgaccag atcacgcgat gcgtcaggat ctcatcggcg
      781 ggcacgtagt aaatcagctt gaagtatgct ggcgcaatac cccaaataaa ataagcggca
      841 agagcgagta atacgccctg ccgcgtttgt tttgcatcca tcgggaatac tcatttttaa
      901 ttggtaacag cagtttacct gcttttatgt cttcaaccta ccatataggt ggcggtggca
      961 ctggcaatat aaagctgttc ttcattgtgt aattcaacgc gggcgacggc gactttattg
     1021 cctgcacgca acaggctact ggtagcagta aaacgctcgc ccctgcctgg gcgcagataa
     1081 tcaacgcgaa gatcaatggt ccccatccgc gatagccgct ggcgtagttc atcttcactg
     1141 atggtttcgt ggcgggttaa ggtacttccc acgcacacca gaccggcggc gacatccagc
     1201 gccgacgcaa tgactccgcc gtgcaaaatg ctttgcgccc agttacccac catcatcggc
     1261 tgatttttaa aggccagctg tgcgaactct ttttcgtaac gctccagctc catccctaac
     1321 gcgcggttaa atggcatgtg ataaacaaac atctcaccca ctaatttcag ggcttgttca
     1381 gcggtcagta cggcagacat atcatcctta cacttcattg gttaatgaaa tgttgatttt
     1441 atgcttcttt gttgttggtt tctactttag gaagggataa ctaacggcaa tggagttaag
     1501 tatgtaaaat agcccgcaga aaaacattca ccttatcaat aattcgttac ggagaacacg
     1561 accgatgcgg actctgcagg gctggttgtt gccggtgttt atgttgccta tggcagtata
     1621 tgcacaagag gcaacggtga aagaggtgca tgacgcgcca gcggtgcgtg gcagtattat
     1681 cgccaatatg ctgcaggagc atgacaatcc gttcacgctc tatccttatg acaccaacta
     1741 cctcatctac acccaaacca gcgatctgaa caaagaagcg attgccagtt acgactgggc
     1801 ggaaaatgcg cgtaaggatg aagtaaagtt tcagttgagc ctggcatttc cactgtggcg
     1861 tgggatttta ggcccgaact cggtgttggg tgcgtcttat acgcaaaaat cctggtggca
     1921 actgtccaat agcgaagagt cttcaccgtt tcgtgaaacc aactacgaac cgcaattgtt
     1981 cctcggtttt gccaccgatt accgttttgc aggttggacg ctgcgcgatg tggagatggg
     2041 gtataaccac gactctaacg ggcgttccga cccgacctcc cgcagctgga accgccttta
     2101 tactcgcctg atggcagaaa acggtaactg gctggtagaa gtgaagccgt ggtatgtggt
     2161 gggtaatact gacgataacc cggatatcac caaatatatg ggttactacc agcttaaaat
     2221 cggctatcac ctcggtgatg cggtgttgag tgcgaaagga cagtacaact ggaataccgg
     2281 ttacggcggc gcggagttag gcttaagtta cccgatcacc aaacatgtgc gcctttatac
     2341 tcaggtttac agcggctatg gcgaatcgct catcgactat aacttcaacc agacccgtgt
     2401 cggtgtagga gttatgctaa acgacttgtt ttgatgaacg gttgagtggt tggcaaatct
     2461 ggaacccagc atccaggatt accctctcag agactaaaag cattgcagtt tctcgcgcag
     2521 gcgctgaaaa tagcgcctgt ttttatttca ggcaatcggg gtgaatgtgg cgcaggcgga
     2581 agtgttgaat ctggagtccg gagctaaaca ggttttacaa gaaacctttg gctaccaaca
     2641 gtttcgcccc ggccaggaag aaattatcga cactgtgctt tccggtcgcg attgcctggt
     2701 cgtcatgccc accggtggcg gaaaatccct ttgctatcaa attcctgcct tattgctaaa
     2761 cggccttacc gtggttgttt caccgctgat ttcgttgatg aaagatcagg tggatcaact
     2821 gcaagccaac ggcgtggcgg cggcgtgcct taactcgacg caaacccgcg agcagcaact
     2881 tgaagtgatg acaggctgcc gcaccgggca aattcgtctg ctttatatcg ccccggaacg
     2941 cctgatgctg gataactttc ttgagcatct ggcgcactgg aatccggtgt tattagccgt
     3001 tgatgaagcg cactgtatct cccaatgggg ccacgatttc cgcccggaat atgccgcgct
     3061 tggtcagtta cgccagcgtt tcccgaccct gccgtttatg gcgctgactg ccacagccga
     3121 cgacaccacg cgccaggata tcgtgcgctt gctggggctg aacgatccgc tgattcaaat
     3181 cagcagtttt gaccgtccga atattcgcta catgctgatg gagaagttca aaccgctcga
     3241 tcagttgatg cgctacgtgc aggaacagcg cggtaagtca ggcattatct actgcaacag
     3301 ccgcgcgaaa gtagaagaca ccgctgcgcg cctgcaaagc aagggaatta gcgcggcggc
     3361 ctatcatgct gggctggaaa ataatgttcg cgccgacgtg caggaaaaat ttcagcgcga
     3421 tgacctgcaa attgtggtgg cgacggtggc gttcggcatg ggcatcaata aaccaaacgt
     3481 tcgcttcgtg gtccactttg atattccgcg caatatcgaa tcctattatc aggaaaccgg
     3541 tcgcgccggg cgtgatggcc tgcccgcgga agcgatgctg ttttacgatc cggccgatat
     3601 ggcgtggctg cgccgttgcc tggaagagaa gccgcagggg cagttacagg atatcgaacg
     3661 tcataaactc aatgcgatgg gcgcttttgc cgaagcgcaa acttgccgtc gtctggtatt
     3721 gctgaactat tttggcgaag ggcggcaaga gccgtgcggg aactgcgata tctgcctcga
     3781 tccgccgaaa cagtacgacg gttcaaccga tgctcagatt gccctttcca ccattggtcg
     3841 tgtgaatcag cggtttggga tgggttatgt ggtggaagtg attcgtggtg ctaataacca
     3901 gcgtatccgc gactatggtc atgacaaact gaaagtctat ggcatgggcc gtgataaaag
     3961 ccatgaacat tgggtgagcg tgatccgcca gctgattcac ctcggcctgg tgacgcaaaa
     4021 tattgcccag cattctgccc tacaactgac agaggccgcg cgcccggtgc tgcgcggcga
     4081 atcctctttg caacttgccg tgccgcgtat cgtggcgctc aaaccgaaag cgatgcagaa
     4141 atcgttcggc ggcaactatg atcgcaaact gttcgccaaa ttacgcaaac tgcgtaaatc
     4201 gattgccgat gaaagtaatg tcccgccgta cgtggtgttt aacgacgcaa ccttgattga
     4261 gatggctgaa cagatgccga tcaccgccag cgaaatgctc agcgttaacg gcgttgggat
     4321 gtgcaagctg gaacgctttg gtaaaccgtt tatggcgctg attcgtgcgc atgtcgatgg
     4381 cgacgacgaa gagtagtcag cagcataaaa aagtgccagg atgaagactc cgtaaacgtt
     4441 tcccccgcga gtcaaatgta tgttgatgtt atttctcacc gtcgccatgg tgcacattgt
     4501 ggcgcttatg agccccggtc ccgatttctt ttttgtctct cagaccgctg tcagtcgttc
     4561 ccgtaaagaa gcgatgatgg gcgtgctggg tattacctgc ggcgttatgg tttgggcagg
     4621 gattgcgttg cttggcctgc atttgattat cgaaaaaatg gcctggctgc atacgctgat
     4681 tatggttggc ggtggcctgt atctctgctg gatgggttac cagatgctac gcggtgcact
     4741 gaaaaaagag gctgtatctg cgcctgcacc acagattgag ctggcgaaaa gcgggcgcag
     4801 tttcctgaaa ggtttactga ccaatctcgc taatccgaaa gcgattatct actttggctc
     4861 ggtgttctca ttgtttgtcg gtgataacgt tggcactacc gcgcgctggg gcatttttgc
     4921 gctgatcatt gtcgaaacac tggcgtggtt taccgtcgtt gccagcctgt ttgccctgcc
     4981 gcaaatgcgc cgtggttatc aacgtctggc gaagtggatt gatggttttg ccggggcgtt
     5041 atttgccgga tttggcattc atttgattat ttcgcggtga tgccagacgc gtcttcagag
     5101 taagtcggat aaggcgttta cgccgcatcc gacattattt ttcacgcatg cctcgccgat
     5161 gctaacagcg ctcccaccag cataaacaac gagccgaaaa tcttattcag cgccttcatc
     5221 tgctttggtc ctttaatcca tagagcaatc cgttgagcaa gggtggcgta accgatcatc
     5281 acaataatat cgactacaat agtggtgacg ccgagcacga tatactgcat cagttgcggc
     5341 tgctgtggca tgatgaattg cggaaatagc gccgccagaa acacaatact tttgggattg
     5401 gtgagattca caaaaactgc gcgctggaac aaatgtcgac gcgattgagt agaggccagc
     5461 gatttaaggt caattgcacc agcggcgcgc cactgctgga ttcccagcca aatcaagtaa
     5521 gccgcgcctg cccacttcaa cacttcaaac gcaatcactg agcgggaaaa tagcgtcccc
     5581 aaacccacgc caaccagcac aatatgaatc gccagtccgg tctgaagccc agcaatagac
     5641 gccaccgcgc cgcgataacc gtggttgagc gaggtggtca tagtgttgat tgcaccagag
     5701 cctggcgaca ggcttaaaat gatcgatgtc agcaggtagg caaaccacca ttctaaggtc
     5761 atgatgaact cccggtgtgt ctatttttgt gccacaatac gctactgtcg cagcgttgtg
     5821 tcaggcacgc taaaaaaaac gattttacgt ggtttaagag gcagattacc cgatgtttca
     5881 gcagcaaaaa gactgggaaa caagagaaaa cgcgtttgct gcttttacca tgggaccgct
     5941 gactgatttc tggcgtcagc gtgatgaagc agagtttact ggtgtggatg acattccggt
     6001 gcgctttgtc cgttttcgcg cacagcacca tgaccgggtg gtagtcatct gcccggggcg
     6061 tattgagagc tacgtaaaat atgcggaact ggcctatgac ctgttccatt tggggtttga
     6121 tgtcttaatc atcgaccatc gcgggcaggg acgttccggt cgcctgttag ccgatccgca
     6181 tctcgggcat gttaatcgct ttaatgatta tgttgatgat ctggcggcat tctggcagca
     6241 ggaggtccag cccggtccgt ggcgtaaacg ctatatactg gcacattcga tgggcggtgc
     6301 gatctccaca ttatttctgc aacgccatcc aggtgtatgt gacgccattg cgctaactgc
     6361 gccaatgttt gggatcgtga ttcgtatgcc gtcatttatg gcacggcaga tcctcaactg
     6421 ggccgaagcg catccacgtt tccgtgatgg ctatgcaata ggcaccgggc gctggcgcgc
     6481 gttgccgttt gctatcaacg tactgaccca cagcagacag cgatatcgac gtaacttacg
     6541 cttctatgct gatgacccaa cgattcgcgt cggtgggccg acctaccatt gggtacgcga
     6601 aagtattctg gctggcgaac aggtgttagc cggtgcgggt gatgacgcca cgccaacgct
     6661 tctcttgcag gctgaagagg aacgcgtggt ggataaccgc atgcatgacc gtttttgtga
     6721 actccgcacc gccgcgggcc atcctgtcga aggaggacgg ccgttggtaa ttaaaggtgc
     6781 ttaccatgag atcctttttg aaaaggacgc aatgcgctca gtcgcgctcc acgccatcgt
     6841 tgattttttc aacaggcata actcacccag cggaaaccgc tctacagagg tttaaatttc
     6901 ttatgtacca ggttgttgcg tctgatttag atggcacgtt actttctccc gaccatacgt
     6961 tatcccctta cgccaaagaa actctgaagc tgctcaccgc gcgcggcatc aactttgtgt
     7021 ttgcgaccgg tcgtcaccac gttgatgtgg ggcaaattcg cgataatctg gagattaagt
     7081 cttacatgat tacctccaat ggtgcgcgcg ttcacgatct ggatggtaat ctgatttttg
     7141 ctcataacct ggatcgcgac attgccagcg atctgtttgg cgtagtcaac gacaatccgg
     7201 acatcattac taacgtttat cgcgacgacg aatggtttat gaatcgccat cgcccggaag
     7261 agatgcgctt ttttaaagaa gcggtgttca aatatgcgct gtatgagcct ggattactgg
     7321 agccggaagg cgtcagcaaa gtgttcttca cctgcgattc ccatgaacaa ctgctgccgc
     7381 tggagcaggc gattaacgct cgttggggcg atcgcgtcaa cgtcagtttc tctaccttaa
     7441 cctgtctgga agtgatggcg ggcggcgttt caaaaggcca tgcgctggaa gcggtggcga
     7501 agaaactggg ctacagcctg aaggattgta ttgcgtttgg tgacgggatg aacgacgccg
     7561 aaatgctgtc gatggcgggg aaaggctgca ttatgggcag tgcgcaccag cgtctgaaag
     7621 accttcatcc cgagctggaa gtgattggta ctaatgccga cgacgcggtg ccgcattatc
     7681 tgcgtaaact ctatttatcg taatcgttct ttatttggtc agttgtcaac ctgatacttc
     7741 gctacaatgg atactcgtta atcaaagagt tttccattgt ggcgctactt atcatcacca
     7801 cgattctgtg ggccttctcc tttagctttt atggcgagta ccttgcgggg cacgtcgata
     7861 gctattttgc ggtgctggtg cgcgttggcc tggcggcact cgtttttctg ccgtttctgc
     7921 gtacccgtgg caatagcctg aaaacagtcg gcctgtatat gctggtgggc gcgatgcagc
     7981 tcggcgtgat gtatatgctg agtttccgcg cttatctcta tctgacggtt tccgaactgc
     8041 tgctgttcac cgtactgacg ccgctctaca tcacgctgat ttatgacatc atgaataagc
     8101 gccgtctgcg ctggggatat gcttttagtg ccttgttggc ggtgattggt gccgggatta
     8161 ttcgctatga tcaggtcacc gaccatttct ggactggctt gttgctggtg caactctcca
     8221 atatcacttt tgccatcggc atggtgggtt acaaacgcct gatggaaact cgcccgatgc
     8281 cgcagcataa cgcctttgcg tggttctatc ttggcgcgtt cctggtggcg gtaattgcat
     8341 ggttcttgct gggaaatgcg cagaaaatgc cgcaaaccac gttgcaatgg ggcattctgg
     8401 tgtttcttgg cgtggtggct tccgggattg gctactttat gtggaactac ggcgcgacgc
     8461 aggtggacgc cggaacgctg ggaattatga ataatatgca cgttccggca gggctgctgg
     8521 taaacctggc tatctggcac caacagccgc actggccaac gttgattaca ggcgcgctgg
     8581 tgatcctggc ctcactgtgg gtgcatcgta agtgggtcgc tccgcgctct tcacaaacgg
     8641 cagatgatcg caggcgtgat tgcgcgctga gcgaataaac gcttccgtaa ctggctgacg
     8701 ctgctcgcca tcgcgcacgg cggcgtacag tcggctccac aagccttcgc ccagggtttt
     8761 ggtcaccacc agaccctggc gctcaaaact ctctactacc caatgcggta gcgcggcaat
     8821 acccatccgc gcggcaacca tctgaatcaa caataaggtg ttatcgacgc ttttcagtga
     8881 cggactgacg cctgccggct gaagaaaatg ccgccagaca tccagtcgac tacgctgcac
     8941 cggataaatt aatagcgtct cgctggcgag atcttccggt gtaatacgcg tttttgccgc
     9001 cagtggatgg tcaggtgcta acaccagacg cacttcatag tcgaacatcg gcgaataatg
     9061 cagaccactg cgcggcagaa tatcggacgt cattaccaga tccagctctc cctgttgcaa
     9121 ggcgggctgc gggtcaaatg tcacgcccga tttaaagtcc atctcgacct gcggccagtt
     9181 cttatggaaa ttttctaacg cgggcgtcag ccactgtata cagctatggc actcaatggc
     9241 aatgcgcaga cgcgtctgct gcggttcatt gcaggcttgc agtgcctggc taatttgtgg
     9301 cagcacctgg tttgccagtt gcaacaggat ttctccctgc ggtgtaaagc gaagcggctg
     9361 gcttttacgc acaaatagcc ggaagccaag gcgttgttcc agatcgctaa actggtgaga
     9421 cagggcggat tgcgtttgat gcaacgtcgc cgcagcggct gcgagtgagc cgcagttccg
     9481 caacgcttgt agcgttttca gatgttttac ttcgatcatg aaagtccttc acttcggcat
     9541 gaataatttg cgcttgagga atatacagta accgccaatt atggatgtgt aaacatctgg
     9601 acggctaaaa tccttcgtct tttaaattta tggtgcgttg gctgcgtttc tccaccccgg
     9661 tcacttactt cagtaagctc ccggggatga ataaacttgc cgccttccct aaattcaaaa
     9721 tccataggat ttacatataa ttagaggaag aaaaatgaca atattgaatc acaccctcgg
     9781 tttccctcgc gttggcctgc gtcgcgagct gaaaaaagcg caagagagtt attgggcagg
     9841 gaactccacg cgtgaagaac tgctggcggt agggcgtgaa ttgcgtgctc gtcactggga
     9901 tcaacaaaag caagcgggta tcgacctgct gccggtgggc gattttgcct ggtacgatca
     9961 tgtactgacc accagtctgc tgctgggtaa cgttccggcg cgtcatcaga acaaagatgg
    10021 ttcggtagat attgacaccc tgttccgtat tggtcgtgga cgtgcgccga ctggcgaacc
    10081 tgcggcggca gcggaaatga ccaaatggtt taacaccaac tatcactaca tggtgccgga
    10141 attcgttaaa ggccaacagt tcaaactgac ctggacgcag ctgctggagg aagtggacga
    10201 ggcgctggcg ctgggccaca acgttaagcc tgtgctgctg gggccggtta cctggctgtg
    10261 gctggggaaa gtgaaaggtg aacagtttga ccgcctgagc ctgctgaacg acattctgcc
    10321 ggtttatcag caagtgctgg cagaactgga gaaacgcggc atcgagtggg tacagattga
    10381 tgaacccgcg ctggtactgg aactaccaca ggcgtggctg gacgcataca aacccgctta
    10441 cgacgcgctc cagggacagg tgaaactgct gctgactacc tattttgaag gcgttacgcc
    10501 aaatctcgac acgattactg cgctgcctgt tcagggactg catgtggacc ttgtacatgg
    10561 taaagatggc gttgctgaac tgcacaagcg cctgccttct gactggctgc tgtctgcggg
    10621 actgatcaat ggtcgtaacg tctggcgcgc cgatcttact gagaaatatg cgcaaattaa
    10681 ggacattgtc ggcaaacgtg atttgtgggt ggcatcttcc tgctcgttgc tgcacagccc
    10741 catcgacctg agcgtggaaa cgcgtcttga tgcagaagtg aaaagctggt ttgccttcgc
    10801 cttacaaaaa tgccatgaac tggcactgct gcgcgatgcg ctgaacagtg gtgacacggc
    10861 agctctggca gagtggagcg ccccaattca ggcgcgtcgt cactctactc gtgtacataa
    10921 tccggcggta gaaaagcgtc tggcggcgat caccgcccag gacagccagc gtgcgaatgt
    10981 ctatgaagtg cgtgctgaag cccagcgtgc gcgttttaaa ctgccagcgt ggccgaccac
    11041 cacgattggt tccttcccgc aaaccacgga aattcgtacc ctgcgtctgg atttcaaaaa
    11101 gggcaatctc gacgccaaca actaccgcac gggcattgcg gaacatatca agcaggccat
    11161 tgttgagcag gaacgtttgg gactggatgt gctggtacat ggcgaggccg agcgtaatga
    11221 catggtggaa tactttggcg agcacctcga cggatttgtc tttacgcaaa acggttgggt
    11281 acagagctac ggttcccgct gcgtgaagcc accgattgtt attggtgacg ttagtcgccc
    11341 ggcaccgatt accgtggagt gggcgaagta tgcgcaatct ctgactgata aaccggtgaa
    11401 agggatgctg actggcccgg tgaccattct ctgctggtcg ttcccgcgtg aagatgtcag
    11461 ccgtgaaacc atcgccaaac aaattgcgct ggcgctgcgt gatgaagtgg cggacctgga
    11521 agccgcagga attggcatca tccagattga tgaaccggcg ctgcgcgaag gtttaccgct
    11581 gcgtcgtagc gactgggatg catatctcca gtggggcgtg gaggccttcc gtatcaacgc
    11641 cgccgtggcg aaagatgaca cacaaatcca cactcacatg tgttattgcg agttcaacga
    11701 catcatggat tccattgcgg cactggatgc agacgtcatc accatcgaaa cctcgcgttc
    11761 cgacatggag ttgctggagt cgtttgaaga gtttgattat ccgaatgaaa tcggtccagg
    11821 cgtctatgac attcactcgc caaacgtacc gagcgtagaa tggattgaag ccttgctgaa
    11881 gaaagcggca aaacgcattc cggcagagcg cctgtgggtc aacccggact gtggcctgaa
    11941 aacgcgcggc tggccagaaa cccgcgcggc actggcgaac atggtgcagg cggcgcagaa
    12001 tttgcgtcgg ggatgatgaa tattaacgag tcactgtaaa ttgcagtacg atgaaagagg
    12061 caaaactgcc tgataccagg cctacataat ttatgcaatt tattgaattt ttgagttttg
    12121 ttggccggac aaggcgttca cgccgcatcc ggcatgaaca acgcgcactt tgccaataat
    12181 ctgatggctt ccatcaccgg aagccatttt gctatctgcg cccgttcaga tacagaaata
    12241 accgaatcat ttttacgcaa aatataatcc tgagcgattt gttcagtaat caacgctacg
    12301 ttatttattc tcacttttca cgaaattgta tcccttttca gtaacgtggt agtgaggcat
    12361 agacttatgt ccgctatcct caataataac caaaccctcg ttagctaatt tgttaacaat
    12421 gttaacaaca ttaccgaatc ctggaatttg ccttatggat agtgtgcgat cgagattcat
    12481 ccagttccag tttatatctt tctcagccat aactttcagt acgttaattt cagtttcagt
    12541 tatcatagtc aagtgcatcc tggtggtata agtcattaag ttctccctta agtttataat
    12601 cttctagagt agcagtatgc gtatgattcc agagtgcata gcctgcgtca ccatcaggtt
    12661 gtcctgtttc ccaaccaaga ttacagtaac gctgatattc ccgacactca tgagtataga
    12721 agttaagatc tacttgttct ggggggattt ttcctttctc aatgtctttc agtctattga
    12781 tcatcacttc atttataggg tcatgaccaa atctggctat gtgtttttca acaatagcga
    12841 taccttccct gttgattgtt acgccatctg tcgtcagatt ttctattgga ccaccggcaa
    12901 ggtcgggatt aaatggt
//
LOCUS       DAJVSY010000121        12909 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.121, whole genome shotgun sequence.
ACCESSION   DAJVSY010000121 DAJVSY010000000
VERSION     DAJVSY010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12909)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12909)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12909
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.121"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..1566
                     /locus_tag="OQQ19_003038"
     CDS             <1..1566
                     /locus_tag="OQQ19_003038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha amylase C-terminal domain-containing
                     protein"
                     /protein_id="HCS1804580.1"
                     /translation="IRENMSEFARCHYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQ
                     PEDLCTIHNPMGDLQDFIALVKDAKKFGIDIIPDYTFNFMGIGGSGKNDLDYPSADIR
                     AKISKDIESGIPGYWQGQVLIPFIKDPVTKERKQIHPEDIHLTAKDFEASKDNISKDE
                     WENLHALKEKRLNGMPKTTPKSGQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIE
                     RSITPPLKNYNERLHNTNLFNPKYQKKAVMNYMEYLVTCQLDEQQMSSLLYERDDLSA
                     IDFSLLMKTIKAFSFGGDLQTLASKPGSTISSIPSERRILININHDFPNNGNLFNDFL
                     FNHQQDEQLAMAYMAALPFSRPLVYWDGQVLKSTTEIKNYDGSTRVGGEAWLNKGCST
                     YQQLYNEFHALYIDKAGIWSAFEGVFATKNVLAFSRGDSVNINHSPHDGLVIINKGNE
                     EVEGTWPNKLQPGIYKNMGSNSVNIIINNTRKIILPGKVFTLRGGTLNINIPGRSALL
                     LGKTGEPPNYLYL"
     gene            1902..2879
                     /gene="csiD"
                     /locus_tag="OQQ19_003039"
     CDS             1902..2879
                     /gene="csiD"
                     /locus_tag="OQQ19_003039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311547.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation induced protein CsiD"
                     /protein_id="HCS1804581.1"
                     /translation="MNALIAVQNNAVDSGQDYSGFTLIPSAQSPRLLELTFTEQTTKQ
                     FLEQVAEWPVQALEYKSFLRFRVGKILDDLCANQLQPLLLKPLLNRAEGALLINAVGI
                     DDVAQADEMVKLATAVAHLIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELH
                     NDGTYVEEITDYVLMMKIDEQNMQGGNSLLLHLDDWEHLDHYFRHPLARRPMRFAAPP
                     SKNVSKDVFHPVFDVDQQGRPVMRYIDQFVQPKDFEEGVWLSELSDAIETSKGILSVP
                     VPVGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYFAYATHHYQTHQ"
     gene            2899..4167
                     /gene="lhgO"
                     /locus_tag="OQQ19_003040"
     CDS             2899..4167
                     /gene="lhgO"
                     /locus_tag="OQQ19_003040"
                     /EC_number="1.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417146.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-2-hydroxyglutarate oxidase"
                     /protein_id="HCS1804582.1"
                     /translation="MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESGPACHQTG
                     HNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQNDIRYDNCGKMLIATSDLEMERM
                     RALWERTAANGIEREWLNAEELREREPNITGLGGIFVPSSGIVSYREVTAAMAKIFQA
                     RGGEIIYNAEVSALSEHKNGVVVRTRQGGEYEASTLISCSGLMANRLVKMLGLEPGFI
                     ICPFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKR
                     EGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLS
                     LSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVSK
                     VQTLLASQSNPGRTLRATRSVDALHAAFNQ"
     gene            4190..5625
                     /gene="gabD"
                     /locus_tag="OQQ19_003041"
                     /pseudo
     CDS             4190..5625
                     /gene="gabD"
                     /locus_tag="OQQ19_003041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311549.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent succinate-semialdehyde
                     dehydrogenase"
     gene            5639..6905
                     /gene="gabT"
                     /locus_tag="OQQ19_003042"
                     /pseudo
     CDS             5639..6905
                     /gene="gabT"
                     /locus_tag="OQQ19_003042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417148.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate--2-oxoglutarate transaminase"
     gene            7143..8504
                     /gene="gabP"
                     /locus_tag="OQQ19_003043"
     CDS             7143..8504
                     /gene="gabP"
                     /locus_tag="OQQ19_003043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005114089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GABA permease"
                     /protein_id="HCS1804583.1"
                     /translation="MGQSSQPHELGGGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAG
                     PAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW
                     VLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKV
                     IAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAE
                     IVTIAAAESDTPEKHIARATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSV
                     LELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTP
                     YVAVLLSTGAAFLTVVVNYYVPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAE
                     GSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLEVISTDLLAIGIICTVPIMAA
                     GIS"
     gene            8563..9225
                     /gene="csiR"
                     /locus_tag="OQQ19_003044"
     CDS             8563..9225
                     /gene="csiR"
                     /locus_tag="OQQ19_003044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311552.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CsiR"
                     /protein_id="HCS1804584.1"
                     /translation="MTITSLDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLR
                     EALSQLVAERLVTVVNQKGYRVASMSEQELLDIFDARANMEAMLVSLAIARGSDEWEA
                     DVLAKAHLLSKLEACDASEKMLDEWDLRHQAFHTAIVAGCGSHYLLQMRERLFDLAAR
                     YRFIWLRRTVLSVEMLEDKHDQHQTLTAAVLARDTARASELMRQHLLTPIPIIQQAMA
                     GN"
     gene            complement(9226..9675)
                     /gene="kbp"
                     /locus_tag="OQQ19_003045"
     CDS             complement(9226..9675)
                     /gene="kbp"
                     /locus_tag="OQQ19_003045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium binding protein Kbp"
                     /protein_id="HCS1804585.1"
                     /translation="MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDAD
                     KVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGIASVDDQVKTATPATASQFYTVK
                     SGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPEE"
     gene            complement(9759..9917)
                     /locus_tag="OQQ19_003046"
     CDS             complement(9759..9917)
                     /locus_tag="OQQ19_003046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaE/Pmp3 family membrane protein"
                     /protein_id="HCS1804586.1"
                     /translation="MGFWRIVITIILPPLGVLLGKGFGWAFIINILLTLLGYIPGLIH
                     AFWVQTRD"
     gene            10100..10399
                     /locus_tag="OQQ19_003047"
     CDS             10100..10399
                     /locus_tag="OQQ19_003047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1804587.1"
                     /translation="MTELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGEL
                     TRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKNVYCP"
     gene            10409..10933
                     /gene="ygaP"
                     /locus_tag="OQQ19_003048"
     CDS             10409..10933
                     /gene="ygaP"
                     /locus_tag="OQQ19_003048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase YgaP"
                     /protein_id="HCS1804588.1"
                     /translation="MALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLS
                     VLEQSGLPPKLRREQIIFHCQAGKRTSNNADKLAAIAAPAEIFLLEDRIDGWKRAGLP
                     VAVNKSQPLPLMRQVQIAAGGLILIGVVLGYTVNSGFFLLSGFVGAGLLFAGISGFCG
                     MARLLDKMPWNQRA"
     gene            complement(10980..11384)
                     /gene="stpA"
                     /locus_tag="OQQ19_003049"
     CDS             complement(10980..11384)
                     /gene="stpA"
                     /locus_tag="OQQ19_003049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein StpA"
                     /protein_id="HCS1804589.1"
                     /translation="MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEE
                     EQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV
                     NGETKTWTGQGRTPKPIAQALAEGKSLDDFLI"
     gene            12051..12500
                     /gene="alaE"
                     /locus_tag="OQQ19_003050"
     CDS             12051..12500
                     /gene="alaE"
                     /locus_tag="OQQ19_003050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-alanine exporter AlaE"
                     /protein_id="HCS1804590.1"
                     /translation="MFSPQSRLRHAVADTFAMVVYCSVVNMCIEVFLSGMSFEQSFYS
                     RLVAIPVNILIAWPYGMYRDLFMRAARKVSPSGWIKNLADILAYVTFQSPVYVAILLV
                     VGADWHQIMAAVSSNIVVSMLMGAVYGYFLDYCRRLFKVSRYQQVKA"
     gene            complement(12537..12881)
                     /locus_tag="OQQ19_003051"
     CDS             complement(12537..12881)
                     /locus_tag="OQQ19_003051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgaC family protein"
                     /protein_id="HCS1804591.1"
                     /translation="MYLRPDEVARVLEKVGFTVDVVTQKAYGYRRGENYVYVNREARM
                     GRTALVIHPTLKERSSTLADPASDIKTCDHYQQFPLYLAGERHEHYGIPHGFSSRVAL
                     ERYLNGLFGEAS"
BASE COUNT         3218 a         3164 c         3296 g         3231 t
ORIGIN      
        1 atcagggaaa atatgtctga gtttgcacgt tgccattatg ggtatataca aatccctcca
       61 gtgacaactt tccgcgccga cggaccagaa actcccgaag aagaaaaagg ttactggttt
      121 catgcttatc aacccgaaga tctttgtacc atccataacc caatgggaga tttgcaggat
      181 tttatcgcat tggttaaaga tgctaaaaaa tttggtatcg atatcattcc tgattataca
      241 tttaacttta tgggaatcgg gggtagtggt aaaaatgacc tggattatcc ctctgctgat
      301 atacgagcga agatcagtaa agatatagaa agcggtatcc ctggctattg gcaaggtcag
      361 gttttgattc cattcattaa agatccagta acaaaagaac gtaaacaaat ccatccagaa
      421 gatatacatc tcactgcaaa agacttcgaa gcaagtaaag ataacatctc taaggatgaa
      481 tgggaaaacc tccatgcatt aaaagaaaag cgtttaaatg gaatgcctaa aacaacaccc
      541 aaaagtggcc aggttattat gttgcaaaat caatacgttc gagaaatgcg aaaatatggc
      601 gtacgaggtt tacgttatga tgcggcaaaa cactcaaaac atgaacaaat agagaggtcg
      661 ataaccccac cgcttaaaaa ttataatgag cggttacaca atactaattt atttaaccca
      721 aaatatcaaa aaaaagccgt tatgaattac atggaatacc tggtaacttg tcagttggat
      781 gaacaacaaa tgtcatcact gctttatgag agagatgatt taagtgccat tgatttttct
      841 ttactcatga aaacgataaa agccttttca tttggtggag atctccaaac ccttgcatca
      901 aaaccgggtt ccacaatctc aagtatccca tcagaaagac ggatattgat taacattaac
      961 cacgattttc ctaacaatgg taatcttttc aatgactttc tatttaacca tcaacaagat
     1021 gaacaattag caatggcata tatggccgct ctcccgttca gcagaccttt agtttactgg
     1081 gatggccaag tattaaaatc aacgactgaa attaaaaatt atgatgggtc cacgcgtgtc
     1141 ggcggtgagg cgtggcttaa taaaggttgc tctacctatc agcagctcta caatgaattc
     1201 cacgcattat atatagataa agcaggaata tggagcgcat ttgagggtgt atttgcaact
     1261 aaaaacgttc tggcctttag tcgtggggat tctgtgaaca ttaatcactc tcctcatgat
     1321 gggctagtta taataaataa aggaaacgaa gaagttgaag gtacctggcc taacaaattg
     1381 caacctggaa tatacaaaaa catggggagt aatagcgtta acattattat taataatacc
     1441 cgaaaaatta tcctccctgg taaagtattt acgcttagag gcggaactct aaatatcaat
     1501 attcctgggc gtagcgctct tcttttaggg aaaacaggag aaccgccgaa ctatctctat
     1561 ttataattta atgttatatc tgccccgata aaacggggca gataatatgt ttagtttact
     1621 aacggtcatt ttgcagtgaa gccatttact gttttttatc gaccagataa tctgttctct
     1681 aatgttaact ccccctaacc tgttgcttta gttattcatt tcctgtctca ctttgcctta
     1741 ataccctacg ttaaatgtta ctaatttgtt gtttttgatc acaataagaa aacaatatgt
     1801 cgcttttgtg cgcatttttc agaaatgtag atatttttag attatggcta cgaaatgagc
     1861 atcgccatgt caccctacat ctcataagag gatcgcttct gatgaatgca ctgatcgccg
     1921 tacaaaataa cgctgtcgat tcaggccagg actatagcgg attcactctc atcccgtcgg
     1981 cgcaatcccc gcgtctgctg gaactcacct tcaccgaaca gacgaccaaa cagtttctcg
     2041 aacaggttgc cgaatggccc gtgcaggcgc tggagtacaa atcgtttctg cgttttcggg
     2101 taggcaaaat tcttgacgat ctgtgtgcga atcagctgca accattgctg ttgaagcccc
     2161 tgctaaaccg tgctgaaggt gcgctgttga tcaatgcggt gggtatcgat gatgtggcgc
     2221 aggcagatga gatggtgaag ctggcaacgg cggtagcgca tctgattggt cgctcaaatt
     2281 tcgatgcgat gagcggtcag tattacgcgc gtttcgtggt gaaaaatgtc gataactcag
     2341 acagctatct gcgtcagccg caccgcgtga tggaactgca caacgacggc acgtatgtcg
     2401 aagagatcac cgattacgtg ctgatgatga aaatcgatga gcaaaacatg cagggtggaa
     2461 attcgttgct gctgcatctc gatgactggg aacatctgga ccactatttc cgccatccac
     2521 tggcgcgtcg cccgatgcgc tttgccgcgc cgccgagcaa aaacgtcagc aaagatgttt
     2581 tccatccagt gttcgacgtt gatcaacagg gtcgcccggt gatgcgctat atcgaccagt
     2641 tcgtccagcc aaaagatttt gaagaaggcg tgtggttgag cgagctttcc gatgccattg
     2701 aaaccagcaa aggcattctt tctgtacccg ttcccgttgg caaattcctg ttgataaaca
     2761 acctgttctg gctgcacggt cgcgaccgct ttactccgca cccggatctg cgccgtgaac
     2821 tgatgcgtca gcgtggctat ttcgcttacg ccactcacca ctaccagacg catcagtaag
     2881 cgcaaaggaa ttgagcggat gtatgatttt gtgattattg gcggcggcat catcggcatg
     2941 tcgaccgcca tgcaactgat tgatgtttat ccggatgccc gcattgcgtt gctggaaaaa
     3001 gagtccggcc cggcctgtca ccagacgggc cacaacagcg gcgtgatcca tgccggggtc
     3061 tattacacgc ccggcagcct gaaggcgcag ttttgcctgg cgggaaaccg cgccaccaaa
     3121 gccttttgcg atcaaaacga cattcgctat gacaactgcg gcaagatgct gatcgccacg
     3181 tccgatctcg aaatggaacg gatgcgcgcg ttgtgggaac gcacggcggc gaacggtatc
     3241 gagcgcgagt ggttaaacgc cgaggaactg cgcgagcgcg aaccgaatat caccgggctc
     3301 ggcggcattt ttgtgccgtc cagcggcatt gtcagctatc gcgaagtcac agcggcaatg
     3361 gcaaaaatct tccaggccag aggcggtgag attatttata acgccgaagt cagcgccctc
     3421 agtgagcata aaaacggcgt ggtcgtccga acccgtcagg gcggcgaata tgaagcatcg
     3481 acgctgatta gctgttccgg gctgatggct aaccggctgg tgaaaatgct cggcctcgaa
     3541 ccgggtttta ttatctgccc gttccgtggc gagtatttcc gccttgcgcc ggagcataac
     3601 cagattgtta accatctgat ttaccccatc cctgacccgg caatgccgtt tttgggcgtg
     3661 catctcaccc gcatgatcga cggcagcgtg accgtcgggc caaacgcggt gctggctttt
     3721 aaacgcgaag gctatcgcaa gcgcgacttc tcatttagcg acacgctgga aattttaggc
     3781 tcgtcgggga ttcgccgggt gctgcaaaac catctacgct caggactggg cgagatgaaa
     3841 aactcgctgt gcaaaagcgg ctatctgcgg ctggtgcaaa agtattgtcc ccggctttcg
     3901 ttaagcgatc tccagccctg gcccgccggt gtgcgggcgc aggcggtatc gccggacggc
     3961 aagctgattg acgattttct gtttgtcacc accccgcgca cgatccacac ctgcaatgcg
     4021 ccctccccgg cagcgacatc agcaattcct attggtgcgc atattgtcag caaggtacaa
     4081 acgctgttgg caagccagag taaccccgga cgcacgctgc gagcgacacg tagtgtggat
     4141 gccttacacg ccgcatttaa tcaataacct ttgaaaacag gacgtaacaa tgaaacttaa
     4201 cgacagtaac ttattccgcc agcaggcgtt gattaacggg gaatggctgg acgccaacaa
     4261 tggcgggatc atcgacgtca ccaatccggc gaacggcgac aagctgggta gcgtgccgaa
     4321 aatgggcgct gatgaaaccc gcgccgctat cgacgccgcc aaccgcgccc tgcccgccag
     4381 gcgtgcgctc accgccaaag aacgcgccaa cattctgcgc aactggttca atttgatgat
     4441 ggagcatcag gacgatttag cgcgcctgat gaccctcgaa cagggcaaac cactggccga
     4501 agcgaaaggc gaaatcagct acgctgcctc ttttattgag tggtttgccg aagaaggcaa
     4561 acgtatttat ggcgatacca ttcccggtca tcaggccgat aagcgcctga ttgttatcaa
     4621 gcagccgatt ggcgttaccg cagctatcac gccgtggaac ttcccggcgg cgatgattac
     4681 ccgtaaagcc ggtccggcgc tggcggcagg ctgcaccatg gtgctgaagc ccgccagtca
     4741 gacaccgttc tctgcgctgg cgctggcgga gctggcgatt cgcgcgggca ttgcggctgg
     4801 cgtgtttaac gtggtcaccg gttcggcagg cgcggtcggt aatgaactga ccagcaaccc
     4861 gctggtacgc aaactgtcgt ttaccggttc gaccgaaatt ggccgacagt taatggaaca
     4921 gtgcgcgaaa gacatcaaaa aagtgtcgct ggagctgggc ggcaacgcgc cgtttatcgt
     4981 ctttgacgat gccgatctcg ataaagccgt ggaaggcgcg ctggcctcga aattccgcaa
     5041 cgccgggcaa acctgcgtct gcgccaaccg tttggcgtgt atgaccgctt tgccgaaaaa
     5101 ttgcagcagg cggtgagcaa actgcacatc ggcgacgggc tggataaagg cgtcaccatc
     5161 gggccgctga tcgatgaaaa agcggtagca aaagtggaag agcatattgc cgatgcgctg
     5221 gagaaaggtg cgcgtgtggt ttgcggcgct aaagcggatg aacgcggcgg caacttcttc
     5281 cagccgacca ttctggtgga cgtgccggcc aacgccaaag tgtcgaaaga agagacgttc
     5341 ggccccctcg ccccgctgtt ccgctttaaa gatgaagccg atgtgattgc gcaagccaat
     5401 gacaccgagt ttggccttgc cgcctatttc tacgcccgtg atttaagccg cgtcttccgc
     5461 gtgggcgaag cgctggagta cggcatcgtc ggcatcaata ccggcattat ttccaatgaa
     5521 gtggccccgt tcggcggcat caaagcctcg ggtctgggtc gtgaaggttc gaagtatggc
     5581 atcgaagatt acttagaaat caaatatatg tgcatcggtc tttaactgga gaatgcgaat
     5641 gaacagcaat aaagagttaa tgcagcgccg cagtcaggcg attccccgtg gcgttgggca
     5701 aattcacccg attttcgctg accgcgcgga aaactgccgg gtgtgggacg ttgaaggccg
     5761 tgagtatctt gatttcgcgg gcgggattgc ggtgctcaat accgggcacc tgcatccgaa
     5821 ggtggtggcc gcggtggaag cgcagttgaa aaaactgtcg cacacctgct tccaagtgct
     5881 ggcttacgag ccgtatctgg agctgtgcga gattatgaat cagaaggtgc cgggcgattt
     5941 cgccaagaaa acgctgctgg ttacgaccgg ttccgaagcg gtggaaaacg cggtaaaaat
     6001 cgcccgcgcc gccaccaaac gtagcggcac catcgctttt agcggcgcgt atcacgggcg
     6061 cacgcattac acgctggcgc tgaccggcaa ggtgaatccg tactctgcgg gcatggggct
     6121 gatgccgggt catgtttatc gcgcgcttta tccttgcccg ctgcacggca taagcgagga
     6181 tgacgctatc gccagcatcc accggatctt caaaaatgat gccgcgccgg aagatatcgc
     6241 cgccatcgtg attgagccgg ttcagggcga aggcggtttc tacgccgcgt cgccagcctt
     6301 tatgcagcgt ttacgcgctc tgtgtgacga gcacgggatc atgctgattg ccgatgaagt
     6361 gcagagcggc gcggggcgta ccggcacgct gtttgcggtg gagcagatgg gcgtggcgcc
     6421 ggatcttacc acctttgcga aatcgatcgc tggcgggcgt caccgggcgc gcggaagtga
     6481 tggacgctgt tgcaccgggc ggtctgggcg gcacctatgc cggtaacccg attgcctgcg
     6541 tggctgcgct ggaagtgttg aaggtgttcg agcaggaaaa tctgctgcaa aaagccaacg
     6601 atctggggca gaagctaaaa gacggattgt tggcgatagc cgaaaaacac ccggagatcg
     6661 gcgacgtacg cgggctggga gcgatgattg ccatcgagct gtttgaagat ggcgatcaca
     6721 gcaaaccgga cgcaaaactc accgccggga tcgtggcacg cgcccgcgat aagggcctga
     6781 ttcttctctc ctgcggcccg tattacaacg tgctgcgcat ccttgtactg ctcaccattg
     6841 aagacgctca gatccgtcag ggtctggaga ttatcggtca gtgttttgat gaggcgaagc
     6901 agtagcaccg tccccatgca ggaggcgacg ctgcgcgtct tgtccggcct acgagaatcc
     6961 aggtcggata aggcgtttac gccgcatccg acaatctgta cgtgaacagg aataaatcta
     7021 tgtcggccgg ataatgcgga gccgctctcc ggcaaaaaga atcaataaca attaaacgcg
     7081 tgacccggcg cgggaaatgt cggggcgctc tcccaagtga cacactttcg agaggattca
     7141 ggatggggca atcatcgcaa ccacatgagt taggcggcgg gctgaaatca cgccacgtca
     7201 ccatgttgtc tattgccggt gttatcggcg caagtctgtt tgtcggttcc agcgtcgcca
     7261 tcgccgaagc gggcccggca gtattactgg cctatctgtt cgccgggcta ctggtggtta
     7321 tgattatgcg gatgttggcg gaaatggcgg ttgccacgcc cgataccggt tcgttttcca
     7381 cctatgccga taaagccatt ggtcgctggg cgggctatac catcggctgg ttgtactggt
     7441 ggttttgggt actggttatc ccgctggaag ccaacatcgc cgccatgatc ctgcactcgt
     7501 gggttccagg cattcccatc tggttatttt ccctcgtcat tacccttgcc ttaactggca
     7561 gtaatttatt aagcgttaaa aactacggcg aatttgagtt ctggctggcg ctgtgcaaag
     7621 tcatcgctat cctggccttt attttccttg gtgcagtcgc aattagcggt ttttaccctt
     7681 atgccgaagt gagcgggatc tcaagattgt gggatagcgg cggctttatg cccaacggct
     7741 tcggtgcggt attaagcgcg atgttgatca ccatgttctc gtttatgggc gcagaaattg
     7801 tcaccattgc cgccgcggaa tccgacacgc cggaaaaaca tattgcccgc gccactaact
     7861 cggttatctg gcgtatttct atcttctatt tgtgctctat ttttgtcgtc gtggcattaa
     7921 ttccgtggaa tatgcccgga ctaaaagccg tcggttctta tcgctcggta ctggaattgc
     7981 tcaatattcc ccatgcgaaa ttaatcatgg actgtgtgat attactttcc gtaaccagct
     8041 gcctgaactc ggcgctgtat accgcttcca ggatgctcta ctccttaagc cgtcgcggag
     8101 atgcgcctgc ggtaatgggt aaaatcaacc gcagtaaaac cccgtacgtg gcggtgttac
     8161 tctccaccgg cgcggcattc ttaacggtgg tggtgaacta ttacgtgcct gcgaaggtat
     8221 ttaaatttct gatcgacagc tccggcgcta tcgccctgct ggtttattta gtcatcgccg
     8281 tttcacagtt gcggatgcgc aaaattctgc gagcagaagg aagcgaaatt cgcttgcgca
     8341 tgtggcttta tccctggctc acctggctgg tcatcggctt tattaccttt gtgttggtag
     8401 tgatgctatt ccgcccggcg caacagttag aagtgatctc caccgactta ttagcaatag
     8461 ggattatctg taccgtgcca attatggcgg ctggaataag ctgataatgt ggcaaaaaac
     8521 acccgttcat aatacgcgct gataataatc aggagtcaca ccatgaccat tacgtctctg
     8581 gatggctatc gctggctgaa gaacgatatt attcgcggta attttcaacc ggatgaaaaa
     8641 ttacggatga gtttgctgac atcgcgttat gcacttggcg ttgggccgtt gcgggaagca
     8701 ctttctcaac tggtggcgga acggctggtc acggtggtga atcaaaaagg gtatcgggtg
     8761 gcgtctatgt cagagcagga gctgctcgat attttcgatg cccgcgccaa tatggaagcg
     8821 atgttagtga gtctggcgat tgcccgcggt agcgatgagt gggaggcaga cgttctcgca
     8881 aaagcgcatc tgctcagtaa gctggaagcc tgtgacgcca gcgagaaaat gcttgatgag
     8941 tgggatctgc gtcatcaggc gtttcataca gcaattgtgg cgggctgtgg ttctcactat
     9001 ttgctgcaaa tgcgtgaacg gttgtttgat ctggcggcgc gctatcgatt tatctggctg
     9061 cggcgaacgg tgctttcggt agaaatgctg gaggataaac acgatcagca ccagaccctg
     9121 actgcggcgg tactggcgcg agataccgcg cgcgccagtg agttaatgcg ccagcattta
     9181 ctgacgccaa ttcccattat ccagcaggcg atggctggca attaactact cttccggaat
     9241 acgcaacact tgccccggat aaattttatc cgggcttttt agcatcggtt tattcgcttc
     9301 gaagatttta ttgtacagat tagcgttacc gtagacctgt ttggaaatgg cactcagagt
     9361 gtcgccagac ttaacggtat aaaactggct ggcagtggct ggtgtcgccg ttttcacctg
     9421 atcatcaaca ctggcaatac cggaaatatt ccccaccgca acaaggattt tctccttcgc
     9481 ctcctgactc aggccgtcac cagtgaccgt cgctttgccg tcggcaattt gaatgttcac
     9541 tttatcggca tcaggtatac cggttttgct cagatgctcc tgcaccttct tcgcctgatc
     9601 gtctttatcg tgctgacctg taaccgcgtc ccagagtttt tctccggcat ctttcacaaa
     9661 attgaacaga cccatagcta cctcattcgt taacggaaac actcagaaag tgtagcagag
     9721 gaacgcggcg cgttaacgcc gcggggggga gcacaggttt aatcgcgggt ttgcacccag
     9781 aacgcgtgaa tcaaaccggg gatataccca agcagtgtca gcagaatatt aataatgaac
     9841 gcccaaccga accctttacc gagcagcacg ccgagcggcg gcagaatgat ggtgatgacg
     9901 attctccaga aacccatatg tactccctat aagaaaatta ctcattgttt aaaaagagat
     9961 tttatctctt aagcgtagta attttagcgg agcctgccag tttcagctta cgcttttact
    10021 ctcatttacg ctgctgaggc tggtatatgt tgcattttta gtttagagtt tacttaattt
    10081 agaaaatact taaataaata tgactgaact cgcgcaatta caggccagtg ccgaacaggc
    10141 agcggcctta ttgaaagcaa tgagccatcc taaacgattg ctgattctgt gcatgcttag
    10201 cggttccccc ggcaccagcg cgggagagct gacgcgcatt accggactga gtgcctctgc
    10261 gacatcacag catctcgctc gtatgcggga cgaagggctt atcgacagcc aacgggatgc
    10321 ccaacgcatt ctatattcca ttaaaaatga ggcggtaaat gccattatcg ccaccctgaa
    10381 aaatgtctat tgtccgtaag gagtcactat ggctttgaca accatttcgc cgcatgatgc
    10441 acaagaatta atcgcacgcg gcgcaaagtt aatcgatatt cgtgacgctg atgaatatct
    10501 tcgtgaacat attcctgaag cagatctggc tccattatcc gtgctggaac agtcaggtct
    10561 tccacctaaa ttacgtcgcg agcaaattat attccactgc caggcaggta aacgcaccag
    10621 taataacgcc gataaattag cagcgattgc cgcccccgca gaaatatttt tactcgaaga
    10681 taggattgat ggctggaaaa gagctggatt gccagtagcg gtaaataaat ctcaaccctt
    10741 gccgttaatg cgccaggtgc agatcgctgc gggtggttta atattaatcg gcgttgtact
    10801 gggttatacc gtaaatagcg gtttcttctt attaagtggc tttgttggtg ccgggttact
    10861 gtttgcagga atcagcggtt tttgtggaat ggcaaggttg ttagataaga tgccgtggaa
    10921 ccaacgagct tgagaagcga cgccggacgc gccctagcag cgacatccgg cctcagtaat
    10981 tagatcagga aatcgtcgag agatttacct tctgccagcg cctgagcaat tggcttcggt
    11041 gtacggccct gaccggtcca ggtcttagtt tcaccgttaa catcagtgaa tttatatttc
    11101 gccggacgcg gctggcgttt tttaccagca cgtggtgcag cagcagagct attacccaat
    11161 aactcttccg ggttaattcc gtcagctttc atcagctcca gccaggtgct aattttttcc
    11221 tgacgctcag ccagttcacg ctgctgctgt tcttcttctt cacgtctttc tttagtgaca
    11281 accctgaatt tttcgagcat ttcttcaaga acgtcaatgg agaattcgcg agccatcgca
    11341 cggagggttc gaatgttatt taaactttgt aacattacgg acataataaa gaaaaccttt
    11401 taacgccaaa acaaaaaagt atttcgtcgc gtagtgtaag cgatcactta ttatatttcc
    11461 acaaaattta atctatttac agtcctgcgc gagattattt cagctgttat tttctgaaac
    11521 tctcagaata atttcaagat tatatattag ccattttgat gagtaattta ggttattggt
    11581 gaacagagtg gcgctctctg ctcgctaact ccgcaagcct gataaaaccg aagtgaataa
    11641 aaatgcaata taacagaata aaagaaaaca cccctcactg gtgctttctg ctgttaatgt
    11701 acattttctg gcatcaaaaa tgctgtaaat gacccggtca cgacaaacac cgaattctct
    11761 acgcttatag cgttacctca cccccaaact ttcattagtg aaattaaagg caaggtcata
    11821 tccaattgat ttaattgaaa ataaatcata tcggcatgta aaaatccaca atgtacaaaa
    11881 aacgagctgt tacggaatat tttatctaca aaaactgact aaataaaagt ttttcactaa
    11941 ttgattagtc atagccagcg atatacgcta tgcgaaaatg cagatggcaa tgagatccac
    12001 tgctttcatc tccattaaca tcccattacg ctttattaag gagcattagc atgttctcac
    12061 cgcagtcacg cttgcgtcat gcagttgcag atacgttcgc gatggttgtt tactgttctg
    12121 tcgtgaacat gtgtattgaa gttttcctct ccggaatgag cttcgaacag tctttttatt
    12181 ccagattggt agcgattccg gtgaacatct taattgcatg gccatacggt atgtaccgcg
    12241 atctgtttat gcgcgcggca cgcaaagtta gcccgtcggg ctggataaaa aatctggctg
    12301 atatcctggc ttatgtgacg ttccagtcac cggtgtatgt ggcgatcttg ttagtggtgg
    12361 gcgcagactg gcatcagatt atggcggcgg tcagttcaaa catcgttgtt tcgatgttga
    12421 tgggggcggt ttatggctac ttcctcgatt attgccgccg actgtttaaa gtcagccgtt
    12481 accagcaggt aaaagcctga ctcttctttt cgcgactggc atcgccagtc gcgtctttaa
    12541 ctggcttcgc caaataaacc attcaaataa cgttcaagcg caacacgcga actgaagcca
    12601 tgcgggatac cgtaatgctc gtgtcgctcg cctgctaaat agagcggaaa ttgctggtaa
    12661 tgatcgcaag ttttaatatc ggaagcgggg tcagccagtg ttgaactgcg ttcttttaat
    12721 gttggatgaa ttaccagagc ggtacgtccc attcgcgctt cgcgattaac atagacataa
    12781 ttttccccac ggcggtaacc atacgctttc tgggttacca catcgacagt aaaaccgact
    12841 ttttcaagta cgcgcgccac ctcgtctggt cgtaaataca tatttgatcc tcgttatttt
    12901 caaccgcgg
//
LOCUS       DAJVSY010000122        12907 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.122, whole genome shotgun sequence.
ACCESSION   DAJVSY010000122 DAJVSY010000000
VERSION     DAJVSY010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12907
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.122"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(75..1697)
                     /gene="eutB"
                     /locus_tag="OQQ19_003052"
     CDS             complement(75..1697)
                     /gene="eutB"
                     /locus_tag="OQQ19_003052"
                     /EC_number="4.3.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutB"
                     /protein_id="HCS1804592.1"
                     /translation="MQNELQTALFQAFDTLNLQRVKTFSVPPVTLCGPGSVSSCGQQA
                     QTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQL
                     RESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAYEDDCVT
                     RLIQDDVNETAYNQIKNWSISELREYVLSDETSVDDIAFTRKGLTSEVVAAVAKICSN
                     ADLIYGAKKMPVIKKANTTIGIPGTFSARLQPNDTRDDVQSIAAQIYEGLSFGVGDAV
                     IGVNPVTDDVENLSRVLDTIYGVIDKFNIPTQGCVLAHVTTQIEAIRRGAPGGLIFQS
                     ICGSEKGLKEFGVELAMLDEARAVGAEFNRIAGENCLYFETGQGSALSAGANFGADQV
                     TMEARNYGLARHYDPFIVNTVVGFIGPEYLYNDRQIIRAGLEDHFMGKLSGISMGCDC
                     CYTNHADADQNLNENLMILLATAGCNYIMGMPLGDDIMLNYQTTAFHDTATVRQLLNL
                     RPSPEFERWLESMGIMANGRLTKRAGDPSLFF"
     gene            complement(1687..2522)
                     /gene="eutJ"
                     /locus_tag="OQQ19_003053"
                     /pseudo
     CDS             complement(1687..2522)
                     /gene="eutJ"
                     /locus_tag="OQQ19_003053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311343.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein EutJ"
     gene            complement(2533..3936)
                     /locus_tag="OQQ19_003054"
     CDS             complement(2533..3936)
                     /locus_tag="OQQ19_003054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase EutE"
                     /protein_id="HCS1804593.1"
                     /translation="MNQQDIEQVVKAVLLKMQSSDTPPAAVHEMGVFASLDDAVAAAK
                     VAQQGLKSVAMRQLAIAAIREAGEKHARDLAELAVSETGMGRVEDKFAKNVAQARGTP
                     GVECLSPQVLTGDNGLTLIENAPWGVVASVTPSTNPAATVINNAISLIAAGNSVIFAP
                     HPAAKKVSQRAITLLNQAIVAAGGPENLLVTVANPDIETAQRLFKFPGIGLLVVTGGE
                     AVVEAARKHTNKRLIAAGAGNPPVVVDETADLARAAQSIVKGASFDNNIICADEKVLI
                     VVDSVADELMRLMEGQHAVKLTAEQAQQLQPVLLKNIDERGKGTVSRDWVGRDAAKIA
                     AAIGLNVPQETRLLFVETTAEHPFAVTELMMPVLPVVRVANVADAIALAVKLEGGCHH
                     TAAMHSRNIENMNQMANAIDTSIFVKNGPCIAGLGLGGEGWTTMTITTPTGEGVTSAR
                     TFVRLRRCVLVDAFRIV"
     gene            complement(3948..4235)
                     /gene="eutN"
                     /locus_tag="OQQ19_003055"
     CDS             complement(3948..4235)
                     /gene="eutN"
                     /locus_tag="OQQ19_003055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutN"
                     /protein_id="HCS1804594.1"
                     /translation="MKLAVVTGQIVCTVRHHGLAHDKLLMVEMIDPQGNPDGQCAVAI
                     DNIGAGTGEWVLLVSGSSARQAHKSETSPVDLCVIGIVDEVVSGGQVIFHK"
     gene            complement(4342..4635)
                     /gene="eutM"
                     /locus_tag="OQQ19_003056"
     CDS             complement(4342..4635)
                     /gene="eutM"
                     /locus_tag="OQQ19_003056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutM"
                     /protein_id="HCS1804595.1"
                     /translation="MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAM
                     VRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGLKGDSSNL"
     gene            complement(4674..5690)
                     /gene="pta"
                     /locus_tag="OQQ19_003057"
     CDS             complement(4674..5690)
                     /gene="pta"
                     /locus_tag="OQQ19_003057"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HCS1804596.1"
                     /translation="MIIERCRELALRAPARVVFPDALDQRVLKAAQYLHQQGLATPIL
                     VANPFELRQFALSHGVAMDGLQVIDPHGNLAMREEFAHRWLARAGEKTPPDALEKLTD
                     PLMFAAAMVSAGKADVCIAGNLSSTANVLRAGLRIIGLQPGCKTLSFIFLMLPQYSGP
                     ALGFADCSVVPQPTAAQLADIALASAETWRAITGEEPRVAMLSFSSNGSARHPCVANV
                     QQATEIVRERAPKLVVDGELQFDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIG
                     YNIAQRLGGYRAVGPLIQGLAVPMHDLSRGCSVQEIIELALVAAVPRQTEVNRESSLQ
                     TLVE"
     gene            complement(5680..6489)
                     /gene="eutT"
                     /locus_tag="OQQ19_003058"
     CDS             complement(5680..6489)
                     /gene="eutT"
                     /locus_tag="OQQ19_003058"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001425897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization cob(I)yrinic acid
                     a,c-diamide adenosyltransferase EutT"
                     /protein_id="HCS1804597.1"
                     /translation="MKDFITEAWLRANHTLSEGAEIHLPADSRLTPSARELLESRHLR
                     IKFIDEQGRLFVDDEQQKPQPVHGLTSSDEHPQACCELCRQPVAKKPDTLTHLSAEKM
                     VAKSDPRLGFRAVLDSTIALAVWLQIELAEPWQPWLADIRSRLGNIMRADALGEPLGC
                     QAIVGLSDEDLHRLSHQPLRYLDHDHLVLEASHGRDAALLNLLRTKVRETETVAAQVF
                     ITRSFEVLRPDILQALNRLSSTVYVMMILSVTKQPLTVKQIQQRLGERNDY"
     gene            complement(6486..7187)
                     /gene="eutQ"
                     /locus_tag="OQQ19_003059"
     CDS             complement(6486..7187)
                     /gene="eutQ"
                     /locus_tag="OQQ19_003059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization acetate kinase EutQ"
                     /protein_id="HCS1804598.1"
                     /translation="MKKLITANDIREAHARGEQAMSVVLRASIITPEAREVADLLGFT
                     ITECDESIPVTASVPASVPADKTESQRIRETIIAQLPEGQFTESLVAQLMEKVMKEKQ
                     SLEQGAMQPSFKSVTGKGGIKVIDGSSVKFGRFDGAEPHCVGLTDLVTGDDGSSMAAG
                     FMQWENAFFPWTLNYDEIDMVLEGVLHVRHEGQTMIAKAGDVMFIPKGSSIEFGMTSS
                     VKFLYVAWPANWQSL"
     gene            complement(7162..7641)
                     /gene="eutP"
                     /locus_tag="OQQ19_003060"
     CDS             complement(7162..7641)
                     /gene="eutP"
                     /locus_tag="OQQ19_003060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization acetate kinase EutP"
                     /protein_id="HCS1804599.1"
                     /translation="MKRIAFVGSVGAGKTTLFNALQGNYTLARKTQAVEFNDKGDIDT
                     PGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTD
                     MPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQEEAGEKTHHSE"
     gene            complement(7654..7989)
                     /gene="eutS"
                     /locus_tag="OQQ19_003061"
     CDS             complement(7654..7989)
                     /gene="eutS"
                     /locus_tag="OQQ19_003061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311351.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutS"
                     /protein_id="HCS1804600.1"
                     /translation="MDKERIIQEFVPGKQVTLAHLISHPGEELAKKIGVPDAGAIGIM
                     TLTPGETAMIAGDLALKAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLN
                     YTLCEMTKS"
     gene            complement(8281..10560)
                     /gene="maeB"
                     /locus_tag="OQQ19_003062"
     CDS             complement(8281..10560)
                     /gene="maeB"
                     /locus_tag="OQQ19_003062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxaloacetate-decarboxylating
                     malate dehydrogenase"
                     /protein_id="HCS1804601.1"
                     /translation="MDDQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVA
                     APCLEIEKDPLKAYKYTARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFA
                     GIDVFDIEVDELDPDKFIEVVAALEPTFGGINLEDIKAPECFYIEQKLRERMNIPVFH
                     DDQHGTAIISTAAILNGLRVVEKNISDVRMVVSGAGAAAIACMNLLVALGLQKHNIVV
                     CDSKGVIYQGREPNMAETKAAYAVVDDGKRTLDDVIEGADIFLGCSGPKVLTQEMVKK
                     MARAPMILALANPEPEILPPLAKEVRPDAIICTGRSDYPNQVNNVLCFPFIFRGALDV
                     GATAINEEMKLAAVRAIAELAHAEQSEVVASAYGDQDLSFGPEYIIPKPFDPRLIVKI
                     APAVAKAAMESGVATRPIADFDVYIDKLTEFVYKTNLFMKPIFSQARKAPKRVVLPEG
                     EEARVLHATQELVTLGLAKPILIGRPNVIEMRIQKLGLQIKAGVDFEIVNNESDPRFK
                     EYWTEYFQIMKRRGVTQEQAQRALISNPTVIGAIMVQRGEADAMICGTVGDYHEHFSV
                     VKNVFGYRDGVHTAGAMNALLLPSGNTFIADTYVNDEPDAEELAEITLMAAETVRRFG
                     IEPRVALLSHSNFGSSDCPSSSKMRQALELVRDRAPDLMIDGEMHGDAALVEAIRNDR
                     MPDSPLKGSANILVMPNMEAARISYNLLRVSSSEGVTVGPVLMGVAKPVHVLTPIASV
                     RRIVNMVALAVVEAQTQPL"
     gene            10849..11799
                     /gene="tal"
                     /locus_tag="OQQ19_003063"
     CDS             10849..11799
                     /gene="tal"
                     /locus_tag="OQQ19_003063"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HCS1804602.1"
                     /translation="MNELDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGL
                     SQYEHLIDDAIAWGKKNGKTQEQQVVAACDKLAVNFGAEILKIVPGRVSTEVDARLSF
                     DKEKSIEKARHLVDLYQQQGVEKSRILIKLASTWEGISAAEELEKEGINCNLTLLFSF
                     AQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHHYE
                     TIVMGASFRRTEQILALTGCDRLTIAPNLLKELQEKVSPVVRKLIPPSQTFPRPAPMS
                     EAEFRWEHNQDAMAVEKLSEGIRLFAVDQRKLEDLLAAKL"
     gene            11819..>12907
                     /locus_tag="OQQ19_003064"
     CDS             11819..>12907
                     /locus_tag="OQQ19_003064"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416960.1"
                     /note="catalyzes the formation of ribose 5-phosphate and
                     xylulose 5-phosphate from sedoheptulose 7-phosphate and
                     glyceraldehyde 3-phosphate; can transfer ketol groups
                     between several groups; in Escherichia coli there are two
                     tkt genes, tktA expressed during exponential growth and
                     the tktB during stationary phase; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HCS1804603.1"
                     /translation="MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFL
                     KHNPTDPTGYDRDRFILSNGHASMLLYSLLHLTGYDLPLEELKNFRQLHSKTPGHPEI
                     GYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNQPDHEIVDHFTYVFMGDGCLMEG
                     ISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGH
                     DPQAVKEAILEAQSVKDKPSLIICRTVIGFGSPNKAGKEEAHGAPLGEEEVALARQKL
                     GWHHPPFEIPKEIYHAWDAREKGEKAQQSWNEKFAAYKKAHPQLAEEFTRRMSGDLPK
                     DWEKTTQKYINELQANPAKIATRKASQNT"
BASE COUNT         2879 a         3696 c         3354 g         2978 t
ORIGIN      
        1 tcccattgac gccatcacgc tgcgtacaat ttcttcaatc tgtttttgat ccatgatgtg
       61 ttatctccgc gtcatcagaa gaacagtgac ggatcgcccg cccgtttggt caggcgaccg
      121 tttgccataa tgcccatgct ttccagccag cgttcaaact ctggtgacgg gcgcaggttg
      181 agtaactgac gcacagtggc ggtatcgtgg aatgcggtgg tctggtagtt gagcatgatg
      241 tcatcaccca gcggcatccc catgatgtag ttgcagcctg cggtggcgag caggatcatc
      301 aggttttcgt tgaggttctg gtcagcgtca gcgtggttgg tgtagcagca gtcacagccc
      361 atagagatgc cgctcagctt gcccataaag tgatcttcta agccagcacg gataatctgg
      421 cggtcgttgt agagatactc cggcccaata aagccgacca cggtgttgac gataaacgga
      481 tcgtaatgac gcgccagccc atagttacgt gcttccatcg tcacctggtc agcgccgaag
      541 ttagcgccag cggatagcgc agagccttgt ccggtttcga agtagaggca gttttccccg
      601 gcgatacggt tgaactctgc acccactgcg cgcgcttcgt cgagcatcgc cagttccacg
      661 ccaaactctt tcagcccttt ttcgctgcca cagatactct ggaaaatcag tccgccaggc
      721 gcgccgcgac gaatcgcttc gatctgggtg gtgacgtgcg ccagtacgca gccctgagtt
      781 gggatgttga atttgtcgat cacgccataa atggtatcca gcacgcggct taagttttcc
      841 acgtcgtcag ttaccgggtt gacgccgatc accgcatcgc ccaccccgaa ggaaagccct
      901 tcgtagattt gcgcggcgat actttgcacg tcgtcacgag tgtcatttgg ctgcaaacgg
      961 gcgctgaagg tgcccggaat accgatggtg gtattggcct ttttgattac cggcattttc
     1021 ttcgcgccgt agatcaggtc cgcgttggag caaatcttcg ctaccgccgc gaccacttcc
     1081 gaggtcagcc ctttgcgggt aaaggcaatg tcgtccacgc tagtttcatc gctcagcaca
     1141 tactcacgca gttcgctgat gctccagttt ttaatctggt tgtaggccgt ttcgttaaca
     1201 tcgtcctgaa tcagccgcgt cacgcagtca tcttcatagg caatcagcgg caagcgcggt
     1261 tgcagaacgc tggtttctga catctctgcc agcgtgctat ccgggttcgt caccagcaac
     1321 gccacggctt tcgccgcatc cagcaccgag ccgccgccaa atgcgatcac cccatcacag
     1381 cctgactcac gcaactgcgc cacggctgca cacacgtcgg tgatgcacgg ttcgcccacc
     1441 ggacatggcc agagcgtcat ggcgatgcct ttaacagcca ggctgcgcgt cagcccggcg
     1501 gtcatccctg cctgatgcaa aaagctgtct gccatcacga acagatgttt cagcccacgc
     1561 gtttgcgctt gctgtccgca actgctcacc gagcccggac cgcaaagcgt caccggtgga
     1621 acgctaaatg tttttacccg ttgcagattc agggtatcga acgcctgaaa gagcgcggtc
     1681 tgcaattcat tttgcatata gcccctccgc tttctctcgc ccactactgg cgatcgccag
     1741 cggggtcata aacaaactgt gctgcggtaa atgcacctgt aacgccggga attgtttgcg
     1801 aaacagttcc gccacgcccg gttgcataca agagccgccc gccagccata aatcagtaat
     1861 gccctgccct tcaatatgcc gggcgacaat gtccgccatt ttttcgtaca ccggtttcac
     1921 cgtaggccaa atctcttcac cgtgaccgcg cttgtactgc tccgcctctt ccagcgaaat
     1981 acggcgattt ccggcgagag tcagagagat gtgatgtccg ccggttgctt catccgccga
     2041 gtacgtcacc ttgccctttt tcacgatggc aatgccggta gtgccgccgc cgatatccac
     2101 tacaccggcg ttgtccagtt gcagcagctc cgcaactgcg gttggctcat ccagcacatg
     2161 gccacttcca gtccagcaga ctccagcacg ttgatggaaa tacgcgggtc cgtacctgga
     2221 ggaaatgaag tcgccgcatg gctaaaacgg cgaccgaatt gctgctcgag cgtgtcgaga
     2281 tggcgacgaa caatggtgac agcgccgaag aaatcccaga cgatgccgtc gcggaccaca
     2341 tcggcccagt cgaggcatac cgccaccggc tgaccgtcgc ggtcgacaac catcgacacc
     2401 acatcgcagg tgcccagatc cacccccagc cacagcggag attccgtcgc ggcgggcgtc
     2461 tggttacaca gcgttgccgc cgtttgcaga cgtggggtga gccattgttc gtcgtgcgcc
     2521 atctgttact ccttaaacaa tgcgaaacgc atcgactaat acacagcgac gcagacggac
     2581 aaacgtacgc gcgctggtta ccccttcacc ggttggcgtg gtgatggtca tggtggtcca
     2641 gccttccccg cccagcccca gcccggcaat gcacggtccg ttcttaacga aaatgctggt
     2701 atcaatagca ttcgccatct ggttcatgtt ttcgatgttg cgcgagtgca ttgccgccgt
     2761 gtggtggcaa ccgccttcca gtttcaccgc cagcgcaatg gcatccgcca cgttggcgac
     2821 gcgcacgacg ggcagcaccg gcatcatcag ttcggtcacg gcaaacggat gttctgcagt
     2881 ggtttccaca aacagcaaac gcgtttcttg cggcacgttc aggccgattg ccgccgcgat
     2941 tttcgccgca tcgcgaccaa cccagtcacg gctgacggtg ccttttccgc gctcgtcgat
     3001 atttttcagc aacaccggtt gcagctgctg cgcctgttct gcggtcagtt tcaccgcgtg
     3061 ctggccttcc atcagacgca tcagttcatc ggctacgcta tcaacaacaa tcagtacctt
     3121 ttcgtcggca caaatgatgt tgttatcgaa agaagcgcct ttgacgatgg actgagcggc
     3181 acgggcgagg tcggcggttt catccaccac taccggcggg ttgccagcgc ctgcggcaat
     3241 cagacgttta ttggtgtgtt tacgcgccgc ttctactacc gcttcgccgc cggtcaccac
     3301 cagaaggccg atgcccggaa acttgaacaa acgctgcgcg gtttcgatat ccggatttgc
     3361 cacagtaacc agtaagtttt ccggcccgcc tgcggcaaca atcgcctggt tgagcagcgt
     3421 gatcgcccgc tgggagactt ttttcgccgc cggatgcggg gcaaaaatga cgctgttgcc
     3481 cgcggcaatc aggctgatgg cgttattaat tacggttgcc gccgggttag tggacggagt
     3541 taccgaagcc accacgcccc agggcgcgtt ttcaattaaa gtcaggccgt tgtcgccggt
     3601 cagcacctgc ggagagagac actcaacgcc tggcgtgccg cgcgcctgag cgacgttttt
     3661 ggcaaattta tcttcaacgc ggcccatgcc ggtttcactg acggcaagtt ccgctaaatc
     3721 tctggcgtgt ttttcgcctg cctcacgaat ggcagcaatg gctaactggc gcattgccac
     3781 gctttttaac ccttgctggg cgactttggc tgccgcaacg gcgtcatcca gggacgcgaa
     3841 aacgcccatc tcatgaacgg cggcgggcgg cgtgtcactg ctttgcattt tcagcagtac
     3901 cgctttcacc acctgttcaa tatcctgttg attcatgatg ttctgcctta tttgtggaaa
     3961 attacctgac cgccagacac cacctcatcg acaatgccaa tcacgcacag atcgaccggt
     4021 gacgtttcgc ttttatgcgc ctggcgggcg gaactgccac tcaccagtaa cacccactcc
     4081 ccggttcccg cgccaatatt gtcgatggcg acggcgcatt gcccgtcagg attaccttgt
     4141 ggatcaatca tttccaccat cagcaatttg tcatgcgcca gtccgtgatg gcgtacggta
     4201 caaacaattt gtccagtgac gactgccagt ttcatacccg cctccgtggc gtatttcagg
     4261 taaaagctcc ccctaccctc cgcagaaggt aaaatgaaaa aggagagagc gtaacgcccg
     4321 aatcgacgtc acacagggtg attacaggtt gctgctatcg cctttcaggc cgatcgggaa
     4381 gacttcttcc aggtcgccgt gcggacgcgg gataacgtgt acagatacca gctcgccgat
     4441 acgctgtgcc gctgcggcac ctgcatcggt cgcggcttta caggctgcaa catcaccacg
     4501 aaccatggca gtacacaggc cgccgccaat ctgcttaaca ccaaccagct tgacgcgcgc
     4561 agctttcacc atcgcgtcag aagcctcaat cagtgcaacc aggccccggg tttcgatcat
     4621 tcctaatgct tccattgtgc tttcctcttt atcagggtcc agaacgggac cgttcattca
     4681 accagtgttt gtaaactgct ttcgcggttc acttctgtct gacgcggcac agctgccacc
     4741 agcgccagct cgataatttc ctgcacgcta caaccacgag agagatcgtg catcggcacg
     4801 gcaagtcctt gtatcagtgg cccgacggca cgatatccgc cgagtcgttg tgcgatgttg
     4861 taaccaatat ttccggcttc cagcgacgga aaaaccatca cattggcctt gccctgtagc
     4921 gggctggcag gcgctttttg cgccgccact tccggcacga aggcggcgtc aaactgtaac
     4981 tcgccatcca ccaccagctt tggtgcgcgc tcacggacga tttctgtcgc ctgctggacg
     5041 ttagcaacac aggggtgacg ggcgctacca ttgctggaaa acgacagcat cgccacgcgc
     5101 ggctcttctc cggtgatggc gcgccaggtt tcggcactgg caagcgcgat atccgccagc
     5161 tgcgccgccg tcggctgtgg caccacgctg caatcggcaa agcccaacgc cgggccgctg
     5221 tactgtggca acatcaggaa aatgaaagag agcgttttac agcctggctg caagccgata
     5281 atgcgtaatc cggcacgcag cacatttgcc gtggaagaga ggttgcctgc gatacagaca
     5341 tccgctttac cggcgctgac cattgctgcg gcgaacatca gagggtcggt aagtttttcc
     5401 agcgcatccg gcggcgtttt ttcgcccgcg cgggccagcc agcgatgagc aaattcttcc
     5461 cgcattgcga ggttgccatg cggatcaatc acctgtagcc cgtccatcgc cacgccgtga
     5521 ctgagcgcaa actgacgaag ttcaaacgga ttggcgacca gaatgggcgt tgccagacct
     5581 tgttgatgta aatattgcgc ggctttcagc acacgttgat ctaacgcatc cggaaaaacc
     5641 actctggcgg gcgctcgcaa cgccagttca cgacaacgtt caataatcat tgcgttcccc
     5701 cagtcgttgt tggatctgct tcaccgttag cggctgcttc gttacgctca ggatcatcat
     5761 cacgtagacc gtgctggaaa ggcggttcag cgcctgcaaa atgtccgggc gtaatacttc
     5821 aaagctgcgg gtgataaaga cctgcgccgc tacggtttcg gtttcccgca ctttggtgcg
     5881 tagcagattg agcaacgcag catcgcgccc gtggctggct tccagcacca gatgatcgtg
     5941 gtcgagatag cgcagcggct gatgagaaag ccgatgcaga tcttcgtcag aaagcccgac
     6001 aatcgcctgg cagcccagcg gttcccccag cgcatcggcg cgcataatgt tgccaagacg
     6061 cgaacggata tccgccagcc acggctgcca cggttccgcc agttcaattt gcagccacac
     6121 tgccagcgca atggtgctgt cgagaaccgc gcgaaaaccc agacgcggat cgcttttggc
     6181 gaccattttt tccgccgaca ggtgagtcag cgtatccggc ttttttgcca ccggctggcg
     6241 gcacagttcg cagcacgcct gcggatgttc atcgctactg gtcagcccat gaacgggctg
     6301 cggcttctgc tgttcatcgt caacaaacag gcggccctgc tcgtcaataa acttgatgcg
     6361 cagatggcgg ctttccagca actcccgggc agagggcgtc aggcgactgt ccgcagggag
     6421 atggatctct gcgccttcgc tgagcgtatg gttcgctctt agccatgctt cggtgatgaa
     6481 atctttcata gggattgcca gttagccggc caggcgacat acaggaattt cacgctggat
     6541 gtcataccaa attcgatgct ggagcctttc gggataaaca tcacgtcgcc tgctttggcg
     6601 atcatggttt ggccttcgtg gcgaacatgc agcacccctt ccagcaccat gtcgatttcg
     6661 tcgtagttca gggtccacgg gaagaatgcg ttctcccact gcataaaacc ggcggccatg
     6721 ctgctgccgt cgtctccggt cacaagatca gtcaagccca cgcaatgcgg ctctgcgccg
     6781 tcgaaacgac caaacttgac gctgctgcca tcaatcactt tgatgccgcc tttgccggtc
     6841 accgatttga agctcggctg cattgcgccc tgctccagcg actgtttttc cttcatcact
     6901 ttttccatca gctgtgcgac caggctttcg gtaaactggc cttccggcag ctgggcaatg
     6961 atggtttcgc ggatgcgctg gctttcggtt ttgtcggctg gcacgctggc gggcacggac
     7021 gccgttaccg ggatcgattc atcacattcg gtgatggtaa aacccagtag atccgccact
     7081 tcacgggctt ccggggtaat aatgctggcg cgcagaacca cggacattgc ctgttcgccg
     7141 cgcgcgtgtg cttcacgaat atcattcgct gtgatgagtt ttttcacctg cttcctcctg
     7201 tttggtgaga gatgccagat aatccaccag ttgctgcacg ctttgcgggt cgtggctgtt
     7261 tagctcgaaa atcggctctt cgaaacccgt ctcaagcaat aactttcgcg ttgcggcgac
     7321 gtcagcatct ggcatgtccg ttttactgat gacggcaatt tgccgtttgc tgacgccaat
     7381 atccagcaac ccggcaggca accgactttc cgggtcattt gcgccatgga catagatcag
     7441 catgtctaca tcctgtagcg tggtaattaa ggcgtgatac cagcggggat ggctaaaata
     7501 ttcacccggc gtatcaatat cgcccttatc attaaattcc acggcctgtg tttttctggc
     7561 gagggtataa ttcccctgca acgcattaaa taacgttgtt tttcctgccc cgacactacc
     7621 cacaaacgca attcgtttca tgaatgcctc gtattaactt ttggtcattt cacaaagcgt
     7681 ataatttaat aagcgaccta aaccgctgac ggtttgtgat aacgcttctt ctactgcgcc
     7741 caccgagcca taaatcacca atgcaccgct gaagcggtcg agaaaaccga tatgcacatc
     7801 agcggctttc agcgctaaat caccggcgat catcgccgtt tcgccgggag ttagcgtcat
     7861 aatgccaatt gcgcccgcat ccggaacgcc gattttcttc gccagttcct caccgggatg
     7921 cgagatgaga tgcgccagtg tgacctgttt gccgggcaca aattcctgaa tgatgcgttc
     7981 tttatccatg agtcgccgcc tgtgaaaaac tttcgtgtat cgtgacaatt tttcgtcaga
     8041 gtaaataaca aaattcggca agcgcgttta aaaggtgagg tagatcacta agaatggaga
     8101 gatattcgct gtggtgcata aactttcata tgcaacgcat gaatataaat aaaataatat
     8161 cgagatatta tatagactgc ttttttatta ttcgcaaact cagtaataag ctttactaat
     8221 atattgcagc caaaccgctt accctgaata ttcagggtaa gcgtgagagt taaaaaagaa
     8281 ttacagcggt tgggtttgcg cttcaaccac ggccagcgcc accatgttga cgatacgacg
     8341 caccgatgcg atcggcgtta acacgtgaac cggtttcgcc acgcccatca gcaccggacc
     8401 gacagtcaca ccttccgagc tggaaacgcg cagtaagttg taactaatgc gggcagcttc
     8461 catgttcggc atcaccagaa tattggcaga acctttcaaa gggctgtccg gcatacggtc
     8521 gttgcgaatc gcttccacca gcgctgcatc gccgtgcatt tcaccatcaa tcatcagatc
     8581 tggcgcacga tccctgacca gttccagcgc ctgacgcatt ttgctcgacg acgggcagtc
     8641 agaagaacca aagttggagt gcgacaacag agcaacgcgc ggctcaatac caaaacgacg
     8701 gacagtttct gccgccatca aggtgatctc cgccagctct tctgcgtctg gttcgtcatt
     8761 gacgtaggta tcggcaataa aggtgttacc actcggcagc agcagcgcgt tcattgcacc
     8821 tgcggtgtga acgccatcgc gataaccaaa gacatttttc accacgctaa aatgttcatg
     8881 ataatcgccc accgtaccgc agatcattgc atcggcttcc ccacgctgaa ccatgatcgc
     8941 gccgatcact gtcgggttac tgatcagcgc ccgctgcgcc tgttcctgag tgacaccgcg
     9001 acgcttcatg atctggaagt attcggtcca gtactcttta aagcgcggat cggattcgtt
     9061 attgacgatc tcaaaatcaa cgcccgcttt gatctgcaag cccagtttct gaatgcgcat
     9121 ttcgatcacg ttcggacgac cgataaggat cggtttcgcc agtcccagcg ttaccagttc
     9181 ctgagtggca tgcagaacgc gcgcctcttc cccttctggc agaacaacgc gcttcggcgc
     9241 tttgcgagcc tgggagaaaa tcggcttcat aaacaggttg gttttgtaaa cgaactcagt
     9301 cagcttgtcg atgtagacgt cgaaatcagc aatcggacgc gtcgccacgc ccgactccat
     9361 cgcggcttta gcgaccgcag gagcgatctt aacgatcaag cgcggatcaa acggttttgg
     9421 aatgatgtat tccggaccaa agctcagatc ctgatcgcca tacgctgaag ccaccacttc
     9481 gctctgttcc gcatgggcga gttctgcaat cgcacgtacc gccgccagtt tcatctcttc
     9541 gttgatggcg gttgcgccaa cgtccagcgc gccacggaag atgaacggga agcacaggac
     9601 gttgttcacc tggttcggat agtcagaacg accggtgcaa atgatggcat ccggacgcac
     9661 ttctttcgcc agcggcggca gaatttccgg ttccgggttc gccagcgcca ggatcattgg
     9721 cgcacgagcc attttcttca ccatttcctg ggtcagcact ttcgggccgg aacatccgag
     9781 gaaaatatcc gcgccttcaa tcacatcatc gagggtacgt ttgccgtcgt ccaccaccgc
     9841 atatgcggct ttggtttccg ccatgtttgg ctcacggccc tgatagataa cgccttttga
     9901 atcgcaaacc acgatgttat gtttttgcag acccagcgct accagcaggt tcatacaggc
     9961 gattgctgcg gcacccgcgc cggaaaccac catccgcacg tcggagatgt ttttctccac
    10021 cacgcgcaag ccgttgagga tggcggcagt gctgatgatt gccgtgccgt gctgatcgtc
    10081 gtggaatacc ggaatattca tccgctcgcg cagtttctgt tcaatataga aacattctgg
    10141 cgctttaatg tcttcgaggt tgattccgcc gaaggtcggt tcgagcgcag cgacaacttc
    10201 aataaatttg tccgggtcga gttcatcaac ttcaatgtca aatacatcaa tcccggcgaa
    10261 tttcttaaac agaacgccct tgccttccat caccggtttg ccagccagcg cgccaatgtt
    10321 gcctaacccc agcaccgccg taccgttaga gatcaccgcc accaggttac cgcgcgcggt
    10381 atatttgtag gcttttaacg ggtctttttc gatttcaaga caaggtgcgg caacgcctgg
    10441 tgagtaggcc agcgccagat cgcgctgcgt tgccagaggc ttggttggag aaacctggat
    10501 tttccctgga actggaaatt catggaaatc aagtgcactt tgttttaact ggtcatccat
    10561 ttggttgttc ctttcacgta acgttcacaa ataaagtgtg tgggcaacag cccctgccca
    10621 caacgtggcg cacattatta ccccgccgga gtctacagac tttgagcaag tccaaactct
    10681 caccattaat ataatgtttt ggtaataatc ctataacact gatgttacct gcttaatcca
    10741 gcaataccat gcctgtctgc tatgcttttt tgatgcgttt agcgaaattt ctcagaagtg
    10801 tgaattaacg cactcatcta acactttact tttcaaggag tatttcctat gaacgagtta
    10861 gacggcatca aacagttcac cactgtcgtg gcagacagcg gcgatattga gtccattcgc
    10921 cattatcatc cccaggatgc caccaccaat ccttcgctgt tgctcaaggc tgccggatta
    10981 tcacaatatg agcatttaat agacgatgct atcgcctggg gtaaaaaaaa tggcaagacc
    11041 caggaacaac aggtggtcgc agcgtgtgac aaactggcgg tcaatttcgg tgctgaaatt
    11101 ctcaaaatcg tacccggtcg cgtgtcaaca gaagttgatg cacgcctctc ttttgataaa
    11161 gaaaagagta ttgagaaggc gcgccatctg gtggacttgt atcagcaaca aggcgttgag
    11221 aaatcacgca ttctgatcaa actggcttcg acctgggaag gaattagcgc ggcagaagag
    11281 ctggaaaaag aaggtattaa ctgcaacctg acgctgctgt tttcttttgc ccaggcgcgg
    11341 gcctgtgcgg aagcaggcgt ttttctgatt tcgccgtttg tcgggcgtat ttatgactgg
    11401 tatcaggcac gcaagccgat ggacccgtat gtggtggaag aagatccggg cgttaaatcg
    11461 gtgcgcaata tctacgacta ctataagcaa caccactatg aaaccattgt gatgggcgcg
    11521 agcttccgtc gcaccgaaca aatcctcgcc ttaaccggct gcgatcgact gactatcgca
    11581 ccgaatttgc tgaaggagct gcaggaaaaa gtttcgccag tggtacgtaa attaatccca
    11641 ccttctcaga cgttcccacg cccagctccc atgagcgaag cggagttccg ttgggagcac
    11701 aatcaggatg cgatggcggt agaaaaactg tctgaaggca ttcgtctgtt cgccgttgat
    11761 caacgcaaac tggaagatct tcttgccgcc aaactataaa ccagccacgg agtgttatat
    11821 gtcccgaaaa gaccttgcca atgcgattcg cgcactcagt atggatgcgg tacaaaaagc
    11881 caactctggt catcccggcg cgccgatggg catggctgat attgccgaag tgctgtggaa
    11941 cgattttctt aaacataacc ctaccgaccc aaccgggtat gatcgcgacc gctttattct
    12001 ttccaacggt cacgcgtcga tgctgctcta cagtttgctg catctgaccg gttacgacct
    12061 gccgctggaa gagctgaaga acttccgtca gttgcattcg aaaaccccag gccacccgga
    12121 gattggttat acgcccggtg ttgaaaccac caccggtcca cttggacaag gtttggcgaa
    12181 cgccgtcgga ctggcgatag cagagcgtac actggcggcg cagtttaatc agccggatca
    12241 tgaaattgtc gatcacttca cctatgtgtt tatgggcgac ggctgcctga tggaaggtat
    12301 ttcccacgaa gtctgttcgc tggcgggcac gctaggactg ggcaagctga ttggttttta
    12361 cgatcacaac ggtatttcga ttgatggaga aaccgaaggc tggtttaccg acgatacggc
    12421 aaaacgtttt gaagcctatc actggcatgt gatccatgaa atcgacggtc acgatccgca
    12481 ggcggtgaag gaagcgatcc ttgaagcgca aagcgtgaaa gataagccgt cgctgattat
    12541 ctgccgtacg gtgattggct ttggttcgcc gaataaagca ggtaaggaag aggcgcacgg
    12601 cgcaccactg ggggaagaag aagtggcgct ggcacggcaa aaactgggct ggcaccatcc
    12661 gccatttgag atccctaaag agatttatca cgcctgggat gcccgtgaaa aaggcgaaaa
    12721 agcgcagcag agctggaatg agaagtttgc cgcctataaa aaggctcatc cgcaactggc
    12781 agaagagttt acccgacgga tgagcggtga tttaccgaag gactgggaga aaacgactca
    12841 gaaatatatc aatgagttac aggcaaatcc ggcgaaaatc gctacccgta aggcttcgca
    12901 aaatacg
//
LOCUS       DAJVSY010000123        12857 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.123, whole genome shotgun sequence.
ACCESSION   DAJVSY010000123 DAJVSY010000000
VERSION     DAJVSY010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12857)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12857)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12857
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.123"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(105..1196)
                     /gene="ychF"
                     /locus_tag="OQQ19_003065"
     CDS             complement(105..1196)
                     /gene="ychF"
                     /locus_tag="OQQ19_003065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001538644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HCS1804604.1"
                     /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVV
                     PMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGH
                     VVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKA
                     ELAVLEKCLPQLENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPY
                     LDQVREIAAKEGSVVVPVCAAVEADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKL
                     LNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQ
                     GAKEAGKMRAEGKDYIVKDGDVMNFLFNV"
     gene            complement(1313..1897)
                     /gene="pth"
                     /locus_tag="OQQ19_003066"
     CDS             complement(1313..1897)
                     /gene="pth"
                     /locus_tag="OQQ19_003066"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HCS1804605.1"
                     /translation="MTIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAK
                     FFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGV
                     AKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQK
                     LIDEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ"
     gene            2175..2453
                     /gene="ychH"
                     /locus_tag="OQQ19_003067"
     CDS             2175..2453
                     /gene="ychH"
                     /locus_tag="OQQ19_003067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress-induced protein YchH"
                     /protein_id="HCS1804606.1"
                     /translation="MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAH
                     GAVLSIFVGAILWLAGARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS"
     gene            complement(2508..4187)
                     /gene="dauA"
                     /locus_tag="OQQ19_003068"
     CDS             complement(2508..4187)
                     /gene="dauA"
                     /locus_tag="OQQ19_003068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415724.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylic acid transporter DauA"
                     /protein_id="HCS1804607.1"
                     /translation="MNKIFSSHVMPFRALIDACWKEKYTAARFTRDLIAGITVGIIAI
                     PLAMALAIGSGVAPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVIIYPVSQQFGL
                     AGLLVAALLSGIFLILMGLARFGRLIEYIPVSVTLGFTSGIGITIGTMQIKDFLGLQM
                     AHVPEHYLQKVGALFMALPTINVGDAAIGIVTLGILVFWPRLGIRLPGHLPALLAGCA
                     VMGIVNLLGGHVATIGSQFHYVLADGSQGNGIPQLLPQLVLPWDLPNSEFTLTWDSIR
                     TLLPAAFSMAMLGAIESLLCAVVLDGMTGTKHKANSELVGQGLGNIIAPFFGGITATA
                     AIARSAANVRAGATSPISAVIHSILVILALLVLAPLLSWLPLSAMAALLLMVAWNMSE
                     AHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIARMTRLAP
                     VVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAF
                     QRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPISGRLAFFPNRRAAMADL"
     gene            complement(4312..5259)
                     /gene="prs"
                     /locus_tag="OQQ19_003069"
     CDS             complement(4312..5259)
                     /gene="prs"
                     /locus_tag="OQQ19_003069"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HCS1804608.1"
                     /translation="MPDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQI
                     NENVRGGDIFIIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVR
                     SARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLN
                     LDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVL
                     VDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIP
                     LSDEIKSLPNVRTLTLSGMLAEAIRRISNEESISAMFEH"
     gene            complement(5410..6261)
                     /gene="ispE"
                     /locus_tag="OQQ19_003070"
     CDS             complement(5410..6261)
                     /gene="ispE"
                     /locus_tag="OQQ19_003070"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HCS1804609.1"
                     /translation="MRTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIE
                     LRDDGDIRLLTPVEGVEHEDNLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMGG
                     GLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAAFAEGVGEIL
                     TPVDPPEKWYLVAHPGVSIPTPVIFKDPELPRNTPKRSIETLLKCEFSNDCEVIARKR
                     FREVDAVLSWLLEYAPSRLTGTGACVFAEFDTESEARQVLEQAPEWLNGFVAKGVNLS
                     PLHRAML"
     gene            complement(6261..6884)
                     /gene="lolB"
                     /locus_tag="OQQ19_003071"
     CDS             complement(6261..6884)
                     /gene="lolB"
                     /locus_tag="OQQ19_003071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein localization protein LolB"
                     /protein_id="HCS1804610.1"
                     /translation="MPLPDFRLIRLLPLAALVLTACSVTTPKGPGKSPDSPQWRQHQQ
                     DVRNLNQYQTRGAFAYISDQQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGN
                     VQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEI
                     TYSQNGKNWKVVYGGYDTKTHPAMPANMELTDGGQRIKLKMDNWIVK"
     gene            7098..8354
                     /gene="hemA"
                     /locus_tag="OQQ19_003072"
     CDS             7098..8354
                     /gene="hemA"
                     /locus_tag="OQQ19_003072"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_041689438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HCS1804611.1"
                     /translation="MTLLALGINHKTAPVSLRERVSFSPDKLDQALDSLLAQPMVQGG
                     VVLSTCNRTELYLSVEEQDNLQEALIRWLCDYHNLNEEDLRKSLYWHQDNDAVSHLMR
                     VASGLDSLVLGEPQILGQVKKAFADSQKGHMKASELERMFQKSFSVAKRVRTETDIGA
                     SAVSVAFAACTLARQIFESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRER
                     AQILADEVGAEVIALSEIDERLREADIIISSTASPLPIIGKGMVERALKSRRNQPMLL
                     VDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETSEFMA
                     WLRAQSASETIREYRSQAEHVRDELTAKALAALEQGGDAQAIMQDLAWKLTNRLIHAP
                     TKSLQQAARDGDNERLNILRDSLGLE"
     gene            8396..9478
                     /gene="prfA"
                     /locus_tag="OQQ19_003073"
     CDS             8396..9478
                     /gene="prfA"
                     /locus_tag="OQQ19_003073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012132158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HCS1804612.1"
                     /translation="MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQ
                     LSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQDELRKAKEKSEQLEQQLQVLLLP
                     KDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYK
                     EIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDIN
                     PADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGA
                     RIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME
                     GKLDMLIEPIIQEHQADQLAALSEQE"
     gene            9478..10311
                     /gene="prmC"
                     /locus_tag="OQQ19_003074"
     CDS             9478..10311
                     /gene="prmC"
                     /locus_tag="OQQ19_003074"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HCS1804613.1"
                     /translation="MEYQHWLREAISQLQASESPRRDAEILLEHVTGRGRTFILAFGE
                     TQLTDEQCQQLDALLTRRRDGEPIAHLTGGREFWSLPLFVSPATLIPRPDTECLVEQA
                     LARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN
                     IHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIV
                     HIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRYY
                     Q"
     gene            10308..10700
                     /locus_tag="OQQ19_003075"
     CDS             10308..10700
                     /locus_tag="OQQ19_003075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB family protein"
                     /protein_id="HCS1804614.1"
                     /translation="MTSFSTLLSVHLISIALSVGLLTLRFWLRYQKHPQAFARWTRIV
                     PPVVDTVLLLSGIALMAKAHILPFSGQAQWLTEKLFGVIIYIVLGFIALDYRRMHSQQ
                     ARIIAFPLALVVLYIIIKLATTKVPLLG"
     gene            10704..11513
                     /locus_tag="OQQ19_003076"
     CDS             10704..11513
                     /locus_tag="OQQ19_003076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat-containing protein"
                     /protein_id="HCS1804615.1"
                     /translation="MRSLADFEFNKAPLCEGMILACEAIRRDFPSQDVYDELERLVSL
                     AKEEISQLLPLEEQLEKLIALFYGDWGFKASRGVYRLSDALWLDQVLKNRQGSAVSLG
                     AVLLWVANRLDLPLLPVIFPTQLILRIECPDGEIWLINPFNGESLSEHMLDVWLKGNI
                     SPSAELFYEDLDEADNIEVIRKLLDTLKASLMEENQMELALRTSEALLQFNPEDPYEI
                     RDRGLIYAQLDCEHVALNDLSYFVEQCPEDPISEMIRAQINNIAHKHIVLH"
     gene            11549..12403
                     /gene="kdsA"
                     /locus_tag="OQQ19_003077"
     CDS             11549..12403
                     /gene="kdsA"
                     /locus_tag="OQQ19_003077"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HCS1804616.1"
                     /translation="MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTV
                     TQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPSQA
                     QPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN
                     EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRR
                     AQVAELARAGMAVGLAGLFIEAHPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKG
                     FEELDTSK"
     gene            complement(12552..12659)
                     /locus_tag="OQQ19_003078"
     CDS             complement(12552..12659)
                     /locus_tag="OQQ19_003078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin Ldr family
                     protein"
                     /protein_id="HCS1804617.1"
                     /translation="MTLAQFAMIFWHDLAAPILAGIITAAIVGWWRNRK"
BASE COUNT         3193 a         3275 c         3335 g         3054 t
ORIGIN      
        1 cattaccgac tcggtgaaat gaaaaatcca cgcaattgcg tggattttat atacttttgc
       61 gctcttcatg agatttagcg aaacctcatg agacaataaa ttaattagac gttgaaaagg
      121 aagttcatca catcgccatc tttcacgatg taatctttac cttctgcacg cattttgcct
      181 gcttctttcg cgccttgttc acctttgtaa gtgatgaaat cttcaaacga gatggtttgt
      241 gcacggataa agcctttttc aaaatcagta tggattttgc ccgctgcctg cggcgcggtt
      301 gctccaaccg gaatggtcca tgcacgcact tctttcaccc cagcggtgaa gtaagtttgc
      361 aggttcagca gcttataacc ggcacggatc acacggttca ggcccggctc ttccagccca
      421 agctcctgca taaactcgtc acgttcttcg tcgtccagtt cggcaatgtc tgcttcaaca
      481 gcagcacaaa ccggaaccac aacagaacct tctttcgccg cgatttcacg cacctggtca
      541 agatatgggt tgttttcaaa accgtcttcg ttgacgttgg cgatgtacat tgttggtttc
      601 agcgtcagga agctcaggta acgaatagcc gctttctctt cagcgcttaa atccagcgcg
      661 cgcagcatac ctgcattttc caactggggc aggcattttt ccaggaccgc cagctcagct
      721 ttcgcgtctt tatcgccacc tttggctttc ttctgtacgc gatgaatcgc acgttcgcag
      781 gtgtcgaggt ctgccagcgc cagttcggtg ttgataactt caatatcgtc agccgggtta
      841 actttgccgg aaacgtgaat gatgttgtca ttttcaaagc agcgaacaac gtgaccgatc
      901 gcttcggttt cacggatgtt ggtcaggaac tggttaccca gaccttcgcc tttcgatgcg
      961 ccttttacca gaccggcgat atcgacaaat tccatggtcg tgggaagcgt acgctgcggt
     1021 tttacgattt cagccagttg atccaggcga ggatcaggca ttggtacgac gcctgtgttc
     1081 ggctcaatgg tgcagaatgg aaagttggcc gcttcaatac cggctttggt cagcgcgttg
     1141 aacagggtag atttcccgac gttgggcaaa ccgacgatac cgcatttgaa tcccatgatt
     1201 taaatcacct taatatctta ataatcaacc tgttattgct aacagattgc agaaatggaa
     1261 ataactttgc ctattataca cggcactcgg caaaaatgcc gcagacaacg acttattgcg
     1321 ctttaaaggc gtgcaatcgg ttcgttgctt tggtcaagcc atctgtaaac cacatttcag
     1381 tacaacgcgc cgcttcgtca atggcttcat caattaactt ctgttcacta acaggcggtt
     1441 tgcctaacac aaaaccgaca actttatttt tatcgcccgg atgaccgatt ccgatgcgta
     1501 aacggtgaaa gttagggtta ttacccaatt tactgatgat gtctttcagt ccattgtgac
     1561 caccatggcc accgcccaat ttaaatttgg cgacgccagg aggcagatcc agttcgtcgt
     1621 gggccaccag aatttcgtcc ggattaatgc ggaaaaaact ggccatcgcc gcaacggctt
     1681 tgccgctgag attcataaat gtagtcggga ctaacaggcg gacatcttcg cctccaagag
     1741 tgactcgcga agtataacca aagaatttag cctcttcgcg cagcggagcg cgcaaacgct
     1801 ctgccagtaa gtcaacgaac caggcaccag cattatgtcg cgttgcggcg tattcagcac
     1861 cggggttcgc caggccgaca atcaatttaa tcgtcacgtt tttttgtcct gagtgtgtac
     1921 ataactggcg cgtagtttac tggttgcgac cccgcttgac aaaaaactgc gtatcaaatg
     1981 cagataacgt aataattgcc tgagtgggct attagaaagt caaggtgttc aggcgtttat
     2041 ttgtaaagtt ttgttgaaat aagggttgta attgtgatca cgcccgcaca taacccacag
     2101 ggtgttgtct atactttaca cataaggaag aggggtattc cctgttacaa cccagaaagt
     2161 tccggaggtg acatatgaaa cgcaaaaacg cttcgttact cggtaacgtg ctcatggggt
     2221 tgggtctggt ggtaatggtg gtcggcgtgg ggtattcaat cctcaaccag ttaccacagt
     2281 ttaatatgcc ccagtatttc gcacatggtg cagtgctaag tattttcgtc ggtgccattc
     2341 tctggctggc gggtgcccgt gttggcgggc atgaacaggt gtgcgaccgt tactggtggg
     2401 ttcgccacta tgacaaacgt tgccgccgta gcgataatcg ccgtcatagc taacaaataa
     2461 tgcagtttgc tgaccagtca gtttgcgctg actggtcaat ctcgtactta taaatccgcc
     2521 atcgccgcgc gacgattcgg gaagaacgcg aggcgtcccg agattggttg aatgcctgcg
     2581 cgagccatag tgcgcagtgg ctggaattcc acgttgcaca cgcgcagttc acatccttcg
     2641 ggcagacgct tcacaaaacg ctggaacgca tcaagaccac cagcatcaag taccggaacg
     2701 gcatcccact tcagaatcac aatccgtttg ccttcaagac gtgactccag gtccgtgaac
     2761 aagccttcag cagcagcaaa aaacagcggg ccaataacgc gcagtaccag aacatcgtct
     2821 ggaacatcta cgactaccgg tgccaggcga gtcatacgtg cgatacgacg cataaacagc
     2881 agcgatgcca gcacgatccc cacgctgatg gcaataacca tatcaaacag cacggtcagc
     2941 gacatgcaca gcagcatgac aatgatgtca tctttcggtg catgacgcag caagtcgacc
     3001 actttatgcg cttcactcat gttccacgcc accatcaaca gcagggctgc catagcggaa
     3061 agcggcagcc aggagagcag cggtgccagt accagcaggg caagaataac cagaatagag
     3121 tggatcaccg ctgagatagg ggaagttgcc ccggcacgga cgttagcggc agaacgcgcg
     3181 atggcagctg tagcggtaat accaccaaag aatggagcga taatattccc cagtccctgt
     3241 ccaaccagtt cgctgttcgc cttgtgtttc gtcccggtca taccatccag taccacggcg
     3301 cagagcagag attcgattgc gccgagcatt gccattgaga atgccgcagg cagcagtgtg
     3361 cgaatagaat cccaggttag cgtgaattct gaattaggca gatcccacgg cagcaccagt
     3421 tgcggcagca gttgcggaat accgttaccc tgagaaccat cggccaggac gtagtggaat
     3481 tgcgaaccga tggtagcaac atgtccgccg agcaggttaa caatccccat caccgcgcaa
     3541 ccagccagca aggccggaag gtgaccgggt aaacgaatgc ccagacgcgg ccaaaaaaca
     3601 agaataccta gcgtcacaat gccaatggca gcatcaccca cattaatggt cggcagcgcc
     3661 ataaataatg cgccgacttt ttgtagataa tgttccggga catgggccat ttgcagaccg
     3721 agaaaatctt taatctgcat ggtaccgatg gtgatcccga tacccgaggt gaaacctaag
     3781 gtgacggaaa ccggaatata ctcaatcagg cgaccaaagc gtgccagacc catcagaatc
     3841 aaaaagatcc ccgacagcaa ggccgcaacc agcagtcctg ccagtccaaa ctgttgcgac
     3901 acgggataga taattaccac aaatgccgca gtcggaccgg aaacgctaaa gcgtgaccca
     3961 cccgtcagag caatgacaat ccccgcaaca gctgcggtat ataaaccgta ctggggtgcc
     4021 acaccactac caatagccaa cgccatcgcc agcgggatag caataatccc gacggttatc
     4081 ccggcaatca ggtcacgggt aaaccgtgcg gcagtatatt tttctttcca gcaagcgtcg
     4141 atcagagcgc ggaaaggcat cacatgtgag gaaaatattt tgttcacaat aatgtttcat
     4201 ccgtgagcgc atcatctgtc aactaaatgg caggtgaagg aggcataggt catacaaatg
     4261 gatattacag acaaaaaaac ccgccgcagc gggtctttga gccgggttcg attagtgttc
     4321 gaacatggca gagatcgatt cttcgttgct gatacgacga atcgcttcgg ccagcatacc
     4381 tgacagggtc agagtacgca cgttcggcag tgatttgatt tcatcgctca gcggaatggt
     4441 atcgcagaca acgacttcat caattacaga gttacgcagg ttgttcgccg cgttgccaga
     4501 gaagatcggg tgagtcgcgt acgcaaatac acgtttagca ccacgttctt tcagagcttc
     4561 agcagcttta cacagcgtac cgccagtgtc gatcatatca tcgaccagta cgcagtcacg
     4621 acctgcaacg tcaccgatga tatgcatcac ctgggaaacg ttcgcacgcg gacgacgttt
     4681 gtcgatgatt gccatatcgg tatcgttcag cagcttagcg atagcgcggg cacgcacaac
     4741 gccgccgatg tccggagaaa ccacaattgg gttatccaga ttcagctgca gcatgtcttc
     4801 cagcaggatc gggctaccaa atacgttatc aaccggaacg tcgaagaaac cctgaatctg
     4861 ttcagcgtgc agatccactg tcagcacacg gtcaacaccg acgctggaga ggaagtctgc
     4921 aaccactttc gcagtgattg gtacacgagc ggaacggacg cgacggtcct ggcgcgcata
     4981 gccaaagtag gggataacag cggtgatacg acctgcggaa gcacgacgca gggcatcaac
     5041 cataacgact aattccatca ggttgtcgtt agtaggggca caagtggact ggatgatgaa
     5101 aatatcacca ccgcgtacat tttcattaat ttgtacgctg acttcgccat cgctaaagcg
     5161 acctacagcg gcgtcgccga gtgaagtgta caggcggttg gcaatacgtt gtgctagttc
     5221 cggggtggcg ttaccagcaa aaagcttcat atcaggcacg agaagaacct caggcatgcg
     5281 tccattggtg gaaagaatct gccgaaaact gtgcgggcca ggcatgatcc tttccaggca
     5341 gtgtattaaa gagcgcgatg caacgtctgg aacaaggtga cgttgtcacc gaaactcagc
     5401 ttgcccggct taaagcatgg ctctgtgcaa tggggaaaga ttaacgcctt tcgccacaaa
     5461 gccattgagc cattccgggg cttgctctag cacctggcgg gcttcagact ctgtatcaaa
     5521 ttcagcaaag acacaggccc ctgtcccagt caggcgcgac ggggcgtatt ctaacagcca
     5581 ggaaagcacc gcatcaacct cgcgaaaacg ttttcttgcg ataacctcgc aatcattgct
     5641 gaattcacat tttagcaacg tttctattga cctttttggc gtattgcgcg ggagttcagg
     5701 atctttaaaa atcaccggag tcggaatact tacaccaggg tgcgccacca gataccactt
     5761 ctctggcgga tccaccggcg ttagtatttc accaacgcct tcggcaaacg cggcatgccc
     5821 ccgaacaaag acaggaacat ctgcgcccag cgtcagcccc atttccgcca gctcatccat
     5881 gcttagcccg cattgccaga gatgatttaa tgccaccagg accgtcgcgg cattggatga
     5941 accaccgccg agaccgccgc ccatcggcaa acgcttgtca atgctgatat tcgcaccgct
     6001 tcccgtcgga agacgcccgc tgtctgccgc agttttcatc aacaatcgcg ctgcgcgaac
     6061 gatcaggtta tcttcatgtt ccacgccttc aacgggcgtt aacagacgaa tatccccatc
     6121 gtcacgaagc tcaatgctga tggtgtcgcc gtaatcaaga aactgaaaca gcgtttgcag
     6181 cgtgtggtaa ccatccgcac gctgaccggt aatgtataaa aacagattaa gttttgccgg
     6241 agagggccac tgtgtccgca ttatttcact atccagttat ccatttttaa cttgatgcgt
     6301 tgaccaccgt cggtgagttc catattggct ggcatcgcag gatgcgtttt ggtgtcataa
     6361 ccaccataaa caaccttcca gtttttgcca ttctggctgt aggtaatttc gctcaggcgg
     6421 tactggtcgt ccagtttgta gtcggttgca tcacccggta aacctaaaat ccactggcgc
     6481 aagctgttga gcggaattgg cattccggtc aatttgccaa tcatctcttc ggcgtcatcg
     6541 gcggtataac gctgaccttt attgtcgact aactgcacgt tacccggttg agcattcagc
     6601 tccagttccg tgctgcccaa tgggttagtg agcagcagac ggtagcgatc ctggccggtt
     6661 tgctgccaga aaaagcgggc gtacactttt tgttggtcag aaatataagc gaacgcgccg
     6721 cgagtctgat actgattaag attgcgcacg tcttgctgat gctgacgcca ttgtggcgaa
     6781 tccgggcttt tgccaggacc tttgggcgtg gtaacggaac aggcagtgag cacaagagca
     6841 gccagcggta gcaggcggat aagacgaaaa tcgggcaggg gcatagtgat gacaagtcct
     6901 tgagatacgt tgcagttata acccttaatg ctagcgttac cgtccgctat cgtctatgtt
     6961 caagttgtct taattgccag aatctaacgg ctttcggcaa ttactccaaa agggggcgct
     7021 ctcttttatt gatcttacgc atcctgtatg atgcaagcag actaactcta tcaacgttgg
     7081 tattatttcc cgcagacatg acccttttag cactcggtat caaccataaa acggcacctg
     7141 tatcgctgcg agaacgtgta tcgttttcgc cggataagct cgatcaggcg cttgacagcc
     7201 tgcttgcgca gccgatggtg cagggcggcg tggtgctgtc gacgtgcaac cgcacggaac
     7261 tttatcttag cgttgaagag caggataacc tgcaagaggc gttaatccgc tggctttgcg
     7321 attatcacaa tcttaatgaa gaagatctgc gtaaaagcct ctactggcat caggataacg
     7381 acgcggttag ccatttaatg cgtgttgcca gcggcctgga ttcactggtt cttggggagc
     7441 cgcagatcct cggtcaggtt aaaaaagcgt ttgccgattc gcaaaaaggt catatgaagg
     7501 ccagcgaact ggaacgcatg ttccagaaat ctttctctgt agcgaaacgc gttcgcactg
     7561 aaacagatat cggtgccagt gctgtgtctg tcgcttttgc ggcttgtacg ctggcgcggc
     7621 agatctttga atcgctctct acggtcacag tgttgctggt aggcgcgggc gaaaccatcg
     7681 agctggtagc gcgtcatctg cgcgaacata aagtacagaa gatgattatc gccaaccgca
     7741 ctcgcgaacg tgcccaaatt ctggcagatg aagttggcgc ggaagtgatt gccctgagtg
     7801 agatcgacga acgtctgcgc gaagccgata tcatcatcag ttccaccgcc agcccgttac
     7861 cgattatcgg gaaaggcatg gtggagcgcg cattaaaaag tcgtcgtaac caaccaatgc
     7921 tgttggtgga tattgccgtt ccgcgcgatg ttgagccgga agttggcaaa ctggcgaatg
     7981 cttatcttta tagtgtggac gatctgcaaa gcatcatttc gcacaacctg gcgcagcgta
     8041 aagccgcagc ggttgaggcg gaaactattg tcgctcagga aaccagcgaa tttatggcgt
     8101 ggctgcgagc acaaagcgcc agcgaaacca ttcgcgagta tcgcagccag gcagagcacg
     8161 ttcgcgatga gttaaccgcc aaagcgttag cggcccttga gcagggcggc gacgcgcaag
     8221 ccattatgca ggatctggca tggaaactga ctaaccgctt gatccatgcg ccaacgaaat
     8281 cacttcaaca ggccgcccgt gacggggata acgaacgcct gaatattctg cgcgacagcc
     8341 tcgggctgga gtagcagtac atcattttct ttttttacag ggtgcattta cgcctatgaa
     8401 gccttctatc gttgccaaac tggaagccct gcatgaacgc catgaagaag ttcaggcgtt
     8461 gctgggtgac gcgcaaacta tcgccgacca ggaacgtttt cgcgcattat cacgcgaata
     8521 tgcgcagtta agtgatgttt cgcgctgttt taccgactgg caacaggttc aggaagatat
     8581 cgaaaccgca cagatgatgc tcgatgatcc tgaaatgcgt gagatggcgc aggatgaact
     8641 gcgcaaagct aaagaaaaaa gcgagcaact ggaacagcaa ttacaggttc tgttactgcc
     8701 aaaagatcct gatgacgaac gtaacgcctt cctcgaagtc cgagccggaa ccggcggcga
     8761 cgaagcggcg ctgttcgcag gcgatctgtt ccgtatgtac agccgttacg ccgaagcccg
     8821 ccgctggcgg gtagaaatca tgagcgccag cgagggtgaa catggtggtt ataaagagat
     8881 catcgccaaa attagcggtg atggtgtgta tggtcgtctg aaatttgaat ctggcggtca
     8941 tcgcgtgcag cgtgttcctg ctacggaatc gcagggtcgt attcatactt ctgcttgtac
     9001 cgttgcggta atgccagaac tgcctgacgc agaactgccg gacatcaacc cagcagattt
     9061 acgcattgat actttccgct cgtcaggggc gggtggtcag cacgttaaca ccaccgattc
     9121 ggcaattcgt attactcact tgccgaccgg gattgttgtt gaatgtcagg atgaacgttc
     9181 acaacataaa aacaaagcga aggcgctttc agtgctcggt gctcgcatcc acgctgctga
     9241 aatggcaaaa cgccaacagg ccgaagcgtc tacccgtcgt aacctgctgg ggagtggcga
     9301 tcgcagcgac cgtaaccgta cttacaattt cccgcagggg cgcgttaccg atcaccgcat
     9361 caacctgacg ctctaccgcc tggatgaagt gatggaaggt aagctggata tgctgattga
     9421 accgattatc caggaacatc aggccgacca actggcggcg ttgtccgagc aggaataatg
     9481 gaatatcaac actggttacg tgaagcaata agccaacttc aggcgagcga aagcccgcgg
     9541 cgtgatgctg aaatcctgct ggagcatgtt accggcagag ggcgtacttt tattctcgcc
     9601 tttggtgaaa cgcagctgac tgacgaacaa tgtcagcaac ttgatgcgct actgacacgt
     9661 cgtcgcgatg gtgaacccat tgctcattta accggggggc gagaattctg gtcgttgccg
     9721 ttatttgttt cgccagcgac cttaattccg cgcccggata cggagtgtct ggtggagcag
     9781 gcactggcgc ggttgcctga acaaccttgc cgtattcttg atctcgggac gggtaccggg
     9841 gcgattgcgc ttgcgctggc tagcgagcgc ccggactgcg aaattatcgc tgtagatcgt
     9901 atgcctgatg ctgtctccct ggcacaacgt aatgcccagc atctggcgat caaaaatatc
     9961 cacattctgc aaagcgactg gtttagcgcg ctagccgggc agcagtttgc gatgattgtc
    10021 agcaatccgc cgtatattga cgagcaggac ccacatcttc aacaaggcga tgtccgcttt
    10081 gagccgctca ctgcgctggt tgcggcagac agtggaatgg cagacatcgt gcatatcatc
    10141 gaacagtcgc gtaacgcgct ggtatccggc ggctttctgc ttctggaaca tggctggcag
    10201 cagggcgaag cggtgcgaca agcatttatc ctcgcggggt atcatgacgt cgaaacctgc
    10261 cgtgactatg gtgataacga gcgcgtaacg ctcggccgct attatcaatg acaagttttt
    10321 ctacactgct tagtgttcat cttattagta tcgcgctttc tgttgggcta ttaaccttac
    10381 gtttctggct acgttatcag aagcatccac aggcatttgc tcgctggacg cgcattgtgc
    10441 cgccggttgt cgatacggtg ttattgttaa gcggcattgc gttgatggct aaagcgcaca
    10501 tcctgccatt ttccgggcag gcacagtggc tgactgaaaa gctgtttgga gttatcattt
    10561 atatcgtttt gggttttatt gcactcgatt atcgtcgtat gcacagtcag caggcgcgca
    10621 ttattgcctt cccgctggcg ttggtggtgc tgtacatcat cattaaactc gccaccacaa
    10681 aagtaccgtt actggggtaa gtcatgagat cgttagctga tttcgaattt aataaagcgc
    10741 cattgtgcga aggcatgatc ctggcttgcg aagcaatccg ccgcgatttt ccctcgcaag
    10801 atgtttacga cgaactggag cgtctcgtta gtctggcgaa ggaagaaatc agccagcttc
    10861 tgcctttaga agagcagctg gaaaaactga tcgcgctgtt ttacggcgac tggggattta
    10921 aagcctcacg cggcgtttat cgtctttccg atgcattatg gctggaccag gtgttaaaga
    10981 atcgacaggg cagtgcggta tcattaggtg cggttttatt atgggtcgcg aatcgtctcg
    11041 atttgccgct gctgccggtg attttcccta cgcagctgat attgcgcatt gaatgtccgg
    11101 atggcgaaat ttggctgatt aatcctttta acggtgaatc gttaagcgaa catatgctgg
    11161 acgtatggtt aaagggaaat atcagcccgt cggcggaact gttttatgaa gaccttgatg
    11221 aagctgataa cattgaggta atccgcaaat tgctggatac actcaaagcc tcgttgatgg
    11281 aagaaaatca gatggagctg gcgttacgca ccagcgaagc tttattacaa ttcaaccctg
    11341 aagatcccta tgaaattcgc gatcgcgggt tgatttatgc gcaactggat tgcgaacacg
    11401 ttgcgttgaa cgatttaagt tatttcgttg aacagtgtcc ggaagacccg atcagcgaaa
    11461 tgatccgtgc gcaaataaat aacatcgcgc ataaacatat tgtgctgcat taattaatcg
    11521 acattttact caagattaag gcgatcctat gaaacaaaaa gtggttagca ttggcgacat
    11581 caacgtagca aatgacctgc cgttcgtact gtttggcggt atgaacgtgc tggaatctcg
    11641 cgatctggcg atgcgcattt gcgagcacta cgtaactgtg acccagaaac tgggtatccc
    11701 ttacgtgttc aaagcctctt ttgacaaagc caaccgctcc tccatccact cttatcgtgg
    11761 accgggcctg gaagaaggga tgaaaatctt ccaagagttg aagcagactt ttggcgtgaa
    11821 aattatcacc gacgttcacg aaccaagtca ggcacagccc gttgctgatg tcgtggatgt
    11881 gattcagttg ccggcgtttc ttgctcgcca gactgacctg gttgaagcca tggcgaaaac
    11941 cggtgcggta attaacgtca agaaaccaca gtttgtcagc ccgggacaga tgggtaatat
    12001 cgttgataaa ttcaaagaag gcggcaacga aaaagtgatt ctttgcgatc gtggtgctaa
    12061 cttcggctat gacaacctgg ttgtcgatat gctgggcttc agcattatga agaaagtgtc
    12121 tggtaactcg ccggtgattt tcgacgtgac ccacgcactg caatgccgcg atccgtttgg
    12181 cgcagcttcc ggtggtcgtc gtgctcaggt ggctgagctg gcacgagccg gtatggcggt
    12241 aggtctggcg gggctgttta ttgaagcgca tccggatccg gaacatgcga aatgtgatgg
    12301 tccatccgcg ctgccgctgg ctaaactgga accgttcctc aagcagatga aagcgattga
    12361 tgatctggtg aaaggtttcg aagaactgga taccagcaag taatcttttt tgcttgaaaa
    12421 ataaagtctt agcgttctgc gttaagactt ttttcatggg tgccagatac aaaaaaggcc
    12481 gcaggctgtt acccctgcgg ccggtttcgg gcgcatattg ccatcacggc agcctgacgc
    12541 ccgttttcac cttacttccg gttacgccac cagccgacaa tcgctgcggt aataattccc
    12601 gccaggatcg gtgctgccag gtcgtgccag aaaatcatgg caaactgcgc gagcgtcata
    12661 tagccgcctt gttgtaatga taacattttg cggctattct tgaattgttc tggttcaaga
    12721 ttagcccccg ttctattgtc aggttaaacc tctcaacgtg cgggggtttt ctctttccag
    12781 caaccaatgc caccagggat aaagcccccg caacattgcg cctcaccgga taacgccggc
    12841 ttgatgtgga tactacg
//
LOCUS       DAJVSY010000124        12659 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.124, whole genome shotgun sequence.
ACCESSION   DAJVSY010000124 DAJVSY010000000
VERSION     DAJVSY010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12659)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12659)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12659
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.124"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(4..324)
                     /gene="chbB"
                     /locus_tag="OQQ19_003079"
     CDS             complement(4..324)
                     /gene="chbB"
                     /locus_tag="OQQ19_003079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N,N'-diacetylchitobiose transporter subunit
                     IIB"
                     /protein_id="HCS1804618.1"
                     /translation="MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA
                     GEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVIDSLLYGKVDGLGVLKAAVAAIKK
                     AAAN"
     gene            complement(622..960)
                     /gene="osmE"
                     /locus_tag="OQQ19_003080"
     CDS             complement(622..960)
                     /gene="osmE"
                     /locus_tag="OQQ19_003080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotically-inducible lipoprotein OsmE"
                     /protein_id="HCS1804619.1"
                     /translation="MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMS
                     RAQVAQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCA
                     EYDTDPQAAK"
     gene            1162..1989
                     /gene="nadE"
                     /locus_tag="OQQ19_003081"
     CDS             1162..1989
                     /gene="nadE"
                     /locus_tag="OQQ19_003081"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-dependent NAD(+) synthetase"
                     /protein_id="HCS1804620.1"
                     /translation="MTLQQQIIKALGAKPQINAEEEIRRSVDFLKSYLQTYPFIKSLV
                     LGISGGQDSTLAGKLCQMAINELRQETGNESLQFIAVRLPYGVQADEQDCQDAIAFIQ
                     PDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGT
                     DHAAEAITGFFTKYGDGGTDINPLYRLNKRQGKQLLAALACPEHLYKKAPTADLEDDR
                     PSLPDEVALGVTYDNIDDYLEGKNVPQQVARTIENWYLKTEHKRRPPITVFDDFWKK"
     gene            2219..3106
                     /gene="cho"
                     /locus_tag="OQQ19_003082"
     CDS             2219..3106
                     /gene="cho"
                     /locus_tag="OQQ19_003082"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease Cho"
                     /protein_id="HCS1804621.1"
                     /translation="MVRRLTSPRLEFEAAAIYEYPEHLRSFLNDLPTRPGVYLFHGES
                     DTMLLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQ
                     QPLFNKRLRRNRQLCALQLNEKRVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTIA
                     DEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCW
                     PWQGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDATTLIRTPAGFDHDGYKILCKPL
                     LSGNYEITELDPANDQRAS"
     gene            complement(3066..3641)
                     /gene="ves"
                     /locus_tag="OQQ19_003083"
     CDS             complement(3066..3641)
                     /gene="ves"
                     /locus_tag="OQQ19_003083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="environmental stress-induced protein Ves"
                     /protein_id="HCS1804622.1"
                     /translation="MEYFDMRKMSVNLWRNAAGETREICTFPPAKRDFYWRASIASIA
                     ANGEFSLFPGMERIVTLLEGGEMLLESADRFNHTLKPLQPFAFAADQVVKAKLTEGQM
                     SMDFNIMTRLDVCKAKVRIAERTFTTFGSRGGVVFVINGAWQLGDKLLTTDQGACWFD
                     GRHTLRLLQPQGKLLFSEINWLAGHSPDQVQ"
     gene            complement(3844..4314)
                     /gene="spy"
                     /locus_tag="OQQ19_003084"
     CDS             complement(3844..4314)
                     /gene="spy"
                     /locus_tag="OQQ19_003084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-independent periplasmic protein-refolding
                     chaperone"
                     /protein_id="HCS1804623.1"
                     /translation="MRKLTALFVASTLALGAANLAHAAAPADAKPMMHHKGKFGPHQD
                     MMFKDLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIVSDTFDKAKAEAQIAK
                     MEEQRKANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTERPAAKGKMPATAE"
     gene            complement(4644..5612)
                     /gene="astE"
                     /locus_tag="OQQ19_003085"
     CDS             complement(4644..5612)
                     /gene="astE"
                     /locus_tag="OQQ19_003085"
                     /EC_number="3.5.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate desuccinylase"
                     /protein_id="HCS1804624.1"
                     /translation="MDNFLALTLTGKKPVITEREINGVRWRWLGDGVLELTPLTPPQG
                     ALVISAGIHGNETAPVEMLDALLGAISHGEIPLRWRLLVILGNPPALKQGKRYCHSDM
                     NRMFGGRWQLFAESGETCRARELEQCLEDFYDQGKESVRWHLDLHTAIRGSLHPQFGV
                     LPQRDIPWDEKFLTWLGAAGLEALVFHQEPGGTFTHFSARHFGALACTLELGKALPFG
                     QNDLRQFAVTASAIAALLSGESVGIVRTPPLRYRVVSQITRHSPSFEMHMASDTLNFM
                     PFEKGTLLAQDGEERFTVTHDVEYVLFPNPLVALGLRAGLMLEKIS"
     gene            complement(5605..6948)
                     /gene="astB"
                     /locus_tag="OQQ19_003086"
     CDS             complement(5605..6948)
                     /gene="astB"
                     /locus_tag="OQQ19_003086"
                     /EC_number="3.5.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-succinylarginine dihydrolase"
                     /protein_id="HCS1804625.1"
                     /translation="MNAWEVNFDGLVGLTHHYAGLSFGNEASTRHRFQVSNPRLAAKQ
                     GLLKMKTLADAGFPQAVIPPHERPFIPVLRQLGFSGSDEQVLEKVARQAPHWLSSVSS
                     ASPMWVANAATIAPSADTLDGKVHLTVANLNNKFHRSLEAPVTESLLKAIFNDEEKFS
                     VHSALPQVALLGDEGAANHNRLGGHYGEPGMQLFVYGREEGNDTRPSRYPARQTREAS
                     EAVARLNQVNPQQVIFAQQNPDVIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLAN
                     LRARVNGFMAIEVPATQVSVSDAVSTYLFNSQLLSRDDGSMMLVLPQECREHAGVWGY
                     LNELLAADNPISELKVFDLRESMANGGGPACLRLRVVLTEEERRAVNPAVMMNDTLFN
                     ALNDWVDRYYRDRLTAADLADPQLLREGREALDVLSQLLNLGSVYPFQREGGGNG"
     gene            complement(6945..8423)
                     /gene="astD"
                     /locus_tag="OQQ19_003087"
     CDS             complement(6945..8423)
                     /gene="astD"
                     /locus_tag="OQQ19_003087"
                     /EC_number="1.2.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate-semialdehyde dehydrogenase"
                     /protein_id="HCS1804626.1"
                     /translation="MTLWINGDWITGQGASRVKRNPVSGEVLWQGNDADAAQVEQACR
                     AARAAFPRWARLSLAERQVVVERFAGLLESNKAELTAIIARETGKLRWEAATEVTAMI
                     NKIAISIKAYHVRTGEQRSEMPDGAASLRHRPHGVLAVFGPYNFPGHLPNGHIVPALL
                     AGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQGGRETGQALSALEDLDGLLF
                     TGRANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQR
                     CTCARRLLLKSGAQGDAFLARLVAVSQRLTPGNWDDEPQPFIGGLISEQAAQQVVTAW
                     QQLEAMGGRTLLAPRLLQLETSLLTPGIIEMTGVAGVPDEEVFGPLLRVWRYDSFEEA
                     ILMANNTRFGLSCGLVSPEREKFDQLLLEARAGIVNWNKPLTGAASTAPFGGIGASGN
                     HRPSAWYAADYCAWPMASLESDSLTLPATLNPGLDFSDEVVR"
     gene            complement(8420..9454)
                     /gene="astA"
                     /locus_tag="OQQ19_003088"
     CDS             complement(8420..9454)
                     /gene="astA"
                     /locus_tag="OQQ19_003088"
                     /EC_number="2.3.1.109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine N-succinyltransferase"
                     /protein_id="HCS1804627.1"
                     /translation="MMVIRPVERSDVSALMQLASKTGGGLTSLPANEATLSARIERAI
                     KTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVGLNDPWHNYRVGTLVHASKELN
                     VYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVV
                     AEMRGVIDEHGYSPFWQSLGKRFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLS
                     QEAQDVIGQVHPQTAPARAVLEKEGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLVE
                     VAEGQPAQGDFPACLVANENYHHFRVVLARTDPATERLILTAAQLDALKCHAGDRVRL
                     VRLCAVEKTA"
     gene            complement(9451..10671)
                     /gene="astC"
                     /locus_tag="OQQ19_003089"
     CDS             complement(9451..10671)
                     /gene="astC"
                     /locus_tag="OQQ19_003089"
                     /EC_number="2.6.1.11"
                     /EC_number="2.6.1.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylornithine/acetylornithine transaminase"
                     /protein_id="HCS1804628.1"
                     /translation="MSQPITRENFDEWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDF
                     AGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFC
                     NSGAEANEAALKLARKFAHDRYGSHKSGIMAFKNAFHGRTLFTVSAGGQPAYSQDFAP
                     LPPDIRHAAYNDINSASALIDDATCAVIVEPIQGEGGVVPASNAFLQGLRELCDRHNA
                     LLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGDFPVGALLTTEECASVMTVG
                     THGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRG
                     LGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDR
                     FAAACEHFVSRGSS"
     gene            11117..11923
                     /gene="xthA"
                     /locus_tag="OQQ19_003090"
     CDS             11117..11923
                     /gene="xthA"
                     /locus_tag="OQQ19_003090"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HCS1804629.1"
                     /translation="MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPL
                     EEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGN
                     VTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD
                     IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSK
                     GFDDNRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFRR"
     gene            12090..>12659
                     /locus_tag="OQQ19_003091"
     CDS             12090..>12659
                     /locus_tag="OQQ19_003091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310483.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HCS1804630.1"
                     /translation="MNAERKFLFACLIFALVIYAIHAFGLFDLLTDLPHLQTLIRQSG
                     LFGYSLYILLFIIATLFLLLGSILVIAGGIVFGPLLGTLLSLIAATLASSCSFLLARW
                     LGRDLLLKYVGHSHTFQAIEKGIARNGIDFLILTRLIPLFPYNIQNYAYGLTTIAFWP
                     YTLISALTTLPGIVIYTVMASDLANEGITL"
BASE COUNT         3075 a         3423 c         3100 g         3061 t
ORIGIN      
        1 aaattaattt gctgcggctt ttttaatcgc tgcaaccgca gccttaagca cgcctaaacc
       61 atcgactttg ccataaagca gcgagtcaat tacttcaacc ggtttgttgg gtaacaaacg
      121 ctggatttcg ggcaacatat aagcaatctg cggccctaat aacacgacat cggcattctg
      181 acctttttca ccagccagtg tttccggaaa tgcttcaata atgaccggaa cttcatattt
      241 ttctgcctgt gcgcgcattt ttgataccag taaagaggta gacatgcccg cagaacaaaa
      301 cagataaatg tgtttctttt ccataaaact gccctcatcg acgattatct gtcagccaga
      361 cactccgcaa gccttaacct gcttccatgc tctgggtaac ttgcgaaacc aacatgactt
      421 tttttgtggc tgaaaggagt atacggtata gacctgagca atagtatttc tttgacctta
      481 taaattgtct ctccttgacc tgcggttatg accctcttca catttcgggc aaataattcg
      541 cgaagataat taagaactca ggccaaaaaa accggcgcaa tggccggttt ccgttgttac
      601 tcaagctttc aaacgaagtg attacttcgc agcctgtgga tcagtgtcgt attcagcaca
      661 ggtctgataa ccggagttga tgacatgtcc ggtatcatct aacgcgacaa agtaggtttc
      721 tgctttacca tcacgttgac ccaggatgta ggtctggcaa gtaccacgag catggatcat
      781 gctcacttca gacgaaggtt tacccgcaat ttgtgcaacc tgcgcccggc tcatgccttt
      841 tttgacgtct ttcaccacag gctgtacaaa ctggtctttg gtacgatcat aagccgtaca
      901 acccgccagc atggttaata ccgccgctgc actcagaatt cctgccatat tcttgttcat
      961 attccgtcct cttgtttatc agcgtgttag ataagcctgg aatacattgg gcgctttttc
     1021 aagcccgtga acgaaacggc tccgctttca gaggattcct gtatgacgtt ttatccacca
     1081 ttcaacccgc tgtcgcttgt cgtttcagta gcgacgggtt agctttaagg aagttttgtc
     1141 ttttctgtct ggaggggttc aatgacattg caacaacaaa taataaaggc gctgggcgca
     1201 aaaccgcaga ttaatgctga agaggaaatt cgtcgtagtg tcgattttct gaaaagctac
     1261 ctgcaaactt atccgttcat taaatcactg gtgctcggga tcagcggcgg tcaggactcc
     1321 acgcttgccg gtaagctgtg ccagatggcg attaatgagc tgcgccagga gaccggcaac
     1381 gaatcactgc aatttattgc cgtacgcctg ccctatggtg ttcaggccga cgaacaagat
     1441 tgccaggatg ccattgcctt tattcaaccg gatcgcgtat taaccgttaa tatcaagggc
     1501 gcggtattgg ccagcgaaca ggcgctgcgc gaagcgggca ttgaactgag cgattttgtc
     1561 cgtggcaatg aaaaagcgcg tgagcggatg aaagcacaat atagcattgc gggtatgacc
     1621 agcggtgtcg tggtgggcac cgatcatgca gcagaagcta ttaccggatt cttcactaaa
     1681 tatggtgacg gcggtacgga cattaatccg ctgtatcgtc tcaacaaacg tcagggtaaa
     1741 cagttactgg cggcattagc ttgcccggaa cacctttata agaaagcgcc aacggccgat
     1801 ctggaagatg atcgcccttc tctgccagat gaagtggcac tcggcgtgac ctatgacaat
     1861 atcgacgact atctggaagg gaaaaacgta cctcaacagg tcgccagaac aatagagaac
     1921 tggtatctga aaaccgaaca taaacgccgt ccgccaatta ccgttttcga tgatttctgg
     1981 aaaaagtaat aatttgcaca tattggattg tgcgaaaaag agtaatttgt tcacgccgga
     2041 tgcggcgtga acgccttatt cgacctataa aactatgcaa attcaataca ttgcaggagt
     2101 cgaataggcc tgacaggcgt agcacgtcag acggtgtaac ctttgtcatc gacccgcctc
     2161 ttttttaatc gcttcccgcc tgttacactg gatagataac cagcattcgg agtcaacagt
     2221 ggtacggcgt ttaacttctc cgcggctcga atttgaagct gcggcaattt atgaatatcc
     2281 cgaacattta cgttcattcc ttaatgactt acccacccga ccaggggtgt atctgtttca
     2341 tggtgaaagt gacaccatgc tgctctatat cggcaaaagc gttaacatcc gcagccgcgt
     2401 cctttctcat ttacgtaccc cggatgaagc cgccatgcta cggcaatccc gacggatcag
     2461 ctggatatgt accgccggtg aaatcggcgc tctgctcctt gaagcgcgat taatcaaaga
     2521 acaacagccg ctgtttaata aacggttgcg ccgcaatcgt cagctctgtg ccctgcaatt
     2581 aaatgaaaag cgcgtcgatg tggtgtatgc caaagaggtg gatttttcac gagcccccaa
     2641 cctgtttggc ctgtttgcca ataggcgcgc agctttgcaa gcattgcaga ccatcgctga
     2701 tgaacaaaaa ctttgttatg gcctgctggg actggaaccg ttaagtcgcg gtcgtgcatg
     2761 ttttcgttca gcgctaaaac gttgcgccgg agcatgctgc ggtaaagaga gccatgagga
     2821 acatgcgcta cgcttgcgcc agtctctgga gcgtttgcgg gtggtgtgtt ggccttggca
     2881 aggggcggtg gcgctgaaag aacagcaccc ggaaatgact caatatcata ttattcaaaa
     2941 ctggctgtgg ctgggggcgg ttaattcgct ggaagacgcg acaacgttaa ttcggacacc
     3001 cgccgggttt gatcacgacg gttataaaat tctttgtaag ccgctgcttt ccggtaacta
     3061 tgaaattact gaacttgatc cggcgaatga ccagcgagcc agttgatttc actgaacaac
     3121 agtttacctt gcggttgtaa aagccgcagg gtgtgcctgc catcgaacca gcacgcgccc
     3181 tggtcggtag tgagcaattt atcgcccagt tgccacgccc cgttaatcac aaacaccacc
     3241 ccgccgcgtg agccaaaggt agtaaacgta cgttcggcaa ttctgacttt cgccttacag
     3301 acatccaggc gtgtcatgat gttgaaatcc atcgacatct gcccttccgt cagtttcgct
     3361 tttaccacct ggtccgctgc aaaggcaaaa ggctgtaacg gttttaaggt atggttaaag
     3421 cggtctgcgc tttcaaggag catctcgccg ccttccagca acgtcactat cctttccatg
     3481 ccgggaaaca aagaaaactc cccattcgcc gcgatggatg caatgctggc acgccagtaa
     3541 aaatcacgtt ttgccggtgg gaaagtgcaa atttcgcgcg tttcaccggc agcatttcgc
     3601 cacagattca ccgacatttt acgcatatca aagtattcca tactcgctcc cggcccgttc
     3661 ttttcattgt tatcgttcag gtaaccgtgg atggttatcg gcaactcggg tgatttacgt
     3721 tagtggtgat caggcttttt ttacaactgt ttgagaagag aaaagaaaac cgccgatcct
     3781 gtccaccgca ttactgcaag gtagtggaca agaccggcgg tcttaagttt tttggctgaa
     3841 agattattca gcagttgcag gcattttacc ttttgccgct ggacgttctg tcagacgctt
     3901 ctcaaaatta gcattaaatt gctttttctg ttccggcgtc aggatgttgt aaattttgtt
     3961 ctgggtttcc atgtgcgcca gcatgttagc tttgcgctgt tcttccattt ttgcgatctg
     4021 cgcttcagct tttgctttat cgaaggtatc gctgacaatg atgtcatgca ttgcgcggcg
     4081 ttcttccagc ggcggacgtt tcatctggtc acgctggcct ttcatgattt cgcggatctg
     4141 ctgtttctgc gcgtcggtca ggttcaggtc tttgaacatc atgtcctgat gcggaccgaa
     4201 cttgcctttg tggtgcatca tcggcttcgc gtcagccggt gctgcggcat gggccaggtt
     4261 agccgcgcca agagccaggg tagaggcaac aaacagtgca gttaatttac gcatattcta
     4321 tatccttcct ttcagttatt tattacggct ttcttaagta gcgtgccgtg ttgacaagat
     4381 taactttact gactttagcg tcaattaatc agagcaacgg taaaacaatg aaagtgtaaa
     4441 aaacactttt gcgccaatta tggagaaaaa aagaaaattt gatggagagt gatgagagaa
     4501 tattacaaca caatgatttt gcagagatta tgaagaacta tactggatga ctggtgataa
     4561 ataaagcaaa taaccaggat taatctgtat taatttataa gaaagcaact taatacccgc
     4621 agaatgattt ctgcgggtaa gtattagctt attttttcga gcattaatcc cgcgcgtaat
     4681 cccaacgcta ccaacggatt agggaataac acatactcta catcatgggt tacggtaaaa
     4741 cgttcctctc cgtcctgcgc cagcaatgtt cctttctcaa acggcataaa attcagcgtg
     4801 tcacttgcca tatgcatttc gaaggacggc gagtggcgag taatttgcga aaccacccga
     4861 taacggagcg gcggtgttct cacgataccg acactctcac cagatagcag cgcagcaatt
     4921 gcgctggcag ttactgcaaa ctggcgaaga tcgttttgcc caaagggcaa cgctttgcca
     4981 agttccagcg tacaggccag cgcgccaaaa tgtctggcgc tgaaatgggt aaacgtacca
     5041 ccaggttcct gatggaacac cagcgcctcc agccccgccg cacccagcca cgtcagaaat
     5101 ttctcgtccc agggaatgtc gcgttgcggt aatacaccga actgcggatg caaggagcca
     5161 cgaattgcgg tatgtagatc aaggtgccag cgcacagatt ctttgccctg gtcataaaaa
     5221 tcttccaggc actgttccag ttcgcgcgcc cgacaggttt ctccgctttc agcaaatagc
     5281 tgccaacgac cgccaaacat tcgattcata tcgctatggc aataacgttt cccttgcttc
     5341 agcgcaggag gattcccgag gatcaccagc aaccgccaac gtaacgggat ctcgccgtga
     5401 gatatcgcgc caagcaacgc gtccagcatt tccacaggtg ccgtctcatt accgtggatc
     5461 cccgcagaaa tcaccagcgc gccttgcggt ggcgttaatg gcgtcagttc cagcacacca
     5521 tcgcccagcc agcgccagcg aacgccgttg atttctcgct cggtgataac cggtttttta
     5581 cccgttaagg tcagagcaag aaaattatcc attgccccct ccctcgcgct ggaacggata
     5641 aaccgaaccg agattcagta attggctcaa tacatccagt gcttcccgcc cttcgcgcag
     5701 caattgcggg tcggccagat cggcagcagt aagacgatcg cggtagtaac gatccaccca
     5761 gtcattgagc gcattaaaca aggtatcgtt catcatcacc gccggattca ccgcccggcg
     5821 ttcttcttct gtcaatacca cccgcaaccg caggcacgcc gggccgccgc cattcgccat
     5881 gctttcacgt aagtcaaaga cttttagttc gctaatcggg ttgtcagcgg caaggagttc
     5941 attgagataa ccccatactc cggcgtgttc ccgacactcc tgaggcagca ccaacatcat
     6001 ggaaccatca tcgcggctca acagttggct gttaaacaga taggtagaca ccgcatccga
     6061 cacggaaacc tgagttgccg gaacttctat cgccataaaa ccgttcaccc gcgcccgcag
     6121 gtttgccagt aactgtgact ggcgagcgaa cgcctgttgg tggcaaaaca gcacctggcg
     6181 gttacttacg gcaatcacgt cattatgaaa aacaccctgg tcgataacgt ccgggttttg
     6241 ctgggcgaaa atcacctgtt ggggattcac ctgattaagc cttgccaccg cctcgctggc
     6301 ttcgcgagtc tgtcgcgccg gataacggga aggccgggta tcattgcctt cttctcgccc
     6361 gtagacaaaa agttgcatac ccggctcacc gtaatgaccg ccgagacgat tgtggtttgc
     6421 cgccccctca tcaccgagca acgctacctg cggcaacgcc gaatggacgc taaatttctc
     6481 ttcgtcgtta aaaatagctt ttaacagcga ttcagtgacg ggcgcttcca gcgaacggtg
     6541 aaatttattg ttcaggttgg caacggtgag atgcactttg ccatccagcg tatcggcaga
     6601 tggcgcgatc gttgccgcat tggctaccca cattggcgaa gcggagctga cgctggaaag
     6661 ccagtgcggt gcctggcgtg caactttttc cagtacctgc tcatcgctac cactgaatcc
     6721 caactgacgc agcaccggaa taaacggacg ctcgtgcggc gggatcacgg cctgggggaa
     6781 tcctgcatcg gcaagggttt tcattttcag taagccctgt ttcgccgcca gtcgcgggtt
     6841 agacacctga aaacggtgac gggtagaggc ttcattacca aacgacaggc cagcgtaatg
     6901 atgcgtcagc cctaccagcc cgtcgaaatt aacttcccag gcgttcatcg caccacctca
     6961 tcggaaaaat ccagcccggg gttaagcgtt gcgggcaaag ttaacgagtc cgactccagg
     7021 ctcgccatag gccatgcgca gtaatctgcg gcataccagg cgctggggcg atggttaccg
     7081 gatgcaccaa tgccgccgaa tggcgcggta ctggcagcac cagtaagcgg tttgttccag
     7141 ttaacaatcc ccgcccgcgc ctccagcaac agttgatcga atttttcccg ttcgggggaa
     7201 accagaccgc aagagagtcc gaagcgagtg ttattcgcca ttagaatcgc ttcctcgaaa
     7261 gaatcataac gccagacgcg caataacggt ccgaacacct cttcatctgg tacgccagca
     7321 acgcctgtca tttcaatgat ccccggcgtc agcaacgatg tctctaattg taataagcgc
     7381 ggcgcaagca gggttcgtcc gcccatcgct tccagttgct gccaggcagt aaccacctgc
     7441 tgtgcggcct gttcagaaat cagcccgcca ataaacggct gcggttcgtc atcccagttg
     7501 cccggcgtta atcgctggct gacggcaacc agacgagcaa gaaacgcatc gccctgcgct
     7561 ccgcttttga gcaataaacg gcgggcgcag gtgcagcgtt gcccggctgt gacaaacgcc
     7621 gactgaatgg tcagatggac agccgcgtcg atatccgcca cctcatcgat aattagcgga
     7681 ttattaccgc ccatctcaag ggcgagaatt ttctccggct gaccggagag ctggcgatgc
     7741 agctggtagc cggtattggc gcgaccggta aacagcaaac cgtcgagatc ctccagcgca
     7801 ctcagcgcct gacccgtttc acgcccgccc tgcaccaggt tcagcacgcc cggcggcaag
     7861 ccagcctgct gccataaacg cattaccgct tcgccactcc acggtgtcag ttcgctgggt
     7921 ttaaagataa tggtgttacc tgccagcaat gccggaacga tatgtccgtt cggcaaatga
     7981 ccagggaaat tatacggccc aaacaccgcc agcacgccgt gcgggcgatg tcgcaggctc
     8041 gccgcaccgt ccggcatttc actacgctgc tcgccggtac gaacgtgata cgccttaatt
     8101 gatatcgcga ttttattgat catcgccgtc acttcggttg ccgcttccca gcgcagctta
     8161 cccgtttctc tggcaataat cgcggttaat tcggctttat tgctttccag caatccggca
     8221 aagcgttcga caacgacctg acgttcagcc aatgagagcc gcgcccagcg cggaaacgcc
     8281 gcacgggctg cccgacaagc ctgttcgacc tgagcggcat cggcatcatt gccttgccat
     8341 aacacctcgc ccgataccgg attacgcttc acacgcgatg cgccctggcc cgttatccag
     8401 tcaccgttaa tccataaagt catgctgttt tctccactgc gcacaggcgc accagacgaa
     8461 cgcgatcccc tgcgtggcat ttgagggcat ccagttgtgc ggcggttaaa atcaaacgct
     8521 cggttgccgg atcggtacgc gccagcacca cgcggaaatg gtgataattt tcattggcga
     8581 ccaggcaggc cggaaaatcg ccctgcgcag gctgcccttc tgccacttcc accagccgac
     8641 ttttacggat ggcgcgcacg cggtcgatgt cacactcaag cgttggcccg ccgtcgaaga
     8701 tgtcgatata gttgcggtaa cgaaaacctt ctttctccag caccgcgcgg gcaggcgcgg
     8761 tttgcggatg tacctgaccg atgacgtcct gggcttcctg ggataaaaag tgggtataga
     8821 tcggatgttt cggcatcagt tctgcaataa atgccttttg cccggtgccg cagagaaaat
     8881 cggcgcggct aaaatccatc gaaaagaagc gtttaccgag gctttgccag aacggtgaat
     8941 agccgtgttc gtcaatcacc ccgcgcattt cagcaaccac tttgtcatta aacttgtcgc
     9001 gaaaagccgc cataaacata aagcgcgatt tcgacagcaa atagccgttg ccctctttgc
     9061 gccagtccgg gtcgagaaac agcgtgcaca gctcgctgct gccggtgtga tcgttactaa
     9121 gaaacagcgt cggcaatgcg ttatagacat tcagctcttt tgaggcgtga accaacgtgc
     9181 cgacccgata gttgtgccag ggatcgttca gcccaaccgc cacctcaatg gcgcaaatcc
     9241 ccgccacggt gcctgtctcg ctatcttcca gcacgaacac atagccctgc tcgcttttgg
     9301 gcagttcgcc ttgccaggtt ttgattgccc tttcgatacg cgcggaaagc gtggcttcat
     9361 tagcgggaag cgacgtcagg ccgccgcccg ttttgctggc aagctgcatc agcgccgaga
     9421 catctgagcg ctcaacggga cggatgacca tcatgatgaa cctcggctaa caaaatgttc
     9481 gcaagcagct gcaaagcgat ccagtccggt cgtcacctct tcttcgctga cattgagcgc
     9541 aggcgcaaaa cgcaccacgt tgccacccgc aatcagtacc ataacgcctg ctttcgccgc
     9601 ctcctgagag atctgtttcg cttgtccggc gtaatcggca ttcagtacac agccaatcaa
     9661 caaacctaag ccgcgaactt cactgaacaa accgtagcgg tgattaatgg tattaagacg
     9721 ctcaacaaac cagtcgtgac gctgtttaac gccattaagc atctctggtg tgttgatgag
     9781 ctccagcact ttgcccgcca ccgccgaggc cagcggattg ccgccatagg tggtgccatg
     9841 agtgccaacg gtcatcacgc tggcgcactc ttcggttgtt aacaacgcac cgaccgggaa
     9901 atcgccgccc agcgctttgg cggtagttaa cagatcaggt gtcacgccgt agtgcatata
     9961 ggcatacagt tccccggtgc gcccgacgcc ggtttgtact tcatcaaaaa tcaacagcgc
    10021 attgtggcgg tcacacaatt cacgcagacc ttgtaaaaac gcgttgctgg ctggcaccac
    10081 accgccttcc ccctggatgg gttcgacaat caccgcacag gtggcgtcgt caatcagcgc
    10141 gctggcagag ttaatatcgt tatatgcagc atgacggata tctggtggca gtggcgcaaa
    10201 atcctgtgaa taggctggct gcccacccgc actgacagta aacagcgtgc gaccatgaaa
    10261 cgcattttta aacgccatga taccgctctt atggctgccg tagcggtcgt gagcgaattt
    10321 acgcgccagt tttagcgccg cttcgttggc ttccgcaccg gagttacaaa agaagacgcg
    10381 atcggcaaac gtggcgtcga tcaatttttt cgccagtcgc agtaccggct cgttggtgta
    10441 accgttgccg gtatgccaga acttactcgc ctgttcgttc agcgcttcac gcagttccgg
    10501 atgcgcatgg cccagcgcgt tcaccgcaat gccacccgcg aagtcgatat actctttccc
    10561 ctgctgatcc cacaagcgcg aaccttcgcc acgtaccggt ataaagggtg ccggagcgta
    10621 aacaggtatc atccattcat caaagttttc acgcgtaatt ggctgagaca tagcgacctc
    10681 tacagtaaat aattcgttat ttatatgtta acaataagta atgtttgcgc tgtaaatgta
    10741 gattgcaggg ttcgtgccag ccagtgataa aagtgcataa acggcggagg ctaactggaa
    10801 atcaaggagt tataaccaaa ccatatgcat ttaaagtgca tataaagtga atacgtttgc
    10861 gatgtgggtg aataaaaaga ataaaaaacg caatgttatg cagaagtaaa atataattct
    10921 ggaattgtga tcattgacga aatttactgg aaattactgc gccattctga cgcagcgcgc
    10981 accaaaagcg ggcatttttt gcgccatcgt tgacatcatt aacaaccatc gatcaaatca
    11041 cttaacaaca ggcggtaagc aacgcgaaat tctgctacca tccacgcact ctttatctga
    11101 ataaatggca gcgactatga aatttgtctc ttttaatatc aacggcctgc gcgccagacc
    11161 tcaccagctt gaagccatcg tcgaaaagca ccaaccggat gtgattggcc tgcaggagac
    11221 aaaagttcat gacgatatgt ttccgctcga agaggtggcg aagctcggct acaacgtgtt
    11281 ttatcacggg cagaaaggcc attatggcgt ggcgctgctg accaaagaga cgccgattgc
    11341 cgtgcgtcgc ggctttcccg gtgacgacga agaggcgcag cggcggatta ttatggcgga
    11401 aatcccctca ctgctgggta atgtcaccgt gatcaacggt tacttcccgc agggtgaaag
    11461 ccgcgaccat ccgataaaat tcccggcaaa agcgcagttt tatcagaatc tgcaaaacta
    11521 cctggaaacc gaactcaaac gtgataatcc ggtactgatt atgggcgata tgaatatcag
    11581 ccctacagat ctggatatcg gcattggcga agaaaaccgt aagcgctggc tgcgtaccgg
    11641 taaatgctct tttctgccgg aagagcgcga atggatggac aggctgatga gctgggggtt
    11701 ggtcgatacc ttccgccatg ctaatccgca aacagcagat cgtttctcat ggtttgatta
    11761 ccgctcaaaa ggttttgacg ataaccgtgg tctgcgcatc gacctgctgc tcgccagcca
    11821 accgctggca gaatgttgcg tagaaaccgg catcgactat gaaattcgca gcatggaaaa
    11881 accgtccgat cacgcccccg tctgggcgac cttccgccgc taatttagca gctctcctgg
    11941 ctcaaactgg gtcaggagaa ttaaccttga gaaaaatcaa caaactgtca gtaatgattt
    12001 gttgcctgcc gtcctttgtt ataccgtcac tgcgttttta gttgtctgac cacttctcta
    12061 ttatcaagtt tgatatagga aactccacga tgaatgctga gcgtaaattt cttttcgcct
    12121 gtcttatttt tgcgctggtc atttacgcta tccacgcttt cggtttattc gatctgctca
    12181 ccgatttacc ccacttacag acactcattc gccagagcgg attgttcggt tatagcctct
    12241 atattctgtt attcatcatt gccaccctct ttctgttact aggaagcata ctggtgatcg
    12301 ctggaggaat agtttttggc ccgctcttag ggacactact ctcattaatt gccgccacgc
    12361 tggcctcctc gtgctcattc ctgctggcgc ggtggctggg acgtgattta ctgctgaaat
    12421 acgtgggcca tagccatacc ttccaggcca ttgaaaaagg cattgcgcgt aacggtattg
    12481 attttcttat tctgacccgc ttaatcccgt tgtttcctta caatattcaa aattacgctt
    12541 acggattaac caccatcgcc ttctggcctt atacccttat ttcggcactc acgaccctgc
    12601 ccggtattgt tatttatacc gtgatggcaa gcgatctcgc caatgaaggc attacgctg
//
LOCUS       DAJVSY010000125        12395 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.125, whole genome shotgun sequence.
ACCESSION   DAJVSY010000125 DAJVSY010000000
VERSION     DAJVSY010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12395)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12395)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12395
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.125"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(31..819)
                     /gene="phoH"
                     /locus_tag="OQQ19_003092"
     CDS             complement(31..819)
                     /gene="phoH"
                     /locus_tag="OQQ19_003092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001741490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate starvation-inducible protein PhoH"
                     /protein_id="HCS1804631.1"
                     /translation="MGRQKAVIKARREAKRVLRRDSRSHKQREEESVTSLVQMSGVEA
                     IGMARDSRDTSPILARNEAQLHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK
                     DVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIG
                     KVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLP
                     RGVCSGLSDALERFEEDEMVGIVRFGKEDCVRSALCQRTLHAYS"
     gene            complement(1441..2712)
                     /gene="efeB"
                     /locus_tag="OQQ19_003093"
     CDS             complement(1441..2712)
                     /gene="efeB"
                     /locus_tag="OQQ19_003093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deferrochelatase/peroxidase EfeB"
                     /protein_id="HCS1804632.1"
                     /translation="MQYKDENGVNEPSRRRLLKVIGALALAGSCPVAHAQKTQSAPGT
                     LSPDARNEKQPFYGEHQAGILTPQQAAMMLVAFDVLASDKADLERLFRLLTQRFAFLT
                     QGGAAPETPNPRLPPLDSGILGGYIAPDNLTITLSVGHSLFDERFGLAPQMPKKLQKM
                     TRFPNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHA
                     ARSKGKETPINLLGFKDGTANPDSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQ
                     FRVEFWDRTPLKEQQTIFGRDKQTGAPLGMQHEHDVPDYASDPEGKVIALDSHIRLAN
                     PRTAESESSLMLRRGYSYSLGVTNSGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALE
                     EYVKPIGGGYFFSLPGVKDANDYLGSALLRV"
     gene            complement(2718..3845)
                     /gene="efeO"
                     /locus_tag="OQQ19_003094"
     CDS             complement(2718..3845)
                     /gene="efeO"
                     /locus_tag="OQQ19_003094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake system protein EfeO"
                     /protein_id="HCS1804633.1"
                     /translation="MTINFCRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPM
                     TITVNAGKTQFIIQNHSQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMT
                     CGLLTNPKGKLIVKGEATADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDA
                     IKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHR
                     LEKALFGDNTTKGMDQYAEQLYTDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKI
                     SGEEDRYSHTDLWDFQANVEGSQKIVDLLRPQLQKANPELLAKVDANFKKVDTILAKY
                     RTKDGFETYDKLTDADRNALKGPITAQAEDLAQLRGVLGLD"
     gene            complement(3903..4731)
                     /locus_tag="OQQ19_003095"
                     /pseudo
     CDS             complement(3903..4731)
                     /locus_tag="OQQ19_003095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309290.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family protein"
     gene            4767..5069
                     /locus_tag="OQQ19_003096"
     CDS             4767..5069
                     /locus_tag="OQQ19_003096"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804634.1"
                     /translation="MQRKVNRSDSDYHYGKEKYKRNVYKMMLECKQREVMPGDINDYS
                     RVERWDCLQRTMCSCRMPRKRHIQPTKLSRLNASELPCKTDKRVYQAISSIRDYQI"
     gene            complement(5400..6908)
                     /gene="putP"
                     /locus_tag="OQQ19_003097"
     CDS             complement(5400..6908)
                     /gene="putP"
                     /locus_tag="OQQ19_003097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HCS1804635.1"
                     /translation="MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGP
                     FVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTE
                     YNNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSY
                     ETALWAGAAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEV
                     IKQKSIENVDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMT
                     WMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAI
                     LAAVMSTLSCQLLVCSSAITEDLYKAFLRKHASQKELVWVGRVMVLVVALVAIALAAN
                     PENRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMIIGALTVIVWKQFGWL
                     GLYEIIPGFIFGSIGIVVFSLLGKAPSAAMQKRFAEADAHYHSAPPSRLQES"
     gene            complement(7067..7276)
                     /locus_tag="OQQ19_003098"
     CDS             complement(7067..7276)
                     /locus_tag="OQQ19_003098"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804636.1"
                     /translation="MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQ
                     LTFLKGATAKNVRECNLMKNSVAEH"
     gene            7331..11293
                     /gene="putA"
                     /locus_tag="OQQ19_003099"
     CDS             7331..11293
                     /gene="putA"
                     /locus_tag="OQQ19_003099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trifunctional transcriptional regulator/proline
                     dehydrogenase/L-glutamate gamma-semialdehyde
                     dehydrogenase"
                     /protein_id="HCS1804637.1"
                     /translation="MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQL
                     ENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRP
                     ETEAVSMLLEQARLPQLVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQ
                     EGVALMCLAEALLRIPDKATRDALIRDKISNCNWQSHIGRSPSLFVNAATWGLLFTGK
                     LVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLE
                     EKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALH
                     PRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLENLCFEPE
                     LAGWNGIGFVIQAYQKRCPLVIDYLVDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGL
                     EGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQY
                     EFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTYETLLAYLVRRLLENGANTSF
                     VNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDL
                     ANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGFVREATPR
                     EVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAI
                     AEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNS
                     VLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGS
                     TEVATLLQCNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAG
                     QRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHI
                     QTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELHKEVFGPVLHVVRYN
                     RNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPF
                     GGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNAL
                     REWAANRPELQALCTQYGELAQAGIQRLLPGPTGERNTWTLLPRERVLCIADDEQDAL
                     TQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDS
                     DQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
                     "
     gene            complement(11333..11971)
                     /gene="rutR"
                     /locus_tag="OQQ19_003100"
     CDS             complement(11333..11971)
                     /gene="rutR"
                     /locus_tag="OQQ19_003100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator RutR"
                     /protein_id="HCS1804638.1"
                     /translation="MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQI
                     AELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKL
                     EVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQ
                     HLIFIIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR"
     gene            12259..>12395
                     /locus_tag="OQQ19_003101"
     CDS             12259..>12395
                     /locus_tag="OQQ19_003101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine utilization protein A"
                     /protein_id="HCS1804639.1"
                     /translation="MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDF
                     AL"
BASE COUNT         2993 a         3433 c         3130 g         2839 t
ORIGIN      
        1 gttcgcccgg gctctgcacc gataacacac ttaactgtat gcatgcagcg tacgttggca
       61 aagtgccgaa cgtacgcaat cctcttttcc gaaccggacg atcccaacca tttcatcttc
      121 ttcgaaacgt tccagcgcgt cacttaatcc ggagcacacg ccgcgaggca aatcgcattg
      181 cgtgatatca ccgttgacga taaccgtcac gttctccccg aggcgggtta aaaacatttt
      241 catttgcgcg gcagtcacat tctgcgcctc gtcaagaatg acgactgcat tttcaaaggt
      301 acgtccacgc atataggcga acggcgcgat ttccaccttc cctatttccg gtcgcaggca
      361 gtactgcata aaggaagccc ctaagcgccg gaccagcacg tcgtagaccg ggcgaaaata
      421 gggagcaaac ttttctgcga tatcaccagg taagaagcca agatcttcat cggcttgcag
      481 aactggacgg gtgacgataa tcctgtcgac atccttatgt atcagggcct ctgccgcttt
      541 tgctgcgctg atccaggttt ttccgcaccc ggcttcgccc gtggcgaata tcagctgctt
      601 actctcaata gccttcagat agtgcaattg cgcttcattt cgcgcgagga tgggcgaggt
      661 atcgcgactg tcgcgggcca taccaatggc ttctacgccg ctcatctgca caagcgaggt
      721 gaccgattct tcttcacgct gcttatggct gcgcgaatcc cgtctcagca cacgttttgc
      781 ctcgcgacga gctttgatca ctgctttttg tcttcccatg gagagcacct tgagttgttt
      841 gtattcatca cacgcgccgt tggcagcgcg attatgcgca cgaacatcag agggttggct
      901 tccttgtaag ccatagtttg cttttggata aaatgccgaa aaacggctac gcgcaccgtt
      961 tacggcgtcg gtaacacatg aaaagaaagg atgaggttga aaatgcaaag tgacgagatg
     1021 actaccggag gagaaaactc cgcgagtggt ggcgcgttga ttatctaaaa catgtccagt
     1081 acaggacgtt accatccgcg atctccatag tgactgacta tcactgccgg gaacttccgc
     1141 tgctacttaa taagtacaac agatctcgca ttttattgca acaatatatt tacttatatt
     1201 taactataaa acactatttc agtgacatta gtttctactg gaaagatgac agagtgatga
     1261 cagtgatgaa aaaagctgtg tgctttcagc aggatttgca tcaggcatca gtgcacgatc
     1321 gccggatgcg gcgtgaacgc cttatccagc ctaccaaacc cgcactgatt gtaggcatga
     1381 taagacgcgc aagcgtcgca tcaggcatct gcgcacaaat gccttatccg cctaaaaaca
     1441 ttaaacccgc aataacgcgc ttccgagata atcgttcgcg tccttcactc ccggcagcga
     1501 aaaaaaataa ccgccgccga taggtttaac gtattcctcc agcgcttcgc cattgagcct
     1561 tttttgtact gtcaggaagc ctttttccag atcgtgttgg tagcagacaa acagcaaccc
     1621 catatccagt tgtccggagt tggtgacccc caacgaataa ctgtagccgc gacgcagcat
     1681 caggctggac tcactctccg ccgtgcgggg attcgccagc cggatatggc tgtccagcgc
     1741 gatcaccttc ccttccgggt cgctggcgta atcaggcaca tcatgctcat gctgcattcc
     1801 cagcggcgca ccggtttgct tatcacggcc aaaaatcgtc tgctgttctt tcagcggcgt
     1861 tctgtcccaa aattccactc gaaactgaat caagcgtact gcctgatagc tgccaccgat
     1921 tgtccacgca ggctcctgct gatctgccgt tacccacacc actttttgca tcaacttatc
     1981 attctggcta tcgggattgg cagtgccgtc tttaaagccc agcaaattaa tcggcgtctc
     2041 tttgccttta ctacgcgctg cgtgatcgga aataaaccct tcccgcttcc agcgcacgct
     2101 gagcaaatcc ggcgtgtgtt tgatgatatc gcgcagcgca tggatcaccg tgtcctgggt
     2161 gttggcgcaa atttgtagca acacatcacc atggcataac gccgcatcca gcgagtcgtt
     2221 ggggaaacgc gtcatcttct gcaacttttt cggcatctgt ggcgcaaggc caaaccgctc
     2281 atcaaacaat gagtgaccca ccgataacgt gatggtgaga ttatcgggcg caatgtagcc
     2341 gccaagaatg ccggaatcga gtggtggcag gcgcggattt ggcgtttctg gtgccgctcc
     2401 gccctgagtc agaaaagcaa aacgctgagt caacaagcga aacaaccgtt caagatcggc
     2461 tttatcgctg gcaagcacat caaacgccac cagcatcatt gcggcctgtt gtggcgtcag
     2521 gatccctgcc tgatgctcac cataaaacgg ctgtttctca ttgcgtgcat ccggtgaaag
     2581 cgtacccggc gcactttgcg ttttttgtgc atgagcgacc ggacaacttc ccgccagcgc
     2641 cagcgcacct atcactttca gtaaacgtcg gcgtgacggt tcattcacgc cgttttcatc
     2701 tttatactgc ataacgctta atccagtccc agcacaccgc gaagttgcgc cagatcttcc
     2761 gcctgcgcag taatcggtcc tttcagtgca ttccggtcgg catcggtcaa tttgtcgtag
     2821 gtttcaaaac cgtctttagt acggtatttc gccagaatgg tatcgacctt tttaaagttg
     2881 gcatcgactt ttgccagcag ttccgggttg gctttttgca gttgtggacg cagcaaatcg
     2941 acaattttct gcgagccttc aacgttagcc tggaaatccc acagatcggt gtggctgtag
     3001 cgatcttctt caccgctaat tttgctggct gccacttcct caatcagtcc ggctgcgccg
     3061 ccgaccactt ttgaaggtgg gaaagccagt tcactgatgc gtttttgcaa atcgaccaca
     3121 tctgtataaa gctgctcagc gtactgatcc atccctttgg tggtgttgtc gccaaacaat
     3181 gctttttcca gacggtggaa accagtgaat tttgggtcgg cggctttttg ctcgtaatca
     3241 tcttcacggg cgtcaatgct gccatccaga tcggagaaca gttcagcaat cggttcaatg
     3301 cgctcatagt gctggcgcgt cggcgcatac agtgctttcg ctttttcgat atcgccagct
     3361 ttaatcgcgt cggtaaaggc tttggtgtcg gtcaccagct gcgtggtttc cgccatgaca
     3421 tacgctttat atgcagtaat tgcaccacca agacttaaca gcgcatcact ttgcgccgca
     3481 tccgccgttg cctcaccttt gacgatcaac ttccctttcg ggttagtcag cagaccgcag
     3541 gtcatatcgt attcgccagg ctgtaaattc gccgtcattt tctggctaaa accaggggcg
     3601 atattttccc gctcttccac caccatcacg cctttgagga tctcccactc cagcgccttc
     3661 tggctatggt tctgaataat gaactgtgtt ttcccggcgt taaccgtaat ggtcatcggt
     3721 tcgcactgct tatccgtcac ggtcactttg acctgcggca catcagcggc gttagccata
     3781 aaagcagaag aaaacagcgc agccacgctc aactgcaatg cgttacggca gaagttaatg
     3841 gtcatgacga gactatccct ttaaagtatg ttgtaactaa gcaagagttt gcgtcgtatt
     3901 tgttacgcgg agcgagacgc tgtcgcccct gcgcgtggtg gcagagcaaa tgccaccagc
     3961 gccgggatga gataaataaa ccagacggcg acttcgctga cgctcggcgc ttcctgatag
     4021 ccaaaaatcc cttccatcag cgtgccaaac agcgagtgag ttgagagcac cgcactcata
     4081 tcgaaggcga tttcctgaaa gtggttccac aatccggctt catgaaatgc gcgaatggca
     4141 ccagctgcca gccctgcggc gacgaagaga ataaacaggc tggtccattt aaaaaatgca
     4201 ccaagattga ggcgaatacc gccccagtag agcagaaagc cgagcaccac ggctgtagca
     4261 agaccgagca ttgcacccag cggcggccag atcccgacat cttgttgaaa tgccgccagc
     4321 aggaaaaaga ccgactccag cccttccctt gcaacggcaa aaaagaccat catcaccagc
     4381 gcccagccat gatgatttcc acgctacaat gcactatcga ctgcctgttc cagttgcact
     4441 tacgttgcgc gacactttgc gcatccagaa aaccatccag gtaaggatca ccacggcgat
     4501 caccgccacg ataccttcaa acagttcctg ttctttttgc ggaaattcgc cggtggtttc
     4561 gttaatgaag atccccaggc ccaggcacaa cgcagcggca agcaacacgc caatccacat
     4621 cacaccaatc catcggcctc gctgggtacg cttaagatag ctggcaatca aactgacaat
     4681 cagcgcggct tcaagtcctt cgcgcaacat aatgagaaac ggaacaaaca tgccacccac
     4741 ccttaaacgt ttttctgagt caatctatgc aaagaaaagt aaatcgcagt gatagcgatt
     4801 atcattacgg taaagaaaaa tacaagcgga atgtttataa aatgatgttg gaatgtaaac
     4861 aaagagaggt aatgccaggg gatataaacg attattccag ggtagaaaga tgggattgtt
     4921 tgcaaagaac catgtgttct tgccggatgc cgcgtaaacg ccatatccag ccgacaaaac
     4981 tgtccagact caatgcatca gagcttccat gtaaaactga taagcgggtg tatcaagcaa
     5041 tttcgtccat ccgcgattat caaatctaac tttttgcccg gaacataata acagctcggg
     5101 tgttggtggc gtcaaaatcg ctgaagcgtt ccccgaaggc cgggacagcc cacatggatg
     5161 tgggctgagg gcgcgtctta caggacgtta cctcgcgccc gacccggtag ccgaagggga
     5221 taagctgaag gtaccgcgca gcggcgattt tgttcgccag agcccggggg tgcacagggg
     5281 gcggcggcga ttggccgccc cctgcgcgct ccctgcacca ttcaatttat atggcgaggc
     5341 acattaaggg agcgcaaccc gctgctgaag ccaaacaaaa ccgccgcagg ctaagtccct
     5401 tagctttcct gcaaccgtga cggcggagcc gaatgatagt gcgcatcggc ctcggcaaag
     5461 cgtttttgca tcgccgctga cggcgcttta cccagcaaac taaacactac aatcccgata
     5521 ctgccgaaga tgaagcccgg aataatttcg tacagtccca gccagccgaa ctgcttccag
     5581 acgataaccg tcagcgcacc gatgatcatc cccgccagtg caccgttacg cgtcatgcgt
     5641 gaccacatca ccgagaacag caccaccgga ccaaacgccg cgccaaagcc tgcccacgcg
     5701 tagctcacta agcccagcac gcggttttcc gggtttgccg ccagcgcaat cgccaccagc
     5761 gccaccacca gcaccatcac acgccctacc cacaccagct ctttctggct ggcatgttta
     5821 cgcagaaacg ctttgtataa atcttcggta atcgcactgg agcacaccag cagttggcaa
     5881 cttaaggttg acattaccgc cgccagaatt gccgacagca gaatcccggc aatccacggg
     5941 ttaaacagaa tttgcgccag ttcgataaac acgcgctcgg cgttctggtt taccgcgcct
     6001 gctaccgccg ggtgctcatt aaagtaagca atcccaaaga agccgacagc caccgcccct
     6061 gccaggcaga ggatcatcca ggtcatactg atacgacgcg catggacaat gctgtggtga
     6121 gaatccgccg ccataaaacg cgccagaatg tgcggctgcc cgaagtaacc cagcccccaa
     6181 cccatcagtg agataatggc aacaaagttc agacctttga gcatatcaac gttttcgatg
     6241 ctcttttgtt tgatcacttc cagcgagtca ccaaagccac cgacactgat aatgacgata
     6301 accggtgtca ggatcagggc aaaaatcatc aggctggcct gtacagtgtc agtccagctc
     6361 accgcgagga aaccgccaat aaaggtgtaa aggatcgtcg ccgcagctcc cgcccacaga
     6421 gccgtttcgt agctcatgcc aaaggtactt tcaaacagac gcgcgcctgc cacaatgccc
     6481 gaagcgcaat aaatggtgaa gaacagcaaa ataaccagcg cggagataat gcgcaaaatg
     6541 cggcttttat cttcaaaacg cccggtgaaa taatccggca atgttaaggc gttattattg
     6601 tattcggtat gcacacgcaa ccgcccggcc accagcttcc agttgatcca cgcgcctaat
     6661 gtcaggccaa tggcgatcca gctttcggaa atcccggaaa gaaaaaccgc gccaggcaac
     6721 cccattaaca gccagccgct catatccgac gcacccgccg ataatgccgt cacaaatggc
     6781 ccaagactac gaccgcccag aatatagtcg tcaaagtttt tcgttgatcg ccaggcgata
     6841 aacccaatca atatcatgcc aaagatatag acacaaaatg tcaccaacat cggtgtgcta
     6901 atagccatct aaagtctcca aaaaattatt atcggcaatg tcgaaacttg ccgttatatc
     6961 tgcaaccgga acggggtaac agagtttatt ttttaccagg gcgaccgtat cctgccggaa
     7021 gcgctggtta ttcacaatcg atttaacaca ccatttacat taaattttag tgctcagcga
     7081 cactattttt catcaggttg cactctctca cattttttgc ggttgcacct ttcaaaaatg
     7141 ttaactgccg cagagaaaaa gtctgagtta tttttttaat ccctgtcata tcaatttctt
     7201 ttattaacat ttcattcatt tttaagcttg ctacgcaggt cacatttaac atggttgcac
     7261 aaagttgcaa catcatggat atttcacgat aacgttaagt tgcacctttc agaacaacag
     7321 gagtaatggc atgggaacca ccaccatggg ggttaagctg gacgacgcga cgcgtgagcg
     7381 tattaagtct gccgcgacac gtatcgatcg cacgccacac tggttaatta agcaggcgat
     7441 tttttcttat ctcgaacaac tggaaaacag cgatactctg ccagagctac ctgcgctgct
     7501 ttctggtgct gccaatgaga gcgatgaagc accgactccg gcagaggaac cacaccagcc
     7561 attcctcgac tttgccgagc aaattttgcc ccagtcggtt tcccgcgccg cgatcaccgc
     7621 ggcctatcgt cgcccggaaa ccgaagcggt ttctatgctg ctggaacaag cccgcctgcc
     7681 gcagctagtt gctgaacagg cgcataaact ggcatatcaa ctggccgata aactgcgtaa
     7741 tcaaaaaaat gccagtggtc gcgcaggtat ggtccaaggg ttattgcagg agttttcgct
     7801 gtcatcgcag gaaggcgtgg cgctgatgtg tctggcggaa gcgttgttgc gtattcccga
     7861 caaagccacc cgcgacgcgt taattcgcga caaaatcagc aactgtaact ggcagtcaca
     7921 cattggtcgt agcccgtcac tgtttgttaa tgccgctacc tgggggctgt tgtttactgg
     7981 caaactggtt tccacccata acgaagccag cctctcccgc tcgctgaacc gcattatcgg
     8041 taaaagcggt gaaccgctga tccgcaaagg tgtggatatg gcgatgcgcc tgatgggcga
     8101 gcagttcgtc acgggtgaaa ccatcgcgga agcgttagcc aatgcccgca agctggaaga
     8161 gaaaggtttc cgttactctt acgatatgct gggcgaagct gcactgactg ccgcagacgc
     8221 acaggcgtat atggtttcct atcagcaggc gattcacgcc attggtaaag cgtctaacgg
     8281 tcgtggcatc tatgaaggtc cgggcatttc aatcaagctg tcggcgctgc atccgcgcta
     8341 cagccgcgcc cagtatgacc gggtaatgga agagctttac ccgcgtctga aatcactcac
     8401 cctgctggcg cgtcagtatg atattggtat taacatcgat gccgaagagg ccgatcgtct
     8461 ggagatctcc ctcgatctgc tggaaaatct ctgtttcgag ccggaactgg caggctggaa
     8521 cggcatcggt tttgttattc aggcttatca aaaacgctgc ccgttggtga tcgattacct
     8581 ggttgatctc gccacccgca gccgtcgccg tctgatgatt cgcctggtga aaggcgcgta
     8641 ctgggatagt gaaatcaagc gtgcgcagat ggacggcctt gaaggctatc cggtttatac
     8701 ccgcaaggtg tataccgacg tttcttatct cgcctgtgcg aaaaagctgc tggcggtgcc
     8761 gaatctaatc tacccgcagt tcgcgacgca caacgcccat acgctggcag cgatttatca
     8821 actggcaggt cagaactact atccgggtca gtacgagttc cagtgcctgc atggtatggg
     8881 cgagccactg tacgagcagg tcacagggaa agttgccgac ggtaaactta accgaccgtg
     8941 tcgtatttat gccccggttg gcacatatga aacgctgctg gcgtatctgg tgcgtcgcct
     9001 gctggaaaac ggtgctaaca cctcgtttgt taaccgtatt gccgacacct ctttgccact
     9061 ggatgaactg gtcgccgatc cggtcactgc tgtagaaaaa ctggcgcaac aggaagggca
     9121 aactggatta ccgcatccga aaattcccct gccgcgcgat ctttacggtc acgggcgcga
     9181 caactcggca gggctggatc tcgctaacga acaccgtctg gcctcgctct cctctgccct
     9241 gctcaatagt gcactgcaaa aatggcaggc cttgccaatg ctggaacaac cggtagcggc
     9301 aggtgagatg tcgcccgtta ttaaccctgc ggaaccgaaa gatattgtgg gctttgtgcg
     9361 tgaagccacg ccgcgtgaag tagaacaggc gctggaaagt gcggttaata acgcgccaat
     9421 ctggtttgcc acgcctccgg ctgaacgcgc ggcgattttg catcgcgctg ccgtgctaat
     9481 ggaaagccag atgcagcaac tgattggtat tctggtgcgt gaagccggaa aaaccttcag
     9541 taacgctatt gccgaagtgc gcgaagcggt cgattttctc cactactacg ccggacaggt
     9601 gcgggatgat ttcgctaacg aaacccaccg tccattaggg cctgtggtgt gtatcagtcc
     9661 gtggaacttc ccgctggcta ttttcaccgg gcagatcgct gccgcactgg cggcaggtaa
     9721 cagcgtgctg gcaaaaccgg cagaacaaac gccgctgatt gccgcgcaag ggatcgccat
     9781 tttgctggaa gcgggtgtac cccctggcgt ggtgcaattg ctgccaggtc agggggaaac
     9841 cgtgggcgcg caactgacgg gtgatgatcg cgtgcgcggg gtgatgttta ccggttcaac
     9901 cgaagtcgct acgttactgc agtgcaatat cgccagccgc ctggacgctc agggtcgccc
     9961 tattccgctc atcgctgaaa ccggcggcat gaacgcgatg attgtcgatt cttcagcact
    10021 gaccgaacaa gtcgtcgtgg atgtgctggc ctcggcgttc gacagtgcgg gtcagcgttg
    10081 ttcggcactg cgcgtgctgt gcctgcaaga tgagattgcc gaccacacgt tgaaaatgct
    10141 gcgcggtgca atggccgaat gccggatggg taatccgggt cgcctgacca ccgatatcgg
    10201 tccggtgatt gatagcgaag cgaaagccaa tattgagcgc catattcaga ccatgcgtag
    10261 caaaggccgt ccggtgttcc aggcggtgcg ggaaaacagc gaagatgccc gtgaatggca
    10321 aagcggcacc tttgtcgccc cgacgctgat cgaactggat gactttgccg aattgcacaa
    10381 agaggtcttt ggtccggtgc tgcatgtggt gcgttacaac cgtaaccagc taccagagct
    10441 gatcgagcag attaacgctt ccggctatgg tctgacgctt ggtgtccata cgcgtattga
    10501 tgaaaccatc gcccaggtca ctggctcggc ccatgttggt aacctgtatg ttaaccgtaa
    10561 tatggtgggc gcagtggttg gtgtgcagcc gttcggcggc gaagggttgt ccggtaccgg
    10621 gccgaaagca ggcggtccgc tctatctcta ccgtctgctg gcgaatcgcc cggaaagtgc
    10681 gctggcagtg acgctcgcgc gtcaggatgc agagtatccg gtcgatgcac agttgaaagc
    10741 cgcattgact cagccgctaa atgcactgcg ggaatgggca gcaaatcgtc cagaattgca
    10801 ggcgttatgt acgcaatatg gcgagctggc gcaggcagga atacaacgat tgctgccggg
    10861 gccgacgggt gaacgcaaca cctggacgct gctgccgcgt gagcgcgtgt tgtgtattgc
    10921 cgatgatgag caggatgcgc tgactcagct cgccgccgtg ctggcggtgg gcagccaggt
    10981 actgtggccg gatgacgcgc tgcatcgtca gctagtaaag gcattgccat cggcagtcag
    11041 cgaacgtatt caactggcga aagcggaaaa tataaccgct caaccctttg atgcggtgat
    11101 cttccacggt gattcggatc agcttcgcgc attgtgtgaa gccgttgctg cgcgggatgg
    11161 agcaattgtt tcggtgcagg gttttgcccg tggcgaaagc aatatccttc tggaacggct
    11221 gtatatcgaa cgttcgctga gtgtgaatac cgctgccgct ggcggtaacg ccagtttaat
    11281 gacgatcggt taaacaggta gccggaggat gttacaccct cctccggcat ctttaacgtg
    11341 gtcgaatccc ctcaataata atccgctgca cgttttcaac cgtttgattg aaaaatacct
    11401 catcgcgcaa cgttgcgcct gtcaccgcct ccacctgagg ggcgaaatcg gcgtaatgtt
    11461 gagtggaagc ccaaataata aaaatcaaat gctgcggatc aatcggcgcg agtttgccgc
    11521 ttttgaccca accggcaatc agcgccgatt tctcatcaat taatgccttc aaatcgcccg
    11581 tcagttcatc cattaacagc ggcgcgcctg ccagcatctc catacagaac aggcgcgaag
    11641 cctgcggata atcgcgtgag acttccagct tcagacggat gtactctttg atcgccgcca
    11701 gcggggcgaa atcttcacga aacgctttta acggtgccag ccagatatcg agaatctgcc
    11761 gcagcacggc aatatacagc gcctcttttg acggaaagta atacagcaga ttggtttttg
    11821 aaacacccgc caactctgcg atctgctcca gccttgtgcc gtgaaaaccg aattgtgaaa
    11881 aagtgtccag tgctgcgcta agaatcgctt ttttcttcgc gcttactgcg cgcgaacgtt
    11941 tacccgttgt tttcactgcg ccttgcgtca tgcgctctcc cctcttgtag attggcaaca
    12001 ggatagcaaa acccccgccc ggcctcgacc ttctgcactc tcatcgcgca cggatgcatg
    12061 ttttatgtgc aactgttttg accgtttagt ccacttttta ccagatattt tagataacac
    12121 aatgctaaca cattaataac attcactttt taaaaactgg catccgcttt gcaaacaagc
    12181 caatacgcgg ctgaaaagga tatgcaggat gcagcgcccc gtctgacttt cactttacga
    12241 gacgaagaga ggttgatgat gaaaattggc gtattcgtac ctattggcaa caacggctgg
    12301 ctcatttcga cccacgcgcc gcagtacatg ccgacctttg aactgaataa agccattgtg
    12361 caaaaagcgg agcattacca tttcgatttc gccct
//
LOCUS       DAJVSY010000126        12038 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.126, whole genome shotgun sequence.
ACCESSION   DAJVSY010000126 DAJVSY010000000
VERSION     DAJVSY010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12038)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12038)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12038
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.126"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..410)
                     /locus_tag="OQQ19_003102"
     CDS             complement(<1..410)
                     /locus_tag="OQQ19_003102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311911.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HCS1804640.1"
                     /translation="MPRLTAKDFPQELLDYYDYYAHGKISKREFLNLAAKYAVGGMTA
                     LALFDLLKPNYVLTTQVEFTDPEIVAEYITYPSPNGHGEVRGYLVKPAKMSGKTPAVV
                     VVHENRGLNPYIEDVARRVTKAGYIALAPDGLSSV"
     gene            566..1606
                     /gene="gpr"
                     /locus_tag="OQQ19_003103"
     CDS             566..1606
                     /gene="gpr"
                     /locus_tag="OQQ19_003103"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glyceraldehyde 3-phosphate reductase"
                     /protein_id="HCS1804641.1"
                     /translation="MVWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALES
                     QRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDM
                     WPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSG
                     KALYVGISSYSPERTQKMVELLHEWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVG
                     CIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQ
                     RGQSMAQMALSWLLKDDRVTSVLIGVSRAEQLEENVQALNNLTFSTEELAQIDQHIAD
                     GELNLWQASSDK"
     gene            complement(1646..2140)
                     /locus_tag="OQQ19_003104"
     CDS             complement(1646..2140)
                     /locus_tag="OQQ19_003104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HCS1804642.1"
                     /translation="MERFLENAMYASRWLLAPVYFGLSLALVALALKFFQEIIHVLPN
                     IFSMAESDLILVLLSLVDMTLVGGLLVMVMFSGYENFVSQLDISENKEKLNWLGKMDA
                     TSLKNKVAASIVAISSIHLLRVFMDAKNVPDNKLMWYVIIHLTFVLSAFVMGYLDRLT
                     RHNH"
     gene            2331..3215
                     /gene="yghA"
                     /locus_tag="OQQ19_003105"
     CDS             2331..3215
                     /gene="yghA"
                     /locus_tag="OQQ19_003105"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(+)-dependent aldehyde reductase"
                     /protein_id="HCS1804643.1"
                     /translation="MSHLKDPTTQYYTGEYPKQKQPTPGIQAKMTPVPDCGEKTYVGS
                     GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKA
                     VLLPGDLSDEKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAIN
                     VFALFWLTQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVA
                     EKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQE
                     SSYVTAEVHGVCGGEHLG"
     gene            complement(3487..3912)
                     /gene="exbD"
                     /locus_tag="OQQ19_003106"
     CDS             complement(3487..3912)
                     /gene="exbD"
                     /locus_tag="OQQ19_003106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HCS1804644.1"
                     /translation="MAMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVD
                     VKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTI
                     FFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEETAKAK"
     gene            complement(3919..4653)
                     /gene="exbB"
                     /locus_tag="OQQ19_003107"
     CDS             complement(3919..4653)
                     /gene="exbB"
                     /locus_tag="OQQ19_003107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HCS1804645.1"
                     /translation="MGNNLMQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSK
                     SVEFFNQKRRLKREQQLLAEARSLNQANDIAADFGSKSLSLHLFNEAQNELELSEGSD
                     DNEGIKERTSFRLERRVAAVGRQMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIA
                     QTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARQIGGFKAMLGDVAAQVLL
                     LQSRDLDLEASAAAHPVRVAQKLRAG"
     gene            4905..6092
                     /gene="metC"
                     /locus_tag="OQQ19_003108"
     CDS             4905..6092
                     /gene="metC"
                     /locus_tag="OQQ19_003108"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HCS1804646.1"
                     /translation="MADKKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFESMEAKKH
                     ATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCALFPCGAAAVANSILAFVEQGD
                     HVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSIT
                     MEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDA
                     MIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEW
                     LAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLSNEELANYLDNFSLF
                     SMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFA
                     RIV"
     gene            6232..6891
                     /locus_tag="OQQ19_003109"
     CDS             6232..6891
                     /locus_tag="OQQ19_003109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1804647.1"
                     /translation="MAVIQDIIAALWQHDFAALADPHIVSVVYFVMFATLFLENGLLP
                     ASFLPGDSLLILAGALIAQGVMDFLPTIAILTAAASLGCWLSYIQGRWLGNTKTVKGW
                     LAQLPAKYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLPNRRFQFFNWLS
                     GLLWVSVVTSFGYALSMIPFVKRHEDQVMTFLMILPIALLTAGLLGMLFVVIKKKYCN
                     A"
     gene            complement(6931..7830)
                     /gene="yqhC"
                     /locus_tag="OQQ19_003110"
     CDS             complement(6931..7830)
                     /gene="yqhC"
                     /locus_tag="OQQ19_003110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001407451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator YqhC"
                     /protein_id="HCS1804648.1"
                     /translation="MKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTP
                     VMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLN
                     VDILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILG
                     KQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEAN
                     MSVSAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSR
                     EFKRYFGVTPGEDAARMRAMQGN"
     gene            8024..9187
                     /gene="yqhD"
                     /locus_tag="OQQ19_003111"
     CDS             8024..9187
                     /gene="yqhD"
                     /locus_tag="OQQ19_003111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase"
                     /protein_id="HCS1804649.1"
                     /translation="MNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKT
                     GVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTK
                     FIAAADNYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDK
                     QAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIQDRFAE
                     GILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAM
                     HGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFF
                     EQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR"
     gene            9292..10119
                     /gene="dkgA"
                     /locus_tag="OQQ19_003112"
     CDS             9292..10119
                     /gene="dkgA"
                     /locus_tag="OQQ19_003112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-didehydrogluconate reductase DkgA"
                     /protein_id="HCS1804650.1"
                     /translation="MANPTVIKLQDGNVMPQLGLGVWQASNEEVIIAIQKALEVGYRS
                     IDTAAAYKNEEGVGKALKNASVNREELFITTKLWNDDHKRPREALLDSLKKLQLDYID
                     LYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQ
                     IELHPLMQQRQLHAWNATHKIQTESWSPLAQGGKGVFDQKVIRDLADKYGKTPAQIVI
                     RWHLDSGLVVIPKSVTPSRIAENFDVWDFRLDKDELGEIAKLDQGKRLGPDPDQFGG"
     gene            10319..11245
                     /locus_tag="OQQ19_003113"
     CDS             10319..11245
                     /locus_tag="OQQ19_003113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708829.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjP/YqhG family protein"
                     /protein_id="HCS1804651.1"
                     /translation="MKIILLFLAALASFTVHAQPPSQTVEQTVRQIYQNYKSDASTPY
                     FGETGERAITSARIQQALTLNDNLTLPGNIGWLDYDPVCDCQDFGDLVLESVAITQTD
                     ADHADAVVRFRIFKDDKEKTTQTLKMVAENGRWVIDDIVSNHGSVLQAVNSENEKTLA
                     ALASLQKEQPEAFVAELFEHIADYSWPWTWVVSDSYRQAVNAFYKTTFKTANNPDEDM
                     QIERQFIYDNPICFGEESLFSRVDEIRVLEKTADSARIHVRFTLTNGNNEEQELVLQR
                     REGKWEIADFIRPNSGSLLKQIEAKTAARLKQ"
     gene            11296..11553
                     /gene="yqhH"
                     /locus_tag="OQQ19_003114"
     CDS             11296..11553
                     /gene="yqhH"
                     /locus_tag="OQQ19_003114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein YqhH"
                     /protein_id="HCS1804652.1"
                     /translation="MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLE
                     QDMKALRPQIYAAKSEANRANTRLDAQDYFDCLRCLRMYAE"
     gene            11633..>12038
                     /locus_tag="OQQ19_003115"
     CDS             11633..>12038
                     /locus_tag="OQQ19_003115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001603762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804653.1"
                     /translation="MRRWHTCFFILLFCGFSGNVLCKESINEAIERLYQPLTSNDDIP
                     ITDEFSLDLRSNMSATPGKMTPWLNNNLLCRCVDDAFVSAEIIQSTHLNGGRTHVLLQ
                     LVIKQNRTDIHRLLGLMLVRENDNHRWLIEDID"
BASE COUNT         3115 a         3052 c         3002 g         2869 t
ORIGIN      
        1 acggaactta agccgtcagg tgccagggcg atataccccg ccttcgtcac tcgccgtgcc
       61 acatcttcga tatacggatt cagtccacga ttctcatgca ccaccaccac ggctggcgtt
      121 ttgccgctca tttttgcggg tttcaccaga taaccccgta cctcgccgtg accatttggc
      181 gaaggatacg tgatgtactc agcaacaatc tccgggtcgg taaactctac ctgagtcgtc
      241 agcacataat ttggcttgag caaatcaaac aacgctaatg ccgtcatccc gcccaccgca
      301 tacttcgccg caaggttgag gaactcacgt ttcgaaattt tcccgtgagc gtaatagtcg
      361 tagtaatcca acaactcttg tgggaaatct ttggcggtta aacgcggcat cgttgcattc
      421 ctcaactggt gttttttaag caaagcataa gcgcgtgttt ttgcccagtt tttcgtcact
      481 ctgtgagcca gactacggga tacgcgctgg cgaatcgcta aactagaaac attgtttcga
      541 aattgaacgg tggaaaggag aggtcatggt ctggttagcg aatcccgaac gttacgggca
      601 gatgcagtac cgctattgcg gaaaaagtgg tttacgcctg cccgcgttat cgctcggttt
      661 atggcacaat ttcggtcacg ttaacgcgct ggaatcacag cgtgcaatcc tgcgtaaagc
      721 gtttgattta ggcattacgc actttgattt agccaacaat tacgggccgc ctccaggaag
      781 cgcagaagag aactttggtc gcctgctgcg ggaggatttt gccgcttatc gcgatgaact
      841 gattatctct accaaggctg gctacgatat gtggcccggc ccttacggct ctggcggttc
      901 acgtaaatac ctgctcgcca gcctcgacca aagcctgaag cgtatggggc ttgagtatgt
      961 cgatatcttt tactctcatc gcgtcgatga aaatacgccg atggaagaaa ccgcctctgc
     1021 gctggctcat gcggtacaaa gcggtaaggc gctgtatgtc gggatctcct cttactcgcc
     1081 agagcggacg caaaaaatgg tcgagttgct gcacgagtgg aaaattccgc ttttaattca
     1141 tcaaccttcg tacaatttac tgaaccgctg ggtggataaa agcggcctgc tggataccct
     1201 gcaaaataac ggcgtgggct gtattgcctt tactcctctg gctcagggat tgctgaccgg
     1261 aaaatatctc aacggcattc cgcaagattc acggatgcat cgtgaaggga ataaagttcg
     1321 tggtctgacg ccgaaaatgc ttaccgaagc caacctcaac agcctgcgct tattgaatga
     1381 aatggcacag cagcgtggac aatcaatggc gcaaatggcg ttaagctggt tgctgaaaga
     1441 tgatcgcgtg acgtcggtat tgattggtgt cagccgcgcg gagcaactag aggagaacgt
     1501 gcaggcgctg aataatctga catttagcac cgaggagctg gcgcagattg atcagcatat
     1561 cgccgatggc gagctgaatc tgtggcaggc gtcttccgat aaatgacctg ttaataacgg
     1621 gcgcgcgaac cgcgcccgaa tcagatcagt gattatgacg agtcagtcgg tcaagatagc
     1681 ccatcacaaa tgcagagagc acaaacgtca gatggataat gacgtaccac atcagtttgt
     1741 tatccgggac atttttcgca tccataaaga cgcgcagtaa gtgaatggaa gaaattgcca
     1801 caatcgacgc tgctactttg tttttcagcg acgttgcgtc cattttcccc agccagttca
     1861 gcttctcttt gttctcggag atatccagct gcgagacgaa attctcataa ccggaaaaca
     1921 tcaccatcac cagcaaaccg ccaaccagcg tcatatccac cagcgacagc aacacgagga
     1981 tcaaatctga ttccgccatc gagaagatat tcggcagtac gtgaataatc tcctggaaga
     2041 acttcagcgc cagggcaact aacgccagcg aaaggccaaa gtacacgggg gcaagcagcc
     2101 agcgagaagc atacattgca ttttcaagaa aacgttccat acattcctgt cgtgtagtta
     2161 aaacgggcaa cagtatatcg caattgagta aacagcacgc aacagcaaat caacatatac
     2221 gttaaacctt tgtcgcataa ttctgaggtt tagggatctt cctggttccc ttatcaacgc
     2281 atcgagagcg tctaccctta aaagacgttg aacctgaagg gagaaaaaca atgtctcatt
     2341 taaaagaccc gactacgcag tattacactg gtgaatatcc caaacagaaa caaccgacgc
     2401 caggcatcca ggcgaagatg acaccggtac cggattgcgg cgagaaaacc tatgttggta
     2461 gcggtcgcct gaaagatcgt aaagcactgg tgacaggggg cgattccgga ataggtcgcg
     2521 ctgccgccat cgcttacgcg cgtgaagggg ctgacgtggc gatcagttat cttcccgtgg
     2581 aagaagaaga cgctcaggat gtgaaaaaga tcattgaaga atgcggacgc aaagccgttc
     2641 tgctgccagg cgatttaagc gatgagaaat tcgcccgttc gctggttcac gaagcgcaca
     2701 aggcgttagg cgggctggat attatggcgc tggtcgccgg gaaacaggtt gccattccgg
     2761 atattgcaga cctcaccagc gaacagtttc aaaagacctt tgccattaac gttttcgcgc
     2821 tgttctggct aacccaggaa gcgatccccc tgctaccgaa aggtgcaagt atcatcacca
     2881 cttcgtcaat ccaggcatac cagccaagtc cgcatttact ggactatgcg gctacgaagg
     2941 cggcgattct gaactacagc cgtggcctgg caaaacaggt cgcggagaaa ggtattcggg
     3001 tgaatattgt cgcgccaggc cctatctgga cggcactgca aatttccggc ggacaaacgc
     3061 aggataagat cccgcagttt ggtcagcaaa cgccgatgaa gcgtgcgggg caaccggcgg
     3121 aactggcccc tgtatatgtt tatctggcaa gtcaggagtc gagctacgtc accgcagaag
     3181 tgcacggtgt gtgcggcggc gagcatttag gttaaaaaaa tgcccggttg tgaaaagcaa
     3241 ccgggcatca ttgtgaattc actcttacct gatgtggcga aaacgcctta tccgcctaca
     3301 aacgcatgaa gattcaacat gttgcaatag attttgtagg cctgataagc gtagcgcatc
     3361 aggcattgag cacctaatgc cggatgcggc gtgaacgcct tatccggcct acaaacgcac
     3421 gaagattcaa catgttgcaa tagattttgt aggcctgatg agcgtagcgc atcaggcaat
     3481 tctactttac ttcgctttgg cggtttcttc gccgaccaga cctatcttca ggtaacccgc
     3541 ctgatgcagc gtatccatta ccttcatcaa cgtctcgtaa tcgacggttt tatccgctcg
     3601 gaagaagatg gtggtgtctt tcttgccttc ggttaacgca ttcaacgccg taatcattgt
     3661 ttcatcggtg accggatcgt taccgataaa catcgagttg tctgccttca ccgacagata
     3721 aaccggtttt tccgggcgcg gctgcggcgt gctggtagaa gcaggcaagt tcaccttcac
     3781 atctaccgtc gctaacggtg ccgccaccat aaagataatc agcagaacca acatcacgtc
     3841 gataaacggc gtcacgttga tatcatgcat ttcgccgtta tcgtcgaggt tttcgttaag
     3901 atgcattgcc atcggatatt atcctgcgcg taatttttgt gcgacacgaa ccggatgcgc
     3961 agcggcgctg gcttccagat ccaggtcacg gctttgcagc aacaatacct gcgctgcaac
     4021 atcacccagc atcgctttaa agccgccaat ctggcgtgca aatacgttat agataacgac
     4081 cgcaggaatc gctgccacga ggccgattgc cgttgctaac agagcttctg cgatacccgg
     4141 cgcaacgact gccaggttag tggtctgcgt ttgcgcgata ccaataaagc tgttcatgat
     4201 gccccagacc gtaccaaaca gaccaacgaa cggagaaatc gcgccgatgg ttgccagata
     4261 gccgttaccg cggcccattt gacgacccac tgcggcgacc cgacgctcca gacggaagct
     4321 ggtacgttct ttaatacctt cgttatcgtc gctgccttct gacagttcca gctcattctg
     4381 cgcttcattg aacaaatgca ggcttaagct tttgctacca aaatcagcgg cgatatcgtt
     4441 ggcctggttt aaggaacgcg cttcagccag cagttgctgc tcgcgcttta ggcgacgctt
     4501 ctgattgaag aactctacgc tcttactgaa gaagattgcc caggtgacta cggaggccaa
     4561 aataagccca atcatcacgc acttaacgac aatatcggcg tgctgataca taccccagac
     4621 ggaaaggtct gtctgcatta aattattacc cactgtgtat ctccaggacg caagtcacaa
     4681 aatctgcgca taataatatc aaaacgacgt cgaattgata gtcattctca ttactatttg
     4741 catactgccg tacctttgct ttcttttcct tgcgtttacg cagtaaaaaa gtcaccagca
     4801 cgccatttgc gaaaattttc tgctttatgc caattcttca ggatgcgccc gcgaatattc
     4861 atgctagttt agacatccag acgtataaaa acaggaatcc cgacatggcg gacaaaaagc
     4921 ttgatactca actggtgaat gcaggacgca gcaaaaaata cactcttggc gcggtaaata
     4981 gcgtgattca gcgcgcttct tcgctggtat ttgagagtat ggaagccaaa aagcacgcga
     5041 cgcgcaatcg cgccaatggc gagttgttct atggacggcg cggaacgtta acccattttt
     5101 ccttacaaca agcgatgtgt gaactggaag gtggcgcagg ctgcgcgcta tttccctgcg
     5161 gggcggcagc ggttgctaat tcgattcttg cttttgtcga acagggcgat catgtgttga
     5221 tgaccaacac tgcctatgaa ccgagtcagg atttctgtag caaaatcctc agcaaactgg
     5281 gcgtaacgac atcgtggttt gatccgctga ttggtgccga tatcgttaag catctgcagc
     5341 caaacactaa aatcgtgttt ctggaatcgc caggctccat caccatggaa gtccacgacg
     5401 ttccggcgat tgttgccgcc gtacgcagtg tggtgccgga tgccatcatt atgatcgaca
     5461 acacctgggc agccggtgtg ctgtttaagg cactggattt tggcatcgat gtttctattc
     5521 aagccgccac caaatatctg gttgggcatt cagatgcgat gattggcact gccgtgtgca
     5581 atgcccgttg ctgggagcag ctacgggaaa acgcctatct gatgggccag atggtcgatg
     5641 ccgataccgc ctatataacc agccgtggcc tgcgcacatt aggtgtgcgt ttgcgtcaac
     5701 atcatgaaag cagtctgaaa gtggctgaat ggctggcaga acatccgcaa gtagcgcgag
     5761 ttaaccaccc tgctctgcct ggcagtaaag gacacgaatt ctggaaacga gactttacag
     5821 gtagcagcgg gctgttttcc tttgtgctta agaaaaaact cagtaatgaa gagctggcga
     5881 actatctgga taacttcagt ttattcagca tggcctactc gtggggcggg tatgaatcgt
     5941 tgatcctggc gaatcaacca gaacatatcg ccgccattcg cccacaaggc gagatcgatt
     6001 ttagcgggac cttgattcgc ctgcatattg gtctggaaga tgtcgacgat ctgattgccg
     6061 atctggacgc cggttttgcg cgaattgtat aacattgcca cttttggaca attttgcaga
     6121 catttaattg tgaaaagtct taaattgttg cgtccgggat caaggcgtcc cggacgaatc
     6181 aggagtacaa taggcagata aaggcttaaa cgctgttcca caggaaagtc catggctgtt
     6241 attcaagata tcatcgctgc gctctggcaa cacgactttg ccgcgctggc ggatcctcat
     6301 attgttagcg ttgtttactt tgtcatgttt gccacgctgt ttttagaaaa cggcctgctg
     6361 cccgcctcat ttttgccagg cgacagcttg ttgatactgg caggcgcatt gattgcccag
     6421 ggggttatgg attttctgcc tacgattgcg attctgaccg ccgcagcaag tctgggctgc
     6481 tggctaagtt atattcaggg gcgctggtta gggaatacca aaacggtgaa aggctggctg
     6541 gcacagcttc ctgctaaata tcaccagcgc gccacctgca tgtttgaccg ccacggtctg
     6601 ctggcgctgc tggctggacg ttttcttgca tttgtccgta cgctgctgcc aaccatggcg
     6661 ggaatttccg gtctgccaaa ccgtcgcttc cagtttttca actggttaag tggattgctg
     6721 tgggtcagcg tggtaaccag ttttggctat gccttaagta tgattccgtt cgttaaacgc
     6781 catgaagatc aggtaatgac gttcctgatg atcctgccaa ttgccttgtt aaccgctggc
     6841 ttgttaggca tgctgtttgt ggtgattaaa aaaaaatact gtaacgcctg acgattttcc
     6901 ccgttcccgg ctgctgtacc gggaacgtat ttaattcccc tgcatcgccc gcattcttgc
     6961 cgcatcttcc cccggcgtca caccgaagta acgtttaaac tcacggctaa attgcgatgc
     7021 gctttcatag ccgacgcgca tcgctgctgc gctggccttc atgccgtcat ggatgatcat
     7081 catccgcgcc ttatgcagac ggtaattctt caaatactgc aacggcgagg tgctggtgac
     7141 agacttaaaa ttatggtgga acgccgatac gctcatgttg gcttctgccg ccagttgctc
     7201 gacgctcagg ttttcggtgt atttattctc aatccgtttc agcacgcggc taatcagact
     7261 gaagtgagtc tggcgactga ccagcgccag taacgcgccg ccgcaaggtc cggtcagcac
     7321 gtagtacaga atttcgcgga tgatctgttt gccgagaata cgcgcatcca gtggtcgctc
     7381 catcacgtcg agtaaccgct ccgccgcgca taaaatctct tctgataacg tggcggagtt
     7441 aatcccgctg gctgccatcg acggctggaa atgctcatct tcgccaatgt ccatcaacag
     7501 ttcctgtaac tgcaaaatat cgacattgag acgcaaccct gccagcggca cctctgacgt
     7561 ggcataggtt tcgcactcaa acggcaacgg caccgtcagc agcaggtatt cattggcatc
     7621 ataacgaaac acgcgttcat tgatataacc gattttatgc ccggaaaaga gaattatgat
     7681 gccaggctcg tacatcaccg gtgtacgtgc gaaaggcgtc tcaccataca acaaacgcac
     7741 atcgggcaac agttctgaca aactattttc tttatttttc agtttattaa ctttatccgc
     7801 cagcaagcgg caaatctctt cacgtttcat atcgcgtaat ttcttaggaa taatgcggca
     7861 atttgattgt gcgcaatttt gtagcatttc tccagcactc tggagaaata ggcaagacat
     7921 tggcagaaat gagcattgag agccagggcg ctggcgatca caatgaaaaa catcaggcag
     7981 atcgttctct gccctcatat tggcccagca aagggagcaa gtaatgaaca actttaatct
     8041 gcacacccca acccgcattc tgtttggtaa aggcgcaatc gctggtttac gcgaacaaat
     8101 tcctcacgat gctcgcgtat tgattaccta cggtggcggc agcgtgaaaa aaaccggcgt
     8161 tctcgatcaa gttctggatg ccctgaaagg catggacgtg ctggaatttg gcggtattga
     8221 gccaaacccg gcttatgaaa cgctgatgaa cgccgtgaaa ctggttcgcg aacagaaagt
     8281 gactttcctg ctggcggttg gcggcggttc tgtactggac ggcaccaaat ttatcgccgc
     8341 agcggataac tatccggaaa atatcgatcc gtggcacatt ctgcaaacgg gcggtaaaga
     8401 gattaaaagc gccatcccga tgggctgtgt gctgacgctg ccagcaaccg gttcagaatc
     8461 caacgcaggc gcggtgatct cccgtaaaac cactggcgac aagcaggcgt tccattctgc
     8521 ccatgttcag ccggtatttg ccgtgctcga tccggtttat acctacaccc tgccgccgcg
     8581 tcaggtggct aacggcgtag tggacgcctt tgtacacacc gtggaacagt atgttaccaa
     8641 accggttgat gccaaaattc aggaccgttt cgcagaaggc attttgctga cgctgatcga
     8701 agatggtccg aaagccctga aagagccaga aaactacgat gtgcgcgcca acgtcatgtg
     8761 ggcggcgacg caggcgctga acggtttgat tggcgctggc gtaccgcagg actgggcaac
     8821 gcatatgctg ggccacgaac tgactgcgat gcacggtctg gatcacgcgc aaacactggc
     8881 tatcgtcctg cctgcactgt ggaatgaaaa acgcgatacc aagcgcgcta agctgctgca
     8941 atatgctgaa cgcgtctgga acatcactga aggttccgac gatgagcgta ttgacgccgc
     9001 gattgccgca acccgcaatt tctttgagca attaggcgtg ccgacccacc tctccgacta
     9061 cggtctggac ggcagctcca tcccggcttt gctgaaaaaa ctggaagagc acggcatgac
     9121 ccaactgggc gaaaatcatg acattacgtt ggatgtcagc cgccgtatat acgaagccgc
     9181 ccgctaagct ttttacgcct caaactttcg ttttcgggca tttcgtccag acttaagttc
     9241 acaacacctc accggagcct gctccggtga gttcatataa aggaggaacg tatggctaat
     9301 ccaaccgtta ttaagctaca ggatggcaat gtcatgcccc agctgggact gggcgtctgg
     9361 caagcaagta atgaggaagt aatcatcgcc attcaaaaag cgttagaagt gggttatcgc
     9421 tcgattgata ccgccgcggc ctacaagaac gaagaaggtg tcggcaaagc cctgaaaaat
     9481 gcctcagtca acagagaaga actgttcatc accactaagc tgtggaacga cgaccacaag
     9541 cgcccccgcg aagccctgct cgacagcctg aaaaaactcc agcttgatta tatcgacctc
     9601 tacttaatgc actggcccgt tcccgctatc gaccattatg tcgaagcatg gaaaggcatg
     9661 atcgaattgc aaaaagaggg attaatcaaa agcatcggcg tgtgcaactt ccagatccat
     9721 cacctgcaac gcctgattga tgaaactggc gtgacgcctg tgataaacca gatcgaactt
     9781 catccgctga tgcaacaacg ccagctacac gcctggaacg cgacacacaa aatccagacc
     9841 gaatcctgga gcccattagc gcaaggaggg aaaggcgttt tcgatcagaa agtcattcgc
     9901 gatctggcag ataaatacgg caaaaccccg gcgcagattg ttatccgctg gcatctggat
     9961 agcggcctgg tggtgatccc gaaatcggtc acaccttcac gtattgccga aaactttgat
    10021 gtctgggatt tccgtctcga caaagacgaa ctcggcgaaa ttgcaaaact cgatcagggc
    10081 aagcgtctcg gtcccgatcc tgaccagttc ggcggctaac atgcaaattc tcccggtggc
    10141 ggtaatgttc cgctaccgga cttttcagaa atcatttatt cccctcgcgt cccgcccgtt
    10201 gttactcttc cttgttcagg aatgccaaat ataaggacat catcatgcag agccggaagc
    10261 tcttaaaaga acaactcatc tatatccggg ataaacgcaa cggagaggtg aaaaacagat
    10321 gaaaataata cttctgtttt tagcagccct ggcaagtttt accgtacacg cgcagcctcc
    10381 ttcacagacc gtagaacaaa cagtccggca gatttatcag aactataaat cagatgccag
    10441 tacgccttat ttcggtgaaa ccggagagcg ggcgataact tcagcgcgta ttcaacaggc
    10501 gcttaccctg aacgacaatc ttacgctgcc gggcaatatt ggctggctgg attatgatcc
    10561 ggtttgtgat tgtcaggatt ttggcgatct ggtgctagaa agcgttgcga taacccaaac
    10621 tgacgccgat catgccgatg ccgttgtgcg ctttcgtatc tttaaagatg ataaagaaaa
    10681 gaccacgcag acactgaaaa tggtggcgga aaatggtcgt tgggtcattg acgatattgt
    10741 cagcaatcat ggcagtgtct tacaagcagt taatagcgag aatgaaaaaa cgctggccgc
    10801 tttagcttcg ttgcaaaaag aacagccgga agcctttgtt gccgaactct ttgaacatat
    10861 tgctgattat agctggccgt ggacgtgggt ggtttccgac tcttaccgcc aggcggttaa
    10921 tgccttctat aaaaccacct tcaagacggc caataatccc gatgaagata tgcaaataga
    10981 acggcaattt atttacgaca atccgatctg ttttggcgaa gagtcgctat tttcacgcgt
    11041 tgatgaaatt cgagtcctgg agaaaaccgc cgattccgcc cgcattcatg ttcgttttac
    11101 gctgaccaat ggcaacaacg aagagcaaga actggtttta cagcggcgcg aaggcaagtg
    11161 ggaaatcgct gattttatcc gcccgaacag cggcagccta cttaagcaga ttgaggcaaa
    11221 aactgccgcc agattaaagc aatgagctga attaaataac aattagccgg aacaataaat
    11281 aaaagggaac actatatgaa aacgattttc accgtgggag ctgttgttct ggcaacctgc
    11341 ttgctcagtg gctgcgtcaa tgagcaaaag gtcaatcagc tggcgagcaa tgtgcaaaca
    11401 ttaaatgcca aaatcgcccg gcttgagcag gatatgaaag cactacgccc acaaatctat
    11461 gctgccaaat ccgaagctaa cagagccaat acgcgtcttg atgcacagga ctattttgat
    11521 tgcctgcgct gcttgcgtat gtacgcagaa tgataaaaaa atccccggca gcatgtcagt
    11581 tgccgggtta taggctgttt gctaaaaaaa agccaaacat aaggacatga ttatgcgacg
    11641 ctggcacacc tgttttttta ttctgctgtt ctgtggcttc agcggaaacg tgttgtgcaa
    11701 agaatcgatt aatgaagcga tagaacgttt gtaccaacca ttgaccagta atgacgatat
    11761 accaataacc gatgaattca gtctcgattt gcgaagtaat atgagcgcta ctcctggcaa
    11821 aatgacaccc tggctgaata ataatctttt gtgtcgctgt gtcgatgacg ctttcgtttc
    11881 tgcagaaata atccaaagca cacacctaaa tggcggccga acgcatgtac tgttgcagct
    11941 ggttatcaaa caaaatcgca cagatatcca ccggttactg gggctaatgc tggttcgtga
    12001 aaatgataat catcgttggc taatagaaga catcgatg
//
LOCUS       DAJVSY010000127        12030 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.127, whole genome shotgun sequence.
ACCESSION   DAJVSY010000127 DAJVSY010000000
VERSION     DAJVSY010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12030
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.127"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..192
                     /locus_tag="OQQ19_003116"
     CDS             <1..192
                     /locus_tag="OQQ19_003116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HCS1804654.1"
                     /translation="RGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGT
                     NTLLACCCLLRPEEVNSEY"
     gene            182..355
                     /locus_tag="OQQ19_003117"
     CDS             182..355
                     /locus_tag="OQQ19_003117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module toxin, GnsA/GnsB family"
                     /protein_id="HCS1804655.1"
                     /translation="MNIEELKKQAETEIADFIAQKIAELNKNTGKEVSEIRFTAREKM
                     TGLESYDVKIKIM"
     gene            complement(404..1476)
                     /locus_tag="OQQ19_003118"
                     /pseudo
     CDS             complement(404..1476)
                     /locus_tag="OQQ19_003118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415512.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
     gene            complement(1548..4292)
                     /gene="torS"
                     /locus_tag="OQQ19_003119"
     CDS             complement(1548..4292)
                     /gene="torS"
                     /locus_tag="OQQ19_003119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415513.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMAO reductase system sensor histidine
                     kinase/response regulator TorS"
                     /protein_id="HCS1804656.1"
                     /translation="MNLTLTRRLWMGFALMALLTLTSTLVGWYNLRFISQVEKDNTQA
                     LIPTMNMARQLSEASAWELFAAQNLTSADNEKMWQAQGRMLTAQSLKINALLQALREQ
                     GFDTTAIEQQEQEISRSLRQQGELVGRRLQLRQQQQQLSQQIVAAADEIARLAQGQAN
                     NATTSAGATQAGIYDLIEQDQRQAAESALDRLIDIDLEYVNQMNELRLSALRVQQMVM
                     NLGLEQIQKNAPMLEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTTVSQYSDLLALY
                     QQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDTIELRNQHGLAHLEKASARGQYSLL
                     LLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIG
                     RLMDAFRSTVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA
                     MSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAG
                     GKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI
                     TNLLSNALRFTDEGQIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKRG
                     GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGL
                     RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVD
                     GITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYL
                     QLQVNNDQSLDVSQLNEDAQLMGTEKIHEWLVLFTQHALPLLDEIDIARASQDSEKIK
                     RAAHQLKSSCSSLGMRIASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLHKKDLNAI
                     "
     gene            4375..5364
                     /gene="torT"
                     /locus_tag="OQQ19_003120"
     CDS             4375..5364
                     /gene="torT"
                     /locus_tag="OQQ19_003120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMAO reductase system periplasmic protein TorT"
                     /protein_id="HCS1804657.1"
                     /translation="MRVLLFLLLSLFMLSAFSADNLLRWHDAQHYTVQASTPLKAKRA
                     WKLCALYPSLKDSYWLSLNYGMQEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF
                     PDLQKQVANLPVIELVNALDDPLVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMP
                     GPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG
                     TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMIWQGELAVEQA
                     IRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK"
     gene            complement(5337..6029)
                     /gene="torR"
                     /locus_tag="OQQ19_003121"
     CDS             complement(5337..6029)
                     /gene="torR"
                     /locus_tag="OQQ19_003121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator TorR"
                     /protein_id="HCS1804658.1"
                     /translation="MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN
                     QPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTK
                     PLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTR
                     AEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQ
                     HGECYFLAADVC"
     gene            6149..7321
                     /gene="torC"
                     /locus_tag="OQQ19_003122"
     CDS             6149..7321
                     /gene="torC"
                     /locus_tag="OQQ19_003122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentaheme c-type cytochrome TorC"
                     /protein_id="HCS1804659.1"
                     /translation="MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTST
                     TEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQ
                     TFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQM
                     KVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAK
                     GDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGD
                     VQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHG
                     APEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDIAGKAHGDKKEEK"
     gene            7321..9869
                     /gene="torA"
                     /locus_tag="OQQ19_003123"
                     /pseudo
     CDS             7321..9869
                     /gene="torA"
                     /locus_tag="OQQ19_003123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415517.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
     gene            9866..10465
                     /gene="torD"
                     /locus_tag="OQQ19_003124"
     CDS             9866..10465
                     /gene="torD"
                     /locus_tag="OQQ19_003124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD"
                     /protein_id="HCS1804660.1"
                     /translation="MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLL
                     KSEPPLAAAVNELENCIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQ
                     EIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTA
                     LWQWLPEFAARCHQYDSFGFYAALSQLLLVLVECDHQNK"
     gene            complement(10558..10863)
                     /gene="cbpM"
                     /locus_tag="OQQ19_003125"
     CDS             complement(10558..10863)
                     /gene="cbpM"
                     /locus_tag="OQQ19_003125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone modulator CbpM"
                     /protein_id="HCS1804661.1"
                     /translation="MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWV
                     FDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP"
     gene            complement(10863..11783)
                     /gene="cbpA"
                     /locus_tag="OQQ19_003126"
     CDS             complement(10863..11783)
                     /gene="cbpA"
                     /locus_tag="OQQ19_003126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curved DNA-binding protein"
                     /protein_id="HCS1804662.1"
                     /translation="MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEA
                     RFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIF
                     GQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTL
                     NVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVS
                     PWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMP
                     PKPDENTAALWQQLADAQSSFDPRKDWGKA"
BASE COUNT         2891 a         3088 c         3182 g         2869 t
ORIGIN      
        1 cgtggagcct tttttatatc tgccttattt ttcttcaacg ctgtatgtat agtaagcgat
       61 aacctgttga ttattgaatc tttcggggag atggcttata acatttctta cctgaccagg
      121 gtaccgggaa ccaacacctt actggcgtgt tgctgtcttt taagaccaga agaggttaac
      181 agtgaatatt gaagagttaa aaaaacaagc cgaaacggaa atcgccgact ttatcgcgca
      241 aaaaatcgcc gagctgaaca agaatacagg gaaagaagtc tctgaaattc gcttcaccgc
      301 acgagaaaaa atgaccgggc ttgaaagtta tgatgtcaaa atcaaaataa tgtgattttg
      361 tgaacatcac cccgtgcgag gtgatgttcc gcttgttgct aatttagtga tcaatcattg
      421 gcgcttgtgg aattaagcgt cggtacaatt cctccggcac cgggctttgc catactcccg
      481 catacattgc gtaaccaatc accgcgaaca taatccccag aaccagtagc gtcattaacc
      541 agccagacaa cgcaaaagct tttttatttg ccgcaggttt ttgcagtgaa aaggtcaatg
      601 ttgaggctac cggacatgac tctacgcaag tcatacagcc ggtacattcc actgttcgta
      661 cctgaattaa tttatctacc gggatccgtg atgggcaatt ttttgcgcat ttgccacagc
      721 cgatacaact ttcggcattg cgacgaatct taaacggcga taatagcgaa accacgccca
      781 tcagcgcgcc atatgggcaa agataacgac accaggcatg gcgaataaac aggctggcaa
      841 tcagcaaaac ggtcacgctg attaatgtcg cggtccccat atgacgaaag aaatcgagca
      901 tttttacgtc catcaccacg ctgtagggcg acaacataaa atagtgaatc gcctgagcgg
      961 gcatcaataa cgcgatatag agaaaaaaac tcaacagcaa atacttcacg ccgcgcagag
     1021 gaatatccag ccagcgggga aggacacatt gccgaccaaa cagtttgtta ccgagatcgc
     1081 cgattaattc agaaagcgta ccaaccgggc ataaccatga gcaaaaggcc tttttgagta
     1141 atagactgat gacgataaaa gcgaccaata acagcatcgc ggagcgtgga cggacggtaa
     1201 ctgacctgtt gtaaggctat atttcagatt catcagaccg gcaatcggta gccagccttc
     1261 gatacctccc ggtctggcga caaatgtcgt gctacttgcc gtttcgtaat agcgcaccca
     1321 ataccagaac gtgatggcaa tataaatatt cattgccaac agtaataatt gcgtcgcttt
     1381 acgccaggtc gtggcattgc gccagtcatt ccacggtaat ttgccgcccg tcgtgcctgg
     1441 ccgccgctgc cagcgggttc tttttttctc tgccatgatt ttgtcagtcc gttaagttgc
     1501 ataccaaatg ccactatttt agttgttctt aactggctga tattgattca aatcgcgttc
     1561 aggtctttct tatgcaacca tgcttccaga gcggcaacac tgcgtgtaat ttcttcgtgt
     1621 ggaagggggg cagataatgg ctgctgctcc agttgtgcgc atagctggct ggcgatacgc
     1681 attcccaaac tcgagcaact gctttttagc tgatgcgcgg cacgctttat tttctcgcta
     1741 tcctgactgg cgcgggcaat gtcgatttca tcgagaagcg gcagggcatg ttgtgtaaat
     1801 aataccagcc attcgtggat cttctccgtc cccattaact gagcatcttc attgagttgc
     1861 gatacatcca gcgattgatc gttattgact tgcagttgga gatagtgcgc cagtaactga
     1921 ccgagcactt cacgcggcac cggtttaggg ataatcccgc ggaataatga actggtacgc
     1981 tggcgcagcg tttcgtcaat gacatgggcg ctaaagccaa tcaaaaccag cgacggatat
     2041 tgctgtgcca gttgtcgggc aagcgtaatg ccgtcgacat ccggcagatc aaaatccacc
     2101 agtgcggcag caaacggttc gctattttgc agtgtctcta aagcctgcgc ggcattgcca
     2161 acagcaacaa cctgcgcacc actggtgttc agcatctcaa cggtaattcg ctgggttagc
     2221 gggttatctt caattaacag caaacgtaaa ccgtcaagac gcaccgcctg attgactgtt
     2281 tttggcacgg gtgccgtggc aacacgtaac ggcaagcgta aacaaaaaca gcttccaacc
     2341 tccggcgtgc tggtggcgct cagttcgccg cccatcgcct gggccagacg gctactgata
     2401 gtcagtccca gcccggtgcc gccgcgtttg ccgcttacct gcacaaatgg ctggaagatt
     2461 tctgccagtt tcgcgggatc aataccgcag ccgctgtctt ccacttcgac cagccattgc
     2521 tcgccatcag tgcggctacg taaaacgatc tgcccttcgt cagtaaaacg cagggcgttg
     2581 ctcaacaggt tggttataac ctgacgaata cgtcgcggat cgcccattaa cgcggtcggt
     2641 acatcgtcgg caattgctgt tgccaggcga atcgggcgac ctttcacccg tccgctcatt
     2701 aattgcaggg tactttccag cagcgggcgc ggttcaaagg gctcatcgct gaccgaaaca
     2761 ttcttgccac ctgcttcgat agccgaataa tcgagaatat cgttgaggat ggtcagcaac
     2821 gattcgccag agtcggtaat cgcccgcaaa tcatcacgct gggcgttaag tgcggggtta
     2881 tctgccagca gttgagcagt gccgagaata ccgtacagcg gtgtgcggat ctcatggctc
     2941 atcgccgcca gaaaggccga ttttgcctgg ctggcttttt ctgcttccgc ccgtgcctgt
     3001 cggtgttcta tcaccagttc ctgcaattca gctgtacgcg ctttgacctg cgccgccagc
     3061 tgttcacggt ggcgattcag tgcatgaaca gtgctgcgaa acgcatccat cagccgcccg
     3121 atggtatcca gctcccgtac gccagcggtt tccgggaaag gggagtcaat atcaccgtcc
     3181 agcagccgtt gcagcgcctg cgtttgttcg gcaagtggac gcgtgactga gcgataaacc
     3241 acgcgccaaa ggatcagaat cagtgcgcaa agtgaaacca tccccagcaa taacaggctg
     3301 tattgcccgc gtgcactggc tttttccaga tgcgccagtc cgtgctgatt acgcagctca
     3361 atggtgtcga ccagctgact gacttcgcta ctaaactgcg cgaactgggc gatgttattt
     3421 tgtgcgagag tttgtaggtg attgctgatt tcactgtcct gctgatacag cgccagcaaa
     3481 tcgctatatt ggctaacggt agttaacgtt gttgcgacct gcgcacgaac acccggatct
     3541 tcaatgcgta tttgccgacg ttgcagaatt ttcaccgcat tattgagctg cttttccagc
     3601 attggtgcat ttttctggat ctgctccagc cccagattca tcaccatttg ctgcacccgc
     3661 agagcgctaa ggcgcagttc attcatctgg ttaacatact caagatcgat atcaatcagc
     3721 cgatcgagtg cactttcagc agcctgacgc tgatcttgtt cgatcaaatc gtaaatcccg
     3781 gcctgggtcg ctccagcgga agttgtcgca ttattcgcct gaccttgcgc caggcgtgcg
     3841 atctcatcgg cggcagcgac tatctgctga ctgagttgct gttgttgctg gcgtagttgc
     3901 agacgccgcc ccaccagttc cccttgctga cgtaacgaac gggagatctc ctgctcctgt
     3961 tgttcaatag cggtggtatc aaaaccttgt tcccgtaacg cttgcagcaa cgcattaatc
     4021 ttcaggcttt gtgcggtgag cattcgcccc tgcgcctgcc acatcttttc gttatcggca
     4081 ctggtcaggt tctgcgcggc gaaaagttcc caggcgctgg cttcgctcaa ctggcgcgcc
     4141 atattcatgg taggaatcaa tgcctgagtg ttgtcttttt ccacctggct gataaagcgc
     4201 aggttgtacc atcccaccag ggtactggtc agggttaaca gcgccatcag ggcaaagccc
     4261 atccagagtc ttcgggtcag ggttaaattc acggtcggtg cactttaggt gaaaaaggtt
     4321 gagtcgcaaa gcagaatgca tctagcataa agccttatta ttgattaggc tatcatgcgc
     4381 gtactgctat ttttacttct ttcccttttc atgttatcgg cattttcggc tgataacctg
     4441 ttgcgctggc atgatgcgca gcattacacg gtgcaagcct ctacgccgct taaagccaaa
     4501 cgcgcatgga aactgtgcgc gctttatccc agcctgaaag attcatactg gttatcgttg
     4561 aactatggta tgcaggaggc aggcggctac agccagttgg ctacccagca agcacaaatc
     4621 gaccagtgta aacagtgggg cgcagaggcc attttgctcg gtagtagcac tacgtcattt
     4681 cccgacctgc aaaagcaggt agcaaatctg ccggtgatcg aactggtaaa tgctcttgat
     4741 gatcccctgg tgaaaagccg cgttggtgta ccctggtttc agatgggcta tcaacctggg
     4801 cgatatttgg tgcaatgggc gcacggtaaa ccactgaacg tgctgttgat gcccggaccc
     4861 gataatgccg ggggcagtaa agagatggtc gagggttttc gcgcagccat tgccggaagc
     4921 ccggtgcgta ttgttgatat tgcgcttggt gataacgata ttgaaatcca gcgtaacctg
     4981 ttgcaggaga tgctggaacg ccacccagaa atcgacgtcg ttgccggaac ggccattgcg
     5041 gcagaggcgg caatgggtga agggcgtaac ctgaaaacgc cgcttaccgt ggtgtcgttt
     5101 tatctttcac atcaggtgta tcgcgggctg aagcggggaa gagtgattat ggctgccagc
     5161 gatcaaatga tctggcaggg ggaactggcg gttgagcagg ccatcaggca attacagggg
     5221 caatcggtgt ctgataatgt cagcccaccg attttagttc tgacgccgaa aaatgccgac
     5281 cgtgaacata ttcgccgctc gctgtcacca gggggatttc gtccggtcta tttttatcag
     5341 cacacatcag cggctaagaa ataacattca ccatgttgcg tcaccagtaa atccgcgctg
     5401 agtttatgac gtaaacgacg aattaacaca tcgacggtgc gcaggtcagg gttttccacc
     5461 cgacgcgcag aaagcatacg tagcagacgt tcacggctga gaatttcgcc cggattcgtc
     5521 acaaatgcca ccaacatttc atactctgcg cgggtcagtt taatcggctc gccatcccgc
     5581 tccagcgtat ggcgcgacac attcaggcaa taaccggcaa agcgatagca gttgtcctga
     5641 gtgtgcggtt gagcttgtcg cgcgaggtcg attcgccaga gcagattttt cacccgtact
     5701 accagttcgc gcagttccag cggtttggtg acgtaatcgt ctgcgcccat ttccagccca
     5761 acaatacggt caatccgatc gctgcgtccg gtaaccagaa taatccccac cgttgagcgt
     5821 tctcgcaggg cgcgggttaa catcaggcca ttttcatcgg gtaagttgat atccagcaga
     5881 attaaatcta ccggctgatt ctgcataatt tcccgcagcc cggcaccgct cgctgtaacg
     5941 gaaacggtat acccctcctg agtgaagtaa gattgtaatc gcgcctgggt aaccggctca
     6001 tcttcaacaa taacaatgtg atgtggcatc agagggtttt actcattctg ttcatattct
     6061 gccgtaagcc gttcatcctg accagtgccg ctgttcatat ttgctcatta agatcgcttc
     6121 actaaaccat aattttacag gggctattat gcggaaactc tggaacgcgc tacgccgacc
     6181 cagtgctcgt tggtcggtac tggcgctggt cgcaattggg attgtgattg gcattgcgct
     6241 gattgtattg ccacacgttg ggatcaaagt caccagcaca accgaatttt gtgtcagttg
     6301 ccacagtatg caaccggtgt atgaagaata taaacagtcg gtgcatttcc agaacgcctc
     6361 cggcgtgcga gctgaatgcc atgactgtca tatcccgccg gatattccag gcatggtgaa
     6421 gcgcaaactg gaagcgagca atgatatcta ccagaccttt attgctcact ccattgatac
     6481 acctgaaaaa ttcgaagcca aacgcgcgga acttgccgag cgtgaatggg cgcgaatgaa
     6541 agaaaacaac tcggcaacct gccgctcctg ccataactac gatgcgatgg atcatgcgaa
     6601 gcagcatcct gaagcggcac gtcagatgaa ggtggcagcg aaagataatc aatcctgcat
     6661 cgactgtcat aaaggtattg cccaccagtt accggatatg agtagcggct tccgtaagca
     6721 gttcgatgag ctgcgcgcca gtgctaatga cagtggtgac acgctgtact ctattgatat
     6781 taagccaatt tatgcggcga aaggcgataa agaagcctct ggttctctgc tgcctgcttc
     6841 ggaagtgaaa gtccttaaac gtgacggcga ctggctgcaa attgaaatta ccggctggac
     6901 ggaaagcgcc ggacgtcagc gtgtactcac ccaattccca ggtaaacgca tctttgttgc
     6961 ctcgattcgt ggtgatgtgc agcagcaggt aaaaacgctg gagaaaacca ccgttgccga
     7021 caccaatacc gagtggagca agttgcaggc cactgcgtgg atgaagaaag gtgatatggt
     7081 gaacgatatc aaaccgatct gggcttatgc ggattcgttg tacaacggca cctgtaacca
     7141 gtgccacggc gcaccggaaa tctctcactt tgatgctaac ggctggattg gcacgctcaa
     7201 cggcatgatt ggctttacca gtctcgataa acgtgaagaa cgcaccttgt tgaaatatct
     7261 gcaaatgaat gcgtctgaca tcgcaggtaa ggctcacggc gataagaagg aagaaaaata
     7321 atgaacaata acgatctctt tcaggcatca cgtcggcgtt ttctggcaca actcggcggc
     7381 ttaacagtcg ccgggatgct ggggccgtca ttgttaacgc cgcgcagtgc gactgcggcg
     7441 caagcggcgg atgtcatctc gaaagagggc attcttaccg ggtcgcactg gggggctatc
     7501 cgcgcgacgg tgaaggatgg tcgctttgtg gcggcaaaac cgttcgaact ggataaatat
     7561 ccgtcgaaaa tgattgccgg attgccggat tgccggatca cgtacacaac gcggcgcgta
     7621 ttcgttatcc gatggtacgc gtggactggc tgcgtaagcg ccatctcagc gatacctccc
     7681 agcgcggtga taaccgtttt gtgcgcgtga gctgggatga agccctcgac atgttctatg
     7741 aagaactgga acgcgtgcag aaaactcacg ggccgagtgc cttgctgacc gccagtggtt
     7801 ggcaatcgac ggggatgttc cataacgctt cggggatgct ggcgaaagct attgccttgc
     7861 atggtaatag cgttggtacg ggcggagatt actctaccgg tgctgcgcag gtgatcctgc
     7921 cgcgcgtagt cggttcgatg gaagtgtatg aacagcaaac ctcctggccg ctggtattgc
     7981 agaacagcaa aaccattatg ctgtggggct ccgatttgct gaaaaaccag caagcgaact
     8041 ggtggtgccc ggatcacgat gtttatgaat attacgagca actaaaagcg aaagtcgccg
     8101 ccggtgaaat tgaggtcatc agcatcgatc cggttgtcac atccacccat gagtatctgg
     8161 ggcgcgagca tgtgaagcac attgcggtta acccgcaaac tgacgtgccg ctgcaactgg
     8221 cgctggcgta tacgctgtac agtgaaaacc tgtacgacaa aaacttcctc gctaactact
     8281 gtgtaggttt tgagcagttc ctgccgtatc tgctgggtga gaaagacggt cagccgaaag
     8341 atgccgcatg ggctgaaaaa ctgaccggca ttgatgccga aaccattcgt gggctggcgc
     8401 ggcagatggc ggcgaacaga acgcaaatta ttgctggctg gtgcgtgcag cgtatgcagc
     8461 acggtgaaca gtgggcgtgg atgattgtgg ttctggcggc gatgctgggg caaattggcc
     8521 tgccaggtgg tggttttggt tttggctggc actacaacgg cgcaggcacg ccggggcgta
     8581 aaggcgttat tctgagtggt ttctccggct ctacgtcgat tccgcctgtt cacgacaaca
     8641 gtgactacaa aggctacagc agcaccattc cgattgcccg ttttatcgat gcgatcctcg
     8701 aaccggggaa agtgatcaac tggaacggta aatcggtaaa actgccgcca ctgaaaatgt
     8761 gtatttttgc cggaactaac ccattccatc gccatcagca gatcaaccgc attatttaag
     8821 gctggcgcaa gctggaaacg gttatcgcca tagataacca gtggacctca acctgccgct
     8881 ttgccgatat cgtactgcct gcgaccacgc agtttgagcg taacgatctc gaccagtacg
     8941 gcaaccactc caaccgtggc attatcgcca tgaaacaggt ggtgccgccg cagttcgagg
     9001 cgcgcaacga ctttgatatt ttccgcgagc tgtgccgtcg ctttaatcgc gaagaagcct
     9061 ttaccgaagg gctggacgaa atgggctggc tgaaacgcat ctggcaggaa ggtgtacaac
     9121 aaggcaaagg acgcggcgtt catctgccag cgtttgatga cttctggaat aacaaagagt
     9181 acgtcgagtt tgaccatccg cagatgtttg ttcgccacca ggcattccgc gaagatccgg
     9241 atctcgaacc gctgggcacg ccgagtggcc tgattgagat ctactcgaaa accatcgccg
     9301 atatgaacta cgacgattgt caggggcatc cgatgtggtt tgagaaaatc gaacgctccc
     9361 acggtgggcc cggctcgcag aagtatccgt tgcatctgca atctgtgcat ccggatttcc
     9421 gacttcactc gcagttatgt gagtcggaaa ctctgcgtca gcaatatacg gtagcgggta
     9481 aagagccagt attcattaac ccgcaggatg ccagcgcgcg cggtattcgt aacggtgatg
     9541 tggtacgcgt ctttaacgct cgcggtcagg tgttggcagg ggcagtagtt tctgaccgct
     9601 atgcacccgg cgtggcacga attcacgaag gggcatggta cgatccagat aaaggcggcg
     9661 agcctggtgc gctgtgcaaa tacggtaacc ccaacgtgct gaccatcgac atcggtactt
     9721 cgcagctggc gcaggcgacc agtgcgcaca ctacgctggt ggaaattgag aagtacaatg
     9781 gagcagtgga gcaggtgacg gcgtttaacg gccctgtgga gatagtggcg cagtgcgaat
     9841 atgttcccgc gtcgcaggtg aaatcatgac cacgctgaca gcacaacaga ttgcctgtgt
     9901 ttacgcctgg ctggcgcagt tgttctcccg tgaactggac gatgaacaac tgacgcaaat
     9961 cgccagtgcg cagatggcgg aatggttttc gttgctgaaa agcgaaccgc cgctggctgc
    10021 ggcggtgaat gagctggaaa actgtattgc cacgctgaca gtacgtgacg atgcccgtct
    10081 ggaactggcc gctgactttt gcggcctgtt tttgatgact gataagcagg cggcgctgcc
    10141 gtatgcatcg gcctacaaac aggacgagca agagattaaa cgcttgttag ttgaggcagg
    10201 gatggaaacc agcggcaatt tcaacgaacc ggcagaccat ctggcgatct atctcgagtt
    10261 gttgagtcat ctgcattttt cgctgggaga ggggaccgtt cctgcgcgaa gaatcgacag
    10321 tttgcggcaa aaaacactga cggcgctgtg gcaatggtta ccagagtttg ctgcgcgttg
    10381 ccatcagtat gacagctttg gtttttacgc ggcactaagc cagttattgc tggtgttagt
    10441 ggagtgcgac caccaaaaca aataacgtcg tttatgcgcc tgaaaagacg cgtttagcgt
    10501 cgcatcaggc attatggcgc agttgccgga tgcgtcatca catccggcaa acacacatca
    10561 cggatgagct acaaaccggg aaagccgctg gcgtagcagg cggttttcct gcttcaggtg
    10621 tgcaatatca tccattaacg tcagcgccac cgcgatcccc ggccagtcca gagccagttc
    10681 atgacgcagg cgtaccgcgc gttgcaccac aatggcggca tggtcgtcaa atacccaggt
    10741 tgtttcctgg atctcacgcg gttcaaccac ccccaaaccg acaatttcat tcaactcctc
    10801 ttcagagatg ccggtatgca ggcaaaattc ggtaatagta aaagtcaccg taacattagc
    10861 catcatgctt tcccccaatc tttacgtgga tcaaaagacg actgggcgtc tgccagttgc
    10921 tgccacagcg cggcagtgtt ttcatccggt ttcggcggca tcacgatttt cagtaccgca
    10981 tacagatcgc cggtctgttt tttgctcacc agacctttgc ctttaacgcg caatcgttgc
    11041 ccggcctggc tgcctggcgg gatagtcagc aaaatgcttt ctttcagtgt tggaacggtg
    11101 actttagcac ccagcgccgc ttcccacggg ctaaccggca ccacaatttc cagatcctgg
    11161 ccgacaatat cgaacagcgg atgtggcgca atatgaatca ccagccacaa atcgccattt
    11221 ggaccaccgt tttcgcccgg cgtcccctgg cctttcagac ggatgcgttg accattgccg
    11281 acgcccgccg ggatcttcac attcagcgtt ttcgggattt cctgttcgat catgccaaag
    11341 gcgttataaa ccggcaggtt atagctgatg gtacgcttat gctcagtcag cgtttcttcg
    11401 aggaataccg ccacttcgat ttcaatatcg tggccgcgtg cggcggggcg ttgacggctc
    11461 tggcgggcat gctgaccgaa aattgacgag aagatatcgt caaaatcttc ggcattaaaa
    11521 ctctgaccgt cgccatgatg gaactgacgg ttaaattgcg gatcgttgcg atgttgccac
    11581 atctgatcat actcagcgcg acgttgttca tcacttaaca cttcccaggc ttcagcgacc
    11641 tctttgaagc gggcttcggc atccggttct ttgctgacat caggatggta tttacgggcc
    11701 agtcgacgat aggcggtctt gattgtcttg agatcgtccg tcggtttcac gcccatgatg
    11761 gcgtaataat cctttaattc catagcgtta tctcgcgtaa atcaacacaa attgaaggaa
    11821 cccctgtaag gtaactccta taagtgtagg gtaatcctca aaatttcata tgccaacaca
    11881 gaatatgtta ttgaaatcat cgtggagagg aggtcgccat caatatgggt tgctgaacat
    11941 attttaaaca ggtgaaaaag ggtgagcgat ttttgatagt tgaaccaggc actttaagtt
    12001 taactagggc gtcattattt attaaatttt
//
LOCUS       DAJVSY010000128        11926 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.128, whole genome shotgun sequence.
ACCESSION   DAJVSY010000128 DAJVSY010000000
VERSION     DAJVSY010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11926)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11926)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11926
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.128"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            217..1326
                     /gene="livK"
                     /locus_tag="OQQ19_003127"
     CDS             217..1326
                     /gene="livK"
                     /locus_tag="OQQ19_003127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter substrate-binding protein LivK"
                     /protein_id="HCS1804663.1"
                     /translation="MKRNAKTIIAGMIALAISHTAMADDIKVAVVGAMSGPIAQWGDM
                     EFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS
                     SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVK
                     PQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENID
                     FVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYD
                     QDPANQGIVDALKADKKDPSGPYVWITYAAVQSLATALERTGSDEPLALVKDLKANGA
                     NTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTAAK"
     gene            1374..2300
                     /gene="livH"
                     /locus_tag="OQQ19_003128"
     CDS             1374..2300
                     /gene="livH"
                     /locus_tag="OQQ19_003128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010436488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter permease LivH"
                     /protein_id="HCS1804664.1"
                     /translation="MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHG
                     EVYMIGSYVSFMIIAALMMMGIDTGWLLVAAGFVGAIVIASAYGWSIERVAYRPVRNS
                     KRLIALISAIGMSIFLQNYVSLTEGSRDVALPSLFNGQWVVGHSENFSASITTMQAVI
                     WIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAV
                     AGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGIAEALSSAYLS
                     TEYKDVVSFALLILVLLVMPTGILGRPEVEKV"
     gene            2297..3574
                     /gene="livM"
                     /locus_tag="OQQ19_003129"
     CDS             2297..3574
                     /gene="livM"
                     /locus_tag="OQQ19_003129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched chain amino acid ABC transporter
                     permease LivM"
                     /protein_id="HCS1804665.1"
                     /translation="MKPMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDIR
                     WQWVFIGTAVVFFFQLLRPAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVA
                     WPFMVSRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYY
                     GLGFWTCLPIAGLMAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGG
                     PNGISQIPKPTFFGLEFSRTAREGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSL
                     FVINRLLRMPLGRAWEALREDEIACRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQ
                     GFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEYSMLMLGG
                     LMVLMMIWRPQGLLPMTRPQLKLKNGAAKGEQA"
     gene            3571..4338
                     /gene="livG"
                     /locus_tag="OQQ19_003130"
     CDS             3571..4338
                     /gene="livG"
                     /locus_tag="OQQ19_003130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000084170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter ATP-binding protein LivG"
                     /protein_id="HCS1804666.1"
                     /translation="MSQPLLSVNGLMMRFGGLLAVNNVNLELYPQEIVSLIGPNGAGK
                     TTVFNCLTGFYKPTGGTILLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLL
                     VAQHQQLKTGLFSGLLKTPSFRRAQSEALDRAATWLERIGLLEHANRQASNLAYGDQR
                     RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVM
                     GISDRIYVVNQGTPLANGTPEQIRNNPDVIRAYLGEA"
     gene            4340..5053
                     /gene="livF"
                     /locus_tag="OQQ19_003131"
     CDS             4340..5053
                     /gene="livF"
                     /locus_tag="OQQ19_003131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312328.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter ATP-binding protein LivF"
                     /protein_id="HCS1804667.1"
                     /translation="MEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGK
                     TTLLGTLCGDPRAASGRIVFDDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLA
                     MGGFFAERDQFQERIKWVYELFPRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLL
                     LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLS
                     DTGDALLANEAVRSAYLGG"
     gene            5450..6121
                     /locus_tag="OQQ19_003132"
     CDS             5450..6121
                     /locus_tag="OQQ19_003132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000803216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HCS1804668.1"
                     /translation="MKPLHYTASALALGLALMGNAQAVTTIPFWHSMEGELGKEVDSL
                     AQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIK
                     PVYDVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGL
                     DPEQPPKTWQDLADYAAKLKASGMKCGYASGWQGWIQLENRHLPGDRRRHVRRAGSGH
                     HDADL"
     gene            6051..6254
                     /locus_tag="OQQ19_003133"
                     /pseudo
     CDS             6051..6254
                     /locus_tag="OQQ19_003133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000099274.1"
                     /note="with UgpEC is involved in the uptake of
                     glycerol-3-phosphate; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter permease"
     gene            6251..7096
                     /gene="ugpE"
                     /locus_tag="OQQ19_003134"
     CDS             6251..7096
                     /gene="ugpE"
                     /locus_tag="OQQ19_003134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000572177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter permease
                     UgpE"
                     /protein_id="HCS1804669.1"
                     /translation="MIENRPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAA
                     PMTLIPGTHLLENIHNIWVNGVGTNSAPFWRMLLNSFVMAFSITLGKITVSMLSAFAI
                     VWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATTTF
                     LFRQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWP
                     LLIITDVDLGTTVAGIKGMIATGEGTTEWNSVMAAMLLTLIPPVVIVLVMQRAFVRGL
                     VDSEK"
     gene            7098..8168
                     /gene="ugpC"
                     /locus_tag="OQQ19_003135"
     CDS             7098..8168
                     /gene="ugpC"
                     /locus_tag="OQQ19_003135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417907.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol 3-phosphate ABC transporter ATP
                     binding protein UgpC"
                     /protein_id="HCS1804670.1"
                     /translation="MAGLKLQAVTKSWDGKTQVIKPLTLDVADGEFIVMVGPSGCGKS
                     TLLRMVAGLERVTEGDIWINDQRVTEMEPKDRGIAMVFQNYALYPHMSVEENMAWGLK
                     IRGMGKQQIAERVKEAARILELDGLLKRRPRELSGGQRQRVAMGRAIVRDPAVFLFDE
                     PLSNLDAKLRVQMRLELQQLHRRLKTTSLYVTHDQVEAMTLAQRVMVMNGGVAEQIGT
                     PVEVYEKPASLFVASFIGSPAMNLLTGRVNNEGTHFELDGGIELPLNGGYRQYAGRKM
                     TLGIRPEHIVLSSQAEGGVPLVMDTLEILGADNLAHGRWGEQKLVVRLAHQERPTAGS
                     TLWLHLAENQLHLFDGETGQRV"
     gene            8165..8908
                     /gene="ugpQ"
                     /locus_tag="OQQ19_003136"
     CDS             8165..8908
                     /gene="ugpQ"
                     /locus_tag="OQQ19_003136"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HCS1804671.1"
                     /translation="MSNWPYPRIVAHRGGGKLAPENTLAAIDVGAKYGHKMIEFDAKL
                     SKDGEIFLLHDDNLERTSNGWGVVGELNWQDLLRVDAGSWYSKAFKGEPLPLLSQVAE
                     RCREHGMMANIEIKPTTGTGPLTGKMVALAARQLWAGMTPPLLSSFEIDALEAAQLAA
                     PELPRGLLLDEWRDDWRELTARLGCVSIHLNHKLLDKARVMQLKDAGLRILVYTVNKP
                     QRAAELLRWGVDCICTDAIDVIGPNFTAQ"
     gene            complement(8895..9335)
                     /locus_tag="OQQ19_003137"
     CDS             complement(8895..9335)
                     /locus_tag="OQQ19_003137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2756 family protein"
                     /protein_id="HCS1804672.1"
                     /translation="MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQ
                     TQQIQQKGMLNQQLKTQTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGG
                     MLNSNRNPDSSLNQQHMLPERRNGDMLNQPSTPQPDIPLKTIGP"
     gene            9455..11188
                     /gene="ggt"
                     /locus_tag="OQQ19_003138"
     CDS             9455..11188
                     /gene="ggt"
                     /locus_tag="OQQ19_003138"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HCS1804673.1"
                     /translation="MIKPTFLRRVAIAALLSGSCFSAVAAPPVSYGVEEDIFHPVRAK
                     QGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSKN
                     GNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYGT
                     MPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDK
                     LVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPIS
                     GDYRGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAYADR
                     SEYLGDPDFVKVPWQALTNKAYAKSIADQIDINKAQPSSEIRPGKLAPYESNQTTHYS
                     VVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGDANA
                     VGPNKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGMNVAEATNA
                     PRFHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALKEAMGSTQSIMVGPDGELYGASD
                     PRSVDDLTAGY"
     gene            complement(11226..11510)
                     /locus_tag="OQQ19_003139"
                     /pseudo
     CDS             complement(11226..11510)
                     /locus_tag="OQQ19_003139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417903.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YrhB family protein"
     gene            complement(11710..11865)
                     /locus_tag="OQQ19_003140"
     CDS             complement(11710..11865)
                     /locus_tag="OQQ19_003140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804674.1"
                     /translation="MEKLTTELHSLSEMDRRHVVSILAEIANGYDDFNDMLIYLEFYP
                     NHKILIS"
BASE COUNT         2707 a         2956 c         3387 g         2876 t
ORIGIN      
        1 caaaggcact tttttctgtt tatctatcaa taaattcaga atattatctg ttcttaatcg
       61 actgaaagat agggatttta atcactatta tcacaaaata ctgcgctaaa cccttaatca
      121 gacaggcaaa aacagtgcag tataaaaaaa gaacagtctg atttgttaac acataaaaac
      181 aaagcaacac aacatcacga atggggattt ttgactatga aacggaatgc gaaaactatc
      241 atcgcaggga tgattgcact ggcaatttca cacaccgcta tggctgacga tattaaagtc
      301 gccgttgtcg gcgcgatgtc cggcccgatt gcccagtggg gcgatatgga atttaacggc
      361 gcgcgtcagg cgattaaaga cattaatgcc aaagggggaa ttaagggcga caagctggtt
      421 ggcgtggaat atgacgacgc ctgcgacccg aaacaagccg ttgcggtcgc caacaaaatc
      481 gttaatgacg gcattaaata cgttattggt catctgtgtt cttcttctac ccaacctgca
      541 tcagatatct acgaagacga aggtattctg atgatctcac cgggagcgac caacccggag
      601 ctgacccaac gcggttatca acacattatg cgtactgccg ggctggactc ttcccagggg
      661 ccaacggcgg caaaatacat tcttgagacg gtgaagcccc agcgcatcgc catcattcac
      721 gacaaacaac agtatggcga agggctggcg cgttcggtgc aggacgggct gaaagcggct
      781 aacgccaacg tcgtcttctt cgacggtatt accgccgggg agaaagattt ctccgcgctg
      841 atcgcccgcc tgaaaaaaga aaacatcgac ttcgtttact acggcggtta ctacccggaa
      901 atggggcaga tgctgcgcca ggcccgttcc gttggcctga aaactcagtt tatggggccg
      961 gaaggtgtgg gtaacgcatc attgtcgaat attgccggtg atgctgccga aggcatgttg
     1021 gtcactatgc caaaacgcta tgaccaggat ccggcaaacc agggcatcgt tgatgcgctg
     1081 aaagcagaca agaaagatcc gtccgggcct tatgtctgga tcacctacgc ggcggtgcaa
     1141 tctctggcga ctgcccttga gcgtactggc agcgatgagc cgctggcgct ggtgaaagat
     1201 ttaaaagcta acggtgcaaa caccgtgatt gggccgctga actgggatga aaaaggcgat
     1261 cttaagggat ttgattttgg tgtcttccag tggcacgccg acggttcatc cacggcagcc
     1321 aagtgatcat cccaccgccc gtaaaatgcg ggcgggttta gaaaggttac cttatgtctg
     1381 agcagttttt gtatttcttg cagcagatgt ttaacggcgt cacgctgggc agtacctacg
     1441 cgctgatagc catcggctac accatggttt acggcattat cggcatgatc aacttcgccc
     1501 acggcgaggt ttatatgatt ggcagctacg tctcatttat gatcatcgcc gcgctgatga
     1561 tgatgggcat tgataccggc tggctgctgg tggcggcggg attcgtcggc gcaatcgtca
     1621 ttgccagcgc ctacggctgg agtatcgaac gggtagccta tcgcccggtg cgtaactcta
     1681 agcgcctgat tgcgctcatc tcggcaatcg gcatgtccat cttcctgcaa aactacgtta
     1741 gcctgactga aggttcgcgt gacgtggcgc tgcccagtct gtttaacggt cagtgggtgg
     1801 tggggcatag cgaaaacttc tctgcctcta ttaccaccat gcaggcagtg atctggattg
     1861 ttactttcct cgccatgctg gcgctgacga ttttcattcg ttattcccgt atggggcgcg
     1921 cctgccgtgc ctgcgcggaa gatctgaaaa tggcgagcct gcttggcatc aacaccgacc
     1981 gggtgattgc tttgaccttt gttattggcg cggcgatggc ggcagtggct ggcgtactgc
     2041 tcggtcagtt ctacggcgtc attaacccct atatcggctt tatggccggg atgaaagcct
     2101 ttaccgctgc ggtgctcggt gggattggca gcattccagg ggcgatgatt ggtgggctga
     2161 tcctggggat tgcggaggcg ctctcttctg cctatctgag tacggaatat aaggatgtgg
     2221 tttcatttgc cctgctgatt ctggtgctgc tggtgatgcc gaccggtatt ctgggtcgcc
     2281 cggaggtaga gaaagtatga aaccgatgca tattgcaatg gcgctgctct ctgccgcgat
     2341 gttttttgtc ctggcgggcg tctttatggg cgtgcaactg gagctggatg gcaccaaact
     2401 ggtggtcgac acggcttcag acatccgttg gcagtgggtg tttatcggca cggcggtggt
     2461 ctttttcttc cagcttttgc gaccggcttt ccagaaaggg ctaaaaagcg tttccggacc
     2521 gaagtttatt ctgcccgcga ttgatggctc cacggtgaag cagaaactgt tcctcgtggc
     2581 gctgttggtg cttgcggtgg cgtggccgtt tatggtgtca cgtgggacgg tggatatcgc
     2641 cactctgacc atgatctaca ttatcctcgg tctcgggctg aatgtggttg ttggtctttc
     2701 tggtctgctg gtgctggggt acggcggttt ttacgccatc ggcgcttaca cctttgcgct
     2761 gctcaatcac tattacggct tgggcttctg gacttgtctg ccgattgccg ggttaatggc
     2821 agcggcggcg ggcttcctgc tcggctttcc ggtgctgcgt ctgcgcggtg attatctggc
     2881 gatcgttacc ctcggcttcg gcgaaattgt gcgcatattg ctgctcaata acaccgaaat
     2941 taccggcggc ccgaacggaa tcagtcagat cccgaaaccg actttcttcg gccttgagtt
     3001 cagccgtacc gcccgtgaag gcggttggga cacgttcagt aatttctttg gcctgaaata
     3061 cgatccctcc gatcgcgtca tcttcctgta tctggtggcg ttgctgctgg tggtgctaag
     3121 cctgtttgtc attaaccgcc tgctgcggat gccgctgggg cgtgcgtggg aagcgttgcg
     3181 tgaagatgag atcgcctgcc gttcgctggg cttaagcccg cgtcgtatca agctgaccgc
     3241 ttttaccatc agtgccgcgt ttgccggttt tgccggaacg ctgtttgctg cgcgccaggg
     3301 ctttgtcagc ccggaatcct tcacctttgc tgaatcggcg tttgtactgg cgatagtggt
     3361 gctcggcggt atgggatcgc agtttgcggt gattctggcg gcaattttgc tggtggtgtc
     3421 gcgcgagttg atgcgtgatt tcaacgaata cagcatgtta atgctcggtg gtttgatggt
     3481 gctgatgatg atctggcgtc cgcagggctt gctgcccatg acgcgcccgc aactgaagct
     3541 gaaaaacggc gcagcgaaag gagagcaggc atgagtcagc cattattatc tgtgaacggc
     3601 ctgatgatgc gcttcggcgg cctgctggcg gtgaacaacg tcaatcttga actgtacccg
     3661 caggagatcg tctcgttaat cggtcctaac ggtgccggaa aaaccacggt ctttaactgc
     3721 ctgaccggat tctacaaacc cactggaggc accattttac tgcgcgatca gcatctggaa
     3781 ggtttaccgg ggcagcaaat tgcccgcatg ggcgtggtgc gtaccttcca gcatgtgcgt
     3841 ctgttccgtg aaatgacggt gattgaaaac ctgctggtgg cgcagcatca gcaactgaaa
     3901 accgggctgt tctctggcct gttgaaaacg ccatccttcc gtcgcgccca gagcgaagcg
     3961 ctcgatcgcg ccgcgacctg gcttgagcgc attggtttgc tggaacacgc caaccgtcag
     4021 gcgagtaacc tggcctatgg tgaccagcgc cgtcttgaga ttgcccgctg catggtgacg
     4081 cagccggaga ttttaatgct cgacgaacct gcggcaggtc ttaacccgaa agagacgaaa
     4141 gagctggatg agctgattgc cgaactgcgc aatcatcaca acaccactat cttgttgatt
     4201 gaacacgata tgaagctggt gatgggaatt tcggaccgaa tttacgtggt caatcagggg
     4261 acgccactgg caaacggtac gccggagcaa atccgtaata acccggacgt gatccgtgcc
     4321 tatttaggtg aggcataaga tggaaaaagt catgttgtcc tttgacaaag tcagcgccca
     4381 ctacggcaaa atccaggcac tgcatgaggt gagcctgcat atcaatcagg gcgagattgt
     4441 cacgctgatt ggcgcgaacg gggcggggaa aaccaccttg ctcggcacgt tatgcggcga
     4501 tccgcgcgcc gccagcgggc gaattgtgtt tgatgataaa gacattaccg actggcagac
     4561 ggcgaaaatc atgcgcgaag cggtagcgat tgtcccggaa gggcgtcgcg tcttctcgcg
     4621 gatgacggtg gaagagaacc tggcgatggg cggctttttt gccgaacgcg accagttcca
     4681 ggagcgcata aagtgggtgt atgaactgtt tccacgtctg catgagcgcc gtgttcagcg
     4741 ggcaggcacc atgtccggcg gtgagcaaca aatgctggcg attggtcgcg cgctgatgag
     4801 caacccgcgt ttgctgctac ttgatgagcc atcgctcggt cttgcgccga ttatcatcca
     4861 gcaaattttc gacaccatcg agcagctgcg cgagcagggg atgactatct tcctcgtcga
     4921 gcagaacgcc aaccaggcgc taaagctggc ggatcgcggc tacgtgctgg aaaacggcca
     4981 tgtggtgctc tccgataccg gcgatgcgct gctggcgaac gaagcagtga gaagtgcgta
     5041 tttaggcggg taataacacg ttgattgata aggagtcaaa agactccttt gagacaggtg
     5101 acaaatgtaa aattgcctga tgcgctgcgc ttatcaggcc tactgggtga gttgcaatat
     5161 attgaatttg cacgatcttg taggccggat aaggcgttta cgccgcatcc ggcatgaaac
     5221 gatgagtaat ctgtagagtt tgattcagac cttctatttt tccgcttatc cgtgccccat
     5281 ctcccatttt ccctcaccca cgccgtcacc gccttgtcat ctttctgaca ccttactatc
     5341 ttacaaatgt aacaaaaaag ttatttttct gtaattcgag catgtcatgt taccccgcga
     5401 gcataaaacg cgtgaattcg cgcattcggt acaacaagag agataaacga tgaaaccgtt
     5461 acattataca gcttcagcac tggcgctcgg actggcgtta atggggaatg cacaggcagt
     5521 gacgaccatt ccgttctggc attctatgga aggggaactg ggtaaagagg tggattctct
     5581 ggcccaacgt tttaacgccg aaaatccgga ttacaaaatt gtaccgacct ataaaggcaa
     5641 ctacgaacag aatttaagcg cggggattgc cgcatttcgt accggcaacg ctccggctat
     5701 tttgcaggtt tatgaagttg gcaccgccac catgatggca tcgaaagcca ttaaaccggt
     5761 atatgacgtg tttaaagagg cggggattca attcgatgag tcgcagtttg tgccgacggt
     5821 ttccggttac tactccgaca gcaaaacggg ccacttactc tcccagccat tcaacagctc
     5881 gactcccgtt ctctattaca acaaagacgc cttcaagaaa gcggggttag acccggaaca
     5941 gccgccgaaa acctggcagg atctggcgga ctatgccgcg aaactgaaag cctccggcat
     6001 gaagtgcggc tacgccagcg gctggcaggg ctggatccaa ctggaaaatc gacaccttcc
     6061 cggtgatcga cgccgccacg tccggcgggc cggttcaggc caccacgacg ctgatttata
     6121 agatctaccg cgaaggtttt accggactgg atctggcttc gtctgccgca cagtcggtgg
     6181 tgttgatgtt cctcgtcatc gtgctgacgg tggtgcagtt ccgctatgtt gaaagcaagg
     6241 tgcgttacca atgattgaga accgtccgtg gctgacgata ttcagccata ccatgctgat
     6301 cctcgggatc gcggtgattc tcttcccgct gtacgtggcg tttgtcgcgg cgacgctgga
     6361 taaacaggcc gtctatgccg cgccgatgac gctcatcccc ggcacacatc tgctggaaaa
     6421 tatccacaac atctgggtta acggggtagg tacgaatagc gcgccgttct ggcggatgtt
     6481 gcttaacagc tttgtgatgg cgttcagcat tacgctcggc aaaattaccg tctcgatgct
     6541 ctcggcattt gccattgtct ggtttcgttt tccgctacgt aacctcttct tctggatgat
     6601 ttttatcacc ctgatgctgc cggttgaagt acgtatcttc ccgacggtgg aagtcatcgc
     6661 caacctgaag atgctcgaca gctacgccgg tttaacgctg ccgctgatgg cctcggcgac
     6721 caccacgttt ctgtttcgcc agttctttat gacgctgccg gatgaactgg tggaagcggc
     6781 gcggatcgac ggcgcatcgc caatgcgctt cttttgcgac atcgtttttc cgctctccaa
     6841 aactaatctg gcggcgctgt ttgtgatcac ctttatttac ggctggaacc agtatttgtg
     6901 gccgttgttg attattaccg acgtggatct cggcaccacc gtggcaggga tcaaagggat
     6961 gatcgccact ggcgaaggca ccacggaatg gaactcagtg atggcggcga tgttgttaac
     7021 cctgatccca ccagtagtga ttgttttagt gatgcagcgt gccttcgtgc gcggcctggt
     7081 cgatagtgag aaataagatg gcaggactga aattacaggc agtaaccaaa agctgggatg
     7141 gcaaaaccca ggtcattaaa ccgctgaccc ttgatgtggc tgatggcgaa tttatcgtga
     7201 tggtcgggcc gtctggctgc gggaaatcga cgctgctgcg tatggttgcc gggctggagc
     7261 gggtgaccga aggcgatatc tggatcaacg accagcgcgt gactgaaatg gagccgaaag
     7321 atcgcgggat tgcgatggtg ttccagaact acgcgcttta tccgcatatg agcgtcgaag
     7381 aaaacatggc gtgggggctt aaaattcgcg gcatgggcaa gcagcaaatt gccgagcgcg
     7441 ttaaagaagc ggcgcgcatt ctggagctgg acggtctgct caaacgtcgc ccgcgtgagc
     7501 tatccggcgg tcagcgtcag cgtgtagcga tgggccgcgc gattgtgcgc gatccggcgg
     7561 tgttcctgtt tgatgagccg ctctctaacc tcgatgccaa gctgcgcgtg cagatgcgtc
     7621 ttgaactgca acagttgcac cgtcgcctga aaacgacttc actctacgtt actcacgatc
     7681 aggttgaagc gatgacgctc gcccagcgag taatggtgat gaacggcggc gttgccgaac
     7741 agattggcac accagttgaa gtctacgaaa agcccgccag cctgtttgta gcgagtttta
     7801 tcggcagtcc ggcgatgaac ctgctgacag gccgcgtgaa taacgaaggc acgcatttcg
     7861 aactggacgg cggtattgag ctgccgctaa acggtggcta ccgtcagtat gccgggcgta
     7921 aaatgactct cggcattcgc ccggaacata ttgtgctaag ctcgcaggca gaaggcggcg
     7981 taccgctggt gatggacacg ctggagatcc tcggcgcaga taacctggcg cacggacgct
     8041 ggggcgagca gaagctggtg gtgcgactgg cgcatcagga gcgcccgacg gcaggcagca
     8101 cgctgtggct gcatctggcg gaaaatcagc tgcatctttt tgatggtgaa acaggacaac
     8161 gagtatgagt aactggcctt atccccgcat cgtcgctcat cgtggcggcg gtaagctggc
     8221 cccggaaaac accctggcgg caatcgacgt cggggcaaaa tacggtcata agatgatcga
     8281 atttgacgcg aagttatcga aagatggcga gatcttcctg ctccatgacg acaatctcga
     8341 acgcaccagc aacggctggg gcgtcgtggg tgaactgaac tggcaggatt tactgcgcgt
     8401 ggatgcgggc agttggtaca gcaaagcgtt taaaggtgag ccgctgccgt tgctttcgca
     8461 ggtggcggaa cgctgtcgcg aacatgggat gatggcgaat atcgaaatca aacccaccac
     8521 tggcactgga ccattaacgg gcaaaatggt ggcgctggcg gcacgccaac tgtgggccgg
     8581 tatgacgccg ccgctgctgt catcgtttga gattgatgct ttagaagctg cacagctggc
     8641 ggcaccggaa ctgccgcgtg gtttattgct tgatgagtgg cgcgacgact ggcgcgaact
     8701 gaccgcgcgg ctgggctgcg tctctattca tctcaatcat aagttactcg ataaagcgcg
     8761 agtgatgcag ttgaaagacg ccggattacg gattctggtt tataccgtca ataaacccca
     8821 gcgcgcggca gagttgctgc gctggggcgt ggattgcatc tgtaccgatg cgattgacgt
     8881 gattggtccg aactttacgg cccaatagtt ttcaacggaa tgtcaggctg cggcgtgctg
     8941 ggctgattca gcatgtcgcc gtttctcctc tccggcagca tatgctgctg attcaacgaa
     9001 ctatccggat tacggttgct gtttaacatc ccgccgttgg tgttgggcag catttgctgc
     9061 cgggcgggat ttcgctcccc cggctgtgac tgcaacaccc gctgagaatt attgtttatc
     9121 tggttttcta aatgctgctg ttgcaactga gtttgcgttt tcagttgctg attcagcatc
     9181 cctttttgct ggatttgctg agtttgcatc tgggtttgca tccgctgctg gctgggtatc
     9241 tgataccccg gctggttagg gttgttcaga gtattaatgg gctgtgcaaa gccgacaaac
     9301 ggcaggagtg ccgtaagaat cagaagtcgt ttcatcgcgt atcctcctct gaagatatcc
     9361 tttaagttta ctcgcttccc gacaaaacga tgattaattc agagttatat accaggctta
     9421 gctggggttg ccccttaatc tctggagaat aacgatgata aaaccgacgt ttttacgccg
     9481 ggtagccatt gctgctctgc tctcaggaag ttgttttagc gccgtcgccg cgcctcctgt
     9541 ttcttacggc gtggaggaag atatcttcca tccggtacgc gcgaaacagg ggatggtggc
     9601 gtctgtcgat gccactgcca cccaagtggg ggtagatatt ctaaaggagg gcgggaatgc
     9661 cgttgatgcc gccgtggcgg tgggctacgc gctggcggta acgcatccgc aggcagggaa
     9721 tctgggcggt ggtggtttta tgctgatccg ctcgaaaaat ggcaatacca ccgctatcga
     9781 tttccgcgag atggcacccg ctaaagcgac ccgcgatatg ttccttgatg accagggcaa
     9841 cccggacagc aaaaaatcac tcacttcgca tctggcttcc ggcacgcccg gtacggtcgc
     9901 tggtttctcg ctggcgttgg ataagtacgg cactatgccg ttgaacaaag tggtgcagcc
     9961 cgcgttcaaa ctggcacgcg atggttttat cgttaacgat gctttggcag acgatctcaa
    10021 aacctacggt agtgaagtgt tgccgaatca cgaaaacagc aaagctatct tctggaaaga
    10081 gggcgaaccg ctgaaaaagg gcgacaagct ggtgcaggcg aacctggcaa agagcctgga
    10141 gatgattgcc gaaaacggcc cggacgaatt ctataaaggc acgatagcgg aacagattgc
    10201 ccaggagatg cagaaaaacg gtggcttgat cactaaagaa gatttagcgg cgtataaagc
    10261 ggtcgaacgc acaccgataa gtggcgatta tcgcgggtat caggtttact ccatgccacc
    10321 gccatcctcc ggcgggatcc atatcgtaca aatcctcaat attctggaaa acttcgatat
    10381 gaagaaatac ggctttggca gcgccgatgc gatgcaaatc atggcagaag cggagaaata
    10441 cgcctacgcc gaccgctcgg aatatcttgg cgacccggat tttgtcaaag taccgtggca
    10501 ggcgctgacc aataaagcct atgccaaatc tattgccgat caaattgata tcaataaagc
    10561 gcagccatcc agcgaaattc gccccggcaa gcttgcgcct tatgagagta atcaaactac
    10621 ccattactca gtggtggata aagatggtaa cgcggtggcg gtgacctata cgctgaacac
    10681 caccttcggt acgggcattg tcgcgggcga gagcggtatt ctgcttaata atcagatgga
    10741 tgatttctcc gctaaaccgg gcgtaccgaa cgtttacggg ctggtgggcg gtgatgccaa
    10801 cgccgtcggg ccgaataaac gtccgctgtc gtcaatgtca ccaacgattg tggtgaaaga
    10861 cggtaaaacc tggctggtca ccggtagccc tggcgggagc cggatcatca ctacagtgct
    10921 gcaaatggtg gtgaatagca tcgattatgg catgaacgtc gccgaagcga ccaatgcgcc
    10981 gcgtttccac catcagtggt tgccggacga gctgcgtgtc gaaaaagggt ttagcccgga
    11041 tacgctcaag ctgctggaag caaaaggtca gaaagtggcg ctgaaagagg cgatgggcag
    11101 tacacaaagc attatggttg ggccggacgg tgagttgtac ggcgcatccg acccgcgctc
    11161 ggtggatgat ttaacggcgg ggtactaagg ttagcggccc tcttcgtggg aagagggcta
    11221 ttttgtcagg gcaagccgaa ggtagccttt tttatttcgt aatcctgtag atattcttcc
    11281 agcggctttg ccgttcccag agaatgaatt tcaccactgt ctttatcaat aataaaaggt
    11341 gcgttaccag ctaagcgcgc ggcctcatct ccagtttcga gaaattctcg tgcttcgaaa
    11401 cagaaatacc agccctagct aaagcgtcca tgtagagtaa tgacgaccgg gagatctgca
    11461 tcatcaaggt aatggttcgc tttcgcgaat gcgtcgtgat aagtaatcat aattataata
    11521 aatattattg ttgagtgtta tattattatt cctgtgtgat acattgagca aagacgcgtt
    11581 catcttcgtc aaagatatta ttaaatgctg gttttgaaaa aagttcatcg gataagatat
    11641 agtcacgaaa taagtatctg ctaatatttt atgatttctt tttcagaacg tcgaacggga
    11701 ttttcttatt taagatatca gaatcttatg attcgggtaa aattctaaat aaatcaacat
    11761 gtcattaaaa tcatcatagc cattagctat ttcggctaaa atagagacta catgtcttcg
    11821 gtccatctca cttaaggagt gtagttccgt tgtaagtttt tccatagctt gcactgctaa
    11881 atttcgaaca aggaattttc tgctggtaat ctctaaaaag atggca
//
LOCUS       DAJVSY010000129        11883 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.129, whole genome shotgun sequence.
ACCESSION   DAJVSY010000129 DAJVSY010000000
VERSION     DAJVSY010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11883
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.129"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(39..353)
                     /locus_tag="OQQ19_003141"
                     /pseudo
     CDS             complement(39..353)
                     /locus_tag="OQQ19_003141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418152.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIB family hydrolase"
     gene            complement(468..866)
                     /locus_tag="OQQ19_003142"
     CDS             complement(468..866)
                     /locus_tag="OQQ19_003142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709502.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF937 domain-containing protein"
                     /protein_id="HCS1804675.1"
                     /translation="MGLFDEVVGAFLKGDAGKYQAILSWVEEQGGIQVLLEKLQSGGL
                     GAILSTWLSNQQSNQSVSGEQLESAPGTNAVSDLGQKLGVDTSTASSLLAEQLPKIID
                     ALSPQGEVSSQANNDLLSAGMELLKGKLFR"
     gene            complement(1106..3520)
                     /gene="gyrB"
                     /locus_tag="OQQ19_003143"
     CDS             complement(1106..3520)
                     /gene="gyrB"
                     /locus_tag="OQQ19_003143"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HCS1804676.1"
                     /translation="MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVV
                     DNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG
                     KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET
                     EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY
                     EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQR
                     DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS
                     QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT
                     RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI
                     LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT
                     LLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATL
                     HTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQ
                     TVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI
                     TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYK
                     GLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADLLFTTLMGDAVEPRRAFIEENALK
                     AANIDI"
     gene            complement(3549..4622)
                     /gene="recF"
                     /locus_tag="OQQ19_003144"
     CDS             complement(3549..4622)
                     /gene="recF"
                     /locus_tag="OQQ19_003144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HCS1804677.1"
                     /translation="MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIY
                     TLGHGRAFRSLQIGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDG
                     HKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQ
                     RNAALRQVTRYEQLRPWDKELIPLVEQISTWRAEYSAGIAADMADTCKQFLPEFSLTF
                     SFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKL
                     LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA
                     EHVIDMSDENSKMFTVEKGKITD"
     gene            complement(4622..5722)
                     /gene="dnaN"
                     /locus_tag="OQQ19_003145"
     CDS             complement(4622..5722)
                     /gene="dnaN"
                     /locus_tag="OQQ19_003145"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006177590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HCS1804678.1"
                     /translation="MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSL
                     TGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSG
                     RSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLF
                     ETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQI
                     GSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE
                     KFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCE
                     NVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL"
     gene            complement(5727..7130)
                     /gene="dnaA"
                     /locus_tag="OQQ19_003146"
     CDS             complement(5727..7130)
                     /gene="dnaA"
                     /locus_tag="OQQ19_003146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HCS1804679.1"
                     /translation="MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPN
                     RFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVA
                     QTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADN
                     PGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNA
                     IEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIN
                     GVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVR
                     ELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVA
                     DLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE
                     SHDIKEDFSNLIRTLSS"
     gene            7427..7507
                     /locus_tag="OQQ19_003147"
     CDS             7427..7507
                     /locus_tag="OQQ19_003147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804680.1"
                     /translation="MTIDKNWLNRSNKDPGRSLRFTHQPV"
     gene            7737..7877
                     /gene="rpmH"
                     /locus_tag="OQQ19_003148"
     CDS             7737..7877
                     /gene="rpmH"
                     /locus_tag="OQQ19_003148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001686914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HCS1804681.1"
                     /translation="MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV
                     SK"
     gene            7894..8253
                     /gene="rnpA"
                     /locus_tag="OQQ19_003149"
     CDS             7894..8253
                     /gene="rnpA"
                     /locus_tag="OQQ19_003149"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014172301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HCS1804682.1"
                     /translation="MVKLAFPRELRLLTPSQFTFVFQQPQRAGTPQITILGRLNSLGH
                     PRIGLTVAKKNVRRAHERNRIKRLTRESFRLRQHELPAMDFVVVAKKGVADLDNRALS
                     EALEKLWRRHCRLARGS"
     gene            8217..8474
                     /gene="yidD"
                     /locus_tag="OQQ19_003150"
     CDS             8217..8474
                     /gene="yidD"
                     /locus_tag="OQQ19_003150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HCS1804683.1"
                     /translation="MAPPLSPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEA
                     LRRFGVIKGSWLTVKRVLKCHPLHPGGDDPVPPGPFDTREH"
     gene            8477..10123
                     /gene="yidC"
                     /locus_tag="OQQ19_003151"
     CDS             8477..10123
                     /gene="yidC"
                     /locus_tag="OQQ19_003151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HCS1804684.1"
                     /translation="MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAA
                     GSAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLET
                     SPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNT
                     FTKTFVLKRGDYAVNVNYNVQNAGEKPLEISTFGQLKQSITLPPHLDTGSSNFALHTF
                     RGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYT
                     ANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLW
                     FISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKTQYTSMAKMRMLQPKIQA
                     MRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAP
                     FALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLW
                     FPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS"
     gene            10229..11593
                     /gene="mnmE"
                     /locus_tag="OQQ19_003152"
     CDS             10229..11593
                     /gene="mnmE"
                     /locus_tag="OQQ19_003152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HCS1804685.1"
                     /translation="MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPKPR
                     YADYLPFKDADGSVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPG
                     LRIARPGEFSERAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLV
                     EALTHLRIYVEAAIDFPDEEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMK
                     VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE
                     ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR
                     NKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGGFLARRRH
                     LQALEQAAEHLQQGKAQLLGAWAGELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSF
                     CIGK"
     gene            11836..>11883
                     /gene="tnaC"
                     /locus_tag="OQQ19_003153"
     CDS             11836..>11883
                     /gene="tnaC"
                     /locus_tag="OQQ19_003153"
                     /inference="COORDINATES: protein motif:HMM:NF019665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophanase leader peptide"
                     /protein_id="HCS1804686.1"
                     /translation="MNILHICVTSKWFNID"
BASE COUNT         2717 a         3254 c         3070 g         2842 t
ORIGIN      
        1 ggacaggggt atcgcttagt ttttcaattt cctatacgtg aaccgacttc gcgagagagt
       61 ttttccagga aacgatagtc gtcataactg agagcagttt gcgccacggt gctaccatca
      121 gcggccttct gtaccagcgc gccgttataa gtaatgcagt agtcgcccgg ctgttccata
      181 tgcagctctt tcaggtagtt gtgaacgcct gcataagggc gacccgtcgt tagcacgaca
      241 ttcacgccac gggcgcgagc tgcggcaatc gcatttttaa cggcgggtga aatggtgtga
      301 tcgggcagca gaagggtgcc atccatatcg atagcaatga gtttgatagc catgagttcc
      361 ccaggtagat tagttcctga cccatgctaa cgcgattccg ctcaaaaatc agtacaacac
      421 ccgagggaaa agggggatgc aacgcgggtt gcatgctccc catttgctta gcggaagagt
      481 ttccctttca gcagttccat acctgcggaa agcagatcgt tattggcttg tgaagacact
      541 tcaccttgcg gtgagagcgc atcaataatc ttcggcaatt gttctgccag taaactggaa
      601 gccgtactgg tatccacgcc aagtttttgc ccgagatcgg acaccgcatt tgtgccgggc
      661 gccgattcca gttgctcgcc gctaactgat tgattgctct gctgattact caaccaggtt
      721 gagagaatgg cccctaagcc gccactttgc agtttttcca gcagcacctg aatgccgccc
      781 tgctcctcaa cccaacttaa aatagcctga tatttccccg catcgccttt cagaaaggca
      841 ccgacaactt catcaaaaag ccccatgata atcacctgta aagcgttacg tgttgaccca
      901 aaaagtatag atctgcggga tgataattgc ggattgcaga aataaaaagg gcggagatga
      961 tctccgccct ttttttatag cttcttgccg gatgcggcgt taacgtctta cctggcctac
     1021 aaaatcatta aaattcaata cattgcaaga ttttcgtagg cctgataagc gtagcgcatc
     1081 aggcacgctc gcatggttaa cgccattaaa tatcaatatt cgccgctttc agggcgttct
     1141 cttcaataaa cgcacgacgc ggttctacgg cgtcgcccat cagcgtggtg aacaacaggt
     1201 cagcggcaat cgcatcctta acggtaacgc gcagcatacg acgactttcc gggtccatgg
     1261 tggtttccca cagctgttcc gggttcatct cgcccagacc tttataacgc tggatggaga
     1321 gaccgcgacg agactctttc accagccagt ccagcgcctg ctcgaagctg gctaccggct
     1381 gacgacgctc gccacgttcg ataaatgcat cttcttccag caagccacgc agtttctcac
     1441 ccagcgtgca gatacgacga tattcgccac cagtgataaa ttcgtgatcc agcggatagt
     1501 cagtatccac accgtgggta cgcacgcgaa caatcggctc gaacaggttt tgttcggcat
     1561 tggtgtggac atcaaacttc cactggctgc cgtgctgttc tttgtcgttc agttcgctga
     1621 ccagcgcgtt cacccagcgg gtaacggtct gctcatcaga gaggtcggct tccgtcagcg
     1681 tcggctgata gataagctct ttcagcattg ctttcggata acgacgctcc atgcggttga
     1741 tcattttctg cgtcgcgttg tactcagaca ccagtttctc taacgcttcg ccagccaatg
     1801 ccggtgcgct ggcgttggtg tgcagcgttg cgccgtccag cgcgatagag atctggtact
     1861 gatccatcgc ttcgtcgtct ttaatgtact gttcctgctt gcctttcttc actttgtaca
     1921 gcggcggctg agcgatgtag acgtgaccgc gttcaacgat ttccggcatc tgacgataga
     1981 agaaggtcaa cagcagcgta cgaatgtgcg agccgtcgac gtccgcatcg gtcatgatga
     2041 tgatgctgtg ataacgcagt ttgtccgggt tgtactcgtc acgaccgata ccacagccaa
     2101 gcgcggtgat aagcgtcgcc acttcctgag aagagagcat cttatcgaag cgcgctttct
     2161 caacgttgag gattttaccc ttcagcggca gaatcgcctg gttcttgcgg ttacgcccct
     2221 gcttcgcaga gccgcccgcg gagtcccctt ccaccaggta cagttcggaa agcgccggat
     2281 cgcgttcctg gcagtctgcc agtttgcccg gcaggcccgc taagtcgagc gcacctttac
     2341 ggcgggtcat ttcacgcgcg cgacgcgccg cttcacgggc acgggcagca tcgataattt
     2401 tgccaaccac gattttcgcg tcggttgggt tttccagcag gtattctgcc agcagttcgt
     2461 tcatctgctg ttcaaccgcc gatttcacct cagaagaaac cagtttgtct ttggtctggg
     2521 aggagaattt cgggtccggc acttttacgg aaacgaccgc aatcaggcct tcacgcgcat
     2581 cgtcaccggt ggcgctgact ttggcttttt tgctgtagcc ttctttgtcc atgtaggcgt
     2641 tcagggtacg ggtcatcgcc gcacggaagc ctgccaggtg agtaccgccg tcacgctgcg
     2701 gaatgttgtt ggtaaagcag tagatgtttt cctggaagcc atcgttccac tgcaacgcca
     2761 cttcgacgcc aataccgtct ttttcggtgg agaagtagaa gatattcgga tggatcggcg
     2821 ttttgttctt gttcagatat tcaacgaacg ccttgatgcc gccttcatag tggaagtggt
     2881 cttctttgcc gtcacgcttg tcgcgcagac gaatggaaac gccggagttg aggaacgaca
     2941 actcacgcag acgtttcgcc agaatttcat attcgaactc ggtcacattg gtgaaggttt
     3001 cgaggctggg ccagaaacgc accatggtgc cggttttttc agtctcgccg gtaaccgcca
     3061 gcggagcctg cggtacaccg tgttcgtaga tctgacggtg aattttaccc tcgcgctgga
     3121 taaccagctc cagtttttgc gacagggcgt ttactaccga aacaccaacg ccgtgcagac
     3181 cgccggacac tttataggag ttatcgtcaa atttaccgcc tgcgtgcaga acggtcatga
     3241 tcacttccgc cgccgatacg ccctcttccg ggtgaatacc ggtcggaatg ccgcgcccgt
     3301 catcctgtac agagacagag ttatcggcgt gaatggtgac gataatttct ttacagtgac
     3361 ccgcgagcgc ttcgtcgata gcgttatcta ccacctcgaa taccatgtgg tgcagaccgg
     3421 tgccgtcatc cgtgtcgccg atatacatac ccgggcgctt acgcaccgca tccagccctt
     3481 tcaggacttt gatactggag gagtcataag aattcgacat caacgtttct cgctcattta
     3541 tacttgggtt aatccgttat tttacccttt tccacggtaa acatcttcga attttcgtcc
     3601 gacatgtcta taacgtgttc agcactgatc gcgctgacaa agacctgtga ttgcgtcgct
     3661 tttaagcggc tggcaagcag cccgcgacgc tcatcatcaa gctcagaggc aaaatcatct
     3721 atcaggtaga gacaccgccg cccgctttca cgggtgagga actctccttg cgccagacgt
     3781 aaggcgcaca tcaacagctt aagctgccca cgcgataagg tatcttccac cggcgcaccg
     3841 tcggcgcgaa tgcgtaagtc cgctttatgc gggccatgcg cggtgtaggt tagctggcga
     3901 tcgcgttcaa aattacgttc cagcacctca gcatattctg tctctttctc ccagccgcgc
     3961 tggaaagaga aagtcagaga aaactcaggg agaaattgct tacaagtatc ggccatatca
     4021 gccgcgatac cggcgctata ctccgcgcgc caggtgctga tttgctccac cagcgggatc
     4081 agctctttat cccacgggcg tagctgttcg taacgtgtca cctggcgcag cgccgcattg
     4141 cgctgcttga gcaatcgctt gagattgctc caggcggtga aaaatccggg ttcgttgtga
     4201 aagcatgccc agtcgagaaa tgctcttctg tatttggggc cgccgttgag taaagtaaac
     4261 ccttctggcg ttatcagctg catcggcatc aggtgcgcca gctccgcgac tttatgcccg
     4321 tcagtaccgt cgatgcggac tttgctgtcg ccttgtttgt ctttggttaa gccaatcgcc
     4381 gtctcgcgct cttcgccctg taatcgccca tggagaacaa atgcctcctg ctcatggcga
     4441 atgacgcgac caatctgcaa actgcgaaac gcccgaccat ggccgagcgt atagatggct
     4501 tccagcacac tggttttgcc actgccgttg gcacctacca gaaagttaaa gccgggagat
     4561 aaggcgagat ccgcggtttc gatattgcgg aaatcgcgga tcaacaagcg ggtgagggac
     4621 attacagtct cattggcatg acaacataag ccgcgctctg gctggccgca tcttcaatct
     4681 gcacgctgga aaccgaatcg gtcagcatca tgcggacgtt ttcgcatttc agcgcgttca
     4741 gaacatccag cacatagctg acgttgaagc cgatttccat ctccgcaccg ctataggtaa
     4801 cgtcgaggat ctcttccgct tcttcctgtt ccgggttgtt ggcagtgatt ttcagctggt
     4861 tttcgctgac ataaagacgt acgccgcgga atttctcgtt agagagaatt gccgcacggg
     4921 caaacgcctg cttgagcaga tcgcagccag cttccagatg tttgtccggg ttcttcggta
     4981 gaacgcggcg gtaatccggg aagcgaccat ccaccagttt ggaggtgaag ataaagtcgc
     5041 caacgtgggc acgaatgtta ttgctgccaa tctgcacgcg cagcggattg tcgccgccgt
     5101 cgagcatacg catcagttca atcacgcctt tacgcggcac gatcaccgaa tggcttggca
     5161 aagattgacc aattggcatt gaacagactg ccagacggtg accatcggtc gctacggtgc
     5221 gcagttcttc gccttcggtt tcaaacagca taccgtttaa gtaatagcga acatcctgat
     5281 gcgccatcga aaactgggtc gcttcaatca gacgcttcat cgtcgcctgc ggcagggtaa
     5341 attcgacttc gctctgccag tcatcgaggt tcgggaaatc cgccgctggc agggtagaca
     5401 gcgaaaaacg gctacgcccg gagcgcacca gcatccgttc accttccagc tgcacggcaa
     5461 tttccgcgcc ttcaggcaga ccacggcaga tatcaaagaa tttgcgcgcc ggaacggtcg
     5521 ttgctcctgg ctcgtgtggc tgaaccagcg caacacgtgc caccatttcc atctcgagat
     5581 cagtaccggt cagcgacaac gtaccgtcag caacctgtaa cagcagatta ccgagaatcg
     5641 gtagcgtagg acgaccacct aacggaccgc tcacctgttg tagcggtttt aataaatgct
     5701 cacgttctac ggtaaatttc ataggtttac gatgacaatg ttctgattaa atttgaaaaa
     5761 tcttctttga tatcgtggct ctcttcacgc aactgctcga tcttacggca ggcatgaagc
     5821 accgtcgtgt ggtcacgacc accaaacgca tcgccaatct ccggcagact gtggttagtc
     5881 agctctttcg ccagcgccat cgccatctgg cgcggacgcg ccaccgagcg ggatcgacgc
     5941 ttggaaagga gatccgcgac tttgatcttg tagtactccg ccaccgtctt ctgaatattg
     6001 tcgatggtga ccagtttttc ctgcaatgcc agcaagtcgc gcagcgcctc acgcacgaag
     6061 tcgatggtga tcgcccgtcc ggtaaagttg gcattggcaa tgacgcggtt cagcgcccct
     6121 tccagctcac gtacgttaga tcgtagacgc ttggcgataa agaacgccac ttcgcccggc
     6181 aaacgaatgt cgttttcgtc ggcctttttc atcaggatcg ccacacgggt ttccagctct
     6241 ggcggttcga tcgccacagt cagtccccaa ccgaagcggg atttcaaacg atcctcaacg
     6301 ccgttgatct ctttcggata gcgatccgag gtgagaatga tctgttgatt accttccagc
     6361 agggcgttga aggtatggaa aaactcttcc tgagatcgtt ctttattagc aaaaaactga
     6421 atatcgtcga tcagcagtgc atctacggaa cggtagtagc gtttaaactc ttcgatcgcg
     6481 ttgttttgca gggctttaac catgtcctga acaaagcgct cggagtgcat ataaaccact
     6541 ttggcattcg gcttgcgcgc cataatgccg ttacccaccg catgcagcag gtgagtttta
     6601 cccagacccg tgccgccata aaggaacaac gggttatagg caccgccagg gttatccgcc
     6661 acctggcgag ccgccgcgcg cgccagttgg ttagatttac cttcaacgaa gttatcaaac
     6721 gtgtgtttga cgtttacgtt agaacgatag gtcggttctg ccggggccgg gacgttatcc
     6781 caacctgagc gcgtagaagg cgcagcacgt tgcggctgcg tttgcgccac ctgtgcaggg
     6841 gccgcgacgt tgctcgtcac tgccgcttgt ggcgtttgcg tcaccggttt ggtgccgact
     6901 tcaaaacgca gctgtggggc atccgctccg cagaaactgg ttagcagtcc attgatatta
     6961 ttaaggtact tgtcccgtac ccaatcgagg acaaaacggt ttggcgcgta cagggccagc
     7021 gtgttatcgc tcagttccgc ctgcaatggg cgtatccaca tactgaattc tgtggctggt
     7081 aactcatcct gcaatcgggc aagacactgc tgccaaagcg aaagtgacac ggcggactcc
     7141 actcgaacaa aagtcgataa tgactaaggc tgaaacattc atgattgttg acgtacgtcg
     7201 aaaagaccct gcttgagggt gacgcacgaa ccgctgtctg cggttatatg cccgatcaag
     7261 atcctgcaaa acgatcggga ccgcggatca tagcctaaac tgcgcaagag atcttctgtt
     7321 tctcacagat tttcccgatt tatccacagg actttccaga actcgctaag tgtaaacgat
     7381 cctgccgcga ggcgggcacg atttacgccg catattgaaa aatttaatga ccatagacaa
     7441 aaattggctt aatcgatcta ataaagatcc aggacgatcc ttgcgcttta cccatcagcc
     7501 cgtataatcc tccacccggc gcgccatgct ggtttccact ggtgtgaggt cgtacatttt
     7561 ccctgcgaaa aggtgcggaa aagcgcggta aataaggaaa gagaattgac tccggagtgt
     7621 acaattatta caatccggcc tctttaatca cccatggctt cggtgtccat cgtttcattt
     7681 ttcggcggat atccaataaa gccattgaat ttattcaagt ttaggtagaa atcgccatga
     7741 aacgcacttt tcaaccgtct gtactgaagc gcaaccgttc tcacggcttc cgtgctcgta
     7801 tggctactaa aaatggtcgt caggttctgg cacgtcgtcg tgctaaaggc cgcgctcgtc
     7861 tgaccgtttc taagtaataa agctaacccc tgagtggtta agctcgcatt tcccagggag
     7921 ttacgcttgt taactcccag tcaattcaca ttcgtcttcc agcagccaca acgggctggc
     7981 acgccgcaaa ttaccattct cggccgcctg aattcgctgg ggcatccccg tatcggtctt
     8041 acagtcgcca agaaaaacgt tcgacgcgcc catgaacgca atcggattaa acgtctgacg
     8101 cgtgaaagct tccgtctgcg ccaacatgaa ctcccggcta tggatttcgt ggtggtggcg
     8161 aaaaaagggg ttgccgacct cgataaccgt gctctctcgg aagcgttgga aaaattatgg
     8221 cgccgccact gtcgcctggc tcgcgggtcc tgatagccct cattcgggtc tatcaacgcc
     8281 tgattagtcc gctactcggg ccgcattgtc gtttcactcc aacctgttca agctacggaa
     8341 ttgaggcatt gcgcaggttt ggagtgataa aaggcagttg gttgacggtg aaacgcgtat
     8401 taaaatgcca ccctttacac cctggtggtg acgatcccgt cccgcccgga ccatttgata
     8461 ccagagaaca ctaacgatgg attcgcaacg caatctttta gtcatcgctt tgctgttcgt
     8521 gtctttcatg atctggcaag cctgggagca ggataaaaac ccgcaacctc aggcccaaca
     8581 gaccacgcag acaacgacca ccgcagcggg tagcgccgcc gaccagggcg taccggccag
     8641 tggccagggg aaactgatct cggttaagac cgacgtgctt gatctgacca tcaacacccg
     8701 tggtggtgat gttgagcaag ctctgctgcc tgcttacccg aaagagctga actctaccca
     8761 gccgttccag ctgctggaaa cttcaccgca gtttatttat caggcacaga gcggtctgac
     8821 cggtcgtgat ggcccggata acccggctaa cggcccgcgt ccgctgtata acgttgaaaa
     8881 agacgcttat gtgctggctg aaggtcaaaa cgaactgcag gtgccgatga cgtataccga
     8941 cgcggcaggc aacacgttta ccaaaacgtt tgtcctgaaa cgtggtgatt acgctgtcaa
     9001 cgtcaactac aacgtgcaga acgctggcga gaaaccgctg gaaatctcca cctttggtca
     9061 gttgaagcaa tccatcactc tgccaccgca tctcgatacc ggaagcagca acttcgcact
     9121 gcacaccttc cgcggcgcgg cgtactccac gcctgacgag aagtacgaga aatacaagtt
     9181 cgataccatt gccgataacg aaaacctgaa catctcttcg aaaggtggtt gggtggcaat
     9241 gctgcaacag tatttcgcga cggcgtggat cccgcataac gacggtacca acaacttcta
     9301 taccgctaat ctgggtaacg gcatcgccgc tatcggctat aaatctcagc cggtactggt
     9361 tcagcctggt cagactggcg cgatgaacag caccctgtgg gttggcccgg aaatccagga
     9421 caaaatggca gctgttgctc cgcacctgga tctgaccgtt gattacggtt ggttgtggtt
     9481 catctctcag ccgctgttca aactgctgaa atggatccat agctttgtgg gtaactgggg
     9541 cttctccatt atcatcatca cctttatcgt tcgtggcatc atgtacccgc tgaccaaaac
     9601 gcagtacacc tccatggcga agatgcgtat gctgcagccg aagattcagg caatgcgtga
     9661 gcgtctgggc gatgacaaac agcgtatcag ccaggaaatg atggcgctgt acaaagctga
     9721 gaaggttaac ccgctgggcg gctgcttccc gctgctgatc cagatgccaa tcttcctggc
     9781 gttgtactac atgctgatgg gttccgttga actgcgtcag gcaccgtttg cactgtggat
     9841 ccacgacctg tcggcacagg acccgtacta catcctgccg atcctgatgg gcgtaacgat
     9901 gttcttcatt cagaagatgt cgccgaccac agtgaccgac ccgatgcagc agaagatcat
     9961 gacctttatg ccggtcatct tcaccgtgtt cttcctgtgg ttcccgtcag gtctggtgct
    10021 gtactatatc gtcagcaacc tggtaaccat tattcagcag cagctgattt accgtggtct
    10081 ggaaaaacgt ggcctgcata gccgcgagaa gaaaaaatcc tgattcggtg agttttcgct
    10141 aaaataaggg cggtcagttg accgcctttt ttcttttcgt agggcggata agcaccgcgc
    10201 atccgccaca caaagcaaca ggaacatcat gagcgataat gacactatcg tagcccaggc
    10261 cacgcctccg ggacgtggcg gcgttggcat cctgcgcatc tccggcttca aagcccgtga
    10321 agttgccgaa accgtgctgg gtaaactgcc taagccgcgc tacgccgatt atcttccgtt
    10381 taaagacgcc gacggcagcg tgctcgatca ggggattgcg ctatggttcc ctggcccgaa
    10441 ctcgttcacc ggcgaagatg tgctggaact gcaaggtcat ggcggtccgg tgatcctcga
    10501 cctgctgtta aaacgcattc tgaccattcc cggcctgcgg attgctcgcc ctggtgagtt
    10561 ttccgaacgc gcgtttctta acgataaact tgacttagcc caggccgagg cgattgccga
    10621 tcttatcgac gccagttcgg aacaggcggc ccgttcggca cttaactcgc tgcaaggcgc
    10681 attctccgca cgggttaatc atctggtaga agccctcacc cacttgcgca tttacgtcga
    10741 agcggcaatt gatttccccg atgaagagat cgatttcctc tccgacggaa aaattgaagc
    10801 ccagctcaat gacgttattg ccgatcttga tgcagtgcgt gctgaagcac gtcagggtag
    10861 tttgttgcgc gaagggatga aagtggtgat tgccggacgt cctaacgccg gtaaatcgag
    10921 cctgttaaac gcgctggcgg ggcgtgaagc ggcaatcgta accgatatcg ccggaactac
    10981 gcgtgacgtg ctgcgtgagc atatccacat tgacggaatg ccgctgcata tcatcgatac
    11041 cgccgggcta cgtgaagcca gtgacgaagt agaacgtatt ggtatcgagc gcgcgtggca
    11101 ggaaattgaa caggccgacc gcgtgctgtt tatggtcgat ggcaccacaa cagacgccgt
    11161 ggatccggca gagatctggc cggaatttat tgcccgtctg ccagcgaaac tgccgatcac
    11221 cgtggtgcgc aataaagccg atatcaccgg cgaaacgctg ggaatgagtg aagtgaacgg
    11281 tcacgcgtta attcgtctct cggcaaggac tggtgaaggc gtggacgtgc tgcgtaacca
    11341 tctcaaacag agcatgggct ttgacaccaa catggaaggc ggcttcctgg cgcgtcgtcg
    11401 ccacctacag gcgctggaac aggcagcgga acatctacaa cagggcaaag cgcaactgtt
    11461 gggagcctgg gcaggtgaac tgctggcgga agagttgcgt ctggcacagc agaacttaag
    11521 cgaaatcacc ggggaattta cttcagacga cctgctgggg cggattttct ccagcttctg
    11581 tattggtaag taaccgcgct tacgaagccg tattctgact gtcagatgcg gcttcgcttc
    11641 attgttagca ctcctgttat tcctcaaccc tttttttaaa cattaaaatt cttacgtaat
    11701 ttataatctt aaaaaaagca tttaatattg ctccccgaac gattgtgatt cgattcacat
    11761 ttaaacaatt ttagaataga caaaattctt gagtattata ctgtagcctc gtgtctttcg
    11821 aggaataagt gcattatgaa tatcttacat atatgtgtga cctcaaaatg gttcaatatc
    11881 gac
//
LOCUS       DAJVSY010000130        11810 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.130, whole genome shotgun sequence.
ACCESSION   DAJVSY010000130 DAJVSY010000000
VERSION     DAJVSY010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11810
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.130"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            56..325
                     /locus_tag="OQQ19_003154"
     CDS             56..325
                     /locus_tag="OQQ19_003154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1804687.1"
                     /translation="MLLQHSDIEIAWYASIQQEPNGWKTVTTQFYIQEFSEHIAPLQD
                     AVDLEIATEEENSLLEAWKKYRVLLNCVDTSTAPDIEWPEEPDTM"
     gene            complement(441..689)
                     /locus_tag="OQQ19_003155"
     CDS             complement(441..689)
                     /locus_tag="OQQ19_003155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI-like family protein"
                     /protein_id="HCS1804688.1"
                     /translation="MRVEICIAKEKITKMPNGAVDALKEELTRRISKRYDDVEVIVKA
                     TSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH"
     gene            complement(917..982)
                     /locus_tag="OQQ19_003156"
                     /pseudo
     CDS             complement(917..982)
                     /locus_tag="OQQ19_003156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416631.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family DNA-binding transcriptional
                     regulator"
     gene            1204..2889
                     /gene="btsS"
                     /locus_tag="OQQ19_003157"
     CDS             1204..2889
                     /gene="btsS"
                     /locus_tag="OQQ19_003157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulatory system sensor histidine
                     kinase BtsS"
                     /protein_id="HCS1804689.1"
                     /translation="MYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKF
                     LCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSM
                     GGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMVQMLIILA
                     IARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAAS
                     TEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISST
                     YTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNR
                     LFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIK
                     AVIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQV
                     NIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNA
                     GLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLQLPWRDEA"
     gene            2886..3605
                     /gene="yehT"
                     /locus_tag="OQQ19_003158"
     CDS             2886..3605
                     /gene="yehT"
                     /locus_tag="OQQ19_003158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310963.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BtsR"
                     /protein_id="HCS1804690.1"
                     /translation="MIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVH
                     KLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKP
                     IDEARLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRM
                     SGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQYLVNLAHLQEIRLEDNGQAELILR
                     NGLTVPVSRRYLKSLKEAIGL"
     gene            3652..4122
                     /locus_tag="OQQ19_003159"
     CDS             3652..4122
                     /locus_tag="OQQ19_003159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1456 family protein"
                     /protein_id="HCS1804691.1"
                     /translation="MLSNDILRSVRYILKANNNDLVRILALGNVEATAEQIAVWLRKE
                     DEEGFQRCPDIVLSSFLNGLIYEKRGKDESAPALEPERRINNNIVLKKLRIAFSLKTD
                     DILAILTEQQFRVSMPEITAMMRAPDHKNFRECGDQFLRYFLRGLAARQHVKKS"
     gene            complement(4163..4624)
                     /locus_tag="OQQ19_003160"
     CDS             complement(4163..4624)
                     /locus_tag="OQQ19_003160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416627.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YehR family lipoprotein"
                     /protein_id="HCS1804692.1"
                     /translation="MKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAIT
                     YVYKGDKVLKQSSETKIQFASISATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYA
                     QENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVK"
     gene            complement(4749..6749)
                     /locus_tag="OQQ19_003161"
     CDS             complement(4749..6749)
                     /locus_tag="OQQ19_003161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SWIM zinc finger family protein"
                     /protein_id="HCS1804693.1"
                     /translation="MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHEN
                     GALIATFSDGVRTQLANGQALKEAQCSCGASGMCRHRVMLVLSYQRLCATAQPTGKEE
                     EWDPAIWLEELATLPDATRKRAQALVAKGITIELFCAPGEIPSARLPMSDVRFYSRSS
                     IRFARCDCIEGTLCEHVVLAVQAFVQAKAQQAELTHLIWQMRSEHVTSSDDPFASEEG
                     KTCRQYVQQLSQALWLSGISQPLIHYEAAFSRAQQAAERCSWRWVSESLRQLRASVDA
                     FHARASHYHAGECLRQLAALNSRLNCAQEMARRDSVGEVPPVPWRTVVGSGIAGEAKL
                     DHLRLVSLGMRCWQDIEHYGLRIWFTDPDTGSILHLSRSWPRSEQENSPAATRRLFSF
                     QAGALAGGQIVSQAAKRSADGELLLATRNRLSSVVPLSPDAWQMLSAPLRQPGIVALR
                     EYLRQRPPACIRPLNQVDNLFILPVAECISLGWDSGRQTLDAQVISGEGEDNLLTLSL
                     PASACSPFAVERMAALLQQTDDPVSLVSGFVSFVEGQLTLEPRVMMTKTRAWALDAET
                     APVAPLPSASVLPVPSTAHQLLMRCQALLIQLLHNGWRYQEQSAISQAELLANDLTAV
                     GFYRLAHVLVQFRNTESEARVEAMNNGVLLCEQLFPMLQQQG"
     gene            complement(6746..7882)
                     /locus_tag="OQQ19_003162"
     CDS             complement(6746..7882)
                     /locus_tag="OQQ19_003162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HCS1804694.1"
                     /translation="MSELNDLLTTRELQRWRLILGEAAETTLCGLDDNARQIDHALEW
                     LYGRDPERLQRGERSGGLGGSNLTTPEWFNSIHTLFPQQVIERLESDAVLRYGIEDVV
                     TNLDVLERMQPSESLLRAVLHTKHLMNPEVLAAARRIVRQVVEEIMARLAKEVRQAFS
                     GVRDRRRRSFIPLARNFDFKSTLRANLQHWHPQHGKLYIESPRFNSRIKRQSEQWQLV
                     LLVDQSGSMVDSVIPSAVMAACLWQLPGIRTHLVAFDTSVVDLTADVADPVELLMKVQ
                     LGGGTNIASAVEYGRQLIEQPAKSVIILVSDFYEGGSSSLLTHQVKKCVQSGIKVLGL
                     AALDSTATPCYDRDTAQALVNVGAQIAAMTPGELASWLAENLQS"
     gene            complement(7875..10154)
                     /locus_tag="OQQ19_003163"
     CDS             complement(7875..10154)
                     /locus_tag="OQQ19_003163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804695.1"
                     /translation="MSEPLIVGIRHHSPACARLVKSLIESQRPRYVLIEGPADFNDRV
                     DELFLAHQLPVAIYSYCQYQDGAAPGRGAWTPFAEFSPEWQALQAARRIQAQTYFIDL
                     PCWAQSEEVDDSPDTQEESQALLLRATRMDNSDTLWDHLFEDESQQIALPSALAHYFA
                     QLRGDFPGDALNRQREAFMARWIAWAVQRNNGDVLVVCGGWHAPALAKMWRECPQEIN
                     KPELPSLANAVTGCYLTPYSEKHLDVLAGYLSGMPAPVWQNWCWQWGLQQAGEQLLKT
                     VLTRLRQHNLPASIADMAAAHLHAMALAQLRGHTLPLRTDWLDAIAGSLIKEALNAPL
                     PWSYRGVIHPDTDPILLTLIDTLAGDGFGKLAPSTPQPPLPKDVTCELERTAISLPAE
                     LTLNRFTPDGLAQSQVLHRLAILEIPGIVRQQGSTLTLAGNGEEHWKLTRPLSQHAAL
                     IEAACFGATLQEAARHKLEADMLDAGGIGSITTCLSQAALAGLASFSQQLLEQLTLLI
                     AQENQFAEMGQALEVLYALWRLDEISGMQGAQILQTTLCAAIDRTLWLCESNGRPDEK
                     EFHAHLHSWQALCHILRDLHSGVNLSGVSLSAAVALLERRSQAIHAPALDRGAALGAL
                     MRLEHPNASAEAALTMLAQLSPAQSGEALHGLLALARHQLACQPAFIAGFSSHLNQLS
                     DANFINALPDLRAVMAWLPPRERGTLAHQVLEHYQLAQLPVSALQMPLHCPPQAIAHH
                     QQLEQQALASLQHWGVFHV"
     gene            complement(10165..11253)
                     /locus_tag="OQQ19_003164"
     CDS             complement(10165..11253)
                     /locus_tag="OQQ19_003164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310954.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HCS1804696.1"
                     /translation="MSPQNNHLQRPPAAVLYADELAKLKQNDNAPCPPGWQLSLPAAR
                     AFILGDSAQNISRKVVISPSAVERMLVTLATGRGLMLVGEPGTAKSLLSELLATAISG
                     DAGLTIQGGASTTEDQIKYGWNYALLINHGPSTEALVPAPLYQGMRDGKIVRFEEITR
                     TPLEVQDCLLGMLSDRVMTVPELTGEASQLYAREGFNIIATANTRDRGVNEMSAALKR
                     RFDFETVFPIMDFAQELELVASASARLLAHSGIPHKVPDAVLELLVRTFRDLRANGEK
                     KTSMDTLTAIMSTAEAVNVAHAVGVRAWFLANRAGEPADLVDCIAGTIVKDNEEDRAR
                     LRRYFEQRVATHKEAHWQAYYQARHRLP"
BASE COUNT         2841 a         2978 c         3100 g         2891 t
ORIGIN      
        1 ttatagtttt atttgtgaat taaatcaatt atggcgatga attacaaggg gttaaatgct
       61 gctgcagcat agcgatattg aaatagcctg gtatgcttcg atacagcagg agccgaatgg
      121 ctggaagacc gtcaccacac agttctacat ccaggaattc agtgagcata ttgcgccact
      181 tcaggatgct gtagatctgg agatcgcaac ggaggaagaa aactcgttgc tggaagcctg
      241 gaagaagtat cgggtgttgc tgaactgtgt tgatacatca actgcacctg atattgagtg
      301 gccggaagaa ccagacacaa tgtaagcgaa aaagaaaaac cgcagacacg acgtatgcag
      361 gacgtgctgc ggttggctgg taaactttcg atagtgcgag tattgaatga tttccagccg
      421 ttaccgattt tacgtgttta ttagtgaaca aaccactcgt cagcagactc ccaggtatct
      481 ttcagagtct cctgaacaaa tgtttttgca gaatccttat ctgcggtgcg tgtaacagaa
      541 aggccatcgt tgctggtggc ttttacgatc acctctacat cgtcataacg tttactgatg
      601 cgtcgggtta attcttcctt taacgcatcc acagcaccgt ttggcatttt agtgattttt
      661 tctttagcga tacagatctc aacacgcata acaccctctt gtaactgtag ttatgtacag
      721 gtgttatttt tatctgtatg gataaccagt atcaatttct gatattgttt atggggcatc
      781 aatggggcat gtatgggaca ctttttatcg gcgaaattcg tcgaagttcg tcgacatggt
      841 aaacgaatca tctatccaac ccttgaaaaa cggcgctcct ggacgatctt cgtcgatttt
      901 ttaaaatgtt gcgtcacgcg cgtaacgtga cagggttaat atcacaaagc aacgccactt
      961 caccaattgt gtaaagcgcc atcgtctcac ccttgctcgc gaggtcccgg tttaacttta
     1021 gacgcagttt tgcgaaccag gtagttttgc ccgttttttg tgcatctata gggtgatttt
     1081 atttttgcca ggcgattttg agtgatcgta ctcacgaatt ctcatttttc tgcaagagtt
     1141 caaagaaagt taaacgcagg caatgtatgt tacgcgtttt aaagggaagt gtggtttgcg
     1201 ggtatgtacg attttaatct ggtgttgctg ctgcttcagc agatgtgcgt ttttttagtc
     1261 attgcgtggt taatgagtaa aacgccatta ttcataccgt taatgcaggt cacggttcgt
     1321 ctgccgcata aatttctctg ctacatcgtc ttttccatct tctgcatcat gggcacctgg
     1381 tttgggttgc acattgacga ttctattgcc aatacccgtg cgataggcgc ggtaatgggc
     1441 ggcttactcg gcggtccggt cgtcggtggg ctggttggcc tgaccggcgg gttacatcga
     1501 tattcgatgg ggggcatgac cgcgctaagt tgcatgatct cgaccatcgt tgaaggattg
     1561 ctcggcggcc tggtacacag catcctgatt cgtcgcgggc gtactgataa agtctttaac
     1621 cccattaccg ccggtgccgt cacgttcgtc gctgaaatgg tgcaaatgtt gatcatcctg
     1681 gcgatcgccc gaccttatga agatgcggtg cgtctggtga gtaatattgc tgcaccaatg
     1741 atggtcacca ataccgtcgg cgcggcgctg tttatgcgta tattgctcga taaacgcgcg
     1801 atgtttgaaa aatacacttc ggctttttct gccactgcgc tgaaagtggc tgcctcgacg
     1861 gaaggcattt tgcgccaggg gtttaacgaa gtgaacagca tgaaagtggc acaggtgctg
     1921 tatcaggagc tggatattgg tgcagtcgcg attaccgatc gagagaaatt gctggccttt
     1981 actggaattg gtgacgacca ccatttaccc ggcaaaccga tttcttcgac ttacacctta
     2041 aaagcgattg aaaccggtga agtggtctac gctgatggca acgaagtacc ttatcgttgc
     2101 tctttgcatc cgcaatgcaa actggggtcg acgctggtaa ttccgttgcg tggtgaaaat
     2161 cagcgggtga tgggcaccat caaattgtat gaagccaaaa accgtttatt cagttcaata
     2221 aaccgcacgc tgggcgaggg gattgcgcaa ctgctttcgg cgcagattct tgccgggcaa
     2281 tatgagcggc aaaaagcgat gctcacccag tcagaaatca aactgcttca cgcccaggtg
     2341 aatcctcatt ttttgtttaa tgcgcttaac accattaaag cggtgatccg ccgcgacagc
     2401 gaacaggcca gccagctggt gcagtatctt tccacttttt tccgcaaaaa cttaaagcgg
     2461 ccttcggagt ttgttactct cgccgacgaa attgaacatg tgaacgctta tctgcaaatt
     2521 gaaaaggcgc gcttccagtc gcggttgcag gtcaacattg ctattccgca agaattatcc
     2581 cagcagcaat tgcccgcgtt taccctgcaa ccgatagtgg aaaacgccat taaacatggg
     2641 acatcacaac tgctggatac agggcgagtg gcaatcagcg cccgacgtga ggggcaacat
     2701 ttgatgctgg agatcgaaga caatgccggt ttgtatcaac cggtaaccaa tgccagtggg
     2761 ctggggatga atctggtgga taagcgttta cgtgaacggt ttggcgatga ctatggaata
     2821 agcgtcgcct gtgagcctga tagttacacc cgaataacgt tacaactacc atggagggac
     2881 gaggcatgat taaagtctta attgtcgatg atgaaccgtt agcacgggag aacctgcgtg
     2941 tatttttgca ggagcagagc gatattgaaa tcgttggaga gtgttcaaac gccgtggaag
     3001 ggatcggcgc ggtgcataaa ctgcgcccgg atgtgctgtt tctcgatatc cagatgccgc
     3061 gcatcagtgg tctggaaatg gtggggatgc ttgacccgga acatcgcccg tatattgttt
     3121 ttctcactgc gtttgacgaa tacgctatta aagcctttga agaacatgcc tttgattatc
     3181 tgctgaagcc aattgatgaa gcgcgactgg agaaaacgct ggcgcgattg cgtcaggagc
     3241 gcagcaagca ggatgtttcg ctgttaccgg aaaatcaaca ggcgctgaaa tttatccctt
     3301 gtacggggca tagtcggatt tatttgctgc aaatgaaaga tgtggcattt gtcagcagtc
     3361 ggatgagcgg tgtctacgtt accagccacg aagggaaaga gggctttacc gaattgacat
     3421 tacgtaccct ggaaagtcgt acaccactac tgcgctgcca tcgtcagtat ctggttaacc
     3481 tcgcgcattt acaggagatt cgtctggaag ataacggcca ggccgagttg attttgcgta
     3541 atggcttaac cgtgccggtc agccgccgtt atctgaaaag cttaaaagag gcgattggcc
     3601 tgtaaaagac tgctaaaatg gctttttgcc tcatcaacac ctgaaggcct catgctaagt
     3661 aacgatattc tgcgcagcgt gcgctacatt ttgaaagcca ataataatga cctggtgcgt
     3721 attctggcgc tgggtaatgt cgaagccacc gcggaacaga tcgccgtctg gctacgtaaa
     3781 gaagacgaag agggttttca gcgttgtccg gacattgttt tgtcgtcatt cctcaatggc
     3841 ctgatttatg aaaaacgcgg caaggatgag tctgctccgg cactggagcc ggaacgtcgc
     3901 attaataaca acatcgtgct gaaaaaatta cgcatcgcgt tttcgctgaa aaccgatgac
     3961 attctggcta tcctcaccga acagcagttc cgcgtttcga tgccggaaat tacagcgatg
     4021 atgcgcgcac cggatcataa aaacttccgc gaatgcggcg atcaattttt acgttatttt
     4081 ctgcgtggac tggcagcgcg ccagcatgtg aagaaaagct aagacgggta tggcggccat
     4141 acgaaacatg gccgccgaca gattatttca cttctttaaa accagcggct ttcatcacca
     4201 gttccatttg cgccatagtg ataccttttt tggcatcttc agcagaaacg ttgattcctg
     4261 aaataccctg cagggcttta aaatccactt tttccatatc gatagtcacg ttttcctgcg
     4321 cgtaggtatc ggtataggtt aatttttctt caacacccgc gatgtttttg tatttggcgc
     4381 ttaacggctc aagtgtcttg gcagcatctt ctttggtggt tgcactaatg gaggcaaatt
     4441 gaattttggt ttcagaagat tgcttaagca ccttgtcacc tttgtagaca taggtaatgg
     4501 caatttcagt gccgttcaga ttggcgctga atttcttcga ttcttctttg tcaccgcagc
     4561 cagcaagaga gaaaaccaga acagatgcaa caacgaggga aaacagctta ttgaaagcct
     4621 tcatgtaaaa ctccatttta tttaatcaag aaactggtga ctctcaccag gggctatata
     4681 ggatatgcct aataccgtgg cgtgagcagt ccggaactgg agtagaactc ttagtaaaaa
     4741 gcactatttc atccttgttg ctgaagcatg gggaataatt gttcgcaaag caaaacaccg
     4801 ttattcattg cttctacccg tgcctcgctt tctgtattac gaaattgtac caacacatgt
     4861 gccagccgat aaaaacccac cgcggtgagg tcattcgcca gcaactctgc ctgactaata
     4921 gcgctctgtt cctgatagcg ccagccgtta tggagcagtt gaataagtaa cgcctggcag
     4981 cgcatcagca actgatgagc ggtagacggc acaggcaaaa cgctggcaga aggtagcggt
     5041 gccacaggcg cagtttccgc gtccagcgcc caggcacggg tttttgtcat catcacccgt
     5101 ggttccagtg tcaattgccc ctctacaaag ctgacaaagc cagaaaccag actcacgggg
     5161 tcgtctgttt gttgcaaaag cgccgccatg cgttcaacgg caaaaggaga acaggcagat
     5221 gccggaaggg ataacgtcag cagattatct tcaccttcgc cgctgattac ctgcgcatcc
     5281 agcgtctggc ggccgctgtc ccaaccgagt gaaatacact cagcgaccgg cagaataaat
     5341 aagttatcca cctgattaag aggccgtatg caggcggggg gacgctggcg taaatattcc
     5401 cgcaaagcca caatgcccgg ctggcgtaac ggcgcgctca acatttgcca ggcgtctggc
     5461 gacagcggca caacgctgct taagcggttg cgggtagcta acagcagctc gccatcggca
     5521 ctgcgttttg ctgcttgtga aacaatttgc ccacccgcca gtgcgccagc ctgaaaacta
     5581 aacagccgac gcgtagctgc cggtgagttt tcctgttcac ttcgcggcca actacgcgaa
     5641 agatgcaaaa tactgccggt gtcgggatcg gtaaaccaga tgcgtaaacc ataatgctca
     5701 atatcctgcc agcaacgcat acctaaagac accagccgca gatgatcaag ctttgcttct
     5761 ccggcaatgc cagagccaac gaccgtgcgc cacggcacag gaggaacttc accaacactg
     5821 tcgcgccggg ccatctcttg tgcgcagttt aatcgactgt ttaatgccgc aagctgacgt
     5881 aagcattctc cggcatgata gtggctggcg cgggcgtgga aggcatcaac gctggcgcgc
     5941 agttgccgta gcgattcact cacccatcgc cagctgcagc gttccgctgc ttgctgcgcg
     6001 cggctgaaag cggcctcgta gtgaataagc ggctggctga tgccgctcag ccataatgcc
     6061 tggcttagtt gttgaacata ttgacgacac gttttgcctt cttcgctggc aaacggatcg
     6121 tcagatgatg tgacgtgttc gctgcgcatc tgccagatta aatgagtcaa ttccgcttgc
     6181 tgcgcttttg cctggacaaa ggcctgtact gccagtacga catgttcgca aagtgtgcct
     6241 tcaatacaat cacaacgggc gaaacgaata ctgctgcggg aataaaaacg cacatcgctc
     6301 atcggtaagc gggcagaggg aatttcaccc ggcgcacaga acaactcaat ggtgatgcct
     6361 ttagcgacca gcgcctgtgc gcgtttgcgg gtggcatcgg gaagggtagc cagttcttcc
     6421 agccagattg ccggatccca ttcctcttct tttcccgtag gctgggcggt agcacaaagt
     6481 cgttgataac ttaacaccag catcacgcga tgacggcaca taccgctggc cccgcagctg
     6541 cactgagcct ctttcagtgc ctggccgttc gccagctggg tacggacacc gtcactgaag
     6601 gtggcgatta aagcgccgtt ctcatggctg atctccggga cgttgccatt ttccagttcc
     6661 ttaagactgc gcttaacaaa accggcattg cttaacgccg tcagggcctg cggtgtcagt
     6721 tctaataatt ccggacgtag tgaattcatg actgaagatt ctccgcaagc catgatgcca
     6781 gctcgcccgg tgtcatggcg gctatttgtg cgccgacatt aaccagcgcc tgggccgtat
     6841 cgcggtcata gcaaggtgtt gctgtgctat cgagcgctgc cagtcccagc actttgatgc
     6901 cgctctggac acactttttc acctgatgcg tcagtaatga tgatgaaccc ccttcgtaaa
     6961 aatcgctcac gaggataatg acgcttttcg ctggttgttc aataagttgc cgaccatact
     7021 ccacggcact ggcgatattg gtcccgccgc ccaactgtac tttcattaat aactctaccg
     7081 gatcggcaac gtctgccgtg agatcaacga cgcttgtgtc aaacgccacc agatgggtac
     7141 gaatgccggg taactgccac aaacaggccg ccatcaccgc agaggggatc accgaatcga
     7201 ccatcgagcc gctttgatca accagtaaga ccagttgcca ttgttcgctt tggcgtttaa
     7261 tgcggctgtt aaagcggggg gattcgatat acaacttgcc gtgttgcggg tgccagtgtt
     7321 gcaggttggc gcgcagagta cttttgaaat caaagtttcg cgccagtgga ataaatgagc
     7381 ggcgacggcg atcgcggaca ccagaaaaag cctgacgaac ttcctttgcc agtcgcgcca
     7441 taatttcttc aacaacctgg cgcacaatcc tgcgggcggc agccagtact tcggggttca
     7501 tcagatgttt ggtgtgcaaa acggcgcgta gcaggctttc ggaaggctgc atacgttcca
     7561 gcacgtcgag atttgtcacc acatcttcaa tgccgtagcg cagtacggca tcgctttcca
     7621 gccgctcaat cacctgttgc ggaaacagcg tgtggatact gttgaaccac tcaggagtgg
     7681 tgagatttga gccacctaat ccaccagagc gttcaccacg ctggagccgt tcaggatcgc
     7741 gcccatacag ccactccagc gcgtgatcta tctgccgggc gttgtcatcc agcccacaaa
     7801 gcgtcgtttc tgccgcttcg ccaagaatta atcgccagcg ttgtagctca cgggtggtca
     7861 gaagatcgtt cagttcagac atggaaaact ccccagtgtt gcagcgatgc cagtgcctgc
     7921 tgttcgagtt gttgatgatg tgcaatggct tgcggtggac aatgcaacgg catttgcagt
     7981 gccgaaacgg gaagttgcgc cagttgataa tgctcaagca cctgatgcgc cagcgtcccg
     8041 cgttctcgtg gcggtagcca ggccatcacc gcgcgtaaat cgggcagggc attgataaaa
     8101 ttggcatcac tcagttgatt caaatggctg ctgaaaccgg cgataaatgc aggttgacag
     8161 gccagttgat gacgggctaa tgccagcaaa ccgtgcagcg cctcgccgga ttgtgccggg
     8221 gataactgcg ccagcatcgt cagcgccgct tcggcactgg cgttgggatg ttccagacgc
     8281 attagtgcgc caagagccgc gccgcgatcc agcgccgggg catgaatcgc ctgactgcgt
     8341 cgctccagta aggctaccgc cgcagaaagc gaaacgccgg ataaattaac gccgctatgt
     8401 agatcgcgca gaatatggca aagcgcttgc cagctatgca ggtgagcgtg aaactccttt
     8461 tcatccggtc tgccgttaga ttcacacagc cacagcgtgc gatcgatagc cgcgcataac
     8521 gtcgtttgta atatctgcgc gccttgcata ccgctaattt catccagccg ccataaggca
     8581 tatagcactt ccagcgcctg gcccatttcg gcaaattgat tttcctgggc gattaataat
     8641 gtgagttgct ccagtaattg ttgactgaag gacgccagac ccgctaacgc cgcctggcta
     8701 agacatgtgg tgatactgcc gatgccaccc gcgtccagca tatcggcttc taatttatgg
     8761 cgtgcggctt cctgaagtgt tgcaccaaag catgcggcct caatcaatgc cgcatgctgg
     8821 ctaagcgggc gggttaattt ccagtgttct tcaccgttgc ctgcaagtgt cagtgtactt
     8881 ccctgctggc gtacaatccc agggatctcc agtattgcca gccgatgtaa cacctgactt
     8941 tgcgccagcc catcgggggt aaagcgattt aaggtaagct ccgccggaag agagattgcg
     9001 gtacgttcca gttcgcaggt gacatctttt ggcagaggcg gttgtggcgt ggaaggggca
     9061 agtttaccga atccgtcacc cgctaatgtg tctatcaacg ttagcagaat cggatcggta
     9121 tcgggatgaa taacgccgcg atagctccac ggcaacggtg cattcagggc ttctttaatc
     9181 agcgagcctg ctatggcatc cagccagtca gtgcgtaacg gtagtgtatg accgcgcaac
     9241 tgtgccagtg ccattgcatg cagatgtgcg gcagccatat ccgcgatcga agcaggcaag
     9301 ttgtgctggc gcaaacgggt gagaaccgtt tttagcagtt gttcaccggc ctgctgtaag
     9361 ccccactgcc agcaccagtt ttgccagacc ggggcaggca taccggaaag gtatcctgcc
     9421 agcacatcaa ggtgcttttc actgtagggg gtgagataac aacctgtaac ggcatttgcc
     9481 agcgagggca attctggctt gttaatttcc tgcggacatt cgcgccacat ttttgccagt
     9541 gcaggagcgt gccagccacc gcagacgact aacacgtcgc cattatttcg ctgcaccgcc
     9601 catgcaatcc agcgagccat aaaggcttcg cgctgacgat tgagtgcatc gccggggaaa
     9661 tcgccccgca gttgggcaaa atagtgcgcc agcgcagagg gtaatgcaat ttgctggctt
     9721 tcatcttcga acaagtgatc ccacagggtg tcgctgttat ccatgcgggt ggcacgcagc
     9781 agcaaggcct ggctttcctc ttgcgtatca ggcgaatcgt ccacttcttc actctgcgcc
     9841 cagcaaggca aatcgatgaa gtaagtttgt gcctgaatac gacgtgcggc ttgtagcgcc
     9901 tgccactccg gcgaaaattc agcaaatggc gtccaggcac cacgcccggg ggctgcaccg
     9961 tcctgatact ggcaataact gtaaatagct accggaagct ggtgggctaa aaacagttcg
    10021 tctacccggt cattaaaatc agccgggcct tcaatcaata cgtatcgtgg ccgctggctt
    10081 tcgattaacg atttcaccag ccgggcgcag gccggactat gatgccggat gccgacaatt
    10141 aacggctcgc tcatgcatct ttcctcacgg caggcggtgg cgggcttgat aataagcctg
    10201 ccagtgagct tctttatgtg tggcgactcg ttgttcgaag taacggcgca gacgagcgcg
    10261 atcttcttcg ttatctttga cgatggttcc ggcaatgcag tccaccaggt cggctggctc
    10321 acctgcgcga ttcgctaaaa accaggcgcg gacgcctacg gcgtgggcca cgttcacggc
    10381 ttcagcggtg gacataatcg ctgttagtgt atccattgac gttttctttt cgccgttggc
    10441 acgcagatcg cggaaggtgc ggaccagtaa ctccagtacc gcgtcaggca ctttatgcgg
    10501 aataccgcta tgagccagca aacgcgccga agcactggcg accagttcca gctcctgggc
    10561 gaaatccata atcggaaaga cagtttcaaa atcgaagcga cgctttagcg cagcactcat
    10621 ttcattgacg ccgcgatcgc gggtattggc agtggcaata atattaaagc cttctcgcgc
    10681 atagagctga ctggcttcac cagtgagttc cggcaccgtc atcaccctgt cagaaagcat
    10741 acctaacaga cagtcttgca cttccagcgg tgtacgcgtt atctcttcaa aacggacgat
    10801 tttgccgtcg cgcattccct ggtaaagcgg ggcagggacc agcgcttccg ttgatggacc
    10861 atgattgata agcagggcgt agttccagcc gtacttgatt tgatcttcgg tagtagatgc
    10921 gccgccctgg atggttaacc cggcatcgcc gctaatagcg gttgccagta attcagacag
    10981 gagagatttt gcggtgccag gttcccccac caacatcaaa ccgcgtccgg tggcaagagt
    11041 gactaacata cgttcgacag cggagggact aatcaccact ttacggctaa tattttgcgc
    11101 gctatcgcca aggataaaag cacgggccgc aggcaaactt aactgccaac cgggcgggca
    11161 aggtgcgtta tcattttgtt ttaattttgc cagttcatcg gcgtataaca cagcagcagg
    11221 cggacgctgc agatgattat tctgcggtga catatattca tccctgaaat gtattaatga
    11281 aataaacgat attttacgcg caataaatgt ttggcgcatt agttgtttga tcgaaaaata
    11341 tctggaaagc agatcacagt aaataaaaaa acctgctggt gaggcaggtt cttttattta
    11401 ctactttcag gcctaacacc acagcctgtg caacatcgtg ttccaacgaa cgaattataa
    11461 ccacggctgg accccgttgc aattaagata atgagattta taatccagac cgttgggacg
    11521 ttgcgccgga tcgaatctat ttcaagtcct ggctaccgga cgggtggtgc tgcaggtggt
    11581 gccctgatcc ggagtgcaac atcgtggtcc aacatacgta aaccagtatc gacaggcagt
    11641 gtaagggtaa ggtgctggtg ttgcgctcct taataaggag agcggatgga cacgctgaca
    11701 caaaagttaa ccgtgctcat tgctgtactg gagctattag tggctctgtt acggttgatt
    11761 gatttgttga agtaacgggc aacttgaaac gcatctaagg gggaatacag
//
LOCUS       DAJVSY010000131        11795 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.131, whole genome shotgun sequence.
ACCESSION   DAJVSY010000131 DAJVSY010000000
VERSION     DAJVSY010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11795
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.131"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            487..1143
                     /gene="pphA"
                     /locus_tag="OQQ19_003165"
     CDS             487..1143
                     /gene="pphA"
                     /locus_tag="OQQ19_003165"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-serine/threonine phosphatase"
                     /protein_id="HCS1804697.1"
                     /translation="MKQPAPVYQRIAGHQWRHIWLSGDIHGCLEQLRRKLWHCRFDPW
                     RDLLISVGDVIDRGPQSLRCLQLLEQHWVCAVRGNHEQMAMDALASQQMSLWLMNGGD
                     WFIALADNQQKQAKTALEKCQHLPFILEVHSRTGKHVIAHADYPDDVYEWQKDVDLHQ
                     VLWSRSRLGERQKGQGITGADHFWFGHTPLRHRVDIGNLHYIDTGAVFGGELTLVQLQ
                     "
     gene            complement(1144..1335)
                     /locus_tag="OQQ19_003166"
     CDS             complement(1144..1335)
                     /locus_tag="OQQ19_003166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416351.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebW family protein"
                     /protein_id="HCS1804698.1"
                     /translation="MFALVLFVCYLDGGCEDIVVDVYNTEQQCLYSMSDQRIRQGGCF
                     PIEDFIDGFWRPAQEYGDF"
     gene            complement(1440..1676)
                     /locus_tag="OQQ19_003167"
     CDS             complement(1440..1676)
                     /locus_tag="OQQ19_003167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707284.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1480 family protein"
                     /protein_id="HCS1804699.1"
                     /translation="MKTSVRIGAFEIDDGELHGESPGDRTLTIPCKSDPDLCMQLDAW
                     DAETSIPALLNGEHSVLYRTRYDQQSDAWIMRLA"
     gene            complement(1794..3233)
                     /gene="rsmF"
                     /locus_tag="OQQ19_003168"
     CDS             complement(1794..3233)
                     /gene="rsmF"
                     /locus_tag="OQQ19_003168"
                     /EC_number="2.1.1.178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416349.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1407)-C(5))-methyltransferase
                     RsmF"
                     /protein_id="HCS1804700.1"
                     /translation="MAQHTVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVN
                     TLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEA
                     SSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHA
                     NISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESN
                     QEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGD
                     LFPGANKALTEEGFLHVFPQIYDCEGFFVARLRKTQAIPALPAPKYKVGNFPFSPVKD
                     REAGQIRQAAAGVGLNWDENLRLWQRDKELWLFPVDIEALIGKVRFSRLGIKLAETHN
                     KGYRWQHEAVIALATPDNVNAFELTPQEAEEWYRGRDVYPQAAPVADDVLVTFQHQPI
                     GLAKRIGSRLKNSYPRELVRDGKLFTGNA"
     gene            complement(3313..5946)
                     /gene="yebT"
                     /locus_tag="OQQ19_003169"
     CDS             complement(3313..5946)
                     /gene="yebT"
                     /locus_tag="OQQ19_003169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416348.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-binding membrane homeostasis protein YebT"
                     /protein_id="HCS1804701.1"
                     /translation="MSQETPASTTEAQIKNKRRISPFWLLPFIALMIAGWLIWDSYQD
                     RSNTVTIDFMSADGIVPGRTPVRYQGVEVGTVQDISLSDDLRKIEVKVSIKSDMKDAL
                     REETQFWLVTPKASLAGVSGLDALVGGNYIGMMPGTGKEQDHFVALDTQPKYRLNNGD
                     LMIHLQAPDLGSLNSGSLVYFRKIPVGKVYDYAINPNKQGVVIDVLIERRFTDLVKKG
                     SRFWNVSGVDANVSISGAKVKLESLAALVNGAIAFDSPEESKPAEAEDTFGLYEDLAH
                     SQRGVIIKLELPSGAGLTADSTPLMYQGLEVGQLTKLDLNPGGKVTGEMTVDPSVVTL
                     LRENTRIELRNPKLSLSDANLSALLTGKTFELVPGDGEPRKEFVVVPGEKALLHEPDV
                     LTLTLTAPESYGIDTGQPLILHGVQVGQVIDRKLTSKGVTFTVAIEPQHRELVKGDSK
                     FVVNSRVDVKVGLDGVEFLGASASEWINGGIRILPGDKGEMKASYPLYANLEKALENS
                     LSDLPTTTVSLSAETLPDVQAGSVVLYRKFEVGEVITVRPRANAFDIDLHIKPEYRNL
                     LTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALKGAISFDNLSGASASQRKGDKRILY
                     ASETAARAVSGQITLHAFDAGKLAVGMPIRYLGIDIGQIQTLDLITARNEVQAKAVLY
                     PEYVQTFARGGTRFSVVTPQISATGVEHLDTILQPYINVEPGRGNPRRDFELQEATIT
                     DSRYLDGLSIIVEAPEAGSLGIGTPVLFRGLEVGTVTGMTLGTLSDRVMIAMRISKRY
                     QHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAFATPPGTPLAPKAQEGK
                     HFLLQESEPKEWREWGTALPK"
     gene            complement(5915..7198)
                     /gene="yebS"
                     /locus_tag="OQQ19_003170"
     CDS             complement(5915..7198)
                     /gene="yebS"
                     /locus_tag="OQQ19_003170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity lipid transport subunit YebS"
                     /protein_id="HCS1804702.1"
                     /translation="MALNTPQITPTKKITVRSIGEELPRGDYQRCPQCDMLFSLPEIN
                     SHQSAYCPRCQAKIRDGRDWSLTRLAAMAFTMLLLMPFAWGEPLLHIWLLGIRIDANV
                     MQGIWQMTKQGDTITGAMVFFCVIGAPLILVSSIAYLWFGNRLGMNLRPVLLMLERLK
                     EWVMLDIYLVGIGVASIKVQDYAHIQAGVGLFSFVALVILTTVTLSHLNVEELWERYY
                     PQRPATRRDEKLRVCLGCHFTGYPDQRGRCPRCHIPLRLRRRHSLQKCWAALLASIVL
                     LLPANLLPISIIYLNGGRQEDTILSGIMSLASSNIAVAGIVFIASILVPFTKVIVMFT
                     LLLSIHFKCQQGLRTRILLLRMVTWIGRWSMLDLFVISLTMSLINRDQILAFTMGPAA
                     FYFGAAVILTILAVEWLDSRLLWDAHESGNARFDD"
     gene            7328..7825
                     /gene="msrC"
                     /locus_tag="OQQ19_003171"
     CDS             7328..7825
                     /gene="msrC"
                     /locus_tag="OQQ19_003171"
                     /EC_number="1.8.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-methionine (R)-S-oxide reductase"
                     /protein_id="HCS1804703.1"
                     /translation="MNKTEFYADLNRDFNALMAGETSFLTTLANTSALLYERLTDVNW
                     AGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHAFDGHIACDA
                     ASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFF
                     ASVAG"
     gene            7922..8620
                     /gene="proQ"
                     /locus_tag="OQQ19_003172"
     CDS             7922..8620
                     /gene="proQ"
                     /locus_tag="OQQ19_003172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707288.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone ProQ"
                     /protein_id="HCS1804704.1"
                     /translation="MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVD
                     RVAGEMNLSKTQLRSALRLYTSSWRYLYGVKPGATRVDLDGNPCGELDEQHVEHARKQ
                     LEEAKARVQAQRAEQQAKKREAAAAAGEKEDAPRRERKPRPTTPRRKEGAERKPRAQK
                     PVEKAPKTVKAPREEQHTPVSDISALTVGQALKVKAGQNAMDATVLEITKDGVRVQLN
                     SGMSLIVRAEHLVF"
     gene            8640..10688
                     /gene="prc"
                     /locus_tag="OQQ19_003173"
     CDS             8640..10688
                     /gene="prc"
                     /locus_tag="OQQ19_003173"
                     /EC_number="3.4.21.102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy terminal-processing peptidase"
                     /protein_id="HCS1804705.1"
                     /translation="MNMFFRLTALAGLLAIAGQTFAVEDITRADQIPVLKEETQHATV
                     SERVTSRFTRSHYRQFDLDQAFSAKIFDRYLNLLDYSHNVLLASDVEQFAKKKTELGD
                     ELRSGKLDVFYDLYNLAQKRRFERYQYALSVLEKPMDFTGNDTYNLDRSKAPWPKNEA
                     ELNALWDSKVKFDELSLKLAGKTDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAF
                     AREIDPHTNYLSPRNTEQFNTEMSLSLEGIGAVLQMDDDYTVINSMVAGGPAAKSKAI
                     SVGDKIVGVGQTGKPMVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRTVTLT
                     RERIRLEDRAVKMSVKTVGKEKVGVLDIPGFYVGLTDDVKVQLQKLEKQNVSSVIIDL
                     RSNGGGALTEAVSLSGLFIPAGPIVQVRDNNGKVREDSDTDGQVFYKGPLVVLVDRFS
                     ASASEIFAAAMQDYGRALVVGEPTFGKGTVQQYRSLNRIYDQMLRPEWPALGSVQYTI
                     QKFYRVNGGSTQRKGVTPDIIMPTGNEETETGEKFEDNALPWDSIDAATYVKSGDLTA
                     FGPELLKEHNARIAKDPEFQNIMKDIARFNAMKDKRNIVSLNYAVREKENNEDDATRL
                     ARLNERFKREGKPELKKLDDLPKDYQEPDPYLDETVNIALDLAKLEKARPAEQPAPVK
                     "
     gene            10880..11761
                     /gene="htpX"
                     /locus_tag="OQQ19_003174"
     CDS             10880..11761
                     /gene="htpX"
                     /locus_tag="OQQ19_003174"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014229823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HCS1804706.1"
                     /translation="MMRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLMIMALLFGF
                     GGSFVSLLMSKWMALRSVGGEVIEQPRNERERWLVNTVATQARQAGIAMPQVAIYHAP
                     DINAFATGARRDASLVAVSTGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVN
                     TFVIFISRILAQLAAGFMGGNRDEGEESNGNPLIYFAVATVLELVFGILASIITMWFS
                     RHREFHADAGSAKLVGREKMIAALQRLKTSYEPQEATSMMAFCINGKSKSLSELFMTH
                     PPLDKRIEALRTGEYLK"
BASE COUNT         3033 a         2905 c         3044 g         2813 t
ORIGIN      
        1 cgcaacccca aatcgtaaag gaaaccgtag cacgtcgtat gcaagaacgt gccacggctg
       61 gctgatggat gttcgatagc gtgagtttga atgaaaatca gccggagatg attttacata
      121 attgctacgg aattattcaa tacaggaatt gcttgcgtct gcatggattg acctgaaatt
      181 ttcccgaaaa tttctctaaa aaactcgaaa aaaatggtaa ctggttgaat gtattaatat
      241 gcaatggtac gtgtcaggga ttaaaagatg aacgtaaatt tattcaacgc attaatttta
      301 aagggtttta ttgtttgttg acgaaaacag gaatcgtgtt cggtctcttt ttatctgtta
      361 aaagccagaa gcatttcctt cgctgacttt atagtcaacc ataacacaca ctctactgtc
      421 tgagtccagc gttttttaac attcttgtta agattatgtg atctttagca cgggaggaaa
      481 atattgatga aacagcctgc gcccgtttat cagagaattg cgggtcatca atggcgacat
      541 atctggcttt ctggcgatat acacggttgt cttgagcagt tgcgccgcaa attatggcat
      601 tgtcgttttg atccgtggcg agatttactt atctcagtgg gagacgttat cgatcgtggg
      661 ccgcaaagtt tacgttgtct gcagttactg gaacaacatt gggtttgtgc ggtaagaggc
      721 aatcatgaac agatggcgat ggatgcgctg gcatcccagc agatgtcttt gtggttgatg
      781 aatggcggcg actggtttat tgcgctggca gataatcaac agaaacaagc gaaaacggcg
      841 ctggaaaaat gtcagcattt gccctttatt cttgaagtac acagtcgcac cggcaagcat
      901 gttattgctc atgcggatta tccagatgat gtttatgaat ggcaaaagga cgttgatttg
      961 catcaggtct tgtggagccg ctcgcgatta ggtgaacgcc aaaaagggca gggaattaca
     1021 ggtgctgatc atttctggtt tggtcataca ccgttgcgac atcgcgtgga tattggcaac
     1081 ctgcattata ttgataccgg tgctgtcttt gggggcgaac tgactcttgt gcaattgcaa
     1141 tgattaaaaa tcaccgtact cctgtgcagg tcgccagaaa ccatctataa aatcctcaat
     1201 cggaaaacaa ccgccctggc ggatccgttg atcgctcata gaataaagac actgctgttc
     1261 cgtgttgtag acatccacaa caatatcttc acaaccgcca tccaggtagc aaacaaaaag
     1321 taccagcgcg aacatttcat ccccgaagtg tggtgccgta ccgttaagtt taggagagat
     1381 tttacaacgg gggaataacc aggacaaata acccgccatg ccgacgggtt ctttttggat
     1441 caggcaagac gcataatcca ggcatcagat tgttgatcgt aacgggtacg gtaaaggaca
     1501 gagtgttcgc catttagcag ggcagggata ctggtttcag catcccaggc atcgagttgc
     1561 atacataaat cggggtcaga tttacaagga atggttaacg ttcgatcacc cggcgattca
     1621 ccgtgtaatt cgccgtcgtc gatttcaaaa gcgcctatgc gcacactggt tttcatcttc
     1681 gtgctctcca tttagctgcc ggttgtggta cgaccagtcc gatcgcacca tttttcagcc
     1741 tagttgaggc agccgaatgt gccagtcaaa aagtgcgctt tttttgtgcg ctgtcaggcg
     1801 ttaccggtaa aaagtttccc atcgcgcacc agttcacgcg gatagctgtt tttcaatcgc
     1861 gaaccaatcc gtttggctaa accaatcggt tgatgctgga aagtaaccaa cacgtcatcc
     1921 gccactggcg cggcttgcgg gtaaacatcg cgcccgcgat accactcctc cgcttcctgc
     1981 ggtgtcagtt caaaagcgtt cacattgtcg ggggtggcaa gggcaataac tgcttcatgc
     2041 tgccagcgat aacctttgtt gtgcgtttcg gcaagtttaa tccccaagcg agaaaatcgg
     2101 actttaccga tcagggcttc aatgtccacc gggaacaacc acagttcttt gtcacgctgc
     2161 cagaggcgca ggttttcatc ccagtttaag ccaacacctg cagccgcctg gcgaatttgt
     2221 ccagcttcgc gatctttcac cgggctgaac ggaaaattac cgactttgta tttgggggcg
     2281 ggtaaggcgg gaatcgcctg agttttacgc agacgagcaa cgaagaagcc ttcgcagtcg
     2341 taaatttgtg ggaaaacatg caaaaagcct tcttcggtca gcgctttgtt tgcaccaggg
     2401 aagagatcgc caagtggtaa aaactctact gcgtcggggt aagtctcttt cagccacagg
     2461 caaacggctt cgttttcttc ctggtttaag gtacaggtcg agtaaaccag cgtaccacca
     2521 ggacgtaatg catgaaaggc gctgtcgata agctcccgtt gtgtagctgc gatttcctga
     2581 ttgctttctg gtgaccagtt ttttagcgca tcgggatctt tacgcaccac gccttcgccg
     2641 gagcagggag cgtccagcaa aatggcatca aacatttctg gcactgccgc accaaacacg
     2701 cggccatcaa aatgtgtgag cgcaacatta ctgatgccac agcggctgat attggcatgt
     2761 aacactttta cccgactggc ggaaaactca ttggcaagga ttgccccttc gttattcatc
     2821 cgcgcggcaa tttgcgtcgt ttttgagcct ggcgcagcag cgacatccat cacccgctgt
     2881 ggtgcattac cgtcagcaaa caaggcggcg acgggcaaca ttgaactggc ttcctgaata
     2941 taaaacaggc cacttaaatg ctcggcggta ctacccaatg gcaatgcatc ttcattgtcg
     3001 cgttcaatcc agaaaccttc ttcacaccac ggaattggcg taagcgtcca gccataagga
     3061 gcggttaatt gcaggaaatc agcaacggag attttcagcg tattaacgcg aatgctgcgg
     3121 cgcaacgggc gctgacaggc ggcaagaaaa tcatcaaatg agagcgtcga aggcatagct
     3181 tcgcgcattt gtgtcagaaa cgcgtccggg aaataaacgg tgtgttgggc cacgagcatg
     3241 taccactggc aaaaaaacag gcgcgcagtt tagcataaac gctccggcgc aggcacgccg
     3301 gagcagtggg cattatttgg gaagcgcagt tccccattca cgccactctt tcggttcact
     3361 ttcctgcaac aggaagtgtt tgccttcctg ggctttcggt gccagtggcg tacccggagg
     3421 cgtggcgaag gcgatgccgc cacggataaa ctggttaaag gtgccggttt tcactacgcc
     3481 gcccgtcaga ccaaagtcca gactgtaacc cgatgccaac cagaagacgg aattgttacg
     3541 caccaggtgt tgatagcgtt tactgatgcg catcgcaatc atcacgcgat ctgacaatgt
     3601 ccccagcgtc attccggtaa ccgtacctac ttccagacca cggaacagca caggcgtacc
     3661 aatacctaac gaaccggctt ccggtgcttc gacaataatg cttaagccat ccaggtaacg
     3721 cgaatcagta atagtagctt cttgcaactc aaagtcacgg cgaggattac cccgacctgg
     3781 ttcgacattg atatacggct ggaggatagt atctagatgc tcaacgcccg tggctgaaat
     3841 ttgcggtgtg accaccgaga agcgcgtacc gccgcgggcg aaggtctgga catactccgg
     3901 atagagcacc gcctttgcct gtacttcatt gcgcgcggta atcagatcca gcgtctggat
     3961 ttgcccgata tcaataccga gatagcgaat tggcatcccg accgccagtt ttccggcatc
     4021 gaaagcgtga agcgtaatct gcccactaac cgcacgggcc gctgtttcgg aagcatacag
     4081 aattcgtttg tcgcctttac gctgactggc gctggcaccg ctgaggttat cgaagctaat
     4141 ggctcccttt aatgctctgg agagcgggga tgcctgtacg gtcaggccac taccattcag
     4201 ctgaactttc gccccgcctt ctgcccagaa cacgctattg ctggtcagaa ggttgcgata
     4261 ctccggctta atatgcagat cgatatcaaa cgcgttagct cgcggacgca cggtaatcac
     4321 ttcaccaact tcaaatttac ggtacagcac taccgatcct gcctgcacat ccggcagcgt
     4381 ctctgcactc aaactcacgg ttgtggtggg taaatcgcta aggctgttct ccagcgcttt
     4441 ttccagattg gcatacagtg gatagctggc tttcatctca cctttatcgc ctggcagaat
     4501 acgtatcccg ccgttaatcc attctgaggc gctggcacca agaaactcaa cgccatccag
     4561 ccccaccttc acgtcgacac ggctgttgac gacaaatttg ctatcgcctt ttaccagttc
     4621 gcgatgctga ggctcgatgg cgacggtaaa ggtaacgcct ttgctggtga gtttacgatc
     4681 aataacctgg cctacctgca cgccgtgaag aatgagcggc tgacccgtat caataccgta
     4741 actttccggc gcggtcaggg tcagcgtcag aacatcaggt tcatgcagca gtgctttttc
     4801 gcctggcaca acaacgaact ctttgcgtgg ctcgccatcg ccgggtacca actcgaaggt
     4861 tttgccagtc agcagggcgc tgagattggc atcgctaagg gataatttcg gattacgtaa
     4921 ttcgatgcgg gtattttcac gaagcagggt aacgacgctg ggatcaactg tcatttcccc
     4981 agtgacttta ccaccaggat ttaaatccag tttagttagc tgtccgactt ccagtccctg
     5041 atacattaat ggcgtcgagt cggcggttaa tccggcccca ctcggcagtt ccagtttgat
     5101 tattacgcca cgctggctat gggcgaggtc ttcatacaga ccaaaggtat cttccgcctc
     5161 ggcaggtttc gactcttctg gtgaatcgaa ggcaatcgca ccgttaacca gtgccgccag
     5221 gctttccagt ttcaccttcg cgccactgat actgacattg gcatcaacgc cggaaacgtt
     5281 ccagaaacgg ctaccttttt tcaccagatc ggtaaaacgc cgctcgatca ggacatcaat
     5341 caccacgcct tgtttgttgg gattgatggc atagtcgtag acttttccca ccgggatctt
     5401 gcggaaatag accaatgaac cgctgttcag cgaaccgaga tcgggggctt gcaggtggat
     5461 catcagatcg ccattgttca gccgatattt cggttgggta tcgagtgcga caaagtgatc
     5521 ctgctcttta cctgtacccg gcatcatgcc gatatagttc ccaccgacga gggcgtccag
     5581 cccggagaca cctgccaacg atgcttttgg cgtcaccagc cagaattgag tctcttcgcg
     5641 cagcgcatct ttcatatcgg acttgatgct gaccttgact tcaatcttac gaagatcgtc
     5701 gctgaggctg atatcctgca ctgttccgac ttcaacgccc tgataacgaa caggcgtacg
     5761 gcccgggaca ataccatccg ccgacataaa gtcgatggtg acggtattac ttcggtcctg
     5821 ataactgtcc caaatcagcc aaccggcaat cattagcgcg atgaaaggca gcagccagaa
     5881 aggtgagata cggcgtttat ttttaatctg cgcttcagtc gtcgaagcgg gcgtttcctg
     5941 actcatgtgc atcccaaagt aagcggctgt ccagccattc cacagcaaga atagtcaaaa
     6001 ttacggctgc gccaaaataa aacgcagccg gtcccatagt aaaagcgagg atctgatcgc
     6061 gattaatcag cgacatggtt aaagatatga caaacaggtc gagcatcgac cagcgtccaa
     6121 tccaggtcac catccgcagt aacagaatgc gtgtgcgtaa accttgctgg catttaaaat
     6181 gaatgctcaa cagtaaagtg aacatgacga tcactttagt aaacggtacc agaatactgg
     6241 cgataaacac gattccggcg accgcaatgt tgctacttgc cagcgacata atcccggaaa
     6301 gaatcgtatc ttcctgccgg ccaccattca gataaatgat agaaataggc aataggttgg
     6361 ctggtaacaa caaaacgatt gacgctaaca gcgccgccca gcatttttgc aaactatgac
     6421 gacgacgcag gcgtagcggg atatggcaac gcgggcagcg accacgctga tcaggatagc
     6481 cggtaaaatg gcacccaaga cagacacgaa gtttctcgtc cctacgcgta gcggggcgct
     6541 gcggataata tcgctcccac agctcctcaa cattaagatg tgacaacgtc accgtcgtta
     6601 aaatcaccaa cgccacaaaa gagaacaagc cgacacccgc ctggatatgg gcataatcct
     6661 gtacctttat agaagcaacg ccaatgccga ccaggtagat atccagcatt acccactctt
     6721 taagacgctc aagcatcagc agtaccggac gtaaattcat tcccagtcgg ttaccaaacc
     6781 ataaatatgc tatggaggac accagaatga ggggggcacc aataacgcag aaaaagacca
     6841 tcgcccccgt tatcgtatcg ccctgtttgg tcatttgcca gatgccttgc atgacgtttg
     6901 cgtcgatacg aatacctaac agccagatat gcaacagcgg ttcgccccag gcaaacggca
     6961 tcagcaacag catggtgaaa gccattgccg ccaggcgcgt tagcgaccag tcgcgcccgt
     7021 cgcgaatttt tgcctgacag cgcggacaat aggcactctg atgagaattt atctcgggca
     7081 ggctaaacag catgtcacat tgcgggcaac gttggtaatc accacgcggc agttcctcgc
     7141 cgattgacct cactgttatc ttttttgtcg gcgtaatttg tggtgtgtta agagccatga
     7201 cgtgccaaat gtaataagaa ttaacattaa tcttaaccca tgatgggaat gatcttgagc
     7261 attaacgcat ttaatgctta ttttaatagg ctggcagttc caggtaagac aaacaagtga
     7321 ttatataatg aacaaaacag aattttacgc ggatttaaat cgcgacttta acgcgctgat
     7381 ggcgggagaa accagttttc tgacaacgct tgcgaacacc agtgcgttgt tatacgagcg
     7441 tctcactgac gtaaactggg caggttttta tttgcttgag gacgatacac tggtactcgg
     7501 accatttcag ggcaaaattg cctgtgtccg gatacccgtc gggcgcgggg tgtgcggcac
     7561 tgcggttgcc cgcaatcaag tgcagcgtat cgaggatgtt cacgcgtttg acgggcatat
     7621 tgcctgtgat gcggcgagta attctgaaat tgttctgccg ctggtggtga aaaatcagat
     7681 tattggtgtt cttgacatcg atagtaccgt cttcggtcgc tttacagacg aggacgagca
     7741 aggcttacgt cagcttgtgg cacagcttga aaaagtgctt gcaacgacgg attacaaaaa
     7801 attctttgcg agcgtcgcag gataatcaac ggataacgta gcatttactg gtagcgtcat
     7861 tataatgacg cctgttcatg cctgcgcttg ttggctacgt ccgttgtaat caggaaattt
     7921 catggaaaat caacctaagt tgaatagcag taaagaagta atcgcgtttc tggccgaacg
     7981 ttttccccac tgtttcagtg cggaaggtga agcgcgtccg ctgaaaatcg gtatttttca
     8041 ggatttggtc gatcgtgttg ccggggaaat gaacctgagc aaaacgcaat tacgatccgc
     8101 tttacgtctc tacacttcga gctggcgtta tctttacggt gttaaacccg gcgcaacgcg
     8161 tgtcgatctt gacggcaacc catgcggtga gctggacgag caacatgtag agcatgctcg
     8221 caagcagctt gaagaagcga aagcgcgtgt tcaggcacag cgtgctgaac agcaggcgaa
     8281 aaaacgcgaa gctgccgcag ctgctggtga gaaagaagac gcaccgcgcc gcgaacgcaa
     8341 gccacgtccg accacgccac gccgcaaaga aggcgctgaa cgtaaacctc gtgcgcaaaa
     8401 gccggtagag aaagcgccaa aaacagtaaa agcacctcgc gaagaacagc acaccccggt
     8461 ttctgacatt tcagctctga ctgtcggaca agctctgaag gtgaaagcgg gtcaaaacgc
     8521 gatggatgcc accgtattag aaatcaccaa agacggcgtc cgcgtccagc tgaattcggg
     8581 tatgtctttg attgtgcgcg cagaacacct ggtgttctga aacggaggcc gggccaggca
     8641 tgaacatgtt ttttaggctt accgcgttag ctggcctgct tgcaatagca ggccagacct
     8701 tcgctgtaga agatatcacg cgtgctgatc aaattccggt attaaaggaa gagacgcagc
     8761 atgcgacggt aagtgagcgc gtaacgtcgc gcttcacccg ttctcattat cgccagttcg
     8821 acctcgatca ggcattttcg gccaaaatct ttgaccgcta cctgaatctg ctcgattaca
     8881 gccacaacgt gctgctggca agcgatgttg aacagttcgc gaaaaagaaa accgagttag
     8941 gcgatgaact gcgttcaggc aaactcgacg ttttctacga tctctacaat ctggcgcaaa
     9001 agcgccgttt tgagcgttac cagtacgctt tgtcggtact ggaaaagccg atggatttca
     9061 ccggcaacga cacttataac cttgaccgca gcaaagcgcc ctggccgaaa aacgaggctg
     9121 agttgaacgc gctgtgggac agtaaagtca aattcgacga gttaagcctg aagctggcag
     9181 gaaaaacgga taaagaaatt cgtgaaaccc tgacacgccg ctacaaattt gccattcgtc
     9241 gtctggcgca aaccaacagc gaagatgttt tctcgctggc aatgacggcg tttgcgcgtg
     9301 aaatcgaccc gcataccaac tatctttccc cgcgtaatac cgaacagttc aacactgaaa
     9361 tgagtttgtc gctggaaggt attggcgcag tgctgcaaat ggatgatgac tacaccgtta
     9421 tcaattcgat ggtggcaggt ggtccggcag cgaagagtaa agctatcagc gttggtgaca
     9481 aaattgtcgg tgttggtcaa acaggcaagc cgatggttga cgtgattggc tggcgtcttg
     9541 atgatgtggt tgccttaatt aaagggccga agggcagtaa agttcgtctg gaaattttac
     9601 ctgctggtaa agggaccaag acccgcactg taacattgac ccgtgaacgt attcgtctcg
     9661 aagaccgcgc ggttaaaatg tcggtgaaga ccgtcggtaa agagaaagtc ggcgtgctgg
     9721 atattccggg cttctatgtg ggtttgacag acgatgtcaa agttcaactg cagaaactgg
     9781 aaaaacagaa tgtcagcagt gtgatcatcg acctgcgtag caatggcggt ggggcgttga
     9841 ctgaagcggt atcgctctca ggtctgttta ttcctgcggg tcccattgtt caggtccgcg
     9901 ataacaacgg caaggttcgt gaagacagcg ataccgacgg gcaggtgttc tataaaggcc
     9961 cgctggtggt actggttgac cgtttcagtg cttcggcttc agaaatcttt gccgcggcaa
    10021 tgcaggatta cggtcgtgcg ctggttgtgg gtgaaccgac gtttggtaaa ggcaccgttc
    10081 agcaataccg ttcattgaac cgtatttacg atcagatgtt acgtcctgaa tggccagcgc
    10141 tgggttctgt gcagtacacg atccagaaat tctatcgcgt taacggcggc agtacgcaac
    10201 gtaaaggcgt aacgccagac atcatcatgc cgacgggtaa tgaagaaacg gaaacgggtg
    10261 agaaattcga agataacgcg ctgccgtggg atagcattga tgccgcgact tatgtgaaat
    10321 caggcgattt aacggccttt gggccggagc tgctgaagga acataatgcg cgtatcgcga
    10381 aagatcctga gttccagaac atcatgaagg atatcgcgcg cttcaacgct atgaaggaca
    10441 agcgcaatat cgtttctctg aactacgctg tgcgtgagaa agagaataat gaagatgatg
    10501 cgacgcgtct ggcgcgtttg aacgaacgct ttaaacgcga aggtaaaccg gagttgaaga
    10561 agctggatga tctaccgaaa gattaccaag agccggatcc ttatctggat gagacggtga
    10621 atatcgcact cgatctggcg aagcttgaaa aagccagacc cgcggaacaa cccgctcccg
    10681 tcaagtaata tcaatcaggc acaagaaatt gtgcctgatt ttttaacagc ggcaagatgc
    10741 cgtaaatcag atgctacaaa atgtaaagtt gtgtctttct ggtgacttac gcactatcca
    10801 gacttgaaaa tagtcgcgta acccatacga tgtgggtatc gcatattgcg ttttgttaaa
    10861 ctgaggtaaa aagaaaatta tgatgcgaat cgcgctcttc ctgctaacga acctggccgt
    10921 aatggtcgtt ttcgggctgg tactgagcct gacagggata cagtcgagca gcgttcaggg
    10981 gctgatgatc atggccttgc tgttcggttt tggtggttcc ttcgtttcgc ttctgatgtc
    11041 caaatggatg gcattacgat ctgttggcgg ggaagtgatc gagcaaccgc gtaacgaaag
    11101 ggaacgttgg ctggtcaata ctgtagcaac ccaggctcgt caggcaggga tcgctatgcc
    11161 gcaagtggct atctaccatg cgccggacat caacgctttt gcaaccggtg cgcgccgtga
    11221 tgcctctctg gttgctgtca gcaccggttt gctgcagaac atgagcccgg atgaagccga
    11281 ggcggtaatt gctcacgaaa tcagccacat cgccaatggt gatatggtca ccatgacgct
    11341 gattcagggc gtggtgaaca ccttcgttat ctttatttcc cgtattctgg cgcagcttgc
    11401 cgcgggtttt atgggcggaa atcgtgatga aggtgaagag agcaacggca acccgctgat
    11461 ctactttgcg gttgcaacgg ttctggaact ggtgtttggt attctggcga gcattatcac
    11521 catgtggttc tcgcgtcatc gtgaattcca tgctgatgcc ggttcggcaa aactggttgg
    11581 tcgcgagaaa atgattgccg cgctgcagcg cctgaaaacc agctatgaac cgcaagaagc
    11641 aaccagcatg atggctttct gcattaatgg taagtcgaaa tcgctcagtg agttgttcat
    11701 gactcacccg ccgctggata aacgaattga agctctgcgt acgggtgaat acctgaagta
    11761 atatgaagta aatactaaaa agtgcgtcct gatcg
//
LOCUS       DAJVSY010000132        11785 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.132, whole genome shotgun sequence.
ACCESSION   DAJVSY010000132 DAJVSY010000000
VERSION     DAJVSY010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11785)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11785)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11785
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.132"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            30..1415
                     /locus_tag="OQQ19_003175"
     CDS             30..1415
                     /locus_tag="OQQ19_003175"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000398460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HCS1804707.1"
                     /translation="MEGGWNEGGKGISIADVMTAGAHGVPREVTEGVIDGLNYPNHEA
                     IDFYHRYKTDIQLFAEMGFKCFRTSIAWTRIFPQGDEQEPNEEGLQFYDDLFDECLKQ
                     GMEPVVTLSHFEMPYHLVTKYGGWRNRKLIDFFIRFASTVFTRYKEKVKYWMTFNEIN
                     NQVNFSESLCPFTNSGILYSPEEDINEREQIMYQAVHYELVASALAVQTGKSINPEFN
                     IGCMIAMYPIYPLTCVPNDMMMATKAMHRRYWFTDVHARGYYPQHMLNYFARKGFNLD
                     ITPEDNAILASGCVDFIGFSYYMSFTTQFSPDNPQLDYVEPRDLVSNPYIDTSEWGWQ
                     IDPAGLRYSLNWFWDHFQLPLFIVENGFGAVDQRQADGTVNDHYRIDYFASHIREMKK
                     AVVEDGVDLIGYTPWGCIDLVSAGTGEMKKRYGMIYIDKDNEGKGTLERIRKASFYWY
                     RDLIANNGENI"
     gene            complement(1472..1690)
                     /gene="marB"
                     /locus_tag="OQQ19_003176"
     CDS             complement(1472..1690)
                     /gene="marB"
                     /locus_tag="OQQ19_003176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple antibiotic resistance protein MarB"
                     /protein_id="HCS1804708.1"
                     /translation="MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEQ
                     PPFDLNHMGTGSDKSDALGVPYYNQHAM"
     gene            complement(1722..2105)
                     /gene="marA"
                     /locus_tag="OQQ19_003177"
     CDS             complement(1722..2105)
                     /gene="marA"
                     /locus_tag="OQQ19_003177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707445.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MDR efflux pump AcrAB transcriptional activator
                     MarA"
                     /protein_id="HCS1804709.1"
                     /translation="MSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQR
                     MFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDV
                     PPHKYRMTNMQGESRFLHPLNHYNS"
     gene            complement(2125..2559)
                     /gene="marR"
                     /locus_tag="OQQ19_003178"
     CDS             complement(2125..2559)
                     /gene="marR"
                     /locus_tag="OQQ19_003178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310164.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple antibiotic resistance transcriptional
                     regulator MarR"
                     /protein_id="HCS1804710.1"
                     /translation="MKSTSDLFNEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFK
                     VLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTT
                     SGAAICEQCHQLVGQDLHQELTKNLTADEVATLEHLLKKVLP"
     gene            2771..3436
                     /gene="marC"
                     /locus_tag="OQQ19_003179"
     CDS             2771..3436
                     /gene="marC"
                     /locus_tag="OQQ19_003179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter MarC"
                     /protein_id="HCS1804711.1"
                     /translation="MLDLFKAIGLGLVVLLPLANPLTTVALFLGLAGNMNSAERNRQS
                     LMASVYVFAIMMVAYYAGQLVMDTFGISIPGLRIAGGLIVAFIGFRMLFPQQKAIDSP
                     EAKSKSEELEDEPSANIAFVPLAMPSTAGPGTIAMIISSASTVRQSSTFADWVLMVAP
                     PLIFFLVAVILWGSLRSSGAIMRLVGKGGIEAISRLMGFLLVCMGVQFIINGILEIIK
                     TYH"
     gene            complement(3461..4651)
                     /gene="ydeA"
                     /locus_tag="OQQ19_003180"
     CDS             complement(3461..4651)
                     /gene="ydeA"
                     /locus_tag="OQQ19_003180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose MFS transporter"
                     /protein_id="HCS1804712.1"
                     /translation="MTTNTVSRKVAWLRVVTLAVAAFIFNTTEFVPVGLLSDIAQSFH
                     MQTAQVGIMLTIYAWVVALMSLPFMLMTSQVERRKLLICLFVVFIASHVLSFLSWSFT
                     VLVISRIGVAFAHAIFWSITASLAIRMAPAGKRAQALSLIATGTALAMVLGLPLGRIV
                     GQYFGWRMTFFAIGIGALITLLCLIKLLPLLPSEHSGSLKSLPLLFRRPALMSIYLLT
                     VVVVTAHYTAYSYIEPFVQNIAGFSANFATALLLLLGGAGIIGSVIFGKLGNQYASAL
                     VSTAIALLLVCLALLLPAANSEIHLGVLSIFWGIAMMIIGLGMQVKVLALAPDATDVA
                     MALFSGIFNIGIGAGALVGNQVSLHWSMSMIGYVGAVPAFAALIWSIIIFRRWPVTLE
                     EQTQ"
     gene            complement(4801..5915)
                     /gene="yneK"
                     /locus_tag="OQQ19_003181"
                     /pseudo
     CDS             complement(4801..5915)
                     /gene="yneK"
                     /locus_tag="OQQ19_003181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707449.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative protein YneK"
     gene            complement(5993..6874)
                     /locus_tag="OQQ19_003182"
     CDS             complement(5993..6874)
                     /locus_tag="OQQ19_003182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1804713.1"
                     /translation="MDLTQLEMFNAVAEAGSITQAAAIVLRVPSNLTIRLRQLETELG
                     VDLFIRENQRLRLSPAGHNFLRYSQQILALVDEARSVVAGDEPQGLFSLGSLESTAAV
                     RIPATLAEFNHRYPKIQFSLSTGPSGTMLEGVLEGKLNAAFIDGPINHTAIDGIPVYR
                     EELMIVTPQGHAPVIRASQVNGSNIYAFRANCSYRRHFESWFHADGAAPGTIHEMESY
                     HGMLACVVAGAGIALIPRSMLESMPGHHQVEAWPLAEQWRWLTTWLVWRRGAKTRPLE
                     AFIQLLDVPDSAKQGYQ"
     gene            6975..8363
                     /gene="sad"
                     /locus_tag="OQQ19_003183"
     CDS             6975..8363
                     /gene="sad"
                     /locus_tag="OQQ19_003183"
                     /EC_number="1.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416042.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate-semialdehyde dehydrogenase"
                     /protein_id="HCS1804714.1"
                     /translation="MTITPATHAISINPATGEQLSVLPWAGANDIENALQLAAAGFRD
                     WRETNIDYRAEKLRGIGKALRARSEEMAQMITREMGKPINQARAEVAKSANLCDWYAE
                     HGPAMLKAEPTLVENQQAVIEYRPLGTILAIMPWNFPLWQVMRGAVPIILAGNGYLLK
                     HAPNVMGCAQLIAQVFKDAGIPQGVYGWLNADNDGVSQMIKDSRIAAVTVTGSVRAGA
                     AIGAQAGAALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFII
                     EEGIASAFTERFVAAAAALKMGDPRDEENALGPMARFDLRDELHHQVEKTLAQGARLL
                     LGGEKMAGAGNYYPPTVLANVTPEMTAFREEMFGPVAAITVAKDAEHALELANDSEFG
                     LSATIFTTDETQARQMAARLECGGVFINGYCASDARVAFGGVKKSGFGRELSHFGLHE
                     FCNIQTVWKDRI"
     gene            8427..9353
                     /gene="glsB"
                     /locus_tag="OQQ19_003184"
     CDS             8427..9353
                     /gene="glsB"
                     /locus_tag="OQQ19_003184"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase B"
                     /protein_id="HCS1804715.1"
                     /translation="MAVAMDNAILENILRQVRPLIGQGKVADYIPALATVDGSRLGIA
                     ICTVDGQLFQAGDAQERFSIQSISKVLSLVVAMRHYSEEEIWQRVGKDPSGSPFNSLV
                     QLEMEQGIPRNPFINAGALVVCDMLQGRLSAPRQRMLEVVRGLSGVSDISYDTVVARS
                     EFEHSARNAAIAWLMKSFGNFHHDVTTVLQNYFHYCALKMSCVELARTFVFLANQGKA
                     IHIDEPVVTPMQARQINALMATSGMYQNAGEFAWRVGLPAKSGVGGGIVAIVPHEMAI
                     AVWSPELDDAGNSLAGIAVLEQLTKQLGRSVY"
     gene            9353..9712
                     /locus_tag="OQQ19_003185"
     CDS             9353..9712
                     /locus_tag="OQQ19_003185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4186 domain-containing protein"
                     /protein_id="HCS1804716.1"
                     /translation="MQSLDPLFARLSRSKFRSRFRLGMKERQYCLEKGAPVIEQHAAD
                     FVAKRLAPALPANDGKQTPMRGHPVFIAQHATATCCRGCLAKWHNIPQGVSLSEEQQR
                     YIVAVIYHWLVVQMNQP"
     gene            9851..11269
                     /locus_tag="OQQ19_003186"
     CDS             9851..11269
                     /locus_tag="OQQ19_003186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310156.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HCS1804717.1"
                     /translation="MHVHPISTFRLFQEGHLLRNSIAIFALTTLFYFIVAELRLVHEL
                     SLFWPLNGVMAGVFARYVWLNRLHYYAISYVAMLVYDAITTEWGLVSLVINFSNMMFI
                     VTVALLVVRDKRLGKNKYEPVSALRLFNYCLIAALLCAIVGAIGSVSIDSLDFWPLLA
                     DWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAF
                     PLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPEMFSARLGIA
                     TMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTV
                     MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP
                     VDGLLMAEKIRKGVELQPFTWQQKTLYLMVSIGVGSGRASYRTLTDDFNKLMVEADTC
                     LYRSKKDGRNRTSTMRYGEEVV"
     gene            11496..11735
                     /locus_tag="OQQ19_003187"
                     /pseudo
     CDS             11496..11735
                     /locus_tag="OQQ19_003187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310155.1"
                     /note="catalyzes the formation of D-tagaturonate from
                     D-altronate; incomplete; partial in the middle of a
                     contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tagaturonate reductase"
BASE COUNT         2989 a         2661 c         3029 g         3106 t
ORIGIN      
        1 tatggggcgg cgcggtagcc gcgcatcagt tggaaggtgg ctggaatgaa ggaggaaaag
       61 gcatcagtat cgctgatgtg atgactgctg gcgctcacgg ggtgccgcgt gaagtgacag
      121 aaggcgttat cgacgggctt aattatccca atcatgaagc aattgatttt tatcatcgct
      181 ataaaacaga tattcagtta tttgccgaga tgggattcaa atgctttcga acttccattg
      241 cctggacacg aatctttccg caaggtgacg aacaggagcc gaatgaagag ggtttacaat
      301 tttatgatga tctgttcgat gaatgcctta agcagggaat ggaacctgtg gtgacgcttt
      361 cacattttga gatgccttat catctggtga caaaatatgg tggctggcga aaccgtaaac
      421 tgatcgactt ttttatccgc ttcgcatcaa cggtcttcac gcgctataaa gaaaaagtaa
      481 agtactggat gacgtttaac gaaatcaata atcaggtgaa tttcagcgaa agcctgtgtc
      541 catttactaa ttccggtatc ttgtattcgc cagaggaaga tatcaatgag cgcgaacaaa
      601 taatgtacca ggcggtacat tacgagttag ttgccagtgc cctggcggta cagactggaa
      661 aatcgatcaa tcctgaattt aacattggct gtatgatcgc catgtatccc atctatcctc
      721 tgacgtgtgt acccaacgat atgatgatgg ccacgaaagc aatgcatcgt cgttactggt
      781 ttactgatgt tcatgctcgt ggatattatc cgcaacatat gctgaattac tttgccagga
      841 aaggattcaa cctcgatatc acaccagaag ataacgcgat tcttgccagt ggttgtgtcg
      901 actttatcgg ctttagctac tacatgtctt ttacgacaca attttcgccc gataacccgc
      961 aactggatta tgttgaacca cgagatttgg tcagcaaccc ttatatcgat acatccgaat
     1021 ggggatggca aattgatccg gcagggctac gttattcact caactggttc tgggatcatt
     1081 tccagttgcc gctgtttatt gtcgaaaatg gatttggtgc ggttgaccag agacaagctg
     1141 acggcacggt gaacgatcac tatcgcattg attactttgc ttcccatatt cgggaaatga
     1201 aaaaagccgt agttgaagat ggtgttgact taattggcta caccccgtgg ggctgcattg
     1261 acctggtttc tgccggaaca ggggaaatga aaaagcgcta cggaatgatt tatatcgata
     1321 aagacaacga agggaaggga acgctggaac ggatacgtaa agcgtcgttt tactggtatc
     1381 gggatctcat cgccaacaat ggcgaaaata tttgagactt gaggaagata ttacggagat
     1441 gtcaggctct gtgatcagag cctgacaata actacatagc gtgttgatta taatagggca
     1501 cgccgagcgc atccgactta tcactgccag tacccatgtg atttaaatca aacggtggtt
     1561 gttcctgcga tgggggaaca accacgacat tggcacaaga agtaacaact ggctgcgtgg
     1621 tttgttccgc aacgccctgc gcggaaaaga gaataagcgc agctgctatt gcggatgaaa
     1681 gtggtttcat gattgcctca gtgacgttgt cacgttatca actagctatt gtaatgattt
     1741 aatggatgta aaaagcgcga ttcgccctgc atattggtca tccggtattt atgtggcgga
     1801 acatcaaagt aatttttgaa ggttcgggtc agagtttgtt gcgactcgaa gccatatcgt
     1861 tctgccagat agagtatcgg ctcgttactt tccttcagct tttgcgcgat ttccgtcatc
     1921 ttacggctgc ggatgtattg gcctaatgaa tgaccggttt cttttttaaa catccgttgc
     1981 aggtgccatt tagagtaacc tgaacgctct gacactttct ccagtgacag tggcgattcc
     2041 aggttgtcct cgatccagtc caaaatgcta tgaatggtaa tagcgtcagt attgcgtctg
     2101 gacatcgtca tacctctttt ttgtttacgg caggactttc ttaagcaaat gctcaagtgt
     2161 tgccacttcg tccgccgtca ggttttttgt taattcttga tgcaggtcct ggccaactaa
     2221 ttgatggcat tgttcgcata ttgccgcgcc gctggtggta agttttacca gtacgccgcg
     2281 cttatcattc gggttcggca acctttcaac ccagccttta cagaccaggc gatccagcat
     2341 acgggtcagt gctccaaggt cgacagacaa cacttttttc agttcaaccg gagtaataca
     2401 cgccgcgcag cggatagagc agagcacctt aaactgtgcc gcggtaatat ccagcggaga
     2461 cagatactcg ttaagcagac gatctttctt ctgattaacc atatggatta agcgacccaa
     2521 tggaataatt tcattgaaca gatcgctggt acttttcaca ttagttgccc tggcaagtaa
     2581 ttagttgcag ggggtaatat tgcccaggca agtataagtc aaataaatga attgaccgat
     2641 gccacgtttt gctaaatcgg ttcaagtttt ggtcaatgcg atgcaaggtt agctaaagag
     2701 tgacacttta tccttgttta ccccttatac ttttcgctga taacccagat acactggata
     2761 acaaccacca atgttagatt tgtttaaagc aattggcctg gggctggtgg tgttactgcc
     2821 gttagctaac ccattaacaa ctgtcgcgtt atttcttggc ctggcaggca acatgaacag
     2881 tgccgaacgt aatcgtcagt cgttgatggc ctcggtgtac gtatttgcca tcatgatggt
     2941 ggcgtattac gccgggcaac tggtgatgga tacatttggc atttcgattc ccggtctgcg
     3001 aattgcaggc ggcttaatcg tcgcgtttat cggttttcgg atgctctttc cgcaacagaa
     3061 agcgattgat tcaccggagg cgaaaagcaa gtcggaagag ctggaagatg aacccagtgc
     3121 caatattgcc tttgtgccgc tagcaatgcc aagtaccgct ggtccgggaa ccatagcgat
     3181 gattattagc tcggcgtcca cagtgcgtca gagttcaacc ttcgctgatt gggtactgat
     3241 ggttgcgccg ccgctgatct ttttcctggt ggcggttatt ttgtggggaa gcctacgcag
     3301 ctccggcgca attatgcggc tggtgggcaa gggtggcatt gaagcgatct cccgtctgat
     3361 gggattcctg ctggtatgta tgggtgtgca gtttattatt aacggcatcc tggaaatcat
     3421 taaaacgtac cattaaaaaa ggcccgaatg ggcctttcaa ctattgcgtc tgttcttcga
     3481 gtgtcactgg ccagcggcga aatataatga ttgaccatat taacgcggca aaagcaggca
     3541 ccgcgcccac ataaccaatc atcgacattg accagtgcaa actcacctga ttacctacca
     3601 acgcacccgc cccgattcca atattaaata tgccggagaa tagcgccatc gcgacgtcgg
     3661 tagcatctgg tgccagcgcc agcactttaa cctgcatacc aagcccgatg atcatcatcg
     3721 cgatccccca gaaaatactc agcaccccga ggtgtatttc actgttcgcc gcaggtagca
     3781 gcagtgccag acacaccagc aacagcgcaa tcgccgtact caccaacgca gacgcatact
     3841 gattacccag tttaccgaaa atcacgctgc caataatgcc cgcaccaccg agtaataaca
     3901 gtaatgccgt ggcaaagttg gcgctgaatc ccgcaatgtt ttgcacaaaa ggctcgatat
     3961 agctgtatgc cgtgtaatgg gcggtgacaa ccaccacagt taacaaataa atgctcatca
     4021 atgccgggcg gcggaacaat agcgggaggc ttttcaatga accggaatgc tcactgggca
     4081 gtaagggaag taacttaatc aggcacaaaa gggtgataag cgccccaata ccaatcgcga
     4141 agaaggtcat tcgccaaccg aaatactgcc ccacaatgcg cccgagaggt aaacctaaga
     4201 ccatcgccag tgctgtaccg gtggcaatta aactcaaggc ctgtgcccgc ttcccggccg
     4261 gagccatacg gatcgccaga gacgccgtaa tcgaccagaa aatcgcatgt gcaaaagcca
     4321 caccaatgcg actgatcacc agaacggtaa agctccacga taaaaacgac agtacgtggc
     4381 tggcaataaa caccacaaac aggcagatca gtaatttgcg ccgttcaacc tgactggtca
     4441 ttaacataaa aggcaatgac attagcgcta ctacccatgc gtaaatggtc aacatgatgc
     4501 cgacctgagc ggtttgcatg tgaaaacttt gcgcaatgtc agagagcagg ccaacaggga
     4561 caaattcggt ggtgttgaag atgaaggcgg cgactgccag cgtaacgacc cgtagccacg
     4621 ccactttgcg ggaaacagtg tttgttgtca taacagatta tcgggtgagt tgcgaaaaag
     4681 tgatgaaatg atcttaaaac ggttaatgat gtgaatacaa tgcatttgtg atctggatcg
     4741 cgttttccgt ttctctgacg ctgattctgt tccgcgtcag agagtcggta acatcacggt
     4801 ttaatgacgt tcagggaggt ctggcgtttt ggcggttgcg ggtataggtg gtctgacagg
     4861 ggagcgaggc ctgtttttca ccaggtcttc gtgagtaact tttggcggcg tttcattttt
     4921 tacaaacagt ttgagggtcc tgcgcgccat atgcttgata attttatcat cacttaatga
     4981 tgctggcatc aacacgtcat tcagatcact ttcattggga ttcataaatt ggtgatagtg
     5041 caataacata ttggcgaaaa ataaaaaaaa gtcctgaaaa tgaggagatt cttgttctgc
     5101 taaaagggat aaaaagcaga tgcagacttc gggtagtaca tgtttgttag aacctaatga
     5161 atccatcagg ctttgcaata aatcctcttt taattcgccg tctgttatgt cgagaatggc
     5221 ggtgatcaag ttaggatctt tattgacgaa ccatctgtga acctcagagt tactccataa
     5281 tcgggggagt atgacaaaat taccgcgaga gataaaattc aggacaagca aatcaaactg
     5341 gcgtaagtaa tctgcagcgg tatggtgatc cggaggcagg ggttcaatat gtggtgtatg
     5401 cgcttttttg atggggacgc caaggtggat cattggaaat tgttcaataa aatcattcag
     5461 aaacagaaag agcacacgct cgacgccggt gtgaaatacg cgccccatag tgacaggctt
     5521 tgggttggga gcgcaaaaat attaatttct ccatcatggc gaaaattatc taaataaata
     5581 gggtttaaat ttattactac ctgaaattca atattttctt tgtgtcttcc attcttgacg
     5641 ggataagtga gtttaaactg aaccttttca ttgtatagtg tgtcgttacc ccgaaaagaa
     5701 gtcctctgaa tatatgataa gttatcaagg ttgttaaata tcttttttgt ggctgagttg
     5761 gtgtttaaag acgtgcgcca ctcttcatca catattatgg tactgagtgc atcaataaaa
     5821 ttctttaaaa cttcttttac ctgaggtgca atattacgta cgggaaaatc atcaggaaga
     5881 aatatgtaat tactgatgct tactggcgta accatatttg ccccatatag tcataagtca
     5941 tcggaacatc actatatagg gcatttgagc tgcaagaact atcaaaaata gctcattggt
     6001 aaccctgttt tgccgagtca ggcacatcca gtagttgaat aaatgcctca agcggacgcg
     6061 ttttcgcacc acgacgccag accagccagg ttgttaacca acgccattgc tcagctaacg
     6121 gccacgcttc aacctggtga tgccccggca tactttccag catagagcgt ggaataagcg
     6181 caatgcctgc tcctgcgacc acacaggcca acatcccgtg atacgactcc atctcgtgaa
     6241 tagttcccgg agcggcaccg tcagcatgaa accagctctc gaagtggcga cgatacgaac
     6301 aattggcgcg gaaggcataa atgttactgc cgttaacctg actggcgcgg attactggcg
     6361 catgaccttg tggcgtgacg atcatcagct cctcgcggta taccggtatc ccgtcaatgg
     6421 cagtatggtt aatgggccca tcaataaatg ccgcattcag ttttccctcc agcactcctt
     6481 ccagcatagt gccggaaggg ccggtggaaa gtgaaaactg aattttggga taacgatggt
     6541 tgaattccgc cagcgtggcc ggaatgcgca ctgctgcggt gctttccagc gaaccaagag
     6601 aaaataaacc ttgcggctca tcgccagcga caacgctccg cgcttcatcc actaacgcga
     6661 gaatttgttg gctatagcgt aaaaagttat gcccggcagg agagagacgt aaacgctgat
     6721 tctcgcgaat aaacagatct acccccagtt ctgtttccag ctggcgtaga cggatagtga
     6781 gattcgacgg cacgcgaagc actattgctg ctgcctgggt tatgctgcca gcttcggcaa
     6841 ccgcgttgaa catctccagt tgggtcagat ccataatatt ctcgattcgt gaataagtgg
     6901 cttaatatta ttcattttaa agcaagagta aatctgcgta tcttcatacc atgactcata
     6961 aaggagatac cccgatgacc attactccgg caactcatgc aatttcgata aatcctgcca
     7021 cgggtgaaca actttctgtg ctgccgtggg ctggcgctaa cgatatcgaa aacgcacttc
     7081 agctggcggc agcaggcttt cgcgactggc gcgagacaaa tatagattat cgtgctgaaa
     7141 aactgcgtgg tatcggtaag gctctgcgcg cccgtagcga agaaatggcg caaatgatca
     7201 cccgtgaaat gggcaaacca atcaatcagg cgcgcgctga agtggcgaaa tcggcgaatt
     7261 tgtgtgactg gtatgcagaa catggtccgg caatgctgaa ggcggaacct acgctggtgg
     7321 aaaatcagca ggcagttatt gagtatcgac cgttggggac gattctggcg attatgccgt
     7381 ggaactttcc gttatggcag gtgatgcgtg gcgcggttcc catcattctt gcaggtaacg
     7441 gctacttact taaacatgcg ccgaatgtga tgggctgtgc tcagctcatt gcccaggtgt
     7501 ttaaagatgc gggaatcccg caaggcgtat atggctggct gaatgccgac aacgacggtg
     7561 tcagtcaaat gattaaagat tcgcgcattg ctgctgtcac ggtgaccgga agtgttcgtg
     7621 cgggagcggc tattggcgca caggctggag cggcactgaa aaaatgcgta ctggaactgg
     7681 gcggttcgga tccatttatt gtgcttaacg atgccgatct ggaactggcg gttaaagcgg
     7741 cggtagccgg acgttatcag aataccggac aggtttgtgc agcggcaaaa cgctttatta
     7801 tcgaagaggg aattgcttct gcatttaccg aacgttttgt ggcagctgcg gcagccttga
     7861 aaatgggcga tccccgtgat gaagagaacg ctctcggacc aatggctcgt tttgatttac
     7921 gtgatgagct gcatcatcag gtggagaaaa ccctggcgca gggtgcgcgt ttgttactgg
     7981 gcggggaaaa gatggctggg gcaggtaact actatccgcc aacggttctg gcgaatgtta
     8041 ccccagaaat gaccgcgttt cgggaagaaa tgtttggccc tgttgcggca atcaccgttg
     8101 cgaaagatgc agaacatgcg ctggaactgg ctaatgatag tgagttcggc ctttcagcga
     8161 ccatttttac caccgacgaa acacaggcca gacagatggc ggcacgtctg gaatgcggtg
     8221 gggtgtttat caatggttat tgtgccagcg acgcgcgagt ggcctttggt ggcgtgaaaa
     8281 agagtggctt tggtcgtgag ctttcccatt tcggcttaca cgaattctgt aatatccaga
     8341 cggtgtggaa agaccggatc tgacgcgaca tattcagctc tgatatactc gcaggtcttt
     8401 tcagacctgc ggtccaggag tagaaagtgg cagtcgccat ggataatgca attttagaaa
     8461 acatcttgcg gcaagtgcgg ccgctcattg gtcagggtaa agtcgcggat tatattccgg
     8521 cgctggctac agtagacggt tcccgattgg gtattgctat ctgtaccgtt gacggacagc
     8581 tttttcaggc cggagacgcg caagaacgtt tttccattca gtctatttcc aaagtgctga
     8641 gtctcgttgt cgccatgcgt cattactccg aagaggaaat ctggcaacgc gtcggcaaag
     8701 atccgtctgg atcaccgttc aattctttag tgcaactgga aatggagcag ggtattccgc
     8761 gtaatccgtt tattaatgct ggtgcgctgg tggtctgcga tatgttgcaa gggcgattaa
     8821 gcgcaccacg gcaacgtatg ctggaagtcg tgcgcggctt aagcggtgtg tctgatattt
     8881 catacgatac ggtggtagcg cgttccgaat ttgaacattc tgcgcgaaat gcggctatcg
     8941 cctggctgat gaagtcgttt ggcaatttcc atcatgacgt gacaaccgtt ctgcaaaact
     9001 actttcatta ctgcgctctg aaaatgagct gtgtagagct ggcccggacg tttgtctttc
     9061 tggctaatca ggggaaagct attcatattg atgaacctgt ggtgacgcca atgcaggcgc
     9121 ggcaaattaa cgcgctgatg gcgaccagtg gtatgtacca gaacgcgggg gagtttgcct
     9181 ggcgggtggg gctaccggcg aaatctggcg ttggtggcgg tattgtggcg attgttccgc
     9241 atgaaatggc catcgctgtc tggagtccgg aactggatga tgcaggtaac tcgcttgcgg
     9301 gtatcgccgt ccttgaacaa ttgacgaaac agttagggcg ttcggtttat taatgcagtc
     9361 tctcgatcca ctcttcgcgc gtttatcccg ttcaaaattt cgctctcgct ttcgtctggg
     9421 catgaaagag cgtcagtatt gcctggagaa aggcgcgcca gtcatcgaac aacatgcggc
     9481 ggattttgtc gctaaacgtc ttgctccggc attaccggct aatgacggta agcaaacacc
     9541 catgcgcggg catccggtgt ttatcgctca gcacgccacc gcgacctgct gtcgcggttg
     9601 tctggctaag tggcataaca ttccgcaggg tgtttcgtta agcgaagaac aacaacgtta
     9661 tatcgtggcg gtaatctatc actggctggt tgtacagatg aatcagccat gagaattgcg
     9721 gaaaacgata aaatagcatt cccagggtac ctttatttgc cgccgctgtt agcgaacatg
     9781 ctatccttta tgagaattta cttattacgt tgagataatt gccacccgca attgtatgga
     9841 cagataatta atgcatgtac accccatttc aactttccgt ttgttccagg aaggtcatct
     9901 gctacgtaat agcatcgcta tttttgcgct aaccacgctg ttctatttta ttgttgcaga
     9961 gttacggctg gttcacgaac tttctctttt ctggccgctg aatggcgtaa tggcgggggt
    10021 gtttgcccgc tatgtctggc ttaatcgact gcattactat gcgatcagtt atgtggcgat
    10081 gctggtttat gatgccataa ccaccgaatg gggactggtt tcactggtta tcaatttctc
    10141 caatatgatg tttattgtta ccgtcgcctt actggtcgtg cgggataagc gtctggggaa
    10201 aaataagtat gagccagtaa gtgccttacg gctatttaat tactgtctga ttgccgcatt
    10261 attatgcgct attgtcgggg cgattggttc ggtcagtatt gatagtctgg atttctggcc
    10321 tttgcttgcg gactggttca gtgagcaatt ctcaacgggc gtgttgatcg tgccttgtat
    10381 gctgacgttg gctattcctg gagtgctgcc gcgctttaaa gcagaacaga tgatgcccgc
    10441 catcgcgctt attgtgtcgg ttattgcctc ggtagtcatt ggcggagcgg ggagtctggc
    10501 gttcccgctg cctgcattaa tctggtgtgc agtgcgctat acgccgcagg taacatgtct
    10561 gttgaccttt gtcaccggtg cggtggaaat cgtactggtg gcaaattcgg tgattgatat
    10621 ctcggtcggt tcgccgttct ccattccgga aatgttctcc gcacgtctcg gtattgccac
    10681 gatggcgata tgcccaatta tggtttcttt tagcgtggca gcgatcaatt cgctaatgaa
    10741 gcaagttgcg ctgcgagccg actttgattt tctgactcag gtttactcac ggtccggtct
    10801 ttatgaggcg ctgaaaagtc catcgctgaa acagacacaa catctgacgg tcatgctgct
    10861 tgatatcgac tatttcaaaa gcattaacga taactatgga catgaatgtg gcgataaagt
    10921 gttaagcgtg tttgcccggc atattcagaa gattgtcggt gataaggggc tggtggcgcg
    10981 catgggcggc gaagaatttg ctgttgcagt gccgtcggtg aatcctgtcg atggtctgct
    11041 aatggcggaa aaaatccgta aaggcgttga actgcaacca ttcacctggc aacaaaaaac
    11101 gctttatctc atggtaagta ttggcgtcgg tagtggtcgc gcatcgtacc gaacgctgac
    11161 cgatgatttt aataaattga tggtcgaagc cgatacgtgt ctgtatcgct cgaagaaaga
    11221 tgggcgcaac cgtaccagca ctatgcgtta cggtgaggaa gttgtctgac atctttattc
    11281 attccgcgcg atttgaatgc aatgtgttct accactttat gatccaggaa aaggcgtatt
    11341 tcctcgatta aaccatgatc cgcgccacac ttttctcata aaactgctca ttaatcatca
    11401 ggagttgatc aaaacagggg ttcggcgtat taaattttgc taacctgtcg caccaattca
    11461 agcgggttgt atgactaatc agaagggaac ccattgtgaa aacactaaat cgtcgcgata
    11521 ttcccggtgc acagtatcca gaacgtatca ttcagtttgg tgaaggtaac ttcctgcgcg
    11581 cctttgttga ctggcaaatc gatctcctga atgagcacac cgatctgaat tctggcgtgg
    11641 tcgttgttcg tccgattgaa acttcattcc cgccgtcact gagcacgcag gatggtctgt
    11701 acaccaccat tatccgtggc ctgaatgaga aggggtgaag tggtcaacaa aaactggcca
    11761 ccgagttaga gtttttccag tatcg
//
LOCUS       DAJVSY010000133        11775 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.133, whole genome shotgun sequence.
ACCESSION   DAJVSY010000133 DAJVSY010000000
VERSION     DAJVSY010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11775)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11775)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11775
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.133"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(11..661)
                     /gene="hxpA"
                     /locus_tag="OQQ19_003188"
     CDS             complement(11..661)
                     /gene="hxpA"
                     /locus_tag="OQQ19_003188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpA"
                     /protein_id="HCS1804718.1"
                     /translation="MRCKGFLFDLDGTLVDSLPAVERAWSNWARRHGLAPEEVLAFIH
                     GKQAITSLRHFMAGKSEADIAAEFTCLEHIEATETEGITALPGAIALLNHLNKAGIPW
                     AIVTSGSMPVARARHKIAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVV
                     AEDAPAGVLSGLAAGCHVIAVNAPADTPRLNEVDLVLHSLEQITVTKQLNGDVIIQ"
     gene            complement(672..1166)
                     /locus_tag="OQQ19_003189"
     CDS             complement(672..1166)
                     /locus_tag="OQQ19_003189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007371080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfbU family protein"
                     /protein_id="HCS1804719.1"
                     /translation="MEMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERGYGLQM
                     RELDREFGELKEETCRTIIDIMEMYHALHVSWSNLQDQQSIDERRVTFLGFDAATEAR
                     YLGYVRFMVNVEGRYTHFDAGTHGFNAQTPMWEKYQRMLNVWHACLRQYHLSANEINQ
                     IINA"
     gene            complement(1250..1705)
                     /locus_tag="OQQ19_003190"
     CDS             complement(1250..1705)
                     /locus_tag="OQQ19_003190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF412 domain-containing protein"
                     /protein_id="HCS1804720.1"
                     /translation="MSTPDNRSVNFFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMT
                     RYAIRFMPPIAVFTLCWQIALGGQLGPAVATALFALSLPMQGLWWLGKRSVTPLPPAI
                     LNWFYEVRGKLQESGQVLAPVEGKPDYQALADTLKRAFKQLDKTFLDDL"
     gene            2043..3245
                     /gene="ackA"
                     /locus_tag="OQQ19_003191"
     CDS             2043..3245
                     /gene="ackA"
                     /locus_tag="OQQ19_003191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HCS1804721.1"
                     /translation="MSSKLVLVLNCGSSSLKFAIIDAVNGEEYLSGLAECFHLPEARI
                     KWKMDGNKQEAALGAGAAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSS
                     VVIDESVIQGIKDAASFAPLHNPAHLIGIEEALKSFPQLKDKNVAVFDTAFHQTMPEE
                     SYLYALPYNLYKEHGIRRYGAHGTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVS
                     AIRNGKCVDTSMGLTPLEGLVMGTRSGDIDPAIIFHLHDTLGMSVDAINKLLTKESGL
                     LGLTEVTSDCRYVEDNYATKEDAKRAMDVYCHRLAKYIGAYTALMDGRLDAVVFTGGI
                     GENAAMVRELSLGKLGVLGFEVDHERNLAARFGKSGFINKEGTRPAVVIPTNEELVIA
                     QDASRLTA"
     gene            3320..5464
                     /gene="pta"
                     /locus_tag="OQQ19_003192"
     CDS             3320..5464
                     /gene="pta"
                     /locus_tag="OQQ19_003192"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HCS1804722.1"
                     /translation="MSRIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPR
                     TGGDAPDQTTTIVRANSSTTTAAEPLKMSYVEGLLSSNQKDVLMEEIVANYHANTKDA
                     EVVLVEGLVPTRKHQFAQSLNYEIAKTLNAEIVFVMSQGTDTPEQLKERIELTRNSFG
                     GAKNTNITGVIVNKLNAPVDEQGRTRPDLSEIFDDSSKAKVNNVDPAKLQESSPLPVL
                     GAVPWSFDLIATRAIDMARHLNATIINEGDINTRRVKSVTFCARSIPHMLEHFRAGSL
                     LVTSADRPDVLVAACLAAMNGVEIGALLLTGGYEMDARISKLCERAFATGLPVFMVNT
                     NTWQTSLSLQSFNQEVPVDDHERIEKVQEYVANYINADWIESLTATSERSRRLSPPAF
                     RYQLTELARKAGKRIVLPEGDEPRTVKAAAICAERGIATCVLLGNPAEINRVAASQGV
                     ELGAGIEIVDPEVVRESYVGRLVELRKNKGMTETVAREQLEDNVVLGTLMLEQDEVDG
                     LVSGAVHTTANTIRPPLQLIKTAPGSSLVSSVFFMLLPEQVYVYGDCAINPDPTAEQL
                     AEIAIQSADSAAAFGIEPRVAMLSYSTGTSGAGSDVEKVREATRLAQEKRPDLMIDGP
                     LQYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTGNTTYKAVQRSADLISIGPMLQG
                     MRKPVNDLSRGALVDDIVYTIALTAIQSAQQQ"
     gene            5654..7174
                     /gene="yfcC"
                     /locus_tag="OQQ19_003193"
     CDS             5654..7174
                     /gene="yfcC"
                     /locus_tag="OQQ19_003193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416801.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative basic amino acid antiporter YfcC"
                     /protein_id="HCS1804723.1"
                     /translation="MSAITESKPTRRWAMPDTLVIIFFVAILTSLATWVVPVGMFDSQ
                     EVQYQVDGQTKTRKVVDPHSFRILTNEAGEPEYHRVQLFTTGDERPGLMNFPFEGLTS
                     GSKYGTAVGIIMFMLVIGGAFGIVMRTGTIDNGILALIRHTRGNEILFIPALFILFSL
                     GGAVFGMGEEAVAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQ
                     GIAGVPVLSGSGLRIVVWVIATMIGLIFTMVYASRVKKNPLLSRVHESDRFFREKQAD
                     VEQRPFTFGDWLVLIVLTAVMVWVIWGVIVNAWFIPEIASQFFTMGLVIGIIGVVFRL
                     NGMTVNTMASSFTEGARMMIAPALLVGFAKGILLLVGNGEAGDASVLNTILNSIANAI
                     SGLDNAVAAWFMLLFQAVFNFFVTSGSGQAALTMPLLAPLGDLVGVNRQITVLAFQFG
                     DGFSHIIYPTSASLMATLGVCRVDFRNWLKVGATLLGLLFIMSSVVVIGAQLMGYH"
     gene            complement(7207..7749)
                     /gene="yfcD"
                     /locus_tag="OQQ19_003194"
     CDS             complement(7207..7749)
                     /gene="yfcD"
                     /locus_tag="OQQ19_003194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase YfcD"
                     /protein_id="HCS1804724.1"
                     /translation="MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVV
                     HDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAE
                     HGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKA
                     LALWMKRNAKNEAVETETAE"
     gene            complement(7807..8358)
                     /gene="yfcE"
                     /locus_tag="OQQ19_003195"
     CDS             complement(7807..8358)
                     /gene="yfcE"
                     /locus_tag="OQQ19_003195"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311211.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase"
                     /protein_id="HCS1804725.1"
                     /translation="MKLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRN
                     ALPEGYAPAKVAERLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFL
                     THGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNPASYGML
                     DNDVLSVIALNDQSIIAQVAINP"
     gene            complement(8414..9046)
                     /gene="yfcF"
                     /locus_tag="OQQ19_003196"
     CDS             complement(8414..9046)
                     /gene="yfcF"
                     /locus_tag="OQQ19_003196"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase"
                     /protein_id="HCS1804726.1"
                     /translation="MSKPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGE
                     HLQPTWQGYGQTRRVPLLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARA
                     RQIQAWLRSDLMPIREERPTDVVFAGAKKAPLTAEGKASVAMAEHLLALGQPNLFGEW
                     CIADTDLALMINRLVLHGDEVPERLVDYATFQWQRASVQRFIALSAKQSG"
     gene            9182..9829
                     /gene="yfcG"
                     /locus_tag="OQQ19_003197"
     CDS             9182..9829
                     /gene="yfcG"
                     /locus_tag="OQQ19_003197"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GSH-dependent disulfide bond oxidoreductase"
                     /protein_id="HCS1804727.1"
                     /translation="MIDLYFAPTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFL
                     RISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTGLFLSHETRERAATLQWLF
                     WQVGELGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYS
                     IADIACWPWVNAWTRQRIDLAMYPAVKNWHERIRSRPATGQALLKAQLGDERSDS"
     gene            9886..10248
                     /gene="folX"
                     /locus_tag="OQQ19_003198"
     CDS             9886..10248
                     /gene="folX"
                     /locus_tag="OQQ19_003198"
                     /EC_number="5.1.99.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate 2'-epimerase"
                     /protein_id="HCS1804728.1"
                     /translation="MAQPAAIIRIKNLRLRTFIGIKEEEINNRQDIVINVTIHYPADK
                     ARTSEDINDALNYRTVTKNIIQHVENNRFSLLEKLTQDVLDIAREHHWVTYAEVEIDK
                     LHALRYADSVSMTLSWQR"
     gene            10269..11162
                     /locus_tag="OQQ19_003199"
     CDS             10269..11162
                     /locus_tag="OQQ19_003199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HCS1804729.1"
                     /translation="MNIVITGGTGLIGRHLIPRLLELGHQITVVTRNPQKASSVLGPR
                     VTLWQGLADQSNLNGVDAVINLAGEPIADKRWTHEQKERLCQSRWNITQKLVDLINAS
                     DTPPSVLISGSATGYYGDLGEVVVTEEEPPHNEFTHKLCARWEEIACRAQSDKTRVCL
                     LRTGVVLAPDGGILGKMLPPFRLGLGGPIDSGRQYLAWIHIDDMVNGILWLLDNELRG
                     PFNMVSPYPVRNEQFAHALGHALHRPAILRVPATAIRLLMGESSVLVLGGQRALPKRL
                     EEAGFAFRWYDLEEALADVVR"
     gene            complement(11210..>11775)
                     /gene="rpnB"
                     /locus_tag="OQQ19_003200"
     CDS             complement(11210..>11775)
                     /gene="rpnB"
                     /locus_tag="OQQ19_003200"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnB"
                     /protein_id="HCS1804730.1"
                     /translation="GYKELPLVIPMLFYHGCRSPYPYSLCWLDEFAEPAIARKIYSSA
                     FPLVDITVVPDDEIMQHRKMALLELIQKHIRQRDLLGLVDQIVSLLVTGNTNDRQLKA
                     LFNYVLQTGDAQRFRAFIGEIAERAPQEKEKLMTIADRLREEGAMQGKHEEALRIAQE
                     MLDRGLDRELVMMVTRLSPDDLIAQSH"
BASE COUNT         2818 a         3122 c         2944 g         2891 t
ORIGIN      
        1 atcaggtgtt tcactgaata ataacatcgc catttagctg tttggtcaca gtaatttgct
       61 ccagactgtg gaggaccaaa tcgacctcat tcaggcgcgg ggtatctgcc ggagcgttaa
      121 ccgcaatgac atggcaaccc gccgccaggc cagaaagcac gccagcggga gcatcttccg
      181 ccaccacaca ctcctgcggc gcaagcccca gcagctgcgc acctaacaga tacgcatcag
      241 gttctggttt tccgcgcttc actcgctcag cggttacaaa cacctctggt gcgggaagcc
      301 cagctatttt atggcgcgct cgcgctaccg gcatggagcc agaagtcaca atggcccacg
      361 gaatacctgc tttattcaaa tgattgagta aggcgattgc ccccggaagc gcggtaatac
      421 cttcggtttc cgtggcctcg atgtgctcca gacacgtaaa ctcggcggca atatcagcct
      481 cggatttgcc cgccataaaa tggcgcaaag aggtgatcgc ctgtttaccg tgaatgaaag
      541 ccagcacctc ttccggcgct aacccatgac gtctggccca gttgctccac gcccgttcta
      601 ccgcaggcag ggaatccacc agcgttccat caagatcaaa cagaaaacct ttgcaccgca
      661 cgcgggcctc ctcaggcgtt gataatttga ttaatttcgt tggcgctcaa atggtactga
      721 cgcaggcagg catgccacac attaagcatg cgctgatatt tttcccacat tggcgtctgg
      781 gcgttaaaac catgagtccc agcgtcaaaa tgggtatagc gcccttccac attaaccata
      841 aagcggacat aaccgaggta acgtgcttca gtggcggcgt caaagccgag gaaggtgaca
      901 cgacgttcat cgatggattg ctggtcctgc aaattagacc aggaaacatg caacgcatga
      961 tacatctcca taatgtcgat gatagtgcgg caggtttctt ctttcagctc gccaaactcg
     1021 cgatccaatt cacgcatctg taatccgtaa ccacgctcaa taattgtttg caggcgacgg
     1081 taacgttcag catttgccgg atcgagcata gtcatcatct tgtactgatt agacaaaata
     1141 agacgttgcg cgttggtcat ttccattgtt gactcctgta tcactctact acggtgaaaa
     1201 aaaaagaagg ctgagtatgc cttcttttat atgcgtaatc aggggtcaat tacaaatcat
     1261 caaggaaagt tttatccagt tgtttgaagg cgcgcttaag cgtgtcagct aatgcctggt
     1321 aatcaggctt gccttcaacg ggtgccaaca cctgtccaga ctcctgcaat ttaccgcgaa
     1381 cttcataaaa ccagttgagg atagcagggg gtaatggcgt tacagaacgc ttgcccagcc
     1441 accataatcc ctgcatgggt aaacttaagg cgaacagcgc agtggcaact gccggcccaa
     1501 gctgaccgcc cagggcaatc tgccagcaga gagtaaatac ggcgatcggc ggcataaaac
     1561 ggatcgcata acgcgtcatc ttgataacgc gattttcgac aaagaccggg gcaaggcgtt
     1621 tttccagcgg ccacgtcttt gagtaatgct gtccccggcg aaacaagcta aaaaaattaa
     1681 cagaacgatt atccggcgtt gacatgcttc acctcaactt cacatataaa gattcaaaaa
     1741 tttgtgcaaa ttcacaactc agcgggacaa cattcaaaac attttgtctt ccatacccac
     1801 tatcaggtat cctttagcag cctgaaggcc taagtagtac atattcattg agtcgtcaaa
     1861 ttcatataca ttatgccatt ggctgaaaat tacgcaaaat ggcatagact caagatattt
     1921 cttccatcat gcaaaaaaaa tttgcagtgc atgatgttaa tcataaatgt cggtgtcatc
     1981 atgcgctacg ctctatggct ccctgacgtt tttttagcca cgtatcaatt ataggtactt
     2041 ccatgtcgag taagttagta ctggttctga actgcggtag ttcttcactg aaatttgcca
     2101 tcatcgatgc agtaaatggt gaagagtacc tttctggttt agccgaatgt ttccacctgc
     2161 ccgaagcacg tatcaaatgg aaaatggacg gcaataaaca ggaagcggct ttaggtgcag
     2221 gcgccgctca cagcgaagcg ctcaacttta tcgttaatac tattctggca caaaaaccag
     2281 aactgtctgc gcagctgact gctatcggtc accgtatcgt acacggcggc gaaaagtata
     2341 ccagctccgt agtgatcgat gagtctgtta ttcagggtat caaagatgca gcttcttttg
     2401 caccgctaca caacccggct cacctgatcg gtatcgaaga agctctgaaa tctttcccac
     2461 agctgaaaga caaaaacgtt gctgtatttg acaccgcgtt ccaccagact atgccggaag
     2521 agtcttacct ctacgccctg ccttacaacc tgtacaaaga gcacggcatc cgtcgttacg
     2581 gcgcgcacgg caccagccac ttctatgtaa cccaggaagc ggcaaaaatg ctgaacaaac
     2641 cggtagaaga actgaacatc atcacctgcc acctgggcaa cggtggttcc gtttctgcta
     2701 tccgcaacgg taaatgcgtt gacacctcta tgggcctgac cccgctggaa ggtctggtca
     2761 tgggtacccg ttctggtgat atcgatccgg cgatcatctt ccacctgcac gacaccctgg
     2821 gcatgagcgt tgacgcaatc aacaaactgc tgaccaaaga gtctggcctg ctgggtctga
     2881 ccgaagtgac cagcgactgc cgctatgttg aagacaacta cgcgacgaaa gaagacgcga
     2941 agcgcgcaat ggacgtttac tgccaccgcc tggcgaaata catcggtgcc tacactgcgc
     3001 tgatggatgg tcgtctggac gctgttgtat tcactggtgg tatcggtgaa aatgccgcga
     3061 tggttcgtga actgtctctg ggcaaactgg gcgtgctggg ctttgaagtt gatcatgaac
     3121 gcaacctggc tgcacgtttc ggcaaatctg gtttcatcaa caaagaaggt acccgtcctg
     3181 cggtggttat cccaaccaac gaagaactgg ttatcgcgca agacgcgagc cgcctgactg
     3241 cctgatttca caccgccagc tcagctggcg gtgctgtttt gtaacccgcc aaatcggcgg
     3301 taacgaaaga ggataaaccg tgtcccgtat tattatgctg atccctaccg gaaccagcgt
     3361 cggtctgacc agcgtcagcc ttggcgtgat ccgtgcaatg gaacgcaaag gcgttcgtct
     3421 gagcgttttc aaacctatcg ctcagccgcg taccggtggc gatgcgcccg atcagactac
     3481 gactatcgtg cgtgcgaact cttccaccac gacggccgct gaaccgctga aaatgagcta
     3541 cgttgaaggt ctgctttcca gcaatcagaa agatgtgctg atggaagaga tcgtcgcaaa
     3601 ctaccacgct aacaccaaag acgctgaagt cgttctggtt gaaggtctgg tcccgacacg
     3661 taagcaccag tttgcccagt ctctgaacta cgaaatcgct aaaacgctga atgcggaaat
     3721 cgtcttcgtt atgtctcagg gcactgacac cccggaacag ctgaaagagc gtatcgaact
     3781 gacccgcaac agcttcggcg gtgccaaaaa caccaacatc accggcgtta tcgttaacaa
     3841 actgaacgca ccggttgatg aacagggtcg tactcgcccg gatctgtccg agattttcga
     3901 cgactcttcc aaagctaaag taaacaatgt tgatccggcg aagctgcaag aatccagccc
     3961 gctgccggtt ctcggcgctg tgccgtggag ctttgacctg atcgcgactc gtgcgatcga
     4021 tatggctcgc cacctgaatg cgaccatcat caacgaaggc gacatcaata ctcgccgcgt
     4081 taaatccgtc actttctgcg cacgcagcat tccgcacatg ctggagcact tccgtgccgg
     4141 ttctctgctg gtgacttccg cagaccgtcc tgacgtgctg gtcgccgctt gcctggcagc
     4201 catgaacggc gtagaaatcg gtgccctgct gctgactggc ggctacgaaa tggacgcgcg
     4261 catttctaaa ctgtgcgaac gtgctttcgc taccggcctg ccggtattta tggtgaacac
     4321 caacacctgg cagacctctc tgagcctgca gagcttcaac caggaagttc cggttgacga
     4381 tcacgaacgt atcgagaaag ttcaggaata cgttgctaac tacatcaacg ctgactggat
     4441 cgaatctctg actgccactt ctgagcgcag ccgtcgtctg tctccgcctg cgttccgtta
     4501 tcagctgact gaacttgcgc gcaaagcggg caaacgtatc gtactgccgg aaggtgacga
     4561 accgcgtacc gttaaagcag ccgctatctg tgctgaacgt ggtatcgcaa cttgcgtact
     4621 gctgggtaat ccggcagaga tcaaccgtgt tgcagcgtct cagggtgtag aactgggtgc
     4681 agggattgaa atcgttgatc cagaagtggt tcgcgaaagc tatgttggtc gtctggtcga
     4741 actgcgtaag aacaaaggca tgaccgaaac cgttgcccgc gaacagctgg aagacaacgt
     4801 ggtgctcggt acgctgatgc tggaacagga tgaagttgat ggtctggttt ccggtgctgt
     4861 tcacactacc gcaaacacca tccgtccgcc gctgcagctg atcaaaactg caccgggcag
     4921 ctccctggta tcttccgtgt tcttcatgct gctgccggaa caggtttacg tttacggtga
     4981 ctgtgcgatc aacccggatc cgaccgctga acagctggca gaaatcgcga ttcagtccgc
     5041 tgattccgct gcggccttcg gtatcgaacc gcgcgttgct atgctctcct actccaccgg
     5101 tacttctggt gcaggtagcg acgtagaaaa agttcgcgaa gcaactcgtc tggcgcagga
     5161 aaaacgtcct gacctgatga tcgacggtcc gctgcagtac gacgctgcgg taatggctga
     5221 cgttgcgaaa tccaaagcgc cgaactctcc ggttgcaggt cgcgctaccg tgtttatctt
     5281 cccggatctg aacaccggta acaccaccta caaagcggta cagcgttctg ccgacctgat
     5341 ctccatcggg ccgatgctgc agggtatgcg caagccggtt aacgacctgt cccgtggcgc
     5401 actggttgac gatatcgtct acaccatcgc gctgactgcg attcagtctg cacagcagca
     5461 gtaatctcgt catcatccgc agctttgcgc tgcggatatc tgaaccggaa ataatcacta
     5521 tttccggttt tttattctct taatctgcat taatcctttc tgattatctt gcttaactgc
     5581 gctgcatcaa tgaattgcgc catttcactt tgcatactta ccactttgtt ttgtgcaagg
     5641 gaatatttgc gctatgtccg caatcactga atccaaacca acaagaagat gggcaatgcc
     5701 cgatacgttg gtgattatct tttttgttgc tattttaacc agccttgcca cctgggtagt
     5761 tccggtgggg atgtttgaca gtcaggaagt gcagtatcag gttgatggtc aaacaaaaac
     5821 acgcaaagtc gtagatccac actcatttcg cattctgact aacgaagcag gcgaacctga
     5881 gtatcaccgc gtacagctgt tcacgacggg cgatgaacgc ccgggcctga tgaacttccc
     5941 gtttgaagga ttaacctcag gatcgaaata cgggacagct gttggcatca tcatgtttat
     6001 gctggtgatt ggcggcgcgt ttggcattgt gatgcgtaca ggaaccattg ataacggtat
     6061 cctggcgctt attcgccata cccgcgggaa tgaaattctc tttattcctg cgctgtttat
     6121 tctgttttca cttggcggcg cggtatttgg tatgggagaa gaggccgtcg cctttgccat
     6181 tatcatcgca ccgctaatgg tccggctggg ctatgacagt attaccaccg tcctggtgac
     6241 ctatattgcc acgcaaatcg gttttgccag ttcgtggatg aacccgtttt gtgtggtcgt
     6301 tgctcagggg attgccggcg ttccggtgct ttctggctcc gggttgcgca tcgtggtgtg
     6361 ggttatcgcc actatgattg gcctgatctt taccatggtg tacgcctcac gagtgaaaaa
     6421 gaatcctctt ctgtcacgcg tgcatgagtc cgaccgcttc tttcgtgaaa agcaggcgga
     6481 tgttgaacaa cgtccgttta cctttggtga ctggctggta ttgattgtcc tgaccgccgt
     6541 aatggtctgg gtgatttggg gcgtgatcgt taatgcctgg tttattccag aaattgccag
     6601 ccagttcttc accatgggtc tggtgattgg catcatcggc gttgttttcc gccttaacgg
     6661 catgacggtt aataccatgg cttcatcctt taccgaaggg gcgcgaatga tgatcgcccc
     6721 tgccctgctg gtgggtttcg ccaaagggat tttgctgctg gtcggtaatg gtgaagcggg
     6781 tgatgccagc gtgttaaata ccatcctcaa cagcattgcc aatgccatta gcggtctgga
     6841 caacgcggtc gcggcctggt ttatgttgct cttccaggcg gtatttaatt tcttcgtgac
     6901 gtccggttct ggtcaggcgg cgttaaccat gccgttactg gcaccgcttg gcgatctggt
     6961 cggtgttaac cgtcagatta ccgtgctggc attccagttt ggtgatggct tcagtcacat
     7021 catttaccca acctcagctt cgttaatggc aactctcggt gtgtgcaggg tggacttccg
     7081 taactggctg aaggtgggcg cgaccctact tggactgctg tttattatgt ccagcgtcgt
     7141 agtgatcggc gctcagttga tgggctacca ctaaaaatgt taagagccgc aattgcggct
     7201 cttttttcat tctgccgttt cagtctctac ggcttcattt ttggcattgc gcttcatcca
     7261 caacgccagc gctttcagcg agtctggagt gaactcatcg cagcgtgcgg tgatttcttc
     7321 cggcgtcagc cagcaaactt cactgacttc atcttcctgt agggcgaagg gaccgtgaga
     7381 gacgcagctg aacaacgcgc cccagacacg gcaattttta tcttcgaaat agaactgccc
     7441 gtgctcggca aaggggacac cggcaatgcc caactcttct tccgcttcgc gacgcgcgga
     7501 ttccagcagt tgctcatcgg cctgaaccac accgcctgcg gtcgcatcta acatgccggg
     7561 taaaaagtct tttgtctcgg tacgacgctg gaccagaatt ttgcccatgc catcatgcac
     7621 gacgatgtaa gttgcacgat gacgcagaca ctgtgcccgc atttgttccc ggctggcttg
     7681 tgcaatgact tcgttctctt cattgacaat atccacccat tcagtacttg ccaaacgacg
     7741 ctgttccatt atcaggaaac cttctttttc tggcgctctt acggcgcatt ttgagttgtg
     7801 ggtaaattac ggattaatcg cgacctgcgc aatgatactt tgatcattga gtgcgattac
     7861 actaagtacg tcattatcca gcatgccata actcgccgga ttaccgcctt tcggaatact
     7921 caccgagccg gggttgaagt ggaaaatctc cccccgctgt tctgccactg gcagatgggt
     7981 atgaccgtac accagcacat cgttctggtt taaagcaggt agattttccg ggccaaaaag
     8041 atgaccatgc gtcaaaaaca gacgttgttt ttccagtaat acctgttgcc acggcgcggt
     8101 tatcgggaaa tgcagcagca tttgatccac ttcgctgtcg cagttgccgc gcacagcgat
     8161 aaccttatgt gccacttcat taagccgttc agcgactttg gctggcgcgt aaccctccgg
     8221 taaagcatta cgcgggccgt gattcaacac gtcgccaagg atcaccagcc actgggcacc
     8281 gctttgggca aacaactcca gaacacgttc cgtcgccggt aacgacccat gaatgtccga
     8341 tgcaaacatc agtttcatca ctcactcctc gtcgaaaaaa cgtaagctat gatactggat
     8401 tctgtcgttg ctatcagcca gattgcttcg ccgaaagtgc aataaaacgc tggacagacg
     8461 ctcgctgcca ctggaatgtc gcataatcca ccaggcgttc tggcacctca tcgccatgta
     8521 gtaccaggcg gttaatcatt agcgccagat cagtatcagc aatgcaccat tcaccaaata
     8581 aattcggctg acccagtgct aacaaatgtt ctgccatcgc gacactggct tttccctcgg
     8641 ccgttagtgg cgcttttttc gcccccgcaa agacaacatc cgtcggacgc tcttcgcgga
     8701 tgggcatcag atcgctgcgc agccaggcct gaatctgtcg tgcacgcgca cgattttcta
     8761 aatcaagcgg ataaatacgt tcccaggtcg gtggcgcaaa tcgatcttcc agatactccg
     8821 caatggcaga agattcactc aactcaaaat catcgatttg taataacggc acacggcgtg
     8881 tctgaccgta accttgccac gtcggctgca aatgttcacc gctgtcgagg tcgatggtct
     8941 tgatatgaaa cgacaggcct ttttcctgca acgccaccca agcggataac acataagggg
     9001 agaaaaagtg ggcatctgac caaagcgtga tagcgggttt actcattatg tcctcggcaa
     9061 taaaggaggc tggctatcaa actatagagc ctttttgtca ctgtcacgtg acgaatactc
     9121 acgtaagtcg ccgcgctttc tatacttgtg gtgttcagat gattaaacaa ccggagctgc
     9181 aatgatcgat ctctatttcg ccccgacacc caatggtcac aaaattacgc tgtttctcga
     9241 agaagcagag cttgattatc gcttgattaa ggtagacctg gggaaaggcg gtcagtttcg
     9301 tccggaattt ttgcgcattt cgcccaacaa caaaattccg gcaattgttg atcattctcc
     9361 tgccgatggc ggcgaaccgc taagcctctt tgaatctggt gccattttgt tgtatctggc
     9421 tgagaaaacg gggctctttt tgagtcatga aacgcgtgaa cgcgccgcca cattacagtg
     9481 gttattctgg caggtaggcg aactggggcc gatgcttggg caaaatcatc attttaatca
     9541 cgcagccccc caaaccattc cttacgctat tgaacgttat caggttgaaa ctcagcgtct
     9601 ttaccatgta ctaaacaagc ggctggaaaa ctcgccctgg ctgggaggcg agaactacag
     9661 cattgcggat attgcctgct ggccgtgggt taatgcctgg actcgccagc gaattgacct
     9721 cgcaatgtat ccggcagtca agaactggca tgagcggatc cgttcgcgcc ctgccaccgg
     9781 gcaggcactg ctaaaagcac aactcggtga tgagcgttcg gatagttaac agaaacaggt
     9841 tctcgtgtat tatttcatcc taagtaaaac aacggagaac ctgcaatggc acaacctgcc
     9901 gctattattc gtataaagaa ccttcgttta cgtacgttta tcggaattaa ggaagaagaa
     9961 attaacaacc gtcaggatat tgttatcaat gtgacgatcc actaccccgc cgataaagcg
    10021 cgcactagcg aagatatcaa cgatgcgctg aattatcgca ccgtaacgaa aaacattatt
    10081 cagcatgtag agaataaccg tttctctttg ttggaaaaat taactcagga tgtgctcgat
    10141 atcgcacgtg aacatcactg ggtgacgtat gctgaagtgg agatcgataa actgcacgcg
    10201 ctgcgctacg ccgattcggt atccatgacc ttaagctggc agcgttaacc gccatatcgg
    10261 gaggctgcat gaacatagtg atcaccggag ggacgggatt aattggtcgc catttgattc
    10321 cgcgtttgct ggagctgggc catcaaatca cggtagtgac gcgtaaccca cagaaagcca
    10381 gttccgttct cggccctcgg gtgacgctat ggcaagggct agccgatcaa agcaacctca
    10441 acggcgttga tgcggtaatc aacctggccg gagaaccgat tgctgataaa cgctggactc
    10501 acgagcaaaa agagcgtctc tgccaaagcc gctggaatat cacgcaaaaa ctggtcgatt
    10561 tgattaatgc cagcgacacg ccgccgtcgg tactcatttc cggctcggca acgggctatt
    10621 atggcgactt aggtgaagtg gtggttaccg aagaggaacc gccgcataac gaatttactc
    10681 ataaactctg cgcccgctgg gaagagattg cctgccgggc gcaaagtgac aaaacgcgag
    10741 tgtgcctgct gcgaaccggc gtggtactgg caccggacgg cggtattctc ggtaaaatgc
    10801 tgccaccgtt tcgtcttggc ctgggcgggc cgattgactc tggtcggcag tatctggcct
    10861 ggattcatat tgatgatatg gtcaacggta ttctctggct gctggataac gagctccgcg
    10921 ggccatttaa tatggtttcg ccctacccgg tacgcaatga acaatttgcc catgcgctcg
    10981 gtcacgcgct gcatcgcccg gccattttgc gcgtccccgc gaccgccatt cgactgttaa
    11041 tgggcgaatc ttcagtactg gtattaggtg gacaacgcgc gctgcctaaa cggctggaag
    11101 aagcgggttt tgcgtttcgc tggtacgatt tagaagaggc gctggcggat gtcgttcgct
    11161 gatgtggttt acagcaaaca tccgccagtt aactcccggt gttacaggat tagtggcttt
    11221 gcgcgataag atcgtctggt gaaagtcggg tcaccatcat aactaactct ctgtctaaac
    11281 ctctatccag catctcctga gcaatacgca gggcttcttc gtgtttgccc tgcattgcgc
    11341 cttcttcacg taatctgtca gcaatggtca tcagtttctc cttttcttgt ggtgcgcgtt
    11401 ccgctatctc accaataaat gcacgaaaac gctgggcatc ccctgtttgt aatacgtaat
    11461 taaacagggc ttttagctgt ctgtcattag tgttccctgt aactagcagc gaaacaattt
    11521 ggtcgactaa tcccaacaga tcgcgctgac gaatatgttt ctgaattaac tccaacagcg
    11581 ccattttgcg gtgttgcata atctcgtcat ccggcaccac ggtaatatcc accaacggaa
    11641 acgctgatga atatattttg cgggctatag caggctcggc aaattcatca agccagcaga
    11701 gtgaataagg ataaggactt ctgcaaccat gataaaacag catcgggatc accaatggaa
    11761 gctctttata gcccg
//
LOCUS       DAJVSY010000134        11755 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.134, whole genome shotgun sequence.
ACCESSION   DAJVSY010000134 DAJVSY010000000
VERSION     DAJVSY010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11755
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.134"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(67..714)
                     /gene="ychE"
                     /locus_tag="OQQ19_003201"
     CDS             complement(67..714)
                     /gene="ychE"
                     /locus_tag="OQQ19_003201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter YchE"
                     /protein_id="HCS1804731.1"
                     /translation="MIQTFFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTAAARN
                     KTNLTANLSVAIILWISLFLGDTILQLFGISIDSFRIAGGILVVTIAMSMISGKLGED
                     KQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSISYLFGFFVAIALF
                     ALCCWGLFRMAPWLVRVLRQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN"
     gene            1192..3867
                     /gene="adhE"
                     /locus_tag="OQQ19_003202"
                     /gene_synonym="adhC"
     CDS             1192..3867
                     /gene="adhE"
                     /locus_tag="OQQ19_003202"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HCS1804732.1"
                     /translation="MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAAD
                     ARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGILSEDDTFGTITIAE
                     PIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKDATNKAADIVLQAAIAA
                     GAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTP
                     VVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFATHGGYLLQG
                     KELKAVQDVILKNGALNAAIVGQPAYKIAELAGFSVPENTKILIGEVTVVDESEPFAH
                     EKLSPTLAMYRAKDFEDAVEKAEKLVAMGGIGHTSCLYTDQDNQPARVSYFGQKMKTA
                     RILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAEN
                     MLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGV
                     ETEVFFEVEADPTLSIVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHF
                     EELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDDATGQKYPLAD
                     YALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHAMEAYVSVLASEFSDGQALQALKLL
                     KEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLA
                     NALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKL
                     LAWLETLKAELGIPKSIREAGVQEADFLANVDKLSEDAFDDQCTGANPRYPLISELKQ
                     ILLDTYYGRDYVEGETAAKKEAAPAKAEKKAKKSA"
     gene            3991..4887
                     /locus_tag="OQQ19_003203"
                     /pseudo
     CDS             3991..4887
                     /locus_tag="OQQ19_003203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904641.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
     gene            complement(5169..5786)
                     /gene="tdk"
                     /locus_tag="OQQ19_003204"
     CDS             complement(5169..5786)
                     /gene="tdk"
                     /locus_tag="OQQ19_003204"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HCS1804733.1"
                     /translation="MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRF
                     GAGKVSSRIGLSSPAKLFNQNSSLFDEIRAEHEQQAIHCVLVDECQFLTRQQVYELSE
                     VVDQLDIPVLCYGLRTDFRGELFIGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQA
                     GRPYNEGEQVVIGGNERYVSVCRKHYKEALQVGSLTAIQERHRHD"
     gene            6391..6804
                     /gene="hns"
                     /locus_tag="OQQ19_003205"
     CDS             6391..6804
                     /gene="hns"
                     /locus_tag="OQQ19_003205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator H-NS"
                     /protein_id="HCS1804734.1"
                     /translation="MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEE
                     SAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDE
                     NGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ"
     gene            complement(6948..7856)
                     /gene="galU"
                     /locus_tag="OQQ19_003206"
     CDS             complement(6948..7856)
                     /gene="galU"
                     /locus_tag="OQQ19_003206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HCS1804735.1"
                     /translation="MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQY
                     VVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHV
                     TIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFD
                     ETGHSQIMVEQVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRY
                     VLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAF
                     VEYGIRHNTLGTEFKAWLEEEMGIKK"
     gene            complement(8058..9071)
                     /gene="rssB"
                     /locus_tag="OQQ19_003207"
     CDS             complement(8058..9071)
                     /gene="rssB"
                     /locus_tag="OQQ19_003207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator RssB"
                     /protein_id="HCS1804736.1"
                     /translation="MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDAL
                     ELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGV
                     EDVLLKPVKDLNRLREMVFACLYPSMFNSRVEEEERLFRDWDATVDNPAAAAKLLQEL
                     QPPVQQVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALL
                     LRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLI
                     LVSAGLNATLNTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLML
                     SAE"
     gene            complement(9163..10068)
                     /gene="rssA"
                     /locus_tag="OQQ19_003208"
     CDS             complement(9163..10068)
                     /gene="rssA"
                     /locus_tag="OQQ19_003208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase RssA"
                     /protein_id="HCS1804737.1"
                     /translation="MRKIKIGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGS
                     LVGAAYACDRLSALEDWVTSFSYWDVLRLMDLSWQRGGLLRGERVFNQCREIMPETEI
                     ENCSRRFAAVATNLSTGRELWFTEGDLHLAIRASCSIPGLMAPVAHNGYWLVDGAVVN
                     PIPISLTRALGADIVIAVDLQHDAHLMQQDLLSFNVSEENSENGESLPWHARLKERLG
                     SITTRRAVTAPTATEIMTTSIQVLENRLKRNRMAGDPPDILIQPVCPQISTLDFHRAH
                     AAIAAGQLAVERKMDELLPLVRTNI"
     gene            10181..10639
                     /locus_tag="OQQ19_003209"
     CDS             10181..10639
                     /locus_tag="OQQ19_003209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HCS1804738.1"
                     /translation="MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQ
                     DADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTE
                     GGKTGAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ"
     gene            10689..11531
                     /gene="purU"
                     /locus_tag="OQQ19_003210"
     CDS             10689..11531
                     /gene="purU"
                     /locus_tag="OQQ19_003210"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HCS1804739.1"
                     /translation="MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHR
                     TGRFFMRTELEGIFNDSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLL
                     MKANYGGLDVEIAAVIGNHDTLRSLVERFDIPFELVNHEGLSRNEHDQKMADAIDAYK
                     PDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAH
                     YVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYKVLAQRVFVYGNR
                     TIIL"
BASE COUNT         3174 a         2931 c         2672 g         2978 t
ORIGIN      
        1 cgggaacaaa gtaaaaataa tgacgaagta aacggagcat ggcagctccg tttcatttga
       61 aaggaattaa ttaagcaggc cggggaaaat ccccttaata ccagtaacga taaattcaat
      121 ccccaatgcc atcagcaata gccccataat acgcgtaatc acgttgatgc cggtctggcg
      181 taaaacccgt accagccaag gtgccatgcg gaacaatccc cagcaacata aagcgaacaa
      241 tgcaatagcc acaaagaaac caaacagata gctaatgctg tgataacgcg taccccagac
      301 gatggtagaa ctgatcgccc ctggccccgc catcaacggc aacgccaatg gcaccacacc
      361 aatgctttca cgtaccgcgg tttctgattt ttcttgcttg ttctgtttat cctcgccaag
      421 cttgccgctg atcatcgaca tcgctatcgt caccaccagg atgcccccgg cgatacggaa
      481 cgaatcaatt gatataccaa aaagttgcag aatcgtgtcg ccgagaaaaa gcgagatcca
      541 caagataatg gccacagaca ggttggctgt aaggttagtt ttgtttcgcg ctgccgctgt
      601 ctgataactg gtcatgctga taaagacggg aataatccct accgggttga ccagcgcaaa
      661 taacccgatg aaaaatttga agtaaacggg aaaatcaaaa aaggtctgaa tcacggttag
      721 ctccgaagca aaagccggat aatgttagcc ataaataagg ttgaaaagac gcgctgacaa
      781 tacgcctttt gacagcattt ttcacctcct aactacttaa aattgctatc attcgttatt
      841 gttatctagt tgtgcaaaac atgctaatgt agccaccaaa tcatactaca atttattaac
      901 tgttagctat aatggcgaaa agcgatgctg aaaggtgtca gctttgcaaa aaatttgatt
      961 tggatcacgt aatcagtacc cagaagtgag taatcttgct tacgccacct ggaagtgacg
     1021 cattagagat aataactcta atgtttaaac tcttttagta aatcacagtg agtgtgagcg
     1081 cgagtaagct tttgattttc ataggttaag caaatcatca ccgcactgac tatactctcg
     1141 tattcgagca gatgatttac taaaaaagtt taacattatc aggagagcat tatggctgtt
     1201 actaatgtcg ctgaacttaa cgcactcgta gagcgtgtaa agaaagccca gcgtgaatat
     1261 gccagtttca ctcaagagca agtagacaaa atcttccgcg ccgccgctct ggctgctgca
     1321 gatgctcgaa tcccactcgc gaaaatggcc gttgccgaat ccggcatggg tatcgtcgaa
     1381 gataaagtga tcaaaaacca ctttgcttct gaatatatct acaacgccta taaagatgaa
     1441 aaaacctgtg gtattctgtc tgaagacgac acttttggta ccatcactat cgctgaacca
     1501 atcggtatta tttgcggtat cgttccgacc actaacccga cttcaactgc tatcttcaaa
     1561 tcgctgatca gtctgaagac ccgtaacgcc attatcttct ccccgcaccc gcgtgcaaaa
     1621 gatgccacca acaaagcggc tgatatcgtt ctgcaggctg ctatcgctgc cggtgctccg
     1681 aaagatctga tcggctggat cgatcaacct tctgttgaac tgtctaacgc actgatgcac
     1741 cacccagaca tcaacctgat cctcgcgact ggtggtccgg gcatggttaa agccgcatac
     1801 agctccggta aaccagctat cggtgtaggc gcgggcaaca ctccagttgt tatcgatgaa
     1861 actgctgata tcaaacgtgc agttgcatct gtactgatgt ccaaaacctt cgacaacggc
     1921 gtaatctgtg cttctgaaca gtctgttgtt gttgttgact ctgtttatga cgctgtacgt
     1981 gaacgttttg caacccacgg cggctatctg ttgcagggta aagagctgaa agctgttcag
     2041 gatgttatcc tgaaaaacgg tgcgctgaac gcggctatcg ttggtcagcc agcctataaa
     2101 attgctgaac tggcaggctt ctctgtacca gaaaacacca agattctgat cggtgaagtg
     2161 accgttgttg atgaaagcga accgttcgca catgaaaaac tgtccccgac tctggcaatg
     2221 taccgcgcta aagatttcga agacgcggta gaaaaagcag agaaactggt tgctatgggc
     2281 ggtatcggtc atacctcttg cctgtacact gaccaggata accaaccggc tcgcgtttct
     2341 tacttcggtc agaaaatgaa aacggctcgt atcctgatta acaccccagc gtctcagggt
     2401 ggtatcggtg acctgtataa cttcaaactc gcaccttccc tgactctggg ttgtggttct
     2461 tggggtggta actccatctc tgaaaacgtt ggtccgaaac acctgatcaa caagaaaacc
     2521 gttgctaagc gagctgaaaa catgttgtgg cacaaacttc cgaaatctat ctacttccgc
     2581 cgtggctccc tgccaatcgc gctggatgaa gtgattactg atggccacaa acgtgcgctc
     2641 atcgtgactg accgcttcct gttcaacaat ggttatgctg atcagatcac ttccgtactg
     2701 aaagcagcag gcgttgaaac tgaagtcttc ttcgaagtag aagcggaccc gaccctgagc
     2761 atcgttcgta aaggtgcaga actggcaaac tccttcaaac cagacgtgat tatcgcgctg
     2821 ggtggtggtt ccccgatgga cgccgcgaag atcatgtggg ttatgtacga acatccggaa
     2881 actcacttcg aagagctggc gctgcgcttt atggatatcc gtaaacgtat ctacaagttc
     2941 ccgaaaatgg gcgtgaaagc gaaaatgatc gctgtcacca ccacttctgg tacaggttct
     3001 gaagtcactc cgtttgcggt tgtaactgac gacgctactg gtcagaaata tccgctggca
     3061 gactatgcgc tgactccgga tatggcgatt gtcgacgcca acctggttat ggacatgccg
     3121 aagtccctgt gtgctttcgg tggtctggac gcagtaactc acgccatgga agcttatgtt
     3181 tctgtactgg catctgagtt ctctgatggt caggctctgc aggcactgaa actgctgaaa
     3241 gaatatctgc cagcgtccta ccacgaaggg tctaaaaatc cggtagcgcg tgaacgtgtt
     3301 cacagtgcag cgactatcgc gggtatcgcg tttgcgaacg ccttcctggg tgtatgtcac
     3361 tcaatggcgc acaaactggg ttcccagttc catattccgc acggtctggc aaacgccctg
     3421 ctgatttgta acgttattcg ctacaacgcg aacgacaacc cgaccaagca gactgcattc
     3481 agccagtatg accgtccgca ggctcgccgt cgttatgctg aaattgctga ccacctgggt
     3541 ctgagcgcac cgggcgaccg tactgctgct aagatcgaga aactgctggc atggctggaa
     3601 acgctgaaag ctgaactggg tattccgaaa tctatccgtg aagctggcgt tcaggaagca
     3661 gacttcctgg cgaacgtgga taaactgtct gaagatgcat tcgatgacca gtgcaccggc
     3721 gctaacccgc gttacccgct gatctccgag ctgaaacaga ttctgctgga tacctactac
     3781 ggtcgtgatt atgtagaagg tgaaactgca gcgaagaaag aagctgctcc ggctaaagct
     3841 gagaaaaaag cgaaaaaatc cgcttaatca gtagcgctgt ctggcaacat aaacggcccc
     3901 ttctgggcaa tgccgatcag ttaaggatta gttgaccgat ccttaaactg aggcactata
     3961 acggcttcca caacagggag ccgttttctt atgccacttc tcaatgatct gctcgatttc
     4021 agtgaccatc cgcttatgcc tccgccctct gcacaactat ttgcagaaca ccttcccacc
     4081 gagtggatac aacactgcct gacgctttct gctcatgcga ccgttcgccg ccgtcgttta
     4141 ccgggggaca tggttatctg gatggtggtg caatgagcca attaccgatg ttgttcgccg
     4201 tctgaacctg agcgcggatg gcgaagcggg gatgaacctg ctggcccgca gcgctgtcac
     4261 ccaagcgcgt cagcgcgtgg gggccgcccc agtggaatgg ctcttccgcc agaccgcaca
     4321 gacaggggcg cggaacgtta cctgaaggat gactggcacg gcctgcaact ttttgccatt
     4381 gatggcgcac agttcaggac acctgataaa cccgagctgc gtgaatatta tgggtctgcc
     4441 aacacatcca ctaagcggca gaacgcctac ccggttatgc gtctggtggc cttaatgaac
     4501 ctgggaagtc acattctgct gaatgccgtg accgcacctt accggcagag cgaaactgtg
     4561 ctggcccact ccatgctcgc caccatcccg gataactcta ttacgttgtt tgataagctt
     4621 ttttacagcg aagacctgct gctaacgctg aaccagaagg gttgtaaccg ccactggcta
     4681 ctgcctgcgt ggaagaatat cgcatcagaa atgatagagc tgggaaacac ggcgtcacca
     4741 gggaccatcc cgaaacgact ggagcatctt cggggtgctc tggaagtggt gttcataaca
     4801 aaacgccccc gaccatcaag gccgaggtcg gttaagatat caaaaacccg ttatcctgtg
     4861 aaacatagtg ccgctcctct taagtgaacg gcattgccct tctggggccg tattttttgt
     4921 ttacccaaag caacttttcc ataaaccgac agcattagcc ttcatcatat ttgcgacgat
     4981 gtataacgcc taaatacagg gatattgtac tttacaggtc acaagtcaac gtcggtgctt
     5041 aagagccctg tgaggcgtat agcggcgtta aaaaactgcc gagaagggta tatagcccgg
     5101 aagaagtgcg taaaacgaac tgacaggata aaagtgccct gctcaccctg tcagtaaaga
     5161 aattcttatt aatcgtggcg atgcctttcc tgaatagccg ttaatgagcc gacttgtaac
     5221 gcctctttat agtgtttacg gcatacagaa acgtatcgtt cattaccacc aattaccacc
     5281 tgctcacctt cgttataagg tctgcctgct tgatcaagac gcagcaccat gcttgcttta
     5341 cggccacaaa aacagatggt ttttaattca accagtttgt cggaccatgc cagtaagtat
     5401 tggctgccaa taaataattc acctcgaaaa tcggtacgta aaccataaca aagtacgggt
     5461 atatcgagtt gatcgacaac ctccgataat tcatatactt gttgtctggt taaaaactgg
     5521 cattcatcaa ccagtacgca atgaattgcc tgctgttcat gttccgcacg aatctcatca
     5581 aataatgatg aattttggtt aaataatttt gcaggcgatg acaaacctat acgcgaactg
     5641 actttcccgg caccaaagcg atcatcaatt tctgccgtat atacgacagt gcgcatgccg
     5701 cgttcttggt aattgtatga agattgcaac aatgctgtag acttacccgc attcattgcg
     5761 gaatagtaga aatatagctg tgccatcagc cacaggccct caatgatatg aaataaagtt
     5821 ggctggagtt tatcataatt cgtcagtttt tcagctcaac agtatgcaca gaagtgggta
     5881 tatgcgttct cccttacgaa gccttgcata atccttctga gctatcatta caactgcctc
     5941 gcttgttata agcgggtaaa tgactgctgg taactattca caatctttaa cctgttgcgc
     6001 aagtaatagc cctctgttga cctccaggag atagtgcaat actaagtcca tgctcttatt
     6061 gcgactgttc tacttttcat cattcgctta atagggaatt ctcgtaaaca caactaatac
     6121 agaagactga aaggccgtca gcctacgata atctccccat aaaatgtgac atgaatcagg
     6181 aagttttaac ctcacgtgct gcgaaatcat cggtgtaaat agggctatat gccgcgtctt
     6241 ttctggctaa ttttatgaaa agatatttat tggcggcaca aaataaagaa caattttgaa
     6301 ttccttacat tcctggctat tgcacaactg aatttaaggc tctattatta cctcaacaaa
     6361 ccaccccaat ataagtttga gattactaca atgagcgaag cacttaaaat tctgaacaac
     6421 atccgtactc ttcgtgcgca ggcaagagaa tgtacacttg aaacgctgga agaaatgctg
     6481 gaaaaattag aagttgttgt taacgaacgt cgcgaagaag aaagcgcggc tgctgctgaa
     6541 gttgaagagc gcactcgtaa actgcagcaa tatcgcgaaa tgctgatcgc tgacggtatt
     6601 gacccgaacg aactgctgaa tagccttgct gccgttaaat ccggcaccaa agctaaacgt
     6661 gctcagcgtc cggcaaaata tagctatgtt gacgaaaacg gcgaaactaa aacctggact
     6721 ggccagggcc gtactccagc tgtaatcaaa aaagcaatgg atgagcaagg taaatccctc
     6781 gacgatttcc tgatcaagca ataatctttt gtagattgca attgctaaaa atcccgccat
     6841 cggcgggatt ttttattgtc cggtttaaga caatttaata agaataagct ataaaaaaac
     6901 ggcgtcgatt gttcaacgcc gtttcgtgga taacaccgat atggatgtta cttcttaatg
     6961 cccatctctt cttcaagcca ggctttaaat tccgtgccaa gggtgttatg acgaataccg
     7021 tattcaacga aggcctgcat gtaacctaat ttattaccgc agtcatggct cttccctttc
     7081 atatgatagg cttccaccgt ttctttttcg atcagcatat caattgcgtc ggtgagctga
     7141 atttcatcac cagctcccgg aggggttttt gccagcaacg gccaaatatc cgcgctaagt
     7201 acgtaacgac ccacaatagc gagattagac ggcgcaacat ccgctttcgg tttttctacc
     7261 acaccaacca tcggtacact ttcacccggc gctaattcaa cgcctttgca atccacaacg
     7321 ccatatgcgg tcacatcagc aacctgttca accatgatct ggctatgacc cgtttcatca
     7381 aagcggcgga tcatctctgc caggttatcc tgtgacaaat cggattcata ttcatccaga
     7441 ataacatcag gcaaaataac agctaccggt tcatcaccca ctaccgggtg agcacacaat
     7501 accgcgtgtc ccaggccttt cgccagcccc tgacgaactt gcataatagt cacgtgcggc
     7561 ggacaaatag actgcacttc atcaagcagt tgacgtttta cacgtttttc cagcattgct
     7621 tccagttcaa aactggtatc aaagtggttt tcaatcgagt ttttagatga gtgcgtaacc
     7681 agcacaattt cagtaatgcc agccgcaata cattcattca cgacgtattg aattaatggc
     7741 ttatcgacaa gtggcagcat ctctttcggg atggctttcg tcgccggcaa catcctggtt
     7801 cctaatcccg caacggggat aacggctttt ttgactttcg tattaatggc agccatttaa
     7861 attctcctgg actgttcgtg ttttgaacgt gttcatattt ctgtatcgca tcccagtata
     7921 tcagcacccc gaaggggcta agttctgaaa aggaggcgag ttagcataat taagacaatt
     7981 acttatacga atggcgacga tagtaccacc agccgacatt agcaggtaat gcaaatttag
     8041 tccgcgttat cgtttgctca ttctgcagac aacatcaagc gcagtcgacc accggttccc
     8101 catatttggc attgccaggc atcgcatcgc tggctcaatt gattcaaata agcgttacct
     8161 aaagtgccta acggaacacc attactgatt tgcacctggt gttcgccggt atttaacgtc
     8221 gcattcagac ccgcagaaac cagaatgaga tttttcagtt cgcgatgata atagccaact
     8281 aatagcggaa actgccccgg cagattggcc tgacggagta aatggtttac ctgcttcaat
     8341 aacgcgccca gctctggcaa ccgttgattt tggtgtgcaa gctgttcctg taataatccg
     8401 ttaaacaatg cgcgtaataa caaggcagca agtacgccat tatgtccagc tcgggtgaca
     8461 tcaaggcaat aaaatgccag atcgttttcc gaaagtgcgg caatatcaag caccaggccg
     8521 ggtttgtccg cggcaaccaa ttgacgataa ttaacccggc aatgggaaat cacctgctga
     8581 accggcggtt gtagttcctg taataatttc gccgctgcgg cagggttatc aaccgttgca
     8641 tcccaatcgc gaaaaagcct ttcctcttcc tcaacgcgcg aattaaacat gctgggatag
     8701 agacaggcaa aaaccatctc gcgcaagcga ttcagatctt taactggttt cagcaaaaca
     8761 tcttcaacgc ccagacgtaa cgctttggca atatctgcca tattttcagt ggcagatatc
     8821 accagaactg gggtctggtc gcctctgtta cgtatatgct ccagcagttt aagcccgttc
     8881 attcgtggca tcgcgatatc acatatcatc aggtctggag tgaaacctcc cagcaactca
     8941 agggcatcca ccccatcagc cgccagtacc gttgtcgctc ccaatgagga aaaccatgaa
     9001 tccagaagcg agcgaaatac ctgctcatct tcaacaatga gaatctgttt tccgaccaat
     9061 ggctgcgtca tgttctctcc cctgactggc tttactcaat agtggcatgc tattgccacc
     9121 tgcgcctgtc agaattaact taagtgtaga taaaaattct ggtcaaatgt tggtgcgtac
     9181 caacggcaaa agttcgtcca ttttcctttc cactgccagc tgtccggccg caatggcagc
     9241 gtgcgcgcga tggaaatcaa gcgtagatat ttgcgggcaa acaggttgaa tcagaatatc
     9301 gggcggatca cctgccatgc ggttcctttt aaggcggttc tccagcacct ggatagaagt
     9361 ggtcataatc tctgttgccg ttggcgctgt caccgcccga cgtgttgtta tactgcctaa
     9421 cctttctttc agacgcgcat gccacggcaa agattcacca ttctcgctat tttcttcact
     9481 gacattaaag gagagcaaat cttgttgcat caaatgagca tcgtgctgca ggtcgaccgc
     9541 tatcacaata tcagccccca atgcacgcgt gagggaaata ggaattgggt taactactgc
     9601 tccatcaacc agccagtagc cgttatgtgc aacaggtgcc atgagtcctg gaatactgca
     9661 tgatgcgcga atagcaagat ggagatcgcc ttcagtaaac cataattcac gtcccgtact
     9721 taaattggtg gcaacagccg caaagcgacg ggaacaattt tcgatctctg tttccggcat
     9781 tatttcgcgg cattgattga agacacgctc gccgcgcagt aacccaccgc gctgccagga
     9841 gagatccatc aggcgtaaaa catcccaata actgaaagag gtcacccaat cttccagcgc
     9901 agataatcga tcgcatgcat aggcagcgcc caccagcgaa ccaattgaac atcctgcaac
     9961 gatatcaatt tcaataccca ctttttttag cgcattaata acgccaatat gcgaccaacc
    10021 tctcgccgcg ccagatccca gcgccagccc tatttttatc tttctcatta ttcccgcaag
    10081 attcccctgg aatgcaatcg tagccacatc gctactgctc ggttaacata gtgctactca
    10141 ggcggttaat acgccgttat tgtttccagg gagattattt gtgtctcagc tttgtccctg
    10201 tggtagtgct gtcgagtata gcctatgttg ccacccttat gtgtctggtg aaaaggttgc
    10261 acctgatcca gaacatctca tgcgttcgcg ttactgcgct tttgtgatgc aagacgcaga
    10321 ttatttaata aagacctggc atccctcttg tggagcagcg gcgttacgtg ccgaattgat
    10381 ggccggattt gcgcatactg aatggttggg attgaccgta tttgaacatt gttggcagga
    10441 cgccgacaat atcggatttg tcagttttgt tgctcgattt accgaaggtg gcaaaacagg
    10501 tgcaataatt gaacgttcgc gatttttgaa agaaaacggt caatggtact atattgacgg
    10561 tacacgtccg cagtttggtc gcaacgatcc ctgcccttgt ggttcaggta aaaaatttaa
    10621 aaagtgctgc ggccaataat ggttgacggt acggtttagc aaacactctc aacaaggttt
    10681 ttccagcaat gcattcactc caacgtaaag ttctgcgtac tatttgtccg gaccaaaaag
    10741 gtctgatcgc acgtattacc aatatttgct acaagcacga gttaaatatc gtacagaaca
    10801 atgaatttgt tgatcaccgt accgggcgct tttttatgcg cacggaactg gaagggattt
    10861 ttaatgattc caccctgctg gcggatctcg atagcgcatt gccagaaggc tccgtgcgtg
    10921 agctgaatcc tgccggtcgt cgccggatag tgattctggt cactaaagaa gcgcattgcc
    10981 ttggcgattt gttgatgaaa gccaattacg gcggcctgga tgtcgaaatc gcggcagtta
    11041 ttggtaacca cgatacttta cgttctctgg ttgagcgttt tgatattccg tttgagctgg
    11101 taaaccatga agggttaagc cgcaacgagc acgatcaaaa gatggcagac gccattgatg
    11161 cttataaacc tgactatgtg gtgctggcga agtatatgcg ggtattaacg ccggaatttg
    11221 tggcacgctt cccgaataaa atcatcaata ttcaccattc attcctgcct gcgtttatcg
    11281 gcgcacgtcc ttatcaccag gcctatgaac gtggtgtgaa gattattggc gcaaccgctc
    11341 actatgtgaa tgacaatctg gacgaaggcc caatcatcat gcaggacgtt attcatgtcg
    11401 atcataccta cacagctgaa gatatgatgc gcgcaggtcg tgacgtcgag aaaaacgtct
    11461 taagtcgtgc gctatacaaa gtactggcac agcgcgtctt tgtttacggt aatcggacga
    11521 ttattcttta atcgccagca aaaataactg gttaccttta atccgttacg gatgaaaatt
    11581 acgcaaccag ttcatttttc tcaacgtaac actttacagc ggcgcgtcat ttgatatgat
    11641 gcgccccgct tcccgataag ggagcaggcc agtaaaaagc attaccccgt ggtggggttc
    11701 ccgagcggcc aaagggagca gactgtaaat ctgccgtcat cgacttcgaa ggttc
//
LOCUS       DAJVSY010000135        11576 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.135, whole genome shotgun sequence.
ACCESSION   DAJVSY010000135 DAJVSY010000000
VERSION     DAJVSY010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11576)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11576)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11576
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.135"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..985)
                     /locus_tag="OQQ19_003211"
     CDS             complement(<1..985)
                     /locus_tag="OQQ19_003211"
                     /EC_number="3.4.21.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310582.1"
                     /note="PtrB; oligopeptidase that cleaves peptide bonds
                     following arginine and lysine residues; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase B"
                     /protein_id="HCS1804740.1"
                     /translation="MLPKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLQQEN
                     SYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQS
                     AFSEEWDEWETLLDANKRAAHSEFYSMGGMAITPDNTIMALAEDFLSRRQYGIRFRNL
                     ETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHAIGTPASQDKLIYE
                     EKDDTYYVSLHKTTSKHYVVIHLASATTSEVRLLDAEMADAEPFVFLPRRKDHEYSLD
                     HYQHRFYLRSNRHGKNFGLYRTRLRDEQQWEELIPPRENIMLEGFTLFTDWL"
     gene            complement(1194..1853)
                     /locus_tag="OQQ19_003212"
     CDS             complement(1194..1853)
                     /locus_tag="OQQ19_003212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HCS1804741.1"
                     /translation="MANWLNQLQSLLGQSSSSISSSADQGLGKLLVPGALGGLAGLLV
                     ANKSARKLLTKYGTNALLVGGGAVAGTVLWNKYKDKIRAAHQDEPQFGAQSTPLDERT
                     ERLILALVFAAKSDGHIDAKERAAIDQQLREAGVEEQGRVLIEQAIEQPLDPQRLATG
                     VRNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQDVRDGIERDLEQQKRTLA
                     E"
     gene            complement(2180..2536)
                     /locus_tag="OQQ19_003213"
     CDS             complement(2180..2536)
                     /locus_tag="OQQ19_003213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310584.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YebF"
                     /protein_id="HCS1804742.1"
                     /translation="MKKRGAFLGLLLVSACASVFAANNETSKSVTFPKCEGLDAAGIA
                     ASVKRDYQQNRVARWADDQKIVGQADPVAWVSLQDIQGKDDKWSVPLTVRGKSADIHY
                     QVSVDCKAGMAEYQRR"
     gene            complement(2603..2897)
                     /gene="yebG"
                     /locus_tag="OQQ19_003214"
                     /pseudo
     CDS             complement(2603..2897)
                     /gene="yebG"
                     /locus_tag="OQQ19_003214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310585.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage-inducible protein YebG"
     gene            3031..4209
                     /gene="purT"
                     /locus_tag="OQQ19_003215"
     CDS             3031..4209
                     /gene="purT"
                     /locus_tag="OQQ19_003215"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HCS1804743.1"
                     /translation="MTLLGTALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRY
                     ADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAIATDMLIQLEEERLNVV
                     PCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSS
                     SGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFC
                     APVGHRQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCSDEVI
                     FSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGGIRQYGPAASAVILPQLTSQN
                     VTFDNVQNAVGADLQIRLFGKPEIDGSRRLGVALATAESVVDAIERAKHAAGQVKVQG
                     "
     gene            complement(4265..4906)
                     /gene="kdgA"
                     /locus_tag="OQQ19_003216"
                     /gene_synonym="eda"
     CDS             complement(4265..4906)
                     /gene="kdgA"
                     /locus_tag="OQQ19_003216"
                     /gene_synonym="eda"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HCS1804744.1"
                     /translation="MKNWKTSAESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVL
                     EVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLK
                     AATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCP
                     TGGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREAVEGAKL"
     gene            complement(4943..6754)
                     /gene="edd"
                     /locus_tag="OQQ19_003217"
     CDS             complement(4943..6754)
                     /gene="edd"
                     /locus_tag="OQQ19_003217"
                     /EC_number="4.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HCS1804745.1"
                     /translation="MNPQLLRVTNRIIERSRETRSAYLARIEQAKTSTVHRSQLACGN
                     LAHGFAACQPEDKASLKSMLRNNIAIITSYNDMLSAHQPYEHYPEIIRKALHEANAVG
                     QVAGGVPAMCDGVTQGQDGMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPG
                     LTMAALSFGHLPAVFVPSGPMASGLPNKEKVRIRQLYAEGKVDRMALLESEAASYHAP
                     GTCTFYGTANTNQMVVEFMGMQSPGSSFVHPDSPLRDALTAAAARQVTRMTGNGNEWM
                     PIGKMIDEKVVVNGIVALLATGGSTNHTMHLVAMARAAGIQINWDDFSDLSDVVPLMA
                     RLYPNGPADINHFQAAGGVPVLVRELLKAGLLHEDVNTVAGFGLSRYTLEPWLNNGEL
                     DWREGAEKSLDSNVIASFEQPFSHHGGTKVLSGNLGRAVMKTSAVPVENQVIEAPAVV
                     FESQHDVMPAFEAGLLDRDCVVVVRHQGPKANGMPELHKLMPPLGVLLDRCFKIALVT
                     DGRLSGASGKVPSAIHVTPEAYDGGLLAKVRDGDIIRVNGQTGELTLLVDEAELAARE
                     PHIPDLSASRVGTGRELFSALREKLSGAEQGATCITF"
     gene            complement(6989..8464)
                     /gene="zwf"
                     /locus_tag="OQQ19_003218"
     CDS             complement(6989..8464)
                     /gene="zwf"
                     /locus_tag="OQQ19_003218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HCS1804746.1"
                     /translation="MAVTQTAQACDLVIFGAKGDLARRKLLPSLYQLEKAGQLNPDTR
                     IIGVGRADWDKAAYTKVVREALETFMKETIDEGLWDTLSARLDFCNLDVNDTAAFNRL
                     GAMLDQKNRITINYFAMPPSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSQEIN
                     DQVGEYFEECQVYRIDHYLGKETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVG
                     IEGRWGYFDKAGQMRDMIQNHLLQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDR
                     SNVREKTVRGQYTAGFAQGKKVPGYLEEEGANKSSNTETFVAIRVDIDNWRWAGVPFY
                     LRTGKRLPTKCSEVVVYFKTPELNLFKESWQDLPQNKLTIRLQPDEGVDIQVLNKVPG
                     LDHKHNLQITKLDLSYSETFNQTHLADAYERLLLETMRGIQALFVRRDEVEEAWKWVD
                     SITEAWAMDNDAPKPYQAGTWGPVASVAMITRDGRSWNEFE"
     gene            8802..9671
                     /gene="hexR"
                     /locus_tag="OQQ19_003219"
                     /gene_synonym="yebK"
     CDS             8802..9671
                     /gene="hexR"
                     /locus_tag="OQQ19_003219"
                     /gene_synonym="yebK"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator HexR"
                     /protein_id="HCS1804747.1"
                     /translation="MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEA
                     NVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESA
                     MATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYS
                     DDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLARE
                     ATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES
                     RFDKQLLNLSDDR"
     gene            9799..11241
                     /gene="pyk"
                     /locus_tag="OQQ19_003220"
     CDS             9799..11241
                     /gene="pyk"
                     /locus_tag="OQQ19_003220"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HCS1804748.1"
                     /translation="MSRRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSP
                     EDHKMRADKVREIAAKLGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGK
                     GEGDKEKVGIDYKGLPADVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNK
                     GINKLGGGLSAEALTEKDKADIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDA
                     KIVAKVERAEAVCSQDAMDDIILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQL
                     NRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAM
                     ARVCLGAEKIPSINVSKHRLDVQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRTA
                     LMTSRISSGLPIFAMSRHERTLNLTALYRGVTPVHFDSANDGVAAASEAVNLLRDKGY
                     LMSGDLVIVTQGDVMSTVGSTNTTRILTVE"
     gene            complement(11301..11519)
                     /locus_tag="OQQ19_003221"
     CDS             complement(11301..11519)
                     /locus_tag="OQQ19_003221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001499009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804749.1"
                     /translation="MEYQADYYITINDSIKTWVQTQYSKDSGLPMAVIGHSVAEEAGM
                     RRLASYLDLHSGYPCIHFTGGCDYDWIE"
BASE COUNT         2804 a         2982 c         2892 g         2898 t
ORIGIN      
        1 ccagccagtc ggtaaacagc gtaaaccctt ccagcatgat gttttcgcgt ggcggaatta
       61 actcttccca ctgttgctca tcacgcaggc gggtacggta taagccaaag tttttgccgt
      121 ggcggttgga acgcagataa aaccgatgct ggtagtgatc aaggctgtat tcgtgatctt
      181 tgcggcgcgg cagaaaaaca aacggctcgg catcggccat ttccgcgtcc agcaggcgaa
      241 cttcactggt ggtggcgctg gccaaatgaa tgactacata gtgcttcgag gtcgttttat
      301 gcaggctgac gtaataggta tcgtcttttt cttcgtagat cagtttatct tgcgatgctg
      361 gcgtaccgat ggcgtgacgc cagacctgat aaggcagcag cgtcaccgga tgcttgcgaa
      421 catagtagaa agtccaggag tcatttgccc agacaaagct gggttcaacg ttatccagca
      481 gttccgggta ccagttacca gtttccagat tacgaaaacg aatgccgtac tggcgtcggg
      541 aaagaaaatc ttctgccagc gccataatgg tgttatcggg cgtaatcgcc attccgccca
      601 tcgaataaaa ctcactatga gctgcgcgct tattggcatc gagcaatgtt tcccactcat
      661 cccactcttc actgaatgcc gattgacgct ggtagatagc atattcacag cctggttcat
      721 aaatatgccg atagcggtag ccatttttga tgtagggcgc agaaacttct cgttgcggaa
      781 tgcggtcgat gatttccttt aagatgcgat cctgcaaggc ttgttgtgag gccatcaccc
      841 gatgaccgta actattttct tgttgcaggt agtccaggac ttctggctga gaacgcgtat
      901 cgtcccgcag ccagtagtaa ttatcgatgc gcgtatcgcc atgaagcgtc atggcgtggg
      961 gaatgcgggc ggcttttggt agcatgttat tgttctttct ggttgaaaca tcttataagg
     1021 gtggcaaaac tcaccgggga tgcaagcgaa acaggggagt cattgcttag atgatgacag
     1081 gtaatggcgc ggatatcgaa tgttatgcag acagagaaaa tcagcctgtt caaatggctg
     1141 tgcgattctg gatagcccga aatagtcaac ttcaggctat ccagagagcg gaattattcc
     1201 gccaaagtgc gtttttgctg ttcgagatcg cgttcaatgc cgtcacgaac atcctggggg
     1261 attttcagcg cgtcacccag tgcattcagg taactgcgtt ccataaaatg gtcaatatca
     1321 atagccgcgc aactcaggaa atagatttcc agcgcctctt cttcattgcg gaccccggta
     1381 gccaagcgtt gtggatccag cggttgttcg attgcctgct caatgagtac acgcccctgc
     1441 tcttccacgc cggcttcacg caattgctgg tcgattgccg cacgttcttt ggcatcaata
     1501 tgaccatcac ttttagcggc aaagaccagc gcaaggatca aacgttctgt acgctcatcc
     1561 agcggcgtac tttgcgcgcc aaactgcggt tcgtcctgat gcgccgcgcg aattttatct
     1621 ttgtatttat tccacagcac cgtacccgct accgctccgc cgccaaccag taacgcgttg
     1681 gtgccatatt tcgtaagaag tttacgtgct gatttatttg cgaccagcag cccagccagt
     1741 ccgcctaatg cgcctggcac taacagtttg cccaatccct gatccgcaga cgaggagata
     1801 gaagaactgc tttgcccaag cagggattgc agttgattta accagttagc catatttgct
     1861 cctcaataac catttttagt gcctgtagca tagcggatga ggatgtcaga aaatgtatat
     1921 cgagacaaaa gatgcgcaaa taagcggggc ggtaggccgt tattcaaaga aattcgcgcc
     1981 aggtaaggta tttactgtat atcaggtgat aagggtattt taggtgaaag tagtttgtcg
     2041 ttttgagtgg cattgtttga tgctgattgc ccgatgcgac gctgttgcgt cttctcaggc
     2101 ctacgattgt ggtgcgttct ggggcggaca aggcactcgc gccgcatccg ccaacggtca
     2161 atcgaattat cagaagccat taacgccgct gatattccgc cattcccgct ttgcagtcca
     2221 cgctgacctg gtaatgaata tcggcacttt taccacgcac ggttagcggt actgaccatt
     2281 tatcatcttt accctgaatg tcctgcaaac tgacccaagc cacgggatcg gcctgaccga
     2341 caattttttg atcatctgcc caacgcgcca cgcgattttg ttgataatca cgttttacgc
     2401 tcgcggcaat tccggcagca tccagacctt cacactttgg gaaagtgacc gacttgctgg
     2461 tttcattatt ggcagcgaaa actgatgcgc aggcagaaac caacaacagc cctaaaaacg
     2521 cccctctttt tttcatgttt ttctccatag cacaatgatt caggagaaag catggtacaa
     2581 attgtcagga gcgcaagttg cttcaggccg cgtgtgaggc atcttcctct tcggattcag
     2641 caccgacgac ctgtgggtgg ggacggtaat ttgccggttt tcagaatggt gctcagcaca
     2701 tctttttgtt ctgccagcca tagcgaaagg gcttcacgtt gctcgtcttc catttgcact
     2761 ggagaattag tcagccaggt gtcaagcaga tccgccgtat caagcatttt gtcataagca
     2821 tcggcttcct ttttgctggt aaacgacatt ttctcttcgc cctcacgaat gactacgtat
     2881 ttaacttcaa ccgccatttg cagcctctca taataactgt gattttatac agtatatttc
     2941 ttttcggttg agaaatcaaa atcaacaata aagacacacg caaacgtttt cgtttatact
     3001 gcgcgcggaa ttaatcaggg gatattcgtt atgacgttat taggcactgc gctgcgtccg
     3061 gcagcaactc gcgtgatgtt attaggctcc ggtgaactgg gtaaagaagt ggcaatcgag
     3121 tgtcagcgtc tcggcgtaga ggtgattgcc gtcgatcgct atgccgacgc accagccatg
     3181 catgtcgcgc atcgctccca tgtcattaat atgcttgatg gtgatgcatt acgccgtgtg
     3241 gttgaactgg aaaaaccaca ttatatcgtg ccggagatcg aagctattgc caccgatatg
     3301 ctgatccaac ttgaagagga aagactgaat gttgtcccct gcgctcgcgc aacgaaatta
     3361 acgatgaatc gcgagggtat ccgtcgcctg gcggcagaag agctgcagct gcccacttcc
     3421 acttatcgtt ttgccgatag cgaaagcctt ttccgcgagg cggttgctga cattggctat
     3481 ccctgcattg taaaaccggt gatgagctct tccggcaagg ggcagacgtt tattcgttct
     3541 gcagagcaac ttgctcaggc atggaagtac gctcagcaag gcggtcgcgc cggagcgggc
     3601 cgcgtaattg ttgaaggcgt cgttaagttt gacttcgaaa ttaccttgct aaccgtcagc
     3661 gcggtggatg gcgtccattt ctgtgcaccg gtaggtcatc gccaggaaga tggcgactac
     3721 cgtgaatcct ggcaaccaca gcaaatgagc ccgcttgccc ttgaacgtgc gcaggagatt
     3781 gcccgtaaag tggtgctggc actgggcggt tatggtctgt ttggtgtcga gctgtttgtc
     3841 tgtagtgatg aggtgatttt cagtgaggtc tcccctcgtc cacatgatac cgggatggtg
     3901 acgttaattt ctcaagatct ttcagagttt gccctgcatg tacgtgcctt cctcggactt
     3961 ccggttggcg ggatccgtca gtatggtcct gcagcttctg ccgttattct gccacaactg
     4021 accagtcaga atgtcacgtt tgataatgtg cagaatgccg taggcgcaga tttgcagatt
     4081 cgtttatttg gtaagccgga aattgatggc agccgtcgtc tgggtgttgc gctggcgacc
     4141 gctgagagtg ttgttgacgc cattgaacgc gcgaagcacg ccgccggaca ggtaaaagta
     4201 cagggttaaa cccggcaaaa aaacgctaca aaaatgcccg atcgtagatc gggcgttttg
     4261 acttttacag cttagcgcct tctacagctt cacgcgccag cttagtaatg cggtcgtaat
     4321 cgcccgcttc cagcgcatct gccggaacca gccaggaacc accgatgcac agcacgcttt
     4381 tcagcgccag gtagtcacgg tagttagccg gagaaatacc acccgtcggg cagaaacgga
     4441 cctgggagaa cggacccgcg atcgcctgca gggctttcac gccgccgtta gcttcagccg
     4501 ggaagaattt gaactctttc aaaccgtagt ccatacccag catcagttcg gaaacagtgc
     4561 tgatccccgg aattagagga atagtccctt cggtagcagc tttcagcagc ggctcggtca
     4621 gacccgggct aattgcgaac tgtgcacccg cttcagtgac ttctgccagc tgctgtggat
     4681 tcagcaccgt accggcaccc acaatcgctt caggcacttc tttggcgata gcacggatag
     4741 cgtcaactgc acactcggta cgcagagtca cttccagaac gcgcacccca ccagcaacca
     4801 acgcttttgc catcggcact gcgtgttcca gtttttttac cacgataacc ggtacaaccg
     4861 ggccggtggt caggattgat tctgcacttg ttttccagtt tttcatcaga gttttctctc
     4921 gcctgattac aaatttgtcg tcttaaaaag tgatacaggt tgcgccctgt tcggcaccgg
     4981 acagtttttc acgcaaggcg ctgaataatt cacgtcctgt ccccacgcgt gacgcgctca
     5041 ggtcaggaat gtgcggttcg cgagcagcca gttccgcttc gtctaccagc agcgtcagtt
     5101 cgcctgtctg tccattcaca cgaatgatgt ccccgtcgcg cacttttgcc agcagcccgc
     5161 catcgtaggc ttctggtgtt acgtggatag ctgacggcac tttacctgaa gcgccggaga
     5221 gtcgtccatc ggtaactaac gcaattttga aacaccggtc caataataca ccaagtggcg
     5281 gcatgagttt atgtaattct ggcattccgt tcgcttttgg cccctgatga cggacaacaa
     5341 cgacacaatc gcggtccagc aaacccgctt caaaggccgg cataacgtca tgctggcttt
     5401 caaaaacaac cgctggcgct tcaatcacct ggttctcaac cggcacggca gaggttttca
     5461 taaccgcacg gcccaggtta ccgcttaaca cttttgtccc accatgatga gagaaaggtt
     5521 gttcgaagga agcgatcaca ttgctgtcga gtgatttttc cgccccttcc cgccagtcca
     5581 gttcaccatt attcagccat ggttcaaggg tataacgaga cagaccaaag cctgccaccg
     5641 tattgacatc ttcatgcagc aggcctgctt tgagcagttc acgcaccaga accggtacgc
     5701 cacctgccgc ctggaagtgg ttaatatcgg ccggaccgtt cgggtagaga cgtgccatca
     5761 gcggtacaac atcagaaagg tcagagaagt catcccagtt aatctgaata ccggccgcgc
     5821 gcgccatcgc caccaggtgc atggtgtggt tagtggaacc accggtcgcc agcagtgcaa
     5881 cgataccgtt caccaccact ttctcatcga tcatcttacc gatcggcatc cattcattac
     5941 cattaccggt catgcgtgta acctgacgcg cagcggcagc ggtcaaagca tcgcgcagcg
     6001 gagaatccgg atgaacaaaa gaagagcctg gcgactgcat ccccataaat tccaccacca
     6061 tctggttggt gttggcagta ccgtagaaag tacatgttcc cggcgcatgg taagacgcgg
     6121 cttctgactc cagtaaggcc atgcggtcca ctttaccttc ggcataaagc tggcgaatac
     6181 gcactttttc tttatttggc aaaccgcttg ccatcggtcc agacggcaca aacaccgcag
     6241 gcaaatgacc aaacgacagg gctgccatcg tcagacccgg gacaatcttg tcgcacacac
     6301 cgaggaacag agcaccatca aacatgttat gggacagccc caccgccgca gacatcgcta
     6361 tcacttcgcg gcttagcagc gacaattcca ttccatcctg cccctgggtg acaccatcac
     6421 acatcgccgg aacaccgccc gcaacctgac caaccgcatt cgcttcatgc agggctttac
     6481 gaatgatttc tggatagtgt tcataaggct ggtgcgcgga gagcatgtcg ttataggagg
     6541 tgatgatggc gatattgtta cgcaacatgc ttttcaaaga ggctttgtct tctggctggc
     6601 aggcagcgaa accgtgtgcc aggttaccgc atgccaactg cgaacgatga acggtcgacg
     6661 ttttcgcttg ttctatccgg gcgagataag cagagcgagt ctcgcgcgaa cgttcaatga
     6721 ttcgatttgt tacgcgtaac aattgtggat tcataaaggc tcctgaaatt gagttgtcag
     6781 agcaggatga ttcacaacgc gtttcattca gaggatttat gagtgaaacg cctgtaaccg
     6841 gagctcatag ggcaaaaacg tttcagtcag tgtaataaaa aaagcctcgt gggtgaatcc
     6901 gcacgaggcc tgaaagtgta aaaattgttc tacaatctgt gcaagatcat gttaccggta
     6961 aaataaccat aaaggataag cgcagatatt actcaaactc attccaggaa cgaccatcac
     7021 gggtaatcat cgccaccgag gcaacgggtc cccaggttcc ggcctgatac ggtttcggcg
     7081 catcattgtc catcgcccac gcctcagtaa tggagtctac ccatttccag gcttcttcca
     7141 cttcatcacg acgtacaaac agtgcctgaa taccacgcat ggtttccagc agcagacgtt
     7201 cataggcatc cgccagatgc gtctgattaa aggtttctga atagctcaga tccagcttgg
     7261 tgatttgcag gttatgtttg tggtcaaggc caggaacttt attcagtacc tggatatcca
     7321 cgccttcatc aggttgcaga cggatagtca gtttattctg cggcagatcc tgccacgact
     7381 ctttaaacag attcagttca ggtgttttga aatagaccac gacttcagaa catttggtcg
     7441 gcagacgttt accagtacgc aggtagaatg gcacaccggc ccagcgccag ttatcaatgt
     7501 cgacgcggat cgccacgaag gtttctgtat tgctgctctt gttcgcaccc tcttcttcca
     7561 gatatcccgg cacttttttg ccctgggcga agcccgcagt atattgccca cgtacggttt
     7621 tttcgcgtac gttggagcgg tcgatgcggc gcagggactt cagtactttc actttttcat
     7681 cgcggatgct gtctgcgctc aggtcagatg gcggagacat cgcaatcatg cagagaattt
     7741 gtagcaggtg gttctgaatc atgtcacgca tctgaccggc tttatcaaaa tagccccagc
     7801 gcccttcgat ccccacttct tctgccacgg taatctcaac atgatcaatg gtgcgattgt
     7861 cccagttatt cacaaacagg gagttagcaa aacgcagcgc caacaggttc agcaccgttt
     7921 ctttaccaag atagtggtcg atacggtaaa cctggcactc ctcgaagtat tcgccaacct
     7981 gatcattgat ttcctgcgag gtcgccagcg acgtccccag cggtttctcc atgactacgc
     8041 gtgccggttt agcattcagt tttgcctcgc caagcccttt gcaaattgcg ccaaaagtgc
     8101 tgggcggcat ggcaaagtag ttaatggtga tacgattttt ttgatccagc atcgcgccga
     8161 gacggttgaa tgcagcagtg tcattgacat cgagattaca aaaatccaga cgtgcactca
     8221 gggtgtccca taaaccttca tcaatggttt ctttcatgaa agtttcgagc gcctcgcgga
     8281 caactttggt atatgccgct ttatcccagt cagcacgccc tacgccgata atccgggtgt
     8341 ccgggttgag ctgaccggct ttttccagtt gatacaggga aggcagcaat ttacgacgcg
     8401 caaggtcgcc tttcgcgccg aaaatgacca ggtcacaggc ctgggctgtt tgcgttaccg
     8461 ccatgtcatt ctccttaagt taactaaccc ggtacttaag ccagggtata cttgtaattt
     8521 tcttacggtg cactgtactg cttttacgag cttgcgaaaa ctgtaaacgc ttatccaccc
     8581 gtgcgattac gggaaaagcg cgcaaagcgc ggcaaaactg ataaaaaaat catcgttttc
     8641 cattcggtaa aaatctgaca ctgatcatgt tatgaaaaaa aataacaact tttttatctg
     8701 cttttgtcat taacacggca cacaggcgta atatctgaca aaactgcatt tcgatttctt
     8761 tcagtgcgga aatcgtcatt acccgtgagt ctctttacat catgaatatg ctggaaaaaa
     8821 tccagtctca gctggaacat ttgagcaaat cagagcgcaa agttgccgag gtcattctgg
     8881 cttcgcccga taacgcgatc cattcgagta ttgctgctat ggcactggaa gccaatgtta
     8941 gcgaaccgac ggtgaatcgt ttctgtcgca gcatggacac gcgcggtttt cctgatttta
     9001 aacttcatct ggcacagagt ctggcgaatg gcactcccta tgttaatcgc aatgtcaatg
     9061 aagatgacag cgttgaatca tacacaggga aaatatttga gtccgcaatg gcaacgcttg
     9121 atcatgtccg tcattcactg gataaatctg ccatcaaccg cgccgtcgac ttgctcactc
     9181 aggcaaaaaa aatcgccttt ttcggattag gctcttcagc cgccgttgcc cacgatgcga
     9241 tgaataagtt ctttcgtttt aatgttccgg tggtgtactc cgatgatatc gtgctgcaac
     9301 gcatgagttg tatgaattgt agcgacggag acgtggtggt gctgatttct cacactggaa
     9361 gaacaaaaaa tctggtcgag ctggcgcagc tggctcgcga aaacgacgca atggtgattg
     9421 ccctcacctc tgcgggtacc ccgctcgccc gggaagcaac gctggcaatt accctcgacg
     9481 taccggaaga tactgacatt tatatgccca tggtttctcg acttgcacag ctgaccgtga
     9541 tagatgtgct ggcgacagga tttactttgc gacgcggtgc aaaattcaga gataacttga
     9601 agcgggtcaa ggaagcgctg aaggaatcgc gttttgataa gcagttactt aatttaagtg
     9661 acgatcgcta aaaacgactg tcactgtcct aatcttatac gacatccgaa tgagattaat
     9721 ttatcgccat cgcggcgtta tttcattcgg atttcatgtt caagcaacac ctggttgttt
     9781 cagtcaacgg agtattacat gtccagaagg cttcgcagaa caaaaatcgt taccacgtta
     9841 ggcccagcaa cagatcgcga taataatctt gaaaaagtta tcgcggcggg tgccaacgtt
     9901 gtacgtatga acttttctca cggctcgcct gaagatcaca aaatgcgcgc ggataaagtt
     9961 cgtgagattg ccgcaaaact ggggcgtcat gtggctattc tgggtgacct ccaggggccc
    10021 aaaatccgtg tatccacctt taaagaaggc aaagttttcc tcaatattgg ggataaattc
    10081 ctgctcgacg ccaacctggg taaaggtgaa ggcgacaaag aaaaagtcgg tatcgactac
    10141 aaaggcctgc ctgctgacgt cgtgcctggt gacatcctgc tgctggacga tggtcgcgtc
    10201 cagttaaaag tactggaagt tcagggcatg aaagtgttca ccgaagtcac cgtcggtggt
    10261 cccctctcca acaataaagg tatcaacaaa cttggcggcg gtttgtcggc tgaagcgctg
    10321 accgaaaaag acaaagcaga cattaagact gcggcgttga ttggcgtaga ttacctggct
    10381 gtctccttcc cacgctgtgg cgaagatctg aactatgccc gtcgcctggc acgcgatgca
    10441 ggatgtgatg cgaaaattgt tgccaaggtt gaacgtgcgg aagccgtttg cagccaggat
    10501 gcaatggatg acatcatcct cgcctctgac gtggtaatgg ttgcacgtgg cgacctcggt
    10561 gtggaaattg gcgacccgga actggtcggc attcagaaag cgttgatccg tcgtgcgcgt
    10621 cagctaaacc gagcggtaat cacggcgacc cagatgatgg agtcaatgat tactaacccg
    10681 atgccgacgc gtgcagaagt catggacgta gcaaacgccg ttctggatgg tactgacgct
    10741 gtgatgctgt ctgcagaaac tgccgcaggg cagtatccgt cagaaactgt tgcagccatg
    10801 gcgcgcgttt gcctgggtgc ggaaaaaatc ccgagcatca acgtttctaa acaccgtctg
    10861 gacgttcagt tcgacaatgt ggaagaagct attgccatgt cagcaatgta cgcagctaac
    10921 cacctgaaag gcgttacggc gattattacc atgaccgaat cgggtcgtac cgcgctgatg
    10981 acctcccgta tcagctctgg tctaccaatt ttcgccatgt cgcgccatga acgtacgctg
    11041 aacctgactg ctctctatcg tggcgttacg ccggtgcact ttgatagcgc taatgacggc
    11101 gtagcagctg ccagcgaagc ggttaatctg ctgcgcgata aaggttactt gatgtctggt
    11161 gacctggtga ttgtcaccca gggcgacgtg atgagtaccg tgggttctac taataccacg
    11221 cgtattttaa cggtagagta atctcacctg ccccggccgc tgatggccgg ggtatttagc
    11281 aacacataaa ttaggactac ttattcaatc caatcataat cacagccccc tgtaaaatga
    11341 atacagggat agcctgaatg gagatctaaa tagcttgcaa gacgtcgcat acccgcttcc
    11401 tctgcaacac tatgtccaat aactgccatc ggtaagccac tatctttgga gtattgtgtc
    11461 tgcacccatg ttttaattga atcgttaatc gtaatataat aatcagcctg atattccata
    11521 tattgtattg gatcacaaaa acagcctgcc ccaatgccaa cagttctgac tactct
//
LOCUS       DAJVSY010000136        11422 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.136, whole genome shotgun sequence.
ACCESSION   DAJVSY010000136 DAJVSY010000000
VERSION     DAJVSY010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11422)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11422)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11422
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.136"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            177..614
                     /locus_tag="OQQ19_003222"
     CDS             177..614
                     /locus_tag="OQQ19_003222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001524956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HCS1804750.1"
                     /translation="MKTIKPESIALFCLLSGDVDLAKHLADILPITCFVGEDWQQDFQ
                     PLDGGPVQSLSDSYSDYSVLLLIAAESEISVPEWLAHSEGTTVILIAEHNARLLTGPA
                     GGAVALIHYLNEICHSRETAVNDAFCRTLTRGSLAIPQCHLLS"
     gene            748..1292
                     /gene="cobU"
                     /locus_tag="OQQ19_003223"
                     /pseudo
     CDS             748..1292
                     /gene="cobU"
                     /locus_tag="OQQ19_003223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416497.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adenosylcobinamide
                     kinase/adenosylcobinamide-phosphate guanylyltransferase"
     gene            1289..2032
                     /gene="cobS"
                     /locus_tag="OQQ19_003224"
     CDS             1289..2032
                     /gene="cobS"
                     /locus_tag="OQQ19_003224"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HCS1804751.1"
                     /translation="MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLL
                     GAISGLVFMVLQAWCGVPLAALFSVLVLALMTGGFHLDGLADTCDGVFSARSRDRMLE
                     IMRDSRLGTHGGLALIFVVLAKILVLSELALRGEPILALLAAACAVSRGTAALLMYRH
                     RYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQL
                     LKRTLGGQTGDTLGAAIELGELVFLLALL"
     gene            2044..3123
                     /gene="cobT"
                     /locus_tag="OQQ19_003225"
     CDS             2044..3123
                     /gene="cobT"
                     /locus_tag="OQQ19_003225"
                     /EC_number="2.4.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide--dimethylbenzimidazole
                     phosphoribosyltransferase"
                     /protein_id="HCS1804752.1"
                     /translation="MQTLADLLNTIPAIDPAAMSRAQRHIDGLLKPVGSLGRLEALAI
                     QLAGMPGLNGVPHVGKKAVLVMCADHGVWEEGGAISPKEVTAIQAENMTRGTTGVCVL
                     AAQAGANVYVIDVGIDTAEPIPGLINMRVARGSGNIASAPAMSRHQAEKLLLDVICYT
                     RELAKNGVTLFGVGELGMANTTPAAAIVSTITGRAPEEVVGIGANLPTDKLANKIDVV
                     RRAITLNQPNPQDGVDVLAKVGGFDLVGMAGVMLGAASCGLPVLLDGFLSYAAALAAC
                     QMSPAIKPYLIPSHLSAEKGARIALSHLGLEPYLNMEMRLGEGSGAALAMPIIEAACA
                     IYNNMGELAASNIVLPGNTTSDLNS"
     gene            3185..4120
                     /gene="ldtA"
                     /locus_tag="OQQ19_003226"
     CDS             3185..4120
                     /gene="ldtA"
                     /locus_tag="OQQ19_003226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310812.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HCS1804753.1"
                     /translation="MMRRVNIFCSFALLFASHTSLAVTYPLPPEGSRLVGQSYTVTVP
                     DHNTQPLETFAAQNGQGLSNMLEANPGADVFLPKSGSQLTIPQQLILPATVRKGIVVN
                     VAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYA
                     KRGESLPAFVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKY
                     LFDNVPVGTRVQIIDQPVKYTTEPDGSNWLEVHEPLSRNRAEYEFDRKVPLPVTPSLR
                     AFISGQEVDVNRANAALQRRSGMPVPISSGSRQMF"
     gene            complement(4176..4251)
                     /locus_tag="OQQ19_003227"
     tRNA            complement(4176..4251)
                     /locus_tag="OQQ19_003227"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4216..4218),aa:Asn,seq:gtt)
     gene            4578..4949
                     /locus_tag="OQQ19_003228"
                     /pseudo
     CDS             4578..4949
                     /locus_tag="OQQ19_003228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416493.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            4948..5382
                     /locus_tag="OQQ19_003229"
                     /pseudo
     CDS             4948..5382
                     /locus_tag="OQQ19_003229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310806.1"
                     /note="Catalyzes the hydrolysis of AMP to form adenine and
                     ribose 5-phosphate using water as the nucleophile;
                     incomplete; partial in the middle of a contig; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AMP nucleosidase"
     gene            5725..6441
                     /locus_tag="OQQ19_003230"
     CDS             5725..6441
                     /locus_tag="OQQ19_003230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCS1804754.1"
                     /translation="MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELN
                     TSLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSN
                     VNRTIANVRTIFNKKGGNIGAAGSVSYMFDNTGVIVFKGSDPDHIFEILLEAEVDVRD
                     VTEEEGNIVIYTEPTDLHKGIAALKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGL
                     VDALEDDDDVQKVYHNVANL"
     gene            complement(6897..6972)
                     /locus_tag="OQQ19_003231"
     tRNA            complement(6897..6972)
                     /locus_tag="OQQ19_003231"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6937..6939),aa:Asn,seq:gtt)
     gene            complement(7073..8716)
                     /gene="yeeO"
                     /locus_tag="OQQ19_003232"
     CDS             complement(7073..8716)
                     /gene="yeeO"
                     /locus_tag="OQQ19_003232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416491.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxic metabolite efflux MATE transporter YeeO"
                     /protein_id="HCS1804755.1"
                     /translation="MLRHILTAKNLLSNPIFKFPNCLPFLSTVCCICRQFVGENLCSF
                     ADSPSLFEMWFHFLQLRSALNISSALRQVVHGTRWHAKRKSYKVLFWREITPLAVPIF
                     MENACVLLMGVLSTFLVSWLGKDAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLG
                     KRDRRRARVATRQSLVIMTLFAVLLATLIHHFGEQIIDFVAGDATTEVKVLALTYLEL
                     TVLSYPAAAITLIGSGALRGAGNTKIPLLINGSLNILNIIISGILIYGLFSWPGLGFV
                     GAGLGLTISRYIGAVAILWVLAIGFNPALRISLKSYFKPLNFSIIWEVMGIGIPASVE
                     SVLFTSGRLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGSALGSASTIITGRRLGVG
                     QIAQAEIQLRHVFWLSTLGLTAIAWLTAPFAGVMASFYTQDPQVKHVVVILIWLNALF
                     MPIWSASWGLPAGFKGARDARYAMWVSMLSMWGCRVVVGYVLGIMLGWGVVGVWMGMF
                     ADWAVRAVLFYWRMVTGRWLWKYPRSEPQKCEKKPVVSE"
     gene            8721..8796
                     /locus_tag="OQQ19_003233"
     tRNA            8721..8796
                     /locus_tag="OQQ19_003233"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8754..8756,aa:Asn,seq:gtt)
     gene            8958..10220
                     /locus_tag="OQQ19_003234"
     CDS             8958..10220
                     /locus_tag="OQQ19_003234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000055676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HCS1804756.1"
                     /translation="MSLNDSKIRNLKPSSKPVKLSDSHGLYLLVNQGGSRIWYLKYRF
                     SGKESRVSLGAYPLVSLAEARQRRDDIRKLLTQNINPAHQRMSDKAAASPEKYFKAVA
                     LAWHKTNKKWSPDYAARILASMENHIFPAIGHLPVTTLKTQNFTALLRVIEDKGFLEV
                     ASRTRQQLCNIMRYAVQQGFTENNLAQHLEGVTAPPVKNHYPALPLERLPELFERIGD
                     YQQGRQLTRLAVVLTLHLFIRSSELRFARWGEIDFRNKIWTIPATREAIEKVRFSGRG
                     AKMRTPYIVPLSRQAIAILKQIKEISGHLELVFPGDHNPYKPMSENTVNRALRLMGYD
                     TKTDVCGHGFRTMACSALVETELWSRDTVERQMSHQERNSVRAAYIHRAEHLDARTAM
                     MQWWSDYLDVSREGYVAPYIYARRHKAA"
     gene            complement(10939..>11422)
                     /locus_tag="OQQ19_003235"
     CDS             complement(10939..>11422)
                     /locus_tag="OQQ19_003235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000511771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="integrase domain-containing protein"
                     /protein_id="HCS1804757.1"
                     /translation="MAAALELSRLMGLRSQEVVQSAQSLRTWKQSLERGEPRLTVVFG
                     TKGGRPRETVILDAVAIRKALDNALVVAEDRHGRLIDKPDLKSAMKYWHSQASRLGLT
                     GTYSPHSLRYAWAQDAIRHYLAQGFSEKEALAMTAMDLGHGDGRGRYVAQVYGRKDTD
                     "
BASE COUNT         3027 a         2668 c         2779 g         2948 t
ORIGIN      
        1 aatttctttt tttcattgga gcacctgtgt tgttctgagg tgagcatatc acctctgttc
       61 aggtggccaa attcagtgtg ccacttcacc agggctgcat tcaaggtgtg gcaatattgt
      121 ttcatggctt atcaaccaga gcgccattac aggaaattaa gtggagggcg agaggcatga
      181 aaacgataaa acccgaatcg atagctcttt tttgcctctt atctggagat gtggatctgg
      241 cgaaacatct ggctgatata ttgccaataa cctgttttgt tggtgaggac tggcagcaag
      301 atttccagcc tcttgatggt gggcctgtgc aatcgttatc agattcgtat agcgattatt
      361 cagtgctgct attgatagca gctgaaagcg agatatccgt accagaatgg ctcgctcatt
      421 ctgagggaac gacggtaatt ttgattgcag aacacaatgc ccgtttgctg actggtccgg
      481 ctggtggggc tgtagcatta atccattatc tgaatgaaat ctgtcattcc agagaaaccg
      541 ctgtcaatga cgcattttgt cggacgttaa cacgaggaag tctggctatt ccgcaatgcc
      601 atcttctttc gtaatggatt gagaatgctg gatttttaat tatattacgc gcagtattaa
      661 tcgcgtaaat gttttgcggt cagcaacggt gggggatcca ttgttctgtt caatgaatac
      721 catcatacaa ttgaatcagg agtcggtatg atgatttcgg tgacgggggg cgtacggagc
      781 gggaagagtc gccacgcaga ggcgcttatt ggggactctt cacaggttct gtatacgcca
      841 cctcgcaaat ccttgatgat gagatggctg cacggataga acatcatcgg caaggccgcc
      901 cgacgcactg gcacacagtg gagcgctggc aacatcttga tgaattaatt catgcagaca
      961 ttaacccgca tgaggctgta ttgctggaat gcgttaccac catggtgact aatctgttgt
     1021 ttgattatgg cggcgataaa gaccctgatg aatgggatta tcaggcgatg gaacaggcga
     1081 ttaatgctga gattcagtcg ttgattgctg cctgccaacg ttgtcccgca aaggttgtat
     1141 tagtgactaa cgaagtggga atggggattg tgccggagag tcgtctggca cgacattttc
     1201 gtgatattgc cgggcgggta aatcagcagc tggccgctgc ggcaaatgaa gtatggttgg
     1261 tggtttcggg tattggagta aaaatcaaat gagtaaatta ttttgggcga tgctctcttt
     1321 tattacgcgt ctgcctgtac cgcgtcgctg gtcccaggga ctggatttcg agcattattc
     1381 tcgcggtatt attacttttc ctttaattgg attattgctt ggcgcgatta gcgggctggt
     1441 cttcatggtg ctgcaggcat ggtgtggcgt accactggcg gcactgttta gcgtacttgt
     1501 gctggcgctg atgaccgggg gattccacct ggacggcctc gccgatacct gtgatggcgt
     1561 attttctgca cgtagccgcg atcgcatgtt ggaaatcatg cgtgatagcc gtttaggcac
     1621 ccacggcggt ctggcattga tttttgttgt actggcaaag attctggtat taagcgagtt
     1681 ggctctgcgt ggcgaaccga tccttgcatt gctggcggca gcatgtgcgg tcagccgcgg
     1741 gactgccgca ttattgatgt atcgtcatcg ttatgcccgg gaagaaggac ttggcaatgt
     1801 gttcattggc aaaattgatg ggcgacaaac ctgcgtcaca ctcggcttag ccgctatttt
     1861 tgctgccgta ttattgccgg gtatgcatgg tgtggctgct atggtggtga cgatggtggc
     1921 gattttcatc ctcggtcagc ttctcaaacg tacgctgggc gggcaaaccg gcgatacgct
     1981 gggagctgct atagagcttg gtgaactggt cttcctgctg gcactgctat aaagagacgt
     2041 gacattcaaa cacttgccga tttactgaat acgatccctg ctatcgatcc tgccgctatg
     2101 tcgcgtgcac aacggcatat cgacgggtta ctcaaacctg ttggtagcct gggaaggctg
     2161 gaggcgcttg ccatacaact ggcaggaatg ccggggttga atggcgttcc gcatgtgggc
     2221 aaaaaagcgg tactggtcat gtgtgccgat cacggcgtct gggaggaagg gggcgctatt
     2281 tccccaaaag aagtgacagc cattcaggct gaaaatatga cccgcggaac aaccggcgtg
     2341 tgtgtgctgg cagcacaagc gggcgctaac gtctacgtaa ttgatgttgg tattgatact
     2401 gctgagccta tccccgggct tatcaacatg cgtgttgctc gaggtagtgg caatattgct
     2461 tcagctccgg caatgagtcg ccatcaggca gaaaagttgc ttttggacgt catatgttat
     2521 acgcgggagc tggcaaaaaa cggtgttacg ctgtttggtg taggtgaact ggggatggca
     2581 aacacgacac cggcagcggc aatagtcagc acaatcactg gccgggctcc tgaagaagtg
     2641 gttgggattg gcgcaaacct gccgacagat aaactggcta ataaaattga tgttgtgcgc
     2701 cgggcgatta cgttgaatca accaaatccg caggatggcg ttgatgtcct ggcaaaagtg
     2761 ggtggatttg atttggtcgg aatggctggc gtgatgttag gcgctgcgtc ctgcggttta
     2821 cccgtgttgc tggatggatt tctttcttat gctgctgcgc tcgcagcctg tcagatgtct
     2881 cctgcaatca aaccgtatct cattccttct cacctgtcgg cagaaaaagg agcgcgtata
     2941 gcgctgtcgc atttggggct ggagccttat ctcaatatgg agatgcgttt aggtgagggg
     3001 agtggcgcag ctctggcgat gcccatcatc gaagctgcct gtgcgatata taacaacatg
     3061 ggcgaacttg ctgccagtaa tattgttcta ccggggaata cgacttctga tttgaacagt
     3121 taaaaacgaa aagtctgata aaagctatac ttaacggata gctttcgcga cttaggaaag
     3181 ggacatgatg cgtcgtgtaa atattttttg ctcatttgct ctgctttttg ccagccatac
     3241 tagcctggcg gtaacttacc cattacctcc agagggtagc cgtttagtgg ggcagtcgta
     3301 tactgtaact gttcctgatc acaataccca gccgctggag acttttgccg cacaaaacgg
     3361 gcaagggtta agtaacatgc tggaagcgaa cccgggtgct gatgttttct tgccgaagtc
     3421 cggctcgcaa ctcaccattc cgcagcaact gattttgccc gccactgttc gtaaagggat
     3481 tgtggttaac gtcgctgaga tgcgtcttta ttactaccca ccagacagta atactgtgga
     3541 agtctttcct attggtatcg gccaggctgg gcgagaaacc ccgcgtaact gggtgactac
     3601 cgttgaacgt aaacaagaag ctccaacctg gacgccaacg ccgaacactc ggcgcgaata
     3661 tgcgaaacga ggggagagtt tgcccgcatt tgttcctgcg ggccccgata atcccatggg
     3721 gctgtacgcg atttatattg gcaggttgta tgccatccat ggtaccaatg ccaattttgg
     3781 tattgggctc cgggtaagtc agggctgtat tcgtctgcgc aatgacgata tcaaatatct
     3841 gtttgataat gttcctgttg ggacgcgtgt gcaaattatc gaccagccag taaaatacac
     3901 cactgaacca gatggctcga actggctgga agttcatgag ccgttgtcgc gcaatcgtgc
     3961 agaatatgag tttgaccgaa aagtgccatt gccggtaacc ccatctttgc gggcgtttat
     4021 cagcgggcaa gaagttgatg taaatcgcgc aaatgctgcg ttgcaacgtc gatcgggaat
     4081 gcctgtgcca attagttctg gttcaagaca gatgttttaa gagcgttggt aattagaaag
     4141 caaaaagcct gctagaaagc aggctttttt gaatttggct cctctgactg gactcgaacc
     4201 agtgacatac ggattaacag tccgccgttc taccgactga actacagagg aatcgtgtga
     4261 acggggcgca tattaatggc agtgcatggt gatgtcaaag ggtgaaatgc atttttttgt
     4321 ttgtttgctg tcaatttcaa caaagtggtg agctttcaat cttattgggt aatgaaccat
     4381 cgtggtgcat accctccttt tatagggcag gggaacgcga cagctgatta aaggagcaaa
     4441 tgacgaatct atcataatct cttatttgac agttggttag cttgtacatc aacgccaaaa
     4501 taaaactggc aagcatcttg caatctggtt gtaagtaatg gcggcacttg ggccgattct
     4561 taaaaaccgg aggcaacatg aacttcagac gcctgaaata cttcgtaaaa attgtagata
     4621 ttggtagcct gacccaggct gctgaagtat tgcatatcgc acaaccagcg ctcagccagc
     4681 aggttgccac actggaaggt gagttaaatc aacaactttt gatccgtaca aagcggggcg
     4741 ttacgccaac agacgccgga aaaattctct atacccatgc gcgggccatt ttacgtcagt
     4801 gtgaacaggc ccaactggcg gtgcataacg ttggtcaggc attatcgggg caagtctcga
     4861 ttggctttgc accaggaacc gctgcgtcat ccatcaccat gcccttatta caggcggttc
     4921 gcgctgaatt tccggagatc gttatctatc ccgagcattg ctgaagtgca acgtgcgctt
     4981 tatgacgcca ccaagctggt gagcggcagg cccggtgagg aagtcaaaca gcggctacgt
     5041 actggtactg tggtaaccac agatgacagg aactgggaat tacgttactc agcttctgca
     5101 cttcgtttta acttaagccg ggccgtagca attgatatgg aaagtgcaac cattgccgcg
     5161 caaggatatc gtttccgcgt gccatacggg acactactgt gtgtttcaga taaaccgttg
     5221 catggcgaga ttaaacttcc cggccaggct aaccgttttt atgaaggcgc tatttccgaa
     5281 catctgcaaa ttggcattcg ggcgatcgat ttgctgcgcg cagaaggcga ccgactgcat
     5341 tcgcgtaaat tacgaacctt taatgagccg ccgttccgat aataagttct gaaccttctt
     5401 atcagaaata gatgtgaagg agtaagtaag acacctggca aatagcctgc aataatcgtg
     5461 ggctgtttgc ttccttgggc ggatacgtgt tttattatcg tcttaatgat ttccacatat
     5521 taaaagcaag tatgctttca aaacacaatt ataaaaaatc ccgccaacaa tataagtttt
     5581 tataaaatta aatataagat tatggcttta gaatattttt atttctaata gacgagattt
     5641 ttcctgttat gatataatat gccgaattaa cacatgttaa cgatttacca gtaatgtaaa
     5701 taaattttcg aggagatcat tccagtggga cgtaaatggg ccaatattgt tgctaaaaaa
     5761 acggctaaag acggtgcaac gtctaaaatt tatgcaaaat tcggtgtaga aatctatgct
     5821 gctgctaaac aaggtgaacc cgatccagaa ttaaacacat ctttaaaatt cgttattgaa
     5881 cgtgcaaagc aggcacaagt tccaaagcac gttattgata aagcaattga taaagccaaa
     5941 ggcggcggag atgaaacgtt cgtgcaggga cgttatgaag gctttggtcc taatggctca
     6001 atgattatcg ccgagacatt gacttcaaat gttaaccgta cgattgctaa cgttcgcaca
     6061 attttcaata aaaaaggcgg caatatcgga gcggcaggtt ctgtcagcta tatgtttgac
     6121 aatactggtg tgattgtatt taaaggatca gaccctgacc atatttttga aattttactt
     6181 gaagctgaag ttgatgttcg tgatgtgact gaagaagaag gtaacattgt tatttatacc
     6241 gaacctactg accttcataa aggaatcgcg gctctaaaag cagctggaat cactgagttc
     6301 tcaacaacag aattagaaat gattgctcaa tctgaagttg agctttcccc agaagattta
     6361 gaaatctttg aagggcttgt tgatgccctt gaagatgacg acgatgtaca aaaagtttat
     6421 cataacgtcg caaatctcta attatatatt aaagaaatct gtctttatgg cagatttctt
     6481 taatctcata taatccttat aaaaaatata atgttcaact cgtcatattg cttataaaaa
     6541 atcctcgttc ccagagaaat aatatttatt ataattccag ttcttctttt tctgattaca
     6601 gaaggcaaag tgacaattac gcatagtttc ccgataaaga cgcgacagct acatcccgca
     6661 taaggcattt ttctctttat ccttgtacgg tacttcatgg aacagagttt ttgaccttgc
     6721 gaatcgtgat gtctgttggg gaggggcaat ttgctcactg aagcgtgaga ctcgattaag
     6781 cgcacgaaac acagaaatca aaaatcccgg gcactttttt acaaggtaac cgggtaaaaa
     6841 taatttttat tttttaactg ttttgagact catagagatg tctcaaaact aaaatttggc
     6901 tcctctgact ggacttgaac cagtgacata cggattaaca gtccgccgtt ctaccgactg
     6961 aactacagag gaatcgtgag aacgaggcga atattagcga tgcccaccca caatgtcaaa
     7021 gcctgttatt taaatttgaa atcgtttgct gaaataatct gcattttgtc gtttattccg
     7081 acacaactgg ctttttttca cacttttgcg gttcggatcg agggtatttc cacagccaac
     7141 gtccagtaac cattcgccag taaaacagca cggcccgcac agcccagtcg gcaaacattc
     7201 ccatccagac accaaccaca ccccagccaa gcatgatgcc cagcacataa ccgacgacaa
     7261 cccggcaacc ccacatgctc aacatagaaa cccacatggc gtaacgggca tcgcgagcac
     7321 ctttaaatcc agcgggtagc ccccatgagg cggaccaaat aggcataaat aaagcattta
     7381 gccaaatcag aatcacaacg acatgtttaa cctgtggatc ctgggtgtaa aacgatgcca
     7441 taaccccggc aaagggagcc gttagccagg cgatggccgt taatccaaga gtggaaagcc
     7501 agaacacatg ccgcaactga atctctgctt gcgctatctg ccctaccccc aaccttcggc
     7561 ctgtaatgat cgtagaagca gagccgagcg cacttccggg taagttgata agagccgcaa
     7621 ttgaaaacgc gataaaattt ccggcaataa cactggtccc catcccggca acgaacattt
     7681 gggttaataa ccgaccactg gtaaataaca ctgattcgac actcgcggga ataccaatcc
     7741 ccatgacttc ccagataatg ctaaaattca gcggtttaaa atagctcttt aacgaaatcc
     7801 ttagcgcagg attaaaacca atcgccagca cccacaaaat tgcaactgcg ccaatataac
     7861 gagaaatggt taaacccagc cctgccccga caaatcccag tcccggccag gagaaaaggc
     7921 cgtaaatcaa tatgccgcta ataataatat taagaatatt caggctaccg ttaatcaata
     7981 gcggtatttt cgtattccct gcaccacgaa gtgccccgct accaataaga gtgatggcag
     8041 ctgctggata actgagtacc gtcagctcca gataagtcaa cgccagtact ttaacttctg
     8101 tcgtggcatc acccgcgacg aaatcaataa tttgttcgcc aaaatgatga ataagcgttg
     8161 ccaacagtac ggcaaacaac gtcatgatca ccaatgactg ccgcgtcgcc accctcgctc
     8221 gtcgtcgatc ccgcttaccg agactaaatg ccacaacgac agtagtacca agatcgatag
     8281 cagcaaaaaa agccataatg accatattga agctgtccgc caatcccacg ccggccatcg
     8341 catcttttcc cagccagctg accagaaaag tgctcagaac ccccatcaac aggacacagg
     8401 cattctccat gaagatagga acagcaagcg gggttatctc gcgccagaac aacactttgt
     8461 agctcttgcg tttagcgtgc cagcgagtgc cgtgaacaac ctggcgtaaa gcagaggaga
     8521 tattcaaagc cgaccttaat tgcagaaagt gaaaccacat ttcaaataat gagggagaat
     8581 cagcaaagct gcaaagattt tcgccaacaa attgtctgca aatgcaacaa actgttgata
     8641 gaaacggcaa acagttgggg aatttaaaaa tcgggtttga caaaagattt ttcgccgtta
     8701 agatgtgcct caacagcgat tcctctgtag ttcagtcggt agaacggcgg actgttaatc
     8761 cgtatgtcac tggttcgagt ccagtcagag gagccaaatt ccgattctta cgctatctta
     8821 ttagtcctta tttgatattg attcaataag ttagcgtgaa aatctttcca gatgtgtatt
     8881 cagttttccc tccgcatccg gttaatttgg tggtcagatt tgggggcagg ttggttcgat
     8941 tctggagtga cccccaaatg tctttaaacg attcaaaaat ccgtaactta aaaccctctt
     9001 caaaacccgt aaaactgtct gattcgcacg gtctgtatct gctggtcaat cagggcggtt
     9061 cgcgtatctg gtatctcaag tatcgcttca gtggtaaaga gtcccgcgtc agtctgggcg
     9121 catatcctct ggtttcactt gctgaagcaa gacaacgacg tgacgatatc cgtaagctac
     9181 tgacgcagaa tattaacccc gcccaccagc gcatgtctga taaagccgca gcgtcaccgg
     9241 aaaagtattt taaagccgtg gcgcttgcat ggcacaaaac caacaaaaaa tggtcgcctg
     9301 attatgccgc gcgcatcctc gccagcatgg aaaatcatat ctttccggcg attggtcatc
     9361 tgcctgtcac tacgctgaaa acgcagaatt tcactgcgtt actgcgggtt attgaggata
     9421 aaggttttct ggaagtcgcg tcccgaaccc ggcagcaact ctgcaacatc atgcgttacg
     9481 ccgtacagca gggattcacc gaaaacaacc tggcgcagca tctggaaggc gtcaccgcgc
     9541 cgccggttaa gaatcactat cccgccctgc cgctggagcg gttgcccgaa ttgtttgagc
     9601 gcattggcga ctatcagcag ggacggcagc ttacgaggct ggcggtggtg ttgactctcc
     9661 acctgtttat ccgttccagc gagctgcgct ttgcccgctg gggtgagata gatttcagaa
     9721 acaaaatctg gaccatcccc gccacaaggg aagcgattga gaaagtccgt ttctctggcc
     9781 gtggcgcaaa aatgcgtact ccatatatag tgccgctttc tcgtcaggct atcgccattc
     9841 tgaagcagat aaaggaaatc tccggccatc tggaactggt gttccccggc gaccataacc
     9901 cgtataagcc gatgagcgaa aacactgtca accgggcgtt gcgtcttatg ggctatgata
     9961 ccaaaactga tgtctgtggg catggattcc ggacaatggc gtgtagcgca ttagtggaaa
    10021 ctgaactctg gtcacgggat accgtggagc ggcagatgag tcatcaggag cgcaacagcg
    10081 ttcgggcagc gtatatccac cgggctgaac atctcgacgc ccgtacagcc atgatgcagt
    10141 ggtggtcgga ttatctggat gtaagtcgcg aggggtacgt tgcgccgtat atttatgcgc
    10201 ggcggcataa ggcggcctga gacagtggct atataatttg ttaaaaatga aaaagcagat
    10261 cctgattgaa tccggatctg ctttttacat taggcaatcg ctgccagaca atctgcacca
    10321 gaaacgccat aactgcacca gttcagtacc accgcttacc tgcgccagtc tgccgtcgcc
    10381 tgtctgtgtc aggactgcgc cagatcttat cgaataaaca tcaaactgcg ccagtgttac
    10441 ggccctttca gccctttggc cttttccggt ctggcgctgt tacccttagc cgccccttac
    10501 cctttccggc ctttttcctt tgctggcgca atcgccagaa aaatcgtcaa gctgcaccag
    10561 aagcctgcca ataggtcata ccgttcagaa gcatcgttat tgagaggaaa ccgtacaaaa
    10621 aatttctacg tagaaatttt ttcggtggat aacgatgaat aaagagtatt ttataatgtg
    10681 atggctatca aaaatcgacc atccaaaaat aattcattgt tcattgattt ataatgaata
    10741 accatgaatt taatagtcga tgattattgt ttttatcagt attgatagga aagtatacaa
    10801 aaaattttgg ccccaaaatt ttttgtacga aaaccgatga ataacgcgaa attaatagga
    10861 aaccatccaa aattatttgg ggcaaataat tttgcccgaa aaccgatgga taactcgatc
    10921 ttttcaaagc aacggctatc aatcagtatc ctttcttccg taaacctgcg ccacataccg
    10981 cccgcgcccg tcgccgtgtc ccaaatccat cgccgtcatt gccagcgctt ctttctcact
    11041 gaatccctgc gccagataat gacgaatggc atcctgcgcc cacgcatagc gcaacgagtg
    11101 cggggaatat gtgccagtta acccgagacg tgacgcctgg ctgtgccagt atttcatcgc
    11161 gcttttcagg tcgggtttat ctatcagcct gccgtggcga tcttctgcca caaccaacgc
    11221 attatccagc gcttttctga tagcgacagc atccagaata acggtttctc gcggacgccc
    11281 gcctttggtg ccgaacacca cggttaaacg gggctcaccc cgctccagcg attgcttcca
    11341 cgttcttaat gactgcgcac tttgcaccac ctcctgcgaa cgtaatccca tcagccttga
    11401 gagttccagc gccgctgcca tc
//
LOCUS       DAJVSY010000137        11406 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.137, whole genome shotgun sequence.
ACCESSION   DAJVSY010000137 DAJVSY010000000
VERSION     DAJVSY010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11406
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.137"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..921
                     /gene="gap"
                     /locus_tag="OQQ19_003236"
     CDS             <1..921
                     /gene="gap"
                     /locus_tag="OQQ19_003236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HCS1804758.1"
                     /translation="DVVAINDLTSPKILAYLLKHDSNYGPFPWSVDFTEDSLIVDGKS
                     IAVYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPAGEMKTI
                     VYNVNDDTLDGNDTIVSVASCTTNCLAPMAKALHDSFGIEVGTMTTIHAYTGTQSLVD
                     GPRGKDLRASRAAAENIIPHTTGAAKAIGLEIPELSGKLKGHAQRVPVKTGSVTELVS
                     ILGKKATAEEVNNALKQATTNNESFGYTDEEIVSSDIIGSHFGSVFDATQTEITAVGD
                     LQLVKTVAWYDNEYGFVTQLIRTLEKFAKL"
     gene            complement(963..2403)
                     /gene="aldA"
                     /locus_tag="OQQ19_003237"
                     /pseudo
     CDS             complement(963..2403)
                     /gene="aldA"
                     /locus_tag="OQQ19_003237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310048.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
     gene            complement(2558..3400)
                     /locus_tag="OQQ19_003238"
     CDS             complement(2558..3400)
                     /locus_tag="OQQ19_003238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001027928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HCS1804759.1"
                     /translation="MNITPFPTLSPATIDAINVIGQWLAQDDFSGEVLYQADCVILAG
                     NAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATIL
                     ADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALFNQAVERVHTAIVVQDPTMQRRTM
                     ATFRRMTGDNPDAPRWLSYPGFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPR
                     LRDDSDGYGPRGRDFIVHVDFPAEVIHAWQTLKHDAVLIEAMESRSLRQKLPVCEPLV
                     CKRA"
     gene            complement(3672..7574)
                     /gene="hrpA"
                     /locus_tag="OQQ19_003239"
     CDS             complement(3672..7574)
                     /gene="hrpA"
                     /locus_tag="OQQ19_003239"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310042.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HCS1804760.1"
                     /translation="MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQ
                     AIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGET
                     GSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRF
                     SDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLP
                     RRPDLKIIITSGTIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ
                     AIFDAVDELSQESPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNR
                     VFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQAS
                     ANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAA
                     FPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLE
                     AQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWNYLG
                     EQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHI
                     ALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGR
                     IAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQI
                     DPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEF
                     YDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGN
                     LKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPV
                     RRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKIT
                     FRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYE
                     QKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEK
                     LPNKAKLGLYFNPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEKVRAELN
                     DTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFK
                     RLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVK
                     EIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG"
     gene            7775..8380
                     /gene="azoR"
                     /locus_tag="OQQ19_003240"
     CDS             7775..8380
                     /gene="azoR"
                     /locus_tag="OQQ19_003240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent NADH-azoreductase"
                     /protein_id="HCS1804761.1"
                     /translation="MSKVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLA
                     ANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNIS
                     TQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTF
                     LGFIGITDVKFVFAEGIAYGPEMAAKAQSDAKAAIDSIVAA"
     gene            complement(8431..9747)
                     /locus_tag="OQQ19_003241"
     CDS             complement(8431..9747)
                     /locus_tag="OQQ19_003241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310040.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2/dual specificity phosphatase
                     family protein"
                     /protein_id="HCS1804762.1"
                     /translation="MITERRNVLLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDI
                     PSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRLVHRLILATVMACCG
                     FLLYPLKFSFIRPEVSGVTGWPFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAER
                     WRKVCGGWFLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIK
                     IALPYVVGAGSCIVLMELMVMIQLWWPVWLCWPVLSLLIIGRGYGGLGAITTGKDSQG
                     KLPPAVYWLTLPWRIGMWLSMRWFCRRLEPVSKITAGVYLGAFPRHIPAQNAVLDVTF
                     EFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSA
                     LVVAAWLLCYGHCKTVDEAISYIRARRSHIVLKEDHKAMLKLWENR"
     gene            complement(9737..11406)
                     /locus_tag="OQQ19_003242"
                     /pseudo
     CDS             complement(9737..11406)
                     /locus_tag="OQQ19_003242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415928.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional alpha/beta hydrolase/class I
                     SAM-dependent methyltransferase"
BASE COUNT         2844 a         3098 c         2713 g         2751 t
ORIGIN      
        1 gacgttgtcg ctattaatga tctcacttcc ccaaaaattc tcgcctacct gctgaaacat
       61 gattcaaact acggaccatt cccctggagc gttgatttta cggaagattc acttatcgtt
      121 gatgggaaaa gtatcgcggt ttacgccgaa aaagaggcta aaaatattcc gtggaaagcg
      181 aaaggtgcag aaatcattgt cgaatgtact ggcttttata cctccgccga gaaatcgcag
      241 gcgcatcttg atgctggtgc gaagaaggtg ttgatttccg cccctgccgg tgaaatgaaa
      301 actatcgttt ataacgtcaa tgacgacact ctggatggca acgacaccat tgtttccgtg
      361 gcgtcatgca ccactaactg tcttgcgccg atggccaaag ccttgcatga cagtttcggg
      421 atagaagtcg gcacgatgac gaccattcat gcctatactg gcacccagtc actggtggat
      481 ggcccacgtg gtaaagattt acgtgcttca cgcgcagcgg cagaaaatat cattccccac
      541 actacggggg cggcaaaagc cattggtctg gagatcccgg aactgagcgg caaactgaaa
      601 ggtcatgcgc aacgcgtgcc ggtgaaaaca ggttcggtca ctgaactggt atcgattctc
      661 ggaaaaaaag cgactgccga agaggtgaat aacgcactta aacaagcaac caccaataac
      721 gagtcatttg gttataccga tgaagaaata gtctcttccg atatcattgg cagccatttc
      781 ggttcggtgt ttgatgccac gcaaacggaa attaccgccg tgggcgattt acaactggtg
      841 aaaacggtcg cctggtacga taacgaatat ggcttcgtca cgcagcttat tcgcaccctc
      901 gaaaaattcg ctaaactctg acgcgcacag gcggaggaaa aaacctccgc ctcttttact
      961 cattacgact gtaaataaac cacctgggtc tgcagatatt catgcaggcc atgtttacca
     1021 tctgcgccgc caataccgga tttacgccat ccggcgtgga agccttgcat agcttcgaag
     1081 ttttcacggt tgatgtaagt ttcaccaaac ttcagccctt taatggcttt catcgcgacg
     1141 ttcagatttt gggtatagat ttgatgaggt caggccgtaa tcactgtcat tagccattga
     1201 gatagcctct tccagcgtgt caaatgcgac caccggcaga accgggccaa aggtttcctc
     1261 atgcataatc gacatttcct ggcgaacatc cagcagcaat gtcggcggat aataatatcc
     1321 tttcccctct accgctttgc cacccaacgc cactctcgcc ccttcttcta ctgcgcgcgc
     1381 cactttttgc tcaacccttt ccaacgccgc ggcgttaatc aacggcccca tcgcaatgtc
     1441 gttgcgttca gcggggttac caaattgaac cgcctgcatc gcttcaccca gccgattgac
     1501 gaactgatca taaatgcctt tctgtacata aacacgttct gcacagttac acacttgccc
     1561 actattaatg acgcgtgaat caacgatggc tttgactgcc agttcaagat cggcatcgtc
     1621 cattacgata gctggtgctt taccccccaa ttccagacac actttggtga tgtttttcgc
     1681 cgcagtcgcc atgatcttct cacctgcaga gacgctgcct gtcatactga ccattgcgac
     1741 ctttgggtta cccgccagtt cttgcccaac ggtttcacca cgccccagta caaggttaaa
     1801 cacgccgcgc ggaaggccta tttcatcgac gattttggcg aatgcaatcg cattgtttgg
     1861 cgtaaattca ctaggtttaa tgacgatggt attaccggtc aaaagagcgg gagccatttt
     1921 gcgggcaatg aggaagaacg ggaagttcca cggcagaatg ccggtagtca caccaagcgc
     1981 acgtttaaac aaaagaatat tttctcctgg acgatcgctt tgaataatct cgccctcgta
     2041 acgccgtgcc cactccgcca tgtaatcgat atagtcggca gtaaaagcca cttcgacttc
     2101 agccagctgc tggatcttgc ccccttcttc aacaatcagc gcactgattt cactggcgcg
     2161 ttcgcggatc ccggcggaga ttttgcgcaa ccaactggcg cgttcaatag caggcaacgc
     2221 ttcccattct ggttgtgcac gttctgctgc atcgattgcc ttacgggcat cctcggcctg
     2281 accatcgggt atgcgggaaa tgacagcctc tgtagcaggg tttaccacat caatccatgc
     2341 gtctccacgc caggtaacaa actgtccatc gatatacata ggatgttgaa cgggtactga
     2401 catgggcgac tcctgtgatt tatatgtttg ttcttggtaa atacattgtt aattaacatc
     2461 aatcatcata gagacggcat cgtgaaagga caattctgtg aagggcttca taaaaacaag
     2521 tgtaaaagga ataaaaggca gaaataaaag tcaggagtca tgcccgtttg caaacaagtg
     2581 gttcacaaac gggcaatttt tgacgtaacg agcgactttc catcgcctcg atgagcaccg
     2641 catcgtgttt aagcgtttgc catgcatgga tgacttctgc cggaaaatca acgtgaacga
     2701 taaaatctcg cccgcgggga ccgtagccat cgctatcatc gcgtaaacgc ggcagctcgc
     2761 cagtgagtag tgagagataa cgctcaaccg gccataatcc ttgtaactga ttaataaaga
     2821 ttacactgtc tgcgttattt cctaactgag gaacgaatcc gggataactt aaccagcgtg
     2881 gcgcatcggg attgtcccca gtcatacggc ggaacgtcgc catcgtgcgc cgctgcatgg
     2941 tggggtcctg aacaacgata gccgtatgaa ctcgttctac ggcctgatta aatagcgcga
     3001 tgctaaagcg tgcgttttca ccgcagtttg ttgactggtc ttcaatccag attttttcat
     3061 gcggaatgtg ccagaactga tgagcgatat ccgccaggat ggtcgcttct gctctgccag
     3121 tggtgcggat agtgttgtag tgcggatgct gtgcgatggc gctatacaaa aaagttgtcg
     3181 agtgaccgat accaccacta atcagtaaag gaatttgctg atcgcgagca atcttacatg
     3241 ccgcgtcgat agtcggcata accgcattgc ctgcaaggat cacgcaatcg gcctgataca
     3301 gcacctcacc ggagaaatca tcctgcgcca gccactgtcc gataacattt atggcatcta
     3361 tagttgccgg cgaaagcgtc ggaaacgggg taatgttcat ggttcctcct tatcgttccc
     3421 ttaagaatac tgcgtgagat aatagtgaga agctgagcac tctgaaagga ggaagtcgta
     3481 tgtccttaac cgccactccg caagcctgac atatctttta aggaaatgct gtagataaac
     3541 attattcatc ttgcagcaga gaattgtatt tttctgaatt cctgaatttt tacccttacc
     3601 gttttagaat taataaaaaa cccggcgcta aatgcttacc gggttttaga tttattaggc
     3661 aaatagcagg gttaaccgct aatctgctcc atcgcctgca aaatacgctt atctgaaatc
     3721 ggataaggcg taccaagttg ttgagcgaag taactaacgc gcagctcttc tatcatccaa
     3781 cggatctctt tcacgtcttc atcctcacga cgtgcaggcg gcagtttgtt gatccattgc
     3841 tgccacgcct gctggacgtt ttcgactttc agcatctgtg cacgatcgcg atgtggatca
     3901 accgccagtt tttccagtcg tttttcaatc gcctgcaaat atcgcagcgt gtcgcccagc
     3961 cgtttgaagc cgttaccagt gacaaaaccg cgatatacca acccgcccat ctgcgcttta
     4021 atgtcagaaa gccccagtgc catggtcata tccacccgcc ctttcagacg tttgttgata
     4081 ttgaacactg ccgtaagaat ttgctcgacc tgcttcgcaa tatctaccac cgtgtcgttc
     4141 agttcggcac gcactttctc atgcagcgca gcaaagcctt cttccgtcca gaccgggcca
     4201 ccattggcgt cgatcagttg atccacaccg caggagatac agtcgtcgat cagctccagc
     4261 actttgccat acgggttgaa gtacagtccc agcttggctt tgttcggtaa cttttcatgt
     4321 aaatacttga tcggcgaggg aatatttagc agcagtagac ggcgaagacc attccacatt
     4381 gcctgttttt gctccagcgg gttatcaaac agtttgatcg ccacgctgtc gcgttcatcc
     4441 accagcgccg gccacgcctt cactttatag ttgccacgct tctgttcgta actttccggc
     4501 agctgaccaa aactccagat atgtaagccg ctctgctcga taccgtcatc cgccaccgcg
     4561 gacagcgttt cctgcacttt gcctttcagc gcatctttca gatcttgtag cgagcgccct
     4621 tcttttagct tcttgttttt gtcatccacc acgcggaagg tgattttcag gtgatcgggc
     4681 acctgatccc agtgccagtc ttcgcggtca acggtaacgc cggtcatccg ccgtaactcg
     4741 cgctcaaggc tgtcgagcaa cggtaactcc agcggtgtga cgcggcctaa aaacgcttcg
     4801 gcgtagtttg gtgcaggcac aaaattacgg cgtaccggtt tcggcaacga tttaatcaga
     4861 gcaatcacca attcgcggcg cagaccgggg atctgccatt caaacccgct ttcctcaacc
     4921 tggttaagta acggcagcgg aatatgtacg gtcacaccgt ccgcgtctgc gcctggctca
     4981 aactgatagc tcaaacgcag cttgagattg ccctgatgcc agaagttcgg gtaatccagc
     5041 ttgctgattt tttccgcccc ttctttgatc aacatgctct tttcaaagtt gagcaaatca
     5101 ggcgtttcgc ggctgacttt tttccaccag ctatcgaagt gacgagcgga gattacatcg
     5161 tggctgatgc gctggtcgta gaactcaaac agcgtttcgt catcaaccag aatatcgcgg
     5221 cgacgtgatt tgtgttccag ctcttccact tcggcccgca gtttcaggtt ttcacggaag
     5281 aatgcgtgac gcgtctgcca gtcaccttcc accagcgcat ggcgaataaa gagttcacga
     5341 cataacgccg gatcgatctg gctgtagttg accttgcgcg cggcaacaat cggcaaacca
     5401 taaacagtga ctttttccgt tgccatcacc gcgccctgcg cccgttccca gtgcggttcg
     5461 ctgtaggtac gtttaatcaa atgctgagcg acaggctcca cccattccgg gtcgatacgc
     5521 gcagcaatgc gcccccacag gcggctggtt tctaccagtt ccgccaccat tacccatttc
     5581 ggcggttttt tgaataaacc agaaccgggg aagatggaga aacgcgcgtt acgtgcgccg
     5641 gtatattctt gtttatcggc atctttcatg ccgatatggg aaagtaaacc cgtcagcaac
     5701 gcaatgtgaa tttcgcgata ctccgccggt tcgctgttaa ccggaatgcc aagttctttc
     5761 accacctgac gcaactgggt gtagatatcc tgccattcgc gcacgcgcag atagttgaga
     5821 taatcggtac gacacaggcg acggaaggcg tttgaagaaa gcgccttttg ctgctcgcca
     5881 agataattcc acagatttac aaacgcgagg aagtcggatt ctttgtcgtg gaagcgacga
     5941 tgtttttcgt ccgatgcctg ctgtttgtcc atcggccgct cacgcgggtc ctgaatggag
     6001 agcgcggacg tgataatcat cgcctcacgc acgcagccat gtttctgcgc ttccagcacc
     6061 atacgcgcca gacgaggatc gaccggcagt tgcgagagct ggcgaccgag cggcgtcagt
     6121 ttataggcgc tggcctgttc atccgtggtg atcgcgccca gttcttcgag cagacgcacg
     6181 ccatcctgga tattgcgttt atccggtgct tcgacaaacg ggaacgcagc gatatcgccc
     6241 agccccagcg cggtcatctg caaaataacc gaggccaggt tggtacgcag aatctccgga
     6301 tcggtaaact ccgggcgcga gaggaaatcg tcttcggaat agagacgaat acagatccct
     6361 tcggacacac gaccacaacg gcctttacgc tgattggcag acgcctgtga aatgggttca
     6421 atcggcaaac gctgcacttt ggtgcgatag ctgtagcggc tgatacgcgc cgtaccgggg
     6481 tcgataacgt atttaatccc cggtacagtc agcgaggttt ccgcgacgtt ggtcgccagc
     6541 acaatgcgtc gcccgctgtg cgactggaac acgcggttct gttcgctatt cgaaagccgc
     6601 gcataaagcg gcaagatttc ggtatggcgt aagttcagct tgttcagcgc atcggcggta
     6661 tcgcgaattt cccgctcgcc gctcataaag atcagaatgt cgccagggct ttcctggctc
     6721 agttcgtcta cggcgtcaaa aatcgcctgc aactgatcgc gctcggtgtc atcggcttct
     6781 tcaacaatcg ggcgatagcg cacttccacc ggataggtcc gaccggagac ttcgataatc
     6841 ggcgcattat taaagtggcg agaaaagcgt tccgggtcga tagtcccgga agtgataatg
     6901 atttttaggt caggacgccg cggcagcaac tctttcaaat agccgagcag aaaatcgata
     6961 ttcaggctgc gttcgtgtgc ttcgtcaata atgatggtgt cgtactgcat cagcaggcgg
     7021 tcttgctgga tctccgccag caggataccg tcggtcatca gcttgaccat cgtgttatca
     7081 cttacgtgat cgctgaaacg cactttgtaa ccgatgcaac cgcctggctc cgttttcagc
     7141 tcttccgcaa tacggttcgc caccgttctt gccgccagac gacgcggctg ggtatggccg
     7201 atcagtcctt taatcccgcg ccccagctcc atacagattt tcggtagctg ggtcgtttta
     7261 ccggaaccgg tttccccggc gacgatcacc acctggtgat cacgaatcgc ttcgagaata
     7321 tcctgttttt tctgactaac tggcaaattg tccggataag tgatttccgg tcgtgccgct
     7381 tcacgcagca ggactttccc tgccgcctgg tcaatctctt tcgccatctc ctggaaaatg
     7441 gcctgttgtg catcaggatt tttaaccttc ttaacaccat gcagacggcg agaaaaacgc
     7501 agtctgtcgc gcagcatcaa cgaatccagc cgctgctgca aagcagtaaa ggtcaatttt
     7561 tgttgttctg tcataacgtt agtgggcagt agtctgcctg attaattttc ttttaaatga
     7621 tagatataga gtaccacatc gcggctttct atgcgttgtt caataaattc gaacataggc
     7681 ttcgatttat tgcgctatct ctgtggcagg attgtgaata aagtgtcagc aagcaacggg
     7741 gcatcgccaa ttcaaacatc tataaggaaa caccatgagc aaggtattag ttcttaaatc
     7801 cagcatcctg gcagggtact ctcagtctaa tcagttgtcc gattattttg ttgaacaatg
     7861 gcgcgaaaag cactccgctg atgaaatcac cgttcgcgac ctggctgcaa atccgattcc
     7921 ggtactggat ggcgaactgg ttggcgctct gcgtccgagc gatgcgccgc tgactccgcg
     7981 tcagcaggaa gctctggcgc tttccgatga gctgattgcc gagctgaaag cccacgacgt
     8041 tatcgttatt gcggcaccga tgtataactt caacatctca actcagttga aaaactattt
     8101 tgacctggtt gcacgcgcag gcgttacttt ccgctatacc gagaacggtc cggaaggtct
     8161 ggtaacgggt aaaaaagcca tcgttattac cagccgcggt gggatccaca aagatggacc
     8221 aacggacctg gtgacgccgt atctgtccac gttcctcggc tttatcggca ttaccgatgt
     8281 gaaatttgtc ttcgccgaag ggatcgcata cggtccggaa atggcagcga aagcgcagtc
     8341 tgacgcgaaa gcggccatcg acagcattgt tgctgcataa ccggacacga tcttgatgtg
     8401 gactgtagtt cagtccacat ctcaatccac ttacctgttt tcccataatt tcagcatcgc
     8461 tttgtgatct tccttaagca caatatgcga acgtctggct cgaatataac taatcgcttc
     8521 atcaacggtt ttacagtgtc cgtaacataa caaccatgcc gccactacca gcgcactgcg
     8581 cgataatccc aacgcgcaat ggaccagaac gctgccttgc tcttcgcgta atgtttccag
     8641 catcgccacg gcctgtcgga gctccccctc ttccggaacc accagatcca gcatcggtac
     8701 acagaaatag agtcgatctt ttgtcgctcg tccccgaggg aattcaaagg tgacgtccag
     8761 aaccgcattc tgtgccggaa tatgtcgtgg aaacgcccct aaataaacac cagcagtaat
     8821 tttgctcacc ggctccaggc gacgacaaaa ccaacgcata gacagccaca tcccgatgcg
     8881 ccagggcaat gtcagccagt aaacggcggg cgggagtttc ccctgactat ctttccctgt
     8941 tgttatcgcg ccaagcccac cgtacccacg gccaataatg agtagcgata atactggcca
     9001 acataaccag actggccacc ataactgaat catcaccatt agctccatca acacaatgca
     9061 cgagcccgcg cctacgacat atggcagtgc tattttgatt cgacgttgat caggtttctg
     9121 ataattccaa cgacgatcga cgggcaccat ccagtcaatc aacataccta ccgccagccc
     9181 tgtgatgaca tcaataaaat gatgctgcca ggtcgtcaga gtagaaatag cgatgagtaa
     9241 aaaccatccg ccacagactt tacgccacct ctcagccaga tgctgacgaa agtgacgcca
     9301 aagtagccag cagagaataa tatgcagcga aggagactgg ttataaggca gatcaaacag
     9361 ttcaagttgc gaaaatggcc atcccgtcac cccactcact tcaggacgga taaaactaaa
     9421 cttcagcgga tagagcaaaa aaccgcagca ggccattacc gttgccagaa taagccggtg
     9481 gacaagtcgg cgctgttcga atgtcgtgct acaaacgaac agcgaaaatc catataaaag
     9541 atccagactc cagtaaggaa caatagtcca gggaagaaaa gggatcgccg tttcccaacc
     9601 gaatacctga ctggggatat catggctgtt aaggtcctga accgcggtga actgattaag
     9661 agatccatag gtgaagaaaa aaaacggggc cagcaacaat aaccagccag cgccttgtag
     9721 caatacgttc cgacgttcag ttatcacgac gcaccgccat cgaaaccgta aaaatacccc
     9781 actcatcaat ccgttgtgtg catttatcaa atccggcatc acgcacgagt gaatccatct
     9841 ccccttgcga acgcacgcgc attacccacg gtttaccatc tttatgactg gttaacaccc
     9901 cggcaatcat ctccagttga gggtgccacg gctgcccggt gtagatgaga atgccgaccg
     9961 gttcgatggc attggcaaga cctgcgagtg agttttttac ctgctcattt tcgggaaaaa
    10021 gctcatacag tccagagaca attgccagcg taggccgcgg agttaacgcg ctgagttcct
    10081 ccgggttaaa cgcatcgccc tgttcaaaac gcacccgccc agacattccc cgttgggcaa
    10141 tcatctcttg cccctgtgca acatttaact cgctgtaatc acgtaacaaa atatcgctta
    10201 cggcaggctc gtttgccagc gcatccagta catagcgccc atgccctgcg gcaatgtcaa
    10261 ccacgcggac ggctaaacct ttggcgtgga gatcggcaac ggcttgttta atcagtattt
    10321 gtaaatgggt tttgcgctgg cgaataccgc gccagccaac actgttcagg tagattttgt
    10381 cgattaagcg cccgaatgcg ttactacctt gcggttgatt ttgatagaca taatccagcg
    10441 aactgcctga atcaaagccg gtgctcattc cgagatgcag gcccgcagag tgcgtcccga
    10501 acaatttcat cgcctttcgc ataaagcgat acgctaaatc aaccggcgat aatagcacgg
    10561 gtccaccaga aagtagccgc cattgatccg ctgatggtcc tgtgcagtct tcatgctgat
    10621 aatcaaattt ttgcgatttg ttagcatata aacgactaat aaagctttgc attttttcaa
    10681 atgccagcgc cctgttctct tcacccaacg tgtcgtgata aaagcctggc agcagatgca
    10741 gctctttcag agggctacgt aatctctgat aaaaatcaat ctgcggttgg cgatgcacca
    10801 catagtcatc acctgatatc agaagttgcg tggggagcgt aatcgccgcc gcatctctaa
    10861 taatacgttc agacgtttta tagagatcga gcaagatatt gacggcaatc gcccgtgtga
    10921 tcagcggatc attattgaaa ctcgccaccc gttgccgatc gtgggtcaaa tagcgtcctt
    10981 tcacatagga attaataaaa aacagaccac gcagacgatg ccataacgcc agcgcaggac
    11041 gtgccagcgg cacatacaat ttaaccttaa aggccggaga agccagcacc agcccgcgaa
    11101 ttgcaggcgc ataatcatga acctatgtgg caaccagcac tgcgccgacg ctttgcgcga
    11161 tcacaaccac ctcttccagt ccaacctagc tgtcgctggc agcaaaacgg acaaattcat
    11221 cgacatcctg cactgaacgc gcaagagatg ggctataacc acgcggcccc gaagtttttc
    11281 catgcccccg agcatcccat gcataaaaag cagtatctgg catcgccagt tcatcaacga
    11341 tatgttgtag acgaccagaa tgttcatggc cacgatgaaa taagacaatg acctttttcg
    11401 cccctg
//
LOCUS       DAJVSY010000138        11000 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.139, whole genome shotgun sequence.
ACCESSION   DAJVSY010000138 DAJVSY010000000
VERSION     DAJVSY010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11000)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11000)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11000
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.139"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(1..109)
                     /locus_tag="OQQ19_003243"
                     /pseudo
     CDS             complement(1..109)
                     /locus_tag="OQQ19_003243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000198547.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            386..1261
                     /locus_tag="OQQ19_003244"
     CDS             386..1261
                     /locus_tag="OQQ19_003244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001224622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HCS1804763.1"
                     /translation="MRKFILISMITLASVSLGACRQNATIKQDAPGQKAFLIDGQIYD
                     LHSGKIISSSELLADLATARHLIIGEKHDNAEHHQIELWLIQNLLIQRPQGSVLLEML
                     TSDQQPRVNQVKCWLKDNPVVRDSRVQELLNWQKGWSWEMYGDIVMQLLRGPYPLLNA
                     NIGREQMLALYKKNEFPKGKKSTAPVVQEALRETIIAMHEGNLESQQLTSMLSVQQQR
                     DRYMARQLLSAPVPSLLIAGGYHASKNMGVPLHMEDLATGTHPVVLMLAEKGMNITVD
                     HADYVWFVAPDTTKR"
     gene            1269..2045
                     /locus_tag="OQQ19_003245"
     CDS             1269..2045
                     /locus_tag="OQQ19_003245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000981087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HCS1804764.1"
                     /translation="MMNILHFPQSVKWSSWFICSLLLHGLIFLTFIWRFSEVQPAMSP
                     APAIMLQWAEIIEAPSSPLSLPVGIAQQESAVTEEKQQTEDRQQRPVTEDSDATIEIT
                     RKKKSSDGEKKKTRPPRKIKAQTSDSNPTAVSSNAAPQALVESSRIAAPFNSDSTKRD
                     NSEASWESRVKGHLNRYKRYPGDARKRARTGTAVVTFTVNTEGTIVSSFLEISSGTLS
                     LDREAIAVLERAQPLPKPPPEILEGGLFKVKMPITFKLKE"
     gene            2214..4475
                     /locus_tag="OQQ19_003246"
     CDS             2214..4475
                     /locus_tag="OQQ19_003246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001100765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCS1804765.1"
                     /translation="MNVIKLAIGSGILLLSCGAYSQSISEKTNSDKKGAAEFSPLSVS
                     VGKTTSEQEALEKTGATSSRTTDKNLQSLDATVRSMPGTYTQIDPGQGAISVNIRGMS
                     GFGRVNTMVDGITQSFYGTSTSGTTAHGSTNNMAGVLIDPNLLVAVDVTRGDSSGSEG
                     INALAGSANMRTIGVDDVIFNGNTYGLRSRFSVGSNGLGRSGMIALGGKSDAFTDTGS
                     IGVMAAVSGSSVYSNFSNGSGINSKEFGYDKYMKQNPKSQLYKMDIRPDEFNSFELSA
                     RTYENKFTRRDITSDDYYIKYHYTPFSELIDFNVTASTSRGNQKYRDGSLYTFYKTSA
                     QNRSDALDINNTSRFTVADNELEFMLGSKLMRTRYDRTIHSAAGDPKANQESIENNPF
                     APSGQQDISALYTGLKVTRGIWEADFNLNYTRNRITGYKPACDSRVICVPQGSYDIDD
                     KEGGFNPSVQLSAQVTPWLQPFIGYSKSMRAPNIQEMFFSNSGGASMNPFLKPERAET
                     WQAGFNIDTRDLLVEQDALRFKALAYRSRIQNYIYSESYLVCSGGRKCSMAEVIGNDW
                     EGISDEYSDNMYIYVNSASDVIAKGFELEMDYDAGFAFGRLSFSQQQTDQPTSIASTY
                     FGAGDMTELPRKYMTLDTGVRFFDNALTLGTIIKYTGKARRLSPDFEQDEHTGAIIKQ
                     DLPQIPTIIDLYGTYEYNRNLTLKLSVQNLMNRDYSEALNKLNMMPGLGDESHPANSA
                     RGRTWIFGGDIRF"
     gene            4544..5719
                     /gene="senB"
                     /locus_tag="OQQ19_003247"
     CDS             4544..5719
                     /gene="senB"
                     /locus_tag="OQQ19_003247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001020413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterotoxin production-related protein TieB"
                     /protein_id="HCS1804766.1"
                     /translation="MNIFTLSKAPLYLLISLFLPTMAMAIDPPERELSRFALKTNYLQ
                     SPDEGVYELAFDNASKKVFAAVTDRVNREANKGYLYSFNSDSLKVENKYTMPYRAFSL
                     AINQDKHQLYIGHTQSASLRISMFDTPTGKLVRTSDRLSFKAANAADSRFEHLRHMVY
                     SQDSDTLFVSYSNMLKTAEGMKPLHKLLMLDGTTLALKGEVKDAYKGTAYGLTMDEKT
                     QKIYVGGRDYINEIDAKNQTLLRTIPLKDPRPQITSVQNLAVDSASDRAFVVVFDHDD
                     RSGTKDGLYIFDLRDGKQLGYVHTGAGANAVKYNPKYNELYVTNFTSGTISVVDATKY
                     SITREFNMPVYPNQMVLSDDMDTLYIGIKEGFNRDWDPDVFVEGAKERILSIDLKKS"
     gene            6178..6528
                     /locus_tag="OQQ19_003248"
     CDS             6178..6528
                     /locus_tag="OQQ19_003248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001480002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HCS1804767.1"
                     /translation="MPSGRHTARIRTGHDSGTVSPFVHSTLSPLVPVYPVFITVIADH
                     DKPQPSGCLLESQGSLCPICRQRITHETGWNVHHKVKKVMGGGEELSNLVLLHPNCHR
                     QLHSCEAGSLKKGL"
     gene            6671..6892
                     /locus_tag="OQQ19_003249"
                     /pseudo
     CDS             6671..6892
                     /locus_tag="OQQ19_003249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            complement(6913..6975)
                     /locus_tag="OQQ19_003250"
                     /pseudo
     CDS             complement(6913..6975)
                     /locus_tag="OQQ19_003250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001743492.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
     gene            7426..8838
                     /gene="ospC1"
                     /locus_tag="OQQ19_003251"
     CDS             7426..8838
                     /gene="ospC1"
                     /locus_tag="OQQ19_003251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC1"
                     /protein_id="HCS1804768.1"
                     /translation="MNISETLNSANTQCNIDSMDNRLHTLFPKVTSVRNAAQQTMPDE
                     KNLKDSANIIKDFFRKTIAAQSYSRMFSQGSNFKSLNIAIDAPSDAKASFKAIEHLDR
                     LSKHYISEIREKLHPLSAEELNLLSLIINSDLIFRHQSNSDLSDKILNIKSFNKIQSE
                     GICTKRNTYADDIKKIANHDFVFFGVEISSHQKKHPLNTKHHTVDFGANAYIIDHDSP
                     YGYMTLTDHFDNAIPPVFYHEHQSFLDKFSEVNKEVSRYVHGSKGIIDVPIFNTKDMK
                     LGLGLYLIDFIRKSEDQSFKEFCYGKNLAPVDLDRIINFVFQPEYHIPRMVSTENFKK
                     VKIREISLEEAVTASNYEEINKQVTNKKIALQTLFLSITNQKEDVALYILSNFEITRQ
                     DVISIKHELYDIEYLLSAHNSSCKVLEYFINKGLVDVNTKFKKTNSGDCMLDNAIKYE
                     NAEMIKLLLKYGATSDNKYI"
     gene            complement(8942..9090)
                     /locus_tag="OQQ19_003252"
                     /pseudo
     CDS             complement(8942..9090)
                     /locus_tag="OQQ19_003252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611146.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            9166..10863
                     /gene="ospD3"
                     /locus_tag="OQQ19_003253"
     CDS             9166..10863
                     /gene="ospD3"
                     /locus_tag="OQQ19_003253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector OspD3"
                     /protein_id="HCS1804769.1"
                     /translation="MPSVNLIPSRKICLQNMINKDNVSVETIQSLLHSKQLPYFSDKR
                     SFLLNLNCQVTDHSGKLIVCRHLASYWIAQFNKSSGHVDYHHFAFPDEIKNYVSVSEE
                     EKAINVPAIIYFVENGSWGDIIFYIFNEMIFHSEKSRALEISTSNHNMALGLKIKETK
                     NGGDFVIQLYDPNHTATHLRAEFNKFNLAKIKKLTVDNFLDEKHQKCYGLISDGMSIF
                     VDRHTPTSMSSIIRWPNNLLHPKVIYHAMRMGLTELIQKVTRVVQLSDLSDNTLELLL
                     AAKNDDGLSGLLLALQNGHSDTILAYGELLETSGLNLDKTVELLTAEGMGGRISGLSQ
                     ALQNGHAETIKTYGRLLKKRAINIEYNKLKNLLTAYYYDEVHRQIPGLMFALQNGHAD
                     AIRAYGELILSPPLLNSEDIVNLLASRRYDNVPGLLLALNNGQADAILAYGDILNEAK
                     LNLDKKAELLEAKDSNGLSGLFVALHNGCVETIIAYGKILHTADLTPHQASKLLAAEG
                     PNGVSGLIIAFQNRNFEAIKTYMGIIKNENITPEEIAEHLDKKNGSDFLEIMKNIKS"
BASE COUNT         3405 a         2332 c         2330 g         2933 t
ORIGIN      
        1 ctccgttgta atgtgccagc cgggaggccg ctatcggcgg cttcttcaga taacgaccca
       61 ggtagcgcgc cgtattcctc ccgccggcca ttttcttcga catgtacatc aggcgcggaa
      121 ctcatcgggg cgcgggaatg aaatcccatt cagactccgg atagattcaa gcaagcccac
      181 ttatcgtcaa aatcggtgtt gcaaaaacgg gagtgaccat agatccgttt tccaagcgga
      241 ccccataata tcggctggta aacatcactc gctagtgcat tctttttgtt ggtaatgata
      301 attatttaca tttattcttt gatgttttat cataattaat gttttatcaa taaatatatg
      361 gaaatatatt gtttcagatg ggaatatgag aaagttcatc cttatttcta tgataacgtt
      421 agctagtgtt agtctgggag cctgcagaca gaatgccacc ataaagcagg atgcgccagg
      481 gcagaaagct ttcctgattg acgggcagat ttacgatttg cacagtggca aaattatttc
      541 tagcagcgag cttttggcgg atcttgctac cgctcgacat cttattattg gtgaaaaaca
      601 cgataatgcc gagcatcatc agattgagct ttggcttatt caaaatctgc tcatccagcg
      661 accacagggg agtgtgttgc ttgagatgtt gacgtcagac caacagcccc gagttaacca
      721 agttaaatgt tggctgaaag ataatcctgt ggttcgagat agccgtgttc aggaactact
      781 taactggcaa aaagggtggt cctgggagat gtatggcgac atcgtcatgc agctattacg
      841 tgggccttac ccgctgctca atgccaacat tggccgggag cagatgttgg cactgtacaa
      901 aaaaaacgaa tttcctaaag gaaaaaaatc cactgcacct gtggtacaag aagctctgcg
      961 tgaaaccatc atagctatgc atgaaggcaa ccttgaaagc cagcaactga cgtcaatgct
     1021 ctctgttcag cagcagcggg atcgctacat ggcccgccag cttctgagtg ccccggtacc
     1081 gtcgttgttg attgcaggtg gttatcacgc gtcaaaaaac atgggcgtac cgttacacat
     1141 ggaagatctt gccaccggca cccatccagt ggtgttgatg cttgcagaaa aaggaatgaa
     1201 catcacagta gatcatgctg actacgtgtg gtttgtagcg ccagatacaa caaaaaggta
     1261 aaccatggat gatgaatatt ctccacttcc cacagtcggt aaaatggagc agctggttta
     1321 tctgttctct actgcttcat ggactgattt tccttacgtt tatctggcgt ttttccgaag
     1381 ttcagcccgc tatgtctcct gcaccggcga tcatgctgca atgggcagaa attatagagg
     1441 ctccttcttc tccactttcg cttccggtgg gaatcgctca acaggagtcc gcagtgacag
     1501 aagaaaagca acaaactgag gacagacaac aacgtcctgt cactgaagac agtgatgcaa
     1561 ccattgaaat aactaggaag aaaaagtcat ccgatggaga aaagaaaaag acacgtccac
     1621 ctcgtaagat aaaggctcaa accagcgaca gcaaccccac agccgtttcc agtaatgctg
     1681 cacctcaggc tctggtcgaa tcgtcccgta ttgctgcgcc ttttaacagt gactcaacaa
     1741 agcgagataa ttctgaggca tcttgggaaa gcagagtaaa aggccacctt aaccgttata
     1801 aacgttaccc tggcgatgcc agaaaacgtg cacgaaccgg cacagccgtt gtgactttta
     1861 ccgtaaacac ggaaggcact attgtcagta gtttcttgga aatctcgtca ggaacccttt
     1921 ctcttgaccg cgaagctatt gctgttttag aacgcgctca accacttccc aaaccaccgc
     1981 ctgaaatatt ggagggagga ttatttaaag taaaaatgcc gattaccttt aagttgaagg
     2041 agtaaaggga taattggccg ttcaagttca tttaactgaa atttaatttt catttttatg
     2101 ctgaacattt tatcaaactt ttccactgtc gaaaaaatca aaaagacagt agatcataat
     2161 taataaacaa atagttatac ttatctttat taatattata tccaaggaaa tttatgaacg
     2221 ttataaaact ggctatcggc tcaggcatat tattgctcag ctgcggtgct tactcacaat
     2281 ccatcagtga aaaaactaat tccgacaaaa aaggagcggc agaattcagt ccgctcagcg
     2341 tttctgtcgg gaagacgacc agtgagcagg aagctctcga gaaaacaggc gcgaccagtt
     2401 cccggacaac ggacaaaaac ctgcaatcac ttgacgcaac agtgcgtagt atgcctggta
     2461 cttatactca aatagatcct ggtcagggag caatcagtgt gaatattcga ggcatgagcg
     2521 gatttggtcg tgtaaacact atggtcgatg gtattaccca gagtttttac ggaacctcta
     2581 cctccggaac aacggcgcat ggttcaacta acaatatggc tggcgtactt atagatccta
     2641 acttactggt agcagttgat gttacacgcg gtgacagcag tggctctgaa gggatcaacg
     2701 cccttgccgg tagtgcaaat atgcgtacta ttggcgttga cgatgtaata tttaacggta
     2761 atacatatgg ccttcgttca cgtttctctg tcggtagtaa tgggctggga cgcagcggaa
     2821 tgatcgccct tggtggaaaa agcgacgctt ttacggatac gggaagcatt ggcgttatgg
     2881 ctgctgtgag tggcagttct gtgtactcta atttctcaaa tggttctgga attaacagca
     2941 aagagtttgg ttatgataaa tatatgaagc agaaccccaa atcccaactg tataaaatgg
     3001 atatcagacc agacgaattt aacagcttcg aactttccgc tcgaacctat gaaaataaat
     3061 ttacacgtcg tgatataacc agtgacgact attacattaa atatcattac accccttttt
     3121 ctgaattaat tgactttaac gtaacggcca gtaccagtcg cggtaatcaa aagtatcgtg
     3181 atggctcgct gtatactttc tacaaaacct cagcgcaaaa tcgttctgac gcgctggata
     3241 tcaacaatac cagccggttc actgtcgcgg acaatgaact ggagtttatg ctgggcagca
     3301 aactgatgcg tacccgctat gaccggacca ttcactcagc ggcgggcgac ccgaaagcga
     3361 atcaggaatc gatcgagaac aatccgttcg caccctccgg ccagcaggat atttcagcgc
     3421 tgtataccgg gctgaaggtt acgcgcggca tctgggaggc agatttcaat ctcaactaca
     3481 cacgtaacag gatcacaggg tacaagcccg cctgcgattc acgcgttatc tgcgtgccac
     3541 agggtagcta cgatattgac gataaagagg gtggcttcaa cccttcagtt cagctttctg
     3601 ctcaggtaac accatggctt cagccgttca ttggctacag caaatccatg cgcgccccga
     3661 acatccagga gatgttcttc tctaattcag gaggcgcatc catgaaccca ttcctgaagc
     3721 ctgaacgtgc agaaacctgg caggcgggtt ttaacattga taccagagat ttactggtcg
     3781 aacaggatgc cctgcgcttt aaggctctgg cgtaccgcag caggatccag aactacatct
     3841 acagcgagtc ttatctggtt tgttctggag gtcgtaaatg cagtatggct gaggtgattg
     3901 gcaatgactg ggagggcatt agcgatgaat acagcgacaa tatgtacatc tacgttaact
     3961 cggcaagcga cgttattgca aagggcttcg aactggagat ggattatgat gcaggttttg
     4021 cttttggccg actctctttc agccagcagc aaacagacca gccaacctcc atcgccagca
     4081 cctactttgg cgcaggggat atgaccgaac tgcccagaaa atacatgacg ctggatactg
     4141 gtgttcgctt cttcgataac gcgttgaccc tgggcactat cataaaatac acaggcaagg
     4201 ctcgtcgcct gtcgcctgat tttgagcagg acgaacatac cggcgcaata atcaaacagg
     4261 atttgccgca gatcccaacg attatcgatc tctatggtac ttacgagtac aaccgcaacc
     4321 tgacactgaa actttcggta caaaacctga tgaacagaga ttattcggag gcgctgaata
     4381 agctcaacat gatgccaggt cttggtgacg agagccaccc agccaattcc gcgcgtggca
     4441 gaacatggat atttggcggg gacattcgtt tctgatgaca atttccgcca ggttcagaca
     4501 atacgttttc tctcttatgt caattttatt gcaggaacga aaaatgaata tttttacttt
     4561 atccaaagca ccgctatact tgttaatttc actattttta cccacgatgg ccatggctat
     4621 cgatccacct gaacgcgaac tttcgcgatt tgccctgaaa acgaattacc ttcagtcccc
     4681 tgatgaaggc gtctatgaac tggcgtttga taatgccagt aaaaaggtgt ttgcagcagt
     4741 caccgatcgt gtaaatcgtg aagccaataa aggctatctg tattcgttta attcagattc
     4801 gctgaaagtc gaaaataaat acacgatgcc ataccgggca ttttcgctgg cgataaatca
     4861 ggataaacat cagctctata tcggacacac ccagtcagcg tccctgcgta tcagtatgtt
     4921 tgacacccca accggtaaac tggtaagaac cagcgacagg ttaagtttta aagcggcaaa
     4981 cgctgcagat tcgcgttttg agcatttgcg ccatatggtt tacagccagg attccgatac
     5041 cctgtttgtg agttatagca atatgctgaa aacggccgag ggcatgaagc ctctgcataa
     5101 gctgttaatg ctcgacggga cgacgcttgc cttaaaaggc gaggttaagg atgcttacaa
     5161 aggtacagcg tatggtctga cgatggatga aaaaacacag aaaatctacg ttggcggaag
     5221 agattacatc aacgaaattg atgcgaaaaa tcagacgctg ctgcgtacca tcccgttgaa
     5281 agatccgaga ccacaaatca caagtgtgca gaatctggcg gtggactccg cttctgaccg
     5341 tgcctttgtg gtggtattcg accatgacga tcgttccggt acaaaagatg gcctctatat
     5401 ttttgactta cgcgacggta aacagcttgg ctatgtgcac acaggagccg gagctaacgc
     5461 ggtgaaatac aatccgaaat ataacgaact gtatgtcacc aacttcacta gcggcaccat
     5521 cagcgtagtg gatgccacca aatacagcat cacccgtgaa tttaacatgc cggtctaccc
     5581 aaaccagatg gtgttgtcgg acgatatgga taccctttac attggcatca aagaaggctt
     5641 taaccgcgat tgggatcctg atgtgtttgt ggaaggagct aaagaacgta ttctgagcat
     5701 tgatttgaaa aagtcgtgat cgggggaaaa aacatgggat aaaaactccg ttattccact
     5761 aaactggccg gactaggaaa agcaaacatc tctgtcctgc cggtacgcct gttacgccgc
     5821 tccatgaggc tgaggaatct ccagaaaacg agacaggcac agcattgtac gatcaactga
     5881 tttgtgccaa taattcaatg aaatcacagc tatgcctgtt cacgtatagg aaattgaaaa
     5941 actaagcgat accactgtcc gcgtcttatg cctcgtgcgg taagctgttt ttcacatcac
     6001 gccggtgttt ttttctttct gtggacggtt ttaatactgt aatcggccgt tttttatact
     6061 taccccgatt cccgggcgca cttatcctgc atcaccccgg gatatacctc agcagactga
     6121 tatcccgcgc gtttttcttc agcccctcca cattcagtcc cgcgatgacc cggcggtata
     6181 ccatccggcc gccacacagc acgcattcga acgggtcacg actcaggaac tgtttcacca
     6241 tttgtgcata gcacactttc gccactggtt ccggtttatc ctgtttttat aacggtaatt
     6301 gcagaccatg acaaaccgca gccgtcaggc tgcctactcg agtcacaagg ctctctgtgt
     6361 ccgatatgcc ggcagcgcat tacccatgaa actggctgga acgtacacca taaggtgaag
     6421 aaagttatgg ggggcggtga agaattatct aaccttgtct tgttacatcc aaattgccat
     6481 cgacagttac acagttgtga agccggctct ctcaaaaagg gcttataaag gcttgagcgg
     6541 tgtaccggga aaccggtatg caccgttctt aggggagggc agtccagcaa tgaactgtcc
     6601 ttacccgaca aacatccaaa acgaacggaa cgtgctggaa tccgcatata acccgttgta
     6661 aagtgaggaa atggacacct cacttgctca tgagaacgcc cgcctgcggg cactgttgca
     6721 gacgcaacag gacactatcc accagatggc tgaatacaac cgcctgctct cacagcggat
     6781 ggcggcttat gcttccgaaa tcaaccgact gaaggcgctg gttgcgaaac tgcagcgtat
     6841 gcagttcggt aaaagcccag aaaaacttcg cgcaaaaacc gaacggcaga ttccattttc
     6901 acgggcgatc tacgccacac aggctctggg ttgcagtgac tgctccatta aggcgatttt
     6961 gaactcataa gggaagtaac aaaaaaactg caaaagtaca ataattatat atggccaaac
     7021 taacctctat taaaaaaaca tcagtttttc acacttagtt gagcttcatg aaaaaatcat
     7081 cgaggatttc attgcagaat acacattcca ctaactggaa gcactccata agaggaatca
     7141 gagaaagtat cgttttttta tagtaaaatt cattgctgtt caataaaatt gatataatta
     7201 ttaaattatg gaaataattt cacaaaaaag attaacttga gttcttaagc atcggatttt
     7261 agatattttg aaatatctgg catcacataa catcaaaagt atataatacc cttatctaat
     7321 tacatgcagt atattgtata tatactcaaa aattgtaatt cataccctac tatatcttgt
     7381 ggggaaagat attaattaaa actgttttca tataaggttc attttatgaa tatatcagaa
     7441 acactgaact cagcaaatac ccaatgcaat atagattcta tggataacag attacataca
     7501 ttgtttccaa aagtgacatc agtgcgaaac gctgcacaac aaactatgcc agatgaaaaa
     7561 aatttaaaag atagtgcaaa tattattaaa gatttcttta ggaaaactat agcagcacaa
     7621 agttatagta gaatgttctc tcaaggctct aactttaaat ctttaaatat agcaattgat
     7681 gcaccatcag acgctaaagc ctcatttaag gctattgagc accttgacag attatcgaag
     7741 cattatatat ctgaaataag ggaaaaactt catcctcttt ctgcagagga actcaatttg
     7801 ctttcgctaa ttattaattc tgatttaatc ttcagacatc aaagtaattc tgatttgtct
     7861 gataaaattt taaacattaa gtcattcaat aaaattcagt ctgaaggaat atgcacaaaa
     7921 cgaaacacat acgctgatga tataaaaaaa atagctaatc atgactttgt gttttttggc
     7981 gttgaaatct ctagccatca gaaaaaacac cccctgaata caaaacatca cactgttgat
     8041 tttggtgcaa atgcgtatat cattgatcat gactctccat atggatatat gacattaacc
     8101 gatcactttg ataatgctat tccacctgtt ttttaccatg agcaccaatc atttttagat
     8161 aaattttcag aggttaataa agaagttagt cgatacgtac atggaagtaa aggaattata
     8221 gatgtaccaa tattcaatac taaagatatg aagttagggc tcggattata cctgattgac
     8281 tttattagaa aaagtgaaga ccaaagcttc aaggagtttt gctatggaaa aaatcttgcc
     8341 cctgtggatc tggatagaat cataaacttt gtttttcagc cagagtacca tatacctagg
     8401 atggtaagta cagaaaactt caaaaaagtt aagattagag aaatatcctt agaggaggct
     8461 gttacagcat ctaattacga agaaattaac aagcaggtca ctaacaaaaa aattgctctc
     8521 cagactcttt ttctttcgat tactaatcaa aaagaggatg tcgccttata tatattatct
     8581 aattttgaga taactagaca agatgttatt tccataaagc atgagttgta tgatattgag
     8641 tatctactta gcgctcataa ttcaagctgt aaagtacttg agtattttat caataaggga
     8701 ttggttgatg taaacacaaa gttcaaaaaa actaatagtg gggattgtat gttggataac
     8761 gcaataaaat atgagaatgc agaaatgata aaactattat tgaaatatgg tgcaacatct
     8821 gacaataaat atatttaatc aaaattgaat atcgtttagc aaaaggcagt atttgcacaa
     8881 aatatcgata tattgtttat tgtcagtatg gctcaatgtg ataatagttg gaaagtttga
     8941 tgggtttcgc cccgttgtag cggtagtcga gctggaaggt cttcaggcac tgcttacagc
     9001 gatagagcag cccccctgaa ctggaatggc cgttccggat accccctgag tttcagagta
     9061 acggggacaa accacatcaa tctttgccat caatcatcca aagggcaaag agtacaacaa
     9121 cactaagtct gcgtcacaac ccatcaatga aaggaatata tacatatgcc atcagtaaat
     9181 ttaatcccat caaggaaaat atgtttgcaa aatatgataa ataaagacaa cgtctctgtt
     9241 gagacaatcc agtctctatt gcactcaaaa caattgccat atttttctga caagaggagt
     9301 tttttattaa atctaaattg ccaagttacc gatcactctg gaaaacttat tgtctgtcga
     9361 cacttagctt cctactggat agcacagttt aacaaaagta gtggtcacgt ggattatcat
     9421 cactttgctt ttccggatga aattaaaaat tatgtttcag tgagtgaaga agaaaaggct
     9481 attaatgtgc ctgctattat ttattttgtt gaaaacggtt catggggaga tattattttt
     9541 tatattttca atgaaatgat ttttcattcc gaaaaaagca gagcactaga aataagtaca
     9601 tcaaatcaca atatggcatt aggcttgaag attaaagaaa ctaaaaatgg gggggatttt
     9661 gtcattcagc tttatgatcc caaccataca gcaactcatt tacgagcaga gtttaacaaa
     9721 tttaacttag ctaaaataaa aaaactgact gtagataatt ttcttgatga aaaacatcag
     9781 aaatgttatg gtcttatatc cgacggtatg tctatatttg tggacagaca tactccaaca
     9841 agcatgtcct ccataatcag atggcctaat aatttacttc accccaaagt tatttatcac
     9901 gcgatgcgta tgggattgac tgagctaatc caaaaagtaa caagagtcgt acaactatct
     9961 gacctttcag acaatacgtt agaattactt ttggcagcca aaaatgacga tggtttgtca
    10021 ggattgcttt tagctttaca aaatgggcat tcagatacaa tcttagcata cggagaactc
    10081 ctggaaactt ctggacttaa ccttgataaa acggtagaac tactaactgc ggaaggaatg
    10141 ggaggacgaa tatcgggttt atcccaagca cttcaaaatg ggcatgcaga aactatcaaa
    10201 acatacggaa ggcttctcaa gaagagagca ataaatatcg aatacaataa gctgaaaaat
    10261 ttgctgaccg cttattatta tgatgaagta cacagacaga tacccggact aatgtttgct
    10321 cttcaaaatg gacatgcaga tgctatacgc gcatacggtg agctcattct tagcccccct
    10381 ctcctcaact cagaggatat tgtaaatttg ctggcctcaa ggagatatga caatgttccc
    10441 ggacttctgt tagcattgaa taatggacag gctgatgcaa tcttagctta tggtgatatc
    10501 ttgaatgagg caaaacttaa cttggataaa aaagcagagc tgttagaagc gaaagattct
    10561 aatggtttat ctggattgtt tgtagccttg cataatggat gtgtagaaac aattattgct
    10621 tatgggaaaa tacttcacac tgcagacctt actccacatc aggcatcaaa attactggcg
    10681 gcagaaggcc caaatggggt atctggatta attatagctt ttcaaaatag gaattttgag
    10741 gcaataaaaa cttatatggg aataataaaa aatgaaaata ttacacctga agaaatagca
    10801 gaacacttgg acaaaaaaaa tggaagtgat tttctagaaa ttatgaagaa tataaaaagc
    10861 tgaatattat ctcgtggtga tacactgaat ttgaggtaac cggctcattt aaaccgtctg
    10921 gtctgttacc tccggttcca caaaaataat gtccatcatt ttgaagtgga cactatcgta
    10981 tggaataccg gacctggatc
//
LOCUS       DAJVSY010000139        10928 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.140, whole genome shotgun sequence.
ACCESSION   DAJVSY010000139 DAJVSY010000000
VERSION     DAJVSY010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10928
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.140"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            119..748
                     /locus_tag="OQQ19_003254"
                     /pseudo
     CDS             119..748
                     /locus_tag="OQQ19_003254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004129194.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RNA ligase RtcB family protein"
     gene            745..1359
                     /locus_tag="OQQ19_003255"
     CDS             745..1359
                     /locus_tag="OQQ19_003255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000602105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor H"
                     /protein_id="HCS1804770.1"
                     /translation="MILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETET
                     GRYSDTLRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRFTADE
                     QEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLL
                     IAWKLEQQQQENSAVLKSQRRMFHHQIERGNPRRTFTGMAFIEG"
     gene            complement(1416..2873)
                     /gene="pepD"
                     /locus_tag="OQQ19_003256"
     CDS             complement(1416..2873)
                     /gene="pepD"
                     /locus_tag="OQQ19_003256"
                     /EC_number="3.4.13.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosol nonspecific dipeptidase"
                     /protein_id="HCS1804771.1"
                     /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKG
                     FHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDG
                     EWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWL
                     QADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGG
                     EIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDAL
                     KSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRN
                     SDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA
                     KGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIG
                     PTITGPHSPDEQVHIESVGHYWTLLTELLKEIPAK"
     gene            3134..3592
                     /gene="gpt"
                     /locus_tag="OQQ19_003257"
     CDS             3134..3592
                     /gene="gpt"
                     /locus_tag="OQQ19_003257"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HCS1804772.1"
                     /translation="MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA
                     LLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIRE
                     MYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR"
     gene            3684..4928
                     /gene="frsA"
                     /locus_tag="OQQ19_003258"
     CDS             3684..4928
                     /gene="frsA"
                     /locus_tag="OQQ19_003258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase FrsA"
                     /protein_id="HCS1804773.1"
                     /translation="MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTI
                     PHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA
                     TQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEA
                     AQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYF
                     APRGIVMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGA
                     NVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEA
                     LRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFN
                     PVYRNFDKGLQEITGWIEKRLC"
     gene            4986..5387
                     /gene="crl"
                     /locus_tag="OQQ19_003259"
     CDS             4986..5387
                     /gene="crl"
                     /locus_tag="OQQ19_003259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-binding protein Crl"
                     /protein_id="HCS1804774.1"
                     /translation="MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNV
                     KPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLRE
                     FHEKLRELLTTLNLKLEPADDFRDEPVKLTA"
     gene            complement(5426..6481)
                     /gene="phoE"
                     /locus_tag="OQQ19_003260"
     CDS             complement(5426..6481)
                     /gene="phoE"
                     /locus_tag="OQQ19_003260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoporin PhoE"
                     /protein_id="HCS1804775.1"
                     /translation="MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYM
                     SDNDSKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGL
                     KYKDLGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFF
                     GVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQN
                     LQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQF
                     DFGLRPSLGYVLSKGKDIEGIGGEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNK
                     LNINNDDIVAIGMTYQF"
     gene            6769..7872
                     /gene="proB"
                     /locus_tag="OQQ19_003261"
     CDS             6769..7872
                     /gene="proB"
                     /locus_tag="OQQ19_003261"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HCS1804776.1"
                     /translation="MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHR
                     IVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQML
                     LTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILA
                     GADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKL
                     QAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAG
                     EITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDA
                     LRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR"
     gene            7884..9137
                     /gene="proA"
                     /locus_tag="OQQ19_003262"
     CDS             7884..9137
                     /gene="proA"
                     /locus_tag="OQQ19_003262"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HCS1804777.1"
                     /translation="MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILN
                     ANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSG
                     LRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQ
                     DALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVI
                     TGGIGVCHIYVDESVEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQ
                     MAESGVTLHADAAALAQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIR
                     EHGTQHSDAILTCDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLH
                     ARGPMGLEALTTYKWIGIGDYTIRA"
     gene            9252..9327
                     /locus_tag="OQQ19_003263"
     tRNA            9252..9327
                     /locus_tag="OQQ19_003263"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9285..9287,aa:Thr,seq:cgt)
     gene            complement(10382..10816)
                     /locus_tag="OQQ19_003264"
     CDS             complement(10382..10816)
                     /locus_tag="OQQ19_003264"
                     /inference="COORDINATES: protein motif:HMM:NF024139.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1804778.1"
                     /translation="MGYDSRLDRLATTSWHSFFNNITARGEIMEPYSLTLDEACHFLK
                     ISRPTAINWIRTGRLQATRKDPTKNKSPYLTTRQACIAALQSPLHTVQVSAGDGITEE
                     RKCHSSAEVKYGTPVSHCRTVKDLNSLLEQRTKGRRQNSMTS"
     gene            complement(10732..>10928)
                     /locus_tag="OQQ19_003265"
     CDS             complement(10732..>10928)
                     /locus_tag="OQQ19_003265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000206055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804779.1"
                     /translation="LEVEPDERESYELFMEKHFGGLVDSRRAKNGDNEYMAWDMTLGW
                     IVWQQRAGIHFSTISQQEVK"
BASE COUNT         2599 a         2699 c         2824 g         2806 t
ORIGIN      
        1 ctattagcgg ttaccagcgc cccaccagac ccggtgacat caccccccgg atcatggacg
       61 actgggggca gtaatcatgc cgggtctggc tggctaacac cccattataa ggggtacgaa
      121 taaagtaacg gggcagtcta ttttacagcg gcatattgcc tcgttctcgc atcatggttt
      181 gcctcaaggc agtgacgacg cgctacggta tattgcggaa catgacgatg cgctggcgtt
      241 tgcgtgtatt aatcgccaga tgatcgcttt gcgcataatg caacaagtta aggccacggg
      301 aagtccggtt ctggatgtgg cgcataactt tgttagcgcg tgtcaaatcg gcgatcaaca
      361 gggctggttg catcgtaaag gtgccacgcc ggatgacaac ggtctggtga ttattcccgg
      421 ttcacgtggt gattactcct ggattgtaca gcctgttgcg aacgaaaaaa cgctccactc
      481 gctggcgcat ggggcagggc gtaaatgggg gcgcaccgag tgtaaatggc gtctggcagc
      541 gaaatacacg gtgacgcaac tctcgcggac tgaacttggc agtcggataa tttgtcgcga
      601 taaacaactc atctttgaag aagcgccaca agcctataaa tcggctgaaa gcgtggtgca
      661 atgtctggtg caggccggtt taattattcc tgtcgcgcgg ctgcgtccgg tgctaacgct
      721 caaaaacagt ggagggaaaa aaggatgatc ttgctacaac tctcctcagc gcaggggccg
      781 gaagaatgtt gtctcgcagt gaaaaaggcg ctggacaggc taattaaaga agctgcccga
      841 caagacgtcg cggtaacggt gttggaaaca gaaacgggcc gctactctga cacgctgcgt
      901 tcagctctgg tttctctgga tggcgataac gcatgggcat taagcgaaag ctggtgtggc
      961 actattcagt ggatttgtcc gagtccgtat cggcctcatc atgggcgcaa aaactggttt
     1021 ctgggcattg ggcgttttac cgctgatgag caggagcaat ccgatgcgat ccggtatgag
     1081 acgctgcgtt cgtcggggcc gggcggtcaa catgtcaata aaaccgactc ggcggtacgc
     1141 gccacgcatt tggcatccgg tattagcgtg aaggttcagt cagagcgtag tcagcatgct
     1201 aacaagcggc tggcacgatt gctgattgcc tggaagctgg agcagcagca acaggaaaat
     1261 agcgcggtgc tgaaatcgca gcggcgaatg ttccatcacc agattgaacg tggcaacccg
     1321 agacggacat ttacagggat ggcttttatc gaaggataat gaaggatgaa actgccggaa
     1381 ggcgattaaa cgccatccgg cagcaaatca aataattact tcgccggaat ttctttcagc
     1441 agttcagtca gcagtgtcca gtaatgacct acgctttcga tgtgaacttg ctcatccgga
     1501 gagtgtggac cggtgatagt tggcccgata gaaaccatgt ccatttccgg atacggtttt
     1561 ttgaacagac cacattccag gcccgcgtgg ataatctgga tgttcggcgt cttgttgaac
     1621 aggcgctgat aggtttcacg taccagatgc atcaccggag aattagcgtc cggctgccag
     1681 ccaggatatg cgcctttcgc ttcggttttc gcgccagcca gtttacccag cgaatccagc
     1741 atgctcacca cgtagtcttt accgctgtcg atcagtgaac ggatcaggca gtgaatttct
     1801 acgttattgt cagtcatggt caccacaccg acgttcaggg aggtttcaac cacacctttg
     1861 gctacatcgg agttgcggat cacaccgttc ggggtggcgt tcagcagacg aataaaggta
     1921 tcgcgagatt tcgcaatcag ggcagcttta tcgttcgcta cagagtccag caacaaggcc
     1981 agatttttct ctttctctgc cagctcgttt ttcaggatct cctgataggt attcaccaga
     2041 gatttcagtg cgtcgacttt atcagctgcg acagcaatgg tcgcaaaggc ttcacgcggg
     2101 atggcgttac gcagtgtgcc gccgttgaaa tcgataaggc gcaggtccag ttcttctgca
     2161 tgacccgcca ggaagcgcac cagcagtttg ttggcattac ccaggccaac gtggatttca
     2221 ccgccggagt gaccgccttt cagacctttt aaggttaact tgaaggtttc aaaaccagct
     2281 ggaaccgctt cacgatctaa atgcaggttg gaggtgaagt cgataccccc cgcacaaccc
     2341 atgtagattt caccttcttc ttcggagtcg gtgttaatca gaatatcagc ctgcaaccag
     2401 ttgctctgta agccaaaagc accgtccata ccggcttctt cggtcatggt cagcagcact
     2461 tccagcggac cgtgaaccac gttttcgtca gccagaaccg ccagtgcaga ggccatacca
     2521 atgccgttat ccgcacccag cgtggtgccg cgcgctttaa cccattcgcc atcaatataa
     2581 ggctggatag gatctttcgt gaagtcatgc acggtgtcgt tatttttctg cggcaccata
     2641 tcgaggtggg cctgtaagac gaccggttta cgattttcca tacctgcggt agcaggttta
     2701 cgaatcagga tattacctac ctgatcgcgt tcgacatgga aacctttctc ttttgcccaa
     2761 ccaacaatgt attcagcgag ttgctcttca tgataggacg ggtgcggaat agaacagatt
     2821 ttggcaaaaa tatcccacag cggctgtgga gataattgag acagttcaga cacgttaagt
     2881 ctccttgtcg atcacccgca aaacagtatt gcaggtcaca gggttagcag aaaatgttgt
     2941 caacacaaga caggcttgcg agatatgttt gagaatacca ctttatcccg cgtcagggag
     3001 aggcagtgcg taaaaagacg cggactcatg tgaaatactg gtttttagtg cgccagatct
     3061 ctataatctc gcgcaaccta ttttcccctc gaacactttt taagccgtag ataaacaggc
     3121 tgggacactt cacatgagcg aaaaatacat cgtcacctgg gacatgttgc agatccatgc
     3181 acgtaaactc gcaagccgac tgatgccttc tgaacaatgg aaaggcatta ttgccgtaag
     3241 ccgtggcggt ctggtaccgg gtgcgttact ggcgcgtgaa ctgggtattc gtcatgtcga
     3301 taccgtttgt atttccagct acgatcacga caaccagcga gagcttaaag tgctgaaacg
     3361 cgcagaaggc gatggcgaag gcttcatagt tattgatgac ctggtggata ccggtggtac
     3421 tgctgttgcg attcgtgaaa tgtatccaaa agcgcacttt gtcaccatct tcgcaaaacc
     3481 ggctggtcgt ccgctggttg atgactatgt tgttgatatt ccgcaagata cctggatcga
     3541 acagccgtgg gatatgggcg tcgtattcgt cccgccaatc tccggtcgct aatcttttca
     3601 acgcctggca ctgccgggcg ttgttctttt taacttcagg caggttacaa tagtttccag
     3661 taagtattct ggaggctgca tccatgacac aggcaaacct gagcgaaacc ctgttcaaac
     3721 cccgctttaa acatcctgaa acctcgacgc tagtccgccg ctttaatcac ggcgcacaac
     3781 cgcctgtgca gtcggctctt gatggtaaaa ccatccctca ctggtatcgc atgattaacc
     3841 gtctgatgtg gatctggcgc ggtattgacc cacgtgaaat cctcgacgtc caggcacgta
     3901 ttgtgatgag cgatgctgaa cgtaccgacg atgatttata cgatactgtg attggctacc
     3961 gtggtggcaa ctggatttat gagtgggcca cccaggcgat ggtgtggcaa caaaaagcct
     4021 gtgcggaaga agatccgcaa ctcagtggtc gacactggct gcatgcggct acgttgtaca
     4081 acattgccgc ctatcctcat ctgaaaggag atgacctggc cgagcaagcg caggctttat
     4141 caaaccgcgc ctatgaagag gccgcccagc gtctgccggg cacgatgcgg cagatggagt
     4201 ttaccgtacc cggcggtgcg cccatcaccg gctttttgca tatgccgaaa ggcgatggcc
     4261 cgttcccgac agtattaatg tgtggtggtc tggatgcgat gcagacggac tattacagcc
     4321 tgtatgaacg ttattttgcg ccgcgcggca ttgtgatgct gactattgat atgccgtcgg
     4381 tgggcttttc ttcaaaatgg aagctcaccc aggactccag cctgttgcat cagcacgtct
     4441 taaaggcgct gcctaacgta ccgtgggtgg atcacactcg cgtcgcggcc tttggtttcc
     4501 gtttcggcgc taacgttgcc gtgcgtctgg catatcttga atcgccgcgt ctgaaagcgg
     4561 ttgcctgtct tggtccggta gttcataccc tgttgagtga ttttaagtgc cagcaacagg
     4621 tgccggaaat gtatcttgac gttctggcga gtcgtttggg gatgcatgat gcttccgacg
     4681 aagcgttacg cgtggagctg aatcgctatt cattaaaagt gcaaggattg ctgggacgtc
     4741 gctgcccaac gccaatgtta tcaggctact ggaagaacga tccgttcagc ccggaagagg
     4801 actcacgctt aatcacctca tcatctgctg acggtaaatt attagagatc ccatttaacc
     4861 cggtgtatcg gaattttgac aaaggtcttc aggaaatcac cggctggatc gaaaaacgct
     4921 tgtgttaaaa atttgctaaa ttttgccaat ttggtaaaac agttgcatca caacaggaga
     4981 tagcaatgac gttaccgagt ggacacccga agagcagatt gatcaaaaaa tttaccgcac
     5041 taggcccgta tattcgtgaa ggtaagtgcg aagataatcg attctttttc gattgtctgg
     5101 ctgtatgcgt caacgtgaaa ccggcaccgg aagtgcgtga attctggggc tggtggatgg
     5161 agctggaagc gcaggaatcc cgttttacct acagctacca gtttggtctg ttcgataaag
     5221 caggcgactg gaagagtgtt ccggtaaaag atactgaagt ggttgaacga ctggagcaca
     5281 ccctgcgtga gtttcacgag aagctgcgtg aactgctgac gacgctgaat ctgaagctgg
     5341 aaccggcgga tgattttcgt gacgagccgg tgaagttaac ggcgtgagtg aaatgtgccg
     5401 gatgcatcac atccggcaat atctattaaa actgatacgt catcccaatc gcgacaatat
     5461 catcattatt aatattcaat ttgttatcgc tatccagttg gttgatttta taatcaacaa
     5521 atgctgacat atttttgttg aaataatacg tagcaccgac gtcgatataa ttaaccagat
     5581 cttcaccacc gatgccctca atatctttcc ctttcgataa gacataaccc agcgatggac
     5641 gcagaccaaa gtcaaactgg tattgagcga ccgcttcaaa gttctgtgtc ttattggcaa
     5701 agccgccagt tattggcgtc attttgcgag tttcagaata gaaagttgcc agataaatat
     5761 tattggcatc gtatttcaga cctgttgccc atgcttctgc acgcttgcct gtgccacggc
     5821 tttgcaggtt ctgctcgttg gtgcgatctg agttggtata ggccccacta atggcgaaat
     5881 cgctgccgcc aaagtcatat gtcaatgacg tgccgaagcc atcgccgttt tgctttttaa
     5941 cgtcgcggtt ttcgtttttc ccttgatatt gcagggttaa gttcaggcca tcgataacgc
     6001 cgaagaagtc ggtgttccga tacgtcgcca gaccgctggc gcgtttggtc ataaagttgt
     6061 cggtctgcgc cgaggagtcg ccaccaaatt ccggaaacat atcggtccag gcttccacgt
     6121 catacaacgc gcccaggtta cgaccataat cgaaagaacc caaatcttta tatttcaacc
     6181 cggcaaaagc gagacgcgtt ttttgctgtg cagtatcact ctctgcttta ttaccggcaa
     6241 actctgcttc ccaacgacca taaccagtca gttgatcgtt aatttgtgtt tcgcctttaa
     6301 aaccaaaacg gatataactc tggtcgccat ctttactgtc gttatcactc atataatgca
     6361 tggctttaac tttgccatag acatccagtt tattaccgtc tttgttatat atttctgcgg
     6421 cctgtacgga tgcagatgcc acaatgccca tcaccactaa tgccagagtg ctctttttca
     6481 ttttcattcc tgattttaat taacgcgcga atattcagcg ggagagcccc gttgaaaaca
     6541 ggaaagtttt taacctgaga ttgttaaaga tatattacag attaataata ttcttaaaat
     6601 gtggtaattt attaaatctg taataaaagc gtaaacaact gccgctaggc ttgctgatcc
     6661 cgcgcaacaa aacgccatgc tttgctcgca gatggttggc aaccgacgac agtcctgcta
     6721 aaacgttcgt ttgatatcat ttttcctaaa attgaatggc agagaatcat gagtgacagc
     6781 cagacgctgg tggtaaaact cggcaccagt gtgctaacag gcggatcgcg ccgtctgaac
     6841 cgtgcccata tcgttgaact tgttcgccag tgcgcgcagt tacatgccgc cgggcatcgg
     6901 attgttattg tgacgtcggg cgcgatcgcc gccggacgtg agcacttggg ttacccggaa
     6961 ctgccagcga ctatcgcctc gaaacaactg ctggcagcgg tagggcagag tcgactgatt
     7021 caactgtggg aacagctgtt ttcgatttat ggcattcacg tcgggcaaat gctgctgacc
     7081 cgtgctgata tggaagaccg tgaacgcttc ctgaacgccc gcgacaccct gcgtgcgttg
     7141 ctcgataaca atatcgttcc ggtaatcaat gagaacgatg ctgtcgctac ggcagagatt
     7201 aaagtcggcg ataacgataa cctttctgcg ctggcggcga ttctggcggg tgccgataaa
     7261 ctgttgctgc tgaccgatca aaaaggtttg tataccgctg acccgcgcag caatccgcag
     7321 gcagaactga ttaaagatgt ttacggcatt gatgacgcac tgcgcgcgat tgccggtgac
     7381 agcgtttcag gcctcggaac tggcggcatg agtaccaaat tgcaggccgc tgacgtggct
     7441 tgccgtgcgg gtatcgacac cattattgcc gcgggcagca agccgggcgt tattggtgat
     7501 gtgatggaag gcatttccgt cggtacgctg ttccatgccc aggcgactcc gcttgaaaac
     7561 cgtaaacgct ggattttcgg tgcgccgccg gcgggtgaaa tcacggtaga tgaaggggca
     7621 actgccgcca ttctggaacg cggcagctcc ctgttgccga aaggcattaa aagcgtgact
     7681 ggcaatttct cgcgtggtga agtcatccgc atttgcaacc tcgaaggtcg cgatatcgcc
     7741 cacggtgtca gtcgttacaa cagcgatgca ttacgccgta ttgccggaca ccactcgcaa
     7801 gaaattgatg caatactggg atatgaatac ggcccggttg ccgttcaccg tgatgacatg
     7861 attacccgtt aaggagctgg ccgatgctgg aacaaatggg cattgccgcg aagcaagcct
     7921 cgtataaatt agcgcaactc tccagccgcg aaaaaaatcg cgtgctggaa aaaatcgccg
     7981 atgaactgga agcacaaagc gaaatcattc tcaacgctaa cgcccaggat gttgctgacg
     8041 cgcgagccaa tggccttagc gaagcgatgc ttgaccgtct ggcactgacg cccgcacggc
     8101 tgaaaggcat tgccgacgat gtacgtcagg tgtgcaacct cgccgatccg gtggggcagg
     8161 taatcgatgg cggcgtactg gacagcggcc tgcgtcttga gcgtcgtcgc gtaccgctgg
     8221 gagttattgg cgtgatttat gaagcgcgcc cgaacgtgac ggttgatgtc gcttcgctgt
     8281 gcctgaaaac cggtaatgcg gtgatcctgc gcggtggcaa agaaacgtgt cgcactaacg
     8341 ctgcaacggt ggcggtgatt caggacgccc tgaaatcctg cggcttaccg gcgggtgccg
     8401 tgcaggcgat tgataatcct gaccgtgcgc tggtcagtga aatgctgcgt atggataaat
     8461 acatcgacat gctgatcccg cgtggtggcg ctggtttgca taaactgtgc cgtgaacagt
     8521 cgacaatccc ggtgatcaca ggtggtatag gcgtatgcca tatttacgtt gatgaaagtg
     8581 tagagatcgc tgaagcatta aaagtgatcg tcaacgcgaa aactcagcgt ccgagcacat
     8641 gtaatacggt tgaaacgttg ctggtgaata aaaacatcgc cgatagcttc ctgcccgcat
     8701 taagcaaaca aatggcggaa agcggcgtga cattacacgc agatgcagct gcactggcgc
     8761 agttgcaggc aggccctgcg aaggtggttg ctgttaaagc cgaagagtat gacgatgagt
     8821 ttctgtcatt agatttgaac gtcaaaatcg tcagcgatct tgacgatgcc atcgcccata
     8881 ttcgtgaaca cggcacacaa cactccgatg cgatcctgac ctgcgatatg cgcaacgccc
     8941 agcgttttgt taacgaagtg gattcgtccg ctgtttacgt taacgcctct acgcgtttta
     9001 ccgacggcgg ccagtttggt ctgggtgcgg aagtggcggt aagcacacaa aaactccacg
     9061 cgcgtggccc aatggggctg gaagcactga ccacttacaa gtggatcggc attggtgatt
     9121 acaccattcg tgcgtaaata aaaccgggtg atgcaaaagt agccatttga ttcacaaggc
     9181 cattgacgca tcgcccggtt agttttaacc ttgtccaccg tgattcacgt tcgtgaacat
     9241 gtcctttcag ggccgatata gctcagttgg tagagcagcg cattcgtaat gcgaaggtcg
     9301 taggttcgac tcctattatc ggcaccattt aaatcaataa gttacacatc attagtacgt
     9361 tccttatttc ttgactggga caaatttggg accgatgggt tcagaatcga gtctatttgc
     9421 cgtgcgtgtt cggtaaggtg attaggtgcg aggtgagcat atcgacgaac catttcgata
     9481 gactcccagc ctcccatttc ctgtaacact gataacggga ctccggcttg aaccagccaa
     9541 cttgcccagg tgtgtctcaa gtcgtgaaat ctgaaatcat caatacctgc tcgtctcagc
     9601 gccgctttcc aggctgtgtt tgcgtcatac cgcatcttcc tgactgttgg cgctttcgtt
     9661 ccgtctggtt tggtacagct ttccttatac acaaataccc aacggtgatg attcccgatt
     9721 tgttttttca atacgcgaca tgcagtatca ttcagcgcaa cgccaattgc gcggtttgat
     9781 ttactctctt ccgggtttat ccatgccacc cggcgctgca tgtctatttg ttgccattca
     9841 aggttgatga tgttcgagcg tcttaagcct gttgcaagtg caaattcaac aacagacttt
     9901 aatggctccg gacattcatc aatcagcctt tgtgcttcat gaggctccag ccagcggatc
     9961 cgtttattct ttggttgagg cactttaata attggtgcct tatccagcat tttccattca
    10021 cgctctgcgg ctcttagcag ggcctttata aatgaaagat gcgtagcctt cgttgcaacg
    10081 gacgctggtt ttggcgtgta ttctggaaca ggtttccctt tttttctgca tgcttctgcc
    10141 ctgagtttcc agttttcctc atgacgccgg ttcgtcattt tctgcattgc tgaataaatt
    10201 tttgattcag taatgtctct tagttgcatt cctgcgaaat gttgaagcca gaatccgatc
    10261 cggcttttgt catcgtccag tgatttttta tgtgctttct cttcaagcca cctgacacac
    10321 gcttcctcga acgttatatc aggaatttca ccaagtttgc tgacccgcca tgcttcagcc
    10381 tttagcttgt catggagttc tgtcgcctgc cttttgtcct ttgttccaag agactgttta
    10441 aatcttttac cgttcggcaa tgtgaaactg gcgtaccata tttcacctct gcggaagagt
    10501 gacattttct ttcctctgtt atgccatcac ccgcgctcac ctggacagta tgcagcggag
    10561 actgaagcgc cgcaatgcag gcttgtcgtg ttgtgaggta aggagattta ttcttagtgg
    10621 gatctttgcg tgttgcctgc agacgccctg tgcgtatcca gttaatggca gtcggtctgg
    10681 atatcttgag aaaatgacag gcctcatcta gcgtgaggct gtatggttcc attatttcac
    10741 ctcttgctgt gatattgttg aaaaatgaat gccagctcgt tgttgccaga cgatccaacc
    10801 gagagtcata tcccatgcca tgtattcgtt atcgccgttt tttgctctcc gactatctac
    10861 taagccaccg aaatgttttt ccataaataa ttcataggat tcgcgttcat ctggctctac
    10921 ttccagag
//
LOCUS       DAJVSY010000140        10904 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.141, whole genome shotgun sequence.
ACCESSION   DAJVSY010000140 DAJVSY010000000
VERSION     DAJVSY010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10904)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10904)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10904
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.141"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..185
                     /locus_tag="OQQ19_003266"
     CDS             <1..185
                     /locus_tag="OQQ19_003266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415678.1"
                     /note="interacts RssB preventing the degradation of the
                     stress sigma factor RpoS; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="anti-adapter protein IraM"
                     /protein_id="HCS1804780.1"
                     /translation="KLGIILQEKEYPITIYNIAPFNKNLWSLLKSSQECPPGESKITN
                     KCLHNSCIIKICSICY"
     gene            complement(253..1503)
                     /gene="icd"
                     /locus_tag="OQQ19_003267"
     CDS             complement(253..1503)
                     /gene="icd"
                     /locus_tag="OQQ19_003267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000444467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HCS1804781.1"
                     /translation="MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPA
                     MLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGP
                     LTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIY
                     AGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAI
                     ANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIV
                     IKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECAL
                     FEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYD
                     FERLMEGAKLLKCSEFGEAIIENM"
     gene            1675..2328
                     /gene="rluE"
                     /locus_tag="OQQ19_003268"
     CDS             1675..2328
                     /gene="rluE"
                     /locus_tag="OQQ19_003268"
                     /EC_number="5.4.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309634.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2457) synthase RluE"
                     /protein_id="HCS1804782.1"
                     /translation="MRQFIISENTMQKTSFRNHLVKRFSSQRSTRRKPENQPTRVILF
                     NKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPG
                     KRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER
                     KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYTLDNLANGEWREATE"
     gene            2338..2799
                     /gene="nudJ"
                     /locus_tag="OQQ19_003269"
     CDS             2338..2799
                     /gene="nudJ"
                     /locus_tag="OQQ19_003269"
                     /EC_number="3.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase NudJ"
                     /protein_id="HCS1804783.1"
                     /translation="MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETL
                     VEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDID
                     CCRWVSAEEILKASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTKGVI"
     gene            2853..3959
                     /gene="mnmA"
                     /locus_tag="OQQ19_003270"
     CDS             2853..3959
                     /gene="mnmA"
                     /locus_tag="OQQ19_003270"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HCS1804784.1"
                     /translation="MSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDD
                     GEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC
                     NKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSH
                     EQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQP
                     GKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQG
                     HEHPRLMSVGLIAQQLHWVDREPFTGTMRCSVKTRYRQTDIPCTVKALDDDRIEVIFD
                     EPVAAVTPGQSAVFYNGEVCLGGGIIEQRLPLPV"
     gene            3995..4636
                     /gene="hflD"
                     /locus_tag="OQQ19_003271"
     CDS             3995..4636
                     /gene="hflD"
                     /locus_tag="OQQ19_003271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high frequency lysogenization protein HflD"
                     /protein_id="HCS1804785.1"
                     /translation="MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSII
                     DMNPSSTLAVFGGSEANLRVGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSA
                     KGALDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQS
                     PQVPAKVRATLLAGIRAAVLWHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL"
     gene            4640..6010
                     /gene="purB"
                     /locus_tag="OQQ19_003272"
     CDS             4640..6010
                     /gene="purB"
                     /locus_tag="OQQ19_003272"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002950897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HCS1804786.1"
                     /translation="MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWL
                     QKLAAHAAIKEVPAFAADAIGYLDAIVANFSEEDAARIKTIERTTNHDVKAVEYFLKE
                     KVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGIKDLAVQ
                     YRDIPLLSRTHGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHI
                     AAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVW
                     GYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQ
                     RDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTV
                     MRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKARLKAMTPANYIGRAIT
                     MVDELK"
     gene            6178..6849
                     /gene="phoP"
                     /locus_tag="OQQ19_003273"
     CDS             6178..6849
                     /gene="phoP"
                     /locus_tag="OQQ19_003273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator PhoP"
                     /protein_id="HCS1804787.1"
                     /translation="MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHL
                     PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKP
                     FHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMET
                     LIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY
                     LFELR"
     gene            6849..8309
                     /gene="phoQ"
                     /locus_tag="OQQ19_003274"
     CDS             6849..8309
                     /gene="phoQ"
                     /locus_tag="OQQ19_003274"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     PhoQ"
                     /protein_id="HCS1804788.1"
                     /translation="MKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSF
                     DKTTFRLLRGESNLFYTLAKWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDV
                     PWLMKMIQPDWLKSNGFHEIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVA
                     VNVYPATSRMPKLTIVVVDTIPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSL
                     RPIEALAKEVRELEEHNRELLNPATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLT
                     HSLKTPLAVLQSTLRSLRSEKMSVSDAEPVMLEQISRISQQIGYYLHRASMRGGTLLS
                     RELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACK
                     YCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAR
                     EITEQYEGKIVAGESMLGGARMEVIFGRQHSAPKDE"
     gene            8385..9506
                     /gene="roxA"
                     /locus_tag="OQQ19_003275"
                     /gene_synonym="ycfD"
     CDS             8385..9506
                     /gene="roxA"
                     /locus_tag="OQQ19_003275"
                     /gene_synonym="ycfD"
                     /EC_number="1.14.11.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309600.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[50S ribosomal protein L16]-arginine
                     3-hydroxylase"
                     /protein_id="HCS1804789.1"
                     /translation="MEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLA
                     MESEVDSRLVSHQDGKWQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRE
                     LPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLL
                     QVDPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYV
                     LQRELGGNYYSDPDVPPRAHPADVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSR
                     HELDIAPPEPPYQPDEIYDALKQGDVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALD
                     ALASNIALTAENFGDALEDPSFLAMLAALVNSGYWFFEG"
     gene            complement(9555..10781)
                     /gene="pepT"
                     /locus_tag="OQQ19_003276"
     CDS             complement(9555..10781)
                     /gene="pepT"
                     /locus_tag="OQQ19_003276"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HCS1804790.1"
                     /translation="MDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEE
                     MGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGD
                     IALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKNI
                     PHGDIRVAFTPDEEVGKGAKHFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIV
                     GNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLAGMKGTVERADMH
                     YIIRDFDRKQFEARKCKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILD
                     IAQQAMRDCDIEPELKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEK
                     AVQVIVRIAELTAQRK"
BASE COUNT         2697 a         2788 c         2725 g         2694 t
ORIGIN      
        1 ttaagcttgg tattatcctt caggaaaaag aatatcctat tactatttat aacattgcac
       61 cattcaacaa gaatttatgg agtttactca aaagcagtca agagtgtcct ccaggagaaa
      121 gcaaaataac aaataaatgt ttacataata gttgcattat aaaaatatgc tcgatatgct
      181 attaataata tccacataaa taaaacaacg ggcgtgttat acgcccgttt caatatttaa
      241 ctcatggaga gattacatgt tttcgatgat cgcttcacca aactctgaac atttcagcag
      301 cttagcgcct tccatcagac gttcaaagtc ataagttacg gttttcgcgt tgatagcacc
      361 ttccatacct ttaacaatta aatcagccgc ttcagtccac cccatatggc gcagcatcat
      421 ctcagcggag aggatgatag agcctggatt tactttgtcc tgaccggcgt atttcggcgc
      481 agtaccgtgg gtggcttcaa acagggcgca ttcgtcaccg atgtttgctc caggagcgat
      541 accgataccg ccaacctgcg ctgccagggc gtcagaaatg tagtcaccgt tcaggttcat
      601 acaggcgata acatcatatt cagccggacg cagcaggatc tgttgcagga atgcatcagc
      661 aatcacgtct ttaatgacga tctctttgcc ggtgttcggg tttttaactt tcagccacgg
      721 gccgccgtcg atcagttcac cgccaaactc ttcacgcgcc agctggtagc cccagtcttt
      781 aaacgcgcct tcggtgaact tcatgatgtt gcctttgtgc accagagtca cagagtcacg
      841 atcgttagca attgcgtatt cgatcgctgc acgaaccaga cgtttggtgc cttcttccga
      901 acacggctta ataccgatac cacaatgttc cgggaagcga attttcttca cccccatctc
      961 ttcacgcagg aatttaatca ctttctcggc gtcggcagag tctgctttcc attcgatacc
     1021 cgcataaatg tcttccgagt tttcacggaa gataaccata tcggtcagtt cagggtgttt
     1081 aaccgggctt ggagtgccct gatagtaacg taccggacgc aggcagatgt agagatccag
     1141 ttcctggcgc agggcaacgt tcagagagcg aataccgcca ccaacaggag tggtcagcgg
     1201 acctttaatg gcaacgcgat attcacgaat cagatcaagg gtttcagcag gcagccagac
     1261 atcctgacca taaacctgtg tggatttttc accggtgtaa atttccatcc aggagatttt
     1321 acgctcgcct ttataggctt tctcgactgc agcgtcgacc actttcagca tggctggggt
     1381 tacatctaca ccgattccat caccttcaat gtaagggata atcggatttt caggaacgtt
     1441 gagtttgccg ttttgcaggg tgatcttctt gccttgtgcc ggaacaacta ctttactttc
     1501 cattcacctc tccttcgagc gctactggtt tgctcgtctg ccaccacgtt gcatatgcgt
     1561 ttgcgtcctg cgatacggat gctttagagc aattttttgt taatgatttg taattggctt
     1621 gtcaatacta ccctattgtt tgccgtcatg aaagatgcgc gttattaggc tataatgcgg
     1681 caattcataa tctctgaaaa taccatgcaa aaaacttctt ttagaaatca cctggttaag
     1741 cgattcagct cgcaacgttc taccaggcgt aaacctgaaa accagcccac gcgtgtgatc
     1801 ctgttcaata aaccctacga tgttcttccg cagttcaccg atgaagccgg acgcaaaaca
     1861 ttaaaagaat tcatcccggt tcagggcgtt tatgcagcag gtcgtcttga ccgcgatagc
     1921 gaagggttac tggtgctgac caataacggc gcgttgcagg cgcgtttaac ccagccgggc
     1981 aaacgcaccg ggaaaatcta ttatgtgcag gtggaaggta ttcccacaca agacgcactt
     2041 gaagccttgc gcaatggcgt aaccttaaat gatggcccta ccctgcccgc cggcgcggag
     2101 ctggttgacg aaccagcgtg gttatggccg cggaatccac caattcgtga acgcaaaagt
     2161 attcccacca gctggctgaa gatcacctta tatgaaggac gtaatcgcca ggtgcgccgc
     2221 atgaccgccc atgttggttt ccccacgctg cgactgattc gttatgcgat gggtgattac
     2281 actttggata accttgccaa tggcgaatgg cgagaagcaa cagaataagg atgcacaatg
     2341 tttaaaccac acgttaccgt tgcttgcgta gtgcacgcag agggtaaatt tttagtcgtt
     2401 gaagagacga ttaatggtaa agcgttatgg aaccaacctg ccgggcatct ggaagccgat
     2461 gaaaccttag tggaagctgc cgcccgtgag ctatgggaag aaaccggcat cagcgcgcaa
     2521 ccgcaacact ttattcgtat gcatcagtgg attgcgccag ataaaacgcc gtttttgcgt
     2581 ttcctctttg ccattgagct tgagcaaata tgcccgaccc agcctcatga cagcgatatc
     2641 gactgctgtc gttgggtcag cgccgaagaa attttaaagg cgtcaaatct tcgttcgccg
     2701 ctggtggcgg aaagtatccg ttgttatcaa agcgggcaac gctatccgct ggagatgatt
     2761 ggcgatttta actggccttt tacaaagggt gtcatctaaa aggctgcgtg atagaatacg
     2821 ccgccttgaa gttcaatgtc gtgagtgatc caatgtctga aaccgcaaaa aaagtaatcg
     2881 tcggcatgtc cggcggtgtc gattcctccg tttctgcctg gctgttgcaa caacagggat
     2941 atcaggttga aggcctgttt atgaagaact gggaagaaga cgacggtgag gaatattgca
     3001 cagcggcagc ggatctggct gatgcccaag ctgtctgcga caagctcggc attgaactgc
     3061 acaccgttaa ctttgctgcc gagtactggg acaacgtctt cgaactgttc cttgccgaat
     3121 ataaagccgg tcgcacgccg aatccggata ttctgtgcaa caaagagatc aaatttaaag
     3181 ctttcctcga atttgccgcc gaagatttag gtgccgatta tatcgctacc ggtcattacg
     3241 tacgtcgggc cgatgtcgat ggcaagagcc gcctgctgcg tggtctggac agcaataaag
     3301 accagagcta cttcctttat acgctcagcc atgagcagat tgcgcaaagc ctgttcccgg
     3361 tcggcgaact ggaaaaaccg caggtgcgta agattgctga agatcttggt ctggtcaccg
     3421 cgaagaaaaa agactctacc ggcatttgct tcattggcga acgtaaattc cgcgagttcc
     3481 tgggccgtta tctcccggcg caaccgggca aaatcattac cgtcgatggc gatgaaattg
     3541 gtgagcacca ggggctgatg tatcacactc tcggtcagcg taaaggtctg ggtatcggtg
     3601 gcaccaaaga aggcaccgaa gaaccgtggt atgtggtgga caaagacgtc gaaaacaaca
     3661 ttctggttgt tgcgcagggc catgaacacc cgcggctgat gtctgtcggg ttgattgccc
     3721 agcagttgca ctgggtcgat cgcgaaccat tcaccggtac tatgcgttgc tcggtaaaaa
     3781 cccgctatcg ccagaccgat atcccttgca ccgtcaaggc gctggacgat gatcgcattg
     3841 aagtgatttt cgatgaaccg gttgccgccg tgacgccggg ccagtctgcc gtcttctata
     3901 acggtgaagt gtgcctcggt ggcggtatta ttgagcagcg tctgccgctg ccggtctgat
     3961 tattatcttt acttaaaaca aggaagcagt gaacgtggca aagaattact atgacatcac
     4021 cctcgccctg gccggtattt gtcagtcggc acgcctggtg caacaactcg ctcaccaggg
     4081 gcattgtgat gccgatgcgc tacacgtctc actcaacagt attattgata tgaaccccag
     4141 ctcgacgctg gcggtttttg gcggtagcga agccaacctg cgcgtcgggc tggaaaccct
     4201 gctcggcgtg ctcaatgcca gcagtcgcca gggcttaaac gccgaattaa cccgctacac
     4261 actcagcttg atggtgcttg agcgcaaact ctcctcagcg aaaggcgcgc tcgacactct
     4321 gggcaaccgg atcaacggcc tgcaacgcca gctcgaacac ttcgatttac agtccgaaac
     4381 gctgatgagc gcgatggctg ctatctatgt tgatgtgatc agcccgcttg gcccgcgcat
     4441 tcaggtcacc ggttcccctg ctgtactgca aagcccacaa gtgccggcga aagttcgcgc
     4501 aaccctgctg gcaggcattc gcgccgccgt gctctggcac caggtcggcg gcggacgtct
     4561 gcaactgatg ttttctcgta atcgcctgac cactcaggca aaacaaattc ttgctcattt
     4621 aaccccggag ttgtgatcta tggaattatc ctcactgacc gccgtttccc ctgtcgatgg
     4681 acgctacggc gataaagtca gcgcgctgcg cgggattttc agcgaatatg gtttgctgaa
     4741 attccgtgta caagttgaag tacgttggct gcaaaaactg gccgcgcacg cagcgatcaa
     4801 ggaagttcct gcttttgctg ccgacgcaat cggttacctt gatgcaattg tcgccaattt
     4861 cagcgaagaa gatgccgcac gcatcaaaac catcgagcgt accactaacc acgacgttaa
     4921 agcggttgag tatttcctga aagaaaaagt ggcggagatc ccggaactgc acgcggtttc
     4981 tgaattcatc cactttgcct gtacttcgga agatatcaat aacctctccc acgcattaat
     5041 gctgaaaacc gcgcgtgatg aagtgatcct gccgtactgg cgtcaactga ttgatggcat
     5101 taaagatctc gccgttcagt accgcgatat cccgctgctg tctcgtaccc acggtcagcc
     5161 agccacgccg tcaaccatcg gtaaagagat ggcaaacgtc gcctaccgta tggagcgcca
     5221 gtaccgccag cttaaccagg tggagatcct cggcaaaatc aacggcgcgg tcggtaacta
     5281 taacgcccac atcgccgctt acccggaagt tgactggcat cagttcagcg aagagttcgt
     5341 cacctcgctg ggtattcagt ggaacccgta cactacccag attgaaccgc acgactacat
     5401 tgccgaactg tttgattgcg ttgcgcgctt caacaccatt ctgatcgact ttgaccgtga
     5461 cgtctggggt tatatcgccc ttaaccactt caaacagaaa accattgctg gtgagattgg
     5521 ttcttccacc atgccgcata aagttaaccc gatcgacttc gagaactccg aagggaatct
     5581 gggcctttcc aacgcggtat tacagcatct ggcaagcaaa ctgccggttt cccgctggca
     5641 gcgtgacctg accgactcca ccgtgctgcg taacctcggc gtgggtatcg gttatgcgct
     5701 gattgcgtat caatccaccc tgaaaggcgt gagcaaactg gaagtgaacc gtgaccatct
     5761 gctggatgag ctggatcaca actgggaagt gctggctgag ccaatccaga cagttatgcg
     5821 tcgctatggc atcgaaaaac cgtacgagaa gctgaaagag ctgactcgtg gtaagcgcgt
     5881 tgacgccgaa ggcatgaagc agtttatcga cggtctggcg ttgccagaag aagagaaagc
     5941 ccgcctgaaa gcgatgacgc cggcaaacta cattggtcgc gccatcacca tggttgatga
     6001 gctgaaataa actcgtatca gtgccggatg gcgatgctgt ccggcctgct tattaagatt
     6061 atccgctttt tattttttca ctttacctcc cctccccgct ggtttattta atgtttaccc
     6121 ccataaccac ataatcgcgt tacactattt taataattaa gacagggaga aataaaaatg
     6181 cgcgtactgg ttgttgaaga caatgcgttg ttacgtcacc accttaaagt tcagattcag
     6241 gatgctggtc atcaggtcga tgatgcagaa gatgccaaag aagccgatta ttatctcaat
     6301 gaacatttac cggatattgc gattgtcgat ctcggattgc cagacgagga cggtctgtca
     6361 ctgattcgcc gctggcgtag caatgatgtt tcactgccga ttctggtatt aaccgcccgt
     6421 gaaagctggc aggacaaagt cgaagtatta agtgctggtg ctgatgatta cgtgactaaa
     6481 ccatttcata ttgaagaggt gatggcgcga atgcaggcat taatgcggcg taatagcggt
     6541 ctggcttcac aggtcatttc gctaccaccg tttcaggttg atctctctcg ccgtgaatta
     6601 tctattaatg acgaagtgat caaactgacc gcgttcgaat acaccattat ggaaacgttg
     6661 atacgcaata atggcaaagt ggtgagcaaa gattcgttaa tgctccaact ctatccggat
     6721 gcggagctgc gggaaagcca taccattgat gtactgatgg gacgtctgcg caaaaaaatt
     6781 caggcacaat atccgcaaga agtgattact accgttcgcg gccagggcta tttgttcgaa
     6841 ttgcgctgat gaaaaaatta ctgcgtcttt ttttcccgct ctcgctgcgg gtacgttttc
     6901 tgttggcaac ggctgcggta gtactggtgc tttcgcttgc ctacggaatg gtcgcgctga
     6961 tcggttatag cgtcagtttc gataaaacta cgtttcggct gttacgtggc gagagcaatc
     7021 tgttctatac ccttgcgaag tgggaaaaca ataagttgca tgtcgagtta cccgaaaata
     7081 tcgacaagca aagccccacc atgacgctaa tttatgatga gaacgggcag cttttatggg
     7141 cgcaacgtga cgtgccctgg ctgatgaaga tgatccagcc tgactggctg aaatcgaatg
     7201 gttttcatga aattgaagcg gatgttaacg ataccagcct cttgctgagt ggagatcatt
     7261 cgatacagca acagttgcag gaagtgcgag aagatgatga cgacgcggag atgacccact
     7321 cggtggcagt aaacgtctac ccggcaacat cgcggatgcc aaaattaacc attgtggtgg
     7381 tggataccat tccggtggag ctaaaaagtt cctatatggt ctggagctgg tttatctatg
     7441 tgctctcagc caatctgctg ttagtgatcc cgctgctgtg ggtcgccgcc tggtggagtt
     7501 tacgccccat cgaagccctg gcaaaagaag tccgcgaact ggaagaacat aaccgcgaat
     7561 tgctcaatcc agccacaacg cgagaactga ccagtctggt acgaaacctg aaccgattgt
     7621 taaaaagtga acgcgaacgt tacgacaaat accgtacgac gctcaccgac ctgacccata
     7681 gtctgaaaac gccactggcg gtgctgcaaa gtacgctgcg ttctctgcgt agtgaaaaga
     7741 tgagcgtcag tgatgctgag ccggtaatgc tggagcaaat cagccgcatt tcacagcaaa
     7801 ttggctacta cctgcatcgt gccagtatgc gcggcgggac attgctcagc cgcgagctgc
     7861 atccggtcgc cccactgctg gacaatctca cctcagcgct gaacaaagtg tatcaacgca
     7921 aaggggtcaa tatctctctc gatatttcgc cagagatcag ctttgtcggt gagcagaacg
     7981 attttgtcga ggtgatgggc aacgtgctgg ataatgcctg taaatattgc ctcgagtttg
     8041 tcgaaatttc tgcaaggcaa accgacgagc atctctatat tgtggtcgag gatgatggcc
     8101 ccggtattcc attaagcaag cgagaggtca ttttcgaccg tggtcaacgg gttgatactt
     8161 tacgccctgg gcaaggtgta gggctggcgg tagcccgcga aatcaccgag caatatgagg
     8221 gtaaaatcgt cgccggagag agcatgctgg gcggtgcgcg gatggaggtg atttttggtc
     8281 gccagcattc tgcgccgaaa gatgaataaa tatgtccata cttcacgcat tacgttaagc
     8341 atccgttata atcggttgca gataccagcc tgtggatgct taacatggaa taccaactca
     8401 ctcttaactg gcccgatttt cttgaacgtc actggcagaa acgcccggtg gtgttaaaac
     8461 gcggctttaa taattttatt gacccgatct ctccagacga gttggcgggt ctggcgatgg
     8521 aaagcgaagt tgacagtcga ctggtcagtc accaggatgg caaatggcag gtcagccacg
     8581 gcccgttcga aagctacgat catctcggtg aaaccaactg gtcattactg gtacaggcag
     8641 tgaaccactg gcatgagccg accgccgcgc tgatgcgacc gttccgtgaa ctaccggact
     8701 ggcgtattga tgatctgatg atttcttttt ctgtacctgg cggcggcgtc ggcccgcatc
     8761 tcgatcagta cgacgtgttt atcattcagg gtaccggacg tcgtcgctgg cgagtgggcg
     8821 aaaagctgca aatgaaacag cactgcccac atccggatct gttacaggtc gatccgttcg
     8881 aagccatcat cgatgaagag ctggagcctg gtgatattct ttatattccg ccaggattcc
     8941 cgcatgaagg ctacgcgctg gaaaatgcga tgaactattc cgtgggcttt cgcgcgccaa
     9001 atacacggga actgattagt ggatttgccg attatgtgct gcaacgtgaa ctgggcggca
     9061 actactacag cgatcctgat gttccacctc gcgctcatcc tgcggatgtt ctgcctcaag
     9121 agatggataa actgcgtgag atgatgctcg aattgatcaa ccagccggaa cactttaagc
     9181 aatggtttgg cgagtttata tcccagtcac gtcatgaact ggatatcgcg ccgccggaac
     9241 cgccttatca gccagatgaa atctacgatg cgctgaaaca aggtgatgtg ctggtgcgcc
     9301 tgggtggtct gcgcgtattg cgcattggcg acgacgtgta tgccaatggt gagaagatcg
     9361 attccccgca ccgtccggca ctggatgcac tcgccagcaa cattgcgctg actgcggaga
     9421 attttggcga tgcgctggaa gatccgtcat tcctcgcgat gctcgcggcg ctggtcaata
     9481 gcgggtattg gttcttcgaa gggtaagttt ggatttaagc cggatgcggc atcacatgcc
     9541 gcatcccttt tcgcttactt ccgttgcgcc gttaactcgg caatacggac gatcacctgc
     9601 accgcttttt ccataccttc cagagtcaca aactcatgct taccatgata gttgtaaccg
     9661 ccagtgaaca agttcgggca cggtaatccc ataaacgaca actgcgcgcc gtcggtaccg
     9721 ccgcggatcg gtttcagttc cggttcaata tcgcagtcac gcattgcctg ctgggcgata
     9781 tcgagaatat gcggatgctc aaccactttc tcgcgcatat tgtagtaact gtcttcaatc
     9841 accagttcaa tgtagcaatc aggatgtaac cctttgccca cttttttggc gatctccatc
     9901 attttacatt tacgcgcttc aaactgttta cggtcgaaat cacggatgat gtagtgcata
     9961 tcggcccgtt caacggtgcc tttcatgccc gccaggtgat agaaaccttc atagccttct
    10021 gtcatttccg ggctttcatc cgccggaact tccgcatgaa tacgtgccgc cagcgacagc
    10081 gcatttacca tcactccttt cgccgtgccc ggatgaacat tgttaccgac aattttgata
    10141 ttgaccgatg cggcgttgaa gttttcaaac tccagttcgc ctacgccacc accgtcaaca
    10201 gtgtaagccc agcgggcatc gaaggcatca acatcaaaat gtttcgcccc tttgcccact
    10261 tcttcatccg gggtaaaggc gacgcgaata tcaccatgcg gaatgttttt ctgttgcaat
    10321 accgccagcg cggtcatgat ttctgcaata cctgctttgt catcggcacc taacaaggtt
    10381 ttaccatcgg tggtaatcaa tgtctgaccc agtagctgat gcagcaccgg gaacataacc
    10441 ggtgataaaa cttcatcgcc gatacccagc gcaatatcgc caccgcgata gttttcaaca
    10501 atttgcggat taacattttt gccgctgcaa tccggtgagg tatccacatg agaaataaag
    10561 ccaatcgccg ggatatcgcc agggacgtta gccggtaacg tcgccatcaa agtgcccttc
    10621 tcacttaagg tcacattgat aagccccatt tcttcgagct gctctttcag cagatgcaat
    10681 aacttccatt ggccttccgt gctgggaacc tgtctcaccc ctgcttttga ttgggtatcc
    10741 agagacacgt agttcaaaaa tcgctcaagt agtttatcca tgtagtcacc ctcacttttt
    10801 gtgacaacat tattaagaag caagaaaaga caaatattgc gtcaggtcac ttttacccct
    10861 gcaagcggga atatttatca gcattacctt aatgaatata aagc
//
LOCUS       DAJVSY010000141        10897 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.142, whole genome shotgun sequence.
ACCESSION   DAJVSY010000141 DAJVSY010000000
VERSION     DAJVSY010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10897)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10897)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10897
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.142"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(228..2087)
                     /gene="gss"
                     /locus_tag="OQQ19_003277"
     CDS             complement(228..2087)
                     /gene="gss"
                     /locus_tag="OQQ19_003277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutathionylspermidine
                     amidase/synthase"
                     /protein_id="HCS1804791.1"
                     /translation="MSKGTTSQDAPFGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVF
                     RSYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQ
                     AFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQ
                     WTRELEMVVENGCYTLKDTFDDTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLEN
                     KGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHLMYLH
                     ATDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNAD
                     SASCHTEAGLILERWAEQGYKGNGFNPAEGLINELAGAWKHSRARPFVHIMQDKDIEE
                     NYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWKTWAWETAFDQ
                     IREVSDREFAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLF
                     PHHRYLLDTDFTVNDELVKTGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGKFAEQKNI
                     YQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGDESLVIKKESDIEPLIVVKK"
     gene            2292..3158
                     /gene="yghU"
                     /locus_tag="OQQ19_003278"
     CDS             2292..3158
                     /gene="yghU"
                     /locus_tag="OQQ19_003278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent disulfide-bond
                     oxidoreductase"
                     /protein_id="HCS1804792.1"
                     /translation="MTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHP
                     LQLYSLGTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIP
                     ALRDHTHNPPICVFESGSILLYLAEKFGYFLPQDLAKRTETMNWLFWLQGAAPFLGGG
                     FGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGN
                     VVLGGVYDAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDAS
                     DFETNTEDKRQG"
     gene            complement(3281..3529)
                     /gene="hybG"
                     /locus_tag="OQQ19_003279"
     CDS             complement(3281..3529)
                     /gene="hybG"
                     /locus_tag="OQQ19_003279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation factor HybG"
                     /protein_id="HCS1804793.1"
                     /translation="MCIGVPGQVLAVGEDIHQLAQVEVCGIKRDVNIALICEGNPADL
                     LGQWVLVHVGFAMSIIDEDEAKATLDALRQMDYDITSA"
     gene            complement(3542..3883)
                     /gene="hypA"
                     /locus_tag="OQQ19_003280"
     CDS             complement(3542..3883)
                     /gene="hypA"
                     /locus_tag="OQQ19_003280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HCS1804794.1"
                     /translation="MHELSLCQSAVEIIQRQAEQHDVKRVTAVWLEIGALSCVEESAV
                     RFSFEIVCHGTVAQGCDLHIVYKPAQAWCWDCSQVVEIHQHDAQCPLCHGERLRVDTG
                     DSLIVKSIEVE"
     gene            complement(3876..4364)
                     /gene="hybE"
                     /locus_tag="OQQ19_003281"
     CDS             complement(3876..4364)
                     /gene="hybE"
                     /locus_tag="OQQ19_003281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase-2 assembly chaperone"
                     /protein_id="HCS1804795.1"
                     /translation="MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSD
                     FTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGV
                     SQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGE
                     NA"
     gene            complement(4357..4851)
                     /locus_tag="OQQ19_003282"
     CDS             complement(4357..4851)
                     /locus_tag="OQQ19_003282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HCS1804796.1"
                     /translation="MRILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTA
                     GMELLGDMANRDHLIIADAIVSKKNTPGTMMILRDEEVPALFTNKISPHQLGLADVLS
                     ALRFTGEFPKKLTLVGVIPESLEPHIGLTPTVEAMIEPALEQVLAALRESGVEAIPRE
                     AIHD"
     gene            complement(4851..6554)
                     /gene="hybC"
                     /locus_tag="OQQ19_003283"
     CDS             complement(4851..6554)
                     /gene="hybC"
                     /locus_tag="OQQ19_003283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 large subunit"
                     /protein_id="HCS1804797.1"
                     /translation="MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEI
                     VKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTH
                     DHIVHFYQLSALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVA
                     SGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNL
                     AVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRG
                     KGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHS
                     WYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRE
                     STQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNI
                     GKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGP
                     RNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV
                     L"
     gene            complement(6551..7729)
                     /gene="hybB"
                     /locus_tag="OQQ19_003284"
     CDS             complement(6551..7729)
                     /gene="hybB"
                     /locus_tag="OQQ19_003284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase cytochrome b subunit"
                     /protein_id="HCS1804798.1"
                     /translation="MSHDPQPLGGKIISKPVMIFGPLIVICMLLIVKRLVFGLGSVSD
                     LNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLG
                     GLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWK
                     VSLKRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSLLTAF
                     IMGFSIVIFEGSLVQAGLRGNGPDEKSLFVKLTNTISVLLAIFIVLRFGELIYRDKLS
                     LAFAGDFYSVMFWIEVLLMLFPLVVLRVAKLRNDSRMLFLSALSALLGCATWRLTYSL
                     VAFNPGGGYAYFPTREELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA
                     "
     gene            complement(7719..8705)
                     /gene="hybA"
                     /locus_tag="OQQ19_003285"
     CDS             complement(7719..8705)
                     /gene="hybA"
                     /locus_tag="OQQ19_003285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 operon protein HybA"
                     /protein_id="HCS1804799.1"
                     /translation="MNRRNFIKAASCGALLTGALPSVSHAAAENRPPIPGSLGMLYDS
                     TLCVGCQACVTKCQDINFPERNPQGEQTWSNNDKLSPYTNNIIQVWTSGTGVNKDQEE
                     NGYAYIKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVP
                     KYDYNNPFGALHKCELCNQKGVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRL
                     ALKPGSEYHYPRQTLKSGDTYLHTVPKYYPHLYGEKEGGGTQVLVLTGVPYENLDLPK
                     LDDLSTGARSENIQHTLYKGMMLPLAVLAGLTVLVRRNTKNDHHDGGDDHES"
     gene            complement(8708..9826)
                     /gene="hybO"
                     /locus_tag="OQQ19_003286"
     CDS             complement(8708..9826)
                     /gene="hybO"
                     /locus_tag="OQQ19_003286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 small subunit"
                     /protein_id="HCS1804800.1"
                     /translation="MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVT
                     NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK
                     HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAW
                     GGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKN
                     RPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQ
                     FCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSA
                     GAIGLLGGVVGLVAGVSVMAVRELGRQQKKDNADSRGE"
     gene            complement(10015..10302)
                     /locus_tag="OQQ19_003287"
     CDS             complement(10015..10302)
                     /locus_tag="OQQ19_003287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2623 domain-containing protein"
                     /protein_id="HCS1804801.1"
                     /translation="MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMY
                     EKTGDRQLSAWEAGILTRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN"
     gene            complement(10421..10897)
                     /locus_tag="OQQ19_003288"
                     /pseudo
     CDS             complement(10421..10897)
                     /locus_tag="OQQ19_003288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311911.3"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
BASE COUNT         2659 a         2990 c         2692 g         2556 t
ORIGIN      
        1 caaagtgaaa tatcattttt taacgataaa aagagtgtta tttcttgtgt atcagacaat
       61 aagcattcat tcaaaacctt tagaaataat caaaacacag gtattccact ggttaatata
      121 ttcacatatg aaatgaataa atattagaac atataaatat tgaatatttt gattaatccc
      181 cgtactgatt attcttcata atcagtacgg ggttgctaca acatgtatta ctttttcacc
      241 acaattaacg gttcaatatc actctctttt ttgatgacca gtgattcatc accgcgcaaa
      301 cacgtcccac cgtagttgcc gcccacggtg aaggtacata cctgaatgta tttaccgtcc
      361 actttcggca aacaccacag ttgctgatag atgtttttct gctcggcaaa tttaccgctg
      421 gttttgtcca gcacctcttc atgatggctg accaggtcga tattgctacc acagcgaccg
      481 gcaatcggtt tcactgcgta acctgttttc accaattcat cattaacagt gaaatcggta
      541 tccagcaggt aacgatggtg cgggaacagc gaccagagga tcggcagaat cgctttgttg
      601 ccggggatca ccgtccacag cggctcaaag actagcactt ccgggcgcag caatacgtcg
      661 ataagacgca cttcgttttg cggatgaccg gtacggattg gcaccgcagc aaactcacgg
      721 tcgctaactt cacgaatctg atcaaacgcg gtttcccacg cccaggtttt ccacacgcag
      781 ttaaccagtc gcccttcccc atcaatcagt tgcccggcag catcccagcc cagttcatcc
      841 aatccacgca agatacgcgt ttcaaagccc gcctggtgca gcgcctgctc cataaactgc
      901 gcgtgatagt tttcctcgat atctttgtcc tgcatgatat ggacaaacgg acgtgcacga
      961 ctgtgtttcc aggcaccagc caattcgtta atcagccctt ccgccggatt gaagccgttg
     1021 cctttatagc cctgctccgc ccaacgttcg aggatcaagc ccgcttcggt atgacaggag
     1081 gcggagtcgg cgttgtactc gtaaaccttc aggccacgct catccatgca gaaatccata
     1141 cgaccagtga tcatatggtg acggcgacgc tgccaggaga gacgcaaacg tggccagagg
     1201 attttcggaa tgtcgaacag cgccagcagg ttgtcatctt tcagtacctt gtcggttgcg
     1261 tgaagataca tcaggtgcag ctcgttggtg gctttaatta gctcctgctc ggcactctcg
     1321 gtaatggtgt agtaatgata aggatcctga ttgatcacct gaccgttggc ctgcacatag
     1381 gcgttttgca gcggatcttt ttcatccagc catttaccgt caaactggcc tttgttttcc
     1441 aggcgcgctc cgctgatttt cagcagctcg cctgcaattt ccggctgcgg taagctgtat
     1501 tcagtatctt ccgtctggat catccagccc agaatggtgg tgtcatcaaa agtgtctttc
     1561 agggtatagc agccgttttc gaccaccatc tccagctcac gcgtccactg ttgcccttgc
     1621 ggcaacgggg aatgaatcac gttctgttcc gcaatacgga ctttgttgcc atgcaattgg
     1681 gtaatgatgg cgacatggcc agtgtcttta aattcaccgc ctttatccca gataagaagc
     1741 gcacccgcga ccggcgcacg cggcgagccg ttaggaaatg cctgcaatgg caggatgttg
     1801 tcattaacca cttctcgcag gaagcgcagc gagaaaatct cccacgccat acccacgtca
     1861 gtaaagacca caccgtaatt cagaaagaga aaacggcgag caaattcaac gcattgccac
     1921 ttgtggccca tatattcgtc gtcgatatag ctacggaata cggcgtcatc ttcgtattcc
     1981 tgcggatcga gagaactgta atctgaagag tagattgcta ccccacctgg ggcgtagccc
     2041 aataatgtcc cgaacggggc atcctggctg gtcgttcctt tgctcatcac tttaccttta
     2101 acaatacaac ctaagcagtt ggcgtaattg ttgtgctctg attacctgct cagcgacatt
     2161 aaccggacag aggtcagact aatcatacac ctcatcgcag cggctggcgc aaagggttaa
     2221 aaaattcaca ttctgtacag caagtgacct gccacactgc ttcaacacta ccactcagaa
     2281 ggcaactcac tatgacagac aatacttatc agcccgcgaa agtctggacg tgggataaat
     2341 ccgctggcgg cgcgttcgcc aatatcaatc gcccggtttc tggtccgacg catgaaaaaa
     2401 cgctgcccgt tggcaaacac ccattgcaac tttattcgct gggaacgccg aacggtcaga
     2461 aagtaacgat tatgcttgag gagctgctgg cgctgggcgt tactggtgca gagtacgacg
     2521 cctggctgat tcgtattggc gatggcgatc aattctccag cggctttgtc gaagtgaacc
     2581 caaactcgaa gatcccggcg ctgcgcgatc atacgcataa tccgccgatc tgtgtgtttg
     2641 aatctggttc gatcctgctt tatctggcgg agaaatttgg ctacttcctg ccgcaggatt
     2701 tggcaaagcg tactgaaacg atgaactggc tgttctggtt acagggcgcg gcaccgttcc
     2761 tcggcggtgg ttttggtcac ttttaccatt acgcaccggt aaagattgag tacgccatca
     2821 accgctttac catggaagcc aaacgtctgc tcgacgtgct ggataagcaa ctggcgcagc
     2881 ataagtttgt tgcgggcgat gagtacacca ttgcggatat ggcgatttgg ccgtggtttg
     2941 gcaacgtggt gttaggtggt gtgtatgatg ccgctgagtt tcttgatgcg ggcagttata
     3001 agcatgtaca acgctgggcg aaagaagtag gcgaacgtcc ggcggtgaaa cgtgggcgta
     3061 ttgttaaccg caccaacgga ccgctgaatg agcagttgca tgagcgccat gacgccagtg
     3121 atttcgagac gaatacggaa gataagcgtc aggggtaagg gttggtgttc gtcgcagcaa
     3181 gccatccagg ccggataagg cgttcacgcc gcatccggca atcgtgcaca atgcctgatg
     3241 cgacgctgcc gcgtcttatc aggcctacga aagctaatca tcacgcgctg gtaatgtcgt
     3301 aatccatttg gcgcagtgcg tctaatgtgg ctttggcttc atcttcgtcg atgatgctca
     3361 tggcaaatcc gacgtgtacc agcacccact ggcccagtag atcggcaggg ttaccttcac
     3421 aaatcagggc gatattcacg tcgcgcttga taccacatac ttcaacctgc gcaagctggt
     3481 gaatatcttc accgacagcc agcacctggc ctggaacgcc aatacacatt attaactccg
     3541 gttattcaac ttcaatactt ttgacgatca gcgaatcgcc ggtatcgaca cgcaaccgct
     3601 cgccgtgaca gagcggacac tgcgcatcgt gctgatgaat ctccaccacc tggctgcaat
     3661 cccagcacca ggcctgggcg ggtttataga cgatatgtaa atcgcaccct tgcgccaccg
     3721 ttccgtggca gacaatttca aaactaaaac ggacggcgct ctcctcaacg caggagagcg
     3781 cgccaatttc cagccacacg gcggtgacgc gcttaacatc gtgctgctcc gcctgccgtt
     3841 ggataatttc aacggcgctc tggcaaagcg acaactcatg cattttcgcc actcctgcga
     3901 ccaaacagca gggcgcgacg ccctgcgtgt ggtacatccg gattcgtgac tggcagcgaa
     3961 aggatcattc gtgcgcagtc atccgtcagg cgttggccct cttcaatcga catactgtgc
     4021 gaaagcggtg acatcagcga acaggagagg tattgcgaaa caccgtccag ttcgccaacg
     4081 gtaaaggtca tggtgccata cggcagttgc agaccaattt tttcactcac tttgcgcagc
     4141 ggccagagtt gatccgggcc ggggaagata actgcactca gcatccacgg ggtgatcaca
     4201 caccccgtcc actgaccttc gaacagcgta aaatcagaaa catacaccgg cattgaagga
     4261 tgcagaaaag agagatcgtg catcgaacgc cgggcaattt cttcaaacgc tgcctgtact
     4321 tgcgccttcg gggaggtctg gaaacctgct atctcttcag tcatgaatcg cctcccgtgg
     4381 gatggcttcc acgcctgatt cgcgcagcgc agccagaacc tgctcaagcg caggttcaat
     4441 cattgcttca accgtcggcg ttaagccgat gtgtggctcc agcgattccg ggatcacgcc
     4501 gaccagggtc agctttttcg gaaactcacc ggtgaagcgc agggccgaca atacgtcggc
     4561 caggccaagc tgatgcggag agattttgtt ggtaaacaac gccggaactt cttcatcccg
     4621 caggatcatc atcgttcccg gcgtgttctt tttcgacaca atggcatccg caataatcag
     4681 atgatcgcga tttgccatgt cgccaagcag ctccattccc gccgtgccgc catcgaggat
     4741 ctcaacataa tccggcagaa tgtatcgttg ctctaacgct tcgacaatcc gcacaccgat
     4801 ggcttcatcg gtcagcaaaa tattgccgac ccctaagact aaaatacgca ttacagaacc
     4861 ttcactgaaa ccacttcgtt gccgtcggca tccactacgt gtaccgcaca ggccatgcac
     4921 gggtcgaagg agtgaatggt acgcaccact tccagcggtt tattcggatc agcaaccggt
     4981 gtacccacca gcgactgctc gtaaggaccg acgtcatcat tgaagttacg cggaccagag
     5041 ttccaggttg atggaacaac tgcctggtag ttactgataa taccgtcttt aataaccatc
     5101 cagtgagaga gcataccgcg cggcgcttcg aggaagccaa cacctttgaa ctcacccgtt
     5161 gccggaatgt tcggtttcac aaaggtggtg tgatcgcctt tgccgatatt ggtgatcagt
     5221 gcactgtatt gattttgcag gatatcctgc aattcgcagc agtgaacggt acgaccaata
     5281 atacggccca gcgtggagtg cagctgcgcc acttccagcg tgttgccagt cagtttctga
     5341 taaatcgcaa cgatttcatt cagtttgttc tgggtagatt cgcgacctgc cgccagtttc
     5401 accagcatat tagccagcgg acccacttct accgttttgc cgtagaaagt cggtgatttc
     5461 acccaggaat atttcccgtc gtcagaccaa ccatcataag ccggaatggt ggtaccttcc
     5521 cacggtgcct gcggcgcttc gtctttatac caggagtgct tcgcgctttc ctgaatgcct
     5581 ttgatcaggt attcatcgga atgagaagtg atcggacgat acgaggacag atccgcattc
     5641 tcaatgtagc cgcccgggaa caggaagctg ccgtttttac tgtcggtcgg gaattccggc
     5701 acgctcaggt agttcaccgc acctttaccg cgcgtcagcc attccgggta gaacgcggca
     5761 ataactgcgg tatcaacctt ataaacctgt tcaacaaagt cgctcagctt gtcgatgaaa
     5821 gacttgatgt acatcaggcg ctcaaggttc agcacgccca aaccgtcgag gttgatcggg
     5881 ttcgcgacac cacctaccgc caggttctga atgtgcggcg ttttaccgcc cagcagcgcc
     5941 acgacgcggt tagcgtcacg ctggcactcc agcgcctgca ggtagtgcgc taccgcaatc
     6001 aggttcactt ccggcggcag tttcatcgcc gggtgacccc agtagccatt ggcgaaaata
     6061 cccaactgac cgctggcaac cagatctttg atcttgttct gaactttagt gaactcttcc
     6121 ggactgttca gatgccaggt cgaaacgcct ttcagcattt cggaggcttt ggttgggtca
     6181 gcttgcagtg cagaagtgat gtccacccag tccagcgccg aaagctgata gaaatgaacg
     6241 atatggtcat gcgtggtgtg cgcagccaga atgatgttac ggatgtattg cgcgttaacc
     6301 ggaacgtcga tattcagcgc actttctgcc gcacgaacgg aagacagcgc gtgagtggta
     6361 gtacatacgc cacagatacg ttgcacaatc atccatgcat cgcgcggatc gcggtttttc
     6421 acgatctctt ccatgccgcg ccacatggta ccggaagccc atgctttcga aacgacgcca
     6481 ttttcgattt cgcaatcgat gcgtaaatgc ccctcaatac gggttaccgg atcaatagta
     6541 attctctggc tcatgctttg ctcgcctcat gacgattatg atcgttttgt tttaaaggag
     6601 gaagtatcgg cagtagacga atgagtacga tgtaagcgca aatctcaata gccacaaaac
     6661 caatagaaat caacagttct tccctggtcg ggaagtaggc gtaaccgccg cccgggttga
     6721 atgccaccag cgaataggtc agacgccagg ttgcacaacc taacagtgcg ctcagtgctg
     6781 acaggaacag catgcgggaa tcattacgca gcttcgccac acgcagaacg accagcggga
     6841 agagcatcag caggacttca atccagaaca tcacggagta gaagtcaccg gcaaacgcta
     6901 acgacagctt gtcgcgatag ataagctcgc caaagcgcag cacgataaaa atcgccagca
     6961 acacactgat ggtgttggtc agcttgacga acagactctt ttcatccgga ccgttgccac
     7021 gcagacccgc ctgcaccagc gaaccttcaa agatgacaat cgagaagccc atgatgaacg
     7081 ccgtcagcag cgagaacagc ggcaacattt catagctctg ccacaacgga tgcaccttgt
     7141 agcccgccga gatcatcagt gaccccattg aagactggtg catggtcggc aacagcgcgc
     7201 caagtgcaat gatgaagaac atcaccttgt tcagacgctt gagagaaacc ttccagccca
     7261 gacgttcaaa cagtgccgga gcaaactcca gtgccatcac gccgatatag atggtcatac
     7321 agaccgccgt ctcgaacagt accgagttca cgttgaagtg acccggaatg tagaagtacg
     7381 gcaggttcca gtagcgaccc acgtcgatag tgatcgacaa gccacccagt gagtaaccaa
     7441 acagactcgc caacagcgcc ggacgcacca gcggatggta ttgcccacgg ttaaagacgt
     7501 ataccgccca cgccagcgcc cagccgccac aggcaaagcc ggtaccaatc agcaggtcaa
     7561 acgcgatcca cacgccccac gggaagccgc cgttcaggtc agagacagag cccagaccga
     7621 acaccagacg cttcacaatc aggagcatac agatgacgat taacggtcca aaaatcatga
     7681 ccggtttact gatgattttg ccgcccagcg gttgtggatc atgactcatg atcgtctcct
     7741 ccgtcgtgat ggtcgttttt ggtgttgcga cgaaccagca cggttaagcc cgccagcaca
     7801 gccagtggta gcatcatgcc tttatacagg gtgtgttgaa tattttcgga acgcgcaccg
     7861 gtagaaagat cgtccagttt cggcaggtcg agattttcat aaggcacacc cgtcagtacc
     7921 agaacctgag taccgccgcc ctctttctcg ccgtacagat gcggataata tttcggcacc
     7981 gtatgcaggt aagtgtcgcc agatttcagc gtctgacgcg gatagtggta ttcgctgcca
     8041 ggcttcagcg ccagacgttt tttcgcctcc gccatcagct cttcacgcgt accgaaaatc
     8101 accgcgcccg ccgggcacac ttctacgcag ccaggcagac cgcctttatc gagacgttcc
     8161 acacctttct ggttgcacag ctcgcactta tgcagcgcac caaacgggtt gttgtagtcg
     8221 tacttcggca cgttgtacgg acaggcgacc atgcagtaac ggcaaccggt gcacacgtct
     8281 ttgtcgtaat ggacaatgcc ggttttcgga tcttttttca gtgcagagac cgggcacaca
     8341 gagacacagt tcggatcgac gcagtgcata cactgtttct taatgtacgc gtagccgttc
     8401 tcctcctggt ctttgttgac ccctgtgccg ctggtccaca cctgaatgat gttattggta
     8461 tacggcgaca gtttgtcgtt gttcgaccag gtctgttccc cttgcgggtt acgttcaggg
     8521 aagttgatat cctgacactt ggtgacgcaa gcctggcagc ctacgcacaa ggtcgagtcg
     8581 tacaacatcc ccagcgatcc cggaattggc gggcggtttt cagcagccgc atgactgaca
     8641 gacggcagcg cgcccgtcag caatgccccg caggaggctg ctttaataaa attacgtctg
     8701 ttcacggtta ttctccccgt gagtcagcgt tatctttctt ttgctgacga cccagttcac
     8761 gcaccgccat cacgctgaca ccggcaacca gcccaaccac accgccgagc aaaccaatag
     8821 cgcctgcaga gacgttaccg ccctctttag cgttaacatc cggtttctgt gaacgcggag
     8881 tctgattttc gacgttggca agctgatgga tgcctttatg gaagccgata ccttcttcgt
     8941 tacagccata gcatgggtga ccaatcgcta ccggccacac gccgccaaca tcgcagaatt
     9001 gcagcgttga gcagttgccg taagtttctg gccctttaca gccgaggtgg tacaggcacc
     9061 agccttcacg gtggccttca tcaccgaact ctttggcaaa acgaccagca tcgaagtgcg
     9121 ggcgacgttc gcagtgttcg tgaatcagac ggccataggc gaaggtcgga cgatttttgt
     9181 catccagttt cggcggtttg ccgtaagtga tgatgtgcgc aacggtcgcg aggaagttgt
     9241 gcgggttcgg cgggcagccc ggaatattga taacggtttt gcctggcaga acttcttgca
     9301 ggctgactgc gccagttggg ttaactccag ctgcggcaac accgccccac gcagagcagg
     9361 aaccgatagc gataatcgct gctgcgcctt ctgccgcttt gcggatgtga tccacaatcg
     9421 gctcaccagc aaccatgcaa taaataccgt tatcttttaa tgggatggaa ccatccacaa
     9481 ccaacacata ctgccctttg tacttctcaa gtgcgttatg tttgttctct tcgacctgat
     9541 gaccgaaggc ggcggaaagc acttcgtgat actccagaga gatagtctcc agcacgaggt
     9601 tttctaccgt tggatgcgtt gcacgaagca gagattccgt acaaccggtg cactcctgcg
     9661 cgccaatcca gataactggc ggacgctgcg ggttagtaac cgattcggcc atctctgcag
     9721 cggctttgct acttaacccc atggtggcgg ctaatgctgc acaaagcttc atgaaatcac
     9781 gacggttaat gccgtgagaa tggatgaggg tgttatctcc agtcatttat agttattccg
     9841 ttgcgaagac ctggcatata ttttgcctca atcgcaaaat caataatgcg atcgatgcgc
     9901 catttaccac acatttatta tggttatcga tatcatgata ctgcggcggg gcgctaaaac
     9961 gaagggaaga agcattagtg taattaatta aagcaagata atacgtatgt ttgatcaatt
    10021 ttcgaggcga taaccggcca taaaaaagcg caacgtagaa caggaattat tctcacgaaa
    10081 gaaatccatt accatctctt tatccagtcc atagcggcgc gtcagaatac ccgcttccca
    10141 ggcgctaagc tggcgatctc cggtcttttc gtacatccgg tgtgagtagc ctaatacaaa
    10201 accgcgttta taatcggcac agaattttgt cacattaacc gcactgtcgg catgcgttgc
    10261 ttttaatccc gccattaagc ctttaccaaa atggttattc atcgttcacc tcattcgcta
    10321 tatattatca tatatagcaa tattttaggc aaagaacgac ttttgcgcac gctatttttt
    10381 catgcttgtt taagacgtaa tcccgtaaga gataaaccca tcaggagaga tatttatcga
    10441 accatttcag cgtcctttgc caggcaagat cggcggcaga tttgtcataa cgaggcgtgg
    10501 aatcattatg gaatccgtga ttaacccccg gatagatata cgcctcatag accttattat
    10561 tggctttcaa cgccgcctca taagcgggcc agccctcgtt gattcgggtg tccagttccg
    10621 cgaagtggag tagtaaaggc gcttcaatct tcgccacatc ggcagtgggt gcctgacgac
    10681 cataaaacgg caccgcgcag gccagttccg gatacgcgac agccgccgcg ttcgatacac
    10741 caccgccata gcaaaatccg gtaataccca cttatgcctg tcgcttgcgg atagcgttgc
    10801 ataaactcaa ttgcggcaaa gaaatcattc atcagtttgg ttggatcaac ctgctgttgc
    10861 agctcacgac ctttatcatc atttcccgga taacctc
//
LOCUS       DAJVSY010000142        10815 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.144, whole genome shotgun sequence.
ACCESSION   DAJVSY010000142 DAJVSY010000000
VERSION     DAJVSY010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10815
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.144"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(88..237)
                     /gene="hokB"
                     /locus_tag="OQQ19_003289"
     CDS             complement(88..237)
                     /gene="hokB"
                     /locus_tag="OQQ19_003289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokB"
                     /protein_id="HCS1804802.1"
                     /translation="MKHNPLVVCLLIICITILTFTLLTRQTLYELRFRDGDKEVAALM
                     ACTSR"
     gene            636..2249
                     /gene="trg"
                     /locus_tag="OQQ19_003290"
                     /pseudo
     CDS             636..2249
                     /gene="trg"
                     /locus_tag="OQQ19_003290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415938.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein Trg"
     gene            complement(2287..3209)
                     /locus_tag="OQQ19_003291"
                     /pseudo
     CDS             complement(2287..3209)
                     /locus_tag="OQQ19_003291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310054.2"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            3426..4769
                     /locus_tag="OQQ19_003292"
     CDS             3426..4769
                     /locus_tag="OQQ19_003292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HCS1804803.1"
                     /translation="MANSITADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVL
                     ENNPQLHEKMVNADELARLNVERHGAIRVGTAQELATLRRMFAIMGMYPVSYYDLSQA
                     GGPVHSTAFRPIDDASLARNPFRVFTSLLRLELIENEILRQKAAEILRQRDIFTPRCR
                     QLLEEYEQQGGFNETQAQEFVQEALETFRWHQSATVDEETYRALHNEYRLIADVVCFP
                     GCHINHLTPRTLDIDRVQSMMPECGIEPKILIEGPPRREVPILLRQTSFKALEETVLF
                     AGQKQGTHTARFGEIEQRGVALTPKGRQLYDDLLRNAGTGQDNLTHQMHLQETFRTFP
                     DSEFLMRQQGLAWFRYRLTPSGEAHRQAIHLGDDPQPLIERGWVVAQPITYEDFLPVS
                     AAGIFQSNLGNETQTRSHGNASREAFEQALGCPVLDEFQLYQEAEERSKRRCGLL"
     gene            4994..6649
                     /gene="opgD"
                     /locus_tag="OQQ19_003293"
                     /gene_synonym="mdoD"
     CDS             4994..6649
                     /gene="opgD"
                     /locus_tag="OQQ19_003293"
                     /gene_synonym="mdoD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucan biosynthesis protein OpgD"
                     /protein_id="HCS1804804.1"
                     /translation="MDRRRFIKGSMAMAAVCGTSGIASLFSQAAFAADSDIADGQTQR
                     FDFSILQSMAHDLAQTAWRGAPRPLPDTLATMTPQAYNSIQYDAEKSLWHNVENRQLD
                     AQFFHMGMGFRRRVRMFSVDPATHLAREIHFRPELFKYNDAGVDTKQLEGQSDLGFAG
                     FRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDSKEEFPDFTAFW
                     FDTVKPGATTFTVYALLDSASITGAYKFTIHCEKSQVIMDVENHLYARKDIKQLGIAP
                     MTSMFSCGTNERRMCDTIHPQIHDSDRLSMWRGNGEWICRPLNNPQKLQFNAYTDNNP
                     KGFGLLQLDRDFSHYQDIMGWYNKRPSLWVEPRNKWGKGTIGLMEIPTTGETLDNIVC
                     FWQPEKAVKAGDEFAFQYRLYWSAQPPVHCPLARVMATRTGMGGFPEGWAPGEHYPEK
                     WARRFAVDFVGGDLKAAAPKGIEPVITLSSGEAKQIEILYIEPIDGYRIQFDWYPTSD
                     STDPVDMRMYLRCQGDAISETWLYQYFPPAPDKRQYVDDRVMS"
     gene            6789..7013
                     /locus_tag="OQQ19_003294"
     CDS             6789..7013
                     /locus_tag="OQQ19_003294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415943.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HCS1804805.1"
                     /translation="MFPEYRDLISRLKNENPRFMSLFDKHNKLDHEIARKEGFDGRGY
                     NAEVVRMKKQKLQLKDEMLKILQQESVKGV"
     gene            7076..7612
                     /gene="rimL"
                     /locus_tag="OQQ19_003295"
     CDS             7076..7612
                     /gene="rimL"
                     /locus_tag="OQQ19_003295"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12-serine
                     acetyltransferase"
                     /protein_id="HCS1804806.1"
                     /translation="MTETIKVSESLELHAVAESHVTPLYQLICKNKTWLQQSLNWPQF
                     VQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVISFNRIEPLNKTAEIGYWLDE
                     SHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPQSNQVALRNGFILEGCLKQAE
                     FLNDAYDDVNLYARIIDS"
     gene            complement(7607..8587)
                     /locus_tag="OQQ19_003296"
                     /pseudo
     CDS             complement(7607..8587)
                     /locus_tag="OQQ19_003296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707644.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            8711..9703
                     /gene="tehA"
                     /locus_tag="OQQ19_003297"
     CDS             8711..9703
                     /gene="tehA"
                     /locus_tag="OQQ19_003297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate transporter/tellurite-resistance
                     protein TehA"
                     /protein_id="HCS1804807.1"
                     /translation="MQSDKVLNLPAGYFGIVLGTIGMGFAWRYASQVWQVSHWLGDGL
                     VILAMIIWGLLTSAFITRLIRFPHSVLAEVRHPVLSSFVSLFPATTMLVAIGFVPWFR
                     PLAVCLFSFGVVVQLAYAAWQTAGLWRGSHPEEATMPGLYLPTVANNFISAMACGALG
                     YTDAGLVFLGAGVFSWLSLEPVILQRLRSSGELPTALRTSLGIQLAPALVACSAWLSV
                     NGGEGDTLAKMLFGYGLLQLLFMLRLMPWYLSQPFNASFWSFSFGVSALATTGLHLGS
                     GSENGFFHTLAVPLFIFTNFIIAILLIRTFALLMQGKLLVRTERAVLMKAEDKE"
     gene            9700..10293
                     /gene="tehB"
                     /locus_tag="OQQ19_003298"
     CDS             9700..10293
                     /gene="tehB"
                     /locus_tag="OQQ19_003298"
                     /EC_number="2.1.1.265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance methyltransferase TehB"
                     /protein_id="HCS1804808.1"
                     /translation="MIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRN
                     SLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILST
                     VVLMFLEAKTIPGLIANMQRCTKLGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYY
                     EGWERVKYNEDVGELHRTDANGNRIKLRFATMLARKK"
     gene            10596..10718
                     /locus_tag="OQQ19_003299"
                     /pseudo
     CDS             10596..10718
                     /locus_tag="OQQ19_003299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310063.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3313 domain-containing protein"
     gene            10756..>10815
                     /locus_tag="OQQ19_003300"
     CDS             10756..>10815
                     /locus_tag="OQQ19_003300"
                     /inference="COORDINATES: protein motif:HMM:NF015750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804809.1"
                     /translation="MASISIRCPSCSATEGVVRN"
BASE COUNT         2759 a         2521 c         2742 g         2793 t
ORIGIN      
        1 aacatgcact aactgaagtg taaaaggggt gccatgagaa aatgaatctg ctagtcagat
       61 gcgcggggaa aatccccgcg cttgccctta cctggacgtg caggccatga gcgcagcaac
      121 ctccttatca ccgtcccgga accgcagttc gtagagcgtt tgtcgggtca ggagtgtgaa
      181 tgtcagaatc gtaatgcaga taatgagcag acacaccacc agagggttgt gcttcatagc
      241 ctttctcctt gccggatggc gggtaagagg ctaagatctg aattgctagg ttcattcgtt
      301 ggcctcggtt gatagaaata tcggtcgggg ccttcgtctt tctgattccc ggttagcctg
      361 aaaacagaaa gtctcaggca cccgcaggca tcctatgagg tttccttagg gacgaaaata
      421 atcacttcac gaaattgcgt gctgttttcc agaatttttc gtcattcgga ttagccagtt
      481 tagccattcg ttactctctt cattccaata gcattaattt tctctgcaat aattgttgta
      541 aaaatgtgac gcaaagaggt ttttggtcat aagtaattac cgtcaagtgc cgatgacttt
      601 ctatcaggag taaacctgga cgagagacaa cggtaatgaa tacaactccc tcacagcgat
      661 taggtttttt gcatcacatc aggctggttc cgttatttgc ctgcattctt ggcggtatct
      721 tagttctatt cgcattaagt tctgctctgg caggccgatc gcgatcagcg tgatgttact
      781 gcggagattg agattcggac cgggttagcg aacagttcag attttttgcg ttcagcccgg
      841 atcaatatga ttcaggccgg ggctgcgagt cgtattgcgg aaatggaagc aatgaagcga
      901 aatattgcgc aagccgaatc ggagattaaa cagtcgcagc aaggttatcg tgcttatcag
      961 aatcgaccgg tgaaaacacc tgctgatgaa gccctcgaca ctgaattaaa tcaacgcttt
     1021 caggcttata tcacgggtat gcaacctatg ttgaaatatg ccaaaaatgg catgtttgaa
     1081 gcgattatca atcatgaaag tgagcagatc cgaccgctgg ataatgctta taccgatatt
     1141 ttgaacaaag ccgttaagat acgtagcacc agagccaacc aactggcgga actggcccat
     1201 cagcgcaccc gcctgggtgg gatgttcatg attggcgcgt ttgtgcgtgc cctggtcatg
     1261 acgctgataa catttatggt gctacgtcgg atcgtcattc gtccactgca acatgccgca
     1321 caacggattg aaaaaatcgc cagtggcgat ctgacgatga atgatgaatc ggcgggtcgt
     1381 aatgaaatcg gtcgcttaag tcgtcattta cagcaaatgc agcattcact ggggatgaca
     1441 gtagggactg ttcgacaggg cgcggaagag atttatcgtg gcaccagcga aatttcagct
     1501 ggcaatgcgg acctgtcatc tcgcaccgaa gaacaagcgg cggctatcga acaaactgcc
     1561 gccagcatgg agcaactcac tgcgacggtg aaacagaatg cggataacgc gcatcatgcc
     1621 agcaaactgg cgcaagaggc ttctattaaa gccagcgatg gcgggcagac ggagtaaaaa
     1681 cgatgggcgc tatctccacg agttcgaaga aaatttctga gatcaccgcc gtcatcaaca
     1741 gtattgcttt ccagacgaat attctggcac tgaatgctgc cgttgaagcc gcgcgagcgg
     1801 gtgagcaagg gcgtggattt gccgttgtcg ccagcgaagt acggacactc gcaagtcgca
     1861 gcgctcaggc ggcgaaagag attgaaggct tgatcagtga atcagtcagg ttaattgacc
     1921 tggggtcgga tgaggtggca acggccggga aaaccatgag cactattgtt gatgccgtcg
     1981 cgagtgtcac acatatcatg caggaaatcg ccgccgcctc ggatgaacaa agtagaggca
     2041 taacgcaggt tagccaggcg atttctgaaa tggataaggt gacgcaacag aatgcttctc
     2101 tggtagaaga ggcctcagcg gcggcggtgt cccttgaaga acaggcggca cgattaactg
     2161 aggcggtgga tgtattccgt ctgaacaaac attctgtgtc ggcagaacct cgcggagcgg
     2221 gtgaaccagt tagtttcgct acggtgtgaa aatgttcaag gagggatcga cagatccctt
     2281 cacctttcag aacggcattg attttcgaat agcgttaatc atcaactggc aaccagaaga
     2341 gaacatcgca tctacgcggg tcagtattcc aatcggttcg cctgcaccat gtcccggaac
     2401 aggctgggcc accagcgtgg catgacgcag gtcgtctttt accgcgccag aagggacaaa
     2461 ccacacgtag tcgtattcaa ccgtaagttg acgagatagc gaagcagaca gcgtttcgat
     2521 acaacccgaa ggaattttac atccctggct ctgtactaat gcatctgaat gctggcgtgg
     2581 cgcagtgcct tctggtgata caacgaccgg ccatttcagc actcggctta gcgttacgtt
     2641 ctcctgaagt agcgggtgat tagggcggac aaccagcttc agcgattcaa gaaacagcag
     2701 ttcgtaatta agcccggtca tcagttcagg atctgacatc cgaccaatgc cgatatcgat
     2761 ttccccggtt ttcaaacccg ccagaatcat agggttactc attgtcgcaa cttgcaaggt
     2821 cgtctctttt tgttgctgat gaaactgacc tataaccgaa ggtaatatcc ccagtgccgc
     2881 agtaggtagt gcaccaatcc tgacgacatc attattaaga ccttctttac gatgaagcga
     2941 ctgtccggca gtgttgatgg cgtcaagaac tctgactgca tgcgttaaaa attgttcgcc
     3001 gggtaaggta agttgcgccc cctgacgacc acgctcaaac aagcgagcgc ccgtcagctg
     3061 ctacagttca ttcaatgtct tagagagcgc aggttgactc aaattaaggg tttcagccgc
     3121 gcccccaaag ttccttgttg tgcgacagct acgaatgtat gaaggtggcg caaacggatg
     3181 cgctgactaa acagactatt tttttccata agcgatgtta aaaacgaagc ggtgtcgctg
     3241 acaagtgaag ttgtttgatt atgataactt gattgcaaaa tataattaac aattaaagca
     3301 attgtgttac agcaaaatgg ataatattga tgttttcgcg gcgagatcac agtttgtaaa
     3361 ttcttcccgc cagagtgaat gcggttacct acactccaga ttactgacca ctggaggcag
     3421 acactatggc gaacagcatc acggcggatg agattcggga acagttttcg caggcaatgt
     3481 cagccatgta ccagcaagaa gttccgcagt acggcacgct gctggaactg gtagctgatg
     3541 tgaatctggc tgtgctggaa aacaatcctc aactgcacga aaaaatggta aatgcagatg
     3601 agctggcgcg actgaatgtt gaacgtcatg gggcgattcg cgttgggact gcacaagagc
     3661 ttgctactct tcggcggatg tttgccatta tggggatgta cccggtgagc tattacgatc
     3721 tctcgcaggc aggggggccg gtacattcga cagcatttcg gcccattgat gatgcttctc
     3781 tggcgcgtaa tcccttccgc gtttttacct ccttactccg ccttgagctt atcgagaacg
     3841 aaattttgcg ccagaaagcg gcggagattc tgcgtcagcg cgatatcttc accccacgtt
     3901 gtcgacaact gttagaggaa tatgagcagc agggcggttt taacgaaaca caggcacagg
     3961 aatttgtgca agaggccctg gaaacgtttc gctggcacca gtcagcaacg gtagatgaag
     4021 aaacctatcg cgccttgcac aacgaatatc ggttgattgc tgatgtggtc tgttttcctg
     4081 gatgccatat caaccacctg acgccacgta cgctggatat tgaccgggtg cagtcgatga
     4141 tgcctgaatg cggaattgaa cccaaaattc tcatcgaggg gccgccgcgc cgcgaggtac
     4201 cgattttact acgccagacc agctttaaag cactggaaga gacggtgttg tttgcggggc
     4261 agaaacaggg cacgcatacc gcgcgctttg gtgaaattga gcagcgtggc gtggcattaa
     4321 cgccgaaagg gcgacaactg tatgatgatc ttctgcgtaa cgctggaacc gggcaggata
     4381 atctcactca ccaaatgcat ttacaggaaa ccttccgcac ttttcctgac agtgagtttt
     4441 taatgcgtca gcaagggttg gcatggttcc ggtaccgtct gacgccttcg ggtgaggcgc
     4501 atcgtcaggc gattcatctt ggagacgatc cacagccttt aattgaacgt ggttgggtag
     4561 tggcgcaacc catcacctat gaagatttct tgcccgttag cgcggcgggg atcttccagt
     4621 caaatctggg taatgaaacg cagacacgca gtcacggtaa tgccagtcgc gaagcatttg
     4681 agcaggcgtt gggttgtccg gttttggatg agttccagct ttaccaggaa gcggaagaac
     4741 gcagtaaacg tcgctgtggt ttgctttaaa ttctgaccat ccgcctttgc aaaaatttgc
     4801 ctgattttac aaacgaatca ggctcatccc atcgacataa aaaaaatgcc gatttatgca
     4861 tattctctca gttcaacaat tggattatta ataaatattg tctagagtga gcggtcataa
     4921 ataagcactt tcttgccgct gaaaacgacc agcgcgggac cattcacaac accagaagga
     4981 ctcactttca ggtatggatc gtagacgatt tattaaaggt tcaatggcta tggccgccgt
     5041 gtgcggtacc agcggcattg cttctctttt ttctcaggcg gcattcgcgg cagattctga
     5101 tattgccgac gggcaaaccc agcgttttga cttctccatt ctacagtcaa tggcgcacga
     5161 cttagcgcaa acagcgtggc gtggtgcgcc tcgtccgtta cctgacacgc tggcgacaat
     5221 gacgccgcag gcttataaca gtattcaata cgacgccgaa aaatcgctct ggcataacgt
     5281 tgagaaccgt caactggacg ctcagttctt ccatatggga atgggattcc gtcgccgcgt
     5341 tcgtatgttt tctgtagatc cagcaacaca tctggcgcgt gaaattcact ttcgcccgga
     5401 gttgttcaaa tacaacgatg cgggtgttga tacaaaacaa ttagaagggc aaagcgatct
     5461 cggctttgcc ggttttcgcg tgtttaaagc ccccgaactg gcgcgccgtg atgtagtatc
     5521 atttctcggc gcgagttatt tccgcgccgt tgatgataca tatcaatacg gtttgtcggc
     5581 ccgcggcctg gcgatcgaca cttacaccga cagtaaagaa gagttccccg actttaccgc
     5641 cttctggttt gatacggtaa aaccgggggc aactaccttt accgtttatg cgttgctcga
     5701 tagcgccagc attactggtg cctataagtt cactatccat tgtgagaaaa gtcaggtgat
     5761 tatggatgtg gaaaatcacc tgtatgcgcg caaagacatt aaacagctgg gcattgcgcc
     5821 gatgaccagt atgttcagct gcggtactaa tgaacgtcgg atgtgcgata caattcatcc
     5881 gcaaattcat gactctgatc gtctgtccat gtggcggggc aacggcgagt ggatttgccg
     5941 tccgctgaat aatccgcaaa aattgcagtt caatgcttac accgacaaca acccgaaagg
     6001 gtttggttta ttgcaactgg atcgtgactt ctcccattat caggacatta tgggctggta
     6061 taacaaacgc ccaagtctgt gggtggaacc gcgtaacaag tggggtaagg gcaccatcgg
     6121 cctgatggaa atcccaacaa cgggcgaaac gctggataac attgtctgtt tctggcagcc
     6181 agaaaaagct gtaaaagcag gtgatgagtt tgcattccag tatcgtctgt actggagtgc
     6241 gcaaccgcct gttcattgcc cattagcgcg cgttatggcg acgcgtaccg gcatgggcgg
     6301 tttcccggaa ggttgggcgc caggtgaaca ctatcccgaa aaatgggcgc gtcgttttgc
     6361 cgtcgatttc gttggtggtg atctgaaagc tgccgcgcca aaaggcattg agccggtgat
     6421 tacgctttcc agtggggaag cgaagcaaat cgaaattctc tatattgaac ccatcgatgg
     6481 ttatcgtatt cagtttgact ggtatccgac ttcggactcc actgatccgg tcgatatgcg
     6541 gatgtatcta cgttgtcagg gggacgctat cagtgaaaca tggctgtatc agtatttccc
     6601 gccagcgccg gataaacgtc agtatgttga cgaccgcgtg atgagttaat cgttttttct
     6661 tcggcacctt cttcgggagg tgccgtctgg ttaaacacga tcccgctcgc atttttccct
     6721 aagttaaatg agtaatctga tggtgtgtat ttcagataca ccttgtcagc cactaacagg
     6781 gagtgcgtat gtttccagaa taccgagatt taatatcccg tctgaaaaac gaaaatcctc
     6841 gctttatgtc cttgttcgat aaacacaata aacttgatca tgaaattgcc agaaaggaag
     6901 gtttcgacgg tcgagggtac aatgcggaag tggtccgcat gaaaaaacaa aagctacagt
     6961 taaaagatga gatgctcaaa atcctgcagc aggagagcgt caaaggggtg taaactttcc
     7021 taagccgcca gccaggcggc ttttttaaca acagcatgga ttgactggag ataagatgac
     7081 tgaaacgata aaagtaagcg aatcacttga attacatgct gttgcggaaa gtcacgtcac
     7141 acctctttat cagttaatct gtaaaaataa aacctggtta cagcagtcgc taaactggcc
     7201 gcagttcgtt cagagtgaag aggacacgcg aaaaacggtg cagggtaatg tgatgttgca
     7261 tcaacgcggc tatgccaaaa tgttcatgat tttcaaagaa gatgaactta tcggcgttat
     7321 ctcgtttaat cgtattgaac cactgaataa aactgctgaa atcggctact ggctggacga
     7381 atctcatcag gggcagggga tcatttctca ggcgctgcag gcattgattc atcattacgc
     7441 tcagtctggt gaacttagac gcttcgtgat caaatgtcgg gtggacaatc cgcaaagcaa
     7501 ccaggtcgct ttgcgcaatg gttttatcct tgaaggttgc ctgaaacagg ctgagttcct
     7561 gaatgatgcc tatgatgatg tgaacttata cgcgcgtatt atcgattcat aataaccctg
     7621 ccagcggcgt tcgcgtaatg cgctcctcgc cgttaatgac ttttggacca cggacatgaa
     7681 ccgtgtcgcc atcaaaggct tcaacgacgg cgtggtcggt taactccaca tggttttcaa
     7741 ttatcaccgc acctgaaata cggctctcac cttgtattac aacgtgctcg tcgagcagaa
     7801 tcggttcacc acgtaccacg gcatttccgc caatcaagac atgatgtttt aacacacaat
     7861 taccttccac aatggcatat tccgccacct gcgaactgta atgaatcgtc ggaatggcat
     7921 cttcttctat gccagctttc acctgcgcgt gaccgtagac tttagcgcaa tcgcatagcc
     7981 agacgttgtt ctcttcatta ccttcaacac tggcaaaatc aaaaacttcg gcgcgatgtt
     8041 caataaaagc ataccggacg acggcatcgc cataaatttg tgcctggtgg acaatacgcg
     8101 aggcgctaac ccttgcgcga tcataaattt ggagcaggag ttgatggtcg ggcgttaagc
     8161 cttgtgcggc gacgatcata gaatgttgat caattaaggc gtgaccaaat attctacatt
     8221 gcccgtaaac taatgagtca tgaatggtga cactgtcact tatatatgca ccctgactga
     8281 tttcactatt atcgatccag acgttatccg ttgcgtaaac ctctccccac agcacgctgg
     8341 tgccggtgat acgcgtatta ccagaaatca ccgttccgcc gaacgcaata gcattctggt
     8401 cgtaaatcca gcaatttcct tcctatgcta acaccgtttc gcgatcgatc cagccgccag
     8461 cggttcctgc tatcacatcg ttaaaatcgc taatggcgat aatctgccgt aataacacac
     8521 tttttttagt gccatcttcc tgataactaa aggctcgctg ttcttcactt agacgatatt
     8581 tgcgcatagc gttttctcac aggtgactta ctatgaccgt agcaaattct gcggctctgg
     8641 ctatgctcga gaaaattcca taaaatgcat ttcaaatata ctttataaat taaacaaaat
     8701 gagtaagaag atgcagagcg ataaagtgct caatttgccg gcaggctact ttggtattgt
     8761 gttggggacg atagggatgg gatttgcctg gcgctatgcc agccaggttt ggcaggtcag
     8821 ccactggtta ggggatgggc tggtgattct ggcgatgatc atctggggat tattaactag
     8881 cgcatttatt acccgactca tacgctttcc gcatagcgtg ctggcggaag ttcgccatcc
     8941 agtgctgagc agttttgtga gtttgtttcc ggcaacgacg atgctggtgg cgattggttt
     9001 tgttccgtgg tttcgcccac tggcggtgtg cctgttcagt tttggtgtcg tggttcagtt
     9061 ggcttatgcc gcctggcaaa ctgcgggatt atggcgcgga tctcaccctg aagaagctac
     9121 catgcctgga ctgtatctgc cgacagttgc caacaacttt atcagcgcaa tggcctgtgg
     9181 tgcgttgggc tacaccgacg ccggtctggt gtttttaggc gcaggcgttt tctcatggct
     9241 aagccttgaa ccggtgatat tgcagcgtct gcgcagttcg ggagaattac ccacggcact
     9301 gcggacatca ctcggcattc agctcgctcc tgcgctggtg gcctgtagtg cctggttgag
     9361 cgtcaacggc ggcgagggtg atacgctggc gaaaatgctt tttggttatg gactgctgca
     9421 actgctgttt atgctacgtc tgatgccatg gtatctctcc cagccattta atgcttcatt
     9481 ctggagtttc tcgttcggcg tatctgcact ggcaaccacc ggtttgcatc tggggagtgg
     9541 cagcgaaaat ggatttttcc atacgctggc ggtaccgctg tttatcttta ccaattttat
     9601 tattgcaata ctgctcatcc gtacttttgc gcttctgatg cagggaaaat tgttagtcag
     9661 aaccgagcgc gctgttttaa tgaaagcaga ggacaaagaa tgatcattcg tgacgaaaac
     9721 tattttactg ataaatatga attaacccgc acacactctg aagtactgga agcggtgaaa
     9781 gtggttaaac cgggtaaaac gctggatctg ggctgtggca atggtcgtaa cagtctttac
     9841 ctggcagcca atggttatga tgttgacgca tgggataaaa atgccatgag tatcgccaat
     9901 gtagagcgca ttaaatccat tgaaaatctg gataatttac acacccgagt cgttgatctg
     9961 aataacctca catttgatag acagtacgat tttattcttt cgactgtggt actgatgttc
    10021 cttgaggcta aaaccatccc agggctgatt gccaatatgc aacgttgcac taaacttggt
    10081 ggttacaacc tgattgtggc ggcgatggat accgctgatt atccatgtac cgtcggcttc
    10141 ccgtttgcct tcaaagaggg agaattacgt cgatattacg aaggctggga gagggtgaaa
    10201 tacaatgaag acgtcggcga gctgcaccgc accgacgcca acggtaatcg tattaaactg
    10261 cgtttcgcca cgatgctggc acgtaaaaaa tgacccgcta agaataaggc gcgtgaaaat
    10321 tccccacgct gagatgattt actgttcttc ttttcggtaa gcatattttt tatcgaaggg
    10381 atgtgaaatt aatcacagta gtcgaagttt tttagcagct taacttactg aaatttaact
    10441 actgatgatt gacttagccc ctttttcggc attgactatg tcgtctgaaa aggggctgaa
    10501 aaatttattt tcaccaacac tttttttgcc acaacacgaa gcggcgcttt ttgctataac
    10561 ttaaaaagta atataatcat ctcaggaaac tattcatgcg taccacatca tttgcgaaag
    10621 ttgcagcttt atgcggcttg ttggctctgt ctggttgtgc ctctaaaatc acccagccag
    10681 ataaatattc tggtttttta ggtaatgctg ccaacttact gatttagtgt atgatggtga
    10741 ttttaaggtg cttgcgtggc ttccatttcc atcagatgtc cttcctgctc cgctactgaa
    10801 ggcgtggtgc gtaac
//
LOCUS       DAJVSY010000143        10663 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.145, whole genome shotgun sequence.
ACCESSION   DAJVSY010000143 DAJVSY010000000
VERSION     DAJVSY010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10663
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.145"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            311..1609
                     /gene="kgtP"
                     /locus_tag="OQQ19_003301"
     CDS             311..1609
                     /gene="kgtP"
                     /locus_tag="OQQ19_003301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate permease"
                     /protein_id="HCS1804810.1"
                     /translation="MAESTVTADSKLTSSDTRRRIWAIVGASSGNLVEWFDFYVYSFC
                     SLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLLSVCM
                     MCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF
                     YASFQYVTLIGGQLLALLVVVVLQHTMEDAALREWGWRIPFALGAVLAVVALWLRRQL
                     DETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGM
                     HANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAAIFTVPILSALQNVS
                     SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANAIFGGSAEYV
                     ALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKGMRL"
     gene            complement(1606..1929)
                     /locus_tag="OQQ19_003302"
     CDS             complement(1606..1929)
                     /locus_tag="OQQ19_003302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417081.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfiM family lipoprotein"
                     /protein_id="HCS1804811.1"
                     /translation="MRILFVCSLLLLSGCSHMANDSWSGQDKAQHFIASAMLSAAGNE
                     YSQHQGMSRDRSAMFGLMFSVSLGASKELWDSRPEGSGWSWKDLAWDVAGASTGYTVW
                     QLTRH"
     gene            complement(1975..3330)
                     /gene="pssA"
                     /locus_tag="OQQ19_003303"
     CDS             complement(1975..3330)
                     /gene="pssA"
                     /locus_tag="OQQ19_003303"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HCS1804812.1"
                     /translation="MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYAPADFRETLLEKI
                     ASAKQRICIVALYLEQDDGGKGILNALYKAKRQRPELDVRVLVDWHRAQRGRIGAAAS
                     NTNADWYCRMAQENSGVDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYL
                     HQHDKYRYDRYHLIRNRKMSDIMFEWVTQNIMNGRGVNRLDDVNRPKSPEIKNDIRLF
                     RQELRDAAYHFQGDADNDQLSVTPLVGLGKSSLLNKTIFHLMPCAEQKLTICTPYFNL
                     PAILVRNIIQLLREGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRLFLSR
                     LQYYVNTDQLVVRLWKDDDNTYHLKGMWVDDKWMLITGNNLNPRAWRLDLENAILIHD
                     PQLELAPQREKELELIREHTTIVKHYRDLQSIADYPVKVRKLIRRLRRIRIDRLISRI
                     L"
     gene            complement(3444..6104)
                     /gene="pat"
                     /locus_tag="OQQ19_003304"
     CDS             complement(3444..6104)
                     /gene="pat"
                     /locus_tag="OQQ19_003304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein lysine acetyltransferase"
                     /protein_id="HCS1804813.1"
                     /translation="MSQRGLEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPV
                     LPVTPAWKAVLGVLAWPDIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSA
                     PASQHEDLRACALRHNMRLLGPNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVS
                     NTILDWAQQRKMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFV
                     SAARSASRNKPILVIKSGRSPAAQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSA
                     VETLSHMRPLRGDRLMIISNGAAPAALALDALWSRNGKLATLSEETCQKLRDALPEHV
                     AISNPLDLRDDASSEHYIKTLDILLHSQDFDALMVIHSPSAAAPATESAQVLIEAVKH
                     HPRSKYVSLLTNWCGEHSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQLR
                     ETPALPSNLTSNTAEAHLLLQQAIAEGATSLDTHEVQPILQAYGMNTLPTWIASDSTE
                     AVHIAEQIGYPVALKLRSPDIPHKSEVQGVMLYLRTANEVQQAANAIFDRVKMAWPQA
                     RIHGLLVQSMANRAGAQELRVVVGHDPVFGPLIMLGEGGVEWRPEDQAVVALPPLNMN
                     LARYLVIQGIKSKKIRARSALRPLDVAGLSQLLVQVSNLIVDCPEIQRLDIHPLLASG
                     SEFTALDVTLDISPFEGDNESRLAVRPYPHQLEEWVELKNGERCLFRPILPEDEPQLQ
                     QFISRVTKEDLYYRYFSEINEFTHEDLANMTQIDYDREMAFVAVRRIDQTEEILGVTR
                     AISDPDNIDAEFAVLVRSDLKGLGLGRRLMEKLITYTRDHGLQRLNGITMPNNRGMVA
                     LARKLGFNVDIQLEEGIVGLTLNLAQREES"
     gene            complement(6136..6834)
                     /gene="tapT"
                     /locus_tag="OQQ19_003305"
                     /gene_synonym="tuaA"
                     /gene_synonym="yfiP"
     CDS             complement(6136..6834)
                     /gene="tapT"
                     /locus_tag="OQQ19_003305"
                     /gene_synonym="tuaA"
                     /gene_synonym="yfiP"
                     /EC_number="2.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311476.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-uridine aminocarboxypropyltransferase"
                     /protein_id="HCS1804814.1"
                     /translation="MTENTVLQLRAERIARATRPFLARGNRVRRCQRCLLPEKLCLCS
                     TITPAQAKSRFCLLMFDTEPMKPSNTGRLIADILPDTVAFQWSRTEPSQDLLDLVQNP
                     DYQPMVVFPASYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVIS
                     VDLSRLSAYRLREALAEGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKT
                     QHLGSITAEQLESV"
     gene            complement(6903..7322)
                     /gene="trxC"
                     /locus_tag="OQQ19_003306"
     CDS             complement(6903..7322)
                     /gene="trxC"
                     /locus_tag="OQQ19_003306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxC"
                     /protein_id="HCS1804815.1"
                     /translation="MNTVCTHCQSINRIPDDRIEDAAKCGRCGHDLFDGEVINATGET
                     LDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRF
                     GIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL"
     gene            7529..8566
                     /locus_tag="OQQ19_003307"
     CDS             7529..8566
                     /locus_tag="OQQ19_003307"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA/rRNA methyltransferase"
                     /protein_id="HCS1804816.1"
                     /translation="MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRA
                     DGGRRPARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRR
                     QRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA
                     ELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSC
                     AHFGVKGVVVQDAALLESGAAIRTAEGGAELVQSITGDNIVNVLDDFRQAGYTVVTTS
                     SEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGV
                     LLGEWWRQNKA"
     gene            complement(8614..9303)
                     /gene="ung"
                     /locus_tag="OQQ19_003308"
     CDS             complement(8614..9303)
                     /gene="ung"
                     /locus_tag="OQQ19_003308"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HCS1804817.1"
                     /translation="MANELTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDV
                     FNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPG
                     FTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVV
                     FLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQRGETPI
                     DWMPVLPAESE"
     gene            9608..9991
                     /gene="grcA"
                     /locus_tag="OQQ19_003309"
     CDS             9608..9991
                     /gene="grcA"
                     /locus_tag="OQQ19_003309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007728348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autonomous glycyl radical cofactor GrcA"
                     /protein_id="HCS1804818.1"
                     /translation="MITGIQITKAANDDLLNSFWLLDSEKGEARCIVAKAGYAEDEVV
                     AVSKLGDIEYREVPVEVKPEVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIRVSG
                     YAVRFNSLTPEQQRDVIARTFTESL"
     gene            complement(10047..10634)
                     /gene="eamB"
                     /locus_tag="OQQ19_003310"
     CDS             complement(10047..10634)
                     /gene="eamB"
                     /locus_tag="OQQ19_003310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/O-acetylserine transporter"
                     /protein_id="HCS1804819.1"
                     /translation="MTPTLLSAFWTYTLITAMTPRPNNILALSSATSHGFRQSTRVLA
                     GMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSPTKEDGLQA
                     KPISFWASFALQFVNVKIILYGVTALSTFVLPQTQALSWVVGVSVLLAMIGTFGNVCW
                     ALAGHLFQRLFRQYGRQLNIVLALLLVYCAVRIFY"
BASE COUNT         2654 a         2704 c         2740 g         2565 t
ORIGIN      
        1 aaaggccatc cgtcaggatg gcctttttgc attggcgcag aaaaaatgac tgatgcgacg
       61 ctgcgcgtct tatactccca catatgccag attcagcaac ggatgcggtt tccccaactt
      121 gcctacttcc atacgtgtcc tccttaccag aatttatcct taagctcctc aataaccatt
      181 ttcctgctaa ctaaattcat ggttaatgtt gcataataat acgtaacaaa tgtataacat
      241 tttctttacc aaaagaaata aacaaaagtg accaacaaaa gcatcggatt acggcaggag
      301 acataatggc atggctgaaa gtactgtaac ggcagacagc aaactgacaa gtagtgatac
      361 tcgtcgccgc atttgggcga ttgtgggggc ctcttcaggt aatctggtcg agtggttcga
      421 tttctatgtc tactcgttct gttcactcta cttcgcccac attttcttcc cttccgggaa
      481 cacgacgact caactactac aaacagcagg tgtttttgct gcgggattcc tgatgcgccc
      541 aataggcggt tggctatttg gccgcatagc cgataaacat ggtcgcaaaa aatcgatgct
      601 gttatcggtg tgtatgatgt gtttcggatc gctggttatc gcctgcctcc caggttatga
      661 aactataggt acgtgggctc cggcattatt gcttctcgcg cgtttatttc agggattatc
      721 cgttggcgga gaatatggca ccagcgccac ctatatgagt gaagttgccg ttgaagggcg
      781 caaaggtttt tacgcatcat ttcagtatgt gacgttgatc ggcggacaac tgctagccct
      841 actggttgtc gtggttttac aacacaccat ggaagacgct gcactcagag agtggggatg
      901 gcgtattcct ttcgcgttag gagctgtgtt agctgttgtg gcgttgtggt tacgtcgtca
      961 attagatgaa acttcgcaac aagaaacgcg cgctttaaaa gaagctggat ctctgaaagg
     1021 attatggcgc aatcgccgtg cattcatcat ggttctcggt tttaccgctg cgggctccct
     1081 ttgtttctat accttcacca cttatatgca gaagtatctg gtaaatactg cgggaatgca
     1141 tgccaacgtg gcgagtggca ttatgactgc cgcattgttt gtattcatgc ttattcaacc
     1201 actcattggc gcgctgtcgg ataagattgg tcgccgtacc tcaatgttat gtttcggttc
     1261 gctggcagcc atttttaccg ttcctattct ctcagcattg caaaacgttt cctcgcctta
     1321 tgccgctttt ggtctggtga tgtgtgccct gctgatagtg agtttttata catcaatcag
     1381 tggaatactg aaggctgaga tgttcccggc acaggttcgc gcattaggcg ttggtctgtc
     1441 atatgcggtc gctaatgcta tatttggtgg ttcggcggag tacgtagcgt tgtcgctgaa
     1501 atcaatagga atggaaacag ccttcttctg gtatgtgacc ttgatggccg tggtggcgtt
     1561 tctggtttct ttgatgctac atcgcaaagg gaaggggatg cgtctttagt gacgggtcag
     1621 ttgccagacg gtatagccgg tgcttgcacc ggcgacatcc caggccaaat ccttccagct
     1681 ccagccgctc ccttcggggc ggctatccca aagctctttt gacgccccca aactgacaga
     1741 gaacatcaat ccaaacatgg cactgcgatc ccggctcatc ccctgatgct gtgaatattc
     1801 atttccggcg gcggaaagca tcgccgaggc gataaagtgt tgagctttat cctgcccgct
     1861 ccagctatcg ttagccatat ggctgcatcc agaaagtaac aatagcgaac agacaaaaag
     1921 aatacgcaaa acgtggcctc caaaaaacaa accccgtaca ggacggggtt gtgattacag
     1981 gatgcggcta attaatcggt cgatgcggat acggcgcaaa cggcggatga gtttacgaac
     2041 cttcaccgga taatcggcaa tactttgcag atcgcgatag tgcttaacga tggtggtatg
     2101 ctcgcggatc agctccagtt ctttctctcg ctgcggcgca agctccagtt gtggatcgtg
     2161 gatcaaaatg gcgttttcca gatccagacg ccaggcgcgc gggttcaggt tattaccggt
     2221 gatcaacatc cacttatcat caacccacat ccctttcagg tgataggtgt tgtcgtcatc
     2281 tttccataac cgaaccacta gctggtcagt attgacgtaa tactgcaaac ggctcaggaa
     2341 aagacgcaga ttgatctcat agagataagg caatgcgcca attatcttga aaggttcatc
     2401 ttccggaatg tagaagtcgt tcgcggtttt atcaccaaca ataatttcga cctttttccc
     2461 ttcgcgcagc aactggataa tattgcgcac aaggattgct ggcaggttga agtatggcgt
     2521 acagatggtt agtttctgct cggcacaagg cataagatgg aaaatggtct tgttcaacag
     2581 actcgatttc cccagcccca ctagcggcgt tacggaaagc tgatcgttgt cggcatcgcc
     2641 ctggaaatga taagcggcat cacgcagctc ctggcggaac agacgaatat cgttcttgat
     2701 ttccgggctt tttggccgat taacatcatc cagacgatta acgccgcggc cattcataat
     2761 attctgtgta acccattcaa acataatgtc tgacatctta cggttacgga taagatgata
     2821 acggtcgtag cgatatttat cgtgctgatg caggtaaaca tcgttcaggc tggcaccgct
     2881 ataaagtacg ctatcgtcga tgataaagcc tttaaagtgc agaacaccaa gggcttcacg
     2941 ggtattgatt ggaacgccat aaaccggaac atctacgccc gaattttcct gcgccatgcg
     3001 gcagtaccag tcagcgttag tgttagatgc cgcagcgcca atgcgtccac gttgtgcacg
     3061 atgccagtcg accagcaccc gcacatccag ttccggacgc tgccttttag ctttatacaa
     3121 cgcgttcaga atgcctttgc caccgtcatc ctgttcgaga tacagggcga caatgcaaat
     3181 gcgctgcttc gcgctggcta ttttttccag cagcgtctcc cggaagtcgg cgggagcgta
     3241 aaagaaatcg acatcatcaa ctgattgaga aatcttgggt agttgggcaa ggtgttgttg
     3301 atgtttatta cgcttaaatt ttgacaacat cacagtgcat ttcttctctg ttcattgaag
     3361 gatcctctgt gcaatgcaga cgacataagc gggcaataat aacaccagtc ccgattaagt
     3421 agtcaacatt tccagtacct tactcatgat tcctcgcgtt gggcaagatt tagcgtaagc
     3481 ccaacgatcc cctcttcgag ctggatatca acgttaaacc cgagcttgcg ggctagcgcc
     3541 accatgccac gattgtttgg catcgtaata ccattcagac gttgtagtcc gtgatctcgc
     3601 gtataggtaa tcaacttttc cattaagcgt cgacctaagc ctaacccttt gagatccgag
     3661 cgaaccagca cagcaaattc ggcatcgatg ttatcaggat cggaaatcgc acgcgtgacg
     3721 ccgaggatct cttccgtttg atcaatacgt cgtaccgcta caaacgccat ttcccgatcg
     3781 tagtcgatct gtgtcatgtt ggctaaatct tcatgggtaa attcgttgat ctcgctaaag
     3841 tagcggtaat aaagatcttc tttggtgact cgcgaaatga attgctgaag ttgtggctca
     3901 tcttctggca aaatcgggcg gaacaagcag cgttcaccgt ttttcaattc tacccattct
     3961 tccagctgat gcggataagg gcgcactgcc agccgactct cgttatcgcc ttcaaacggc
     4021 gagatatcca gcgtgacatc cagcgcggta aattcactgc cagaagccag caaaggatga
     4081 atatccagac gctgaatttc cgggcaatcg acaatcaagt tggaaacctg caccagaagc
     4141 tggctcaagc ctgcaacatc caatgggcgt agcgcactgc gcgcacgaat ctttttactt
     4201 ttgatcccct gaataaccag atagcgggcc aggttcatgt tcagcggcgg cagtgcgacg
     4261 acggcttgat cttcaggacg ccactccaca ccgccttcac ccagcatgat caacggcccg
     4321 aaaaccggat cgtgcccaac cacaacccgc aactcctgag cgccagcacg gttagccata
     4381 ctttgcacca acaggccgtg gatccgcgcc tgcggccagg ccatttttac gcgatcgaaa
     4441 atggcgtttg ccgcttgctg gacttcattg gctgtacgca agtacagcat gacgccctga
     4501 acttccgatt tatgtggaat atccggcgaa cgcaatttca gcgccaccgg ataaccaatc
     4561 tgttcggcaa tatgcaccgc ttcggtgcta tcgctggcaa tccaggtagg gagcgtgttc
     4621 atgccatacg cttgcaggat gggctgaact tcatgggtat cgagcgacgt agccccttcg
     4681 gcaatcgcct gttgcaacag aagatgcgct tctgcggtat tggaagtcag attgctgggc
     4741 aacgccggcg tttcgcgtag ttgcttctga ttacgccggt actccaccat atgcataaaa
     4801 gcagtgatgg ttccttccgg ggtacggtag gtcggcagcc cggcttcgct gaataaacgt
     4861 cgtgcctctt gcgaggagtg ctcgccgcac cagttcgtca gcaaagagac atatttgctg
     4921 cggggatgat gctttaccgc ttcaattaat acttgcgcgc tttctgttgc gggagcagcg
     4981 gcgctgggcg aatgaataac catcagcgcg tcaaaatcct ggctgtggag cagaatatcc
     5041 agcgttttaa tatagtgctc actgctggcg tcatcgcgta gatcgagcgg gttagatatt
     5101 gccacatgtt ctggcagtgc atcgcgcagt ttctggcagg tttcttcgct tagcgttgcc
     5161 agcttgccat tgcgtgacca taaggcatcc agcgccagcg cggcaggcgc agcaccgttg
     5221 ctgataatca tcagccggtc gccacgtagc gggcgcatat ggctaagggt ttccaccgcc
     5281 gaaaacagct cgtgggtgtc ctgtacccgc aacaaaccgg cacgctgaat agccgcatcc
     5341 catgccgggt ccattcctgc cgtggtgttg agcagtcgct gtgccgccgg gctacgtccg
     5401 cttttaatca ccagaatcgg tttattacgc gaggcactac gggccgccga aacaaagcgt
     5461 cgcgcgtcgc ttaactgttc gagatagagc aggatggcgc tggttttact gtcgcgtgcc
     5521 agatagtcaa gcaattcatc aacgtcgata tccaggctgt cgccgagcgc aataaagtag
     5581 gaaaagccca tcttacgctg ttgcgcccag tcgaggatgg tgttggagac ggcagccgat
     5641 tgcgaaataa acgccagctt gccgcgttta atcggcacag gcgaaaagct ggcattcaga
     5701 ccttgccagg gagccagtaa acccagactg tttggtccaa gcaggcgcat gttatggcgc
     5761 agggcgcagg cgcggagatc ttcgtgttgc gatgccgggg cggaaagaat aatgcaggtt
     5821 ttacagcctt tctcgccgag ctcttccaga agagcaagat tacggctggc attggtacat
     5881 aaaaccgcaa ggtcgggtgt aaagggcaag ctggcaatat ccggccaggc caacacaccc
     5941 aacaccgctt tccaggctgg cgtcaccggg agtaccggtc cgttaaagcc tcccgccagc
     6001 aggttacgca tcatcaggta acctgcgcga ttgggtttca tcgacgcgcc aattaccgct
     6061 atcgattttg gtcgcagtag tgcttccagt cctcgctgac tcataccggt ctcccgcaga
     6121 agtgaccgaa tgattttaaa cgctttctaa ctgttctgct gtgatgctac ccagatgttg
     6181 cgttttccct gccagatagc gtgttttaaa gcgggtaaaa tgctcgccta accctgctgc
     6241 cgccccggta tcgccggcca tatctaacag tgcgatggct acctcggcag tacaatattg
     6301 gccttcagcc agggcttcac gcaggcgata ggcagaaagc cgggaaagat cgacggaaat
     6361 gacgggaaga ttatccagat acggactttt acgaaacatc ttgcgagctt ccggccaggt
     6421 accatcgagc atgataaaca gcggtggctt accggcaggt ggtgtgaaga tcacttcccg
     6481 ttgctcatca gcatacgagg cgggaaagac caccattggc tgataatccg ggttttgtac
     6541 cagatccagc aaatcctgcg agggttcggt acgcgaccat tgaaacgcaa cggtatcagg
     6601 caaaatatca gcaatcagac gcccggtatt actgggcttc attggctcgg tgtcgaacat
     6661 cagcaaacag aagcgacttt ttgcttgtgc tggggtaatt gtcgaacaga gacataattt
     6721 ctctggcaaa agacagcgtt ggcagcgacg aacgcgatta ccgcgggcaa gaaaaggacg
     6781 tgttgcgcgc gcaatacgct cggcgcgtaa ctggagaaca gtgttttcgg tcataagaga
     6841 gcgtcgaaaa aacgccattg tcgcagagga gaaaacgggg cacaagatgc gccccggtaa
     6901 gattaaagag attcgttcag ccagctatcg aacggagctt tcggtactgc gccattaagc
     6961 atgtcgacaa cctgaccgtt tttgaaaatc atgatcgtcg gtatactacg aattccaaag
     7021 cgactgctca attcacgttc agcttcggta ttcactttca caaagcgcac tttaccgcta
     7081 cgctcttgcg cgacatcttc aaaaattggt gcgaaattac ggcaggggcc gcaccacggt
     7141 gcccagaagt cgatcaccac aggtagatca tccttcagca atttgtcgag tgtttcaccg
     7201 gtcgcattaa tcacctctcc gtcaaacaag tcgtgaccgc agcgtccgca ttttgccgca
     7261 tcttcgatcc gatcgtcggg aatgcgattg atggactgac aatgggtaca aacggtattc
     7321 ataactaacc tcgggatgag taaggagact tatcggcaac gacgccggta tgtttctaat
     7381 atgttacata ttatcgggga cattgttcca gacaacaatc tgttttattc aataggtatg
     7441 atagtcgcag gctttggtac gaaatcatgg agaaccgcgc ggacttcggg taatctgcgc
     7501 gcttcgcgca gcgctggtgg agaaaagcat gaacgatgaa atgaaaggta aaagcggcaa
     7561 ggtcaaagtg atgtatgtcc gcagtgatga tgattctgat aaacgtaccc acaacccgcg
     7621 taccgggaaa gggggcgggc gtccaggaaa atctcgtgct gacggtggcc gtcgccccgc
     7681 ccgcgatgac aaacagagtc agccccgtga ccgcaagtgg gaagattcgc cgtggcgcac
     7741 ggtttcccgc gcgccgggtg atgagacgcc ggaaaaggcc gatcacggtg gcatcagtgg
     7801 taaaagtttt attgatccgg aagtgttgcg tcgtcagcgt gcggaagaaa cccgcgtcta
     7861 cggcgaaaac gcctgtcagg cactgttcca gagccgtccg gaagcaattg ttcgcgcctg
     7921 gtttatccag agcgtaacgc cacgttttaa agaagccttg cgctggatgg cggcaaaccg
     7981 caaagcgtac catgtggtgg atgaagctga attgacaaaa gcgtcaggca cggaacatca
     8041 cggcggcgtt tgcttcctga tcaaaaagcg taacggtaca accgtgcagc agtgggtaag
     8101 ccaggcaggc gcgcaggatt gcgttctggc actggaaaac gaatctaacc cgcataacct
     8161 gggtggcatg atgcgcagct gcgcgcactt cggcgtgaaa ggtgtcgtgg tgcaggatgc
     8221 ggcactgctg gagtcggggg cggctatccg taccgcagaa ggcggcgcag agctcgttca
     8281 gtcgattact ggcgacaaca ttgttaacgt gctggatgat ttccgtcagg caggttacac
     8341 cgtagtgacc acttccagcg agcagggtaa accgctgttc aaaactagtc tgccagcgaa
     8401 aatggtactg gtgctgggtc aggaatatga agggttaccg gatgccgcac gcgatccgaa
     8461 cgatctgcgc gtgaagattg acggtacggg caacgttgcc gggctgaata tctctgtcgc
     8521 aaccggcgtt ttgcttggtg aatggtggcg tcagaataaa gcctgataaa tcagccgggt
     8581 ggcaactctg ccatccggca tttccccgca aatttactca ctctctgccg gtaatactgg
     8641 catccagtca atcggcgtct cgccacgttg ttccagccac tgatttgcca gcacaaaatg
     8701 gttgcagcca aagaatccac gatgcgccga aagcggcgac ggatgcggtg ctttcagtac
     8761 atgatggcgt tgcttatcta taatcgcccc tttcttttgc gcatgtgatc cccacaacaa
     8821 aaacaccacg ccttcgcggt gctggttaat caggctgatg actttatcag taaacgtctc
     8881 ccaaccgagg ctggcgtggg aatgcgcctg acctgcgcga accgtcaaca cagtattgag
     8941 cagcagaacg ccctgacgcg cccagctttc gagatagcca tgattagggc gggtgaagcc
     9001 cggaatagta ttttccagct ctttatacat attcaataat gacggaggaa tggcaatgcc
     9061 gggacgaacg gaaaatgcca gaccatgcgc ctgtcccggt ccgtgataag gatcctggcc
     9121 gagaatcacc actttaacgt cacccaactc ggtaaagcgg aacgcgttaa agacatcttt
     9181 ttgtggtgga tagatagtga cgccggactg ccgctcgctg gcgacggtct gaagggtatt
     9241 aagaaaataa ggttgttgct tctcttcagc cagcacgtca tgccaggtta attcgttagc
     9301 catctcgctc tcctgcgaat cttcaatccg cctagcttaa ctgcttcttt ctacagaaca
     9361 aaatcatgct cattttttag acttaaacga gtgcaaaaaa atgtaaattg gtaaaatttc
     9421 acacccgcat aagttgatgt aaaacaataa aatccattta cgaccacaat cgatgtgtgg
     9481 tttttattga tttaaatcaa agaatcaagg gtggttgagg agtatatata cactcaagca
     9541 acaatggttt taccaattag ccgcgacagg ctgaacaaat caaataattt tgccggggag
     9601 gcatcacatg attacaggta tccagattac taaagccgct aacgacgatc tgctgaactc
     9661 tttctggctg ctggacagcg aaaaaggcga agcacgttgc atcgttgcaa aagcaggtta
     9721 tgcagaagat gaagtggttg cagtaagcaa actgggtgac attgaatacc gtgaagttcc
     9781 agtagaagtg aaaccagaag ttcgcgttga aggtggtcaa cacctgaacg ttaacgttct
     9841 gcgtcgtgaa actctggaag atgcagttaa gcatccggaa aaatatccgc agctgaccat
     9901 ccgtgtatcc ggttatgcag ttcgctttaa ctctctgact ccggaacagc agcgcgacgt
     9961 tatcgctcgt acctttactg aaagcctgta aggcttaagt agcaagttac taagcggaag
    10021 agggcgacct cttccgcttt ttttcgttaa tagaaaatgc gtaccgcgca atagaccagc
    10081 aacagggcaa gcacgatatt taactggcga ccatactggc gaaacaatcg ctgaaacaga
    10141 tgccccgcca gcgcccagca cacattgcca aacgtcccaa tcatcgccag caaaacgctg
    10201 acgccaacta cccagcttag cgcctgtgtt tgcggcagaa caaacgtcga cagtgccgta
    10261 acaccgtaca aaatgatttt gacgttcaca aactgcaaag caaagctggc ccaaaagctg
    10321 attggttttg cctgaagtcc gtcttccttt gttgggctgg tggcgatttt ccacgccagc
    10381 cagacaatat atgccgcccc cgcccaactc aaaaggtgta ccgctgccgg gtcaatcact
    10441 gccagtgaaa atgaaatgcc cgcacacagt aacatcacaa tcaaaaatcc cagactcatc
    10501 cctgccagca cgcgggtact ttgacgaaat ccatgcgacg tagcagagct aagggcgaga
    10561 atattgttcg gtcttggcgt catagcggta atcagggtgt aagtccaaaa agcacttaaa
    10621 agggtcggtg tcacttgtta tctcctctgt tttggtagac agt
//
LOCUS       DAJVSY010000144        10464 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.146, whole genome shotgun sequence.
ACCESSION   DAJVSY010000144 DAJVSY010000000
VERSION     DAJVSY010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10464)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10464)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10464
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.146"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(28..1926)
                     /gene="espL1"
                     /locus_tag="OQQ19_003311"
                     /pseudo
     CDS             complement(28..1926)
                     /gene="espL1"
                     /locus_tag="OQQ19_003311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310454.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector EspL1"
     gene            2448..4376
                     /gene="thrS"
                     /locus_tag="OQQ19_003312"
     CDS             2448..4376
                     /gene="thrS"
                     /locus_tag="OQQ19_003312"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006894721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HCS1804820.1"
                     /translation="MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGEL
                     VDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGF
                     YYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHAARETFANRGESYKVSIL
                     DENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRI
                     YGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRE
                     LEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNC
                     PGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ
                     IRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNI
                     PFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPV
                     MIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAG
                     IRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEV
                     IEKLQQEIRSRSLKQLEE"
     gene            4380..4922
                     /gene="infC"
                     /locus_tag="OQQ19_003313"
     CDS             4380..4922
                     /gene="infC"
                     /locus_tag="OQQ19_003313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HCS1804821.1"
                     /translation="MKGGKRVQTARPNRINGEIRAQEVRLTGLEGEQLGIVSLREALE
                     KAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQKKKQRVIQVKEIKFRPGT
                     DEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVES
                     FPTKIEGRQMIMVLAPKKKQ"
     gene            5019..5216
                     /gene="rpmI"
                     /locus_tag="OQQ19_003314"
     CDS             5019..5216
                     /gene="rpmI"
                     /locus_tag="OQQ19_003314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HCS1804822.1"
                     /translation="MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHL
                     RPKAMVSKGDLGLVIACLPYA"
     gene            5269..5625
                     /gene="rplT"
                     /locus_tag="OQQ19_003315"
     CDS             5269..5625
                     /gene="rplT"
                     /locus_tag="OQQ19_003315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HCS1804823.1"
                     /translation="MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQ
                     YAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFD
                     KVAFTALVEKAKAALA"
     misc_feature    5742..5866
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01859"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Phe leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF01859"
     gene            5748..5792
                     /gene="pheM"
                     /locus_tag="OQQ19_003316"
     CDS             5748..5792
                     /gene="pheM"
                     /locus_tag="OQQ19_003316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pheST operon leader peptide PheM"
                     /protein_id="HCS1804824.1"
                     /translation="MNAAIFRFFFYFST"
     gene            6075..7058
                     /gene="pheS"
                     /locus_tag="OQQ19_003317"
     CDS             6075..7058
                     /gene="pheS"
                     /locus_tag="OQQ19_003317"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004851795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HCS1804825.1"
                     /translation="MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTT
                     LRELPPEERPAAGAVINEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIE
                     NGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF
                     DTTRLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNI
                     SFTNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVH
                     PNVLRNVGIDPEVYSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQFK"
     gene            7073..9460
                     /gene="pheT"
                     /locus_tag="OQQ19_003318"
     CDS             7073..9460
                     /gene="pheT"
                     /locus_tag="OQQ19_003318"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HCS1804826.1"
                     /translation="MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFHG
                     VVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVLPGD
                     FKIKAAKLRGEPSEGMLCSFSELGISDDHSGIIELPADAPIGTDIREYLKLDDNTIEI
                     SVTPNRADCLGIIGVARDVAVLNQLPLVEPEIVPVGATIDDTLPITVEAPEACPRYLG
                     RVVKGINVKAPTPLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGI
                     VVRMAKEGETLVLLDGTEAKLNADTLVIADHNKALAMGGIFGGEHSGVNDETQNVLLE
                     CAFFSPLSITGRARRHGLHTDASHRYERGVDPALQHKAMERATRLLIDICGGEAGPVI
                     DITNEATLPKRATITLRRSKLDCLIGHHIADEQVTDILRRLGCEVTEGKDEWQAVAPS
                     WRFDMEIEEDLVEEVARVYGYNNIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQ
                     EVITYSFVDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNR
                     VRIFESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESV
                     LDLTGKLNEVEFRAEANPALHPGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVF
                     ELEWNKLADRVVPQAREISRFPANRRDIAVVVAENVPAADILSECKKVGVNQVVGVNL
                     FDVYRGKGVAEGYKSLAISLILQDTSRTLEEEEIAATVAKCVEALKERFQASLRD"
     gene            9465..9764
                     /gene="ihfA"
                     /locus_tag="OQQ19_003319"
     CDS             9465..9764
                     /gene="ihfA"
                     /locus_tag="OQQ19_003319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HCS1804827.1"
                     /translation="MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQV
                     KLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE"
     gene            complement(10068..10208)
                     /locus_tag="OQQ19_003320"
     CDS             complement(10068..10208)
                     /locus_tag="OQQ19_003320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000078918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hok/Gef family protein"
                     /protein_id="HCS1804828.1"
                     /translation="MSQKSLTAITFCVTAILIIWMLHGSLCEIRMSFWGAEFAAFLQC
                     KQ"
BASE COUNT         2751 a         2368 c         2667 g         2678 t
ORIGIN      
        1 taagttggca gcattaccaa tagttggtta taaatacgtc tttagttcat cagcactaaa
       61 actcaggctt tggctgatta catttatagc agcataatat gtttctacag ttttataatg
      121 attatgatga atggctatat gaacagctga catgttgtca tgatttttag cggccaacag
      181 tgtgaataac tgacgttgac taaaagaata tttttttgca aaaatattca gcgtcgatat
      241 ataagataac acgacgtctt cattaccctt gctcatggcg atgtataata caggggttcc
      301 atgtgctgta gcgcctttta ataaatccat gatgttagct ttgctcaact tgtatttaaa
      361 ggcgatgcca ttaattttag agaggaaccg tgtgacacac aaagggtgat tattttccat
      421 tgcagcaaac aaccctagtt caccatcacg tgttttcatt gctaaaatat ccatcactat
      481 ttttttgttt aaaagctctt gtgctattgg agtggttaat gcattcagaa agatatcgat
      541 tgtttcatcg aacccataca acatggagat atagagccca ggtgtttcgt tagcactttt
      601 agtttgcagt aatttaacca gattatcttc atgaatgata tgattgtata tcagtgactg
      661 aatttcttgc ataaatattt ttacgttgtc agtatgtccg ttcatcatag ccagaaataa
      721 agcaggtgta ccaacgctat tctgcgcagt tattatttca atgatttctt tttcagggag
      781 tatgggcaac tgtttgaata atgtaataag ctgttgagtc tggcctgtgg ccattattaa
      841 caacattgcc gatggatgta taggggcaaa tggcattcgt gatgcaatac ccgcgaaaat
      901 agcccctgga actcccacag gtaatagggg cagaatagca attgcacagt tgcgaacata
      961 cctatcagcc caggtctgag catcgggacc tgaactgatg aacttatcaa gcgaaagaaa
     1021 gccccgtgct gtcctgtggg tgcctctgac ggcaacgttg gtatcgttcg ggtcgtagac
     1081 ggacactaca tagtttaatt gtccatacac taactgcttt attcgtagcc ttactgacaa
     1141 agtatgattg tctatatata aaatcgcgga catatgactg acattgtttg ccatcattcg
     1201 acaaaagaaa atatctaaag cgaagccaaa atccttactc gcgataacgc gactccctgc
     1261 aggaggatgg cgaagtaatg ctctgaactc cgcatcccgg actaagggga catgctgctg
     1321 tatggattca acggaggagt aatgtttaat caggttgact ttgccttttc catttctcaa
     1381 tgaatcaagg gcgtattgca atgacagatg gcgacaaaaa atagcgtcag aaggagattg
     1441 caaaaaacat gcactaccat tgagatttac tgttggttgt atagtttttt ctctatggat
     1501 ttttttagac agtttcatac aatggttacg atcttcggca gttaactgtt cctgctcaat
     1561 ataatccagt atgcttcaca aatggttagc cttaataggc gtggtttcca gaaataaggg
     1621 aatgatttct tttttatagt gtaatgtaat aagtatattt tctgcatgga tgggtgaagt
     1681 ggcaaagtta atgataaaaa gggcagtgga gtaacaattt tgtgatattt ttcgacagtt
     1741 tgcggtaaat tcctgagtaa tacagtatga cagcatcgaa cttaagtcag aggtatcaag
     1801 tagggtgatg agttggcgcg caaattgatt aataagctct gatgaaggcg ttggtatgtc
     1861 gctatcgatg tgcaatctat gaggagactt ataatgagtt ctgataatga tatcgttttg
     1921 actcataatc tattcacctt atatatactg gaggttttga ggatgatgat taattattat
     1981 cgccagaacg aaatgtgcac gaaaaattgc tataagaatt gtgtcacttt tatcattgtg
     2041 atatgaccac ttcgtcatta atctcatgat cgtttaaata ctaccgccaa atcacgcaac
     2101 gaactttgct ggattcagtt tatgctgctg taaatccgct cgcagtaaac ctttcagacg
     2161 caccgtgatg ttatcagtgg ttctttaagc gttttgctgg tgtactcact acaaacgaat
     2221 tgcgaatcga atcaatgtga aacggaaagg tacaatctcc ctttttttag tgttaacatc
     2281 gttcaaccgg gtggaaggtg agaggttaat gtctttcatt tgtgtacctg attgcgaacc
     2341 aatttagcat ttgttggcta gatggtttcg caatgaactg ttaataaaca aatttttctt
     2401 tgtatgtgat ctttcgtgtg ggtcaccact gcaaataagg atataaaatg cctgttataa
     2461 ctcttcctga tggcagccaa cgccattacg accacgctgt aagccccatg gatgttgcgc
     2521 tggacattgg tccaggtctg gcgaaagcct gtatcgcagg gcgcgttaat ggcgaactgg
     2581 ttgatgcttg cgatctgatt gaaaacgacg cacaactgtc gatcattacc gccaaagacg
     2641 aagaaggtct ggagatcatt cgtcactcct gtgcgcacct gttagggcat gcgattaaac
     2701 aactttggcc gcataccaaa atggcaatcg gcccggttat tgacaacggt ttttattacg
     2761 acgttgatct tgaccgcacg ttaacccagg aagatgtcga agcactcgag aagcggatgc
     2821 atgagcttgc tgagaaaaac tacgacgtca ttaagaagaa agtcagctgg cacgcagcgc
     2881 gtgaaacttt cgccaaccgt ggggagagct acaaagtctc cattcttgac gaaaacatcg
     2941 cccatgatga caagccaggt ctgtacttcc atgaagaata tgtcgatatg tgccgcggtc
     3001 cgcacgtacc gaacatgcgt ttctgccatc atttcaaact aatgaaaacg gcaggggctt
     3061 actggcgtgg cgacagcaac aacaaaatgt tgcaacgtat ttacggtacg gcgtgggcag
     3121 acaaaaaagc acttaacgct tacctgcagc gcctggaaga agccgcgaaa cgcgaccacc
     3181 gtaaaatcgg taaacagctc gacctgtacc atatgcagga agaagcgccg ggtatggtat
     3241 tctggcacaa cgacggctgg accatcttcc gtgaactgga agtgtttgtt cgttctaaac
     3301 tgaaagagta ccagtatcag gaagttaaag gtccgttcat gatggaccgt gtcctgtggg
     3361 aaaaaaccgg tcactgggac aactacaaag atgcaatgtt caccacatct tctgagaacc
     3421 gtgaatactg cattaagccg atgaactgcc cgggtcacgt acaaattttc aaccaggggc
     3481 tgaagtctta tcgcgatctg ccgctgcgta tggccgagtt tggtagctgc caccgtaacg
     3541 agccgtcagg ttcgctgcat ggcctgatgc gcgtgcgtgg atttacccaa gatgacgcgc
     3601 atatcttctg tactgaagaa caaattcgcg atgaagttaa cggatgtatc cgtttagtct
     3661 atgatatgta cagcactttt ggcttcgaga agatcgtcgt caaactctcc actcgtcctg
     3721 aaaaacgtat tggcagcgac gaaatgtggg atcgtgctga ggcggacctg gcggttgcgc
     3781 tggaagaaaa caacatcccg tttgaatatc aactgggtga aggcgctttc tacggtccga
     3841 aaattgaatt taccctgtat gactgcctcg atcgtgcatg gcagtgcggt acagtacagc
     3901 tggacttctc cttgccgtct cgtctgagcg cctcctatgt gggcgaagac aacgagcgta
     3961 aggtaccggt aatgattcac cgcgcaattc tggggtcgat ggaacgtttc atcggtatcc
     4021 tgaccgaaga attcgctggt ttcttcccga cctggcttgc gccagttcag gttgttatca
     4081 tgaatattac cgattcacag tctgaatacg ttaacgaatt gacgcaaaaa ctatcaaatg
     4141 cgggcattcg tgttaaagca gacttgagaa atgagaagat tggctttaaa atccgcgagc
     4201 acactttgcg tcgcgtccca tatatgctgg tctgtggtga taaagaggtg gaatcaggca
     4261 aagttgccgt tcgcacccgc cgtggtaaag acctgggaag catggacgta aatgaagtga
     4321 tcgagaagtt gcaacaagag attcgcagcc gcagtcttaa acaattggag gaataaggta
     4381 ttaaaggcgg aaaacgagtt caaacggcgc gccctaaccg tatcaatggc gaaattcgcg
     4441 cccaggaagt tcgcttaaca ggtctggaag gcgagcagct tggtattgtg agtctgagag
     4501 aagctctgga gaaagcagaa gaagccggag tagacttagt cgagatcagc cctaacgccg
     4561 agccgccggt ttgtcgtata atggattacg gcaaattcct ctatgaaaag agcaagtctt
     4621 ctaaggaaca gaagaaaaag caaagagtta tccaggttaa ggaaattaaa ttccgtcctg
     4681 gtacagatga aggcgactat caggtaaaac tccgcagcct gattcgcttt ctcgaagagg
     4741 gtgataaagc caaaatcacg ctgcgtttcc gcggtcgtga gatggcgcac cagcaaatcg
     4801 gtatggaagt gcttaatcgc gtgaaagacg atttgcaaga actggcagtg gtcgaatcct
     4861 tcccaacgaa gatcgaaggc cgccagatga tcatggtgct cgctcctaag aagaaacagt
     4921 aaggccttca agtagcactg tctgtggagc cttcgggctt cacaggcttt gttcgccttt
     4981 gtttcgttta ttaacaatgc gaagtggaag ttattaaaat gccaaaaatt aagaccgtac
     5041 gcggtgctgc taagcgcttc aaaaaaaccg gtaaaggtgg ttttaagcac aagcacgcta
     5101 acctgcgtca cattctgacc aaaaaagcga ccaaacgtaa acgtcacctg cgtccgaaag
     5161 ccatggtttc caaaggcgat ctgggcctgg taatcgcgtg cctgccgtac gcataagccg
     5221 ttaacgtttt taacttttta attagaatat agatacagga gagcacatat ggctcgcgta
     5281 aaacgtggtg ttattgcacg cgcacgtcac aagaaaattt tgaaacaagc taaaggctac
     5341 tacggtgcgc gttctcgcgt ataccgcgtt gccttccagg ctgttatcaa agctggtcag
     5401 tatgcttacc gtgaccgtcg tcaacgtaag cgtcagttcc gtcaactgtg gattgcacgt
     5461 atcaacgcag cagcacgtca gaacggtatt tcttacagca aattcatcaa tggcctgaaa
     5521 aaagcctctg ttgaaatcga ccgtaagatc ctggctgata tcgcagtatt cgacaaagta
     5581 gcgttcaccg ctctggttga aaaagcgaaa gcagctctgg cataagccag ttgaaagagg
     5641 gagctagtct ccctcttttc gtttcaacgc catcaaaaca ttgactttta tcgccgtagc
     5701 cttttcaata aaggtctttt gaagagtacc aaaaggtaac gcaagcaatg aatgctgcta
     5761 ttttccgctt ctttttttac tttagcacct gaatccagga ggctagcgcg tgagaagaga
     5821 aacggaaaac agcgcctgaa agcctcccag tggaggcttt ttttgtatgc gcgttttgaa
     5881 aaataaaaag ccagtctatc aggcgtaatt gtcgcagcca gtctggatac ggccagcgcg
     5941 gagaaaccgg agcgtattta agtacgtgag aatttcgagc actgcccggg accaaaatgg
     6001 caagtaaaat agcctgatgg gataggctct aagtccaacg aaccagtgtc accactgaca
     6061 caatgaggaa aaccatgtca catctcgcag aactggttgc cagtgcgaag gcggccatta
     6121 gccaggcgtc agatgttgcc gcgttagata atgtgcgcgt cgaatatttg ggtaaaaaag
     6181 ggcacttaac ccttcagatg acgaccctgc gtgagctgcc gccagaagag cgtccggcag
     6241 ctggtgcggt tatcaacgaa gcgaaagagc aggttcagca ggcgctgaat gcgcgtaaag
     6301 cggaactgga aagcgcagcg ctgaatgcgc gtctggcggc ggaaacgatt gatgtctccc
     6361 tgccaggtcg tcgcattgaa aacggcggtc tgcatccggt tacccgtacc atcgaccgta
     6421 tcgaaagttt cttcggtgag cttggcttta ccgtggcaac cgggccggaa atcgaagacg
     6481 attatcataa cttcgatgct ctgaacattc ctggtcacca cccggcgcgc gctgaccacg
     6541 acactttctg gtttgacact acccgcctgc tgcgtaccca gacctctggc gtacagatcc
     6601 gcaccatgaa agcccagcag ccaccgattc gtatcatcgc gcctggccgc gtttatcgta
     6661 acgactacga ccagactcac acgccgatgt tccatcagat ggaaggtctg attgttgata
     6721 ccaacatcag ctttaccaac ctgaaaggca ctctgcacga tttcctgcgt aacttctttg
     6781 aggaagattt gcagattcgc ttccgtcctt cctacttccc gttcaccgag ccttctgcag
     6841 aagttgacgt catgggtaaa aacggtaaat ggctggaagt gctgggttgc gggatggtgc
     6901 atccgaacgt gctgcgtaac gttggcatcg acccggaagt ttactctggt ttcgccttcg
     6961 ggatggggat ggagcgtctg actatgttgc gttacggcgt caccgacctg cgttcattct
     7021 tcgaaaacga tctgcgtttc ctcaaacagt ttaaataagg caggaataga ttatgaaatt
     7081 cagtgaactg tggttacgcg aatgggtgaa cccggcgatt gatagcgatg cgctggcgaa
     7141 tcaaatcact atggcgggcc tggaagttga cggtgtagaa ccggttgccg gtagcttcca
     7201 cggcgtggtc gttggtgaag tggttgagtg tgcgcagcat ccgaacgctg acaaactgcg
     7261 tgtgacaaaa gtgaatgtcg gcggcgatcg cctgctggac atcgtctgtg gtgcgccaaa
     7321 ctgccgtcag ggcctgcgtg tggcggtagc taccattggt gctgttctgc cgggtgattt
     7381 caaaattaaa gcggcgaaac tgcgtggcga accgtctgaa gggatgctgt gctccttctc
     7441 tgaactggga atttctgacg atcacagcgg cattatcgaa ctgcctgcag atgcgccgat
     7501 tggcactgac atccgcgaat acctgaaact cgatgacaac accatcgaaa tcagcgtaac
     7561 gccaaaccgt gccgactgct taggtatcat tggtgttgcg cgtgacgttg ccgtgctgaa
     7621 tcagctgccg ctggttgaac cggaaatcgt tccggttggt gcgaccatcg acgacacgtt
     7681 gccgattaca gtcgaagcgc ctgaagcctg cccgcgctat cttggccgtg tggtaaaagg
     7741 cattaacgtt aaagcgccaa ctccgctgtg gatgaaagaa aaactgcgtc gttgcgggat
     7801 ccgttctatc gatgcagttg ttgacgtcac caactatgta ctgctcgaac tgggccagcc
     7861 gatgcacgct ttcgataaag atcgcattga aggcggcatt gtggtgcgga tggcaaaaga
     7921 gggcgaaacg ctggtgctgc ttgatggcac tgaagcgaag ctgaatgctg acactctggt
     7981 catcgccgac cacaacaagg cgctggcgat gggcggcatc tttggtggcg aacactctgg
     8041 cgtgaatgac gaaacgcaaa acgtcttgct ggaatgcgct ttcttcagcc cgctgtctat
     8101 caccggtcgt gctcgtcgtc atggcctgca tactgatgcg tctcaccgtt atgagcgtgg
     8161 cgttgatccg gcactgcagc acaaagcgat ggaacgtgcg acccgtctgc tgatcgacat
     8221 ctgcggtggt gaggctggtc cggtaattga tatcaccaac gaagcaacgc tgccgaagcg
     8281 tgcaaccatc actttacgtc gtagcaaact ggattgcctg atcggccatc atattgctga
     8341 tgaacaggta actgacattc tgcgtcgtct cggctgcgaa gtgaccgaag gcaaagacga
     8401 gtggcaggca gttgcgccga gctggcgttt cgatatggag attgaagaag atctggtcga
     8461 agaagtcgcg cgtgtttacg gctacaacaa catcccggat gagccggtac aggcaagcct
     8521 gattatgggt actcaccgtg aagctgacct gtcgctcaag cgcgtgaaaa cgctgctcaa
     8581 cgacaaaggc tatcaggaag tgatcaccta cagcttcgtt gatccgaaag tgcagcagat
     8641 gatccatcca ggcgttgaag ccttactgct gccaagcccg atctctgttg aaatgtcagc
     8701 aatgcgtctt tctctgtgga ccggcctgct ggcaaccgtg gtgtacaacc agaaccgtca
     8761 gcagaaccgt gtgcgcattt tcgaaagcgg tctgcgtttc gtaccagata ctcaggcacc
     8821 gttgggcatt cgtcaggatc tgatgttagc cggtgtgatt tgcggtaacc gttacgaaga
     8881 gcactggaac ctggcaaaag agaccgttga tttctatgat ttgaaaggcg atcttgaatc
     8941 cgttctcgac ctgaccggta aactgaatga ggttgagttc cgtgcagaag cgaatccggc
     9001 actgcatccg gggcaatccg cagcgattta tctgaaaggg gaacgtattg gttttgttgg
     9061 agttgttcat cctgaactgg aacgtaaact ggatcttaac ggtcgcactc tggtgttcga
     9121 actggagtgg aacaagctcg cagaccgcgt ggtgcctcag gcgcgcgaga tttctcgctt
     9181 cccggcgaac cgtcgtgaca tcgcggtggt ggtcgcagaa aacgttcccg cagcggatat
     9241 tttatccgaa tgtaagaaag ttggcgtaaa tcaggtagtt ggcgtaaact tatttgacgt
     9301 gtaccgcggt aagggtgttg cggaggggta taagagcctc gccataagcc tgatcctgca
     9361 agataccagc cgtacactcg aagaagagga gattgccgct accgtcgcca aatgtgtaga
     9421 ggcattaaaa gagcgattcc aggcatcatt gagggattga acctatggcg cttacaaaag
     9481 ctgaaatgtc agaatatctg tttgataagc ttgggcttag caagcgggat gccaaagaac
     9541 tggttgaact gtttttcgaa gagatccgtc gcgctctgga aaacggcgaa caggtgaaac
     9601 tctctggttt tggtaacttc gatctgcgtg ataagaatca acgcccggga cgtaacccga
     9661 aaacgggcga ggatattccc attacagcac ggcgcgtggt gaccttcaga cccgggcaga
     9721 agttaaaaag ccgggtcgaa aacgcttcgc ccaaagacga gtaatctgat ctaactaaaa
     9781 aggccgctct gcggcctttt ttctttcaat aactaattga tttataatgt tttatatctc
     9841 ttcgttccac gatgcgtcca catttagtgg ggggagggga gtaagcccgc tacattgtgg
     9901 gctttgtctt atagtctgat cactgtttca agtcggtgag gacaccaaaa agaacccccg
     9961 cagtttttac gctgcgggtt tgttgttcat gtctgtgaga tagggtgcct tatcgacctt
    10021 accctggcaa ccgattgacg ggggattgct cccccgtcgc ggtttcctta ctgcttacac
    10081 tgtaagaacg ccgcaaactc cgctccccag aagctcatcc gtatttcgca cagcgaaccg
    10141 tgcagcatcc agatgatgag gattgccgtc acgcagaacg tgatggccgt aagcgatttt
    10201 tgcgacatag cgcttgctcc tttttcgggg aggcgctaac ctatcacttg cttagggtag
    10261 acggttaggg cctcggttaa acaaaaatgt tttccggggc ctttccacat ctggccttca
    10321 ggtattccct ccgaccatca gccgaaaggc acccgcgcgt aatctatcgc ttttttgtta
    10381 ctccggcaat tctgctcgtt aattctgagg taagggcaaa ctcatctgat tgtttcctct
    10441 gtgtgaagtt ggcagttcat gcca
//
LOCUS       DAJVSY010000145        10424 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.147, whole genome shotgun sequence.
ACCESSION   DAJVSY010000145 DAJVSY010000000
VERSION     DAJVSY010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10424
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.147"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            141..2009
                     /gene="kup"
                     /locus_tag="OQQ19_003321"
     CDS             141..2009
                     /gene="kup"
                     /locus_tag="OQQ19_003321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity potassium transporter Kup"
                     /protein_id="HCS1804829.1"
                     /translation="MSTDNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGV
                     ERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNTSARTTSML
                     VIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFMIQKH
                     GTAMVGKLFAPIMLTWFLILAGLGLRSIIANPEVLHALNPMWAVHFFLEYKTVSFIAL
                     GAVVLSITGVEALYADMGHFGKFPIRLAWFTVVLPSLTLNYFGQGALLLKNPEAIKNP
                     FFLLAPDWALIPLLIIAALATVIASQAVISGVFSLTRQAVRLGYLSPMRIIHTSEMES
                     GQIYIPFVNWMLYVAVVIVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTVARQNWHW
                     NKYFVALILIAFLCVDIPLFTANLDKLLSGGWLPLSLGTVMFIVMTTWKSERFRLLRR
                     MHEHGNSLEAMIASLEKSPPVRVPGTAVYMSRAINVIPFALMHNLKHNKVLHERVILL
                     TLRTEDAPYVHNVRRVQIEQLSLTFWRVVASYGWRETPNVEEVFHRCGLEGLSCRMME
                     TSFFMSHESLILGKRPWYLRLRGKLYLLLQRNALRAPDQFEIPPNRVIELGTQVEI"
     gene            2176..2595
                     /gene="rbsD"
                     /locus_tag="OQQ19_003322"
     CDS             2176..2595
                     /gene="rbsD"
                     /locus_tag="OQQ19_003322"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709562.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HCS1804830.1"
                     /translation="MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMAL
                     TQGVPSFMQVLGVVTNEMQVEAAIIAEEIKQHNPQLHETLLTHLEQLQKHQGNTIEIR
                     YTTHEQFKQQTAESQAVIRSGECSPYANIILCAGVTF"
     gene            2603..4072
                     /gene="rbsA"
                     /locus_tag="OQQ19_003323"
                     /pseudo
     CDS             2603..4072
                     /gene="rbsA"
                     /locus_tag="OQQ19_003323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418205.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter ATP-binding protein RbsA"
     gene            4077..5042
                     /gene="rbsC"
                     /locus_tag="OQQ19_003324"
     CDS             4077..5042
                     /gene="rbsC"
                     /locus_tag="OQQ19_003324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter permease"
                     /protein_id="HCS1804831.1"
                     /translation="MTTQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTIN
                     NLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVA
                     AALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADL
                     FGWFGIGRPLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNK
                     IKIIVYSLCGLLASLAGTIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIV
                     GTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ"
     gene            5067..5953
                     /gene="rbsB"
                     /locus_tag="OQQ19_003325"
                     /pseudo
     CDS             5067..5953
                     /gene="rbsB"
                     /locus_tag="OQQ19_003325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312720.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter substrate-binding protein
                     RbsB"
     gene            6079..7008
                     /gene="rbsK"
                     /locus_tag="OQQ19_003326"
     CDS             6079..7008
                     /gene="rbsK"
                     /locus_tag="OQQ19_003326"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HCS1804832.1"
                     /translation="MQNAGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKG
                     ANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV
                     NGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLESPLESVMAAAKIAHQNK
                     TIVALNPAPARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIR
                     TVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIR
                     FAHAAAAIAVTRKGAQPSVPWREEIDAFLDRQR"
     gene            7012..8004
                     /gene="rbsR"
                     /locus_tag="OQQ19_003327"
     CDS             7012..8004
                     /gene="rbsR"
                     /locus_tag="OQQ19_003327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose operon transcriptional repressor RbsR"
                     /protein_id="HCS1804833.1"
                     /translation="MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELN
                     YAPSALARSLKLNQTHTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQ
                     RMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
                     SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTG
                     DFEFNGGFDAMRQLLSHPLRPQAVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDI
                     ELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQLTPILMERGSA"
     gene            complement(7970..9397)
                     /gene="mdtD"
                     /locus_tag="OQQ19_003328"
     CDS             complement(7970..9397)
                     /gene="mdtD"
                     /locus_tag="OQQ19_003328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter subunit MdtD"
                     /protein_id="HCS1804834.1"
                     /translation="MSDKKKRSMAGLPWIAAMAFFMQALDATILNTALPAIAHSLNRS
                     PLAMQSAIISYTLTVAMFIPVSGWLADRFGTRRIFTLAVSLFTLGSLACALSNSLPQL
                     VVFRVIQGIGGAMMMPVARLALLRAYPRNELLPVLNFVAMPGLVGPILGPVLGGVLVT
                     WATWHWIFLINIPIGIAGLLYARKHMPNFTTARRRFDITGFLLFGLSLVLFSSGIELF
                     GEKIVASWIALTVIVTSIGLLLLYILHARHTPNPLISLDLFKTRTFSIGIVGNIATRL
                     GTGSVPFLMPLMLQVGFGYQAFIAGCMMAPTALGSIIAKSMVTQVLRRLGYRHTLVGI
                     TVIIGLMIAQFSLQSPAMAIWMLILPLFILGMAMSTQFTAMNTITLADLTDDNASSGN
                     SVLAVTQQLSISLGVAVSAAVLRVYEGMEGTTTVEQFHYTFITMGIITVASAAMFMLL
                     KTTDGNNLIKRQRKSKPNRVPSESE"
     gene            complement(9420..10112)
                     /locus_tag="OQQ19_003329"
     CDS             complement(9420..10112)
                     /locus_tag="OQQ19_003329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312724.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FadR family transcriptional regulator"
                     /protein_id="HCS1804835.1"
                     /translation="MPLSAQQLAAQKNLSYVLAEKLAQRILKGEYEPGTILPGEIELG
                     EQFGVSRTAVREAVKTLTAKGMVLPRPRIGTRVMPQSNWNFLDQELLTWWMTEENFHQ
                     VIDHFLVMRICLEPQACLLAATVGTAEQKAHLNTLMAEMAALKKNFRRERWIEVDMAW
                     HEHIYEMSANPFLTSFASLFHSVYHTYFTSITSDTVIKLDLHQAIVDAIIQSDGDAAF
                     KTCQALLRSPDK"
BASE COUNT         2550 a         2515 c         2751 g         2608 t
ORIGIN      
        1 aaggggggta tttttctttg agccaggtta atgtggccgc atttaggagt acgattttgc
       61 cgttaatcgt gcatactgtg cgcttttttg tgggccaagg gactaagcac acatttcata
      121 tttcaacgaa agactagtct atgagcactg ataataagca atcattgccc gcgattaccc
      181 tcgcggcgat tggagttgtc tacggcgata ttggtaccag cccgttatat acacttcgtg
      241 aatgtttgtc cggccagttt ggttttggcg ttgaacgcga tgccgtgttt ggctttttat
      301 cgctgatctt ctggctgcta atctttgtgg tttccattaa atatctcacc ttcgtgatgc
      361 gggcagataa cgccggtgag ggggggatcc tgacgttgat gtcgcttgcc gggcgtaata
      421 cgtcggcgcg aaccacatca atgctggtga ttatggggct aatcggcggc agctttttct
      481 atggtgaagt cgtcataaca cccgctattt cggtgatgtc agccattgaa ggtctggaaa
      541 tcgtcgcccc gcagctggat acctggatag ttcccctctc aattatcgtt ctcactttat
      601 tatttatgat tcaaaaacat ggcacggcta tggtcggtaa gctgtttgcg ccgatcatgc
      661 tgacctggtt tttgattctg gcaggactgg ggttacgtag cattattgct aacccggaag
      721 tgctgcatgc gctgaatcca atgtgggcgg tgcatttctt ccttgaatac aaaacggttt
      781 cttttattgc attaggggca gtggtgttgt cgattacggg ggtcgaggcg ctgtatgctg
      841 atatggggca ctttggtaag ttccctattc gcctggcgtg gttcaccgtc gtattacctt
      901 ccttgaccct taattacttc ggtcagggag cgctgttgtt aaagaacccg gaagcgatta
      961 agaacccgtt cttcctgttg gcaccggact gggcgctgat cccgctgctg atcatcgccg
     1021 cactggcgac ggtaattgcc tcgcaggcgg ttatctctgg cgtcttctca ttgacgcgtc
     1081 aggcggtacg tctgggatat ttgtcgccga tgcgcattat tcacacctcc gaaatggagt
     1141 cagggcaaat ctatattccg tttgtgaact ggatgctcta tgtcgcggtc gtgattgtga
     1201 ttgtcagctt tgagcactcc agcaacctgg cggcggcgta cgggattgcg gtgaccggaa
     1261 ccatggtgct gacgtctatt ctctcgacta ccgtggcacg tcagaactgg cactggaata
     1321 agtattttgt tgcgctgatc ctgattgctt tcctttgtgt cgatattcca ttgttcaccg
     1381 ctaacctcga taaactgctc tccggcggtt ggttgccatt gagcctcggt acggtgatgt
     1441 ttatcgtgat gaccacctgg aagagcgagc gtttccgctt gctgcggcgg atgcatgaac
     1501 atggtaactc tctggaagcg atgattgctt cgctggagaa atcaccgcct gttcgcgtgc
     1561 ccgggaccgc ggtgtatatg tcgcgtgcaa tcaacgtcat tccctttgcg ctgatgcata
     1621 accttaaaca taacaaggta ttgcatgagc gggtgattct gttaactctg cgtaccgaag
     1681 acgcgccata tgtccataat gtccgtcggg tacagattga acaactgtcg ctcactttct
     1741 ggcgcgtggt ggcaagttat ggttggcgag aaacgccaaa cgtggaagaa gttttccacc
     1801 gctgcggtct ggaaggatta agttgccgga tgatggaaac ctccttcttt atgtcgcatg
     1861 agtcgttgat cctcggcaaa cgcccgtggt atttgcgtct gcgcggcaag ctgtacttgc
     1921 tgctgcaacg taatgcgctg cgtgcaccag atcaatttga aatcccgcca aacagggtta
     1981 tcgaactggg tactcaggtc gaaatctaac gccagacgcc tcctttctcc ataagggggc
     2041 gtttttgttt tcatggttaa tcaccatgta aaacgtttcg aggttgatca catttccgta
     2101 acgtcacgat ggttttccca actcagtcag gattaaactg cgggtcagcg aaacgtttcg
     2161 ctgatggaga aaaaaatgaa aaaaggcacc gttcttaatt ctgatatttc atcggtgatc
     2221 tcccgtctgg gacataccga tacgctggtg gtgtgtgatg ctggtttacc catccccaaa
     2281 agtacaacgc gtatcgatat ggcattaacc cagggtgtac cttcttttat gcaggtgctg
     2341 ggcgtcgtta caaatgaaat gcaggtcgag gctgccatta tcgcggaaga gatcaaacaa
     2401 cataatccgc aactccacga aacgttgctc actcaccttg agcagctgca aaaacaccag
     2461 ggaaatacca ttgaaattcg ttacaccacg catgaacaat tcaaacaaca aaccgcagaa
     2521 agtcaggcgg taattcgcag cggagaatgt tctccgtatg cgaatatcat tctctgtgct
     2581 ggcgtgacgt tctgaggccg tcatggaagc attacttcag cttaaaggca tcgataaagc
     2641 cttcccgggc gtaaaagccc tctcgggcgc tgcgttaaat gtctatccgg gccgcgtgat
     2701 ggcgctggtg ggcgaaaacg gcgcgggtaa atccaccatg atgaaagtgc ttactggtat
     2761 ctatgctcgc gatgccggca cgcttttatg gctggggaaa gaaacgacat ttaccgggcc
     2821 gaaatcttcc caggaagccg ggattgggat tatccatcag gaactgaacc tgatcccgca
     2881 gttgaccatt gccgaaaaca ttttcctcgg tcgtgagttt gttaatcgct ttggcaaaat
     2941 tgactggaaa accatgtatg ccgaagcgga taaattgctg gctaaactta acctgcgctt
     3001 taaaagcgac aagctggtgg gcgatctttc catcggtgac cagcaaatgg ttgaaatcgc
     3061 caaagtgctg agctttgagt cgaaagtcat cattatggat gaaccgaccg atgcgctgac
     3121 cgataccgaa accgaatccc tgttccgcgt catccgcgaa ctaaaatcgc aaggccgcgg
     3181 tattgtctat atctcccacc gcatgaaaga aatcttcgag atttgcgatg ccgttaccgt
     3241 ttttcgtgac gggcaattta ttgctgagcg cgaagtggca tcactgaccg aagattcgct
     3301 gattgagatg atggtgggtc gcaagctgga agatcaatat ccacacctgg acaaagcgcc
     3361 gggagatatc cgcctgaaag tcgataatct ctgcggacct ggcgttaacg atgtctcttt
     3421 tactttacgc aaaggcgaaa ttcttggcgt ctctggtttg atgggcgcag gtcgtaccga
     3481 actgatgaaa gtgctctacg gcgcactacc gcgcaccagc ggttacgtca ccctggatgg
     3541 gcatgaagtc gttacccgtt caccgcagga tggcctggca aacggcattg tgtatatctc
     3601 cgaagaccgt aaacgtgacg gtttagtgtt gggcatgtca gtaaaagaga acatgtcgct
     3661 gacagcgctg cgctacttca gccgcgctgg cggcagtttg aagcatgccg atgaacagta
     3721 ggctgtgagt gatttcattc gtctgtttaa tgtgaaaaca ccgtcgatgg aacaggcaat
     3781 tggtctgctt tccggtggca atcagcaaaa agtgttgatc cttgatgaac ctacccgtgg
     3841 cgtagatgtc ggcgcgaaaa aagagatcta tcaactgatt aaccagttca aagccgatgg
     3901 cttgagcatc attctggtgt catcggagat gccagaagta ttaggcatga gcgatcgcat
     3961 catcgtcatg catgaagggc atctcagcgg ggaatttact cgtgagcagg ccacccagga
     4021 agtgttaatg gctgccgctg tgggcaagct taatcgcgtg aatcaggagt aaaaaaatga
     4081 caacccagac tgtctctggt cgccgttatt tcacgaaagc gtggctgatg gagcagaaat
     4141 cgcttatcgc tctgctggtg ctgatcgcga ttgtctcgac gttaagcccg aactttttca
     4201 ccatcaataa cttattcaat attctccagc aaacctcggt gaacgccatt atggcggtcg
     4261 ggatgacgct ggtgatcctg acttcgggca tcgacttgtc tgtaggttct ctgttggcgc
     4321 taaccggcgc agttgctgca tctatcgtcg gcattgaagt caatgcgctg gtggctgtcg
     4381 ctgctgctct cgcgttaggt gccgcaattg gtgcggtaac cggggtgatt gtagcgaaag
     4441 gtcgcgttca ggcgtttatc gctacgctgg ttatgatgct tttactgcgc ggcgtgacca
     4501 tggtttatac caacggtagc ccagtgaata ccggctttac tgagaacgcc gatctgtttg
     4561 gctggtttgg tattggtcgt ccgctgggcg taccgacgcc agtctggatc atggggattg
     4621 tcttcctcgc ggcctggtac atgctgcatc acacgcgtct ggggcgttac atctacgcgc
     4681 tgggcggcaa cgaagcggca acgcgtcttt ctggtatcaa cgtcaataaa atcaaaatca
     4741 tcgtctattc tctttgtggt ctgctggcat cgctggccgg gaccattgaa gtggcgcgtc
     4801 tctcctccgc acaacccacg gcggggactg gctatgagct ggatgctatt gctgcggtgg
     4861 ttctgggcgg tacgagtctg gcgggcggaa aaggtcgcat tgttgggacg ttgatcggcg
     4921 cattaattct tggcttcctt aataatggat tgaatttgtt aggtgtttcc tcctattacc
     4981 agatgatcgt caaagcggtg gtgattttgc tggcggtgct ggtagacaac aaaaagcagt
     5041 aataacgact acaggacatc ttgaatatga acatgaaaaa actggctacc ctggtttccg
     5101 ctgttgcgct aagcgccacc gtcagtgcga atgcgatggc aaaagacacc atcgcgctgg
     5161 tggtctccac gcttaacaac ccgttctttg tatcgctgaa agatggcgcg cagaaagagg
     5221 cggataagct tggctataac ctggtggtgc tggactccca gaacaacccg gcgaaagagc
     5281 tggcgaacgt gcaggactta accgttcgcg gcaccaaaat tctgctgatt aacccgaccg
     5341 actccgacgc agtaggtaat gctgtgaaga tggctaacca ggcgaacatc ccggttatca
     5401 ctcttgaccg ccaggcaacg aaaggtgaag tggtgagcca cattgcttct gataacgtac
     5461 tgggtggcaa aatcgccggt gattacatcg cgaagaaagc gggtgaaggt gccaaagtta
     5521 tcgagctgca aggcattgct ggtacatccg cagcccgtga acgtggcgaa ggcttccagc
     5581 aggccgttgc tgctcacaag tttaatgttc ttgccagcca gcagattttg atcgcactaa
     5641 aggtttgaac gtaatgcaga acctgttgac cgctcatccg gatgttcagg ctgtattcgc
     5701 gcagaatgat gaaatggcgc tgggcgcgct gcgcgcactg caaactgccg gtaaatcgga
     5761 tgtgatggtc gtcggatttg acggtacacc ggatggcgaa aaagcggtga atgatggcaa
     5821 actagcagcg actatcgctc agctacccga tcagattggc gcgaaaggcg tcgaaaccgc
     5881 agataaagtg ctgaaaggcg agaaagttca ggctaagtat ccggttgatc tgaaactggt
     5941 tgttaagcag tagttttaat caggttgtat gacctgatgg tgacataaat acgtcatcga
     6001 cagatgaacg tgtaatataa agaaaagcag ggcacgcgcc accctaacac ggtggcgcat
     6061 tttatggaca tcccgaatat gcaaaacgca ggcagcctcg ttgttcttgg cagcattaat
     6121 gctgaccaca ttcttaatct tcaatctttt cctactccag gcgaaaccgt aaccggtaac
     6181 cactatcagg ttgcatttgg cggcaaaggc gcgaatcagg ctgtggctgc tgggcgtagc
     6241 ggtgcgaata tcgcgtttat tgcctgtacg ggtgatgaca gcattggtga gagcgttcgc
     6301 cagcagctcg ccactgataa cattgatatt actccggtca gcgtgatcaa aggcgaatca
     6361 acaggtgtgg cgctgatttt tgttaatggc gaaggtgaga atgtcatcgg tattcatgcc
     6421 ggcgctaatg ctgccctttc cccggcgctg gtggaagcgc aacgtgagcg tattgccaac
     6481 gcgtcagcat tattaatgca gctggaatca ccactcgaaa gtgtgatggc agcggcgaaa
     6541 atcgcccatc aaaataagac tatcgttgcg cttaacccgg ctccggctcg cgaacttcct
     6601 gacgaactgc tggcgctggt ggacattatt acgccaaacg aaacggaagc agaaaagctc
     6661 accggtattc gtgttgaaaa tgatgaagat gcagcgaagg cggcgcaggt actgcatgaa
     6721 aaaggtatcc gtactgtact gattacttta ggaagtcgtg gtgtatgggc tagcgtgaat
     6781 ggtgaaggtc agcgcgttcc tggattccgg gtgcaggctg tcgataccat tgctgccgga
     6841 gataccttta acggcgcgtt aatcacggcg ttgctggaag aaaaaccatt gccagaggcg
     6901 attcggtttg cccatgctgc agctgcgatt gccgtaacac gtaaaggcgc acaaccttcc
     6961 gtaccgtggc gtgaagagat cgacgcattt ttagacaggc agaggtgacg cttggctaca
     7021 atgaaagatg ttgcccgcct ggcgggcgtt tctacctcaa cagtttctca cgttatcaat
     7081 aaagatcgct tcgtcagtga agcgattacc gccaaagttg aagcggcgat taaagaactc
     7141 aattacgcgc catcagccct ggcgcgtagc ctcaaactca atcaaacaca taccattggc
     7201 atgttgatca ctgccagtac caatcctttc tattcagaac tggtgcgtgg cgttgaacgc
     7261 agctgcttcg aacgcggtta tagtctcgtc ctttgcaata ccgaaggcga tgaacagcgg
     7321 atgaatcgca atctggaaac gctgatgcaa aaacgcgttg atggcttgct gttactgtgc
     7381 accgaaacgc atcaaccttc gcgtgaaatc atgcaacgtt atccgacagt gcctactgtg
     7441 atgatggact gggctccgtt cgatggcgac agcgatctta ttcaggataa ctcgttgctg
     7501 ggcggagact tagcaacgca atatctgatc gataaaggtc atacccgtat cgcctgtatt
     7561 accggtccgc tggataaaac tccggcgcgc ctgcggttgg aaggttatcg ggcggcgatg
     7621 aaacgtgcgg gtctcaacat tcctgatggc tatgaagtca ctggtgattt tgaatttaac
     7681 ggcgggtttg acgccatgcg ccaactgtta tcacatccgc tgcgtcctca ggccgtcttt
     7741 accggaaatg acgctatggc tgttggcgtt taccaggcgt tatatcaggc agagttacag
     7801 gttccgcagg atatcgcggt gattggctat gacgatatcg aactggcaag ctttatgacg
     7861 ccaccattaa ccactatcca ccaaccgaaa gatgaactgg gggagctggc gattgatgta
     7921 ctcatccatc ggataaccca gccgaccctt cagcaacaac gattacaact tactccgatt
     7981 ctgatggaac gcggttcggc ttagatttac gctgtctttt gatcaaatta ttaccatcgg
     8041 ttgttttcag aagcatgaac attgctgctg aagcaacagt aataatgccc atcgtgataa
     8101 acgtatagtg gaattgttcg acagtcgttg tgccttccat cccttcataa acgcgaagga
     8161 cggccgcact tacagcaacg cctaaactaa tcgacagttg ctgcgtgacc gccagaacac
     8221 tgttaccgct gctggcgttg tcatcggtca gatcggcaag tgtgatggta ttcatcgcgg
     8281 taaattgcgt cgacatagcc atccctaata taaacaacgg caagatcagc atccatatcg
     8341 ccattgccgg tgattgcaaa gagaactgag cgatcattag cccaataatc accgtgatcc
     8401 ccactaacgt atggcgatag cccagacgac gtaagacttg ggtaaccatc gattttgcaa
     8461 taatggaacc taacgctgtc ggtgccatca tacagccggc aataaacgcc tgataaccaa
     8521 atcctacctg taacatcaat ggcataagga acggtacact accggtcccc agacgggttg
     8581 caatattgcc tacgataccg atcgagaaag tgcgggtttt aaataaatct aatgaaatta
     8641 atgggtttgg cgtgtgtcgc gcatggagaa tatagagaag cagtaacccg atgctggtga
     8701 caattaccgt caaggcaatc cagctggcga caatcttttc cccgaatagc tctattccgc
     8761 ttgagaagag aacaaggctg aggccaaaca gcaaaaagcc agtgatatcg aatctgcgtc
     8821 gtgcggtggt gaaattgggc atatgtttgc gcgcgtaaag aaggcccgca atacctatgg
     8881 ggatattgat taaaaatatc cagtgccagg ttgcccaggt gaccagcacg ccgccaagaa
     8941 cggggcctaa aattggcccc accagacccg gcatggcgac aaaattcaat acaggaagaa
     9001 gttcattacg aggataagca cgcagtaagg ccagccgagc aacaggcatc atcattgcgc
     9061 cgcctatccc ctgaataacc cggaagacaa ccagctgtgg tagcgaatta gaaagtgcgc
     9121 aggccagaga acccaacgtg aacagactca cggcaagggt aaaaatgcga cgcgtaccga
     9181 agcgatcggc tagccatccg cttaccggaa taaacatcgc caccgtcagc gtataactga
     9241 tgatggctga ttgcatcgcg agaggagaac gattaaggct atgagcgatt gcgggtaagg
     9301 cggtattcag aatagtggca tcaagtgcct gcatgaagaa ggccatcgcc gcgatccacg
     9361 gcaaacccgc catactacgc ttctttttat cgctcattca atgtcctgtt atcgggttat
     9421 cacttatcag gtgagcgtag cagcgcctga caagttttaa atgccgcgtc gccatcgctt
     9481 tggataatcg catcgacaat cgcctggtgc agatccagct ttatcactgt gtcgctggta
     9541 attgacgtga agtaagtgtg ataaaccgaa tggaatagcg aggcgaatga ggtcaaaaac
     9601 ggattggcgc tcatttcata gatatgctca tgccaggcca tatcgacttc gatccagcgt
     9661 tcacggcgaa agttcttttt taatgccgcc atttcggcca ttaacgtatt gagatgcgcc
     9721 ttctgttccg cggtgccaac cgttgctgcc agtaggcagg cttgcggctc cagacagata
     9781 cgcataacca gaaagtgatc gatgacctga tgaaagttct cttctgtcat ccaccaggta
     9841 agcaattcct gatcaagaaa attccagttt gattgtggca tgacccgggt accaattcgc
     9901 ggtcgcggta aaaccatccc ttttgccgtt aacgttttga ccgcttcgcg taccgctgta
     9961 cgactcactc caaattgctc gcccagctca atctcaccag gcaaaatggt gccgggttca
    10021 tattcacctt ttaagatgcg ttgcgccagc ttctcagcca gaacatacga aaggtttttc
    10081 tgtgcagcta actgttgtgc gcttaaaggc attactaatc ttcctttttc tttttattcc
    10141 tccttagtat gccaccagga agtgtgatta cggttgcaaa aacggcaaat tgcttgtttt
    10201 atggcacatt aacggggctt ttgctgaaaa agtgcgcggt cagaaaatta ttttaaattt
    10261 cctcttgtca ggccggaata actccctata atgcgccacc actgacacgg aacaacggca
    10321 aacacgccgc cgggtcagcg gggttctcct gagaattccg acagagaaag caaaaataaa
    10381 tgcttgactc tgtagcggga aaacgtatta tgcacacccc gcgc
//
LOCUS       DAJVSY010000146        10370 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.148, whole genome shotgun sequence.
ACCESSION   DAJVSY010000146 DAJVSY010000000
VERSION     DAJVSY010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10370
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.148"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(37..1032)
                     /gene="gapA"
                     /locus_tag="OQQ19_003330"
     CDS             complement(37..1032)
                     /gene="gapA"
                     /locus_tag="OQQ19_003330"
                     /EC_number="1.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006322611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HCS1804836.1"
                     /translation="MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYM
                     LKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLT
                     DETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAK
                     VINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKV
                     LPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTE
                     DDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK"
     gene            1374..1787
                     /gene="msrB"
                     /locus_tag="OQQ19_003331"
     CDS             1374..1787
                     /gene="msrB"
                     /locus_tag="OQQ19_003331"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HCS1804837.1"
                     /translation="MANKPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVY
                     HCLICDAPLFHSETKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHL
                     GHVFPDGPQPTGERYCVNSASLRFTDGENGEEING"
     gene            1829..2101
                     /locus_tag="OQQ19_003332"
     CDS             1829..2101
                     /locus_tag="OQQ19_003332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707337.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeaC family protein"
                     /protein_id="HCS1804838.1"
                     /translation="MNLDDIINSMTPEVYQRLSTAVELGKWPDGVALTEEQKENCLQL
                     VMLWQARHNTEAQHMTIDTNGQMVMKSKQQLKEDFGISAKPIAMFK"
     gene            complement(2262..2903)
                     /gene="pncA"
                     /locus_tag="OQQ19_003333"
     CDS             complement(2262..2903)
                     /gene="pncA"
                     /locus_tag="OQQ19_003333"
                     /EC_number="3.5.1.-"
                     /EC_number="3.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310502.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nicotinamidase/pyrazinamidase"
                     /protein_id="HCS1804839.1"
                     /translation="MPHRALLLVDLQNDFCAGGALAVPEGDSTVEVANRLIDWCQSRG
                     EAVIASQDWHPANHGSFASQHGVEPYTPGQLDGLPQTFWPDHCVQNSEGAQLHPLLNQ
                     KAIAAVFHKGENPLVDSYSAFFDNGRRQKTSLDDWLRDHEIDELIVMGLATDYCVKFT
                     VLDALQLGYKVNVITDGCRGVNIQPQDSAHAFMEMSAAGATLYTLADWEETQG"
     gene            complement(2914..3930)
                     /gene="ansA"
                     /locus_tag="OQQ19_003334"
     CDS             complement(2914..3930)
                     /gene="ansA"
                     /locus_tag="OQQ19_003334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HCS1804840.1"
                     /translation="MQKKSIYVAYTGGTIGMQRSEQGYIPVSGHLQRQLALMPEFHRP
                     EMPDFTIHEYTPLMDSSDMTPDDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALS
                     FMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNR
                     TTKAHADGFDAFASPNLPPLLEAGIHIRRLNTPPAPHGEGELIVHPITPQPIGVVTIY
                     PGISADVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLTQCMSG
                     KVNMGGYATGNALAHAGVIGGADMTVEATLTKLHYLLSQELDTETIRKAMSQNLRGEL
                     TPDD"
     gene            complement(4097..5953)
                     /gene="sppA"
                     /locus_tag="OQQ19_003335"
     CDS             complement(4097..5953)
                     /gene="sppA"
                     /locus_tag="OQQ19_003335"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707347.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HCS1804841.1"
                     /translation="MRTLWRFIAGFFKWTWRLLNFVREMVLNLFFIFLVLVGVGIWMQ
                     VSGGDSKETASRGALLLDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVN
                     TIRQAKDDHNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQY
                     YLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRD
                     DMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPSAQGLLEGLTKTGGDTAKYA
                     LENKLVDALASSAEIEKALTKEFGWSKTDKNYRAISYYDYALKTPADTGDSIGVVFAN
                     GAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAA
                     RAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGV
                     HTDGVSTSPLADVSITRALPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQ
                     GHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKVKQWHLEYYVDEPTFFDKVMDNMSG
                     SVRAMLPDAFQAMLPAPLASVASTVKSESDKLAAFNDPQNRYAFCLTCANVR"
     gene            6114..6665
                     /locus_tag="OQQ19_003336"
     CDS             6114..6665
                     /locus_tag="OQQ19_003336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H nitroreductase"
                     /protein_id="HCS1804842.1"
                     /translation="MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQP
                     WHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKV
                     PRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYL
                     GTPQLKASTSINVPDPTPFVTYF"
     gene            6782..7825
                     /gene="selD"
                     /locus_tag="OQQ19_003337"
     CDS             6782..7825
                     /gene="selD"
                     /locus_tag="OQQ19_003337"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HCS1804843.1"
                     /translation="MSENSIRLTQYSHGAGCGCKISPKVLETILHSEQAKFVDPNLLV
                     GNETRDDAAVYDLGNGTSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMA
                     IAILGWPINKLSPEIAREVTEGGRYACRQAGIALAGGHSIDAPEPIFGLAVTGIVPTE
                     RVKKNSTAQAGCKLFLTKPLGIGVLTTAEKKSLLKPEHQGLATEVMCRMNIAGASFAN
                     IEGVKAMTDVTGFGLLGHLSEMCQGAGVQARVDYDAIPKLPGVEEYIKLGAVPGGTER
                     NFASYGHLMGEMPREVRDLLCDPQTSGGLLLAVMPEAENEVKATAAEFGIELTAIGEL
                     VPARGGRAMVEIR"
     gene            7830..9791
                     /gene="topB"
                     /locus_tag="OQQ19_003338"
     CDS             7830..9791
                     /gene="topB"
                     /locus_tag="OQQ19_003338"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HCS1804844.1"
                     /translation="MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGH
                     LLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAG
                     DPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCV
                     SALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVA
                     KDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIV
                     TSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCR
                     YLPEEHFAGRHAVMNAISVHAPDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSA
                     INLTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLL
                     GSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQ
                     DKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPEMAT
                     RPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAPGSGG
                     SADKKKAAPRKRSAKKSPPADEVGSGAIA"
     gene            9918..>10370
                     /locus_tag="OQQ19_003339"
     CDS             9918..>10370
                     /locus_tag="OQQ19_003339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416276.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804845.1"
                     /translation="MKKVLLQNHPGSEKYSFNGWEIFNSNFERMIKENKAMLLCKWGF
                     YLTCVVAVMFVFAAITSNGLNERGLITAGCSFLYLLIMMGLIVRAGFKAKKEQLHYYQ
                     AKGIEPLSIEKLQALQLITPYRFYHKQWSETLEFWPRKPEPGKDTFQYH"
BASE COUNT         2611 a         2534 c         2736 g         2489 t
ORIGIN      
        1 gaagtcgctc tttttagatc acagtttcat ctcaacttat ttggagatgt gagcgatcag
       61 gtccagaact ttgttggagt aaccggtttc gttgtcgtac caggatacca gtttcacgaa
      121 gttgtcgttc agagcgatac cagctttagc atcgaacacg gaagtgcaaa cttcgccgtt
      181 gaaatcggta gatactacgt catcttcggt gtagcccaga acgcctttca tttcgccttc
      241 agcagcggct ttaacggcag ctttgatctg ctcgtaagtt gcagcttttt ccagacgaac
      301 ggtcaggtca actacggata cgttcggggt cggaacgcgg aacgccatac cagtcagttt
      361 gccattcagt tctggcagta ctttacctac agctttagca gcaccggtag aggacgggat
      421 gatgttctgg gaagcgccgc ggccgccgcg ccagtctttg tgagacgggc catcaacggt
      481 tttctgagta gcggtagtag cgtgaacggt ggtcatcaga ccttcgatga tgccgaagtt
      541 atcgttgata actttagcca gcggagccag gcagttggtg gtgcaggaag cgttggaaac
      601 gatgtcctgg ccagcatatt tgtcgaagtt agcgccttta acgaacatcg gagtgttgtc
      661 tttagacgga ccagtcataa ccactttctt cgcaccagcg gtgatgtgtt tacgagcagt
      721 ttcgtcagtc aggaacagac cagttgcttc agcgacaacg tcaacaccaa cttcgtccca
      781 tttcaggtta gccggatcac gttcagcggt aacacggatt tttttaccgt taacgatcag
      841 atgaccgtct ttcacttcaa cggtaccgtc gaaacggccg tgagtggagt catatttcag
      901 catgtatgcc atgtaatcag cgtctaacag gtcgttgatt gcaacgatct cgatgtcaga
      961 acgtttctga gcagcacgga aaacaatgcg accgatacgg ccaaaaccgt tgatacctac
     1021 tttgatagtc atatattcca ccagctattt gttagtgaat aaaaggttgc ctgtaaaatt
     1081 acaaaaacct tacgcagcgt caagcggaat cgtgtcaatc attgcgacaa atcaatcctg
     1141 tgcctaagca ttatgcgact gactcgcctc actcttcctt tgggcttgaa accacatggg
     1201 gtcggcgccc cgaattttaa agggcaatta cgataaaaat gtgattttca tcacgattta
     1261 ggtgcagcca tttcgtcgag atcaagttta ggacaaaatt ttgccagttg gtgttaatgt
     1321 tttgttagaa tcagtcacgt aatgtgagca cgattaaagt gagatgtgag caaatggcta
     1381 ataaaccttc ggcagaagaa ctgaaaaaaa atttgtccga gatgcagttt tacgtgacgc
     1441 agaatcatgg gacagagccg ccatttacgg ggcgtttact gcataacaag cgtgacggcg
     1501 tatatcactg tttgatctgc gatgccccgc tgtttcattc cgaaaccaag tatgattccg
     1561 gctgtggctg gcccagtttc tacgaaccgg tgagtgaaga atccattcgt tatatcaaag
     1621 acttgtcaca tggaatgcag cgcatagaaa ttcgttgcgg taactgtgat gcccatctgg
     1681 ggcatgtctt tcccgacggg ccgcaaccaa caggcgaacg ttattgtgtt aactctgctt
     1741 ctttacgctt cactgatggc gaaaacggcg aagaaatcaa cggttgaaaa aacgattcag
     1801 caacttattc cacaggagcg gaaaaattat gaatcttgat gacattatca acagcatgac
     1861 gcctgaggta taccagcgtt tgtcgaccgc cgttgaactg gggaaatggc ctgatggcgt
     1921 tgcgttgacc gaggaacaaa aagagaattg cctgcaactg gtgatgctgt ggcaagcccg
     1981 ccataatacc gaagcacagc atatgacaat tgacacaaat ggtcagatgg tcatgaagag
     2041 caaacagcag ttaaaagaag attttggtat ctcagcaaag cctattgcta tgtttaagtg
     2101 aatgagttat ctagtattta agcctgttat taagggaggg caaatatact tgttcggacg
     2161 tcgtgtttta gctgcaagta ggttaaatgc aacactgaca agtattatct ggcctacaat
     2221 gtcattgagg aaatgtaggc cagagatgaa ttcaactaat attacccctg tgtctcttcc
     2281 cagtctgcca gcgtatatag cgttgcccca gctgctgaca tctccataaa cgcgtgtgca
     2341 ctgtcctggg gctggatatt cacgccacga caaccatcgg taatcacgtt caccttataa
     2401 cctaactgta acgcgtccag cacggtaaac ttcacgcaat agtcagtagc caggcccata
     2461 acgatcaatt catcgatttc atgatcgcgt aaccagtcat cgagagaggt tttctgccga
     2521 cggccgttat caaaaaaggc actgtaactg tcaactaaag gattttcgcc tttatggaac
     2581 accgctgcga tcgctttttg gttcagtaac ggatgtaatt gtgcgccttc actgttctgc
     2641 acacagtgat ctggccagaa ggtttgtggc aaaccgtcga gttggcctgg cgtataaggc
     2701 tctacaccgt gctgactggc aaaactgccg tgattcgccg gatgccagtc ctggctggcg
     2761 ataaccgctt ctccgcgcga ctggcaccag tcaataaggc ggttagcaac ctccaccgta
     2821 ctgtcacctt ccggtacggc gagcgcgcca ccagcacaga aatcattttg taaatcgacc
     2881 agtaacaggg cgcgatgggg cattgcagtc tccttaatca tccggcgtca gttcgccgcg
     2941 caggttttgg ctcatggcct tgcgaatggt ttcagtatcc agttcctggc tcagcaggta
     3001 atgcagtttg gttagcgtgg cttctacagt catatctgca ccgccaataa cgccggcatg
     3061 ggcgagggcg ttaccggtgg cataaccacc catattcact ttaccggaca tacattgtgt
     3121 caggttgacc accacaatac cgcgatcgct ggcttcttgt aattcctgca ggaaggcttt
     3181 gttttgtggc gcattaccca cgccatagga gcgcagaatc aatgctttca ctggttggcg
     3241 cagaaaattg cgcacgacat cagcagaaat ccccggataa atcgtcacta cgccaattgg
     3301 ttgtggcgtg attggatgaa cgattaattc cccttcaccg tgcggggcgg gtggcgtatt
     3361 caaacgacga atatggatac cagcttccag taacggagga aggtttggag aggcaaacgc
     3421 atcaaaacca tcggcatggg ctttggtagt gcggttgccg cgatacaatc ggttattgaa
     3481 aaagagcgtt acttcgttga tcggataatt cgccgcaacg tacaacgcat tcagcagatt
     3541 aatttgtccg tcagagcgta actcagccag cgggatttgt gaccctgtca caatgaccgg
     3601 tttaccgaga ttctcgagca tgaacgacag cgcagaggcg gtatacgcca tcgtgtcggt
     3661 accgtgtaga atgacaaaac catcatagtc gtcatagtgc gctttaatat cttcagcaat
     3721 atgctgccag tcatccggcg tcatatcaga agaatccatc aacggcgtat attcatgaat
     3781 ggtgaaatct ggcatctccg ggcgatggaa ttccggcatc agcgccagtt ggcgttgtag
     3841 atgacctgac accggaatat aaccctgctc ggaacgctgc atcccgatgg tcccgcccgt
     3901 gtaggcgacg taaattgatt tcttttgcat gatattgata tgaatgatat cgaaagagca
     3961 aaagtatata cgtgaggcag gaggagcgca cctgatacta tgcggataag gaaatatggg
     4021 gcgagacagc gggaagagga ttcgtcgagg taaaaaataa tgtggccgac gatctgtcgg
     4081 ccactcagta caagacttaa cgcacgttgg cgcaggtcag gcaaaacgca taacggtttt
     4141 gtgggtcgtt aaacgcggcc agcttgtcgc tttcactttt aacggtagag gctaccgagg
     4201 caagcggtgc aggtaacatg gcctggaacg catctggcaa cattgcccgg acagaaccag
     4261 acatgttgtc catcactttg tcgaagaagg tcggttcatc aacgtagtat tccagatgcc
     4321 actgtttcac ttttgcgagc tctgctgctt tggcaaccgc atcatcgaaa tccccgagac
     4381 tatcgaccag cccgttagct tttgcatcct gaccggtcca gacgtggccc tgggcgattt
     4441 tatcaatttg ctccggcgtc gaatgacgcg catcagcaac cagcgtgata aagcgtttat
     4501 agccattctc aatgcttaat tgcatcatct gctgcgcttc cggcggcagt gccctggtga
     4561 tagaaacatc cgccagcggt gaagttgaga caccatcagt atgaacacca atcgaatcca
     4621 gactattttc tacggtggtg atcacgccga agataccgat agaaccggtc agggtgctgg
     4681 ggttagccac aatgtaatta gctggcgtgg aaatccagta accaccagat gccgccatgc
     4741 cgcccatcga tacaaccaca ggcttacccg ctgcccgggc tgctgccagt tcagcgcgaa
     4801 tcacttcaga cgcggtaacg ctgccgcctg ggctattaac acgcaggaca atcgctttca
     4861 ctttcgggtc aaggcgagcg tcgcggattt gtgccgcagt ggtatcaccg ccaacattcc
     4921 cctgagtttc ctcgccatcc ataattgcgc cattagcgaa gacgacaccg atgctgtcac
     4981 cggtatctgc cggcgttttc aatgcgtaat cgtaataact gatggcgcga taatttttat
     5041 cagtcttact ccagccgaac tctttggtca gagctttttc gatttcggca ctcgatgcca
     5101 gtgcatcgac cagcttgttt tccagtgcat atttcgcggt atcgccaccg gttttggtta
     5161 aaccctcaag caacccttgc gcgctaggga atacctgctg agcagggatc tgccggttag
     5221 cggcaacagt attcagatag ttttgccaca gctcaccaat ccagcggctg tcagcttcgc
     5281 gggctgccgg tgacatatca tcacgaataa acggttcaac ggcagattta tacgtaccca
     5341 cgcggaacac atgggtggaa actttcagct tatccagcaa cgatttgtag tacagaccgt
     5401 tggtagcaaa accgtgcaga tcaaccacgc cttgcggtga cagccaaatt ttattggcga
     5461 aactggcgag ataatattgc ccctggctgt agttctcgcc aacggcataa accggtttcc
     5521 cgctgtcacg aaactctttc agggctttgc cgatgtactg catagacggc tggtcgccgc
     5581 ctgcgaagtt tttcagatcc atcacgatac cggtgatatt gtggtcgtcc ttcgcctggc
     5641 gaatggtgtt gacgatatca aacagtgagt tttcctgcag acgatcggaa ctggcaccaa
     5701 gcagctggcg gcttaattta ctaaaccgct gagaactgtc gggtttatcg acgatcacac
     5761 cggaaatgtc cagcagcagt gcgccacgac tggccgtttc tttcgaatca ccaccactga
     5821 cctgcatcca gatccccaca ccaaccagta cgaggaaaat aaagaacagg ttaagtacca
     5881 tttcacggac gaaattcagc agacgccacg tccatttaaa aaatccggca ataaatcgcc
     5941 aaagggttcg catgtattct cccaacttaa ggtcacacct gtcacaggcg caatagatgt
     6001 ggttatcgta atgacccaac cgacacttgt cagcaggaat tgcggactgt gctgtaacaa
     6061 aatccactct cgtgttaatt ttgtgaataa atatcacgac aggagttaat caaatggatg
     6121 cactcgaact attgatcaat cgccgtagcg cctcccgcct ggctgaaccc gcgccaacgg
     6181 gtgaacaact gcaaaacatc ctgcgtgcgg gtatgcgtgc gccggaccat aagtccatgc
     6241 aaccgtggca tttttttgtg attgaagggg aagggcgcga gcgtttcagc gccgtactgg
     6301 aacagggggc gattgctgcc ggtagtgatg acaaagctat cgacaaagcc cgtaatgcgc
     6361 cgttccgcgc accgctcatc atcacggtgg tggcgaaatg cgaagaaaat cataaagtcc
     6421 cgcgatggga acaggaaatg tctgccggat gcgcggtcat ggcgatgcaa atggcagccg
     6481 ttgcccaggg atttggcggc atctggcgca gtggcgcatt aactgaaagt ccggtagtgc
     6541 gtgaagcatt cggttgccgt gagcaggata aaattgtcgg ttttctctac ctcggcacgc
     6601 cgcagttgaa agcatctacg tcgattaacg tcccggaccc gacgccgttt gtaacttatt
     6661 tctgataatt gtcgcgaaac tgtctggatt gtgagcaaag gcgcaggaat tcagacactc
     6721 tcacttatca cttcacggaa tgagggttac catacccgga ttgcattgac aggagatgtc
     6781 catgagcgag aactcgattc gtttgaccca atacagccac ggagctggtt gcggctgtaa
     6841 aatttcccca aaagtgttgg aaaccatcct gcacagtgag caggcgaagt ttgttgatcc
     6901 gaatttgctt gtgggtaatg agacccgcga cgatgcggcg gtgtacgatc tgggcaatgg
     6961 caccagcgtt atcagtacca ccgacttctt tatgccgatc gttgataatc ctttcgattt
     7021 tggccgcatt gcggcgacta acgccatcag cgatatcttc gcgatggggg gcaaaccgat
     7081 tatggcgatt gcgatcctcg gctggccgat taacaaactt tccccggaaa ttgcccgcga
     7141 agtaaccgaa ggtggacgct atgcatgccg tcaggcgggt attgcgctgg ctggcggtca
     7201 ctccatcgat gcgccggagc cgatttttgg tctggcggta acggggatcg taccgaccga
     7261 gcgggtgaag aaaaacagca ccgcacaagc cggatgcaaa ctgttcctga cgaaaccgct
     7321 ggggatcggc gttcttacca cggctgagaa aaaatcactg ctgaaaccag aacatcaggg
     7381 actagcgacg gaagtgatgt gccggatgaa catcgcaggc gcgtcctttg ccaacatcga
     7441 aggcgtaaaa gcgatgaccg acgttacggg ctttggtctg ctgggccatt tgagcgaaat
     7501 gtgtcagggc gcaggtgtgc aggcgcgcgt tgactatgac gcgatcccaa aattgccggg
     7561 ggttgaagag tacattaagt tgggcgcagt gcctggcggc accgaacgta actttgccag
     7621 ctacggtcat ctgatgggtg aaatgccgcg tgaagtgcgc gatttgctgt gcgatccgca
     7681 aacttctggc ggtttgctgc tggcggtcat gccggaagca gaaaatgagg tcaaagctac
     7741 agccgccgag tttggcattg aactgacggc aattggcgaa ctggtgccag cgcgcggcgg
     7801 tcgtgccatg gttgagattc gttaattcaa tgcggttgtt tattgccgaa aaaccgagtc
     7861 tggcgcgcgc cattgctgat gtcctgccca aaccgcaccg gaaaggcgat ggctttatcg
     7921 agtgcggtaa tggtcaggtg gtgacctggt gtatcggtca cctgcttgag caggcgcagc
     7981 cagacgccta cgacagccgc tatgcgcgct ggaatcttgc ggatttgccg attgtcccgg
     8041 aaaagtggca attacagccc cgaccctccg tgaccaaaca acttaacgtc atcaaacgct
     8101 tcctgcatga agccagcgaa atcgttcacg ccggggaccc ggatcgtgaa gggcaactgc
     8161 tggtggatga agtgctggac tatctgcaac tggcaccgga aaagcgccag caggtgcagc
     8221 gttgcttgat aaacgacctg aacccgcagg cggttgagcg ggcgatcgac cgtcttcggt
     8281 ccaacagtga gtttgtgcca ttgtgcgttt ctgcgctggc gcgagcgcgt gccgactggc
     8341 tgtacggcat caatatgacc cgtgcgtata ccattctcgg tcgcaatgcc ggttatcagg
     8401 gcgtactttc cgtgggacgc gtgcagacac ccgtgctcgg gctggtggtg cgccgcgatg
     8461 aagagattga aaacttcgtg gcgaaagact tctttgaagt caaagcacat atcgtgacac
     8521 ctgccgatga gcggtttacc gctatctggc aaccgagcga agcgtgtgaa ccgtaccagg
     8581 atgaagaagg gcgcttgtta catcgtccac tggcggagca tgtggttaac cgcattagtg
     8641 gtcaaccagc aattgtcacc agctataacg ataaacggga atcagaatcc gcgccgctgc
     8701 ctttttcgct ttcggcgttg cagattgaag cggcaaaacg ctttggtctg agcgcgcaga
     8761 acgtgcttga tatctgccag aagctgtacg aaacgcacaa gctaatcact tatccgcgtt
     8821 ccgattgtcg ctatttgcca gaagaacatt ttgccggacg ccacgcggtg atgaatgcca
     8881 tcagcgttca tgcaccagat ctgttgccgc aaccagtggt agatccagat atacgcaacc
     8941 gctgttggga tgacaaaaag gtcgatgcac accacgccat catcccgacc gcacggagtt
     9001 ctgcgatcaa cctgacggag aacgaagcga aggtctataa cctgattgcc cgtcagtact
     9061 tgatgcagtt ctgcccggat gcggtgttcc gcaagtgtgt tatcgaactg gacattgcca
     9121 aaggcaaatt tgtcgctaaa gcgcgttttc ttgctgaagc aggctggcgc acgctgttag
     9181 gcagcaaaga gcgcgatgaa gaaaacgacg gtacgccatt gcctgtggtg gcgaaaggcg
     9241 atgagttgct gtgtgaaaaa ggtgaagtgg tagagcggca aacccagccg ccgcgccatt
     9301 ttaccgatgc aacactgctt tcggcgatga ccgggatcgc gcgctttgtg caggacaaag
     9361 atctgaaaaa gatccttcgt gcgaccgatg gtctggggac agaagcaacc cgtgccggga
     9421 ttattgaact gctgttcaag cgtggttttc tgaccaaaaa agggcgctat atccactcta
     9481 ccgacgccgg aaaagcgtta ttccattcgc tgccagaaat ggcgacgcga ccggacatga
     9541 ccgcgcactg ggaatcggtg ctgacgcaaa tcagcgaaaa gcagtgtcgc tatcaggact
     9601 ttatgcagcc gctggtgggg acgctatatc agcttattga tcaagccaaa cgtacgccgg
     9661 tgcggcagtt tcgcggcatt gtggctccgg gcagtggtgg cagtgctgat aagaaaaagg
     9721 ctgcaccgcg taaacgtagt gcgaaaaaaa gtccgccagc agatgaagtc ggaagcgggg
     9781 cgatagcgta agcgagtgaa tctttcgtgc tattcgagtc atattctgaa atatccagcg
     9841 aatcaagaaa attcgttgga tatttttttg catggataaa attatcgcct ctaaagtatg
     9901 taataacagg gaatgtgatg aaaaaagttt tattacaaaa ccatcctggg agcgagaagt
     9961 attcttttaa tggctgggaa atatttaata gtaattttga acggatgatt aaagaaaata
    10021 aggccatgct gctttgtaag tgggggtttt atttaacatg tgttgtcgct gtaatgtttg
    10081 tgttcgcagc gataacatcc aacggtttga atgaaagagg cctgattacc gcgggatgct
    10141 cttttcttta tctattaatt atgatggggc ttattgttcg ggccggtttt aaagcaaaaa
    10201 aagaacaact gcattattat caggctaaag gtattgagcc gctcagtatc gagaagttac
    10261 aggcgctaca attgatcaca ccttatcgat tctatcataa gcaatggtct gaaacgctgg
    10321 agttctggcc gcgaaagcct gaacctggca aagatacctt ccaatatcat
//
LOCUS       DAJVSY010000147        10330 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.149, whole genome shotgun sequence.
ACCESSION   DAJVSY010000147 DAJVSY010000000
VERSION     DAJVSY010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10330
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.149"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            121..987
                     /gene="folD"
                     /locus_tag="OQQ19_003340"
     CDS             121..987
                     /gene="folD"
                     /locus_tag="OQQ19_003340"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HCS1804846.1"
                     /translation="MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSN
                     PASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDALNADNTIDGILVQLPLP
                     AGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGL
                     NAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPG
                     DWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTL
                     QACVEYHDPQGE"
     gene            989..1201
                     /gene="ybcJ"
                     /locus_tag="OQQ19_003341"
     CDS             989..1201
                     /gene="ybcJ"
                     /locus_tag="OQQ19_003341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308617.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein YbcJ"
                     /protein_id="HCS1804847.1"
                     /translation="MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGA
                     VETRKRCKIVAGQTVSFAGHSVQVVA"
     gene            1309..1830
                     /locus_tag="OQQ19_003342"
     CDS             1309..1830
                     /locus_tag="OQQ19_003342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS1804848.1"
                     /translation="MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLS
                     FKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSL
                     LDSVTTGGKGVGWLWPWSDERFFAPWQMIKVAPFALSRYTTPYGHQVIISELMWVWLP
                     GMVLMGMLWWRRR"
     gene            complement(1866..3251)
                     /gene="cysS"
                     /locus_tag="OQQ19_003343"
     CDS             complement(1866..3251)
                     /gene="cysS"
                     /locus_tag="OQQ19_003343"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HCS1804849.1"
                     /translation="MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTF
                     VAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDA
                     LNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDL
                     DQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLG
                     NHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFT
                     VRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQTRAALERLYTALRGTDKTVAPAG
                     GEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLG
                     LLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLE
                     DGPQGTTWRRK"
     gene            3425..3919
                     /gene="ppiB"
                     /locus_tag="OQQ19_003344"
     CDS             3425..3919
                     /gene="ppiB"
                     /locus_tag="OQQ19_003344"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017465360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase B"
                     /protein_id="HCS1804850.1"
                     /translation="MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRV
                     INGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINV
                     VDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESV
                     TVSE"
     gene            3922..4644
                     /gene="lpxH"
                     /locus_tag="OQQ19_003345"
     CDS             3922..4644
                     /gene="lpxH"
                     /locus_tag="OQQ19_003345"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HCS1804851.1"
                     /translation="MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFE
                     AWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKV
                     LELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQMLFLALPLFVRKRIAARMRANS
                     KEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGA
                     WHTEGSMVKVTADDVELIHFPF"
     gene            4762..5271
                     /gene="purE"
                     /locus_tag="OQQ19_003346"
     CDS             4762..5271
                     /gene="purE"
                     /locus_tag="OQQ19_003346"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HCS1804852.1"
                     /translation="MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSA
                     HRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVD
                     SLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVL
                     ENPDPRGAA"
     gene            5268..6335
                     /gene="purK"
                     /locus_tag="OQQ19_003347"
     CDS             5268..6335
                     /gene="purK"
                     /locus_tag="OQQ19_003347"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706400.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HCS1804853.1"
                     /translation="MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQS
                     VITAEIERWPETVLTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAD
                     RSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSG
                     EVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELG
                     YMGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVV
                     NNPSVMINLIGSDANYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEA
                     LIPLLPPEYASGVIWAQSKFS"
     gene            complement(6472..7363)
                     /locus_tag="OQQ19_003348"
                     /pseudo
     CDS             complement(6472..7363)
                     /locus_tag="OQQ19_003348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706399.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
     gene            complement(7360..8175)
                     /locus_tag="OQQ19_003349"
     CDS             complement(7360..8175)
                     /locus_tag="OQQ19_003349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2877 domain-containing protein"
                     /protein_id="HCS1804854.1"
                     /translation="MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHR
                     QGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPP
                     SHPQPLAAAWMQRAEETGLFGPLAMAASDPLTAELRQFRHCFQAALNGVKTDWRHWLG
                     KGPGLTPSHDDTLSGMLLAAWYYGALDARAGRPFFACSDNLQLVTTAVSVSYLRYAAQ
                     GYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP"
     gene            complement(8186..9445)
                     /locus_tag="OQQ19_003350"
     CDS             complement(8186..9445)
                     /locus_tag="OQQ19_003350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009029994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1116 domain-containing protein"
                     /protein_id="HCS1804855.1"
                     /translation="MFTSVAQANAAVIEQIRRARPHWLDVQPAFSLISELNEGKTLLH
                     AGPPMRWQEMTGPMKGACVGGCLFEGWAKDEAQALAMLEQGEVNFIPCHHVNAVGPMG
                     GITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLS
                     AALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRTLAPQIARLDHDKQHIAEV
                     IDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFT
                     APVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAAR
                     AVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQ
                     IGAGTVRAPLACFEQALEALAESMGIG"
     gene            complement(9455..10330)
                     /gene="fdrA"
                     /locus_tag="OQQ19_003351"
                     /pseudo
     CDS             complement(9455..10330)
                     /gene="fdrA"
                     /locus_tag="OQQ19_003351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415051.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase FdrA"
BASE COUNT         2273 a         2938 c         2773 g         2346 t
ORIGIN      
        1 aaccttcgca agaggtcgct tcacgcgata aatctgaaac gaaacctgac agcgcgcccc
       61 gcttctgaca aaataggcgc atccccttcg acctacgtaa cagatggaat cctctctctg
      121 atggcagcaa agattattga cggtaaaacg attgcgcagc aggtgcgctc tgaagttgct
      181 caaaaagttc aggcgcgtat tgcagccgga ctgcgggcac caggactggc cgttgtgctg
      241 gtgggtagta accctgcatc gcaaatttat gtcgcaagca aacgcaaggc ttgtgaagaa
      301 gtcgggttcg tctcccgctc ttatgacctc ccggaaacca ccagcgaagc ggagctgttg
      361 gagcttatcg atgcgctgaa tgccgacaac accatcgatg gcattctggt tcaactgccg
      421 ttaccggcgg gtattgataa cgtcaaagtg ctggaacgta ttcatccgga caaagacgtg
      481 gacggtttcc atccttataa cgtcggtcgt ctgtgccagc gcgcgccgcg tctgcgtccc
      541 tgcaccccgc gcggtatcgt cacgctgctt gagcgttaca acattgatac cttcggcctt
      601 aacgccgtgg tgattggcgc atcgaatatc gtcggtcgtc caatgagcat ggaactgttg
      661 ctcgcaggtt gcaccactac cgtgactcac cgtttcacta aaaatctgcg tcaccacgta
      721 gaaaatgccg atctgttgat cgttgccgtc ggcaagccgg gctttattcc tggtgactgg
      781 atcaaagaag gcgcaattgt gattgatgtc ggcatcaacc gtctggaaaa tggcaaagtt
      841 gtgggcgacg tcgtgtttga agacgcggct aaacgcgcct catacattac gcctgttccg
      901 ggcggcgttg gcccgatgac ggttgccacg ctgattgaaa acacgcttca ggcgtgcgtt
      961 gaatatcatg atccacaggg tgagtaacat ggcgacattt tctttaggta aacatccgca
     1021 cgttgagctg tgcgatttgc tgaaactgga aggctggagc gaaagcggcg cgcaggcgaa
     1081 aatcgcgatt gccgaaggcc aggtgaaagt cgacggtgcg gttgaaacgc gcaaacgctg
     1141 caaaatcgtc gccggtcaga cagtgagttt tgcaggtcac agcgtacagg ttgttgcctg
     1201 atccctttcc cggcctgtat caacaggccg gttctctttt cagacttttg ccctctacgc
     1261 cccgttcatc catgctgata gcatcgacat tttgccgaag cgaccatcat gccaaccgtt
     1321 attacgcacg ccgccgttcc cctatgcatt ggtttagggt tgggttcgaa agtcatccct
     1381 ccgcgtctgt tatttgccgg aatcatcctg gcgatgctgc ccgacgccga cgtattgtcg
     1441 tttaaatttg gcgttgctta cggcaatgtt tttggtcatc gcgggtttac ccattcgctg
     1501 gtgtttgcgt ttgttgtccc gctgttatgt gtgctgattg gacgccgatg gttcagggct
     1561 gggcttattc gctgctggct gtttttaacc gtctcgttgc tatcgcacag cttgctggat
     1621 tcggtaacca ctggcggtaa gggcgttggc tggctgtggc cgtggtcaga tgaacgcttt
     1681 ttcgctccct ggcagatgat taaagtcgcg ccgtttgcat tgtctcgtta caccacgccg
     1741 tacgggcatc aggtgataat ttctgaattg atgtgggtgt ggttgccggg gatggtgctt
     1801 atgggaatgt tgtggtggcg caggcgataa ccggatgcga aaactcgcat ccggcaacag
     1861 cgcaattact tacgacgcca ggtggtccct tgcgggccat cttccagcac gatccccatc
     1921 tcgttaagac ggtcacgcgc cgcatctgcc gccgcccagt ctttcgcttt acgggcatcc
     1981 agacgctgtt gaattaacgc ttcaatctca gccacttcgc tgtcgtctgc ctgcgcgccg
     2041 ctttgcagga acgcttccgg ttcttgctcc agcaggccca atacagcgga aagtttacgc
     2101 aggtgagatg ccattgcatt cgccgctgcc atatcttctg ctttcagacg gtttacttca
     2161 cgcgccatat caaacagtac ggaataggct tccggggtgt tgaaatcgtc gtccatcgct
     2221 tcaataaagc gcgcttcaaa cgcttcgcca ccggcaggcg caacggtttt atctgtgccg
     2281 cgcagcgcag tgtagagacg ctccagcgcc gcacgcgtct gcttcaggtt ctcttcgctg
     2341 tagttcaact ggctgcgata gtggcccgac atcaggaagt aacgcacggt ttccgcgtcg
     2401 tagtatttca gcacatcgcg cacggtaaag aagttaccca gcgatttgga catcttctcg
     2461 cggtcaacca tcaccattcc ggagtgcatc cagtagttca catactgacc atcatgggca
     2521 caggtggact gcgcgatttc gttctcgtgg tgcgggaaca tcaggtctga accgccgccg
     2581 tggatatcaa agtggttacc cagctgcttg cagttcatgg ccgaacattc aatgtgccag
     2641 ccaggacgac ccgcgcccca cggagacggc cagctcggtt cgccctcttt cgacatcttc
     2701 cacagaacga agtccatcgg gttgcgtttg tcatcaacca cgtcaacgcg cgcgccagcc
     2761 tgcagctggt cgagatcctg acgcgacagc acgccataag tcggatcggt cgggacgtcg
     2821 aacatcacgt cgccgttgtc agccacataa gcgtgacctt tggcgatcag ttgttcagtg
     2881 agttcaataa tttctgcgat atggtgcgtc gcgcgcggct ccatatccgg gcgcagaatg
     2941 ttcaaagcat caaaatcttt gtgcatttcg gcgatcatgc gatccaccag cgccacaaag
     3001 ctttcgccat tttcattggc gcgtttgatg attttgtcgt cgatatcggt aatgttgcgc
     3061 acatacttca gcttatagcc gaggaaacgc agatagcgcg caaccacgtc aaaagcaaca
     3121 aaggtacgcc cgtgaccgat atgacagaga tcgtaaacgg tgattccaca cacgtacatg
     3181 ccgacttccc cggcgtgaat aggcttaaat tcctcttttt ggcgtgtcag agtattgaag
     3241 atttttagca tcgaagattc cgtttagaca tgtgtgggta attgagttgc gtataatacc
     3301 catatttccc gcgcgaatca gcatacattg cgtgatgatc cgatcgtgcg gttatgctat
     3361 aacaccaccc tatatatgac ccgaaccggg ttgaagcacc aatcaaacgg aacaggatgc
     3421 aaaaatggtt actttccaca ccaatcacgg cgatattgtc atcaaaactt ttgacgataa
     3481 agcacctgaa acagttaaaa acttcctgga ctactgccgc gaaggttttt acaacaacac
     3541 cattttccac cgtgttatca acggctttat gattcagggc ggcggttttg aaccgggcat
     3601 gaaacaaaaa gccaccaaag aaccgatcaa aaacgaagcc aacaacggtc tgaaaaatac
     3661 ccgtggtacg ctggcaatgg cccgtactca ggctccgcac tctgcaactg cacagttctt
     3721 catcaacgtg gttgataacg acttcctgaa cttctctggc gaaagcctgc aaggttgggg
     3781 ctactgcgtg tttgctgaag tggttgaagg catggacgtg gtagacaaaa tcaaaggtgt
     3841 tgcaaccggt cgtagcggta tgcaccagga cgtgccaaaa gaagacgtta tcattgaaag
     3901 cgtgaccgtt agcgagtaat cgtggcgaca ctctttattg cagatcttca tctctgcgtg
     3961 gaagaaccgg cgatcaccgc cggttttctg cgttttttag cgggggaagc tcgcaaggcc
     4021 gacgcgctgt atattcttgg cgatctgttt gaagcgtgga ttggcgacga cgatcccaat
     4081 ccactccatc gccagatggc ggcagcgatc aaagcggtgt ccgattccgg cgttccctgt
     4141 tatttcattc atggcaaccg tgattttctg ctcggcaaac gctttgcccg tgaaagtggc
     4201 atgacgttat tgccggaaga aaaggtgctc gaactttatg gccgccgggt gttgattatg
     4261 catggcgaca cgctgtgcac cgatgacgcg ggttatcagg cttttcgcgc caaagtccac
     4321 aaaccctggc tgcaaatgct attcctcgcc ctgccgttgt ttgtgcgcaa acgcattgcc
     4381 gcgcgaatgc gcgcgaacag caaagaagcc aacagcagta aatcgctggc gatcatggac
     4441 gttaaccaaa acgcagtggt cagtgcgatg gaaaaacatc aggtgcaatg gctgatccac
     4501 gggcataccc atcgcccggc ggtgcatgaa cttatcgcca accagcaacc tgcttttcgc
     4561 gtggtactgg gtgcctggca tacggaaggt tcgatggtga aagtcacggc ggatgacgtt
     4621 gagctgattc attttccgtt ttaaaaaaac cacaactttg ctgatttcac agccacgcaa
     4681 ccgttttcct tgctctcttt ccgtgctatt ctctgtgccc tctaaagccg agagttgtgc
     4741 accacaggag ttttaagacg catgtcttcc cgcaataatc cggcgcgtgt cgccatcgtg
     4801 atggggtcca aaagcgactg ggctaccatg cagttcgccg ccgaaatctt cgaaatcctg
     4861 aatgtcccgc accacgttga agtggtttct gctcaccgca cccccgataa actgttcagc
     4921 ttcgccgaaa gcgccgaaga gaacggttat caggtgatta ttgcgggcgc aggtggcgca
     4981 gcgcacctgc caggcatgat tgccgccaaa acgctggtgc cggtgctggg cgtgccagta
     5041 cagagcgccg cactgagcgg tgtcgatagc ctctactcca tcgtacaaat gccgcgcggc
     5101 attccggtgg gtacgctggc gattggtaaa gctggcgcgg caaacgcggc attactggca
     5161 gcacaaattc tcgcgactca cgataaagag ctacaccagc gtctgaatga ctggcgcaaa
     5221 gcccagaccg acgaagtgct ggaaaatccg gacccgcgag gtgcggcatg aaacaggttt
     5281 gcgtcctcgg taacgggcag ttaggccgta tgctgcgtca ggcaggcgaa ccgttaggca
     5341 ttgctgtctg gccggtcggg ctggacgctg aaccggcggc ggtgcctttt caacaaagcg
     5401 tgattaccgc tgagatcgaa cgctggccgg aaaccgtatt aacccgcgag ctggcgcgtc
     5461 atccggcctt tgtgaaccgc gatgtgttcc cgattattgc tgaccgtctg actcagaagc
     5521 agcttttcga taagctccac ctgccgaccg cgccgtggca gttacttgcc gatcgcagcg
     5581 agtggcctgc ggtgtttgat cgtttaggtg aactggcgat tgttaagcgt cgcactggtg
     5641 gctatgacgg tcgcggtcaa tggcgtttac gcgccaatga aaccgaacag ttaccggcag
     5701 agtgttacgg cgaatgtatt gtcgagcagg gcattaactt ctctggtgaa gtgtcgctgg
     5761 ttggcgcgcg cggctttgat ggcagcaccg tgttttatcc gctgacgcat aacctgcatc
     5821 aggacggtat tttgcgcacc agcgtcgctt ttccgcaggc caacgcacag cagcaggcgc
     5881 aagccgaaga gatgctgtcg gcgattatgc aggagctggg ctatatgggc gtgatggcga
     5941 tggagtgttt tgtcaccccg caaggtctgc tgatcaacga actggctccg cgtgtgcata
     6001 acagcggtca ctggacacaa aacggtgcca gcatcagcca gtttgagctg catctgcggg
     6061 cgattaccga tctgccgtta ccgcaaccag tagtgaataa tccgtcggtg atgatcaatc
     6121 tgattggtag cgatgcgaat tatgactggc tgaaattgcc gctggtgcat ctgcactggt
     6181 acgacaaaga agtccgtccg gggcgtaaag tggggcatct gaatttgacc gacagcgaca
     6241 catcgcgtct gactgcgacg ctggaagcct taatcccgct gctgccgcca gagtatgcca
     6301 gcggcgtgat ttgggcgcag agtaagttca gttaagcagg tgctcatttg attgccggat
     6361 gcggcgtaaa cgccttatcc ggcttaccgc tccggtaccc attgtaggcc tgataagacg
     6421 cgtcaagcgt cgaatcaggc atggtgcacc gattgccgga tgctctcatc actacagcga
     6481 aatacaggtc cccgcttcgc ccgccagcgt ctcttcaatt cgcgataacg ccccaatcca
     6541 cgcgggttta ctacggcttc tgacataacc actcaccgcc gttaccttcg gccccatcga
     6601 accatcggct ttggcaaatg gcgctaactc atccggtgtg gcatggcgaa tggcacgttg
     6661 ctgcggcgtt ccccagtttt catataccgc atcagcatcg gtgaggatca ccagtccatc
     6721 ggcattaatc tgctcggcga gcaacgcagt ggcgagatct ttatcaatca ccgcttcact
     6781 ccctgcccca tcttccgtca caggcacacc gccgccgcca ctgcaaatca ccacatgccc
     6841 ctctttgagc aacaactcga tggcttcgct gtcgagaatt ttacgcggtt gcggagacgc
     6901 caccacccgg cgcaaatatt taccatcacg tttcatctgc cagccgtaag ccgcttccag
     6961 tgcctcttgt tcttctggct gataaaccgg accaataaat ttctctggct gcaaaaacgc
     7021 cggatcatca ggcgaaacct caatgcgcgt cagcaccgtc gtaacaggcg gtatctgcgg
     7081 ctgtgcgctc aagctctgcg ccagcatata gcctcatccc ctggctttcc gccaccagca
     7141 catccagcgg atacggttct acctctttcc acgccagatt ctgtaacgcc agcagcccca
     7201 cctgcggccc gttgccgtga acaatcgcca gccgataaga acgggccagg cgtgccagcg
     7261 cgggtacagc actggcgata ttgcgatatt gattttccgc cgtcagcgcc tcaccgcgct
     7321 ggagtaaggc gttgccccca agagctacaa ccagtgtttt catggttttc cttgtaataa
     7381 ttgttggcca agccagaacc ccagcagcgt atctgcccct gacgtatgcc ccagcgccag
     7441 cagcgaatca atcgcaacag cggtacgttt cgggcaactc agagcatgga caaagtgcag
     7501 gagtggcgag gcgaaatatc cttgcgcggc ataacgtaaa taactgacgc tcaccgctgt
     7561 ggtaacgagt tgaagattgt cggaacaggc aaaaaacggg cgaccggcgc gcgcatctaa
     7621 agcgccataa taccaagccg ccagcagcat tccgctcaac gtgtcatcat gacttggcgt
     7681 taatccgggg cctttaccca gccagtgccg ccagtcggtc ttaacgccat tgagcgcggc
     7741 ctgaaaacag tgacgaaact ggcgtaattc agcggtcagc ggatcgcttg ccgccatcgc
     7801 cagtggtccg aaaagtccgg tttcctccgc gcgttgcatc catgcagctg caagcggttg
     7861 aggatgcgaa ggcggcgtaa tacgcagcaa acaataacgc tgtggctgtt taaccgtgaa
     7921 acgcccgagg cgaatccctt gagccacaac ctgtggtcgt tcattgccgc ataatccacc
     7981 gcataacgca tcgaattgcg cgcggcgaag cacccatcct ccggggccga aaccactacc
     8041 ctgacgatgc agcgttaaca gttcgccgct ttccgtcatc aggttaatcg cccgccgcca
     8101 cactcccgct aaccgccagg actggcgata attcggtgcg ctactgctgg caagcagagg
     8161 atggatgatc gtcattgcgc gttcctcaac caatccccat gctttcagcc agtgcttcca
     8221 gcgcctgttc aaagcacgcc agcggtgccc gcacggtgcc tgcgccaatc tgcccgatcc
     8281 ccgcctcttt atgggcgata ccggtattga tgagtggcgt aatgccggtt tctaccacgc
     8341 gacgaatatc cagccccagg cacgcgccct gaaaatccca gcctgggatc tgcaactgca
     8401 tattgcgttc aaggtaaatt tccgccatct cttcagatac cgccctggcc gcttccatgc
     8461 cacccgcacc gacaaagcgc gttacgccag gcgctgcgat cattgccgca cctccgatac
     8521 caaaggtttc ggtaatcgcg ctatcgccca tatccgggtt cgcctgctcc tgcgagaagc
     8581 cggtgaaaaa cagaccttgc ggagtgttta caggcgcagt aaaccagcgt tcacccagcc
     8641 cgcttacccg aatcccgaac atattgccgt tgcgggtcat agccgtaacg atgctgcctg
     8701 cgcggatcat cgcgccagca tccatcgccg ccttgcagta ggccatcgcg aggttgagga
     8761 agaactgatc ggtcacgctg aggaaatcga tcacttccgc aatgtgctgt ttatcatgat
     8821 cgaggcgagc aatttgtggg gccagcgtac gcattaacag tgctgaggaa gcaatattgc
     8881 gttgatggaa ctcatcgccc atcgtaatgc cctgcgccat catcgccgtg agatcgatac
     8941 cgcgctccat gcgccccagc gccgcgctta atactggcat taacacatcg cgcatccagc
     9001 gatggcgagt caggacatct tcgccgtaag cgccaaaacg catcactttg ccgatacctt
     9061 cgttgaggtt gcagtacgcc cggttgccgt cggtcacgtt ctcgaccacc agcatcggca
     9121 tactggcaga agtaatgccg cccattggcc cgacggcatt cacatggtga caaggaatga
     9181 agttcacttc cccctgctcc agcatcgcca gtgcctgcgc ttcatctttc gcccagcctt
     9241 cgaacagaca tccgcccacg cacgcccctt tcatgggtcc ggtcatctcc tgccagcgca
     9301 ttggcggccc ggcgtgaagc agtgttttgc cctcgtttag ttcgctgata agtgaaaaag
     9361 ccggttgcac atccagccag tgtggacgag cacgacgaat ttgttcgata accgcagcat
     9421 tggcttgcgc cactgatgta aacatgggaa ccccttattg caaacgttct aataaacgag
     9481 ccagtttttt attgccgccg gcgactggcg accattggta atgcacaacc ggtttgctgg
     9541 cgctttgtag ctccagcgca aagctgcgta atccgatgtt aatcacggcg acgttttcca
     9601 gtaatgacgg tgtatgttgc tgtgcggcag gcgagagcgg ataaattaac gctgccgcca
     9661 gcaaggtggc ttccggcagc gaactcacta ccgcgatccc cgcatcttcc agcgtggcga
     9721 tttgctgcga gcggcattgc gggtcacgtt cagtgcctgt caccgtggca atggcataca
     9781 gtggttgatt atctgaacgc gcggcacagg ctttttgcta ggcgcttacc agcgaggcgg
     9841 caggatcggc agtcgcaccg aagccaatca cgacatcaag tagcaatacg cgcacttgtg
     9901 gtttagcgcc gagatcggca attaactggt tgcgtaaggc tgggtcgatc atcggatggg
     9961 gacgcccgac ggtgtagaaa tcatcgccga ggtcaataat ctggtgacca tcggcgtcga
    10021 gcatcatgcc gtgatgatgg gtatcgtcgg cttccacgcc aaggtgtcca gcaagtaatc
    10081 ccgccgcttc ggcagccagc gtaccgccgg tatacaaacc gcaaataaat ccgctgctga
    10141 caggcgctat tgcgttacgt cgcgccgtga cgcgtgaaag caggcaagcc aggcgtgcgg
    10201 cctcatccag cgaggaggca aaccagacat tctcgtcgcg ggccaccgcc ggggtataac
    10261 ctaaaaacag cgccaccatc ggtttgccgg ttgctttcat ggcattaaca attttcagac
    10321 gcacagcttc
//
LOCUS       DAJVSY010000148        10323 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.150, whole genome shotgun sequence.
ACCESSION   DAJVSY010000148 DAJVSY010000000
VERSION     DAJVSY010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10323)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10323)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10323
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.150"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..86)
                     /locus_tag="OQQ19_003352"
     CDS             complement(<1..86)
                     /locus_tag="OQQ19_003352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
                     /protein_id="HCS1804856.1"
                     /translation="MASISIRCPSCSATEGVVRNGKSTAGHQR"
     gene            complement(640..1002)
                     /locus_tag="OQQ19_003353"
     CDS             complement(640..1002)
                     /locus_tag="OQQ19_003353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YibL family ribosome-associated protein"
                     /protein_id="HCS1804857.1"
                     /translation="MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKAT
                     LEAEIARLREVHSQKLSKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTA
                     LGREMGLQEMAGFSKTAF"
     gene            1287..1496
                     /locus_tag="OQQ19_003354"
     CDS             1287..1496
                     /locus_tag="OQQ19_003354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804858.1"
                     /translation="MGKLGENVPLLIDKAVDFMASSQAFREYLKKLPPRNAIPSGIPD
                     ESVPLYLQRLEYYRRLYRPKQVEGQ"
     gene            complement(1508..2095)
                     /gene="mtlR"
                     /locus_tag="OQQ19_003355"
     CDS             complement(1508..2095)
                     /gene="mtlR"
                     /locus_tag="OQQ19_003355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol operon repressor MtlR"
                     /protein_id="HCS1804859.1"
                     /translation="MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRS
                     FLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVI
                     NRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSL
                     YAMQIQRYQQAVRSTMVLSLTELISKISLKKAFQK"
     gene            complement(2095..3243)
                     /gene="mtlD"
                     /locus_tag="OQQ19_003356"
     CDS             complement(2095..3243)
                     /gene="mtlD"
                     /locus_tag="OQQ19_003356"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709374.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HCS1804860.1"
                     /translation="MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARH
                     SYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIAQVDLVTTAVGPVVLERIAPAIAKG
                     LVKRKEQGNESPLNIIACENMVRGTTQLKGHVMNALPEDAKAWVEEHVGFVDSAVDRI
                     VPPSASATNDPLEVTVETFSEWIVDKTQFKGALPNIPSMELTDNLMAFVERKLFTLNT
                     GHAITAYLGKLAGHQTIRDAILDEKIRAVVKGAMEESGAVLIKRYGFDADKHAAYIQK
                     ILGRFENPYLKDDVERVGRQPLRKLSAGDRLIKPLLGTLEYSLPHKNLIQGIAGAMHF
                     RSEDDPQAQELAALIADKGPQAALAQISGLDANSEVVSEAVTAYKAMQ"
     gene            complement(3473..5386)
                     /gene="mtlA"
                     /locus_tag="OQQ19_003357"
     CDS             complement(3473..5386)
                     /gene="mtlA"
                     /locus_tag="OQQ19_003357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICBA"
                     /protein_id="HCS1804861.1"
                     /translation="MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLT
                     NETLAKLVGPMITYLLPLLIGYTGGKLVGGERGGVVGAITTMGVIVGADMPMFLGSMI
                     AGPLGGWCIKHFDRWVDGKIKSGFEMLVNNFSAGIIGMILAILAFLGIGPIVEALSKM
                     LAAGVNFMVVHDMLPLASIFVEPAKILFLNNAINHGIFSPLGIQQSHELGKSIFFLIE
                     ANPGPGMGVLLAYMFFGRGSAKQSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILG
                     GMTGVFTLTILGGGLVSPASPGSILAVLAMTPKGAYFANIAGVCAAMAVSFVVSAILL
                     KTSKVKEEDDIEAATRRMQDMKAESKGTSPLSAGDVTNDLSHVRKIIVACDAGMGSSA
                     MGAGVLRKKIQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLT
                     NFLDSGLYTSLTERLVAAQRHTENEVKVKDSLKDSFDDSSANLFKLGAENIFLGRKAA
                     TKEEAIRFAGEQLVKGGYVEPEYVQAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKT
                     GVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTT
                     SVDEVLELLAGRK"
     gene            5923..6285
                     /locus_tag="OQQ19_003358"
     CDS             5923..6285
                     /locus_tag="OQQ19_003358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3302 domain-containing protein"
                     /protein_id="HCS1804862.1"
                     /translation="MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAI
                     HTAGWVSLFTLHVIWPFLWIWATLYQPERGWGMQSHVASQEKATDPEIASLSDRISRL
                     EHQLAAEKKTDYSTFPEI"
     gene            6288..7424
                     /locus_tag="OQQ19_003359"
     CDS             6288..7424
                     /locus_tag="OQQ19_003359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HCS1804863.1"
                     /translation="MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLI
                     LLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQAR
                     VDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFS
                     ERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLE
                     QTVIRAPSNGYVTQVLIRPGTYAAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGD
                     DAEVVFNALPGQVFHGKLTSILPVVPGGSYQAQGGLQSLTVVPGTDGVQGTIELDPND
                     DIDALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH"
     gene            complement(7884..8321)
                     /locus_tag="OQQ19_003360"
     CDS             complement(7884..8321)
                     /locus_tag="OQQ19_003360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000763815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804864.1"
                     /translation="MADKAILWALISASTKEERKACSLSYFACKAAEAELGLAYMAAN
                     DNKEFLTSLSNIMRYKIDAGLSESYTCYLLSKGKIIRPYLKNLNPLQLAADCIETVNK
                     IKDKNKKIIDINSVNICSDDKNIKLRVNSTIMAIDDSIKCIDE"
     gene            complement(9029..9490)
                     /locus_tag="OQQ19_003361"
     CDS             complement(9029..9490)
                     /locus_tag="OQQ19_003361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HCS1804865.1"
                     /translation="MKACLLLFFYFSLIDQLHGADVKIKENESVMGSTAMTYDLSEEK
                     LMKLKYKSQHGDSEASFRLYQYYCFTKNNIDKQLRFLERSASQGNVTAQFNYGVFLSD
                     TNPTLSEYYNLNRAIYWMEFAVNNGNIDAKSKLQELKKLKRMDRRKNKENP"
     gene            complement(9502..>10323)
                     /locus_tag="OQQ19_003362"
     CDS             complement(9502..>10323)
                     /locus_tag="OQQ19_003362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HCS1804866.1"
                     /translation="YTPARKIHLYHCDHRGLPLALISTEGATAWCAEYDEWSNLLSDE
                     NPHHLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNP
                     VINVDPQGLVDINLYPESDLIHSVADEINIPGVFTIGGHGTPTSIESATRSIMTAKDL
                     AYLIKFDGNYKDGMTVWLFSCNTSKGQNSFASQLAKELHTNVIGPDTLWTWWGRGTNG
                     KLKMDTVLTAPTNLNSNKDLMAITTKDLGNWITYGPSGHPISNMQGTPEKPSDIR"
BASE COUNT         2649 a         2448 c         2352 g         2874 t
ORIGIN      
        1 cgctgatgtc cggcagtgct tttgccgtta cgcactacgc cttcagtagc ggagcaggaa
       61 ggacatctga tggaaatgga agccacgcac accttaaaat caccatcata cactaaatca
      121 gtaagttggc agcattaccg agttgtccat tgtattattg gtgatttatg ttgctttaca
      181 ttaatgacag tgatgtgtgt cgattaaata ttgttttaag cattcatcat aaaaatgtat
      241 cattcgtttc aaaagatgtc tgtgtttgta tgaatatatt attttcgtgg attctaatga
      301 tgattattaa taaatgtcaa atatgaaaga aaccatgtct gggaaaaaat ttacagataa
      361 tttattgtat gaatatgatg attaaaattt cacaattaaa tccgaaaaaa agagacgtaa
      421 ctgcttgtta attaataaat gatatcttct atatattttt attgtttata ggtggctatt
      481 tcggtaaaaa tgcattttca gaatatcaac cagcggtaaa tcgacgtaaa gggagtgaat
      541 tgtttggtaa ttaggcgagt agacaggaga gtccccgcat tgaccagcta aggcaagcca
      601 gatgcgggtt gatatgatcg aaccagtcgt ctgaggcgct taaaacgcag tcttagagaa
      661 tccagccatc tcctgcaggc ccatttcacg gcccagcgcg gtcattgggt gcacaaccac
      721 cagtccgcga acacttttct tcagcttgcc catatcagcc tgctcttttt tggtaattgc
      781 gcgctgaaac ggcatcttca tcagcttctg tgcttcttta ctcagttttt ggctatgaac
      841 ctcacgcagg cgagcaattt ctgcttccag cgtggctttc tctttttcca gctcggcata
      901 tttgtctgcg gcttcaacca gcgacagatc ggcctgctgg tggcggatgg cgtccaggcg
      961 atcgctgaga cgtttgattt cgtttttttc gacttctttc atgtgatggc ttctgataaa
     1021 gataaattta tagcccctag tatgcgcgac caggtgcttt gttcacaact gatgacattg
     1081 taatagttct gcaacgtaat cattaacatg ctcaaaaact acgcaattcg ttgattaatt
     1141 aagaaatcta tagaaaaaag ataataaaca gcagcggatg attattgagg attcagcacg
     1201 ttttccttaa tgtcatcttt accgggaacc taaactaaaa ttggtggccg cgcattcccg
     1261 gcgcggggta atacggagat atcatcatgg gcaaattagg tgaaaacgtt ccgcttctta
     1321 tcgataaagc cgtagatttc atggcatcaa gccaggcgtt ccgggagtat ctgaaaaaac
     1381 ttcctccccg taacgcgatt ccgtccggaa tacccgatga aagcgtgccg ttatatctac
     1441 aacgtctgga gtattatcgt cggctttatc ggccgaagca ggtagagggg cagtaagcag
     1501 acgttgctta cttttgaaag gcttttttta agctgatttt ggaaatcagc tcagtcagtg
     1561 aaaggaccat tgttgatcgc acagcctgtt gatagcgctg aatttgcatt gcatacaaac
     1621 tggagtctgc tggttcaaac tgtggcggcg gtggtaacgc cgccacgcag tgcagttcac
     1681 caaagggtcc aaggatttcg tcgtcggtaa aggcgtactc gttgccgtcg tgatttagct
     1741 cttcacgcaa tgccatcagc agttccgcat cttcgtattc ctggcggtta atgacgccca
     1801 acccgtaaat gagttttaaa cgcacagaaa gatcgcccag cggaccgtcg ccgtcgagta
     1861 acggttctac agcatacttc accgcgtaat cgtctttgcg gaatacctga agcaccagaa
     1921 gatttaccgc ctcggtcaaa agctcgacgg cggtgatcag aaagcttcgc acggttttgc
     1981 cagcattcag acgctcaagc acacggtttt caaaggcctg ggtttgttcc attgttgcct
     2041 gcatatctga caatctgtta ttcgggcgca gggtgtcctg cgcctggtcc accattattg
     2101 cattgcttta taagcggtta ccgcctcgga tacaacctca ctgttggcat caagaccgga
     2161 aatctgtgcc agcgccgcct gcggaccttt gtcagcgatc agtgctgcca gttcctgagc
     2221 ctgcggatca tcttcactgc ggaagtgcat tgcaccagca atcccctgaa tcagattctt
     2281 gtgcggaagg ctgtattcca gcgtaccgag cagtggcttg atcagacggt cgccagcact
     2341 cagtttacgc agcggctgac ggcctacgcg ctctacatca tctttcagat acgggttctc
     2401 aaaacgaccg aggattttct ggatgtacgc cgcatgtttg tctgcgtcaa agccgtagcg
     2461 cttgatcagt accgcaccac tttcttccat cgcacctttt accaccgcgc ggattttctc
     2521 gtcgagaata gcgtcacgaa tggtctgatg accggccagt tttccgaggt acgcggttat
     2581 agcatgaccc gtgttcaggg tgaagagttt acgttcgaca aatgccatca ggttgtcggt
     2641 taactccatg cttgggatgt tcggcagtgc gcctttgaac tgcgttttat cgacaatcca
     2701 ttcgctgaaa gtttctaccg tcacttccag cggatcgtta gttgccgaag ccgaaggcgg
     2761 tacgatgcgg tcaacggcgg aatcgacaaa gccaacgtgt tcttctaccc acgctttggc
     2821 gtcttccggc agggcgttca tcacatggcc tttcagctgc gtggtaccgc gtaccatgtt
     2881 ttcacaggcg atgatgttca gcggggattc attaccttgt tctttgcgtt tcaccagccc
     2941 tttggcgata gccggagcaa tacgttccag cacaaccggg ccaacggcgg tagtgactaa
     3001 atcgacctga gcaatcagat caacgacatc atcaccaatg ctgctgacag cattgacgcc
     3061 ggaaacggta tctacctgct cggtttcacc aaccacatga acctgatagc tatgacgggc
     3121 attcagggca tcaagtacca cctgattgac atcggcaaac gtcagttgga tacccgcgtc
     3181 tgccagcagt ttaccgataa agccacgacc gatattacct gcgccaaaat gtaatgcttt
     3241 catagtatta accttcatca atgtttttac ccgagagggc tggggtgagg cttttccctc
     3301 acccaaaccc tctccgtgag gagaggggca gcgccggatg cggcgtaagc gccttatccg
     3361 gcctacaaga acgtgcaaat tcaacaaatc gtgatgcatc ctgtaggcct gataagcgta
     3421 gcgcatcagg caattaaccc caccttctcc atgtggagag ggtgggattg gattacttac
     3481 gacctgccaa cagttccagc acttcatcca cgctggtggt gtgtgccaga cgctcgatga
     3541 cggactcatc atccagtgca ttggtcaggc tggtgataac ctgaatgtgc tcgttgttac
     3601 gggctgcaat accaatcacc agacgggcaa tgtcatcttc ctcttcaccg aagcgcacgc
     3661 cttccgggta ctggcagaac accacgcccg ttttcagtac gcgatctttc gcttcaaccg
     3721 taccgtgtgg caccgcgata gactcaccca gataagtcgg ggtcagtttt tcacgatcca
     3781 gcatcgcctg aacgtattcc ggctcaacgt aaccgccttt caccagctgc tcgccagcaa
     3841 aacgaatcgc ttcttctttg gttgctgctt tgcgaccgag gaagatgttc tccgcgccca
     3901 gtttgaacag gttagcactg gaatcgtcaa agctgtcttt cagactgtct ttcactttca
     3961 cttcgttttc agtatggcgc tgggcagcaa ccagacgttc ggttaggctg gtgtacaggc
     4021 cgctgtcgag gaagttggtc agcgaaatat gctgtgcctg cggaacctgg cgcatagcgc
     4081 gttcggtcag gtcacggtga gtgatgacga ggtccacatc tggcggcagg ttgttgatcg
     4141 cgctgttagt gaccgaaatc tgcgacagac ctgcatcctg aattttctta cgcagcacgc
     4201 ctgcgcccat cgcacttgaa cccataccgg catcacaggc aacgatgatt ttacgtacgt
     4261 ggctcaggtc gttagtcaca tcgcccgcag acagcggaga tgtgccttta gactcagctt
     4321 tcatgtcctg catacgacga gttgctgctt caatatcatc ttcttctttc actttgctgg
     4381 ttttcagcaa aatagcagag acaacgaagg agacagccat cgccgcacac acacccgcga
     4441 tgttagcgaa ataagcccct tttggtgtca tcgccagtac agcaaggata gaacccggag
     4501 atgccggaga aaccagacca ccgcccagga tagtcagcgt gaacacgcca gtcataccgc
     4561 cgaggatgac tgcgaggatc agacgcggat tcatcagcac atacgggaag tagatttcgt
     4621 ggataccacc caggaagtgg atgattgccg caccgcccgc agactgttta gcgctaccac
     4681 gaccaaagaa catgtacgcc agcagcacgc ccatacctgg acctgggtta gcttcaatca
     4741 ggaagaagat tgatttaccc agttcatggg actgctgaat acccagcggc gagaagatac
     4801 cgtggttaat ggcgttgttg aggaacagga ttttcgccgg ttcaacaaag atagacgcca
     4861 gcggcagcat gtcatggaca accatgaagt taacgcccgc agccagcatt ttggacaggg
     4921 cttcaacaat cgggccaatg ccgaggaatg ccagaatagc gaggatcatc ccgatgatgc
     4981 ctgcggagaa gttattcacc agcatctcaa aaccggattt gatcttaccg tctacccagc
     5041 ggtcgaagtg cttaatgcac cagccgccca gcggacctgc aatcatagaa ccgaggaaca
     5101 tcggcatgtc tgcgccgacg ataacgccca tggtggtgat ggcaccgact acgccgccac
     5161 gttcgccgcc taccagctta ccaccggtat aaccgatcag cagcggcagg agataagtga
     5221 tcatcggccc gaccagcttc gccagcgtct cgttcgttaa ccaccctgtt ggaataaata
     5281 acgcggtgat gataccccac gcgataaacg cgccgatatt tggcatcacc atgttgctga
     5341 ggaaacgacc aaagctttgc actttgatct taatatcgga tgacataaaa acaccccttc
     5401 ttatgtttgc tgtcgcgcag gctggaagcc cgaggttttt tgttaatgtg gcggcagagg
     5461 tagccggacc ttgtagatac tgcgaaatct ggcactgaat cggttaactg tccagtcgac
     5521 ggccttttgt gtgatattaa tcacataaat ataggaggta gagaggtaat tgacgtgacg
     5581 ttcatcacaa aacgcttgtg taaaaaagca acaaggcggc gattttcgct aaaaatggca
     5641 tttaaatgtg agtagtatca catttttgtt ttgatggttt gttgaatctt tgtgatctga
     5701 atcacaagat attttcttac ggcgttcacc tgatgtgatc tacagcatgt tatgccttcg
     5761 tcatacaatc gttatgtaac taagcaactc atcacctcta aaaattattc tttggtgtta
     5821 tggcgagaat cgcgaacccg gattattgtc aaaatatcag cctgactccc ttctggctgc
     5881 cagcccaaaa acaacactga taaacgtgaa tccgaggcag atatgtttct aaactatttc
     5941 gcgttgggag tgctgatctt cgtctttctg gtgatttttt atggaatcat cgcgatacat
     6001 gacatccctt atctgattgc caaaaagcgc aatcaccccc atgccgacgc tattcatacg
     6061 gcgggctggg tgagcctgtt tactctgcat gttatctggc cgtttctgtg gatctgggcg
     6121 acgctctatc aaccggagcg tggctggggt atgcagtcac atgttgcgtc gcaggagaaa
     6181 gcgactgacc cggaaatcgc ctcactttct gaccgaattt cccggctgga gcatcaactc
     6241 gccgccgaga aaaagactga ctattccacg ttcccggaga tctaattatg gatctattga
     6301 ttgttttaac ttacgtggcg ctggcgtggg cggtctttaa aatcttccgc attccggtaa
     6361 atcagtggac gctggcgacg gcggcgctgg gaggcgtgtt tctggtgagt ggtttgattt
     6421 tgttgatgaa ctacaaccac ccttacactt ttaccgcgca aaaggcagtg atagcgatcc
     6481 ctatcacgcc acaggtgacg ggaattgtta ctgaagtcac tgacaagaat aatcagctta
     6541 ttcaaaaggg cgaggtgctt tttaagctcg acccggttcg ttaccaggcg cgagttgaca
     6601 gacttcaggc tgacctgatg acggcgacgc ataatataaa gacgctgcgt gcgcagctca
     6661 ctgaagcgca ggccaacacc acccaggttt cagcggagcg cgaccgtctg tttaaaaatt
     6721 atcaacgtta cttgaaaggc agccaggcgg cggtgaatcc gttctcggaa cgtgacatcg
     6781 acgatgcgcg gcaaaatttc ctcgcgcagg atgcgctggt gaaaggctcg gtggcggagc
     6841 aggcgcagat ccagagccag ctcgacagta tggttaacgg cgagcaatcg cagattgtga
     6901 gcttaagagc gcaacttact gaagcaaaat ataaccttga gcagactgtc attcgcgcgc
     6961 cgagcaatgg ctacgttact caggtactga tccgcccagg tacatacgca gctgccttgc
     7021 cgctgcgtcc ggtgatggtc ttcatccccg agcaaaaacg gcaaattgtc gcccaatttc
     7081 ggcaaaactc gctgttacgt ctgaaacccg gcgatgatgc ggaagtggtg tttaacgcgc
     7141 tacctgggca ggtgtttcac ggcaaactga ctagtatttt acctgtcgtg ccaggcggtt
     7201 cttatcaggc gcagggggga ttgcaatcat taacggtcgt gcccggcacg gacggtgtgc
     7261 agggaaccat tgaactggac cctaacgatg atatcgatgc cttacccgac ggcatctacg
     7321 cccaggtggc ggtttactcc gaccatttca gccatgtttc ggtgatgcgg aaagtgctgc
     7381 taagaatgac cagctggatg cattatcttt atttggatca ttgaggggga ggggggagat
     7441 tatggaactt tgctccttgt aaggactaat tatttttgca tattacttca ttagctgcga
     7501 tgatttttct ttaatattca ttatgttaat aagttctgga tgagtgtgct ctcattggat
     7561 tttttatccg tcttgttctg ccgcaggatg agactataca tcgtcgagat cgcaatgatg
     7621 atatgagttg ttcctcctgc gacggctcta atcaaaaaag agcaggagtg cttttccatc
     7681 tattgcgatg atggctttat tatctgaagg atgacagtca catttaaaaa atatttaatc
     7741 tatagatcac aatgtagggt catggaatat atgtatacaa ctattttctt cttcactttt
     7801 aattatcgta ttcattataa aactaagtta aaaaaactcc tggagagtga gttattaata
     7861 tatttttaaa taaaattaag ttatcattca tcgatgcatt ttatagaatc atcaatggcc
     7921 ataatagtac tattaactct caattttata tttttatcat cactacaaat attaactgaa
     7981 tttatatcaa tgattttttt attcttatct tttattttat ttactgtttc aatgcaatca
     8041 gcggcaagtt ggagtggatt tagatttttc agatatggtc ttatgatctt tcccttactt
     8101 aataaatagc atgtatagga ttcggaaagt ccagcatcta ttttgtacct cattatatta
     8161 gataaggatg tgagaaattc cttgttatca ttcgcagcca tatatgccag tccgagttca
     8221 gcctctgcgg ccttacaggc aaaatagctt agtgaacacg cttttcgttc ctctttagta
     8281 ctggctgata ttagtgccca taatattgct ttgtctgcca aatctaactc tctctgaaat
     8341 tgtcttgcag taactgcact cgcagaaata gagaaaaaaa tacaattgtt aataaccttg
     8401 ccatattttt ttagtccgta actgttaatg tgctatctgg ctctgaaaat attaactcat
     8461 ttaatttttg catgtcatta gataaaccag ttatacaacc ctcggaacag aatcgaggtc
     8521 ctaaagacgg accaaaagcg tttaaacaac tatgtattga aaatccattg cgattataag
     8581 ttcctgtatt aactgacggt actaatcgta tgccgtcagg ttttctattg cttgctcccg
     8641 ggtcattaac attccaactc cataggcctt gaggtattgg ccatctattt ataaatgtgt
     8701 acaacgggga ttatttttac attgcatatt attaccagaa gcgactggaa tactaagcac
     8761 atcataaaaa ttatcatcac atggtatatc tgaaacacac gaaagcatac ctaaagttat
     8821 gctgtataaa caggtggcta atcccaaggg gatcgattcc agaaatcggg ttcaacggat
     8881 actgataaaa attccaccta ccttccagcc caatcggagc ctgagtgtta taccgcccct
     8941 gctgcggtta atgttaccga taatagttat agtacagccc tgattcatca tcatactact
     9001 gctgcggcag tctgatgaac tattgctttt acggattctc cttattcttc cttctatcca
     9061 ttcgctttag ctttttgagc tcttgaagtt tgctctttgc atcaatatta ccgttattta
     9121 cagcgaattc catccaataa atagctctat tcaaattata atattctgat aatgttggat
     9181 ttgtatctga taaaaagacc ccataattaa actgcgctgt aacattcccc tgagatgctg
     9241 atctttccaa gaatcgcaat tgtttatcaa tattattttt agtaaagcag taatattgat
     9301 atagtcgaaa tgatgcctct gaatcaccat gttgtgattt atacttcagt ttcatcagct
     9361 tttcttcact taaatcatag gtcattgctg tagatcccat cacactttcg ttttctttta
     9421 ttttcacatc agcaccatgc aattgatcaa taagagaaaa ataaaaaaat agtaacaagc
     9481 atgctttcat acatctacaa cctatcttat atcactgggt ttttctggcg taccttgcat
     9541 attagaaatg gggtgcccag atggcccata tgttatccaa ttaccaaggt cttttgttgt
     9601 tatagccatt agatccttat ttgaattaag gttcgttggt gctgttagca ctgtatccat
     9661 ttttaactta ccattagttc ctcgccccca ccacgtccat agcgtgtcag gtcctattac
     9721 atttgtatgt aactctttag ctaattggct agcaaatgaa ttttgtcctt tacttgtatt
     9781 acaagaaaat aaccaaactg tcatcccatc tttataattc ccatcaaatt taattagata
     9841 tgctagatct ttagctgtca tgatactgcg cgttgcggat tcaatagatg tgggggtacc
     9901 atgccccccg attgtgaaaa cgcctgggat attaatctca tcagctacag aatggataag
     9961 atcactttcg gggtataaat ttatatcaac caaaccttgc ggatctacat ttatgaccgg
    10021 attcaacgga tactgataaa aattccatcc ccccttcagc ccaatcggat cctgagtgat
    10081 ataccgcccc tgcagcgggt cataatagcg gtggcggttg taatacaggc cggactcctc
    10141 atcatactgc tgacccggca ggcgaatgag ctgctgcaga tgatgcgggt tctcatcact
    10201 cagcaggttg ctccattcat catattctgc gcaccacgct gttgcccctt ccgtgctgat
    10261 gagcgccagc ggcaggccgc gatggtcgca gtggtacagg tggatttttc gcgccggcgt
    10321 gta
//
LOCUS       DAJVSY010000149        10245 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.151, whole genome shotgun sequence.
ACCESSION   DAJVSY010000149 DAJVSY010000000
VERSION     DAJVSY010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10245)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10245)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10245
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.151"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..186
                     /locus_tag="OQQ19_003363"
     CDS             <1..186
                     /locus_tag="OQQ19_003363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310303.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804867.1"
                     /translation="QICEMFGRVQRDPFWVKNIMSPSKLREKWDELVIRLGRSPVQRC
                     VNHISEPDTEIPPGFRG"
     gene            227..649
                     /locus_tag="OQQ19_003364"
     CDS             227..649
                     /locus_tag="OQQ19_003364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001151251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF977 family protein"
                     /protein_id="HCS1804868.1"
                     /translation="MAKVFTQEEREKIKGQVVELVRQSGRETLRQLEVKTGATRYLMS
                     VLARELVASGDVYNSGYGLFPSEQARKDWQNARKKLSRAKLKEPSAVDPDLIWSLPDG
                     EIRRYDRRQNIICRECRKSEVMQRILAFYQGNARYLLK"
     gene            902..1801
                     /locus_tag="OQQ19_003365"
     CDS             902..1801
                     /locus_tag="OQQ19_003365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000566845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMEK domain-containing protein"
                     /protein_id="HCS1804869.1"
                     /translation="MIDPLIRNLQSDIALLQLYIAQRKQAGFHDMERIIESLTIFMFR
                     ALKMGELVNMNQIKVNFPAIDLADNKNMIAVQVTTNASPAKIKKTIESFEETNEIGES
                     LKDKYSTLYIFGFCKASRYLTPSYCKIIDPSYFVNELCDKADEDMVQDMIDAIRRHHD
                     YTSLHPWSDKDSLEIILNIINRNAIKHRMSCEGSLSDMLTGLKEINEVITKGTIQRKQ
                     RSKSISDFKDQSMVKFMRGVMDDLSVIQAIVNKSKVNQGDMVYISHEDMINIDKLKAK
                     IASDSSEIARLNNIDITLNVVDL"
     gene            complement(2116..2769)
                     /locus_tag="OQQ19_003366"
     CDS             complement(2116..2769)
                     /locus_tag="OQQ19_003366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001360221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HCS1804870.1"
                     /translation="MNYKINGINIRSENAAKPHTMPSNYLCKQIESTNKNGNALDFGC
                     GKLRYSEQLVNKFETVTFLDSRRQLERVQIIRGVQTTIPDYVINNYKNANIVSYENID
                     KITNHYDFILCANVLSAIPCESTIHKVLSAIRELLKSDGEALIVNQYKSSYFKRYESG
                     IKHLHGYIYQNSRNAFYYGLLDVDTVSKICSDNNLEIIKSWSKAGSSYVVVGKHIHI"
     gene            complement(2786..3478)
                     /locus_tag="OQQ19_003367"
                     /pseudo
     CDS             complement(2786..3478)
                     /locus_tag="OQQ19_003367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000892866.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            4221..4376
                     /gene="hokD"
                     /locus_tag="OQQ19_003368"
     CDS             4221..4376
                     /gene="hokD"
                     /locus_tag="OQQ19_003368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokD"
                     /protein_id="HCS1804871.1"
                     /translation="MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVF
                     TAYEPEE"
     gene            4593..4844
                     /locus_tag="OQQ19_003369"
     CDS             4593..4844
                     /locus_tag="OQQ19_003369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804872.1"
                     /translation="MMNIEELRKIFCEDGLYAVCVENGNIVSHYRIVCLQKNGAALIN
                     FVDARVTDGFILRDGEFVTSLQALKEIGIKAGFSAFSEE"
     gene            4911..5189
                     /locus_tag="OQQ19_003370"
     CDS             4911..5189
                     /locus_tag="OQQ19_003370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804873.1"
                     /translation="MARNAKYYNHDNSTVLAHTHERYSHAFKSDWYQHPPCTEEQADW
                     LIQCYRRRGCEVKKALSLDYRHWIISVRLPYSERPPRPSRTFQQRIWR"
     gene            5191..6237
                     /locus_tag="OQQ19_003371"
     CDS             5191..6237
                     /locus_tag="OQQ19_003371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HCS1804874.1"
                     /translation="MRVLLRPVLVPELGLVIVKPGRESMPVFHNTRVLVEPEPKSMRN
                     LSSGVVPAVRQPLAEDKSLLPFFSDERVIRAAGGAGALSDWLLRHVKSCQWPHGDYHH
                     SETVIHRYGTGAMVLCWHCDNQLRDQTSESLGQLAHQNLSAWMIDVILHAMNGSQERE
                     LSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQR
                     TKNLAPLSHAHQQNPPQEETVVSIAVDPESPESFMKRPKRRRWVNEKYTRWVKTQPCA
                     CCGKPADDPHHLIGHGQGGMGTKSHDIFTLPLCREHHNELHADPLAFEEKHGSQVDLI
                     FRFLDHAFATGVLG"
     gene            6250..6624
                     /locus_tag="OQQ19_003372"
     CDS             6250..6624
                     /locus_tag="OQQ19_003372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HCS1804875.1"
                     /translation="MLIDLVLPYPPTVNTYWRRRGSTYFISEEGKRYRRAVALIVRQQ
                     RLKLSLSGRLAIKVIAEPPDKRRRDLDNILKAPLDALTHAGLLIDDEQFDEINIVRGQ
                     RVPGGRLGVKIYPIMLEGQVKK"
     gene            6621..7442
                     /locus_tag="OQQ19_003373"
     CDS             6621..7442
                     /locus_tag="OQQ19_003373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitermination protein"
                     /protein_id="HCS1804876.1"
                     /translation="MKLEDLPKYYSPKSPGLTDASASTSKDALSITDVMAAQGMTQNR
                     AEMGFSAFLGKMGISMNDRERATELLTEYALSRCDRVAALRKLPAEIKPAVMRIMASY
                     AFEDYARSAASKKQCSCCHGKKFIESEVFTNKIQYPDGKPPVWAKCTKGVYPSYWEEW
                     KKVREVVKVACPECGGKGEVSTACKDCRGRGVAIHREESVKRGMPVIRDCQRCGGRGC
                     ERLPSTEAFNAICKVTSAITLDTWKKSVKRFYDTLVVRFDIEEAWAERQLKRVTR"
     gene            7669..7909
                     /locus_tag="OQQ19_003374"
                     /pseudo
     CDS             7669..7909
                     /locus_tag="OQQ19_003374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309113.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            8017..9066
                     /locus_tag="OQQ19_003375"
     CDS             8017..9066
                     /locus_tag="OQQ19_003375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001575625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HCS1804877.1"
                     /translation="MLNTVKISSCELINADCLEFIRSLPENSVDLIVTDPPYFKVKPE
                     GWDNQWKGDDDYLKWLDQCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRERFSVLNH
                     IIWAKPSGRWNGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYAAKGSALKQHVMA
                     PLISYFRDARAALGITAKQIADATGKKNMVSHWFSASQWQLPNESDYLKLQSLFARVA
                     EEKHQRGELEKPHHQLVDTYTSLNRQYVELQSEYKHLRRYFGVTAQVPYTDVWTHKPV
                     QFYPGKHPCEKPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALGRRAIGVELET
                     GRFEQTVREVQDLIV"
     gene            9116..9191
                     /locus_tag="OQQ19_003376"
     tRNA            9116..9191
                     /locus_tag="OQQ19_003376"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9149..9151,aa:Ile,seq:cat)
     gene            9201..9277
                     /locus_tag="OQQ19_003377"
     tRNA            9201..9277
                     /locus_tag="OQQ19_003377"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9235..9237,aa:Arg,seq:tcg)
     gene            9367..9453
                     /locus_tag="OQQ19_003378"
     CDS             9367..9453
                     /locus_tag="OQQ19_003378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3927 family protein"
                     /protein_id="HCS1804878.1"
                     /translation="MVDFSSRIMSVLSDGVLVAGVWLLLSRC"
     gene            complement(9942..10154)
                     /locus_tag="OQQ19_003379"
     CDS             complement(9942..10154)
                     /locus_tag="OQQ19_003379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001333559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804879.1"
                     /translation="MPLHGAGCLPVNSVPAPESAIIPYTYSLITPPHRGIHHAKFFNK
                     LPAGQTIIASLNYEQRGILRENCFLQ"
BASE COUNT         2832 a         2121 c         2516 g         2776 t
ORIGIN      
        1 caaatttgtg aaatgtttgg tcgggtacag cgggatccgt tctgggtaaa aaacatcatg
       61 agcccgtcaa agctccgcga aaaatgggac gaactggtca tccgcctggg gcgttcacct
      121 gtacagcgtt gtgttaatca tatttctgaa ccggatacag aaattccgcc tggtttcaga
      181 ggataagttt tgatttcagg tcatgaggta attttaaggg ggacttgtgg caaaagtttt
      241 tacacaagaa gagcgggaaa aaattaaagg gcaggtggtg gaactcgtgc gccagagcgg
      301 tcgtgagacg ttacggcaac tggaagtcaa gacaggtgcg acaagatatc tgatgagcgt
      361 tctcgcaaga gagctggttg ccagcggcga tgtatacaac tctggttacg ggttattccc
      421 gtctgaacag gcgcgtaagg actggcaaaa tgcccgtaaa aagctctcaa gggcaaagct
      481 gaaggaacca tctgcggttg atccggacct tatctggtca ttacctgacg gagaaatacg
      541 tcgctacgac aggcgtcaga acataatctg tcgcgagtgc cggaagagtg aagttatgca
      601 gcgcatacta gcattctatc agggaaatgc tcgatattta ttgaagtgat gagattaaag
      661 tttattagtt cagatattga ttggctcttt tgtggagtag ggtagagtta gtgtgtttgt
      721 ctgcttggtg ccagcagcgg atatgtttaa caacagaaag cattcagcat ggttagtgga
      781 tttgcaaagt ggattaggat ttgagaaact ttgatgaagt tgtaaagctt gtttctataa
      841 aaatagaaat ttaactaata gttaaacaca cctccagctt cattgaaaag gattattagc
      901 tatgattgat ccacttatta gaaacttaca gagtgatatt gcactactcc agctttatat
      961 cgcgcaacgc aaacaggcag gctttcatga catggaaaga ataattgagt cattgaccat
     1021 ctttatgttt cgcgcgctga aaatgggtga actggtaaac atgaatcaga ttaaagttaa
     1081 ttttcccgcc attgatttag ctgataataa aaacatgata gcagttcaag ttactacgaa
     1141 tgcaagtcca gcaaaaatta aaaaaactat cgaatctttt gaggaaacaa atgaaatagg
     1201 agagagtctg aaagataaat actctacttt atatattttt ggtttttgta aagcctcaag
     1261 atacctaact ccaagttatt gtaaaataat cgaccccagc tatttcgtga atgaactttg
     1321 cgataaagca gatgaagata tggtccagga tatgattgac gccattcgac gccatcatga
     1381 ttatacatca ttacatccat ggagtgataa agattcactc gaaattatac tcaatattat
     1441 taatcgcaat gcaataaaac atcggatgag ttgcgaaggc agtctgtctg atatgctcac
     1501 tggtttaaaa gaaattaatg aagtaattac aaaaggaaca attcaacgta agcaacgttc
     1561 aaaatcgata tctgacttca aagatcaaag catggtgaaa tttatgagag gtgtaatgga
     1621 tgatttgtct gttattcaag ccatagtgaa caaatctaaa gttaaccaag gtgatatggt
     1681 ttatataagc catgaagata tgattaatat tgataaatta aaagctaaaa tagcaagtga
     1741 ttcatcagag attgcaaggc taaataatat tgatataaca ctaaatgttg ttgatttata
     1801 attgtcgatt tagcaaaaca gagaatgctt tgaaagtttc accgagaaat atttattgtg
     1861 aacctcctta ttgtttatcg acttttactc tccgctcatt gcagtactgt cggagaaggc
     1921 tactatgtac aagaagcagc taacataagc gagcatcact attgatatta ggaagagtat
     1981 ataaaaactt catgctgaac cttacaaaag tagataaacc ggcaatggcc taagtggcag
     2041 ggtcatgttg atccggcact gccgagctaa taattaacaa gcaaatcact ctttctaata
     2101 atttgttgaa ataaactaaa tatgtatatg tttaccaaca accacatatg aactacctgc
     2161 tttgctccat gattttatta tttctaaatt attatctgag catattttac ttacagtatc
     2221 cacatctaat aaaccatagt agaaagcatt acgagagttt tggtatatat acccatgcaa
     2281 atgtttaata ccgctctcgt acctcttgaa ataagaactt ttgtattgat tgacaatcag
     2341 tgcttcacca tcactcttta ataattctct aatcgcactg aggactttgt gaattgtgga
     2401 ttcacatgga attgcggaaa gcacgtttgc gcaaagtatg aaatcataat gatttgttat
     2461 tttatctata ttttcataag aaacaatatt agcattctta tagttattta tcacgtaatc
     2521 tggaatcgtg gtttgtacac ctctgataat ttgcactctt tctagttgtc ttctggaatc
     2581 taaaaatgtc acagtttcaa atttatttac taattgttct gaatatctaa gttttccaca
     2641 tccaaaatca agggcattgc catttttatt agtgctttca atctgtttac agagatagtt
     2701 agatggcata gtgtgcggtt tcgctgcatt ttctgaacgt atgtttattc catttatttt
     2761 gtaattcaaa atcaacctcg tttaaaaaaa tattgttatt gttaaagaat tcttttattt
     2821 tgctatcagg tatttgtctt acttggcttt ctgttcttgg tttaactgat gctatgaaaa
     2881 taaggaagtc aaatgcgaca agagaaataa tccacaacca aagattaatt aaagagccag
     2941 taacagagaa tatatttgtt aatttggcga tacttattat taaaatagta acaaatgcga
     3001 ttactgtatg ttcaaagaaa acccaaaagt aataaacttt gttccagaaa agttcaacgt
     3061 aatgtttgtc ttttaactct ttaacttctg ggtaatacag tttactcatt accttgtgag
     3121 attcatcagt agttaatttt ctcgtaacgc ctgcaatttt tgctaatggt ttaataatta
     3181 aatgactatc ccacatcttc cttattccaa taatttttgc tacattatta tgtagatcta
     3241 aagctccact aattactgac caaaaaactg aagatgcaat tggtaatatg ccaaaggtta
     3301 atatccattt aataaattcc tcgtagtctt taacgggggg gatatacttg gcattaatgc
     3361 caaccaatgg catgtagcca taaatgacta atgataggta aaatataaat gtagtaataa
     3421 aagtcgcctt atggagcata ggcaacattt cattataact ctttggtggt tctaacattt
     3481 tactctccaa acattcaaaa aaaagctaat cttctataat aacgaaattc agctggcaca
     3541 attaaagatt aattgccacc aatttcttga ttttataatt ttatctaaat gtttttgatt
     3601 aatctagtcc taaaagaaac ctactgcata aatatttatg ctgatgaccc actccctgtt
     3661 cgttaacaca tagcaacgtt agtaatgcat cctaagtgat caatattttt gctagcttca
     3721 tctgctcgct caaagggaac tataatgttg gcttgcgtgt gacttggcat gtttaaagaa
     3781 gtgctggtgg tgactggttg ctgttttcca tttccacaga acaaaatcat agaaactata
     3841 cccagtagtt gtattgaatc actgacgaga cagcctcata tttatcagga ctggtgtacg
     3901 tccaatacag gaggttgtgg tgctggttct caaatgtgcg ctggctattg ctgctgtaat
     3961 ggcaatttat tgtcttgctg ttgttcttat ggatcacctt tctgattgat ttcatattgg
     4021 cgaggtaacg gtagttaagt agaattgctg cgggtgcttg aggctatctg cctcgggcat
     4081 caacaccaaa ggcagataga gaaaagcccc agttaacatt acgcgtccgg caagacgctt
     4141 aacattaatc tgaggccata tctatgctct acacacgtag gttagcctct tacgtgccga
     4201 aaggcaagga gaagcaggct atgaagcagc aaaaggcgat gctaatcgcc ctgatcgtca
     4261 tctgtttaac cgtcatagtg acggcactgg taacgaggaa agacctctgc gaggtacgaa
     4321 tccgaaccgg ccagacggag gtcgctgtct tcacagctta cgaacctgag gagtaagaga
     4381 cccggcgagg gagaaatccc tcgccacctc tgatgtggca ggcatcctca acgcacccgc
     4441 acttaacccg cttcggcggg tttttgtttt tattttcaac gcgtttgaag ttctggacgg
     4501 tgccggaata gaatcaaaaa tacttaagta gcgcgcaggg ataagaggga tggtccctta
     4561 aaggggagag ctaattatcc ggaaggattc tgatgatgaa catcgaagaa ctgcgtaaaa
     4621 ttttttgtga agatggcctc tatgctgtgt gcgttgaaaa tggaaatatt gttagtcatt
     4681 accgcattgt gtgtttgcaa aaaaatgggg ctgcgttaat taattttgtg gatgcccgag
     4741 tgacggacgg atttatcttg cgcgacggtg agtttgtcac ttcattacag gcattgaaag
     4801 agatcggaat aaaagctggc ttttctgctt tttcagaaga ataaactcat ctacaatctt
     4861 gcgcggggct gaactcccgc tgagtaacac cgtgccaccg gagaaaaccg atggcacgca
     4921 acgcaaaata ttacaatcat gataattcga ccgttcttgc ccacacgcac gagcggtatt
     4981 ctcatgcatt taagtcagac tggtaccagc atcccccatg cactgaagaa caggccgatt
     5041 ggctcattca gtgttaccgc aggcgcggat gcgaggttaa aaaagccctt agcctcgact
     5101 accgtcactg gataatctcc gtcaggctcc cttactccga acggccaccg cgtccgtccc
     5161 gcacattcca gcaacgtatc tggaggtaac gtgcgggtat tacttcgacc tgttctggta
     5221 ccggaactcg ggctggtgat cgttaagccg ggccgtgaat ccatgccggt attccacaat
     5281 acccgggtac tggtggagcc ggaaccgaaa agcatgcgta atctgtcgtc cggggtcgtt
     5341 cctgccgttc gccagccgct ggcggaggat aaatcattac tgccattttt cagcgacgaa
     5401 cgagtgattc gtgctgctgg tggcgctggc gcattgtctg actggttact gcgccatgtt
     5461 aaatcctgcc agtggccaca cggcgattat caccacagtg aaaccgtcat tcaccgttat
     5521 ggtaccggcg caatggtgtt gtgctggcac tgcgacaacc agctgcgcga ccagacctcc
     5581 gaatcactcg ggcaacttgc tcaccaaaac ctgtctgcat ggatgattga cgtcatactc
     5641 catgcaatga atggctcgca ggaacgggaa ttatcgctgg ctgaattatc ctggtgggcg
     5701 gtccgcaatc aggtggcgga cgcgctaccg gaagcggtat tacgtcgttc gctggggttg
     5761 cgtgcggaaa aaatccgctc aatgtaccgt gaaagcgaca tcgtaccggg agagcagacc
     5821 gccaccagca tactgaagca gcgcacaaaa aatcttgcgc cgctgtctca cgcccaccag
     5881 caaaacccgc cacaggaaga gacggtggtc agcattgccg ttgatcctga gtctccggaa
     5941 tctttcatga aacgacctaa acgtcgccgc tgggttaacg agaaatacac acgctgggtg
     6001 aagacacagc cgtgtgcgtg ttgtggtaag ccagccgacg atccccatca cctgattggt
     6061 catggtcagg gcggaatggg gacaaaatct cacgatattt tcacgctacc gctgtgtcgg
     6121 gagcatcaca acgagcttca tgcggatcct ctggcgttcg aagaaaagca tggttctcag
     6181 gttgatttaa tttttcgttt tcttgatcac gcctttgcaa ctggcgtgct tgggtaaaag
     6241 aggtgactga tgctcataga tttggtttta ccttacccgc cgacggtgaa cacttactgg
     6301 cgacgccgtg gcagcacata ttttatctcg gaggagggaa agcgttatcg ccgggctgtg
     6361 gcgcttattg ttcgccagca gcggctgaaa ttaagcctgt ccggaaggct ggcgataaag
     6421 gtgattgcag agccaccgga taagcgtcgt cgcgacctgg acaatattct gaaagcacca
     6481 ctggatgcgc tgacgcatgc cggacttctc atagacgacg agcagtttga tgaaatcaat
     6541 attgtgcgcg gtcagcgcgt tcctgggggg cggctgggcg tgaagattta ccccataatg
     6601 cttgaagggc aggtcaaaaa atgaaactgg aagatttacc gaaatactac tccccaaaat
     6661 cccccggcct gactgatgca tcggcctcaa cgtcgaaaga tgcgctgagt atcactgatg
     6721 tgatggccgc gcagggcatg acacagaatc gggctgagat ggggttttct gcgttccttg
     6781 ggaaaatggg cattagtatg aatgacagag agcgggcaac agaattgctg acagaatatg
     6841 cactcagtcg gtgtgatcgc gtggcggcgt taagaaaact cccggcagaa ataaaaccgg
     6901 cagtgatgcg tattatggct tcgtatgcgt ttgaagatta tgcccgtagc gcggcgagca
     6961 aaaaacagtg ctcctgctgt cacggaaaaa aatttattga aagcgaggtt tttacaaaca
     7021 agatccagta tccggatggt aagccgccgg tatgggcaaa gtgtacgaaa ggtgtgtatc
     7081 cgtcttactg ggaagaatgg aaaaaagtca gggaggtggt aaaagttgcc tgtccggagt
     7141 gtggcggaaa gggtgaggtt tccaccgcct gtaaggattg ccgtgggcgt ggtgtcgcca
     7201 ttcatcgtga agagtcggta aaacgtggta tgcctgttat cagagactgc cagcgttgtg
     7261 gtggtcgtgg ctgtgaaaga ctaccatcaa cggaggcatt taatgccata tgcaaagtga
     7321 cgagtgctat cacgcttgat acgtggaaaa aatcagtgaa acgcttttac gatacgttgg
     7381 tggttcggtt tgacattgaa gaggcatggg cggagcggca gttaaagagg gtaacgcgat
     7441 agtgttgttg atttttcccg aatctgtggt aaatttgctc taacgatggg cgttttatgc
     7501 ctgacgttag aagatttttt acaccccgcc gcctggcggg ttttttatga ctgaaatcgc
     7561 gtcagtatag taaacgcgct ggtggcggtg aatacctgtc tttcagcttg ctggcttttt
     7621 cgacaagagt tattggtgtg tcacgttaac cggaaaaggg aaaaagacat gctaaaacag
     7681 caggatatga cagaaaccgc cagagtggtg tttaatgaat taagcgttac cgaaccggcg
     7741 acagtcgggg agatagcgca gaatacttac ctttcacgcg aacgctgcca gttaatactg
     7801 acccagctgg ttatggcgga tctggcagac tatcagttcg gttgttacag acgccttccg
     7861 cagtgaaggc ttttttattt gtggtaaatg ggcggctggt gggtgttagg ggcacccacc
     7921 agccatctgc tcatgcgttg ggttcacaag caaacctcag gcccactgct ttgcgcaaaa
     7981 gcagaatgag cctatcagag acaggcttaa tgatccatgc ttaatactgt aaaaatatcc
     8041 agttgtgagt taatcaacgc cgactgcctg gaatttatcc ggtcgttacc cgaaaattct
     8101 gttgacctga tagtcacgga cccgccgtac tttaaagtga agcctgaggg ctgggataac
     8161 cagtggaagg gcgacgatga ttacctgaag tggctggacc agtgtctggc gcagttctgg
     8221 cgggtgctga aacctgccgg aagtctttac ctgttctgtg gtcatcgcct ggcatctgat
     8281 atcgaaatca tgatgcgtga acgcttcagt gtgctgaacc atattatctg ggcgaagccg
     8341 tccggacgct ggaacggatg caacaaggaa agcctgcggg cgtatttccc cgccacagag
     8401 cgcattctgt tcgcggaaca ttatcagggg ccgtatcgtc cgaaagatgc cgggtatgcg
     8461 gcgaagggca gtgcactgaa acagcatgtg atggccccgc tgatttctta ctttcgtgat
     8521 gcgcgcgcgg ccctggggat aacggcaaaa cagattgcag atgccacagg aaagaaaaac
     8581 atggtgtcgc actggttcag tgccagtcag tggcagctac cgaacgaaag cgattatctg
     8641 aaattacagt cgctgtttgc ccgggtggca gaagagaaac atcagcgcgg tgaactggaa
     8701 aagccccacc accagctggt ggatacgtat acgtcactga accggcagta tgtggagctg
     8761 cagagtgaat ataagcatct gcggcggtat tttggtgtga cggcgcaggt gccgtacacg
     8821 gatgtgtgga cacataaacc ggtgcagttc tatcccggga aacatccgtg cgaaaaaccg
     8881 gcagaaatgc tgcagcagat aatcagcgca agcagtcgtc cgggtgacct ggttgcagat
     8941 ttttttatgg gctcaggttc aacggtaaaa gcggcactgg cgctcgggcg tcgtgcgatt
     9001 ggcgttgagc tggagaccgg acgttttgag cagacagtca gggaagttca ggatttaatc
     9061 gtttgaaacg gatgagattg cagaattaat tacgcaccat tattattctg ctcccggccc
     9121 tttagctcag tggtgagagc gagcgactca taatcgccag gtcgctggtt caaatccagc
     9181 aagggccacc atatcacata ccaccattag ctcatcggga tagagcgcca gccttcgaag
     9241 ctggttgcgc ggggttcgag ttctcgatgg cggtccattt atcggtattc tgcgttgtta
     9301 gctcagccgg acagagcaat tgccttctaa gcagctgtgg ttgcactcct gttgtttctg
     9361 gtggtgatgg tggacttcag cagccggata atgtcggtgc tgtctgatgg tgttttggtg
     9421 gcgggtgtgt ggttgttgct ttcccgttgc tgaaaaagaa agcatcaggc gattagcagg
     9481 gtatcagtta cccgttgaaa tttttaaata cctcacaatt ccacagcttg atgattgtct
     9541 ggctgccgga gaatttgtta aaaattacat cgcatggtga atccccctca gcggcggggc
     9601 atctggcaaa gtgtatgatc cagagaacat gcaaattcag tagacaggct gaatttaccg
     9661 ggaggcccct ggcaccatgc gacagacaga aattaggcta tacttcagcc cctctccgga
     9721 ggggcttttc tgtgcaggat gtgtcacagt ttcctgaatt ctgagtactg tcctgttact
     9781 cagggtgcta tattttctga cgtgatgaaa gtctgccgga aggcggaacg tatcggaaat
     9841 gacccagtag agaaaacgtt gactcagata ccgatgctga gttaccggga aaccggcatc
     9901 acatgaccgc tatccttcca ggctcgctcc ggcgggcctt tttactgcag aaaacagttt
     9961 tcccgtaaaa tgccacgttg ctcataattc aggctggcga ttattgtctg gccggcggga
    10021 agtttgttaa aaaatttcgc atggtgaatc cccctgtgcg gaggggtaat cagcgagtag
    10081 gtatatggga taatcgcgga ttcaggtgct ggtactgaat tcaccgggag gcacccggca
    10141 ccatgcaatg gcacatagcg ccactctcca gcccctctcc ggaggggctg tttatattga
    10201 ttttgtcaga tgtgagtaaa ctccttatgg actttgttgt tttag
//
LOCUS       DAJVSY010000150        10226 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.152, whole genome shotgun sequence.
ACCESSION   DAJVSY010000150 DAJVSY010000000
VERSION     DAJVSY010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10226
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.152"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            314..466
                     /gene="hokA"
                     /locus_tag="OQQ19_003380"
     CDS             314..466
                     /gene="hokA"
                     /locus_tag="OQQ19_003380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001135724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokA"
                     /protein_id="HCS1804880.1"
                     /translation="MPQKYGLLSLIVICFTLLFFTWMVRDSLCELHIKQGRYELAAFL
                     ACNLKE"
     gene            complement(654..866)
                     /gene="cspA"
                     /locus_tag="OQQ19_003381"
     CDS             complement(654..866)
                     /gene="cspA"
                     /locus_tag="OQQ19_003381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone/antiterminator CspA"
                     /protein_id="HCS1804881.1"
                     /translation="MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKS
                     LDEGQKVSFTIESGAKGPAAGNVTSL"
     gene            complement(1147..1437)
                     /locus_tag="OQQ19_003382"
     CDS             complement(1147..1437)
                     /locus_tag="OQQ19_003382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator"
                     /protein_id="HCS1804882.1"
                     /translation="MEYKDPMHELLSSLEQIVFKDETQKITLTHRTTSCTEIEQLRKG
                     TGLKIDDFARVLGISVAMVKEWESRRVKPSSAELKLMRLIQANPALSKQLME"
     gene            1870..2580
                     /locus_tag="OQQ19_003383"
     CDS             1870..2580
                     /locus_tag="OQQ19_003383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3053 domain-containing protein"
                     /protein_id="HCS1804883.1"
                     /translation="MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNT
                     VMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQ
                     DYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQTDDLKPVFDQAFTKVVTTP
                     ADALQPLIPVAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLP
                     AQHQAFNQAWTTAVTATQ"
     gene            complement(2630..3604)
                     /gene="ghrB"
                     /locus_tag="OQQ19_003384"
     CDS             complement(2630..3604)
                     /gene="ghrB"
                     /locus_tag="OQQ19_003384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312465.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase GhrB"
                     /protein_id="HCS1804884.1"
                     /translation="MKPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTVEQNAAIFA
                     EAEGLLGSNENVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTET
                     VADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMAL
                     AQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLF
                     GAEQFAKMKPSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLS
                     MANVVAVPHIGSATHETRYGMAACAVDNLIDALQGKVEKNCVNPHVAD"
     gene            complement(3708..4367)
                     /locus_tag="OQQ19_003385"
     CDS             complement(3708..4367)
                     /locus_tag="OQQ19_003385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family lipoprotein"
                     /protein_id="HCS1804885.1"
                     /translation="MKKRVYLIAAVVSGALAVSGCTTTPYTGEREAGKSAIGAGLDSL
                     VGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRS
                     GDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDL
                     NMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSP
                     L"
     gene            4520..6853
                     /gene="bisC"
                     /locus_tag="OQQ19_003386"
     CDS             4520..6853
                     /gene="bisC"
                     /locus_tag="OQQ19_003386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418007.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin sulfoxide reductase"
                     /protein_id="HCS1804886.1"
                     /translation="MANSSSRYSVLTAAHWGPMLVETDGETVFSSRGALATGMENSLQ
                     SAVRDQVHSNTRVRFPMVRKGFLASPENPQGIRGQDEFVHVSWDEALDLIHQQHKRIR
                     EAYGPASIFAGSYGWRSNGVLHKASTLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVV
                     GGSEVYQQQTSWPLVLEHSDVVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKL
                     ICIDPMRSETVDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYA
                     VFASYLLGESDGIAKTAEWAAGICGVHAAKIRELAALFHQNTTMLMAGWGMQRQQLGE
                     QKHWMIVTLAAMLGQIGTPGGGFGLSYHFANGGNPTRCSAVLSSMQGSLPGGSDAVDK
                     IPVARIVEALENPGCAYQHNGMNRLFPDIRFIWWAGGANFTHHQDTNRLIRAWQKPEL
                     VVISECFWTAAAKHADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDF
                     DVFAELSERWEKGGYARFTEGKSELQWLETFYNVARQRGASQQVELPPFAEFWQANQL
                     IEMPENPDSERFIRFADFCRDPQAHPLKTASGKIEIFSQRIADYAYPDCPGHPMWLEP
                     DEWQGNAEPEQLQVLSAHPAHRLHSQLNYSSLRELYAVANREPVTIHPDDALARGIQD
                     GDTVRLWNARGQILAGVVISEGIKPGVICIHEGAWPDLDLTADGICKNGAVNVLTKDL
                     PSSRLGNGCAGNTALAWLEKYNGPELTLTAFEPPASS"
     gene            complement(6822..7262)
                     /locus_tag="OQQ19_003387"
     CDS             complement(6822..7262)
                     /locus_tag="OQQ19_003387"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS1804887.1"
                     /translation="MIREAQRSELPAILELWLESTTWGHPFIKANYWRDCIPLVRDAY
                     LANAQNWVWEEDSKLLGFVSIMEGRFLAAMFVAPKAVRRGIGKALMQYVQQRHPHLML
                     EVYQKNQPAINFYQAQGFHIVDCAWQDETQLPTWIMSWPVVQTL"
     gene            complement(7259..7822)
                     /gene="tag"
                     /locus_tag="OQQ19_003388"
     CDS             complement(7259..7822)
                     /gene="tag"
                     /locus_tag="OQQ19_003388"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HCS1804888.1"
                     /translation="MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGL
                     SWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAY
                     LQMEQNGEPFADFVWSFVNHQPQVTQATTLSEIPTSTPASDALSKALKKRGFKFVGTT
                     ICYSFMQACGLVNDHVVGCCCYPGNKP"
     gene            7980..8678
                     /locus_tag="OQQ19_003389"
     CDS             7980..8678
                     /locus_tag="OQQ19_003389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709326.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HCS1804889.1"
                     /translation="MIIKKSGGRWQLSLLASVVISAFFLNTAYAWQQEYIVDTQPGHS
                     TERYTWDSDHQPDYNDILSQRIQSSQRALGLEVNLAEETPVDVTSSMSMGWNFPLYEQ
                     VTTGPVAALHYDGTTTSMYNEFGDSTTTLTDPLWHASVSSLGWRVDSRLGDLRPWAQI
                     SYNQQFGENIWKAQSGLSRMTATNQNGNWLDVTVGADMLLNQNIAAYAALTQAENTTN
                     NSDYLYTMGVSARF"
     gene            8906..10108
                     /locus_tag="OQQ19_003390"
     CDS             8906..10108
                     /locus_tag="OQQ19_003390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1804890.1"
                     /translation="MTPSNYQRTRWLTLIGTIITQFALGSVYTWSLFNGALSAKLDAP
                     VSQVAFSFGLLSLGLAISSSVAGKLQERFGVKRVTMASGILLGLGFFLTAHSDNLMML
                     WLSAGVLVGLADGAGYLLTLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDTQLLE
                     TVGLEKTFVIWGAIALVMIVFGATLMKDAPKQEVKTSNGVVEKDYTLAESMRKPQYWM
                     LAVMFLTACMSGLYVIGVAKDIAQSLAHLDVVSAANAVTVISIANLSGRLVLGILSDK
                     IARIRVITIGQVISLVGMAALLFAPLNAVTFFAAIACVAFNFGGTITVFPSLVSEFFG
                     LNNLAKNYGVIYLGFGIGSIFGSIIASLFGGFYVTFYVIFALLILSLALSTTIRQPEQ
                     KMLREAHI"
BASE COUNT         2466 a         2461 c         2616 g         2683 t
ORIGIN      
        1 acgccttcag tagcggagca ggaaggacat ctgatggaaa tggaagccac gcaagcacct
       61 taaaatcacc atcatacact aaatcagtaa gttggcagca ttaccagatt tttttaggat
      121 tatatcaagg agaagaaaca aacttattaa gctagaatag ctacgggtgc ttgagactgt
      181 ttgtctcagg tattcaccga aaggcagaca gagaaaagcc ccacctgact ataaatcaaa
      241 gtgaggctac cctatgcctg aacaccataa ggttagcctc ttactcgttg gaaatcaaca
      301 cagggggctg ggaatgccgc aaaaatacgg attactttca ttaatagtga tttgtttcac
      361 gcttttattt ttcacctgga tggtaagaga ttcactgtgt gaattgcata ttaaacaggg
      421 gcgttatgag ctggcggcat ttttagcctg caatttaaaa gagtaagagt cttcggcggg
      481 aaattattcc cgcctttctt acggcgttgc gcattctcat tgcacccaca tttattcttc
      541 acaaaaataa taatagattt tactacgcga tcgattattt atttcctgaa aaaaaataaa
      601 aaaaatcccc gccaaatggc agggatctta gattctgtgc ttttaagcag agattacagg
      661 ctggttacgt taccagctgc cgggccttta gcgccgcttt cgatggtgaa ggacactttc
      721 tgaccttcgt ccagagattt gtaaccatcg ttctggatag cagagaagtg tacgaacaca
      781 tctttagagc catcgtcagg agtgatgaag ccgaagcctt tgtcagcgtt gaaccatttt
      841 acgataccag tcattttacc ggacatagtg tattaccttt aataattaag tgtgcctttc
      901 ggcgatatgg cgtgctttac agattttgaa gcgttaaagg aatgtgcact acgaggggta
      961 tcaacgataa ctcttgaagg gacttgcctt actacactgc tttaatggtc tgtacgtcaa
     1021 accgttgatg tgcattaagc cacgcattgg cgggtgatgc aacaattatt tttcatattt
     1081 atgattaatc ggttggaaaa cggtcctgtc atcaggaccg taaacagcaa taaagtggat
     1141 aaaagtctat tccatcaact gcttacttaa tgccgggttg gcttgaatca aacgcatcaa
     1201 ttttagttcg gcacttgaag gcttcacgcg tctggattcc cattccttta ccatggcgac
     1261 tgatatgccc aaaacccggg cgaaatcatc gatttttaac cctgtccctt ttcgtaactg
     1321 ctcaatttcg gtacaggacg ttgttctgtg cgtcagggta attttctgcg tttcatcttt
     1381 aaaaacaatc tgttccaggc tgctcaacag ctcatgcatt ggatctttat attccattga
     1441 aaactcctca aatcacactg cgggatcgtg aattgcatcg aagctcatta agaatagtcg
     1501 ggaaaagcag acacagcggg gtgaagtcag ggcatgctct ggctatgatt cgattcagcc
     1561 agtcatttag cgtgacttat agccacctaa cgatctgata aatgccgata tatctcttac
     1621 cactcctgtt ttgtaaagat ttcgaaaatc taaagttctg cgaaggcgta aatctcgggc
     1681 tacaaaaaag caacggcaat atcatttttt aacaatgaaa caacaaatta accttgtttc
     1741 attttctcca tgattttacc aggaagatta cgtagaaagg gtatcctgca agcctgtcct
     1801 ggactatcct tgtcacgtca gacacgcgtg tgtcgttgtg cgcttttttt gggtgaaagg
     1861 agtaagaaaa tggcgacagg aaagtcctgc tctcgctggt ttgcgcctct tgcggcgtta
     1921 ttaatggtag ttagcctgag tgggtgtttt gataaagaag gcgatcagcg taaagcgttt
     1981 atcgacttcc tgcagaatac agtgatgcgt agcggtgaac gtctaccaac cctgactgcc
     2041 gatcagaaaa aacagtttgg tccttttgtc tctgattacg cgattctgta tggttattct
     2101 cagcaggtga atcaggcgat ggattccggt ctgcgcccgg tcgtagacag cgttaacgca
     2161 attcgcgtac cgcaggatta cgttacgcaa agcggtccgc tgcgtgaaat gaacggttcg
     2221 ctgggtgtgc tggcgcaaca actgcaaaat gcgaagttgc aggccgatgc tgcgcactct
     2281 gcgctaaaac agaccgatga tttgaaaccg gtctttgatc aggcattcac caaagtggta
     2341 acgacgccag ctgatgcatt gcaaccgttg attccggttg cacaaacttt cacgcaacaa
     2401 ctggtgatgg ttggagacta cattgctcaa caaggtactc aggtgagctt tgtagcaaat
     2461 ggtatccagt tcccgacttc gcagcaggca agtgaatata acaaactgat tgcgccgtta
     2521 ccggcacaac atcaggcgtt taatcaggcc tggactacag cagttactgc aacccaataa
     2581 agagtaaaag cccgagcgat tatcgggctt tacttcacgc agtcgcggct tagtccgcga
     2641 cgtgcggatt cacacagttc ttctcaacct ttccttgtaa cgcatcaatc aaattatcca
     2701 cggcacaggc ggccatgcca taacgcgtct catgggtggc agatccaata tgcggtactg
     2761 cgacgacgtt ggccattgag agcaacggcg aatctacgga cagtggctct tgttcgaaga
     2821 catccagccc ggcggcgtga atttcgcctt tctgcaatgc tgcgatcagt gcattttcgt
     2881 caaccaccgg gccacgtccg gcattaatga aaatggcgga gggtttcatt ttggcgaatt
     2941 gttctgcgcc aaacagatga tgcgtctcat cagttaacgg caggatcagg caaacgaaat
     3001 ctgactcttg taacagagta tccaaatcgc agtagcgggc gttgaagcgt tcttctgctt
     3061 ctttatggtg gcggcgcgcg ttatagagga tgggcatgtt gaagccaaag tgcgcacgtt
     3121 gtgccagcgc catgccgatc cgtcccatcc cgacaatgcc cagtgtttta tggtgaacgt
     3181 cagtgccgta ccagtccggg cctatgctcg cggtccattc gcctgctttt acccgttctg
     3241 ctacctccac aacccgacga gcggtagaca acaccagcgc catcagcgta tcggcgacgg
     3301 tttctgttaa tacggttggc gtgtgcatca gcagaatttt tcgggcggta agcgcatcga
     3361 catcaaaatt gtcatagccg acggagatcg ttgatgtggc acgcagtttc ggcatttttt
     3421 ccagcaatgc ggcatctaca ttctcgtttg aacccagtaa accttcagct tcggcaaaaa
     3481 ttgctgcatt ttgttcgacg gtttgtgggc tgaggtttgc cacctggtga acggtgaaat
     3541 gctcttgcag gcgttgcagt aaatcatcag gtaaggcttt gtagaggata acggacggct
     3601 tcatgcttct ctccattcac tgataaggcg ctcaccttag cctgaaatat gatgaaggaa
     3661 aactgaagaa tgccaggtga tttctgcatc acctggcatg aaagggatta cagcgggctt
     3721 aaggtaattt ctacacggcg gttttgcgcc ttaccttctg cggtgctgtt gctggcgatt
     3781 gggttagccg ggccaaggcc ctgagtacgg atgcggctgg cgtccacgcc ctgggtgatc
     3841 aacgcgctgg caacggaatc cgcacgctgc tgggagagac gcatgttcag gtcgtgaccc
     3901 cccgtgctgt cggtataacc aatcacgtta accgccgttt tcggatactc tttcagcacc
     3961 attgccacgc cggtcagggt gttagcgcct gccggtttca gggtcgcgct gctgctgtcg
     4021 aaggtcacat tgttcggcat attgaggata atgttatccc cgctgcgggt tacgctaaca
     4081 ccagtgccgc gcattttgtc acgcagcttc gcttcctgca catccatgta ataacccacg
     4141 ccgccgccca gagctgcgcc tgctgctgcg ccaatcagcg cgcctttacc gcgatctttc
     4201 ttcgaagaag agagcgcacc aatacccgcg cccacgagag agtccagacc tgcgccgata
     4261 gcagatttgc ctgcttcgcg ttcgccggtg taaggggtag ttgtgcagcc agataccgcc
     4321 agagcgccac tcactacggc ggcaataaga taaacacgtt tcttcattgt taatccttaa
     4381 taaccttttt attctttgcc acgggttccg tggcgggaga ttatgccgcg tgaacatgaa
     4441 gattattcct gggaatactc ggaaatttgt aagtaatatt taactgctca atacatctaa
     4501 cctttcagga gtcttcggtt tggccaactc atcctcacga tattccgttc tgactgccgc
     4561 ccactggggg cccatgctgg ttgaaaccga cggcgaaacc gtgtttagct cgcgtggcgc
     4621 gttagccaca ggaatggaaa actccttgca gagcgcggtt cgcgaccagg ttcacagcaa
     4681 tacgcgggta cgatttccaa tggtgcgcaa aggctttctc gcgtcaccgg aaaacccgca
     4741 aggcattcgt gggcaggatg aatttgttca cgtgagttgg gatgaggcgc tggatcttat
     4801 tcaccaacaa cataaacgca ttcgtgaggc ttatggtccg gcatcgattt ttgctggttc
     4861 ctacggctgg cgttcaaacg gcgtgctgca taaggcctcg acattattac aacgctatat
     4921 ggcgctggca ggcggttata ccgggcatct gggggattat tcgaccggtg cggcacaggc
     4981 gatcatgccg tatgtcgtgg gtggcagcga agtttatcaa cagcaaacca gttggccgct
     5041 ggtgctggaa catagcgatg tcgtggtgtt gtggagtgct aacccactca atacgctgaa
     5101 aattgcgtgg aatgcatctg atgagcaggg gctttcttac ttttccgcac tgcgtgacag
     5161 cgggaaaaag ctgatctgta ttgatccaat gcgatcggaa accgtcgatt tctttggcga
     5221 taaaatggag tgggtggcac cgcacatggg caccgatgtt gcgctgatgc tggggatcgc
     5281 ccatacgctg gtggaaaatg gttggcacga cgaagcgttt ctggcgcgtt gcaccacagg
     5341 ttatgccgtc ttcgcctctt atttgctggg cgagagtgac ggaatagcca aaaccgccga
     5401 atgggcggca gggatttgtg gggttcacgc agcgaaaatt cgcgagttgg cggctctttt
     5461 ccaccaaaac acgaccatgc tgatggctgg ctggggaatg cagcgccaac agcttggtga
     5521 gcaaaaacac tggatgatcg tcacgctggc ggcaatgttg gggcaaatcg gcacacccgg
     5581 cggcggtttt ggtctttctt atcattttgc caatggtggt aatcccacgc ggtgttctgc
     5641 ggtgctctct tccatgcagg gtagcttgcc gggtggcagc gatgcggtag ataaaatccc
     5701 tgttgcccgt attgttgaag cactggaaaa ccctggctgc gcataccaac acaatggcat
     5761 gaatcgcctc ttcccggata ttcgctttat ctggtgggcg ggtggcgcca acttcaccca
     5821 tcatcaggac actaatcgcc tgatacgagc ttggcaaaaa ccggagctgg tagttatctc
     5881 cgaatgcttc tggacggcgg cggcaaaaca cgcggatatc gttctgcctg cgactacctc
     5941 ttttgagcgt aatgatctca ccatgaccgg cgattacagt aatcagcatc tggtgccgat
     6001 gaagcaagtg gtgccgccac gctatgaagc gcgtaatgat tttgatgttt ttgccgagtt
     6061 aagtgaacgc tgggagaagg gcggttatgc acgttttacg gaaggaaaaa gtgagttgca
     6121 atggctggaa acgttttata acgttgcccg acagcgcggg gcaagccagc aggttgaatt
     6181 gccgccattt gctgagttct ggcaagccaa tcagttaatt gagatgccgg aaaacccgga
     6241 cagcgagcgg tttattcgct tcgctgattt ttgccgcgat ccgcaggcgc atccattaaa
     6301 aaccgccagc ggtaagattg aaatcttctc gcagcgtatt gccgattacg cttatccgga
     6361 ttgcccgggg catccaatgt ggctggagcc ggacgaatgg cagggcaatg ccgaaccgga
     6421 acagttacag gtactttctg ctcatccggc gcatcgtctg cacagccagc tgaattacag
     6481 ttctctgcgc gaattgtatg cggtggcaaa tcgtgagcct gtcaccattc atcctgacga
     6541 tgccctggcg cgcggcattc aagatggcga tactgttcgg ctgtggaacg cacgcgggca
     6601 aattcttgcc ggagtggtca ttagcgaggg aattaaacct ggcgtgattt gtattcacga
     6661 aggggcatgg ccggatttgg atttaaccgc tgacggtatt tgtaaaaacg gcgcagtcaa
     6721 cgtgctgacc aaagatctcc ccagctcgcg gctggggaat ggctgtgcgg gtaatacggc
     6781 gctggcatgg ctggaaaaat acaacggtcc ggaactgaca cttacagcgt ttgaaccacc
     6841 ggccagctca taatccaggt gggtagttgg gtttcatcct gccatgcgca atcgacaatg
     6901 tgaaaaccct gcgcctggta aaaatttatc gccggttgat ttttttgata aacctccagc
     6961 atcaggtggg gatggcgctg ctgcacatat tgcatcagcg ccttaccaat accgcgcctg
     7021 acggccttcg gtgcgacaaa catcgctgcc agaaatcggc cttccataat gctgacaaaa
     7081 ccgagaagct tactgtcttc ttcccagacc cagttttgcg cattggcaag atacgcatcc
     7141 cgcaccagcg gaatgcaatc acgccagtaa ttcgctttta taaagggatg tccccaggtt
     7201 gtactttcca gccacagttc gaggatcgcg gggagttctg aacgttgcgc ttcccgaatc
     7261 atggtttatt tcccggatag caacagcagc caaccacatg atcattcacc agcccacatg
     7321 cctgcataaa ggagtaacag attgtggtac cgacaaactt aaaaccacgt tttttcagtg
     7381 ctttagatag ggcgtcggag gcgggcgtag atgtggggat ttcgctcaac gttgtggctt
     7441 gtgtcacctg tggctgatga tttacaaacg accagacaaa gtcggcaaac ggttcgccgt
     7501 tctgttccat ttgcaggtac gcccgcgcat taccaataat tgcctgaatt ttcccgcgat
     7561 ggcggataat cccggcgtcc tgtaccagtc tttcgacatc ctcttcctgc attgctgcga
     7621 ccttcaccgg atcgaactga tgaaagcagg cgcgatagtt ttcgcgtttt ttgaggacgg
     7681 tgatccacga taacccagcc tgctgccctt caaggcagat catttcgaac agttttttac
     7741 tgtcagtttc aggcacgccc cactcattat catggtaggc aatataaagc gggtcctgac
     7801 tcacccagcc gcaacgttcc atactttccc tcgctatgta cccgatcgta aaaatttcag
     7861 ccgcttttct tgacgcatcg gtgaaaaagt caatatttaa tacagggcta ctatgcccga
     7921 tatccttcat acaatgacaa taatattgcc gaattcggct cttccctgga gtcgtgttaa
     7981 tgatcataaa aaaaagcggt ggtcgctggc agctaagcct gctggcgagc gtggtaatca
     8041 gcgccttttt tctcaacaca gcttacgcct ggcaacaaga atatatcgtt gatacgcaac
     8101 ccggacattc cacagagcgt tacacctggg atagtgatca tcaacctgat tacaacgata
     8161 ttttgtcgca acgtattcaa agtagccaaa gggcgctggg actggaagtc aatctggcgg
     8221 aagaaactcc tgtggatgtg accagcagta tgagtatggg ctggaatttt cctttatatg
     8281 aacaggttac aaccggcccg gtcgcggcat tacattacga tggcacaacc acctcgatgt
     8341 ataacgagtt tggcgacagt actaccacgc tgaccgatcc gttatggcat gccagcgtga
     8401 gtagcttagg ctggcgtgtt gactcccggc ttggcgatct ccgaccctgg gcgcaaatca
     8461 gctataacca gcaatttggc gagaatatct ggaaggcgca atcaggcctg agccggatga
     8521 cggcgacaaa ccagaacggc aactggctgg atgtcaccgt aggcgctgat atgttgctca
     8581 atcaaaatat tgccgcctat gccgcgctaa ctcaggcaga aaataccact aataatagcg
     8641 actatctgta tacgatgggg gttagcgcca gattttaacg taacagtcac aattgaaacc
     8701 attgaataac aatagttgtg gtgatagtgg gtgctaactt acaaataata aatttggtga
     8761 ataattgtcg cgtcattcat tcctgaacta aggcatttca ttccgttctg atggcatttc
     8821 atgccgtttt tccccaggca taaaatgcac ttcgttatgg ttgtcggcag agatttttcc
     8881 tttttattac tgcaggaata ctgccatgac accttcaaat tatcagcgta cccgctggct
     8941 gacactcatc ggtactatca ttacccagtt tgcgctgggg tcggtttata cctggagcct
     9001 gtttaatggc gcgctttctg ccaagctgga tgcgccggta agccaggtcg ctttctcttt
     9061 cggcttgtta agtctggggc tggcaatttc atcttctgtt gcggggaaat tacaggaacg
     9121 ttttggcgtt aaacgcgtca ctatggcttc cggcattttg ctaggattag gcttcttcct
     9181 gacagcgcat tctgacaacc tgatgatgct gtggttaagc gccggtgtgc tggtcggtct
     9241 ggcggatggc gcgggttacc tgctgacgct ctctaactgc gtgaagtggt tcccggagcg
     9301 taaaggtctg atctccgcgt tcgctatcgg ttcttatggt cttggtagcc tgggtttcaa
     9361 atttatcgac acgcagctgc tggaaacggt gggtctggaa aaaacatttg tgatttgggg
     9421 agcgattgcg ctggtgatga ttgttttcgg cgcaacgtta atgaaagacg caccaaaaca
     9481 ggaagtgaaa accagcaatg gtgtggtgga gaaagattac acgctggcag agtcgatgcg
     9541 taaaccgcag tactggatgt tagcggtaat gttcctgact gcctgcatga gcggcctgta
     9601 cgtgattggg gtagcgaaag atatcgccca aagtctggca caccttgatg tggtttccgc
     9661 agccaatgca gtaacggtta tttccatcgc taacctttca ggtcgtctgg tgctgggcat
     9721 tctgtctgac aaaattgccc gtatccgtgt tatcaccatt ggtcaggtga tttcgctggt
     9781 gggtatggcg gccctgctgt ttgcaccatt aaatgcagtg acgttctttg cagcgattgc
     9841 ctgcgtggca tttaactttg gcggcactat taccgtcttt ccatcactgg tcagtgagtt
     9901 cttcggcctc aataacctgg cgaaaaacta cggtgtgatt tacctcggtt tcggtatcgg
     9961 tagcattttt ggttcgatta tcgcctcact gtttggcggt ttctatgtga ccttctacgt
    10021 gattttcgcc ctgctgattc tgtcattggc gctttctacg acgattcgtc agccagagca
    10081 gaaaatgttg cgtgaggcgc atatttagaa atatgttgct actgaaataa atacgaggag
    10141 ggagacttca aagtctccct tttttatgga cgcatattaa aagaacaata atattcatac
    10201 cacaaatata ttttatttat atatta
//
LOCUS       DAJVSY010000151        10146 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.153, whole genome shotgun sequence.
ACCESSION   DAJVSY010000151 DAJVSY010000000
VERSION     DAJVSY010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10146
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.153"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..236
                     /locus_tag="OQQ19_003391"
     CDS             <1..236
                     /locus_tag="OQQ19_003391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS1804891.1"
                     /translation="TLVEEDKALLIGNGLKLRLLDENASPYTFNKYAEYADFTSDMLV
                     YEKTYTAELSSIAGTPIEAGPFDTVVLFKINYN"
     gene            388..1434
                     /locus_tag="OQQ19_003392"
     CDS             388..1434
                     /locus_tag="OQQ19_003392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415243.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB family transcriptional regulator"
                     /protein_id="HCS1804892.1"
                     /translation="MPVLQWGMLCVLSLLLSIGFLAVHLPAALLLGPMIAGIIFSMRG
                     ITLQLPRSAFLAAQAILGCMIAQNLTGSILTTLAANWPIVLAILLVTLLSSAIVGWLL
                     VRYSSLPGNTGAWGSSPGGAAAMVAMAQDYGADIRLVAFMQYLRVLFVAGAAVLVTCM
                     MLGDNAEAVNQQIVWFPPVSINLLLTILLAVVAGTAGCMLRLPSGTMLIPMLAGAVLQ
                     SGQLITIELPEWLLAMAYMAIGWRIGLGFDKQILLRALRPLPQILLSIFALLAICAGM
                     AWGLTRFMHIDFMTAYLATSPDGLDTVAVIAAGSNADMALIMAMQTLRLFSILLTGPA
                     IARFISTYAPKRSA"
     gene            complement(1431..2222)
                     /gene="nei"
                     /locus_tag="OQQ19_003393"
     CDS             complement(1431..2222)
                     /gene="nei"
                     /locus_tag="OQQ19_003393"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease VIII"
                     /protein_id="HCS1804893.1"
                     /translation="MPEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQH
                     VTHVGTRGKALLTHFSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTIL
                     LYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLD
                     QAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDE
                     NKHHGALFRFKVFHRDGELCERCGGIIEKTTLSSRPFYWCPGCQH"
     gene            complement(2258..2992)
                     /gene="pxpA"
                     /locus_tag="OQQ19_003394"
     CDS             complement(2258..2992)
                     /gene="pxpA"
                     /locus_tag="OQQ19_003394"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HCS1804894.1"
                     /translation="MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQTMQACV
                     REAIKNGVAIGAHPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVMRH
                     VKPHGMLYNQAAKEAQLADAIARAVYACDPALVLVGLAGSELIRAGKQYGLTTREEVF
                     ADRGYQADGSLVPRSQPGALIENEEQALAQTLEMVQHGRVKSITGEWATVTAQTVCLH
                     GDGEHALAFARRLRSTFAEKEIVVAA"
     gene            complement(2982..3914)
                     /gene="pxpC"
                     /locus_tag="OQQ19_003395"
     CDS             complement(2982..3914)
                     /gene="pxpC"
                     /locus_tag="OQQ19_003395"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpC"
                     /protein_id="HCS1804895.1"
                     /translation="MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLV
                     GNDANAPALEITLGQLTVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTL
                     KRPQHGMRSYLAVAGGIDVPPVMGSCSTDLNVGIGGLEGRLLKDGDRLPIGKSKRDFM
                     EAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSPQSNRMGYRLQGQILKR
                     TTDRELLSHGLLPGVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQ
                     PIHFVQCSLEEALKARQDQQRYFEQLAWRLHNEN"
     gene            complement(3908..4564)
                     /gene="pxpB"
                     /locus_tag="OQQ19_003396"
     CDS             complement(3908..4564)
                     /gene="pxpB"
                     /locus_tag="OQQ19_003396"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HCS1804896.1"
                     /translation="MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVV
                     EAIPGMNNITVILRNPESLALDAIELLQRWWEESEALEPESRFIEIPVVYGGAGGPDL
                     AVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA
                     GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC
                     "
     gene            complement(4587..5330)
                     /gene="ybgI"
                     /locus_tag="OQQ19_003397"
     CDS             complement(4587..5330)
                     /gene="ybgI"
                     /locus_tag="OQQ19_003397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000798886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radiation resistance protein YbgI"
                     /protein_id="HCS1804897.1"
                     /translation="MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTA
                     SQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDA
                     HPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDT
                     GPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHAT
                     ERGGIRALSEWLNENTDLDVTFIDIPNPA"
     gene            5601..7082
                     /gene="dtpD"
                     /locus_tag="OQQ19_003398"
     CDS             5601..7082
                     /gene="dtpD"
                     /locus_tag="OQQ19_003398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide permease DtpD"
                     /protein_id="HCS1804898.1"
                     /translation="MNKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYND
                     THAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSF
                     LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGSFSLMYAAGNVGSIIAPIACGY
                     AQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV
                     LLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFF
                     SMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKE
                     SVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAEL
                     FIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINY
                     SINAYIEVFDQITWGALACVGLVLMIWLYQALKFRNRALALES"
     gene            complement(7124..8542)
                     /gene="phrB"
                     /locus_tag="OQQ19_003399"
     CDS             complement(7124..8542)
                     /gene="phrB"
                     /locus_tag="OQQ19_003399"
                     /EC_number="4.1.99.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HCS1804899.1"
                     /translation="MTTHLVWFRQDLRLHDNLALAAACSNSSARVLALYIATPRQWAT
                     HNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFY
                     NYQYEVNERARDVEVERALRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLK
                     RLREGMPECVAAPKVRSSGSIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQN
                     GAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLSEL
                     IWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL
                     NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD
                     AAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQP
                     IVDHKEARLRTLAAYEEARKGA"
     gene            complement(8539..9048)
                     /locus_tag="OQQ19_003400"
     CDS             complement(8539..9048)
                     /locus_tag="OQQ19_003400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbgA family protein"
                     /protein_id="HCS1804900.1"
                     /translation="MNLQRFDDSTLIRIFALHELHRLKEHGLTRGALLDYHSRYKLVF
                     LAHSQPEYRKLGPFVADIHQWQNLDDYYNQYRQRVVVLLSHPANPRDHTNVLMHVQGY
                     FRPHIDSTERQQLAALIDSYRRGEQPLLAPLMRIKHYMALYPDAWLSGQRYFELWPRV
                     INLRHSGVL"
     gene            complement(9333..9707)
                     /locus_tag="OQQ19_003401"
     CDS             complement(9333..9707)
                     /locus_tag="OQQ19_003401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000494465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804901.1"
                     /translation="MFTKLSIAILLAFSAYVHAETSAPIFFEDVGSIDSWFSIKYQKY
                     ENVKDEQYPEILIYYGVKGSGINRVDGWFFSCAKAGRTCSLIFMADFGESRYFKPAKI
                     AMNKNNLIIRTSDVEIAFKITK"
     gene            complement(9692..>10146)
                     /locus_tag="OQQ19_003402"
     CDS             complement(9692..>10146)
                     /locus_tag="OQQ19_003402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000171008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HCS1804902.1"
                     /translation="LGLIDKPAPVFNRDLNSDPYYLAVNNCYSYALNRYGNPGSRIFG
                     GGGLQPGELSGKEFSKLTCGSIFEASKNDGAKDLDNGSCPSGYHKAQLFIRPHNFIGM
                     GGDYHWYRQDANGEWSDKQGVGAIRFRGKDPFPPIDYPEKCGTIFLPN"
BASE COUNT         2366 a         2753 c         2437 g         2590 t
ORIGIN      
        1 aaacgttggt tgaagaagat aaagcattgt tgattggtaa tggtctgaag ctacgtttgc
       61 tggatgaaaa cgcctcgcct tataccttca ataaatatgc tgaatacgcc gatttcacca
      121 gcgacatgtt ggtctacgaa aaaacctata cagctgaact ttcgtccatt gcaggtaccc
      181 ccatcgaggc tgggcccttc gatacagtgg tgctttttaa aattaactat aactgatttg
      241 ccatgatgcc ctttgcagcc ggaaagggca tctctttcag aaaattgctg attttcctct
      301 tttccttgat tactgttatt ttttcctggc ccggctttct ttatgctgta tcgatacacc
      361 aaagagaaaa taatgaggga gcgaaggatg ccagttttgc agtggggaat gttatgtgtg
      421 ctatcacttc tcctttctat tggtttcctc gcggtacatc tcccggcggc gctattactt
      481 gggccgatga tcgccgggat catcttcagt atgcgcggaa ttactctgca acttccccgc
      541 tccgcttttc tcgccgcgca ggccattctt ggctgcatga ttgcgcaaaa cctcactggt
      601 tcgattctca ccacgctggc cgccaactgg ccgatcgtgc ttgctatttt actggtgacg
      661 ctgctttcca gcgccatcgt gggttggtta ttggtgcgct atagctcact gcctggaaat
      721 accggtgcct ggggttcttc tccaggcggc gcagcggcaa tggtcgctat ggcgcaagat
      781 tacggcgcag atattcgcct ggtggcgttt atgcaatatc tgcgagtgct gttcgtcgcg
      841 ggggccgctg ttctggtcac ctgcatgatg ctgggtgata acgctgaagc ggttaaccag
      901 caaatcgtct ggttcccgcc agtgagcatt aatctcctgc ttacgatttt gctcgcagtc
      961 gttgccggta cggcgggatg catgctgcgt cttccttccg gcacgatgct catcccgatg
     1021 ctggcgggcg cagtgctcca gtctggtcag ctcatcacca tcgaactacc ggaatggctg
     1081 ctggcgatgg cgtatatggc aattggctgg cggattggtc ttggtttcga taaacaaatc
     1141 ttactgcggg cactacgccc actaccgcaa atcctgctgt cgatttttgc tctgctggct
     1201 atttgtgcag gtatggcgtg gggactgacc cggtttatgc atattgattt tatgactgcc
     1261 tacctcgcca ccagtcccga cgggcttgat accgtggcgg tcatcgccgc agggagcaat
     1321 gccgatatgg cgcttattat ggcgatgcaa accctgcgcc tgttcagtat tttgctgacg
     1381 gggccagcca ttgcgcggtt tatttcaacc tatgcgccga agcggtcggc ctagtgctgg
     1441 cagcctggac accagtaaaa cgggcgcgag gacaacgtgg ttttctcaat gatgccgcca
     1501 cagcgttcgc acagttcgcc atcacgatga aaaaccttaa agcgaaacag cgccccatga
     1561 tgcttattct catccacctg cccccgcgta gcgtaagaaa accgaggaat ctccagtaac
     1621 gcgtgtgcga gtgcatccag ttgcgccgca ttgagatctt tcgctttatg atttccagtc
     1681 aacccaacct gccagaggat ctccacccgc aaataattgc caagcccagc cagaaacgcc
     1741 tgatcgagca gtaatcctgc aaactgacgg ttacgaaagc gcggtgacaa taaccgttcc
     1801 tttaccacct ccggcgtcag attcggatcc agcacatcgg gaccaacgcg ttgtaaaaac
     1861 ggatgcgtgg tcagttgttc cggcctcaac atctcaatat ccgaggcgct ataaagcaga
     1921 atggttttgt cagccgtttg cagttttacc cgcaatactc gcgtggtctg cggctcttcg
     1981 ccggtatcaa ccacgcgcca gacgccgtaa agctgattat ggctgtagag cgttaagtcg
     2041 ttggaaaaat gagttaacaa cgccttacca cgcgttccca catgggtaac gtgttgaccg
     2101 ataagttgtg attgataagt ttttaactgc gggaaggcaa accagacatc agttagtggt
     2161 ttgcctttga tcgccgcctc caggttatcc gctgcacggc ggatctccgg gccttcaggc
     2221 atggtgatat ccttttttca ttctttatta atcggggtta tgctgcgaca acaatctcct
     2281 tttcggcaaa tgtagagcgt agtcggcggg cgaacgccag tgcgtgctcg ccgtcgccat
     2341 gcaggcagac tgtttgcgcc gtgaccgttg cccattcgcc ggtgatactt ttgactctgc
     2401 cgtgttgcac catctctagc gtttgcgcca gcgcctgttc ttcgttttca atcaacgcgc
     2461 ctggctgact tcgcggcacc agcgagccgt cagcctgata accgcgatcg gcaaacactt
     2521 cctcgcgcgt tgtcaggcca tattgcttgc ctgcacgaat cagctcgctt cctgccagcc
     2581 caacgagaac caatgctgga tcgcaagcgt ataccgctct ggcgatggcg tctgccagtt
     2641 gtgcttcttt cgccgcctgg ttgtacaaca tgccgtgcgg tttgacatga cgcattacgc
     2701 cgccttgcgc acgggcaatc gttgccagcg cgccaatttg atacagcgtc tgggcgtaaa
     2761 cggtttctgg cggcagctgc atggcgctgc gaccaaaatt ttccctgtcg ggaaaactcg
     2821 ggtgagcgcc aatcgcgaca ccatttttta ttgcttcacg cacgcaagcc tgcatggttt
     2881 gggcatcgcc tgcatgaaat ccacaagcaa tattggcaga ggaaaccagc gttaatagct
     2941 ctgcgtcgct ggcgcagcct tcgcccagat cggcgttcag gtcaattttc attgtgtagc
     3001 cgccacgcta attgttcgaa ataacgttgt tgatcttgcc gcgctttcag tgcctcttcc
     3061 agtgaacact ggacaaaatg aatcggctga ccgagcggaa tttgcgccag atggtacata
     3121 tcagcctcaa tgatacaggc aatacgcggg taaccaccgg tggtctgtgc gtcgttcatc
     3181 aacacaatcg gctgcccgtt atgcggcacc tgcaccacac ccggtaacaa accgtgagat
     3241 aacagttcgc gatcggtggt gcgttttaaa atttgcccct gtaagcgata gcccatgcgg
     3301 ttactttgcg ggctaagctg ccagggtgaa cgccagaatg catcctgcga ggcgcgatcg
     3361 aactcatgat attccggccc cggcaaggcg cgaatgcggt tgccccacag cagctgttta
     3421 acgccctgcg cttccataaa atcacgcttc gatttgccaa tcgggagtcg gtcaccatcc
     3481 ttcagtaaac ggccttccag cccgccaatc cccacgttga gatcggtgct gcatgacccc
     3541 attaccggcg gaacatcaat accacccgcg accgccagat aactgcgcat gccgtgctgc
     3601 gggcgtttaa gcgttaaacg ctggcctgct ttcatcggca agcgccagcc ggtccagacg
     3661 gcgttatcat ccagccgcgc ttcgcaaccg gcacccgtca gagcaaacca cccatcagtt
     3721 tcgaactcaa ccgttaactg accgagcgtg atctccagcg cgggggcatt ggcgtcatta
     3781 cccaccagca ggttagcaat gcgtaacgca ggcatatcca gtgcgccgca gtggctgata
     3841 cccgactggc gaaaaccgtg acgaccgcca tcctgcacag tggtatacat gcccgcacga
     3901 ataatcttca gcatactccc tccttctgcg gtacaaagcg cacgctgtct cccggacgta
     3961 ataagatggg ttcgtcacgc gccggatcaa acaggctgag tgaggtatga ccaatcaact
     4021 gccagccacc cggcgttgcc agcggataaa caccagtctg cggcccgccg atcccgacag
     4081 aacctgccgg aacgagcaag cgcggttcag cgcgccgtgg cgtgtgtagt tgttccggca
     4141 aactcccgag atacgggaag cccggttgaa aacctaaaaa ccagaccacg tattccacgg
     4201 aggagtgcaa ttcaacaacc tgtttttcgc tcaacccgca atgcgccgcg accaccgcca
     4261 aatccggtcc gcctgcacca ccgtaaacca ccggaatttc aataaagcga gactcaggtt
     4321 ccagggcctc gctctcctcc caccagcgtt gcaaaagctc tatggcatcc agcgccagcg
     4381 actcaggatt acgcaaaatc accgtgatat tgttcatgcc gggaatggct tcaaccacat
     4441 tcggcatatc caccagacgc tgcgccagtc gccagatccg tttctggcta gccagcgtca
     4501 ccggcggttc cagttccagc actaccgccg tttcacctat cagataacaa cgcgctcgtt
     4561 gcactttcga tccctctgat tattcgttat gcaggattag gaatatcaat aaaggtcaca
     4621 tcaagatcgg tattttcatt cagccactcg ctcaatgcgc gaataccacc acgttcagtg
     4681 gcatggtgac ctgcagcata aaaatgcaat ccctgctcgc gggctgaatg aatggtctgt
     4741 tcagaaactt cgccagtaat aaaagcatcc acgccaaaac gcgcggcgct atcgataaaa
     4801 ctttgcccgc cgcccgtgca ccaggcgacg cgctggacca cctcaggtcc ggtatcgcca
     4861 caccataacg gcttacgtcc cagacgcgct tcaatccagg aggctagttc cagtcccggc
     4921 acaggcatgg tcagctctcc ccacggcacc aacggctcaa tttcgcccat gaccgtgatc
     4981 cccagtaacg ccgccagctg tgcgttattg cccagctcag gatgtgcgtc aagcggcaaa
     5041 tgccagccat acaggttgat atcattcgcc agcaacgttt ttaaacggtt acgcttcatt
     5101 ccgcgaatga ccggagactc tcctttccag aagtagccat gatgcacaat gaccgcatcc
     5161 gcgcccagac gcactgcctc atcgagcaaa gcctggctgg cggtgacacc ggtaacaatt
     5221 ttttgcaccg tctctttgcc ttccacctgc aaaccattcg gcgcgtaatc actaatcgcc
     5281 gcgctgttca gtttttcgtt aatcagttgt tccagttcgg tgtttttcat cttcgcgcct
     5341 tccgtattct gatagctaca ccgttaacat agcgttacct cgcctgttcg tcgatagcca
     5401 atcttttgac atattaataa acaaacccga cgccaaaaga cgcaaattgt ttatatcatc
     5461 acgcttcagc taatgtatat ttatgcaatc agacagcata ttgcataaat aatcagatct
     5521 gtatcaaagt tttaacttta aggaaacaca agcacgccgc gcaactatta cgtgacgttg
     5581 ccgtcaattg tggaattatt atgaataaac acgcatcaca gccgcgcgct atttactatg
     5641 tcgttgcgct gcaaatctgg gaatatttta gcttttacgg catgcgtgcc ctgctgattc
     5701 tctatctcac caatcaacta aaatacaacg atactcacgc ctacgagtta tttagcgcct
     5761 actgttcgct ggtgtatgtc acgccaatcc tcggtggctt tttggcggat aaagttctcg
     5821 gcaatcgcat ggcggtgatg ctgggggcgt tattgatggc gatcggtcat gtggtgttgg
     5881 gtgccagtga gatccatccg tcattcctct atctgtccct ggcgataatt gtttgtggct
     5941 atggtctgtt taaatccaat gtcagttgcc tgctcggcga gctgtatgag ccaaccgatc
     6001 cgcgtcgtga tggcagtttc tcgctgatgt atgcagcggg taacgtgggg tctattatcg
     6061 cacctattgc ctgtggctac gcccaggaag agtacagctg ggcgatgggc tttggcctgg
     6121 cggcggtggg tatgatcgcg ggtctggtca ttttcttatg tggcaatcgt catttcacac
     6181 atacccgcgg cgttaataaa aaagtactgc gtgcgacaaa ctttctcctg cctaactggg
     6241 gatggctgct ggttctgctg gtggcaacgc ctgcgctgat taccgtattg ttctggaaag
     6301 agtggtcggt atacgcctta attgtcgcga ctattattgg cctgggtgta ctggcaaaaa
     6361 tttatcgcaa agcagaaaac cagaaacagc gtaaggagct ggggctgatt gtgacgctca
     6421 ccttcttcag tatgttgttc tgggccttcg cacaacaggg cggcagctcg attagccttt
     6481 atatcgaccg cttcgttaac cgcgatatgt ttggttatac cgttccgact gctatgttcc
     6541 agtcgattaa tgccttcgca gttatgctgt gcggtgtgtt cctggcgtgg gtggttaaag
     6601 aaagcgtcgc aggtaatcgt accgtgcgca tctggggaaa atttgctctt ggtctcggcc
     6661 tgatgagcgc cgggttctgc attctgacct taagcgcccg ctggtccgca atgtatggtc
     6721 actcttctct gccactgatg gtattaggcc tggcggtgat gggctttgcg gaactgttta
     6781 tcgacccggt tgccatgtcg caaattacgc gcattgaaat ccccggtgtg accggcgtat
     6841 taaccggcat ttatatgctg ctttccggcg cgattgcgaa ctatctcgcg ggcgtgattg
     6901 ccgatcagac atcgcaggct tcgtttgatg cttccggggc gatcaactac tccatcaatg
     6961 catatattga agtatttgat caaattacct ggggcgcact ggcgtgtgta ggactggtac
     7021 tgatgatttg gctgtatcag gcgctgaaat tcagaaaccg cgcgctggcg ctggagtcat
     7081 aataggccag caccatacct gataaaacgc tcgctgcgtt ttatcaggct cctttcctcg
     7141 cttcttcgta cgctgccagc gttcgcagcc ttgcctcttt gtgatcaact atcggttgcg
     7201 gataatccag catcacacct gctttctgcg cccacttcca cggctcatgc accgctttcc
     7261 ctggtacatc gcgcagctcc ggtaaccatc gacgaataaa ctcgccctca cggtcaaatt
     7321 tctcgccctg ggttgtcggg ttgaaaatac gaaaatacgg cgctgcatcg gttccggttg
     7381 aagcggccca ctgccagcca ccgttattgg ctgccaaatc accatcaatc agctgcgaca
     7441 tgaaatatcg ctcgccttcg cgccagtcga tcaacaaatc tttcaccaga aaactggctg
     7501 taatcatccg tagccggtta tgcatccagc cagtgctgtt aagctgacgc atggcagcat
     7561 cgacaatcgg gtatcccgtt ttgccttcct gccaggcctg taaatgtgcg ggattgctct
     7621 gccactgcac acgatccgtc caggcaataa acggacaatg tttacacaac gaggggtaat
     7681 acgtcatcag atgacggtag aactcgcgcc agatcagctc actaagccag acactaccgg
     7741 ccccaccgtc cagcgcctgc ggctgttccg ccaacaagcg atgcaaacac tggcgaggcg
     7801 ataacccgcc cgttgccagg ctggcggaca aacgactggt gccttccact gccggaaaat
     7861 ctcgttgttg ctcatattct ccggcaccgt tctggcaaaa ctggcgtaat tgcgcaatcg
     7921 ccgctttttc ttccaccggg aaatgcgcag tatcgaaaga ctgacgagga taattcagcg
     7981 taatggatgg cgagggctct atcgatccgc tactacgaac ttttggcgca gcgacgcact
     8041 ccggcatccc ttcccgcagc cgtttcagcc aggcattctt aaaaggcgta aagactttgt
     8101 acatctcgtg attaccggtc atcaccgcgc caggcggcag gatcacgctg tcatcaaatc
     8161 cttcacacac cacgttacgc agcgctcttt caacttccac atcccgcgcc cgctcattca
     8221 cttcatactg atagttataa aacaggtggg taacgctgtt ttccgcgcac acctgtttaa
     8281 ctatttcgac actggcgaca aagtcatcca cttcacggaa caataaagga ataccttttt
     8341 ccgcaagcgc tatttgtagc ccattcagtt gagcattgat aagttcagcc tgacgcggcg
     8401 acatgttatg cgtcgcccac tggcgtggtg tagcgatata caacgccagc acgcgtgcag
     8461 acgaattgct gcaggcggca gccagtgcga gattatcgtg caaacgtaaa tcctggcgaa
     8521 accagaccag atgggtagtc ataaaactcc tgaatggcgc aagttaatca cacgcggcca
     8581 aagttcgaaa taacgctgcc ctgaaagcca ggcgtcagga taaagcgcca tatagtgttt
     8641 gatacgcatc agcggcgcaa gaagtggttg ctcgccacgg cgataactgt cgataagcgc
     8701 agccagctgc tggcgttctg tggaatcaat atgcgggcga aaataaccct gaacgtgcat
     8761 caaaacattg gtgtgatcgc gcgggttggc ggggtgagaa agcaaaacaa ctacgcgttg
     8821 gcggtactgg ttgtaatagt catccagatt ttgccactgg tgaatatcag ccacgaacgg
     8881 gccaagtttg cggtactccg gctgagaatg cgccagaaag acgagtttat agcggctgtg
     8941 ataatcgaga agcgccccgc gcgttaagcc atgttctttc agtcgatgta actcatgaag
     9001 ggcaaagata cggattaggg tgctgtcatc aaatcgttgt agattcatta ctgctcctga
     9061 acggtataaa ggagtaagtg tagacgatgg taaatgaatt ttatggggca gagtttttgc
     9121 ggggaagtat tttgttggta aaaatattat caacttcatc tgagcgagaa ttattctact
     9181 atttcccgag ctgcattcat tttttgtatt ttttattttt agaaaataac agttctcaaa
     9241 gcttaattac ctcactatta attgtatttc aaactaacaa tcgcactcca ttttctctct
     9301 ttaaaaaaca taaacactgt taaaacaaat atttatttcg ttatcttaaa tgctatttct
     9361 acatcactcg tccttataat caaattattc ttattcatag ctatttttgc aggtttaaaa
     9421 tagcggcttt caccaaagtc agccatgaaa attagactac aagttctccc agcctttgca
     9481 catgagaaaa accacccatc aactctattt attcctgaac ctttaacacc ataataaatc
     9541 agaatttctg ggtattgttc atccttcacg ttttcatatt tttggtattt aattgaaaac
     9601 caagagtcta tactgccaac atcttcaaaa aatattggag ctgatgtttc cgcatgaaca
     9661 tatgcagaaa atgctaacaa aatggcaata cttagtttgg taaaaatatc gttccacact
     9721 tttcaggata atctattggg gggaagggat cttttcctct aaatctaatt gctcccactc
     9781 cttgtttgtc agaccattcg ccatttgcat cctgacgata ccagtgataa tcccctccca
     9841 tgcctataaa attgtgagga cgaataaaca attgagcttt atggtaacca gatggacaac
     9901 tcccattatc taaatccttg gcaccatcat tttttgacgc ttcaaaaata ctaccgcaag
     9961 tgagtttaga aaactctttt ccagataatt ctccaggttg taatcctccg ccgccaaaaa
    10021 tcctactccc agggtttcca tacctattta gagcatatga ataacaatta tttacggcaa
    10081 gataatacgg atctgaattt aggtctcgat tgaatactgg agcaggttta tcaattaagc
    10141 ccagcg
//
LOCUS       DAJVSY010000152         9999 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.154, whole genome shotgun sequence.
ACCESSION   DAJVSY010000152 DAJVSY010000000
VERSION     DAJVSY010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9999)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9999)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9999
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.154"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(264..1607)
                     /gene="gdhA"
                     /locus_tag="OQQ19_003403"
     CDS             complement(264..1607)
                     /gene="gdhA"
                     /locus_tag="OQQ19_003403"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HCS1804903.1"
                     /translation="MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPK
                     YRQMSLLERLVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVN
                     LSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSESEVMRFCQALMTELYRHLGA
                     DTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYF
                     TEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTK
                     EKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCATQNELDVGAAHQ
                     LIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLG
                     WKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGVI"
     gene            1843..2115
                     /locus_tag="OQQ19_003404"
     CDS             1843..2115
                     /locus_tag="OQQ19_003404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnjH family protein"
                     /protein_id="HCS1804904.1"
                     /translation="MSRALFAVVLAFPLIALANPHYRPDVEVNVPPEVFSSGGQSAQP
                     CTQCCVYQDQNYSEGAVIKAEEILLQCQRDDKTLSTNPLLWRRVKP"
     gene            complement(2081..2488)
                     /gene="nudG"
                     /locus_tag="OQQ19_003405"
     CDS             complement(2081..2488)
                     /gene="nudG"
                     /locus_tag="OQQ19_003405"
                     /EC_number="3.6.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP pyrophosphohydrolase"
                     /protein_id="HCS1804905.1"
                     /translation="MKMIEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVELDES
                     QQQALVRELNEELGIEATVGEYVASHQREVSGRIIHLHAWHVPDFHGTLQAHEHQALV
                     WCSPEEALQYPLAPTDIPLLEAFMALRAARAAD"
     gene            2575..3186
                     /locus_tag="OQQ19_003406"
     CDS             2575..3186
                     /locus_tag="OQQ19_003406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416272.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HCS1804906.1"
                     /translation="MLDRHLHPRIKPLLHQCVRVLDKPGITPDGLTLVGFAIGVLALP
                     FLALGWYLAALVVILLNRLLDGLDGALARRRELTDAGGFLDISLDFLFYALVPFGFIL
                     AAPEQNALAGGWLLFAFISTGSSFLAFAALAAKHQIDNPGYAHKSFYYLGGLTEGTET
                     ILLFVLGCLFPAWFAWIFGALCWMTTFTRVWSGYLTLKSLQRQ"
     gene            complement(3195..4502)
                     /gene="ynjE"
                     /locus_tag="OQQ19_003407"
     CDS             complement(3195..4502)
                     /gene="ynjE"
                     /locus_tag="OQQ19_003407"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416271.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase YnjE"
                     /protein_id="HCS1804907.1"
                     /translation="MKRVSQMTALAMALGLACASSWAAELAKPLTLDQLQQQNGKAID
                     TRPSAFYNGWPQTLNGPSGHEPAALNLSASWLDKMSTEQLNAWIKQHNLKADAPVALY
                     GNDKDVDAVKTRLQKAGFTHISILSDALSEPSRLQKLPHFEQLVYPQWLHDLQQGKEV
                     TAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKH
                     GIRHDTTVILYGRDVYAGARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERGTPPKV
                     KAEPDFGVKIPAQPQLMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGE
                     IAGARWGHAGSDSTHMEDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRAS
                     ETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVATGERGPDSSK"
     gene            complement(4569..5222)
                     /locus_tag="OQQ19_003408"
     CDS             complement(4569..5222)
                     /locus_tag="OQQ19_003408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HCS1804908.1"
                     /translation="MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLF
                     SWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALP
                     STLKGTARRNAVKDALDRAGLAETYHQDPATLSGGQRARVALLRALLAQPKALLLDEP
                     FSRLDVALRDNFRQWVFSEVRELAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR"
     gene            complement(5222..6757)
                     /locus_tag="OQQ19_003409"
                     /pseudo
     CDS             complement(5222..6757)
                     /locus_tag="OQQ19_003409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416269.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(6730..7896)
                     /locus_tag="OQQ19_003410"
     CDS             complement(6730..7896)
                     /locus_tag="OQQ19_003410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCS1804909.1"
                     /translation="MRHCGWLLGLLSLFSLATHASDWQEIKNEAKGQTVWFNAWGGDT
                     AINRYLDWVSGEMKTHYAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGE
                     NFRTLKEANLLQTGWAETLPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRD
                     VTPQPPQTPQALLEFAKANPGTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPDDA
                     TFARVTAPLWQYLDALHPYLWREGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKI
                     ASGDLPASSYSFGFREGMIGNVHFVTIPANANASAAAKVVANFLLSPDAQLRKADPVV
                     WDDPSVLDPQKLPDGQREILQSRMPQDLPPVLAEPHAGWVNALEQEWLRRYGTH"
     gene            complement(7906..8454)
                     /locus_tag="OQQ19_003411"
     CDS             complement(7906..8454)
                     /locus_tag="OQQ19_003411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HCS1804910.1"
                     /translation="MGLPPLSKIPFILRPQAWLHRRHYGEVLSPIRWWGRIPFIFYLV
                     SMFVGWLERKRSPLDPVVRSLVSARIAQMCLCEFCVDITSMKVAERTGSTDKLLAVAD
                     WRQSPLFSDEERLALEYAEAASVTPPTVDDALRTRLAAHFDAQALTELTALIGLQNLS
                     ARFNSAMDIPAQGLCRIPEKRS"
     gene            complement(8454..9161)
                     /locus_tag="OQQ19_003412"
     CDS             complement(8454..9161)
                     /locus_tag="OQQ19_003412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001697152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HCS1804911.1"
                     /translation="MMKMQSRKIWYYCITLIILLFAMLLAWALLPGVHEFINRSVAAF
                     AAVDQQGIERFIQSYGALAAVVSFLLMILQAIAAPLPAFLITFANASLFGAFWGGLLS
                     WTSSMAGAALCFFIARVMGREVVEKLTGKTVLDSMDGFFTRYGKHTILVCRLLPFVPF
                     DPISYAAGLTSIRFRSFFISTGLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTV
                     VIFMAKKIWLERQKRND"
     gene            complement(9176..9853)
                     /gene="ydjY"
                     /locus_tag="OQQ19_003413"
                     /pseudo
     CDS             complement(9176..9853)
                     /gene="ydjY"
                     /locus_tag="OQQ19_003413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416265.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protein YdjY"
     gene            complement(9858..>9999)
                     /locus_tag="OQQ19_003414"
     CDS             complement(9858..>9999)
                     /locus_tag="OQQ19_003414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HCS1804912.1"
                     /translation="RFILQLCLAGLALFILVQLAKLYARHKHVDLSASRRSPLTHPKN
                     EG"
BASE COUNT         2385 a         2725 c         2583 g         2306 t
ORIGIN      
        1 atctgctgct atcgcagaaa gttaacggat gctgaacttg aagcgtgtta tcgttacgac
       61 aagcagtttt gggagcacta cagtaagaaa tgccgttggc ccataagaaa tgttccctgg
      121 ggagcatcat ccgttaaata ctcataaacg cctgaaattt tgccgggggc gctgcgcttg
      181 cccggcctac attagagcgt aactgcaatg aattgtgccc atttgtaggc ctgataagcg
      241 tagcgccatc aggcatttac aacttaaatc acaccctgcg ccagcatcgc atcggcaacc
      301 ttcacaaaac cggcaatgtt cgcgccctgc acgtagttgg tttgctcacc ttcaccacca
      361 tgctcaacac aggcatggtg gatatccagc atgatgtgat gcaaacgtgc gtcaactttc
      421 tcggctttcc agcccaggcg cgcagcgttt tgcgccattt caaggcctga cgttgctaca
      481 ccgccagcat tagccgcttt acccggtgca aacagtacgc ctgcctgctg gaacagttca
      541 gtcgcttcga tggtggtcgg catatttgcc ccttcggcga cggctttaac gccattggcg
      601 ataagctgat gcgcggcgcc aacatccagt tcgttctggg tggcgcaagg cagggcgata
      661 tcaaccggta cagaccacgg ctgttggcct tcgagataga ccagaccaaa ttctttggcg
      721 taatctgcca ctcgaccatc gcggctggct ttgatttcga taagacgtgc cagtttctct
      781 ttcgtgaatc cgctttcatc aactacagtg ccgctggagt ctgacgcagt gatcacacga
      841 gcaccaaatt ccatcgcttt ttcgatagcg tactgggcga cgttgccgga gccagaaacg
      901 gaaacgcgca tcccttcaaa acccataccg tggcgtttta acattgcttc tgtgaaataa
      961 accagaccgt agccggtagc ttccgggcga ataagactac cgccaaatga aaggccctta
     1021 ccggtgaaga cgcaggcggt attgttggag agctttttca tcatccccgc cataaagccg
     1081 acttcacgac caccaacgcc gatatcacct gccggaacgt cagtatccgc gcccagatga
     1141 cgataaagct cggtcatcag cgcctggcag aaacgcatca cttcgctttc gcttttacct
     1201 ttcgggtcaa aatcgctacc gcctttacca ccgcccatcg gcagggtagt cagggcattt
     1261 ttgaaggttt gttcgaagcc gaggaatttg agaatggaga ggttaactga cggatggaag
     1321 cgcataccgc ctttgtacgg gccgatggct gagctgaact gcacacgcca tgcacggttg
     1381 acctgtacct ggttgcgatc atcaacccat accacgcgaa actggatcac gcgctccggt
     1441 tcaaccagac gctccagtaa tgacatctgg cgatattttg gattttgttc aagaaaaggc
     1501 cagagtgtgg tcattacttc acgaacggct tgcgcgaact cggtttgatt cgggtcgcgc
     1561 ttttggacat ggttgaggaa tgactccaga gaatatgtct gatccataga tataaaaccc
     1621 ttatatatta atacgattgt gcttatgttg tttatgtcat gtgcttttgc agttttcgac
     1681 tataccatca agaatgtgac ggtaagcaag aaaaaaatga cccaggaaag caaattaata
     1741 acgagagtaa tctcataacc aaatgcgata actcagacgc taaagttttg ccacccggct
     1801 accgttatca gttgcagaga caataacgtt aaggagttcc ctgtgagtcg agcattgttc
     1861 gccgtagtat tagcatttcc attaattgca ctggctaacc cgcattatcg tccggacgtg
     1921 gaggtaaacg taccgccaga agtgttcagt tcaggcgggc agtcagcgca gccctgtact
     1981 cagtgctgcg tttatcagga tcaaaattat tctgaagggg cggtaattaa agccgaagaa
     2041 atactgctgc aatgccagcg ggatgacaaa acccttagca ctaatccgct gctctggcgg
     2101 cgcgtaaagc cataaacgcc tctaatagtg gaatgtcagt aggggccagc ggatattgca
     2161 gcgcctcttc aggtgagcac cagaccagcg cctgatgttc atgtgcctgt aacgtcccgt
     2221 ggaagtcggg tacgtgccag gcatgaagat ggataatccg gcccgaaact tctcgctgat
     2281 ggctggcaac atactcaccc acagttgctt cgatgcccaa ttcttcgttt aactcacgca
     2341 ccagtgcctg ctgctggctt tcatccagct cgactttacc accggcaaac tcccataatc
     2401 ccgcctgatc gctctgggcg gggcgttgcg cgagtaaaat tttgccatca cgttcaatga
     2461 tggcggcaac aacttcaatc attttcataa attacacacg ggcagataag cgaaaaatgc
     2521 cataatatcc gcactgttgc tcaatcagaa aggctttata tttaaggagt gcctgtgcta
     2581 gaccgccatc ttcatccccg gattaaaccg ttgttgcatc agtgcgtgcg ggttcttgat
     2641 aaaccgggca ttacgccaga tggtttaaca ttagtgggat ttgccatcgg cgtgctggct
     2701 ctgccgtttc tggcgctggg ctggtatctg gcggcgctag tcgtcatttt gttgaacagg
     2761 ctgcttgatg gtctggacgg tgcgctggcg cggcgcagag agcttaccga cgcgggcggc
     2821 tttcttgata tttctctcga ttttctcttt tacgcgctgg tgccgtttgg ctttattctt
     2881 gctgcaccgg agcaaaatgc gctggcaggc ggctggttgt tgtttgcgtt tatcagcacg
     2941 ggcagcagtt ttctcgcctt tgctgcactg gcagcaaaac atcagattga taaccccggt
     3001 tatgcacata agtcgtttta ctatctgggg ggattaaccg aaggcacaga aacgatctta
     3061 ctgtttgtgc tgggatgttt attccctgca tggtttgcgt ggatcttcgg tgcgttgtgc
     3121 tggatgacga cctttacgcg ggtgtggagt gggtatctga cgctgaagtc gctccagcgt
     3181 cagtaattgc aatgttattt gctactgtcc gggccgcgtt caccggttgc taccggattt
     3241 tttggatcgc tgctccattc gtaccagccg ccgtcataca cggaaacatt cttccaaccc
     3301 atggcgcgtg cgtacataaa ggtttcggac gcgcgccagc cggtgccgca gtagaatgaa
     3361 acttgctgct ctggtttgat attccacgct ttccacatag cggtaatatc atcggcgctg
     3421 cgcatggtgc catccgggtt atgaaaatct tccatatgcg tcgagtcgct accagcgtgt
     3481 ccccaacgtg ctccggctat ttcacctttt ggtttaatat agctgtaacc gctggtcgta
     3541 ccgataaatt ctggccacga acgaatgctc accagcgatg catcctggcg atgcagcagt
     3601 ccacgggcct gttccatatc gagcatcaac tgcggttgtg ccgggatctt cacgccgaaa
     3661 tccggttccg ctttcacttt cggtggcgtt cctcgctcaa caggcagtcc cgcgtcggac
     3721 caggtttgcc agccgccatc cagcagacgc acatctttca cgcctgcgta gagcataatt
     3781 tgcgccacac gcgctccagc gtatacgtca cgcccgtaca gaatgaccgt ggtgtcatgg
     3841 cgaatgccgt gttttgccag catcgctttt agttgttcat cagaaacttt gttccacagc
     3901 ggttcgcttt ccacttcgtt ggtatcgatg tagtcagcac cgggaatatg gctgataagg
     3961 taaagcttag gagcgcccca ggccgcttca atgactttcc agtcaccggc aggtttcgcc
     4021 gtaacctctt taccttgttg caggtcgtgc agccattgcg gataaaccag ctgctcaaag
     4081 tgcggcagtt tttgtagacg ggaaggttcg cttagcgcgt cactcagaat ggagatatgc
     4141 gtaaaacctg ctttttgcag tcgcgttttg acggcgtcga catctttgtc attaccgtac
     4201 agcgccaccg gggcatcggc tttcaggtta tgttgcttga tccacgcgtt gagctgttcg
     4261 gtgctcattt tgtcgagcca gctggcagag aggtttaagg cggcaggttc atgaccagaa
     4321 gggccattta aggtttgtgg ccagccgtta taaaacgcgc tggggcgagt atctatcgct
     4381 ttgccatttt gttgttgaag ctggtcaagt gtaagaggct tcgccagttc agcggcccac
     4441 gaagaagcgc aagccagccc taaagccatt gccagcgcgg tcatttgaga aacacgtttc
     4501 atcgaaaatc ccgacattgt agttttgagt gcgccattct gaactgacgc attgagaaaa
     4561 actttgcgtt atcgcagttt gttgtaattt tctgaccact gcgccatatc cagaacagaa
     4621 ctatcagcag gaacatcctg gagatcgtgc gttacctgaa cgacggggat cgccagttcg
     4681 cgaacttcgc tgaacaccca ctggcgaaaa ttatcgcgca gagccacatc aagacggctg
     4741 aatggctcat ccaggagtaa cgcttttggc tgagcgagaa gggcgcgcag cagggccacc
     4801 cgcgctcgct gaccgcctga taatgtcgca gggtcctggt gataagtttc agccagtccc
     4861 gctcgatcaa gcgcgtcttt cacggcattg cgcctggcag tccccttgag cgtcgacggt
     4921 agcgccagca gtaaattttg cccgacgctg aactggtcaa ataacagtgc atcctggaaa
     4981 agaatgccaa tctgacgctg tgcggtgggt agcatgtcaa tccgttgctc attgagccat
     5041 agctcacctg tacaagaaaa ctgtccagcc agtgcaccaa tcatccatga aaacagagtg
     5101 gattttccac agccagacgg ccccattaac gtgacgatgt cacctttatc aaccgtaaag
     5161 ttaacgtttg tcagcaagcg gctttctggt aaacgtagcg aaacattttt cacgcagagc
     5221 attagcggag tccttgtctg acataaccta cccattttgc gactaacgcg gtcagggcaa
     5281 aaataataag cggtaacaac agttgccata aagcctgggc ggcgagaata ccgttgctgc
     5341 cgccgctgct taatgccacc gcctcagtgg tgagcgtcgg aaaacgcccc gcgcccagcc
     5401 acagcgtcgg catatactgc gcaatactga ctgaaaatcc caccgcgaag gcaatcagca
     5461 cagggcgcaa catgagtgtg catttcacgt aaaagaagat tttggcccgc taccagccca
     5521 gtgtttgcgc aatcaaaatt aaccgtgaat caatgcgctg ccaggcgggt tgcaggataa
     5581 acagcatcca cggcattacc cacagcagat gcccccagac caccgccgtc cagcttccat
     5641 ccaggttcag ccatagcgcc agcgtgtact ggcccgccac cagtggcaga gcgggcaata
     5701 gaatgggcaa ccatagccac aactggcgac gctgtggccc ccattccagc cacagcagta
     5761 acaggagcaa agcgatgaat gttgctacca gccccattgt cagactgttg atgagtgctt
     5821 cactattgat cgtcgactga tccgcgagga tcgccagcag aaccacacac agcacaccgg
     5881 ttaagggtaa aaaactcgcc agcgtagtgc ctggtaataa aggtgtggca ggcttgcgaa
     5941 tgccatctac gcggggaata gtgcgccgcc agctgcgcca tagcagatag ctcagcaaaa
     6001 cgtaggcggc gagtaacagc atcagcagca gactggcgag tgcgcctttc gtttgttgat
     6061 ccgcgtcgcc ctgagttaac cactgccagc taattactgc cagcgtcggt ggattacctg
     6121 gcccaagaat aatcgccaca tccacgaccg aaagcgacca ggcaacaatc gccagcatcg
     6181 ccattgccag cgaaggcgcg acggagggca acagcagcca gttcaggcat tgccagcggc
     6241 tgtagcccag cgaatccagc acaatgacct gctgcaacag ccgtttttcg ctcaatactg
     6301 ccgctaagat ccacagcaga aatgcgcttt ctttcactgc aagggtgagg cccagaccga
     6361 tgccaaatcg gtccattggc ggagtgaaat acgggaaata gtcatatagc agccctccgt
     6421 cagcaaagag cagcagggcg ctggtggcaa aagccacatg gggaatggcg agcagccacg
     6481 gcagacgggc gcacatacgc tgccatttcg gcccaggcca tagcgccaca atcaccagca
     6541 gggcaatcaa caatgccccg accgccgcga tggttgtcga caccagcgtt gccagtaatg
     6601 catgcggtaa ctgtggatcg gcaaataacg cctgccagtg tgtcaacgac aacgcaggcg
     6661 atatcagcgt gagagctgcc gggatcagcg gtgcataaat caccgccacc atcgcccaca
     6721 gcaaaaagat taatgcgtac cgtaacggcg taaccattct tgttccagtg cattcaccca
     6781 tcctgcgtgc ggttcagcca gtaccggcgg cagatcctgc ggcattcttg attgcaatat
     6841 ttcgcgctgc ccgtcaggca gtttttgcgg atcgagaaca gaaggatcgt cccagacaac
     6901 gggatctgct ttacgcagtt gcgcatcggg tgagagcaga aaattggcaa ctaccttcgc
     6961 cgcagcactg gcattcgcgt tggctggaat ggtgacgaaa tgcacgttgc caatcatccc
     7021 ctcgcgaaag ccaaaactgt aactgcttgc cggcaaatcg ccgctggcga ttttttgctg
     7081 cgcatgcgcg gggttaaagg tcagcgacag gcgcaatgtg ccggctttca gcagagcatc
     7141 catccgcgcg ggcgaaggcg ggaaatcctt tccttcgcgc cacaaatacg gatgcagtgc
     7201 atcaagatat tgccacaagg gcgcagtgac acgggcgaaa gtcgcatcgt ccggcgcttc
     7261 ttttaatgcg gcgggatctg gcgtcagcat aatcagcaac tgttcaagaa acgccgtgcc
     7321 ggtaaagtcc ggtgggcgcg gataagtaac cgtgccggga ttggctttag caaactccag
     7381 taaggcttgc ggcgtttgtg gtggctgtgg cgtaacatcg cggcgggcga taaacgtcag
     7441 ttgtgcgccg ccccagggcg attccgcacc ttgtgtcggc actgaaaaat cttcccgcac
     7501 cggcagctgt gtgtcgacat agcgccagtt gggcagagtc tccgcccagc ccgtttgtaa
     7561 taaattggcc tcttttaagg tgcggaagtt ttcgccgttc acccagagca gatccaccga
     7621 gccgcccgtt ttacgaccgg cagcagcttc ggtctgaatg cgcttcaccg cgtctgcggc
     7681 atccgcgaga cgaacaatct tcaggtttat agcgtaatgg gttttcatct cgccgctaac
     7741 ccagtcgaga tagcggttaa ttgcggtatc gccgccccag gcgttaaacc agacggtttg
     7801 ccctttggcc tcatttttaa tttcctgcca gtcactggca tgtgttgcca aagaaaacag
     7861 cgataacaat cccagcaacc acccacaatg gcgcatcttc tctccttaag aacgtttttc
     7921 cggaatacgg cacagcccct gagcgggaat gtccatggca gaattaaaac gagccgacag
     7981 gttttgcagg ccgatcaatg ccgtcagttc ggtgagcgcc tgagcgtcaa aatgcgcagc
     8041 cagtcgggta cgcagggcat catcgactgt tggcggtgtg acgcttgcgg cttcggcgta
     8101 ctccagcgcc agccgttctt catcgctaaa gagcgggctt tgccgccagt cagccactgc
     8161 cagcagttta tcggtgctgc cggtacgctc ggcgactttc atactggtga tatccacaca
     8221 aaactcacac aggcacattt gcgcaatgcg cgcgctgaca agcgatcgca ctaccggatc
     8281 gagcggtgag cgtttgcgct ccagccaccc aacaaacatt gacaccaaat aaaagataaa
     8341 cgggatccgc ccccaccagc gaatcgggct tagcacctcg ccgtaatggc gacgatgcag
     8401 ccacgcctgc ggacgtaaaa tgaaaggaat tttgctaagc ggcggtaaac ccatcagtca
     8461 ttcctcttct ggcgctcaag ccatattttc ttcgccataa aaatcaccac ggtcagggca
     8521 aacagaataa acagtccggt gacaaaccag aaagtaccgc ctgttaacat gctgcccgcc
     8581 caggaataaa caatagtcgc cggtaattga ccaagcccgg tggagataaa aaacgagcga
     8641 aaacgtattg aagtcagacc ggcagcatag ctgattggat cgaaagggac aaaaggcaat
     8701 aaccgacaga ccaggatggt gtgtttgccg tagcgagtga aaaagccgtc catactgtca
     8761 agcacggttt tgccggttaa tttttccacc acttcgcggc ccatcactct ggcgataaaa
     8821 aagcacagcg ccgcgccggc catcgaactg gtccacgaca gcaagccgcc ccagaacgcg
     8881 ccaaacagcg acgcattggc aaaggtgatc aaaaacgcag gtagcggtgc agcaatggcc
     8941 tgtaaaatca tcaacaagaa cgagacaact gccgccagtg cgccgtaaga ctgaataaag
     9001 cgttctatac cctgttggtc cacggcggca aacgccgcaa cgctgcgatt gataaactca
     9061 tggacgccgg gaagcagcgc ccatgcgagc agcatagcga acaacaggat gatgagggtt
     9121 atacagtagt accagatttt acgcgattgc atcttcatca tcctttatcc tggctttatt
     9181 cggtgatttt aaaggtaacc gttgccagcg tgttatccgc cgggagaact gaggcattgc
     9241 ctttgaattt cacttcgccg cgtttttcca ccgcaccata agtgtatgtt gcattgctga
     9301 cgatgccgac cgggcagcta tccagacaca ccagtcaacc cgttttcttc tcttctgctg
     9361 ccgttaaatt accgccaaag cgcatgtcca gtttcttgcc attactgtca acaatcactt
     9421 catcgaagga atacgctttt gccgcccctt gccagttgac cgaaatatcc agtttgctgc
     9481 ctgtgacatg agtcgtttct ttattatcca tcgtcatgtt ttcgcccggc gtaccacctg
     9541 cctctttcag ggcttcataa aatgctttcg gggtcgcata agccataaac agcgatttat
     9601 gtccgttgga gccatcttta aacacaatac cgtgacgagt gtcgtcggtg aggaaacgac
     9661 cattaatttg caccagcatg gttaccgtat ggttattggc atcgacgcgc agcggttggc
     9721 tgttcgaaag tccgtcgtat tccacttttg ccgccgaatt ctctttttga tcgcagccgc
     9781 taagcccggc aacagccagt aagcagagtg cagccagtcc ttttttccat gacactgaat
     9841 aatgttgcga catcgttcta tccttcattt tttgggtgag taagcgggct gcggcgcgaa
     9901 gcagacagat ccacatgttt gtgtcgggcg tagagttttg cgagctggac gagaataaac
     9961 agcgccaggc ccgccagaca gagttgtaaa ataaagcgc
//
LOCUS       DAJVSY010000153         9955 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.155, whole genome shotgun sequence.
ACCESSION   DAJVSY010000153 DAJVSY010000000
VERSION     DAJVSY010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9955)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9955)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9955
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.155"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            259..456
                     /locus_tag="OQQ19_003415"
     CDS             259..456
                     /locus_tag="OQQ19_003415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804913.1"
                     /translation="MEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYSSK
                     VMIISLFDSTVMPDKYRHNGK"
     gene            complement(406..1599)
                     /locus_tag="OQQ19_003416"
     CDS             complement(406..1599)
                     /locus_tag="OQQ19_003416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1804914.1"
                     /translation="MSPGIEDTPQKTLSCWPLAFSAGLLGIGQNGLLVVLPVLVIQTN
                     LSLSVWAALLMLGSMLFLPSSPWWGKQISRTGSKPVVLWALGGYGISFTLLGLGSVLM
                     ATSAITTAVGLGILIIARIAYGLTVSAMVPACQVWALQRAGEGNRMAALATISSGLSC
                     GRLFGPLCAAAMLAIHPLAPLGLLMAAPVLALLMLLRLPGTPPQPTPECKSVSLKRDC
                     LPYLLCAILLAAAVSMMQLGLSPALTRQFVTDTTAISQQVAWLLGLSAVAALIAQFGV
                     VRPQRLTPVALLLSAGVLMSGGLAIMLSEQLWLFYPGCAVLSFGAALATPAYQLLLND
                     KLADGAGAGWLATSHTLGYGLCALLVPLVSKTGVAIALIMAALFATILFTIVSVFIWH
                     YRTIK"
     gene            1735..3459
                     /gene="iucA"
                     /locus_tag="OQQ19_003417"
     CDS             1735..3459
                     /gene="iucA"
                     /locus_tag="OQQ19_003417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001314127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobactin synthase IucA"
                     /protein_id="HCS1804915.1"
                     /translation="MTLPSEKPATDVAAQCFLNALIRETTDWKLTEYPPDELLIPLDE
                     QKSLHFRVAYFSPTQHHRFAFPARLVTASGSYPVDFTTLSRLIIDKLRHQLFLPVPLC
                     ETFHQRVLESHVHTQQAIDARHDWAALREKALNFGEAEQALLTGHAFHPAPKSHEPFN
                     RREAERYLPDMAPHFPLRWFSVDKTQIAGESLHLNLQQRLTRFAAENAPQLLNELSDN
                     QWLFPLHPWQGEYLLQQGWCQALVAKGLIKDLGEAGTSWLPTTSSRSLYCATSRDMIK
                     FSLSVRLTNSIRTLSVKEVKRGMRLARLAQTDGWQMLQVRFPTFRVMQEDGWAGLLDL
                     NGNIMQESLFALRENLLVDQPKSQTNVLVSLTQAAPDGGDSLLVSAVKRLSDRLGITV
                     QQAAHAWVDAYCQQVLKPLFTAEADYGLVLLAHQQNILVQMLGDLPVGFIYRDCQGSA
                     FMPHATDWLDSIGEAQAENIFTHEQLLRYFPYYLLVNSTFAVTAALGAAGLDSESNLM
                     ARVRASLAEVRDQVTHKTCLNYVLESPYWNVKGNFFCYLNDHNENTIVDPSVIYFDFA
                     NPLQAQEV"
     gene            3460..4407
                     /gene="iucB"
                     /locus_tag="OQQ19_003418"
     CDS             3460..4407
                     /gene="iucB"
                     /locus_tag="OQQ19_003418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N(6)-hydroxylysine O-acetyltransferase"
                     /protein_id="HCS1804916.1"
                     /translation="MSEANIIHSRYGLRCEKLDKPLNLGWGLDNSAVLHCPGELPTGW
                     LCDALDQIFIAAPQLSAVALPWAEWREEPQALTLFGQVKSDIIHRTAFWQLPLWLSSP
                     ANRASGEMVFDAEREIYFPQRPPRPQGEVYRRYDPRIRRMLSFRIADPVSDAERFTRW
                     MNDPRVEYFWEQSGSLEVQTAYLERQLTGKHAFPLIGCFDDRPFSYFEIYWAAEDRIG
                     RHYSWQPFDRGLHLLVGEQQWRGAHYVQSWLRGLTHYLLLDEPRTQRTVLEPRTDNQR
                     LFRHLEPAGYRTIKEFDFPHKRSRMVMADRHHFFTEVGL"
     gene            4407..6149
                     /gene="iucC"
                     /locus_tag="OQQ19_003419"
     CDS             4407..6149
                     /gene="iucC"
                     /locus_tag="OQQ19_003419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobactin synthase IucC"
                     /protein_id="HCS1804917.1"
                     /translation="MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGA
                     QWRFIAERGIWGWLWIDAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYAT
                     LLGDLQLLKARRGLSASDLINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEY
                     TNTFRLHWLAVKREHMIWRCDNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPL
                     PVHPWQWQQKIATDFIADFVEGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPL
                     TIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAVILGEPAAGYVSHEGYA
                     ALARAPYRYQEMLGVIWRENPCRWLKPDESPVLMATLMECDENNQPLAGAYIDRSGLD
                     AETWLTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMKEGVPQRVLLKDFQGDMRLV
                     KEAFPEMDSLPQEVRDATSRLSADYLIHDLQTGHFVTVLRFISPLMVRLGVPERRFYQ
                     LLAAVLSDYMNKHPQMAERFALFSLFRPQIIRVVLNPVKLTWPDLDGGSRMLPNYLEN
                     LQNPLWLVTQEYES"
     gene            6146..7483
                     /gene="iucD"
                     /locus_tag="OQQ19_003420"
     CDS             6146..7483
                     /gene="iucD"
                     /locus_tag="OQQ19_003420"
                     /EC_number="1.14.13.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent L-lysine N(6)-monooxygenase"
                     /protein_id="HCS1804918.1"
                     /translation="MKKSVDFIGVGTGPFNLSIAALSHQIEELNCLFFDEHPHFSWHP
                     GMLVPDCHMQTVFLKDLVSAVAPTNPYSFVNYLVKHKKFYRFLTSRLRTVSREEFSDY
                     LRWAAEDMNNLYFSHTVENIDFDKKSRLFLVQTSRGEYFARNICLGTGKQPYLPPCVK
                     HVTQSCFHASEMNLRRPDLSGKRITVVGGGQSGADLFLNALRGEWGEAAEINWVSRRN
                     NFNALDEAAFADEYFTPEYISGFSGLKEDIRHQLLDEQKMTSDGITADSLLTIYRELY
                     HRFEVLRKPRNIRLLPSRSVITLESSGPGWRLLMEHHLDQGRESLESDVVIFATGYRS
                     ALPQILPSLMPLITMHDKNTFKVRDDFTLEWSGPKENNIFAVNASMQTHGIAEPQLSL
                     MAWRSARILNRVLGRDLFDLSMPPALIQWRSGSRKKPQPEAASLTHYTANIQE"
     gene            7489..9684
                     /gene="iutA"
                     /locus_tag="OQQ19_003421"
     CDS             7489..9684
                     /gene="iutA"
                     /locus_tag="OQQ19_003421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709458.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric aerobactin receptor IutA"
                     /protein_id="HCS1804919.1"
                     /translation="MRKKYMPRALGPLLLVVLSPAVAQQNDDNEIIVSASRSNRTVAE
                     MAQTTWVIENAELEQQIQGGKELKDALAQLIPGLDVSSQSRTNYGMNMRGRPLVVLID
                     GVRLNSSRSDSRQLDSVDPFNIDHIEVISGATALYGGGSTGGLINIVTKKGQPETMME
                     FEAGTKSGFNSSKDHDERIAGAVSGGNDHISGRLSVAYQKFGGWFDGNGDATLLDNTQ
                     TGLQHSNRLDIMGTGTLNIDESRQLQLITQYYKSQGDDNYGLNLGKGFSAISGSSTPY
                     VSKGLNSDRIPGTERHLISLQYSDSDFLGQELVGQVYYRDESLRYYPFPTVNANKQAT
                     AFSSSQQDTDQYGMKLTLNSQLMDGWQITWGLDAEHERFTSNQMFFDLAQASASGGLN
                     NHKIYTTGRYPSYDITNLAAFLQSSYDINDIFTVSGGVRYQYTENRVDDFIDYTQQQK
                     IAAGKAISADAIPGGSVDYDNFLFNAGLLMHITERQQAWFNFSQGVALPDPGKYYGRG
                     IYGAAVNGHLSLTKSVNVSDSKLEGVKVDSYELGWRFTGDNLRTQIAAYYSLSNKSVE
                     RNKDLTISVKDDRRRIYGVEGAVDYLIPDTDWSTGVNFNVLKTESKVNGQWQKYDVKE
                     SSPSKATAYINWAPEPWSLRVQSTTSFDVSDAEGNDINGYTTVDFISSWQLPVGTLSF
                     SVENLFDRDYTTVWGQRAPLYYSPGYGPASLYDYKGRGRTFGLNYSVLF"
BASE COUNT         2395 a         2563 c         2645 g         2352 t
ORIGIN      
        1 cataaaaaac atgtcagtga aaaagaaacc tggcgttggg ttgaaggata taataaagca
       61 acagaactgg ctcgccaatg ccctgatacc catgtattgt caatttctga tcgtgaaggc
      121 gatttttatg acctgtttga acgcgcagag cagactcccg gaataaaagc tgactggctt
      181 gtcagaatga aatttaataa cagagcaacg ctgaatatta atggtaaacg ggatcatagg
      241 ttgttgcacg aaagaatcat ggagattaca ccgcagcaac tggttgaatt cactatacct
      301 gatgggcggg ggcagcaagc cagaacactg cctgacatgc tttcatcaga cgcaggtcct
      361 ctctcatatc ctctgattta ctccagtaag gtgatgatca tatctttatt tgatagtacg
      421 gtaatgccag ataaatacag acacaatggt aaataatata gttgcaaata atgctgccat
      481 aatcagcgcg attgcgacac ctgttttcga taccagcggc accagcaaag cgcacagtcc
      541 atagccaagt gtgtgactgg tagcgagcca gcccgcgcct gcgccatcag ccagcttatc
      601 attcagtaga agttgataag cgggtgttgc cagagctgct ccaaatgaca gcactgcaca
      661 gcccgggtaa aacaaccata gctgttcgga gagcatgata gccagaccac cactcatcaa
      721 cactccggca ctcaggagca gggccaccgg agtcaggcgc tgcggacgga ctaccccgaa
      781 ctgcgcgata agcgcagcta ctgcggacag acccaacagc caggccacct gttggctaat
      841 ggcggtggta tccgtgacga actggcgagt aagggcaggc gaaagtccaa gctgcatcat
      901 gctcaccgcc gcagccagta atattgcgca aagcagataa ggcagacaat cccgcttcag
      961 actgacgctc ttgcactccg gtgtgggctg tggtggtgtg ccgggcaacc gcagcagcat
     1021 cagcagcgcc agcactggtg ctgccatcag tagccccagt ggcgccagag gatgaatggc
     1081 cagcattgct gccgcgcaca gcggcccgaa tagcctgccg caactcaggc cggagctgat
     1141 ggttgccaga gcggccatgc gattcccttc tccagctctc tgcaatgccc agacctgaca
     1201 ggctggcacc attgccgaca cggtcagccc gtaggcgatc cgggcgatga ttaatattcc
     1261 cagtcccacc gctgttgtta tggcgctggt agccatcagc acgcttccca gccctagcag
     1321 ggtaaagctt atgccatatc ctcccagagc ccacaacacc acaggtttac tgccagtacg
     1381 ggaaatttgc tttccccacc acggggacga tggcagaaac agcattgagc caagcatcag
     1441 cagggcagcc catacagaca gactcagatt tgtctgtatg accagaacag ggagcacaac
     1501 cagcagaccg ttctgtccga taccgagaag cccggcactg aacgcaagtg gccagcagga
     1561 cagtgttttt tggggcgtat cttcgatccc tggtgacatt ataatgcttc aactccatgt
     1621 attaattgtg tttatttgta aaattaattt atctgacaat aacatttatt gttgataatg
     1681 agaatcatta tcgacataat tgttattatt ttactgtgtg ggagctgttt gactatgacc
     1741 ctgccctctg aaaaaccagc cacagatgtg gctgcgcagt gcttcctgaa tgcactgatt
     1801 cgtgaaacca cagactggaa actgacagaa tacccgccag acgaattgct catcccgctg
     1861 gatgagcaga aatcgctcca tttcagagtg gcttatttct ccccaaccca gcatcaccgc
     1921 tttgcatttc ctgcacgtct ggtcacggca tcaggcagtt atcctgtcga ctttaccact
     1981 ctctcccggc ttattattga taagctacgc catcaactgt ttctgcccgt tcccctctgc
     2041 gaaactttcc accagcgcgt gctggaaagc catgtccata cgcaacaggc aattgatgcc
     2101 cgtcatgact gggccgctct gcgtgaaaaa gcgttgaatt ttggcgaggc tgagcaggcg
     2161 ctgctgacag gacacgcttt ccaccctgcg cctaagtctc atgaaccgtt taaccggcgg
     2221 gaggctgaac gctacctgcc tgatatggca ccccacttcc cactgcggtg gttttcggtg
     2281 gataaaacgc aaatcgccgg tgaaagtttg catctcaacc ttcaacagcg gctgacgcga
     2341 tttgccgcag agaatgcgcc tcagttactc aacgaattaa gtgacaacca atggctgttc
     2401 ccgttgcacc cgtggcaggg ggaatatctt ttgcagcagg ggtggtgcca ggcacttgtt
     2461 gctaaagggc tgattaaaga cttaggtgag gccggcacgt cgtggctgcc gaccacctct
     2521 tcccgttccc tctactgtgc caccagccgc gatatgatca agttctccct gagcgtacgg
     2581 ctgaccaact ccatccgtac tctgtccgtg aaagaagtga agcgtgggat gcgcctggca
     2641 cgcctggctc aaaccgacgg ctggcagatg ctacaggtcc gcttcccgac tttccgggta
     2701 atgcaggagg atggctgggc cgggctgctc gatcttaacg gcaacatcat gcaggaaagt
     2761 ctgtttgccc tgcgtgaaaa tctgctggtg gatcagccga aaagccagac taacgtactg
     2821 gtctccctga ctcaggccgc acctgatggc ggtgattcgc tgctggtttc ggcggtaaaa
     2881 cgcctgagcg atcgcctcgg tatcactgtg caacaggccg cccatgcatg ggtcgatgca
     2941 tactgtcagc aagtgctaaa gccgctgttt acggctgaag cggattacgg cctggtgctg
     3001 ctggcgcatc agcaaaatat tcttgtccag atgcttgggg atctgccggt cggatttatt
     3061 taccgtgact gtcagggcag cgcttttatg cctcacgcga cagactggct cgattctatt
     3121 ggcgaggcgc aggcggaaaa tattttcacc catgagcagt tgctgcgcta tttcccttat
     3181 tacctgctgg ttaactccac ttttgctgtg accgctgcgc tgggggctgc cgggctggac
     3241 agcgaatcga atctgatggc tcgtgtacga gcatcgctgg ctgaagtgcg tgatcaggtg
     3301 actcataaaa cctgtctcaa ctacgtgctg gaaagtccgt actggaacgt aaaaggtaac
     3361 tttttctgtt atctgaacga tcataacgag aacaccattg ttgacccttc ggtgatctat
     3421 ttcgatttcg ctaacccgct gcaggctcag gaggtctgaa tgtctgaggc aaacattatt
     3481 cacagcagat atggactgcg ctgtgaaaaa ctcgacaagc ccctgaatct tggctgggga
     3541 ctggacaata gcgcggtgtt gcactgtccc ggggagctgc cgacagggtg gctgtgcgat
     3601 gcgctggatc agatatttat cgccgcacca caactgtcag cagtggctct cccctgggcc
     3661 gaatggcgtg aggagccaca ggcgctgacg ctttttgggc aggtaaaaag cgacattatc
     3721 catcgtactg ccttctggca gttaccgtta tggttgagtt caccggcaaa ccgggcctcc
     3781 ggtgaaatgg tttttgatgc agagcgtgag atttatttcc cgcagcgccc accccgtcca
     3841 cagggtgagg tttaccgccg ttacgatcca cgtattcgca ggatgctgag tttccgcatt
     3901 gccgatcccg tttctgatgc agaacgtttc acccgctgga tgaatgatcc gcgcgttgag
     3961 tatttctggg agcaaagtgg ctcactggag gtacagaccg cctatctgga gcgccagctc
     4021 accggtaaac atgcattccc gctgattggg tgcttcgacg atcggccatt cagctatttc
     4081 gaaatctact gggcggcgga agaccgcatt ggtcgtcact attcgtggca gccctttgac
     4141 cgtggcctgc atctgctggt tggtgaacag caatggcgcg gggcccacta tgtgcaaagc
     4201 tggctgcgcg ggctgacaca ttacctgctg ctggatgagc cccgtacgca gcgcacagta
     4261 ctggagccac gcaccgataa ccagcgcctg ttccgccatc ttgagcctgc gggataccgg
     4321 acaattaaag agttcgactt cccacataag cgctcgcgca tggtgatggc ggatcgtcat
     4381 cacttcttca cggaggtcgg tctgtaatga atcacaagga ctgggatttt gttaaccgtc
     4441 ggctggtggc aaaaatgttg tctgagatgg agtatgagca ggttttccac gcggaatctc
     4501 agggcgatga ccactactgc attaacctgc cgggagcaca atggcgcttc atcgctgaac
     4561 gtggtatctg gggctggctg tggattgatg cccaaacgtt gcgctgcacg gacgaaccag
     4621 tactggcgca gacgctgctg atgcagctaa agccggtgct gtcaatgagt gatgccactg
     4681 ttgcagagca tatgcaggat ttgtatgcca cgctactggg cgacctgcaa ctgctgaagg
     4741 cccgtcgcgg actgagtgcc agtgacctga ttaatcttga tgccgatcgt ctgcaatgcc
     4801 tgctgagcgg tcatcctaaa ttcgttttta ataaaggtcg ccgtggctgg ggcaaagagg
     4861 cgctggaacg atatgcgcca gagtatacca acaccttcag actgcactgg ctggcggtaa
     4921 aacgtgaaca tatgatctgg cgctgcgata acgatctgga tattcagcag ttgttgactg
     4981 ccgcaatgga tccgcaggag tttacacgct tcagtcaggt ctggcaggaa aacgggctgg
     5041 atcacaactg gctaccgctg ccggtacatc cgtggcagtg gcagcaaaaa atcgccacag
     5101 acttcatcgc tgattttgtc gaaggcagga tggtgtctct cggcgagttt ggcgaccagt
     5161 ggctcgccca gcagtcgctg cgtaccctga ccaacgccag ccgccgggga gggctggata
     5221 tcaagctgcc gctgaccatc tacaacacct catgctaccg ggggatccct ggcagatata
     5281 tcgctgccgg accactggct tcacgctggc tgcaacaggt ttttgcgacc gacgccaccc
     5341 tggtgcaaag cggcgcagtg atccttggtg aaccggcggc aggctatgtg tcccatgaag
     5401 gctatgccgc gcttgcccgg gctccctatc gctaccagga aatgcttggt gttatctggc
     5461 gggagaatcc gtgccgctgg ctgaaaccgg atgaaagtcc tgttctgatg gcaacactga
     5521 tggagtgcga cgaaaacaat cagccgctgg caggcgcata tatcgaccgc tccggactgg
     5581 acgctgaaac ctggcttacg caattgttcc gggtggttgt ggttccgctg tatcacctgc
     5641 tttgccgcta cggtgtcgcg cttattgcac acggacaaaa tataacgctc gccatgaaag
     5701 agggggtacc acagcgtgtt ctgctgaaag acttccaggg cgatatgcgg ctggtgaaag
     5761 aagcgtttcc cgaaatggat tctttgcctc aggaggtgcg tgatgccaca tcccgtctga
     5821 gtgcggacta cttaatccat gatttgcaga cgggtcactt cgtgacagta ctgcgtttta
     5881 tttcgccact gatggttcgt cttggcgtac ctgaaaggcg attttatcaa ctgctggcag
     5941 cagtgttgag tgattacatg aacaaacatc cacaaatggc agagcgtttt gcgcttttct
     6001 cactcttcag gccacaaatc attcgcgtgg tgctgaaccc ggtaaaactg acctggccgg
     6061 acctggatgg cggcagtcgc atgctgccga attaccttga gaatctgcaa aatccgctgt
     6121 ggctggtaac tcaggaatat gaatcatgaa aaaaagtgtc gattttattg gtgtcgggac
     6181 agggccattt aatctcagca ttgctgcatt gtcacatcag atcgaagaac tgaactgtct
     6241 cttctttgac gaacatcctc atttttcctg gcatccgggt atgctggtac cggattgtca
     6301 tatgcagacc gtctttctga aagatctggt cagtgcagtt gcacctacaa atccctacag
     6361 ctttgttaac tatctggtga agcacaaaaa gttctatcgc ttccttacaa gcaggctacg
     6421 tacagtatcc cgtgaagagt tttctgacta tctccgctgg gctgctgaag atatgaataa
     6481 cctgtatttc agtcataccg ttgaaaatat tgatttcgac aaaaaaagtc gattgtttct
     6541 ggttcagacc agtcggggag aatattttgc ccgcaatatc tgccttggta caggaaaaca
     6601 accttattta ccaccctgtg tgaagcatgt gacacaatcc tgtttccatg ccagtgaaat
     6661 gaatcttcgt cggccggacc tgagtggaaa acggataacc gtggttggtg gaggacagag
     6721 tggtgcagac ctgttcctta atgcattacg cggggaatgg ggagaagcgg cggaaataaa
     6781 ctgggtctca cggcgtaata attttaacgc actggatgag gctgcttttg ctgatgagta
     6841 ttttacacct gaatatattt caggcttctc cggactgaag gaagatattc gccatcagtt
     6901 actggatgag cagaaaatga catcggatgg catcactgcc gattctttac tgaccattta
     6961 tcgtgagttg taccaccgtt ttgaagttct gagaaaacca agaaatatcc gtctgctacc
     7021 cagtcgctcg gtaataactc tggaaagtag tggtccgggc tggaggttat tgatggaaca
     7081 tcatctggat cagggcagag agagcctgga aagtgatgtg gtgattttcg ccacaggtta
     7141 ccgttctgca ttgccacaaa tacttccctc actgatgccc ttgatcacca tgcacgataa
     7201 gaacaccttt aaagtgcgtg atgacttcac tctggaatgg agtggcccga aagaaaataa
     7261 catctttgcg gtcaacgcca gcatgcaaac tcatggcatc gccgaacccc agctcagcct
     7321 gatggcctgg cgatctgcac gtattcttaa tcgcgtactg gggcgtgatt tattcgatct
     7381 cagtatgccg cccgcactga ttcagtggcg cagcggcagc cggaaaaaac cgcagccgga
     7441 ggctgcttct ttaactcact atacagcaaa tattcaggaa taacgatgat gcgcaaaaag
     7501 tatatgcccc gggctcttgg tccgctgctt cttgtcgtgc tgtcaccagc tgtcgcccag
     7561 caaaatgatg ataatgagat catagtgtct gccagccgca gcaatcgaac tgtagcggag
     7621 atggcgcaaa ccacttgggt tatcgaaaat gccgaactgg agcagcagat tcagggcggt
     7681 aaagagctga aagacgcact ggctcagtta atccccggcc ttgatgtcag cagccagagt
     7741 cgaaccaact acggtatgaa catgcgtggc cgcccgctgg ttgtcctgat tgacggtgtg
     7801 cgcctcaact cttcacgttc cgacagccga caactggact ctgtcgatcc ttttaatatc
     7861 gaccatattg aagtgatctc cggcgcgacg gccctgtacg gtggcgggag taccggaggg
     7921 ttgatcaaca tcgtgaccaa aaaaggtcag ccggaaacca tgatggagtt tgaggctggc
     7981 acaaaaagtg gctttaacag cagtaaagat cacgatgagc gcattgccgg tgctgtctcc
     8041 ggcggaaatg accatatctc cggacgtctt tccgtggcat atcagaaatt tggcggctgg
     8101 tttgacggta acggcgatgc caccctgctt gataacaccc agaccggcct gcagcactcc
     8161 aatcggctgg acatcatggg aaccggtacg ctgaacatcg atgaatcccg gcagcttcaa
     8221 ctgataacgc agtactataa aagtcaggga gacgacaatt acgggcttaa tctcgggaaa
     8281 ggcttttccg ccatcagcgg gagcagcaca ccatacgtca gtaaggggct gaattctgac
     8341 cgcattcccg gcactgagcg gcatttgatc agcctgcagt actctgacag tgatttcctg
     8401 ggacaggaac tggtcggtca ggtttactac cgcgatgagt cgttgcggta ctacccgttc
     8461 ccgacggtaa atgcgaataa acaggcgacg gctttctcct cgtcacagca ggataccgac
     8521 cagtacggca tgaaactgac tctgaacagc caactgatgg acggctggca aatcacctgg
     8581 gggctggatg ctgagcatga gcgctttacc tccaaccaga tgttcttcga tctggctcag
     8641 gcaagtgctt ccggagggct gaacaaccat aagatttaca ccaccgggcg ctatccgtca
     8701 tatgacatca ccaatctggc ggccttcctg caatccagct atgacattaa tgatattttt
     8761 accgttagcg gtggcgtacg ctatcagtat actgagaaca gggtagatga tttcatcgac
     8821 tacacgcagc aacagaagat tgctgccggg aaggcgatat ctgccgacgc cattcctggt
     8881 ggttcggtag attacgataa ctttctgttc aatgctggtc tgctgatgca catcaccgaa
     8941 cgtcagcagg catggttcaa tttttcccag ggggtggcat tgccggatcc ggggaaatat
     9001 tatggtcgcg gcatctatgg tgcagcagtg aacggccatc tttccctgac aaagagcgtg
     9061 aacgtcagcg acagtaagct ggaaggcgtg aaagtcgatt cttatgaact gggctggcgc
     9121 tttaccggtg acaacctgcg gactcaaatc gcggcatatt actcgctttc caataagagc
     9181 gtggaaagga ataaagatct gaccatcagt gtgaaggacg acaggcgccg tatttacggc
     9241 gtggaaggtg cggtggacta cctgatcccg gatactgact ggagtaccgg tgtgaacttc
     9301 aatgtgctga aaaccgagtc gaaagtgaac ggtcaatggc aaaaatatga cgtgaaggaa
     9361 tcaagtccat cgaaagcgac agcttacatt aactgggcgc cggaaccgtg gagtctgcgt
     9421 gtacagagca ccacttcttt cgacgtaagc gatgcagagg gtaacgatat taatggttac
     9481 actaccgtcg attttatcag tagttggcag cttccggtgg gaacactcag cttcagcgtt
     9541 gagaacctct tcgaccgtga ctataccact gtctggggac agcgtgcacc tctgtactac
     9601 agcccgggtt acggccctgc ttcactgtac gactacaaag gccggggccg aacctttggt
     9661 ctgaactact cagtgctgtt ctgacgggga tgcttttgca acaagggtat gctgtaaaca
     9721 acatggtcct tggtggccat gttgtttaca gccagtataa tatacagcct taacaagata
     9781 ttccgtctcc ggaatggact gttcaccact gaataacatt atttctgttt tatggatctt
     9841 tgactgaaat ttatcgcata tcctcatttc attgtccgtc tgaaaactaa ccttacaagt
     9901 aagcgtcgtc tcagcaccgt ctggcagatc ctgaaattcc tgagaggatg atctg
//
LOCUS       DAJVSY010000154         9895 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.156, whole genome shotgun sequence.
ACCESSION   DAJVSY010000154 DAJVSY010000000
VERSION     DAJVSY010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9895
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.156"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(55..1338)
                     /gene="aroA"
                     /locus_tag="OQQ19_003422"
     CDS             complement(55..1338)
                     /gene="aroA"
                     /locus_tag="OQQ19_003422"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HCS1804920.1"
                     /translation="MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNL
                     LDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPL
                     AAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGG
                     NVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQ
                     HYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRF
                     ADVLEKMGATICWGDDYISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNI
                     YNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFS
                     LVALSDTPVTILDPKCTAKTFPDYFEQLARISQAA"
     gene            complement(1409..2497)
                     /gene="serC"
                     /locus_tag="OQQ19_003423"
     CDS             complement(1409..2497)
                     /gene="serC"
                     /locus_tag="OQQ19_003423"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HCS1804921.1"
                     /translation="MAQIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGK
                     EFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYW
                     AASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAID
                     ETPDFGKDVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKA
                     NIACPSILDYSIFNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELL
                     YGVIDNSDFYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGM
                     RASIYNAMPLEGVKALTDFMVEFERRHG"
     gene            complement(2696..3388)
                     /locus_tag="OQQ19_003424"
     CDS             complement(2696..3388)
                     /locus_tag="OQQ19_003424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF421 domain-containing protein"
                     /protein_id="HCS1804922.1"
                     /translation="MKAFDLHRMAFDKVPFDFLGEVALRSLYTFVLVFLFLKMTGRRG
                     VRQMSLFEVLIILTLGSAAGDVAFYDDVPMVPVLIVFITLALLYRLVMWLMAHSEKLE
                     DLLEGKPVVIIEDGELAWSKLNNSNMTEFEFFMELRLRGVEQLGQVRLAILETNGQIS
                     VYFFEDDKVKPGLLILPSDCTQRYKVVPESADYACIRCSEIIHMKAGEKQLCPRCANP
                     EWTKASRAKRVT"
     gene            3518..5278
                     /locus_tag="OQQ19_003425"
     CDS             3518..5278
                     /locus_tag="OQQ19_003425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaO-like family protein"
                     /protein_id="HCS1804923.1"
                     /translation="MTQTFIPGKDAALEDSIARFQQKLSDLGFQIEEASWLNPVPNVW
                     SVHIRDKECALCFTNGKGATKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVH
                     YPNEKWFPLTENDDVPEGLLDDRLRAFYDPENELTGSMLIDLQSGNEDRGICGLPFTR
                     QSDNQTVYIPMNIIGNLYVSNGMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPE
                     IPADVLARYPAVVEAIETLEAEGFPIFAYDGSLGGQYPVICVVLFNPANGTCFASFGA
                     HPDFGVALERTVTELLQGRGLKDLDVFTPPTFDDEEVAEHTNLETHFIDSSGLISWDL
                     FKQDADYPFVDWNFSGTTEEEFATLMAIFNKEDKEVYIADYEHLGVYACRIIVPGMSD
                     IYPAEDLWLANNSMGSHLRETILSLPGSEWEKEDYLNLIEQLDEEGFDDFTRVRELLG
                     LATGSDNGWYTLRIGELKAMLALAGGDLEQALVWTEWTMEFNSSVFSPERANYYRCLQ
                     TLLLLAQEEDRQPLQYLNAFVRMYGADAVEAASAAMSGEAAFYGLQPVDSDLHAFAAH
                     QSLLKAYEKLQRAKAAFWAK"
     gene            5684..6541
                     /gene="focA"
                     /locus_tag="OQQ19_003426"
     CDS             5684..6541
                     /gene="focA"
                     /locus_tag="OQQ19_003426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter FocA"
                     /protein_id="HCS1804924.1"
                     /translation="MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVF
                     ISIAFVFYITATTGTGTMPFGMAKLVGGICFSLGLILCVVCGADLFTSTVLIVVAKAS
                     GRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVHHT
                     FIEAVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIP
                     MGIVIRDFASPEFWTAVGSAPENFSHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWV
                     IYLRENDHH"
     gene            6596..8878
                     /gene="pflB"
                     /locus_tag="OQQ19_003427"
     CDS             6596..8878
                     /gene="pflB"
                     /locus_tag="OQQ19_003427"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HCS1804925.1"
                     /translation="MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFL
                     AGATEATTTLWDKVMEGVKLENRTHAPVDFDTAVASTITSHDAGYINKQLEKIVGLQT
                     EAPLKRALIPFGGIKMIEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRC
                     RKSGVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKLAQFTSLQADLENGVNLEQTI
                     RLREEIAEQHRALGQMKEMAAKYGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMS
                     FGRTSTFLDVYIERDLKAGKITEQEAQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIW
                     ATESIGGMGLDGRTLVTKNSFRFLNTLYTMGPSPEPNMTILWSEKLPLNFKKFAAKVS
                     IDTSSLQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGG
                     VDEKLKMQVGPKSEPIKGDLLNYDEVMERMDHFMDWLAKQYITALNIIHYMHDKYSYE
                     ASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQ
                     FGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSVLTITSNVVYGKKTGNTPDGR
                     RAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVR
                     KTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRF
                     NSLTKEQQQDVITRTFTQSM"
     gene            9070..9810
                     /gene="pflA"
                     /locus_tag="OQQ19_003428"
     CDS             9070..9810
                     /gene="pflA"
                     /locus_tag="OQQ19_003428"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase 1-activating protein"
                     /protein_id="HCS1804926.1"
                     /translation="MSVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWD
                     THGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHT
                     CLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK
                     NVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYK
                     LDGVKPPKKETMERVKGILEQYGHKVMF"
BASE COUNT         2534 a         2488 c         2354 g         2519 t
ORIGIN      
        1 atgtgccgac gttttgataa agaaatattt ggctatttat tgcccgttgt tcattcaggc
       61 tgcctggcta atccgcgcca actgctcgaa ataatccgga aatgttttgg ccgtacattt
      121 gggatcaaga atcgtcactg gtgtatctga caacgccacc agcgagaaac acatcgccat
      181 ccggtgatca ttgtatgtcg cgatctcggc aaagttcagt ttttccggtg gagtgatacg
      241 aatgtaatcg tgcccctctt ctacttccgc accgacttta cgcagttctg ttgccatcgc
      301 aaacaggcga tcggtttctt taacacgcca gttatagata ttgcgcagcg tggtggtgcc
      361 ttttgcaaat aacgccgccg tggcaatggt catcgccgca tcgggaatat ggttcatatc
      421 catatcaata gcgttcagtt caccacgcgt gcaggaaata taatcatcgc cccagcaaat
      481 ggtcgcgccc attttttcca gcacatcagc aaagcgaata tcaccctgca tactgttacg
      541 tccaataccg gtcactttta cagtgccgcc tttgattgct gctgctgcca gaaagtaaga
      601 agccgaagat gcatcgcctt cgaccaaata agtacccgga gactgataag actgtccgcc
      661 ttttacgaca aattgttgat agtgctgatt ttcaatttca acaccaaacg tcttcatcag
      721 attgagtgtg atgtcgatat aaggtttaga aaccagatcg cctttaatac gaatcaccgt
      781 atcttccggc gcaagaggcg cagtcattaa cagtgcggtg aggaattggc tggaaacgga
      841 gccatcaacg tcaacgttgc cgccagtaaa gccgccctgt aaacgcaacg gcggataatt
      901 ttcttgttcc aggtaagtga tcttcgcccc gcccaggcgc agcgcatcca ccagatgacc
      961 aatcgggcgt tctttcatac gcggctcacc ggtcagcaca atatcattgc tacccagaca
     1021 aagagctgcc gccagcggac gcattgccgt tccggcgtta ccgaggaaca actccagggc
     1081 accttctgcg tgtaatggac cgccgttacc gataatttcg caacgcgtac gatcggctga
     1141 aagcgtatag cttaccccta acgctgttaa tgcattcagc atatggcgca cgtcatcgct
     1201 atccagcaga ttggttaata ctgttttgcc gtgtgctaat gccgccagca ataaagcgcg
     1261 gttagaaacg ctcttggaac cgggcagatt aatagtgcca tcgacacgag cgatgggttg
     1321 taacgtcagg gattccatga actcaactct ctacaacaga aataaaaacc ccacaggctg
     1381 gctgtgggga ttaagcaaaa tttcggcatt aaccgtgacg gcgttcgaac tcaaccatga
     1441 agtctgtcag cgctttaacg ccttccagcg gcatggcgtt ataaatagaa gcgcgcattc
     1501 cgccgaccac acggtgacct ttcagtgcat gaaggccagc agcaaaagac tcttcaagga
     1561 acaatttgtc aagcgcactg tccgccaact ggaacggcac gttcatccgc gaacggttag
     1621 ctttcgccac gtcattgcgg tagaaatcgc tgttatcaat caccccatat agcagttctg
     1681 ctttttgctg attgatttta tccatttcag ctacaccgcc gttcgctttc agccatttaa
     1741 agaccagacc agatagatac caggcaaatg tcggcggcgt gttaaacatg gagccgttat
     1801 cgttgaagat ggaataatcc agtatcgacg gacacgcgat attcgctttg cccagcaaat
     1861 cttcacgaac gatgacgatt gtcaggccag ccgggccgat atttttctgc gcgccagcgt
     1921 aaatcacgcc ataacggctg acgtcaatcg gacgggaaag aatggttgaa gagaagtcgg
     1981 cggcgaccac cacatctttg ccgaagtctg gcgtttcgtc gatggcgata ccgtcgatgg
     2041 tttcattcgg gcagtaatgc atataagcag cattatcaga gagttgccat tcacgcattg
     2101 gcttaaccgc gcgcagacca tcaacagtca ctttggcgtc aaagacatta ggcgtgcagt
     2161 attttttcgc ttctttaatg gcacttgccg cccagtaacc ggcatcaaca taatctgcgg
     2221 tggttttatc accgagaata ttcagcggta ccgcagcaaa ctgaccgcga ccaccgccat
     2281 ggcagaataa taccttgtag ttggagggga cattaagaag atcgcgaaaa tccttctcgg
     2341 cttcctctgc aacctgaatg aactctttgc cacggtgact cacttccatc accgacgtac
     2401 caagaccgtt ccagtcgcgc agttcctgtt gagcctgttt aagcacctct gccggtagca
     2461 ttgccggacc agaactaaaa ttgaagattt gagccatttc ccctcaccac gttgcgttgc
     2521 tattaacccg cggtcaatcg attgcgacca caggtaatac attattcctg tggctatcgg
     2581 ttttatcatt cagtgacaca catcgcaatg agtaaaaccg ttgagggcaa aaatgaggct
     2641 tgcatcacac aaaagaatct ctcggattat tagcaaaaag ccgatgtttt tactgtcagg
     2701 tcacccgttt tgcccgactt gccttcgtcc attctggatt tgcacagcgc ggacataatt
     2761 gtttttcccc cgctttcata tgaatgattt cactacaacg aatacaggca tagtccgccg
     2821 actccggcac cactttgtaa cgctgcgtac aatcactggg taaaataagt aaacccggtt
     2881 tcaccttgtc atcttcaaag aaatagacac tgatttgccc gttggtttcg agaatcgcca
     2941 gacgtacctg ccccagctgc tccacgccac gcaatcgtag ctccataaag aactcaaatt
     3001 ccgtcatgtt ggagttattg agtttcgacc aggccagctc gccatcttca ataataacaa
     3061 ccggcttacc ttccagtaga tcttccagtt tttcactgtg cgccatcaac cacattacca
     3121 ggcggtataa caacgccaga gtgataaaga cgataagtac cggcaccatc ggcacatcat
     3181 cataaaacgc cacatctccc gccgctgaac ccagcgtgag aatgattaac acttcaaaca
     3241 gcgacatctg tcgcacaccg cgtcttccgg tcattttgag gaacaaaaaa accagtacaa
     3301 aggtataaag actacgtagt gcaacttcgc caaggaaatc aaaaggcact ttatcaaatg
     3361 ccatacggtg gagatcgaac gccttcattt ttatgctctt atcgtggttt attcgctaaa
     3421 agcatagtca acagttcatc ggcatggcgg cggtgatagc gcctttgaga taaaacccgt
     3481 attattgcgc gctttccgta cgactaaagt gattttcatg acgcaaacat ttatccccgg
     3541 caaagatgcc gctctggaag attccatcgc tcgcttccag caaaaacttt cagacctcgg
     3601 ctttcagatt gaagaggcct cctggctgaa tcctgtgcct aacgtctggt ctgtacatat
     3661 tcgcgacaaa gagtgcgcac tgtgttttac caacggtaaa ggcgcaacca aaaaagcggc
     3721 gctggcttct gcacttggtg aatatttcga gcgtctctca accaactact tttttgctga
     3781 tttctggctg ggcgaaacca tcgccaacgg tccgttcgtg cattatccca acgaaaaatg
     3841 gttcccactg accgaaaatg acgatgtgcc agaaggacta ctcgatgacc gtctgcgcgc
     3901 gttttatgat ccggagaatg aactgaccgg cagcatgctg attgacctac aatccggtaa
     3961 cgaagatcgt ggtatttgcg gcctgccgtt tacgcgtcag tccgacaatc agaccgttta
     4021 tattccgatg aatatcattg gtaacctgta cgtctccaac ggtatgtccg caggtaatac
     4081 ccgcaacgaa gcacgcgttc agggattgtc tgaagttttc gaacgctacg tgaaaaaccg
     4141 cattattgct gaaagcatca gcctgccaga gatcccggca gacgtgctgg cgcgttaccc
     4201 agcggtggtt gaagcgatcg aaacactgga agcagaaggt ttcccgatct tcgcatatga
     4261 tggttccctt ggcggccagt atccggtgat ttgcgtggta ctgttcaatc ctgctaacgg
     4321 tacctgcttt gcctctttcg gtgcgcatcc tgattttggc gtagcactgg aacgtaccgt
     4381 gaccgagctg ctgcaaggtc gtggcctgaa agatttggat gtgtttactc cgccaacctt
     4441 cgatgatgaa gaagtcgctg aacataccaa cctcgaaacg cactttatcg attccagcgg
     4501 tttaatctcc tgggacctgt tcaagcagga tgccgattat ccgtttgtgg actggaattt
     4561 ctccggcacc acggaagaag agtttgctac gctgatggct atcttcaaca aagaagataa
     4621 agaagtttat attgccgatt acgagcatct gggcgtttat gcttgccgta ttatcgtgcc
     4681 tggcatgtcc gatatttatc cggctgaaga tctgtggctc gcgaataaca gtatgggcag
     4741 ccatttacgt gaaacgattc tttcgctacc aggcagcgag tgggaaaaag aagattacct
     4801 gaacctcatc gagcaactgg atgaagaagg ttttgatgac tttacccgcg tgcgtgagct
     4861 gttgggtctg gcgaccgggt cggataacgg ttggtacacc ctgcgtatcg gtgaattaaa
     4921 agccatgctg gcgctggctg gtggcgatct ggaacaggct ctggtctgga ccgaatggac
     4981 gatggagttt aactcatcag tatttagtcc ggaacgcgcc aactattatc gctgcctgca
     5041 aacgttgtta ttactggcac aggaagaaga tcgccagccg ctgcaatatc tgaatgcgtt
     5101 tgttcgcatg tacggcgcag atgccgtgga agccgccagt gcggcaatga gcggcgaagc
     5161 ggcgttttac ggcctgcaac cggtagatag cgatctgcac gcgtttgctg cacatcagtc
     5221 gttgttgaag gcctacgaaa agctgcagcg cgccaaagca gcattctggg caaaataaaa
     5281 tcaaatagcc tacgcaatgt aggcttaatg attagtctga gttatattac ggggcgtttt
     5341 tttaatgccc cgctttacat atatttgcat taataaaata attgtaatta taaggttaaa
     5401 tatcggtaat ttgtatttaa taaatacgat cgatattgtt actttattcg cctaatgctc
     5461 ccttttaatt aactatttta gcggaggatg cggaaaaaat tcaactcatt tgttaatttt
     5521 taaaatttat ttttatttgg ataatcaaat atttactccg tatttgcata aaaaccatgc
     5581 gagttacgga cctataagcc aggcgagata tgatctatat caatttctca tctataatgc
     5641 tttgttagta tctcgtcgcc gacttaataa agagagagtt agtgtgaaag ctgacaaccc
     5701 ttttgatctt ttacttcctg ctgcaatggc caaagtggcc gaagaggcgg gtgtctataa
     5761 agcaacgaaa catccgctta agactttcta tctggcgatt accgccggtg ttttcatctc
     5821 aatcgcattc gtcttctata tcacagcaac cactggcaca ggcacaatgc ccttcggcat
     5881 ggcaaaactg gttggcggca tttgcttctc tctggggctg attctttgtg ttgtctgcgg
     5941 agctgatctc tttacttcca ccgtgttgat tgttgttgct aaggcgagtg ggcgcatcac
     6001 ctggggtcag ttggcgaaaa actggctaaa tgtctatttt ggcaacctgg tcggcgcact
     6061 gctgtttgta cttttaatgt ggctttccgg cgagtatatg accgcaaatg gtcaatgggg
     6121 actaaacgtc ctacaaaccg ccgaccacaa agtgcaccat acttttattg aggccgtctg
     6181 tcttggtatc ctggcaaacc tgatggtatg tctggcagta tggatgagtt attctggccg
     6241 cagcctgatg gacaaagcgt tcattatggt gctgccggtc gcgatgtttg ttgccagcgg
     6301 ttttgagcac agtatcgcaa acatgtttat gatcccgatg ggtattgtaa tccgcgactt
     6361 cgcatctccg gaattctgga ccgctgtcgg ttctgcaccg gaaaattttt ctcacctgac
     6421 cgtgatgaac ttcatcactg ataacctgat cccggttacg atcggtaata ttatcggcgg
     6481 tggtttgttg gttgggttga catactgggt catttacctg cgtgaaaacg atcaccatta
     6541 atggttgtcg aagtacgcag taaataaaaa atccacttaa gaaggtaggt gttacatgtc
     6601 cgagcttaat gaaaagttag ccacagcctg ggaaggtttt accaaaggtg actggcagaa
     6661 tgaagtaaac gtccgtgact tcattcagaa aaactacact ccgtacgagg gtgacgagtc
     6721 cttcctagct ggcgctactg aagcgaccac caccctgtgg gacaaagtaa tggaaggcgt
     6781 taaactggaa aaccgcactc acgcgccagt tgactttgac accgctgttg cttccaccat
     6841 cacctctcac gacgctggct acatcaacaa gcagcttgag aaaatcgttg gtctgcagac
     6901 tgaagctccg ctgaaacgtg ctcttatccc gttcggtggt atcaaaatga tcgaaggttc
     6961 ctgcaaagcg tacaaccgcg aactggatcc gatgatcaaa aaaatcttca ctgaataccg
     7021 taaaactcac aaccagggcg tgttcgacgt ttacactccg gacatcctgc gttgccgtaa
     7081 atctggtgtt ctgaccggtc tgccagatgc atatggccgt ggccgtatca tcggtgacta
     7141 ccgtcgcgtt gcgctgtacg gtatcgacta cctgatgaaa gacaaactgg cacagttcac
     7201 ttctctgcag gctgatctgg aaaacggcgt aaacctggaa cagactatcc gtctgcgcga
     7261 agaaatcgct gaacagcacc gcgctctggg tcagatgaaa gaaatggctg cgaaatacgg
     7321 ctacgacatc tctggtccgg ctaccaacgc tcaggaagct atccagtgga cttacttcgg
     7381 ctacctggct gctgttaagt ctcagaacgg tgctgcaatg tccttcggtc gtacctccac
     7441 cttcctggat gtgtacatcg aacgtgacct gaaagctggc aagatcaccg aacaagaagc
     7501 gcaggaaatg gttgaccacc tggtcatgaa actgcgtatg gttcgcttcc tgcgtactcc
     7561 ggaatacgat gaactgttct ctggcgaccc gatctgggca accgaatcta tcggtggtat
     7621 gggcctcgac ggtcgtaccc tggttaccaa aaacagcttc cgtttcctga acaccctgta
     7681 caccatgggt ccgtctccgg aaccgaacat gaccattctg tggtctgaaa aactgccgct
     7741 gaacttcaag aaattcgccg ctaaagtgtc catcgacacc tcttctctgc agtatgagaa
     7801 cgatgacctg atgcgtccgg acttcaacaa cgatgactat gctatcgctt gctgcgtaag
     7861 cccgatgatc gttggtaaac aaatgcagtt cttcggtgcg cgtgcaaacc tggcgaaaac
     7921 catgctgtac gcaatcaacg gcggcgttga cgaaaaactg aaaatgcagg ttggtccgaa
     7981 gtctgaaccg atcaaaggcg atctcctgaa ctacgatgaa gtgatggagc gcatggatca
     8041 cttcatggac tggctggcta aacagtacat cactgcactg aacatcatcc actacatgca
     8101 cgacaagtac agctacgaag cctctctgat ggcgctgcac gaccgtgacg ttatccgcac
     8161 catggcgtgt ggtatcgctg gtctgtccgt tgctgctgac tccctgtctg caatcaaata
     8221 tgcgaaagtt aaaccgattc gtgacgaaga cggtctggct atcgacttcg aaatcgaagg
     8281 cgaatacccg cagtttggta acaatgatcc gcgtgtagat gacctggctg ttgacctggt
     8341 agaacgtttc atgaagaaaa ttcagaaact gcacacctac cgtgacgcta tcccgactca
     8401 gtctgttctg accatcactt ctaacgttgt gtatggtaag aaaactggta acaccccaga
     8461 cggtcgtcgt gctggcgcgc cgttcggacc gggtgctaac ccgatgcacg gtcgtgacca
     8521 gaaaggtgct gtagcgtctc tgacttccgt tgctaaactg ccgtttgctt acgctaaaga
     8581 tggtatctcc tacaccttct ctatcgttcc gaacgcactg ggtaaagacg acgaagttcg
     8641 taagaccaac ctggctggtc tgatggatgg ttacttccac cacgaagcat ccatcgaagg
     8701 tggtcagcac ctgaacgtta acgtgatgaa ccgtgaaatg ctgctcgacg cgatggaaaa
     8761 cccggaaaaa tatccgcagc tgaccatccg tgtatctggc tacgcagtac gtttcaactc
     8821 gctgactaaa gaacagcagc aggacgttat tactcgtacc ttcactcaat ctatgtaatt
     8881 agatttgact gaaatcgtac agtaaaaagc gtacaataaa ggctccacga aagtggggcc
     8941 ttttttagca cgagagcctt ttttgtcagc tatctatact ttaaggtgac tgccaaaaca
     9001 gactcgacgt agccttcgag ctgcgcacca acacggcctc agatgggcca catctggaga
     9061 aacaccgcaa tgtcagttat tggtcgcatt cactcctttg aatcctgtgg aaccgtagac
     9121 ggcccgggta ttcgctttat cacctttttc cagggctgcc tgatgcgctg cctgtattgt
     9181 cataaccgcg acacctggga cacgcatggc ggtaaagaag ttaccgttga agatttgatg
     9241 aaggaagtgg tgacctatcg ccactttatg aacgcttccg gcggcggcgt taccgcatcc
     9301 ggcggtgaag caatcctgca agctgagttt gttcgtgact ggttccgcgc ctgcaaaaaa
     9361 gaaggcattc atacctgtct ggacaccaac ggttttgttc gtcgttacga tccggtgatt
     9421 gatgaactgc tggaagtaac cgacctggta atgctcgatc tcaaacagat gaacgacgag
     9481 atccaccaaa atctggttgg agtttccaac caccgcacgc tggagttcgc caaatatctg
     9541 gcgaacaaaa atgtgaaggt gtggatccgc tacgttgttg tcccaggctg gtctgacgat
     9601 gacgattcag cgcatcgcct cggtgaattt acccgtgata tgggcaacgt tgagaaaatc
     9661 gaactcctcc cctaccacga gctgggcaaa cacaaatggg tggcaatggg tgaagagtac
     9721 aaactcgacg gtgttaaacc acctaagaaa gagaccatgg aacgcgtgaa aggcattctt
     9781 gagcagtacg gtcataaggt aatgttctaa tttccccgta aagcggcaac tttattgagt
     9841 tgccgctttt ttattccgcg cttcattctg ctacagtgtt tttaacacat tttat
//
LOCUS       DAJVSY010000155         9807 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.157, whole genome shotgun sequence.
ACCESSION   DAJVSY010000155 DAJVSY010000000
VERSION     DAJVSY010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9807
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.157"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            124..744
                     /gene="fklB"
                     /locus_tag="OQQ19_003429"
     CDS             124..744
                     /gene="fklB"
                     /locus_tag="OQQ19_003429"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015742582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HCS1804927.1"
                     /translation="MTTPTFDTIEAQASYGIGLQVGQQLSESGLEGLLPEALVAGIAD
                     ALEGKHPAVPVDVVHRALREIHERADAVRRQRFQAMAAEGVKYLEENAKKEGVNSTES
                     GLQFRVINQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNGVIPGWIE
                     ALTLMPVGSKWELTIPQELAYGERGAGASIPPFSTLVFEVELLEIL"
     gene            1053..2465
                     /gene="cycA"
                     /locus_tag="OQQ19_003430"
                     /gene_synonym="dagA"
     CDS             1053..2465
                     /gene="cycA"
                     /locus_tag="OQQ19_003430"
                     /gene_synonym="dagA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-serine/D-alanine/glycine transporter"
                     /protein_id="HCS1804928.1"
                     /translation="MVDQVKVVADDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFLG
                     SGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYF
                     TGWTYWFCWVVTGMADVVAITAYAQFWFPDLSDWVASLAVIVLLLTLNLATVKMFGEM
                     EFWFAMIKIVAIVSLIVVGLVMVAMHFQSPTGVEASFAHLWNDGGWFPKGLSGFFAGF
                     QIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSV
                     VPEKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKA
                     FAKLSKRAVPAKGLTFSCICLLGGVVMLYVNPSVIGAFTMITTVSAILFMFVWTIILC
                     SYLVYRKQRPHLHEKSIYKMPLGKLMCWVCMAFFVFVVVLLTLEDDTRQALLVTPLWF
                     IALGLGWLFIGKKRAAELRK"
     gene            complement(2510..3172)
                     /gene="ytfE"
                     /locus_tag="OQQ19_003431"
     CDS             complement(2510..3172)
                     /gene="ytfE"
                     /locus_tag="OQQ19_003431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster repair protein YtfE"
                     /protein_id="HCS1804929.1"
                     /translation="MAYRDQPLGELALSIPRASALFRKYNMDYCCGGKQTLARAAARK
                     ELDVEVIEAELAKLAEQPIEKDWRSAPLAEIIDHIIVRYHDRHREQLPELILQATKVE
                     RVHADKPSVPKGLTKYLTMLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEH
                     DEAGELLEVIKHTTNNVTPPPEACTTWKAMYNGINELIDDLMDHISLENNVLFPRALA
                     GE"
     gene            complement(3280..4245)
                     /locus_tag="OQQ19_003432"
     CDS             complement(3280..4245)
                     /locus_tag="OQQ19_003432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418631.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1804930.1"
                     /translation="MISGVLYALLAGLMWGLIFVGPLIVPEYPAMLQSMGRYLALGLI
                     ALPIAWLGRVRLRQLARRDWLTALMLTMMGNLIYYFCLASAIQRTGAPVSTMIIGTLP
                     VVIPVFANLLYSQRDGKLAWGKLAPALVCIGIGLACVNIAELNHGLPDFDWARYTSGI
                     VLALVSVVCWAWYALRNARWLRENPDKHPMMWATAQALVTLPVSLIGYLVACYWLNTQ
                     TPDFSLPFGPRPLVFISLMVAIAVLCSWVGALCWNVASQRLPTVILGPLIVFETLAGL
                     LYTFLIRQQMPPLMTLSGIALLVVGVVIVVRAKPEKPLTESVSES"
     gene            complement(4353..5213)
                     /gene="qorB"
                     /locus_tag="OQQ19_003433"
     CDS             complement(4353..5213)
                     /gene="qorB"
                     /locus_tag="OQQ19_003433"
                     /EC_number="1.6.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H:quinone oxidoreductase"
                     /protein_id="HCS1804931.1"
                     /translation="MIAITGATGQLGHYIIESLMKTVPASQIVAIVRNPAKAQALAAQ
                     GITVRQADYGDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYT
                     SLLHADTSPLGLADEHIETEKMLADSGIVYTLLRNGWYSENYLASAPAALEHGVFIGA
                     AGDGKIASATRADYAAAAARVISEAGHEGKVYELAGDSAWTLTQLAAELTKQSGKQVT
                     YQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDNSKTLSKLIGRPTTTLAE
                     SVSHLFNVNN"
     gene            5302..5682
                     /locus_tag="OQQ19_003434"
     CDS             5302..5682
                     /locus_tag="OQQ19_003434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418633.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HCS1804932.1"
                     /translation="MSQVSLSQQLKEGNLFAEQCPSREVLKHVTSRWGVLILVALREG
                     THRFSDLRRKIGGVSEKMLAQSLQALEQDGFLNRIAYPVVPPHVEYSLTPLGEQVSEK
                     VAALADWIELNLPEVLAVRDERAA"
     gene            complement(5811..7754)
                     /gene="cpdB"
                     /locus_tag="OQQ19_003435"
     CDS             complement(5811..7754)
                     /gene="cpdB"
                     /locus_tag="OQQ19_003435"
                     /EC_number="3.1.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2',3'-cyclic-nucleotide 2'-phosphodiesterase"
                     /protein_id="HCS1804933.1"
                     /translation="MIKFSATLLATLIAASVNAATVDLRIMETTDLHSNMMDFDYYKD
                     TATEKFGLVRTASLINDARNEVKNSVLVDNGDLIQGSPLADYMSAKGLKAGDVHPVYK
                     ALNTLDYTVGTLGNHEFNYGLDYLKNALAGAKFPYVNANVIDARTKQPMFTPYLIKDT
                     EVVDKDGKKQTLKIGYIGVVPPQIMGWDKANLSGKVTVNDITETVRKYVPEMREKGAD
                     VVVVLAHSGLSADPYKVMAENSVYYLSEIPGVNAIMFGHAHAVFPGKDFADIEEADIT
                     KGTLNGVPAVMPGMWGDHLGVVDLQLSNDSGKWQVTQAKAEARPIYDIANKKSLAAED
                     SKLVETLKADHDATRQFVSKPIGKSADNMYSYLALVQDDPTVQVVNNAQKAYVEHYIQ
                     GDPDLAKLPVLSAAAPFKVGGRKNDPASYVEVEKGQLTFRNAADLYLYPNTLIVVKAS
                     GKEVKEWLECSAGQFNQIDPNSTKPQSLINWDGFRTYNFDVIDGVNYQIDVTQPARYD
                     GECQMINANAERIKNLTFNGKPIDPNAMFLVATNNYRAYGGKFAGTGDRHIAFASPDE
                     NRSVLTAWIADESKRAGEIHPAADNNWRLAPIAGDKKLDIRFETSPSDKAAAFIKEKG
                     QYPMNKVATDDIGFAIYQVDLSK"
     gene            7944..8684
                     /gene="cysQ"
                     /locus_tag="OQQ19_003436"
     CDS             7944..8684
                     /gene="cysQ"
                     /locus_tag="OQQ19_003436"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HCS1804934.1"
                     /translation="MLDQVCQLARNAGDAIMQVYDGTKPMDVVSKADNSPVTAADIAA
                     HTVIMDGLRTLTPDIPVLSEEDPPGWEVRQHWQRYWLVDPLDGTKEFIKRNGEFTVNI
                     ALIDHGKPILGVVYAPVMNVMYSAAEGKAWKEECGVRKQIQVRDARPPLVVISRSHAD
                     AELKEYLQQLGEHQTTSIGSSLKFCLVAEGQAQLYPRFGPTNIWDTAAGHAVAAAAGA
                     HVHDWQGKPLDYTPRESFLNPGFRVSIY"
     gene            8896..9807
                     /locus_tag="OQQ19_003437"
     CDS             8896..9807
                     /locus_tag="OQQ19_003437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804935.1"
                     /translation="MLPRIRHNNFIGAVELFVKSSHTKTHSNNFFNNIQHAFKKKDWV
                     SNYDSLLTLWEFFRCATQIDKDSYQVLSSKNETVKAMDKFLISFSLKDNGAEYTMTLR
                     GSGFEYEEIPITINEYNSFMDFKNREFPLEQNRRLYAWDILQKKQSDIPKRIKGYIHQ
                     AIGDVSLGYALLEDIVSKLKRGKFELQIPGGGIKECDGWYIYEKIIDDNFAIVIESLG
                     FALKIYGGDERFRNGSSVVLEDEDYSLIYNFLVNAGCQQVELAEQVDAIVSANLAVDS
                     DITEEEICEKYKSTIEAFKKEQLALPV"
BASE COUNT         2396 a         2366 c         2507 g         2538 t
ORIGIN      
        1 acgggatatt gctattgttt ctttttcccc gggatttgtc atcattcctg tgacaaagtt
       61 ttacccaaag aagtgtggct gatatgctgc ccgctacttt tataccctaa gaaaggaaat
      121 acgatgacca ccccaacttt tgacaccatc gaagcgcaag caagctacgg cattggtttg
      181 caggtagggc aacaactgag tgaatctggc ctggaagggc tgctgccaga agcactggtt
      241 gcaggtattg ccgatgcgct ggaaggcaaa catccggctg ttccggttga tgtggtgcat
      301 cgcgcgctgc gtgaaatcca cgaacgcgcc gatgccgttc gtcgtcagcg tttccaggcg
      361 atggctgctg aaggtgtgaa atacctggaa gaaaacgcca aaaaagaagg tgtgaatagc
      421 accgaatctg gcctgcaatt ccgcgtgatc aaccagggtg aaggcgcaat tccggcacgt
      481 accgaccgcg ttcgtgttca ttacaccggt aaactgatcg acggcaccgt gtttgacagc
      541 tccgttgctc gtggtgaacc cgctgaattc ccggttaacg gcgtgatccc tggctggatt
      601 gaagcactga ctctgatgcc ggtaggttct aaatgggaac tgactatccc gcaggaactg
      661 gcatatggcg agcgcggcgc aggtgcatcc atccctccgt tcagcaccct ggtgtttgaa
      721 gtcgaactgc tggaaatcct ctaagcagcg cattctgttc ccctcgaacc agaggggagc
      781 aggcattcag caataaaccc ttcagtttgc caaacggcgc tattttgtgt tgcaaagacc
      841 ccgtaagcgt gtatttttgt gagatgtttc gcgttatcac cgtgatatga cactcacttt
      901 aaacataaaa ttaacattag atctaaatct tagtattcat cccgcgtatt gttacctaat
      961 atcgatgagt cccgatacag attcgtcgta tcatagactg actaaaggcc gtagagcctg
     1021 aacaacacag acaggtacag gaagaaaaaa acatggtaga tcaggtaaaa gtcgttgccg
     1081 atgatcaggc tccggctgaa cagtcgctac ggcgcaatct cacaaaccga catattcagc
     1141 ttattgccat tggcggtgcc attggtacgg ggttgtttct ggggtctggc aaaacgatta
     1201 gccttgccgg gccgtcgatc attttcgttt atatgatcat tggttttatg ctctttttcg
     1261 tgatgcgggc aatgggggaa ttgctgcttt cgaatctgga atacaaatct tttagtgact
     1321 tcgcttccga tttactcggg ccgtgggcag gatatttcac tggctggact tactggttct
     1381 gctgggttgt aaccggtatg gcagacgtgg tggcgatcac ggcttatgct cagttctggt
     1441 tccccgatct ctccgactgg gtcgcctcgc tggcggtgat agtgctgctg ctgacgctca
     1501 accttgccac cgtgaaaatg ttcggtgaga tggagttctg gtttgcgatg atcaaaatcg
     1561 tcgccatcgt gtcgctgatt gtcgtcggcc tggtcatggt ggcgatgcac tttcagtcac
     1621 cgactggtgt ggaagcgtca ttcgcgcatt tgtggaatga cggcggctgg ttcccgaaag
     1681 gtttaagtgg cttctttgcc ggattccaga tagcggtttt cgctttcgtg gggattgagc
     1741 tggtaggtac aacagctgcg gaaaccaaag atccggagaa atcactgcca cgcgcgatta
     1801 actccattcc gatccgtatc attatgttct acgtcttcgc gctgattgtg attatgtccg
     1861 tgacaccgtg gagttcggta gtcccggaga aaagcccgtt cgttgagctg tttgtgttgg
     1921 taggtttgcc tgcggctgcc agcgtgatca actttgtggt gctgacctct gcggcgtctt
     1981 ccgctaacag cggcgtcttc tctaccagcc gtatgctgtt tggtctggcg caggaaggtg
     2041 tggcaccgaa agcgttcgct aaactttcta agcgcgcagt accagcgaaa gggctgacct
     2101 tctcctgcat ctgcctgctc ggtggcgtgg tgatgctgta tgtgaatcct agcgtgattg
     2161 gtgcgttcac gatgattaca accgtttccg cgattctgtt tatgttcgtc tggacgatta
     2221 tcctttgctc gtacctggtg taccgcaaac agcgtcctca tctgcatgag aagtcgatct
     2281 acaagatgcc gctcggcaag ctgatgtgct gggtatgtat ggcgttcttt gtgttcgtgg
     2341 tcgtgttgct gacactggaa gatgacactc gccaggcgct gctggttacc ccgctgtggt
     2401 ttatcgcact ggggctgggc tggttgttta ttggtaagaa gcgggctgct gaactgcgga
     2461 aataaccgca ttatcatgct ggatggcgca atgccatcca gcttttagat cactcacccg
     2521 ccagcgcgcg tgggaacagt acattgtttt ccagactgat gtgatccatc aggtcatcaa
     2581 tcagttcatt aatgccgtta tacatcgctt tccaggtggt gcaggcttct ggcggcggtg
     2641 tgacgttatt ggtagtgtgt ttgatcactt ccagcagttc gcccgcttca tcgtgctcgc
     2701 tttccattac gctgattggc cccattgcct ggctgcccat gccttgtttg atcatcggga
     2761 agaggatctg ctcttctttc atcatgtggc tggaaagctc ttcatgcagc atggtcaggt
     2821 attttgtcag cccttttggc acgctcggtt tgtcggcgtg aacgcgctcg actttagtcg
     2881 cttgcaggat cagctccggc agttgctcgc ggtgacgatc gtggtagcgc acgatgatat
     2941 ggtcaatgat ttctgccagc ggggcgctac gccagtcttt ctcaatcggt tgttcagcaa
     3001 gctttgccag ttcagcttca atgacctcaa catccagttc tttacgtgcc gccgcgcgcg
     3061 ccagcgtctg cttaccgcca cagcagtaat ccatattata tttacgaaac agagctgaag
     3121 cgcgaggaat agagagcgcc agttcaccta aaggttggtc gcgataagcc atagctgata
     3181 cctcattctt aataagataa gatgtatttt aaatacatct ttaaggcaaa agctataacc
     3241 cttacgtagc agaggcttat ttaactcaca gccagtatgt caactttctg agacagattc
     3301 agttaaaggc ttttccggtt ttgctctgac tacaatgacc acgccaacca ctaacagcgc
     3361 gataccgctc agcgtcatca gcggcggcat ttgctggcgt atcaaaaagg tgtacagcaa
     3421 acctgccagt gtttcgaaaa cgatcagcgg cccgagaatc actgtcggta atcgctggct
     3481 ggcgacgttc cagcagagtg cgccaaccca tgagcaaagc acggctatcg caaccatcag
     3541 actaataaac accagcggac gggggccaaa aggtagggag aagtccggcg tttgcgtatt
     3601 cagccagtaa caggcgacga gatagccgat gagagaaacc ggcagtgtga ccagcgcctg
     3661 cgccgtcgcc cacatcatcg gatgtttgtc gggattctcc cgcagccagc gggcgttgcg
     3721 cagggcatac catgcccagc agaccacgga aactaacgct agcacgatgc ctgaggtata
     3781 acgtgcccag tcaaaatcgg ggagtccgtg gtttaactca gcaatattca cacacgccag
     3841 gccgatgcca atacaaacca gtgccggggc gagttttccc cacgcgagtt tgccgtcgcg
     3901 ctggctataa agcagattgg caaaaacggg aatcaccacc ggcagggtgc cgataatcat
     3961 cgtggaaaca ggcgcaccag tacgttgaat ggcactggca aggcagaagt aatagatgag
     4021 gttgcccatc atagtgagca tcaaggcggt aagccagtcg cgacgcgcca actgacgcag
     4081 acgcacgcgt cccagccagg caatgggcag cgcaattaac cctaacgcca gataacgccc
     4141 catcgactgc aacatcgccg ggtattccgg tacgatcaac ggcccgacaa aaataagccc
     4201 ccacatcaac cctgctaaca gggcgtacag cacgccgcta atcattactg gcatccattg
     4261 gtctgtcaga agaaagttca ggaagcagac atgattgctc ccggcatccc gtcattatta
     4321 gagaggatgc gggaggatgc cactttaatt aactagttat taacattaaa aagatggctt
     4381 acgctttcgg ctaacgttgt cgttgggcgg ccaatcaatt tgctaagcgt tttgctgtta
     4441 tcaaacagac cacctttcga tgcgccaacg tcagaatccg ccagcatatc cgccagtccg
     4501 tcgggcagtc cgacgctttt cagtgccgcg gcgaaatcgg cttcgctcag attttgatag
     4561 gtaacctgtt tgccgctctg tttggtcagc tctgccgcta actgtgtcaa cgtccaggca
     4621 ctatcgcccg ccagttcgta aaccttgcct tcgtgaccgg cttcgctaat cacgcgtgcc
     4681 gcagctgccg cataatctgc ccgcgttgct gaggcgattt tgccatcgcc cgccgcaccg
     4741 ataaatacgc cgtgttccag tgctgccggg gcgctggcga ggtagttttc gctgtaccag
     4801 ccgttgcgca gcagggtgta aacgatgcca gaatcagcca acattttctc cgtctcaatg
     4861 tgctcatcgg cgaggccgag cggggaggta tctgcatgta gcaggctggt ataagcgata
     4921 aatttcacgc cagccgcctt tgcggcatta ataacattac gatgctgcgg ggcacgttga
     4981 cccacttcgc tggaagagat cagcagtagt ttttccactc cctgaagtgc agatgtcagt
     5041 gcggcttcat cgccgtagtc agcctgacgc acggtaatgc cttgtgctgc cagagcctgg
     5101 gcttttgccg gattacgaac gatagccact atttggctgg caggaaccgt tttcatcaag
     5161 gattcaataa tatagtgacc aagttggcca gtggcaccag taatagcgat catgggaagt
     5221 ctccatcgtt ttgtcttgtg tttaaatacg ctaacaccta aacttacttt tagtaagtac
     5281 gtacaaaaag gtaagtatga aatgagtcag gttagcctgt cgcaacaact gaaagagggt
     5341 aatctctttg cggaacagtg cccgtcgcgc gaggtgttga aacacgtcac cagccgttgg
     5401 ggggtgttga ttctggtggc gctacgcgaa ggtactcatc gctttagcga cctgcggcgc
     5461 aaaatcggcg gggtgagcga aaagatgctt gcgcagtcgt tacaggcgtt agaacaggat
     5521 ggttttctta accgtatcgc gtatccggtg gtgccaccgc atgtggaata tagcctcacg
     5581 ccgctgggcg agcaggtgag cgaaaaggtt gctgcactgg cggactggat tgagttgaat
     5641 ttgcccgagg tgttggcggt gcgggatgaa cgtgcggcat aactgccgga tgcgctgagc
     5701 ttatctggtc tacggtgcat ggctggtagg gcggataaga tgcgccagca tcgcatccgc
     5761 caataaatgc cggatgcggt tgataattta tagaccgaaa aagaagtgtt ttacttactc
     5821 aaatccacct gataaatcgc aaacccgata tcatcggtcg cgactttatt catcggatat
     5881 tgccctttct ctttaataaa cgctgcggct ttatctgacg gggaagtttc gaaacggata
     5941 tccagtttct tatcgccagc tatcggtgct aaacgccagt tgttatctgc cgccgggtga
     6001 atttctcccg cacgtttcga ctcatcagca atccacgctg tcagcaccga gcggttctca
     6061 tccggtgaag caaaagcgat atgtctgtcg cccgtaccgg caaatttgcc gccgtaagcg
     6121 cgatagttat tggtggcaac gaggaacata gcgttcggat caatcggctt gccattaaag
     6181 gtcaggttct taatccgctc tgcattggca ttaatcatct ggcactcgcc gtcatagcgg
     6241 gcgggttggg taacatcaat ctgataattc acaccatcaa taacatcaaa gttataagtg
     6301 cggaaaccat cccagttgat gagtgactgt ggtttcgtgc tgttaggatc aatctggtta
     6361 aactgtccgg cggagcactc cagccactct ttcacctctt taccgctggc tttcactaca
     6421 atcagcgtat tggggtagag ataaagatcg gcggcattac ggaaggtcaa ctggcctttt
     6481 tccacctcca catagcttgc cgggtcattt ttgcgaccac caactttaaa cggtgcggca
     6541 gctgaaagca ccggcagttt tgccagatcc ggatcgccct gaatgtaatg ttcgacatac
     6601 gctttttgcg cgttgttcac gacttgcacg gtcggatcgt cctgcaccag cgccagatag
     6661 ctatacatat tgtcggcaga tttaccgatt ggcttgctga cgaactggcg tgtggcatcg
     6721 tgatcggctt tgagtgtttc taccagcttg ctgtcttccg ccgcgaggga ttttttattg
     6781 gcgatgtcgt aaatcggccg tgcttccgct ttcgcctgcg tcacctgcca tttaccgctg
     6841 tcattactga gttgtaagtc gaccacccca agatgatcgc cccacatgcc cggcattacc
     6901 gccggaacac cattcagcgt gcctttggtg atatcagcct cttcgatatc agcaaaatct
     6961 ttacccggga aaacggcgtg agcatggcca aacataatgg cgttaacgcc cggaatttca
     7021 ctgaggtaat aaactgagtt ttccgccatt actttatacg gatcggcaga cagcccggaa
     7081 tgcgccagaa cgacaacgac atcggcacct ttctcgcgca tttcaggcac gtatttgcgc
     7141 acggtttcgg taatatcatt caccgtcact tttccggata aattagcttt atcccagccc
     7201 atgatttgcg gcggcacgac gccaatatag ccaatcttca gcgtctgttt ttttccgtct
     7261 ttatcgacca cttcggtatc tttaattaaa tacggtgtaa acattggctg tttggttctg
     7321 gcgtcaatga cgttggcatt tacataaggg aatttcgctc ccgccagcgc atttttcagg
     7381 taatccagac cgtagttaaa ttcatgattg ccgagtgtac cgaccgtata atccagcgta
     7441 ttcagcgcct tataaaccgg atgaacatca cctgctttta atcctttcgc cgacatgtaa
     7501 tcggccagcg gactcccctg aatcaaatcg ccgttatcga ccagtacgct gtttttcact
     7561 tcattgcggg catcgttaat caggcttgcc gtacgtacca gtccgaattt ttccgtggcg
     7621 gtgtctttgt aataatcgaa atccatcatg ttgctatgca gatcagtggt ttccatgata
     7681 cgcagatcga ccgtcgctgc attcacactg gcggcaatca gcgtggccag gagcgttgcg
     7741 ctaaacttaa tcatcaggga catcctttta tcatcgggaa tacgaaagaa aagggagaat
     7801 aaacgtctta cttatagaac agtgaagaat gccacaattt tacgctttga aaatgatgac
     7861 actatcacag ttggcgcatt cattaacgat agggtataag taaaacaata agttaacacc
     7921 gctcacagag acgaggtgga gaaatgttag atcaagtatg ccagcttgca cggaatgcag
     7981 gcgatgccat tatgcaggtc tacgacggga cgaaaccgat ggacgtcgtc agcaaagcgg
     8041 acaattctcc ggtaacggca gcggatattg ccgcacacac cgttatcatg gacggtttac
     8101 gtacgctgac accggatatt ccggtccttt ctgaagaaga tcctcccggt tgggaagtcc
     8161 gtcagcactg gcagcgttac tggctggtag acccgctgga tggtactaaa gagtttatta
     8221 aacgcaatgg cgaattcacc gttaacattg cgctcattga ccatggcaaa ccgattttag
     8281 gtgtggtgta tgcgccggta atgaacgtaa tgtacagcgc ggcagaaggc aaggcctgga
     8341 aagaagagtg cggtgtgcgc aagcagattc aggtccgcga tgcgcgcccg ccgctggtgg
     8401 ttatcagccg ttcccatgca gatgcggagc tgaaagagta tctgcaacag cttggcgaac
     8461 atcagaccac gtccatcggc tcttcgctga aattctgcct ggtggcggaa ggacaggcgc
     8521 agctgtaccc gcgcttcgga ccaacgaata tttgggacac cgccgctgga catgctgtgg
     8581 ccgcagctgc cggagcgcac gttcacgact ggcagggtaa accgctggat tacactccgc
     8641 gcgagtcgtt cctgaatcct gggttcagag tgtctattta ctaaattcag atggcagaaa
     8701 cagtgtattt cctgattctg ccatcctgat ttctcccaac ctaaaaagtt ataaataaaa
     8761 agagattgta tttaaagtgc aaaaattcaa ttgctaataa gttacatttt aataatgagc
     8821 gttttttgat agtttacttc tataatgaga tatttaatgg cgacataaaa taaccaaata
     8881 aaataaggta gccatatgtt acccaggatc agacacaata attttattgg tgcggtggag
     8941 ttattcgtaa aatcatcgca tacaaaaaca cattcaaaca atttttttaa taatattcag
     9001 catgcattta agaaaaaaga ttgggtttcg aattatgata gcctgttaac tttgtgggag
     9061 ttttttcgtt gcgcaactca gattgataaa gatagttatc aagtgctttc atcaaaaaat
     9121 gaaactgtta aagccatgga taagtttctt atcagtttca gccttaaaga taacggtgcc
     9181 gaatatacaa tgacattgcg aggcagtgga tttgaatacg aagaaatccc cataacaata
     9241 aatgagtata actcattcat ggatttcaaa aaccgtgaat ttccgttaga acaaaacaga
     9301 agattgtatg cttgggatat tctgcagaaa aaacagtctg acataccgaa aaggattaaa
     9361 ggttatattc accaggcgat tggtgacgtg tctttaggtt atgccttatt ggaggatata
     9421 gtaagcaaat taaaacgggg taaatttgaa ctccaaatac caggaggtgg aattaaagaa
     9481 tgcgatggat ggtatattta cgaaaaaata attgatgata attttgccat agtcatagaa
     9541 tctttgggct ttgcgcttaa aatctatgga ggggatgaac gttttcgtaa tggttcctct
     9601 gttgttttgg aggatgaaga ttactctctt atttataatt ttctggttaa tgcaggttgc
     9661 caacaagtcg aattagccga acaagtggat gcgatagtaa gtgcgaatct ggccgtagat
     9721 agtgatatta ccgaagagga gatttgcgag aaatataaat caaccattga ggcgtttaaa
     9781 aaagagcaac tagcgttacc agtatga
//
LOCUS       DAJVSY010000156         9788 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.158, whole genome shotgun sequence.
ACCESSION   DAJVSY010000156 DAJVSY010000000
VERSION     DAJVSY010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9788)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9788)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9788
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.158"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(188..529)
                     /locus_tag="OQQ19_003438"
     CDS             complement(188..529)
                     /locus_tag="OQQ19_003438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase"
                     /protein_id="HCS1804936.1"
                     /translation="MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGA
                     VPGNGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVEGLKL
                     IESGDWLDRDK"
     gene            complement(532..4311)
                     /gene="tamB"
                     /locus_tag="OQQ19_003439"
     CDS             complement(532..4311)
                     /gene="tamB"
                     /locus_tag="OQQ19_003439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex protein TamB"
                     /protein_id="HCS1804937.1"
                     /translation="MSLWKKISLGVVIVILLLLGSVAFLVGTTSGLHLVFKAADRWVP
                     GLDIGKVTGGWRDLTLSDVRYEQPGVAVKAGNLHLAVGLECLWNSSVCINDLALKDIQ
                     VNIDSKKMPPSEQVEEEEDSGPLDLSTPYPITLTRVALDNVNIKIDDTTVSVMDFTSG
                     LNWQEKTLTLKPTSLKGLLIALPKVAEVAQEEVVEPKIENPQPDEKPLGETLKDLFSR
                     PVLPEMTDLHLPLNLNIEEFKGEQLRVTGDTDITVRTMLLKVSSIDGNTKLDALDIDS
                     NQGIVNASGTAQLSDNWPVDITLNSTLNVEPLKGEKVKLKVGGALREQLEIGVNLSGP
                     VDMDLRAQTRLAEAGLPLNVEVNSKQLYWPFTGEKQYQADDLKLKLTGKMTDYTLSMR
                     TAVKGQEIPPATITLDAKGNEQQVNLDKLTVAALEGKTELKALLDWQQAISWRGELTL
                     NGINTAKEFPEWPSKLNGLIKTRGSLYGGTWQMEVPELKLTGNVKQNKVNVDGTLKGN
                     SYMQWMIPGLHLELGPNSAEVKGELGVKDLNLDATINAPGLDNALPGLGGTAKGLVKV
                     RGTVEAPQLLADITARGLRWQELSVTQVRVEGDIKSTDQIAGKLDVRVEQISQPDVNI
                     NLVTLNAKGSEKQHELQLRIQGEPVSGQLNLAGSFDRKEERWKGTLSNTRFQTLVGPW
                     SLTRDIALDYRNKEQKISIGPHCWLNPNAELCVPQTIDAGAEGRAVVNLNRFDFAMLK
                     PFMPETTQASGIFTGKADVAWDTTKEGLPQGSITLSGRNVQVTQTVNDAALPVAFQTL
                     NLTAELRNNRAELGWTIRLTNNGQFDGQVLVTDPQGRRNLGGNVNIRNFNLAMINPIF
                     TRGEKAAGMVSANLRLGGDVQSPQLFGQLQVTGVDIDGNFMPFDMQPSQLAVNFNGMR
                     STLAGTVRTQQGEIYLNGDADWSQIENWRARVTAKGSKVRITVPPMVRMDVSPDVVFE
                     ATPNLFTLDGRVDVPWARIVVHDLPESAVGVSSDVVMLNDNLQPEEPKTASIPINSNL
                     IVHVGNNVRIDAFGLKARLTGDLNVVQDKQGLGLNGQINIPEGRFHAYGQDLIVRKGE
                     LLFSGPPDQPYLNIEAIRNPDATEDDVIAGVRVTGLADEPKAEIFSDPAMSQQAALSY
                     LLRGQGLESDQSDSAAMTSMLIGLGVAQSGQIVGKIGETFGVSNLALDTQGVGDSSQV
                     VVSGYVLPGLQVKYGVGIFDSIATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF"
     gene            complement(4308..6041)
                     /gene="tamA"
                     /locus_tag="OQQ19_003440"
     CDS             complement(4308..6041)
                     /gene="tamA"
                     /locus_tag="OQQ19_003440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex protein TamA"
                     /protein_id="HCS1804938.1"
                     /translation="MRYIRQLCCVSLLCLSGSAVAANVRLQVEGLSGQLEKNVRAQLS
                     TIESDEVTPDRRFRARVDDAIREGLKALGYYQPTIEFDLRPPPKKGRQVLIAKVTPGV
                     PVLIGGTDVVLRGGARTDKDYLKLLDTRPAIGTVLNQGDYENFKKSLTSIALRKGYFD
                     SEFTKAQLGIALGLHKAFWDIDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGDEY
                     ESKDLAELNRRLSATGWFNSVVVAPQFDKARETKVLPLTGVVSPRTENTIETGVGYST
                     DVGPRVKATWKKPWMNSYGHSLTTSTSISAPEQTLDFSYKMPLLKNPLEQYYLVQGGF
                     KRTDLNDTESDSTTLVASRYWDLSSGWQRAINLRWSLDHFTQGEITNTTMLFYPGVMI
                     SRTRSCGGLMPTWGDSQRYSIDYSNTAWGSDVDFSVFQAQNVWIRTLYDRHRFVTRGT
                     LGWIETGDFDKVPPDLRFFAGGDRSIRGYKYKSIAPKYANGDLKGASKLITGSLEYQY
                     NVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGVGVRWESPVGPIKLDFAVPVADKDEHG
                     LQFYIGLGPEL"
     gene            6247..6885
                     /gene="msrA"
                     /locus_tag="OQQ19_003441"
     CDS             6247..6885
                     /gene="msrA"
                     /locus_tag="OQQ19_003441"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HCS1804939.1"
                     /translation="MSLFDKKHLVSPADALPGRNTPMPVATLHAVNGHSMTNEPDGME
                     IAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYD
                     PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAA
                     MLAADDDRHITTEIANATPFYYAEDDHQQYLHKNPYGYCGIGGIGVCLPPEA"
     gene            7208..8551
                     /locus_tag="OQQ19_003442"
     CDS             7208..8551
                     /locus_tag="OQQ19_003442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HCS1804940.1"
                     /translation="MLNSILVILCLIAVSAFFSMSEISLAASRKIKLKLLADEGNINA
                     QRVLNMQENPGMFFTVVQIGLNAVAILGGIVGDAAFSPAFHSLFSRYMSAELSEQLSF
                     ILSFSLVTGMFILFADLTPKRIGMIAPEAVALRIINPMRFCLYVCTPLVWFFNGLANM
                     IFRIFKLPMVRKDDITSDDIYAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTP
                     RENVIWFDLHEDEQSLKNKVAEHPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLA
                     LNSGVQIRNTLIVPDTLTLSEALESFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMG
                     DLVGQGLEEQIVARDENSWLIDGGTPIDDVMRVLDIDEFPQSGNYETIGGFMMFMLRK
                     IPKRTDSVKFAGYKFEVVDIDNYRIDQLLVTRIDSKATALSPKLPDAKDKEESVA"
     gene            complement(8613..8819)
                     /locus_tag="OQQ19_003443"
     CDS             complement(8613..8819)
                     /locus_tag="OQQ19_003443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1107 domain-containing protein"
                     /protein_id="HCS1804941.1"
                     /translation="MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKV
                     KDKLHLSVMSEVNRQVMRLQTEMA"
     gene            9144..9698
                     /locus_tag="OQQ19_003444"
     CDS             9144..9698
                     /locus_tag="OQQ19_003444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtfJ family protein"
                     /protein_id="HCS1804942.1"
                     /translation="MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDK
                     DQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNT
                     DDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVARGAWQLDEESSAVVVLDKDGRVQ
                     WAKDGALTQEEVQQVMDLLQKLLK"
BASE COUNT         2260 a         2683 c         2408 g         2437 t
ORIGIN      
        1 tactcaccgt tcaaagcgtg cccccgtttt acccctgcac atttgtgaac gccagcagag
       61 ttttttatgc gattgcagat atggaaagcg gctcggagag aaaagcaaaa gatggaaaag
      121 ttacaaaaaa aaatcgcgag atacatcgca taaaacaacg ccacccgaag gtggcgtgct
      181 tttattatta cttatccctg tctaaccagt cgccgctttc aattagcttt aatccctcga
      241 cgggtcgttg ataaacgtac atccatgcac tcccgtacgg cgtctgaatc aactggcgcg
      301 cgtattcacc gcccctggtg cgcaaggcat caagttcggc cagcgtggcg ttgtcaatac
      361 gataaacttc accgtgtacc gttccgttcc ccggaactgc gcctggatag tggcccaggc
      421 tatacaactg gtagttatcg atactgaaat cgcccagtaa ctgggcattg gtcatccagt
      481 gactgttgcc ttgtttgtgg cgtaaactgc cgtagacaaa tattcgcatt gctaaaactc
      541 gaactgatag agcaaatcca gtgcctggtc tacaccagac acggcttcca gatatagctt
      601 aggcatcagg cgataacgta acgtgagtgt tgctatagag tcaaatatac ccacgccgta
      661 tttcacttgc aggcctggca atacatagcc gctgaccact acctgggagg agtcgcctac
      721 tccctgggtg tcgagcgcta aattgcttac gccaaacgtc tcgccgattt tacccacaat
      781 ctggccactt tgcgcaaccc ccagaccaat cagcatcgag gtcattgccg cactgtcgct
      841 ctgatcgctc tccagccctt gtccacgtag caaataagac aatgcagctt gttgcgacat
      901 cgccgggtca gagaagatct ccgctttcgg ttcgtccgcc agaccagtga cgcgaactcc
      961 ggcgattacg tcgtcttctg tagcatccgg gttacgaata gcttcaatat taagatacgg
     1021 ttgatctggc ggaccagaga acagtagctc acccttacgc acaatcagat cctgaccata
     1081 ggcatggaag cgcccttcag ggatgttgat ctgcccgttc aggcccagcc cttgtttgtc
     1141 ctgaacgacg ttaagatcgc ccgtcagccg cgctttcagg ccaaaggcgt caatgcgcac
     1201 attgttgcca acgtggacaa tcaggttact gttaatcgga atcgacgccg ttttcggctc
     1261 ttccggttgc aggttatcgt taagcatcac cacatcgctg gagacgccta ctgcgctttc
     1321 cggcagatcg tgcaccacga tgcgcgccca cgggacatcc acgcgaccat cgagggtaaa
     1381 caggtttggt gtagcctcga atacaacatc tggcgataca tccattcgta ccatcggcgg
     1441 cacggtgatc cgcactttac tgcctttcgc cgttactcgt gcccgccagt tttcaatttg
     1501 gctccagtcg gcatcaccgt tcaggtagat ttcaccctgc tgggtccgta ctgtaccggc
     1561 aagcgtcgag cgcataccgt taaagttgac cgcaagctgg ctcggctgca tatcaaacgg
     1621 cataaagttg ccgtcgatat ccacacccgt aacctgaagc tgaccaaaca actgcgggct
     1681 ttgcacatca ccacccagac gcaagttggc actcaccatc cccgctgctt tttccccacg
     1741 agtaaagatg gggtttatca tcgcaaggtt gaagttacgg atattgacgt tgccaccaag
     1801 attacggcgg ccttgcggat cggtcaccag cacctgtcca tcaaactggc cgttattggt
     1861 caggcggatg gtccagccca attcggcacg gttgttacgc aattccgccg tcagattcag
     1921 tgtctgaaac gccaccggca gcgccgcatc gttgacggtt tgcgttacct gcacgttacg
     1981 ccccgaaagg gtgatactgc cctgcggcag cccctctttc gtggtgtccc aggcaacatc
     2041 cgctttaccc gtgaagatac cgctggcctg agtggtttct ggcataaacg gtttcagcat
     2101 ggcgaagtcg aagcggttga gattcaccac cgcacgccct tcggcccccg catcgatagt
     2161 ttgcggcacg cacagttccg cattcgggtt aagccagcag tgtggcccga tgctgatttt
     2221 ttgctcctta ttgcggtaat ccagcgcaat atcgcgggtc agcgaccacg ggccgaccag
     2281 cgtctggaag cgggtattgc taagagttcc cttccagcgt tcttctttgc gatcaaaact
     2341 tcctgccaga ttaagctgcc cggagacagg ctcgccctga atccgcaact gtagctcgtg
     2401 ctgcttttcg ctgcctttgg cattcagggt gacgaggttg atatttacat ccggctgcga
     2461 aatttgctca acgcgtacgt cgagtttccc ggcgatctga tcggtggatt taatgtcgcc
     2521 ttccacgcga acctgcgtca cggaaagttc ctgccagcgc aggccgcgcg cggtgatatc
     2581 tgccagtagt tgtggcgctt ccaccgtgcc gcgtactttc accagccctt tcgctgtacc
     2641 gccaagcccc ggcagcgcgt tatccagccc cggcgcgttg atggtggcat caagattgag
     2701 atcttttacc cccagctcgc ctttcacttc ggcactgttt ggccccagtt ccagatgaag
     2761 cccagggatc atccactgca tataactgtt gcctttcagc gtgccgtcaa cgttcacttt
     2821 gttctgtttg acgttaccgg tcagcttcag ttctggcacc tccatctgcc aggtgccgcc
     2881 gtacaggcta ccgcgggttt taatcaagcc attgagtttc gacggccact ccgggaactc
     2941 tttggcggtg ttaatgccat taagcgttag ctcaccgcgc caactaatgg cctgctgcca
     3001 gtcgagcaac gccttgagtt cagttttccc ttccagcgcc gcgacggtga gtttgtcgag
     3061 attgacctgc tgttcattac ctttggcatc aagggtaatg gtggctggcg ggatctcctg
     3121 tcccttcact gccgtacgca tagagagcgt gtaatcggtc attttgccgg taagtttcag
     3181 tttcagatca tccgcctgat actgcttctc accagtgaac ggccagtaaa gctgtttgct
     3241 gttcacttcc acgttgagcg gcaatccggc ttccgccagt cgcgtctggg cgcgtaaatc
     3301 catatccacc ggaccggaaa gattaacgcc aatctccagc tgttcgcgca gcgcgccgcc
     3361 cacttttagc ttcacttttt cacctttcaa cggctccacg ttcagtgtgc tgttgagggt
     3421 gatatccacc ggccagttgt ctgacagctg cgccgtgccg ctggcgttga cgatcccctg
     3481 gttggaatcg atatccaggg cgtccagttt agtattgccg tcaatgctgc tcactttcag
     3541 cagcatggtg cgcacggtga tgtccgtgtc gcccgtcacg cgtaactgct cgcctttaaa
     3601 ctcttcaatg ttcaggttaa gcggcaaatg caagtcggtc atttccggca ataccgggcg
     3661 agaaaagaga tctttcagcg tttcgccgag cggcttttca tccggctgcg gattttcaat
     3721 tttcggttcg accacttctt cctgcgccac ttccgccact ttcggcagag caatcagcag
     3781 gcctttcagc gacgtcggtt tcagggtcag ggttttctcc tgccagttca ggccggaggt
     3841 gaagtccatc accgacaccg tggtgtcatc aatcttgatg ttgacgttgt ccagcgccac
     3901 ccgtgtcagg gtgatgggat acggcgtgga gagatccagc ggaccgctat cttcctcttc
     3961 ttcaacctgt tcagaaggag gcattttttt actgtcgatg ttgacctgaa tgtctttcag
     4021 cgccaggtca ttaatacaaa cgctactgtt ccacaggcac tcaagaccga ccgccagatg
     4081 cagattaccc gcttttaccg ccacgcctgg ctgctcataa cgaacgtcag acaaggtgag
     4141 atcgcgccag ccgccggtga ccttgccaat atccagtcct ggcacccagc gatccgccgc
     4201 tttaaataca agatgcaggc cgctggtggt gcccaccaga aacgccaccg atcccagcaa
     4261 cagtaagata acgataacca cgccgaggct gatttttttc cataaactca taattctggc
     4321 cccagaccga tgtaaaactg taacccgtgt tcgtctttat ccgcgaccgg tacggcaaaa
     4381 tcgagtttga ttggcccgac cggcgattcc cagcgcacgc cgaccccggt accggtttta
     4441 aagtcgctgc ggcgaatatc gcttaccgct tcgccactat cgacaaacac cgcgccccac
     4501 cattttccgg tcacgttgta ctggtattcc agcgatccgg ttatcaactt cgaggcccct
     4561 ttcaggtcac cgttggcgta tttcggggcg atagatttgt atttgtagcc gcgaatactg
     4621 cgatcgcccc cggcgaaaaa acgcagatcc ggcggtactt tgtcgaaatc accggtttca
     4681 atccagccca gcgtgccgcg tgtaacgaaa cgatggcgat cgtacagtgt gcggatccag
     4741 acgttctgcg cctggaaaac ggagaaatcg acatctgagc cccaggccgt gttggagtag
     4801 tcgatagagt agcgttgcga gtcgccccag gttggcatca ggccaccaca agaacgcgtg
     4861 cggctaatca tcaccccagg ataaaacagc atcgtggtgt tggtaatttc accctgagta
     4921 aagtggtcga gactccagcg caggttaatg gcacgctgcc aaccgctgga gagatcccag
     4981 tagcgagaag ccaccagcgt agtggagtca gattcggtat cgttcaggtc agtgcgctta
     5041 aaaccgccct gcaccaaata atattgttcc agtggattct tcagcagcgg cattttatag
     5101 ctgaagtcga gggtctgttc cggcgcggaa atactggtac tggtggtcaa actgtgaccg
     5161 tatgagttca tccacggctt tttccacgtc gctttcacgc gcggtcccac gtccgtagag
     5221 taaccgaccc cggtttcgat ggtgttttct gttcgcggcg aaaccacgcc cgtcaatggt
     5281 aatactttcg tttcgcgcgc tttatcaaat tgtggagcca ccaccaccga gttaaaccag
     5341 ccggtagcag aaagtcggcg gttcagttcc gccagatctt tcgattcata ctcatcgccc
     5401 tctttaaacg gcaccagatt ttgcaggtat tcatcgcgga tttgtgatcc ttcaaaggtc
     5461 acatgcccaa agcggtaacg ttcgccactg ttataatcaa tatcccagaa ggctttatgc
     5521 aggccgagcg caatgcccag ctgcgctttg gtaaattcgc tatcgaaata acctttacgc
     5581 aacgcaatac tggttaagga ctttttgaaa ttttcataat cgccctggtt cagtaccgta
     5641 ccaatagccg ggcgagtatc gagcaatttc aaatagtctt tatcggtccg cgcgccgccg
     5701 cgcaatacca catcggtgcc gccaattaac accggcacac ctggcgtgac tttggcgatc
     5761 aatacctgcc gccctttctt tggcggtgga cggagatcaa attcaatggt cggctggtaa
     5821 taacccagcg ctttcagacc ttcacggatg gcatcatcga cgcgtgcgcg aaagcggcgg
     5881 tctggcgtca cttcatcact ttcaatcgta gaaagctgcg cacgaacgtt cttttccagc
     5941 tgtcccgata acccctcgac ctgtagacgg acgttcgcgg cgacggcaga tccgcttaag
     6001 cagagtaagc ttacacagca taactgtcgg atatagcgca cattttctcc tgaatatcct
     6061 tttttcctgc ccctggaacg ccgttaaacg gcttaacaaa aatccagtaa tatggattaa
     6121 aaagcagact aaaccccaaa tatttcttat gttttacttt agacctattc acggtggtta
     6181 ttgtgtgcaa atacgcctct tgttacaacc ttaaccccaa tgaccgattt tcgggagagc
     6241 gacaccatga gtttatttga taaaaagcat ctggtttccc ccgccgatgc cctgcctgga
     6301 cgtaacaccc cgatgcccgt agccacgctg catgcggtca acggtcactc aatgaccaat
     6361 gaacctgacg gaatggagat tgccattttt gcgatgggtt gtttctgggg tgtggagcgt
     6421 ctgttctggc agttacccgg cgtttacagc accgccgcag gctataccgg cggctatacg
     6481 ccaaatccga cttatcggga agtgtgctcc ggtgatacgg gtcatgccga agcggtacgc
     6541 attgtttacg atccttccgt catcagctat gagcagttgc tacaggtatt ttgggagaat
     6601 cacgatcccg cccagggaat gcgtcagggc aatgaccacg gcacgcagta tcgttcagcg
     6661 atttatccgc tgaccccaga acaggatgcc gcagctcgcg ccagtctgga acgttttcag
     6721 gcggcgatgc ttgccgccga tgacgatcgt cacatcacca cggaaatcgc taacgccaca
     6781 ccgttttatt atgccgaaga tgaccaccag caatatctgc ataaaaaccc atatggttac
     6841 tgtggaattg gcggaattgg cgtctgtctg ccgccggaag catagcgtta cgggtacaaa
     6901 tgtagtttgt tgataaagtg ctctttgtct atgcctgatg cggcttaaac gacttaccag
     6961 gcctacaaaa tcgtccaaat tcaatatatt gcaaggactg cgtaggcctg atcggcatag
     7021 cgcatcaggc agtattgcat ttatcagcag tctgaatttt aaccctctgg cgactttaca
     7081 gtaccttacg ctatactagc cactgaaaat tccggttcac tttcttcgaa tcggctttca
     7141 atgtgtattt cacacaaatt aatcaacttt cccttccgag gatctggcct gaaaggtcgg
     7201 ataagatatg ttaaacagta ttttagtcat actctgcttg atcgctgtaa gtgcgttctt
     7261 ctcgatgtcc gagatctcgc ttgccgcctc acgcaaaatc aaacttaaac tgctggctga
     7321 tgaaggcaat ataaatgccc aacgcgttct gaatatgcag gaaaatcccg gcatgttctt
     7381 taccgtggtc caaatcggtc tgaacgcagt ggcgattctc ggcggtatcg tcggtgatgc
     7441 ggcattttct ccagcttttc acagcctgtt ctcccgctat atgtcggcag agctctctga
     7501 gcaactgagc tttattctct ctttctcgtt agtgactggc atgtttatcc tgtttgcgga
     7561 tttaaccccg aaacgcatcg gtatgattgc gccagaagcg gtggctttgc gtatcatcaa
     7621 cccgatgcgc ttctgcctgt acgtttgcac cccgctggtg tggttcttca acggcctggc
     7681 gaacatgatc ttccgtattt tcaaactgcc aatggtacgt aaagatgaca tcacttctga
     7741 tgacatctac gcggtagtgg aagccggtgc gctggcgggc gtgttacgta aacaggaaca
     7801 cgagctgatt gaaaacgtct ttgagctgga atcccgtacc gttccgtctt caatgacacc
     7861 gcgtgaaaac gtgatttggt ttgatctcca cgaagatgag caaagcctga agaataaggt
     7921 ggcggaacat ccgcactcta agttcctcgt ctgtaatgaa gatattgacc acatcatcgg
     7981 ttatgtcgat tctaaagacc tgctgaaccg cgtgctggct aaccaaagcc tggcactgaa
     8041 cagcggcgta caaattcgca acacgctgat tgtgccggat acgttaaccc tttcagaggc
     8101 gttggaaagt tttaaaaccg caggtgaaga cttcgcggtg atcatgaacg agtacgcgct
     8161 ggtggtgggg atcatcaccc tcaacgacgt gatgaccacg ctgatgggcg atctggtcgg
     8221 tcaggggctg gaagagcaga ttgtcgcccg tgatgagaac tcatggctga ttgacggcgg
     8281 caccccaatt gacgacgtca tgcgcgtgct ggatattgac gagttcccgc agtcgggcaa
     8341 ctacgaaacc atcggcggct ttatgatgtt tatgctgcgt aagatcccga aacgcaccga
     8401 ttcggtgaaa ttcgccggct acaaatttga agtggtggat atcgataact accgcatcga
     8461 ccagctgctg gtgacccgga tcgacagcaa ggccaccgcc ctttcgccaa aactgcctga
     8521 cgctaaagat aaagaagaaa gcgtcgcgta acccccagaa acatcaacgg ctcctgaatc
     8581 aggagccgtc ttattactgc atagcacttt ggttaagcca tctctgtttg cagacgcata
     8641 acctgacggt taacttcgga catcactgac aaatgcagct tatccttcac ttttgggata
     8701 agaatcttac ccttatcaaa ttcaaaagcg ccaacgtcct tgatgtataa ccgtccacgg
     8761 aacaggatct ttacgtactt cgccacctga agtgggttgt accgttggaa aattttcatt
     8821 gttatctcct gctgagtatt acgcctgtgc ggtgccacaa tcggcccaac tattatgaga
     8881 cgcaaatttt aatgcttagt gactatagac tatccgggca atgtttccac cgcgtataac
     8941 tttttttacc taaaggttac aattattcag aattatcttt ttaccgaagc gcggtcttca
     9001 gtataagcat tcatttttca tatgatttgt gcgcttgacc gcaaactggc atcacacttg
     9061 cgggaaattc gataaatagc acatatgatt aaaactcaga tccaagtggt cggatcacct
     9121 gcatatcata agaaggaaac accatgaccc tacgcaagat tctggcactc acctgcctgc
     9181 tgttgccgat gatggcttcc gcacatcagt tcgaaaccgg tcagcgagtg ccgccgattg
     9241 gcattaccga tcggggcgag ttggtgcttg ataaagatca gtttagctac aaaacctgga
     9301 acagcgcgca gttagtggga aaagtgcgag tactgcaaca tattgctggt cgcacctctg
     9361 caaaagagaa aaacgcgacg ctgattgaag cgattaaatc agcaaagtta ccgcacgatc
     9421 gttaccagac caccaccatt gttaacaccg acgacgcaat tccgggttcc ggcatgtttg
     9481 tgcgcagcag tctggagagt aataaaaagc tttatccctg gtcgcagttt attgtcgata
     9541 gcaatggcgt cgcgcgcggt gcctggcagc tggatgaaga aagttccgct gtagtggtgc
     9601 tggataagga tggtcgcgtg caatgggcca aagacggggc gctcacacag gaagaggtgc
     9661 agcaagtgat ggacctgctg caaaagttgc tcaaataatg gcaataacat aaattctgca
     9721 aaaataattt tcccctatcg ttatctatgg gataggggaa ttaggtctct gagctcttac
     9781 accgaact
//
LOCUS       DAJVSY010000157         9741 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.159, whole genome shotgun sequence.
ACCESSION   DAJVSY010000157 DAJVSY010000000
VERSION     DAJVSY010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9741)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9741)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9741
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.159"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..472
                     /locus_tag="OQQ19_003445"
     CDS             <1..472
                     /locus_tag="OQQ19_003445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001589353.1"
                     /note="type IV secretion system coupling protein; similar
                     to F plasmid TraD; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="HCS1804943.1"
                     /translation="YQERPKVAPEFIPRDINPEMENRLSAVLAAREAEGRQMASLFEP
                     DVPEVVSGEDVTQAEQPQQPVSPVINDKKSDSGVNVPAGGIEQELKMKPEEEMEQQLP
                     PGISESGEVVDMAAYEAWQQENHPDTWQQMQRREEVNINVHRERGEDVEPGDDF"
     gene            complement(481..879)
                     /gene="vapC"
                     /locus_tag="OQQ19_003446"
     CDS             complement(481..879)
                     /gene="vapC"
                     /locus_tag="OQQ19_003446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(fMet)-specific endonuclease VapC"
                     /protein_id="HCS1804944.1"
                     /translation="MLKFMLDTNICIFTIKNKPASVRERFNLNQGRMCISSVTLMELI
                     YGAEKSQMPERNLAVIEGFVSRIDVLDYDAAAATHTGQIRAELARQGRPVGPFDQMIA
                     GHARSRGLIIVTNNTREFERVGGLRTEDWS"
     gene            complement(879..1106)
                     /gene="vapB"
                     /locus_tag="OQQ19_003447"
     CDS             complement(879..1106)
                     /gene="vapB"
                     /locus_tag="OQQ19_003447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system antitoxin VapB"
                     /protein_id="HCS1804945.1"
                     /translation="METTVFLSNRSQAVRLPKAVALPENVKRVEVIAVGRTRIITPAG
                     ETWDEWFDGHSVSADFMDNREQPGMQERESF"
     gene            1188..6465
                     /gene="traI"
                     /locus_tag="OQQ19_003448"
                     /pseudo
     CDS             1188..6465
                     /gene="traI"
                     /locus_tag="OQQ19_003448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_490592.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative transfer relaxase/helicase TraI"
     gene            6485..7231
                     /gene="traX"
                     /locus_tag="OQQ19_003449"
     CDS             6485..7231
                     /gene="traX"
                     /locus_tag="OQQ19_003449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858383.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer pilus acetylase TraX"
                     /protein_id="HCS1804946.1"
                     /translation="MTTDNTNTTRNDSLAARTDTWLQSFLVWSPGQRDIIKTVALVLM
                     VLDHINLIFQLKQEWMFLAGRGAFPLFALVWGLNLSRHAHIRQPAINRLWGWGIIAQF
                     AYYLAGFPWYEGNILFAFAVAAQVLTWCETRSGWRTAAAILLMALWGPLSGTSYGIAG
                     LLMLAVSNRLYRAEDRAERLALVACLLAVIPALNLATSDAAAVAGLVMTVLTVGLVLC
                     AGKSLPRFWPGDFFPTFYACHLAVLGVLAL"
     gene            7286..7846
                     /locus_tag="OQQ19_003450"
     CDS             7286..7846
                     /locus_tag="OQQ19_003450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fertility inhibition protein FinO"
                     /protein_id="HCS1804947.1"
                     /translation="MTEQKRPVLTLKRKTEGTATVRSRKTIINVTTPPKWKVKKQKLA
                     EKAAREAELAAKKAQARQALSIYLNLPTLDEAVNTLKPWWPGLFDGDTPRLLACGIRD
                     VLLEDVAQRNIPLSHKKLRRALKAITRSESYLCAMKAGACRYDTEGYVTEHISQEEEA
                     YAGARLAKIRRQNRIKAELQAVLDEK"
     gene            7977..8189
                     /locus_tag="OQQ19_003451"
     CDS             7977..8189
                     /locus_tag="OQQ19_003451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_958725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HCS1804948.1"
                     /translation="MNGFRNSSRNGQVWRYQRAGGRAVILEVSGRWMEAAEAWRRAAC
                     VAPRTDWQQFARKRAEHCHRRCRGRG"
     gene            8433..8894
                     /locus_tag="OQQ19_003452"
     CDS             8433..8894
                     /locus_tag="OQQ19_003452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HCS1804949.1"
                     /translation="MRKYIPLVLFIFSWPVLSADIHGRVVRVLDGDTIEVMDSLKAVR
                     IRLVNIDAPEKKQDYGRWSTDMMKSLVAGKTVTVTYFQRDRYGRILGQVYAPDGMNIN
                     QFMVRAGAAWVYEQYNTDPVLPVLQNEARQQKRGLWSDADPVPPWIWRHRK"
     gene            8940..9149
                     /gene="hha"
                     /locus_tag="OQQ19_003453"
     CDS             8940..9149
                     /gene="hha"
                     /locus_tag="OQQ19_003453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_958726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin expression modulator Hha"
                     /protein_id="HCS1804950.1"
                     /translation="MAKTKQEWLYQLRRCSSVNTLEKIIHKNRDSLSNSERESFNSAA
                     DHRLAELIIGKLYDRIPKEIWKYVR"
     gene            9188..>9741
                     /locus_tag="OQQ19_003454"
     CDS             9188..>9741
                     /locus_tag="OQQ19_003454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2726 domain-containing protein"
                     /protein_id="HCS1804951.1"
                     /translation="MKLIIFILIVLIIAALLIRIILRSVNQHSPLLMQLHAAGIRTGD
                     AERILSSGEYWQRQTTLLTEREVSFMKGLFRIVDMTRWYLCPQVRVADIVQLNGNIRP
                     RSRQWWQLFRMVSQWHVDVVIVELRSFSIVAAVELDDASHLRPERRRRDILLEEVLRQ
                     AGIPLLRSHDARKLLQMTGEWLNTT"
BASE COUNT         2304 a         2394 c         3057 g         1986 t
ORIGIN      
        1 atatcaggaa cgaccgaagg tcgctccgga gtttattccg cgtgacatca acccggaaat
       61 ggagaaccgt ctgagtgccg tacttgccgc aagggaagca gaaggtcgtc agatggccag
      121 cctcttcgaa ccggatgtcc cggaggttgt ttccggagaa gacgtgactc aggctgaaca
      181 gccgcaacag ccggtgtctc ctgtcatcaa cgataagaag tcagattcag gtgtgaatgt
      241 tccggcaggg gggatcgagc aggagctgaa aatgaaaccg gaagaagaga tggaacagca
      301 actgccaccc gggatcagtg aatccggtga agtggtggat atggccgctt atgaggcatg
      361 gcagcaggaa aatcatccgg acacctggca gcagatgcag cgtcgtgaag aggtgaacat
      421 caatgtgcac cgggaacgcg gggaggatgt tgagccggga gatgatttct gatgaacagg
      481 tcagctccag tcttcagttc tcaggccgcc cacacgttca aattcccggg tgttattagt
      541 cacaataatc agcccccgac tgcgggcatg acctgcgatc atttgatcaa atggcccgac
      601 agggcgtccc tgacgggcaa gttctgctct tatctggccg gtgtgtgtgg ctgcagcagc
      661 gtcgtaatcc agaacatcaa tgcgggaaac aaatccctcg atcacagcga gattacgttc
      721 aggcatctgg cttttttctg caccatatat cagctccatc agggtgaccg aactgataca
      781 cattctcccc tggttcaggt taaaacgctc cctgacgctg gcgggtttgt tctttatcgt
      841 aaaaatgcag atgttggtat cgagcataaa cttcagcatc agaatgactc cctttcctgc
      901 atgccgggct gttccctgtt atccataaaa tcggcgctga cgctgtgtcc gtcgaaccat
      961 tcgtcccatg tctctccggc tggcgtaatg attctggttc gtccgacagc aatcacttca
     1021 acgcgtttta cgttttccgg caatgcaacc gcttttggca gtctgaccgc ctggctgcgg
     1081 ttgctgagaa atacggtggt ttccattatt tgcctcctta tgtggatatg tcttgtgtat
     1141 atccattgtg ggattgatgc cgggatatgt caaagggata tacgtttatg atgagtatcg
     1201 cgcaggtcag atcggccgga agtgccggta attattatac caacaaggat aattactatg
     1261 tgctgggcag catgggagaa cgctgggccg gccagggggc tgaacaactg gggctgcagg
     1321 gcagtgtcga taaggatgtc tttacccgcc ttctggaggg caggctgccg gacggggcgg
     1381 atttaagccg catgcaggat ggcagtaaca ggcatcgtcc cggctacgac ctgaccttct
     1441 ccgctcccaa aagtgtctcc atgatggcca tgctcggggg ggacaaacgt cttattgaag
     1501 cacataacca ggccgtggat tttgctgtcc gtcatcatcc gtgtggaggc actggcctcc
     1561 acacggatga tgacggacgg acagtcagaa acggtgctga ccggtaatct ggtgatggca
     1621 ctgtttaacc acgacaccag tcgcgatcag gaaccacagt tacacacgca tgcggtggtg
     1681 actaatgtta cgcagcataa cggcgaatgg aagacactga gcagtgacaa agtggggaaa
     1741 acggggttca ttgagaatgt gtacgctaat cagattgcct ttggcaggct ctaccgggaa
     1801 aaactgaaag agcaggttga ggcgctgggc tatgaaactg aagtggtcgg taagcacggt
     1861 atgtgggaaa tgccgggtgt accggtggag gccttttccg gacgctcaca gactatccgg
     1921 gaggccgtcg gggaagacgc ctcgctgaaa tcccgggatg tggcggcgct ggatacgcgt
     1981 aaatccaaac agcacgtcga tcctgaagtc agaatggccg agtggatgca gacgctgaag
     2041 gaaaccgggt tcgacatccg ggcatatcgt gacgcagcgg aacaacgggc atatacccgc
     2101 acgcagacac ccggacccgc ttcacaggac gggccggatg tgcagcaggc ggtgacacag
     2161 gccattgccg gattaagtga acgcaaagtg cagtttatgt atacggacct gctggccagg
     2221 acggtcggca tactgccgcc ggaaaatggt gtgattgaac gggcacgcgc cggtatcgat
     2281 gaggccatca gccgtgagca gcttatcccc ctcgatcgtg agaaggggct gttcacgtcc
     2341 gggattcata tgctcgatga gctgtcagtc cgggcactca gtcgtgacat catgaaacag
     2401 aaccgggtga ccgtacatcc ggagaaaagt gtcccccgga cggccggtta cagctatgcc
     2461 gtcagtgttc tggcacagga ccgtccgtcg ctggccattg tgtccgggca gggcggtgca
     2521 gccgggcagc gtgagcgggt ggctgaactg gtcatgatgg cccgggagca ggggcgggag
     2581 gtgcagatta tcgctgctga ccgtcgctcg cagatgaacc tgaagcagga tgaacggctg
     2641 tccggtgaac tgataaccgg acgtcgtcag ttgctggaag gcatggcctt cacgccgggc
     2701 agtaccgtta tcgtcgacca gggcgaaaaa ctctccctga aagagacgtt aaccctgctg
     2761 gatggtgccg cacgtcataa cgtacaggtc ctgataactg acagcgggca gcgaaccggt
     2821 acaggcagtg cactgatggc catgaaggat gccggggtga acacatatcg ctggcagggg
     2881 ggagaacagc gaccggccac catcatcagt gaaccggacc gttatgtccg ctatgcccgg
     2941 ctggccggag attttgcggc cagcgtgaaa gccggagaag agagcgtggc acaggtcagc
     3001 ggagtacggg aacaggccat actgacacag gccattcgca gtgagctgaa aacacagggc
     3061 gtgctcggac acccggaggt aaccatgacc gccctgtcac cggtctggct ggacagccgg
     3121 agccgttatc tgcgggatat gtaccgcccg ggaatggtga tggagcagtg gaacccggag
     3181 acacgcagtc atgaccgcta tgtgacagaa cgtgtgacgg cgcagagtca cagcctgacc
     3241 ctgcggaatg cgcagggcga aacgcaggtg gtgcgtattt cttccctgga cagcagctgg
     3301 tcgctgttcc ggccggaaaa aatgccggtg gcagacggtg agcgtctgag ggtgacaggg
     3361 aaaattcccg gactccgcgt ctccggcggt gaccgcctgc aggtggcatc cgtcagtgaa
     3421 gatgcgatga cggttgttgt gccgggacgg gctgaaccgg ccaccctgcc tgtgagcgat
     3481 tcaccgttca cggcactgaa gctggagaac ggctgggtgg aaacgcccgg gcattccgtc
     3541 agcgacagtg cgacggtttt tgcctccgtc acacagatgg caatggacaa tgccaccctg
     3601 aacggtctgg cccgcagtgg tcgtgatgtc cggctgtatt cctcactgga tgaaacccgt
     3661 actgcggaaa aacttgcccg ccatccttcc tttacggtgg tttctgagca gataaaggcg
     3721 cgtgccggtg agacattgct ggaaaccgct atcagtctgc agaaagccgg gcttcacacg
     3781 ccggcacagc aggccattca tctggccctt cctgtgctgg aaagtaaaaa cctggccttc
     3841 agcatggtgg acctgctgac agaggcgaag tcgtttgctg cagaaggaac cggttttgct
     3901 gacctgggag gggaaatcaa tgcgcagata aaacggggtg gtttactgta tgtggatgtg
     3961 gcaaaaggct atggcacagg cctgctggtt tcccgtgcgt cgtatgaggc agaaaagagc
     4021 attcttcgcc atattctcga aggtaaggag gcggtcacgc cgctgatgga gagagtacct
     4081 ggcgaactca tggagaaact gacatcagga cagcgcgccg ccgcccgtat gatactggaa
     4141 acgtccgacc gtttcacggt ggtgcagggc tatgccggtg tgggtaagac cacacagttc
     4201 cgggcggtga tgtcagccgt gaacatgctg ccggagagtg aacgtccccg tgtcgtgggg
     4261 ctggggccca cacaccgtgc ggtcggggag atgcgcagcg ccggcgtgga tgcacagaca
     4321 ctggcgtcct ttctgcatga cacgcagctg cagcagcgca gcggagaaac gccggatttc
     4381 agcaacacgc tgttccttct cgatgagagc tctatggtgg gcaataccga catggcacgg
     4441 gcatacgccc tgattgcggc cggtggcggt cgggctgtgg ccagcggtga cacggaccag
     4501 ctgcaggcca tcgcgcccgg tcagcctttc cgtctccagc agacgcgcag tgctgccgat
     4561 gtggtcatca tgaaggagat tgtgcgtcag acgccggaac tgcgggaggc ggtatacagc
     4621 ctgattaacc gggatgtgga aagggcgctg tccgggcttg agcgtgtgaa accgtctcag
     4681 gtgccacgtc tggagggcgc atgggcaccg gagcactccg tgacggagtt cagtcacagc
     4741 caggaagcga aactggcaga agcgcagcag aaggcgatgc tgaaaggcga ggcttttccg
     4801 gatgtcccca tgacactgta tgcagccatt gtccgcgact ataccggcag gacaccggaa
     4861 gcacgggagc agacgctgat tgtcacgcac ctgaatgagg accggcgcgt actgaacagc
     4921 atgattcatg atgcacggga aaaggccgga gaactggggc aggtgcaggt catggtgcct
     4981 gtcctgaaca cagcgaatat acgcgacggg gagctgcgtc gtctctccac ctgggagaat
     5041 aacccggatg cccttgccct ggtggataat gtgtatcacc ggattgccgg tatcagcaag
     5101 gatgacgggc tgataaccct gcaggatgcg gaaggtaaca cgcggctgat ttcgccccgg
     5161 gaggcggtgg ctgaaggcgt cacgctgtac accccggaca ccatccgggt ggggaccggt
     5221 gacaggatac gcttcacgaa gagtgaccgg gagcgcggtt atgtggccaa cagcgtctgg
     5281 acggtgacag cggtttccgg tgacagtgtc acactttctg acggtcagca gacccgtgtg
     5341 attcgccccg gtcaggagcg ggcagagcaa catattgacc tggcctatgc catcaccgcc
     5401 catggtgcac agggggcgag tgaaaccttt gccatcgcgc ttgaaggcac ggaaggtaac
     5461 cggaaactga tggccggctt tgagtcagcc tacgtggccc tgtcgcgtat gaagcagcat
     5521 gtgcaggtgt acaccgataa ccgtcagggc tggacggatg ccatcaacaa tgccgtacag
     5581 aaaggaactg cccacgatgt gtttgagccg aaaccggacc gggaggtcat gaatgcagag
     5641 cggctgttca gtacggcgcg ggagctgcgg gacgtggcgg caggccgtgc cgttctccgt
     5701 caggcggggc tggccggggg agacagtcct gcacggttta ttgctccggg acgtaaatat
     5761 ccgcaaccgt atgtggcact gccggcgttt gaccgtaacg gcaagtccgc cggtatctgg
     5821 ctgaacccgc tgaccacgga tgacggaaac gggctgcggg gattcagcgg tgaaggtcgg
     5881 gtaaaaggca gcggggatgc gcagttcgtg gctctgcagg gcagccgtaa cggagaaagc
     5941 ctgctggctg ataatatgca ggatggcgtc cggattgccc gtgataatcc tgacagtggt
     6001 gtggtggtaa gaatcgccgg tgaaggccgt ccgtggaatc ccggtgccat caccggtggc
     6061 cgcgtgtggg gggatatccc ggacaacagc gtccagccgg gagccggaaa tggcgaaccg
     6121 gtcacggcag aggtactggc acagcggcag gctgaagagg ccatccgccg tgaaacggaa
     6181 cgtcgcgcag atgaaattgt ccgtaaaatg gcagagaaca aacctgacct gccggacggc
     6241 aaaacagagc aggctgtcag ggaaattgcc gggcaggagc gtgaccgggc tgccataact
     6301 gaacgggaag ccgcgctgcc ggagagtgta ctgcgtgaac cacaacgggt gcgggaagcg
     6361 gtccgggaag ttgcccggga aaatttgctg caggagcgtc tgcagcagat ggagcgggat
     6421 atggttcgtg acctgcagaa agagaaaacc ccgggcggag actgatacag gaagacaaac
     6481 actgatgaca acggataaca cgaacacgac acgtaacgat tcactggctg cacggaccga
     6541 tacctggttg cagtcatttc tggtctggtc acccggacag cgggatatca tcaaaacggt
     6601 ggcactggtg ctgatggtac tggaccacat caatctgata ttccagctga agcaggaatg
     6661 gatgtttctg gccgggcgag gagcctttcc gctttttgcc ctggtgtggg ggctgaatct
     6721 gtcccgtcat gcgcatatcc ggcaaccggc cattaaccgg ctgtggggat ggggaattat
     6781 tgcccagttc gcatattatc tggcaggctt tccctggtat gaggggaata tcctgtttgc
     6841 ctttgcagtg gcggcacagg tgctgacgtg gtgtgaaacg cgcagtgggt ggcgtacagc
     6901 agcggccata ctcctgatgg ccctgtgggg gcctttgtcc ggcaccagtt acggtattgc
     6961 cgggttgctg atgctggcag tcagcaaccg gctgtaccgg gcggaagaca gagcggaacg
     7021 tctggcgctg gtcgcctgcc tgctggctgt tattccggcg cttaaccttg ccaccagtga
     7081 tgcagcggcg gtggccggtc ttgtgatgac ggtgctgacc gttggtctgg tgttgtgtgc
     7141 cggaaaatca ttaccccgtt tctggcccgg agactttttc ccgacgttct atgcctgtca
     7201 tctggctgtg ctgggcgttc tggcgctgtg acgggtgtgg tatctttggc cgcaagagga
     7261 tgattcgtca gaggcagaac acagcatgac agagcagaag cgaccggtac tgacactgaa
     7321 gcggaagaca gagggaacag cgactgtccg cagccggaaa accatcatca atgtcaccac
     7381 gccaccaaag tggaaggtga aaaagcagaa gctggccgag aaagcggccc gtgaagcaga
     7441 gctggcggca aaaaaagcgc aggccagaca ggcgctgtcc atttatctga acctgcccac
     7501 gctggatgag gctgtgaata ccctgaagcc ctggtggccg ggattatttg acggtgacac
     7561 gccccggctt ctggcctgcg gtatccggga cgtgttactg gaagacgtgg cgcagcggaa
     7621 tatcccgctc tcgcataaaa aactgcgcag ggcgctgaag gccatcaccc gttcagaaag
     7681 ctatctgtgt gccatgaaag ccggtgcctg ccggtatgac acggaagggt atgtgacgga
     7741 gcatatttct caggaggagg aagcgtatgc gggagcgcgt ctggcgaaaa ttcgtcgcca
     7801 gaaccggata aaggcagaac ttcaggccgt gcttgatgag aaataaaaaa agcctccccc
     7861 agagagagga ggcagggaaa taaggcttaa aaggaaataa cttccgcttc cgaaaggaag
     7921 ccagtccact gaattattta tcacaataat actgacaact aaagggggac aagaaaatga
     7981 atggattcag aaacagttca cggaacggcc aggtctggcg ttaccagcgt gccggcgggc
     8041 gggccgttat tctggaagtc agtggacgct ggatggaagc ggcagaagca tggcgacggg
     8101 ctgcctgtgt tgcgcctagg acagactggc agcagtttgc ccggaaaagg gctgaacact
     8161 gccaccggcg ctgccgggga agggggtaac gaaaaaagca gccttcatta ctccaggagt
     8221 cagaaggctg aaaggagttt atgagatttg cttcttaata tccggtcggg cagtatgacc
     8281 ggacagttct gagtagcaca gagtcttttc cgcattaagt cgatttttta tattttgtga
     8341 ttaatttcac aaaataaggt gttattcaat gtgtgctgcc ctattcaggg gggctgaaat
     8401 acaggtgcca tttatctgat atggagaata acatgaggaa atatattcca ctggtattat
     8461 ttatcttttc atggccggta ttgtctgcag atattcatgg acgggttgtt cgtgtactgg
     8521 acggtgatac catcgaggtc atggactcac tgaaggcggt gcggatcagg ctggtaaata
     8581 ttgatgcacc ggaaaagaaa caggattatg gccggtggtc aacagacatg atgaaatcac
     8641 tggttgcagg aaaaacggtt accgtcacat attttcagcg agatcgttat ggtcgtattc
     8701 tcgggcaggt ttatgcacca gacggaatga atattaatca gtttatggtc cgggccgggg
     8761 ctgcctgggt atatgagcag tacaacacag atcccgtgct acctgtcctt cagaacgaag
     8821 ccagacaaca aaaacgtggg ctctggtcag atgctgatcc ggttcccccc tggatatgga
     8881 ggcaccgtaa ataaagcgat ggcaatccta tcattcatct gttctcagcg ggaataaaaa
     8941 tggcaaaaac aaaacaggaa tggctgtatc agttacggcg atgttcatca gtcaatacgc
     9001 tggaaaaaat tattcataaa aacagagaca gtttatcaaa cagtgaacgt gaatcattta
     9061 attcagcagc agaccaccgg ctagcggaat taatcatcgg aaagttatat gacaggatac
     9121 caaaagagat atggaaatat gtaaggtaat aattcagcaa taattaattg ccaggagcag
     9181 ataaataatg aagttgatta tttttattct cattgttctg attattgcag cgctacttat
     9241 ccggattatc ctcagaagtg taaatcagca ttctcctttg ctgatgcaat tgcatgcggc
     9301 aggtatacgg accggtgatg cagagcgaat actgtccagc ggtgaatact ggcaacgtca
     9361 gacgacgctg ctgacagaaa gggaagtcag ttttatgaaa ggactgttca gaattgtgga
     9421 tatgacgcgg tggtatctgt gtccgcaggt acgggtcgcg gatatcgtcc agctgaacgg
     9481 gaatatccgg ccacgatcac gccagtggtg gcagttattc aggatggtgt ctcagtggca
     9541 tgttgatgtg gttatcgttg agctgcgttc gttcagtatt gttgcagcag tagagctgga
     9601 tgatgccagc catttacgac cggaacgcag acgccgggat attcttctgg aagaggttct
     9661 gaggcaggct ggtattccgt tgctcagaag ccacgatgcc agaaaactgc tgcagatgac
     9721 cggagaatgg ctgaatacaa c
//
LOCUS       DAJVSY010000158         9654 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.160, whole genome shotgun sequence.
ACCESSION   DAJVSY010000158 DAJVSY010000000
VERSION     DAJVSY010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9654
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.160"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(1..1094)
                     /gene="fdeC"
                     /locus_tag="OQQ19_003455"
                     /pseudo
     CDS             complement(1..1094)
                     /gene="fdeC"
                     /locus_tag="OQQ19_003455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308363.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="intimin-like adhesin FdeC"
     gene            2210..2311
                     /locus_tag="OQQ19_003456"
     CDS             2210..2311
                     /locus_tag="OQQ19_003456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804952.1"
                     /translation="MKENKVQQISHKLINIVVFVAIVEYAYLFLHFY"
     gene            2675..2938
                     /locus_tag="OQQ19_003457"
     CDS             2675..2938
                     /locus_tag="OQQ19_003457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HCS1804953.1"
                     /translation="MKPNIHPEYRTVVFHDTSVDEYFKIGSTIKTDREIELDGVTYPY
                     VTIDVSSKSHPFYTGKLRTVASEGNVARFTQRFGRFVSTKKGS"
     gene            2938..3078
                     /gene="ykgO"
                     /locus_tag="OQQ19_003458"
     CDS             2938..3078
                     /gene="ykgO"
                     /locus_tag="OQQ19_003458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HCS1804954.1"
                     /translation="MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQGRKK
                     KR"
     gene            complement(3113..3340)
                     /locus_tag="OQQ19_003459"
                     /pseudo
     CDS             complement(3113..3340)
                     /locus_tag="OQQ19_003459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414829.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            4163..4705
                     /gene="ecpR"
                     /locus_tag="OQQ19_003460"
                     /gene_synonym="matA"
     CDS             4163..4705
                     /gene="ecpR"
                     /locus_tag="OQQ19_003460"
                     /gene_synonym="matA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308351.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECP biosynthesis operon DNA-binding
                     transcriptional regulator EcpR"
                     /protein_id="HCS1804955.1"
                     /translation="MECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKD
                     FVFINLNTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAG
                     LSRDIRKELAYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV
                     YTHRRNAEAKLYSKIYKLVQ"
     gene            4731..5366
                     /gene="ecpA"
                     /locus_tag="OQQ19_003461"
                     /gene_synonym="matB"
     CDS             4731..5366
                     /gene="ecpA"
                     /locus_tag="OQQ19_003461"
                     /gene_synonym="matB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="common pilus major fimbrillin subunit EcpA"
                     /protein_id="HCS1804956.1"
                     /translation="MTHWDITSSIQLGKKCNEKKVLAIALVTVFTGMGVAQAADVTAQ
                     AVATWSATAKKDTTSNLVVTSLGSLAFQYAEGIKGFNSQKGLFDVAIEGDSTATAFKL
                     TSRLITNTLTQLDTSGSTLNVGVDYNGAAVEKTGDTVMIDTANGVLGGNLSPLANGYN
                     ASNRTTAQDGFTFTIISGTTNGTTAVTDYSTLPEGIWSGDVSVQFDATWTS"
     gene            5424..6092
                     /gene="ecpB"
                     /locus_tag="OQQ19_003462"
                     /gene_synonym="yagY"
     CDS             5424..6092
                     /gene="ecpB"
                     /locus_tag="OQQ19_003462"
                     /gene_synonym="yagY"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone EcpB"
                     /protein_id="HCS1804957.1"
                     /translation="MKKHLLPLALLFSGISPAQALDVGDISSFMNSDSSTLSKTIKNS
                     TDSGRLINIRLERLSSPLDDGQVISMDKPDELLLTPASLLLPAQASEVIRFFYKGPAD
                     EKERYYRIVWFDQALSDAQRDNANRSAVATASARIGTILVVAPRQANYHFQYANGSLT
                     NTGNATLRILAYGPCLKAANGKECKENYYLMPGKSRRFTRVDTADNKGRVALWQGDKF
                     IPVK"
     gene            6118..8641
                     /gene="ecpC"
                     /locus_tag="OQQ19_003463"
                     /gene_synonym="yagX"
                     /pseudo
     CDS             6118..8641
                     /gene="ecpC"
                     /locus_tag="OQQ19_003463"
                     /gene_synonym="yagX"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414825.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial usher EcpC"
     gene            8631..>9654
                     /gene="ecpD"
                     /locus_tag="OQQ19_003464"
     CDS             8631..>9654
                     /gene="ecpD"
                     /locus_tag="OQQ19_003464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial adhesin EcpD"
                     /protein_id="HCS1804958.1"
                     /translation="MRVNLLITMIIFALIWPVTALRAAVSKTTWADAPAREFVFVENN
                     SDDNFFVTPGGALDPRLTGANRWTGLKYTGSGTIYQQSLGYIDNGYNTGLYTNWKFDM
                     WLENSPVSSPLTGLRCINWYAGCNMTTSLILPQTTDASGFYGATVTSGGAKWMHGMLS
                     DAFYQYMQQMPVGSSFTMTINACQTSVNYDASSGARCKDQASGNWYVRNVTHTKAANL
                     RLINTHSLAEVFINSDGVPTLGEGNADCRTQTIGSLSGLSCKMVNYTLQTNGLSNTSI
                     HIFPAIANSSLASAVGAYDMQFSLNGSSWKPVSNTAYYYTFNEMKSADSIYVFFSSNF
                     FKQMVNL"
BASE COUNT         2625 a         2370 c         2257 g         2402 t
ORIGIN      
        1 gcaatacgga tcacttcaga tttgcggtac tcaagaacga tgttgttatt acgctcaacc
       61 aggtcatagc ggctgcctgc cagcattcga cgctcgcgaa tgctgtctgt atcgagttgt
      121 ttctccagag gttcgccaat ccgataatta acttccaggc caaagcgagt gtcattctcc
      181 ccactcttgc cctgcttatg cccggcactc agggtcagaa gaggcacagg cgtgtaattc
      241 acttcagcgg aaatcgcatg tggatctttc tggcgtttat ctttgccaaa cagcccaact
      301 tcatcgccat aatactgctc atacatcagg cttgcgccaa gctgcggtca ggcgggtaaa
      361 tagccctcag cacgaatatc ccagccattc gccgggcgtt cctgataatc ctcaatatcc
      421 ggcgattttt tccagccaga agcccgaata taaccattgg cgctcagttt cagataatcg
      481 cgccagtatt ccgcaccaac accaatgcgg gtatgactac gggataaatc atggtcgata
      541 aaggtgttca ccccccccat tcagtcattt cctgaaaaat gacgccagcc aaaaccaata
      601 tttgactgag tacgatcgtc tgtacgatgt attgccccct gagtgaacaa catatttgtc
      661 ggcgtatcat aaatcggata aagcatttcc agcgaagaat ccttcagcga gaaatcttta
      721 tcgacattca gtttgacgcg cgctgtacca tatttcccga gccactcctg tatttcctgg
      781 ttagctttag cggtggccat tccggtaata aaattacgtg tcgcatcgct atctggctga
      841 ctgcttaaaa atgtcccggc atttgcggca aacgacgcga catttttctc cacgttatta
      901 tcagcagtta ccgtagtatt tcccatgctc aaccgtggct gaaccgcatg ctgcgcacgt
      961 gccgccatta ctggggtaaa ggtgacagcg agtggaaaaa gaacctgaac agagatattt
     1021 gcccacgcca cgcagcgggc cagaactgaa taacgaaatc gtggttgttt atgacctgtt
     1081 ttataacgtg acattgagat aatttcctga tgaacgaatt aacgaacata ggcagacaca
     1141 aataatggcg tctgcttgtc agaaaaaccg gggatttccc ggtttccttt tccgcagaaa
     1201 aggaaatacc tttatgtaag aaagtgcacc gccacctgat atatccagtg tctgtagcca
     1261 ctcatcaggt ggttgggcgc gggattatat ttttatttat gggtaaaaat ttagcttttt
     1321 gtgcaagtca ttaaatagat acctaagtta tatttcttac tctgcggaca gtgaataatt
     1381 cattattcag actgaataat aatgacctgc ctttaattag caactattgg aaatacgtcg
     1441 aagtaggtat atacgccagg ataaaccgat atatttatta tggatattca ttttccttca
     1501 tcggactgta aattgcgggg atatcgaact tacactactc atcgcaacac tcaaacagat
     1561 ttatgaattt cgttcataac ccctgacaaa tcctgccgtc taatcgagct tttcccttta
     1621 cgttatgctt ctcatgaacg agaacacaac ttattcatga attaaccatt ccggataaac
     1681 tatggaatca aattcaggca tcgaaaggaa ctggctggtt tccgttaata gattaaatat
     1741 ctattactct cccgagagta aaactatcaa atcaatgagt aaccgataca gcctcacaaa
     1801 ttctttcaga taattaaccc gtcactgcgg cacgttctct cgtaaggcgt gcctgcagtg
     1861 taatccagta tgtatccggc atagttgacg gtttaataga actcaattcc tctccctggt
     1921 caccaacaac gatatcttgt ataacacccc aggagatacg acattatgat gagatgcgat
     1981 atgctcctca gcaccaatca acgccaggac tgggccagtc ttgagatcag actcattccc
     2041 gggactgact tcagtcgaca tatatcaatg acgttggtgc aataaaagat agccgatgta
     2101 atacatctat tcaaatttgt gatacatgtc aaaaaactgg ttgaccaaac tcgttattta
     2161 tataagggca cttacgaagt gcgctctttt ttaaagcgag gaagtaccaa tgaaagagaa
     2221 taaagtacaa caaatcagtc ataaactaat taatatcgtt gtttttgtcg caattgtaga
     2281 atacgcctat ttatttctcc atttctatta ataacggcaa taaactgttc acttcagtga
     2341 tatttaaaat atgcattctc tccctttttg taagtaatta ttatatccgt gggagaggaa
     2401 tacacgctgt caggtaatca atcatactgc gataaatcat cggccagtaa agtggagata
     2461 acctccattg tcgaaaaatc catactctca gcgaaaccat catcaatcac tcatccaggc
     2521 gtttatggga gcgtcgccaa cggctgttaa caatgccaga cttccccgtt gcggaaattc
     2581 cacataccac taatggtcac agggattggg tgttgaaatg atccggatga gcatgtatct
     2641 ttatggttat gctataacat aacaggtaaa aatgatgaag cccaatatcc atcctgagta
     2701 tcgtactgtg gtgttccacg acaccagtgt tgatgagtac tttaaaatcg gctcgactat
     2761 caaaacagac cgtgagattg agctggatgg cgtaacgtat ccgtacgtga caattgatgt
     2821 ctcttctaaa tcgcacccgt tctatacagg gaagctgaga acagtggcat cagaaggaaa
     2881 tgttgcacga ttcacccaac gttttggtcg ttttgttagc acgaaaaagg ggtcgtgatg
     2941 aaagttctta actctctgcg taccgcaaaa gaacgccatc cagactgtca gattgtgaag
     3001 cgaaaaggac ggctatatgt gatttgtaaa tctaatccac gttttaaggc cgttcagggg
     3061 cgtaagaaaa aacgttgatt caaaattcga cggattaacg atatttgtct gattaataat
     3121 cagatcggat taatgttggt gtgtttataa caccaacatt aattttcctg gggatatatt
     3181 cttcctgttc atttgaggcc aactgcctga cgtttctcta cgaatattcc attatcttaa
     3241 tgttgacttg ttgaccagct tcgcccctgt atgctggcat caactctctt ttagactgaa
     3301 cacgccactc agtctcctcc ctttgcggcg cagcctgcat tttcactcaa actgttaaga
     3361 tgataaatgt ggtaaatctg ttggtactaa cataaaaacg tttacgccac aggaacagtc
     3421 tgatccaccg gtaaccccgt cgccgacgtt cgagtgccag ttagagtaac gcgcacagat
     3481 aactgcactc agtgccctga caaagaggcc atcgttcctg tgacagctgg cagccttcgt
     3541 ttaacttcac ttaatctggc tcttgagggc ttaccgaaca gatgacgtac atacgcccgt
     3601 tcaattttcc atcacttatt gtaatgaaca cctataacca ttttgtgcgg catgttaatc
     3661 cattaaaatt tcttactgat tggcaaatca tcttcaatga cagctcatta tagttttata
     3721 ttctatccct tacccttaaa acttgttttt ttactagtcc atcacacagc gcattaagac
     3781 tattcctaac acttcagggc aaagttcctg accaatataa aatgcaagta agaattgaac
     3841 gttatattgc caataacctt atgaaaccaa atgtcttttt cttcttatca aaaaagcaat
     3901 attttcagtt tttctaaata ttgacttaac cattgaattc cttttccgtt cacatattga
     3961 cactcatcga aaaaaaaaca taaatttaag cccaatcgaa aataattaaa cttaatctcg
     4021 tttaaccttt attgatatgt actacgtatc ttatttactt ccggtttact aaggaaactg
     4081 aatgcacctg taaaaattac aggtttggaa agtagtgaca tggcaaagtg attacagtag
     4141 ggactatgag gttaaaaacc atatggaatg tcaaaaccgt tctgataaat acatctggtc
     4201 tccccatgac gcctacttct ataaaggact atctgaactg attgtggata tcgacagatt
     4261 aatttatctg tcgttggaga aaattagaaa agatttcgtg tttatcaatc tcaatacgga
     4321 ttctttatct gaatttataa accgtgataa tgaatggtta tccgcggtaa aggggaaaca
     4381 ggtcgtattg attgcggcca gaaagtcaga agccttagct aattattggt actacaacag
     4441 caatattagg ggcgtggtat acgctggact gagtcgtgat attagaaaag aactggccta
     4501 tgtgattaat ggcaggttcc tgagaaaaga tattaagaaa gataaaatca cggaccggga
     4561 aatggaaatt atccgcatga cggcccaggg aatgcaacct aaatcgattg ccagaattga
     4621 aaattgtagt gtgaagacag tgtataccca tcggcgtaat gctgaggcca agctgtactc
     4681 aaaaatatat aagttggttc agtaaactcc aggcaagtta gttttaaaaa atgactcact
     4741 gggacatcac gtcctcaatt caactcggga agaaatgcaa tgaaaaaaag gttctggcaa
     4801 tagctctggt aacggtgttt accggcatgg gtgtggcgca ggctgctgac gtaacagctc
     4861 aggctgtagc gacctggtcg gcaacagcca aaaaagacac caccagtaat ctggttgtga
     4921 cgtcactcgg tagcttggcg ttccagtatg ccgaaggcat taaaggtttt aactcacaga
     4981 aaggtctatt tgacgtggct atcgagggtg actcaacggc taccgccttt aaactgacct
     5041 cacgtcttat caccaacaca ttaactcagt tggatacctc aggttccaca ctgaatgtgg
     5101 gcgtggatta taacggcgcg gcagtcgaaa aaactggcga taccgtgatg atcgataccg
     5161 ccaacggcgt actgggcggc aaccttagcc cgctggctaa cggttacaat gccagcaatc
     5221 gtaccaccgc acaggatggt ttcaccttca ccatcatcag cggcaccacc aatggtacca
     5281 ccgcagtaac cgattacagc actctaccgg aaggcatctg gagcggcgac gttagcgtac
     5341 agttcgacgc gacctggacc agttaatctc tctgatgtac cagcaggggt agcccccctg
     5401 ctttattcct ggacggaatt gttatgaaaa agcaccttct gcctctcgct ctgctgtttt
     5461 ccggaatatc tccggcccag gcgctggatg tcggcgatat atcatcgttt atgaacagtg
     5521 acagcagcac gctgagcaaa acgatcaaaa acagtaccga cagtggtcgc cttatcaata
     5581 tccgtctcga acggctctct tcaccgcttg acgacgggca ggttatctca atggacaagc
     5641 cggatgagtt gctactcact cccgccagct tgctgctacc cgcccaagcc agcgaagtga
     5701 tccgcttctt ctataaggga cccgcagatg aaaaagagcg ctactaccgc attgtctggt
     5761 ttgatcaggc cctcagtgat gcgcagcgcg ataatgccaa ccgcagcgct gtggccactg
     5821 cttccgcccg catcggcacc attctggtcg tcgcccctcg tcaggcgaac taccactttc
     5881 agtacgccaa cggctccctg acaaatacag gaaatgcgac gctgcggatc ctcgcctacg
     5941 gcccctgcct gaaagccgcc aacggtaagg agtgtaaaga gaattactac ctgatgccgg
     6001 gcaagtcgcg tcgttttacc cgcgtggaca ctgcggataa caaaggacgg gttgcacttt
     6061 ggcagggtga taagttcatt cccgtgaaat agatagctgt gcagatggat aacgacaatg
     6121 cctttacgac ggttctcccc aggactgaaa gcccagtttg ccttcggcat ggtctttttg
     6181 ttcgttcagc ccgatgccag cgctgctgac ataagtgcgc agcaaatagg tggggtgatt
     6241 attccgcagg ccttcagtca ggcgcttcag gacggcatga gcgtcccgct ctatattcat
     6301 ctcgccggta gtcagggtcg ccaggacgat cagcgaatcg gcagcgcttt tatctggctg
     6361 gatgatggac agctacgcat ccggaaaata cagctggaag agagtgaaga taacgccagt
     6421 gtcagcgaac aaactcgaca gcagctgatg gctctggcga acgccccgtt caatgaggcc
     6481 cttaccatcc cctgactgac aacgcgcagt tggatctcag cttgcgccaa ctgctgctgc
     6541 agctggtggt caagcgcgaa gcgctgggca ccgtactacg ctcacgtagc gaagacatcg
     6601 ggcagtccag tgttaacacc ctcagcagta atctgagcta taacttgggc gtctataaca
     6661 accagttgcg taacggcggg agcaacacat ccagctatct gtcgctgaat aacgttactg
     6721 cgctgcgcga acatcatgtg gtgctcgacg gctcgctgta cgggatcggt agcggtcaac
     6781 aggacagtga attatataaa gcgatgtatg aacgcgattt tgccggtcac cgatttgccg
     6841 gtggaatgct cgacacctgg aacttgcagt cattagggcc gatgaccgcc atttcagcag
     6901 ggaagattta cggcctttcc tggggaaacc aggccagctc caccatcttc gacagcagcc
     6961 agtcagccac gccagtgatc gcctttttac cggcggcggg cgaagtacat ctcacccgtg
     7021 atgggcggct actaagcgtt cagaacttca ctatgggcaa tcatgaagtg gatacccggg
     7081 gtctaccgta cggtatttac gatgtggaag ttgaggtgat cgttaacggt cgcgtgatca
     7141 gcaaacgcac tcaacgggtc aataagctgt ttagccgggg cgcggcgtcg gtgcaccact
     7201 ggcgtggcag gtatggggcg gtagctttca tatggatcgc tggtcggaaa acgggaaaaa
     7261 gacgcgacca gctaaagaga gttggctagc aggtgcctcg acctccggct cattgagtac
     7321 gcttagctgg gcggcaacgg gatatggata cgataatcag gcggtgggtg aaacccgtct
     7381 gacgctgccg cttggggggg cgatcaacgt taacctgcaa aatatgctgg ccagtgacag
     7441 ctcatggagc agcatcggca gcatcagcgc tactctaccg ggaggcttta gttcgctgtg
     7501 ggttaaccag gaaaaaaccc gtattggcaa tcaattgcga cgtagcgatg ccgacaaccg
     7561 tgcaatcggc ggcacactca acctgaactc actgtggtcg aagctgggca cattcagcat
     7621 cagctacaat gatgaccgcc gttacaacag ccattattac acggcagatt actatcaaaa
     7681 tgtctacagc ggtacctttg gttcgcttgg cctgcgggcc ggtattcagc gctataacaa
     7741 cggcgacagc aacgccaata cagggaaata tatcgctctc gatctctcgc taccactggg
     7801 caactggttt agcgcaggga tgacccatca aaacggctac accatggcaa acctgtcagc
     7861 acgcaaacag tttgatgaag ggaccattcg cactgttggt gccaatctgt cacgtgccat
     7921 ctccggcgat accggtgatg acaaaaccct cagcggtggg gcgtatgcac agttcgacgc
     7981 tcgttacgcc agcggaacgc tgaacgtcaa tagcgcggcg gacggctacg tcaataccaa
     8041 cttgaccgcc aatggcagcg tcggctggca gggtaaaaac attgctgcca gcgggcggac
     8101 tgatggcaac gctggggtga tattcaacac cgggctggag gacgacggtc agatcagcgc
     8161 caaaatcaac gggcggattt tcccgcttaa cggcaagcgt aactatctcc cgctctctcc
     8221 ctatggaaga tatgaggtgg agttacagaa cagcaaaaac tcactcgaca gttacgatat
     8281 cgtcagcggc cgcaaaagtc gtctgactct ctatccaggc aatgtcgctg tcattgagcc
     8341 agaggtgaag cagatggtta ccgtctccgg tcgtatccgt gcggaagacg gcacactgct
     8401 ggctaacgca cggattaaca accatatcgg ccgaacccga accgatgaaa acggcgagtt
     8461 tgtcatggac gtggataaga aataccccac tatcgatttt cgctacagtg gcaataaaac
     8521 ctgcgaagtg gctctggaac tcaaccaggc gcgcggtgcc gtctgggtcg gtgatgtggt
     8581 ctgcagcggc ctctcatcgt gggcggcggt gacgcagaca ggagaagaga atgagagtta
     8641 acctactaat aacgatgata attttcgcgc taatctggcc agtaactgcg ctcagagcgg
     8701 cagtgagcaa aacaacctgg gcggatgcac cggcacgcga gtttgtgttt gtcgaaaaca
     8761 actcagacga caactttttc gtcactcctg gcggggcgct ggatccgcgc ctgaccggtg
     8821 ccaaccgctg gaccggttta aaatacactg gttcaggaac catctatcag caaagcctcg
     8881 gctacattga taacggttac aacaccggcc tttataccaa ctggaagttt gatatgtggc
     8941 tggaaaattc gccggtttca tctcctttaa ctggcttacg ctgcatcaac tggtacgcag
     9001 ggtgtaatat gaccaccagt cttatcctgc cgcaaaccac cgacgccagt ggattttatg
     9061 gcgcgacggt gaccagcggc ggcgcgaagt ggatgcacgg catgttgtca gacgcgtttt
     9121 accagtatat gcaacaaatg cccgtcggca gcagctttac aatgaccatc aatgcctgtc
     9181 agacctctgt gaactatgac gccagcagcg gcgcgcgttg taaggatcag gcctccggca
     9241 actggtatgt tcgcaatgtc acccatacga aagcagcaaa tcttcggtta ataaataccc
     9301 actcgctggc ggaggtattt atcaacagcg acggggtgcc gaccctgggc gaagggaacg
     9361 ccgactgccg gacacagacc atcggcagcc tttcaggatt aagttgtaag atggtcaact
     9421 ataccctgca aacaaacgga ctcagcaaca cctcaatcca tatattcccg gcgatcgcca
     9481 actcgtcgtt agcctcggcc gtcggggcgt acgatatgca gttcagtctg aatggcagtt
     9541 catggaaacc ggtgagcaat accgcctatt actacacctt caacgagatg aagagcgcag
     9601 actcgatcta tgttttcttc tcgagcaact tctttaagca gatggtgaac ctcg
//
LOCUS       DAJVSY010000159         9498 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.161, whole genome shotgun sequence.
ACCESSION   DAJVSY010000159 DAJVSY010000000
VERSION     DAJVSY010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9498
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.161"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..191
                     /locus_tag="OQQ19_003465"
     CDS             <1..191
                     /locus_tag="OQQ19_003465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804959.1"
                     /translation="AHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALRFNP
                     LATLPSGDKVAAAVGITP"
     gene            complement(296..832)
                     /gene="rcdA"
                     /locus_tag="OQQ19_003466"
     CDS             complement(296..832)
                     /gene="rcdA"
                     /locus_tag="OQQ19_003466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator RcdA"
                     /protein_id="HCS1804960.1"
                     /translation="MRRANDPQRREKIIQATLEAVKLYGIHAVTHRKIATLAGVPLGS
                     MTYYFSGIDELLLEAFSSFTEIMSRQYQAFFSDVSDAQGACQAITDMIYSSQVATPDN
                     MELMYQLYALASRKPLLKTVMQNWMQRSQQTLEQWFEPGTARALDAFIEGMTLHFVTD
                     RKPLSREEILRMVERVAG"
     gene            916..2124
                     /locus_tag="OQQ19_003467"
     CDS             916..2124
                     /locus_tag="OQQ19_003467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1804961.1"
                     /translation="MTVNSSRNALKRRTWALFMFFFLPGLLMASWATRTPAIRDILSV
                     SIAEMGGVLFGLSIGSMSGILCSAWLVKRFGTRNVILVTMSCALIGMMILSLALWLTS
                     PLLFAVGLGVFGASFGSAEVAINVEGAAVEREMNKTVLPMMHGFYSLGTLAGAGVGMA
                     LTAFGVPATVHILLAALVGIAPIYIAIQAIPDGTGKNAADGTQHGEKGIPFYRDIQLL
                     LIGVVVLAMAFAEGSANDWLPLLMVDGHGFSPTSGSLIYAGFTLGMTVGRFTGGWFID
                     RYSRVAVVRASALMGALGIGLIIFVDSAWVAGVSVVLWGLGASLGFPLTISAASDTGP
                     DAPTRVSVVATTGYLAFLVGPPLLGYLGEHYGLRSAMLVVLALVILAAIVAKAVAKPD
                     TKTQTAMENS"
     gene            2124..2939
                     /gene="ybjI"
                     /locus_tag="OQQ19_003468"
     CDS             2124..2939
                     /gene="ybjI"
                     /locus_tag="OQQ19_003468"
                     /EC_number="3.1.3.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-(5-phospho-D-ribitylamino)uracil
                     phosphatase"
                     /protein_id="HCS1804962.1"
                     /translation="MSIKLIAVDMDGTFLSDQKTYNRERFMAQYQQMKAQGIRFVVAS
                     GNQYYQLISFFPEIANEIAFVAENGGWVVSEGKDVFNGELSKDAFTTVVEHLLTRPEV
                     EIIACGKNSAYTLKKYDDAMKTVAEMYYHRLEYVDNFDNLEDIFFKFGLNLSDELIPQ
                     VQKALHEAIGDIMVPVHTGNGSIDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGN
                     DIEMLRQAGFSFAMENAGSAVVAAAKYRAGSNNREGVLDVIDKVLKHEAPFDQ"
     gene            3025..3309
                     /locus_tag="OQQ19_003469"
     CDS             3025..3309
                     /locus_tag="OQQ19_003469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804963.1"
                     /translation="MIMKNCLLLGALLMGFTGVAMAQSVTVDVPSGYKVVVVPDSVSV
                     PQAVSVATVPQTVYVAPAPAPAYRPHPYARHLASVGEGMVIEHQIDDHHH"
     gene            complement(3350..4580)
                     /gene="mdfA"
                     /locus_tag="OQQ19_003470"
                     /pseudo
     CDS             complement(3350..4580)
                     /gene="mdfA"
                     /locus_tag="OQQ19_003470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308949.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdfA"
     gene            4865..5461
                     /gene="ybjG"
                     /locus_tag="OQQ19_003471"
     CDS             4865..5461
                     /gene="ybjG"
                     /locus_tag="OQQ19_003471"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HCS1804964.1"
                     /translation="MLENLNLSLFSLINATPDSAPWMISLAIFIAKDLITVVPLLAAV
                     LWLWGLTAQRQLVIKIAIALAVSLFVSWTMGHLFPHDRPFVENIGYNFLHHAADDSFP
                     SDHGTVIFTFALAFLCWHRLWSGSLLMVLAVVIAWSRVYLGVHWPLDMLGGLLAGMIG
                     CLSAQIIWQAMGHKLYQRLQSWYRFCFALPIRKGWVRD"
     gene            5519..6277
                     /gene="deoR"
                     /locus_tag="OQQ19_003472"
     CDS             5519..6277
                     /gene="deoR"
                     /locus_tag="OQQ19_003472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor DeoR"
                     /protein_id="HCS1804965.1"
                     /translation="METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNN
                     HSAPVVLLGGYIVLEPHSASHYLLSDQKSRLVEEKRRAAKLAATLVEPDQTLFFDCGT
                     TTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPIDFQQT
                     LNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPA
                     RMGDLKRFDIVVSDCCPEDEYVKYAQTHRIKLMY"
     gene            complement(6324..7515)
                     /gene="dacC"
                     /locus_tag="OQQ19_003473"
                     /pseudo
     CDS             complement(6324..7515)
                     /gene="dacC"
                     /locus_tag="OQQ19_003473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308946.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
     gene            7762..8387
                     /gene="gstB"
                     /locus_tag="OQQ19_003474"
                     /pseudo
     CDS             7762..8387
                     /gene="gstB"
                     /locus_tag="OQQ19_003474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308945.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase GstB"
     gene            complement(8384..>9498)
                     /gene="yliI"
                     /locus_tag="OQQ19_003475"
     CDS             complement(8384..>9498)
                     /gene="yliI"
                     /locus_tag="OQQ19_003475"
                     /EC_number="1.1.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aldose sugar dehydrogenase YliI"
                     /protein_id="HCS1804966.1"
                     /translation="HRQSFFLVPLICLSSALWAAPATVNVEVLQDKLDHPWALAFLPD
                     NHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS
                     YSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLF
                     IALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQGM
                     AMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGT
                     EQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL
                     TDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSPRN"
BASE COUNT         2295 a         2456 c         2344 g         2403 t
ORIGIN      
        1 cggcgcactt catgatgtcg ggtggaaaca ttctggcctt acaaaaaatt ctcggacacc
       61 acgatataaa aatgactatg cgttacgcac atctggcacc ggatcatctg gaaacggcgc
      121 tccgtttcaa tcctctggca acgctgccaa gtggcgacaa agtggcggca gcggttggca
      181 ttaccccgta ataaccacca ctgaccacca acctaactta ttgtttttaa tctaacttat
      241 tgttttcatt aacccgttta cataaatggg ttttttgtta tctaaaattt atctactacc
      301 ctgcaaccct ctcaaccatc ctcaaaatct cctcgcgcga tagcggctta cggtcggtga
      361 caaaatgcag cgtcatcccc tcaataaacg catcaagcgc gcgggcggtt ccgggttcaa
      421 accattgttc gagcgtttgc tgactgcgct gcatccagtt ttgcattacc gtttttaata
      481 gcggttttcg gctagccagc gcgtagagct ggtacatcag ctccatatta tccggcgttg
      541 caacctgtga gctgtagatc atatcggtga tagcctggca tgcgccttga gcatcactaa
      601 catcgctaaa aaatgcctga tattgccggg acataatctc agtaaaactg ctgaacgcct
      661 ccagcaacaa ctcatcaatt cctgaaaaat agtaggtcat cgatcccaac ggtaccccgg
      721 caagggtagc aattttgcgg tgcgtaacag catgtattcc gtaaagtttc accgcctcca
      781 gcgtggcctg gataattttt tctcgccgtt gcggatcgtt agcgcgacgc atgtcatttc
      841 ctctgtctgc aattgtgtac aaatgtacac aaccttgcta atgttgtctt ccctcttctt
      901 attttgacgt gatctatgac cgtaaattct tcacgtaatg cattgaaacg ccgaacctgg
      961 gcgctgttta tgttcttctt tttgccaggc ctgttaatgg cgtcctgggc aacccgtacg
     1021 cctgctatcc gcgatattct ctctgtctcg atcgctgaaa tgggcggtgt tctctttggt
     1081 ctgtcgatcg gttcgatgag cggtattctc tgctcggcgt ggttagtgaa acgctttggg
     1141 acacgtaatg tcatcctggt cacgatgtcc tgcgcattga tcgggatgat gatattaagt
     1201 ctggcactct ggctgacatc gcccctgctc tttgccgttg gtctcggcgt ctttggggca
     1261 agttttggtt ctgcggaagt ggcgataaac gttgaaggtg ccgccgttga gcgagaaatg
     1321 aataaaacgg ttttgccgat gatgcacggt ttttatagcc tgggcacgct ggcaggcgct
     1381 ggtgtcggga tggcactgac ggcctttggc gttccggcaa cggtgcacat tttattggcg
     1441 gcgctggtag gtatcgcgcc tatttatatc gccattcagg caatccctga cggtacgggc
     1501 aaaaatgctg ccgatggcac ccagcatggc gaaaaaggca ttccttttta tcgcgatatc
     1561 cagttgctgt tgattggtgt tgtagtgctg gcgatggcct ttgccgaagg ttctgccaac
     1621 gactggttac ccttattaat ggttgacggt cacggtttta gccctacttc cggctcgctg
     1681 atttatgccg gttttaccct ggggatgacc gttggacgct tcactggcgg ttggttcatc
     1741 gaccgttaca gtcgcgttgc cgtggttcgg gccagtgcac taatgggggc gttgggtatt
     1801 gggctgatta tttttgtcga tagcgcctgg gtcgctgggg tgtctgttgt actctgggga
     1861 ctgggtgcct cgctgggctt cccgctgacc atttctgccg ccagcgatac cggccccgat
     1921 gcaccaaccc gcgtcagtgt ggtagcaacg accggttatc tggctttcct cgtcgggccg
     1981 ccgctgctgg gctatctcgg cgaacattat ggattacgta gtgcaatgct ggttgtactg
     2041 gcgctggtta ttctcgcggc tattgtcgcg aaagccgtcg ccaaacccga taccaaaacg
     2101 cagacggcga tggagaatag ttgatgagca ttaaattaat tgcggtagac atggatggta
     2161 ctttcttaag cgatcaaaaa acctataacc gtgagcggtt tatggctcag tatcagcaaa
     2221 tgaaagcaca aggcattcgc tttgtggtcg ccagcgggaa tcaatattat cagttgatct
     2281 ctttcttccc tgaaattgct aatgaaattg cctttgtggc tgaaaacggc ggctgggtag
     2341 tgagtgaagg caaagatgtt tttaatggcg agctgtcgaa ggatgccttt actactgtcg
     2401 tggaacattt gctgacgcgc ccggaagtgg aaattattgc ctgcggaaaa aatagcgcct
     2461 atacgctcaa aaaatatgac gatgccatga aaacggtggc ggaaatgtat tatcaccgtc
     2521 tggaatacgt tgataacttt gacaacttag aagatatttt ctttaagttt ggcctgaatc
     2581 tttccgatga actgattcca caagtacaaa aagcattaca tgaggccatc ggcgatatta
     2641 tggtgccagt ccacaccggc aacggcagca tcgatctgat tatccccggc gtacataaag
     2701 ccaatggcct tcgccaactg cagaaattat ggggaataga cgacagcgaa gtggtggtct
     2761 ttggcgatgg cggtaacgat attgagatgc tgcgtcaggc aggctttagt tttgcaatgg
     2821 aaaatgccgg cagcgcggtc gtcgcagcgg caaaataccg ggcaggctcc aataaccgtg
     2881 aaggcgtact ggatgtgatc gataaagtgc ttaaacacga agcgccattt gaccaataaa
     2941 aacggcagca cgcccggcaa cacaatacct gaatgaaggc tgcataattc gcggaaatta
     3001 acccgctgca ttatttcagg cgaaatgatt atgaaaaatt gtctactgtt gggcgcgctt
     3061 ttaatgggct ttactggtgt ggcgatggcg caaagtgtca ccgtcgatgt gccgagtgga
     3121 tacaaagtgg ttgtagttcc tgattcagtc agcgttccac aagcggtcag cgtcgcgact
     3181 gtgccgcaaa ccgtctatgt ggctcctgcg ccagctccgg cttaccgccc gcatccttat
     3241 gctcgccatc ttgccagcgt aggtgaaggg atggttatcg aacaccagat tgacgaccat
     3301 caccattaat tcgagaatgc ctgatcgcac aaagcagtca ggcatttttt tacccttcgt
     3361 gagaatttcc catctgttta tcttttaaaa agataaccat cagcgacagc cacaaaattc
     3421 cgttgacaag gttgaagaga ttaaactgtc cgttgccccc gttcagccag gcatgtttgc
     3481 tgatttcaat accaacggta aagatcagca tttgcagcat tcccatcgcc gcagaaaccg
     3541 tacctttact catatcgctg gcaaacaggg ttaatcgcac cagtcccgca ttcgccagac
     3601 caataccgaa agcataaata cttaacccgg cagtcatcca taaatacgcg tgcgatgaga
     3661 taaccgttgc cgcagcagcg accaacagac caatcataat cggccagccg cccataatta
     3721 tcagcgaacg tacggtgcgg cgcgaggtca gacgcgctaa cagcaagtta cccgcaatta
     3781 acgccccgaa aataggcact tgcagcaagc catattcata gctgctcaac tgctcgccgg
     3841 taatgatgat aatcggcgac tgggcgatcc acgccagcaa tggcaggcta acgaatccca
     3901 gcgccagcgc ccccgccaca aagcggccgt tcttcagcac cagcttatag tcacgaccga
     3961 gttctttcag tgacagtttc tcgcctatac gcgtggcggt ttcaggcata gctcgttgca
     4021 gaccgaaaaa ggagatcgct gccaatgcgg caaacaaaac aaacatcccc tcccagggca
     4081 gcacatggat ccacgccgcg cccaccagcg gaccaagtag cggagcaatc agcgccacgt
     4141 tcgccatcag cgcggtgatc ttgatacaaa ccgcctcttc gaaagattcc tgaattgcgg
     4201 cgtatcccac agcgccaatg aaacagaggc ttatgccctg caagaagcgc aacagagtga
     4261 attgttcaat gttttgcgcc agtaatattg ccagacaggt gatgataaac cacaccaccc
     4321 ccgccagcat caccggacgg cgaccaatac gatccgacag cggccccagg agccattgta
     4381 aaaacatccc gcccgccaga tatgcggtca ttgaagtagg aacccaatca atgcccgcct
     4441 gatattgttc caccacggcc aacataccgg gttgaatcat atctgccgat ataggttgaa
     4501 aattcgtaaa gcaccagaca gagagggaaa agtaacgcct gacgtccaag cctggcaccg
     4561 gaagctaatt tattttgcat gcaatttctt cgccaataat aatcgcgcag agtttaataa
     4621 aagcgcagct aacgagaaag cgaattttgt agctgaaacc acggttaagc acattcttac
     4681 attattgcga gtatagctac gctttcttta agttttattt aacctatgcc cgttacaatc
     4741 acccaccgta aacaggccgc ttgagggaaa taagacgatg ccgctttacc cagtttaacc
     4801 tgcactttat tctcaacgac ttgcctgtat tggctccctt ttaatcactt tgcgtcggga
     4861 agttatgctg gaaaatttga atctctctct attctctctt attaacgcga cgccagactc
     4921 ggctccgtgg atgatctcgt tggcgatttt tattgctaaa gatttgatta ccgtggtgcc
     4981 gctgctggcc gcggtgcttt ggttgtgggg gcttacagca caacggcaac tggtgataaa
     5041 aatcgctatc gcgctggcgg tcagcctgtt tgtgtcctgg acgatgggac atctttttcc
     5101 gcacgaccga ccctttgtcg aaaatatcgg ctataacttc ctgcatcatg cggcggatga
     5161 ctcattccca agcgaccacg gtacggtgat tttcaccttt gcactggcat ttttatgctg
     5221 gcatcgcctg tggtccggct cacttttaat ggtgctggcc gtcgtcattg cctggtcgcg
     5281 cgtttatctt ggcgtccact ggccgctgga tatgctcggt ggattgctgg caggtatgat
     5341 tggctgcctt agtgcccaga ttatctggca agcgatgggg cataaactct atcaacgtct
     5401 gcaatcgtgg tatcgcttct gttttgcatt accgatccgc aaaggctggg tgcgtgactg
     5461 atctctgcta aaaagtgtag tattgagcgg ctcgcttcaa taactattca gagggattat
     5521 ggaaacacgt cgcgaagagc gtatcgggca gctgctgcaa gaattaaaac gcagcgataa
     5581 gttacatctt aaagacgccg ccgccctgct tggggtttcg gagatgacga ttcgtcgcga
     5641 tctgaacaac cacagtgcgc ccgtcgtttt gctcggcggc tatattgttc tggaaccgca
     5701 tagtgccagc cattacctgt taagcgatca aaaatcccgc ctggtggaag aaaaacgccg
     5761 ggcggcaaaa ctggctgcga cactggtaga acccgatcag accctctttt ttgactgtgg
     5821 caccaccacg ccgtggatta ttgaagcgat tgataatgaa atccctttta ccgccgtttg
     5881 ttattcgcta aatacctttc tggcgctgaa agagaaaccc cattgccgcg catttctgtg
     5941 cggtggtgaa tttcacgcca gcaacgccat tttcaaaccc atcgattttc agcaaacgtt
     6001 gaataatttt tgcccggata tcgcttttta ttccgcggcg ggcgtgcatg tcagtaaagg
     6061 cgctacctgt tttaatcttg aagagttgcc ggtaaaacac tgggccatgt cgatggcgca
     6121 aaagcatgtg ctggttgtcg accacagtaa atttggcaag gtccgtccgg cgcgcatggg
     6181 tgacctgaaa cgctttgata ttgtggtgag tgattgttgc ccggaagatg agtatgtgaa
     6241 gtacgcgcag acgcaccgta ttaagttgat gtattaatga cgtataaccg gatgacgttt
     6301 cgcgccatcc ggttatcaga agattaagag aaccagctgc cgaaccactg atggaatttc
     6361 atcatcacga aatcccacat cctaccaaag aatccgccct cttccacatt ttccatcacg
     6421 atcagcggac gctgctcaat ggatttaccg ttaagctgga aatcaatggt cccgacaacc
     6481 tgaccttttt tcagcggtgc ggtaagctgc ggttccgtta acgtgtagct cgccttcagg
     6541 tttttcagct gcccacgcgg tatggtcact gagcccgctt cgcctgcccc gagattcact
     6601 tcgctcttat caccaaacca gacgcgctga gtcacaaagg tggcatcagg tttaattggc
     6661 gtcacggttt caaagaagcg gaaaccccag gtcaataatt tctcagactc atcggtcagt
     6721 tttcgccccc aacactacgg agattaaacg catatcgccc tgggtagccg aagcaaccag
     6781 attatatccc gcgcctgccg tggttcctgt cttcatgcca tcaacattca gattgctgct
     6841 ccacagcaga cggttacggt taggctgacg aattttgttg aaggtgaact ctttctcttt
     6901 atgaatggcg tactcttccg gcacatcgtg gatcaatgct ttacccagca atgccatatc
     6961 gcgcgcggta ctgaactgcc ccggcgcatc caggccgtgc accgtctgga aggtagtgtt
     7021 ggtcagaccc agttttttgg cataaccatt catcagacca ataaatgact cctggctccc
     7081 ggcaacgtaa tcggccagcg caatacaggc gtcattaccg gactggataa tcacatcttt
     7141 gttcaagtct gccaccgaaa cctgatcgcc cggtttgagg aacattaccg atgaaccacg
     7201 cagtgccgga tttcccgtcg cccaggcatc tttaccgacc gtcaccatat cggtgagttt
     7261 aatcttatcg gccttaagcg cctgcccaac cacatagctg gtcatgattt tagtcaggct
     7321 cgcgggatcc agtttctcat ccgcattgcc ttctgccagc actttaccgc tggcgtaatc
     7381 cattaaaatc catgcacgcg catccacgct cggcgcttca acggtttgtt cggccgcgaa
     7441 tgccgttggg gcaaaaagga ataaaaatgc agaacccgct gcaagaccac gaaggagaga
     7501 ggagtattgc gtcataaatg ccacccgagt atccattcaa aaaaaatacg ttatatcgcc
     7561 gtatgataag ttcggtgatt aataacgcac acacaaactt aaagaaaccg taagttggta
     7621 aagtttttaa agtttatgca atatcctgcc gcttcgctgc ttctggtgtc atttttttgc
     7681 cagctgttgc ttaaaagtta actttacttc accatcggag tcctgttcag cctgtggctg
     7741 cctgtcggaa aaggggtgag tatgattacg ctgtggggtc ggaataattc aaccaacgta
     7801 aaaaagtatt gctgacgctc gaagaactgg aactacctta tgagcaaatt ctcgcgggcc
     7861 gtgagtttgg gataaatcac gatgctgatt ttctggcgat gaaccctaac gggctggtgc
     7921 cgttgttgcg tgacgacgaa agtgatctca ttctttggga atcaaacgcc attgtccgct
     7981 atctggcggc acagtacggg caaaaacgcc tgtggatcga ctcaccggca cgtcgtgcgg
     8041 aagcggaaaa atggatggac tgggcaaacc agacgctcag taatgcccat cgagggatcc
     8101 tgatgggatt agtcagaaca ccaccggaag agcgcgatca ggccgccatt gatgccagtt
     8161 gcaaagagtg cgacgccctg tttgccctgc tcgatgcgga actggcaaaa gtaaaatggt
     8221 tctctggcga cgagtttggt gtgggcgata tcgctatcgc accgttcatc tacaatttgt
     8281 ttaacgttgg cctgacctgg acaccgcgtc caaatctgca acgctggtat cagcaactca
     8341 ctgaacgccc cgcagtgcgc aaagtggtga tgattcccgt tagctaattg cgtgggctaa
     8401 ctttaagtaa ttccccactg gactcgtcgg tgagaacgta taaataaccg tcgggtccag
     8461 tgcgaacatc acgaattcgc tgccctctgt ccgttaaaat acggccatct tctgtcactt
     8521 tgtcgccgtt gacgctcatc acaatgacat ctttatcttt cagcgcgcca ataaataatt
     8581 tttgctgcca ctgggggaat ttatcgctgt tatagaaggc catgccgctc acagcgggcg
     8641 aatctttcca gtaaaaaaca ggttgctcgg tcccggcgac gatctcccct ttcgcttccg
     8701 gtatcttaaa gcctgaatag ttgattcccc aggttgccag cggccagccg tagtttttgc
     8761 ctttttgcgg gatattaatt tcatcaccac cgcgcgggcc atgttcattc agccacagtg
     8821 cattactcca cggattcatc gccattcctt gcggattacg aatgccataa gaccagatct
     8881 cggcgcgcgc accggattcc tttataaaag gattatcatc cgggatttcg ccctgatcgg
     8941 tcagacgcac cagtttgccc tgtaatttat ccagatcctg cgccgtcggg cgctgattgt
     9001 tttcgcccag agcaataaaa agataacctt taccgtcgaa taccagccgc ccgccaaaat
     9061 ggttgccggt agacagtttt ggcatctggc ggaagacggt gcggaagtcg gtcacttttg
     9121 agagatcatc acttaagcgg ccataaccca cagcagttcc ggctttgcca tcatcgccaa
     9181 cttcggaata acttaaccag atgcggcgag actgagcaaa atcaggcgct aaaaccacgt
     9241 ccagcaggcc gccctgcccg tgcgcccaaa cgtccggaac tccggaaagc ggcgcagata
     9301 atccttttcc tgcttgccag tgacgcaact cgccgccgcg cagagtgatt aacataccgt
     9361 gattatcggg taaaaaggcc agtgcccagg gatggtcgag tttgtcttgc agtacttcga
     9421 catttaccgt tgcaggagcc gcccagagag cggaagaaag acaaataagg ggcacaagga
     9481 aaaaggattg tcgatgca
//
LOCUS       DAJVSY010000160         9089 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.162, whole genome shotgun sequence.
ACCESSION   DAJVSY010000160 DAJVSY010000000
VERSION     DAJVSY010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9089
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.162"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            52..936
                     /locus_tag="OQQ19_003476"
     CDS             52..936
                     /locus_tag="OQQ19_003476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707334.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HCS1804967.1"
                     /translation="MIKKIFALPVIEQISPVLSRRKLDELDLIVVDHPQVKASFALQG
                     AHLLSWKPAGEEEVLWLSNNTPFKNGVAIRGGVPVCWPWFGPAAQQGLPAHGFARNLP
                     WTLKSHHEDADGVALTFELTQSEETKKFCPHDFTLLAHFRVGKTCEIDLESHGEFETT
                     SALHTYFNVGDIAKVSVSGLGDRFIDKVNDAKEDVLTDGIQTFPDRTDRVYLNPQDCS
                     VINDEALNRIIAVGHQHHLNVVGWNPGPALSISMGDMPDDGYKTFVCVETAYASETQK
                     VTKEKPAHLAQSIRVAKR"
     gene            complement(987..1841)
                     /gene="yeaE"
                     /locus_tag="OQQ19_003477"
     CDS             complement(987..1841)
                     /gene="yeaE"
                     /locus_tag="OQQ19_003477"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal reductase YeaE"
                     /protein_id="HCS1804968.1"
                     /translation="MQQKMIQFSGDVSLPAIGQGTWYMGEDASQRKTEVAALRAGIEL
                     GLTLIDTAEMYADGGAEKVVGEALTGLRDNVFLVSKVYPWNAGRQKAINACEASLRRL
                     NTDYLDLYLLHWSGSFAFEETVAAMEKLIAQGKIRRWGVSNLDYADMQELWQLPGGNQ
                     CATNQVLYHLGSRGIEYDLLPWCQQQQMPVMAYSPLAQAGRLRNGLLKNAVVNEIAHA
                     HNISSAQVLLARVISHQGVMAIPKAATIAHVQQNAAVLEVELSSAELTMLDKAYPAPK
                     GKTALDMV"
     gene            complement(1931..2677)
                     /gene="mipA"
                     /locus_tag="OQQ19_003478"
     CDS             complement(1931..2677)
                     /gene="mipA"
                     /locus_tag="OQQ19_003478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="scaffolding protein MipA"
                     /protein_id="HCS1804969.1"
                     /translation="MTKLKLLALGVLIATSAGVAHAEGKFSLGAGVGVVEHPYKDYDT
                     DVYPVPVINYEGDNFWFRGLGGGYYLWNDATDKLSITAYWSPLYFKAKDSGDHQMRHL
                     DDRKSTMMAGLSYAHFTQYGYLRTTLAGDTLDNSNGIVWDMAWLYRYTNGGLTVTPGI
                     GVQWNSENQNEYYYGVSRKESARSGLRGYNPNDSWSPYLELSASYNFLGDWSVYGTAR
                     YTRLSDEVTDSPMVDKSWTGLISTGITYKF"
     gene            3113..5047
                     /gene="yeaG"
                     /locus_tag="OQQ19_003479"
     CDS             3113..5047
                     /gene="yeaG"
                     /locus_tag="OQQ19_003479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase YeaG"
                     /protein_id="HCS1804970.1"
                     /translation="MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLM
                     AIGEPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEK
                     KQILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQI
                     LEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDEN
                     NQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLL
                     TATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLR
                     ISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGES
                     LKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVL
                     EQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVT
                     YADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARAN
                     NSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQKKHDDFVDRMMEKG
                     YTRKQVRLLCEWYLRVRKSS"
     gene            5160..6443
                     /locus_tag="OQQ19_003480"
     CDS             5160..6443
                     /locus_tag="OQQ19_003480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeaH/YhbH family protein"
                     /protein_id="HCS1804971.1"
                     /translation="MTWFIDRRLNGKNKSMVNRQRFLRRYKAQIKQSISEAMNKRSVT
                     DVDSGESISIPTEDISEPMFHQGRGGLRHRVHPGNDHFVQNDRIERPQGGGGGSGSGQ
                     GQASQDGEGQDEFVFQISKDEYLDLLFEDLALPNLKQNQQRQLTEYKTHRAGYTANGV
                     PANISVVRSLQNSLARRTAMTAGKRRELHALEENLAIISNSEPAQLLEEERLRKEIAE
                     LRAKIERVPFIDTFDLRYKNYEKRPDPSSQAVMFCLMDVSGSMDQSTKDMAKRFYILL
                     YLFLSRTYKNVEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSSALKLMDEVVKERYNP
                     AQWNIYAAQASDGDNWADDSPLCHEILAKKLLPVVRYYSYIEITRRAHQTLWREYEHL
                     QSTFDNFAMQHIRDQDDIYPVFRELFHKQNATAKD"
     gene            6590..8065
                     /locus_tag="OQQ19_003481"
     CDS             6590..8065
                     /locus_tag="OQQ19_003481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HCS1804972.1"
                     /translation="MIQSTRISMGLFFKYFLSLTKIDPGQNYISLPSIKSSTHIALLF
                     MVSMGTQKLKAQSFFIFSLLLTLILFCITTLYNENTNVKLIPQMNYLMVVVALFFLNA
                     VIFLFMLMKYFTNKQILPTLILSLAFLSGLIYLVETIVIIHKPINGSTLIQTKSNDVS
                     IFYIFRQLSFICLTSLALFCYGKDNILDNNKKKTGILLLALIPFLVFPLLAHNLSSYN
                     ADYSLYVVDYCPDNHTATRGINYTKILVCLWAFLLFFIIMRTRLASELWPLIALLCLA
                     SLCCNLLLLTLDEYNYTIWYISRGIEVSSKLFVVSFLIYNIFQELQLSSKLAVHDVLT
                     NIYNRRYFFNSVESLLSRPVVKDFCVMLVDINQFKRINAQWGHRVGDKVLVSIVDIIQ
                     QSIRPDDILARLEGEVFGLLFTELNSAQAKIIADRIRKNVELLTGFSNRYDVPEQMTI
                     SIGTVFSTGDTRNISLVMTEADKALREAKSEGGNKVIIHHI"
     gene            8159..8245
                     /locus_tag="OQQ19_003482"
                     /pseudo
     CDS             8159..8245
                     /locus_tag="OQQ19_003482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001459804.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
     gene            8246..>9089
                     /locus_tag="OQQ19_003483"
     CDS             8246..>9089
                     /locus_tag="OQQ19_003483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416300.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HCS1804973.1"
                     /translation="MKLHHRMLRHFIAASVIVLTSSFLIFELVASDRAMSAYLRYIVQ
                     KADSSFLYDKYQNQSIAAHVMRALAAEQSEVSPEQRRAICEAFESANNTHGLNLTAHK
                     YPGLRGTLQTASTDCDTIVEAAALLPAFDQAVEGNRHQDDYGSGLGMAEEKFHYYLDL
                     NDRYVYFYEPVNVEYFAMNNWSFLQSGSIGIDRKDIEKVFTGRTVLSSIYQDQRTKQN
                     VMSLLTPVYVAGQLKGIVLLDINKNNLRNIFYTHDRPLLWRFLNVTLTDTDSGREVAK
                     FSVPL"
BASE COUNT         2392 a         2181 c         2108 g         2408 t
ORIGIN      
        1 cttcggtcgc tctttttttt acctgataaa atgaagttaa aggactgcgt catgattaag
       61 aaaatttttg cccttccggt catcgaacaa atctcccctg tcctctcccg tcgtaaactg
      121 gatgaactgg acctcattgt ggtcgatcat ccccaggtaa aagcctcttt tgcattacag
      181 ggcgcacacc ttctctcgtg gaaacctgcg ggtgaagaag aagttctgtg gttgagcaac
      241 aacacaccgt tcaaaaatgg cgtcgctatt cgcggtggcg taccggtttg ctggccgtgg
      301 tttggtccgg cggcacaaca aggtctgcct gcgcacggtt ttgcccgcaa cctgccgtgg
      361 acgctgaaat cacatcatga agatgctgat ggcgtagcgc tgacttttga attgacgcaa
      421 agcgaagaga cgaaaaaatt ctgtccgcac gactttacgc tgttagcgca tttccgcgtg
      481 ggtaaaacct gtgaaatcga tcttgaatca catggcgaat ttgaaaccac ctctgccctg
      541 catacctact ttaacgtggg tgatatcgct aaggtaagcg tcagtgggct gggcgatcgc
      601 ttcattgata aagtgaatga cgcgaaagaa gatgtactga ccgacggtat tcagaccttc
      661 cctgaccgta ccgatcgcgt gtatctgaat ccgcaagatt gcagcgtgat taatgatgaa
      721 gcgctgaatc gtattatcgc cgtaggccac cagcatcatc tgaacgttgt aggctggaac
      781 ccgggaccgg cgctttcaat tagcatgggc gatatgccgg atgatggcta caaaacattt
      841 gtttgtgtag aaacggctta cgcttcagaa acgcaaaaag tcaccaaaga gaaacctgca
      901 catctggcgc aatccattcg cgttgcgaaa cgttaatttg cgttaatgtt gtgtgccggg
      961 tgcgatgcat ccggcacgta tcaacatcac accatatcca gcgcagtttt tccttttggt
     1021 gccggatacg ctttatccag catggttaat tccgctgacg aaagttcgac ctcaagcaca
     1081 gccgcattct gttgaacatg ggcaatcgtg gccgcttttg gaatcgccat cacaccctga
     1141 tggctgatta ccctcgccaa caatacttgt gccgagctga tattgtgagc atgtgcaatt
     1201 tcgttgacta ccgcgttttt taacagtcca ttgcgcaacc gcccggcctg ggctaatgga
     1261 ctgtaagcca tcaccggcat ctgctgttgc tggcaccagg ggagtagatc gtactcaatc
     1321 cctcgtgaac cgagatggta aagcacctga ttagtggcac actgatttcc ccccggcagc
     1381 tgccagagtt cctgcatatc agcataatca aggttagaaa cgccccagcg gcggattttt
     1441 ccctgggcga tcaatttttc catcgctgca acagtctctt caaaagcgaa actgccagac
     1501 cagtgtaata agtagagatc gagataatca gtattgagac ggcgtaaact ggcttcgcat
     1561 gcatttatcg ctttttgcct gccagcattc cacggataga ctttagagac gagaaagacg
     1621 ttatcacgca gaccggttaa tgcttcccca accacctttt cggcaccgcc atcggcatac
     1681 atttcggcgg tatcaatgag ggttaaaccg agctcaatgc ccgcgcgtag tgcagcaact
     1741 tctgttttgc gctgactggc atcttcgccc atataccatg ttccctgccc tatggctggc
     1801 agtgagacat cgccactaaa ttgaatcatt ttttgttgca ttgtttcctc ccaggtattg
     1861 caccaccgta atgcaaaaca gggcgtgacg ccctgttttt atgcacaaaa tgccctggaa
     1921 agatgcatta tcagaatttg taggtgatcc cggtagaaat caggccagtc caggatttat
     1981 ccaccatcgg gctgtcagta acttcatcag acagacgggt atagcgcgcg gtaccgtaaa
     2041 cactccagtc gccgaggaag ttgtagctgg cgctcagctc caggtaaggg ctccagctgt
     2101 cgttcgggtt atagccacgc agaccgctgc gagcggactc tttgcgcgat acgccataat
     2161 agtattcgtt ctggttttcg ctgttccact gcacaccaat acccggagtc acggtcaggc
     2221 caccgttggt gtaacgatac aaccaggcca tatcccagac aatgccgttg ctgttatcca
     2281 gggtatcgcc agccagggtg gtacgcaggt aaccgtactg ggtaaagtga gcataagaca
     2341 gaccagccat catggtgctc ttacggtcat ccaggtgacg catttggtga tcgccactgt
     2401 ctttcgcttt gaagtaaagc ggcgaccagt aagcggtaat tgaaagttta tccgttgcgt
     2461 cattccacag gtagtaacca ccacctaagc cacggaacca gaagttatcg ccttcatagt
     2521 tgattaccgg tactgggtaa acatcggtat cgtaatcttt atatgggtgc tcaacgacac
     2581 ctacgcctgc gcccaaggaa aatttacctt cagcgtgcgc tacgcctgca gacgttgcga
     2641 taagcactcc aagtgccaga agtttgagtt tggtcacaat taatcattcc ttaaacaaat
     2701 gtttagcggg cgacaaagtt tacccgtcaa tacatcgaaa cccaaccttt ttacgttttc
     2761 attttttaaa gtaactgttt aattttcctg ccgcggatga caccgcgctt acagccaaat
     2821 gaatttagcg ttactggcga gcctggtctt tacattaatt atgcaaaatt tatggatgag
     2881 ttgttgatat gccattgaaa ttaagaaagc cgtgcaggca agttttccat ttgccatcta
     2941 cgcttaattt tgaaggtgta tcaccgggca cgttgttctc atcgtcgata aaatggcatg
     3001 agagttgctg tgttttagca agagacgtcg ttcagtttac ctcttccggg aggctctact
     3061 attcatatga acggctctta acctgtgcta aaaaacgaaa ggacggcata ccatgaatat
     3121 attcgatcac tatcgccagc gatatgaagc tgccaaggac gaagagttca cactgcagga
     3181 gtttcttacc acttgtcggc aagatcgcag tgcttatgcc aacgcggctg agcggctatt
     3241 gatggctatc ggtgagcctg tcatggtcga tacagcccag gaacccagac tttctcgact
     3301 cttttctaac cgggtcattg cacgttatcc ggcgtttgaa gagttttacg gcatggaaga
     3361 cgcgattgaa cagattgtct cttatctgaa acacgcggct caggggctgg aagagaagaa
     3421 acaaatcctg tatctgctgg ggcctgtggg tgggggtaaa tcatcgcttg ctgagcgact
     3481 gaaatcatta atgcagctcg taccgattta tgtattgagc gccaacggtg agcgtagccc
     3541 ggtcaacgat catccgttct gtcttttcaa tccgcaggaa gatgcgcaga ttctggaaaa
     3601 agagtatggc attcctcgcc gttatctcgg caccatcatg tcgccgtggg cggcaaaacg
     3661 cctgcatgaa tttggtggcg atatcactaa gttccgggta gtgaaggtct ggccgtcaat
     3721 tctgcaacaa attgctatcg ccaaaacgga acccggcgat gagaacaacc aggacatctc
     3781 cgcgctggtt gggaaagtcg atattcgtaa actcgaacac tacgcgcaga atgacccgga
     3841 cgcctacggc tattccggtg cgctgtgccg cgccaatcag gggatcatgg aattcgttga
     3901 gatgtttaaa gcaccgataa aagtgctgca tcccttgtta accgccactc aggaaggtaa
     3961 ctacaacggg acggaaggta tctccgccct gccgttcaac gggattattc tcgcccactc
     4021 gaacgagtcc gaatgggtca ctttccgtaa taacaaaaac aacgaagcct tcctcgaccg
     4081 tgtttacatc gtgaaggtgc cgtattgctt gcgcatttcc gaagagatca aaatctacga
     4141 gaaattgctt aatcacagtg aattgactca cgccccatgc gcccctggca cgctggaaac
     4201 actgtcacgt ttttccattc tttcgcgcct gaaagagcca gaaaactcca gcatttattc
     4261 aaagatgcgg gtttatgatg gcgaaagtct gaaagacacc gatcccaaag ccaagtcgta
     4321 tcaggaatat cgtgactacg ccggtgtcga tgaagggatg aacggtctgt cgacgcgttt
     4381 tgcgtttaag atcctctccc gcgtgttcaa cttcgatcat gtagaagtgg cggcaaaccc
     4441 ggtccatctg ttctacgtcc tggaacagca gatcgagcgc gagcagttcc cgcaagagca
     4501 ggcagaacgc tatctggagt tcctgaaagg ttatctgatc ccgaaatatg ccgagtttat
     4561 cggcaaagag atccagacgg cctaccttga atcctattcc gaatatgggc aaaacatttt
     4621 cgaccgttat gttacctacg cggatttctg gattcaggat caggagtatc gcgatccgga
     4681 taccgggcag ctgtttgacc gcgagtctct taacgccgag ctggagaaaa tcgagaaacc
     4741 ggcggggatc agtaatccaa aagatttccg caacgagatt gttaacttcg tactgcgcgc
     4801 cagagcgaat aacagcggac gcaatccgaa ctggaccagc tatgaaaaac tgcgcacggt
     4861 tatcgagaag aaaatgttct ccaataccga ggagctgttg ccggttatct cgtttaacgc
     4921 caaaacgtca accgacgagc agaagaaaca cgacgacttt gtcgaccgta tgatggaaaa
     4981 aggctacacc cgtaaacagg tgcgtttact gtgcgaatgg tatttgcgcg tacgtaaatc
     5041 gtcttaacaa ccctggcccg gtacacatgc taccgggcct acaacgacag cgaaccgtgg
     5101 gccagagaaa tggcaacaca ggcgtagcat acagttggca aatgtagtac ggggggcata
     5161 tgacctggtt tattgaccgg cgtctgaacg gcaaaaacaa aagcatggtg aatcgccagc
     5221 gttttttacg ccgttataaa gcgcaaatta aacagtcgat ctccgaggcc atgaataagc
     5281 gttcggtgac tgacgtcgac agcggcgaat ccatatccat tcccacggaa gatattagcg
     5341 aaccgatgtt tcatcagggg cgtggcggcc tgcgccaccg cgtacatccg ggcaatgacc
     5401 atttcgtcca gaacgaccga attgaacgtc cccagggtgg cggcggaggt tccggcagtg
     5461 gtcagggcca ggccagccag gatggtgaag gtcaggatga atttgtcttt cagatttcga
     5521 aagatgagta tcttgatctg ctctttgaag atttggcctt accgaatctg aaacaaaacc
     5581 aacaacgcca gctgaccgaa tataaaacgc atcgggcggg ttataccgct aacggcgttc
     5641 cagccaatat cagcgttgtg cgttccttgc agaactcact ggcgcgacgc acagccatga
     5701 cggcgggcaa gcgacgggaa cttcatgcgc tggaagagaa tttggccatc atcagcaaca
     5761 gtgaacctgc gcaactgctg gaagaggaac gtctgcgcaa agaaattgca gaattacgtg
     5821 ccaaaattga acgcgtccct tttattgaca ccttcgattt acgttacaag aactacgaga
     5881 agcggcccga tccctccagc caagcagtga tgttttgcct gatggacgtt tccggttcaa
     5941 tggatcaatc cactaaagat atggctaagc gtttttatat tctgctgtat ctgttcctca
     6001 gcagaacgta taagaacgtg gaagtcgtat acatccgcca tcatacccaa gcgaaagaag
     6061 tcgatgaaca tgagtttttc tactcgcagg aaacaggcgg caccattgtt tccagcgccc
     6121 tgaaactgat ggatgaggta gtgaaagagc gttataaccc ggcacagtgg aatatttacg
     6181 ctgcacaagc atcggacggc gataactggg ccgatgactc tccgctttgc catgaaatcc
     6241 tggcgaaaaa attattacct gttgttcgtt attacagcta tatcgaaatt acccgtcgtg
     6301 cacatcagac attgtggcga gaatatgagc atctgcaatc tactttcgac aactttgcga
     6361 tgcagcacat ccgcgaccag gatgatattt atccggtgtt ccgtgaactg tttcataaac
     6421 aaaatgcaac agctaaagac taaaactatc agccaggtca ttatcgcctg gctgattttt
     6481 agcttactgt aaattatctc atttattaca tacattagct tacaatcgct ttaaatatga
     6541 cagcataacc tttacataat ttagttccag aaaacaatca ttcggaaaaa tgattcagtc
     6601 aacacgtatt tccatggggt tattctttaa atatttttta tcgttaacga aaattgatcc
     6661 tggtcaaaac tatatatctc tgccatcaat aaaatccagc actcacattg ctctcctttt
     6721 tatggtttct atgggtacac aaaaattaaa agctcaaagc ttttttattt tcagtttatt
     6781 gctgacatta attttatttt gcattactac cttatataac gaaaacacaa atgtaaaact
     6841 catcccacag atgaattacc tgatggttgt tgtggctttg tttttcctta acgccgtcat
     6901 ttttcttttc atgttaatga aatatttcac taacaaacaa attttaccaa cactcatttt
     6961 aagccttgca ttcttaagtg gccttatcta tttagttgaa accattgtaa ttatccataa
     7021 accaattaac ggcagtacac tgatccagac aaagtcgaat gatgtttcta ttttctatat
     7081 tttccgccaa ctcagtttta tttgtttaac ctcgctggca ctcttttgtt atggaaaaga
     7141 caacatcctt gacaacaata agaaaaaaac gggaatcctg ttgctggcgt tgattccttt
     7201 tttagttttt ccccttctgg cacacaatct gagcagttat aacgctgact attctttgta
     7261 tgtcgtcgac tactgtccgg acaaccatac tgcgaccagg ggaatcaact atacaaaaat
     7321 attggtttgt ctgtgggcat ttttactgtt ctttattatc atgcgtacac gattagccag
     7381 cgaactatgg ccgttaatag cattattatg tctggcatcg ctatgctgca acttacttct
     7441 actgactctg gatgagtata attacaccat ctggtatatc agtcgcggga ttgaagtttc
     7501 cagtaaactg tttgttgtgt cttttctgat ttataacatt tttcaggagc tgcaactctc
     7561 cagcaaactg gcagttcatg atgtgctgac caatatttat aatcggcgct actttttcaa
     7621 cagcgtagag tcattattgt cgcgacctgt tgttaaggac ttctgtgtca tgctggttga
     7681 tattaatcag ttcaaacgca tcaatgccca atggggacat cgtgtgggtg ataaagtgct
     7741 ggtttcaatt gtcgatatta tccagcaaag catccgccct gatgatattt tagcgcgact
     7801 ggagggtgag gtgtttggct tgctatttac cgaactcaat agtgcccagg caaaaatcat
     7861 tgcggatcgt atacgtaaaa atgtcgaact cctgaccggc tttagtaaca gatatgatgt
     7921 tcctgaacaa atgaccatca gtattggcac ggttttttca acgggtgaca cgcgtaatat
     7981 ctcgcttgtc atgacggaag cagataaagc cttacgcgaa gcgaaaagcg aggggggcaa
     8041 caaagtgatt attcatcata tttaagtgca aaaatattca gagccatgct ttttgcgtgg
     8101 cttttgcata caatttatta ctattacccc taaatttccc ctccccagcg gcgcagagat
     8161 gagtataatt agcgcccctg tgccaggccg caatcgaact ttatctggtt ttctcgtttc
     8221 actaactgaa ggagtgccat ttatcatgaa attgcaccat agaatgctcc ggcattttat
     8281 cgccgcaagt gtcattgtgc tgacatcttc cttccttatt tttgaacttg tcgccagcga
     8341 cagagcaatg agtgcctatc tgcgctatat cgtgcagaaa gcagactcct cctttcttta
     8401 tgataagtat cagaatcaga gtattgccgc gcatgtgatg cgcgctctcg ctgctgagca
     8461 gtcggaagtg tcgccagaac agcggcgcgc catctgcgag gcttttgagt ctgccaataa
     8521 tacccatggc ttaaacctga ctgctcataa atacccgggc ttacgcggca cactacaaac
     8581 cgcatccact gactgcgaca caattgtgga agctgcagca ctattacccg cttttgatca
     8641 ggcagtggaa ggcaaccgcc accaggatga ttacggttca ggtcttggga tggccgaaga
     8701 gaaatttcac tattatctcg atctcaatga ccgctatgtc tatttttatg agccggttaa
     8761 tgttgaatac tttgcgatga ataactggtc cttcctgcag tcaggaagta ttggtatcga
     8821 tcgcaaagat attgaaaagg tatttaccgg gcgtaccgta ttgtcgagca tttaccagga
     8881 tcagcgtact aaacagaacg tgatgagttt gctgacgccg gtgtatgttg cagggcagct
     8941 aaaagggatt gtgctgctgg atattaacaa aaacaatttg cggaatatct tttacactca
     9001 tgaccgccct ctcctctggc gttttctcaa tgtcacgcta accgataccg attcggggcg
     9061 tgaagtggcc aaattcagtg tgccacttc
//
LOCUS       DAJVSY010000161         9046 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.163, whole genome shotgun sequence.
ACCESSION   DAJVSY010000161 DAJVSY010000000
VERSION     DAJVSY010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9046)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9046)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9046
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.163"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            195..1028
                     /gene="ppsR"
                     /locus_tag="OQQ19_003484"
     CDS             195..1028
                     /gene="ppsR"
                     /locus_tag="OQQ19_003484"
                     /EC_number="2.7.11.33"
                     /EC_number="2.7.4.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="posphoenolpyruvate synthetase regulatory
                     kinase/phosphorylase PpsR"
                     /protein_id="HCS1804974.1"
                     /translation="MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVE
                     NESRARAVKDQIDAIYHQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQ
                     EMKLDPTPIAHRTHGLNPNNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSR
                     CGKTPTSLYLAMQFGIRTANYPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIR
                     EERRENSRYASLRQCRMEVAEVEALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRM
                     Y"
     gene            1184..2230
                     /gene="aroH"
                     /locus_tag="OQQ19_003485"
     CDS             1184..2230
                     /gene="aroH"
                     /locus_tag="OQQ19_003485"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroH"
                     /protein_id="HCS1804975.1"
                     /translation="MNRTDELRTARIESLVTPAELALRYPVTPGVATHVTDSRRRIEK
                     ILNGEDKRLLVIIGPCSIHDLTAAMEYATRLQSLRNQYQSRLEIVMRTYFEKPRTVVG
                     WKGLISDPDLNGSYRVNHGLELARKLLLQVNELGVPTATEFLDMVTGQFIADLISWGA
                     IGARTTESQIHREMASALSCPVGFKNGTDGNTRIAVDAIRAARASHMFLSPDKNGQMT
                     IYQTSGNPYGHIIMRGGKKPNYHADDIAAACDTLHEFDLPEHLVVDFSHGNCQKQHRR
                     QLEVCEDICQQIRNGSTAIAGIMAESFLREGTQKIVGGQPLTYGQSITDPCLGWEDTE
                     RLVEKLASAVDTRF"
     gene            2362..2553
                     /gene="hemP"
                     /locus_tag="OQQ19_003486"
     CDS             2362..2553
                     /gene="hemP"
                     /locus_tag="OQQ19_003486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemin uptake protein HemP"
                     /protein_id="HCS1804976.1"
                     /translation="MRYTDSRKLTPETDANHKTASPQPIRRITSQTLLGPDGKLIIDH
                     DGQEYLLRKTQAGKLLLTK"
     gene            complement(2557..3993)
                     /locus_tag="OQQ19_003487"
     CDS             complement(2557..3993)
                     /locus_tag="OQQ19_003487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiU family protein"
                     /protein_id="HCS1804977.1"
                     /translation="MTLSFVTRWRDELPETYTALSPTPLNNARLIWHNIELANTLSIP
                     SSLFKNGAGVWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTM
                     DWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE
                     TAEPGAMLMRVAPSHLRFGHFEHFYYRRESEKVRQLADFAIRHYWSHLEDDEDKYRLW
                     FSDVVARTASLIAQWQTVGFAHGVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSD
                     HQGRYSFDNQPAVALWNLQRLAQTLSPFVAVDALNEALDSYQQVLLTHYGQRMRQKLG
                     FMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDW
                     FARYRGRLQQDEVSDSERQQLIQSVNPALVLRNWLAQRAIEAAEKGDMMELHRLHEAL
                     RNPFSDRDDDYVSRPPDWGKRLEVSCSS"
     gene            complement(4056..4769)
                     /gene="ydiV"
                     /locus_tag="OQQ19_003488"
     CDS             complement(4056..4769)
                     /gene="ydiV"
                     /locus_tag="OQQ19_003488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-FlhDC factor"
                     /protein_id="HCS1804978.1"
                     /translation="MKIFLENLYHSDCYFLPIRDNQQVLVGVELITHFSSEDGTVRIP
                     TSRVIAQLTEEQHWQLFSEQLELLKSCQHFFIQHKLFAWLNLTPQVATLLLERDNYAG
                     ELLKYPFIELLINENYPHLNEGKDNRGLLSLSQVYPLVLGNLGAGNSTMKAVFDGLFT
                     RVMLDKSFIQQQITHRSFEPFIRAIQAQISPCCNCIIAGGIDTAEILAQITPFDFHAL
                     QGCLWPAVPINQITTLVQR"
     gene            complement(5015..5479)
                     /locus_tag="OQQ19_003489"
     CDS             complement(5015..5479)
                     /locus_tag="OQQ19_003489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HCS1804979.1"
                     /translation="MRFCLILITALFLAGCSHHKAPPPNARLSDSITVIAGLNDQLQS
                     WHGTPYRYGGMTRRGVDCSGFVVVTMRDRFDLQLPRETKQQASIGTQIDKDKLLPGDL
                     VFFKTGSGQNGLHVGIYDTNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI"
     gene            complement(5557..6306)
                     /gene="btuD"
                     /locus_tag="OQQ19_003490"
     CDS             complement(5557..6306)
                     /gene="btuD"
                     /locus_tag="OQQ19_003490"
                     /EC_number="7.6.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter ATP-binding protein
                     BtuD"
                     /protein_id="HCS1804980.1"
                     /translation="MSIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLA
                     RMAGMTSGKGRIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAMPVWHYLTLHQHDKT
                     RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVGLAAVVLQITPQANPAGQLLLLDEP
                     MNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRRE
                     EVLTPPNLAQAYGMNFRRLDIEGHRMLILTI"
     gene            complement(6306..6857)
                     /gene="btuE"
                     /locus_tag="OQQ19_003491"
     CDS             complement(6306..6857)
                     /gene="btuE"
                     /locus_tag="OQQ19_003491"
                     /EC_number="1.11.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional thioredoxin/glutathione peroxidase"
                     /protein_id="HCS1804981.1"
                     /translation="MQDSILTTVVKDIDGEVTTLEKYAGNVLLIVNVASKCGLTPQYE
                     QLENIQKAWADRGFVVLGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGE
                     GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGLVIQ
                     RFSPDMTPEDPIVMESIKLALAK"
     gene            complement(6920..7900)
                     /gene="btuC"
                     /locus_tag="OQQ19_003492"
     CDS             complement(6920..7900)
                     /gene="btuC"
                     /locus_tag="OQQ19_003492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter permease BtuC"
                     /protein_id="HCS1804982.1"
                     /translation="MLTLARQQQRQNIRWLLCLSVLMLLALLLSLCAGEQWISLGDWF
                     TPRGELFVWQIRLPRTLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLI
                     AAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALM
                     TWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVLLWICCQSRPMNMLALGE
                     ISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLL
                     PGCALAGASALLLADIVARLALAAAELLIGVVTATLGAPVFIWLLLKARR"
     gene            complement(8109..8438)
                     /locus_tag="OQQ19_003493"
     CDS             complement(8109..8438)
                     /locus_tag="OQQ19_003493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000997174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804983.1"
                     /translation="MNDDLERRVSCLESDVTEIKNNLITLTTRSESFATKSDVLEIRE
                     GLRLEMAESRQSLKSEMADLRQSLKVEMAEHRTELQKSFANQTWLLTGIVLSAMAVLV
                     AVVTVIK"
     gene            complement(8546..8908)
                     /locus_tag="OQQ19_003494"
     CDS             complement(8546..8908)
                     /locus_tag="OQQ19_003494"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1804984.1"
                     /translation="MKFHLDELKRMATLDNFARFLNESSTNEKCLSCGDTDMYMYLTN
                     IVEVGPEPKTAEECDLGTFVMLDYIGPFTGYPGYEGHDRENIHNYEFRLTCNRCGFVH
                     RYSARAFMNWVGKQGDEK"
     gene            complement(8911..>9046)
                     /locus_tag="OQQ19_003495"
     CDS             complement(8911..>9046)
                     /locus_tag="OQQ19_003495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001247217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCS1804985.1"
                     /translation="MNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVRFNPLGGA
                     "
BASE COUNT         2389 a         2396 c         2050 g         2211 t
ORIGIN      
        1 gttgcgcaaa cctgctctat tcgacaattt ccacataaac catcggtata aacgaaacca
       61 taaaaatgaa atgctgtttt cataaaaaat aaaattgaag gttcatttta taaaccagac
      121 attacctcct acgcttctgt gcgtttttaa tttatgcttt catagaatta tgtctgcatc
      181 acgggaagaa caaaatggat aatgctgttg atcgccacgt tttttatatt tctgatggta
      241 cggcaataac tgcggaggta ttaggacacg cagtaatgtc acaatttccc gtcactatca
      301 gcagcattac gctgccgttt gtcgaaaatg agagccgtgc acgggcagtg aaggatcaga
      361 ttgacgcaat ttatcaccag acaggtgtgc gcccgctggt cttctactcc atcgtgttgc
      421 cggagattcg cgccatcatc ttgcaaagtg aaggcttttg ccaggatatc gttcaggcgc
      481 tggttgcccc gctacaacaa gagatgaaac tggatccaac gccgattgct catcgtaccc
      541 atggccttaa ccctaataat ctcaataaat atgatgcgcg cattgcggcg attgattaca
      601 cccttgccca cgatgacggc atttcgttgc gcaatctgga tcaggctcag gtgatcctgc
      661 tcggtgtttc tcgctgtggt aaaaccccca ccagtctgta tctggcaatg caatttggta
      721 tccgcacggc aaactacccc tttattgccg acgatatgga taatctggtg ctacccgcgt
      781 cgctcaaacc gcttcagcat aaattgttcg gcctgactat cgacccggaa cgtctggcgg
      841 cgattcgcga ggaacgtcgg gagaacagtc gctatgcctc gcttcgtcag tgcagaatgg
      901 aagtcgcgga agtggaagcc ttgtaccgta aaaatcagat cccgtggatt aacagtacca
      961 attattcggt agaagagatt gccaccaaga tcctcgatat catgggcctt agtcgccgaa
     1021 tgtactagag aactagtgcg ctggtttgtt ttttgttatc atgctaacca cccggcgagg
     1081 tgtgacacac ctcgcacttg aaatcagctg cgattggttt atcgtgatgc gcatcacttc
     1141 ccggtagtcc tgccgtagaa gcaacaaatt tctgagactt gtaatgaaca gaactgacga
     1201 actccgtact gcgcgtattg agagcctggt aacgcccgcc gaactcgcgc tacggtatcc
     1261 cgtaacgcct ggcgtcgcca cccatgtcac cgactcccgc cgcagaattg aaaaaatact
     1321 gaatggtgaa gataagcgac tgttggtcat tattggcccc tgctcgatcc acgatctcac
     1381 cgctgcaatg gagtacgcca cccgtctgca gtcgctgcgc aaccagtacc agtcacggct
     1441 ggaaatcgta atgcgcacct attttgaaaa accacgaact gttgtcggct ggaaagggct
     1501 aatctccgat ccggatttaa acggcagcta tcgggtaaat cacggtctgg agctggcgcg
     1561 caaattactt ttacaggtaa atgagctggg tgtccctacc gcgactgagt ttctcgatat
     1621 ggtgaccggt cagtttattg ctgatttaat cagttggggc gcgattggcg ctcgtactac
     1681 cgaaagtcag atccaccgcg aaatggcttc agcactctcc tgtccggtag gttttaaaaa
     1741 tggtaccgat ggcaacacgc ggattgccgt ggatgctatc cgcgcagccc gcgccagcca
     1801 tatgttcctc tcgccagaca aaaatggtca gatgaccatc tatcagacca gcggcaaccc
     1861 gtatggccac attattatgc gtggcggcaa aaaaccgaat tatcatgccg atgatatcgc
     1921 cgcagcctgc gatacgctgc acgagtttga tttacctgaa catctggtgg tggatttcag
     1981 ccacggtaac tgccagaagc agcaccgtcg ccagttagaa gtttgtgagg atatttgtca
     2041 gcaaatccgc aatggctcta cggcgattgc tggaattatg gcggaaagtt tcctgcgcga
     2101 aggaacgcaa aaaatcgtcg gcggtcagcc gctcacttac ggtcaatcca ttaccgaccc
     2161 gtgtctgggc tgggaagata ccgaacgcct ggtcgaaaaa ctcgcctctg cggtagatac
     2221 ccgcttctga atgcgtgccc attcctgatg ggatgggcat ttctgcgcaa cttgttgtct
     2281 tctcaacaca ttactgcttg ctctggcctg ccataatatt gataataaga atcattgtta
     2341 tatcaattat tattaatttt tatgcgttat acggatagca gaaaactcac gcctgaaacg
     2401 gatgccaatc acaagaccgc ttccccgcag cccatccggc gaattaccag ccagacactg
     2461 ttaggtccgg atggcaaact gattatcgat catgacgggc aagaatatct gctccgtaaa
     2521 actcaggctg gcaagctgct gttaactaag tagcctttaa ctcgagcagc tgacttccag
     2581 ccgtttaccc cagtcaggtg gacgactgac atagtcatca tctctgtcgc tgaaaggatt
     2641 tcgcaacgcc tcatgcaggc ggtgcaattc catcatatca cccttttctg ccgcttcaat
     2701 cgcccgttgc gccaaccagt tgcgcaatac cagagctggg ttaacgcttt gtatcagttg
     2761 ctgacgctca ctatcgctaa cctcgtcttg ttgcaaacgc ccccgataac gggcaaacca
     2821 gtcatcaaat gccgcacgat caataaactc atcacgtagc ggtgacgccg cgctgtgctg
     2881 ctcggtcaga ctcagcatgc ggaatgtgcg ggtataatcg ctgcgctctc gcgccatcag
     2941 actgaataat tcattcagta gcgcgttatc ctctttttgc tccgtcatga agcccagttt
     3001 ctgccgcatc cgttgtccat aatgcgtcaa caaaacctgc tgatagctgt ccagggcctc
     3061 attcagggca tctacggcaa caaatggtga caatgtctgc gccagacgct gtaaattcca
     3121 caacgcgaca gcaggttgat tatcaaagct ataacgccct tgatgatccg agtgattaca
     3181 aataaaaccg ggttcgtaat catcaagaaa accaaacggc ccgtaatcaa gcgtcagtcc
     3241 cagcagcgac atgttgtcgg tattcatcac cccatgtgca aagccgaccg tctgccattg
     3301 ggcaattaac gacgcggtac gtgcgacaac atcgctaaac cagagacggt atttgtcctc
     3361 atcatcttca agatgtgacc agtaatgacg aatagcaaag tcagctaact gacgaacctt
     3421 ttccgactcg cggcggtagt aaaaatgttc gaaatgacca aagcgcagat gacttggtgc
     3481 cacacgcatc agcatcgcgc ctggctccgc cgtttcccga tacactggcg aatcgctggt
     3541 gacgatactt aacgcgcggg tcgtcggaat gcccagataa tgcatcgcct cactggcgag
     3601 actttctcgt atcgtcgaac gtaaaaccgc ccgtccatca cccattcgcg aataaggcgt
     3661 caggccagca cctttcagat gccagtccat tgtagtgcca tcagcaagca gttgttcgcc
     3721 gagtaaaatg ccgcgcccat cacccagttg gcccgcccag acgccgaact gatgaccact
     3781 gtaaacctgc gccagtggtg acataccagg cagtagggct tcgccgcccc agacacctgc
     3841 gccattttta aacagcgacg atggaatact cagcgtgtta gccagttcga tattatgcca
     3901 aatcagccgg gcattattta aaggcgtagg ggaaagtgct gtataggttt ctggcaattc
     3961 atcgcgccag cgggtaacaa aagacagggt catagatcct cctgtttgat agtgtagacg
     4021 gttactctcg tcttaaacac cagcaaacag aagggttatc gctgaaccaa cgtcgttatc
     4081 tgatttatgg gaacggcagg ccacaggcat ccctggagag catggaaatc gaagggggta
     4141 atctgtgcca atatttctgc cgtatcaatg cctcccgcaa tgatgcaatt gcaacaaggg
     4201 gaaatttgcg cctggatcgc acgaataaac ggttcgaagg agcggtgcgt gatttgttgc
     4261 tgaataaaac ttttatccag catgacgcgg gtgaaaagac catcaaaaac cgctttcatt
     4321 gtgctattgc ctgctcccaa attacctaac acaaggggat acacttgcga taaggataaa
     4381 agaccgcgat tatcttttcc ttcattgaga tgcgggtaat tctcattaat caacagttca
     4441 ataaacggat attttaatag ttcgcctgcg taattatccc tctctaataa taatgtagcc
     4501 acttgtggcg ttaaattaag ccaggcaaag agtttatgtt gaataaaaaa atgttggcat
     4561 gattttagta attccaactg ctctgaaaat aattgccaat gttgctcctc ggtaagttgc
     4621 gctataaccc gactcgtcgg gatacgcacc gtgccatctt cactggagaa atgggtaatt
     4681 aactcaacgc cgacaaggac ttgctggtta tctcttatcg gcaggaaata gcaatcagaa
     4741 tgataaagat tctccaaaaa aatcttcatg gtaaccgtcc ctctcgaagg atgtttttca
     4801 gtatccggct aaaagggatg aggccataag acataacaat tacagaagga gtaactttca
     4861 tttgttccat gttaaccact ttttcagggg tcttttttta gattatcctg attataaacg
     4921 aataatccat ttacggaatt tttgtctgca aaatactact gtattcagga gtaaatggac
     4981 ggcgatgtat catcgccgtc catttttcga catactagat tcgtctcgcc tgccagaaat
     5041 ttttctgcca atagacatta tcaagtgagg aacgcatcac tcccttgctg gtagaggcgt
     5101 ggataaattg gttgttggta tcgtaaatac ctacatgcaa accattttgt ccggaccccg
     5161 ttttgaaaaa gaccaggtca cctggcagca acttgtcttt atcaatttgc gtgccaatag
     5221 aggcttgttg tttggtttca cggggcagct gcaaatcgaa acgatcgcgc atcgtcacaa
     5281 ccacaaatcc cgaacagtcc acaccgcgcc gcgtcatgcc accataacga tacggcgtgc
     5341 catgccagct ttgtagctgg tcgttcaaac cggcaataac ggtaatcgaa tcagaaagtc
     5401 tggcatttgg cggcggtgct ttatggtggc tacacccggc cagaaacagt gctgtgatca
     5461 aaataaggca gaaacgcatt ccgtacggtt cctctgtttt ttattcttgc attaatttag
     5521 cgtcgtaatt acccgatttt caagatacta atgaaatcag atggtcaaaa tcagcattct
     5581 gtgaccttcg atatccagac ggcgaaaatt catcccatag gcctgcgcca gatttggcgg
     5641 cgtgagcacc tcttctctgc gtccactggc cagcattttt ccacctttta gcaaccacgc
     5701 ccgatgcgca tgacgcaacg tgtggttgag atcgtgactg ctcatcacaa tcgccagtcc
     5761 ttgctgacac agcgcgctca gaattttgtc taacgcactt tgttgcgcaa catcaagact
     5821 gttcatcggc tcatcaagaa gcagcaattg gcctgcggga ttggcttgtg gtgtgatttg
     5881 caacaccacc gcagcaagac ctacgcgttg ccattcaccg ccggaaagtt gattggtgct
     5941 acgaccgagt ttgtcatcaa gagccagcgc ccctgcgaca tcattcagta gttcggtacg
     6001 cgttttatcg tgctgatgca gtgtcaggta gtgccagacc ggcattgcaa acggcggcgt
     6061 ctgctgttgt gaaagatagg cgcgatgcag cgcgagtttt gttgcggacc atgcttccag
     6121 gggttgcccc gcgaactgaa ttcttccctt accgctggtc attccggcca ttcgtgcaag
     6181 caaggtactc ttacccgcgc cattcggccc caccaggtgc aggatctccc cagcccgaac
     6241 ctcgccagaa agtggcccta ggcgggtaga ttccgcaaca tcctgtaact gcatcacaat
     6301 agacattatt ttgccaacgc cagtttaatg ctttccatca caatggggtc ttccggcgtc
     6361 atatccgggg aaaaacgctg gatgaccaat ccgtccctgc caactaaaaa tttctcaaaa
     6421 ttccataaaa tatcatcagg gtacagcggt gcacgacctt tgctgaccat acgggcatag
     6481 aatccgctct cttccggcgc gactgcggtc ggcgctgcgg caatcaattt ttgatacagc
     6541 ggatggcgtc cttcgccgtt aacttcaatc ttactgaaca tcgggaacgt caccccccat
     6601 gtggtggtac agtaagtttt aatctcttca tcgctgcccg gttcttgttc cagaaactgg
     6661 ttgcacggga atcccagcac cacaaaacct cgatcggccc aggctttctg aatattctcc
     6721 aactgctcat attgcggcgt taagccacac tttgaggcga cattgacaat caacagcaca
     6781 ttaccggcgt acttctccag cgtggtcact tcaccgtcga tatctttcac tacggtcgtc
     6841 agaatggaat cttgcatcgt ttctcctggg tgtggtcagt aaaaatctta gcttttaatc
     6901 atagaccgtc tttttgcggc taacgtcttg cttttaacaa taaccagata aacaccggcg
     6961 cacccaacgt tgcggtgacc acgccaataa gcagctctgc ggcagctaat gccaggcgcg
     7021 ctacaatatc ggccagcagc aatgcgctcg cccctgccag cgcgcagccg ggaagtaata
     7081 cgcgatgatc ggttaaacca cacaaccgaa gaatatgtgg gatcaccaga ccaataaagc
     7141 cgatagcacc cgccagcgcc acactgacgc caaccatcca gccggtcgcg gccaccagca
     7201 cattgcgcca gaaccacagg ggtaaaccca gttgccgcgc cgagatctcg ccaagtgcta
     7261 acatattcat cggcctggac tgacaacaga tccacaacaa cacggggatc aatgccagca
     7321 tcagccagct ttgccgccag tctacgccgc caaaaccgcc catcatccag tacatcagct
     7381 gacgtaaatc aacagaggtg gaaaagtaga tagcccacgt cattagtgcg ctacagataa
     7441 tccctaatgc aacgccagcc agcaataacc gactggtcga aagatgacga cgggcgaaac
     7501 gtaagagtat taaagtaatg ataagcgcgc cagcaatcgc acacagccct agcgcccagt
     7561 tggggagttg cccttgccca agcaataccg cggcgataag ccccacgcct gcgccgttag
     7621 agacgccaag tagtccaggt tctgccagag gattttcaaa caacgcctgc attacagcgc
     7681 cggatatagc cagcgccgca ccaaccaaca atacagccag cgtacgtggc aggcgaattt
     7741 gccagacgaa cagttcgcca cgaggagtaa accagtcacc tagcgagatc cattgttcac
     7801 cggcgcaaag gcttaaaaga agcgccagca gcatcaaaac tgacaggcat aataaccagc
     7861 gaatattttg tcgctgttgt tggcgggcaa gtgtcagcat ggtatccgtt ctgctgaagt
     7921 gtcatggcgt tgattttacg gtgactcttc gacagtgaaa agaaaaaagg ccgcagagcg
     7981 gccataaaca caagtaaaaa tcaacaagtt agataattat caaagactta cagacacaca
     8041 aaaacacagc caaccacaac aaataacagg gatgtggtca ctttgtggat catatcgccg
     8101 ccataaattt acttaataac agtaaccaca gccacaagca cggccatcgc agacaggaca
     8161 atacctgtga gtaaccaagt ctgatttgca aatgatttct gaagttcagt acgatgctca
     8221 gccatctcaa ctttcagaga ctggcgtaaa tcagccatct cagacttcag ggattggcgc
     8281 gattctgcca tctcaagcct caacccttcg cgaatctcca gtacatcaga tttggtagca
     8341 aaggattcgc ttcttgtggt gagagtaatc aggttgtttt tgatttcagt cacatcactt
     8401 tccaggcaac tgacccgccg ttcaaggtcg tcattcatgc catcacctcc atcattacca
     8461 cttcctgtta cttggttgtt ggatacatta taggcattct ctttcttttt tctgaaccgc
     8521 gaaatatgtg caacattctc tgccatcact tctcatcacc ctgcttgcct acccagttca
     8581 taaaggcccg ggccgagtaa cgatgaacaa acccacatct gttacaggta agtcggaatt
     8641 catagttatg gatattttcc cgatcatgtc cctcatatcc cggataccca gtaaatggac
     8701 cgatgtaatc aagcataaca aaagtgccta aatcacactc ctcagcagtt ttcggctcag
     8761 gccccacctc aacaatattc gtcaaataca tgtacatatc cgtatcgcca cacgacaaac
     8821 atttttcatt cgtagacgac tcattgagaa aacgcgcaaa attatcgagc gttgccattc
     8881 ttttaagttc atctaaatga aacttcactc ttaagcacct cctagtggat taaacctcac
     8941 cgcatcctgc aggtaatccg gcgcaagatg ggcataaatc atcgttgtct gaatctttgc
     9001 gtgccccaga attttctgga gcgtcagaat attgccgccg ttcatc
//
LOCUS       DAJVSY010000162         8849 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.164, whole genome shotgun sequence.
ACCESSION   DAJVSY010000162 DAJVSY010000000
VERSION     DAJVSY010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8849)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8849)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8849
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.164"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..1005
                     /locus_tag="OQQ19_003496"
     CDS             <1..1005
                     /locus_tag="OQQ19_003496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312656.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3748 domain-containing protein"
                     /protein_id="HCS1804986.1"
                     /translation="PKSEKYVFIHGPENPDETWYYDFHHRRGVIAEGGKVSNLDAMDI
                     TAPYTPGALRGGSHVHVFSPNGERVSFTYNDHVMHELDPALDLRNVGVAAPFGPVNVQ
                     KQHPREYSGSHWCVLVSKTTPTPQPGSDEINRAYEEGWVGNHALAFIGDTLSPKGEKV
                     PELFIVELPQDEAGWKAAGDAPLSGTETTLPAPPRGVVQRRLTFTHHRAYPGLVNVPR
                     HWVRCNPQGTQIAFLMRDDNGIVQLWLISPQGGEPRQLTHNKTDIQSAFNWHPSGEWL
                     GFVLDNRIACAHAQSGEVEYLTESHANPPSADAVVFSPDGQWLAWMEGGQLWITETDR
                     "
     gene            complement(1007..1339)
                     /locus_tag="OQQ19_003497"
     CDS             complement(1007..1339)
                     /locus_tag="OQQ19_003497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418143.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HCS1804987.1"
                     /translation="MIRNVLLAFMICSGMTLLGGCSSVMSHTGGKEGTYPGTRASATM
                     IGDDETNWGTKSLAILDMPFTAVMDTLLLPWDVFRKDSSVRSHVEKSEANAQATNAVI
                     PPARMPDN"
     misc_feature    1579..1651
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01832"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ROSE (Repression Of Heat Shock gene Expression)
                     occurs in the 5'-region of heat shock genes and acts as an
                     RNA thermometer to modulate expression; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF01832"
     gene            1645..2058
                     /gene="ibpA"
                     /locus_tag="OQQ19_003498"
     CDS             1645..2058
                     /gene="ibpA"
                     /locus_tag="OQQ19_003498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006687722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock chaperone IbpA"
                     /protein_id="HCS1804988.1"
                     /translation="MRNFDLSPLYRSAIGFDRLFNHLENNQSQSNGGYPPYNVELVDE
                     NHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLA
                     ENIHVRGANLVNGLLYIDLERVIPEAKKPRRIEIN"
     gene            2170..2598
                     /gene="ibpB"
                     /locus_tag="OQQ19_003499"
     CDS             2170..2598
                     /gene="ibpB"
                     /locus_tag="OQQ19_003499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709512.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock chaperone IbpB"
                     /protein_id="HCS1804989.1"
                     /translation="MRNFDLSPLMRQWIGFDKLANALQNAGESQSFPPYNIEKSDDNH
                     YRITLALAGFRQEDLEIQLEGTRLSVKGTPEQPKEEKKWLHQGLMNQPFSLSFTLAEN
                     MEVSGATFVNGLLHIDLIRNEPEPIAAQRIAISERPALNS"
     gene            2794..4455
                     /locus_tag="OQQ19_003500"
     CDS             2794..4455
                     /locus_tag="OQQ19_003500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HCS1804990.1"
                     /translation="MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVG
                     HFVSQAGMTLSSDMLHVIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVI
                     IGGLVTAILHKLFDIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSY
                     AMAYPFGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHD
                     LAIKDVPILNGDKIICSRLKREETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQ
                     EVDTSLSTKGTDLRVERVVVTNENVLGKRIRDLHFKERYDVVISRLNRAGVELVASGD
                     ISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVP
                     GFPAALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKS
                     GGDFVNTLVNGEGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPP
                     ALAFANNLHPTSGAPALSYATVYPLVMFLRIITPQLLAVLFWSIG"
     gene            complement(4452..5168)
                     /locus_tag="OQQ19_003501"
     CDS             complement(4452..5168)
                     /locus_tag="OQQ19_003501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1804991.1"
                     /translation="MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRK
                     AIDLLVAWGLVVRRHGSGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEIMP
                     APPAIASQLRIQINEQIYFSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEY
                     IEQECGILIGGNYESLTPVLADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMF
                     RNASEYQVEYHLRRLHPEKS"
     gene            5463..7079
                     /locus_tag="OQQ19_003502"
     CDS             5463..7079
                     /locus_tag="OQQ19_003502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312650.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HCS1804992.1"
                     /translation="MLSQIQRFGGAMFTPVLLFPFAGIVVGLAILLQNPMFVGESLTD
                     PNSLFAQIVHIIEEGGWTVFRNMPLIFAVGLPIGLAKQAQGRACLAVMVSFLTWNYFI
                     NAMGMIWGSYFGVDFTQDAVAGSGLTMMAGIKTLDTSIIGAIIISGIVTALHNRLFDK
                     KLPVFLGIFQGTSYVVIIAFLVMIPCAWLTLLGWPKVQMGIESLQAFLRSAGALGGWV
                     YTFLERILIPTGLHHFIYGQFIFGPAAVEGGIQMYWAQHLQEFSLSAEPLKSLFPEGG
                     FALHGNSKIFGAVGISLAMYFTAAPENRVKVAGLLIPATLTAMLVGITEPLEFTFLFI
                     SPLLFAVHAVLAASMSTVMYLFGVVGNMGGGLIDQVLPQNWIPMFSNHADMMLTQIAI
                     GLCFTLLYFVVFRTLILQFNMCTPGREDAEVKLYSKAEYKASRGQTTAAEPKKELDQA
                     AGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVII
                     GLHVSQLREQLDSLINSHQSAENVAITEAV"
     gene            7079..8402
                     /locus_tag="OQQ19_003503"
                     /pseudo
     CDS             7079..8402
                     /locus_tag="OQQ19_003503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312649.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-alpha-glucosidase"
     gene            complement(8533..8849)
                     /gene="tnpA"
                     /locus_tag="OQQ19_003504"
                     /pseudo
     CDS             complement(8533..8849)
                     /gene="tnpA"
                     /locus_tag="OQQ19_003504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313209.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
BASE COUNT         2041 a         2216 c         2337 g         2255 t
ORIGIN      
        1 ccgaagtcag agaaatatgt tttcatccat ggcccggaaa atcctgatga aacatggtat
       61 tacgatttcc atcatcgacg cggagtcatt gctgaaggcg gcaaggtgag caatctcgat
      121 gcaatggata ttaccgcgcc gtatacgcca ggagcgctgc gcggcggcag ccatgtgcat
      181 gtctttagcc cgaacggtga aagggtgagc tttacctata acgaccatgt aatgcatgaa
      241 ctcgatccgg cgctggattt gcgaaacgtc ggtgttgctg cgccgtttgg cccggtcaac
      301 gtacaaaagc agcatccgcg tgaatacagc ggtagccact ggtgcgtgct ggtgagtaaa
      361 accacgccca cgccgcagcc tggcagcgat gaaatcaatc gtgcttatga agaaggatgg
      421 gtaggaaatc acgcgctggc gtttattggc gacacacttt cgccaaaggg cgagaaagtg
      481 ccggagctgt ttatcgttga gttaccgcaa gatgaagctg gctggaaagc ggcaggtgat
      541 gcgccgttaa gtggaacgga aaccaccctg cccgcgccac cgcgcggcgt cgtgcagcga
      601 cgtttaacct ttacccacca tcgggcttat ccggggttag tcaacgtccc gcgccactgg
      661 gtgcgctgta atccgcaggg tacgcaaatc gcgtttttaa tgcgtgatga taacggcatt
      721 gtgcaactgt ggcttatctc gccacagggc ggcgagccgc gccagttaac ccataacaaa
      781 acggatattc agtctgcatt taactggcat ccgtcaggag aatggttggg ctttgtgctg
      841 gataatcgaa ttgcttgtgc ccatgcgcaa agtggcgagg ttgagtattt aaccgaaagc
      901 cacgccaatc caccttctgc ggacgccgtg gtcttctcgc cggatggtca atggctggcg
      961 tggatggaag gcggccagct gtggatcacc gaaactgatc gctaaatcag ttatcaggca
     1021 ttctggccgg tggaataacc gcattggtgg cttgcgcgtt ggcttcgctt ttttcaacgt
     1081 gtgagcgcac cgagctgtct ttgcggaaca catcccacgg cagtaaaagc gtgtccatca
     1141 cagcggtaaa cggcatatcg agaatcgcca gcgacttagt gccccagttg gtttcatcgt
     1201 cgccaatcat ggttgcgctg gcgcgggtgc cgggatacgt tccttctttc cctccggtat
     1261 gggacatcac gctggagcat cctccgagta atgtcattcc gctgcatatc atgaacgcta
     1321 acaacacatt tcttatcata ataaattcat ctgttgatcg tgggtgttgg cctgatgagt
     1381 tatagcgatc ccttgctgaa aataacatca tcattacgtc gcactgtggc ggctatcgca
     1441 ctttaacgtt tcgtgctgcc ccctcagtct atgcaataga ccataaactg caaaaaaaag
     1501 tccgctgata aggcttgaaa agttcatttc cagacccatt tttacatcgt agccgatgag
     1561 gacgcgcctg atgggtgttc tggctacctg acctgtccat tgtggaaggt attacattct
     1621 cgctgatttc aggagctatt gattatgcgt aactttgatt tatccccgct ttaccgttct
     1681 gctattggat ttgaccgttt gtttaaccac ttagaaaaca accagagcca gagtaatggc
     1741 ggctaccctc cgtataacgt tgaactggta gacgaaaacc attaccgcat tgctatcgct
     1801 gtggctggtt ttgctgagag cgaactggaa attaccgccc aggataatct gctggtggtg
     1861 aaaggtgctc acgccgacga acaaaaagag cgcacctatc tgtaccaggg catcgctgaa
     1921 cgcaactttg aacgcaaatt ccagttagct gagaacattc atgttcgtgg ggctaacctg
     1981 gtaaatggtt tgctgtatat cgatctcgaa cgcgtgattc cggaagcgaa aaaaccgcgc
     2041 cgtatcgaaa tcaactaatt ccctaaggcc gcctgacgcg gcctgacatc tccatgctcg
     2101 ccgtcaggga gcatatgcga atcttcggat ttgcaggtac ttactcgctt cttagaagga
     2161 gaaatgacta tgcgtaactt cgatttatcc ccactgatgc gtcaatggat cggttttgac
     2221 aaactggcca acgcactgca aaacgccggt gaaagccaga gcttcccgcc gtacaacatt
     2281 gagaaaagcg acgataacca ctaccgcatt acccttgcgc tggcaggttt ccgtcaggaa
     2341 gatttagaga ttcaactgga aggtacgcgc ctgagcgtaa aaggcacgcc ggagcagcca
     2401 aaagaagaga aaaaatggct gcatcaaggg cttatgaatc agccatttag cctgagcttt
     2461 acgctggctg aaaatatgga agtctctggc gcaaccttcg taaacggttt actgcatatt
     2521 gatttaattc gtaatgagcc tgaacccatc gcagcgcagc gtatcgctat cagcgaacgt
     2581 cccgcgttaa atagctaact agctattctc tttgccccgc cattctggtg gggctttttt
     2641 tgtctttctt cttcaacaat gcgttaaatt tcgactgttt aagatatttc ggcacgttct
     2701 ttcccgtgat aatgtgcgct ataaggcaaa tctgcttcac cgattcagcc ataatccgta
     2761 gcaattaaaa tgttatctca agagaaatgg acgatgagtg atatagcatt aacggtcagt
     2821 attctggctt tggtggcagt cgtcggtttg tttatcggca acgtcaaatt tcgcggcata
     2881 ggattaggta ttggcggcgt gctgtttggt gggatcatcg tcggccattt tgtttctcag
     2941 gcggggatga cattaagtag cgatatgctg catgttattc aggaatttgg cctgatcctg
     3001 ttcgtttata ccatcgggat tcaagtaggg ccgggcttct ttgcctcatt gcgcgtctcc
     3061 ggattacgcc tcaacctgtt tgctgttctg atcgtcatca tcggtggtct ggttaccgcc
     3121 atcctgcata aactgtttga tattccactg ccggtagtgc tggggatttt ctccggtgcg
     3181 gttaccaata cgccagcgct gggggcaggg cagcagatct tgcgcgacct gggtacacca
     3241 atggaaatgg tcgatcagat ggggatgagt tacgcgatgg cgtatccatt cggcatttgc
     3301 gggattttgt tcaccatgtg gatgttgcgg gttattttcc gcgtcaatgt cgagacagaa
     3361 gctcagcagc acgagtcttc acgcaccaat ggcggcgcgc tgatcaagac tatcaatatt
     3421 cgcgttgaga accctaacct gcatgattta gctattaaag atgtaccgat tctcaacggc
     3481 gacaaaatta tctgctcgcg tctgaaacgc gaagaaaccc taaaagttcc ttcgccagat
     3541 accattatcc aactgggcga tttgctgcat ctggtggggc agccagcgga tttacataat
     3601 gcgcaactgg tgattggtca ggaggtcgat acttcgctgt ccacgaaagg cactgatttg
     3661 cgcgtcgagc gtgtggtggt caccaatgaa aacgtgctcg gaaaacgtat tcgcgacctg
     3721 cactttaaag aacgctatga cgttgttatc tcgcgcctga accgtgccgg ggtcgaactg
     3781 gtcgccagtg gcgatatcag cctgcagttc ggcgatatcc tcaatctggt ggggcgtccg
     3841 tccgcaattg atgccgttgc caatgtgctg gggaatgcgc agcaaaaact gcaacaggtt
     3901 cagatgctgc cagtgtttat tggcatcggg cttggcgtat tgttaggttc tattcccgtc
     3961 tttgtgcctg ggttcccggc cgcgttgaaa ctggggctgg cgggcggtcc gctgattatg
     4021 gcgttgatcc tcgggcgtat cggcagtatc ggcaagctgt actggtttat gccgccaagt
     4081 gccaacctcg cgctgcggga gctggggatc gtgctgttcc tctcggtcgt tggtctgaaa
     4141 tctggtgggg attttgtgaa taccctggtc aatggcgaag ggctaagctg gattggttat
     4201 ggtgccctga tcaccgccgt tccgctgatt actgttggca ttctggcgcg gatgttagcc
     4261 aaaatgaatt acctgaccat gtgcgggatg ctggcaggtt ccatgaccga tcctccggcg
     4321 ctggcgtttg ctaataatct tcatccaacc agtggtgcgc cggcgctctc ttacgccact
     4381 gtctatccgt tagtgatgtt tctgcgaatt atcacccccc aattactggc ggtgctcttc
     4441 tggagtatcg gttaactctt ttccgggtgg agtcgccgta aatggtactc cacctggtat
     4501 tcgctggcat ttctgaacat cactgaataa ttcaaaaact ccccgctctc gctatatgac
     4561 aacgaggtga tccgcagcag tggcgtgtgt tccgctacct tcatttgccg cgccagcagt
     4621 ctatcggcga gcaccggcgt caggctttca taattaccgc caatcaaaat cccacactct
     4681 tgttcaatat attcaaactt cgacccttcc agatgttgca gcgaaagatt acggaacagt
     4741 ttaaccggca tatagctgtc ttccagcatc agcggtttcc cttccacaaa acgaacgcga
     4801 cgggagaagt agatctgctc gttgatttga atccgtaact ggctggcaat ggccggaggc
     4861 gcaggcatga tttcaaaaat cagcacctgg ctggtgaccg tttttccctg ccgttttaac
     4921 acctccacca gtccggtcag gctggcggtt tgatgcagca catctttgcg caccaggtaa
     4981 gtgccgctgc cgtggcggcg gaccaccagc ccccacgcta ccagcaggtc aatcgcttta
     5041 cggatggtca tccgggatac tgcaaattct tccgccaact ttttttcacc gggaagaagg
     5101 ctgtttagcg tgaaatccgc ggaattaagt cgaattctta accgctccgc aatgcttttg
     5161 tagatcatct ctagatctct tttttgcctg caagcccggg taatgcgccc acaagttctg
     5221 cttaatcgat tgaaaaaaca tcttttttta aagatgtgtt cgatgctgtg taccagtgct
     5281 cacagatgtc tactttttcg cgaaaacgta gatctctacc gcccaacgaa aagcatgaaa
     5341 gcgatcacga atcccattgg gtcgtcatgt tctgccgatc gcatcttcct atcctcgctc
     5401 caggcctgcc gcataaccaa tcaggcttcc tacttacaga attgagaaaa gaggatgtgg
     5461 aaatgctcag tcaaattcaa cgctttggcg gcgcgatgtt cacgccagtg ctgctgtttc
     5521 ccttcgccgg gattgtggtg ggtcttgcca tcttgctgca aaacccgatg tttgtcgggg
     5581 aatcactgac cgatccgaac agtttattcg cgcaaatcgt acacattatt gaagagggcg
     5641 gttggacggt attccgtaat atgccgctga tttttgctgt cggtttaccc attggccttg
     5701 ctaagcaagc gcaggggcgt gcttgtctgg cggtgatggt gagtttcctg acctggaact
     5761 atttcatcaa cgcgatggga atgatctggg gaagctactt cggcgtcgat ttcactcagg
     5821 acgcggtggc aggtagcggt ctgacaatga tggccgggat taaaaccctc gataccagca
     5881 ttatcggcgc aattatcatt tccggcattg tgacggcgct gcataaccgt ctgttcgata
     5941 aaaaactgcc ggtttttctc ggcattttcc aggggacgtc ttatgtggtg attatcgcct
     6001 tcctggtgat gatcccctgt gcctggctga cgttgctcgg ttggccaaaa gtacaaatgg
     6061 ggattgaatc tctgcaagcg ttcctgcgtt cggcgggtgc gcttgggggg tgggtttaca
     6121 ccttcctcga acgtattctg atcccaaccg gtttacacca cttcatctac ggacagttta
     6181 tctttggtcc ggcagctgtt gaaggcggca ttcagatgta ctgggcgcag catctgcaag
     6241 agttcagtct gagcgccgag ccgctgaaat cgttgttccc ggaaggcggt tttgccctgc
     6301 acggtaactc aaaaatcttt ggtgccgtgg gcatttcttt agcgatgtac ttcactgccg
     6361 caccggaaaa tcgggtaaaa gtggcgggct tgctgattcc cgcaacctta accgccatgc
     6421 tggtgggaat taccgaaccg ctggaattta ccttcctgtt catttcaccg ttgctgtttg
     6481 cggtacacgc cgtgctggcg gcctcaatgt cgaccgtgat gtatctcttt ggtgtggtgg
     6541 gcaacatggg cggaggtctg attgaccagg ttttaccgca aaactggatc ccgatgttca
     6601 gcaaccacgc ggatatgatg ctgacccaaa tcgccattgg gttgtgcttt accctgctgt
     6661 acttcgtggt tttccgcaca ctgattctgc aattcaacat gtgcacgccg ggacgtgaag
     6721 atgcggaagt gaaactctac tcaaaagccg aatacaaagc ctcgcgaggc caaaccaccg
     6781 ctgcagagcc aaaaaaagag ctggatcagg ctgccggtat cctgcaagcc ctgggcgggg
     6841 tcggcaatat ctccagcatt aacaattgcg cgacgcgttt acgtattgca ctgcatgaca
     6901 tgtcacaaac gctggatgac gaagtcttta aaaagctggg agcgcacggc gtcttccgta
     6961 gtggcgatgc cattcaggtg atcattggtc tgcatgtatc ccagctgcgt gaacagctcg
     7021 atagcttaat taattctcat caatcagcag aaaatgttgc cattacggag gcagtataat
     7081 gaccaaattc tcagtggttg tcgcaggcgg tggaagcacc tttacgccag gcatcgtgtt
     7141 gatgctcctg gcgaatcagg accgtttccc gcttcgtgca ctgaaatttt atgataacga
     7201 tggtgcgcgg caggaagtga ttgccgaagc ctgtaaagtc atccttaaag agaaagcgcc
     7261 ggacattgcg tttagttaca ccaccgatcc tgaagtggca ttcagcgacg ttgattttgt
     7321 catggcgcac atccgcgtcg gcaaataccc gatgcgcgaa ctggatgaaa aaatcccgct
     7381 gcgccacggc gttgttggtc aggaaacttg cggacccggc ggaatagcgt acggcatgcg
     7441 ttccattggc ggcgtcctgg aactggtgga ttatatggaa aaatattcac caaatgcctg
     7501 gatgctcaac tactccaacc cggcagcaat tgtcgcagaa gccacgcgtc gtctgcgccc
     7561 gaatgcgaaa atcctcaaca tctgtgacat gccaatcggt attgaaagcc ggatggcgca
     7621 aattgttggg ctgcaagatc gcaaacagat gcgcgtgcgc tactacggcc tgaaccactt
     7681 tggctggtgg acatcaattg aagatttgca gggcaacgac ctgatgcccc agctgcggca
     7741 atatgtctct aagcacggtt atgttccacc gcagcaagat acacatactg aagcgagctg
     7801 gaacgacacc tatgcaaaag cgcgggatgt ccaggcactg gacccggata cattgccgaa
     7861 cacctatctg aaatattatc tcttcccgga ttatgttgtt cagcattcca accctgaaca
     7921 tacccgcgcg aatgaggtga atggaacatc gcgagaaaca ggttttcgat gcttgccgcg
     7981 ccattacagc ggcaggaaat tcagcggcgg ccaagctgga gattgacgaa catgcgtcat
     8041 acatcgtcga tctggcggcg gcaattgcct tcaacactca ggagcggatg ttgctgattg
     8101 tgcctaacaa cggggcaatc cataactttg atgatgaagc gatggtcgag atcccgtgtc
     8161 tggtcgggca caacggacca gaaccactgg tggtcggcga tatcccgcag tttcagaaag
     8221 ggttaatgag tcagcaagtg gcggtggaaa aactggtcgt ggacgcctgg gaacagcgtt
     8281 catatcagca cctgtggcag gcgattacgt tatcgaaaac ggtaccgagc gcctcggtcg
     8341 ccaaagctat tctggatgag ttgctggagg ccaacaaagc gtactggcca gagttacgtt
     8401 aattgtgtgg actggcatcc gttgggtgct ggtccgtatt ctttagcacg gctgacggcg
     8461 cataaccaaa tttatccggt gcgccgtaaa accccgtcct tcagggcggg gatataaggc
     8521 gcggttttcc acctaaccag gtgtttgctg ttgttcaatg tattggcgga tgacggatat
     8581 tggcgcacct ccgcagctat tggcaaaata gccaggactc cacaaaacgc ctttgtagta
     8641 atacctgact gcaatatctg gtcgatctcg tcgcagtaac ctacccgata cgcctttgag
     8701 gctgtttacc agactggata tcgccagttt gggaggatag ttaattaaca aatggacgtg
     8761 atctggttcg ccatccattt aaaccagttc agcttcaaaa tcagcacata catttgaaaa
     8821 gtaagtgcgt agtttttctg tcgcgtcat
//
LOCUS       DAJVSY010000163         8734 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.165, whole genome shotgun sequence.
ACCESSION   DAJVSY010000163 DAJVSY010000000
VERSION     DAJVSY010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8734)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8734)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8734
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.165"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            244..1155
                     /gene="ttdA"
                     /locus_tag="OQQ19_003505"
     CDS             244..1155
                     /gene="ttdA"
                     /locus_tag="OQQ19_003505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L(+)-tartrate dehydratase subunit alpha"
                     /protein_id="HCS1804993.1"
                     /translation="MMSESNKQQAVNKLTEIVANFTAMISTRMPDDVVDKLKQLKDAE
                     TSSMGKIIYHTMFDNMQKAIDLNRPACQDTGEIMFFVKVGSRFPLLGELQSILKQAVE
                     EATVKAPLRHNAVEIFDEVNTGKNTGSGVPWVTWDIIPDNDDAEIEVYMAGGGCTLPG
                     RSKVLMPSEGYEGVVKFVFENISTLAVNACPPVLVGVGIATSVETAAVLSRKAILRPI
                     GSRHPNPKAAELELRLEEGLNRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTG
                     CWAHRRGTLLVHADLTFENLSHTRSAL"
     gene            1152..1757
                     /gene="ttdB"
                     /locus_tag="OQQ19_003506"
     CDS             1152..1757
                     /gene="ttdB"
                     /locus_tag="OQQ19_003506"
                     /EC_number="4.2.1.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L(+)-tartrate dehydratase subunit beta"
                     /protein_id="HCS1804994.1"
                     /translation="MKKILTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELK
                     RPIPYDLNGKAIFHAGPIVRKNGDKWEMVSVGPTTSMRMESFEREFIEQTGVKLVVGK
                     GGMGPLTEEGCQKFKALHVIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVCRGKEF
                     GPLIVSIDTHGNNLIAENKKLFAERRDPIVEEICEHVHYIK"
     gene            1806..3269
                     /gene="ttdT"
                     /locus_tag="OQQ19_003507"
     CDS             1806..3269
                     /gene="ttdT"
                     /locus_tag="OQQ19_003507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-tartrate/succinate antiporter"
                     /protein_id="HCS1804995.1"
                     /translation="MKPSTEWWRYLAPLAVIAIIALIPVPAGLESHTWLYFAVFTGVI
                     VGLILEPVPGAVVAMVGISIIAILSPWLLFSPEQLAQPGFKFTAKSLSWAVFGFSNSV
                     IWLIFAAFMFGTGYEKTGLGRRIALILVKKMGHRTLFLGYAVMFSELILAPVTPSNSA
                     RGAGIIYPIIRNLPPLYQSQPNDSSSRSIGSYIMWMGIVADCVTSAIFLTAMAPNLLL
                     IGLMKSASHATLSWGDWFLGMLPLSILLVLLVPWLAYVLYPPVLKSGDQVPRWAETEL
                     QAMGPLCSREKRMLGLMVGALVLWIFGGDYIDAAMVGYSVVALMLLLHIISWDDIVSN
                     KAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLSGYSPTMVMVALIVVFYLLRY
                     FFASATAYTSALAPMMIAAALAMPEIPLPVFCLMVGAAIGLGSILTPYATGPSPIYYG
                     SGYLPTADYWRLGAIFGLIFLVLLVITGLLWMPVVLL"
     gene            complement(3312..4325)
                     /gene="tsaD"
                     /locus_tag="OQQ19_003508"
     CDS             complement(3312..4325)
                     /gene="tsaD"
                     /locus_tag="OQQ19_003508"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001264383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HCS1804996.1"
                     /translation="MRVLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVP
                     ELASRDHVRKTVPLIQAALKESGLTAKDIDAVAYTAGPGLVGALLVGATVGRSLAFAW
                     NVPAIPVHHMEGHLLAPMLEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDD
                     AAGEAFDKTAKLLGLDYPGGPLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFA
                     ANTIRDNGTDDQTRADIARAFEDAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLR
                     AKLAEMMKKRRGEVFYARPEFCTDNGAMIAYAGMVRFKAGATADLGVSVRPRWPLAEL
                     PAA"
     gene            4562..4777
                     /gene="rpsU"
                     /locus_tag="OQQ19_003509"
     CDS             4562..4777
                     /gene="rpsU"
                     /locus_tag="OQQ19_003509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HCS1804997.1"
                     /translation="MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTE
                     RKRAKASAVKRHAKKLARENARRTRLY"
     gene            4888..6633
                     /gene="dnaG"
                     /locus_tag="OQQ19_003510"
     CDS             4888..6633
                     /gene="dnaG"
                     /locus_tag="OQQ19_003510"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HCS1804998.1"
                     /translation="MAGRIPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHN
                     EKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAG
                     SGPSQIERHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGF
                     APPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGF
                     GGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQY
                     GINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQ
                     LRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLS
                     TLALPLISQVPGETLRIYLRQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTT
                     MRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYR
                     GTNNAATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGLSNE
                     ERLELWTLNQELAKK"
     gene            6828..8669
                     /gene="rpoD"
                     /locus_tag="OQQ19_003511"
     CDS             6828..8669
                     /gene="rpoD"
                     /locus_tag="OQQ19_003511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HCS1804999.1"
                     /translation="MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDI
                     IQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYM
                     REMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSD
                     LITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAR
                     EKFAELRAQYVVTRDTIKAKGRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVM
                     MDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS
                     EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK
                     KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI
                     RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME
                     TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID
                     MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD"
BASE COUNT         2110 a         2330 c         2333 g         1961 t
ORIGIN      
        1 cctgcaagtc tttggctaaa ggccagctat tcagcatcgt taattatccg cagttgtgat
       61 aagcgcagtg tatttcgcaa aacattgcca ttccctgctc tggcgcaata ttcattctta
      121 ttttcgcgtt gattcacgaa ctgttaatta catattcacg gtggcaaaaa atataaaacc
      181 acatttttag tggtagttta tggcggtgaa tttttccaga caaatacaaa aactggagtt
      241 gccatgatga gcgaaagtaa taagcaacag gcagtgaata agttgacaga gattgtcgct
      301 aactttaccg ccatgatttc tacccgaatg cctgatgacg tggtggataa actaaaacag
      361 ctaaaggatg ccgaaacgtc gtcgatgggg aaaattatct accatacgat gttcgacaac
      421 atgcaaaaag cgattgacct gaatcgtcct gcctgtcagg acaccgggga gattatgttc
      481 ttcgttaaag tcggttcccg cttcccactg cttggcgagc tgcaaagcat actcaaacaa
      541 gccgtggaag aggcaaccgt caaagcgcca ctacgtcaca atgcggtaga aatttttgac
      601 gaagtaaaca ccggcaaaaa taccggtagc ggcgtaccgt gggtcacctg ggacatcatc
      661 cccgacaatg acgatgcgga aatcgaagtt tacatggcag gtggcggctg cacgctacct
      721 ggccgctcga aagtgttaat gccgtcagaa ggctacgaag gcgtggtgaa attcgtcttc
      781 gaaaatatct ccaccctcgc cgtaaacgcc tgtccaccgg tactggtggg cgtgggcatc
      841 gccacctcgg tggaaaccgc cgccgtactc tcgcgtaaag ccattttgcg cccgattggc
      901 agccgccatc ccaatccaaa agcggcagaa ctggagctac gcctggaaga aggactcaac
      961 cgtctgggga ttggtccaca agggctgact ggcaacagtt cagtgatggg cgtacatatc
     1021 gaatctgccg cccgccatcc gtcaaccatc ggcgttgctg tctctaccgg ctgctgggcg
     1081 catcgtcgcg gcacactgct ggttcatgcc gatctcacct ttgaaaatct gtctcacacc
     1141 cggagcgcgt tatgaaaaag atcctgacaa ccccgatcaa agctgaagat ctgcaagata
     1201 ttcgcgtcgg cgatgtgatc tacctgaccg gtacgctggt gacctgccgt gacgtttgtc
     1261 accgccgctt gatcgaactg aaacgtccga tcccttacga tctcaacggc aaagcgattt
     1321 tccacgctgg ccccatcgtg cgcaaaaacg gcgataaatg ggagatggtt tccgttggcc
     1381 cgacaaccag tatgcgtatg gaaagttttg aacgtgaatt tatcgagcag accggcgtga
     1441 aactggtggt tggcaaaggc ggaatggggc cgctgaccga agaaggctgc cagaaattca
     1501 aggcgctaca tgtgattttc ccggcaggct gcgcggtgct ggcggcaacc caggtggaag
     1561 agattgaaga agtgcactgg acagagctcg gaatgccgga gtcgctgtgg gtctgccggg
     1621 gcaaagagtt cggcccgctg attgtctcta ttgataccca cggcaacaat ctgatagccg
     1681 aaaacaaaaa gctgttcgcc gaacgccgcg atcccatcgt ggaagagatc tgcgagcacg
     1741 tccattacat caaataaccc tcccggagag gctcgccccc tctccttttt cgcaggcata
     1801 acacgatgaa accttccact gaatggtggc gataccttgc gccgctggcg gtcatcgcca
     1861 ttattgctct aattccggtt cccgcagggc tggagagtca tacctggctc tactttgccg
     1921 tttttactgg cgtgatcgtt ggactgatcc tcgaacccgt gccgggtgcc gtggtggcga
     1981 tggtgggtat ctccatcatc gccatactct ctccctggct gctgttcagc cccgaacagc
     2041 tcgcccagcc aggctttaag ttcaccgcca aatccctctc ctgggcagtt tttggttttt
     2101 ctaattcggt tatctggctc attttcgccg cctttatgtt tggcacaggc tatgaaaaaa
     2161 ccgggcttgg acgccgcatt gcgctgattc tggtgaaaaa gatgggacat cgcacgctgt
     2221 ttctcggcta tgcggtgatg ttctccgagc tgatcctcgc acctgtaaca ccgtccaact
     2281 cggcgcgtgg tgcggggatt atctatccca tcatccgtaa cctgccaccg ctctatcaat
     2341 cacaaccaaa cgacagcagt tcgcgcagca ttggctcgta catcatgtgg atggggattg
     2401 ttgccgactg cgtgaccagc gccattttct tgacggcgat ggcaccaaac ttgctgttaa
     2461 ttggactgat gaaaagcgca tctcacgcca cgctgagttg gggcgactgg ttcctcggga
     2521 tgttgccgct cagtattttg ctggtgctgc tggttccctg gctggcttat gtgctgtacc
     2581 cgccggtact gaagtctggc gatcaggtgc cgcgctgggc agagacggaa ctgcaggcaa
     2641 tgggcccgct ctgttcgcgt gaaaaacgga tgctggggct gatggtaggc gcgctggtgc
     2701 tgtggatttt cggcggtgat tatatcgatg ccgcgatggt cggttacagc gtggtggcac
     2761 tgatgctgct tctgcacatt atcagttggg acgacattgt cagtaataaa gcggcgtgga
     2821 acgttttctt ctggctggcc tcgcttatca ccctcgctac cggactcaac aacactggtt
     2881 ttattagctg gtttggcaaa ctgttagcag gcagcttaag cggttattcg ccaacgatgg
     2941 tgatggtggc gttgattgtg gtgttttatc tgctgcgcta ctttttcgcc agcgccacgg
     3001 cgtatacctc cgccctcgca ccgatgatga ttgccgctgc gctggcgatg ccggaaatcc
     3061 cgctgccggt gttctgccta atggttggcg cggcaattgg tctggggagc attcttacac
     3121 catacgccac cggacccagt ccgatttact acggtagtgg ttatctgcca acggcggatt
     3181 actggcgact gggggcgatt tttgggctga tattcctcgt gttgctggtg attaccggct
     3241 tactgtggat gcccgtggtg ttgctttaag tgaggacggt gccggaaatt gctctccggc
     3301 acccaatagt tttacgcagc cggtaactcc gccagcggcc agcgcggacg cacgctaacg
     3361 ccgagatccg ccgtcgcgcc tgctttaaac cgcaccattc cggcataggc gatcatcgcg
     3421 ccgttatcag tacaaaactc cggacgcgcg tagaacactt cgccgcggcg ttttttcatc
     3481 atttccgcca gcttcgcccg taacgtgcgg ttagcactca cgccgcccgc catgaccagt
     3541 cgcttaaagc ccgtctgatc caacgctcgc ttacacttaa tcatcaacgt atcgaccacc
     3601 gcatcttcaa aggcgcgggc gatatcagca cgcgtctggt cgtcggtgcc gttgtcacga
     3661 atcgtgttcg ccgcaaaggt tttcagacca gaaaagctga aatccagccc cggacggtcg
     3721 gtcatcggac gcgggaaaac aaagcgcccg gcagtaccct gagccgccat tttcgacagt
     3781 aacggtccgc caggataatc cagccccagc agcttcgcgg ttttatcaaa cgcttcaccg
     3841 gcggcatcat cgatagactc gccgagcagc tcgtactgac caatgccagt cacgctgatt
     3901 aactgcgtat gaccgccgga caccagcagc gcgacaaacg gaaattccgg cgggttatct
     3961 tccagcatcg gcgctaacag atgcccttcc atatggtgta ccgggattgc cggaacgttc
     4021 caggcaaacg ccagagaacg ccccacggtt gcgccaacca gcagtgcgcc gactaatcca
     4081 gggcctgcgg tataggccac agcatcaatg tcttttgccg ttaagccaga ctcctttagc
     4141 gccgcctgga tcaacggtac ggttttgcgc acgtgatcgc gggaggccag ttcaggcacg
     4201 acgccgccgt agtcagcgtg caatttcacc tgactataca attggttggc taacaaacct
     4261 ttttcatcgt cgtaaatggc gatgccggtt tcatcgcagg aagtttcaat acccagtaca
     4321 cgcatgactt gttttacctc gctttattac cgcgcagtgt aggaccaatg cgggttgatg
     4381 taaaactttg ttcgcccctg gagaaagcct cgtgtatact cctcaccctt ataaaagtcc
     4441 ctttcaaaaa ggccgcggtg ctttacaaag cagcagcaat tgcagtaaaa ttccgcacca
     4501 ttttgaaata agctggcgtt gatgccagcg gcaaaccgaa ttaatcaaag gtgagaggca
     4561 catgccggta attaaagtac gtgaaaacga gccgttcgac gtagctctgc gtcgcttcaa
     4621 gcgttcctgc gaaaaagcag gtgttctggc ggaagttcgt cgtcgtgagt tctatgaaaa
     4681 accgactacc gaacgtaagc gcgctaaagc ttctgcagtg aaacgtcacg cgaagaaact
     4741 ggctcgcgaa aacgcacgcc gcactcgtct gtactaattc cccgagagcg ttgctctccg
     4801 atcagaccga gttgtagttg taaggccgtg cttccgaaag gaatgcgcgg cttattttcg
     4861 tttatgaatt gctaaaaatc ggggcctatg gctggacgaa tcccacgcgt attcattaat
     4921 gatctactgg cacgcactga catcgtcgat ctgatcgatg cccgtgtgaa gctgaaaaag
     4981 cagggcaaga atttccacgc gtgttgtcca ttccacaacg agaaaacccc gtcattcacc
     5041 gttaacggtg agaaacagtt ttaccactgc tttggatgtg gcgcgcacgg caacgcgatc
     5101 gacttcctga tgaactacga caagcttgag ttcgtcgaaa cggtcgaaga gctggcagca
     5161 atgcacaatc ttgaagtgcc atttgaagca ggcagcggcc ccagccagat cgagcgccat
     5221 cagaggcaaa cgctttatca gttgatggac ggtctgaata cgttttacca acaatcttta
     5281 caacaacctg ttgccacgtc tgcgcgccag tatctggaaa aacgcggatt aagccacgag
     5341 gttatcgctc gctttgcgat tggttttgcg ccccccggct gggacaacgt cctgaagcgg
     5401 tttggcggca atccagaaaa tcgccagtca ttgattgatg cggggatgtt ggtcactaac
     5461 gatcagggac gcagttacga tcgtttccgc gagcgggtga tgttccccat tcgcgataaa
     5521 cgcggtcggg tgattggttt tggcgggcgc gtgctgggca acgatacccc caaatacctg
     5581 aactcgccgg aaacagacat tttccataaa ggccgccagc tttacggtct ttatgaagcg
     5641 cagcaggata acgctgaacc caatcgtctg cttgtggtcg aaggctatat ggacgtggtg
     5701 gcgctggcgc aatacggcat taattacgcc gttgcgtcgt taggtacgtc aaccaccgcc
     5761 gatcacatac aactgttgtt ccgcgcgacc aacaatgtca tttgctgtta tgacggcgac
     5821 cgtgcaggcc gtgatgccgc atggcgagcg ctggaaacgg cgctgcctta catgacagac
     5881 ggccgtcagc tacgctttat gtttttgccg gatggcgaag accctgacac gctggtacga
     5941 aaagaaggta aagaagcgtt tgaagcgcgg atggagcagg cgatgccact ctccgcattt
     6001 ctgtttaaca gcctgatgcc gcaagttgat ctgagtaccc ctgacgggcg cgcacgtttg
     6061 agtacgctgg cactgccatt gatatcgcaa gtgccgggcg aaacgctgcg aatatatctt
     6121 cgtcaggaat taggcaacaa attaggcata cttgatgaca gccagcttga acgattaatg
     6181 ccaaaagcgg cagagagcgg cgtttctcgc cctgttccgc agctaaaacg cacgaccatg
     6241 cgtatactta tagggttgct ggtgcaaaat ccagaattag cgacgttggt cccgccgctt
     6301 gagaatctgg atgaaaataa gctccctgga cttggcttat tcagagaact ggtcaacact
     6361 tgtctctccc agccaggtct gaccaccggg caacttttag agcactatcg tggtacaaat
     6421 aatgctgcca cccttgaaaa actgtcgatg tgggacgata tagcagataa gaatattgct
     6481 gagcaaacct tcaccgactc actcaaccat atgtttgatt cgctgcttga actgcgccag
     6541 gaagagttaa tcgctcgtga gcgcacgcat ggtttaagca acgaagaacg cctggagctc
     6601 tggacattaa accaggagct ggcgaaaaag tgatttaacg gcttaagtgc cgaagagcga
     6661 tcgggaagcc cccgacagcc gcactgagag gcagcggcaa atatataagt acgccctcgt
     6721 aattatcgtt ggcggtaaac aaccgttgga tttcagcgtt aacggctgaa ggacatcggg
     6781 tcaatcgccc aacaccaacc tcatgaaata agtgtggata ccgtcttatg gagcaaaacc
     6841 cgcagtcaca gctgaaactt cttgtcaccc gtggtaagga gcaaggctat ctgacctatg
     6901 ccgaggtcaa tgaccatctg ccggaagata tcgtcgattc agatcagatc gaagacatca
     6961 tccaaatgat caacgacatg ggcattcagg tgatggaaga agcaccggat gccgatgatc
     7021 tgatgctggc tgaaaacacc gcggacgaag atgctgccga agccgccgcg caggtgcttt
     7081 ccagcgtgga atctgaaatc gggcgcacga ctgacccggt acgcatgtac atgcgtgaaa
     7141 tgggcaccgt tgaactgttg acccgcgaag gcgaaattga catcgctaag cgtattgaag
     7201 acgggatcaa ccaggttcaa tgctccgttg ctgaatatcc ggaagcgatc acctatctgc
     7261 tggaacagta cgatcgtgtt gaagcagaag aagcgcgtct gtccgatctg atcaccggct
     7321 ttgttgaccc gaacgcagaa gaagatctgg cacctaccgc cactcacgtc ggttctgagc
     7381 tttcccagga agatctggac gatgacgaag atgaagacga agaagatggc gatgacgaca
     7441 gcgccgatga tgacaacagc atcgacccgg aactggctcg cgaaaaattt gcggaactac
     7501 gcgctcagta cgttgtaacg cgtgacacca tcaaagcgaa aggtcgcagt cacgctgccg
     7561 ctcaggaaga gatcctgaaa ctgtctgaag tattcaaaca gttccgcctg gtgccgaagc
     7621 agtttgacta cctggtcaac agcatgcgcg tcatgatgga ccgcgttcgt acgcaagaac
     7681 gtctgatcat gaagctctgc gttgagcagt gcaaaatgcc gaagaaaaac ttcattaccc
     7741 tgtttaccgg caacgaaacc agcgatacct ggttcaacgc ggcaattgcg atgaacaagc
     7801 cgtggtcgga aaaactgcac gatgtctctg aagaagtgca tcgcgccctg cagaaactgc
     7861 agcagattga agaagaaacc ggcctgacca tcgagcaggt taaagatatc aaccgtcgta
     7921 tgtccatcgg tgaagcgaaa gcccgccgtg cgaagaaaga gatggttgaa gcgaacttac
     7981 gtctggttat ttctatcgcc aagaaataca ccaaccgtgg cttgcagttc cttgacctga
     8041 ttcaggaagg caacatcggt ctgatgaaag cggttgataa attcgaatac cgccgtggtt
     8101 acaagttctc cacctacgca acctggtgga tccgtcaggc gatcacccgt tctatcgcgg
     8161 atcaggcgcg caccatccgt attccggtgc atatgattga gactatcaac aaactcaacc
     8221 gtatttctcg ccagatgctg caagagatgg gccgtgaacc gacgccggaa gaactggctg
     8281 aacgtatgct gatgccggaa gacaagatcc gcaaagtgct gaagatcgcc aaagagccaa
     8341 tctccatgga aacgccgatc ggtgatgatg aagattcgca tctgggggat ttcatcgagg
     8401 ataccaccct cgagctgccg ctggattctg cgaccaccga aagcctgcgt gcggcaacgc
     8461 acgacgtgct ggctggcctg accgcgcgtg aagcgaaagt tctgcgtatg cgtttcggta
     8521 tcgatatgaa caccgaccac acgctggaag aagtgggtaa acagttcgac gttacccgcg
     8581 aacgtatccg tcagatcgaa gcgaaggcgc tgcgcaaact gcgtcacccg agccgttctg
     8641 aagtgttgcg tagcttcctg gacgattaat cggtaggccg gatcaggcgt tacgccgcac
     8701 ccggcactag tccctctgca caaacgccac cttt
//
LOCUS       DAJVSY010000164         8698 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.166, whole genome shotgun sequence.
ACCESSION   DAJVSY010000164 DAJVSY010000000
VERSION     DAJVSY010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8698
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.166"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            107..283
                     /locus_tag="OQQ19_003512"
     CDS             107..283
                     /locus_tag="OQQ19_003512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312842.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HCS1805000.1"
                     /translation="MKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKG
                     EVVGVDDQCKEHKE"
     gene            502..744
                     /locus_tag="OQQ19_003513"
     CDS             502..744
                     /locus_tag="OQQ19_003513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709694.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805001.1"
                     /translation="MNSLAGIDMGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVD
                     QYLINQSQTARTSVPGIWQGCEEDGVEYQRKLREEW"
     gene            complement(1074..2003)
                     /gene="fdhE"
                     /locus_tag="OQQ19_003514"
     CDS             complement(1074..2003)
                     /gene="fdhE"
                     /locus_tag="OQQ19_003514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory protein FdhE"
                     /protein_id="HCS1805002.1"
                     /translation="MSIRIIPQDELGSSEKRTADMIPPLLFPRLKNLYNRRAERLREL
                     AENNPLDDYLRFAALIAHAQEVVLYDHPLEMDLTARIKEASAQGKPPLDIHVLPRDKH
                     WQKLLMALIAELKPEMSGPALAVIENLEKASTQELEDMASALFASDFSSVSSDKAPFI
                     WAALSLYWAQMANLIPGKARAEYGEQRQYCPVCGSMPVSSMVQIGTTQGLRYLHCNLC
                     ETEWHVVRVKCSNCEQSGKLHYWSLDDEQAAIKAESCDDCGTYLKILYQEKEPKVEAV
                     ADDLASLVLDARMEQEGYARSSINPFLFPGEGE"
     gene            complement(2000..2635)
                     /gene="fdoI"
                     /locus_tag="OQQ19_003515"
     CDS             complement(2000..2635)
                     /gene="fdoI"
                     /locus_tag="OQQ19_003515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase cytochrome b556 subunit"
                     /protein_id="HCS1805003.1"
                     /translation="MKRRDTIVRYTAPERINHWITAFCFILAAVSGLGFLFPSFNWLM
                     QIMGTPQLARILHPFVGVVMFASFIIMFFRYWHHNLINRDDIFWAKNIRKIVVNEEVG
                     DTGRYNFGQKCVFWAAIIFLVLLLVSGVIIWRPYFAPAFSIPVIRFALMLHSFAAVAL
                     IVVIMVHIYAALWVKGTITAMVEGWVTSAWAKKHHPRWYREVRKTTEKKAE"
     gene            complement(2632..3534)
                     /gene="fdoH"
                     /locus_tag="OQQ19_003516"
     CDS             complement(2632..3534)
                     /gene="fdoH"
                     /locus_tag="OQQ19_003516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase O subunit beta"
                     /protein_id="HCS1805004.1"
                     /translation="MAYQSQDIIRRSATNGLTPAPQARDFQEEVAKLIDVTTCIGCKA
                     CQVACSEWNDIRDTVGNNIGVYDNPNDLSAKSWTVMRFSEVEQNDKLEWLIRKDGCMH
                     CSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDIPRLNPEDNRVYKC
                     TLCVDRVVVGQEPACVKTCPTGAIHFGTKESMKTLASERVAELKTRGYDNAGLYDPAG
                     VGGTHVMYVLHHADKPNLYHGLPENPEISETVKFWKGIWKPLAAVGFAATFAASIFHY
                     VGVGPNRADEEENNLHEEKDEERK"
     gene            complement(3547..6597)
                     /gene="fdnG"
                     /locus_tag="OQQ19_003517"
     CDS             complement(3547..6597)
                     /gene="fdnG"
                     /locus_tag="OQQ19_003517"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(6010..6012),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HCS1805005.1"
                     /translation="MQVSRRQFFKICAGGMAGTTAAALGFAPSVALAETRQYKLLRTR
                     ETRNTCTYCSVGCGLLMYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFI
                     HSESRLKFPEYRAPGSDKWQQISWEEAFDRIAKLMKEDRDANYIAQNAEGVTVNRWLS
                     TGMLCASASSNETGYLTQKFSRALGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV
                     DIKNANLVVVMGGNAAEAHPVGFRWAMEAKIHNGAKLIVIDPRFTRTAAVANYYAPIR
                     SGTDIAFLSGVLLYLLNNEKFNREYTEAYTNASLIVREDYGFEDGLFTGYDAEKRKYD
                     KSSWTYELDENGFAKRDTTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKDAFLKVCE
                     YIAETSAHDKTASFLYALGWTQHSVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN
                     IQGLTDLGLLSQSLPGYMTLPSEKQTDLQTYLTANTPKPLLEGQVNYWGNYPKFFVSM
                     MKAFFGDKATAENSWGFDWLPKWDKGYDVLQYFEMMKEGKVNGYICQGFNPVASFPNK
                     NKVIGCLSKLKFLVTIDPLNTETSNFWQNHGELNEVDSSKIQTEVFRLPSTCFAEENG
                     SIVNSGRWLQWHWKGADAPGIALTDGEILSGIFLRLRKMYAEQGGANPDQVLNMTWNY
                     AIPHEPKSEEVAMESNGKALADITDPATGAVIVKKGQQLSSFAQLRDDGTTSCGCWIF
                     AGSWTPEGNQMARRDNADPSGLGNTLGWAWAWPLNRRILYNRASADPQGNPWDPKRQL
                     LKWDGTKWTGWDIPDYSAAPPGSGVGPFIMQQEGMGRLFALDKMAEGPFPEHYEPFET
                     PLGTNPLHPNVISNPAARIFKDDAEALGKADKFPYVGTTYRLTEHFHYWTKHALLNAI
                     LQPEQFVEIGESLANKLGIAQGDTVKVSSNRGYIKAKAVVTKRIRTLKANGKDIDTIG
                     IPIHWGYEGVAKKGFIANTLTPFVGDANTQTPEFKSFLVNVEKV"
     gene            6791..7624
                     /gene="fdhD"
                     /locus_tag="OQQ19_003518"
     CDS             6791..7624
                     /gene="fdhD"
                     /locus_tag="OQQ19_003518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HCS1805006.1"
                     /translation="MKKTQRKEIENVTNITGVRQIELWRRDDLQHPRLDEVAEEVPVA
                     LVYNGISHVVMMASPKDLEYFALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSS
                     RRFMGLKERRRALAGRTGCGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDF
                     QPVGQLTGCTHAAAWMLPSGELVGGHEDVGRHVALDKLLGRRSQEGESWQQGAVLVSS
                     RASYEMVQKSAMCGVEILFAVSAATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRLS
                     N"
     gene            7778..>8698
                     /locus_tag="OQQ19_003519"
     CDS             7778..>8698
                     /locus_tag="OQQ19_003519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiG family protein"
                     /protein_id="HCS1805007.1"
                     /translation="MKRNLLSSAIIVAIMALGLTGCDDKKAETETPPPANSQPAAPAP
                     EAPVAKAEAKPETPAQPVVDEQAVFDEKMDVYIKCYNKLQIPVQRSLARYVDWLKDFK
                     QGPTGEERTVYGIYGISESNLAECEKGVKSAVALTPALQPIDGVAVSYIDAAVALGNT
                     INEMDKYYTQENYKDDAFAKGKTLHQTFLKNLEAFEPVAESYHAAIQEINDKRQLAEL
                     KNIEEREGKIFHYYSLAVMISAKQINNLISQEKFDVDAAMKKVSELETLVAQAKEADK
                     GGMNFSFINSAGQYQLEAKKYVRRIRDKVPY"
BASE COUNT         2070 a         2198 c         2294 g         2136 t
ORIGIN      
        1 ctctttagag taacgttggt tttttctgct cattattagc tccttctgat gccattctat
       61 ttcaggaagg agtgtccgtt aaactcaggc tacctcagaa gaggcaatta aacggctgaa
      121 caagcttcgg ggctggcgta aggtttcacg atctgcaatt ttacgcgaag cggttgagca
      181 atatctggag cggcagcaat ttccggtgcg taaagcaaag ggaggcaggc aaaaggggga
      241 ggtagttggt gttgatgatc agtgtaagga gcataaggaa tgaaaaaaat ttttcattct
      301 tgaatataaa aaaacagatg cccttattct ggtattaata caaggctgtt ttacttgaac
      361 ttataataac tgcaactgtt acatcgtatc tggaaaacgc ctcgcaaaaa taaaaaatga
      421 tgcgtaaatg agctttcttt aaagattcgg caagggtact tttctctcca tagattcaaa
      481 aatgatattg gcgagatatt tatgaactct ctggcaggta tagatatggg cagaatttta
      541 ctcgatttat cgaatgaggt gattaagcaa cttgatgatc tcgaggtgca gcgtaatctt
      601 cctcgtgcgg acctattaag ggaagcggta gatcaatacc tgataaatca atcgcaaaca
      661 gcaagaacca gtgttcctgg catctggcaa gggtgtgagg aagatggtgt cgaatatcag
      721 cgtaagctgc gcgaggaatg gtaatgggaa aaaatgatgt caatcagatt gctgacaacg
      781 tgcgcgttgt tcatgccgga tgcggcgtga acgccttatc cggcctacaa agtcatgcaa
      841 attcaatata ttgaagttta ttggtaggcc tgataagcgc agcgcatcag gcaatcatac
      901 gcttgtcatc agtgacatac ccataacctt atcgatgtgt tggagggaag aacgaggcaa
      961 acagacaatt gcggcatgat cttgaatggg taacgcggaa tacgagagat ggtgtcgtca
     1021 caccctatga gctgtaatcc gggcgaccag cgccacccgg aaaacgtcag agattactcc
     1081 ccttcacccg gaaacaggaa cgggttgatg gaactgcggg catagccttc ttgctccatt
     1141 cgcgcgtcca gtaccagaga agcgaggtca tctgccacgg cttcaacttt cggttctttt
     1201 tcctgataaa gaatcttcag gtaagtgccg cagtcatcgc agctttcggc tttaatcgcg
     1261 gcctgttcgt catccagcga ccagtaatgc agtttgccgc tctgttcaca gttgctgcat
     1321 tttacgcgca ctacgtgcca ttcggtttca cacaggttgc agtgcaggta acgcagaccc
     1381 tgagtggtgc caatttgcac catgctggac accggcatag aaccacaaac cgggcaatat
     1441 tgacgttgct cgccgtattc agcgcgggct ttgccgggga tcagattggc catctgcgcc
     1501 cagtagagcg acagtgcagc ccagataaac ggcgctttat cgctgctgac ggatgagaaa
     1561 tcagaggcaa acagtgcgct ggccatatct tccagctcct gagtcgatgc cttctccaga
     1621 ttctcaatca ctgccagcgc cgggccgctc atttcaggtt tcagctcagc aatcagcgcc
     1681 atcagcagct tttgccagtg cttatcacgc ggcagaacgt gaatatccag cgggggcttg
     1741 ccctgtgcgc tggcttcttt aatgcgcgcg gtcagatcca tctccagcgg atggtcgtac
     1801 agcaccactt cctgggcgtg ggcgataagc gcagcaaagc gcaggtaatc atccagcgga
     1861 ttattttctg ccagctcgcg cagacgctcg gcgcggcggt tgtataaatt cttgagccga
     1921 gggaacaata acggcggaat catatccgcc gtacgtttct cgctcgaacc cagctcatct
     1981 tgcgggatta tgcgaatact cattcagctt tcttttccgt tgtcttgcgg acctcacggt
     2041 accagcgcgg gtgatgtttc ttcgcccagg cgctggtaac ccatccttcc accatggcgg
     2101 taatcgtgcc tttcacccaa agggcggcgt agatatgcac catgataacc acaattaacg
     2161 ccactgcggc aaatgaatgc agcattaacg cgaatcggat caccgggatt gagaaagcag
     2221 gcgcaaaata aggacgccag ataatcacgc cgctcaccag cagcagaacc aggaaaataa
     2281 tcgccgccca gaaaacgcat ttctgaccga agttataacg cccggtgtca cctacttcct
     2341 cgttgacgac gatcttacga atattcttcg cccaaaagat atcatcccga ttgattaggt
     2401 tgtgatgcca gtaacggaaa aacatgatga tgaacgaggc aaacataacc acgccgacaa
     2461 acgggtgcag aattcgcgcc agctgcggtg tgcccatgat ttgcatcaac cagttgaagg
     2521 acgggaacaa aaagcccagc ccgctcaccg ccgctaggat gaagcagaag gcggtgatcc
     2581 agtggttgat acgttccggc gcggtgtagc gcacgatggt gtcacgtcgt ttcatttgcg
     2641 ctcctcgtct ttctcttcgt gcagattatt ctcttcctca tccgcacggt tcggaccgac
     2701 acccacgtag tggaagatac tggctgcgaa ggtagccgca aagccaacag ctgcgagcgg
     2761 tttccagatg cctttccaga atttcacggt ttcgctgatt tccgggttct ccggcaagcc
     2821 atgatacaga tttggcttgt cagcatggtg cagcacgtac ataacgtgtg taccaccgac
     2881 gcctgccgga tcgtacaggc ccgcattgtc gtaaccgcgg gttttcagct ccgccacgcg
     2941 ctcgctcgcc agcgttttca tcgactcttt cgtaccgaag tgaatcgcgc ccgttgggca
     3001 ggtcttcacg caggctggtt cttgcccaac caccacgcgg tcaacgcaca gcgtacattt
     3061 gtagacgcgg ttgtcttccg ggttgaggcg cggaatgtcg aacggacagc ccgcaatgca
     3121 ataaccgcag ccaatgcact gctcggactg gaagtcgacg ataccgttgg catactgaat
     3181 aattgcacct tccgccgggc acgctttcag acagcctgga tcggaacagt gcatacagcc
     3241 gtctttgcgg atcagccatt ccagtttgtc gttctgctcc acttccgaga agcgcatcac
     3301 cgtccacgat ttggcactta aatcattggg gttgtcgtac accccaatgt tattgccgac
     3361 ggtatcgcga atgtcgttcc actctgaaca cgccacctga caggctttac agccgataca
     3421 ggtggtgacg tcgatgagtt tcgccacttc ttcctggaag tcccgcgcct gaggcgcggg
     3481 ggtcagaccg ttagtcgcgg aacgacgaat gatatcttga gattgataag ccatatgtcg
     3541 tctccgttac accttttcca cattcacaag gaaggactta aactccggcg tctgcgtgtt
     3601 cgcatcacca acgaatggcg ttaaagtatt ggcaataaag ccttttttag ctacgccttc
     3661 atagccccag tgaatcggaa taccgatggt atcgatatct ttgccgttcg ctttcagcgt
     3721 gcgaatacgt ttggtcacca ccgctttggc tttgatatag ccacggttgg aggagacttt
     3781 cacggtatcg ccctgggcaa tgccaagttt attcgccagc gactccccga tttccacaaa
     3841 ctgctctggc tgcaaaatcg cgttcaacag cgcgtgtttg gtccagtagt ggaagtgctc
     3901 ggtcagacga taggtggttc cgacatacgg gaacttatcg gctttaccca atgcttcggc
     3961 gtcgtcttta aagatacgtg cagccgggtt cgagataacg tttggatgca gcgggttagt
     4021 tcccagcggc gtttcaaacg gctcgtagtg ttccgggaac ggaccttccg ccatcttatc
     4081 gagggcaaac agacgcccca tgccttcctg ctgcatgata aacggcccga cgccgctacc
     4141 cggaggcgct gcgctgtagt ccggaatatc ccagccggtc cacttagtgc cgtcccattt
     4201 cagcaactga cgcttcggat cccacgggtt accctgcgga tctgcggagg cgcggttata
     4261 cagaatgcgg cggttaagcg gccatgccca tgcccagccc agcgtgttac cgaggccaga
     4321 cggatcggcg ttatcacgac gcgccatctg gttgccttcc ggcgtccagc taccggcgaa
     4381 aatccagcag ccacaggagg ttgtaccgtc atcgcgcaat tgggcgaacg agctaagttg
     4441 ttggcctttc ttgacgataa ccgcaccggt tgccggatcg gtaatatcgg ccagcgcctt
     4501 accgttgctc tccatcgcta cttcttccga cttcggctca tgcggaatgg cgtagttcca
     4561 ggtcatgttc agcacctgat ccgggttcgc gccaccctgt tcggcataca tcttgcgcaa
     4621 gcgcaggaag ataccggaga ggatctcacc gtcagtcagc gcaatccccg gggcgtccgc
     4681 acctttccag tgccactgca accagcgacc tgagttaacg attgaaccgt tctcttctgc
     4741 gaagcaggtc gatggcagac ggaacacttc ggtctggatc ttcgacgagt caacttcgtt
     4801 cagctcaccg tggttctgcc agaagttaga ggtttcagtg ttcagcgggt cgatggtgac
     4861 gaggaacttc agtttcgaca gacaaccgat cactttgttt ttgttcggga atgaggcaac
     4921 agggttaaaa ccctggcaga tatagccatt gaccttgccc tctttcatca tctcgaagta
     4981 ttgcaggacg tcgtagcctt tatcccactt cggcaaccag tcaaagcccc agctattttc
     5041 cgccgtcgct ttatcaccaa agaaggcctt catcatagag acgaagaatt tcgggtagtt
     5101 gccccagtag tttacctggc cttccagcag cggttttggc gtgttggcgg taaggtaggt
     5161 ttgcagatcg gtctgcttct cgcttggcag cgtcatgtaa cctggcaggc tctgcgacag
     5221 cagccccagg tccgtcagcc cctgaatatt ggagtgaccg cgcagggcgt taacgccgcc
     5281 gcctgccatc cccatattgc cgagcagcag ctggatcatc gccatcgtac gaatgttttg
     5341 cgcaccaacg gagtgttgcg tccagccgag ggcatacagg aacgaggcag ttttatcgtg
     5401 agcactggtt tctgcgatgt attcgcagac tttcaggaac gcgtcttttg gcgtaccaca
     5461 gatgttttca accacatctg gcgtgtagcg ggaaacgtgc tgtttcagca agttccacac
     5521 gcagcgcgga tgttgcagcg tggtatcgcg tttggcgaag ccgttttcgt ccagttcgta
     5581 agtccaggag gatttatcgt acttgcgttt ttccgcgtca tagccggtga aaaggccatc
     5641 ttcaaagccg taatcctcac gcacgatcag gctggcgttg gtataggctt cggtgtattc
     5701 gcggttgaat ttttcattgt tcagcaggta cagcaatacg cctgacagga aagcaatgtc
     5761 agtaccggaa cgaatagggg catagtagtt agctaccgcc gccgtacgcg taaagcgagg
     5821 atcgatcaca atcagcttcg cgccgttgtg aattttggct tccatcgccc agcggaaccc
     5881 gaccgggtga gcttcagcgg cgttaccgcc catcaccacg acgaggttgg cgttcttgat
     5941 gtcgacccag tggttggtca tcgcaccgcg accaaatgtt ggagcaagac ttgctaccgt
     6001 tggtccgtgt cagacacgcg cctggttgtc gaccgcgagc atacccagcg cgcgggagaa
     6061 tttttgcgtt aaatagccgg tttcgttact cgacgcggaa gcacacagca tcccggtgga
     6121 gagccagcgg ttaacagtca cgccttcggc gttttgcgca atgtagttag catcgcggtc
     6181 ttctttcatc agtttggcga tgcgatcaaa cgcctcttcc caactgattt gctgccattt
     6241 atcagaacct ggcgcacggt attccggaaa cttcagacgg ctttcggagt ggatgaaatc
     6301 caccaggcca gcgcctttcg gacaaagtgc accgcggttg accgggtgat ccggatcgcc
     6361 ttcgatatgg aagatagatg ctttggcgtt ttttgctccg tcaccgaggc tgtacatcaa
     6421 cagcccacag cctacggaac aataggtgca ggtattacgg gtttcgcggg tgcgcagcag
     6481 tttatactgc cgggtttccg cgagtgctac gctgggtgca aaacctagtg ccgctgccgt
     6541 ggtgcctgcc ataccgccag cgcagatctt aaagaactgc cttctgctga cctgcatgga
     6601 ttgctccttg tttcgacatt gtcacgtccc atttacattc gcttgctgcg tgtgcaggga
     6661 gtgggagtta tttttctttg cggaaggggc cgcaaaggtc cagaattggc tcgatttccc
     6721 tccatccagg aagggtttgt aacagaatac cataatgttg gtgtgtgtgt tcttatctgg
     6781 ttaagagaaa gtgaaaaaaa cacagcgaaa agaaatcgaa aatgtgacaa atatcacagg
     6841 tgttcgtcaa attgagttat ggcggcgtga tgatttacaa cacccacggt tagatgaggt
     6901 cgcggaagaa gttcccgttg cgctggtcta caacggcatt tcgcatgtgg tgatgatggc
     6961 gtcgcccaaa gaccttgagt actttgcgct cggtttttcg ctttccgagg ggattatcga
     7021 aagtccgcgc gatatcttcg gcatggatgt cgttccttcc tgtaatggtc ttgaagtaca
     7081 aattgagctt tccagccgcc gctttatggg gttgaaggag cgccgccggg cgctggcggg
     7141 acgtacgggc tgtggcgtat gcggcgtgga gcaacttaat gacatcggaa aaccggtgca
     7201 gccgctaccg ttcacccaga cgtttgatct caacaaactg gatgatgcat tacgtcatct
     7261 caacgatttt cagccagtgg ggcaactgac tggttgtact cacgccgctg cctggatgtt
     7321 gccatctggc gaactggtcg gcgggcatga agacgtgggg cgccatgtgg cgctggacaa
     7381 actgttaggc cgccggtcac aagaagggga aagctggcag caaggtgcgg tactggtttc
     7441 cagtcgtgcc agttatgaaa tggtgcaaaa gtcggcgatg tgcggcgtag agattttgtt
     7501 tgcggtgtct gccgcgacca cgcttgctgt agaagtggct gagcgctgta atctgacact
     7561 ggtaggtttt tgtaaaccgg gtcgggcaac ggtttatacc catccgcagc gtttgagcaa
     7621 ttaattaaaa taagtcctgc gatatatatt aaattgcagg acttattcat ttcgtgaatt
     7681 ttattatttt tatttataaa taaaacgcgt gtagtggcgt tttctttttt catttattat
     7741 gttcactctc ttatctatat atttataagg caattaaatg aaaaggaatt tattatcttc
     7801 cgctattata gtcgccatca tggccctcgg tctgacgggt tgtgatgata aaaaagccga
     7861 aacagaaacg cccccgcctg ccaatagtca acctgccgca ccagctcctg aagctcccgt
     7921 tgcaaaagca gaagctaaac ctgaaacacc tgcgcaaccg gtggtcgatg aacaagcggt
     7981 tttcgacgaa aaaatggatg tctatatcaa gtgctataac aagttacaga tccctgtaca
     8041 gcgcagtctg gcgcgttatg ttgactggct gaaagatttt aaacaggggc ctaccggtga
     8101 agagcgtact gtttatggca tctacggcat tagtgaatcc aacctcgctg agtgtgaaaa
     8161 aggcgtaaaa agtgctgtgg cgttaacgcc tgcgctgcaa ccaattgatg gcgtggcggt
     8221 gagttatatc gatgctgccg tggcgttggg taataccatt aacgaaatgg ataaatatta
     8281 cacccaggaa aattataaag acgatgcgtt tgcgaaaggg aaaacgctgc accagacatt
     8341 cttaaaaaat ctggaagcct ttgaacctgt agcagaatct tatcatgcgg cgattcagga
     8401 aattaacgat aagcgccagc ttgcggaact gaaaaatatt gaagaaagag aagggaaaat
     8461 attccactac tattctctgg cagtcatgat ttcagcgaaa caaattaata acctgatatc
     8521 gcaagagaag tttgatgttg atgcggcaat gaagaaagtg tctgaactgg aaacgctggt
     8581 ggcgcaggcc aaagaagcgg ataaaggcgg catgaatttc tcgtttatta attcggcagg
     8641 ccagtatcaa ctcgaggcta aaaaatacgt tcgccgcatc agagataaag tcccgtac
//
LOCUS       DAJVSY010000165         8455 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.167, whole genome shotgun sequence.
ACCESSION   DAJVSY010000165 DAJVSY010000000
VERSION     DAJVSY010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8455
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.167"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..201
                     /gene="csgC"
                     /locus_tag="OQQ19_003520"
     CDS             <1..201
                     /gene="csgC"
                     /locus_tag="OQQ19_003520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706954.2"
                     /note="involved in autoagglutination of curliated cells;
                     not involved in production of curli fibers; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curli assembly protein CsgC"
                     /protein_id="HCS1805008.1"
                     /translation="SLREGGSGQSQTKQEKTLSLPANQPIALTKLSLNISPEDRVKIV
                     VTVSDGQALHLSQQWPPSSEKS"
     gene            322..633
                     /locus_tag="OQQ19_003521"
     CDS             322..633
                     /locus_tag="OQQ19_003521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS1805009.1"
                     /translation="MFRPFLNSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDV
                     STQSSPVEMNCPQNGSVPGKTYSSKALMSGNVKNAQVASVKVQYIDKQKKLAVMNIEY
                     N"
     gene            729..1262
                     /gene="ymdB"
                     /locus_tag="OQQ19_003522"
     CDS             729..1262
                     /gene="ymdB"
                     /locus_tag="OQQ19_003522"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetyl-ADP-ribose deacetylase"
                     /protein_id="HCS1805010.1"
                     /translation="MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGP
                     ALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYL
                     NSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYD
                     EENAHLYERLLTQQGDE"
     gene            1204..2685
                     /gene="clsC"
                     /locus_tag="OQQ19_003523"
     CDS             1204..2685
                     /gene="clsC"
                     /locus_tag="OQQ19_003523"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706957.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase ClsC"
                     /protein_id="HCS1805011.1"
                     /translation="MMKKTPTSTKDSLPNKEMNDLPRLASAVLPLCSQHPGQCGLFPL
                     EKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDDN
                     NTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVV
                     TLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDV
                     PEGEMADRIELPASWHNDAMTHRYLRQMESSPFINHLVDGTLPLIWAKTRLLSDDPAK
                     GEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTN
                     SLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKT
                     FSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQYDAAWQLRLDR
                     WGRINWVDRHAKKEIILKKEPATSFWKRVMVRLASILPVEWLL"
     gene            complement(2693..3850)
                     /gene="mdoC"
                     /locus_tag="OQQ19_003524"
     CDS             complement(2693..3850)
                     /gene="mdoC"
                     /locus_tag="OQQ19_003524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706958.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis protein MdoC"
                     /protein_id="HCS1805012.1"
                     /translation="MNPVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEP
                     SLWLTLFNDFIHSFRMLVFFVISGYFSYMLFLRYPLKKWWKVRVERVGIPMLTAIPLL
                     TLPQFIMLQYVKGKAESWPGLSLYDKYNTLAWELISHLWFLLVLVVMTTLCVWIFKRI
                     RNNLENSDKTNKKFSMVKLSVIFLCLGIGYAVIRRTIFIVYPPILSNGMFNFIVMQTL
                     FYLPFFILGALAFIFPHLKALFTTPSRGCTLAAALAFVAYLLNQRYGSGDAWMYETES
                     VITMVLGLWMVNVVFSFGHRLLNFQSARVTYFVNASLFIYLVHHPLTLFFGAYITPHI
                     TSNWLGFLCGLIFVVGIAIILYEIHLRIPLLKFLFSGKPVVKRENDKAPAR"
     gene            4244..5779
                     /gene="mdoG"
                     /locus_tag="OQQ19_003525"
     CDS             4244..5779
                     /gene="mdoG"
                     /locus_tag="OQQ19_003525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis protein MdoG"
                     /protein_id="HCS1805013.1"
                     /translation="MMKMRWLSAAVMLTLYTSSSWAFSIDDVAKQAQSLAGKGYEAPK
                     SNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATA
                     VKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVI
                     GAGQVYGLSARGLAIDTALPSGEEFPRFKEFWIERPKPTDKRLTIYALLDSPRATGAY
                     KFVVMPGRDTVVDVQSKIYLRDKVGKLGGAPLTSMFLFGPNQPSPANNYRPELHDSNG
                     LSIHAGNGEWIWRPLNNPKHLAVSSFSMENPQGFGLLQRGRDFSRFEDLDDRYDLRPS
                     AWVTPKGEWGKGSVELVEIPTNDETNDNIVAYWTPDQLPEPGKEMNFKYTITFSRDED
                     KLHAPDNAWVQQTRRSTGDVKQSNLIRQPDGTIAFVVDFTGAEMKKLPEDTPVTAQTS
                     IGDNGEIVESTVRYNPVTKGWRLVMRVKVKDAKKTTEMRAALVNADQTLSETWSYQLP
                     ANE"
     gene            5772..8315
                     /gene="mdoH"
                     /locus_tag="OQQ19_003526"
     CDS             5772..8315
                     /gene="mdoH"
                     /locus_tag="OQQ19_003526"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis glucosyltransferase MdoH"
                     /protein_id="HCS1805014.1"
                     /translation="MNKTTEYIDAMPIAASEKAALPKTDIRAVHQALDAEHRTWARED
                     DSPQGSVKARLEQAWPDSLADGQLIKDDEGRDQLKAMPEAKRSSMFPDPWRTNPVGRF
                     WDRLRGRDVTPRYLARLTKEEQESEQKWRTVGTIRRYILLILTLAQTVVATWYMKTIL
                     PYQGWALINPMDMVGQDLWVSFMQLLPYMLQTGILILFAVLFCWVSAGFWTALMGFLQ
                     LLIGRDKYSISASTVGDEPLNPEHRTALIMPICNEDVNRVFAGLRATWESVKATGNAK
                     HFDVYILSDSYNPDICVAEQKAWMELIAEVGGEGQIFYRRRRRRVKRKSGNIDDFCRR
                     WGSQYSYMVVLDADSVMTGDCLCGLVRLMEANPNAGIIQSSPKASGMDTLYARCQQFA
                     TRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIEHCALAPLPGEGSFAGSILSHDF
                     VEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRDRRWCHGNLMNFRLFLVKGMHP
                     VHRAVFLTGVMSYLSAPLWFMFLALSTALQVVHALTEPQYFLQPRQLFPVWPQWRPEL
                     AIALFASTMVLLFLPKLLSILLIWCKGTKEYGGFWRVTLSLLLEVLFSVLLAPVRMLF
                     HTVFVVSAFLGWEVVWNSPQRDDDSTSWGEAFKRHGSQLLLGLVWAVGMAWLDLRFLF
                     WLAPIVFSLILSPFVSVISSRATVGLRTKHWKLFLIPEEYSPPQVLVDTDRFLEMNRQ
                     RSLDDGFMHAVFNPSFNALATAMATARHRASKVLEIARDRHVEQALNETPEKLNRDRR
                     LVLLSDPVTMARLHFRVWNSPERYSSWVSYYEGIKLNPLALRKPDAASQ"
BASE COUNT         2133 a         2005 c         2212 g         2105 t
ORIGIN      
        1 tccctgcgcg aaggcggttc agggcaaagt cagacgaagc aagaaaagac cctctcattg
       61 cctgctaatc aacctattgc tttgacgaag ttgagtttaa atatttcccc ggaagatcgg
      121 gtgaaaatag ttgttactgt ttctgatgga caggcacttc atttatcaca acaatggccg
      181 ccctcttcag aaaagtctta atttgttgaa atgtcgagca taagatgaat ctggagagaa
      241 tggtctgctg cgaatcagcc aacctgaaag tatggataac acaaccctca aggatgacta
      301 atcattgagg aaatagaata aatgttcaga ccttttttaa actctcttat gctcggcagt
      361 ttgttttttc cttttattgc catcgcagga agcaccgcgc aagggggcgt gatccatttt
      421 tatggccaaa ttgtggaacc ggcatgtgac gtcagcaccc agtcatcacc cgtagaaatg
      481 aactgcccac agaatggttc tgttccggga aaaacctatt ccagcaaagc gttaatgagc
      541 ggcaatgtca aaaacgcgca agtagcctca gtaaaagtgc agtatattga taaacagaaa
      601 aagctggctg taatgaacat cgaatataac taagtttctg aacaacgcac gttgctgagt
      661 agaaaaatgc gatttaacca aaaagcctgc tgtacactta agaaacaaga aggtgttaag
      721 gaggcgttat gaaaacgcgt attcatgttg tgcagggtga tattaccaaa ctggccgttg
      781 atgtgattgt gaatgcggct aatccgtcat taatgggagg cggcggcgtc gatggggcca
      841 ttcatcgcgc agcgggtccg gccctgctgg atgcctgttt aaaagtcagg caacagcagg
      901 gcgattgccc tacggggcat gccgttatta cgcttgcagg cgatcttccc gctaaagccg
      961 tagtacacac cgtcgggcca gtctggcgtg gtggtgaaca aaacgaagac cagcttttgc
     1021 aggatgccta tctcaatagt ctgcgactgg tggcggcaaa cagctatacg tcagtggcat
     1081 ttcctgcaat cagtactggg gtttatggtt accctcgtgc ggcagcggct gaaatcgcag
     1141 taaaaaccgt ttcagaattt attacccgtc acgctttacc cgaacaggta tactttgtct
     1201 gttatgatga agaaaacgcc cacctctacg aaagactcct tacccaacaa ggagatgaat
     1261 gatttgcccc ggctggcgag cgcggtgctg ccactgtgtt cgcaacatcc cggtcagtgt
     1321 ggtcttttcc ctctggagaa aagtctggat gcgtttgccg cccggtatcg tctggccgaa
     1381 atggcagagc atacgctgga tgttcagtat tacatctggc aggacgatat gtcgggtcgg
     1441 ttactgtttt ccgccctgtt agccgcagca aagcgtggcg ttcgcgtccg tttgttgctg
     1501 gacgacaaca atacgcccgg acttgacgat attttacgct tgcttgacag ccatccccgc
     1561 attgaagtcc ggctttttaa tcctttctcg tttcgcttgc tgcgtccgct tggttatatc
     1621 accgactttt cccgtctcaa tcgccgtatg cacaataaaa gtttcactgt cgatggcgtg
     1681 gttaccttgg tgggaggacg aaatattggt gatgcctatt ttggggcagg ggaagagcca
     1741 cttttttcgg atttagatgt tatggcaata ggacccgtgg tagaggacgt tgccgatgat
     1801 ttcgcccgct actggtattg caaatcggtt tcacccttac agcaggtgct ggatgtcccg
     1861 gaaggtgaaa tggcggatcg catcgagtta cccgcctcct ggcataacga tgccatgacg
     1921 catcgttact tacgccaaat ggaatccagt ccgtttataa atcatctggt tgatggaacg
     1981 ttgccgctta tctgggcgaa aacacgttta ttaagtgatg atccggcgaa aggggagggc
     2041 aaggcaaaac ggcattcact gttaccgcag cgcctgttcg atatcatggg ctcacccagt
     2101 gaacgcatcg atattatctc ttcctatttt gtaccgacac gcgcaggtgt ggcgcaactc
     2161 ttacggatgg tgagaaaagg ggtaaagatt gcgatcctaa ccaattctct tgccgctaac
     2221 gatgttgctg tcgtccatgc cggatacgcg cgctggcgca aaaaattgct ccgctatggc
     2281 gtggaattat atgaactcaa gccgacgcgt gaacaaagta gtacgttaca cgatcgcggc
     2341 ataaccggta attccggtgc cagcctgcat gctaaaacct ttagcatcga tggtaaaacg
     2401 gtgtttatcg gctctttcaa tttcgatcca cgttcgacat tgctcaatac tgaaatgggc
     2461 ttcgtgatag agagcgaaac gctggcacag ttaattgata aacgctttat acagagccag
     2521 tatgatgcgg cctggcagct ccgtctggac aggtggggac ggatcaactg ggttgatcgt
     2581 catgcaaaga aagagattat tctcaaaaaa gaacccgcca ccagtttctg gaagcgggtt
     2641 atggtcagac tggcgtcgat attgcccgtg gaatggttat tgtaaatgtg gcttaacggg
     2701 ctggtgcttt atcgttctca cgcttaacaa ccggtttacc agaaaacaaa aacttcagta
     2761 acgggatgcg taaatgaatt tcatacagaa ttatcgcaat ccctactacg aatatcaggc
     2821 cacagagaaa accaagccag ttggaggtga tgtgcggtgt aatgtatgcg ccgaaaaaca
     2881 gcgttaacgg gtggtgaacc agatagataa atagcgatgc gttaacaaag taagtcaccc
     2941 gcgctgactg gaagttaagc aaacggtggc caaaggagaa gaccacattc accatccaca
     3001 gaccgaggac catggtgatc accgactcgg tttcgtacat ccaggcatcg ccactgccat
     3061 agcgttggtt gagtaaataa gcgacaaatg ccaatgctgc tgcaagggta cagccacgag
     3121 acggcgtggt aaacaaggct ttaagatgag ggaaaatgaa agccagtgca ccgaggataa
     3181 agaacggcaa ataaaatagc gtttgcatga caataaaatt gaacatgcca ttactcagaa
     3241 tgggcggata cacaataaaa atcgttcttc ttattaccgc atagccgatg ccgaggcata
     3301 aaaaaatcac cgatagtttt accatcgaga attttttatt cgttttatca gaattttcta
     3361 aattatttct gatgcgttta aatatccata cgcacagcgt cgtcatgact actaacacca
     3421 gtaaaaacca caggtgtgat attaattccc aggccaacgt attatatttg tcatacaatg
     3481 acagcccagg ccaactttcc gctttccctt tgacgtattg cagcataata aattgcggca
     3541 atgtcagtaa ggggatggct gttaacatcg ggatacctac acgttcgaca cgtactttcc
     3601 accatttttt caagggatag cgtaaaaaaa gcatgtagga aaagtagccg gatataacga
     3661 aaaataccag catgcggaac gagtggatga agtcattaaa aagggtcagc cacaatgacg
     3721 gttcggcgct attcacatgc catgtatggc tcgaatagat taaagaaata tgaaaaggga
     3781 tccctaacaa catcagccag gcgcggatgg agtcgaggaa atattcacgt tgcgcgggta
     3841 ctggattcat atatggttaa ctaatctcgg atttttcgtc ttatccctgt cgggttatgc
     3901 ctttaggctt gttgccatag cgacaccgac ctgaccgcgc caggcgcagg cttcaaggtt
     3961 tttatgcata gcataatcgc taccactaac cagaatggaa gcgtctgtaa gacggttgat
     4021 aaataaaatt gctggcaaac cctacacgaa gtcgatgctt ctgtctttag gagaagcacg
     4081 gaaagtgaaa acggttgcaa tcaggtgctt aatccatgag ccagcgtgct gaacgatacc
     4141 gggattctgt tgtcggaatg gctggttatc cattaaaatg gatcggatcg atataagcac
     4201 acaaaggggg aagtgcttac taattatgaa acataaacta caaatgatga aaatgcgttg
     4261 gttgagtgct gcagtaatgt taaccctgta tacatcttca agctgggctt tcagtattga
     4321 tgatgtcgca aagcaagctc aatccttagc cgggaaaggc tatgaggcgc ccaaaagcaa
     4381 cttgccctcc gttttccgcg atatgaaata cgcggactat cagcagatcc agtttaatca
     4441 tgacaaagcg tactggaaca atctgaagac cccattcaaa ctcgagttct accatcaggg
     4501 tatgtacttc gataccccgg tcaaaataaa tgaagtgact gccaccgcag tcaaacgaat
     4561 caaatacagc ccggattatt tcactttcgg cgatgttcag catgacaaag acacggtaaa
     4621 agaccttggt tttgccggtt ttaaagtgct ttacccgatc aacagcaaag ataaaaacga
     4681 tgaaatcgtc agcatgctcg gggccagcta tttccgcgtg attggtgcag gtcaggttta
     4741 tggcctttct gcccgcggcc tggcaattga taccgccttg ccatcgggtg aagaatttcc
     4801 acgcttcaaa gagttctgga tcgagcgtcc aaaaccgact gataaacgtt taaccattta
     4861 tgcattgctt gactcgccgc gcgcgacagg tgcttacaaa ttcgtggtta tgccagggcg
     4921 tgacacggtt gtggatgtgc agtcgaaaat ctatctgcgc gataaagtcg gcaaactggg
     4981 gggtgcaccg ttaaccagta tgttcctgtt tgggccgaac caaccgtcgc ctgcaaataa
     5041 ctatcgtccg gagttgcacg actctaacgg tctctctatc catgccggta atggcgaatg
     5101 gatctggcgt ccgttgaata acccgaaaca tttagcggtt agcagcttct cgatggagaa
     5161 cccgcaaggc ttcggtctgt tgcagcgcgg tcgtgatttc tcccgctttg aagatctcga
     5221 tgatcgttac gatcttcgtc caagcgcatg ggtgactccg aaaggggagt ggggtaaagg
     5281 cagcgttgag ctggtggaaa ttccaaccaa cgatgaaacc aacgataaca tcgtcgctta
     5341 ctggacgccg gatcagctgc cggagccggg taaagagatg aactttaaat acaccatcac
     5401 cttcagccgt gatgaagaca aactgcatgc gccagataac gcatgggtgc aacaaacgcg
     5461 tcgttcaacg ggggatgtga agcagtcgaa cctgattcgc cagcctgacg gtactatcgc
     5521 ctttgtggtc gattttaccg gcgcagagat gaaaaaactg ccagaggata ccccggtcac
     5581 agcgcaaacc agcattggtg ataatggtga gatagttgaa agcacggtgc gctataaccc
     5641 ggttaccaaa ggctggcgtc tggtgatgcg tgtgaaagtg aaagatgcca agaaaaccac
     5701 tgaaatgcgt gctgcgctgg tgaatgccga tcagacgttg agtgaaacct ggagctacca
     5761 gttacctgcc aatgaataag acaactgagt acattgacgc aatgcccatc gccgcaagcg
     5821 agaaagcggc attgccgaag actgatatcc gcgccgtaca tcaggcgctg gatgccgaac
     5881 accgcacctg ggcgcgggag gatgattccc cgcaaggctc ggtaaaggcg cgtctggaac
     5941 aagcctggcc agattcactt gctgatggac agttaattaa agacgacgaa gggcgcgatc
     6001 agctgaaggc gatgccagaa gcaaaacgct cctcgatgtt tcccgacccg tggcgtacca
     6061 acccggtagg ccgtttctgg gatcgcctgc gtggacgcga tgtcacgccg cgctatctgg
     6121 ctcgtttgac caaagaagag caggagagcg agcaaaagtg gcgtaccgtc ggtaccatcc
     6181 gccgttacat tctgttgatc ctgacgctcg cgcaaactgt cgtcgcgacc tggtatatga
     6241 agaccattct tccttatcag ggttgggcgc tgattaatcc tatggatatg gttggtcagg
     6301 atttgtgggt ttcctttatg cagcttctgc cttatatgct gcaaaccggt atcctgatcc
     6361 tctttgcggt actgttctgt tgggtgtccg ccggattctg gacggcgtta atgggcttcc
     6421 tgcaactgct tattggtcgc gataaataca gtatatctgc gtcaacagtt ggcgatgaac
     6481 cattaaaccc ggagcatcgc acggcgttga tcatgcctat ctgtaacgaa gacgtgaacc
     6541 gtgtttttgc tggcctgcgt gcaacgtggg aatcagtaaa agccaccggg aatgccaaac
     6601 actttgatgt ctacattctt agtgacagtt ataacccgga tatctgcgtc gcagagcaaa
     6661 aagcctggat ggagcttatc gctgaagtcg gtggcgaagg tcagattttc tatcgccgcc
     6721 gccgtcgccg cgtgaagcgt aaaagcggta atatcgatga cttctgccgt cgctggggca
     6781 gccagtacag ctacatggtg gtgctggatg ctgactcggt aatgaccggt gattgtttgt
     6841 gcgggctggt gcgcctgatg gaagccaacc cgaacgccgg gatcattcag tcgtcgccga
     6901 aagcgtccgg tatggatacg ctgtatgcgc gctgtcagca gttcgcgacc cgcgtgtatg
     6961 ggccactgtt tacagccggt ttgcacttct ggcaacttgg cgagtcgcac tactggggac
     7021 ataacgcgat tatccgcgtg aaaccgttta tcgagcactg cgcactggct ccgctgccgg
     7081 gcgaaggttc ctttgccggt tcaatcctgt cacatgactt tgtagaagcg gcgttgatgc
     7141 gccgtgcagg ttggggggtc tggattgctt acgatctccc gggttcttat gaagaattac
     7201 cgcctaactt gcttgatgag ctaaaacgtg accgccgctg gtgccacggt aacctgatga
     7261 acttccgtct gttcctggtg aagggtatgc acccggttca ccgtgcggtg ttcctgacgg
     7321 gcgtgatgtc ttatctctcc gctccgctgt ggtttatgtt cctcgcgctc tctactgcat
     7381 tgcaggtagt acatgcgttg accgaaccgc aatacttcct gcaaccacgg cagttgttcc
     7441 cggtgtggcc gcagtggcgt cctgagctgg cgattgcact ttttgcttcg actatggtgc
     7501 tgttgttcct gccgaagtta ttgagcattt tgcttatctg gtgcaaagga acgaaagaat
     7561 acggcggctt ctggcgcgtt acattatcgt tgctactgga agtgcttttt tccgtgctgc
     7621 tggctccggt acgcatgctg ttccatacgg tcttcgttgt cagcgcgttc cttggctggg
     7681 aagtggtgtg gaattcaccg cagcgtgatg atgactccac ttcctggggt gaagcgttca
     7741 aacgccacgg ctcacagctg ctgttagggt tagtgtgggc tgttgggatg gcgtggctgg
     7801 atctgcgttt cctgttctgg ctggcaccga ttgtcttctc gttgatcctg tcaccgtttg
     7861 tttcggtgat ttccagccgt gccaccgttg gtctgcgaac caaacactgg aaactgttcc
     7921 tgatcccgga agagtattca ccgccgcagg tgctggttga taccgatcgc ttccttgaga
     7981 tgaatcgtca acgctccctt gatgatggtt ttatgcacgc ggtgtttaac ccgtcattta
     8041 acgctctggc aaccgcaatg gcgaccgcgc gtcaccgcgc cagtaaggtg ctggaaatcg
     8101 cccgtgaccg ccacgttgaa caggcgctta acgagacgcc agagaagctg aatcgcgatc
     8161 gtcgcctggt gctgctaagc gatccggtga cgatggcccg tctgcatttc cgtgtctgga
     8221 attccccgga gagatattct tcatgggtga gttattacga agggataaag ctcaatccac
     8281 tggcattgcg taaaccggat gcggcttcgc aataaaaacg tagttgcctg atgcgctacg
     8341 cttatcaggc ctacatcgtt cctgcaattt attgattttg caagattttg taggttgggt
     8401 aaggcgttca cgccgcatcc ggcaaaaaca acgagccaat aaaaataccg gcgtt
//
LOCUS       DAJVSY010000166         8315 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.168, whole genome shotgun sequence.
ACCESSION   DAJVSY010000166 DAJVSY010000000
VERSION     DAJVSY010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8315)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8315)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8315
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.168"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(311..889)
                     /gene="mocA"
                     /locus_tag="OQQ19_003527"
     CDS             complement(311..889)
                     /gene="mocA"
                     /locus_tag="OQQ19_003527"
                     /EC_number="2.7.7.76"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor cytidylyltransferase"
                     /protein_id="HCS1805015.1"
                     /translation="MSAIDCIITAAGLSSRMGQWKMMLPWQQGTILDTSIKNALQFCS
                     RIILVTGYRGNELHERYVNQSNITIIHNPDYAQGLLTSVKAAVPAVQTEHCFLTHGDM
                     PTLTIDIFRKIWSLRNDGAILPLHNGIPGHPILVSKPCLMQAIKRPNITNMRQALLMG
                     AHYSVEVENAEIILDIDTPDDFITVQKRYTKI"
     gene            992..1762
                     /gene="yqeC"
                     /locus_tag="OQQ19_003528"
     CDS             992..1762
                     /gene="yqeC"
                     /locus_tag="OQQ19_003528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311776.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative selenium-dependent hydroxylase
                     accessory protein YqeC"
                     /protein_id="HCS1805016.1"
                     /translation="MKSIVDPSALFIDLGAQKRPTVISVVGAGGKTSLLFWLAELLQA
                     SGRRVLITTTTHMFMPTSHWPVVFCRDPAMLPHASLTSPISFCFHSWKANQGKVQGFT
                     PEAIDALVQRPECDVILIEADGSRAMPLKAPDEHEPCIPKSSCCVIAVMGGHILGAKV
                     STENVHRWSQFADITGLTPDATLQLSDLVALVRHPQGAFKNVPQGCRRVWFINRFSQC
                     ENAIAQSELLQPLQQHDVEAIWLGDIQEHPAIARRFVN"
     gene            1810..3435
                     /locus_tag="OQQ19_003529"
     CDS             1810..3435
                     /locus_tag="OQQ19_003529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF2563 family selenium-dependent molybdenum
                     hydroxylase system protein"
                     /protein_id="HCS1805017.1"
                     /translation="MNIFTEAAKLEEQNCPFAMAQIVDSRGSTPRHSAQMLVRADGSI
                     VGTIGGGMVERKVIEESLQALQERKPRLFHGRMARNGADAVGSDCGGAMSVFISVHGM
                     RPRLVLIGAGHVNRAIAQSAALLGFDIAVADIYRESLNPELFPPSTTLLHAESFGAAV
                     EALDIRPDNFVLIATNNQDREALDKLIEQPIAWLGLLASRRKVQLFLRQLREKGVAEE
                     HIARLHAPVGYNIGAETPQEIAISVLAEILQVKNNAPGGLMMKPSHPSGHQLVVIRGA
                     GDIASGVALRLYHAGFKVIMLEVEKPTVIRCTVAFAQAVFDGEMTVEGVTARLATSSA
                     EAMKLTERGFIPVMVDPACSLLDELKPLCVVDAILAKQNLGTRADMAPVTIALGPGFT
                     AGKDCHAVIETNRGHWLGQVIYSGCAQENTGVPGNIMGHTTRRVIRAPAAGIMRSNVK
                     LGDLVKEGDVIAWIGEHEIKAPLTGMVRGLLNDGLAVVGGFKIGDIDPRGETADFTSV
                     SDKARAIGGGVLEALMMLMHQGVKATKEVLEVA"
     gene            complement(3476..4408)
                     /gene="arcC"
                     /locus_tag="OQQ19_003530"
     CDS             complement(3476..4408)
                     /gene="arcC"
                     /locus_tag="OQQ19_003530"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HCS1805018.1"
                     /translation="MSKKIVLALGGNALGDDLAGQMKAVKITSQAIVDLIAQGHEVIV
                     THGNGPQVGMINQAFEAAAKTEAHSPMLPMSVCVALSQGYIGYDLQNVLREELLSRGI
                     NKPVATLVTQVEVDANDPAFLNPTKPIGSFFTEQEAEQLTKQGYTLKEDAGRGYRRVV
                     ASPKPVDIIEKETVKALVDAGQVVITVGGGRIPVIREGNHLRGASAVIDKDWASARLA
                     EMIDADMLIILTAVEKVAINFGKENEQWLDRLSLSDAERFIEEGHFAKGSMLPKVEAA
                     ASFARSRAGREALITVLSKAKEGIEGKTGTVICQ"
     gene            complement(4456..5841)
                     /gene="hyuA"
                     /locus_tag="OQQ19_003531"
     CDS             complement(4456..5841)
                     /gene="hyuA"
                     /locus_tag="OQQ19_003531"
                     /EC_number="3.5.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311773.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-phenylhydantoinase"
                     /protein_id="HCS1805019.1"
                     /translation="MRVLIKNGTVVNADGQAKQDLLIESGIVRQLGNNISPQLPYEEI
                     DATGCYVFPGGVDVHTHFNIDVGIARSCDDFFTGTRAAACGGTTTIIDHMGFGPNGCR
                     LRHQLEVYRGYAAHKAVIDYSFHGVIQHINHAILDEIPMMVEEGLSSFKLYLTYQYKL
                     NDDEVLQALRRLHESGALTTVHPENDAAIASKRAEFIAAGLTAPRYHALSRPLECEAE
                     AIARMINLAQIAGNAPLYIVHLSNGLGLDYLRLARANHQPVWVETCPQYLLLDERSYD
                     TEDGMKFILSPPLRNVREQDKLWCGISDGAIDVVATDHCTFSMAQRLQISKGDFSRCP
                     NGLPGVENRMQLLFSSGVMTGRITPERFVELTSAMPARLFGLWPQKGLLAPGSDGDVV
                     IIDPRQSQQIQHRHLHDNADYSPWEGFTCQGAIVRTLSRGETIFCDGTFTGKAGRGRF
                     LRRKPFVPPVL"
     gene            complement(5894..6934)
                     /locus_tag="OQQ19_003532"
     CDS             complement(5894..6934)
                     /locus_tag="OQQ19_003532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgeY family selenium metabolism-linked
                     hydrolase"
                     /protein_id="HCS1805020.1"
                     /translation="MAKNIPFKLILEKAKDYQADMTRFLRDMVAIPSESCDEKRVVHR
                     IKEEMEKVGFDKVEIDPMGNVLGYIGHGPRLVAMDAHIDTVGIGNIKNWDFDPYEGME
                     TDELIGGRGTSDQEGGMASMVYAGKIIKDLGLEDEYTLLVTGTVQEEDCDGLCWQYII
                     EQSGIRPEFVVSTEPTDCQIYRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPIL
                     GELQELSQRLGYDEFLGKGTLTVSEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGAL
                     DEIRALPAVQKANAVVSMYNYDRPSWTGLVYPTECYFPTWKVEEDHFTVKALVTCAAM
                     YAAIPLSWLATE"
     gene            complement(6992..8188)
                     /gene="dpaL"
                     /locus_tag="OQQ19_003533"
     CDS             complement(6992..8188)
                     /gene="dpaL"
                     /locus_tag="OQQ19_003533"
                     /EC_number="4.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopropionate ammonia-lyase"
                     /protein_id="HCS1805021.1"
                     /translation="MSVFSLKIDIADNKFFNGETSPLFSQSQAKLARQFHQKIAGYRP
                     TPLCALDDLANLFGVKKILVKDESKRFGLNAFKMLGGAYAIAQLLCEKYHLDIETLSF
                     EHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAE
                     CIVTDMNYDDTVRLTMQHAQQHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMR
                     EMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIV
                     NVGGDMATIMAGLACGEPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRI
                     ISGESGAVGLGVLAAVHYHPQRQSLMEKLALNKDAVVLVISTEGDTDVKHYREVVWEG
                     KHAVAP"
BASE COUNT         1961 a         2013 c         2179 g         2162 t
ORIGIN      
        1 tagcttatac agatatcatt gagtgaccgg tgttgagaaa tccggtggtt tagggggata
       61 gagcaacaat cgcaccactc ttgccaggtt tggcgggaaa tataaaaaaa tgtgaggcgg
      121 ctcgaaactt aagggctttt tgtgaatgaa ctcacaggtg ctaaatgaga attaaaatca
      181 ctcctgaaaa ttattattgc cagcccatat atcacttttt ctcttttctc aaaatcagtg
      241 attccttatc attatgataa agagtgctgg agggattaaa tatttgaacg caatcgttta
      301 actacgtttt ttaaatttta gtataccttt tttgcactgt aataaagtcg tccggagtat
      361 caatatctaa aattatttct gcattttcta cttcgacgga ataatgagct cccataagga
      421 gtgcctgacg catattggtg atattggggc gcttgattgc ctgcatcagg catggttttg
      481 acactaaaat cggatggccg gggatgccat tatggagtgg cagtattgcg ccatcatttc
      541 gtaacgacca gatttttctg aaaatatcga tggtgagggt tggcatgtca ccgtgggtga
      601 gaaaacaatg ttctgtttgc actgcgggta ctgcggcctt tactgatgtt agtaaaccct
      661 gcgcataatc tgggttgtgg ataatagtga tattgctctg gttcacataa cgttcgtgca
      721 gttcattacc acgatagccg gtgactaaaa taattcggct acaaaactgc aacgcatttt
      781 tgatacttgt atcaagaatt gtcccctgtt gccagggtaa catcattttc cattgcccca
      841 ttcttgatga taatccggca gcggtaatta tacagtcgat ggctgacata gtggttccat
      901 tatttatagg ggctaataac gcctgataat tgcgttactt cctgatggat taagttgggg
      961 ataatttatc ccagagaggt cataaagact cgtgaaaagt atagttgacc catcggcatt
     1021 attcattgat ttaggtgcgc agaaacgtcc cactgtgatt tctgttgttg gtgctggggg
     1081 gaaaaccagc ttgctttttt ggctggcaga actgctccag gctagcggca ggcgtgtgtt
     1141 aatcacgacg acaacacata tgtttatgcc aacgtctcac tggcccgtgg ttttctgtcg
     1201 tgatcccgcc atgcttcctc atgcgtctct tacatccccc atttcatttt gttttcacag
     1261 ctggaaagcg aaccagggaa aagtgcaggg atttacgcca gaagcgattg atgcactggt
     1321 gcaacgacca gagtgtgacg taattctcat tgaagcagat ggctcgcgtg caatgccgtt
     1381 aaaagcgcct gatgagcacg aaccttgcat acccaaaagc agttgctgcg tgattgctgt
     1441 gatgggagga catattttgg gcgcgaaagt gagcacagaa aatgtccatc gctggtcgca
     1501 gtttgctgat attactgggt taacacctga tgcaaccttg caactgagcg atctcgttgc
     1561 gctggttcgc caccctcagg gggcgtttaa aaacgtaccg caaggttgtc ggcgagtctg
     1621 gttcattaac cgtttttctc aatgtgagaa tgcgattgca caaagcgagc tccttcaacc
     1681 gctgcaacaa cacgacgtag aggcaatctg gctaggcgat atacaagaac atcctgcaat
     1741 cgcgcgcaga tttgtgaatt agcggcccgg gtattccggg ttactgaaag gatatccatt
     1801 gaggttggta tgaatatttt cacagaggct gcaaaactcg aagagcaaaa ttgtccgttt
     1861 gcgatggcgc aaattgttga tagccgaggc tcgactcccc gccattctgc acaaatgtta
     1921 gtgcgcgccg atggttctat cgtcggtaca attggtggcg gaatggttga gcggaaggtg
     1981 attgaagagt cacttcaggc attgcaggaa cgtaagccgc gattattcca tggacgtatg
     2041 gctcgtaacg gtgcggatgc tgtcgggtca gattgtggag gtgcaatgtc agtatttatc
     2101 agcgtccatg gtatgcgtcc acgtctggtg ttgattggcg cggggcatgt caaccgggcg
     2161 atagcccaga gtgccgcgct attaggattt gatattgccg ttgccgatat ttatcgcgaa
     2221 agcctcaatc ctgaactatt cccaccatca accacgcttc tccatgctga gtcgtttggt
     2281 gcggcagtgg aagcactgga tattcgccct gataattttg tcctgattgc cacgaataat
     2341 caggatcgtg aagccctcga caaactcatt gaacagccca ttgcatggtt ggggttgctg
     2401 gcaagtcgcc gcaaggttca gcttttcctg cgtcaattgc gtgagaaagg cgtggctgaa
     2461 gaacatattg cccgtttaca tgcgcccgtt ggttacaaca taggtgcgga aacgccgcag
     2521 gagatcgcca tcagcgtgct ggcagaaata ttacaggtga aaaataacgc gccgggtggg
     2581 ctgatgatga aaccttctca tccttccgga caccagctgg tggtgattcg cggtgcggga
     2641 gatatcgcca gtggtgtggc gctacgtctg tatcatgcgg gttttaaagt gatcatgctg
     2701 gaagtggaaa aaccgacagt gattcgttgt accgtggcgt ttgcccaggc cgtgttcgat
     2761 ggcgaaatga cggtcgaagg cgtcactgct cgcctggcaa ccagctctgc ggaagcgatg
     2821 aaacttaccg aacgcggatt catccctgtg atggtagatc ccgcctgttc attgcttgat
     2881 gaactgaaac cgctttgcgt ggtggacgct attctggcga aacagaattt gggaacgcgg
     2941 gcagatatgg caccagtaac aatcgcgctt gggccgggct ttactgcagg gaaggattgt
     3001 catgcggtaa ttgaaacaaa tcgcgggcac tggctcggtc aggtgattta ctctggttgt
     3061 gcgcaggaga ataccggtgt tcctggcaat attatggggc ataccacccg acgggtgatc
     3121 cgtgctcctg ctgcaggcat tatgcgatcc aacgtgaaat taggcgatct ggtgaaagag
     3181 ggcgatgtga ttgcctggat tggtgagcat gaaattaaag caccgttgac ggggatggtg
     3241 cgtggcttgt tgaacgacgg cctggcagtg gttggtggtt ttaaaattgg tgatatcgat
     3301 cctcgtggtg aaaccgctga tttcaccagc gtttctgata aagcccgggc gattggcggc
     3361 ggcgtacttg aggcgttaat gatgttgatg catcagggcg tgaaagcgac aaaagaagtg
     3421 ctggaagtgg cttaaatgaa aatggccgga tggtattacc cacccggcct taaaattact
     3481 gacaaatcac cgttccggtt ttgccttcaa tcccttcttt cgctttgctc aatacggtaa
     3541 tcagtgcttc acgacctgcg cgagagcgag caaacgaggc ggcagcttcc actttaggca
     3601 gcatagaacc tttcgcaaaa tgaccttctt cgataaagcg ttcagcatca cttaatgaca
     3661 ggcgatcgag ccactgttca ttctctttac cgaagttaat ggccactttt tctaccgcag
     3721 tcagaatgat cagcatatcg gcatcaatca tttctgctaa acgggcgctg gcccagtctt
     3781 tatcgataac cgcgctggca ccacgcagat ggttaccttc acgaataaca gggatacgac
     3841 caccgccaac ggtgatcacc acctggcctg catctaccag agctttaaca gtttcttttt
     3901 caatgatatc aaccggtttt ggcgaggcaa caacacggcg atagccgcga ccagcatctt
     3961 ctttcagagt gtaaccctgt tttgtcagtt gctctgcttc ttgctcggta aagaacgaac
     4021 cgatcggctt ggtcgggttg aggaatgccg gatcgttagc gtcgacttcg acctgagtaa
     4081 ccagcgttgc tacaggttta ttaatgcccc gagaaagcag ttcttctctt aacacgtttt
     4141 gtagatcgta accaatataa ccctggctta aggcaacaca gacagacatc ggcagcattg
     4201 gcgagtgtgc ttcagttttt gcggcagctt caaaggcctg gttaatcatg cccacctgcg
     4261 gcccgttacc atgagtgacg ataacttcat gtccttgggc aattaaatca acaattgcct
     4321 gagaagtaat ttttaccgct ttcatttgtc cggccaggtc atcgcccagc gcattcccgc
     4381 ccagggcgag aacaattttc ttactcattt ttcctcactc atcattcttg attgtgtata
     4441 gatccctgac agtggttaga gcacgggagg gacaaacggt ttgcgtcgca ggaaacgacc
     4501 tcgcccggct ttgcctgtaa aggtgccgtc acagaaaatc gtttcaccac gggataaggt
     4561 tctgacaatc gcgccctgac aggtaaaacc ctcccatggc gagtagtcgg cgttgtcgtg
     4621 gagatggcga tgctgaattt gttggctctg acgtgggtcg ataatcacca cgtcgccatc
     4681 ggaaccgggc gctaataatc ctttttgcgg ccacaggcca aacagcctgg cgggcattgc
     4741 gctggttaat tcaacaaagc gttccggtgt tatacgtccc gtcatcacgc cactggaaaa
     4801 cagtaactgc atgcggtttt ccacaccggg taagccattt gggcagcgac tgaaatcgcc
     4861 tttagaaatt tgcaggcgtt gagccatcga gaaggtgcag tgatcggtcg ccaccacgtc
     4921 aatcgcacca tcgctgatgc cacaccacag tttgtcctgc tcgcgtacgt tacgcagcgg
     4981 tgggctaaga atgaacttca tgccatcttc tgtatcgtaa ctgcgttcgt ccaacaggag
     5041 atattgtggg caggtttcaa cccagactgg ctggtgattc gcacgggcaa gacgcagata
     5101 atccagacct aagccgttag acaggtgcac gatatagagc ggggcgttac cggcaatttg
     5161 tgccaggtta atcatgcggg cgatggcttc cgcttcgcat tccagagggc gactcaaggc
     5221 atgatagcgc ggcgcggtta accctgcggc gataaattcc gcccgcttgc tggcgatagc
     5281 cgcatcattt tccgggtgca cggtggtcag cgcgccggat tcatgcaagc ggcgtaatgc
     5341 ctgcaaaacc tcgtcatcgt tgagtttgta ttgataggtt aaatagagtt taaaactgct
     5401 cagtccttcc tcgaccatca tcgggatttc gtcgaggatt gcgtgattaa tgtgctggat
     5461 cacaccgtga aagctgtaat cgatgaccgc tttatgggcg gcataaccac gataaacctc
     5521 cagttgatgg cgtaaccgac agccgtttgg gccaaatccc atatggtcaa taatggttgt
     5581 tgtaccgcca cacgcagctg cgcgggtacc ggtaaaaaaa tcatcacaac tgcgcgcgat
     5641 gccgacatca atattgaaat gcgtatggac atccacgccg cctgggaaaa cgtaacagcc
     5701 agtggcatca atttcttcat acgggagctg cggcgaaata ttgttgccca actggcgaac
     5761 aatcccgctt tcaatcagca aatcctgttt ggcttgtcca tctgcgttaa cgacagtgcc
     5821 gtttttgatc aatacgcgca tagcaaactc caaaaaccct ccggcgaacc ggaggggaat
     5881 aagtgaagag taattactct gttgccagcc agcttaacgg gattgcagcg tacatcgcgg
     5941 cacaggtcac cagtgcttta acggtgaagt gatcttcttc cactttccag gtcgggaagt
     6001 agcattcggt tgggtaaacc aggccagtcc aggacggacg gtcgtagttg tacatagaaa
     6061 caaccgcgtt agctttctgt actgcaggca gggcgcggat ttcgtccagc gcgccttccc
     6121 aggtttcgcc ccaggtcaga cggcggtcaa tagagacggc gcagctatct gctacagcgc
     6181 aacggcttgg ggatgtgaag aagatttcag aaacggtgag ggtgcctttg ccgaggaatt
     6241 cgtcataacc cagacgttgg gagagttctt gtaattcgcc aagaatcgga cccattttga
     6301 aaatggcgtt gtcaccgcgt tctggcgcag aaccgtggca gctaacaccc tgaacatcaa
     6361 tacgaatttc catacgaccg cgctgaccac ggtatatctg gcagtcggtt ggttcggtac
     6421 tgaccacaaa ttccgggcga atgccggatt gttcaataat gtactgccag cacagaccgt
     6481 cgcagtcttc ttcctgcaca gtaccggtaa ccagcagggt atattcatct tccagaccga
     6541 ggtctttaat gattttaccg gcataaacca tagatgccat gccgccttcc tggtcggaag
     6601 taccgcgacc accgattagc tcatcagttt ccatgccttc gtacggatcg aagtcccagt
     6661 ttttgatgtt gccaatgccg acggtatcga tatgagcgtc cattgccacc agacgcgggc
     6721 cgtggccgat ataaccgaga acgttgccca tcgggtcgat ttcaacttta tcgaagccga
     6781 ctttttccat ctcttcttta atacgatgta ctacgcgttt ttcgtcgcag ctttcactgg
     6841 gaatagcaac catgtcgcgc aggaagcgag tcatgtccgc ctggtaatct tttgcttttt
     6901 caagaatcag tttgaatgga atattcttag ccattatttt tctccagatt ttttactccc
     6961 cgttttgcag ggagtagttc caatagggtg attaaggtgc tacagcgtgt ttgccttccc
     7021 agacaacttc gcggtagtgc ttcacgtcgg tgtcgccttc agtactgata accagcacta
     7081 cggcatcttt gttcagcgcc agtttttcca tcaggctttg acgttgcggg tgataatgaa
     7141 ccgctgcgag aacgcccaaa ccgacagcgc cggattcacc ggagatgatg cgcgggtcgt
     7201 tgccgtacgg attacccagc acgcgcatac ctaatgcggc aacgctgtcc tggcaggaga
     7261 tgaattgggt ggcgcagtta cgtaggattt cccagcccag cgggttaggt tcgccacagg
     7321 ccaggcccgc catgatggtg gccatatcac cgccaacgtt gacgatgtcg cctttgacgc
     7381 cggagcgata aatacagtca gctttgtcag gttcaacaat aatgctgtgc agattttgcg
     7441 ggctgtagac gtcgaccaga taacccagca caccaccggc cattgctccg acaccggctt
     7501 gcagcagaac gtgcgtcggg gttacgccca tttcacgcat ttgctcgacg gcttcatctg
     7561 ccagggttgc gtagccttgc atgatccagg ttgggatttt ggtgtaacct tcccatgccg
     7621 tgtcctgtac cacttcccag ccgtgctgct gcgcgtgttg catggtcagg cgaacggtat
     7681 cgtcatagtt catatccgtg acgatgcact cggcaccgag gttcagaatg gcgtcaacgc
     7741 gttcctgagc agaacctttc ggcatgtaaa tcaccgcatt ctgtccgagt tgctgtgctg
     7801 cccacgccac accgcgcccg tggttgccgt cggtggtggt cgcgaaagtc attttttcgc
     7861 cgatggcatt tttcaggtgc tcaaatgaca gcgtttcgat atcaagatga tatttttcac
     7921 acaataattg agcgatggcg tacgcaccgc caagcatttt gaaggcgttc agaccgaatc
     7981 gttttgattc gtctttgacg agaattttct tcacaccaaa aaggtttgcg agatcgtcca
     8041 gcgcacaaag cggtgttggg cgataaccag ctattttctg gtggaactgg cgcgccagtt
     8101 tggcctggct ttgcgaaaag agcggtgatg tttcgccgtt gaaaaatttg ttatcggcga
     8161 tatcaatctt caatgagaaa acggacatat cctatccttt tggcctctgg aaatagaggg
     8221 ccgaccagct gatcggcccg aggggttatt tcacgcgttc ttgcgcttct ttcagcagtt
     8281 gctcgagcag tgcacctggt ttggcgtatt tacgg
//
LOCUS       DAJVSY010000167         8312 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.169, whole genome shotgun sequence.
ACCESSION   DAJVSY010000167 DAJVSY010000000
VERSION     DAJVSY010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8312
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.169"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(95..1765)
                     /gene="hscC"
                     /locus_tag="OQQ19_003534"
     CDS             complement(95..1765)
                     /gene="hscC"
                     /locus_tag="OQQ19_003534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HscC"
                     /protein_id="HCS1805022.1"
                     /translation="MDNAELTIGIDLGTTNSLIAVWKDGAAQLIPNKFGEYLTPSIIS
                     MDENNHILVGKPAVSRRTSHPDKTAALFKRAMGSNTNWRLGSDTFNAPELSSLVLRSL
                     KEDAEEFLQRPIKDVVISVPAYFSDEQRKHTRLAAELAGLNAVRLINEPTAAAMAYGL
                     HTQQNTRSLVFDLGGGTFDVTVLEYATPVIEIHASAGDSFLGGEDFTHMLVDEVLKRA
                     EVARTTLNESELAALYACVEAAKCSNQSPLHIRWQYQEETRECEFYENELEDLWLPLL
                     NRLRVPIEQALRDARLKPSQIDSLVLVGGASQMPLVQRIAVRLFGKLPYQSYDPSTIV
                     ALGAAIQAACRLRSEDIEEVILTDICPYSLGVEVNRQGVSGIFSPIIERNTTVPVSRV
                     ETYSTMHPEQDSITVNVYQGENHKVKNNILVESFDVPLKKTGAYQSIDIRFSYDINGL
                     LEVDVLLEDGSVKSRVINHSPVTLSAQQIEESRTRLSALKIYPRDMLINRTFKAKLEE
                     LWARALGDEREEIGRVITDFDAALQSNDMARVDEVRRRASDYLAIEIP"
     gene            complement(1849..2784)
                     /gene="rihA"
                     /locus_tag="OQQ19_003535"
     CDS             complement(1849..2784)
                     /gene="rihA"
                     /locus_tag="OQQ19_003535"
                     /EC_number="3.2.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine-specific ribonucleoside hydrolase
                     RihA"
                     /protein_id="HCS1805023.1"
                     /translation="MALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEK
                     TLRNVLRMLTLLNRTDIPVAGGAVKPLMRELIIADNVHGESGLDGPALPEPTFAPQNC
                     TAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWT
                     PAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHIEDTERFRAIGNPVSTIVAE
                     LLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERWVGVETQGKYTQGMTVV
                     DYYYLTDNKPNATVMVDVDRQGFVDLLADRLKFYA"
     gene            complement(2902..3627)
                     /gene="gltL"
                     /locus_tag="OQQ19_003536"
     CDS             complement(2902..3627)
                     /gene="gltL"
                     /locus_tag="OQQ19_003536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020245804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter ATP binding
                     protein GltL"
                     /protein_id="HCS1805024.1"
                     /translation="MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLI
                     KTVNGLEPVQQGEITVDGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQ
                     VKVLKRDKAPAREKALKLLERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLF
                     DEPTSALDPEMINEVLDVMVELANEGMTMMVVTHEMGFARKVANRVIFMDEGKIVEDS
                     PKDAFFDDPKSDRAKDFLAKILH"
     gene            complement(3627..4301)
                     /gene="gltK"
                     /locus_tag="OQQ19_003537"
     CDS             complement(3627..4301)
                     /gene="gltK"
                     /locus_tag="OQQ19_003537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter permease
                     GltK"
                     /protein_id="HCS1805025.1"
                     /translation="MYEFDWSSIVPSLPYLLDGLVITLKITVTAVVIGILWGTMLAVM
                     RLSSFAPVAWFAKAYVNIFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKNDIRLISAMV
                     AFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLT
                     QGIVLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSY
                     LKRRTA"
     gene            complement(4301..5041)
                     /gene="gltJ"
                     /locus_tag="OQQ19_003538"
     CDS             complement(4301..5041)
                     /gene="gltJ"
                     /locus_tag="OQQ19_003538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter permease
                     GltJ"
                     /protein_id="HCS1805026.1"
                     /translation="MSIDWNWGIFLQQAPFGNTTYLGWIWSGFQVTIALSICAWIIAF
                     LVGSFFGILRTVPNRFLSGLGTLYVELFRNVPLIVQFFTWYLVIPELLPEKIGMWFKA
                     ELDPNIQFFLSSMLCLGLFTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVL
                     LPNAYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLA
                     YVLINAIIMLVMTLVERKVRLPGNMGGK"
     gene            complement(5211..6119)
                     /gene="gltI"
                     /locus_tag="OQQ19_003539"
     CDS             complement(5211..6119)
                     /gene="gltI"
                     /locus_tag="OQQ19_003539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter
                     substrate-binding protein GltI"
                     /protein_id="HCS1805027.1"
                     /translation="MQLRKPATAILALALSAGLAQADDAAPAAGSTLDKIAKNGVIVV
                     GHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLL
                     QNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFADLKDKAVVVTS
                     GTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKK
                     PDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIPP
                     KNLNMNFELSDEMKALFKEPNDKALN"
     gene            6574..>8312
                     /locus_tag="OQQ19_003540"
     CDS             6574..>8312
                     /locus_tag="OQQ19_003540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001276742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HCS1805028.1"
                     /translation="MSASSVKPLNVQLPAITLILFALCIGIFCYLAQWMSYEEVDQSA
                     LIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMFAFLVVGGVAEQILGKWRLLI
                     TWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGAAIATQLASGAGTYHKNQR
                     RVFSLLGMVALTLLYGARQTGIDNACHIGGLIAGGALGWLSARLSGQNRLVTEGGIIV
                     AGSLLLTGAIWLAQQQMDESVLQVRQSLREAFYPQEIEQERRQKKQQLAEERNALRET
                     LSAPVSREQASGDLLAEIADIHDMAISRDGNMLYAAIENTNSIVVFDLGQKKILHTFT
                     APIAKEKSVKHCGGCKDQGVRSLALSPDEKLIYATSFEANALSVINVATGEIIQSITT
                     GAHPDSLILSRDGTKAWVMNRTSNSVSAIDLVTYQHVADIPLEKYDGAGTSGKPGAWV
                     MALSPDERTLLVPGAGRGNIVRINTITHQKEDFPAGDARGTISAMRFRPENGEVIFAD
                     SQGISRISVGDQQASIMTQWCSRSVYSVEGISPDGQYLALVSYGLQGYVILLNINAGQ
                     IIGVYPASYVNHLR"
BASE COUNT         2076 a         2053 c         2076 g         2107 t
ORIGIN      
        1 atgctctcgg caaaatcgcg atgttgttta gttgacgatg tgttttttgc gccgatgccg
       61 gatgcagcgt ttacgccgca tccggcagcc gtgtttatgg gatctcaatg gctaaataat
      121 cgctcgcccg ccgccgaact tcatccacgc gggccatgtc gtttgactgt agcgccgcat
      181 caaaatcggt gatcacccgg ccaatctctt ctcgctcgtc acccagcgct cgcgcccaca
      241 actcttccag tttggcttta aaggtgcgat tgatgagcat atcgcgcgga taaattttca
      301 atgcggataa ccgcgtccga ctctcttcaa tctgctgcgc gctcaatgtt accgggctgt
      361 ggttaatcac tctggactta acgctgccgt cttccagaag cacgtcaact tcaagcaacc
      421 cgttgatatc ataactaaag cgaatatcaa tcgactgata agccccggtt ttcttcaacg
      481 gcacatcgaa ggattcaacc agaatgttat ttttaacttt gtggttttct ccctgataga
      541 cgttaaccgt aattgaatcc tgctccgggt gcatggtcga gtaagtttct acacgcgaca
      601 ccggtactgt ggtgtttcgt tcaataatcg gcgagaaaat gccggaaacg ccctggcggt
      661 taacttcaac gcccaacgag taagggcaaa tatcagtgag gattacctct tcaatatctt
      721 cactgcgtaa gcggcaggcg gcctggattg ctgcgcccag cgcgacaatg gtgctcggat
      781 cgtaactttg atacggtaat ttgccaaaca gacgcacggc gattcgctgc accagcggca
      841 tttgtgacgc gccgccaacc agcaccagac tgtcgatttg actcggcttc agacgcgcat
      901 cgcgcaacgc ctgttcaatc ggcactcgca agcgattgag cagcggcaac cacaaatctt
      961 ccagttcgtt ctcgtaaaat tcgcattccc gcgtttcttc ctgatactgc cagcgaatgt
     1021 gcaatggcga ttgattgcta cattttgccg cttccacaca ggcgtacaag gctgccagtt
     1081 cactctcgtt aagcgtggtc ctggcaactt ccgcgcgttt taaaacctca tcgaccagca
     1141 tatgggtaaa atcttcgcca ccgaggaagc tatcgccagc ggaggcgtga atttcaatca
     1201 ccggcgtggc gtactcaagc accgtaacgt caaacgtgcc gccaccgaga tcaaaaacca
     1261 gcgagcgggt attttgttgc gtatgcaggc catatgccat cgcagctgct gtgggttcat
     1321 taattaagcg taccgcattt aacccggcta actccgcagc taaacgggta tgcttgcgtt
     1381 gttcatcgct gaaataagcc ggaacggaga tcaccacatc tttaatcgga cgttgcagaa
     1441 attcttcggc atcttctttt aatgagcgta ataccaaaga ggacagttct ggcgcgttaa
     1501 atgtgtcgct gcctaaccgc cagttggtat tactgcccat tgcgcgttta aataacgctg
     1561 ccgttttatc cggatgcgaa gtacgccgtg atacagccgg ttttccgact aaaatatgat
     1621 tattttcatc catgctaatt atggatggtg ttaaatattc accgaactta tttggaatta
     1681 attgcgcggc accgtctttc cagacggcaa ttaaactatt ggtagtgccg agatcgatac
     1741 caatggtgag ttctgcatta tccattgcat ttatatcttg aaagaaaaag agataaacag
     1801 attaagacca cccaggtaac gcgtggtgat cttaatcaat gacgtgtgtt aagcgtaaaa
     1861 tttcagacga tcagccagta aatcaacaaa gccctgacga tcaacatcga ccattacagt
     1921 ggcattcggt ttattgtcag tcagataata ataatcaaca accgtcatac cctgggtata
     1981 tttcccctgt gtttccacgc caacccagcg ctcaacagtg gtaaacaact cgggtttcaa
     2041 cagccaggcg atggtgcatg ggtcatgcag cggtgcaccg acaaagcccc atttttcgtc
     2101 tttatgatat tcgaggaaga aatccagcag ttcggcaaca atggttgaaa cagggttgcc
     2161 aatcgcgcgg aaacgctcgg tgtcttcaat gtggatttgc gctttatgag taacatccag
     2221 accggccatc accactggga tccctgactg gaagacaatt tctgccgctt ccgggtcaac
     2281 gtaaatatta aattcagccg caggcgtcca gttaccaagc cccattgcgc cgcccataat
     2341 cacgatacgg gcaattttgc tatgcagttc cggatggcta ttgagcagca aggcaacgtt
     2401 agtttgcggt ccggtagaca caatcgtgac aggttccgca ctttcgcgca gcgttttcgc
     2461 catcagctct accgccgtac agttttgcgg tgcgaacgtc ggttccggta atgccgggcc
     2521 atccagaccg ctttcgccgt gcacattgtc cgcgataatc aactcacgca ttaacggttt
     2581 taccgcgccg cctgctaccg gaatatcggt gcgattaagc aaggtcagca tacgcagaac
     2641 attgcgtaag gttttttctg gtgtctggtt tccggcggaa gacgtaattg ctttgacatc
     2701 aagctctggt gaggcgaggg cgagaactat tgcgatagcg tcgtcatgac ctgggtcgca
     2761 atctaacaga attggcagtg ccattgttgc tccttgttgt gtgcttcttt gcgacaaggg
     2821 taacgccagg atgtaacaga tacgaggggc gaaacgataa agcgtgagat ggcgcgcact
     2881 tgggtatgcg cgccagagtg attaatgcag gattttcgcg aggaagtctt tcgcgcggtc
     2941 cgatttcgga tcatcgaaga aagcgtcttt cggcgagtct tcgacaattt taccctcgtc
     3001 cataaagatc acccgattcg ccactttgcg ggcaaagccc atttcgtggg tcaccaccat
     3061 catggtcatt ccttcgttcg ccagttccac catcacgtcc agcacttcgt tgatcatctc
     3121 cggatccagc gccgatgtcg gttcgtcgaa cagcatcgca ataggatcca tacacaacgc
     3181 gcgagcgatt gccacacgct gctgctgacc gccggaaagc tgcgccggaa atttattggc
     3241 atgtgcggaa agtcccacgc gctccagcaa tttcaatgct ttttcacgag cgggcgcttt
     3301 atcgcgttta agcactttca cctgcgccag agtcaggttt tcaataatcg acaaatgggg
     3361 gaacaactca aaatgctgga acaccatccc gacgcgggaa cgcagctttg ccagatcggt
     3421 tttcttgtca ttaaccacga taccatcgac ggtgatttca ccttgctgca ctggttcgag
     3481 gccgttgacg gttttaatca gcgttgattt gccggaacca gacgggccgc aaaccaccac
     3541 cacttcgcct tttttcactt cggttgagca gtcggtcagc acctgaaagt gaccatacca
     3601 ttttgaaaca tttttcaggg taatcattat gctgtccttc ttttcaagta gctgaccaac
     3661 aacgacgcgc taagactaat aacgaaataa acaaatccgg caaacaggat catctcaacc
     3721 tgcgtaccat cacgctcacc aatggttgag gcggtacgga agaaatcggc cagagataac
     3781 acatacacca gtgaggtatc ctggaacagt acgatgccct gagtgagcag aagcggcacc
     3841 atcgcgcgga acgcctgcgg cagaataatc agtttcatcg actgccagtg agtcattccc
     3901 aacgccagcg cggcgctcga ctgaccacga gaaatacttt gaataccagc acggataatc
     3961 tctgaatagt aggccgcttc aaacatcgaa aacgccacca tcgccgaaat taaacggata
     4021 tcattttttg gtgataatcc cagcacgttt tgcagaaaac ctggcacgat caggtaaaac
     4081 cacagcaaaa ccataactaa aggaatcgag cggaatatgt taacgtaggc tttggcaaac
     4141 cacgctacgg gcgcaaagct ggacaagcgc atcaccgcca gcatggtgcc ccacaaaata
     4201 ccaatcacga ctgccgtgac ggtgattttc agcgtgatca ccagcccgtc gagcagatat
     4261 ggcaaggaag ggacaatgga actccagtca aactcgtaca ttatttgccc cccatgttgc
     4321 caggcaggcg aactttacgt tcaaccagcg tcattaccag catgataatc gcgttaatca
     4381 acacatacgc cagcgtaata gcggtaaacg actcccaggc gtgggctgag taatcaagca
     4441 atttacccgc ctgcgccgcc atatccacca gaccaatagt cgaggcgatg gcggagtttt
     4501 tcaccaggtt catcatctcg gaagtcatcg gcgggacgat aacgcgataa gcattaggca
     4561 gcagtacgta tcgataagcc tgcggtagcg tcaggcccat cgccagcgcg gcattttttt
     4621 gcccacgcgg caacgactga atggcggcgc gtacctgttc gcaaacacgg gcggcggtaa
     4681 acagccccag gcagagcatg gatgaaagga aaaactgaat attgggatcc agctcggcct
     4741 taaaccacat gccgattttc tcaggcaaca gctccgggat caccagatac caggtaaaga
     4801 attgcacaat caacggcacg ttgcggaaca gttcgacata caacgtaccc agaccggaga
     4861 gaaaacggtt tggaacggta cgtaaaatgc cgaaaaatga accgacgagg aaagcgataa
     4921 tccaggcgca gatcgacaaa gcgatcgtca cctgaaaacc actccagatc caaccaagat
     4981 aggtggtgtt gccgaacggg gcttgttgta aaaaaatacc ccagttccag tctatagaca
     5041 taaatctact ccagaaaaaa gagggtagca gcgttaactg ctaccctcga agattgttac
     5101 ccagcgtatt gcggttttca ggcccgatgg ggaacgacca tcaggcgtat agtctgtccg
     5161 tgctacgtaa caatcgagag ggctggaatt tccgcccctg gttcttgtaa ttagttcagt
     5221 gctttgtcat tcggttcttt gaacagtgct ttcatttcgt ctgacagttc gaaattcatg
     5281 ttcaggtttt tcggcggaat tggatttttg aaccatttat caaaccattt ttccgcttca
     5341 ccggaagtct gcacctgagc gatagtgtca tccatcagct ttttgaactg cggatcatct
     5401 ttacgcaaca tgcaaccgta ggcttcctga gactgcggct tgccgacgat atcccagttg
     5461 tctggtttct tcgctttcgc acgttcaccg gccagcaggg catcatccat cataaaggca
     5521 acggcacgac cgctttccag ggtgcggaaa gagtcaccgt gatctttggc gctgatgatg
     5581 cgcatattca ttttttgctc ttcattcagt ttgttgagca aaacttcaga ggtagtgccg
     5641 gaagtgacga ctacggcttt gtctttcagg tcggcaaaat ctttgatatc gccgcccttt
     5701 ttggtcagca ggcgcgtacc gaccacgaaa atagtatcag agaaagccgc ctgtttttgg
     5761 cgttcgacgt tgttggtggt agaaccacat tcaaaatcga aagtgccgtt ttgcagcagt
     5821 ggaatacggt tttgtgaggt aatcggaatc agttttacct gcaagtccgg tttgttgagt
     5881 ttctttttca ctgcttcaac aatggcgttg gagtaatcct gcgagtaacc caccactttt
     5941 tgctgattgt cgtaataaga gaaaggtact gaagattcac ggtgaccgac gacaatcaca
     6001 ccgtttttgg cgattttgtc cagcgtactg cctgctgccg gggcggcgtc atctgcctgt
     6061 gccagtcctg cggaaagcgc cagggcgagg attgctgtgg caggtttacg taattgcata
     6121 tccaactcct ttatcttctg cgttaagaac gcatggatac ccgttgtgag tgtttgtgtt
     6181 gttatcgtct gcaactttat tgtgcagtgt tgtgcctgtt aggtaacatt tagtttggct
     6241 aaatgtaaag atattgctgt tttattgttt gtttttgcga gatgcgccgc accattccga
     6301 agcaaaattc ttaaaccgca cctttttggt gctaccgctg atttgtggtg gtgcaacctg
     6361 gttgcgtcgc ggctgatttc atcgcttaca cagtaaataa agcaacttac atgccaaaaa
     6421 atacttaggg gcaaattaat tacgattgta attttaggct gaaaaagtca tatttcggac
     6481 agaattatct tttcggcatg ggacgtttgc cgggatgata actgcacacg ggaaaaatgc
     6541 tttttacctg tcttttcaag gaagaaacac cttatgtctg catcttcggt taagccgtta
     6601 aatgttcaat tacccgcaat aacccttatc ctttttgcac tctgtattgg gatattttgt
     6661 tatctcgcac aatggatgag ttatgaagag gtcgatcaat ccgcacttat ccatctcggc
     6721 gcaaacgttg cgcctcttac tttgtcgggt gaaccctggc gcttattgag cagtatcttt
     6781 ctgcacagta gtgtttctca tctgctgatg aatatgtttg cattcctggt cgtgggaggc
     6841 gtggcggaac agattctggg gaaatggcga ctcctgatta cctggttatt ctccggcgtc
     6901 tttggtgggc tcatcagcgc ctgttatgcg ttacgcgata gtgatcagat agtcatcagc
     6961 gttggggcat ccggggcaat tatgggaata gctggcgctg cgatagcaac acagcttgct
     7021 tcaggtgcgg gcacatacca taaaaaccag cggcgagtat tttctctgtt gggtatggtg
     7081 gcgctgacac tgttgtatgg tgcccggcaa acaggaatag ataatgcttg tcacattggc
     7141 ggcctgattg cgggtggcgc gttgggttgg ctgagcgcgc gtttatctgg gcaaaaccga
     7201 ctcgttacgg aaggcgggat tattgttgcg ggcagtcttc ttctgaccgg ggctatctgg
     7261 cttgcgcagc agcagatgga tgagtcagtt ttacaagtca ggcaaagcct gcgtgaagcg
     7321 ttttatccac aggagattga acaagagcga cggcaaaaaa agcagcagtt agcggaggaa
     7381 cgcaacgccc tcagggaaac attatccgct ccggtaagtc gtgaacaggc cagtggtgat
     7441 ttgctcgctg agattgccga tatccatgat atggcgatca gtcgggatgg taatatgttg
     7501 tatgccgcaa ttgaaaacac gaacagcatt gttgttttcg acctcggaca aaagaaaatc
     7561 ctgcatacct ttacagcgcc catagcgaaa gaaaagtcag tcaaacattg tggtggctgt
     7621 aaagatcagg gcgtcagatc gctggcatta agcccggatg aaaagttgat ttatgcgact
     7681 tcatttgaag cgaatgcgtt atcggtcatt aacgtggcga caggggagat tattcagtcg
     7741 attaccaccg gtgcacatcc tgacagcctt atcctctcgc gtgatggcac aaaagcctgg
     7801 gtgatgaatc gcaccagtaa tagtgtgtca gcgattgatc tggtgactta tcagcatgtg
     7861 gcggatatcc cgctggagaa atacgacggg gcggggacga gcggtaaacc aggcgcctgg
     7921 gttatggcac tttccccgga tgaaagaaca ttactggttc cgggagcagg cagaggtaac
     7981 atcgtgcgga tcaataccat cacgcatcag aaagaagact ttcccgcagg tgatgcgcgt
     8041 ggaacgatat cggcgatgcg ttttcgacct gaaaacggcg aggttatttt tgcagatagt
     8101 caggggattt cacgtataag cgtaggggat caacaagcca gcattatgac gcaatggtgt
     8161 agcaggagcg tttattccgt tgagggtatt agcccggacg gtcaatattt agcgttggtg
     8221 tcatatggcc tgcaaggtta tgtcatcctg ctcaatatta atgccgggca gattattggc
     8281 gtttatcctg ccagctacgt taatcacctt cg
//
LOCUS       DAJVSY010000168         8194 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.170, whole genome shotgun sequence.
ACCESSION   DAJVSY010000168 DAJVSY010000000
VERSION     DAJVSY010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8194
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.170"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..815)
                     /locus_tag="OQQ19_003541"
     CDS             complement(<1..815)
                     /locus_tag="OQQ19_003541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HCS1805029.1"
                     /translation="MKPAHNPSFFRSFCGLGCISRLSVEEQNITDYHRIWDNWAKEGA
                     ATEDRTQAVRLLKICLAFQEPALNLSLLRLRSLPYLPPHIQELNISSNELRSLPELPP
                     SLTVLKASDNRLSRLPALPPHLVALDVSLNRVLTCLPSLPSSLQSLSALLNSLETLPD
                     LPPALQKLSVGNNQLTALPELPCELQELSAFDNRLQELPPLPQNLRLLNVGENQLHRL
                     PELPQRLQSLYIPNNQLNTLPDSIMNLHIYADVNIYNNPLSTRTLQALQRLTSS"
     gene            925..1104
                     /locus_tag="OQQ19_003542"
     CDS             925..1104
                     /locus_tag="OQQ19_003542"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805030.1"
                     /translation="MWLAENEGVKFWLNVLTELKKCGWSPYLFIKPVVCPPLHHFSAL
                     IEILSMVVNSTNPVR"
     gene            1294..1383
                     /locus_tag="OQQ19_003543"
                     /pseudo
     CDS             1294..1383
                     /locus_tag="OQQ19_003543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311139.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1175 family protein"
     gene            1407..5921
                     /locus_tag="OQQ19_003544"
                     /pseudo
     CDS             1407..5921
                     /locus_tag="OQQ19_003544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000536590.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
     gene            5922..7571
                     /locus_tag="OQQ19_003545"
     CDS             5922..7571
                     /locus_tag="OQQ19_003545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfaQ family protein"
                     /protein_id="HCS1805031.1"
                     /translation="MNWRRIVWLLALVTQPTLAEETPLQLALRGAQHDQLYQLSSSGV
                     TTVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRD
                     TALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLA
                     TLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTD
                     GTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKST
                     TAVKPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDRE
                     AKSTPPEAAKAMTVAIHTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWT
                     QDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRS
                     TCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRN
                     FFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD"
     gene            7576..>8194
                     /locus_tag="OQQ19_003546"
     CDS             7576..>8194
                     /locus_tag="OQQ19_003546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805032.1"
                     /translation="MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASF
                     SQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKIQQGRLVVNGASMPQRVESDGSF
                     ARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHV
                     VTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQV"
BASE COUNT         2002 a         1968 c         2300 g         1924 t
ORIGIN      
        1 gaagaggtta atctttgcag ggcttgcaga gtgcgagtcg acaatggatt gttataaata
       61 ttaacatctg cataaatgtg cagattcatg atactgtctg gcaatgtgtt cagctgattg
      121 ttagggatat atagtgattg cagacgttgt ggaagttcgg gcagtctgtg tagttggttt
      181 tccccaacgt ttaaaagcct cagattttga ggaaggggcg gtagctcttg taatctgtta
      241 tcaaaagcac ttagttcctg tagttcacat ggtaattctg gtaaggcagt aagctggttg
      301 ttgccaacag aaagtttttg tagagccggg ggaagatcag gtagcgtctc caggctattg
      361 agaagggctg agagtgactg caaggaagat ggaagagaag gtaaacatgt taaaactctg
      421 ttaagtgaaa catcaagagc gaccaggtga ggcggaagag ccgggagcct gctcagtctg
      481 ttatcgctgg ctttaagtac agttaaggac ggagggagtt ctggcagaga gcgtagctca
      541 ttgctagaga tgttaagttc ttgtatgtgc gggggcaggt atgggagaga gcgtaatctg
      601 agtaaactta aattgagggc tggctcttga aaagccagac atattttcag taatcgaact
      661 gcctgtgttc ggtcttctgt tgcagcacct tccttggccc agttatccca gatgcggtga
      721 taatccgtga tattttgctc ttctacggat aaacgggata tacatcctaa accacaaaag
      781 gagcggaaaa aagaaggatt gtgggcaggt ttcatttatt attgatcctc attgtttata
      841 tattaatatg ttcgtgcaaa tggagtgagg attctttaaa aaaacgctcc tgtaaatagt
      901 taagaacagg aagaactgtt ggggatgtgg ctggccgaaa atgaaggggt gaagttctgg
      961 ctcaatgtgc tgactgaact gaaaaaatgc ggttggtcgc cctacctttt catcaagcca
     1021 gtagtctgcc caccactgca tcatttctct gcgcttatcg agatactgag catggttgta
     1081 aattcaacta acccagtgcg ttgacaaaaa attagcgcaa gaagacaaaa aatcaccttg
     1141 cgctaatgct ctgtatcagg tcactaatac cagctaagta gttgattcat agtgactgca
     1201 tatgttgtgc tttgtcgcat tttgtagtct attatttaat ctgtaacaac gataatacaa
     1261 tgaattttaa ttggtttttg tgattttgtc cttcttctga catggaagga cacccgatgg
     1321 atacccaacg attccaatcc caatttcatt ggcatttatc gtttaaattt tctggcgcga
     1381 tagcagcgtg cttgtctctg tctcttgtgg gaacagggct tgctaatgct gatgattcgc
     1441 ttccttccag taactatgcg ccgcccgccg ggggaacatt ctttttgctt gctgacagca
     1501 gttttagcag cagtgaagag gcgaaagtgc gactggaagc gccggggcgt gattatcggc
     1561 gctatcagat ggaagagtac ggcggcgtgg acgttcgcct gtatcgtatt cctgacccga
     1621 tggcattttt gcgccagcag aaaaacctgc atcgcattgt ggtgcaaccg caatatctgg
     1681 gcgacgggct gaacaatacg ctgacctggc tgtgggataa ctggtacggc aaatctcgcc
     1741 gcgtaatgca gcgtactttc tcttctcagt cacggcagaa tgtgactcag gcattacccg
     1801 aattacatct cggcaatgcc attattaaac cttcccgtta tgtacagaac aaccagtttt
     1861 ccccgctgaa aaaatatccc ttggtggaac agttccgtta tccactatgg caggctaaac
     1921 cggtcgagcc gcagcaaggg gtaaaactgg aaggcgcatc cagcaatttc atctcgccgc
     1981 agccgggtaa catttatatt cctctcggcc aacaagagcc gggactgtac ctcgtcgagg
     2041 cgatggttgg tgggtatcgg gcgacgacgg tggtgtttgt ttccgatacc gtggctctta
     2101 gcaaagtgtc aggcaacgag cttctggtgt ggaccgcggg taaaaaacag ggtgaagcga
     2161 agcccggctc agagatcttg tggactgacg gtcttggcgt gatgacccgc ggtgtgaccg
     2221 atgacagcgg taccttgcag ttacaacata tatcgccaga acgttcatac attctgggta
     2281 aggatgctga aggcggcgtt tttgtctccg agaacttctt ctacgaaagc gaaatctaca
     2341 acacccgctt gtatattttt accgatcgcc cgctatatcg cgcaggcgat cgtgtcgatg
     2401 ttaaagtgat gggccgcgag ttccacgatc cgttgcattc atcccccatc gtcagcgccc
     2461 cggcgaagct ttcggtgctg gacgctaacg gcagtctgtt gcaaaccgtc gatgtcacgc
     2521 tggatgcgcg caatggcggg cagggaagtt tccgcctgcc agaaaatgcc gttgccggag
     2581 gttatgagtt acgtcttgct taccgcaatc aggtctatag cagcagtttt cgcgtggcaa
     2641 actacatcaa gccacatttc gagattggtt tagctctcga caaaaaagag ttcaaaactg
     2701 gcgaagcggt cagcggcaaa ctgcaactgc tctacccgga tggcgagccg gtaaaaaatg
     2761 cccgcgtgca gttaagtttg cgcgctcagc aattatcaat ggtcggtaac gatttgcgtt
     2821 atgccggacg tttccccgtg tcgctggaag gcagcgaaac ggtgtccgac gccagcggtc
     2881 atgtggcgtt aaatctcccc gccgccgata aaccgagccg ttatttgtta accgtctccg
     2941 ccagtgacgg cgcggcgtat cgtgtcacca ccaccaaaga gatcctcatt gaacgcggtc
     3001 tggcgcatta ctcattaagt actgccgcac aatacagtaa tagcggcgag tcggttgtgt
     3061 tccgttatgc cgcgctggaa tcttcaaaac aggttcctgt tacgtatgaa tggttgcgtc
     3121 tcgaagaccg cacgagccat agcggagagc taccgtcagg cggcaaatcc tttaccgtca
     3181 atttcgctaa acctggcaac tacaatctga cattacgcga taaagacggc ttaattctcg
     3241 ctgggttaag ttatgccgtc agcggtaagg gcagcacggc gcatacgggt acggtagata
     3301 tcgtggcgga taaaacgctg taccagccag gcgaaaccgc gaagatgctg attacctttc
     3361 cggagccaat tgatgaagca ttattgacgc tggaacgcga tcgcgtggaa cagcagtcgc
     3421 tgctttcgca tccggcaaac tggctaacgc tacaacgttt aaacgatacc cagtatgaag
     3481 cccgggttcc agtgagcaat tcctttgcgc ctaacatcac tttttcggtg ctgtataccc
     3541 gtaatggtca gtacagtttt cagaacgccg ggatcaaagt tgccgttcct cagcttgata
     3601 tccgggtgaa aacggacaaa acccattacc agccaggtga actggtcaat gtcgaattaa
     3661 cctcgtcgct gaaaggtaaa cctgtttctg cgcagctaac ggtaggcgtg gtcgatgaaa
     3721 tgatctacgc gctgcaacca gaaatcgcgc cgaatatcgg caaatttttc tatccgctgg
     3781 ggcgtaacaa tgtgcgtacc agctccagtc tgtcgtttat cagctacgac caggcgctct
     3841 ccagcgagcc ggttgcgcct ggcgcaacta accgcagcga gcggcgagta aaaatgcttg
     3901 aacgtccacg gcgtgaagag gtggataccg cggcatggat gccgtcactc acaaccgata
     3961 aacaaggcaa agcgtatttc acgttcctga tgcctgattc gttaacccgc tggcgtatca
     4021 ccgcgcgtgg gatgaacggc gacgggctgg tcgggcaggg gcgtgcttat ctgcgttcgg
     4081 aaaaaaatct ctacatgaag tggagtatgc caacggtgta tcgcgtgggc gacaaaccgg
     4141 cggcaggact gtttatcttc agtcagcagg ataacgaacc ggtggcgctg gtgactaaat
     4201 ttgcaggcgc tgagatgcgc cagacgctga cgctgcacaa aggggcgaat tatatttcgc
     4261 tggcgcagaa tattcagcaa tctggcttgt taagtgcaga actgcaacaa aatgggcaag
     4321 tgcaggacag cattagcaca aaactgtctt ttgtggacaa cagcaggccc gttgaacagc
     4381 agaaaaatgt catgctcggc ggtggcgaga acgcgctgat gttgcccgag caggcgagta
     4441 atatccggct acaaagtagt gaaacgccgc aggagatttt ccgcaacaat cttgatgcgt
     4501 tagtcgatga accgtggggt ggggtgatca acaccggtag ccgtctgatc ccgctcagtc
     4561 tcgcctggcg ttcgcttgcc gatcatcaaa gtgccgccgc taacgacatt cgtcagatga
     4621 ttcaggataa ccgtctgcgg ctgatgcaac tggcggggcc cggagcgcgc tttacctggt
     4681 ggggtgaaga tggcaatggt gacgccttcc ttacggcatg ggcatggtac gccgactggc
     4741 aggccagcta ggcgctcggc gtaacgcaac aaccggaata ctggcagcat atgctcgaca
     4801 gttatgccga gcaggcggat aacatgccgt tattgcatcg ggcgctggtg ctggcgtggg
     4861 cacaggagat gaatctgccg tgcaaaacgt tgttgaaagg gttggatgaa gctatcgccc
     4921 ggcgcggaac taaagatgaa gatttctctg aggaagacat ccgcgatatc aatgacagcc
     4981 tgatcctcga tacaccggaa tctccactgg cagatgcggt ggcaaacgtc ttaaccatga
     5041 cgttgctgaa aaaagcgcag ttgaagtcca cggtgatgcc acaggttcag caatatgcgt
     5101 gggataaagc ggcaaacagc aatcagccgc tggcgcacac ggttgtgctg ctcaatagcg
     5161 gtggtgacgc tacccagacg gccgctattt taagtggttt gaccgctgag caatccacta
     5221 ttgagcgcgc gctggccatg aactggctgg cgaaatatat ggcgacaatg cctccagttg
     5281 ttttgcctgc gcctgcgggc gcatgggcta aacataagtt aactggaggg ggcgaatact
     5341 ggcgttgggt tggtcagggc gtgccggaca ttctctcttt tggtgacgaa ttatcgccgc
     5401 aaaatgtgca ggtccgctgg cgtgagccgg caaaaatggc tcaacaaagt aacattccgg
     5461 tgaccgttga acgccagttg tatcggctta tccctggtga agaagagatg agctttattc
     5521 tgcaaccggt gaccagcaat gagattgaca gcgatgcgct gtatctcgat gacatcacgc
     5581 ttaccagcga gcaggatgca gttctgcgct acggtcaggt ggaagtaccg ctgccaccgg
     5641 gagccgacgt tgagcgcaca acatggggca tttcggtcaa taaacccaac gccgcgaaac
     5701 agcaggggca attgctggaa aaagcgcgaa atgaaatggg cgaactggcc tatatggtgc
     5761 cggtgaaaga actgacggga acggtcactt tccgccattt gctgcgcttc tcgcaaaaag
     5821 ggcaattcgt tctgcctcct gctcgttatg tgcgttccta tgcacctgca cagcaaagtg
     5881 ttgcggcagg gagtgaatgg accgggatgc aggtgaaata agtgaactgg cgcagaatcg
     5941 tctggctatt ggcgttggtt actcagccaa cgcttgcgga ggagacgccg ttacaactgg
     6001 cactgcgtgg tgcgcagcac gatcaactgt atcagctgtc gtcatcaggc gtgaccacag
     6061 tctcagcatt acctgactcg ctcaccacgc cgttagggag tttgtggaaa ctgtatgttt
     6121 acgcctggct ggaggatacc catcaaccgg agcagcccta ccagtgtcgc ggaaactccc
     6181 cggaagaggt ttattgttgt caggctgggg agagcataac gcgcgatacc gcgctggtac
     6241 gttcctgtgg gctctatttt gcgccgcagc ggttgcatat tggcgcagat gtgtgggggc
     6301 aatactggca acagcgtcag gcgcctgcgt ggttagcgtc tcttactacg ctgaagccag
     6361 aaacctcggt aacggttaaa tcgctgcttg attcattagc gacgttacct gcgcaaaaca
     6421 aagctcagga agtcttactg gatgtggtgc tggacgaggc gaaaatcggt gtcgcatcca
     6481 tgctcggtag tcgggtacgg gtgaaaacct ggagctggtt tgccgatgat aaacaggaaa
     6541 tccgtcaggg tggttttgcc ggctggttaa ccgatggtac accgctgtgg gttactggca
     6601 gtggcaccag caaaacggta ctaacccgtt atgcgacagt gcttaatcgg gttttgccag
     6661 tgccgacgca ggttgccagt gggcaatgtg tagaggtgga gctgtttgcc cgctatccgc
     6721 tgaagaaaat cacagcggaa aagagtacga cggcagtaaa acccggcgta cttaatgggc
     6781 gctatcgtgt gacgtttact aatggtaacc acattacgtt tgtcagccac ggtgagacga
     6841 ccttactgag cgaaaagggc aaactgaaat tgcagtcgca tctcgatcgt gaagagtacg
     6901 ttgccagagt tctggatcgc gaggcgaaaa gtacgccccc tgaggcagcg aaagccatga
     6961 ccgtggcgat tcacactttt ttacagcaaa acgccaatcg ggaaggcgat tgcctgacca
     7021 tccccgacag cagcgccacg cagcgtgttt ctgcttcgcc agcgaccacg ggggcgcgaa
     7081 cgatgaccgc ctggacgcag gatctcatct atgcaggcga tccggttcat tatcatggca
     7141 gtcgagctac cgaagggaca ctttcctggc ggcaagccac ggcccaggcg gggcagggag
     7201 agcgttacga ccagatactc gcgtttgctt atcccgacaa cagccttagc cgctggggag
     7261 cgccacgctc aacctgccag ttattaccca aagcgaaagc ctggctggcg aaaaaaatgc
     7321 cgcagtggcg gcgtatatta caaggcgaga cggggtacaa cgaaccagac gtgtttgcgg
     7381 tctgtcgttt agtctcaggt ttcccctata ccgatcggca gcagaaacgg ctgtttattc
     7441 gtaacttctt tacgcttcag gatcggctgg atttaaccca tgagtatctg cacctggcct
     7501 ttgatggtta tcccaccggg cttgatgaga actatatcga aacgctgacc cgacaattat
     7561 taatggacta atgctatgcg aaagattttt cttccgttgt tactggtggc actttcgcct
     7621 gtcgctcaca gtgaaggtgt gcaggaagtc gagattgacg caccgctctc tggctggcat
     7681 ccggcagagg gcgaagatgc cagtttttca caatcgatca attacccggc gtcgtccgtc
     7741 aacatggcag atgatcaaaa tatctcagcg cagatccgcg gcaaaataaa gaattatgct
     7801 gcggcgggta aaattcagca gggccggctg gtggtcaacg gtgccagtat gccgcagaga
     7861 gttgaatccg atggttcatt tgcacgccct tatattttca ctgaaggcag caacagcgtg
     7921 caggtcatca gcccggatgg gcaaagccga caaaaaatgc agttttactc aacgccgggt
     7981 acaggaacga ttcgtgcacg tttacggctg gttctctcgt gggatacgga caataccgat
     8041 ctcgatctcc atgttgtcac gcccgatggc gaacacgcct ggtacggtaa caccgtgctg
     8101 aaaaacagtg gtgcactgga tatggatgtc acgacggggt acggacccga gattttcgcc
     8161 atgccagcgc cagttcacgg acgctatcag gtgt
//
LOCUS       DAJVSY010000169         8146 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.171, whole genome shotgun sequence.
ACCESSION   DAJVSY010000169 DAJVSY010000000
VERSION     DAJVSY010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8146
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.171"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..260
                     /locus_tag="OQQ19_003547"
     CDS             <1..260
                     /locus_tag="OQQ19_003547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418544.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="melibiose:sodium transporter MelB"
                     /protein_id="HCS1805033.1"
                     /translation="VVLGMIGYVPNVEQSTQALLGMQFIMIALPTLFFMVTLILYFRF
                     YRLNGDTLRRIQIHLLDKYRKVPPEPVHADIPVGAVSDVKA"
     gene            complement(399..1028)
                     /locus_tag="OQQ19_003548"
     CDS             complement(399..1028)
                     /locus_tag="OQQ19_003548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2238 domain-containing protein"
                     /protein_id="HCS1805034.1"
                     /translation="MTRTLKPLILNTGALALTLILIYTGISAHDKLTWLMEVTPVIIV
                     VPLLLATARRYPLTPLLYTLIFLHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDK
                     LGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQ
                     GADDFLGTQGDQWDTQSDMFCALLGALTTVIFLARFHCRQLRRFGLITG"
     gene            complement(1151..2797)
                     /gene="fumB"
                     /locus_tag="OQQ19_003549"
     CDS             complement(1151..2797)
                     /gene="fumB"
                     /locus_tag="OQQ19_003549"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I fumarate hydratase"
                     /protein_id="HCS1805035.1"
                     /translation="MSNKPFIYQAPFPMGKDNTEYYLLTSDYVSVADFDGETILKVEP
                     EALTLLAQQAFHDASFMLRPAHQKQVAAILHDPEASENDKYVALQFLRNSEIAAKGVL
                     PTCQDTGIAIIVGKKGQRVWTGGGDEEALSKGVYNTYIEDNLRYSQNAALDMYKEVNT
                     GTNLPAQIDLYAVDGDEYKFLCVAKGGGSANKTYLYQETKALLTPGKLKNFLVEKMRT
                     LGTAACPPYHIAFVIGGTSAETNLKTVKLASAHYYDELPTEGNEHGQAFRDVQLEQEL
                     LEEAQKLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINREGIW
                     IEKLEHNPGQYIPQELRQAGEGEAVKVDLNRPMKEILAQLSQYPVSTRLSLTGTIIVG
                     RDIAHAKLKELIDAGKELPQYIKDHPIYYAGPAKTPAGYPSGSLGPTTAGRMDSYVDL
                     LQSHGGSMIMLAKGNRSQQVTDTCHKHGGFYLGSIGGPAAVLAQQSIKHLECVAYPEL
                     GMEAIWKIEVEDFPAFILVDDKGNDFFQQIVNKQCANCTK"
     gene            complement(2875..4215)
                     /gene="dcuB"
                     /locus_tag="OQQ19_003550"
     CDS             complement(2875..4215)
                     /gene="dcuB"
                     /locus_tag="OQQ19_003550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuB"
                     /protein_id="HCS1805036.1"
                     /translation="MLFTIQLIIILICLFYGARKGGIALGLLGGIGLVILVFVFHLQP
                     GKPPVDVMLVIIAVVAASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTI
                     LCGTGHVVYTILPIIYDVAIKNNIRPERPMAASSIGAQMGIIASPVSVAVVSLVAMLG
                     NVTFDGRHLEFLDLLAITIPSTLIGILAIGIFSWFRGKDLDKDEEFQKFISVPENREY
                     VYGDTATLLDKKLPKSNWLAMWIFLGAIAVVALLGADSDLRPSFGGKPLSMVLVIQMF
                     MLLTGALIIILTKTNPASISKNEVFRSGMIAIVAVYGIAWMAETMFGAHMSEIQGVLG
                     EMVKEYPWAYAIVLLLVSKFVNSQAAALAAIVPVALAIGVDPAYIVASAPACYGYYIL
                     PTYPSDLAAIQFDRSGTTHIGRFVINHSFILPGLIGVSVSCVFGWIFAAMYGFL"
     gene            complement(4786..5505)
                     /gene="dcuR"
                     /locus_tag="OQQ19_003551"
     CDS             complement(4786..5505)
                     /gene="dcuR"
                     /locus_tag="OQQ19_003551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DcuR"
                     /protein_id="HCS1805037.1"
                     /translation="MSNVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIF
                     NSDTPIDLILLDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVD
                     YLIKPFQASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLT
                     PQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTG
                     RPVYRYRIQAEHYSLLKQYCQ"
     gene            complement(5502..7133)
                     /gene="dcuS"
                     /locus_tag="OQQ19_003552"
     CDS             complement(5502..7133)
                     /gene="dcuS"
                     /locus_tag="OQQ19_003552"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DcuS"
                     /protein_id="HCS1805038.1"
                     /translation="MRHSLPYRMLLKRPMKLSTTVILMVSAVQFSVLLVVHLIYFSQI
                     SDMTRDGLANKALAVARTLADSPEIRQGLQKKPQESGIQAIAEAVRKRNDLLFIVVTD
                     MQSLRYSHPEAQRIGQPFKGDDILKALNGKENVAINRGFLAQALRVFTPIYDENHKQI
                     GVVVSGLELSRVTQQINDSRWSIIWSVLFGMLVGLIGTCILVKVLKKILFGLEPYEIS
                     TLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQV
                     VDVSEVLRDGTPRRDEEITIKDRLLLINTVPVRSNGVIIGAISTFRDKTEVRKLMQRL
                     DGLVNYADALRERSHEFMNKLHVILGLLHLKSYKQLEDYSLKTANNYKEEIGSLLGKI
                     KSPVIAGFLISKINRATDLGHTLILNSESLLPDSGSEDQVATLITTLGNLIENALEAL
                     GPEPGGEISVTLHYRHGWLHCEVNDDGPGIAPDKIDHIFDKGVSTKGSERGVGLALVK
                     QQVENLGGSIAVESEPGIFTQFFVQIPWDGERSNR"
     gene            7314..7544
                     /locus_tag="OQQ19_003553"
     CDS             7314..7544
                     /locus_tag="OQQ19_003553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(4Fe-4S)-binding protein"
                     /protein_id="HCS1805039.1"
                     /translation="MDQALLDEGYRCYTGEKIDVYFNTAICQHSGNCVRGNGKLFNLK
                     RKPWIMPDEVDVVTVVKVIDTCPSGALKYRHK"
     gene            7556..7828
                     /locus_tag="OQQ19_003554"
     CDS             7556..7828
                     /locus_tag="OQQ19_003554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS1805040.1"
                     /translation="MEIREGHNKFYINDEQGKQIAEIVFVPTGENLAIIEHTDVDESL
                     KGQGIGKQLVAKVVEKMRREKRKIIPLCPFAKHEFDKTREYDDIRS"
     gene            8055..>8146
                     /gene="ghoS"
                     /locus_tag="OQQ19_003555"
     CDS             8055..>8146
                     /gene="ghoS"
                     /locus_tag="OQQ19_003555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type V toxin-antitoxin system endoribonuclease
                     antitoxin GhoS"
                     /protein_id="HCS1805041.1"
                     /translation="MEGKNKFNTYVVSFDYPSSYSSVFLRLRSL"
BASE COUNT         2021 a         1970 c         2084 g         2071 t
ORIGIN      
        1 cggttgtgtt agggatgatt ggctatgtac cgaatgttga acagtctacg caagccctat
       61 taggtatgca gtttattatg attgctctac caactctgtt tttcatggta acgctgattc
      121 tctacttccg tttctatcgc ctcaatggtg acacgctgcg caggatccag atccatctgc
      181 tggataaata tcgcaaagta ccgcccgagc ctgttcatgc tgatattccg gtcggtgcag
      241 tgagtgatgt gaaagcctga cgtggacaat agctaacgaa aatggcctga tgcgatatgt
      301 ttatcaggcc acgtcttaat gtaatgcttt ggatttgcaa attttgtaga ccggataagg
      361 aattcacgct gcatccggca tcaacaaagc gcacgttgtt atccggttat caagccaaag
      421 cgccgtagct ggcggcaatg aaagcgagcg aggaatatca ccgtcgttaa tgcgccaagc
      481 agcgcgcaga acatatcgga ttgcgtgtcc cactggtcgc cctgggtgcc gagaaaatca
      541 tccgctccct gacccattgc cagcgccgcc caccactcga ttaattcata cattgcgctt
      601 atcgccagcg ccacgcagca gactaggaac gccaccattt tacgtccgcg cacgtacatc
      661 ccgcgaacga gaatttctcg tgccaccagt gcaggcacca gcccctggaa aaagtgcccc
      721 agcttgtcat acggattacg gctcaacccc agccattcct gcacctcaaa accaacgggg
      781 actttcgcgt aggtgtattg tccgccgacc atcaggatga tggcgtgaag gaaaatgagc
      841 gtatagagca gcggcgttaa cggataacgt ctggcggtgg caagcagtag cggcacgaca
      901 ataatcaccg gtgtcacttc catcagccag gtgagtttgt catgggccga aatgccggta
      961 taaatcagga ttaatgttag cgccagtgcg ccggtgttaa gaattaacgg cttgagtgtg
     1021 cgggtcatgg tgagttcgca aatcagggaa aatactgact attcaccagc aagcgtgaaa
     1081 ttacaatcgc aaaagaggtg gcccaggggg atcacctggc agcatgctgc caggcgctgg
     1141 gccgaagagg ttacttagtg cagttcgcgc actgtttgtt gacgatttgc tggaagaagt
     1201 cgttaccttt gtcatcgacc aagataaacg ccgggaaatc ttctacttcg attttccaga
     1261 tagcttccat acccagctcc ggataagcga cgcattccag atgcttgatg ctctgctgcg
     1321 ccagtaccgc cgccggaccg ccgatgctac cgaggtagaa gccgccgtgt ttatgacacg
     1381 tgtcggtaac ctgctgactg cggttacctt tcgccagcat gatcatgctg ccgccgtggg
     1441 attgcagcag atccacgtag gagtccatac ggcctgcggt ggttgggcca agtgaacctg
     1501 atggataacc ggcaggggtt ttcgccggac ccgcgtagta gatcgggtga tctttgatgt
     1561 actgcggaag ttctttaccg gcgtcaatca gctctttcag cttggcgtgt gcaatatctc
     1621 ggcccacgat aatggtgccg gtgagcgaca aacgagtgga taccgggtat tgcgaaagct
     1681 gggcgaggat ctctttcatc gggcggttaa ggtcaacttt caccgcttcg ccttcaccgg
     1741 cctggcgcag ttcttgtgga atgtactggc ctgggttgtg ttccagtttt tcgatccaga
     1801 taccttcgcg gttgattttc gctttaatgt tacggtcagc ggagcaggag acgcccatgc
     1861 cgaccgggca ggatgcgccg tgacgtggca gacggataac gcgaatgtcg tgcgcgaagt
     1921 atttaccgcc aaactgcgcg ccaagaccga gtttctgggc ctcttccagc agttcctgtt
     1981 ccagctggac atcgcggaac gcctgaccat gttcgttccc ttccgtcggc agttcatcgt
     2041 aatagtgagc gcttgctaac ttgacggttt tcaggttggt ttccgcagac gtaccgccaa
     2101 tcacaaacgc gatatggtac ggcgggcagg ctgcagtacc gagggtacgc attttctcga
     2161 cgaggaagtt tttcagtttg ccgggagtca gcagggcttt ggtttcctgg tagagatacg
     2221 ttttgttggc agagccgccg cctttcgcaa cgcaaaggaa tttgtactca tcgccatcta
     2281 ccgcgtacag gtcgatttgc gcaggcaggt tagtgccggt gttgacctct ttgtacatgt
     2341 ccagcgccgc attctgtgaa tagcgcaggt tatcttcgat ataggtgtta tagacgcctt
     2401 tcgacagcgc ttcttcatca ccgccgccgg tccacacgcg ctggcctttt ttaccgacga
     2461 tgatcgcgat gccggtatcc tggcaggtcg gcagcacgcc tttggcggcg atttcggaat
     2521 ttcttaagaa ttgcagcgcc acgtacttgt cgttttcgct ggcttctgga tcgtgaagaa
     2581 tagccgcaac ctgtttctgg tgtgccgggc ggagcataaa agaagcgtcg tgaaaggctt
     2641 gctgcgccag cagggtcagg gcttctggtt ccactttcag gatggtttcg ccgtcgaagt
     2701 cggcaacgct aacgtaatcg gaagtgagta gatagtattc ggtattgtct ttccccatcg
     2761 ggaaaggtgc ctggtagata aagggtttgt ttgacatagc ttccagcctg taactctgta
     2821 tttgttattc gaaaatggcg tgccgcgtag tcacgggcgg cacgcaaagt gcatttataa
     2881 gaacccgtac atcgcggcga agatccagcc gaagacgcac gatacgctca caccaatcaa
     2941 ccccggcaga ataaagctgt ggttgatgac gaagcgaccg atgtgggtgg tgccggaacg
     3001 gtcaaactga atcgctgcca gatcgctcgg ataagtcggc aggatgtaat aaccgtagca
     3061 agccggtgct gaagccacga tgtatgccgg atcaacgccg atcgccaacg cgaccggaac
     3121 aatcgccgcc agcgccgcag cctgagagtt tacaaacttg gaaaccagca gcagaacaat
     3181 ggcataggcc cacggatact ctttcaccat ttcacccagt acgccctgaa tttcagacat
     3241 atgcgcaccg aacatggttt ctgccatcca tgcgataccg tacaccgcca cgatggcgat
     3301 cataccggaa cggaagactt cgttttttga gatagacgcg ggattggttt tggtcaggat
     3361 aataatcagc gccccggtca gcagcataaa catctgaata accagtacca tcgacagcgg
     3421 tttgccgccg aaggatggac gcaggtccga atcagcacca agaagggcga ctacagcgat
     3481 tgccccgagg aaaatccaca ttgccagcca gttgcttttc ggcagttttt tatccagcag
     3541 cgtcgcggta tcaccgtaaa catactcacg gttttccggt acggagatga atttctggaa
     3601 ctcttcgtct ttatccagat ctttaccacg gaaccagctg aagataccga tcgccaggat
     3661 accgattaac gtcgatggaa tggtgattgc cagcaggtcg aggaactcaa gatggcgacc
     3721 atcaaaggtg acattaccca gcatcgcaac cagagacacg accgcaaccg acaccggact
     3781 ggcgataatc cccatctgtg caccgataga acttgccgcc atcggacgtt ccggacggat
     3841 gttgttctta atggcgacgt cgtagatgat cggcagaatg gtgtaaacca catgacccgt
     3901 accgcaaaga atggtcagcg tacaggtcac aaacggcgcg acaattgaga catatttcgg
     3961 gttgcggcgc agcaacttct cggcaatttg cagcatgaca tcaagaccgc ccgaagcttg
     4021 caaggtcgcc gatgccgcca ccaccgcaat gataaccagc atgacatcaa ccggtggttt
     4081 acctggctga aggtggaaga cgaagaccag aatgaccaga ccgataccgc ctaataaacc
     4141 cagcgcgata ccaccctttc tggcaccata aaacagacat atcagtatta tgataagttg
     4201 gatagtaaat aacatgtgtg aaccctcgcg ataatcctat ttaaattttt gctgaataga
     4261 tcacagtcac gttctgtttt gtatgaactg ttttcagagc ctgactaaat atccgtttgg
     4321 tcgttaccgg ctttagcaaa tacctcacag taaatattgg ctgattaaag cagcggcaaa
     4381 tttatgcact gtgataagcg gctttttcag agagaaaaac tctctggcga tgggtttata
     4441 gtttgtactg cgcagatgtt aatgttttgt ttgctgttat cttattgata tttatcggtc
     4501 tattttttgt tctcagggca gatatcatta ggtttaaaga ttaatcttat ctacccattt
     4561 gtgggtgaaa atacacataa tgcgggtgac ataatagtta attaactttt gttagcgttt
     4621 tgaaattaaa aacaccgttc acctgaagag atattaattt ttagcgatga tggagggata
     4681 attatatttg atctggcaca agttttactg atgaaggatg taacttgtgc caggggtatt
     4741 ttgcattacg gtaataatta ttacttacag ataaccagcg atccgttatt ggcaatattg
     4801 tttcagtagt gagtagtgtt ctgcctgaat acggtaacgg taaaccggac gccccgtgac
     4861 gccataatgg atactggtga acaagatgtg gcagttgacc agccagatga ggtatttacg
     4921 gcaggaaaca cgcgagatgt taacctcgtt agccagctcg tcggttgaaa actcatagtc
     4981 ctgatgcgcg tcaatccact ggcacagcgt gcgtaacgtc tgcggcgtta agccttttgg
     5041 caagcgacga ggatcctgtt cgttggagct gctgccgtgg attagctgat caagctcggc
     5101 ctggtcataa tactgatgtt tttccagcgc cattttcttt tgccgccagc cggtgagcgc
     5161 ctcttcaaag cgggaagcct ggaagggttt gatcaggtaa tccacgacac cgtaatgcag
     5221 cgaatcttta atggttgccg catcggctgc ggaggagatg acaatcacat cacttttgca
     5281 acgcgcgtta tgcaggacag gcagtaaatc gagcccgttc tctttttgca tatagatatc
     5341 gagcaatatc aggtcgatag gcgtatcgct attgaagata atctctttgg ctttctccag
     5401 cgtcgaggct gttccacagc attgaaagcc tgggatttgt gctacgtatc ggcgattcag
     5461 ctccgcgacc attgcgtcgt catcgataat taatacattg ctcatctgtt tgacctctcc
     5521 ccgtcccagg gtatctggac aaaaaattgt gtgaaaatcc cgggttccga ttccacggcg
     5581 atgctgccgc cgagattttc tacctgttgt ttgacaagtg ctaaaccgac gcctcgctcg
     5641 cttccttttg tcgagacacc tttgtcaaaa atgtgatcga ttttgtcggg tgcgatcccc
     5701 ggtccatcat cgttaacttc gcagtgcagc cagccgtgac ggtagtgcaa tgttacgcta
     5761 atttcgccac cgggttccgg ccctaatgct tccagcgcgt tttctatcag atttcccaat
     5821 gtggtaatca gcgtcgcgac ctggtcctca ctgccgctgt ctggcagcag gctttcactg
     5881 tttaaaatca gcgtatggcc taaatcggtc gcgcggttaa tcttgctgat taaaaaacca
     5941 gcgataaccg gagatttgat cttacccagc agagagccaa tctcttcctt atagttattg
     6001 gctgttttga gactgtaatc ttccaactgc ttataactct tcagatgcaa taatccgaga
     6061 atcacatgca atttattcat aaattcgtgg gatcgttcac gaagtgcatc agcatagttg
     6121 accagaccgt cgagtcgctg catcagttta cgaacttcag ttttgtccct gaaggttgaa
     6181 atggcaccga tgataacgcc attactgcgc accggaacgg tgttgatcag taatagccgg
     6241 tctttaatcg taatctcttc gtcgcggcgc ggcgtaccgt cgcgtaacac ttccgagaca
     6301 tctaccacct gtgaccatga gtggcttagc gtcgacagtt tctcatcgtc ctgcgactta
     6361 cggtaattca gcaattcttg tgcggcatcg ttgatcagcg tgacctcgcc gcgatcgtcc
     6421 acggcaacga cgccttcttt gatagactgc aacatggcct ggcgctgctc aaacagcgtg
     6481 gagatttcgt agggttccag gccgaaaagg atttttttca gtaccttaac cagaatgcag
     6541 gtgccaatca gtccgaccag catgccaaat aataccgacc agataatgct ccagcgactg
     6601 tcattgattt gttgggtcac gcggcttaac tcaaggccgc tcaccaccac gccaatttgt
     6661 ttatgatttt catcgtagat gggggtaaat acgcgtaaag cctgcgccag aaaaccgcga
     6721 ttgatagcga cattttcttt gccattcagc gctttaagga tgtcatcacc tttaaatggc
     6781 tgaccaatac gctgggcttc aggatgcgag tagcgaagac tttgcatatc cgtaacgaca
     6841 ataaacagca gatcgttgcg tttgcgcacg gcttccgcga tggcctggat tccgctctcc
     6901 tgcggttttt tctgcaagcc ctgacggatt tccggcgagt cggcgagggt acgcgccact
     6961 gccagtgcct tgttggccag cccgtctcgt gtcatatcac tgatttgcga gaagtaaatc
     7021 agatgcacca ccaatagcac cgagaactgt accgcgctga ccattaagat cactgtggta
     7081 ctcaatttca tcggacgttt gagtaacatg cggtagggca atgaatgtct catcagcttc
     7141 cttgtgtgac aaatttctta agcattatct ctgatgaggc gggtaattca aagggcgtaa
     7201 gaatgattgg ctatataggg gaagagactc tggcaacgga aactgccagt gctgtatgaa
     7261 gattccaggg ctatgcttat agcgataatc atactgatga gagagggaaa gtcatggatc
     7321 aggcgctact ggacgagggt tatcgctgtt ataccggcga aaagatcgat gtctatttca
     7381 acactgcgat atgtcagcat tctggcaatt gcgtacgtgg caacggcaag ttatttaatc
     7441 tcaaacgaaa gccgtggatc atgccggatg aagtcgacgt cgtcactgtg gttaaagtga
     7501 ttgatacgtg cccgagcggc gcgctgaaat accgtcataa ataagcgagg gtaaaatgga
     7561 aatacgcgaa ggccacaata aattttacat taatgacgaa cagggcaagc aaatcgctga
     7621 aattgtcttt gtgccgaccg gagagaattt agcgattatc gaacataccg atgtcgatga
     7681 aagcctgaaa gggcagggga ttggtaaaca gctggttgcg aaagtcgtgg aaaaaatgcg
     7741 tcgggaaaaa cgaaaaatta tcccactatg cccatttgcg aaacacgaat ttgataaaac
     7801 gcgggagtat gatgatattc gcagttgatg ggagagtaca gagtcacgat atttttcatg
     7861 ctctccgcgg agtgatgcag gagagcatct gaagggtagg gggatgcaca aagaatgggc
     7921 agagagcgcg tttttttgtc ccacgtcatc ccctttactg agcaaaaaaa agaatatctc
     7981 ctatatgaga atcatcaatc ggggttaata agttttgcgt ccccagagca ttcaatattg
     8041 ataggagtca tattatggaa ggtaaaaaca agttcaatac ttatgttgtt tcttttgatt
     8101 atccatcatc ttattcctca gtgttcttaa ggttaagatc attgat
//
LOCUS       DAJVSY010000170         8124 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.172, whole genome shotgun sequence.
ACCESSION   DAJVSY010000170 DAJVSY010000000
VERSION     DAJVSY010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8124
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.172"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            159..952
                     /gene="dkgB"
                     /locus_tag="OQQ19_003556"
                     /pseudo
     CDS             159..952
                     /gene="dkgB"
                     /locus_tag="OQQ19_003556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414743.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-didehydrogluconate reductase DkgB"
     gene            complement(949..1863)
                     /locus_tag="OQQ19_003557"
     CDS             complement(949..1863)
                     /locus_tag="OQQ19_003557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1805042.1"
                     /translation="MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMK
                     LGVSLLNRTTRQLSLTEEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATP
                     VVLHFLMPLIKPFRERYPEVTLSLVSSETIINLIERKVDVAIRAGTLTDSSLRARPLF
                     NSYRKIIASPDYISRYGKPETIDDLKQHVCLGFTEPASLNTWPIACSDGQLHELKYGL
                     SSNSGETLKQLCLSGNGIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDR
                     AVSTRIRAFIDFLSEHVKTAPGGAVREA"
     gene            2104..2904
                     /locus_tag="OQQ19_003558"
     CDS             2104..2904
                     /locus_tag="OQQ19_003558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HCS1805043.1"
                     /translation="MRKNTYAMRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERI
                     RILVWNIYKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFV
                     LPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNF
                     SLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTD
                     DQRRRAFGRPLDFVFYRGLNVSEASVLVTRASDHNPLLVEFSPGKPDK"
     gene            2935..3531
                     /locus_tag="OQQ19_003559"
                     /pseudo
     CDS             2935..3531
                     /locus_tag="OQQ19_003559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308233.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            complement(3580..4938)
                     /gene="mltD"
                     /locus_tag="OQQ19_003560"
     CDS             complement(3580..4938)
                     /gene="mltD"
                     /locus_tag="OQQ19_003560"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase D"
                     /protein_id="HCS1805044.1"
                     /translation="MKAKAILLASVLLVGCQSTGNVQQHAQSLSAAGQGEAAKFTSQA
                     RWMDDGTSIAPDGDLWAFIGDELKMGIPENDRIREQKQKYLRNKSYLHDVTLRAEPYM
                     YWIAGQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQTRNY
                     DARRDVVASTTAALNMMQRLNKMFDGDWLLTVAAYNSGEGRVMKAIKTNKARGKSTDF
                     WSLPLPQETKQYVPKMLALSDILKNSKRYGVRLPTTDESRALARVHLSSPVEMAKVAD
                     MAGISVSKLKTFNAGVKGSTLGASGPQYVMVPKKHADQLRDSLASGEIAAVQSTLVAD
                     NTPLNSRVYTVRSGDTLSSIASRLGVSTKDLQQWNKLRGSKLKPGQSLTIGAGSSAQR
                     LANNSDSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVKNNNMP
                     DS"
     gene            complement(5010..5765)
                     /gene="gloB"
                     /locus_tag="OQQ19_003561"
     CDS             complement(5010..5765)
                     /gene="gloB"
                     /locus_tag="OQQ19_003561"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HCS1805045.1"
                     /translation="MNLNSIPAFDDNYIWVLNDEAGRCLIVDPGDAEPVLNAIAANNW
                     QPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQDKGTTQVVKDGETAFVLGHEF
                     SVIATPGHTLGHICYFSKPYLFCGDTLFSGGCGRLFEGTASQMYQSLNKLSALPDDTL
                     VCCAHEYTLSNMKFALSILPHDLSINDYYRKVKELRAKNQITLPVILKNERQINVFLR
                     TEDIDLINVINEETLLQQPEERFAWLRSKKDRF"
     gene            5799..6521
                     /locus_tag="OQQ19_003562"
     CDS             5799..6521
                     /locus_tag="OQQ19_003562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308236.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HCS1805046.1"
                     /translation="MKPARVPQTVVAPDRWGDLPWGELYRKALERQLNPWFTKMYGFH
                     LLKIGNLSAEINCEACAVSHQVNVSAQGMPVQVQADPLHLPFADKSVDVCLLAHTLPW
                     CTDPHRLLRETDRVLIDDGWLVISGFNPISLMGLRKLVPVLRKTSPYNSRMFTLMRQL
                     DWLSLLNFEVLHASRFHVLPWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQ
                     SKNKPRIRQAVGATRQCRKPQA"
     gene            complement(6518..6985)
                     /gene="rnhA"
                     /locus_tag="OQQ19_003563"
     CDS             complement(6518..6985)
                     /gene="rnhA"
                     /locus_tag="OQQ19_003563"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HCS1805047.1"
                     /translation="MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTN
                     NRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVD
                     LWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV"
     gene            7050..7781
                     /gene="dnaQ"
                     /locus_tag="OQQ19_003564"
     CDS             7050..7781
                     /gene="dnaQ"
                     /locus_tag="OQQ19_003564"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706156.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HCS1805048.1"
                     /translation="MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLT
                     GNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAF
                     DIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRT
                     LHGALLDAQILAEVYLAMTGGQTSMAFAMEGETQQQQGEATIQRIVRQASKLRVVFAT
                     DEELAAHEARLDLVEKKGGSCLWRA"
     gene            7914..7990
                     /locus_tag="OQQ19_003565"
     tRNA            7914..7990
                     /locus_tag="OQQ19_003565"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7948..7950,aa:Asp,seq:gtc)
BASE COUNT         2030 a         1968 c         1952 g         2174 t
ORIGIN      
        1 tattaagaag cctcgagtta acgctcgagg tttttttcgt ctgtatatct attattgcca
       61 gaatcgcaaa aatcctctgc attttacgct tttttcctca acagtctgaa gcccataatc
      121 acctcagtta acgaaaatag cattaaaaga ggcatattat ggctatccct gcatttggtt
      181 taggttgaaa gactacgttg ttatttcatc tgtgaaaacg gcgcttgaac ttggttatcg
      241 cgcaattgat accgcacaaa tctatgataa cgaagccgca gtaggtcagg cgattgcaga
      301 aagtggcgtg ccacgtcatg aactctacat caccactaaa atctggattg aaaatctcag
      361 caaagacaaa ttgatcccaa gtctgaaaga gagcctgcaa aaattgcgta ccgattatgt
      421 tgatctgacg ctaatccact ggccgtcacc aaacgatgaa gtctctgttg aaggggttat
      481 gcaggcgctg ctggaagcca aaaaacaagg gctgacgcgt gagatcggta tttccaactt
      541 cacgatccca ttgatggaaa aggcgattgc tgctgttggc gctgaaaaca tcgctactaa
      601 ccagattgaa ctctctcctt atctgcaaaa ccgtaaagtg gttgcctggg ctaaacagca
      661 cggcatccat attacttcct atatgacgct ggcgtatggt aaggccctga aagatgaggt
      721 tattgctcgt atcgcagcta aacacaatgc gactccggca caagtgattc tggcgtgggc
      781 tatgggggaa ggttactcag taattccttc ttctactaaa cgtaaaaacc tggaaagtaa
      841 tcttaaggca caaaatttac agcttgatgc cgaagataaa aaagcgatcg ccgcactgga
      901 ttgcaacgac cgcctggtta gcccggaagg tctggctcct gaatgggatt aagcctctct
      961 gacagctcct ccgggagctg tttttacatg ctcgctaagg aaatcgataa aagcccggat
     1021 gcgcgtactt accgcacggt cgctgtaata gacggcactg aatggcattt ccactggcaa
     1081 cactttatct gccattaact ccaccaattc tccgcgagcg atttctctgt cgatcatgta
     1141 gtcggacaaa cacgcaatcc cgttgccact caggcaaagc tgtttcagtg tttccccact
     1201 attggatgac aaaccgtatt tcagctcatg taattgtcca tcactacagg ctatcggcca
     1261 ggtattgagg gaagcgggtt cagtgaatcc caggcaaaca tgttgcttta aatcgtcgat
     1321 cgtttctggc ttcccgtagc gggaaatata atcgggggag gcgataattt ttcgataact
     1381 gttaaataac ggcctggcac gtaagctgga atccgttaac gtaccagcgc gtatcgcgac
     1441 atccactttt ctttcgatca aattaataat cgtttcggag gagactagcg acaaagtgac
     1501 ttccggatag cgttcacgga aaggcttaat taacggcatc agaaagtgca gcaccactgg
     1561 agttgcggca tcgatccgta acagtccacg cggtgtatta cgcgtctcca taatttctga
     1621 ttctgccgct gccatctcct gcaaaattga ctgtacgcga cgaaaataac gctcgccttc
     1681 ttccgtcagg ctaagttgtc gcgtggtccg attaagcagg ctaacgccaa gtttcatctc
     1741 cagctttttc accgcccggc ttaccgctga gtttgcttgc cctaattgtt ccgctgcccg
     1801 gctaaagctg ccgctttcga cgaccgaaac aaaaatggcg agttcttccg acgtggcttt
     1861 catttttgct cctgttgcaa aatagaagag atattttgaa tttatttgtc attaaaccat
     1921 caggatgcgt gatatgtcat gcgatttaat gttctccata atgagcaaaa ttctgaccgg
     1981 tgtaagcact tgcttacata acaatataca attgctcgtt gaaagagtga gctaaaatcc
     2041 ctataatagt agaaccctcc cgagtgcgga agggttgacg taatagaggt ttcaaagtca
     2101 aaagtgcgaa aaaacaccta tgccatgcgc tatgttgccg gacaacctgc ggaaaggatc
     2161 ttaccgccgg ggtcttttgc gagcatcggc caggcattac cacctgggga accgttaagt
     2221 accgaagagc gtattcggat cctggtgtgg aacatataca aacagcaacg cgctgaatgg
     2281 ttgtcggtat taaagaacta cggcaaagat gcacacctgg tgttattgca ggaagcgcag
     2341 acaacgccag agttagtaca gtttgcgacc gctaactatc ttgccgccga tcaggtaccc
     2401 gctttcgtgc tgccacaaca tccttctggc gtaatgaccc tttcggcggc acatccagtg
     2461 tattgctgcc cgttacgtga acgagaaccc attttgcgtc tggcgaagtc ggcactggtg
     2521 acggtctatc cattacctga cacccgcctg ttgatggtgg ttaatataca cgccgtcaac
     2581 ttcagtctgg gcgtggatgt ctatagtaag cagttacttc ctattggtga tcagatagct
     2641 caccacagcg gcccggtcat tatggcggga gatttcaatg cctggagccg tagaaggatg
     2701 aacgcgttat atcgctttgc gcgggaaatg tcgctgcgcc aggtgcgttt taccgatgat
     2761 cagcgccgtc gggcgtttgg tcgcccgctc gattttgttt tctaccgtgg tctgaacgtc
     2821 agtgaagctt ctgtactggt tacgcgcgct tccgatcaca atccgctact cgttgaattc
     2881 agtcccggca agcctgataa ataaggtatg tcaggtctgc cacagggcag accaacgttt
     2941 ggcgctgcgc aaaacgtgag cgcggtggtg gcgtatgact tatcggccca catgctggat
     3001 gtcgtggcac aagctgccga agcccggcaa ctgaaaaata tcaccacccg ccagggatat
     3061 gccgcaagtc tgccatttgc cgataacgca tttgatattg ttatcagccg ttattctgcc
     3121 catcactggc atgatgttgg tgcagcactg cgagaagtga ataggatatt gaaacctggc
     3181 ggtaggctga ttgtgatgga tgtaatgtct ccgggtcacc cagtgcgcga catctggtta
     3241 caggcggtag aagcattacg cgatacctct cacgtacgaa actacgccag cggtgcgtgg
     3301 ttgacgttaa tcaatgaagc caatcttata gttgataatt taattacaga taagttaccg
     3361 ctggaatttt cttcatgggt cgtgagaatg cgtacgccag aagcgttagt agacgctatt
     3421 cgcatttacc aacagagcgc atcgacagag gtgagaacgt atttttcctt gcagactgat
     3481 ggctctttca ccagtgatat catcatggta gaagcgcata aagcggcata aataaaaaag
     3541 gcaccggggg aatcggtgcc ttttttatta tctggtttgt caggaatctg gcatgttgtt
     3601 gtttttcaca aacaacgtca gcttatcgcc tggttgcaga ttcgcagtgt cactgttcca
     3661 gcgcatcaca tctttgatgt tcacgccgtg gcgtttagca atgcttgaaa gcgaatcgcc
     3721 tttgcgcaca cgatacgtaa tgctatcgct gttgtttgcc aaccgctgtg cgctactgcc
     3781 tgcaccaatc gtcaaacttt ggcctggctt cagcttagat ccgcgcagtt tgttccactg
     3841 ctgcaaatct ttggtgctta cgccgagacg tgaagcgatg cttgaaagcg tgtcgccaga
     3901 gcgtacggtg taaacacggc tgttaagcgg cgtattgtcg gcaaccagcg tcgactgtac
     3961 agcagcaatt tcgcctgaag cgagagaatc acgcagttga tctgcatgct tctttggcac
     4021 catcacgtac tgcgggccac ttgcgcccag cgtggagcct tttacgccag cgttgaatgt
     4081 cttcagcttg ctgacggaaa tccccgccat atctgcaacc ttcgccattt caaccgggct
     4141 gctcaggtgc acacgcgcca gagcacggct ttcatcggtc gttggcagac gtacgccata
     4201 acgcttgctg tttttgagaa tatcactcaa tgccagcatt ttaggcacgt actgcttcgt
     4261 ttcctgcggc aacggtaacg accagaagtc cgtggatttc ccacgcgctt tgttcgtttt
     4321 aattgccttc atgacccgac cttcgccgct gttataagcc gctacggtca gaagccagtc
     4381 gccgtcaaac atcttgttca gacgctgcat catgttcagc gcggcagttg ttgaagcaac
     4441 aacatcgcga cgcgcgtcat aattgcgggt ctgtttcaaa ccataattgc gccccgtgct
     4501 cggaatgatc tgccagatgc ctgcggcatt ggcgccagac gttgcgtgag gatcaaaagc
     4561 gctctccact atgggtagta gtaccagttc cataggcatg ttacgttttt taacttgccc
     4621 tgctatccag tacatatacg gctctgcccg taaagttaca tcgtggagat agctcttatt
     4681 gcgtaaatat ttctgtttct gttcgcgaat ccggtcattt tccggaattc ccatctttag
     4741 ctcgtcgcca atgaaagccc acaagtcacc atctggcgcg atagacgtcc catcgtccat
     4801 ccatcgtgcc tgacttgtaa actttgctgc ttccccttga ccagctgcag aaaggctctg
     4861 tgcgtgctgt tgaacgttgc cggtactctg gcaacccacg agcaggacag aggcgagtaa
     4921 tatcgctttt gccttcatgt gtgtgtcaat agttgcttaa aagacgaccg atcataacgg
     4981 cgaacggagc cgatgacaag aaagttttat cagaacctat ctttctttga ccttaaccat
     5041 gcaaaacgct cttcaggttg ttgcaataat gtttcttcat taattacatt aattaaatca
     5101 atatcttccg ttcttaaaaa aacattaatt tgccgctcat ttttcagaat tacgggtagt
     5161 gttatttgat tttttgcccg taactcctta actttacgat aataatcatt tatggacaaa
     5221 tcgtgcggaa gaatactcaa agcaaacttc atatttgata acgtatattc atgagcacaa
     5281 cataccaatg tatcgtcagg taacgcactt aacttattaa gtgattgata catttgtgat
     5341 gctgtccctt caaacaacct accacaccca ccagaaaaca gcgtgtcgcc gcaaaataga
     5401 taaggtttac tgaagtaaca gatatgtcct aaagtgtgac ccggtgtggc aattacacta
     5461 aattcatgcc ccaaaacgaa ggcagtttcg ccatctttga ctacctgtgt tgttccctta
     5521 tcttgtgtct cttgtggacc atacaccaca atttgcggaa acttttccac cagttctttt
     5581 acgccgccaa cgtgatcgtg atgatggtgg gtgagaaata tggcctccgg ttgccagtta
     5641 ttggcggcaa tggcgtttaa tactggctct gcgtctccgg gatcgacaat caggcagcga
     5701 cctgcttcat cattcaaaac ccagatgtaa ttgtcatcaa aggcgggaat actgttaaga
     5761 ttcatagatt acctcttagt gtgaaacgga aggttgtgat gaaaccggca agagtccctc
     5821 aaactgtcgt ggctcctgat cgctggggcg atttgccctg gggagagctt tatcgcaagg
     5881 cgctggagcg ccagctcaac ccgtggttca ctaaaatgta tggttttcat ctgcttaaga
     5941 ttggcaattt aagcgcagaa atcaattgcg aagcgtgcgc ggtttctcat caagtgaatg
     6001 tttctgcgca aggaatgccc gtccaggtgc aggcggatcc acttcatctt ccttttgccg
     6061 ataaatccgt tgatgtttgt ctactggcac atacattgcc gtggtgcacc gatccgcatc
     6121 gtttattgcg tgaaaccgat cgggtattga ttgatgatgg ctggctggtg attagtggct
     6181 tcaatcccat tagtttaatg ggattacgca aacttgtgcc ggtattgcga aaaacctcgc
     6241 cctataacag ccggatgttt actctgatgc ggcaactgga ctggctctct ttgttgaatt
     6301 ttgaagtgct gcacgccagc cgtttccacg ttctcccgtg gaacaaacac ggaggaaaac
     6361 tattgaatgc gcatattcct gcgcttggtt gcttacaact tattgttgcc cggaaacgga
     6421 ctattccttt aacgctaaac ccgatgaaac agagtaaaaa caagccacga attcgccaag
     6481 cggttggagc cacccggcaa tgtcgtaaac cacaagctta aacttcgact tggtagcccg
     6541 tatcttccag tgtgggattc attgccgcag cacgagccag ttcatcacag cgttcgtttt
     6601 ccgggtgtcc ggcatggcct ttaacccatt cccatttgat ttgatgttgc cctagggcag
     6661 catcaagacg ttgccagaga tcgacatttt ttactggttt tttgtctgcg gttttccagc
     6721 cacgtttttt ccagttatgg atccactggg tgataccctg gcggacatac tggctgtcgg
     6781 tactcaaaat gacttcgcaa tgttctttta acgcctccag cgcgacaata gcggccatca
     6841 actccatacg gttgttggtg gtgcgggtgt agcctgcgct aaaggttttc tcgcgtccgc
     6901 gatagcgtaa aatagcgccg taacccccag gtcctggatt gcccagacac gaaccatcgg
     6961 tgaaaatttc tacctgttta agcatctctg gtagacttcc tgtaattgaa tcgaactgta
     7021 aaacgataag tctgacataa atgaccgcta tgagcactgc aattacacgc cagatcgttc
     7081 tcgataccga aaccaccggt atgaaccaga ttggtgcgca ctatgaaggc cacaagatca
     7141 ttgagattgg tgccgttgaa gtggtgaacc gtcgcctgac gggcaataac ttccatgttt
     7201 atctcaaacc cgatcggctg gtggatccgg aagcctttgg cgtacatggt attgccgatg
     7261 aatttttgct cgataagccc acgtttgccg aagtagccga tgagttcatg gactatatcc
     7321 gcggcgcgga gttggtgatc cataacgcag cgttcgatat cggctttatg gactacgagt
     7381 tttcgttgct taagcgcgat attccgaaga ccaatacctt ctgtaaggtc accgatagcc
     7441 ttgcggtggc gaggaaaatg tttcctggta agcgcaacag cctcgatgcg ttatgtgccc
     7501 gctacgaaat agataacagt aaacgaacgc tacacggggc attactcgat gcacagatcc
     7561 ttgcggaagt ttatctggcg atgaccggtg gtcaaacgtc gatggctttt gcgatggaag
     7621 gagagacaca gcagcaacaa ggtgaagcaa caattcagcg cattgtacgt caggcaagta
     7681 agttacgcgt tgtttttgcg acagatgaag agcttgcagc tcatgaagcc cgtcttgatc
     7741 tggtggagaa gaagggcgga agctgcctct ggcgggcata aatacctgta aaaggcgcta
     7801 aaaatagcgg cttgggcgat ttttgcagca aacgattcaa aagatgagaa aaaccgttga
     7861 cgaagggtga ggcaatccgt aatattcgcc tcgttcccaa cggaacacaa cgcggagcgg
     7921 tagttcagtc ggttagaata cctgcctgtc acgcaggggg tcgcgggttc gagtcccgtc
     7981 cgttccgcca aattcactca tgaaaatgag ttcagagaac cgcaagattt ttaattttgc
     8041 ggtttttttg catttaaatc ccgctatttc ttcggtctat ggttttgtta tgctgtaaat
     8101 gtgttaatca catatggtag acca
//
LOCUS       DAJVSY010000171         8099 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.173, whole genome shotgun sequence.
ACCESSION   DAJVSY010000171 DAJVSY010000000
VERSION     DAJVSY010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8099)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8099)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8099
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.173"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(1..385)
                     /locus_tag="OQQ19_003566"
                     /pseudo
     CDS             complement(1..385)
                     /locus_tag="OQQ19_003566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_151035092.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus outer membrane usher protein"
     gene            complement(571..3879)
                     /gene="icsA"
                     /locus_tag="OQQ19_003567"
                     /gene_synonym="virG"
     CDS             complement(571..3879)
                     /gene="icsA"
                     /locus_tag="OQQ19_003567"
                     /gene_synonym="virG"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane autotransporter IcsA"
                     /protein_id="HCS1805049.1"
                     /translation="MNQIHKFFCNMTQCSQGGAGELPTVKEKTCKLSFSPFVVGASLL
                     LGGPIAFAIPLSGTQELHFSEDNYEKLLTPVDGLSPLGAGEDGMDAWYITSSNPSHAS
                     RTKLRINSDIMISAGHGGAGDNNDGNSCGGNGGDSITGSDLSIINQGMILGGSGGSGA
                     DHNGDGGEAVTGDNLFIINGEIISGGHGGDSYSDSDGGNGGDAVTGVNLPIINKGTIS
                     GGNGGNNYGEGDGGNGGDAITGSSLSVINKGTFAGGNGGAAYGYGYDGYGGNAITGDN
                     LSIINNGAILGGNGGHWGDAINGSNMTIANSGYIISGKEDDGTQNVAGNAIHITGGNN
                     SLILHEGSVITGDVQVNNSSILKIINNDYTGTTPTIEGDLCAGDCTTVSLSGNKFTVS
                     GDVSFGENSSLNLAGISSLEASGNMSFGNNVKVEAIINNWAQKDYKLLSADKGITGFS
                     VSNISIINPLLTTGAIDYTKSYISDQNKLIYGLSWNDTDGDSHGEFNLKENAELTVST
                     ILADNLSHHNINSWDGKSLTKSGEGTLILAEKNTYSGFTNINAGILKMGTVEAMTRTA
                     GVIVNKGATLNFSGMNQTVNTLLNSGTVLINNINAPFLPDPVIVTGNMTLEKNGHVIL
                     NNSSSNVGQTYVQKGNWHGKGGILSLGAVLGNDNSKTDRLEITGHASGITYVAVTNEG
                     GSGDKTLEGVQIISTDSSDKNAFIQKGRIVAGSYDYRLKQGTVSGLNTNKWYLTSQMD
                     NQESKQMSNQESTQMSSRRASSQLVSSLNLGEGSIHTWRPEAGSYIANLIAMNTMFSP
                     SLYDRHGSTIVDPTTGQLSETTMWIRTVGGHNEHNLADRQLKTTANRMVYQIGGDILK
                     TNFTDHDGLHVGIMGAYGYQDSKTHNKYTSYSSRGTVSGYTAGLYSSWFQDEKERTGL
                     YMDAWLQYGWFNNTVKGDGFTGEKYSSKGITGALEAGYIYPTIRWTTHNNIDNALYLN
                     PQVQITRHGVKANDYIEHNGTMVTSSGVNNIQAKLGLRTSLISHSCIDKETLRKFEPF
                     LEVNWKWSSKQYGVIMNGMSNHQIGNRNVIELKTGVGGRLADNLSIWGNVSQQLGNNS
                     YRDTQGILGVKYTF"
     gene            4408..5610
                     /gene="virA"
                     /locus_tag="OQQ19_003568"
     CDS             4408..5610
                     /gene="virA"
                     /locus_tag="OQQ19_003568"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858314.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-tubulin-specific protease"
                     /protein_id="HCS1805050.1"
                     /translation="MQTSNITNHERNDSSWMSTVKSTTEVSWNKLSFCDVLLKIITFG
                     IYSPHETLAEKYSEKKLMDSFSPSLSQDKMDGEFAHANIDGISIRLCLNKGICSVFYL
                     DGDKIQSTQLSSKEYNNLLSSLPPKQFNLGKVHTITAPVSGNFKTHKPAPEVIETAIN
                     CCTSIIPNDDYFPVKDTDFNSVWHDIYRDIRASDSNSTKIYFNNIEIPLKLIADLINE
                     LGINEFIDSKKELQMLSYNQLNKIINSNFPQQDLCFQTEKLLFTSLFQDPAFISALTS
                     AFWQSLHITSSSVEHIYAQIMSENIENRLNFMPEQRVINNCGHIIKINAVVPKNDTAI
                     SASGGRAYEVSSSILPSHITCNGVGINKIETSYLVHAGTLPSSEGLRNAIPPESRQVS
                     FAIISPDV"
     gene            5789..6476
                     /locus_tag="OQQ19_003569"
                     /pseudo
     CDS             5789..6476
                     /locus_tag="OQQ19_003569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612086.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     misc_feature    6069..6185
                     /locus_tag="OQQ19_003569"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01497"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="AL1L pseudoknot; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /pseudo
                     /db_xref="RFAM:RF01497"
     gene            6478..6844
                     /locus_tag="OQQ19_003570"
                     /pseudo
     CDS             6478..6844
                     /locus_tag="OQQ19_003570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            6772..7245
                     /locus_tag="OQQ19_003571"
                     /pseudo
     CDS             6772..7245
                     /locus_tag="OQQ19_003571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708890.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase
                     domain-containing protein"
BASE COUNT         2387 a         1862 c         1611 g         2239 t
ORIGIN      
        1 tacgcttccc catgtgattt gcctcgccac ttcaccgggc tcaggacccc gtaggatctt
       61 caccgaaaaa aatgcatcac cagttgcttt attatttgtt ttaggtagac ctgttactaa
      121 tttataccta ctctgaccaa gtctggataa gaaaggcaca cctgcacatt tctacttgga
      181 aatgttttct tttaccattt tgctcaaaaa tttcaacatc caatattcct cgtacagaac
      241 tactcaagtc ctgaatagaa aaagttccag ctggtacagt agagtcatat attgctcgac
      301 cttgttgaga tacaacaaca cgtgcattag tttctgcaat accagtaatc tgaggcgcat
      361 aaccacgaat atttggcggt agcattcgtt catcgctttc taatgcaatt cctgtgtaac
      421 gccaagcaac agcgcattct ggcgcatgat ctggtaaaca cgtttggcat tgatcgcagg
      481 cataccatca tgtgcacaaa aacccaccga gcttttacac ggtgggtccc agagaaatgc
      541 aggacatcaa cacgccctgc atttttatta tcagaaggta tatttcacac ccaaaatacc
      601 ttgggtgtct ctgtaactgt tattacccaa ttgctgagat acgtttcccc agatgcttag
      661 gttatctgca agacgccccc ccacaccagt tttgagttca atcacattac ggttgcctat
      721 ctggtgattt gacatgccat tcataattac accatattgc tttgagctcc atttccaatt
      781 cacttccaaa aatggttcga acttacgaag agtctcctta tcgatacaac tatgactaat
      841 taaggatgta cgcaatccca attttgcttg aatattattg accccagagg atgtgaccat
      901 agtgccattg tgttcaatat agtcgtttgc ttttacccca tgcctagtta tctggacttg
      961 tggattgaga tacaatgcgt tgtcaatatt attatgagta gtccagcgta tggttgggta
     1021 gatatagcca gcttccaaag ctcctgttat tcctttgctg gaatatttct caccagtaaa
     1081 cccatctcct ttgactgtat tattaaacca accgtactgc aaccaagcat ccatatatag
     1141 acctgttcgt tctttttcat cctgaaacca agaactgtac aaaccggcag tataaccgct
     1201 cacagttcct cgtgaactat aactagtata cttattatga gttttgctat cctgatatcc
     1261 ataagctccc ataataccca catgcaagcc atcatgatca gtgaagtttg tcttcaaaat
     1321 atctccacca atctgataaa ccatcctgtt agctgtggtt tttaattgtc tatcagctaa
     1381 attatgctca ttatgtccac caacagtacg aatccacatg gtggtttcgc tgagctgacc
     1441 tgtagtagga tcaacaatag tgctaccgtg tcggtcatag agagaaggac taaacatcgt
     1501 gttcattgct atcaggttag caatataact gccagcttca gggcgccatg tgtgaatact
     1561 accttcaccc aaattaagtg aagatacaag ctgtgaacta gctcggcgac tactcatttg
     1621 agtagactct tgattgctca tctgttttga ttcttgatta tccatctgac tagttagata
     1681 ccacttattg gtattcagtc cagatacagt gccctgtttc aggcgatagt cataactacc
     1741 agcaacaata cggcctttct gaataaaagc attcttatca gaagaatctg tcgaaataat
     1801 ttgaacacct tcaagagttt tatctccaga gcctccctca tttgtcactg caacataggt
     1861 aataccagac gcatggcctg taatttccag ccggtcagtt ttactgttgt cattgccgag
     1921 aaccgcgccc aaagataata ttccgccctt tccatgccaa ttacctttct gaacataggt
     1981 ctgaccgaca tttgacgaac tattattgag aataacatga ccgtttttct ccagagtcat
     2041 gttacctgtg acaatgacgg ggtcaggcaa aaaaggggca ttaatattat tgattagcac
     2101 agtcccacta tttaataaag tgttaacagt ttggttcatg cctgaaaaat tcaaggtagc
     2161 acctttatta acaataacac cagcggtacg tgtcatagct tcaactgtcc ccatttttag
     2221 aatgcctgca ttgatgttgg tgaaaccaga gtaggtattt ttttccgcca aaatgagagt
     2281 tccctcccct gattttgtta gggattttcc gtcccagcta tttatattat gatggctgag
     2341 attatctgcc agaatagtac taacagtaag ttcagcgttt tctttcagat tgaactctcc
     2401 atgactgtcg ccatctgtat cattccagct caaaccgtag atcaatttat tctggtcact
     2461 gatatagctt tttgtatagt caatagcacc agtagtgagt aacggattga tgatagatat
     2521 attagaaaca ctgaaacctg ttatcccttt atctgcactt agcagtttat agtccttctg
     2581 cgcccagtta tttataatag cttccacttt tacattgttg ccaaatgaca tatttccaga
     2641 agcttccaga ctactgattc cagctaaatt taaagaactg ttctcaccaa aagaaacgtc
     2701 acctgaaaca gtgaatttgt tacctgatag tgaaacagtt gtacaatcac cagcacataa
     2761 atcaccttca atagttggtg tggtcccagt gtaatcattg ttgataattt tcagaatgga
     2821 tgaattgtta acctgtacat caccagtaat gacagaacct tcatggagta ttaatgaatt
     2881 gtttccacca gtgatgtgga tagcattacc tgctacattt tgtgttccat catcttcttt
     2941 acctgaaatt atatatccgc tattagcaat ggtcatattg ctaccattta tagcatcccc
     3001 ccaatgtcca ccattaccgc ctaaaatagc tccattgttg attatagaca ggttatctcc
     3061 tgtgatagca ttaccaccgt agccatcata accataaccg taagcagcac ctccgttgcc
     3121 tccagcgaac gtgcccttat tgattacaga gaggctgctt cctgtgatgg catcacctcc
     3181 attaccgcca tcaccctcac cataattgtt acctccatta ccaccggaaa tagtcccttt
     3241 gttgattatg ggtagattga ctcctgtgac ggcatcacct ccattccccc catcactatc
     3301 actataacta tcgccaccat gtccacctga aataatttct ccatttatta taaacagatt
     3361 gtctcctgta acagcctcac caccatcacc gttatggtca gcaccgctac cgccgctacc
     3421 accaagaatc atgccttgat tgattataga caagtcagat ccggtaatag agtcaccacc
     3481 attaccgcca caactattac catcattatt atcaccagca ccaccatgac ctgcgctaat
     3541 cataatatca gagttaatcc gtagcttagt tctagatgca tgagaggggt tggaagaagt
     3601 tatataccac gcatccattc catcttcacc agctcccaag ggagaaagtc catcaacagg
     3661 tgttaataat ttttcataat tgtcctctga aaaatgaagt tcttgagtac ccgaaagagg
     3721 aatagcaaaa gctattggcc ccccgagcaa cagggatgca ccaacaacaa aaggagaaaa
     3781 agacaatttg catgtttttt cctttaccgt aggtaattct ccggcccccc cctgtgaaca
     3841 ttgggtcata ttacaaaaaa atttgtgaat ttgattcatg cactatatta tcagtaagtg
     3901 gttgataaac ccctaaaaag attccgtttt atccggaata aagggacgat atatgcaaaa
     3961 acatattaaa caaagcctca accaaaacat gagagctgtg ttatatatca atgcaacggg
     4021 agaaatttac ctgtgtcttg ctttgaaaaa aagaggggga aagctatatg ttcgataata
     4081 aattaataat tttactatga tagtctgctt cagaccgcaa cttttcagtt ctttctgtac
     4141 gcttgcccaa agtttaacca ctttgttttt ctatacaccc aatggttcta tctgcccctt
     4201 gatgttaatc cccaaagcca ataacatgaa tgtattcata tcacaacttt cctaccagac
     4261 tctccaatgc aataactgca taattgtttt tagtggaaat gtatcgtttt cttaaagaga
     4321 agaataacat tccattttat tatgttccca atttaattat attaatatat attggcatca
     4381 ataggaaaat acatcaggag aaatcaaatg cagacatcaa acataactaa ccatgaaaga
     4441 aatgactcat catggatgtc aactgtcaaa tcaactacag aagtaagttg gaataaattg
     4501 agtttttgtg acgttttact gaaaataata actttcggaa tatattctcc acacgaaact
     4561 ctagccgaaa aatatagcga aaaaaaacta atggatagtt tctcaccatc actatcacaa
     4621 gataaaatgg acggagagtt tgcccacgca aacatagatg gcatttcaat acggctatgc
     4681 cttaacaaag gcatatgttc ggttttttat cttgatggag ataaaataca atccactcaa
     4741 ctttcatcaa aagaatataa taacttgtta agttcactcc cccccaaaca attcaactta
     4801 ggaaaagtac atactattac agctccggta tcagggaatt ttaaaactca caagcctgca
     4861 ccagaagtta ttgaaacagc cattaattgc tgtacatcga taataccaaa cgatgattac
     4921 ttccccgtta aagacactga ttttaatagt gtttggcatg atatttacag agatattcga
     4981 gcatctgaca gcaatagtac aaaaatatat ttcaacaata ttgaaatacc actaaaatta
     5041 attgcagatc taattaatga gttaggaatt aatgaattca ttgatagcaa aaaagagctt
     5101 caaatgctaa gttacaacca attaaataaa ataatcaatt caaacttccc ccaacaagac
     5161 ctatgttttc aaacagaaaa acttttgttt acttcactct ttcaagaccc tgcatttata
     5221 tccgcactaa catctgcatt ctggcaatct cttcacatca cgtcttcctc tgtggaacac
     5281 atatatgccc aaattatgtc cgaaaacata gaaaacaggc ttaatttcat gcctgaacaa
     5341 cgagttatta acaattgtgg acatattata aaaatcaacg cagttgtccc taaaaacgac
     5401 actgcaatct ctgcctctgg ggggagggct tacgaagtta gctcatcaat attaccatcg
     5461 cacataacat gtaatggtgt tggtattaat aaaatagaaa caagctatct cgttcatgct
     5521 ggaacacttc caagcagtga agggcttcgc aatgctatcc ctccagaaag tcgtcaagta
     5581 tcatttgcca tcatatctcc tgatgtttaa gccaatatta tattggctgc cagactgtaa
     5641 aaaaacgttc ttcagaacag ctctataaac tattaaacca aagctaaaag gatggggacc
     5701 aatagaatct cagcccatcc tttttatatc attatgaacc gccccggaaa tcctggagac
     5761 taaactccct gagaaagagg taaacaggat gactaaaaat acacgttttt cccctgaagt
     5821 ccgtcaacgg gcagttcgta tggttctgga aagtcagggc gaatatgact cacaatgggc
     5881 agcgatttgt tccattgctc caaagattgg ctgtatactg gagactctgc gtgtctgggt
     5941 acgccagcat gagcgggata ccgggggcgg tgaggtaggc tcaccaccgc tgaacgtcag
     6001 cgtctgaaag agccggaacg tgaaaatcgt gaactgcgcc gcagtaacaa tatccttcgc
     6061 ctggcttccg cttattttgc aaaggcggag ttcgaccgcc tctggaaaaa ataatgccac
     6121 tgctggataa gctgcgtgag cagtacgggg tcggaccggt atgcagtgaa ctgcatattg
     6181 ccccgtcaac gtattaccac tgtcagcaac agcgacatca tcatgataaa cgcagtgccc
     6241 gtgcgcagcg cgatgactgg ctgaagaaag agatactgcg cgtatacgat gagaatcatc
     6301 aggtatacgc tgtgcgtaaa gtcaggcatc agttgttacg ggaaggtatc agagtggcca
     6361 gatgcactgt ggcacgtctc atggcggtta tggggcttgc cggtgttctc cggggtaaaa
     6421 aggtccacac taccgtcagc cggaaagccg ttgccgcagg cgaccgcgta aaccgtcatc
     6481 aaggcaatgt gccgcgtact ccgggtggcc cgcagcggct ggtatacgtg gtgtcagcgg
     6541 cggacaagga taaacacacg tcagcagttc cgtcagcact gcgacagcgt tgtccgcaag
     6601 gcttttaccc agtccagcgt tacggtgccc cacgcctgac ggatgaactg tgtgctctgg
     6661 ttaccacttt aacgtaaaaa ccgtggcagc cagtctgcgc cgtcaggaac tgagcgcaaa
     6721 agcctcccag aagttcagcc cgatcagtta ccgtgcacac ggcctgcctg tatcagaaaa
     6781 tctgctgacg caggattttt acgccagtgg cccgaaccag aagtgggcgg gagacatcac
     6841 gtactattac agctcaccga ctgcggggaa acacggggcg ccgggttatt gaaggtgacc
     6901 tgtccagcta cttcgacaca gtacatcacc ggctgctgat gaaagccgtc tgccgcagga
     6961 tcagtgatgc acgttttatg agactgctgt ggaaaacgcc gtgttgatgt tggtctcttc
     7021 cgggcggtca gtgaaagtat gccacagggc ggtgtgatct cgccgttgct gtcgaacatc
     7081 atactgaatg agttcgacca gtatctgaat aaacgctacc tgagtggaaa agccagaaag
     7141 gatcgctggt actggaatca cagtatccag cgaggccgaa gtactgctgt caaagaaaac
     7201 tggcaatgga aacctgccgt tgcttactgt tgctatgccg atgactgtgt gccacgaagg
     7261 cgcgtcctgg ggacgtgagt ccctgtgcag ccatgcggca caagagatga gggaaggccc
     7321 ctcggtgtcg gcgtgcaggc gcaggcacca aaccatccac tgctgctgca tttaagagat
     7381 gtggtggtga gcgagatggg aaaaggtcgg acgtgagccg atcaggtatg gttcgaagag
     7441 acgaacgaaa gtgaaccgct gatgatgtgt cgaaagcata tagatgatgt caaaacaatg
     7501 gtggagtcgt tcctgtggga tatgtttact gcctgcgcgg catccggcat aaaagcggcg
     7561 tgaagtcgat tcaggctctt gtggggaacg tggacctgtc accccgatgt gaagggagaa
     7621 gcgcaagtgg aagccccatg agcgccagag taccaatgcg gggtacaggg acggagcacc
     7681 aagcgattgc gcagtaaaca tgcttgacaa cttaattggg gccccctctt ccttttatgg
     7741 tgtaattgtt tgattgaata cttccgggga tttcagtatg aaatgaagta tatttaatat
     7801 actttacaaa aagtttgtat tagtggaata aggacaatag tttatccaaa ctgccaagcc
     7861 cctttattat aagtaagatc tggtactaaa taagcgttct aaaccgaccc gagtaggcgg
     7921 cctgacggct gcggcttgtc atggcctgtg attaccgtta taaaaacaga caatatcatt
     7981 gtctttcagg tagttatatg gcccgttcag ctaaaccacg caaacgaaaa cctgcacctc
     8041 aaagaagcaa actcctccac tatgtcgtaa aacttcacga agatgatttt ttttgacga
//
LOCUS       DAJVSY010000172         7818 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.174, whole genome shotgun sequence.
ACCESSION   DAJVSY010000172 DAJVSY010000000
VERSION     DAJVSY010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7818)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7818)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7818
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.174"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            268..411
                     /locus_tag="OQQ19_003572"
     CDS             268..411
                     /locus_tag="OQQ19_003572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YobF family protein"
                     /protein_id="HCS1805051.1"
                     /translation="MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSMLCLRAK
                     KTI"
     gene            424..633
                     /gene="cspE"
                     /locus_tag="OQQ19_003573"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
     CDS             424..633
                     /gene="cspE"
                     /locus_tag="OQQ19_003573"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator/RNA stability
                     regulator CspE"
                     /protein_id="HCS1805052.1"
                     /translation="MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTL
                     AEGQNVEFEIQDGQKGPAAVNVTAI"
     gene            799..1608
                     /gene="rlmA"
                     /locus_tag="OQQ19_003574"
     CDS             799..1608
                     /gene="rlmA"
                     /locus_tag="OQQ19_003574"
                     /EC_number="2.1.1.187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (guanine(745)-N(1))-methyltransferase"
                     /protein_id="HCS1805053.1"
                     /translation="MSFSCPLCHQPLSREKNSYICPQRHQFDMAKEGYVNLLPVQHKR
                     SRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHA
                     FADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK
                     AEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELCY
                     PMRLRGDEAVALLQMTPFAWRAKPEVWQTLAAKEVFDCQTDFNIHLWQRSY"
     gene            complement(1605..2171)
                     /gene="mntP"
                     /locus_tag="OQQ19_003575"
     CDS             complement(1605..2171)
                     /gene="mntP"
                     /locus_tag="OQQ19_003575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP"
                     /protein_id="HCS1805054.1"
                     /translation="MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFG
                     AVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRR
                     HGFWLLVTTAIATSLDAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGS
                     IIGKKAEILGGLVLIGIGVQILWTHFHG"
     gene            complement(2599..3057)
                     /locus_tag="OQQ19_003576"
     CDS             complement(2599..3057)
                     /locus_tag="OQQ19_003576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF986 domain-containing protein"
                     /protein_id="HCS1805055.1"
                     /translation="MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGR
                     IDSVIFVGLIVILIYNNVTNHGALITTWLLSALALMGFYIFWIRVPKIIFKQKGFFFA
                     NVWIEYSRIKAMNLSEDGVLVMQLEQRRLLIRVRNIDNLERIYKLIVLTQ"
     gene            complement(3112..3963)
                     /gene="manZ"
                     /locus_tag="OQQ19_003577"
     CDS             complement(3112..3963)
                     /gene="manZ"
                     /locus_tag="OQQ19_003577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020804907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HCS1805056.1"
                     /translation="MVDTTQTTTEKKLTQSDIRGVFLRSNLFQGSWNFERMQALGFCF
                     SMVPAIRRLYPENNEARKQAIRRHLEFFNTQPFVAAPILGVTLALEEQRANGAEIDDG
                     AINGIKVGLMGPLAGVGDPIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNLVRLA
                     TRYYGVAYGYSKGIDIVKDMGGGFLQKLTEGASILGLFVMGALVNKWTHVNIPLVVSR
                     ITDQTGKEHVTTVQTILDQLMPGLVPLLLTFACMWLLRKKVNPLWIIVGFFVIGIAGY
                     ACGLLGL"
     gene            complement(3976..4776)
                     /gene="manY"
                     /locus_tag="OQQ19_003578"
     CDS             complement(3976..4776)
                     /gene="manY"
                     /locus_tag="OQQ19_003578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIC"
                     /protein_id="HCS1805057.1"
                     /translation="MEITTLQIVLVFIVACIAGMGSILDEFQFHRPLIACTLVGIVLG
                     DMKTGIIIGGTLEMIALGWMNIGAAVAPDAALASIISTILVIAGHQSIGAGIALAIPL
                     AAAGQVLTIIVRTITVAFQHAADKAADNGNLTAISWIHVSSLFLQAMRVAIPAVIVAL
                     SVGTSEVQNMLNAIPEVVTNGLNIAGGMIVVVGYAMVINMMRAGYLMPFFYLGFVTAA
                     FTNFNLVALGVIGTVMAVLYIQLSPKYNRVAGAPAQAAGNNDLDNELD"
     gene            complement(4839..5810)
                     /gene="manX"
                     /locus_tag="OQQ19_003579"
     CDS             complement(4839..5810)
                     /gene="manX"
                     /locus_tag="OQQ19_003579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HCS1805058.1"
                     /translation="MTIAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAET
                     LIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVETL
                     MARDDDPSFDELVALAVETGREGVKALKAKPVEKAAPAPAAAAPKAAPTPAKPMGPND
                     YMVIGLARIDDRLIHGQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTA
                     HVVDVAKMIRVYNNPKYAGERVMLLFTNPTDVERLVEGGVKITSVNVGGMAFRQGKTQ
                     VNNAVSVDEKDIEAFKKLNARGIELEVRKVSTDPKLKMMDLISKIDK"
     gene            6273..>7818
                     /gene="yoaE"
                     /locus_tag="OQQ19_003580"
     CDS             6273..>7818
                     /gene="yoaE"
                     /locus_tag="OQQ19_003580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family cation transport protein YoaE"
                     /protein_id="HCS1805059.1"
                     /translation="MEFLMDPSIWAGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRD
                     KARLLGLSLALIMRLGLLSLISWMVTLTKPLFTVMDFSFSGRDLIMLFGGIFLLFKAT
                     TELHERLENRDHDSGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAA
                     VVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAI
                     GFSIIIEVFNQIARRNFIRHQSTLPLRARTADAILRLMGGKRQANVQHDADNPMPIPE
                     GAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLGVDEIREQLLSSPHSLFPV
                     CRGELDEIIGIVRAKELLVALEEGVDVAAIASASPAIIVPETLDPINLLGVLRRARGS
                     FVIVTNEFGVVQGLVTPLDVLEAIAGEFPDADETPEIITDGDGWLVKGGTDLHALQQA
                     LDVEHLADDDDIATVAGLVISANGHIPRVGDVIDVGPLHITIIEANDYRVDLVRIVKE
                     QPAHDED"
BASE COUNT         1986 a         1913 c         1941 g         1978 t
ORIGIN      
        1 gcactatgta ataacttctc ccactggcct ggaacaactg aacttattga actatgttag
       61 aaaatacgcc agtttaagta tctgcctgaa ctggcaaggt taagcacaat gatatatcgg
      121 cgcgtattcc gttgcataag tgtgcaaaaa aagtggaaga cgtatcgaga tttgtgcgtc
      181 tgatcgagac atgtttaaaa atggcttgcc ataattaacg ttgtatgtga taacagattt
      241 cgggttaaac gaggtacagt tctgtttatg tgtggcattt tcagtaaaga agtcctgagt
      301 aaacacgttg atgttgaata ccgcttctct gccgagcctt atattggtgc ctcatgcagt
      361 aatgtgtcag ttttatctat gttatgcctg cgggcgaaga aaacaatcta aggaattttt
      421 caaatggcaa agattaaagg tcaggttaag tggttcaacg agtctaaagg ttttggcttc
      481 attactccgg ctgatggcag caaagacgtg ttcgtacact tctccgctat ccagggtaat
      541 ggcttcaaaa ctctggctga aggtcagaac gttgagttcg aaattcagga cggccagaaa
      601 ggtccggcag ctgttaacgt aacagctatc tgatcgaatc cactgatctg aagtgtgaat
      661 acgcttcaat ctcgctataa agcctcgtcg aatgcgaggc tttttactat gctttatctt
      721 cgctcctggc gttcggatat ttgcccgccg cgtgattcgc gttacacttg cggcctttag
      781 tatcctgccg gagttgtcat gtctttttcc tgtccacttt gccatcagcc tctttcgcgt
      841 gaaaaaaaca gctatatctg tccccagcga catcagtttg atatggcgaa agaagggtat
      901 gtcaatctgc tgcccgttca gcataaacgg tctcgtgatc cgggcgacag cgcggaaatg
      961 atgcaagcac gccgcgcatt cttagatgcc ggacattatc agccgctgcg tgatgcaatt
     1021 gtcgcccaac tgagggaacg gcttgatgat aaggccacgg cggtgctgga tattggctgt
     1081 ggtgaagggt attacacaca cgcatttgcc gatgcgttgc ccgaaatcac cacgtttggt
     1141 ctggatgttt cgaaggtagc gataaaagcg gcggcgaaac gctatccgca ggtcactttt
     1201 tgtgtcgctt ccagccaccg tttgccgttt tccgatacca gtatggacgc cataatacgt
     1261 atttacgcgc cgtgtaaagc agaagaatta gcacgagtag tgaagcccgg cggctgggtc
     1321 attactgcca cgccgggacc gcgacatttg atggagctga aggggctgat ttacaatgaa
     1381 gtacatcttc atgcacctca tgcagaacaa ctggaaggtt ttacattaca gcagagtgcg
     1441 gagttgtgtt atccgatgcg tcttcgcggt gatgaagccg tcgcattatt gcagatgacg
     1501 ccgtttgcct ggcgtgcgaa gccagaagtc tggcaaacac tggcagcaaa agaagtgttc
     1561 gactgccaga cggactttaa tattcacctc tggcagcgtt cttattaacc gtggaagtgc
     1621 gtccagagga tctggacgcc gatgccgatc agtaccagcc cgccgagaat ttccgctttt
     1681 ttcccaataa ttgagccgat aaagcgacca accatcatcc ctaatgttga cataatcaag
     1741 gttgcacaac caatggccaa tgcggtcgcg ataatgttga cctgcaggaa agcaagacca
     1801 acacccacag ccatggcatc caggctggtg gcaatcgcgg tggttaccag tagccagaaa
     1861 ccgtgtcgac ggcgcggctc ttcatcttca tcatctgcgc cacgaaaacc ctcaataatc
     1921 attcgcccgc cgaggaatat cagcagcaca aacgcaatcc agtggttcca ttcaaggaca
     1981 aaccggctgg ctaacatgcc cattccccag ccgatcagcg gcgtcagggt ttcgacggca
     2041 ccaaaaataa ggccggttcg caatgcttca gaaaatttcg gtttatggag ggtggcacct
     2101 ttaccgattg atgcagcaaa tgcatccatc gacataccaa acgcaagaag aacagtagca
     2161 gtgatattca tgacaatgtc ctgaccgggg tatccataaa acacatcatc gcccccagca
     2221 aacatgcata catgaacaac aagccgtgat ggtttttgcg ttcatgcagg catagcgatt
     2281 gatgtgcata tggtctcgcc tgactgaaag tattcagtcc gtacgtgcca cgttttgcaa
     2341 cgagtatgtt gacacgtaca tttccggaat ctggaaatcg gctactcccc aaatgagggc
     2401 gcaaccttaa catattttga gaatataaaa caactgttgg aatatattat ttcattgctt
     2461 tattgataac gaattcattt agatttatat atcaatgaaa cgttaaaata aataacaaat
     2521 aagggaagag gtaatatagc ctaagctatg tctgattatt aaaaatacac taaacatagc
     2581 tttggctaaa ttcataactt attgagttaa aacgataagc ttataaattc tttccagatt
     2641 gtcgatattt cgaacgcgga ttaacagccg acgctgttct aattgcatca ccaacacgcc
     2701 atcttccgac aagttcatcg ctttgattcg gctatattca atccagacat tggcgaagaa
     2761 aaaacctttt tgtttaaaga tgatcttcgg aacgcggatc cagaatatat aaaaacccat
     2821 cagagccagt gcgcttaata accatgtcgt tattaatgca ccatgattcg tgacgttgtt
     2881 atagataaga atgacaatca atccgacgaa gataacgcta tcgatgcgac cacgccggag
     2941 caaaggaatt gccagcaggg tggggccgtt acggcggggc atgatgaact gatcgtagat
     3001 cgcgaaggcc aggagtgcgg cgatgaaaag aatcagtacc aggtccgtga ttgtcattaa
     3061 tcctccagat aaaaaaacgg ggccaaaagg ccccggtagt gtacaacagt cttacagtcc
     3121 cagcaggccg caagcgtaac cagcgatacc gatgacgaag aagccaacga tgatccacag
     3181 cgggttaact tttttgcgca gtagccacat acaagcaaag gtcagcagca gtggtaccag
     3241 gcctggcatt aactggtcca gaatagtctg gacagtagta acgtgttctt tgcccgtctg
     3301 gtcagtaatg cgagagacaa ccagcgggat gttgacatgt gtccacttgt taaccaatgc
     3361 ccccatgaca aacaggccga ggatagacgc cccttccgtc agtttttgca ggaagccacc
     3421 acccatatct ttaacgatat cgataccttt ggagtaacca tacgctacgc cgtagtaacg
     3481 ggttgccaga cgcaccaggt taaacaggat gaagaacagc agcggaccta acaggctgcc
     3541 gctcatcgcg ataccggcac ccagtgctgc aaataccgga cgtacggttc cccagaagat
     3601 cgggtcgcct acaccagcca gcggccccat caaaccgact ttgataccgt tgatagcacc
     3661 gtcgtcgatc tctgcgccat tagcacgctg ttcttccagc gccagggtta cgccgagaat
     3721 cggcgcagcc acgaacggct gggtgttaaa gaactccagg tgacggcgaa tagcttgttt
     3781 acgagcttcg ttgttctcag ggtagaggcg acgaattgcc ggtaccatag agaagcagaa
     3841 acccagtgcc tgcatacgtt cgaagttcca tgaaccctgg aagaggttag aacgcaggaa
     3901 gacgccacga atatcacttt gagtgagttt tttctcggtg gtagtttgag ttgtatcaac
     3961 catttcgctc acctgttagt ccagttcgtt atcgagatcg ttgttaccag cagcctgagc
     4021 aggcgcaccg gctacgcggt tgtatttcgg gctaagttgg atgtagagca ctgccataac
     4081 agtaccgatc acacccagag caaccaggtt aaagttggtg aatgctgcgg ttacgaagcc
     4141 gaggtagaag aacggcatca ggtagccagc acgcatcatg ttgataacca tcgcataacc
     4201 aaccaccacg atcatgccac cggcgatatt cagaccattg gtcaccactt ccggaatcgc
     4261 attcagcatg ttctgtactt cgctggtacc aacagacagc gcaacgatga cggccggaat
     4321 agccacacgc attgcttgca ggaacagaga agaaacgtgg atccaggaaa tcgctgtcag
     4381 gttgccgtta tcagcagcct tatccgcagc gtgctggaaa gcaacggtaa tagtacgaac
     4441 gatgatggtc agtacctggc ccgcagcggc cagagggatt gccagtgcga tacctgcacc
     4501 aatgctctga tgacctgcga taaccagaat ggtagaaatg atagaagcca gagcggcgtc
     4561 aggcgcaact gcagcaccga tgttcatcca gcccagcgcg atcatttcca gcgtaccacc
     4621 gataataata ccggttttca tatccccaag aacgataccc accagggtac acgcgattag
     4681 cggacggtga aactgaaatt catcgaggat tgatcccata cctgcgatac aggctacgat
     4741 aaataccagc acaatttgaa gagtggtaat ctccattgta cttctcctgt ttacgtaaga
     4801 cttaagtgtg aaaactgagt gataatcaac acaatacgtt acttatcgat tttgctgatc
     4861 agatccatca ttttcagttt cggatcggtg gaaaccttac ggacttccag ctcaataccg
     4921 cgcgcattca gtttcttgaa cgcctcgata tctttttcat caaccgaaac cgcgttattc
     4981 acctgggttt taccctgacg gaatgccata ccaccgacgt taacagaggt gattttcacg
     5041 ccgccttcaa cgagacgctc tacatctgtt gggttggtaa ataacagcat tacgcgttcg
     5101 ccagcatatt tcgggttgtt gtagacgcga atcattttgg caacatcaac tacgtgtgct
     5161 gttacgcccg gaggtgcaac ctgggtgagc agtgtcttac gaacggtatc cgcagccact
     5221 tcatcactaa caacaataat acgggagaca ttggtttctt tggtccagcg ggtggcgacc
     5281 tgaccgtgaa tcagacggtc gtcgatacgc gcaaggccaa taaccatgta gtcgtttggc
     5341 cccattggtt ttgccggagt tggagccgct tttggtgctg cggcagcggg tgctggcgcg
     5401 gctttttcaa ccggtttggc tttcagtgct ttcacgcctt cacggcctgt ttctactgcc
     5461 agcgcaacca gttcatcaaa gcttgggtca tcatcacgag ccattaacgt ttccacgagc
     5521 attggaatgt taacgcctgc aatgacttca taatgctctt tgtcgacgac aatgcggctg
     5581 gcagcattga acgggctgcc tccccatgta tcaacgagaa acagcacgcc tttagtggtg
     5641 tcgagttttg ccaactgagc gttgtacttt tcaatcagcg tttcggcatt ttcacctgga
     5701 acgaaatcga tccagccgac gttttcctgc tcgcctaaca gcatttctgc cgttttaagc
     5761 aactgctctg cagcccaacc atgtgtgcct ataacaatag caatggtcac ttgctacctc
     5821 ctttattatc gttaacacct caacgtgcca gatgtatttt tgaatcgtcg tccacaatcg
     5881 aatcgattca gataagggct acaaccaaaa acccctgcgt ttcgcgattt attttagata
     5941 tcgaaaaaat tattttatgt gatgaagatc cgtaatttaa ctttcgatta gcagaaattt
     6001 cgaaaggtaa aatatccttg tcacattcgt ttgcaaagga aggtaaatct ttgccaaatc
     6061 agaggcgtct ctgatatgtt taactcccgt ttaacaacca tggagtatag ggcagtagcc
     6121 cgcagtatgg atcgtcaccg acgtcatttc agcatcaggc cttttaacgc ctgcctttct
     6181 ggcactctat gccgcacctt tcgtttgcat tttgtcgtta cgcctgcatt atttctggcg
     6241 tcgaatagct attccttaag caggagcttg tcatggaatt cttaatggac ccctcaattt
     6301 gggcggggct actcacgctt gttgttctcg aaattgtgct gggtatcgat aacctggtct
     6361 tcatcgccat tcttgctgac aaactgccgc caaaacaacg cgataaagcg cgtttgctgg
     6421 ggttatcact ggcgctgatt atgcgtctgg ggctgctgtc gctgatttca tggatggtca
     6481 cgctgaccaa accgctattt accgtcatgg atttctcctt ctccggacgc gacctgatta
     6541 tgttgttcgg ggggatattc ttgctgttca aagcaacaac cgaactgcat gaacggctgg
     6601 aaaaccgcga tcatgattcc ggccacggta aaggctacgc cagtttctgg gtggtcgtca
     6661 cacagattgt catccttgac gccgtcttct cgttggatgc ggtaattact gcagtaggga
     6721 tggttaacca tctgccggtg atgatggcgg cggtagtgat tgcgatggcg gttatgttgc
     6781 tggcatccaa accgctgacg cgattcgtta accagcaccc cacggtggtg gtgctctgtc
     6841 tgagcttcct gttaatgatt ggtcttagtc tggtggcaga aggtttcggt ttccacattc
     6901 cgaaaggtta cctgtatgcc gcgattggct tctcgatcat catcgaagtg tttaaccaga
     6961 ttgcgcgtcg caactttatt cgccaccagt cgactttgcc gctgcgagcg cgtactgccg
     7021 atgccatcct gcgtttgatg ggcgggaaac gtcaggccaa tgttcagcac gatgccgata
     7081 acccgatgcc gatcccggaa ggtgcatttg ccgaagaaga acgttacatg attaacggcg
     7141 tactgacgct ggcgtcgcgt tctctgcgcg ggatcatgac gccgcgcggt gaaataagct
     7201 gggttgacgc taatctcggg gtcgatgaaa tccgcgagca actgctctct tcaccgcaca
     7261 gtctgttccc ggtatgtcgc ggtgaactgg atgaaatcat cggtattgta cgtgctaaag
     7321 aactgctggt ggcgctggaa gagggcgttg atgtggcggc gattgcttcg gcgtctccgg
     7381 cgattatcgt cccggaaacc ctcgatccga tcaacctgtt gggcgtgctg cgtcgtgctc
     7441 gcgggagctt tgttatcgtg accaacgagt ttggtgtggt acaaggtctg gtcacgccgc
     7501 tggatgtgct ggaagccatt gcgggtgaat tcccggacgc tgacgaaacg ccggaaatca
     7561 ttactgatgg tgacggctgg ctggtaaaag gcggtacaga tttgcatgcc ttgcagcagg
     7621 cgcttgatgt tgagcacctt gccgatgacg atgatatcgc gacggtcgcg ggcctcgtga
     7681 tctcggcaaa tggtcacatt ccccgtgtgg gcgatgtgat tgatgtaggg ccactgcata
     7741 tcaccatcat tgaagccaat gattatcgtg ttgatctggt tcgcattgtt aaagagcaac
     7801 cggcgcacga tgaagatg
//
LOCUS       DAJVSY010000173         7749 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.175, whole genome shotgun sequence.
ACCESSION   DAJVSY010000173 DAJVSY010000000
VERSION     DAJVSY010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7749)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7749)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7749
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.175"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            101..307
                     /locus_tag="OQQ19_003581"
     CDS             101..307
                     /locus_tag="OQQ19_003581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000387479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family phage regulatory protein"
                     /protein_id="HCS1805060.1"
                     /translation="MEAIRKIIFRQEVKKIIHIKADSTLQSMINAGEFPQGFRVGLRR
                     RGWYEDDVLAWQKEREQEARGTAA"
     gene            322..987
                     /locus_tag="OQQ19_003582"
     CDS             322..987
                     /locus_tag="OQQ19_003582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001329530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805061.1"
                     /translation="MTNTKKAAPIWSRLSEQLTRCALCVYDPKHKHGDDSRYQAGGQC
                     NQSGSVRCHTCNERFSLYSLRNCSRAKAHGANLSDSCSIFLRRLFRAGDNVLVNSLSV
                     IVLSCIAMRRNTSHHGADSFYPLGSMPRRFSSVRPNSLSQLARLMPSLCASLSNCSFS
                     SGEIRILNCGDCPSPLGLLSRLIIDKWSPIELAFPLLGGHLNTRALKKAKPRKCHYHS
                     QGF"
     gene            1013..1213
                     /locus_tag="OQQ19_003583"
     CDS             1013..1213
                     /locus_tag="OQQ19_003583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000226783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host cell division inhibitor Icd-like protein"
                     /protein_id="HCS1805062.1"
                     /translation="MVAVNHIPHLVHTQTAFVWRFLALSAGESQIIHVTAWTEREARS
                     RCPSGCVAVFAARIRQGETYAQ"
     gene            1203..1424
                     /locus_tag="OQQ19_003584"
     CDS             1203..1424
                     /locus_tag="OQQ19_003584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001372127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805063.1"
                     /translation="MHNKTTPNAAAAALTTLMHALIDIECTAELAQGEEQKDRTQFAL
                     ECIRYIATRSLNDAKNILVADCENGGGYA"
     gene            1417..1650
                     /locus_tag="OQQ19_003585"
     CDS             1417..1650
                     /locus_tag="OQQ19_003585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001373432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805064.1"
                     /translation="MRDDRFNSLKQEFPGVPDDAADALSSMPELIRAAFFLLSTREYK
                     STGLDVLNIAADYAEYVAEARYRRKFPEDVSHA"
     gene            1643..1876
                     /locus_tag="OQQ19_003586"
     CDS             1643..1876
                     /locus_tag="OQQ19_003586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805065.1"
                     /translation="MRDIYHETIDRAFLALSHSENMLEILRIWLETLGDNERDKQKSR
                     IATALITLLEPVIMELQEIDLLHDRYKEQHTGE"
     gene            1882..2181
                     /locus_tag="OQQ19_003587"
     CDS             1882..2181
                     /locus_tag="OQQ19_003587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4222 domain-containing protein"
                     /protein_id="HCS1805066.1"
                     /translation="MKLKYSGLTASGNTHPKFTRGDIYRDQYGGTVMIKGVEERRVTY
                     RREGYEYDCVMPVYQFRRDFSLVQTAPHNVPTSNARARANIQKLKTMINGFRGKK"
     gene            2178..3578
                     /locus_tag="OQQ19_003588"
     CDS             2178..3578
                     /locus_tag="OQQ19_003588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000833619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCS1805067.1"
                     /translation="MKSAPNLKKQPYDKMTEVIIFAGSDAWAHAKQWQEQDGRLAGDN
                     VPPVVLADDQLDELADLRIIDEGRYCVRLYKAGHIRPSNINAIAHKLAAAGVTDANYY
                     PEGMHSHMRENWREYLERVRGKEPVEEKNHQRKTTLPMSVGSTGYDTQLDYVVKGIIP
                     AVSLCSIYGASGSYKSFLAGSWACHVATGRQWGGRRVAHGAVLYVVGEGGIGVPRRVK
                     AWEVVHDEQVKNLYLVNRPIFPAAPLDVDEMVIAARQVERETGKPVRMIILDTLARCF
                     GGNDENDSRDMGAFIRGCDELKRRTGATVLVVHHSGKDETKGARGSSAFRASLDAEYR
                     IRREDAGSKALVISCTKMKDAEELKEAAYDLRVVELFTDADGELITSLVVVDDPRPPV
                     ELERIEEAGNKTENHTALWGCIRSRTQNGDKCTIPLLRDDMKKLGYEMKNFRRWLYKL
                     EKDGVISIDGDDVAPL"
     gene            3779..4030
                     /locus_tag="OQQ19_003589"
     CDS             3779..4030
                     /locus_tag="OQQ19_003589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000192401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805068.1"
                     /translation="MTQKRRDRTEPKYKALDMTEHTLKVAIRTIDRHTREGYAKEHPD
                     LISAFMTTAAANFATLTEREIAEAEQVTTINVKTGEVEL"
     gene            4027..4437
                     /locus_tag="OQQ19_003590"
     CDS             4027..4437
                     /locus_tag="OQQ19_003590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HCS1805069.1"
                     /translation="MTAQIAAYGRLVDDPQVKQTSKGTPMTLARMAVSLPCSQAQDGQ
                     ATLWLSVIAFGKQADFLAKHQKGDVASVSGTMQVSQWTGQNGETRQGWQVIADSVISA
                     RAARPGGNRRKTTGTQGNQPPAGGDDPYGDDISF"
     gene            4448..4720
                     /locus_tag="OQQ19_003591"
     CDS             4448..4720
                     /locus_tag="OQQ19_003591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PerC family transcriptional regulator"
                     /protein_id="HCS1805070.1"
                     /translation="MVHDRIAEELEAKGFYRRAAARWGEVMQLVETDKERHHITMRRL
                     ECSRKAQRAPEPPDNFGDLKKAVDRTYAEMGIDGAGDEIWRNYQDS"
     gene            4846..5070
                     /locus_tag="OQQ19_003592"
     CDS             4846..5070
                     /locus_tag="OQQ19_003592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309616.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805071.1"
                     /translation="MPMKFDEILKQRDKYHADNMETMSINDYRAFLETGALIEKDQHG
                     FVRCALSGEMLAVNPEQIDALIEFLKEIRD"
     gene            5322..5528
                     /locus_tag="OQQ19_003593"
     CDS             5322..5528
                     /locus_tag="OQQ19_003593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000796968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805072.1"
                     /translation="MAEEKKGGVSVYISPEIVEVLKQRHKKNYEAGVAAGLDPLMTPE
                     PSIGSLVRSYLLAALGMHKNYGGE"
     gene            5528..6583
                     /locus_tag="OQQ19_003594"
     CDS             5528..6583
                     /locus_tag="OQQ19_003594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HCS1805073.1"
                     /translation="MAGKATALNTNQLFMYLNRGDIADFKFSPLFTTLFFPNVATFST
                     QNIMLDTLDIEEVTMSAFCSPMVGSQVQRDKGYETSTIKPGYMKPKHEIDPTKTIMRM
                     AGEDPAQLNDPTYRRMRLITGNMRRQINAIKARVEWLAVNAVTTGKNIIEGEGIERYE
                     IDWKIPEKNIIEQSDGKKWSEHDKDIYDPIYDIELYADQAGCPANVMIMGAEVWRTLR
                     SFKKFRELYDLSRGSESAAEMACKNLGEVVSFKGYLGDIALIVYSGKYTDSDGTEKYF
                     LEPDLLVLGNTNNKGLVAYGAIMDQEAVRTGATQNMYYPKNWIEDGDPAIEYVQTHSA
                     PQPVPADIRKFVTVKIG"
     gene            6620..6898
                     /locus_tag="OQQ19_003595"
     CDS             6620..6898
                     /locus_tag="OQQ19_003595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004977729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head decoration protein"
                     /protein_id="HCS1805074.1"
                     /translation="MQAVSRYQRHWYILPLMLVDNGEFKPWDGQESGKAVYLTSYLVD
                     TSKQKSAQCYKTGIFNIAAVNWPESVDTDAKKCAAFAGSGVSVQPLAR"
     gene            6911..7324
                     /locus_tag="OQQ19_003596"
     CDS             6911..7324
                     /locus_tag="OQQ19_003596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head-tail connector protein"
                     /protein_id="HCS1805075.1"
                     /translation="MATNESIMALPLASKFKAEARAMADRGLSTYEAVYQLNKLEEQD
                     KPRADAIMALHEHKDYQPLLRAMANVPCIDVDTAKNILNMTIEQERPKVAPELTAAFE
                     NFMDMHSPQTVSAGMAYDGRNPGDDGDIDRILKTI"
     gene            7486..>7749
                     /locus_tag="OQQ19_003597"
     CDS             7486..>7749
                     /locus_tag="OQQ19_003597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805076.1"
                     /translation="MIDKACFVSQQEIAEHFKVNRTTIRAWTKQGMPYLNADRGKSGG
                     YHIGHTLLWSSGKSRLEAIRYHVETSALEKIMFARLLSSERDEY"
BASE COUNT         2165 a         1771 c         2096 g         1717 t
ORIGIN      
        1 ggtgtatacc gtttaaaaac ggtgggaact gtttttaccc atatccgatg atttaccgta
       61 tttgtcaccg gaatacaccg gattcacaag gtaaatcacg atggaagcaa tcagaaaaat
      121 tatctttcgc caggaagtaa aaaaaattat ccacatcaag gcagacagca cgctgcaaag
      181 catgatcaac gccggagaat ttccgcaggg ttttcgcgtt ggtttacgcc gtcgcggatg
      241 gtatgaggat gatgtgttgg cctggcagaa agaacgcgaa caggaagcac gcggaacggc
      301 tgcttaacgg gtatcacaga tatgacaaac acgaaaaaag cggccccgat atggagccgc
      361 ctttctgaac aattaacccg ctgcgcctta tgtgtatatg atcccaaaca taagcacggg
      421 gatgatagcc gctatcaggc tggtgggcaa tgcaatcagt ctggttcagt tcgttgccat
      481 acctgcaatg agcgcttttc cctatactct ttaaggaatt gctcaagggc aaaagcacat
      541 ggtgcgaatc tttctgattc atgctctatc tttctgcgcc gtcttttccg tgccggtgat
      601 aatgttttgg tcaattcttt atcggtcatt gtgttgtcct gcatagcaat gcgccgtaat
      661 acctcacacc acggcgctga tagtttttat cctttgggtt ctatgccgcg ccgctttagt
      721 tcagtgcgcc ccaactcttt aagccagttg gctaggctta tgccgtcgct ctgtgcttct
      781 ttgtcgaatt gctcttttag ctctggagaa attcgcattc tgaattgtgg ggattgcccg
      841 tcccctttag ggcttttatc gcgtttgatt attgacaagt ggtcacctat tgaattagcc
      901 tttccattgt taggtggcca ccttaacaca agagcactta aaaaagcaaa gccccgcaag
      961 tgtcattacc actcgcaggg cttctaacca acaacgtaaa ctaggagccg ttatggttgc
     1021 cgtaaatcat ataccacacc ttgtacacac acaaacggcc tttgtgtggc gttttctggc
     1081 cctgagtgcc ggagaatctc aaatcatcca cgtaaccgcc tggacggaac gcgaagcgcg
     1141 tagccgttgc ccgtccggtt gtgttgctgt attcgccgcc cgtattcgtc agggggaaac
     1201 ctatgcacaa taaaaccaca ccgaacgcag cagccgccgc actcactacg ctgatgcacg
     1261 cgcttattga tattgaatgc actgcagagc ttgcgcaggg agaagaacag aaagaccgga
     1321 cacagttcgc cctggaatgt atccgataca tcgcaacgcg gtcgctgaat gacgctaaaa
     1381 atattcttgt tgctgattgt gaaaatgggg ggggttatgc gtgatgatcg ttttaattcc
     1441 ctgaaacagg aatttcccgg cgttcctgat gatgcggctg atgcgctttc gtcaatgcca
     1501 gaacttatta gagcggcttt tttcttactt tccacgagag aatataaatc aacggggctt
     1561 gatgtactga atatcgccgc cgattatgcg gaatatgtgg cagaggcgcg ttacagaaga
     1621 aaatttcctg aggatgtaag ccatgcgtga tatttaccac gaaacaatag accgcgcatt
     1681 tcttgcactt tctcacagtg aaaacatgct ggaaatattg cgcatatggc ttgaaacact
     1741 tggcgacaat gaacgcgaca aacaaaaatc aagaattgcc acggcattaa taacgcttct
     1801 tgagcctgta ataatggaac tgcaagaaat agatctattg cacgacagat ataaagaaca
     1861 gcacaccgga gaataaaaat aatgaaactt aaatattctg gcttaactgc cagtggcaac
     1921 actcacccta aatttacgcg cggtgatatt taccgcgacc agtacggcgg cacggtaatg
     1981 attaagggcg tggaagaacg gcgtgtaacc taccgccgtg aaggttacga atatgattgc
     2041 gtgatgcctg tttatcagtt ccggcgtgat ttttctctgg tacagaccgc gccgcataac
     2101 gtgcccacca gcaacgccag ggcacgggca aacatccaga agctgaaaac catgattaac
     2161 ggattcaggg gcaagaaatg aaaagcgcac cgaacttaaa aaaacagcct tacgacaaga
     2221 tgaccgaagt cattattttt gcgggtagtg atgcctgggc acatgcaaaa cagtggcagg
     2281 aacaggacgg gcgactggct ggcgataatg tgcctcccgt tgtgctggct gatgatcaac
     2341 tggatgaact ggcagacctg agaatcatcg acgaggggcg ctattgtgtc cggctgtaca
     2401 aggcaggcca catcaggcca tcaaatatta atgccattgc gcacaagctg gcggcggcgg
     2461 gtgtaactga tgcgaattat taccccgaag ggatgcacag ccatatgcgg gagaactggc
     2521 gcgaatacct ggaacgggtg cgcgggaaag agccggtgga agaaaaaaac caccagcgaa
     2581 aaaccacgct accgatgagc gttggatcta ccggatacga cacgcaactg gattacgtgg
     2641 ttaaggggat tattccggcg gtatcgctat gcagcatata cggggctagc gggtcctata
     2701 aatcattcct tgccggatcg tgggcgtgcc atgttgccac tggtcgccag tggggaggcc
     2761 gcagggttgc acatggtgcg gttctctatg tggttggtga aggcggtatc ggcgttccgc
     2821 gtcgtgtaaa agcctgggag gttgtgcacg atgagcaggt gaaaaatctg tatctggtaa
     2881 accgccccat ctttccggct gccccgcttg atgttgatga aatggttatc gctgcccgtc
     2941 aggtggagcg ggaaacgggt aaacctgtac gcatgattat tctggatacg ctggcgcgtt
     3001 gctttggtgg gaatgatgaa aatgattccc gtgatatggg ggcgtttatc cgtggttgtg
     3061 acgaactgaa acgacgcaca ggggccacgg tgctggtggt tcaccattcc ggcaaggatg
     3121 agacgaaagg cgcgcgcggt tccagtgcat ttcgtgcttc gctggatgct gaataccgga
     3181 tacgcaggga ggacgcagga agcaaagcgc tggttatctc atgcaccaaa atgaaggacg
     3241 cggaggaact caaagaagcc gcatatgact tacgcgtggt ggagcttttt accgacgctg
     3301 acggtgaatt aatcacgtcg ctggtggtgg tggatgatcc gcgccctcct gttgaactgg
     3361 agcgcatcga ggaggcaggg aacaagacgg aaaaccatac cgcgctatgg gggtgcatcc
     3421 gttcacgcac acagaacggc gacaagtgca cgatcccgct gttacgtgat gacatgaaaa
     3481 agctggggta tgaaatgaaa aacttccggc gctggctgta caagctggaa aaagatgggg
     3541 ttattagtat cgatggggat gatgtagcgc cgctataaaa gtgaggagca aaagcgaggg
     3601 ggatagaaag agggccaaaa ttagcccgct ctccctcact tttcgacctg tatacatcct
     3661 caaaagtgag gggtaaaaaa atacttataa aacacacaca tagaaaaacc gaaaatccca
     3721 actgcgacga agtgagacgc ttgaaaaagt gaggcgaaaa agtgagaggt tgcgagaaat
     3781 gacccaaaaa cgcagagaca gaacagagcc aaaatataaa gcgttagaca tgactgagca
     3841 caccttaaag gtggcaatca gaacgataga ccgccacacg cgggaaggat acgcgaagga
     3901 acatcccgac ctgataagcg cattcatgac cacggcggcg gcaaactttg ccacgctgac
     3961 agaacgggag attgccgaag cggaacaggt aacaaccatc aacgttaaaa ccggagaggt
     4021 ggaattatga cggcacagat agccgcttac gggcggctgg tggacgaccc gcaggtaaaa
     4081 cagaccagca agggcacacc gatgacgctg gcgcgtatgg cggtatcttt gccatgcagc
     4141 caggcacagg acggacaggc gacgttatgg ttatcggtca tcgcatttgg caaacaggcc
     4201 gacttcctgg ctaaacatca aaaaggcgat gttgccagcg tatccggcac gatgcaggta
     4261 agccagtgga ccggacagaa cggagaaacg cggcagggct ggcaggttat cgcagacagc
     4321 gtaatcagtg cccgcgcggc acgtccaggc gggaacagac gcaaaaccac aggcacacag
     4381 ggtaatcagc caccagcggg aggcgatgac ccttacggtg atgatatttc gttctgaggg
     4441 ggtgacgatg gtacatgacc gcatagcgga ggaactggag gcgaaaggct tttaccggag
     4501 ggcggcggcg cgatggggtg aagtcatgca gctggtggag acagacaagg aacggcatca
     4561 catcacgatg cgacggctgg aatgttcaag gaaggcacag agggcaccgg agccgccgga
     4621 taatttcgga gacctgaaaa aggcagtcga tcgcacttat gccgaaatgg gtatagatgg
     4681 tgctggtgat gaaatatggc gcaattacca ggacagctaa tcaaacagcc ggagaaatcc
     4741 ggcttttttg caccagttga aacggtatgg cgcattaccg ggttttcgtc acggtcaggc
     4801 atagttacta tctgaaacaa acagacacaa cagaggaaaa aaacaatgcc gatgaaattt
     4861 gatgagatat taaaacagcg tgataaatac catgctgaca acatggagac gatgagcatc
     4921 aatgattacc gcgcattcct ggagacgggc gcactgattg aaaaggatca gcatggtttt
     4981 gtgagatgtg ctctatccgg tgaaatgctg gcggtaaatc ctgaacagat agatgcattg
     5041 atagaatttc tgaaagagat cagagactga tccagcacac agcacacata gccggagcaa
     5101 tccggctttt ttgcgcccaa aaaaagcccg ataaggtcag agggttctta tcgggctttt
     5161 gcatatgagg tttttggatg cactggcgtt cgtgatcggg ataatcattt cataatttgc
     5221 aacataactc aatattattg cataaaatgc aattctgatt ataatcagga ctggataaac
     5281 atccagttat gattttttta gtcgaagagg aatttcttac tatggctgaa gagaaaaaag
     5341 gcggtgtttc ggtgtacata agccccgaaa tcgtggaggt gctcaagcag cgccacaaaa
     5401 aaaactatga ggctggcgtg gcggctggac tggatccgct gatgacgccg gagccgtcga
     5461 taggttcact tgtacgctct tatttacttg cggcgcttgg gatgcataaa aattatgggg
     5521 gtgaataatg gcaggcaaag caacggcact taacactaac cagcttttta tgtacctgaa
     5581 tcgcggggat attgcggatt ttaaattcag ccctctgttt accacgctgt ttttcccgaa
     5641 cgtggcgaca ttcagcacgc aaaacatcat gctggatacc ctggacattg aagaagtcac
     5701 catgtcggcg ttttgttcgc ctatggtggg tagccaggtt cagcgcgata aagggtacga
     5761 aaccagcaca atcaaacctg gctacatgaa gccaaagcac gaaatcgatc caacgaaaac
     5821 catcatgcgc atggctggag aagatccggc acagcttaac gaccctacct atcgccgtat
     5881 gcgcctgatt actggcaaca tgcgccgcca gataaacgcc attaaggcac gcgtggaatg
     5941 gctggcggtg aatgcggtaa cgaccggaaa aaacatcatt gagggcgaag gcatagaacg
     6001 ctatgaaatc gactggaaga taccggaaaa aaacatcata gagcagtccg acggcaaaaa
     6061 atggtccgag catgataaag atatttacga tccaatctat gacatcgaac tatacgcaga
     6121 tcaggcaggt tgccccgcca acgtcatgat tatgggcgct gaggtatggc gcacgttacg
     6181 cagctttaaa aaattccgtg aactgtacga tctttcccgt ggttcagaat ccgccgcaga
     6241 aatggcctgt aaaaacctgg gcgaagtggt gagctttaaa ggctatctgg gcgatattgc
     6301 tcttattgtc tattccggca aatacactga cagcgacggc accgaaaaat atttccttga
     6361 gcctgatttg ctggtcctgg gcaacaccaa caataaaggg ctggtggcct atggtgcgat
     6421 tatggatcag gaagcggtaa gaacgggcgc aacgcaaaac atgtactacc cgaaaaactg
     6481 gattgaggac ggcgatccgg cgattgagta cgtgcagaca cacagcgcac cgcagccggt
     6541 tccggcagat attcgcaaat ttgttaccgt caaaattggt taacggggga ttatatggac
     6601 actccatata ttgagttatt tgcaggcagt cagcaggtat caacgacact ggtacatttt
     6661 gccgctgatg ctggtggaca atggcgagtt taagccgtgg gatggtcagg aatctggcaa
     6721 ggctgtttat ctgacttcgt acctcgtgga cacgtcaaag cagaaatcag cacagtgtta
     6781 caagacgggg atattcaata ttgccgccgt taactggcct gagagcgtcg acaccgatgc
     6841 gaaaaaatgc gccgcctttg cgggttctgg cgtatccgtt cagccgctgg cccgataagc
     6901 agggggaacg atggcaacga atgaaagcat catggcgcta ccgctggcga gtaaatttaa
     6961 agccgaagcg cgggcaatgg ctgacagagg tttatcaacc tacgaggccg tatatcaact
     7021 caacaaactg gaagagcagg acaagccgcg cgctgatgcg attatggcgc ttcatgagca
     7081 taaagactat cagccgctgt tgcgtgcaat ggcaaacgtg ccttgtatcg atgttgatac
     7141 ggctaaaaac atcctgaaca tgaccataga gcaggaacgc ccgaaggttg caccagagct
     7201 taccgcagcc tttgaaaact ttatggacat gcacagccca caaaccgtat cagctggcat
     7261 ggcatacgat ggcagaaacc caggcgatga cggcgacatc gatcgcatac tgaaaaccat
     7321 ctgagacaag gccggagaaa tccggctttt ttgcgggtcc ttcctggaat tatggcccgt
     7381 tacggggcgg cgacctcgcg ggttttcgct atttatgacg tttttccgtg aaggtgacac
     7441 caccaccact tgattaatat ttaaccatgc agttaaggta acattatgat tgataaagct
     7501 tgttttgtaa gtcagcagga aatagctgaa catttcaagg ttaacagaac cactattcgc
     7561 gcatggacca aacaggggat gccgtatctt aatgcggatc gcggaaagtc tggcggttat
     7621 cacatcgggc atacattgct ttggtcttca ggtaaaagcc gtcttgaggc catcagatat
     7681 cacgtagaaa ccagtgcgct ggaaaaaatt atgtttgcca ggctgctttc atctgagcgt
     7741 gacgagtac
//
LOCUS       DAJVSY010000174         7703 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.176, whole genome shotgun sequence.
ACCESSION   DAJVSY010000174 DAJVSY010000000
VERSION     DAJVSY010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7703)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7703)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7703
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.176"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            201..839
                     /gene="ytfB"
                     /locus_tag="OQQ19_003598"
     CDS             201..839
                     /gene="ytfB"
                     /locus_tag="OQQ19_003598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein YtfB"
                     /protein_id="HCS1805077.1"
                     /translation="MPGRFELKPTLEKVWHAPDNFRFMDPLPPMHRRGIIIAAIVLVV
                     GFLLPSDDTPNAPVVTREAQLDIQSQSQPPTEEQLRAQLVTPQNDPDQVAPVAPEPIQ
                     EGQPEEQPQTTQTQPFQPDSGIDNQWRSYRVEPGKTMAQLFRDHGLPATDVYAMAQVE
                     GAGKPLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR"
     gene            complement(823..1470)
                     /locus_tag="OQQ19_003599"
     CDS             complement(823..1470)
                     /locus_tag="OQQ19_003599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709992.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HCS1805078.1"
                     /translation="MYLDTSNVQSLKEKLLLCAVNEFAEYGYEGARVDNIVKAAGCSK
                     QTVYHHFGNKENLFIKVLEYTWNDIRQKEKALDFSDLPPQKAIEKIIDFTWDYYIANP
                     WFLKIVHSENQSKGVHYAKSQRLLEINHAHLQLMESLLDEGKKHNIFKPDIDPLQVNI
                     NIAALGGYYLINQHTLGLVYHISMVSPQALEARRKVIKETILSWLLVDPSSTAHE"
     gene            1682..2473
                     /locus_tag="OQQ19_003600"
     CDS             1682..2473
                     /locus_tag="OQQ19_003600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709993.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-ketoacyl-ACP reductase"
                     /protein_id="HCS1805079.1"
                     /translation="MKSTRPVAVITGAARGIGKGCAQELARGGFNLLINDRPDADSVE
                     KLHITQQECLAEGVEVICFPADVGDLSLHEEMLDAAQNQWGRLECLLNNAGISVKKRG
                     DLLDLEPDSFDQNIAINTRAPFFLAQAFSKRLLAQPKPEAELPHRSIIFVSSINAIML
                     AMNRGEYTIAKTAVSAAARLFAARLCNEQIGVYEVRPGLIKTDMTIPATAYYDELIAK
                     GLVPWGRWGYPADIASTVRAMAEGKLIYTCGQAVAIDGGLSMPRF"
     gene            2483..3325
                     /locus_tag="OQQ19_003601"
     CDS             2483..3325
                     /locus_tag="OQQ19_003601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001205218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HCS1805080.1"
                     /translation="MRDLLQRPDLFSINTATLGYKTPLPAIIDACAARGIGAIAPWRR
                     ELQGEDLQQITRQLAASNMSVSGLCRSTYYTAPTLAERKLAIDDNRRALDDAAVLNAA
                     CYMQVVGGLPTGTKDLYEAREQVKQGIRQLLPHSKDVGVPIALEPLHPMTAADRSCLC
                     TLRQALDWCDELDPDGEFGLGVAVDVYHVWWDPDLASQILRAGKRILAFHVSDWLVPT
                     TDLVNDRGMPGDGVINIPSIRRLVENAGFNGAIELEIFSPYWWQKDINSTLDISVDRI
                     AHYC"
     gene            3335..4111
                     /locus_tag="OQQ19_003602"
     CDS             3335..4111
                     /locus_tag="OQQ19_003602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001283531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HCS1805081.1"
                     /translation="MSDQPVLFSRVAASCRLTLNREDKCHAINEEMIESLDHYLNEIE
                     NDTTLRLVELTATGDKFFCAGGDIKSWSAYSPLDMGRKWIKRGNDVFNRLRNIPQLTV
                     ANLNGHTIGGGIELALCCDIRIARPGAKFSNPEVMLGMVPGWMGIERVLNQVGPVVGR
                     QMLMLGKRLTAQEAQAANLIDEVVEKEQVESWMANQLAQLEKCGPVALAHIKQLILAL
                     ENKHADYPHQLLAGLMSATQDCQQATRAFAEKSSVSFHNQ"
     gene            4121..5662
                     /locus_tag="OQQ19_003603"
     CDS             4121..5662
                     /locus_tag="OQQ19_003603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001226973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HCS1805082.1"
                     /translation="MRKITTAEALAAQIQDGATIAISGNGGGMVEADHILAAIEARFL
                     QTGHPRDLTLIHSLGIGDRDCKGTNRFAHAEMLKRIIAGHFTWSPKMQALVKNNTIEA
                     YCFPGGVIQALLREIGSGRPGLFTHVGLGSFVDPRNGGGKSNECTTDDLVELIEIDGK
                     TKLRYRPFKVDYAILRGTYADPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDV
                     LEAGAIEPRRVKLPGILVDGIVEHRKQPQTYLGGYDLTISGQHRRLSSNDAIELVSHP
                     VRRLIARRAARELVAGASTNFGFGIPGGVPGVALREGVPYQSLWLSVEQGVHNGMMLD
                     DAFFGCARNADAIIPSLDQFEFYSGGGIDITFLGMGEMDQYGNVNVSHLNGNLIGPGG
                     FLEIAQNARKVVFCGTFDAKGSKIDITPDGLHIAQSGQIPKLVTKVEKITFSAAYAQQ
                     SGQEVLYITERAVFQLTAEGVELIEIAPGVEIERDILPYMAFRPIIKHPRLMESSLFT
                     PMEDA"
     gene            5659..7703
                     /locus_tag="OQQ19_003604"
                     /pseudo
     CDS             5659..7703
                     /locus_tag="OQQ19_003604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001591423.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
BASE COUNT         1917 a         1921 c         2032 g         1833 t
ORIGIN      
        1 ttcagtagcg gagcaggaag gacatctgat ggaaatggaa gccacgcaag caccttaaaa
       61 tcaccatcat acactaaatc agtaagttgg cagcattacc cccgtatgaa tataataaag
      121 gcgggtttac cacggacatc atagcgttag cttattcata ggctatgatt gaggaacaag
      181 acgcggagca ggaggaaacc atgcccgggc gctttgaact aaaaccaacc ctggagaaag
      241 tctggcacgc gccggacaat tttcgcttca tggacccgct gccgccgatg catcgtcggg
      301 ggatcattat tgccgccatt gtattggtgg tcggatttct gcttccatct gatgatacgc
      361 ccaacgcgcc ggtggtgacg cgtgaagcgc agttagatat tcagtcgcaa tcacaaccgc
      421 cgacagaaga acagctgcgg gcgcaattag tcacaccaca aaatgatcct gatcaggtgg
      481 ctccggtcgc tccagaacct atacaggaag gccagccaga agagcagccg caaactaccc
      541 aaacgcaacc attccagcca gatagcggaa ttgataatca atggcgctct taccgtgtcg
      601 aacccggtaa aacgatggcg cagctgttcc gcgaccacgg actgcccgct accgatgtct
      661 atgcaatggc gcaggtagaa ggcgcgggta agccgctgag taatttgcaa aacgggcaga
      721 tggtgaaaat tcgccagaac gccagcggcg tggtgacggg cttaaccatt gatacgggga
      781 ataatcaaca ggtcctgttc acccgccagc cggatggcag ttttattcgt gcgcggtaga
      841 tgaagggtca accaaaagcc agctaaggat tgtctctttg atgaccttac gtctggcttc
      901 cagtgcctgg ggggaaacca tactgatatg ataaaccagg ccaagcgtat gctggttgat
      961 caaataatat ccgccaagcg cagcaatatt aatattcacc tgcaatgggt cgatatctgg
     1021 cttaaaaata ttgtgtttct tcccttcatc caataaggat tccattaact gcaagtgcgc
     1081 atggttaatt tctaagagac gctgtgattt tgcataatgc acacctttac tttgattttc
     1141 actatgcaca atttttaaaa accaggggtt agcaatataa taatcccatg taaaatcaat
     1201 aattttctca atagcttttt gtggcggaag atctgagaaa tcaagggcct tttctttttg
     1261 tcgaatatcg ttccaggtat attccagtac tttaataaat aaattttctt tattaccaaa
     1321 gtgatgataa accgtctgtt tactacaccc cgcagcctta acaatattat cgaccctggc
     1381 cccttcataa ccatattcgg caaattcatt aaccgcgcat aacagcagct tttccttcag
     1441 gctctgtacg ttgctggtat caagatacat aacgcttccc cacgacctct tcgtggtgac
     1501 tatcataacc tgatttgatt tcagcttcag aaaaaagggc aaaaacttgt actttcatca
     1561 ggttatcaaa tgtcctgtga tcgtcatcgc atatcaacca actagatggt tgaccttttt
     1621 atcctccagt cgcaagctaa tcatcaccaa ggaaacaaaa ttcaaaaaag agagctattg
     1681 tatgaaatcc actcgtcctg ttgccgtgat taccggagcc gctcgcggta ttggaaaggg
     1741 ctgtgcgcag gagcttgctc gtggcgggtt taacctgctg attaacgatc gtcccgatgc
     1801 cgacagcgta gaaaaactgc atatcacaca acaagaatgt ttggcggaag gcgtggaagt
     1861 gatttgcttc cctgctgatg tcggtgatct atctctgcat gaggagatgc tcgacgcggc
     1921 gcaaaaccag tgggggcggc tggagtgtct gctcaataac gcggggattt cagtgaaaaa
     1981 acgcggtgac ctcctcgacc tcgaaccaga cagcttcgat caaaacattg ccattaacac
     2041 ccgcgcgccg ttcttccttg ctcaggcatt cagtaagcgc ttactggcac agccgaaacc
     2101 ggaagcggag ctgccgcacc gctcgattat tttcgtcagt tccatcaacg ccatcatgct
     2161 ggcgatgaat cgcggcgaat acaccattgc caaaaccgcc gtttctgccg ctgctcgtct
     2221 gtttgctgct cgcctttgta atgaacaaat tggcgtttat gaagtgcgcc ctggtctcat
     2281 caaaactgat atgactattc cggcaacggc ttattacgac gaactgattg ccaaaggtct
     2341 ggtgccgtgg ggacgttggg gttatccggc tgatattgct tccaccgtcc gcgcgatggc
     2401 ggaaggtaaa ctgatttaca cctgtggtca ggcggtcgcc atcgacggcg gcttaagtat
     2461 gccgcgcttc tgaggctgaa tcatgagaga tctgttacaa cgcccggatt tattcagtat
     2521 caataccgcg acactgggct ataaaacgcc gctacccgcc attattgatg cctgcgccgc
     2581 acgcggtatt ggcgcaattg ccccctggcg cagggagttg cagggtgaag atctccagca
     2641 aatcacccgc cagcttgccg ccagtaacat gagcgtttcc ggtttgtgcc gtagcactta
     2701 ctacaccgcg ccgacactgg cggaacgcaa actggcgatt gatgataacc gccgggcgct
     2761 ggacgacgca gcggtgctta acgccgcctg ttatatgcag gtggttggcg gtctgccaac
     2821 gggcactaaa gatctatatg aagcgcgaga acaagtgaaa caagggattc gccagttgct
     2881 gccacattcg aaagatgtcg gcgtgccaat tgcgctggag ccactgcacc cgatgacagc
     2941 tgccgatcgc tcttgcctgt gcacgttacg tcaggcgctg gactggtgtg atgaactcga
     3001 tcccgatggt gagtttggcc tcggcgtggc ggtggatgtt tatcacgtct ggtgggatcc
     3061 ggatctcgcc agtcagatcc tgcgtgccgg aaaacgcatc ctcgcgtttc atgtttccga
     3121 ctggttagtg ccgaccactg atctggtcaa tgaccgtggt atgccgggag atggcgtcat
     3181 caatattccg tcaattcgtc ggctggttga aaacgccgga tttaatggtg ctattgaact
     3241 ggaaatattc tcgccttact ggtggcagaa agatattaac agcacgctgg atattagcgt
     3301 cgatcgcatc gcgcattatt gttaaggaat gatcatgagt gaccaacccg ttctgttcag
     3361 cagagtggcg gcttcctgcc gcctgacatt gaaccgtgaa gataaatgtc atgctattaa
     3421 cgaagagatg atcgaatctc tcgaccatta tttaaatgaa attgaaaacg acaccacatt
     3481 acgattagtc gaattaacgg caaccggcga taaattcttt tgtgcgggcg gcgatattaa
     3541 atcgtggtcg gcctattcgc cattagatat gggcagaaaa tggattaaac gcggtaatga
     3601 cgtttttaat cgcctgcgaa acatacccca attaaccgtt gcgaatctca acggtcatac
     3661 catcggcggt ggtattgaac tggccttgtg ctgcgatatt cgtattgccc gccccggcgc
     3721 gaaattctct aacccggaag tgatgctcgg catggtgcct ggctggatgg gcattgaacg
     3781 tgtgcttaat caggtcggtc cggtggtcgg tcgccagatg ctgatgctgg gtaaacgcct
     3841 gacggcgcag gaagctcagg cggcgaattt aattgatgaa gtggtagaaa aagaacaggt
     3901 ggaaagctgg atggcgaacc agttagcgca gctggaaaaa tgcggtccgg tggcactggc
     3961 gcatattaag caactgattc tggcactgga aaataaacat gccgattacc cgcaccagct
     4021 actggccgga ttaatgtccg ccactcagga ttgccagcag gcgacgcgcg cctttgccga
     4081 aaaaagtagc gtgagcttcc ataatcaata aggaaattgt atgcgtaaga taacaaccgc
     4141 cgaggcactg gcggcgcaaa ttcaggacgg tgcgactatt gctattagcg gtaacggcgg
     4201 cggtatggta gaagccgacc atattctggc tgctattgaa gcgcgtttcc tgcaaaccgg
     4261 acaccctcgc gacctgacgc taatccactc gctgggtatt ggcgatcgcg actgcaaagg
     4321 cactaaccgt tttgcgcacg cagagatgct caaacgcatt attgccgggc actttacctg
     4381 gtcgcccaaa atgcaggcgc tggtaaaaaa taacacgatt gaagcctact gctttcctgg
     4441 tggcgtgatt caggcactgc tacgggagat cggctccgga cgtccggggc tttttaccca
     4501 cgttgggctg ggatcgtttg ttgatccacg caatggcggc ggtaagtcga atgaatgcac
     4561 taccgacgac ctggtagaac tgattgaaat cgacggtaaa accaaacttc gttatcgccc
     4621 tttcaaagtg gattacgcga ttttgcgtgg cacttatgcc gatcctcgag gcaacgtcag
     4681 ccttgaagaa gaagcgattg atatggatag ctattccatg gcgctggcag cacacaacag
     4741 cggcggcaaa gtgttcgtac aggtacgcga tgtgctggaa gctggcgcga ttgaaccacg
     4801 ccgagtcaaa ttaccgggca ttctagttga tggcatcgtt gaacaccgca aacagccaca
     4861 aacctatctt ggcggttacg acctgaccat cagcggccaa catcgccgtc tgagttctaa
     4921 cgacgctatt gaactggtta gtcatccggt acgtcgcctg attgcccgtc gggcagcacg
     4981 cgaactggta gctggcgctt caaccaactt tggctttggt attcccggcg gcgttccagg
     5041 agtagcgctg cgcgaaggcg ttccttacca aagtttatgg ctgagcgtcg agcaaggcgt
     5101 acataacggc atgatgctgg atgatgcgtt tttcggctgc gcccgcaacg ccgatgccat
     5161 tattccatca ctcgatcaat ttgagttcta cagtggcgga gggatcgata tcaccttcct
     5221 cggcatggga gagatggatc agtacggtaa cgtcaacgtc tcccatctca atggcaatct
     5281 gattggcccc ggcggatttc tcgaaattgc gcaaaatgcc cgtaaagtgg tgttctgcgg
     5341 cacgttcgac gctaaaggca gcaagatcga tataacacca gatggcttgc atatcgccca
     5401 gtcaggtcaa atccctaaac tggttaccaa ggtggaaaaa atcactttta gcgccgccta
     5461 cgcacagcaa agtggtcagg aagtgttgta tatcactgaa cgcgcagtat tccagttaac
     5521 ggcagaaggc gttgaattaa ttgaaatcgc gccgggtgtg gagattgagc gcgacattct
     5581 gccgtatatg gctttccgtc caattatcaa gcacccacgc ctgatggaaa gtagcctgtt
     5641 tacgccgatg gaggatgcat gagtcagctt gatgacacca tccttgatgc gctgacgcac
     5701 gttactttcc caaagggttt tgcacaggca gagcccgcat gggttgtcac ggtagacggt
     5761 gttaattacc cactctggca aacagatgcc ctggtagtcg gcagtggtgc agcaagatta
     5821 cgtgcggcag ttgaacttaa acgccgccag caaaatgtgc tgatcgctac cgccgggtta
     5881 tatatgggga cgtcggcatg ttctggttcc gataaacaga cactatttac cgccgctacc
     5941 gcgggcaacg gcgacaactt caccaaactg gcagaggcac tggcgagcgg tggggcgatg
     6001 gatcacgaca ccgcttatgt cgaagcggta ggttctctgc acactctagg cgggttgcaa
     6061 tatcttggtc tggaattacc ggaagatcgc tatggcgcga ttcttcgtta tcaaaccgac
     6121 catgacgaag ccgggcgtgc aacctcgtgt gggccgcgta cctcaaggtt aatggtgaaa
     6181 gtgctgttgg aagaagtaca gcgcctcgcc attccagtgt tgaccagtgc aacagtgatt
     6241 aaactgctgc atcagcgtga cgaaaacggc gaagaccgcg tggcaggggc aatcctcgcg
     6301 accggtcatc gcgcccataa cccatggggg ctggcaattg tgactgcgcc caatgtggta
     6361 ctggcaacgg gcggaccggg cgagctttat cgcgacagtg tttatccaca taaatgcttc
     6421 ggctcgctgg ggctggcgct ggaggaaggt ctgacgctaa ccaatctgac cgaaagccag
     6481 tttggtatag gcacgccgcg tagcacgttt ccgtggaatt tatccggcac ctatgtacag
     6541 gtgatcccgt atatctattc cgtggatgct gagggtaacg agtataactt cctcgcgatt
     6601 actatcgcac cacccaggag ctggcttcaa acattttccg taaaggctat cagtggccgt
     6661 tccacgccac tcgggtgatg gattttggct ccagcttgtt agatatggca gtagcgcaag
     6721 agcagcaatc agggcgtcag gtatttatgg atttcaatcg caatcctgaa gcggtgccgg
     6781 gtgacctgcc gttctcatta gatcgactgg acgacgacgt tcgcgcgtat ctggaaaata
     6841 acgacgctct ggcaccatcg cccatcgaac ggctgcaacg aatgaatccg ctgtctatct
     6901 cgctgtataa gatgcacggt tacgatctca ccacacagcc tttgcagttt gccatgaata
     6961 atcagcatat gaatggcggc attgaagtgg atatctgggg acaaacctcc ctgcccggct
     7021 gtttcgccgt gggggaagtt gctggcacac acggcgtcac tcgccctagt ggtgcagcat
     7081 tgaatgccgg gcaggttttt gctgttcgtc tggcacgttt tattggttgc acgcaaaagc
     7141 ggtctgttga gggtgatgtc gcgcagctgg tagcctcatc tctgaatata gtcagagaag
     7201 ttatcgctca ggcactggca aacgagaacg gaatggcgct ggtaacggtg aaagacaaaa
     7261 tccaggcgcg aatgtctgat tacgccggat ttatttgtca tgccgataaa gttcgtcatg
     7321 ccacccgtga cgccctgctg ctaagtgagt ttgtacaaca acacggttta accatcaatc
     7381 acgcaggcga aattgccgaa ctgtttatgt ggcggcatat gacgctgact tctgccgccg
     7441 tattaacgca attgacgcat tatattgacg caggtggtgg cagtcgtgga gcacggatgg
     7501 ttattgatcc acaaggcaaa tgcctcccac aaactcgtcg cggcgcaaaa gaagaatggc
     7561 gttttcgctc tgaacgtgct gaagacaaaa atcacagatt aacgattcaa tattcgcaag
     7621 gttcttttat taccgaagtg aagtctttac gtatgcaacc gtgtattaaa ggtatttact
     7681 ttgaaaaaaa ctggccagac ttt
//
LOCUS       DAJVSY010000175         7660 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.177, whole genome shotgun sequence.
ACCESSION   DAJVSY010000175 DAJVSY010000000
VERSION     DAJVSY010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7660
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.177"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            380..988
                     /locus_tag="OQQ19_003605"
     CDS             380..988
                     /locus_tag="OQQ19_003605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HCS1805083.1"
                     /translation="MKLVGSYTSPFVRKLSILLLEKGITFEFINELPYNADNGVAQFN
                     PLGKVPVLVTEEGECWFDSPIIAEYIELMNVAPAMLPRDPLESLRVRKIEALADGIMD
                     AGLVSVREQARPAAQQSEDELLRQREKINRSLDVLEGYLVDGTLKTDTVNLATIAIAC
                     AVGYLNFRRVAPGWCVDRPHLVKLVENLFSRESFARTEPPKA"
     gene            1086..2477
                     /gene="selA"
                     /locus_tag="OQQ19_003606"
     CDS             1086..2477
                     /gene="selA"
                     /locus_tag="OQQ19_003606"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HCS1805084.1"
                     /translation="MTTETRSLYSQLPAIDRLLHDSSFLSLRDTYGHTRVVELLRQML
                     DEAREVIRDSQTLPAWCENWAQEVDARLTKEAQSALRPVINLTGTVLHTNLGRALQAE
                     AAVEAVAQAMRSPVTLEYDLDDAGRGHRDRALAQLLCRITGAEDACIVNNNAAAVLLM
                     LAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHANDYRQAVNEN
                     TALLMKVHTSNYSIQGFTKAIDEAELVALGKELDVPVVTDLGSGSLVDLSQYGLPKEP
                     MPQELIAAGVSLVSFSGDKLLGGPQAGIIVGKKEMIARLQSHPLKRALRADKMTLAAL
                     EATLRLYLHPEALSEKLPTLRLLTRSAEVIQIQAQRLQAPLAAHYGAEFAVQVMPCLS
                     QIGSGSLPVDRLPSAALTFTPHDGRGSHLESLAARWRELPVPVIGRIYDGRLWLDLRC
                     LEDEQRFLEMLLK"
     gene            2474..4318
                     /gene="selB"
                     /locus_tag="OQQ19_003607"
     CDS             2474..4318
                     /gene="selB"
                     /locus_tag="OQQ19_003607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HCS1805085.1"
                     /translation="MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAY
                     WPQPDGRVPSFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLT
                     GNPMLTVALTKADRVDEARVDEVERQVKEVLREYGFAEAKLFITAATEGRGIDALREH
                     LLQLPGREHASQHSFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDSLWLTGVNKPMRV
                     RALHAQNQPTETAHAGQRIALNIAGDAEKEQINRGDWLLADAPPEPFTRVIVELQTHT
                     PLTQWQPLHIHHAASHVTGRVSLLEDNLAELVFDTPLWLADNDRLVLRDISARNTLAG
                     ARVVMLNPPRRGKRKPEYLQWLASLARAQNDSEALAVHLQRGAVNLPDFAWARQLNGE
                     GMRELLQQPGYIQAGYSLLNAPVAARWQRKILDTLATYHEQHRDEPGPGRERLRRMAL
                     PMEDEALVLLLIEKMRESGDILSHHGWLHLPDHKAGFSEEQQAIWQKAEPLFSDEPWW
                     VRDLAKETGTDEQAMRLTLSQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGS
                     TCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDHLLRDALLFPEK"
     gene            4508..5659
                     /gene="yiaY"
                     /locus_tag="OQQ19_003608"
     CDS             4508..5659
                     /gene="yiaY"
                     /locus_tag="OQQ19_003608"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine dehydrogenase"
                     /protein_id="HCS1805086.1"
                     /translation="MASSTFFIPSVNVIGADSLTDAMNMMADYGFTRTLIVTDSMLTK
                     LGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHD
                     CAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCIITDEARHIK
                     MAIVDKHVTPLLSVNDSSLMIGMPKSLTAATGMDALTHAIEAYVSIAATPITDACALK
                     AVTMIAENLPLAVEDGSNAKAREAMAYAQFLAGMAFNNASLGYVHAMAYQLGGFYNLP
                     HGVCNAVLLPHVQVFNSKVAAARLRDCAAAMGVNVTGKNDAEGAEACINAIRELAKKV
                     DIPAGLRDLNVKEEDFAVLATNALKDACGFTNPIQATHEEIVAIYRAAM"
     gene            5824..7362
                     /gene="aldB"
                     /locus_tag="OQQ19_003609"
     CDS             5824..7362
                     /gene="aldB"
                     /locus_tag="OQQ19_003609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001551836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase AldB"
                     /protein_id="HCS1805087.1"
                     /translation="MTNNPPSAQIKPGEYGFPLKLKARYDNFIGGEWVAPADGEYYQN
                     LTPVTGQLLCEVASSGKRDIDLALDAAHKVKDKWAHTSVQDRAAILFKIADRMEQNLE
                     LLATAETWDNGKPIRETSAADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEP
                     LGVVGQIIPWNFPLLMASWKMAPALAAGNCVVLKPARLTPLSVLLLMEIVGDLLPPGV
                     VNVVNGAGGEIGEYLATSKRIAKVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNI
                     FFADVMDEEDAFFDKALEGFALFAFNQGEVCTCPSRALVQESIYERFMERAIRRVESI
                     RSGNPLDSVTQMGAQVSHGQLETILNYIDIGKKEGADVLTGGRRKLLEGELKDGYYLE
                     PTILFGQNNMRVFQEEIFGPVLAVTTFKTMEEALELANDTQYGLGAGVWSRNGNLAYK
                     MGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLEHYQQTKCLLVSYSDKP
                     LGLF"
BASE COUNT         1813 a         1917 c         2138 g         1792 t
ORIGIN      
        1 ggattgaccg gatggccgga cgtcactccg ccggggcaca ccgaacaggc cacgccggtg
       61 ggggtaccaa tgcgcacccc ggctgaaccc tgaacaatgc taccgccata ctgcgtcatg
      121 tcgccctgac gcgctgccgg ttttccgctc atttctcatc cttgttttat cgggttattt
      181 gtctgctgac aggcaaaacc ctacagattt ataagaaagc ctgaagtgag atatccatca
      241 gagtgaaata attaggaaaa tatttatatc accatgataa atatgtgatt tatttggaag
      301 taacaaacca tcaacatttt ctgccctttt tcccatcacc aggccatact gatatttttc
      361 ctcgcacaaa ggactcggca tgaaactcgt cggtagctac accagcccgt ttgtacgcaa
      421 actttctatt ctgttgttag aaaagggcat aactttcgaa tttattaatg aactgcccta
      481 taacgcggac aacggcgtgg cgcaatttaa cccgttagga aaagtgccgg tgctggtgac
      541 cgaagagggc gaatgctggt ttgattcgcc gatcatcgct gaatatattg agttaatgaa
      601 tgtcgctccg gcgatgttgc cgcgcgatcc gctggagtcg ttgcgggtgc gcaaaattga
      661 ggcgctggcg gatggcatta tggatgccgg gctggtatcg gtgcgtgaac aggcgcgtcc
      721 ggcggcgcag cagtctgaag atgaattgtt acgccagcgg gagaaaatca accgcagtct
      781 ggatgtgctg gaaggatatc tggtcgatgg cacactcaaa accgatacgg tcaatctggc
      841 gactatcgcc attgcctgtg ctgtcggata tctcaatttc cgccgcgttg cgccaggttg
      901 gtgtgtcgac cgcccacact tagtcaaact ggtcgaaaac ctgtttagcc gcgaaagttt
      961 tgctcgcacc gaaccgccaa aggcttgatg cgcgatatgt cctcctgacc catctcacgt
     1021 tacaatccgt ggttatgtta aacgcccttc tccatgtgag agggccttga ttagctaggt
     1081 ttcctatgac aaccgaaacg cgttccctct atagtcaact tccggctatt gatcgcttat
     1141 tgcacgatag ctccttcctt tctttgcgtg atacttatgg tcacacccgc gtggtggaat
     1201 tgttgcgtca gatgctcgac gaagcgcgag aagtgattcg tgacagccag acgcttcctg
     1261 cgtggtgtga aaactgggcg caagaagtcg atgcccggtt gacgaaagag gcgcagagcg
     1321 cgctgcgtcc ggtgatcaac ctgacgggaa ccgtgctgca taccaacctt ggacgagctt
     1381 tacaggcgga agccgcggtg gaagccgttg cgcaggctat gcgttcgcca gtgaccctcg
     1441 agtacgatct ggacgacgct ggacgcggac atcgcgatcg ggcgctggcg caactgctgt
     1501 gccgtattac gggggcggaa gatgcctgta tcgtcaataa caatgcggcg gcggtgttat
     1561 tgatgttggc ggccactgcc agcgggaaag aggtggtagt atctcgcggc gaattggtgg
     1621 agattggcgg cgcgtttcgt attcccgatg ttatgcgtca ggcaggctgc accctacacg
     1681 aagtagggac caccaaccgc acgcacgcga atgattatcg tcaggcggtg aatgaaaata
     1741 ccgcactgtt gatgaaagta cataccagta actacagcat tcaggggttc accaaagcga
     1801 tagatgaagc ggaactggtg gcgctcggca aagagctgga tgttcccgta gtgactgatt
     1861 taggcagtgg ctcgctggtc gatcttagcc agtacggttt gccgaaagag ccaatgccgc
     1921 aggagttgat tgcggcgggc gtcagtctgg tgagcttctc cggcgacaag ttgttaggcg
     1981 ggccgcaggc agggattatc gttggtaaaa aagagatgat cgcccgcctg caaagccacc
     2041 cgctgaagcg tgcattacgc gcggataaaa tgaccctcgc ggcgctggaa gccacgttgc
     2101 gtctttattt acaccctgaa gctctgagtg aaaaattacc gaccctgcgc ctgcttaccc
     2161 gcagcgcaga ggtcattcaa atccaggcac aacgtttaca ggctcccctt gccgcacatt
     2221 acggcgcgga gtttgcggta caggttatgc catgtctttc gcagattggc agtggttcgc
     2281 tgccggttga tcgcctgccg agcgcggcat taacgtttac accccatgat ggacgcggta
     2341 gccaccttga gtcattagcc gcccgctggc gtgaattgcc agtgccggtg attggtcgta
     2401 tttatgacgg acgattgtgg ctggatttac gctgccttga agatgagcaa cggtttttgg
     2461 agatgttgtt gaaatgatta ttgcgactgc cggacacgtt gaccacggca aaacaacctt
     2521 attgcaggcg attactggcg taaatgctga ccgtctgccg gaagaaaaaa agcgcggcat
     2581 gaccatcgat ctcggctatg cctactggcc gcagccggat ggtcgcgtgc ctagttttat
     2641 cgacgtaccc ggtcatgaaa agtttctttc caacatgctg gcgggcgttg gtggtatcga
     2701 tcacgcgctg ttggtggtgg cgtgcgatga cggcgtgatg gcgcagaccc gtgagcatct
     2761 ggcgattttg cagctgaccg gtaacccgat gctgacagtg gcgctgacca aggccgatcg
     2821 cgtggacgaa gcgcgtgttg atgaggttga acgccaggta aaggaggtgc tgcgggaata
     2881 cggttttgct gaggcaaaac tgtttatcac cgcagcaacc gaaggtcggg gaattgatgc
     2941 cctgcgcgag catctgcttc agttaccagg acgtgaacac gccagccaac atagtttccg
     3001 cctcgcgatc gaccgcgcat ttaccgtaaa aggtgccggg ctggtcgtca ccggtacggc
     3061 gttaagcggg gaagtgaagg taggcgattc actctggctg actggtgtaa ataaaccgat
     3121 gcgtgtacgt gcgctgcatg cacaaaacca gccaacagaa accgcccatg ccgggcagcg
     3181 tatcgcgctt aacatcgcgg gtgatgcgga aaaagagcag attaaccgtg gcgactggct
     3241 gcttgccgat gcgccgccag agccgttcac acgggtgatt gtcgagcttc aaacccatac
     3301 accgctgacc cagtggcagc cgctgcatat tcaccacgcc gccagccacg tcacgggacg
     3361 cgtttcactg ctggaagata accttgctga actggtcttc gacaccccgt tatggctggc
     3421 agataacgac cgcctggtat tgcgcgatat ctctgcccgc aacacgctgg ccggagcgcg
     3481 cgtcgtgatg cttaacccgc cgcgtcgcgg taaacgtaaa ccagagtatc tgcaatggct
     3541 ggcttccctc gccagggcac agaatgatag cgaagcgtta gccgttcacc tgcaacgcgg
     3601 cgcggttaat cttcctgatt tcgcctgggc gcgccagctc aacggcgaag ggatgcgcga
     3661 actgctgcaa cagcctggct atattcaggc tggttatagc ttgttgaatg cgccggttgc
     3721 cgctcgctgg caacggaaaa ttctcgacac attagcgact tatcatgagc aacatcgcga
     3781 tgaacctggg cctgggcgcg aacgtctgcg acgtatggcg ttgccaatgg aagatgaagc
     3841 gctagtactg ttgctgattg aaaagatgcg cgaaagcggc gacatcctca gtcatcacgg
     3901 ttggctgcat ctgccggatc acaaagcggg cttcagcgaa gagcagcagg ccatctggca
     3961 aaaagcagag ccgctgttta gtgacgagcc gtggtgggtg cgtgatctgg caaaagagac
     4021 gggtaccgac gagcaggcaa tgcgcttgac gctaagccag gcggcgcagc aaggaataat
     4081 taccgcgatc gtcaaagatc gttattaccg taacgatcgg attgtcgaat ttgccaatat
     4141 gatccgcgat ctcgatcagg agtgtggttc aacctgcgcg gcggatttcc gcgatcgctt
     4201 aggcgtaggc cgaaagctgg caattcagat tctggaatat tttgaccgca ttggctttac
     4261 gcgtcgtcgt ggaaatgatc atttattgcg cgacgcatta ttatttccgg aaaaataagg
     4321 aaatgattaa ttaattttta aaataaatta atacaaattt cttatgattt taaaaaaagc
     4381 acattgttta atgaatacaa tgtgcttttt attagattaa ttttgataat taataataat
     4441 gatcatgttt tcgaatgaaa atcctcagta agcttcccac ccttttttac actttcagga
     4501 gtgtgttatg gcatcttcaa ctttctttat tccttctgtg aatgtcatcg gcgctgattc
     4561 attgactgat gcaatgaata tgatggcaga ttatggattt acccgtacct taattgtcac
     4621 tgacagtatg ttaacgaaat taggtatggc gggcgatgtg caaaaagcac tggaagaacg
     4681 caatattttt agcgttattt atgatggcac ccaacctaac cccaccacgg aaaacgtcgc
     4741 cgcaggtttg aaattactta aagagaataa ttgcgatagc gtgatctcct taggcggtgg
     4801 ttctccacac gactgcgcaa aaggtattgc gctggtggca gccaatggcg gcgatattcg
     4861 cgattacgaa ggcgttgacc gctctgcaaa accgcagctg ccgatgatcg ccatcaacac
     4921 cactgcgggt acggcctctg aaatgacccg tttctgcatc atcactgacg aagcgcgtca
     4981 tatcaaaatg gcgattgttg ataaacatgt cactccgctg ctttctgtca atgactcctc
     5041 tctgatgatt ggtatgccga agtcactgac cgccgcaacg ggtatggatg ccttaacgca
     5101 cgctatcgaa gcatatgttt ctattgccgc cacgccgatc actgacgctt gtgcactgaa
     5161 agccgtgacc atgattgccg aaaacctgcc gttagccgtt gaagatggca gtaatgcgaa
     5221 agcgcgtgaa gcaatggctt atgcccagtt ccttgccggt atggcgttca ataatgcttc
     5281 tctgggttat gttcatgcga tggcgtacca gctgggcggt ttctacaacc tgccacacgg
     5341 tgtatgtaac gccgttctgc tgccccatgt tcaggtattc aacagcaaag tcgccgctgc
     5401 acgtctgcgt gactgtgccg ctgcaatggg cgtgaacgtg acaggtaaaa acgacgcgga
     5461 aggtgctgaa gcctgcatta acgccatccg tgaactggcg aagaaagtgg atatcccggc
     5521 aggcctacgc gacctgaacg tgaaagaaga agatttcgcg gttctggcga ctaatgccct
     5581 gaaagatgcc tgtggtttta ctaacccgat ccaggcaact cacgaagaaa ttgtggcgat
     5641 ttatcgcgca gcgatgtaat catcatttcc acaacggctg gcaaattgtc agccgctttt
     5701 tcaactatct ctgtaaccct tgcccgtaaa ttcgtgatag ccgtcgtaaa gctgttaccg
     5761 actggcgaag atttcgccag tcacgtctac ccttgttata cctcacaccg caaggagacg
     5821 atcatgacca ataatccccc ttcagcacag attaagcccg gcgagtatgg tttccccctc
     5881 aagttaaaag cccgctatga caactttatt ggcggcgaat gggtagcccc tgccgatggt
     5941 gagtattacc agaacctgac gccggtgact gggcagctgc tgtgcgaagt ggcgtcttcg
     6001 ggcaaacgag acatcgatct ggcgctagat gctgcgcaca aagtgaaaga taaatgggcg
     6061 cacacctcgg tgcaggatcg cgcggcgatt ctgtttaaga ttgccgatcg aatggaacaa
     6121 aacctcgagc tgttagcgac agctgaaacc tgggataacg gcaaacccat tcgcgaaacc
     6181 agtgctgccg acgtgccgct ggcgattgat cattttcgct atttcgcctc gtgtattcgg
     6241 gcgcaggaag gtgggatcag tgaagttgat agcgaaaccg tggcctatca tttccatgaa
     6301 ccgttaggcg tggtggggca gattatcccg tggaacttcc cgctgctgat ggcgagctgg
     6361 aaaatggctc ccgcgctggc ggcgggcaac tgtgtggtgc tgaaacccgc acgtcttacc
     6421 ccgctttctg tactgctgct aatggaaatt gtcggtgatt tactgccgcc gggcgtggtg
     6481 aacgtggtca atggcgcagg tggggaaatt ggcgaatatc tggcgacctc gaaacgcatc
     6541 gccaaagtgg cgtttaccgg ctcaacggaa gtgggccaac aaattatgca atacgcaacg
     6601 caaaacatta ttccggtgac gctggagttg ggcggtaagt cgccaaatat cttctttgct
     6661 gatgtgatgg atgaagaaga tgcctttttc gataaagcgc tggaaggctt tgcactgttt
     6721 gcctttaacc agggcgaagt ttgcacctgt ccgagtcgtg ctttagtgca ggaatctatc
     6781 tacgaacgct ttatggaacg cgccatccgc cgtgtcgaaa gcattcgtag cggtaacccg
     6841 ctcgacagcg tgacgcaaat gggcgcgcag gtttctcacg ggcaactgga aaccatcctc
     6901 aactacattg atatcggtaa aaaagagggc gctgacgtgc tcacaggcgg gcggcgcaag
     6961 ctgctggaag gtgaactgaa agacggctac tacctcgaac cgacgattct gtttggtcag
     7021 aacaatatgc gggtgttcca ggaggagatt tttggcccgg tgctggcggt gaccaccttc
     7081 aaaacgatgg aagaagcgct ggagctggcg aacgatacgc aatatggcct gggcgcgggc
     7141 gtctggagcc gcaacggtaa tctggcctat aagatggggc gcggcataca ggctgggcgc
     7201 gtgtggacca actgttatca cgcttacccg gcacatgcgg cgtttggtgg ctacaaacaa
     7261 tcaggtatcg gtcgcgaaac ccacaagatg atgctggagc attaccagca aaccaagtgc
     7321 ctgctggtga gctactcgga taaaccgttg gggctgttct gatataagaa gctggtcgca
     7381 ttgggtattc attgcctgat gtgacgctta cgcgtcttat catgcctacg ggaacctgac
     7441 cgtaggccgg ataaggcgta cacgccgcat ccggcataaa caaagcgcac gttgttacaa
     7501 tttacgtttt aaacctacgt gcgcaataat ccagactacg ccaacagaag tgcgtttctg
     7561 gggcgtgttt tgtcaggagt ttaatctcgc gtttcgatgg tgagcgggcg aactaggccg
     7621 taaatcacca ttggtgatcc gaggccaatc agcaataaac
//
LOCUS       DAJVSY010000176         7643 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.178, whole genome shotgun sequence.
ACCESSION   DAJVSY010000176 DAJVSY010000000
VERSION     DAJVSY010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7643
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.178"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..587
                     /locus_tag="OQQ19_003610"
     CDS             <1..587
                     /locus_tag="OQQ19_003610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707232.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1805088.1"
                     /translation="NQLADKQTIKQTLFARQPAKIHKPYPTNSKIIMGDVLNHAALKQ
                     AMQGQDVVYANLTGEDLDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFGEWNNA
                     VIGEPLKPFRRAADAIEASGLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVSRKSV
                     AALITDIIDKPEKHIGENIGINQPVTDGDKPLFM"
     gene            897..1625
                     /gene="mpaA"
                     /locus_tag="OQQ19_003611"
     CDS             897..1625
                     /gene="mpaA"
                     /locus_tag="OQQ19_003611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415842.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide amidase MpaA"
                     /protein_id="HCS1805089.1"
                     /translation="MTVTRPRAERGAFPPGTEHYGRSLLGAPLIWFPAPAASRESGLI
                     LAGTHGDENSSVVTLSCALRTLTPSLRRHHVVLCVNPDGCQLGLRANANGVDLNRNFP
                     AANWKEGETVYRWNSAAEERDVVLLTGDKPGSEPETQALCQLIHRIQPAWVVSFHDPL
                     ACIEDPRHSELGEWLAQAFELPLVTSVGYETPGSFGSWCADLNLHCITAEFPPISSDE
                     ASEKYLFAMANLLRWHPKDAIRPS"
     gene            complement(1600..2565)
                     /gene="ycjG"
                     /locus_tag="OQQ19_003612"
                     /pseudo
     CDS             complement(1600..2565)
                     /gene="ycjG"
                     /locus_tag="OQQ19_003612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707230.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-Ala-D/L-Glu epimerase"
     gene            2684..3190
                     /gene="tpx"
                     /locus_tag="OQQ19_003613"
     CDS             2684..3190
                     /gene="tpx"
                     /locus_tag="OQQ19_003613"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HCS1805090.1"
                     /translation="MSQTVHFQGNPVTVANSIPQAGSKAQTFTLVAKDLSDVTLGQFA
                     GKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNN
                     VITLSTFRNAEFLQAFGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYE
                     AALAVLKA"
     gene            complement(3234..4775)
                     /gene="tyrR"
                     /locus_tag="OQQ19_003614"
     CDS             complement(3234..4775)
                     /gene="tyrR"
                     /locus_tag="OQQ19_003614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator TyrR"
                     /protein_id="HCS1805091.1"
                     /translation="MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFA
                     ELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKV
                     DMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLME
                     ITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVE
                     QAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF
                     GHAPEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVR
                     VICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ
                     GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV
                     AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ
                     KKNEE"
     gene            complement(4923..5984)
                     /locus_tag="OQQ19_003615"
     CDS             complement(4923..5984)
                     /locus_tag="OQQ19_003615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01620 family protein"
                     /protein_id="HCS1805092.1"
                     /translation="MTEPLKPRIDFDGPLEVDQNPKFRAQQTFDENQAQNFAPATLDE
                     APEEEGQVEAVMDAALRPKRSLWRKMVMGGLALFGASVVGQGVQWTMNAWQTQDWVAL
                     GGCAAGALIIGAGVGSVVTEWRRLWRLRQRAHERDEARDLLHSHGTGKGRAFCEKLAQ
                     QAGIDQSHPALQRWYASIHETQNDREVVSLYAHLVQPVLDAQARREICRSAAESTLMI
                     AVSPLALVDMAFIAWRNLRLINRIATLYGIELGYYSRLRLFKLVLLNIAFAGASELVR
                     EVGMDWMSQDLAARLSTRAAQGIGAGLLTARLGIKAMELCRPLPWIDDDKPRLGDFRR
                     QLIGQVKETLQKGKTPSEK"
     gene            complement(5981..7378)
                     /locus_tag="OQQ19_003616"
     CDS             complement(5981..7378)
                     /locus_tag="OQQ19_003616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcjX family protein"
                     /protein_id="HCS1805093.1"
                     /translation="MKRLKNELNALVNRGVDRHLRLAVTGLSRSGKTAFITAMVNQLL
                     NIHAGARLPLLSAVREERLLGVKRIPQRDFGIPRFTYDEGLAQLYGDPPAWPTPTRGV
                     SEIRLALRFKSNDSLLRHFKDTSTLYLEIVDYPGEWLLDLPMLAQDYLSWSRQMTGLL
                     NGQRGEWSVKWRMMCEGLDPLAPADENRLADIAAAWTDYLHHCKQQGLHFIQPGRFVL
                     PGDMAGAPALQFFPWPDVDTWGESKLAQADKHTNAGMLRERFNYYCEKVVKGFYKNHF
                     LRFDRQIVLVDCLQPLNSGPQAFNDMRLALTQLMQSFHYGQRTLFRRLFSPVIDKLLF
                     AATKADHVTIDQHANMVSLLQQLIQDAWQNAAFEGISMDCLGLASVQATTSGIIDVNG
                     EKIPALRGNRLSDGAPLTVYPGEVPARLPGQAFWDKQGFQFEAFRPQVMDVDKPLPHI
                     RLDAALEFLIGDKLR"
     gene            7583..>7643
                     /locus_tag="OQQ19_003617"
     CDS             7583..>7643
                     /locus_tag="OQQ19_003617"
                     /inference="COORDINATES: protein motif:HMM:NF015750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805094.1"
                     /translation="MASISIRCPSCSATEGVVRN"
BASE COUNT         1880 a         2105 c         1842 g         1816 t
ORIGIN      
        1 ttaatcaact ggcagataaa caaaccatta aacaaacttt atttgcccgt cagccagcaa
       61 aaatccacaa accctatcca actaatagca agattattat gggagatgta ctgaatcatg
      121 cagcactgaa gcaggccatg cagggacagg acgttgtgta tgccaacctt acgggggaag
      181 atttagatat tcaggcaaat tcagtgatcg ctgcgatgaa agcctgtgat gttaaacgtc
      241 tgatctttgt tctttccctc ggtatttatg atgaagttcc aggaaaattt ggcgaatgga
      301 ataatgcagt tattggtgag cccctaaaac cattccgcag ggctgcggat gcaattgagg
      361 cttctggact ggaatataca attcttcgcc ctgcctggct gactgatgaa gatattattg
      421 attatgagct tacctcacgc aatgaaccat tcaaaggtac gatcgtatca cgtaagagtg
      481 tcgcagcatt aatcacagat atcatcgata aacctgagaa acacattggt gagaatatag
      541 gtatcaatca acccgtgact gatggtgaca agccattatt catgtaaatc aattacatag
      601 ttaccatcgt aatgtactat gtgcagtacg atttattaaa cttattaagg tgaactgatc
      661 aatccgatgc gattaacatg tgtagaacca gtaagaataa aatacgccat gtatataaca
      721 ttacgactta catctaagtc agcataattc taatatctgc acatcaataa aaatgcaaac
      781 aacttccggc aaaaaaagtg atacaagatc gatgacatag cgttgaagaa aaggatttga
      841 taatccgcaa aatttgcaca acactgcctg taatacttcc tgaaccagag acgatcatga
      901 ccgtaacccg cccacgcgcc gaacgcggcg catttccgcc cggaacagaa cattacggac
      961 gttcattatt gggcgcgccg ttaatctggt ttcctgcccc tgcagccagc cgcgaaagtg
     1021 gtttgattct ggctggcact cacggtgatg aaaactcttc ggtcgtcacg ctctcctgtg
     1081 ctctgcggac gttgacacct tctttgcgcc gccatcatgt ggtgctgtgt gtgaatcctg
     1141 acggctgcca gctggggtta cgggccaatg ctaatggtgt ggatttaaac agaaactttc
     1201 cggcggcgaa ctggaaggaa ggtgaaacgg tttatcgctg gaacagcgcc gctgaagaac
     1261 gtgatgtcgt attactgaca ggtgacaaac ctggctcaga acctgaaacc caggcgctgt
     1321 gccagcttat acaccgcatt caacctgcct gggtggtctc attccacgat ccactggcct
     1381 gtattgaaga tcccagacac agcgaattag gcgaatggct ggcccaggcg tttgaattgc
     1441 ctctggtaac cagcgtcggt tatgaaacgc ctggctcttt cggcagttgg tgtgcagatc
     1501 tcaacttgca ttgcatcacc gcagagtttc cgcccatctc ctccgacgaa gccagcgaaa
     1561 aatatctctt tgcgatggca aacttgctgc gctggcatcc taaagatgca attcgcccgt
     1621 cgtgaactga agcgccggtt ccacatctac cgccagccag gtcggtccgt caagatcggc
     1681 gaaactgacc tgcggcacca gcggtaaagc ggcgctaatg gcacgagagg tacacaacat
     1741 gcagcccagc atcagactga aaccttgtgc acgcgcttca gtcgccagcg ccagcgcttc
     1801 cgtcagacca ccggttttat cgagcttaat gttaaccatc tcatagcgcc ctttcagcgc
     1861 cttcagattg ctacgtgtat gacaactctc atcagcacaa atcggcaacg gatgaataaa
     1921 attctccagc gccgcatcgt cctgcgcagg aaggggttgt tcaagcatcg caacgcctaa
     1981 atccgccaat agctggcaac gcgccgccaa cccttctgca cgccaggatt catttgcatc
     2041 aacgatcagc gtcgcatcgg gcacagctgt gcgaattgcc accatccgct cactaataag
     2101 atggttatcc agcttcactt tcagtaattt cgcgcctgcc tgccagagtg ttgatgcact
     2161 attggccatc tgatcaggcg taccgatgac taccgtctgt gcagtgataa ctgtctcggg
     2221 aagcgttatg ccgatcaaat cagccagcga ttgctgctgt tttcgcgcgg ccagatccca
     2281 caatgcacaa tccagcgcat tacgtgctgc gccggcaggg agaatttttt gcaactcctc
     2341 ccgtgtcagc cctttctcta attgcgacac gacgctcata atttgcgcca ttaccgaggc
     2401 atcactttct ccataacgcg gatacggcgt gcattcgccg gtgcctttaa taccctcttc
     2461 ttccagttca accaccacca cgcgcgcttc actgcgactt ccccgggcaa tcacaaacgg
     2521 ggtatgtaag ggctaggctt cctcaaatac cttaacggtt ctcatcttta ctccttgttg
     2581 tcgcggtggt ctgcggatta agcgcaaata gcgtttgctg tgttattgac agttagcata
     2641 aactaggtgt gacgttaact atatgtaaac aggaaagata atcatgtcac aaaccgttca
     2701 tttccagggc aacccggtta cagtcgccaa ttccatcccg caggcgggta gcaaagcgca
     2761 gacttttact ctcgtggcaa aagatctgtc tgacgtcacc ctcggtcagt ttgcgggtaa
     2821 acgcaaagtg ctgaacattt tcccgagtat tgataccggt gtttgcgccg catcagtacg
     2881 taagtttaac caactggcaa ccgagatcga caacaccgtt gtgctgtgta tttctgccga
     2941 tctgccgttc gcccagtctc gtttctgcgg cgcagaaggt ctgaacaacg ttatcaccct
     3001 ctccactttc cgtaacgctg aatttctgca agccttcggt gtggcaattg ctgatggccc
     3061 actgaaaggt ctggcagcgc gtgccgttgt ggttattgac gaaaatgaca atgtgatttt
     3121 cagccagctg gtggatgaaa tcaccaccga gccggattac gaagcagctc tggctgtact
     3181 gaaagcataa gttaatatgc ctgatggtgt tgcaccatca ggcatattcg cgcttactct
     3241 tcgttcttct tctggcttaa gccatattcc cgcaacttat tggcaatcgc ggtatgtgaa
     3301 acgccgagac gttttgccag tttgcgcgtg ctgggataat tgcgataaag ctgggttaat
     3361 accgagcgtt caaaacggct ggtgatttcg tccagcgaac cttccatcgc atcttcgccc
     3421 acggctaccg ttgcggcgtc ataatccggc aacaaaatat cctgtggacg cagctcataa
     3481 ccgtccagtt gtgtcagtgc gcgatatata gcgttcttta actgccgcac atttcccggc
     3541 cacgcataac gcgtaagtac agtattcagg tcagcggcca gtttcggacg cggcacgccc
     3601 tgctcgtcgg caaagcgggc gacgaacagc tcagttaacg gcatgatgtc ctgcggacag
     3661 tcacgtagcg gcggcagatt gagcgtcaac acgttcagac gataatagag atcttcacgg
     3721 aacatgcctt tttgcaccag ttcgaccaga ttcttctgcg tagcgcaaat cacccgcaca
     3781 tcgacatgca cctcatggtc ttcgccaacc cgacggaaag tgccatcatt aagaaaacgc
     3841 agtaatttcg cctgcatccg tggtgacatt tcccctattt catccaacag caccgaacca
     3901 ccgttcgcct gctcaaagaa tcctttcttc ccttccggag catgaccaaa cagttcactc
     3961 tcgaccgcat cttccggtat agacgcacag ttcagcgcca ggtaaggttt gcccgctctg
     4021 gggcttgcct gatggcaggc gtaggcaaag agatctttac ctgtacctgt gtcacccgta
     4081 atcagcagcg gcgcgcttag catcgccagt ttctgcgcct gttcgacaac atgcttcatt
     4141 ttcgggctga cggcgacaat ttgactgaag gcgctgacgt cctgggcggc gacattttgc
     4201 aactggcggc ccatacgaat cgttgatcgc aacatcacca ccgcaccggt caggacgtgt
     4261 tgatcatttt catcctgaag ataaacaggc gtaatctcca tcaggaaatt ctgcccatta
     4321 ataacgacat gctcgttatg cgaatcttgc ggttcgcttt ccagccaacg taaaaaatta
     4381 aagccgttaa tcaattgtgc ggcggtatgg ttgcgcaggc gatccaattt ttgcccaaaa
     4441 agctgacagc tcgccgggtt cgccatatcc actttgcttt tcatatcgac agagagcaca
     4501 ggttcgggca acgcctccag taacgcgctc aacgccagat gctcacgttc ggaaggcatc
     4561 cacgggacag tacgcacatc ggtaacacct gcaatacggc gtatttcggc catcagactg
     4621 ctgaaactct caaactccag ttcagcaaaa ttgaggtaga ttcgcccaat gggatcaatc
     4681 tcaataccgc gtaaatcaat gcctcttagc acgagtagat cgagtaattc gcgggtcaga
     4741 ccgagtcggt cttcacaaaa gacttccaga cgcatgggaa ccttcacctg aaaaaagaac
     4801 aattaatatg atgatatgac actatttgga tagcaggaag gtttctgtca acaatcattg
     4861 acacaaagac ggaaaaacgg gcacttcggc gtaaagatat ccggtcagca cccgatattg
     4921 cattattttt cgctgggcgt tttgcctttt tgcagcgttt ctttcacctg accgataagc
     4981 tgacgacgga aatccccgag gcgaggtttg tcatcgtcaa tccacggcag cgggcggcaa
     5041 agctccatag ctttaatccc gagtcgtgcc gtcagaagtc cagcaccaat tccctgagct
     5101 gcgcgggtag acaaacgagc agcgagatct tgcgacatcc agtccatccc cacttcgcgc
     5161 accagttcgc tggctccggc aaaagcgata ttcagcaata ccagcttaaa cagacgcaaa
     5221 cggctgtaat accccagttc aatgccatac agcgtggcga tgcgattaat taaacgcaga
     5281 ttgcgccagg cgataaacgc catatcgacc aacgccagcg ggctgaccgc aatcatcaac
     5341 gttgattccg ccgccgaacg gcagatttcg cgccgcgcct gggcatctaa aactggctgg
     5401 accaaatgcg catacaaact gaccacttca cggtcgtttt gcgtttcatg gattgaggca
     5461 taccagcgtt gcagcgctgg atgagactga tcaatacccg cctgctgcgc cagtttttcg
     5521 caaaatgcgc ggcctttgcc cgtgccgtgg ctgtgcaaca aatcgcgcgc ttcgtcgcgt
     5581 tcatgggcgc gctgtcgcaa gcgccataag cgccgccact ctgttaccac agaacctacg
     5641 ccagcgccga taatcaatgc cccagcggca catccaccca gcgccaccca gtcctgagtt
     5701 tgccaggcat tcattgtcca ctgtacaccc tgcccgacaa cgcttgcgcc aaacagagcc
     5761 agcccgccca tcaccatttt gcgccacagg ctgcgtttcg gacgtaacgc tgcatccatt
     5821 accgcttcaa cttgcccctc ttcttcaggc gcttcatcga gcgtggccgg ggcaaaattt
     5881 tgcgcctgat tttcgtcaaa ggtctgctgc gccctgaatt ttggattctg atcgacctcc
     5941 agcggaccgt cgaaatcaat acgtggtttt aacggttcgg tcatcgcaat ttatctccta
     6001 ttaaaaattc cagcgcggca tcaagacgaa tatgcggcag cggtttgtcg acatccatca
     6061 cctgcgggcg aaacgcttca aactggaacc cttgtttgtc ccagaacgcc tgaccgggca
     6121 aacgcgcagg aacttcaccg ggataaacgg tgagtggcgc accatcgctg agccggttac
     6181 cgcgcaatgc cggaattttc tcgccgttga cgtcaataat gccgctggtg gtcgcctgca
     6241 ccgaggccag ccccaggcaa tccatactaa tcccttcaaa cgccgcattt tgccaggcat
     6301 cctgaatcag ttgttgcagt aatgaaacca tattggcgtg ctgatcgatg gtcacatggt
     6361 ccgctttagt ggcagcaaac aatagcttat cgataaccgg cgaaaacaaa cgccggaaca
     6421 aggtacgctg cccgtagtgg aaactttgca tcagctgcgt cagtgccaga cgcatatcat
     6481 taaatgcctg tggcccactg ttgagaggtt gcaggcaatc aaccagcaca atctggcggt
     6541 caaagcgcag aaaatgattc ttatagaacc ccttcaccac cttctcgcag taataattaa
     6601 accgctcgcg cagcattccg gcattggtgt gcttatcggc ctgcgccagt ttggactcgc
     6661 cccaggtatc gacatccggc cacgggaaga attgcagcgc gggcgcacct gccatatctc
     6721 ctggcaagac aaagcgccct ggctgaataa agtgcagccc ctgctgttta cagtggtgga
     6781 gataatcggt ccacgcggcg gcaatgtctg ccagccggtt ttcgtcggca ggtgctagcg
     6841 ggtccagccc ttcgcacatc attcgccatt tgaccgacca ttcgccgcgc tgaccattga
     6901 gtaagcccgt catctggcgt gaccagctta aatagtcctg cgccagcatc ggcaggtcga
     6961 gcaaccattc gccgggataa tccacaatct ccagatacag cgtggaggtg tccttgaagt
     7021 ggcgtagcag cgaatcgttc gatttaaaac gtagcgccag gcggatttca ctgacgccgc
     7081 gcgttggcgt cggccaggcg ggaggatcgc catataactg cgccagtcct tcatcatatg
     7141 tgaagcgcgg aatgccaaag tcacgctgag gaatgcgttt tacgcccagc aggcgctctt
     7201 cacgcaccgc gcttaacagc ggcaagcgtg ctccggcgtg aatattgagc aactgattga
     7261 ccatagcagt gataaacgct gttttgccgc tgcggcttag tccggttacg gcgaggcgca
     7321 gatgtctgtc gacaccccga ttcaccagcg cattaagttc atttttaagt cgcttcattg
     7381 ctgtcctgtg ctgctctgaa gaccagaaaa aaatcattcg taaggatatg aatgtggggg
     7441 ccaggccatt gattatcaac tgcccgtgtt gtcatcgacg ggcgaactcc ataagatgtg
     7501 cagcattcac gttcggacgg agttcctggt aatgctgcca acttactgat ttagtgtatg
     7561 atggtgattt taaggtgctt gcgtggcttc catttccatc agatgtcctt cctgctccgc
     7621 tactgaaggc gtggtgcgta acg
//
LOCUS       DAJVSY010000177         7642 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.179, whole genome shotgun sequence.
ACCESSION   DAJVSY010000177 DAJVSY010000000
VERSION     DAJVSY010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7642)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7642)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7642
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.179"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            565..3978
                     /locus_tag="OQQ19_003618"
     CDS             565..3978
                     /locus_tag="OQQ19_003618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000438152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HCS1805095.1"
                     /translation="MEQSLNFEMLRSQWPELAELACMAERYVHSDPESCLVKLRNYTE
                     LMVRWLYRQERLPEGIKANLYDLMNADVFTSMMPEAIIMKMDALRIHGNRAAHGGRIK
                     AKDTYWLLKEAYLLGIWLYVRYAHGNVDDCPKFTLPPLTQSSGRADEKRLEDAIKAQD
                     ESRERELALQRALQQEQEKAEHLTQRLNEARARNQHVADILSIDEAETRRRLIDSRLL
                     AADWNVGEELKNTDQVTQEHPVKEQPTTSGDGYADYVLWDEAHKPLAVVEAKKTSVNA
                     EQGRIQARLYADWLEKEYGQRPVIFYTNGYDIWLWDDHKTHGYPPRRVFGFYSKESLQ
                     YLIQQRETRLPLNRVPHVKDNEGKAVAGRLYQLETIARVSERFTNKYRQSLIVQATGT
                     GKTRVAIALSKLMIDARWVKRVLFLCDRKELRKQAANAFNQFTNEPLYVVGKSKKADR
                     QNARIYIATYPGMMKIMDHFDVGYFDLIIADESHRSIYNVYGDLFKYFDALQIGLTAT
                     PIDMVSKTTFGLFGCEGRIPTANYSLEDAIADNNLVPYEVVTHTTEFLREGIKREKLS
                     DAQIRELEEQGIDPNTLEFDGKALDEAIYNKDTNRYILRNLMENGLKDRDGQLPGKTI
                     IFARNHKHALLLNELFDDMYPQFAGRFCQVIDNYDPRAEQLIDDFKGLDESTNKELTI
                     AISVDMLDTGIDVPEIVNLVFAKPVKSKVKFWQMIGRGTRLCPGLYGYDDNGKPLDKQ
                     KFRIFDHWGNFEYHELHTEEAEVTATKSLAQKRFEAWVMLGAAAQRKFDKQAVDLVAH
                     QLREQINALDEKSIAVQEKWQQKAQYSDEKVLRQLSPKTQQDLLSVLAPLMQWLDVRG
                     QSDAIRFDMDILAAQTARYTNPEELDVLWPIIVEKVERLPPHLAQVQQQGQRINQLRN
                     LSWWKQASLEELEDIRIHLRGIMHLMEKDATPKFGSIQVDITEDANLIQTETRKTNIR
                     SIDFKLYRQQVQGALEPLFQQNPVLKKIRNGEPVTQNELDELAKLVLIQNPNVDIRAL
                     KEFYPQATASLDKLLRTIIGMDSDAVEVRFAQFAADNSLTSQQLRFLSLLKNHIRDYG
                     TIEMRQLFEQPFTHIHNEGVTGVFPDIAQIARLQKIVEELGVVTDAATV"
     gene            4042..5676
                     /locus_tag="OQQ19_003619"
     CDS             4042..5676
                     /locus_tag="OQQ19_003619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HCS1805096.1"
                     /translation="MITGDLKSKIDGLWEDFWVGGITNPLTVIEQITYLMYSRMLDTQ
                     EQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQAD
                     ASKVTLLGNFMKDARLEIVKPSLLTKAVEVIKNLPLDRGDTKGDLYEYLLSKLTTAGI
                     NGQFRTPRHIIRTMVEMMEPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHT
                     EIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVDAP
                     DIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSLDEEDIDSTLSAMVKTKKTELL
                     FLARILQMLKVGGRSATIVPQGVLFGSSKAHQSLRKTLVEDNQLETVINLPSGVFKPY
                     AGVATAILIFTKGGQTDEVWFYDLQNDGYSLDDKRNPIKDNDLPHLLASWKHYRTLRG
                     LPVDNFMGKKLASLLKQQYPEGINAGVDFKDRTQAAFVVPKADIAAQKYDLSINRYKE
                     VVYQAEEYEDPKVILKRLKDLEKEILADLDELEGML"
     gene            5685..6755
                     /locus_tag="OQQ19_003620"
     CDS             5685..6755
                     /locus_tag="OQQ19_003620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001438891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HCS1805097.1"
                     /translation="MVKLGDVINVHYGKALKADQRVSNGSVHVFGSSGIVGNHDKTLC
                     SYPTIIIGRKGSVGAITWAPSGGWIIDTAYYVEIKDNNKLDLRYLFYILSGIDLTKKT
                     ITTSIPGLNRDDLYDTFIKLPPFEEQKRIVDLLDKAEGIRQKREQSIKLADDFLRATF
                     ATMYGNPITNPKKWPVHLMGEIIEFKGGNQPPKSDFIFEPKQGYIRLVQIRDFKSDKY
                     ATYIPQEKAKRIFEVDDVMIARYGPPVFQILRGLSGSYNVALMKASPKENIRKGFIFY
                     LLQLPEYHDVVVKNSERTAGQTGVNLELLNKFNVPLPPIYYQDEILDRLARIEKFKEK
                     IEISLNHLEIQFLSLQKRLIGF"
     gene            complement(6880..7596)
                     /locus_tag="OQQ19_003621"
     CDS             complement(6880..7596)
                     /locus_tag="OQQ19_003621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000947861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805098.1"
                     /translation="MLSETKKRIPAHLFRMIKDELYELVLTDDPKGKLYVRDSEKIEE
                     GVSTTEFVVGYGAISMVKKSESMATKGLVGLERVDLIREVVFENGYYDWGCVVNDVLP
                     NICKGNARIPIFHFLNHAKLINPDGSIINETELSGGVLSRLNITPISFQSQGWDKRRS
                     ETVPEVKVGVNELYLAYDFSFFLRMMPYMEPGLIKRDMGELLKILKKHIDEAMNTQVL
                     SSNFCKLVCIYDYIKNSHRY"
BASE COUNT         2221 a         1739 c         1794 g         1888 t
ORIGIN      
        1 gtcctgttct cccaaatatc atggtattga tacgggagat tatgccgtac aggtacgaca
       61 cgttatgtcg tgccaaaggg gagtggatag aaaaaatggc gaagatgcga aaagttgatt
      121 aatgcattga aaaaaatgaa ttaataatga acttgggtaa aagcgccatc aaaatacgac
      181 acgacctgtc gtattttgtg ttagccggga aaagatatct gctacttact aaaatgattt
      241 agtgctgaaa atatttataa gccaataaat agacaggtat tacggagtaa cgcccaggct
      301 attttaacga gcctgctgtt ttattggctc aaaaaacata tcccatagat gatcagccat
      361 acccgcgtta gtgagcaagg tatcccttga gtagccaggg ctgaagatgc ccattgatgg
      421 gcgaaaacca aggttctggc cgttaaagcg gctatgtcgt taaacacatc accaccatat
      481 gccatccggc tcacttcgtc ggccaaatta gtgtgatatt ctttccagaa tttctgttgt
      541 atccacaaca taaggcgatg attgatggag cagtctctca attttgaaat gttgcgcagc
      601 cagtggccgg aactggcaga actcgcatgt atggcagagc gctatgttca ctccgatccg
      661 gaaagctgcc tggttaagct gcgcaactac accgaattga tggtgcgctg gttgtatcgt
      721 caggagcggt tgccggaagg tattaaggct aatctttacg atttaatgaa cgctgatgtc
      781 tttaccagca tgatgccgga agccatcatc atgaaaatgg atgcgctgcg tatccatggc
      841 aaccgtgccg cgcacggcgg acgtatcaaa gctaaagata cttactggct gctcaaagaa
      901 gcgtatttgt tgggaatttg gctgtatgtt cgctacgccc acggtaatgt tgatgactgc
      961 cccaaattta cactccctcc attaacacaa tcttcaggtc gtgcagatga aaaacgtctg
     1021 gaagatgcaa tcaaggctca ggatgaaagc cgtgagcgcg aactggcgct acaacgcgca
     1081 ctacagcaag aacaggaaaa ggccgaacac ctcactcaac gcctgaatga agccagagcg
     1141 cgtaaccagc atgttgccga tattctctct attgatgaag cggaaacccg ccgtcgcctg
     1201 attgactctc gcttacttgc agccgactgg aatgtagggg aagaacttaa aaacacggat
     1261 caagtcacac aagaacatcc agtcaaagag caacccacca cctctggtga cggttatgca
     1321 gactatgtct tgtgggatga ggcacacaaa ccgttggcgg tggtggaagc aaaaaaaacc
     1381 agcgtcaatg ccgagcaagg acgaattcag gcccggctgt atgcagactg gctggaaaaa
     1441 gaatacggtc agcgtccggt catcttctac accaacggct atgatatctg gctgtgggat
     1501 gaccataaaa ctcatggtta tcccccgcgt cgggtgtttg gcttctacag caaggaaagc
     1561 ctgcaatatc ttattcagca gcgtgaaacc cgtctgccgc tgaacagagt gccacacgta
     1621 aaagataacg aaggtaaggc cgttgccgga cgtttgtacc agctcgaaac cattgcccgc
     1681 gtcagtgaac ggtttaccaa caagtaccga caatcgttaa ttgttcaggc tacgggtaca
     1741 ggcaaaaccc gcgtggcaat tgcactaagc aaactgatga ttgatgcccg ctgggtaaaa
     1801 cgcgtcctgt ttctttgcga ccgtaaagaa ctgcgtaaac aggcggcaaa tgcctttaat
     1861 caattcacca atgagccgct gtatgtggtc gggaaatcga aaaaagcaga caggcagaat
     1921 gccagaatct acatcgctac ctatcccggt atgatgaaaa tcatggacca tttcgatgtc
     1981 ggttatttcg atttgatcat cgccgatgaa tcccaccgct ctatctacaa cgtctacggc
     2041 gatctgttta agtattttga tgccctccag attggcctga cggccacgcc aattgacatg
     2101 gtgagtaaaa ccactttcgg cctgtttggt tgtgaaggac gtattcctac cgccaactac
     2161 agcctggaag atgccatcgc cgataacaat ctggttccct atgaggttgt cacacacaca
     2221 acagaattcc tgcgcgaagg tatcaaacgg gagaaattaa gcgacgcaca aatccgcgag
     2281 ctggaagaac aaggcataga tcccaatacg ctggagtttg atggcaaggc gctggatgag
     2341 gcgatctaca acaaagacac caaccgctat atcctgcgta acctgatgga aaatggcctg
     2401 aaagatcggg acggccagtt gcctggtaaa accatcattt tcgcccgtaa ccacaaacac
     2461 gcgctgctgt tgaatgaatt gttcgacgat atgtacccac agtttgccgg gcgcttctgc
     2521 caggtcatcg acaactacga tccccgcgcc gagcaactga ttgatgattt taaagggctg
     2581 gatgaaagca ccaacaaaga gctgaccatc gctatctccg ttgacatgct cgataccggt
     2641 attgatgtcc cggaaattgt gaatctggtc tttgccaaac cggtcaaatc aaaagtgaag
     2701 ttctggcaga tgattggccg tggtacgcgc ctctgtccgg ggttgtacgg ttacgacgat
     2761 aacggcaaac cgctggataa acagaaattc cgcattttcg atcactgggg caattttgag
     2821 tatcacgagc tgcataccga agaggcggaa gtcacagcga caaaatcgct tgcgcaaaaa
     2881 cgcttcgaag cgtgggttat gctgggggcc gctgcgcagc gtaaattcga caaacaggcg
     2941 gtggatttag ttgctcacca gcttcgcgag caaatcaacg cactggatga aaagtcgatt
     3001 gccgtacagg aaaaatggca gcagaaagcg cagtacagtg atgaaaaggt gctgcgccag
     3061 ctttctccga aaacacagca ggatctgcta tctgttctgg ccccgttgat gcagtggctg
     3121 gacgtgcgcg ggcaaagcga tgccatacgc tttgatatgg atattctggc ggcgcaaact
     3181 gcccgttata ccaacccgga agagctggat gttctctggc cgatcatcgt cgaaaaagtg
     3241 gagcgcctgc cgccgcattt ggcgcaggtg cagcaacagg gacaacgaat caatcagctt
     3301 cgtaatttaa gctggtggaa gcaggccagc ctggaagagc tggaggatat tcgcattcat
     3361 ttgcgcggta tcatgcacct gatggaaaaa gacgcgacgc ctaaatttgg ttcgatacag
     3421 gtggatatta ccgaagatgc gaacctgatc cagacggaga cccgcaaaac taatatccgc
     3481 tcgattgatt tcaaactcta tcgccagcag gttcaggggg cgctggagcc gctgttccag
     3541 caaaacccgg ttctgaagaa aatccgcaac ggcgagccag tcacgcaaaa cgagctggat
     3601 gagctggcga agctggtgct gatccagaac cccaacgttg atattcgtgc gttgaaagag
     3661 ttttatccgc aggcaaccgc cagcctggat aaacttttgc gtaccatcat cgggatggac
     3721 agcgacgcgg tggaagtgcg ttttgcccag ttcgccgctg ataacagcct gaccagccaa
     3781 caactgcgct tcctgtcatt gctgaaaaac cacattcgcg attacggcac cattgaaatg
     3841 cggcagctct ttgaacagcc ttttacgcat atccacaacg aaggcgttac cggtgtgttc
     3901 cctgatatag cgcaaatcgc ccgcctgcaa aagatagtcg aagagctggg tgttgtgacc
     3961 gacgcagcga cggtataata cacgcatgac aagccccggc agcggggctt ttgtatttaa
     4021 aacaggatat aaacgctaac aatgattact ggcgacttaa aaagtaaaat cgacggacta
     4081 tgggaagatt tctgggtggg tggtatcacc aacccgctga ccgtaatcga acagatcacc
     4141 tatctgatgt attcccggat gctggatacc caggaacaac gcgacgaaaa gcgtaaacaa
     4201 atcgcgggta ttgattttaa accgcgtttt gcgccagaac agcaggagtt ccgtttcagt
     4261 cactatagca accttggctc ggatgagatg atggaagtgg tgcgcgatgg cgtattccag
     4321 catttccgtc agctcggcca ggccgatgct tcgaaggtga cgctgctggg caactttatg
     4381 aaagatgctc gtctggagat tgttaagccg tcattgctga ccaaagcggt tgaggtaatc
     4441 aaaaacctgc cattggatcg cggcgacacc aaaggcgacc tttacgaata cctgttaagc
     4501 aagctgacaa ctgccggaat caacggacag ttccgcacac cgcgccacat tatccgcacg
     4561 atggttgaaa tgatggagcc gaacccggcc cgcggcgaga cgatttgcga tcccgcctgt
     4621 ggcaccggtg gttttctggc aaccagctat gaatatctgc tggagaagta cagctcgctg
     4681 gaatccattc atactgagat tggcaccaac gaacgtggcg agctggaaga gcaaaaaatc
     4741 tttaccggcg atctgctgac accgtggcgt aaccatgtgg ataacaacat gttccacggt
     4801 tacgactttg acaccacaat gctacgtatc gccgccatga acctgattat gcacggcgtg
     4861 gatgcgcctg atatccacta tcaggacaca atgagccaga gtttcagcac aaacttcccg
     4921 caggccagta aaaacgcctt caacctgatt ctggcgaacc cgccgtttac cggttcactg
     4981 gacgaggaag atatcgactc cacgctgtcg gcaatggtga aaaccaaaaa aaccgaacta
     5041 ctgttcctgg cgcgtattct gcaaatgctg aaagtgggcg ggcgcagtgc cactatcgtg
     5101 ccgcagggcg tgctgtttgg ctctagcaag gcgcaccagt cacttcgcaa aacgctggtg
     5161 gaagataacc aactggaaac ggtgatcaat ctgccttctg gtgtatttaa accttacgct
     5221 ggcgtggcga cggcgatcct gatctttacc aaaggcggtc aaacggatga ggtctggttc
     5281 tacgatctac aaaatgacgg ctacagcctg gatgataagc gcaacccgat aaaagacaac
     5341 gatctgccgc atctgctggc aagctggaag cattaccgta ctttacgcgg gctaccggtt
     5401 gataacttta tgggtaagaa gttagcctcg ttgcttaaac agcagtaccc ggaagggatt
     5461 aatgctggcg ttgattttaa agatcgcacg caggcggcgt ttgttgtacc gaaagcggat
     5521 attgctgcgc agaaatacga tctatccatc aaccgttata aagaagtcgt gtatcaggcg
     5581 gaggaatatg aagatccgaa ggtgatattg aagcggttaa aggatctgga aaaagagatt
     5641 ctggcggatt tggatgagct ggaggggatg ctgtgagttc ggcgatggtg aagttagggg
     5701 atgttattaa tgttcactac ggaaaagcat taaaagctga tcagcgtgta tcgaatggaa
     5761 gtgtccatgt gtttggtagt tcaggaattg tcggcaacca cgataaaacg ctttgcagct
     5821 atcccacgat aattattggc cgcaaaggca gcgttggtgc tattacctgg gctccaagcg
     5881 gaggctggat cattgatact gcttattacg ttgagatcaa agataataat aagttagatc
     5941 tccgatactt gttttatatt ctgagcggaa ttgatctcac taagaaaacg attaccacaa
     6001 gtattcctgg attaaataga gacgatctct atgatacatt tattaaatta ccaccttttg
     6061 aagagcagaa acgaattgtg gatcttctcg ataaagctga gggtatacgc caaaaacgtg
     6121 agcaatccat caaactggct gatgattttt tgcgtgctac gtttgctaca atgtatggga
     6181 atcctattac aaaccccaaa aaatggcctg tccatcttat gggagaaatt attgaattta
     6241 aaggtggaaa tcaaccacct aaaagtgatt ttatttttga acctaaacag ggttatatta
     6301 gattagtaca aattagagat tttaaatccg ataaatatgc gacgtacatt ccgcaagaaa
     6361 aagcaaaacg tattttcgaa gttgatgatg ttatgattgc tcgttatggg ccacctgtgt
     6421 ttcaaatact tagaggttta tccggcagct acaatgtagc tttaatgaaa gcttcaccca
     6481 aagaaaatat taggaagggg tttatattct atcttctaca acttccggaa tatcatgatg
     6541 ttgttgtaaa aaactctgaa agaacagcag gacaaaccgg tgtaaatctt gaactattaa
     6601 acaaattcaa tgttcccctc ccacctatat actatcaaga tgagatatta gatagattag
     6661 ctagaattga aaaatttaaa gaaaaaatag aaatatcatt aaatcattta gaaatacaat
     6721 ttttatcact acagaagaga ttaataggtt tttaaatcct tagtatcgaa ataaacatta
     6781 atttattata ttaaattaag atattttagg aaattaaggc gtcactctta ggtaacgcct
     6841 ttttttacta tctcgccccc taagaaggtt atatcttact taatacctgt gactattttt
     6901 gatataatca taaatacaca ctaatttgca aaaattactt gacaacacct gagtattcat
     6961 agcttcatct atatgttttt tcaatatttt gagaagctct cccatatcgc gcttgattaa
     7021 tccaggctcc atataaggca tcattcttaa aaagaaactg aaatcataag caagatataa
     7081 ctcattgacc cccaccttga cctcaggaac ggtttcagag cgtcgtttat cccatccttg
     7141 agactgaaaa ctaataggag tgatatttaa tcgtgataaa acgccacctg agagttctgt
     7201 ttcattaatt atactcccat caggattaat taatttagcg tgatttaaga agtgaaaaat
     7261 aggaatgcgc gcattgcctt tgcatatatt tggcaaaaca tcattaacaa cacatcccca
     7321 atcataatat ccattttcaa atacaacctc tcggatgaga tctacacgct ccagtccaac
     7381 caatccttta gttgccatcg attccgattt ttttaccatc gaaatagcac catatcccac
     7441 aacaaactca gttgtactga ccccttcttc aattttctct gaatccctca catataattt
     7501 tcctttcgga tcatcagtta agaccaactc ataaagttca tcttttatca ttcggaataa
     7561 atgtgctgga atcctttttt tagtttcact cagcacctca aatatttctt tataggatgg
     7621 tgcctgaaca tattttaccg gg
//
LOCUS       DAJVSY010000178         7625 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.180, whole genome shotgun sequence.
ACCESSION   DAJVSY010000178 DAJVSY010000000
VERSION     DAJVSY010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7625
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.180"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..311)
                     /locus_tag="OQQ19_003622"
     CDS             complement(<1..311)
                     /locus_tag="OQQ19_003622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreA"
                     /protein_id="HCS1805099.1"
                     /translation="MLTKDLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGV
                     VFKTIGFFIANEVSPRFDHLVKEDTGFIGFKNMEQIAEHPLEENLAALRRLKEDYPDK
                     V"
     gene            complement(305..1543)
                     /gene="preT"
                     /locus_tag="OQQ19_003623"
     CDS             complement(305..1543)
                     /gene="preT"
                     /locus_tag="OQQ19_003623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreT"
                     /protein_id="HCS1805100.1"
                     /translation="MPQQNYLDELTPAFTPLLAIKEASRCLLCHDAPCSQACPAQTDP
                     GKFIRSIYFRNFKGAAETIRENNALGAVCARVCPTEKLCQSGCTRAGVDAPIDIGRLQ
                     RFVTDFEQQTGMEIYQPGTKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAQPG
                     GWLRNGIPQFRLPQSVLDAEIARIEKMGVTIKCNNEVGNTLTLEQLKAENRAVLVTVG
                     LSSGSGLPLFEHSDVEIAVDFLQRARQAQGDISIPQSALIIGGGDVTMDVASTLKVLG
                     CQAVTCVAREELDEFPASEKEFTSARELGVSIIDGFTPVAVEGNKVTFKHVRLSGELT
                     MAADKIILAVGQHARLDAFAELEPQRNTIKTQNYQTRDPQVFAAGDIVEGDKTMVYAV
                     KTGKEAAEAIHHYLEGACSC"
     gene            complement(1940..2179)
                     /locus_tag="OQQ19_003624"
     CDS             complement(1940..2179)
                     /locus_tag="OQQ19_003624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2542 family protein"
                     /protein_id="HCS1805101.1"
                     /translation="MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVY
                     VWRAKNPGLFFAYMVAYIGFGILSIGMIVYLIFYR"
     gene            complement(2182..2901)
                     /gene="sanA"
                     /locus_tag="OQQ19_003625"
     CDS             complement(2182..2901)
                     /gene="sanA"
                     /locus_tag="OQQ19_003625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane permeability protein SanA"
                     /protein_id="HCS1805102.1"
                     /translation="MLKRVFLSLLVLIGLLLLTVLGLDRWMSWKTAPYIYDELQDLPY
                     RQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTM
                     RKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHM
                     GIQAQCYAVPSPKDMLSVRIREFAARFGALADLYIFKREPRFLGPLVPIPAMHQVPED
                     AQGYPAVTPEQLLELQKKQGK"
     gene            complement(3051..3935)
                     /gene="cdd"
                     /locus_tag="OQQ19_003626"
     CDS             complement(3051..3935)
                     /gene="cdd"
                     /locus_tag="OQQ19_003626"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HCS1805103.1"
                     /translation="MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSA
                     TGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVH
                     AEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDY
                     LPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECK
                     DGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDAT
                     SATLKALGCHSIDRVLLA"
     gene            complement(4065..4760)
                     /locus_tag="OQQ19_003627"
     CDS             complement(4065..4760)
                     /locus_tag="OQQ19_003627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidB/LrgB family autolysis modulator"
                     /protein_id="HCS1805104.1"
                     /translation="MMANIWWSLPLTLIVFFAARKLAARYKFPLLNPLLVAMVVIIPF
                     LMLTGISYDSYFKGSEVLNDLLQPAVVALAYPLYEQLHQIRARWKSIITICFIGSVVA
                     MVTGTSVALLMGASPEIAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAV
                     FGHTLLNAMHIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVLCGIITSLI
                     APFLFPIILAVMG"
     gene            complement(4757..5155)
                     /locus_tag="OQQ19_003628"
     CDS             complement(4757..5155)
                     /locus_tag="OQQ19_003628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HCS1805105.1"
                     /translation="MSKTLNIIWQYLRAFVLIYACLYAGIFIASLLPVTIPGSIIGML
                     ILFVLLALQILPAKWVNPGCYVLIRYMALLFVPIGVGVMQYFDLLRAQFGPVVVSCAV
                     STLVVFLVVSWSSQLVHGERKVVGQKGSEE"
     gene            5394..6344
                     /gene="dusC"
                     /locus_tag="OQQ19_003629"
                     /pseudo
     CDS             5394..6344
                     /gene="dusC"
                     /locus_tag="OQQ19_003629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311053.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(16) synthase DusC"
     gene            complement(6732..6815)
                     /gene="yohP"
                     /locus_tag="OQQ19_003630"
     CDS             complement(6732..6815)
                     /gene="yohP"
                     /locus_tag="OQQ19_003630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YohP"
                     /protein_id="HCS1805106.1"
                     /translation="MKIILWAVLIIFLIGLLVVTGVFKMIF"
     gene            7039..>7625
                     /locus_tag="OQQ19_003631"
     CDS             7039..>7625
                     /locus_tag="OQQ19_003631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HCS1805107.1"
                     /translation="MNRDSFYPAIACFPLLLMLAGCAPMHETRQALSQQTPAAQVDTA
                     LPTALKNGWPDSQWWLEYHDNQLTSLINNALQNAPDMQVAEQRIQLAEAQAKAVATQD
                     GPQIDFSADMERQKMSAEGLMGPFALNDPAAGTTGPWYTNGTFGLTAGWHLDIWGKNR
                     AEVTARLGTVKARAAEREQTRQLLAGSVARLYWEW"
BASE COUNT         1966 a         1959 c         1910 g         1790 t
ORIGIN      
        1 aatactttgt ccgggtaatc ttctttcagc cgacgcaggg cggccagatt ctcctccagc
       61 ggatgctcgg caatctgctc catatttttg aagccgataa aaccggtatc ttctttcacc
      121 agatgatcaa aacgcggcga gacttcgttg gcgataaaaa agccgatcgt tttaaacacc
      181 acaccgcccc aacctgtgtc gtaggctttg gcacacatct catagcagtt gcctaccggc
      241 gaagaagaga ggcagaacgg gttgggaaac ttcacgccgc aaaaagtaat cgaaagatct
      301 ttcgttaaca tgagcaagct ccctctaaat agtgatgaat cgcctcggcg gcttctttcc
      361 cggttttcac ggcatagacc atggttttgt caccctcaac aatatcgcca gcagcaaaga
      421 cttgcgggtc gcgggtctgg taattttgtg ttttgatggt gttacgctgc ggctctaact
      481 ccgcaaaggc atctagtctg gcatgctgac cgacggcgag aataatttta tctgccgcca
      541 tcgtcagttc gcccgataac cgtacatgct taaacgtgac tttattgcct tccacggcta
      601 ctggcgtgaa tccatcgatg atcgaaacgc ccagctcccg ggcgctggta aactcttttt
      661 cgcttgccgg aaactcatct aactcttcac gcgctacgca agttaccgcc tgacagccga
      721 gaactttcag cgtgctggct acgtccatcg tgacatcacc gccgccgata attaatgcgc
      781 tttgtggaat gctgatatcg ccttgcgcct gtcgtgcacg ttgcaagaag tcgacggcaa
      841 tctcaacgtc actatgctca aacagcggta gcccggaacc gcttgataac cccacggtga
      901 ccagtaccgc gcggttttct gctttcagct gctcaagggt gagtgtgtta ccgacttcgt
      961 tgttgcactt aatggtcacg cccatttttt caatacgggc gatctctgca tccagtactg
     1021 attgcggtaa ccggaattgc ggaatgccgt tacgcaacca gccaccgggt tgtgcttctt
     1081 tctcatagat cgtgacgtca taaccctggt ttgtcagtgt cacactggcc tgcaatccgg
     1141 caggacctgc gccaataatc gcgactttgc cgagcgtttt agtaccgggc tgataaattt
     1201 ccatcccggt ttgttgttca aaatcagtaa caaaacgctg taagcggccg atatcaatgg
     1261 gagcatcaac accggcacgg gtacaaccgc tttggcataa tttctccgtc gggcacactc
     1321 tggcacaaac ggcaccgagg gcattatttt cgcgaattgt ctcggcagcg cctttaaaat
     1381 tacgaaagta gattgagcga ataaatttcc ccggatcggt ctgtgccggg caagcctgac
     1441 tacagggagc gtcgtgacat aataaacagc gagaggcttc tttaatcgcc agtaacggcg
     1501 taaaagccgg agtgagttca tccagataat tttgttgcgg catgtgatct tccttaatgc
     1561 tatgagtaat taaggcgaac gctaaatata ctcgtcatac ttcaagttgc atgtgctgcg
     1621 tctgcgggtt attcggccca tccatgggcc tcacccctta tggggccgct gcagggagcg
     1681 ttcaaatccg ctccatgcgg atttgtcgct caccccagtc acttacttat gtaagctcct
     1741 ggggactcac tcacttgtcg ccttcctgca actcgaatta tttagagtat aaatattgcg
     1801 tgctgatatt aaggctatgc gcgtggggaa atttatactg tgaaaggatt cacaaatagc
     1861 tgcggttcag aatgttatat ccgcagctta ttgagtgaag taataattat tctcaataat
     1921 taacagaaaa gagaaaatat taacgataga aaataagata aacaatcatg ccgatagata
     1981 aaattccgaa gccgatatat gccaccatat aagcgaaaaa gagtccggga ttttttgctc
     2041 gccagacata caccggttcc ggtgcatttt taacccgttt atcaatcgcg cctgcgcgcc
     2101 agcctttcca tgcttcgcgg aaacaaaata tcggaataag gaaaaaaacg gcaacgacaa
     2161 aaaactgctg tacatccata actactttcc ttgtttcttt tgtaattcaa gtaactgttc
     2221 gggtgtgacg gcgggatacc cctgcgcatc ttccggcacc tggtgcatag ccggaatagg
     2281 gaccagcggc cctaaaaaac gcggttcacg tttaaaaata taaaggtcag ccagcgcacc
     2341 gaaacgggcg gcaaattcgc gaatacgtac tgacagcata tctttcggtg acggtacggc
     2401 ataacactga gcctgaatcc ccatatgcag cgcaataaat aatgcccgct cacagtggaa
     2461 acgttgggtg ataataatga aatcattagt atcgaaaact ttgcgtgtac gcacgatgga
     2521 atccagcgta cgaaagcctg cgtaatcgag aacaatatct gatgggtcga caccagcagc
     2581 gattaaatct ttgcgcatgg tcatcggctc attataactt tgcaatgcgt tatcgccgct
     2641 cagtaataga taatttacct taccgctgtt ataggcatta atcgctcctt gaatgcggta
     2701 gcgataatac tgattaatta cgccagtacg ataatatttt gctgttccga gcaccacacc
     2761 gacctggcgg taggggagat cctgcaattc gtcgtagata taaggcgcgg ttttccagct
     2821 catccagcga tcgaggccga gcacagtcaa caacagcaag ccgatcagga ctaacaggct
     2881 gaggaacacg cgctttaaca tgcaggagac tcgatctaag gaaaatttcc atcaggctac
     2941 tttacccgct ggttttgcgc aagaaacggc aaactgtttg ccgggaattt cgacaccagg
     3001 agagggctgg caagccggac aaggcgttca cgccgcatcc ggcaccaggc ttaagcgaga
     3061 agcactcggt cgatactgtg acagccgaga gctttcagcg ttgcggaggt ggcatcccac
     3121 tgaatcaacg gcgcatcggc tttttctgcc agaaccgcgc gctggatatc cgggtaatca
     3181 taacccttga gattcaacag aattaacgct ccctgcaacg gtggcagagt cgggttgaat
     3241 gcggcgtttt cagcgtagct gccactgaaa atacgaccgt ctttacattc cagcgcgaca
     3301 ccgcttggcg acttactgta aggcatgtgc gaacggtttg ccgctgcaat cgccgcctga
     3361 gaaagcgcat caccagtcag cgcatagccg tgatcctgct cgtccatcag cagcgtttta
     3421 atctccagat ctttcggccc aaaggcatcc ggcagatagt cacgcagcgc gtgtgcctcg
     3481 cggcccggca gatgaatacg cagatccaga ccgctgttca gttcattcat aaactgacgg
     3541 cagtgaccac aaggcgtgta gttaacggtg atggctgcaa gcgctttttc accactcaac
     3601 caggcgtggc tgatcgcgct ttgttcggca tgaacggttt gctgcattgt cgcaccaata
     3661 aattccatat tggcaccgaa ataccaggtt ccgctcacac cgcgcgcaat tgcgccaaca
     3721 ttaaaattcg acaatggcgt acgcgcacag gccgctgcca gcggaagtag tgcgaatgcc
     3781 agcgcgtctt cgtccagccc cgttgcgctc ttcagcgatg agacttgctc cccggtcaac
     3841 aaagcgggga agtacttgtc tgccagaata ggttccagtg cagattgcaa gttatccgca
     3901 agttgggcaa aagcggtttg aaaacgtgga tgcatggcgt tgcctcataa tcatgtaatg
     3961 ggataacagt ttacgaaccc gttatggctt tatatgtgat ctgaatctca ttaattatgc
     4021 aacgcgtgaa acttacatca aaaatgcgcg acgcatcgca aattttagcc cattactgcc
     4081 agaataatcg ggaaaaggaa cggtgcgatc agcgaagtaa ttatcccgca taacaccagc
     4141 gctagcgaac taaatgcacc ttcctgataa tccagctcgg cgcagcgcgc cgtaccgagg
     4201 gcgtgcgagg cagtccccat tgccagaccg cgcgcagctt tggtacgaat atgcatcgca
     4261 ttaagcaatg tatggccaaa taccgcgccg aggatgccga cgaaaatcac gcaaactgcg
     4321 ctgattgccg gaataccgcc aatactgccg ccaaccgcca ttgcaatagg cgtggtgact
     4381 gatttcggca ggattgacgc ggcgatttcc ggtgaagcgc ccatcaacaa tgccacggaa
     4441 gtccccgtca ccatcgcaac cacgctgccg ataaaacaga tggtgatgat cgatttccag
     4501 cgcgcgcgga tctggtgtag ctgctcatat aaaggatagg ccagcgcgac gaccgccggt
     4561 tgcagcagat cgtttagcac ttcgctacct ttaaagtagc tgtcgtaaga gatgccggtc
     4621 agcattaaaa aagggatgat caccaccatt gctaccagca acgggttaag caagggaaac
     4681 ttataccgtg ccgccagttt gcgggcggca aaaaagacga tcaatgtcag tggtaatgac
     4741 caccagatat tagccatcat tcttctgatc ctttctgacc tacgacttta cgttcaccgt
     4801 gcaccagttg cgaactccag ctcaccacca gaaaaaccac cagtgtactg acagcacagg
     4861 aaaccactac cgggccaaac tgtgcgcgga gcaaatcaaa atattgcatg acgcctacgc
     4921 caatcggcac aaacaatagc gccatatagc gaatcagtac gtagcacccc ggattgaccc
     4981 attttgccgg aagaatttgc aaggccagca ggacaaacag gatcagcatc ccgatgatgc
     5041 tgcccggaat ggttaccggt agcagggaag caatgaaaat gcctgcatac aggcaggcat
     5101 aaatcaggac gaaagcgcgt aaatattgcc agataatgtt cagtgtctta ctcataatca
     5161 acaccccaga tgagatgaat tcatcataca attaattcgt aaaacgtgct accgatcaca
     5221 ttaagaaatc agcgcttatt ttttcgctcc ccggcattac gcaatgcgca acgaactcag
     5281 gcatacatca agcatagaga gggattacag tttgcagcaa tccctctttg cagaccttta
     5341 atccgttgac cataggcgct aacatagcgc ctcatttttt tgcgggtgaa gatatgcgtg
     5401 tgttactggc tccgatggag ggtgtgcttg actctctggt gcgtgaattg ctgaccgaag
     5461 ttaacgacta cgatctgtgc atcaccgagt ttgtccgcgt ggtggatcaa ctgctgccgg
     5521 taaaagtttt tcatcgcatt tgccctgagc tacaaaacgc cagccggaca ccatccggta
     5581 cgctggtgcg cgtgcagttg ttgggtcagt tcccacaatg gctggcagag aatgccgccc
     5641 gtgcggtgga attaggttcc tggggcgtgg atctcaattg cggctgcccg tcgaaaacgg
     5701 tcaacggtag cggtggtggg gcgacgttac tcaaagatcc tgaactcatc tactagggtg
     5761 caaaagcgat gcgtgaagct gtaccggcgc atttgcccgt cagcgtgaaa gtgcgtctgg
     5821 gctgggacag cggtgagaag aaatttgaaa tcgccgatgc ggttcaacag gctggtgcta
     5881 cggagctggt ggtgcatgga cggacaaaag agcagggtta ccgcgcggag catattgact
     5941 ggcaggcgat tggcgagatt cgccagcggc tgaatattcc ggtgattgcc aacggtgaaa
     6001 tctgggactg gcagagtgcg caacaatgta tggcgatcag cggctgcgac gcagtgatga
     6061 ttggtcgcgg ggcgctcaat attcccaacc tgagccgggt ggtaaaatat aacgaaccgc
     6121 gaatgccgtg gccggaggtg gttgctttgc tgcaaaaata tacccgtctg gaaaagcagg
     6181 gcgataccgg gttatatcac gttgcgcgga ttaaacagtg gttgagttat ttgcgtaaag
     6241 aatacgatga agcaacggaa ttatttcagc atgttcgggt gttgaataat tcccctgata
     6301 ttgcaagggc tattcaggca attgatatcg ataagctgcg ataatagtgg aatcgcagtt
     6361 tatcagagac aatgaatcgc ttattcagct tcatcatctt gttgcgctcc tttcatgagc
     6421 taagccacat attgccactg gcgcaaggag cgcgcagggg gaggacaatc gcctcctccc
     6481 cctgcccccc cgggctctgg cgaacaaaat cgccgctgcg cggtaccttc agcttatccc
     6541 cttcggctac cgggtcgggc gcgaggtaac gtccttgtaa gacgcgccct cagcccacat
     6601 ccatgtgggc tgccccggcc ttcggggaac gcttcagcga ttttgacgcc accaacaccg
     6661 gagctgtttg caaatcaagt acacaaaata tctagttcct gacctgacaa cttatatgcc
     6721 atatctgatt tttaaaatat catcttaaat acgccagtca ccaccagtag cccaatcagg
     6781 aaaataatca atacagccca gagtataatt ttcattggcg ttcctttatt tgtgagtgtt
     6841 gaataagtat aggaaaaaac gaagcccttt gccgttatcc ataaacgatt aagataaatc
     6901 ggaagatatc attcacttag tctatatttt tctgggtatg tcgttttatt gctactgatg
     6961 tattgccacg cgaaactaaa aaatatatcg caacacacgg taatctccgc gcaccgtttc
     7021 ttacctgatt attcccccat gaatcgtgat tccttttatc cagccatcgc ctgttttccg
     7081 ctgttattga tgctggccgg gtgtgcgcct atgcatgaaa cccgccaggc gttaagccag
     7141 caaacgcccg ctgcacaagt tgacaccgca ttacccacgg cgctgaaaaa tggttggcca
     7201 gacagccaat ggtggctgga gtatcacgat aatcagctca cttcattaat taacaatgca
     7261 ctacagaacg caccggatat gcaggtggct gaacagcgca ttcagctagc tgaagcccag
     7321 gcgaaggcag ttgccactca ggatggtccg cagatcgact tttcggcgga tatggagcgg
     7381 caaaaaatgt cggcagaagg cttaatgggg ccgtttgctc tgaacgatcc ggccgcaggt
     7441 acgaccggcc cgtggtacac caacggtact tttggcttaa cggcgggctg gcatctcgat
     7501 atctggggaa agaatcgggc ggaggttact gcccgcctgg gtacggttaa agcacgggcg
     7561 gcggaacgcg agcaaacccg ccaattgctg gctggcagcg tagcccgcct gtactgggag
     7621 tggca
//
LOCUS       DAJVSY010000179         7472 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.181, whole genome shotgun sequence.
ACCESSION   DAJVSY010000179 DAJVSY010000000
VERSION     DAJVSY010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7472
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.181"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..339
                     /locus_tag="OQQ19_003632"
     CDS             <1..339
                     /locus_tag="OQQ19_003632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HCS1805108.1"
                     /translation="QTEAFLNAYGLSRFAPLGYDPRDLPIRDLAGYRKKGNHDGDPII
                     FYTFPAAFEQEIAKGFNTKQFAEVLKNAGMLTPPTSGRGYQGRVREDGRQIRVYVLNF
                     MAEESSQPEE"
     gene            714..1148
                     /locus_tag="OQQ19_003633"
     CDS             714..1148
                     /locus_tag="OQQ19_003633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000126714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HCS1805109.1"
                     /translation="MTAQISAYGRLVADPQTRTTTNGNNMAMARLAVSLPCNAAEAGE
                     STFWLGVIAFGKQADALAKHQKGDLVSVAGNMQLNQWTGQDGGTQQGYQVVADSVISA
                     RTVRPGGKAGQRGQATDALRRAQQPSRDEYDQRPPFDDETPF"
     gene            1159..1800
                     /locus_tag="OQQ19_003634"
     CDS             1159..1800
                     /locus_tag="OQQ19_003634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002436679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805110.1"
                     /translation="MSTQPIIIEFGSYRWPRHLAIHEADHAIAAWFFGIQEVEIALSG
                     NNRVAKTYLSGDVDECGAVAVWHANYPRNVAEVKSYTLSNDDTRLRLIDQVCRAMVIS
                     LAGIVAQSRYTGDDINALMETSGKADMKNVRDLSEVYRVAGGEDADIQRISLSRAEAL
                     IALKWWDVIALAKILENRNHMPASNFQRIMGDIDKPVPKPMTLAELDELVGEE"
     gene            1797..2147
                     /locus_tag="OQQ19_003635"
     CDS             1797..2147
                     /locus_tag="OQQ19_003635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805111.1"
                     /translation="MKPYILAAGLISSAPALSAIHCGGFTIQPDRYRTTINGDVVHIV
                     DAQFYGAPRDFSQAAIKLLPDAITTTDRQYRLETQGGNALLELMTRENPPRVLNRERC
                     DAGLTSFGWYTSAP"
     gene            2841..3452
                     /locus_tag="OQQ19_003636"
     CDS             2841..3452
                     /locus_tag="OQQ19_003636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001205651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805112.1"
                     /translation="MRDRTRSYTTDLPRIGLPFLANMRSRLADAEPGTQLYTQTESGT
                     LYAFRQADSYAMTINGVTRAIRTTTTKAGYGVREWYACPHCMKRAAKLYIGKKDIGCR
                     ACWKLHYKSQSADILDRMRMKIRQQRCAIWGSNDLANNLFNDIRMFPKPKGMRWATFD
                     RKRAELSVMEMAYWQAFSPVVDRITGVIERKAGKAARGIGLTL"
     gene            3990..4532
                     /locus_tag="OQQ19_003637"
     CDS             3990..4532
                     /locus_tag="OQQ19_003637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid pRiA4b ORF-3 family protein"
                     /protein_id="HCS1805113.1"
                     /translation="MYQLKITIRDSKPPIWRRVLVPEQIPFSELHAVIQLAFGWNDEH
                     LYMFEKGRKGDPGSEYRVWGEDESMGNAAITPLWAALQNDGDKLVYTYDFGDWWDCVI
                     VLEKQTHDTSNQPISCLRGKGTTPVENSGGLHGYNELLLQARESDNPEQAEIHNFLML
                     DIERRVYDLSSINDRLQTLN"
     gene            complement(4525..4884)
                     /locus_tag="OQQ19_003638"
     CDS             complement(4525..4884)
                     /locus_tag="OQQ19_003638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001405000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805114.1"
                     /translation="MRMTSRKKEILSYFEPDNLEWVTGEIGAPPFDVSGVAYLLHGMV
                     SFDKRHQLESTRRTLESMVAGGLLERVTVYESRQIRRGGETNATVVRYGLPGQCAVMR
                     DTGGADNAISGEYMRVS"
     gene            5318..6142
                     /gene="dinD"
                     /locus_tag="OQQ19_003639"
     CDS             5318..6142
                     /gene="dinD"
                     /locus_tag="OQQ19_003639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312547.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage-inducible protein D"
                     /protein_id="HCS1805115.1"
                     /translation="MNEHHQPFEEIRHYGTEGQEFWSARELAPLLDYRDWRNFQKVLA
                     RATQACEASNQAASDHFVETTKMVVLGSGAQRELEDVHLSRYACYLVVQNGDPAKPVI
                     AAGQTYFAIQTRRQELADDEAFRQLREDEKRLFLRNELKEHNKQLVEAAQQAGVATAI
                     DFAIFQNHGYRGLYGGLDQKAIHQRKGLKKNQNILDHMGSTELAANLFRATQTEEKLK
                     RDGVNSKQQANTTHFDVGRKVRQTIQELGGTMPEELPTPQVSIKQLENSVKITEKK"
     gene            6434..7051
                     /locus_tag="OQQ19_003640"
     CDS             6434..7051
                     /locus_tag="OQQ19_003640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312548.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HCS1805116.1"
                     /translation="MLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGG
                     SVRDILLGHYPLGWVKHPEYVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSI
                     IGAQVALDMGHGPIIAVVAAVTTGVFGGVLRDMFCKRIPLVFQKELYAGVSFASAVLY
                     IALQHYVSNHDVVIISTLVFGFFARLLALRLKLGLPVFYYSHEGH"
     gene            complement(7048..7472)
                     /gene="ligB"
                     /locus_tag="OQQ19_003641"
                     /gene_synonym="yicF"
                     /pseudo
     CDS             complement(7048..7472)
                     /gene="ligB"
                     /locus_tag="OQQ19_003641"
                     /gene_synonym="yicF"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312549.2"
                     /note="this ligase is similar to LigA but it lacks the
                     C-terminal BRCT domain; catalyzes strand joining of nicked
                     DNA in the presence of a divalent cation and NAD+;
                     internal stop; incomplete; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
BASE COUNT         1997 a         1836 c         1907 g         1732 t
ORIGIN      
        1 cagacggagg cgtttttgaa tgcctatggg ctgagtcgat tcgcgccgct gggttatgac
       61 ccgcgcgatt tacccatccg tgatttagcc gggtacagga agaaggggaa ccacgacggc
      121 gacccgataa ttttctacac cttcccggca gcgtttgagc aggagattgc aaagggcttc
      181 aataccaaac agtttgccga agttctaaag aatgcaggaa tgcttacacc accaacgagc
      241 gggcgaggct atcaggggcg agtaagggag gatgggcgac agattcgcgt ctatgtactc
      301 aatttcatgg cagaggaaag cagccagcca gaagaataat tatttcttca catgcgtagt
      361 tttagtgttg tctcggttgt ctttgttgtc tcaatttgta attgagattg atttataagg
      421 attttatttt aatttctgag acaacaccga gacaacattt agccattttg agacaacagg
      481 gcgaaagtgt gtttttagtc tggcaggcag tgagacaaca tttatgccgg gtgagacaac
      541 acgaaattgc aaatgttgtc tcagcaaaac ccagacgtgg cgcggcctgt agagccgtga
      601 gacaacaaag acaacagaga caacactatt tttgcttact atgaaaaaaa atcggcaggt
      661 gtcccacatt aagaaatcgt cattagcaaa actaataatc cagtgagggg aaaatgacag
      721 cacaaatttc agcatacggg cggctggtgg cagatcccca gacccgcacc acaacgaacg
      781 gtaacaacat ggctatggcg cggctggcgg tgtctctccc ctgtaatgcg gcagaggcgg
      841 gagagtcaac cttctggctg ggcgttattg cttttgggaa gcaggccgat gcgctggcaa
      901 agcaccagaa aggcgacctt gtgagcgtgg caggcaatat gcaactcaac cagtggacag
      961 ggcaggacgg cggtacacag caggggtatc aggtagtagc cgacagtgtg atcagcgcca
     1021 gaacggtacg ccccggcggg aaggcaggac agcggggaca ggcaacggac gcgctgagac
     1081 gtgcgcagca gccatcccgt gatgaatacg accaacgccc accattcgac gatgaaacgc
     1141 cattctgaga gggaagatat gagtacgcaa cccatcatta ttgagttcgg cagctatcgc
     1201 tggcccagac atcttgcaat acatgaagca gatcatgcga tagccgcatg gtttttcggc
     1261 atacaggagg tagaaattgc gttatcgggt aataaccgag tggcaaaaac ctaccttagc
     1321 ggcgatgttg atgaatgtgg agctgtcgcg gtatggcacg ccaactatcc acggaatgtg
     1381 gctgaggtta agtcttacac cctctcgaat gatgacacca ggttacgtct gatagaccag
     1441 gtatgccggg ctatggttat ctctctggct ggtatcgtcg cgcaatcacg ctatacgggg
     1501 gatgatatta acgcactgat ggaaacgtcc gggaaagcag acatgaaaaa tgttcgtgat
     1561 ttatcagagg tataccgggt ggctggtggg gaggatgctg atatacagag aatatccctt
     1621 tcccgtgctg aggcgctgat tgccctgaaa tggtgggatg ttatcgcgct ggcgaaaata
     1681 ctggagaacc gtaaccatat gcctgccagc aacttccagc gcattatggg tgatattgac
     1741 aagcctgtac caaagcctat gacgctggct gaactggatg aattggtggg tgaagaatga
     1801 agccatacat tctggcagcc ggcctgatct cctcggcacc ggcactatct gctatccatt
     1861 gtgggggctt taccatacag ccagaccgtt atcggacaac gattaacggc gatgtggttc
     1921 atattgttga tgcgcaattt tacggcgcac cgcgagactt tagccaggcc gccataaagt
     1981 tattgccgga tgccattacc actaccgata ggcaataccg cctagagacg cagggaggca
     2041 atgccttgct tgagttgatg accagagaaa acccgccacg tgtgcttaat cgtgagcgct
     2101 gcgatgccgg gttaacaagt ttcggttggt acacttctgc gccgtgatgt tcgttccgag
     2161 cgcagcctaa aatattggac tgttcttgac ggatttaaaa ctctaatgga gccaagtcct
     2221 tgccagtagc gggctaggag cctaattgtg attcaggtcg tcaaaaatat tcaggtttgc
     2281 ggcattggtt cgcagtacgc agtccggtac gcggcaaaac tgcgcattta acgtgcgtac
     2341 cacctgacga attctaacgc cggcattgca aacagatgcg tgcgcaaaat ggctaagacg
     2401 tctgatattg ctggctttgg ctcaatcagt ttggaggtgg cggtatcagt acgatgctaa
     2461 tttttgctaa ggttttagta cgcaactcag gtacgcactc tcaccagata cgaaaccgat
     2521 tcgcagttgc gtaccagcct gtaaggcgca ttatcgctgg gtttctacag tcgaatgcag
     2581 tacgcaaagt ggaaaatcct ccgaatacga aacccgagca ttgcgcagta aattgcgaat
     2641 tgcgcagtta acaaaatatc tccgcaaaac gaaacggata tcaatgcgca aaccatcctc
     2701 aacccccgcg cggttactgg ctttattgat gtgaaattgc aaaattggtg cgcaatttac
     2761 agtaaaatac gcatattatt tcgtattcaa tttgcgcacc gttcgcagtt aatgcgcagt
     2821 aattcgcagg aggccagcca gtgagagaca gaacgcgcag ctataccacc gacctgcccc
     2881 gtatagggtt gccattcctt gcgaacatgc gtagcaggct ggcggatgct gaaccgggta
     2941 cgcagcttta tacccagacc gaaagcggaa cgttgtatgc cttccggcaa gccgacagct
     3001 acgccatgac aatcaacggc gtgacgcggg ctattcgcac cacaaccacg aaggccgggt
     3061 atggcgtccg ggaatggtac gcttgccccc actgtatgaa gcgggctgca aagctgtata
     3121 tcggcaagaa agacattggc tgccgggcgt gctggaaact tcactataaa agccagagtg
     3181 ccgacatact ggacaggatg cgcatgaaga tacgccagca gcgatgcgcg atatggggca
     3241 gcaatgacct tgccaataat ctgtttaatg acattcgcat gttcccaaaa ccaaagggga
     3301 tgcgctgggc tacgtttgac aggaagcggg cagagttatc agttatggag atggcttact
     3361 ggcaggcatt cagcccggta gtggacagaa tcacgggcgt tattgagcgt aaagcaggaa
     3421 aagcagccag aggcattggc ctgactctat aaaagcaaaa cgcccgcacg gggcgtcaga
     3481 gaacgggata gacttctgcg acaatttgca ttcgccgcca atatagcaag ccgtccacat
     3541 caagcaataa actatcaccg ggagggggag gccaaatctc tgcaatcctg agccttaagg
     3601 actgcccgcc ccatcgtttt ttcatacccg cgaaaaatga aatttaatcc gggcgtgttt
     3661 catccttcca gagggtatga cgtatgacac cacgcgaaat agccttattg accatcgcca
     3721 aacttgagca tggaggccac cagcttacac aggcagatca acgggagata gaacgctcag
     3781 ttaatgccga tatagcccgg cgcgacaggt tccgcgaaat gatgcgagca cctgcctacc
     3841 agtggaagaa gccagcgccg cgcaggtaga tacgggatta ttccgcatgt aacttatgcg
     3901 tattaagcaa atttccttta ttcaccttta cagaattgtg agtacgtcag tatcgttatc
     3961 cttccgattc gcatttattc aggatttgca tgtaccagct aaagataacc atccgagaca
     4021 gcaaaccacc tatatggcgg cgtgtgctgg ttccagagca aatccccttt agtgaacttc
     4081 acgcggtgat ccagttggct tttggctgga atgacgaaca cctgtatatg ttcgagaaag
     4141 ggcgtaaagg tgatcccggt agcgagtatc gcgtatgggg tgaggatgaa agcatgggta
     4201 atgcggcaat cacaccacta tgggcagcgc tccagaatga tggtgacaag ctggtttaca
     4261 cgtatgactt tggcgactgg tgggattgcg tcattgtgct ggagaagcaa acacacgata
     4321 cgagcaatca gcccattagc tgcctgcgtg ggaaaggcac caccccggtg gaaaactcag
     4381 gcggcttgca tggttacaat gaattgctat tacaggccag agagtctgat aatcctgagc
     4441 aggccgagat ccacaatttc ctgatgctgg atattgagcg ccgggtttac gacctgagca
     4501 gcatcaacga cagattgcag actcttaact gaccctcata tattcgcctg atattgcgtt
     4561 atcagcgccg ccagtatcgc gcataacagc gcactgaccg ggcaaaccgt agcgcacgac
     4621 cgttgcgtta gtctcaccgc cgcgccgtat ctggcgcgat tcatacactg tcacccgctc
     4681 aagcagtcca ccagcaacca tgctttccag tgtgcgccgg gttgattcga gctggtgacg
     4741 cttatcgaac gacaccatgc catgaagcag gtaggccaca cccgacacat cgaacggcgg
     4801 cgcaccaatc tcaccagtca cccattcgag gttatccggt tcaaagtagc taagtatctc
     4861 ttttttgcgg ctggtcattc tcatagctgg caggttcctt attgtgggat agcactatca
     4921 tacaataagg cgcaaaagat aagaggccag aacagcaagc atgagagcat aaaacgagca
     4981 gccaaagaca gcgcctcaaa ataccgtgta cacaagggtg tacctactga gaaaacgcat
     5041 tacaagaaac acagcaacca cgggcgttta aagccactac tcaataaaca gattcaactc
     5101 gtaacgccaa ttcttacttt tcagccttca caaatgccgc ccactcaaac agagcggcat
     5161 ttttcttccc cgcaacttca attctgtttt gcgtgcctgc tccagatttt gcgatgtttt
     5221 tttgcccagc acactgagaa cgtgagatac tcacaactgt atataaatac agttacagat
     5281 ttactttctt tgcaatcgat atcacatgga gtgggcaatg aacgaacatc atcaaccttt
     5341 tgaagaaata cggcattatg gcactgaagg gcaagaattt tggtcagcta gagaattggc
     5401 accgttactg gattatcggg actggcgcaa ttttcaaaag gtactggccc gcgcgactca
     5461 agcgtgcgaa gccagcaatc aagctgcatc tgaccatttc gttgaaacca ccaaaatggt
     5521 tgtattaggt tcaggggctc aacgagaact tgaagatgtt catctctccc gctatgcctg
     5581 ttacctggta gtacaaaacg gcgaccctgc gaaaccggtt attgcggcag ggcaaactta
     5641 ttttgctatc cagacccgac ggcaggagct ggctgacgat gaagctttca ggcaacttcg
     5701 tgaagacgaa aagcgtcttt ttctgagaaa tgaattgaaa gaacataaca aacaattggt
     5761 tgaggcagcg cagcaagctg gggtagcgac agctatcgat ttcgccatat ttcagaatca
     5821 tggttaccgg gggctgtatg gtggattaga tcagaaagct attcatcagc ggaaggggct
     5881 gaaaaagaat cagaatatcc tggatcatat gggttcaaca gaactggcgg ctaatctctt
     5941 tcgagctacc caaacagaag aaaaactcaa gcgggatggc gtgaattcaa aacagcaagc
     6001 aaacaccaca cactttgacg tgggtcgcaa ggtgaggcaa accattcagg aacttggcgg
     6061 aaccatgcct gaggagttgc cgaccccgca ggtcagcatc aagcagttgg aaaacagtgt
     6121 aaaaattaca gagaagaaat agcagaaact aaaaactctt tttcttaatt gagatacccg
     6181 atgcgtaagc caaagtccag gtgcagtgaa cacaatggct aaacattgca cctttctttt
     6241 ccacccctca attttaacct attttttctt atgcattttc tcagacaaga actcagaata
     6301 atgcatctac gctacagaaa atagcgattt cacataacta caagttatca atttcctctt
     6361 accttaaaaa atctcaatcg tgacaatgcg cacaaatcgc taccctgcca gacagatttt
     6421 tagggagaga accatgctgt tacacatttt gtatttggtt ggcatcactg ccgaagccat
     6481 gacgggggcg ctggcggccg gacgacggcg catggataca tttggcgtaa ttattattgc
     6541 gaccgccacc gcaattggcg gagggtcagt gcgcgatatt ctgctgggcc actatccgct
     6601 cggctgggtc aaacacccgg aatatgtgat tatcgtcgct accgccgcag tactcaccac
     6661 tatcgttgct cctgtaatgc cttacctgcg caaagtgttt ctggtgctcg atgcgctcgg
     6721 actggtggtc ttttctatca tcggcgcaca ggttgcactg gatatggggc acggcccaat
     6781 tattgccgtt gtcgcggcgg taaccaccgg cgtgtttggc ggcgttttgc gcgatatgtt
     6841 ctgtaaacgc atcccactgg tattccagaa agagttgtat gctggtgtct catttgcctc
     6901 cgccgtgctg tacatcgcgc tgcaacacta tgtttctaac catgatgtgg tgattatctc
     6961 caccctggta ttcggctttt ttgcccgctt actggcgcta cgtcttaagc tgggattacc
     7021 ggtcttttac tacagccacg aaggtcacta aggttcaaaa cctgtgatct gctgggcagc
     7081 cagccaactg cccagcttct tgatttgcgc attttccttc cattcaataa cctgtctggc
     7141 gcgcccagat ccagtccccg gcagctgctg tcagaactgc tccgtgctaa ataaaagttg
     7201 cgactaggac cgttcatcac tggcattaag cgccgcccgg gttagcggta ttcccattgc
     7261 catcacccag cgagtaaaag gctgcttacg agccagatta aactgatgcc ataactgcgc
     7321 acttttactt ttcgcgatcc ccggcgtgtt ctgtaattgc tctggcgtta ataaaagcca
     7381 agaaaagata tgctcaaagc gatgagtctg atgcagcgcg cgccaaccgg cctcaccaat
     7441 gccatccagc ccaagaacct gttttgaccc ca
//
LOCUS       DAJVSY010000180         7471 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.182, whole genome shotgun sequence.
ACCESSION   DAJVSY010000180 DAJVSY010000000
VERSION     DAJVSY010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7471)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7471)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7471
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.182"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(128..607)
                     /gene="folK"
                     /locus_tag="OQQ19_003642"
     CDS             complement(128..607)
                     /gene="folK"
                     /locus_tag="OQQ19_003642"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HCS1805117.1"
                     /translation="MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILAVSSFYRTP
                     PLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQDRVRKAERWGPRTLDLDIMLF
                     GNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELAFPDGETLREVLHTRAFDELSKW"
     gene            complement(604..2022)
                     /gene="pcnB"
                     /locus_tag="OQQ19_003643"
     CDS             complement(604..2022)
                     /gene="pcnB"
                     /locus_tag="OQQ19_003643"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000174652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HCS1805118.1"
                     /translation="MTLPRCTIFTRVANFCRKVLSREESEAEQAVARPQVTVIPREQH
                     AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKL
                     FRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGS
                     IEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLR
                     AVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEY
                     HLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLL
                     ETAQKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQG
                     KRAWKLLEHPKFRAAYDLLALRAEVERNAELQRLVKWWGEFQVSAPPDQKGMLNELDE
                     EPSPRRRTRRPRKRAPRREGTA"
     gene            complement(2061..2987)
                     /gene="gluQRS"
                     /locus_tag="OQQ19_003644"
     CDS             complement(2061..2987)
                     /gene="gluQRS"
                     /locus_tag="OQQ19_003644"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001432381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HCS1805119.1"
                     /translation="MLPPYFLFKEMTDTQYIGRFAPSPSGELHFGSLIAALGSYLQAR
                     ARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWL
                     HEQGLSYYCTCTRARIQSIVGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGII
                     HADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLF
                     GWKVPDYIHLPLALNPQGAKLSKQNHAPALPKGDPRPVLITALQFLGQQVEAHWQDFS
                     VEQILQSAVKNWTLTAVPESAIVNSTFSNASC"
     gene            complement(3024..3479)
                     /gene="dksA"
                     /locus_tag="OQQ19_003645"
     CDS             complement(3024..3479)
                     /gene="dksA"
                     /locus_tag="OQQ19_003645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002209354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HCS1805120.1"
                     /translation="MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRIL
                     EAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKT
                     LKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG"
     gene            complement(3657..4361)
                     /gene="sfsA"
                     /locus_tag="OQQ19_003646"
     CDS             complement(3657..4361)
                     /gene="sfsA"
                     /locus_tag="OQQ19_003646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HCS1805121.1"
                     /translation="MEFSPLLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGC
                     ATRGDTVWYSTSDNTKRKYPHTWELTQSQSGAFICVNTLWANRLTKEAILNESISELS
                     GYSSLKSEVKYGAERSRIDFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKH
                     LRELMNVAAEGQRAVIFFAVLHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAE
                     ISAEGMALKKSLPVTL"
     gene            complement(4376..4906)
                     /gene="thpR"
                     /locus_tag="OQQ19_003647"
     CDS             complement(4376..4906)
                     /gene="thpR"
                     /locus_tag="OQQ19_003647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414689.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HCS1805122.1"
                     /translation="MSEPQRLFFAIDLPAEIREQIIHWRATHFPPEAGRPVAADNLHL
                     TLAFLGEVSAEKEKALSLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQL
                     ANMLRSQAARSGCFQSNRPFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFA
                     RGRTRYTPLKRWALMQ"
     gene            4980..7409
                     /gene="hrpB"
                     /locus_tag="OQQ19_003648"
     CDS             4980..7409
                     /gene="hrpB"
                     /locus_tag="OQQ19_003648"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase HrpB"
                     /protein_id="HCS1805123.1"
                     /translation="MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH
                     PGINGKIILLEPRRLAARNVAQRLEELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEG
                     VLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD
                     NDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLF
                     LPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAE
                     TSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGICLH
                     LIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPTVNLLAAKRL
                     LQMLGALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG
                     NSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDG
                     RYQLANGMGAMLDADDALSRHEWLIAPLLLQGSASPDARILLALPVDIDELVQRCPQL
                     VQQSDTVEWDDAQGTLKAWRRLQIGLLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVL
                     NWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLATLETWLLPHMTGVHSLRGLKSLD
                     IYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATN
                     PTIAQGRVPLVLELLSPAQSPLQITRDLSAFWKGAYREVQKEMKGRYPKHVWPDDPAN
                     TAPTRRTKKYS"
BASE COUNT         1709 a         1924 c         2085 g         1753 t
ORIGIN      
        1 tgggattgat atttatctgc gggaatttat attatgtttc tgcaaaaatg tttaaactaa
       61 aatttttatt aaggaaagag aggatgtatg attttcagaa aatatttata ttcgtaatat
      121 aaataaatta ccatttgctt aattcgtcaa atgctcttgt atgtaagact tcacgcaacg
      181 tctccccatc aggaaacgcc agctccggtg caatctcaaa cagcggccac agcataaatc
      241 cacgattctt catatcgtag tgcggaacgg tcaggcgttc ggtatttatc acttcattac
      301 caaacagcat gatatcgaga tccagcgtgc gtggtcccca gcgttcagct ttacgaacac
      361 gatcctgttg cagttctatg cgctgtgtat ggttgagtaa ctcttccggg gcgagcgaag
      421 tttcaagcgc cacggcggcg ttgaggtaat cgggttgatc ttgcggcccc agcggtggag
      481 tgcggtaaaa cgaagaaacg gcaagaatgt ggctttcagg gatatcgcct aatgctttca
      541 gggcagcatt gacctgctcc agcggagagg ccagattgct gcctatggca atatacgcca
      601 ctgtcatgcg gtaccctcac gacgcggtgc gcgtttgcgt ggacgacgag tacggcgacg
      661 cggtgacggc tcttcatcca actcgttaag catccctttt tgatctggtg gcgcggaaac
      721 ctggaactca ccccaccatt tcaccagacg ctgcagttca gcgttacgtt caacttcagc
      781 tcgcaaggcc aacaggtcat aagccgcacg gaacttagga tgctccagca gtttccatgc
      841 gcgtttaccc tgacgacggg acatacgcaa ctgcaactgc cagatatcgc gggttaacgt
      901 cgtcagacgt ttcgggattg ccagtgaacg gcaggcttcg tccagcacgt cgttcatcgc
      961 cagcgcgaaa gcgtcgtgat aggtcaggcc gctttcctgg gcgatcttct gtgccgtctc
     1021 cagcagtggg taccagaaca tggcggcaaa caagaacgcc gggttcacgc gcatatcgtt
     1081 atggatacgc gtatcggtat tcttcagcac ctgttcaatg atccgctcca tcgggctgtc
     1141 gccattttcc gtgaagtagc gggtaatggt cgggaacagc ggctggaaca gatgatattc
     1201 acacaacagc ttataggttt cgtaaccgta gcccgcttgt agcagtttaa gcgattcttc
     1261 aaacaggcgt gccggtggga tatcgttcag cagggtagcg aggcgaggga tcggttctgc
     1321 ggtttccggg ctgatgcgca tacccaattt ggcggcaaaa cgtaccgcgc gcagcatacg
     1381 taccggatct tcacggtagc gcgtttccgg gttaccaatc agacggataa cgccgtcctt
     1441 cagatccttc atgccgccaa cgtaatcacg gacggtaaaa tccgctacgc tgtaatacag
     1501 gctgttgata gtgaaatcgc ggcgctgggc gtcttcttcg atggagccga aaatgttgtc
     1561 gcgcagcaac atgccgtttt gcccgcgttg ggaggtcgtg cggtcgctga cgttaccttc
     1621 gtggtgtcca cggaaggttg caacttcgat aatctccggg ccaaacatca catgagccag
     1681 acggaaacgg cgacccacaa ggcggcagtt acggaacagt ttgcgcacct gctcaggcgt
     1741 ggcgttagtg gttacgtcaa aatctttcgg ctttttgcca agtaacaggt cgcgcacgcc
     1801 gccgccaacc agccaggctt cgtatcccgc tttattgagc ctgtacatta ccttcagggc
     1861 attttcactg atatctttgc gggaaatagc atgctgctca cgcgggatca ccgtcacctg
     1921 tggacgggcg actgcctgtt cagcctcgct ttcctcgcgg cttagcacct tgcggcaaaa
     1981 attagcgact cgggtaaaaa tagtacacct cggtagtgtc aaacatcatt caggacaaaa
     2041 aaatagcggc taatcatagc tcagcatgac gcatttgaga atgttgaatt tacaattgcc
     2101 gactcgggca cggcggtcag cgtccagttt ttgacggctg actgaaggat ttgctcgacg
     2161 ctgaaatcct gccagtgtgc ttctacctgc tgccccagaa attgaagtgc cgtgattagt
     2221 accgggcgtg gatcgccttt cggcaacgca ggcgcatgat tctgcttgga aagtttagcg
     2281 ccttgtggat taagcgccag cggcagatga atgtaatctg gcactttcca gccaaaaagc
     2341 tggtacagcg agatttgcct tactgttggt tcaatcagat cagccccacg cactatttct
     2401 gtaacgccct ggaaatgatc atcaaccaca acagccaggt tgtaggcgaa caacccatca
     2461 cggcgatgaa tgataaaatc ttcccgtgcc agtttttcgt cggcgtgaat aatgccgcgc
     2521 agctggtcag taaattgcgt gaccggatgc tgctggcgga tacgcactgc ggcgttgtct
     2581 ggtccatgat gcaacacccg gcaatgaccg tcgtaaatac cgacaatgct ttgaatacgc
     2641 gcacgcgtac aggtgcagta ataacttagt ccttgttcat gtaaccaggc gagtgcttca
     2701 cgataggcgt cgtgacgttg cgattgccag agaacatcgc cgtcccagtg cagaccgtaa
     2761 tgttccagct ggcgcaggat agtttctgcg gcaccgggaa cttcacgagg cgggtcgata
     2821 tcttctatgc gtaccagcca gcgaccttgc cgggcgcgag cctgcaaata gctgccgagc
     2881 gcggcgatca gagagccaaa atgaagctcg ccggaaggag agggggcgaa gcggccaata
     2941 tactgtgtgt ctgtcatctc tttgaacaaa aaataaggcg ggagcatttc ccgcctgtgg
     3001 taaacgtgat ggaacggctg taattagcca gccatctgtt tttcgcgaat ttcagccagc
     3061 gttttgcagt cgatgcacag atcggctgtc gggcgcgctt ccagacggcg aataccaatt
     3121 tcaacaccgc aggattcgca gtagccgaaa tcttcgtctt ccactttttt cagcgtcttc
     3181 tcgatctttt tgatcagctt acgctcgcga tcgcggttac gcagttcgag gctgaactct
     3241 tcttcctggg ctgcacggtc taccgggtcc gggaagttgg ctgcttcatc ctgcatatgt
     3301 gtaacggtgc gatcgacttc atccctgagt tgattacgcc atgcttccag aatacgacgg
     3361 aagtgcgcca gctgggcttc attcatatac tcttcgcccg gcttctcctg atatggttcc
     3421 accccagcga tggcgagaat actcagggac gatgttttac ggttttgccc ttcttgcatg
     3481 ttgcttctcc ttaacacgca ctatcgatcc ccatgttcgg gggaaaaatg aggccgctat
     3541 aaatagcaga tgcttttccg gatagcaatt atctaaacgt aacacttgac aactgtgtga
     3601 ggaaaagcgt atttgcgcac gcgaccagaa tgtaaattaa ccagttactt actttactac
     3661 aatgtaaccg gcagtgattt tttaagagcc atgccttcag cagaaatttc cgctttgtaa
     3721 gccagaattt ctacccccct ctgttgagct tctgacaata gttgcgcgta tttctcatcg
     3781 atgtggcgcg cgggtgaaaa ccgtgtaatg gctgaatgca gcacggcgaa aaagataacc
     3841 gcacgctggc cttcagccgc tacgttcatc aactcccgaa ggtgtttctg acctcgttca
     3901 gtgaccgcat cgggaaaata tccctgttcg ttctccgcta acgtaaccga tttcacttca
     3961 atatagcagt ctggacgcga atccgcctgc aacataaagt caatacggct gcgttctgcg
     4021 ccatatttta cttcgctttt cagcgagcta tagcctgaca gttctgaaat tgattcatta
     4081 aggatagcct ctttcgtcaa cctgttagcc caaagcgtat tgacgcaaat aaatgcgccg
     4141 ctctggcttt gagttagttc ccaggtgtgt gggtatttcc gtttggtgtt gtctgaagtc
     4201 gaataccaga cggtatcgcc acgcgttgca caaccggtca tcgcacccgt attcgggcag
     4261 tgtagcgtta attcgcgacc atcgggtgtg atcacatcgg ctaaaaaacg tttgtaacgc
     4321 tgaattagcg tcgcgcgctg tagaagggga gagaattcca ttgcgacaat ccttgttatt
     4381 gcattagcgc ccagcgtttt agcggcgtgt agcgtgtgcg tccacgggca aacgaggagg
     4441 cgtaaagggt gaactccgtc accgcataag accagttaaa acctggcggc gggattgtca
     4501 ccgcctcgct ggcgtcgcgc aataaggtaa tatgtggatg aaacggacga ttgctttgaa
     4561 aacaaccgct gcgggcagcc tgtgaacgga gcatattcgc cagctggatt aagccgcgtg
     4621 gcggctgacg catccctaac cacaccacac gcgaacgcag ccattgtccg gcgtcatcaa
     4681 gcgtgagtgt gaaaccaggt tgacgaatcc gtccggctaa aagagaaagc gccttctctt
     4741 tctcggcgct cacttcgcct aaaaatgcca gagtcagatg caaattatcg gcggcgaccg
     4801 gacgtcccgc ctcaggtggg aagtgtgtgg cgcgccagtg gataatctgt tcgcggattt
     4861 ctgcaggtaa gtcgatagca aagaacagac gttgcggttc agacatgtga ggcactcggt
     4921 tatgaattac cgcgatgcta caatgtggcg cgaagaatgt taaccctctg gagcgttttg
     4981 tgtcgtcgtt gcccgttgct gccgttttac ctgaattact taccgctctc gattgtgcgc
     5041 cgcaggtatt attaagtgcg ccgaccgggg ccgggaaatc aacctggctg ccgctgcaac
     5101 tgctggcgca tcccggcatt aacgggaaaa ttatcctgct ggagccgcgt cgtctggcgg
     5161 cgcgtaacgt cgcgcaacgg ctggaggagc tgcttaacga aaagccaggc gataccgttg
     5221 gctaccggat gcgtgcgcaa aactgcgtcg ggccgaatac ccgcctggaa gtagttaccg
     5281 aaggcgtgct gacgcggatg atccagcgtg acccggagtt gagcggtgtt ggattggtga
     5341 tccttgatga atttcatgag cgtagcttgc aggcggattt ggcgttggcg ctgttactcg
     5401 atgtgcaaca aggtctgcgt gatgacctta aactgctaat tatgtcggct acgctggaca
     5461 acgaccgctt gcagcaaatg ctgccagaag cgcccgtcgt catctcagaa gggcgctcgt
     5521 ttccggttga acgccgttat ttaccgctgc ccgcgcatca gcgttttgac gatgccgttg
     5581 cggtagccac cgctgaaatg ctgcgtcagg aaagcggatc attactgtta tttttacctg
     5641 gcgtcggaga aattcagcgt gtgcaggaac aactggcttc gcgcatcggc agtgatgtat
     5701 tgctctgccc gctgtatggc gcgttgtcgc tgaacgatca gcgaaaagcg atcctcccgg
     5761 caccgcaagg gatgcgcaaa gtggtgctgg cgaccaatat tgctgaaacc agtttaacca
     5821 tcgaaggtat tcgtctggtg gtggattgtg cccaggagcg tgtggcgcgt tttgatccgc
     5881 gcacggggct aacgcgactg attactcaac gcgttagcca ggcatccatg acgcagcgtg
     5941 ccgggcgcgc cgggcgtctg gagccgggta tctgcctgca tctaatcgcc aaagaacaag
     6001 cagaacgcgc tgccgcgcaa agtgaaccgg aaatcttaca aagcgatctt tccggtttgc
     6061 tgatggaatt actgcaatgg ggatgcagcg atccggcgca gatgagctgg ctggatcaac
     6121 cgccaacggt gaatctactg gccgcgaaac gcctgttaca aatgctgggg gcgctggagg
     6181 gtgaacggct tagtgcgcag gggcaaaaaa tggcagcgct gggtaacgat ccgcgtttag
     6241 cggcaatgct ggttagcgcg aagaacgacg acgaagctgc taccgcggca aaaattgccg
     6301 ccattctcga agagccgcca cggatgggca atagtgacct gggcgtggcg ttttcgcgca
     6361 atcaaccagc ttggcagcaa cgtagtcagc aactgttaaa acgcttaaac gtacgtggcg
     6421 gtgaggcaga cagttcgctt atcgcgccgc tacttgccgg ggcgtttgcc gatcgcattg
     6481 ctcgtcgccg tgggcaagat ggacgctatc aactggcaaa cggcatggga gcgatgctcg
     6541 atgccgacga cgcgctaagc cgccacgaat ggttgatcgc accgttatta ttgcagggca
     6601 gcgcctcgcc ggatgcgcgg attttactgg cgctgccggt cgatattgat gagttagtac
     6661 aacgctgccc gcagctggta cagcagtctg acactgtgga gtgggatgac gcgcaaggta
     6721 cgctgaaagc ctggcgtcgg ctgcaaatcg gtctgctgac ggtgaaagtg cagccgctgg
     6781 cgaaaccctc ggaagacgag ttgcatcagg cgatgcttaa tggcatccgt gataaaggtt
     6841 taagcgtgct caactggacg gcggaagcgg aacagctacg cttgcgtttg ttatgcgccg
     6901 caaagtggtt gccggaatat gactggccag cggttgatga tgaaagttta ttggcgacgc
     6961 tggaaacgtg gctgctgcca catatgactg gcgtacattc actacgcggc ctgaaatcac
     7021 tcgacattta tcaggcacta cgcggattac ttgattgggg aatgcagcaa cgtctggata
     7081 gtgaattgcc tgcgcattac actgtgccga cgggaagccg gatcgccatt cgttatcatg
     7141 aagataaccc gcccgcgctg gcggtgagaa tgcaagagat gtttggcgag gccaccaatc
     7201 cgacgatcgc ccaggggcgc gtgccgctgg tgctggagtt gctttcacct gcccaaagtc
     7261 cattacaaat cacacgagat ttgagcgcct tctggaaagg agcgtaccgt gaggtgcaaa
     7321 aagagatgaa agggcgttat cccaaacatg tctggccgga cgacccggca aatactgcac
     7381 cgacgcgacg gacgaaaaag tattcgtaag gttggttttc tccctctccc tgtgggagag
     7441 ggccggggtg agggcatcag cgcgcacgtt c
//
LOCUS       DAJVSY010000181         7435 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.183, whole genome shotgun sequence.
ACCESSION   DAJVSY010000181 DAJVSY010000000
VERSION     DAJVSY010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7435
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.183"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            167..274
                     /locus_tag="OQQ19_003649"
     CDS             167..274
                     /locus_tag="OQQ19_003649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588455.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805124.1"
                     /translation="MPTKRFDKKHWKMVVVLLAICGAMLLLRWAAMIWG"
     gene            complement(327..1085)
                     /locus_tag="OQQ19_003650"
     CDS             complement(327..1085)
                     /locus_tag="OQQ19_003650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiY family protein"
                     /protein_id="HCS1805125.1"
                     /translation="MKLLKTVPAIVMLAGGMFASLNAAADDSVFTVMDDPASAKKPFE
                     GNLNAGYLAQSGNTKSSSLTADTTMTWYGQTTAWSLWGNASNTSSNDERSSEKYAAGG
                     RSRFNLTDYDYLFGQASWLTDRYNGYRERDVLTAGYGRQFLNGPVHSFRFEFGPGVRY
                     DKYTDNASETQPLGYASGAYAWQLTDNAKFTQGVSVFGAEDTTLNSESALNVAINEHF
                     GLKVTYNVTWNSEPPESAPEHTDRRTTLSLGYSM"
     gene            1372..2301
                     /gene="pfkB"
                     /locus_tag="OQQ19_003651"
     CDS             1372..2301
                     /gene="pfkB"
                     /locus_tag="OQQ19_003651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416237.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase II"
                     /protein_id="HCS1805126.1"
                     /translation="MVRIYTLTLAPSLDSATITPQIYPEGKLRCTAPVFEPGGGGINV
                     ARAIAHLGGSATAIFPAGGATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGE
                     QYRFVMPGAALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISASQKQG
                     IRCIVDSSGEALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKA
                     KRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMV
                     RFGVAAGSAATLNQGTRLCSHDDTQKIYAYLSR"
     gene            2402..2692
                     /gene="ghoS"
                     /locus_tag="OQQ19_003652"
     CDS             2402..2692
                     /gene="ghoS"
                     /locus_tag="OQQ19_003652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type V toxin-antitoxin system endoribonuclease
                     antitoxin GhoS"
                     /protein_id="HCS1805127.1"
                     /translation="MASGDLVRYVITVMLHEDTLTEINELNNYLTRDGFLLTMTDDEG
                     NIHELGTNTFGLISTQSEEEIRELVSGLTQSATGKDPEITITTWEEWNSNRK"
     gene            2798..3658
                     /locus_tag="OQQ19_003653"
     CDS             2798..3658
                     /locus_tag="OQQ19_003653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructosamine kinase family protein"
                     /protein_id="HCS1805128.1"
                     /translation="MWQAISRLLSEQLGEGEIELRNELPGGEVHAAWHLRYAGHDFFV
                     KCDERELLPGFTAEADQLELLSRSKTVTVPKVWAVGADRDYSFLVMDYLPPRPLDAHS
                     AFILGQQIARLHQWSDQPQFGLDFDNSLSTTPQPNTWQRRWSTFFAEQRIGWQLELAA
                     EKGIAFGNIDAIVEHIQQRLASHQPQPSLLHGDLWSGNCALGPDGPYIFDPACYWGDR
                     ECDLAMLPLHTEQPPQIYDGYQSVSPLPADFLERQPVYQLYTLLNRARLFGGQHLVIA
                     QQSLDRLLAA"
     gene            complement(3699..4235)
                     /locus_tag="OQQ19_003654"
     CDS             complement(3699..4235)
                     /locus_tag="OQQ19_003654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YniB family protein"
                     /protein_id="HCS1805129.1"
                     /translation="MTYQQAGHIAVLKRILGWVIFIPALISTLISLLKFMNTRQENQE
                     GINAVMLDFTHVMIDMMQANTPFLNLFWYNSPTPNFNGGVNVMFWVIFILIFVGLALQ
                     DSGARMSRQARFLREGVEDQLILEKAKGEEGLTREQIESRIVVPHHTIFLQFFSLYIL
                     PVICIAAGYVFFSLLGFI"
     gene            4382..5050
                     /gene="hxpB"
                     /locus_tag="OQQ19_003655"
     CDS             4382..5050
                     /gene="hxpB"
                     /locus_tag="OQQ19_003655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpB"
                     /protein_id="HCS1805130.1"
                     /translation="MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRN
                     ELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVA
                     LCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAK
                     LGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLSSLTELTAK
                     DLLG"
     gene            5213..5803
                     /locus_tag="OQQ19_003656"
     CDS             5213..5803
                     /locus_tag="OQQ19_003656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707386.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS1805131.1"
                     /translation="MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLL
                     PDIDHPKSFLGQRLKWISKPIARAFGHRGFTHSLLAVFALLATFYLKVPEGWFIPADA
                     LQGMVLGYLSHILADMLTPAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSV
                     WMPHSLPENSAVRWSSQIINTLQIQFHRLIKHQVEY"
     gene            5936..7327
                     /gene="tcyP"
                     /locus_tag="OQQ19_003657"
     CDS             5936..7327
                     /gene="tcyP"
                     /locus_tag="OQQ19_003657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine/sulfocysteine:cation symporter"
                     /protein_id="HCS1805132.1"
                     /translation="MNFPLIANIVVFVVLLFALAQTRHKQWSLAKKVLVGLVMGVVFG
                     LALHTIYGSDSQVLKDSVQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLG
                     KISFLTIGTLLFTTLIAALVGVLVTNLFGLTAEGLVQGGAETARLNAIESNYVGKVSD
                     LSVPQLVLSFIPKNPFADLTGANPTSIISVVIFAAFLGVAALKLLKDDAPKGERVLAA
                     IDTLQSWVMKLVRLVMQLTPYGVLALMTKVVAGSNLQDIIKLGSFVVASYLGLLIMFA
                     VHGILLGINGVSPLKYFRKVWPVLTFAFTSRSSAASIPLNVEAQTRRLGVPESIASFA
                     ASFGATIGQNGCAGLYPAMLAVMVAPTVGINPLDPMWIATLVGIVTVSSAGVAGVGGG
                     ATFAALIVLPAMGLPVTLVALLISVEPLIDMGRTALNVSGSMTAGTLTSQWLKQTDKA
                     ILDSEDDAELAHR"
BASE COUNT         1866 a         1809 c         1838 g         1922 t
ORIGIN      
        1 attttcgata tatatgttga tgcataatat tattttttca taaaacgcag aaacagtgac
       61 caggtgtaca acgccaccca acggctgtaa taacaaaaaa tcccttgatg cccgtccctt
      121 ttgttacact ccgttatcac gcacaagaga tatgcaggac actggtatgc cgactaaacg
      181 ctttgataaa aaacactgga agatggtggt ggtgctactg gcaatctgtg gcgctatgtt
      241 gttgctacgt tgggcagcaa tgatttgggg ctgagcagtg acaaacgaag acagccagac
      301 cgcataacac ggtccggcag ataattttac atgctgtagc ccagcgataa ggttgtccga
      361 cggtcggtat gttccggtgc agactctgga ggttcagagt tccatgtaac gttgtaagtc
      421 accttcagtc caaaatgttc attaatagca acatttaatg cgctttcgga gttcagcgtt
      481 gtgtcttccg cgccaaagac cgaaacaccc tgcgtaaatt tagcgttgtc agtcaactgc
      541 catgcataag ccccggaggc atagcccagc ggctgagttt cactggcatt gtcggtatat
      601 ttgtcgtaac gcacacctgg accgaattca aagcggaaac tgtgtaccgg gccattcaaa
      661 aactgacgac cataacccgc ggtcaacaca tcgcgctctc gatagccgtt ataacggtct
      721 gtcagccagc ttgcctgacc aaataaatag tcataatcag ttaaattaaa gcggctacgc
      781 ccgcccgccg catatttttc tgaagaacgc tcatcattag aagaagtatt actggcgttc
      841 ccccacagcg accaggcagt ggtttgtcca taccaggtca tggtggtgtc agccgtaagt
      901 gaggagcttt tcgtattgcc tgattgtgca agatatcctg cgttcagatt accttcgaaa
      961 ggttttttag cgctggcagg atcgtccatg acagtaaaaa cggaatcatc ggcagctgca
     1021 ttcagtgacg caaacatgcc ccccgccaac ataacgatgg caggaactgt cttcaaaagc
     1081 ttcatttatc aagagtccgt acaacaaaaa aagagaccat cgcggtcccg gaaactttct
     1141 taaggatcaa agattagcgt ccctggaaag gtaacgaatt ataaaaaggc gcgaataact
     1201 tagcaatgta ttcttatttc attttttgaa taagcatgtg gcgaaaacag atttttattt
     1261 atatatattt atctgcaaaa ttttaaataa agctccaata aatcatattg ttaatttctt
     1321 cactttccgc tgattcggtg ccagactgaa atcagcctat aggaggaaat gatggtacgt
     1381 atctatacgt tgacacttgc gccctctctc gatagcgcaa caattacccc gcaaatttat
     1441 cccgaaggaa aactgcgctg taccgcaccg gtgttcgaac ccgggggcgg cggcatcaac
     1501 gtcgcccgcg ccattgccca tcttggaggc agtgccacag cgatcttccc ggcgggtggc
     1561 gcgaccggcg aacacctggt ttcactgttg gcggatgaaa atgtccccgt cgctactgta
     1621 gaagccaaag actggacccg gcagaattta catgtacatg tggaagcaag cggtgagcag
     1681 tatcgttttg ttatgccagg cgcggcatta aatgaagatg agtttcgcca gcttgaagag
     1741 caagttctgg aaattgaatc cggggccatc ctagtcataa gcggaagcct gccgccaggt
     1801 gtgaagctgg aaaaattaac ccaactgatt tccgcttcgc aaaaacaagg gatccgctgc
     1861 atcgtcgaca gttctggcga agcgttaagt gcagcactgg caattggtaa catcgagttg
     1921 gttaagccta accaaaaaga actcagtgcg ctggtgaatc gcgaactcac ccagccggac
     1981 gatgtccgca aagccgcgca ggaaatcgtt aatagcggca aggccaaacg ggttgtcgtt
     2041 tcccttggtc cacaaggagc gctgggtgtt gatagtgaaa actgcattca ggtggtgcca
     2101 ccaccggtga aaagccagag taccgttggc gctggtgaca gcatggtcgg cgcgatgaca
     2161 ctgaaactgg cagaaaatgc ctctcttgaa gagatggtcc gttttggcgt agctgcgggg
     2221 agtgcagcca cactcaatca gggaacacgt ctgtgctccc atgacgatac gcaaaaaatt
     2281 tacgcttacc tttcccgcta acaaaaacat tcccccagca ttgggggaat caccaccaac
     2341 ctgtcggcaa cgcgtttctc cgactatgct caaaagtcat gtgataacaa aggggtgaac
     2401 tatggccagt ggcgatcttg tccgttatgt cataaccgtc atgttgcatg aggatacatt
     2461 gactgaaatt aacgagttga ataattacct gactcgcgac ggttttttgc tcaccatgac
     2521 ggatgatgag ggaaatatcc atgagctggg gactaacact tttggactta tcagtaccca
     2581 aagtgaagaa gaaattagag aactggtttc ggggcttacc caaagtgcaa ccggcaaaga
     2641 tcctgaaatc accatcacga cctgggagga atggaatagc aacagaaaat aaatggtttt
     2701 tgggcaataa tcagtctgtg gtgtgcgtta gctcgtgttt ttacaccgca ttcttgcgct
     2761 aaccttatga tctggcagac aacatgggag agacatcatg tggcaggcaa tcagtcgtct
     2821 tttgagcgag cagttaggtg aaggcgaaat cgaactgcgt aatgaactgc ctggcggaga
     2881 agtccatgcc gcatggcatt tgcgctatgc aggacatgac tttttcgtca aatgtgatga
     2941 aagggaactg cttcccggtt ttaccgccga agccgaccaa ctggagttac tgtcgcgtag
     3001 taaaaccgtc accgtgccta aggtttgggc agtaggcgct gaccgtgact acagttttct
     3061 ggtgatggat tatctcccac ctcgtccgct ggatgcgcat agcgcattta ttcttggtca
     3121 gcaaattgcg cgtttacatc aatggagtga ccaaccacaa tttggcctcg attttgataa
     3181 ctcgctctcc acaactccac agcccaacac ctggcaacgt cgctggtcaa cgttttttgc
     3241 tgaacaacgg attggctggc agttggaact ggcagcagag aaagggatcg ctttcggcaa
     3301 tatcgacgcc atcgtcgagc atattcagca gcgtctggcc tcgcatcaac cgcagccttc
     3361 tctgttgcac ggcgatttat ggtccggcaa ctgtgcgctg ggtccggatg gcccgtacat
     3421 tttcgaccct gcctgctact ggggtgaccg agagtgcgac ctggcgatgt taccgctgca
     3481 tactgaacag ccgccacaaa tctatgacgg ctatcagtca gtatccccgc tacctgccga
     3541 tttccttgaa cgtcaaccgg tttaccaact ctacacgctg ttaaatcgtg caaggttatt
     3601 tggcggtcag catttggtta ttgctcagca gtcactggat agattattag cagcatgata
     3661 tgggttgaag ataatggccg ctgtgtgcgg ccttttgatt aaataaaccc aagcagagaa
     3721 aagaacacat aacctgcagc aatacaaata accggcagga tatacagtga gaaaaactgc
     3781 aggaaaatag tatggtgcgg aacaacaata cgggactcaa tttgttcacg cgttagcccc
     3841 tcttcccctt tggctttttc cagaatgagt tgatcttcaa caccttcccg caagaagcgc
     3901 gcctggcgac tcattcgggc accggaatcc tgcaacgcca gtccgacaaa aatcaggatg
     3961 aaaatcaccc agaacataac gttcacgcca ccattaaaat tgggcgtcgg ggagttatac
     4021 cagaacagat tcaaaaaagg cgtattcgcc tgcatcatat cgatcatgac atgagtaaag
     4081 tcgagcatga ccgcattaat gccttcctgg ttttcctgcc gggtattcat aaatttcagc
     4141 aaagaaatca atgtagagat caatgcaggt ataaaaatca cccaacccaa aatccttttc
     4201 aaaacagcaa tgtgtccagc ttgttgatac gtcatgagtt ctccttgatt aagacgcgtc
     4261 gtttcactta gtttacctgt agatatctgt tttcgcccat tctttaaagg cgatatgata
     4321 ggcgcttaat cataagcacg gcttaatacc ttacacataa tgctctaaag gagaggttgt
     4381 aatgtcaacc ccgcgtcaga ttcttgctgc aatttttgat atggatggat tacttatcga
     4441 ctcagaacct ttatgggatc gagccgaact ggatgtgatg gcaagcctgg gggtggatat
     4501 ctcccgtcgt aacgagctgc cggacacctt aggtttacgc atcgatatgg tggtcgatct
     4561 ttggtacgcc cggcaaccgt ggaatgggcc aagccgtcag gaagtagtag aacgggttat
     4621 tgcccgtgcc atttcactgg ttgaagagac acgtccatta ttaccaggcg tgcgcgaagc
     4681 tgttgcgtta tgcaaagaac aaggtttatt ggtgggactg gcctccgcgt caccactaca
     4741 tatgctggaa aaagtgttga ccatgtttga cttacgcgac agtttcgatg ccctcgcctc
     4801 ggctgaaaaa ctgccttaca gcaagccgca tccgcaagta tatctcgact gcgcagcaaa
     4861 actgggcgtt gacccactga cctgcgtggc gctggaagac tcggtaaatg gcatgatcgc
     4921 ttctaaagca gcccgcatgc gttccatcgt cgttcctgcg ccagaagcgc aaaatgatcc
     4981 acgttttgta ttagcaaacg tcaaactctc atcgctgaca gaactcaccg caaaagacct
     5041 tctcggttaa tgaccagggg cagtgatcac gctgcccctg gttctttatc tgaatttgca
     5101 ttcaactgac ggattaatcg tcaatttaag agaaagagtt acaccgtcac cacttccgtg
     5161 cactgtataa aaatcctata ctgtacgtat cgacagttta gtgagtttta tcatgacggc
     5221 ggaaggtcac cttctctttt ctattgcttg tgcggtattt gccaaaaatg ccgagctgac
     5281 gcccgtgctg gcacagggtg actggtggca tattgtccct tccgcaatcc tgacgtgttt
     5341 gttaccggac atcgatcacc caaagtcgtt tcttgggcag cgattaaaat ggatatcaaa
     5401 accgatcgcc cgcgcttttg ggcatcgtgg ttttacccac agtctgctgg cggtatttgc
     5461 gctgctggca accttttacc ttaaggttcc ggaaggctgg ttcattccgg ctgatgcgct
     5521 acaaggaatg gtgctgggtt atttgagcca catacttgcc gatatgctga cacccgccgg
     5581 tgttcccctg ctctggccat gccgctggcg tttccgcttg cctatcctag ttccccaaaa
     5641 gggcaaccaa ctggaacgtt ttatctgtat ggcattattt gtctggtcgg tatggatgcc
     5701 ccattcatta cccgagaaca gcgctgttcg ttggtcatcg caaataatca ataccttgca
     5761 gatccagttt catcggctta ttaagcatca ggttgaatac taaaaagaca aaaatcacct
     5821 ttctggaata agcaattcca tttgaatata agagccagct cacagttctg ttaatcttgc
     5881 gccaacacta tgactgctac gcagtgatag aaataataag atcaggagaa cggggatgaa
     5941 ctttccatta attgcgaaca tcgtggtgtt cgttgtactg ctgtttgcgc tggctcagac
     6001 ccgccataaa cagtggagtc tggcgaaaaa agtgctggtg ggtctggtga tgggtgtggt
     6061 ttttggcctt gccctgcata ccatttatgg ttctgacagc caggtactta aagattctgt
     6121 acagtggttt aacatcgttg gtaacggcta tgttcaactg ctgcaaatga tcgttatgcc
     6181 gttagtcttc gcctctattc tgagcgcggt tgcccgtctg cataacgcat ctcagttagg
     6241 caaaatcagt tttctgacca tcggtacgct tttgtttacc acgctgattg cggcgctggt
     6301 cggtgtgctg gtcaccaacc tgtttggttt gacggctgaa ggtctggttc agggtggtgc
     6361 agaaactgca cgtctgaacg ccattgaaag taactatgtt ggtaaagtct ctgatctgag
     6421 cgttccgcag ctggtcttgt cctttatccc gaaaaacccg tttgccgatc ttaccggagc
     6481 caatccgacg tcaattatca gcgtggtaat ttttgccgca ttcctcggcg tagctgcatt
     6541 gaaactgctg aaggatgatg cgccgaaagg tgaacgcgtc ttagccgcta tcgataccct
     6601 acaaagctgg gtgatgaaac tggttcgcct tgtcatgcag ttgacccctt acggcgttct
     6661 ggctctaatg accaaagtgg ttgcaggttc taacttgcaa gacatcatca aactgggaag
     6721 tttcgttgtc gcgtcctacc tcggtctgct gattatgttt gcagtgcatg gcattctgct
     6781 gggcattaat ggcgtgagtc cgctgaagta cttccgtaag gtatggcctg tgctgacgtt
     6841 tgcctttacc agccgttcca gtgctgcgtc tatcccactg aatgtggaag cacaaacgcg
     6901 tcgtctgggc gttcctgaat ccatcgccag tttcgccgcc tctttcggtg caaccattgg
     6961 tcagaacggc tgcgccggtt tgtatccggc aatgctggcg gtgatggttg cgcctacggt
     7021 tggcattaac ccgctggacc cgatgtggat tgcgacgctg gtcggtattg ttaccgttag
     7081 ttccgcaggc gttgccggtg tcggtggtgg tgcaactttc gccgcactga ttgtgctgcc
     7141 tgcgatgggc ctgccagtaa ccctggtggc gctgttaatc tccgttgaac cgcttatcga
     7201 catgggccgt acggcgctaa acgttagtgg ctcgatgaca gctggcacgc tgaccagcca
     7261 gtggctgaag caaaccgata aagccattct ggatagcgaa gacgacgccg aactggcaca
     7321 ccgttaattc ttatgctggc aatggtccgt tttgtatagg ggccgttgct ttacttttta
     7381 aatgttccat cgcggcgatg catactgact catatttaaa cagatcgtca gcgaa
//
LOCUS       DAJVSY010000182         7409 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.184, whole genome shotgun sequence.
ACCESSION   DAJVSY010000182 DAJVSY010000000
VERSION     DAJVSY010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7409
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.184"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            1..1459
                     /locus_tag="OQQ19_003658"
                     /pseudo
     CDS             1..1459
                     /locus_tag="OQQ19_003658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709462.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
     gene            1470..2543
                     /locus_tag="OQQ19_003659"
     CDS             1470..2543
                     /locus_tag="OQQ19_003659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001685709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1805133.1"
                     /translation="MNKYIKQWCFAVFMLSLSSVALAAPKGICTPDNGVFHSTLDFSG
                     YLITANENKVGTTFNTTVTNGSSYPGRCHCDTGNVGEFPYIYYTSKINQALTYAGVHS
                     NINYYDLNPNLDVGIAIDILGVGYVNAPFEYHANNPSGNTKYNCNRIEPLSISSGAKA
                     IVYFYIKKTFAGKLIIPETKIVTLYGTISRDTPVDYSQPMANVYIRGDITAPQSCEIN
                     NLQPVYFDFKEIPAADFSSVVGSAVITHKITKTVTIECENLGILNTDDISTSFYATEP
                     NTDNSMVVTSNSNVGIKIYDKNNKEIKVNGGELPTDMGKSTVYGEKLGSVTFSAAPAS
                     LTGARPAPGQFTATATITVEIVR"
     gene            2791..3831
                     /gene="pstS"
                     /locus_tag="OQQ19_003660"
     CDS             2791..3831
                     /gene="pstS"
                     /locus_tag="OQQ19_003660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HCS1805134.1"
                     /translation="MKVMRTTVATVVAATLSMSAFSVFAEASLTGAGATFPAPVYAKW
                     ADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIG
                     GVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLNPGLKLPSQNIAVVRR
                     ADGSGTSFVFTSYLAKVNEEWKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGY
                     VEYAYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADWSKTFAQDLTNQKGEDAWP
                     ITSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDLDYASLPDSVVEQVRAAWK
                     TNIKDSSGKPLY"
     gene            3918..4877
                     /gene="pstC"
                     /locus_tag="OQQ19_003661"
     CDS             3918..4877
                     /gene="pstC"
                     /locus_tag="OQQ19_003661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008806729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstC"
                     /protein_id="HCS1805135.1"
                     /translation="MAATKPAFNPPGKKGDIIFSVLVKLAALIVLLMLGGIIVSLIIS
                     SWPSIQKFGLAFLWTKEWDAPNDIYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTE
                     LAPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFAVYFQEPVGNIMSNIPIVGAL
                     FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRI
                     VLPFTKNGVIGGIMLGLGRALGETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFA
                     EAESGLHVAALMELGLILFVITFIVLAASKFMIMRLAKNEGAR"
     gene            4877..5767
                     /gene="pstA"
                     /locus_tag="OQQ19_003662"
     CDS             4877..5767
                     /gene="pstA"
                     /locus_tag="OQQ19_003662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HCS1805136.1"
                     /translation="MAMVEIQTTAALAESRRKMQARRRLKNRIALTLSMATMAFGLFW
                     LIWILMSTITRGIDGMSLALFTEMTPPPNTEGGGLANALAGSGLLILWATVFGTPLGI
                     MAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTIVVAQMEHFSGWAGVIAL
                     ALLQVPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGILLAI
                     ARIAGETAPLLFTALSNQFWSTDMMQPIANLPVTIFKFAMSPFAEWQQLAWAGVLIIT
                     LCVLLLNILARVVFAKNKHG"
     gene            5858..6631
                     /gene="pstB"
                     /locus_tag="OQQ19_003663"
     CDS             5858..6631
                     /gene="pstB"
                     /locus_tag="OQQ19_003663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000063125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HCS1805137.1"
                     /translation="MSMVETAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGP
                     SGCGKSTLLRTFNKMFELYPEQRAEGEILLDGDNILTNSQDIALLRAKVGMVFQKPTP
                     FPMSIYDNIAFGVRLFEKLSRADMDERVQWALTKAALWNETKDKLHQSGYSLSGGQQQ
                     RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARC
                     SDHTAFMYLGELIEFSNTDDLFTKPAKKQTEDYITGRYG"
     gene            6646..7371
                     /gene="phoU"
                     /locus_tag="OQQ19_003664"
     CDS             6646..7371
                     /gene="phoU"
                     /locus_tag="OQQ19_003664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HCS1805138.1"
                     /translation="MDSLNLNKHISGQFNAELESIRTQVMTMGGMVEQQLSDAITAMH
                     NQDSDLAKRVIEGDKNVNMMEVAIDEACVRIIAKRQPTASDLRLVMVISKTIAELERI
                     GDVADKICRTALEKFSQQHQPLLVSLESLGRHTIQMLHDVLDAFARMDIDEAVRIYRE
                     DKKVDQEYEGIVRQLMTYMMEDSRTIPSVLTALFCARSIERIGDRCQNICEFIFYYVK
                     GQDFRHVGGDELDKLLAGKDSDK"
BASE COUNT         1863 a         1717 c         1933 g         1896 t
ORIGIN      
        1 cagatgttga tgtcagcgtg ggtgaattgc gcgatgaaga cggatttaca ccggacgtcc
       61 ttcaggcgca aatacttcat ggtttttccc acgggatcac tttatatgga ggtatgcagg
      121 ctgctgaaaa ttatggttct gcagctctgg gtgtcggtaa agatcttggc gctttgggcg
      181 caatttcttt cgatgtgaca catgctcgtg cgaattttag ccatgatgat acagaaacgg
      241 gtcagtcata tcgctttctc tattcaaaac gatttgacga cacagacact agcttgcgcc
      301 tggttggcta tcgttactcc accgagggct actataccct caatgagtgg gcatcgcggc
      361 gcaacagccc tgaagacttt tgggaaacag gtaaccgacg tagtcgcgtg gagggaacgc
      421 taacgcagtc gttggggaga gattatggca atttatacct gacattaagc cggcaacaat
      481 actggcatac cgatgatgtc gaacgattaa tgcaatttgg ctacagcagt agctggaagc
      541 gtctctcgtg gaacgtctcc tggagttatt ccaatactgc cagacagggg acggggaaca
      601 accatgccag tgataacacc agtgagcaga tctacatgct ctctttatct gttcctttat
      661 cgggctggtg gggtaatagt tacgccacct attctgtttc gcaaaacgat aattccggta
      721 gctcacatca agcggtacgg cgctggaaag aaataacctt tcatggaatt taatgcagtc
      781 ctataacagt catgatgatg aggttggcgg taatatgtcc ctgacctatg atggctctta
      841 tggcacggtg aacggcagct ataactacag ccaaaattcc cagaggctga attatggtat
      901 cagaggggga attctggcac acagcgaagg ggtaacgtta agtcaggagt taggtgaaac
      961 tattgctctt gttaaagcac ctggggccgc cgggttagaa atagataata tgcgcggtgc
     1021 tgcgacggac tggcgcggct atacggtcaa gacacagcta aacccttatg atgaaaatcg
     1081 ggtagcaatc agcgataact atttctcgaa gtcgaatata gaacttgata ataccgtcgt
     1141 tacgatggtt cccacgcgtg gtgcagtggt taaagcggag tttgtgactc atgtgggtta
     1201 tcgcgttctc ttcagagtgt taaatgcaaa tggtaaaccg gtaccttttg gagccattgc
     1261 tgcgatacaa gatgcaagtt tggcagattc aggaattgtc ggtgaccgtg gcgaacttta
     1321 tctttctggt ctaccagaaa aaggacaggt tacgttatcc tggggagaaa acgcctcaac
     1381 aaaatgcatc ttcaattatt cactttcgac accagaaagt gagagcggat taattgaaca
     1441 gggtgtgaca tgtcattaaa aggattttta tgaacaagta tatcaaacag tggtgctttg
     1501 ctgtgtttat gctctcgtta agtagtgtag cacttgcagc tcctaaaggt atctgtaccc
     1561 ctgataatgg cgtatttcac agtacgcttg atttctcggg atatcttatt accgcgaacg
     1621 aaaataaggt tggaacgaca tttaacacca ctgtaactaa tggatcctca tatcctggac
     1681 gctgtcattg tgatactggt aacgtaggag aattccccta tatctattat acgtcaaaaa
     1741 taaaccaggc attaacttat gctggggttc actctaatat taattattat gatcttaatc
     1801 cgaaccttga tgttgggatt gctatagata ttcttggggt tgggtatgtg aatgcacctt
     1861 ttgaatatca tgctaacaac ccgtctggta atacaaagta caattgcaac cgcattgaac
     1921 ctttaagtat atctagtggg gctaaagcga tagtatattt ttatatcaag aagacatttg
     1981 caggaaaatt gattattcct gaaacaaaga tagtgacatt gtatggaaca attagccgtg
     2041 acaccccggt ggattactca cagccgatgg ctaatgttta tattcggggc gatattacag
     2101 ctccgcaaag ttgcgaaata aataatttac agccagttta ttttgatttt aaagaaatac
     2161 cagctgcaga tttttcatct gttgttggaa gtgcggtaat aacacataaa attactaaaa
     2221 cggtcactat tgagtgtgaa aacctgggga tactgaatac cgatgatatc agtacgtctt
     2281 tttatgctac cgaacccaat acggacaatt caatggtcgt aacttcaaac tctaacgtgg
     2341 ggataaaaat ttacgacaaa aataataagg aaatcaaagt gaacggtggt gagttgccaa
     2401 cagacatggg taaatcaaca gtgtatggtg aaaaattagg tagtgtaact ttttcagctg
     2461 ctcctgcgag ccttactgga gctcgcccag ccccggggca atttactgca acagcgacga
     2521 taactgttga gattgtgcgc taataggtct gacaacgatt gttcatcaca tcgttgtcat
     2581 ctcacccatt tctttatcac ttttaaatgc atcatgacaa aaagatgaca tgtgggattt
     2641 tcatcttcac atttaaaatc agtaagttat ttggtaattc ctttctgtca taaaaatgtc
     2701 atattcctta catataactg tcacctgttt gtcctatttt gcttctcgta gccaacaaac
     2761 aatgctttat gaatcctccc aggagacatt atgaaagtta tgcgtaccac cgtcgcaact
     2821 gttgtcgccg cgaccttatc gatgagcgct ttctctgtgt ttgcagaagc aagcctgaca
     2881 ggtgcaggtg caaccttccc tgcgccggtg tatgccaaat gggctgacac ttaccagaaa
     2941 gaaaccggta ataaagttaa ctaccagggt atcggttctt ccggtggcgt aaaacagatt
     3001 atcgctaata ccgttgattt tggtgcctct gacgcgccgc tgtctgacga aaaactggct
     3061 caggaaggtc tgttccagtt cccgaccgtg attggcggcg tggtgctggc ggttaacatt
     3121 ccagggctga agtctggcga actggtgctg gatggtaaaa ccctcggcga catctacctg
     3181 ggcaaaatca agaagtggga tgatgaagcc atcgccaaac tgaatccggg tctgaaactg
     3241 ccttcacaaa acattgctgt agtacgccgc gcagatggct ccgggacttc cttcgtcttc
     3301 accagctacc tggcgaaagt gaacgaagag tggaaaaaca acgttggtac tggctctacc
     3361 gtaaaatggc cgatcggtct gggcggtaaa ggtaacgacg gtatcgccgc gttcgttcag
     3421 cgtctgccgg gtgcaattgg ttatgttgaa tatgcttacg cgaagcagaa caacctggcg
     3481 tacaccaaac tgatctccgc tgatggtaaa ccggttagtc cgaccgaaga aaacttcgct
     3541 aatgcagcaa aaggtgcaga ctggagcaaa accttcgctc aggatctgac caaccagaaa
     3601 ggcgaagatg catggcctat tacctctacc acgttcattc tgatccacaa agatcagaag
     3661 aaaccagaac aaggcacaga agtgctaaaa ttcttcgact gggcgtacaa aaccggggct
     3721 aaacaggcga acgacctgga ttacgccagc ctgccggata gtgtagttga acaggttcgc
     3781 gctgcgtgga agaccaatat taaagacagt agcggtaagc cgctgtacta ataaaactcc
     3841 aggccgggta cggtgtttta cgccgcatcc ggcattacaa aatgactttg taaacgcgtt
     3901 taactgaaga gtaacttatg gctgcaacca agcctgcttt taacccaccg ggtaaaaagg
     3961 gcgacataat tttcagcgtg ctggtaaaac tggcggcgct gattgtgcta ttgatgttgg
     4021 gtggcattat tgtctctctg atcatctcct cctggccgag cattcagaaa tttggtctgg
     4081 ctttcctatg gaccaaagag tgggatgcac cgaacgatat ctacggggcg ctggtgccga
     4141 tctacggtac gttggtgact tcgtttatcg cgctgctgat cgccgtcccg gtgagtttcg
     4201 gtatcgccct gttcctgact gagcttgcgc ctggctggct gaaacgcccg ctgggtatcg
     4261 ccattgagct gctggcagcc attccaagta tcgtttacgg catgtggggc ctgtttatct
     4321 ttgcgccgct gttcgccgtt tactttcagg agccggtcgg caatatcatg tcgaatatcc
     4381 cgattgttgg cgcgctgttc tctggccccg catttggtat cggtatcctc gcggcaggcg
     4441 tgatcctcgc catcatgatt attccgtaca ttgcggcggt aatgcgtgat gtgttcgaac
     4501 aaaccccggt gatgatgaaa gagtcggcct acggtattgg ctgcaccacc tgggaagtta
     4561 tctggcgtat cgttcttccg ttcaccaaaa atggtgttat cggcggtatc atgctggggc
     4621 tgggccgcgc gctcggtgaa accatggcgg tgacctttat catcggtaac acctaccagc
     4681 tcgacagcgc ctcgctgtac atgccgggca atagtatcac ctctgcgttg gcgaacgaat
     4741 ttgcggaagc ggaatccggt ctgcacgttg ccgcactgat ggaactgggc ctgatcctgt
     4801 ttgtgattac cttcatcgtc ctcgccgcat cgaagtttat gattatgcgc ctggctaaga
     4861 atgagggggc acgctaatgg ctatggttga aatccaaacc actgcggcgc tggctgaatc
     4921 tcgccgcaaa atgcaggcgc gtcgccgcct caaaaaccgt attgcgctga cgctctcgat
     4981 ggcgacgatg gccttcggcc tgttctggct gatctggatt ttaatgtcca ccatcactcg
     5041 cggtatcgac ggtatgtcgc tggcgctgtt cactgaaatg acgccgccgc ccaatacgga
     5101 aggtggtggt ctggcgaacg ccctggcggg tagcgggctg ttaattttgt gggccacggt
     5161 attcggtacg ccgctgggca ttatggcggg gatttatctg gcggaatatg gtcgtaaatc
     5221 ctggctggca gaagtgattc gcttcattaa cgacattctg ctctccgcgc cgtcgattgt
     5281 ggttggtctg tttgtttaca ccatcgtggt ggcgcagatg gagcacttct ctggctgggc
     5341 gggcgtgatt gccctggcgc tgttgcaggt gccgattgtt atccgcacca ccgagaacat
     5401 gctgaaactg gtgccggaca gcctgcgtga agcggcttat gcgctgggta caccgaagtg
     5461 gaagatgatc tctgcgatta cgctgaaagc gtcggtgtcc gggatcatga ccggtatcct
     5521 gctggcgatt gcccgtattg ctggtgaaac cgcgccgctg ctgtttaccg cgctctccaa
     5581 ccagttctgg agcacggaca tgatgcagcc gatcgccaac ctgccggtga cgatctttaa
     5641 gtttgcgatg agcccgtttg cggaatggca acaactggcc tgggccgggg tattgattat
     5701 taccctgtgc gtactgctgc tgaacattct agcgcgcgtt gtttttgcga agaataaaca
     5761 cggttaacac tttgccggat gcggcgtgaa cgccttatcc ggcctacggt aagcctgatt
     5821 agcgaagtgc atcaggcacg atgaggaaaa gattgcaatg agtatggttg aaactgcccc
     5881 gagtaaaatt caggttcgta atttgaactt ctactacggc aaattccatg ccctgaaaaa
     5941 catcaacctg gatatcgcta aaaaccaggt tacggcgttt atcgggccgt ccggctgcgg
     6001 taaatcgacg ctgctgcgta ccttcaacaa aatgtttgaa ctgtacccgg agcagcgtgc
     6061 ggaaggtgaa attctgcttg atggcgacaa catcctgacc aactctcagg atatcgcact
     6121 gctgcgtgcg aaagtgggca tggtgttcca gaaaccgacg ccgtttccga tgtccatcta
     6181 cgacaacatc gcttttggcg ttcgtctgtt tgagaagctc tcccgtgccg acatggacga
     6241 gcgcgtgcag tgggcattga ccaaagccgc attgtggaac gaaaccaaag ataaattgca
     6301 ccagagcggt tactctctct ctggtggtca gcaacagcgt ctgtgtattg cgcgtggtat
     6361 cgccattcgc ccggaagtgc tgctgctcga cgaaccgtgt tcggcgctcg accctatctc
     6421 taccgggcgt attgaagagc tgatcaccga actgaagcag gattacaccg tggtgatcgt
     6481 cacccacaac atgcagcagg ctgcgcgttg ttccgaccac acggcgttta tgtacctggg
     6541 cgaattgatt gagttcagca acacggacga tctgttcacc aagccagcga agaaacaaac
     6601 agaagactac atcaccggtc gttacggttg attcaggagt gcgttatgga cagtctcaat
     6661 cttaataaac atatttccgg ccagttcaac gccgaactgg aaagtatccg cacgcaggtg
     6721 atgaccatgg gcggcatggt ggagcagcag ctttctgatg caatcaccgc gatgcataac
     6781 caggacagcg atctggcgaa gcgcgtgatc gaaggcgaca agaacgtcaa catgatggaa
     6841 gtggcgatcg atgaagcctg cgtgcgcatt atcgccaaac gtcagccgac ggcgagcgac
     6901 ctgcgactgg ttatggtgat cagtaaaacc attgccgagc tggagcgtat tggcgacgtg
     6961 gcggacaaaa tctgccgtac tgcgctggag aaattctccc agcagcatca gccgttgctg
     7021 gtaagtctgg agtcgctggg ccgtcatacc atccagatgc tgcacgacgt gctggacgcg
     7081 ttcgcgcgga tggacattga cgaagcggta cgtatttatc gtgaagataa aaaagtcgat
     7141 caggaatacg aaggtattgt tcgtcaactg atgacctaca tgatggaaga ttcgcgtacc
     7201 attccgagcg tacttactgc gctgttctgc gcgcgttcta tcgaacgtat tggcgaccgc
     7261 tgccagaata tttgtgagtt tatcttctac tacgtgaagg ggcaggattt ccgtcatgta
     7321 ggcggtgatg agctggataa actgctggcg ggaaaagata gcgacaaata attcaccaga
     7381 caaatcccaa taacttaatt attgggatt
//
LOCUS       DAJVSY010000183         7230 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.185, whole genome shotgun sequence.
ACCESSION   DAJVSY010000183 DAJVSY010000000
VERSION     DAJVSY010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7230)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7230)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7230
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.185"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..421
                     /gene="speG"
                     /locus_tag="OQQ19_003665"
     CDS             <1..421
                     /gene="speG"
                     /locus_tag="OQQ19_003665"
                     /EC_number="2.3.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="spermidine N1-acetyltransferase"
                     /protein_id="HCS1805139.1"
                     /translation="TTSHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAEFQIIIS
                     PEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFTVEGELMHE
                     FFINGQYRNAIRMCIFQHQYLAEHKTPGQTLLKPTAQ"
     gene            complement(424..1134)
                     /locus_tag="OQQ19_003666"
     CDS             complement(424..1134)
                     /locus_tag="OQQ19_003666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416102.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnfC family lipoprotein"
                     /protein_id="HCS1805140.1"
                     /translation="MKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSDEFDFDPLRG
                     PVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELLDLENNTVVALVLDANYYRDAET
                     LEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKS
                     NDKTLSVSATPSTDPIKKLDYTAVTLLNNQRVGNVKQSCEYDSHANPVDCQLIIVDEG
                     VKPAVERVYTIKNTIDYY"
     gene            1242..1520
                     /locus_tag="OQQ19_003667"
     CDS             1242..1520
                     /locus_tag="OQQ19_003667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707474.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1161 domain-containing protein"
                     /protein_id="HCS1805141.1"
                     /translation="MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPE
                     SSFTLSIVPNDQVDQPDSQVVGHCANDTHKILYTRTTSANVSAPAQST"
     gene            1747..4157
                     /locus_tag="OQQ19_003668"
                     /pseudo
     CDS             1747..4157
                     /locus_tag="OQQ19_003668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416104.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase subunit A"
     gene            4218..6641
                     /locus_tag="OQQ19_003669"
     CDS             4218..6641
                     /locus_tag="OQQ19_003669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416105.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase subunit A"
                     /protein_id="HCS1805142.1"
                     /translation="MKIHTTEALMKAEISRRSLMKTSALGSLALASSAFTLPFSQMVR
                     AAEAPVEEKAVWSSCTVNCGSRCLLRLHVKDDTVYWVESDTTGDDVYGNHQVRACLRG
                     RSIRRRMNHPDRLKYPMKRVGKCGEGKFERISWDEALDTISDNLRRILKDYGNEAVHV
                     LYGTGVDGGNITNSNVPYRLMNSCGGFLSRYGSYSTAQISAAMSYMFGANDGNSPDDI
                     ANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGREDEWLP
                     IRPGTDGALACAIAWVLITENMVDQPFLDKYCVGYDEKTLPANAPRNAHYKAYILGEG
                     PDGIAKTPEWAAKITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTSRAIAM
                     LSVLTGNVGINGGNSGVREGSWDLGGEWFPMLENPVKTQISVFTWTDAIDHGTEMTAT
                     RDGVRGKEKLDVPIKFLWCYASNTLINQHGDINHTHEVLQDDSKCEMIVGIDHFMTAS
                     AKYCDILLPDLMPTEQEDLISHESAGNMGYVILAQPATSAKFERKPIYWMLSEVAKRL
                     GPDVYQTFTEGRSQHEWIKYLHAKTKERNPEMLDYEEMKTTGIFKKKCPEEHYVAFRA
                     FREDPQANPLKTPSGKIEIYSERLAKIADTWELKKDEIIHPLPAYTPGFDGWDDPLRK
                     TYPLQLTGFHYKARTHSSYGNIDVLQQACPQEVWINPIDAQARGIRHGDTVRVFNNNG
                     EMLIAAKVTPRILPGVTAIGQGAWLKADMFGDRVDHGGSINILTSHRPSPLAKGNPSH
                     SNLVQIEKV"
     gene            6652..>7230
                     /gene="dmsB"
                     /locus_tag="OQQ19_003670"
     CDS             6652..>7230
                     /gene="dmsB"
                     /locus_tag="OQQ19_003670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
                     /protein_id="HCS1805143.1"
                     /translation="MTTQYGFFIDSSRCTGCKTCELGCKDFKDLGPEVSFRRIYEYAG
                     GDWQEDNGIWHQNVFAYYLSISCNHCDDPACTKVYPSGAMHKREDGFVVVDEDVCIGC
                     RYCHMACPYGAPQYNAEKGHMTKCDGCYSRVAEGKQPICIESCPLRALEFGPIEELRQ
                     KHGTLAAVAPLPRAHFTKPNIVIKPNANSRPTG"
BASE COUNT         1946 a         1823 c         1759 g         1702 t
ORIGIN      
        1 gaccacttca catattcacg atcagagcga acgacgcttt gtggtggaat gtgacggcga
       61 aaaagccggt ctggtggagc tggtggaaat taaccatgta catcgccggg cagaatttca
      121 gataattatc tccccggagt atcaggggaa aggtctggca acccgtgccg ccaaattagc
      181 aatggactat ggcttcaccg ttctcaatct ctataagctg tatctgatcg tcgataaaga
      241 gaatgaaaaa gcgattcaca tttaccgcaa gcttggcttt acggttgaag gtgaattgat
      301 gcatgagttt tttattaatg gtcaatatcg taatgccatt cgcatgtgta tattccagca
      361 tcagtatctg gcagagcaca aaacaccggg tcagactctc ctgaagccga ccgcacaata
      421 gcattaataa taatcgatcg tatttttgat ggtgtaaacc cgttcgacgg cgggttttac
      481 tccttcatca acaatgatca gctgacagtc caccggattg gcgtgactgt catattcaca
      541 gctctgtttt acattaccaa ctcgttgatt attcagtaaa gtaaccgctg tgtaatctaa
      601 ttttttgatc gggtccgttg atggcgtggc gctgacagat aatgttttgt cgttactttt
      661 cgtggtttta cccagtggat aaccctgatc atcatagcga tattccatct gcatttgttt
      721 gctgctggct ttaatcacga agccattatc atcggtttcc caactcaccc cggcagaagg
      781 taattctgct agctggcatt ttccctgtaa acgtactctc ttctccagcg tctcggcatc
      841 acggtaataa ttggcgtcca gtaccagagc gaccacggta ttattttcca gatccagtaa
      901 ttcgagtgaa tcaaaacagc cttcttccga caaagtccca gaaacacgtt tcgtcacttc
      961 accttgctca tccattaatg tctgagtgaa atcttttacc ggaccacgca gcggatcaaa
     1021 atcgaattca tcagagaaac tggccatctc aggggtaaat gaaagtgtta cctctgtgcg
     1081 gtcacatcct gtgaggaata tcgcgagtaa gcatggtagt aatttgtatt tcacaacagt
     1141 caccagagag tagagatgat tctcaatcat agtagcaaat acagtacttt acacgttaaa
     1201 tgctatgctt aaagaagtta tcttcgcgta aggagcttat gatgaaactc tcaacctgct
     1261 gtgccgcgct tctgctcgcc ctcgcctcac ccgcggtact cgccgcgccg ggatcctgtg
     1321 agcgcataca gagcgatata tcacagcgca ttatcaataa tggcgtaccc gaaagcagct
     1381 tcacattaag tattgtaccc aatgaccagg ttgatcagcc tgattcccag gtcgtcgggc
     1441 attgtgctaa tgatacgcat aaaattctct acacccgcac caccagcgct aacgtctctg
     1501 ctcccgcgca gtctacctag gatggcgcgc ctgccgaacc gcagtaatac attatcgact
     1561 gaacgccgga tatgacacat ccggcgattt gaacatacaa cataatccca ccttattact
     1621 catacccttc tattgatgtg gattaataat tcttaaccca aaatgggtat acccccctct
     1681 attgttagcg cgctaaatat tcaatacata aacatttata taacgataaa gaacagggag
     1741 tgagttatgt ccaaaaatga ccgaatggtg ggcatcagcc gcagaacact cgttaaatca
     1801 accgcgatag gttctctggc gctggctgca ggcggttttt ctttaccgtt caccctgcgc
     1861 agtgcagcgg caacggtaca acaggccagc gaaaaagtga tctggggtgc ctgttccgtc
     1921 aactgtggta gccgctgtgc acttcgtcta catgttaaag ataatgaagt gacctgggtg
     1981 gaaactgaca ataccggcag cgatgagtac ggcaaccatc aggtacgcgc ctgtttgcgc
     2041 ggtcgctcca tccgccggcg tattaatcat cccgatcgct tgaattaccc aatgaaacgc
     2101 gtgggtaaac gcggtgaagg caaattcgaa cggattagct gggatgaagc cctggatact
     2161 atcgccagta gcctgaaaaa aaccgtcgaa caatatggca atgaggctgt atatattcag
     2221 tactcttcgg ggattgttgg cggcaatatg acccgctctt cgccatcagc ctcggcggtc
     2281 aaacgcctga tgaactgcta cggcggttca ctcaatcagt atggctccta cagcaccgca
     2341 caaatttcct gtgccatgcc ctacacctac ggcagtaatg atggcaacag caccacggat
     2401 attgaaaaca gcaagctggt cgtgatgttt ggtaacaacc cggcagaaac ccgcatgagc
     2461 ggcggtggca tcacttatct tcttgaaaaa gcgcgcgaga aatcgaacgc caaaatgatt
     2521 gttatcgatc cgcgatatac cgatacggct gctggtcgtg aagatgaatg gcttcctatt
     2581 cgcccgggca ccgatgccgc gctggttgcg ggtattgcct gggtattgat taacgaaaat
     2641 ctcgttgatc aaccttttct cgataaatac tgcgtcggct atgacgaaaa aaccttaccc
     2701 gcagatgcac caaaaaatgg tcactataaa gcctatattc ttggtgaagg tgatgataat
     2761 acagcgaaaa cgccgcagtg ggcttcgcaa attaccggta tcccggtgga ccgtatcatc
     2821 aaactggcgc gtgaaattgg cacagcaaaa cccgcttata tctgccaggg ctgggggccg
     2881 caacgccagg caaacggcga actgactgca cgcgctattg ctatgttgcc tattttgacg
     2941 ggcaatgtcg gcatcagcgg cggaaatagt ggcgcgcgtg aatcgaccta taccattacc
     3001 atagaacgcc tgccggtgct ggataatccg gtcaaaacgt caatctcctg cttcagctgg
     3061 acagatgcta tcgatcatgg tccgcaaatg acggcaatcc gcgacggcgt ccgcggcaaa
     3121 gataaactgg atgtgcccat taagttcatc tggaactacg cgggaaatac cctcgttaat
     3181 cagcattctg acatcaacaa aacgcatgaa attctgcagg acgaatcgaa atgcgaaatg
     3241 attgtggtca tcgaaaactt tatgacctca tcggcaaact gccagacctg atgaccgttg
     3301 agcaggaaga tattattcct aacgactacg ccggtaacat gggatatctc attttcctcc
     3361 agcctgtcac cagcgaaaaa ttcgaacgca aaccgattta ctggatcctg agtgaagtcg
     3421 cgaaacgtct tggacctgac gtctatcaaa agttcacaga aggtcgcacg caggaacaat
     3481 ggttacaaca tctgtacgcc aaaatgcttg ccaaagatcc ggcgttaccg tcttacgacg
     3541 aactgaaaaa aatgggtatc tataagcgta aagatcccaa tggccatttt gtcgcctaca
     3601 aagcatttcg tgacgacccc gaggcaaatc cacttaaaac gccttccggt aagattgaaa
     3661 tttattccag caggctggcg gaaattgccc gtacctggga actggaaaaa gatgaagtga
     3721 taagcccatt gccagtttat gcctcaacct ttgaaggctg gaactcccct gaacgtagaa
     3781 ccttcccact gcaactgttt ggtttccatt acaaatcccg tactcactcg acctacggca
     3841 atattgatct cctgaaggct gcctgccgtc aggaggtgtg gatcaaccct atagatgcgc
     3901 agaaacgtgg gattgccaac ggcgatatgg tgcgggtgtt taaccatcgt ggcgaagttc
     3961 ggctaccagc caaagtaaca ccacgtattc tccctggagt tagcgctatg ggccagggag
     4021 cctggcacga ggccaatatg tctggcgata aaatcgacca tggcggctgt gtgaatacgc
     4081 taaccactct gcgcccttca ccactggcga agggaaaccc gcagcacact aatctggtcg
     4141 agatcgaaaa aatataaccc acgacaacca taaattctgg catgacattt tgtttgaaaa
     4201 gcaataagtg agtaatgatg aaaatccata ccacagaggc gctcatgaag gctgaaatca
     4261 gccgtagaag tctgatgaaa acctccgcac ttggcagtct tgcgctggca agcagtgctt
     4321 tcactctgcc attttcccaa atggtccggg cggcagaggc tccggtagaa gagaaagcgg
     4381 tctggagttc ctgcaccgtt aactgcggga gccgctgtct gttacgtttg catgtgaaag
     4441 atgacaccgt gtactgggtg gagtctgata cgacaggtga cgacgtctac ggtaatcatc
     4501 aggttcgagc gtgtttacgc gggcgctcta tccgccgacg gatgaatcat cctgataggt
     4561 tgaaatatcc catgaagcgc gtcggcaagt gcggtgaagg taaatttgaa cggataagtt
     4621 gggacgaagc cctggatacc atcagtgata atcttcggcg gatcctgaaa gattacggca
     4681 atgaggctgt acatgtcctg tacggaacag gcgtagatgg cggaaacatc accaactcaa
     4741 acgtcccgta ccgtctgatg aactcttgcg gtggttttct cagtcgctat ggcagctaca
     4801 gtaccgcaca gatcagtgcc gcaatgagtt atatgttcgg tgccaatgat ggcaacagcc
     4861 cggatgatat cgccaatacg aaactggtcg ttatgttcgg aaataacccg gcagaaacgc
     4921 ggatgagcgg cggtggtgtc acttactacg tcgagcaagc ccgcgaacgt tcaaacgcac
     4981 gcatgatcgt catcgatcca cgttataacg acactgctgc cgggcgtgaa gatgaatggc
     5041 tgcctattcg ccctggcacc gatggcgcac tggcctgtgc gattgcctgg gtactgatta
     5101 ctgaaaacat ggtcgatcag ccatttctcg acaaatattg tgttggttac gatgaaaaaa
     5161 cgctgcccgc caacgcacca cgtaacgcgc attataaagc ctatattctg ggcgaagggc
     5221 ctgacggcat agctaaaacg ccggaatggg cagcaaaaat caccagcatc ccggcagaaa
     5281 aaattatcca gttggcgcga gagatcggtt cagcaaaacc tgcttatatt tgtcagggtt
     5341 gggggccaca acgacattcc aacggcgagc aaacgtcccg cgctattgcc atgctttccg
     5401 ttctcaccgg taacgttggc ataaacggcg gcaactcagg tgtacgcgaa ggtagctggg
     5461 atctgggggg agaatggttc ccgatgcttg agaatcctgt taaaacgcag atttccgtct
     5521 ttacatggac agatgccatc gaccatggta cggaaatgac cgcgacccgt gatggtgttc
     5581 gtggaaaaga aaaactggat gtccccatca agtttttatg gtgctacgcc agtaacacat
     5641 tgatcaatca acatggcgac atcaatcaca cccatgaggt gcttcaggat gacagcaagt
     5701 gcgagatgat tgttggcatt gaccacttca tgacggcctc ggctaagtat tgcgatatcc
     5761 tgttgcccga cctgatgcca acagagcaag aagaccttat ctctcatgaa tctgcaggga
     5821 atatgggcta tgtgatcctc gcccaacccg caacctcagc aaaatttgaa cgcaaaccca
     5881 tctactggat gctgagtgaa gtcgccaaac gcttaggacc agacgtttat caaaccttta
     5941 ctgaaggtcg cagtcagcat gaatggatca aatatctcca tgcgaaaacg aaggaacgta
     6001 accctgagat gctcgactac gaggagatga aaacgaccgg gatctttaag aaaaaatgcc
     6061 cggaagaaca ctacgtcgct ttccgcgcat tccgtgaaga tccacaggca aacccgttga
     6121 aaacaccttc ggggaaaatc gaaatttatt ctgaacgact ggcgaagatt gcagatacct
     6181 gggaattgaa aaaagatgaa attattcatc cccttcctgc gtatacccca ggttttgatg
     6241 gctgggacga tcccctgcgg aaaacctatc cactgcagtt aacgggcttc cactacaaag
     6301 cgcgtaccca ctccagctac ggcaatattg atgtgttaca gcaggcctgc ccacaagagg
     6361 tgtggatcaa ccccattgat gctcaggcac gcggtatccg tcatggcgat accgtgcggg
     6421 tatttaacaa taatggagaa atgctgattg ccgcaaaagt gactccgcgt attctgcctg
     6481 gcgttaccgc catcgggcaa ggtgcgtggc ttaaagcgga tatgtttggt gaccgggtcg
     6541 atcacggcgg cagtatcaat attctgacct ctcaccgccc ttcaccgctg gcaaagggaa
     6601 acccgtcgca cagcaatctt gtccagatcg aaaaggttta aggagtagcc catgaccaca
     6661 caatatggat tttttatcga ttccagccgc tgtactggct gtaaaacctg cgaactgggg
     6721 tgcaaagatt ttaaagatct tggcccggaa gtcagtttcc gccgtattta tgaatatgct
     6781 ggcggcgact ggcaggaaga taatggcatc tggcaccaga acgtgttcgc ttattatctc
     6841 tccatctcct gtaaccattg cgatgacccc gcatgtacaa aagtctaccc cagcggcgca
     6901 atgcataagc gtgaagatgg ctttgtggtg gttgatgaag atgtttgtat cggctgccgc
     6961 tactgccaca tggcttgtcc gtacggcgca ccacagtaca atgctgaaaa agggcacatg
     7021 acgaagtgcg atggttgtta ttcgcgcgtc gccgagggga aacaacccat atgcatcgaa
     7081 tcctgcccgc tgcgtgcact tgagttcggt ccaattgaag agctgcgcca gaagcacggc
     7141 actctggctg ccgtcgcgcc actgccgcgc gcgcatttca caaaacccaa tatcgttatc
     7201 aaacctaacg ccaacagccg cccgaccggc
//
LOCUS       DAJVSY010000184         7225 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.186, whole genome shotgun sequence.
ACCESSION   DAJVSY010000184 DAJVSY010000000
VERSION     DAJVSY010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7225)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7225)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7225
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.186"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            600..884
                     /locus_tag="OQQ19_003671"
     CDS             600..884
                     /locus_tag="OQQ19_003671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858243.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HCS1805144.1"
                     /translation="MIYGGFMKSGVQLNLRARESQRILIDAAAEILHKSRTDFILEMA
                     CKAAEDVILDRRVFNFNDRQYEEFIEMLDAPVADDPAIEKLLARKPQWDV"
     gene            872..1357
                     /locus_tag="OQQ19_003672"
     CDS             872..1357
                     /locus_tag="OQQ19_003672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1805145.1"
                     /translation="MGCVTAPEPLSSFHQVAEFVSGEAVLDDWLKQKGLKNQAIGATR
                     TFVVCRKGTQQIVGFYSLATGSVNHTEATGNLRRNMPDPIPVIILARLAVDVSFRGKG
                     LGADLLHDAVRRCYRVAENIGVRAIMVHALTENAKQFYIHHGFKPSKTQVQTLFLKLP
                     Q"
     gene            1391..2569
                     /gene="ltrA"
                     /locus_tag="OQQ19_003673"
     CDS             1391..2569
                     /gene="ltrA"
                     /locus_tag="OQQ19_003673"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005017045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HCS1805146.1"
                     /translation="MCVATREPPGCDGQTLKMFDQQRDGNLYKIWNRLCSGTWFPPPV
                     LEKRIPKSNGKERILGIPTVSDRIAQGAIKLFMEEKLDPIFHADSYGYRPGKSAHDAL
                     KQCAIRCWRYSWILEVDISAFFDHVKHDLVLKALEHHGMPKWVILYCRRWMEAPMQSC
                     ENGELITRTRGTPQGGVISPLLANLFLHYAFDLWMEREYRGVPFERYADDIVVHCSRM
                     SDATRLKNRLSERFSEVGLVLNAGKTNIAYIDTFKRRNVATSFTFLGYDFKVRTLKNF
                     KGERYRKCMPGASNAAMRKITETIKKWRIHRSTAESLLDFARRYNTIVRGWIEYYGKF
                     WSRNFNYRLWSAMQSRLLKWMQSKYRLSNRKAQRKLTLVRKEYPKLFVHWYLLRASNE
                     "
     gene            2652..2806
                     /locus_tag="OQQ19_003674"
                     /pseudo
     CDS             2652..2806
                     /locus_tag="OQQ19_003674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(2860..3342)
                     /locus_tag="OQQ19_003675"
                     /pseudo
     CDS             complement(2860..3342)
                     /locus_tag="OQQ19_003675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016154415.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
     gene            complement(3598..4578)
                     /locus_tag="OQQ19_003676"
     CDS             complement(3598..4578)
                     /locus_tag="OQQ19_003676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HCS1805147.1"
                     /translation="MENRKHRPTIGRTLNTNILNNTEEISAPVHVFTLNTGRKAKFTE
                     IKVDHDKVDTQTFVVEEVNGREQTALTPDSLKDITRTIRLQQFYPCIGIRTGDLIEIL
                     DGSRRRAAALLCKVGLRVLVTDDELTVSEAQHLAKDLQTSLEHNIREIGLRLVRLKEA
                     GMNQKQIAEREGLSAAKVTRALQAASVPKDFVSLFPVQSELTYADYRQLAELSERLRL
                     GDISIDEVVKNISPSIELITADDNLSEDEVKNSIMRLITKEMSSLLDSGVKDKAVVTL
                     LWKFDSKDKFARKRVKGRTFSYEFGRLPLEVQDKLDRMIALVLKDNLNSL"
     gene            complement(4578..5777)
                     /locus_tag="OQQ19_003677"
     CDS             complement(4578..5777)
                     /locus_tag="OQQ19_003677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCS1805148.1"
                     /translation="MTSFEQLSKVAQRADKMLLALTKQIQEQKQEFQADVFYQVYSKS
                     AVAKLPKLTRASVDGAVGEMEAQGYQFEKRPAGTATKYALTIQNIIDIYAHRGIPKYR
                     DRYSEAYSIFIGSLKGGVSKTVSSVSVAHALRAHPHLLSEDLRILLLDLDPQSSATMF
                     LNYLHAVGLVDTTAPQAMLQNVSREELLEDFIVPSVIPGVYVMPASIDDAFIASNWDT
                     LCEEHLLGQNKHAILRENIIDKLKHDFDFILIDTGPHLDAFLKNAIAAADIMFTPVPP
                     AQVDFHSTLKYLARLPELVQIIEQDGCSCRLQANIGFMSKLANKSDHKYCHSLTKEIF
                     GGDMLDVSMPRLDGFERSGESFDTVISANPVTYVGSGEALKNARMAAEDFAKAVFDRI
                     EFIRANY"
     gene            complement(6099..6437)
                     /locus_tag="OQQ19_003678"
                     /pseudo
     CDS             complement(6099..6437)
                     /locus_tag="OQQ19_003678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(6504..>7225)
                     /gene="istB"
                     /locus_tag="OQQ19_003679"
     CDS             complement(6504..>7225)
                     /gene="istB"
                     /locus_tag="OQQ19_003679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS21-like element IS100kyp family helper ATPase
                     IstB"
                     /protein_id="HCS1805149.1"
                     /translation="LISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTR
                     MAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAM
                     GYEAVRAGIQVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQ
                     KEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLGRILHHSHVVQIK
                     GESYRLRQKRKAGVIAEANPE"
BASE COUNT         1922 a         1647 c         1731 g         1925 t
ORIGIN      
        1 ggcggcatcc ggcatatagg cagcatgaac gcaacacagg ctctcgtacg gaacgtggga
       61 acctgtcgtc tcgatgctaa gggagcggcg cggagcagag gcactgcaag cgcctgagta
      121 ccgatgcgag acacaggggc agatggcttc gtagtagtga ggaagtgcct gtaatgggca
      181 tggagcgaag ggggtcagtc gaggcgtttg aggttaccaa tcgaagctat acccggtaat
      241 ggcgcaggtt gacctgcact tggccaagtg gattgcccgc aaacacaagc gagcgcgagg
      301 tagtctggtg cgtgcattcg agtggttact gcgaattcgt cacgactgcc cgacgctgtt
      361 tgcacactgg tgcttagctt acgatacttg aatggttcaa cgacaagagc cgtatgacgc
      421 gagagtgtca cgtacggttc cgtgggagcg taggggggcg gtgcccctgc gccacccgat
      481 atcccctttg agtgcggtta cgtccacaga ggtaaatgcc gctgacgcgg catctgtaat
      541 ctgttacttt gtgtacatca tttgctatat attgtcaata tgctattgtt gtaaagcaaa
      601 tgatatacgg aggctttatg aaatcaggtg ttcagctcaa tctcagagca agagaatcac
      661 agcggatact cattgatgct gctgcagaaa ttcttcataa gtcgcgtaca gatttcattc
      721 tggaaatggc ctgtaaagct gctgaagatg ttattctcga ccggcgggtg tttaatttta
      781 atgacaggca atatgaagag ttcattgaaa tgcttgatgc tccggttgca gatgatcctg
      841 ccatcgaaaa attgctggca aggaaacctc aatgggatgt gtaactgcac cagaaccttt
      901 atcctcattt catcaggtcg ctgaatttgt cagcggtgaa gctgtacttg atgactggtt
      961 aaagcagaag gggctaaaaa atcaggcaat cggagccacc cggacttttg ttgtatgcag
     1021 aaaaggtacg caacaaatag tcggttttta ctcactggcc actggtagtg tcaatcatac
     1081 agaagctaca ggtaaccttc ggcgcaatat gccagacccc attcctgtaa ttatacttgc
     1141 acgcctggct gtagatgtgt catttcgagg aaaagggctt ggcgcggatt tacttcatga
     1201 tgcagttcgt cgttgttaca gggttgccga aaatatcggt gtgcgtgcaa ttatggttca
     1261 tgcgcttacg gaaaacgcaa aacagtttta tattcatcat ggttttaagc catcaaaaac
     1321 tcaggtgcaa acattgtttc ttaaactccc tcaataggga gtaatgcact ggtctgggca
     1381 tcatatctgg atgtgcgtcg caacaaggga gccccccgga tgcgacgggc agactttgaa
     1441 aatgttcgac cagcaacgtg atggcaatct atacaagatc tggaaccggc tatgttcggg
     1501 aacatggttt ccgccaccag tgctggaaaa acggatcccg aagtcgaatg gcaaggaacg
     1561 cattctgggg atcccaacag tatccgatcg aattgctcag ggagcgataa aacttttcat
     1621 ggaagaaaag cttgacccga ttttccatgc tgattcatat ggttaccgac caggcaaatc
     1681 agctcatgac gctctgaaac aatgtgccat ccggtgctgg cgttatagct ggatactgga
     1741 agtggacatc agtgcgtttt tcgaccatgt gaaacatgat ctggtgctca aagctctgga
     1801 acaccacggg atgcctaaat gggtcatcct gtactgtcga cgctggatgg aagcgccaat
     1861 gcagagttgt gaaaatggag aattaataac ccgaacacga ggcactccgc agggcggggt
     1921 cattagtccg ctacttgcta acttgttcct tcactatgca tttgatttgt ggatggaaag
     1981 agaatatcgg ggggtaccgt ttgagaggta cgctgacgat attgtagtac attgttcacg
     2041 aatgagtgat gcaacaaggc taaagaacag gttatcggag cgcttctcgg aagtcgggct
     2101 ggtcctgaat gcagggaaaa cgaatatcgc ctacattgac acgtttaaaa ggagaaacgt
     2161 cgcaacgagt ttcacctttc tcggatatga cttcaaagtg cgtacgctga agaatttcaa
     2221 aggcgaacgg taccgaaaat gcatgccggg tgcgtcaaat gcagcaatgc gcaaaataac
     2281 agaaacaatc aagaagtggc gtatacatcg ctcaacagct gagagtttgc tggattttgc
     2341 gaggcgctac aatacgatag tgagaggctg gatcgagtac tacggaaagt tctggtccag
     2401 aaatttcaac tatcgactgt ggagtgcaat gcagtcacgt ctgctcaagt ggatgcagtc
     2461 taaatacaga ctttcgaacc ggaaggctca gcgaaagctg acgctggtaa ggaaggagta
     2521 tccgaagcta tttgttcact ggtatttact acgtgcatca aatgagtgat caagagccgt
     2581 atgacgcgag agtgtcacgt acggttccgt gagcagccgg ggagtgaaat tctctccggc
     2641 tgactcgact cgcgggttcc gacagcgatg acgaacatgc ggcggtgttg tactcgctga
     2701 tcggcacatg ccgtctgaac aatgtggaac cagaaaatgg ctgcgttacg tcattgagca
     2761 tatccaggac tggccggcaa accgggtacg tgatctgttg ccctagaaag ttgatctgag
     2821 ctctcagtaa atatcaatac ggttctgacg agccgcttac ttttggcgta attctgctgc
     2881 gcctttactg aacacaatgc cgtattcagc aagaagtcca cgaatgtgat ttatcagttg
     2941 tgtcctttcc attgaaacca accgacgcat attcaaaaaa gtttggacgt cctgttgctc
     3001 cagagttttt attggtacgg gtcgtatagt tccatgttgg caggcctcag ctattgcctg
     3061 tgcgtcgtta taatcatttt tctggcaccg ctgataagct ttaacatgtt gtgccggaag
     3121 caatattaca tcatggtcga gtttcctgat ttcccgggcc cagtaatgag atgccccgcc
     3181 agcctccatc gcaacagtca ttttaggctg ttgcaccagc cagttaagca gttgattgcg
     3241 agaaagtttg gtctttcctg cgggtttgcc atgagcattg atactgaaaa gataaaagtt
     3301 cgttttagcc agatcaatgc cggtgatttt ctgttcagac atggtatccc gcttactttt
     3361 gtggttaaag tttatccatc atggcgcaat tgaaggctgc cgtgaaagag ggggaagact
     3421 atctcatcgg ttactgttaa acggctaaga gaaactatct ttttcaagca aagaagatac
     3481 ggtgaaacag gcgatttcac cgtgaaatac tgttcaaaaa aaacgctaat aaaagcaaaa
     3541 tttcttttaa aacagccaat taaaaactgg tgagttgctg gcgaaaaact tgaattttca
     3601 cagcgaattc agattatctt ttagtacaag agcaatcata cgatctaact tatcctgaac
     3661 ttccaacggt aatctgccga attcatatga gaacgtacgt ccctttactc gttttcgagc
     3721 aaatttatct ttactatcaa atttccataa caaagttaca accgctttat cctttactcc
     3781 tgaatcaagc aatgaagaca tttccttggt tataagccgc ataatactgt ttttaacctc
     3841 gtcttcagaa agattgtcat cagcagtaat aagctcaata ctcggcgaga tattcttcac
     3901 aacttcatca atagatatat cacccagcct cagtcgttca cttaattcag ccagttgcct
     3961 gtaatcggcg tatgtcagct cagactgaac aggaaaaaga gacacaaaat ctttaggtac
     4021 ggacgctgct tggagggcac gagtcacctt agctgccgac aatccctctc tttccgcaat
     4081 ttgcttctgg ttcataccgg cctctttgag acgtactaaa cgcaacccaa tttcacgaat
     4141 attatgttca agtgacgtct gcaaatcttt cgccagatgc tgagcttcag aaacagtaag
     4201 ctcatcatcc gttacaagta cacgtaatcc aaccttgcat agcaaagctg ctgcccgacg
     4261 acgggaacca tccaaaatct caataagatc gccagtccga atcccaatac atggatagaa
     4321 ttgttgtaaa cgtatagttc tggtgatgtc ttttagtgag tccggcgtca gggctgtctg
     4381 ttcgcggcca ttcacctctt caaccacaaa agtttgagtg tccactttgt catgatcaac
     4441 cttgatctca gtaaattttg cctttcggcc agtattgagg gtaaatacat gaactggagc
     4501 cgatatttct tcagtattat tcaggatatt tgtattcagc gtacggccaa tagtcggtcg
     4561 gtgctttctg ttttccatca gtagttggcc cttataaatt caatacgatc aaaaactgct
     4621 ttagcgaaat cttctgctgc catacgtgca tttttcaaag cttcaccact gccaacataa
     4681 gtaacaggat tcgcagatat cacggtatca aacgactcgc cgcttctctc aaaaccatca
     4741 agacgtggca ttgaaacatc aagcatgtca ccaccgaaaa tctcttttgt caggctatgg
     4801 cagtatttat gatctgactt attcgccagt ttcgacatga agccaatatt tgcctgcaaa
     4861 cggcatgaac atccatcctg ttcaataatc tgtacaagtt caggtaaacg agccaaatat
     4921 ttaagcgtgg aatggaaatc aacttgtgct ggcggcaccg gtgtaaacat gatatctgcg
     4981 gcagcaatgg catttttcaa aaatgcgtcc agatgcgggc ctgtatcaat aaggatgaag
     5041 tcgaaatcat gcttcagctt atcaataata ttctcacgca atatcgcgtg tttgttttgt
     5101 cctaatagat gctcctcgca cagagtatcc cagtttgatg caataaaggc gtcgtcaata
     5161 gaagccggca taacataaac gccagggata actgacggaa cgataaaatc ttccagtaat
     5221 tcctcacgac tcacgttctg caacatagcc tgcggtgcgg ttgtatcaac cagccccacc
     5281 gcatgcaagt agttcagaaa catagtggct gatgactggg gatctaaatc aaggagcaga
     5341 atacgtaaat cttctgacag caggtgagga tgagcacgca gggcgtgagc tacggaaaca
     5401 ctactcacgg ttttagacac accgcctttt agactaccga tgaatatgga atatgcctca
     5461 ctataacgat cgcgatattt aggaatgcca cgatgtgcat agatatcgat aatgttctgg
     5521 atggttaatg catattttgt cgcggttcct gctgggcgtt tttcaaactg atagccctga
     5581 gcctccatct caccgactgc accatccacg cttgcgcgcg ttaattttgg aagcttagct
     5641 acagcagact ttgaatagac ttgataaaaa acatcagcct gaaactcctg cttttgctcc
     5701 tgaatctgtt ttgttagggc gagcaacatt ttatctgcac gctgcgcaac cttacttaac
     5761 tgctcaaaac tagtcattcc ccctccgtgc tatgtaggat tttaacttat tacaaaaaaa
     5821 actgcattag cagggtaatg catgcaagtg catattgtac atgcttatat taaaaatgcg
     5881 cgcattgctg atttattaat catcggaatg aatattactg taagatagta tgcctttccg
     5941 ggagaaagac gctgatttcc cccgaataat ccagttcacc accacactcc ggacaacagc
     6001 tttcttcagg ctccagatgg tgtatttcgc gggaaacatg ttccggtaac ggacggcgat
     6061 gacgtgactg tcgcaacagg cgggggtagt gcttccaatc agtagaacat gtgcttttca
     6121 atgaaggagc cgatgacttt ttcgtggatt tccacggaac gcgagaagca gattgtttta
     6181 cgtgccagcc gcttgatgcg ggtgcggagg gtccggttgt tacgttcaat acgttgcgtg
     6241 aagattttgc cggtcaggtg tttctccttc ggcacttctc tggcgtagct gccccagtca
     6301 tcgctggtca ccatgccgat acagaacgga gtcaacaggg ctaacagttc ccgacaggtc
     6361 tcatcattcc gtggcccgaa agtgtaagcc aacacaccgc cagttttagt gttgtacgca
     6421 taccagagcc agtgttgtgt caacgacgga tgaaaagtga tccacttata tctccaccaa
     6481 cggcccaata ttgatccacc gttttactca ggattagctt ctgctataac cccggccttt
     6541 cgtttctgtc tgagtcgata gctttctcct ttgatttgaa cgacatgtga gtggtgtaag
     6601 atacggccca gcatcgctga ggtcagtgct gcatcaccgg cgaacgtttg atcccactgc
     6661 ccgaacggta gattggatgt caggatcatt gcgctctttt cataacgttt agcgatgacc
     6721 tggaagaaca gttttgcttc tttctgactg aacggcagat agcctatttc atcaatgatg
     6781 agcaggcggg gggccattac tccacgctga agcgtcgttt tataacggcc ctgacgttgt
     6841 gccgtagata actgaagtaa cagatctgct gctgttgtga agcgaacttg gatacctgca
     6901 cggactgctt catagcccat cgcgattgcc agatgggttt tccccacacc tgatggcccc
     6961 agtaatacga tattttcatt acgttctatg aagctgagtg agcgtaacga ctggagttgc
     7021 ttctgcggtg ctccggtggc gaatgtgaag tcatactctt cgaacgtttt caccgccggg
     7081 aaggctgcca ttcgggtata catcgcctgt ttacgttgat gacgtgccag tttttcttca
     7141 tgaagcagat gctccaggaa gtccatataa ctccattcct ggtctactgc ctgttgtgac
     7201 agcgcaggcg ctgcgcttat aaggc
//
LOCUS       DAJVSY010000185         7203 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.187, whole genome shotgun sequence.
ACCESSION   DAJVSY010000185 DAJVSY010000000
VERSION     DAJVSY010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7203
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.187"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(235..789)
                     /locus_tag="OQQ19_003680"
                     /pseudo
     CDS             complement(235..789)
                     /locus_tag="OQQ19_003680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3-like element IS3H family transposase"
     gene            932..1054
                     /locus_tag="OQQ19_003681"
                     /pseudo
     CDS             932..1054
                     /locus_tag="OQQ19_003681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(1316..1882)
                     /gene="ipgB2"
                     /locus_tag="OQQ19_003682"
     CDS             complement(1316..1882)
                     /gene="ipgB2"
                     /locus_tag="OQQ19_003682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858157.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion effector IpgB2"
                     /protein_id="HCS1805150.1"
                     /translation="MLGTSFNNFGISLSHKRYFSGKVDEIIRCTMGKRIVKISSTKIN
                     TSILSSVSEQIGENITDWKNDEKKVYVSRVVNQCIDKFCAEHSRKIGDNLRKQIFKQV
                     EKDYHISLDINAAQSSINHLVSGSSYFKKKMDELCEGMNRSVKNDTTSNVANLISDQF
                     FEKNVQYIDLKKLRGNMSDYITNLESPF"
     gene            complement(2164..2478)
                     /locus_tag="OQQ19_003683"
     CDS             complement(2164..2478)
                     /locus_tag="OQQ19_003683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805151.1"
                     /translation="MLQRQRGKVGFAQLPVDFVAIEPDSAQGVGKRANLTNRCFIIRI
                     NDSFKKRQGFIEFISNSGSGHTVTVYTKRRFQRGVFMNSLNTNVVKPVMYRLRSSADA
                     RP"
     gene            complement(2556..2666)
                     /locus_tag="OQQ19_003684"
                     /pseudo
     CDS             complement(2556..2666)
                     /locus_tag="OQQ19_003684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(2990..3667)
                     /gene="ospD1"
                     /locus_tag="OQQ19_003685"
     CDS             complement(2990..3667)
                     /gene="ospD1"
                     /locus_tag="OQQ19_003685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector/anti-activator
                     OspD1"
                     /protein_id="HCS1805152.1"
                     /translation="MSINNYGLHPANNKNMHLIIGSNTANENKGMKRNIINVTNTAIS
                     HAINEEKSGGGYSGVSFRKLAKIQSISIPTKNNKEYNRHNLFSLIWHGNADAARKYGE
                     SLLAAEIPKEEKLEVLAARNNAGESALFIALQEGHSAAIQAYGDFIKTFDLSPKETIK
                     LLDVRDNEGLPGLFLAAGKGNIEAMMAYINICHHSGIKLTEIADRLNNNEQDMFNIIS
                     DKIQELF"
     gene            complement(4038..4175)
                     /locus_tag="OQQ19_003686"
                     /pseudo
     CDS             complement(4038..4175)
                     /locus_tag="OQQ19_003686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011787828.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
     gene            complement(4257..4555)
                     /locus_tag="OQQ19_003687"
                     /pseudo
     CDS             complement(4257..4555)
                     /locus_tag="OQQ19_003687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343747.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(5144..5303)
                     /locus_tag="OQQ19_003688"
                     /pseudo
     CDS             complement(5144..5303)
                     /locus_tag="OQQ19_003688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(5307..6461)
                     /locus_tag="OQQ19_003689"
                     /pseudo
     CDS             complement(5307..6461)
                     /locus_tag="OQQ19_003689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            complement(6481..6828)
                     /gene="tnpB"
                     /locus_tag="OQQ19_003690"
     CDS             complement(6481..6828)
                     /gene="tnpB"
                     /locus_tag="OQQ19_003690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS1805153.1"
                     /translation="MISFPAGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLF
                     IFRGRRGDQIKVLWADSDGLCLFTRRLERGRFVWPVTRDGKVHLTPAQLSMLLEGIDW
                     KHPKRTERAGIRI"
     gene            complement(6828..>7203)
                     /locus_tag="OQQ19_003691"
     CDS             complement(6828..>7203)
                     /locus_tag="OQQ19_003691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001743492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1805154.1"
                     /translation="RRPNFPYEFKIALVEQSLQPGACVAQIARENGINDNLLFNWRHQ
                     YRKGGLLPSGKNMPALLPVTLTPEPDNKIPAPAQEPEQINTPSDSLCCELVLPAGTLR
                     LKGKLTPALLQILIREIKGSSH"
BASE COUNT         1858 a         1677 c         1557 g         2111 t
ORIGIN      
        1 aaaccttctc atgtttagag ttttttatta tgtttatcat aatgatatga cgatctgagt
       61 ttttaaaatc aagaagaaaa gataagtttt ttaaatgcac agtgcctgtg gataactttg
      121 cgtaaatccg gaggacagat cactctgaag caagacaaca gcatctgaaa acaatatgct
      181 cacgtttcaa ccacagggcg taagtgatcc tacccacgta atatggacac aggcctaagc
      241 gaggttctgg ttttcaaatt gttccggact gaggccgcca caccaactgt gccgtcgcca
      301 gcgattgtaa tcacattcga tataattaaa cactgttgcc cgcattattt cccggctgat
      361 aaagtgttct ccgtggagac attccacttt cagcgaatga aagaagcttt ccacgcaggc
      421 attatcgtag cagcagccct ttgcgctcat actgccacgc agattatgcc acttcagcag
      481 cgcctgataa tctgctgaac agtactgact tcctcggtcc gagtgaacga taacgttccg
      541 gggtctctta cgccgccaca gcgccatctg cagggcatcg caggccagtt gcgccgtcag
      601 gcgtggtgac atggaccagc caataacggc acgtgaccac aggtcaatga ccacagccag
      661 atacagccag ccttcatctg tacgtaagta cgtgatgtct cccgcccact tctggttcgg
      721 accactggcg taaaaatcct gctccagcag attttctgac acaggcaggc catgtgcgcg
      781 gtaactgacc gtattgctgg gtaagatcaa tttgctcact ggtatttact acgtgcatcg
      841 aatgagtgat caagagccgt atgacgcgag agtgtcacgt acggttccgt gagcagccgg
      901 agagtgaaac tctctccggc tgactcgact cgcaggttcc gacagcggtg acgaacatgc
      961 agcggtgttg ttctcgctga tcggcacatg ccgtctgaac aatgtggagc cagaaaaatg
     1021 gctgcgttac gttattgaac atatccagga ctgaccggca aaccgggtac gcgatctgtt
     1081 gccttggaaa gttgatctga cttctcagta aatatcaata tgattctgac gagccgctta
     1141 cctttgagca gagaaagggg agagggatcc cacatccatg agctaggaaa atacaaaaac
     1201 tggctataca acaattcaat atattaggac ttacttgcga ggagaaatat agcaccgctc
     1261 aggcaattcc tgggtattta cttttcttag tttctttact cgggatgttc tgtcatcaga
     1321 aaggcgattc taaatttgta atataatcac tcatattccc acgtaatttc tttagatcaa
     1381 tatattgcac atttttctca aaaaactgat cggaaataag atttgcaaca ttgcttgttg
     1441 tatcattttt aacgcttcta ttcatccctt cacaaagttc gtccattttc tttttgaaat
     1501 aactgcttcc tgatacaaga tgatttatgg aactttgtgc agcattgatg tctagagaaa
     1561 tgtgataatc tttctcaacc tgtttaaata tctgtttacg gagattatcg ccgatttttc
     1621 ggctgtgttc tgcacaaaac ttatcaatac attggtttac cacccgggat acgtagactt
     1681 ttttttcatc atttttccaa tctgtaatat tttcaccgat ttgttctgaa acagagctca
     1741 aaatactagt atttattttg gttgatgata tttttactat ccttttcccc attgtacagc
     1801 ggataatctc atcaaccttt cctgaaaaat atcttttgtg agataaactg attccaaaat
     1861 tattaaaaga tgttccaagc attataatca ctttgtcatg taaaatagta acattgtcat
     1921 tattttagct gattcaaaca attctgtaaa tgctttgagt tctttactcc cttggctcaa
     1981 tgatggaccg tctggaatcc cagagactaa actctctgag aaagagagta tgaaaaaact
     2041 tggggcagtc cctaaatgaa gggaccaaca gcggtaaaat aaccggcatc attcataatg
     2101 atgccctgtt agttgtagtt atgaagattt acgtcattaa aattgctgtt cgtagtgtca
     2161 gtcctatggt ctggcatcag ctgaggatcg tagccgatac atcactggct tcacgacatt
     2221 cgtgttgagg ctattcatga aaactccacg ctgaaaacgc ctttttgtat aaacggtcac
     2281 ggtatgcccg gagccactgt tgctgatgaa ttcgataaaa ccttggcgtt tcttgaagct
     2341 atcgttaatg cggataatga aacaacgatt ggtgagattc gctcttttgc cgacaccctg
     2401 ggcgctgtcc ggttcaatcg caacaaaatc aaccggcagc tgagcaaacc caaccttgcc
     2461 tctctggcgc tggagcatga agtgatttag ctgggacgta gccactgaca gcttctataa
     2521 aagtatgatc ctacccacgt aatatgaaca caggcttaag tgaggttctg gttttcaaat
     2581 tgttcaggac tgagacctcc acaccaactg tgccgtcgtc agcgattgta atcgcacttg
     2641 atataattaa acactgtata tttcatttgt ggagtctcca gtctgagggg gctttatgca
     2701 ttccgtattg ggcactatga tgccagaaat ctgcaaggct ccacaccttc ctgtatttcc
     2761 cttcctctat cacagtgcac tttacttaat agggtgggat gtgttcatta catttattgt
     2821 gttttttatg attgtttttg cgtccagtgt cgttcgtcat gggaaactgg ttctatgggt
     2881 agtatcgctc agtctagtta actgtttgtt tctttttaga aattaagcag atcacacaat
     2941 tcggggagag ctccttctaa gtgcaattct ttgcagctat ttagcacact taaaacaact
     3001 cttgtatttt gtcagaaata atattaaaca tgtcttgttc attattgtta agtctgtctg
     3061 ctatttctgt aagttttatc ccactatgat ggcatatatt tatatatgcc atcatagcct
     3121 cgatattccc tttccctgcg gccagaaata atcctggtaa cccctcatta tctcttacat
     3181 ccaatagttt aatcgtttct tttggtgata aatcaaaagt tttaataaaa tctccataag
     3241 cttgaatcgc agcggaatga ccttcttgaa gagctatgaa caaagcagat tccccagcat
     3301 tatttcgtgc tgcaagaact tctagttttt cctctttggg tatttcggct gccaacagcg
     3361 attcaccgta tttacgcgct gcatcagcat ttccatgcca aatcaatgaa aacaaattat
     3421 ggcggttata ctccttatta ttctttgtcg gaatggatat gctctgtatt ttggccaatt
     3481 ttctgaaaga aacaccacta tatccccccc ctgatttttc ttcattgatg gcgtgggata
     3541 tagcggtatt tgtcacgtta atgatattac gtttcattcc tttattttca ttagcagtat
     3601 tgctgcctat tattaggtgc atatttttgt tgtttgctgg atgtaatcca tagttattta
     3661 ttgacatttt tgttcatcct ttttgctaaa aaaaacaata acctattttt gtaatgtaat
     3721 agatattagt ctattgctaa tctaaaaaaa ccattgccac attgaatggc tatattcacc
     3781 aataaattct ttcgatttcg tatattgaca tatcgtagat atatcttatc cctaagattc
     3841 aataatcgag tccgtttacc attctgtgca agcgccttca ctcagaagtg accgtcaagg
     3901 cgatcaccaa acttgataat aaagcagctc attgccatac gccagtcctt aaggggcgtt
     3961 gtccatttct gtgatgctgc ctagatttaa ctgcctgctc cggcttatct acatctaaat
     4021 atgtgagcct aataccgcta cactttggcc agactatgtt tttctccggg aagtgggcta
     4081 accgtctcca taaagtgacg aacttttttc aacagtggcc atattgaacg gcactgatga
     4141 ttacgggtta ttgtctcatg aagagccggc cacatcactg acagcagtga cttcaggcct
     4201 tcagcaccag acagcctgaa ccagttaatc catcgcccga cagatttagt aatctagggc
     4261 tggtttttct tcagctgttg cggttcgaaa gtgccattac gatcacgcag agtacggatt
     4321 tccagaggtt catctccagt agtgataatc ttcgttaagc aaccattgcg ggaattgctg
     4381 ccagatctaa gctgattttt ctcgcaccca agatgatgag tcatattagc attgagtacg
     4441 gtttcatttt cagcatccaa tcaaactgac tgagatcttc aggatttttg agacttttgg
     4501 ctagttcatt agctaaagcc cgcaacttat tagatgtcaa ctgtttttca ttcataaatt
     4561 caccttcatt tgatatcaaa ttaaatagtt caacatcaga gaattataca aacttatgta
     4621 caggctccta tgatcttcga atcctgaaga ttatagtgaa aataagtttt cacgttgaaa
     4681 tcccacatag ttagtatatg ataaataatc atggatgacc tgattaacct cttggggtag
     4741 tgcttttata gaagaataaa tattctacta atttaataca tcacctaaaa tagtattgtt
     4801 ttttatggtt ggttgaaggt cgtggtgatg atgttagtcc ttttgagaat attccagtgc
     4861 cagatcttac ttataataaa ggggcttggc agtttggata aactattgtt cttattccac
     4921 taatacaaac tttttgtaaa gtatattaaa tatacttcat ttcatactga aatccccgga
     4981 agtattcaat caaacaatta caccataaaa ggaagagggg gccctaatta agttgtcaag
     5041 catgtttatg atacctgcag ggtataaatt ttctggctgc aagcagacac atataaaacg
     5101 tctttattga tcctacccac ataatatgga cacagtcgta agtgaggctc tggttttcaa
     5161 attgttccgg actgagacca ccacaccaac ggtgccgtcg ccagcgattg taatcgcact
     5221 cgatataact aaacactgtt gcccgcacta tttcccgatg gataatagtg ttctccgtgg
     5281 agacattcca ttttcagcga atgaattttc atctgttgct gtatccagtc atacagtgac
     5341 tgcatcagtg gcgcggctct ggcttttctt gccgccagac gctgttctgc tgaacatccc
     5401 cggacttctg cctcgatggc atacagttca ccgatacgca gcagggcttc cgttattctg
     5461 ccggattcgt acaacgcccg gtaaccaccg taagcatcgg cctgaagcac tccgctgtaa
     5521 ccggccagat gattctgtgg atggatacct ttccggtccg gtgagtacgc gaaccagacc
     5581 gccggaggca tttccgaacc ggcgttacgg tcatcacgga catagaccca cagccgggca
     5641 gttcttgttt taccactgcc cggctcctgg accggaacgg ggatatcatc cgcatgaact
     5701 ttaccgggca tcagcacata ctggcgcagg acgtcataca gcggctccag cagttcagca
     5761 acggcaccgg tccagcgacc cagtgtggca cggctcagct ccacgccctg acgacgttat
     5821 atttctgact ggcggtataa cggcagatag cctgcatatt ttccagcgac aacatgggcc
     5881 agaagccccg ctccggcata actgcgtgca atgggttttg aaggcaccgg tgcctgcacg
     5941 atatggtcac accggcaaca ggccagtttc ggacgttgtg tttcgataac cttaaaggcg
     6001 ctgctgataa gctccagctg ctctgacaca tcacatccca gagaactgag ttcgccacca
     6061 caggccgggc agcattcctc ttccggacgg atgacccggg tttcacgggg aagtgaggca
     6121 ggtaacggtt tacgggctga agactggcgc aggggagatg gcagtaccgg gtcatattgc
     6181 tcacccagcg tttccgccat ttcttcctga agtgcgctga ttcgctcctg tgcttccagt
     6241 atctgccgtt cggtttttgc gcgaagtttt tctgagcttt aaccgaactg catgcgctgc
     6301 agtttcgcaa ccagcgcctt cagccggttg atttcggaag cataagccgc cacccgctgt
     6361 gagagcaggc ggttgtattt cgccatctgg cggatggtgt cctgttgcgt ctgcaacagt
     6421 gcccgcaggc gggcattctc atgagcaagt gaggtgtcca tatcctcact ttacaacggg
     6481 ttatatgcgg atgccagcgc gttccgttcg tttcgggtgt ttccagtcga tgccctcaag
     6541 aagcatggat aactgggccg gagtaaggtg caccttgccg tcacgggtga ccggccagac
     6601 gaagcggccc cgctccaggc gtctggtaaa gaggcacagt ccgtcactgt cagcccacaa
     6661 cacttttatc tggtcacccc ggcgtccgcg gaagatgaac agatgcccgg agaacgggtc
     6721 atccttcagg acgttctgaa cttttgaggc caggccgtta aagccatttc gcatatcggt
     6781 gatacctgca accagccaga tacgcgaacc tgcagggaaa gatatcatca gtggctgctc
     6841 ccttttattt cgcggataag tatctgtaat aacgccggcg tcagtttacc tttaagcctg
     6901 agagttccgg ccggcagaac cagctcacag cacagactgt cggacggtgt atttatctgc
     6961 tctggttcct gtgccggagc cgggatttta ttatccggct ccggcgttaa cgtcacggga
     7021 agcagtgcag gcatattttt tccggaaggc agcaggccac ctttccggta ttgatggcgc
     7081 cagttgaaga gcaggttatc gttgattccg ttttcacggg cgatctgcgc cacacaggct
     7141 ccgggctgca gtgactgctc cactaaggcg attttaaatt cataaggaaa attaggccgc
     7201 cgg
//
LOCUS       DAJVSY010000186         7195 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.188, whole genome shotgun sequence.
ACCESSION   DAJVSY010000186 DAJVSY010000000
VERSION     DAJVSY010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7195)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7195)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7195
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.188"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(826..1356)
                     /locus_tag="OQQ19_003692"
                     /pseudo
     CDS             complement(826..1356)
                     /locus_tag="OQQ19_003692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416483.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
     gene            complement(1699..2349)
                     /gene="zinT"
                     /locus_tag="OQQ19_003693"
     CDS             complement(1699..2349)
                     /gene="zinT"
                     /locus_tag="OQQ19_003693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-binding protein ZinT"
                     /protein_id="HCS1805155.1"
                     /translation="MAIRLHKLAVALGVFIVSAPAFSHGHHSHGKPLTEVEQKAANGV
                     FDDANVQNRTLSDWDGVWQSVYPLLQSGKLDPVFQKKADADKTKTFAEIKDYYHKGYA
                     TDIEMIGIEDGIVEFHRNNETTSCKYDYDGYKILTYKSGKKGVRYLFECKDPESKAPK
                     YIQFSDHIIAPRKSSHFHIFMGNDSQQSLLNEMENWPTYYPYQLSSEEVVEEMMSH"
     gene            complement(2606..3241)
                     /gene="msrQ"
                     /locus_tag="OQQ19_003694"
     CDS             complement(2606..3241)
                     /gene="msrQ"
                     /locus_tag="OQQ19_003694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase
                     heme-binding subunit MsrQ"
                     /protein_id="HCS1805156.1"
                     /translation="MRLTAKQVTWLKVSLHLAGLLPFLWLVWAINHGGLGADPVKDIQ
                     HFTGRTALKFLLATLLITPLARYAKQPLLIRTRRLLGLWCFAWATLHLTSYALLELGV
                     NNLALLGKELITRPYLTLGIISWVILLALAFTSTQAMQRKLGKHWQQLHNFVYLVAIL
                     APIHYLWSVKIISPQPLIYAGLAVLLLALRYKKLRSLFNRLRKQVHNKLSV"
     gene            complement(3242..4246)
                     /gene="msrP"
                     /locus_tag="OQQ19_003695"
     CDS             complement(3242..4246)
                     /gene="msrP"
                     /locus_tag="OQQ19_003695"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HCS1805157.1"
                     /translation="MKKNQFLKESDVTAESVFFMKRRQVLKALGISAAALSLPHAAHA
                     DLLSWFKGNDRPPAPAGKPLEFSKPAAWQNNLPLTPVDKVSGYNNFYEFGLDKADPAA
                     NAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFP
                     LHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLT
                     LMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYG
                     FYANVNPHVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYADQVASLYRGLDLRENF
                     "
     gene            complement(4355..4711)
                     /gene="hiuH"
                     /locus_tag="OQQ19_003696"
     CDS             complement(4355..4711)
                     /gene="hiuH"
                     /locus_tag="OQQ19_003696"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HCS1805158.1"
                     /translation="MVYAAQQNILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTA
                     KTDKDGRIKALWPEQTATTGDYRVVFKTGDYFKKQNLESFFPEIPVEFHINKVNEHYH
                     VPLLLSQYGYSTYRGS"
     gene            4882..5553
                     /gene="hprR"
                     /locus_tag="OQQ19_003697"
     CDS             4882..5553
                     /gene="hprR"
                     /locus_tag="OQQ19_003697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707854.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor HprR"
                     /protein_id="HCS1805159.1"
                     /translation="MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD
                     YALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPF
                     SFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLA
                     SRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF
                     VAVKK"
     gene            5553..6911
                     /gene="hprS"
                     /locus_tag="OQQ19_003698"
     CDS             5553..6911
                     /gene="hprS"
                     /locus_tag="OQQ19_003698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     HprS"
                     /protein_id="HCS1805160.1"
                     /translation="MKRLSITVRLTLLFILLLSVAGAGIVWTLYNGLASELKWRDDTT
                     LINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHGDGINKIVNRTNVSDDMLN
                     NIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKIN
                     SIIICIVAIVLCSVLSPLLIRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPL
                     GQALNKMHQALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIA
                     GNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICF
                     KVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNGYLNIDIASLGTK
                     IHEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSASYHYLNKHNVFRITLPQ
                     RN"
     gene            complement(7019..>7195)
                     /locus_tag="OQQ19_003699"
     CDS             complement(7019..>7195)
                     /locus_tag="OQQ19_003699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310732.1"
                     /note="Hsp31 stabilizes early unfolding protein
                     intermediates under severe heat stress; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein deglycase HchA"
                     /protein_id="HCS1805161.1"
                     /translation="HLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANAL
                     GKLAAQEMLAAYAG"
BASE COUNT         2022 a         1484 c         1626 g         2063 t
ORIGIN      
        1 gctgagaaaa aagcgtgctt tcccaatctg gggcaaatca cgtctgaatg acacctgaaa
       61 acaggtggtg gactcaagaa ggcttggaat attcttcttt aatgttatgt aattcattga
      121 tttttcgtgt acgattttaa gacatttttt ccaagaaaaa tttttaactc tttgattttt
      181 cgactctgta tcatcggtct cgaaaaccgg agtaggggca actctaccgg gggggcaaat
      241 ccccctctct ccgccacttt atcaatgact tatctcccga cttcccgcct tacttttcct
      301 aaacagaaca atcgtagaat attcttgaag ggttagatcg tcactgtttt ctgttcgata
      361 ctgtgacatt cagcacttga ttcgctatgg atctgacagg aagctttcga gcgaaaatgt
      421 gcagttattc agtcgttttc ttatcgctca ccattattct tttagacatt catcctatga
      481 aactgccgca aagttggtgg tgggaactga agttgcgtag agaaggggtc aataattgag
      541 tcaaaaaagg aacgcggccg tcagattaaa gccgcgggac aaagtccata atttccaaga
      601 gttgttgaat ttcccagctt ttttgaaagc ctttgtatca tactaacaag taaaaaaggt
      661 ttaaatacca aaattaacct gtatttttga taagtcttac cattgtacga tttacacagt
      721 ttctgctcct ccttgttgat agtggaaagg gtgcattgtg cacttgcgta aacatttatg
      781 acgcgttgat gtccatggtt cacatttcct tgtcagggga tcgacttatt tgcggcgagg
      841 catcattcgt aacagagtat tatctttctg aatgtagtga tgaaagagtg ctgcgccagc
      901 gtgagctgcg attaaaaagt aacctatatt tgcccaggtt tcgtgaatat tttatatcag
      961 tgctttaatt tcgctgtttg gggtaacaaa gggagacaca ttgaaaccaa ggaaactcca
     1021 cgattttcca ctgtaagcca tcaaagcaat ccccagcaga ggaagtgcaa ggaaggttat
     1081 ataaagcatg atgtgcatta gcgaagccgc tttcatttgc caggcaggtg gcggtggcac
     1141 aatagaagga tcactataac ggtgttttat aatcaggcgt gaaaacatta acacccaaac
     1201 gaatataccc gcattgtaat gtgtttctcg catcagcaga taagtactac tacctttagg
     1261 aaaccagcca cggagttcca tcgcggcata ggttattgca acgaaaagca gcgttatcca
     1321 atgtaaataa atttgagttt ttgagaatcg gttcattttt gtagctcctg taatttttac
     1381 agtcaagcta tcccacgaac cttaaaaatt ccttatacag atgtgatttt aagaatttgt
     1441 tatttaaaaa attgatagtg cacattgtaa ccagccaata taagcaatgg cgtgagcaca
     1501 ggtatctttc tctgttggcc gtattgtgta tggaatccgt tattggttaa ctcaatgcgg
     1561 gttagcttat taatatacag acacgtcata gtgatgagcg tgtctgtagc tagcttgcgt
     1621 tcagtggcgt ttgtggatgg accagtggca gttatgatga cttactaaag cggcatcgag
     1681 gcgttatcat gagaatactc aatgagacat catttcctcg accacttctt cgctactcaa
     1741 ctgatatgga taatacgttg gccagttttc catttcattt aataaagatt gctgtgaatc
     1801 attacccata aaaatgtgaa aatgagatga ttttcgtggt gcaattatat gatcgctaaa
     1861 ttgtatatat ttaggggctt tgctttcagg atctttacat tcgaataagt aacgaacgcc
     1921 tttcttgcct gatttatagg tgagtatttt gtatccatcg taatcatatt tacaggatgt
     1981 tgtttcatta tttctatgga attcaacaat gccgtcctca atgccaatca tctcgatatc
     2041 tgttgcataa cctttgtgat aataatcttt aatttcagca aatgttttag ttttatctgc
     2101 atccgctttc ttctgaaaga cggggtcaag tttgccactt tgcagtaaag gataaacgga
     2161 ttgccagacc ccatcccagt cactgagcgt tcggttttgt acattggcat catcaaaaac
     2221 accattagca gctttttgtt cgacctctgt taagggtttg ccgtgtgagt gatgaccatg
     2281 cgaaaaggca ggagcgctaa caataaagac acctaacgca acagccagtt tgtgaagacg
     2341 aatcgccaaa acagtttcct ccagagtcat tgtatatgat gtgtaatgtt atattgtaac
     2401 atatggcaaa atgcaacaac tcttaggaga tgagagcata gttttctcag gtgtacttat
     2461 ctatcttatt gaaataaaat gaattatatt gataatttga ggttgatgac aaacgaaaca
     2521 taatctgatg tgatctgcgt aggccggata gggcgctcgc gccgcatccg gcagggataa
     2581 cgcgtacttt gtcggcaata tgaagttata cagataattt gttgtgaacc tgcttgcgta
     2641 accggttaaa aagggaacgc aacttcttat accgtaaggc taaaagcagt acagccagcc
     2701 cagcgtagat gagcggctgc ggtgaaataa tcttcactga ccacagataa tgtattgggg
     2761 ccaggatcgc gacaagatag acgaaattat gcaactgttg ccagtgcttg ccgagttttc
     2821 gctgcatcgc ctgggttgaa gtaaacgcta aagcaagcaa aataacccag ctgataattc
     2881 ctaacgttaa ataaggccgg gtaattaact ccttgcctaa taacgccaga ttattcacgc
     2941 ccagctccag caatgcgtaa ctggttaaat gcagtgtcgc ccaggcaaag caccataagc
     3001 ctaacaggcg gcgagtgcgt atcaataacg gctgttttgc gtagcgtgcc agaggtgtga
     3061 ttaacaaggt cgccagcaaa aatttcagtg cagtgcgacc ggtaaaatgc tgaatatctt
     3121 tcaccggatc ggcacccagt ccaccgtgat tgatcgccca gaccagccag agaaacggca
     3181 acaatccggc aagatgcagg ctaactttca gccatgtcac ctgttttgct gtcagacgca
     3241 ttcagaaatt ctcccgcaaa tccaggccac gatacagcga tgccacctgg tcggcgtaac
     3301 cattaaacag tagcgttggc tggcgctgaa catcgaggat gccgcctgaa ccaataaatc
     3361 gttcggtagc ctgtgaccag cgcgggtgat caacatgcgg attaacgttg gcgtaaaaac
     3421 cgtattcgtc aggcgctgcc agattccagg tggttggcgg acgctcgcgg gtcagcttaa
     3481 tactgactat cgatttaatc cctttaaagc catatttcca cggcacaatc agtcgtaccg
     3541 gcgcgccatt ttgtggcggt aacgccttgc cataaacacc cacggtcatc agtgtgagcg
     3601 gatgcattgc ttcgtcgaga cgcaatcctt cgacataagg atatttcagc ccgccgccga
     3661 taaagcggtc ctgctggcct ggcatttgtt ccggtgcata aattgtttcg aaagcgacat
     3721 acttcgcatt gctggtgggt tcggcaagcg ccagcaattt gtgcagcgga aaaccaatcc
     3781 acggcaccac catcgaccat gcctccacgc agcgcatacg ataaatacgc tcttccagcg
     3841 ggaagcgacg ggttaaatca tcgtgatcga gggtcaatgg ttttgccact tcgccgctga
     3901 ttttcagtgt ccatggatcg gttttcaggc taccagcatt agcggcggga tcggctttat
     3961 ccagcccgaa ttcatagaag ttgttataac cggagacttt atctactggc gtcagtggca
     4021 ggttattttg ccaggcggca ggcttgctga actccagcgg ttttccggcg ggggcgggcg
     4081 ggcgatcgtt ccctttaaac cagctaagca gatcggcatg cgcagcgtga ggcaaagaaa
     4141 gtgcagctgc actgatgccc agtgctttta acacctgccg acgcttcata aagaataccg
     4201 actcggccgt aacatctgat tcttttaaaa attgattctt tttcataagc catcacactt
     4261 ttttgtcgtt agccagcaag agccgtttac tgttaatctg tcagggagtg tcctccctaa
     4321 cagtagcaga gatctgcttt tacatattta tgcattaact gccacgatag gttgaatacc
     4381 catattggct aagtaataaa ggcacatgat aatgctcgtt cactttatta atatgaaatt
     4441 caacggggat ctcagggaag aaactttcaa gattttgttt cttgaaatag tccccggttt
     4501 taaatacgac acggtaatcg cccgtagttg cagtttgctc gggccacagt gctttaattc
     4561 gtccatcctt atctgttttg gcggtattaa gttgtaacca gccgttatcc gccttctttt
     4621 caagagtgac tgtcacgtca gcagcgggtt ttccggtttg ctggttcaaa atgtgcacgc
     4681 taagaatgtt ttgttgtgcg gcataaacca aagaaggtaa tgaaaatgct gcaaataacg
     4741 ctttaacatg tttatatcct tgtcatgtga atgagttttg aggatagcga aaaagcggcc
     4801 agggtaacct tacagcagca ttacaatttt gtaatgaacc aggctgtttc tataacatat
     4861 gatttatggc atattatttt catgaagatt ttacttattg aagataatca aaggacccag
     4921 gagtgggtaa cgcaggggct ttccgaagcg ggttatgtca ttgatgccgt ttctgatggc
     4981 agagatgggc tttatcttgc gctgaaggat gattatgcat tgataattct ggatattatg
     5041 cttccgggta tggatggctg gcagatctta caaacgttaa gaacagcaaa gcaaacccct
     5101 gttatttgcc ttactgcaag ggattctgtc gatgacagag tcagagggct ggacagtgga
     5161 gcaaatgatt atctggtaaa acctttttca ttttctgagt tgctggcaag ggttcgggca
     5221 caattaaggc aacatcacgc tttgaattca acattagaaa tcagtggctt aagaatggac
     5281 tctgtaagtc aaagtgtgag cagggacaat atcagtatta cactgacgcg caaggagttt
     5341 cagttacttt ggctactggc ctccagagct ggcgaaatta tacccagaac ggttattgcg
     5401 agtgaaattt ggggaatcaa ctttgatagt gataccaata cggtggatgt cgccattcgc
     5461 aggctccgcg caaaagttga tgatcctttt cctgaaaagc taatcgccac aatccggggg
     5521 atgggctatt cattcgtagc ggtaaaaaaa taatgaaaag attgtctata accgtccgtt
     5581 taaccttgct ttttatattg ctgctgtctg ttgctggcgc tggaattgtc tggactctct
     5641 ataatggcct ggcaagtgag ttgaaatggc gcgatgatac aacactcatt aaccggacag
     5701 cacagatcaa gcagttgtta attgatgggg taaatccaga tacgttacct gtatacttta
     5761 accggatgat ggatgttagt caggatatct tgatcattca tggtgatggc atcaataaaa
     5821 ttgttaaccg gacaaatgtc agtgatgaca tgttaaataa catacctgct agtgagacaa
     5881 tcagcgcagc tggcatttac agaagcatta ttaatgatac tgagattgat gctttacgaa
     5941 ttaatattga tgaagtttcg ccatcattaa cggttactgt ggctaaattg gcttcagcta
     6001 gacataacat gcttgaacag tataaaatta atagcattat aatttgcatt gtcgccattg
     6061 tactttgctc agtattaagt ccgctgttaa tcagaacggg attacgagag atcaaaaagt
     6121 tgagtggtgt aacggaagcg ctgaattata acgatagccg agagcctgtt gaggttagcg
     6181 cattaccgag agaactaaaa cctcttgggc aggcgttgaa taaaatgcat caagccttag
     6241 tcaaagattt tgaacgccta agtcaatttg ctgacgatct cgctcatgaa cttagaacgc
     6301 ccattaatgc attactgggt cagaatcagg ttacgctcag tcaaaccaga agtatcgctg
     6361 aatatcaaaa aacaattgcc ggtaacattg aagagttgga aaatatttcg cggttaacag
     6421 agaacatact gtttcttgcc cgggcagata aaaacaatgt tttggtgaaa ctggactcgc
     6481 tttctctcaa taaggaagtc gaaaatttgt tggattatct tgaatatctt tcagacgaga
     6541 aagagatttg ctttaaggtc gagtgcaatc agcaaatctt tgcggataaa attttactgc
     6601 aacgaatgtt atcgaatctt attgttaatg ccattagata ttcaccagaa aaatcgcgta
     6661 ttcatataac cagttttctt gataccaacg gctatcttaa tattgatatc gccagtcttg
     6721 gaacgaaaat acatgagcct gaaaaactct tccgtagatt ttggcgggga gataattcgc
     6781 gtcattccgt aggtcaggga cttggtcttt ctttagtcaa agcgattgcc gaattgcatg
     6841 ggggaagtgc ttcatatcac tatctcaata agcataatgt gttccgaatt acgttaccgc
     6901 aaagaaatta acatagggct tcagtacgcc ataaattaac cgtgaaaaaa cgcagccacg
     6961 tcgtgagtac taacgcggct gcgattaatt atgcgcttac attcaaacgt aacagggatt
     7021 aacccgcgta agctgccagc atttcctgcg ccgccagttt acccaacgca ttcgctgcga
     7081 aaggactgtc gccggtgaga agtttacggt ccttatgtac tcgcccggtg atgtcgtcat
     7141 taatgatgtt catgcccatt ttcttcagct cttcgccgaa gtaccaggtg agatg
//
LOCUS       DAJVSY010000187         7141 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.189, whole genome shotgun sequence.
ACCESSION   DAJVSY010000187 DAJVSY010000000
VERSION     DAJVSY010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7141)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7141)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7141
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.189"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            132..197
                     /gene="yobI"
                     /locus_tag="OQQ19_003700"
     CDS             132..197
                     /gene="yobI"
                     /locus_tag="OQQ19_003700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response small protein YobI"
                     /protein_id="HCS1805162.1"
                     /translation="MYIFITHFFTEYVIFKYLLPI"
     gene            336..947
                     /gene="ruvA"
                     /locus_tag="OQQ19_003701"
     CDS             336..947
                     /gene="ruvA"
                     /locus_tag="OQQ19_003701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012131997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HCS1805163.1"
                     /translation="MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQE
                     AIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAV
                     EREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE
                     QEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL"
     gene            956..1966
                     /gene="ruvB"
                     /locus_tag="OQQ19_003702"
     CDS             956..1966
                     /gene="ruvB"
                     /locus_tag="OQQ19_003702"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HCS1805164.1"
                     /translation="MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIF
                     IKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLT
                     NLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
                     TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARG
                     TPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKF
                     FGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE
                     MP"
     gene            complement(2016..2801)
                     /gene="znuB"
                     /locus_tag="OQQ19_003703"
     CDS             complement(2016..2801)
                     /gene="znuB"
                     /locus_tag="OQQ19_003703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter permease subunit ZnuB"
                     /protein_id="HCS1805165.1"
                     /translation="MIELLFPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLL
                     GVAFGLLLDVNPFYAVIAVTLLLAGGLVWLEKHPQLALDTLLGIMAHSALSLGLVVVS
                     LMSNIRVDLMAYLFGDLLAVTPEDLIAIAIGVVIVVAILFWQWRNLLSMTISPDLAFV
                     DGVKLQRVKLLLMLVTALTIGVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAV
                     LVGMVAVTGGLTFSAFYDTPAGPSVVLCAALLFIISMMKKQAS"
     gene            complement(2798..3553)
                     /gene="znuC"
                     /locus_tag="OQQ19_003704"
     CDS             complement(2798..3553)
                     /gene="znuC"
                     /locus_tag="OQQ19_003704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter ATP-binding protein ZnuC"
                     /protein_id="HCS1805166.1"
                     /translation="MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKS
                     TLVRVVLGLVTPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTHKEDIL
                     PALKRVQAGHLINAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALY
                     DLIDQLRRELDCGVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMFG
                     PRGAEQLGIYRHHHNHRHDLQGRIVLRRGNDRS"
     gene            3632..4564
                     /gene="znuA"
                     /locus_tag="OQQ19_003705"
     CDS             3632..4564
                     /gene="znuA"
                     /locus_tag="OQQ19_003705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     ZnuA"
                     /protein_id="HCS1805167.1"
                     /translation="MLHKKTLLFAALSAALWGGATQAADAAVVASLKPVGFIASAIAD
                     GVTETEVLLPDGASEHDYSLRPSDVKRLQNADLVVWVGPEMEAFMQKPVSKLLGAKQV
                     TIAQLEDVKLLLMKSIHGDDDDHDHAEKSEEDHHHGDFNMHLWLSPEIARATAVAIHG
                     KLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFG
                     LTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMG
                     TLDPLGTNIKLGKTSYSEFLSQLANQYASCLKGD"
     gene            4580..5902
                     /gene="mepM"
                     /locus_tag="OQQ19_003706"
     CDS             4580..5902
                     /gene="mepM"
                     /locus_tag="OQQ19_003706"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein DD-endopeptidase MepM"
                     /protein_id="HCS1805168.1"
                     /translation="MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRD
                     ATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVST
                     GDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRE
                     TRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQ
                     WQMDFRKLKKGDEFAVLMSREMLDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRN
                     GTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGE
                     VVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGP
                     HLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD"
     gene            6022..6993
                     /gene="lpxM"
                     /locus_tag="OQQ19_003707"
                     /gene_synonym="msbB"
     CDS             6022..6993
                     /gene="lpxM"
                     /locus_tag="OQQ19_003707"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416369.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HCS1805169.1"
                     /translation="METKKNNSEYIPEFDKSFRHPRYWGAWLGVAAMVGIALTPPKFR
                     DPILARLGRFAGRLGKSSRRRALINLSLCFPERSEAEREAIVDEMFATAPQAMAMMAE
                     LAIRGPEKIQPRVDWQGLQIIEEMRRNNEKVIFLVPHGWAVDIPAMLMASQGQKMAAM
                     FHNQGNPVFDYVWNTVRRRFGGRLHARNDGIKPFIQSVRQGYWGYYLPDQDHGPEHSE
                     FVDFFATYKATLPAIGRLMKVCRARVVPLFPIYDGKTHRLTIQVRPPMDDLLEADDHT
                     IARRMNEEVEIFVGPRPEQYTWILKLLKTRRPGEIQPYKRKDLYPIK"
BASE COUNT         1884 a         1727 c         1827 g         1703 t
ORIGIN      
        1 cacctataca tgtaaagacg atatctccaa tttcatattc agcagggtaa ttaatattca
       61 cgttgtcatt ccattgaaat agatacgaat atacgtaata gcataaaaaa attatttttt
      121 caggaggtgc aatgtatatt tttattacgc atttcttcac tgaatacgta atatttaaat
      181 atttgcttcc aatataacct gtagaataaa tcatactgcg ccatttttca gttcatcgag
      241 acacctcgca agttttcttc atccttcgct ggatatctat ccagcatttt tttatcatac
      301 agcattatct ttgattcatt acgcaggagc gtcatgtgat aggcagactc agaggcatca
      361 tcattgaaaa acaacccccg ctggtgttaa ttgaagtggg cggcgtaggc tatgaagtgc
      421 atatgccgat gacctgtttt tatgaactcc ctgaagcggg tcaggaagcg atcgttttca
      481 cccactttgt ggtgcgtgaa gacgcgcaac tgctgtacgg ttttaacaat aaacaagagc
      541 gcacattgtt caaagagttg atcaaaacca acggcgtcgg cccgaagttg gcgctggcga
      601 tcctctccgg aatgtcagcg cagcagttcg ttaatgccgt tgaacgtgaa gaagtggggg
      661 cactggtgaa actgccgggt attggcaaaa aaaccgccga acgcttgatt gttgaaatga
      721 aagaccgatt taaaggtttg catggcgatc tgtttacccc tgccgccgac ctggtactca
      781 catcacctgc cagcccggcg accgacgatg ctgaacagga agcggttgcc gcgctggtgg
      841 cgctgggcta taaaccacaa gaagcaagcc gcatggtgag caaaatcgct cgccctgacg
      901 ccagcagtga aacattaatt cgcgaagccc tacgcgccgc gttatgaggt aaaggatgat
      961 tgaagcagac cgtctgattt ctgccggtac cactttgccg gaagatgtag cagatcgcgc
     1021 cattcgccct aaattactgg aagagtatgt tggtcagccg caggttcgtt cacagatgga
     1081 gattttcatc aaagcagcga aactgcgcgg cgatgccctc gatcatttgt tgatttttgg
     1141 tcctccgggg ttgggtaaaa ctacgcttgc caacattgtc gccaatgaaa tgggcgttaa
     1201 tttacgcacg acttctggtc cggtgctgga aaaggcgggc gatctggcag cgatgctcac
     1261 taaccttgaa ccgcatgacg tgctgtttat tgatgagatc caccgtttat cgccagttgt
     1321 tgaagaagtg ctgtacccgg caatggaaga ctaccaactg gatatcatga ttggtgaagg
     1381 tccggcggca cgctccatta aaattgattt gccgccgttt accctgattg gcgcaaccac
     1441 gcgcgcaggt tcgctgacat caccgttgcg cgaccgtttt ggtattgtgc aacgtctgga
     1501 gttttatcag gtgccggatc tgcaatatat cgttagtcgc agtgcacgct ttatggggct
     1561 tgagatgagt gatgacggcg cgctggaagt tgctcgtcgc gctcgcggta cgccacgtat
     1621 tgccaaccgt ctgctgcgtc gagtgcgtga tttcgccgaa gtgaagcacg atggcaccat
     1681 ctcggcagat atcgctgctc aggcgctgga catgttgaat gtcgatgctg aaggtttcga
     1741 ttatatggac cgcaaattgt tgctggcggt aatcgataag ttctttggtg ggccggtagg
     1801 tctggataac ctggcggcgg ctattggcga agaacgtgaa accattgagg atgtgctgga
     1861 accttatttg attcagcaag gctttttgca gcgtacaccg cgtgggcgta tggcgacgac
     1921 gcgggcgtgg aatcactttg gcataacgcc gccagaaatg ccgtaagtcg gattggtcgc
     1981 tcgcgacgca tccgacaaat gtgttcagcg atagattagc tggcctgctt tttcatcata
     2041 ctgataataa ataacagtgc tgcacatagc accaccgacg gacccgccgg cgtatcgtaa
     2101 aatgcggaaa aggttaaacc gcccgttacg gcaaccatcc ccaccaacac agcgacacct
     2161 gccatctgtt ccggcgtgcg ggcaaagcga cgtgcagtag cagcaggaat aatcagcagt
     2221 gaagtaataa tcaacgcgcc aacaaatttc atcgctacac caatcgtcaa tgccgtcacc
     2281 agcatcaaca acaatttcac gcgctgtaat ttcacaccat caacaaacgc cagatccggg
     2341 ctaatcgtca tcgacagcaa attgcgccat tgccagaaca aaatagccac cacgatgacc
     2401 acgccaatcg caatagcgat gagatcttct ggcgtcactg ccagcaaatc accgaacagg
     2461 taagccatca aatcaacacg aatgttagac atcagactaa cgaccaccag gcccagcgac
     2521 agggcactgt gcgccataat ccctaataac gtgtcaagcg ccagctgtgg atgtttctcc
     2581 agccatacca gaccgcccgc caggagcagc gtaacggcaa ttaccgcata gaatggattc
     2641 acgtccagca acaaaccaaa cgcgacgcca agtaatgagg catgagccag cgtatcaccg
     2701 aaataagaca tacgacgcca gactacaaac gaacccagcg gacccgcggc acaggcgagc
     2761 atgatcccgg ctaaccaacc gggaaataat aattcaatca tgagcgatca tttccccgac
     2821 gcaaaacaat tcgtccctgt aaatcgtgac gatgattatg atgatggcga tagataccca
     2881 gttgttcagc accacgagga ccaaacatag aaataaactc cggatgtagg gaaacaactt
     2941 ccggtgtgcc ggaacaacaa atgtggtgat tcagacacag cacttcatcg gtttttgcca
     3001 ttaccagatg cagatcgtga gagaccatta aaacgccaca atccagttcg cgacgcaact
     3061 ggtcaataag gtcatataac gccacctggc catttacatc cacgccttga gtgggttcat
     3121 ccagcactaa taattgcggt cgatttaaca atgctcgcgc taacagtaca cgctgtgttt
     3181 cgccaccaga gagcttttgc atcggtgcgt taatcagatg cccggcctgg acacgtttca
     3241 gtgcaggcaa aatatcttct ttatgtgtgc cagggcgtaa gcgtaaaaaa cggtttacgg
     3301 tcagtggcaa cgtggtgtcg agatacagct tctgcggtac atagccgatg cgtagttttc
     3361 cgttgcgctt gataacccct tcatcgggtg ttaccagccc gagcactacc cgtaccagtg
     3421 tcgacttacc tgcgccattt ggcccaagta aagtcaaaat ttttccaggt ttaagttcca
     3481 gcgacacatc agagaggacg cggcgttggc caaaagaaac tgagacattt tccagggaaa
     3541 ccagacttgt catgttaatt ttagtcttgc agtagtcatg agatgttata atatcacact
     3601 tctcatattc attacgatga ttggtcgcat tatgttacat aaaaaaacgc ttcttttcgc
     3661 agcattatcc gccgctctct ggggaggtgc aacacaggcc gcagatgccg ccgttgtcgc
     3721 ttcgcttaaa cccgttgggt tcatcgcttc tgccattgct gatggtgtaa cagaaacgga
     3781 ggttttactg cctgacggcg cttcagaaca tgattattca ctgcgtccat cggatgtaaa
     3841 acgcttacag aacgcggact tagtcgtttg ggttggcccg gagatggaag cgtttatgca
     3901 aaaaccggta agcaaattac taggagcgaa gcaggtaacg attgcgcagc ttgaagatgt
     3961 gaaactgcta ctgatgaaaa gtattcacgg cgatgatgat gatcacgacc acgcggaaaa
     4021 aagtgaagaa gatcaccatc acggcgattt caacatgcat ctttggcttt ccccagagat
     4081 agcgcgggct acagcggttg caatccatgg aaaattagtg gaacttatgc cgcaaagtcg
     4141 agccaaactt gacgccaacc tgaaggattt tgaggcacaa ttagcctcaa ccgaaacgca
     4201 ggttggtaac gagctcgcgc cgctcaaggg gaaaggttat ttcgtttttc acgatgctta
     4261 cggctatttc gaaaaacagt tcggactgac accgcttggt cattttaccg ttaaccctga
     4321 gattcaacct ggcgcgcagc gtttacatga aataagaaca cagttggttg agcaaaaagc
     4381 aacctgcgtt tttgctgagc cacagttcag gccagcggtc gttgagagcg tcgcacgagg
     4441 gacatccgtt cgtatgggaa cgttggatcc cttggggacg aatatcaaac tgggtaaaac
     4501 aagctattca gaattcctga gtcaattagc caaccagtat gcgagctgcc tgaaaggaga
     4561 ttaatgagga agtgattacg tgcaacagat agcccgctct gtcgccctgg cgtttaataa
     4621 tttaccgcga ccacaccgcg ttatgttggg gtcgctcacc gttcttactc tggccgtcgc
     4681 tgtctggcgg ccctatgttt atcaccgcga tgccacgcca attgtcaaaa ccattgagct
     4741 ggaacagaac gaaattcgtt cgctcttacc tgaagccagt gagccgattg atcaagctgc
     4801 acaagaagat gaagccattc cccaggacga actggatgac aaaatcgccg gtgaagcggg
     4861 cgtgcatgaa tatgttgttt ccactggcga tacgctaagc agcattctca atcagtatgg
     4921 tattgatatg ggtgatatca cccaactggc tgcggccgac aaagaattgc gtaacctgaa
     4981 aatcggtcaa caactctcct ggacattaac cgcggacggc gaactgcagc gcctcacctg
     5041 ggaagtgtct cgtcgtgaaa cccgaaccta tgaccgtact gccgctaacg gttttaaaat
     5101 gaccagcgaa atgcagcaag gagagtgggt taacaatctg ctgaaaggta ccgtcggagg
     5161 gagctttgtt gccagcgcca gaaacgccgg tttaaccagc gccgaagtga gcgcagtgat
     5221 taaagccatg cagtggcaaa tggatttccg caaactgaaa aaaggcgatg aatttgcggt
     5281 gttaatgtct cgagagatgc ttgatggtaa acgtgagcaa agccagctgc tgggcgtacg
     5341 tttgcgttca gaaggtaaag attattacgc aatccgcgct gaggatggca aattctacga
     5401 ccgtaacggt actggtctgg cgaaaggatt cttgcgattc ccgacggcga aacagttccg
     5461 tatctcgtct aactttaacc cgcgtcgtac taatccggtg accggtcgcg ttgcaccaca
     5521 cagaggtgtt gatttcgcca tgccgcaggg tacgccagtg ctttcagtgg gtgacggtga
     5581 agtggtggtt gccaaacgca gtggcgcagc aggttattat gtggctattc gtcatggtcg
     5641 cagctacacc acgcgttata tgcacttgcg caagattctg gtgaaaccgg gacagaaggt
     5701 gaaacgtggc gaccgtatcg cgctttccgg taataccgga cgttcaaccg ggccgcatct
     5761 gcactatgaa gtatggataa accagcaggc cgtaaacccg ctgacggcaa aactgccgcg
     5821 taccgaaggg ctgaccggct ccgatcgtcg cgaattcctg gcgcaggcca aagagattgt
     5881 gccgcagcta cggtttgatt aattaacatc cattcgcagc cggtacgcag tcagtaccgg
     5941 ctttttttat ttggtgcggg gcaagttgcg ccgctacact atcaccagat tgatttttgc
     6001 cttatccgaa actggaaaag catggaaacg aaaaaaaata atagcgaata cattcctgag
     6061 tttgataaat cctttcgcca cccgcgctac tggggagcat ggctgggcgt agcagcgatg
     6121 gtgggtatcg ctttaacgcc gccaaagttc cgtgatccca ttctggcacg gctgggacgt
     6181 tttgccggac gactgggaaa aagctcacgc cgtcgtgcgt taatcaatct gtcgctctgc
     6241 tttccagaac gtagtgaagc tgaacgcgaa gcgattgttg atgagatgtt tgccaccgcg
     6301 ccgcaagcga tggcaatgat ggctgagttg gcaatacgcg gaccggagaa aattcagccg
     6361 cgcgttgact ggcaagggct gcagatcatc gaagagatga ggcgtaataa cgagaaagtt
     6421 atctttctgg tgccgcacgg ttgggccgtc gatattcctg ccatgctgat ggcctcgcaa
     6481 gggcagaaaa tggcagcgat gttccataat cagggcaacc cggtttttga ttatgtctgg
     6541 aacacggtgc gtcgtcgctt tggcggtcgt ctgcatgcga gaaatgacgg tattaaacca
     6601 ttcatccagt cggtacgtca ggggtactgg ggatattatt tacccgatca ggatcatggc
     6661 ccagagcaca gcgaatttgt ggatttcttt gccacctata aagcgacgtt gcccgcgatt
     6721 ggtcgtttga tgaaagtgtg ccgtgcgcgc gttgtaccgc tgtttccgat ttatgatggc
     6781 aagacgcatc gtctgacgat tcaggtgcgc ccaccgatgg atgatctgtt agaggcggat
     6841 gatcatacga ttgcgcggcg gatgaatgaa gaagtcgaga tttttgttgg tccgcgacca
     6901 gaacaataca cctggatact aaaattgctg aaaactcgca gaccgggcga aatccaaccg
     6961 tataagcgta aagatcttta tcctatcaaa taaaaaaaag cctctcaaat tattgagagg
     7021 ctgtactcga taaaaaatct caatgagtgt tcccactatt ttgagttttt aggttagtac
     7081 gctattgagt taatcgtagc gtgataattt caaaaggttt gaactcaaga ttgcaatatt
     7141 g
//
LOCUS       DAJVSY010000188         7123 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.190, whole genome shotgun sequence.
ACCESSION   DAJVSY010000188 DAJVSY010000000
VERSION     DAJVSY010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7123)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7123)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7123
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.190"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..649
                     /locus_tag="OQQ19_003708"
     CDS             <1..649
                     /locus_tag="OQQ19_003708"
                     /EC_number="4.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709490.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tryptophanase"
                     /protein_id="HCS1805170.1"
                     /translation="TYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVV
                     QEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGH
                     AAFVDAGKLLPNIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAE
                     LLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYEPKVLRHFTAKLKEV"
     gene            740..1987
                     /gene="tnaB"
                     /locus_tag="OQQ19_003709"
     CDS             740..1987
                     /gene="tnaB"
                     /locus_tag="OQQ19_003709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity tryptophan permease TnaB"
                     /protein_id="HCS1805171.1"
                     /translation="MTDQAEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAF
                     ILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLYILTY
                     AYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKI
                     ISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIIC
                     YGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLG
                     TKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNSHGGRFKTVLLTFLPP
                     ALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIV
                     ILFGITVILCWFGNVFNVLPKFG"
     gene            2119..3294
                     /gene="mdtL"
                     /locus_tag="OQQ19_003710"
     CDS             2119..3294
                     /gene="mdtL"
                     /locus_tag="OQQ19_003710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtL"
                     /protein_id="HCS1805172.1"
                     /translation="MSRFLICSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAF
                     SVYLAGMAAAMLFAGKVADRSGRKPVAIPGAALFIIASVFCSLAETSTLFLAGRFLQG
                     LGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLF
                     WAMAMMGIAVLMLSLFILKETRPASPAASDKPRENSESLLNRFFLSRVVITTLSVSVI
                     LTFVNTSPVLLMEIMGFERGEYATIMALTAGVSMTVSFSTPFALGIFKPRTLMITSQV
                     LFLAAGITLAVSPSHAVSLFGITLICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIA
                     QVCGSSLWIWLAAVVGIGAWNMLIGILIACSIVSLLLIMFVAPGRPVAAHEEIHHHA"
     gene            3269..4228
                     /gene="yidZ"
                     /locus_tag="OQQ19_003711"
     CDS             3269..4228
                     /gene="yidZ"
                     /locus_tag="OQQ19_003711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator YidZ"
                     /protein_id="HCS1805173.1"
                     /translation="MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLA
                     KLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEWMQMSNLLLDKPHHQTPRGLKFELA
                     AESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSR
                     ELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHETWNLDTFLRYPHISICWEQSDTWAL
                     DNVLQELGRERTIAMSLPEFEQSLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPL
                     PFDESQQKKLEVPFTLLWHKRNSHNPKIVWLRETIKNLYASMA"
     gene            4385..5134
                     /locus_tag="OQQ19_003712"
     CDS             4385..5134
                     /locus_tag="OQQ19_003712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709485.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HCS1805174.1"
                     /translation="MATHFARGILTEGHLISVRLPSQCHQEARNIPPHRQSRFLASRG
                     LLAELMFMLYGIGELPEIVTLPKGKPVFSDKNLPSFSISYAGNMVGVALTTEGECGLD
                     MELQRATRGFHSPHAPDNHTFSSNESLWISKQNDPNEARAQLITLRRSVLKLTGDVLN
                     DDPRDLQLLPIAGRLKCAHVNHVEALCDAEDVLVWSVAVTPAIEKLSVWELDGKHSWK
                     SLPDIHSRANNPTSRMMRFAQLSTVKSFSPN"
     gene            5156..5722
                     /gene="yieF"
                     /locus_tag="OQQ19_003713"
                     /gene_synonym="chrR"
     CDS             5156..5722
                     /gene="yieF"
                     /locus_tag="OQQ19_003713"
                     /gene_synonym="chrR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I chromate reductase YieF"
                     /protein_id="HCS1805175.1"
                     /translation="MSEKLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIA
                     DIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLP
                     DQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVDRQT
                     GEVIDQGTLDHLTGQLTAFGEFIQRVKI"
     gene            complement(5776..7113)
                     /gene="adeP"
                     /locus_tag="OQQ19_003714"
     CDS             complement(5776..7113)
                     /gene="adeP"
                     /locus_tag="OQQ19_003714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine permease AdeP"
                     /protein_id="HCS1805176.1"
                     /translation="MSQQHTTQASGQGMLERVFKLREHGTTARTEVIAGFTTFLTMVY
                     IVFVNPQILGVAGMDTSAVFVTTCLIAAFGSIMMGLFANLPVALAPAMGLNAFFAFVV
                     VQAMGLPWQIGMGAIFWGAVGLLLLTIFRVRYWMIANIPVSLRVGITSGIGLFIGMMG
                     LKNAGVIVANSETLVSIGNLTSHSVLLGILGFFIIAILASRNIHAAVLVSIVVTTLLG
                     WMLGDVHYNGIVSAPPSVMTVVGHVDLAGSFNLGLAGVIFSFMLVNLFDSSGTLIGVT
                     DKAGLADEKGKFPRMKQALYVDSISSVTGSFIGTSSVTAYIESSSGVSVGGRTGLTAV
                     VVGLLFLLVIFLSPLAGMVPGYAAAGALIYVGVLMTSSLARVNWQDLTESVPAFITAV
                     MMPFSFSITEGIALGFISYCVMKIGTGRLRDLSPCVIIVALLFILKIVFIDAH"
BASE COUNT         1693 a         1823 c         1803 g         1804 t
ORIGIN      
        1 aacctacaaa tatgccgata tgctggcgat gtccgccaag aaagatgcga tggtgccgat
       61 gggcggcttg ctgtgcatga aagacgacag cttctttgat gtgtacaccg agtgcagaac
      121 cctttgcgtg gtgcaggaag gcttcccgac atatggcggc ctggaaggcg gcgcgatgga
      181 gcgtctggcg gtaggtctgt atgacggcat gaatctcgac tggctggctt atcgtatcgc
      241 gcaggtacag tatctggtcg atggtctgga agagattggc gttgtctgcc agcaggcggg
      301 cggtcacgcg gcattcgttg atgccggtaa actgctgccg aatatcccgg cagaccagtt
      361 cccggcacag gcgctggcgt gcgagctgta taaagtcgcc ggtatccgtg cggtagaaat
      421 tggctctttc ctgttaggcc gcgatccgaa aaccggtaaa caactgccat gcccggctga
      481 actgctgcgt ttaaccattc cgcgcgcaac atatactcaa acacatatgg acttcattat
      541 tgaagccttt aaacatgtga aagagaacgc ggcgaatatt aaaggattaa cctttaccta
      601 cgaaccaaaa gtattgcgtc acttcaccgc aaaactgaaa gaagtttaat taatactaca
      661 gagtggctat aaggatgtta gccactctct taccctacat cctcaataac aaaaatagcc
      721 ttcctctaaa ggtggcatca tgactgatca agctgaaaaa aagcactctg cattttgggg
      781 tgttatggtt atagcaggta cagtaattgg tggaggtatg tttgctttac ctgttgatct
      841 tgccggtgcc tggtttttct ggggtgcctt tatccttatc attgcctggt tttcaatgct
      901 tcattccggg ttattgttat tagaagcaaa tttaaattat cctgtcggct ccagttttaa
      961 caccatcacc aaagatttaa tcggtaacac ctggaacatt atcagcggta ttaccgttgc
     1021 cttcgttctc tatatcctca cttatgccta tatctctgct aatggtgcga tcattagtga
     1081 aacgatatca atgaatttgg gctatcacgc taatccacgt attgtcggga tctgcacagc
     1141 cattttcgtt gccagcgtat tgtggataag ttcgttagcc gccagtcgca ttacctcatt
     1201 gttcctcggg ctgaagatta tctcctttgt gatcgtgttt ggttctttct tcttccaggt
     1261 cgattactcc atcctgcgcg atgccaccag caccactgcg ggaacgtctt acttcccgta
     1321 tatctttatg gctttgccgg tgtgtctggc gtcatttggt ttccacggca atattcccag
     1381 cctgattatt tgctatggaa aacgcaaaga taagttaatc aaaagcgtgg tatttggttc
     1441 gctgctggcg ctggtgattt atctcttctg gctctattgc acgatgggga atattccgcg
     1501 cgaaagcttt aaggcgataa tctcctcagg cggcaacgtt gattcgctgg tgaaatcgtt
     1561 cctcggcacc aaacagcacg gcattatcga gttttgcctg ctggtgttct ctaacttagc
     1621 tgttgccagt tcgttctttg gtgtcacgct ggggttgttc gattatctgg cggacctgtt
     1681 taagattgat aactcccacg gcgggcgttt caaaaccgtg ctgttaacct tcctgccacc
     1741 tgcgttgttg tatctgatct tcccgaacgg ctttatttac gggatcggcg gtgccgggct
     1801 gtgcgccacc atctgggcgg tcattattcc cgcagtgctt gcaatcaaag ctcgcaagaa
     1861 gtttcccaat cagatgttca cggtctgggg cggcaatctt attccggcga ttgtcattct
     1921 ctttggtata accgtgattt tgtgctggtt cggcaacgtc tttaacgtgt tacctaaatt
     1981 tggctaaatc cttcaagaag ccagccattc gctggcttct tgcctctcag gaaatcactt
     2041 atgtccaaat ggcaactcgc ctgatcctcc ttcaccacgt atgctttgcg tcaccttact
     2101 atcaggacgc tttagcccat gtcccgcttt ttgatttgta gttttgccct ggttttactt
     2161 tatcccgccg ggattgatat gtacctcgtt ggtttaccgc gcatcgccgc cgatctcaat
     2221 gccagcgaag cgcagttgca tattgcgttc tccgtatatc tggcggggat ggcagctgcg
     2281 atgttatttg ccggtaaagt ggccgatcgt tcagggagaa agccggtcgc catacccggc
     2341 gcggcgctat ttattattgc ctcggtgttc tgttcactgg ctgaaaccag cacgttattt
     2401 cttgcaggcc gatttctaca ggggttgggc gcaggctgtt gttacgtagt ggcgttcgcc
     2461 attttgcgcg acacgctgga tgatcgacgt cgggctaaag tgctgtcatt actcaacggt
     2521 attacctgca tcattccggt gttagcgcca gtgctcggac atctgattat gcttaaattc
     2581 ccgtggcaga gtctgttctg ggcgatggca atgatgggca tcgcggtact gatgttgtct
     2641 ttgtttattt taaaagaaac gcgcccagcg tcccccgctg cttcggacaa accacgagaa
     2701 aatagcgagt cgctgcttaa tcggtttttc ctcagccgtg ttgttatcac caccctcagc
     2761 gtttcggtga tcctcacttt cgtcaataca tcgccggtat tgctgatgga aatcatgggt
     2821 tttgagcgcg gagaatacgc caccattatg gcgttgaccg ctggcgtcag catgaccgtt
     2881 tcattctcca cgccatttgc gctgggaatt tttaagccac gtacgttgat gatcacctcg
     2941 caggtgttat tccttgcagc ggggatcacc cttgccgttt caccttccca tgcggtttct
     3001 ctgtttggta tcacactgat ttgcgccggt ttctcggtag gttttggcgt agcgatgagt
     3061 caggcgttag gaccattttc attacgcgcg ggcgtagcca gctcgacctt aggtattgcg
     3121 caggtttgcg gttcgtcact gtggatttgg ctggcagcgg tggttggtat cggcgcatgg
     3181 aatatgctga tcgggattct gattgcctgt agcatagtga gcctgttgct gattatgttc
     3241 gtcgcgcctg gacgccccgt tgccgctcat gaagaaatcc atcaccacgc ttgatctcaa
     3301 tctgctgctc tgtctgcaac tgctgatgca ggagcgcagc gtgaccaaag cggcgaagcg
     3361 gatgaacgtg accccttcag cggtgagtaa gtcgctggca aagttaagag cgtggtttga
     3421 cgacccgctc tttgtgaact caccgctggg gctgtcgccc acaccgctaa tggtcagcat
     3481 ggagcaaaat ctggcggaat ggatgcaaat gagcaatctg ctgctggata aaccgcacca
     3541 ccagacaccg cgcggcctga agtttgagtt ggcggcggaa tcgccgctga tgatgatcat
     3601 gcttaatgcg ctgtcgaaac ggatctacca acgttacccg caggcgacca tcaaactacg
     3661 taactgggat tacgattcct tagatgccat tactcgtggt gaagtggata ttggtttttc
     3721 cggtcgcgaa agccatcctc gctcgcggga gctgttaagc tcgctaccgt tagccattga
     3781 ttatgaagtg ctgtttagtg atgtaccctg cgtctggtta cgcaaagatc atccggcact
     3841 gcatgaaacg tggaatctgg acaccttttt acgttatccg catatcagca tttgctggga
     3901 acagagcgac acctgggcgc tggacaatgt gttacaggag ctggggcgcg aacgcacgat
     3961 tgctatgagc ctgccggaat ttgagcagtc actgtttatg gcagcgcaac ccgacaatct
     4021 gctactggcg accgcgccgc gctactgtca gtactacaat caactccatc aactgccgtt
     4081 ggttgctctt cctctcccgt ttgacgaaag ccagcaaaaa aagctggaag ttccttttac
     4141 cctgctgtgg cataaacgga acagtcataa tccgaagatc gtctggttac gggaaaccat
     4201 taaaaacctt tacgcgtcga tggcataacc gaatcgtatg aaacgcgacc caatttcaca
     4261 ataaaatgta aaaaagttgt aataagcttg tctgaatcga acttttagcc gctttagtct
     4321 gtccatcatt ccagtaaatg attactctta tattcataat ggaccattaa gcatggagcg
     4381 aaaaatggcg actcactttg cccgagggat tttaacggaa ggacatctga tttctgttcg
     4441 tctcccctcc cagtgtcatc aagaagcccg aaacattccc cctcatcgtc aaagccgttt
     4501 tctggcgtcc agaggtttac tcgcagaact gatgttcatg ctgtatggca ttggcgaatt
     4561 gccggaaatc gtcaccctgc cgaaaggtaa accggttttc agtgataaaa atttgccttc
     4621 gttttctatt tcctatgccg ggaatatggt tggcgtggcg ttaacaaccg aaggtgaatg
     4681 tggcctcgat atggaactac agcgtgcgac gcgcgggttt catagcccac acgcgcccga
     4741 taaccacacc ttttccagca atgaatcgct atggatcagt aaacaaaacg atcctaacga
     4801 agcgcgggcg cagctcatca cgctgcgccg aagcgtgcta aaactaaccg gtgatgtttt
     4861 gaatgacgat ccgcgcgatc tgcagctgct gcccattgcc ggacgcctga aatgtgctca
     4921 tgtaaatcat gtagaagcgt tatgcgacgc ggaggacgtg ctggtgtggt ccgtggcggt
     4981 cacgcccgcg attgaaaagc tcagtgtctg ggagttagat ggcaaacaca gctggaaaag
     5041 cctgccggat attcacagcc gcgccaacaa tcctaccagc cggatgatgc gttttgccca
     5101 gctctctacc gtgaagtctt tttcgccaaa ttgatagaca accacaggag tcattatgtc
     5161 tgaaaaattg caggtggtta cgttactggg gagcctgcgc aaaggctcat ttaatggcat
     5221 ggttgcacgt accctgccga aaattgctcc ggcgagcatg gaagtcaatg cgttaccttc
     5281 cattgccgac attcccctgt atgacgctga cgtacagcag gaagaaggtt ttccagcaac
     5341 ggttgaagct ctggcggaac agatccgtca ggctgacggt gtggtgatcg tcacgccgga
     5401 atataactac tcggtaccgg gtgggctgaa aaatgccatc gactggcttt cccgcctgcc
     5461 ggatcaaccg ctggccggta aaccggtgtt gattcagacc agctcaatgg gcgtgattgg
     5521 cggcgcgcgc tgtcagtatc acctgcgcca gattctggtt ttcctcgatg caatggtgat
     5581 gaacaagccg gaatttatgg gcggcgtgat tcagaacaaa gttgatcggc aaaccggaga
     5641 agtgattgat cagggtacgc tggaccacct gaccgggcaa ttgaccgcat ttggtgagtt
     5701 tattcagcga gttaagatct aaataaaaaa cccgccagta atcatgcatg gcgggttttt
     5761 aatgcgctat cgattttaat gagcgtcgat aaatacaatc ttcaggataa acagcagcgc
     5821 aacgatgatt acgcacgggc taaggtcacg cagacgcccg gtaccaatct tcatcacgca
     5881 gtaggagata aagcccagcg caataccttc ggtaatcgaa aagctgaacg gcatcatcac
     5941 ggcggtaata aacgccggaa cagattcagt aagatcctgc cagttcacgc gagcaagact
     6001 tgaggtcatc aacacgccaa cgtagatcaa cgcgccagct gcagcgtagc ctggcaccat
     6061 tcccgccagc ggcgacagaa agataaccag caggaacagc agaccaacaa ccactgccgt
     6121 cagaccggta cgaccgccaa ccgatacgcc ggaagaggac tcaatataag ccgtaacgga
     6181 agaagtaccg ataaacgaac cggtcacgga agagatactg tcgacataca gcgcttgctt
     6241 catgcgcggg aatttcccct tctcatccgc cagacctgct ttatcggtca cgccaatcag
     6301 cgtaccggag gagtcaaaca agttgaccaa catgaaagag aaaatcaccc ctgccagccc
     6361 gaggttaaac gacccggcta aatctacatg acccacaact gtcattacgc tcggcggcgc
     6421 agaaacgatg ccattgtagt gcacatcacc cagcatccag cccagcagcg tcgtcaccac
     6481 gatagaaacc agcaccgctg cgtgaatgtt gcgcgaggcc agaatagcaa tgatgaagaa
     6541 gccgaggata cccagaagta cgctgtgaga agtcagatta ccgatgctca ccagcgtttc
     6601 cgagttagcg acaatcacac ctgcgttttt cagccccatc atgccgataa acaggccgat
     6661 accgctggta atacccacac gcagacttac cggaatgtta gcaatcatcc agtaacgaac
     6721 gcggaaaatg gtcaaaagaa gcagtccgac agcgccccag aagattgcgc ccataccgat
     6781 ctgccacggc agccccattg cctggacaac cacaaaagcg aaaaaggcgt taagccccat
     6841 cgcaggagcc agcgccaccg gaaggtttgc aaacaatccc atcataatgc taccgaaagc
     6901 agcaatcaga caggttgtta cgaagacggc actggtgtcc atgccagcaa cgcccagaat
     6961 ttgtgggtta acaaaaacga tgtaaaccat cgtcaggaag gtggtaaaac cggcgatcac
     7021 ttcggtccgt gccgtcgtgc catgttcgcg cagtttaaac acgcgttcca gcatcccctg
     7081 gccagaagcc tgggttgtgt gttgttgact cattatctat ttc
//
LOCUS       DAJVSY010000189         7058 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.191, whole genome shotgun sequence.
ACCESSION   DAJVSY010000189 DAJVSY010000000
VERSION     DAJVSY010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7058
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.191"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..297)
                     /locus_tag="OQQ19_003715"
     CDS             complement(<1..297)
                     /locus_tag="OQQ19_003715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
                     /protein_id="HCS1805177.1"
                     /translation="MISDAQKAANAAGAIATGLLSLIIPVPLTTVQWANKHYYLPKES
                     SYTPGRWETLPFQVGIMNCMGNDLIRTVNLIKSARVGYTKMLLGVEAYFIEHKSR"
     gene            complement(269..817)
                     /locus_tag="OQQ19_003716"
     CDS             complement(269..817)
                     /locus_tag="OQQ19_003716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000867575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HCS1805178.1"
                     /translation="MKVNKKRLAEIFNVDPRTIERWQSQGLPCVSKGSKGIESVFDTA
                     MAIQWYAQRETDIENEKLRKELADLRAAAESDLQPGTIDYERYRLTKAQADAQELKNA
                     REDGVVLETELFTFILQRVAQEISGILVRVPLTLQRKYPDISPSHLDVVKTEIAKASN
                     VAAKAGENVGGWIDDFRRTEGS"
     gene            1228..2295
                     /locus_tag="OQQ19_003717"
     CDS             1228..2295
                     /locus_tag="OQQ19_003717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001383880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta family protein"
                     /protein_id="HCS1805179.1"
                     /translation="MSQHQYYPQLKWKPAEYESLMLLDQTTLSGFTPIITIPDIDWDY
                     ENECYKKSLSSYLSDFGINLAASWKANRPVLLDVKYLDKHGSSRHHPLDMCIQDARVN
                     GKEIIPVVSPAYSTNYIHAVQRNLINGLAISITPQTWHQFTSLVNHLNIHPSLIDVII
                     DFGDIQNATDSLKQQALSMVNTLSGQAPWRNLILSSTAYPASQAGIPQHQVHHIPRHE
                     YDLWMYVVQNFSNGRTPSFSDYPTASSTITSVDPRFMSQYVSVRYSNDTSWIFVKGTA
                     VKGNGWGQTKNLCTTLVSSPEYQVFGSKFSWGDDYIYQRSLGANKSGGSKEWRKVAHT
                     HHITLVVRQLYWLAQTQPAKP"
     gene            complement(2237..2857)
                     /locus_tag="OQQ19_003718"
     CDS             complement(2237..2857)
                     /locus_tag="OQQ19_003718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000654791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sce7726 family protein"
                     /protein_id="HCS1805180.1"
                     /translation="MKDQDVRFAVHHKLLKESHLDPDCLVVDEFSISLGASRADIAVI
                     NGVIHGYELKSEYDSLERLPLQIKHYSSVMDKVTLVVAEKHLEGALKLIPGWWGVKTV
                     SVGPKGAILIKHMRGEKLNRNHDTLMLAQLLWKDECIDVLERWGYSKGIKSKPRFELW
                     NIIAENIPIANLRPEVRTALKKRVGWKVKAWQAESAPTNKAVSRLT"
     gene            complement(3274..3732)
                     /locus_tag="OQQ19_003719"
     CDS             complement(3274..3732)
                     /locus_tag="OQQ19_003719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009453323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysis protein"
                     /protein_id="HCS1805181.1"
                     /translation="MSRVAAIIYTLVICTIVCLSWAVNHYRDNAITYKAQRDKNAREL
                     KLANVVITDMQMRQRDVAELDARYTKELADANATIESLRADVSAGRKRLQVAATCAKS
                     TTGASSMGDGESPRLTADAELNYYRLRSGIDKITAQVNYLQEYIRTQCLK"
     gene            complement(3729..4262)
                     /locus_tag="OQQ19_003720"
     CDS             complement(3729..4262)
                     /locus_tag="OQQ19_003720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706619.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HCS1805182.1"
                     /translation="MSAKIKYGLSAAVLALIAAGASAPQILDQFLDEKEGNHTTAYRD
                     GSGIWTICRGATMVDGKPVIPGMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQK
                     AGIASFCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDGGRDCRIRSNNCYGQ
                     VIRRDQESALACWGIDQ"
     gene            complement(4318..4632)
                     /locus_tag="OQQ19_003721"
     CDS             complement(4318..4632)
                     /locus_tag="OQQ19_003721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000192453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdfR family protein"
                     /protein_id="HCS1805183.1"
                     /translation="MTQNYELIVKGIRNFENKVTVTLALRDKKRFDGEIFDLDISLDR
                     VEGAALEFYEAAARRSIRQVFMDVAAGLCEGDELLPETRPCSEARYTIKINSSDNSIT
                     GC"
     gene            complement(4637..4852)
                     /locus_tag="OQQ19_003722"
     CDS             complement(4637..4852)
                     /locus_tag="OQQ19_003722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II holin family protein"
                     /protein_id="HCS1805184.1"
                     /translation="MYQMEKITTGVSYTTSAVGTGYWFLQLLDRVSPSQWAAIGVLGS
                     LLFGLLTYLTNLYFKIREDRRKAARGE"
     gene            complement(5003..6859)
                     /locus_tag="OQQ19_003723"
     CDS             complement(5003..6859)
                     /locus_tag="OQQ19_003723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1737 domain-containing protein"
                     /protein_id="HCS1805185.1"
                     /translation="MAFKHYDVVRAASPSDLAEKLTHKLKEGWQPFGSPVAITPYTLM
                     QAIAAEGDVVVSGATEPEWYYVIVLAGQSNAMAYGEGLPLPDSYDAPHPRIKQLARRN
                     TVTPGGEVCVFNDIIPADHCLHDVQDMSTINHPRADLSKGQYGCVGQGLHIAKKLLPY
                     IPNNAGILLVPCCRGGSAFTQGTEGTFSESTGASQDSARWGVGKPLYQDLLFRTKAAL
                     QKNPKNVLLAICWMQGEFDMTNASYAQQPAAFLAMVQQFRADLAGLAAQCHGGSPASV
                     PWICGDTTYAWKQEHGTQYEVVYGAYKGKESQQIYFVPFMTDGSGVNTPTNNPSEDPD
                     IAGSGYYGSASRTNKNWVSSNRPTHFSSWARRGIIPDRMATAILNVAGRTLAFISGKA
                     PEIKPSPGGDTPSGPSDGDTSVRTVSLLPTAGEAAAQGWTITGGSVALEDGVFKVTKQ
                     SNKPWSLMHPVDDAVSLLTRGGRLSCKFRLSGALTNNQFGLGIYLYTDVALPDVVAMT
                     GTGNPFLMSFFTQTTDGKLNLMHHRKAGNTKLGEFGNYSNDWQTLELVFTAGSATVTP
                     KLNGVAGPAFQVIKDSLTLGLNALTLTDITKNAAYGVEIESLVLEINAPASS"
BASE COUNT         1855 a         1821 c         1504 g         1878 t
ORIGIN      
        1 gcgtgattta tgctcaataa aataagcctc cactcccagc aacatctttg tataaccaac
       61 acgggcagat ttaatcaggt taacagtgcg aatcaaatcg ttgcccatac agttcatgat
      121 gccaacctga aacggcagtg tttcccaccg ccccggggta taagacgact ctttaggaag
      181 gtaataatgt ttattggccc actgaactgt cgtcagtgga acaggaataa tgagagataa
      241 aagccctgta gctatcgcac cggctgcatt agctgccttc tgtgcgtctg aaatcatcga
      301 tccacccgcc cacgttttca ccggccttag ctgcaacatt ggaggctttc gcgatttcag
      361 ttttcaccac atcaaggtgt gatggtgaaa tgtccggata tttacgctgt aatgtcaacg
      421 gcacacgcac aagtatcccc gaaatctcct gtgccacacg ttgcagaatg aaggtaaaca
      481 gttcagtttc cagcaccact ccgtcttcac gggcattttt cagttcctgc gcatctgcct
      541 gcgcttttgt gagccggtag cgttcatagt caatggtgcc gggttgtaaa tctgactccg
      601 ctgccgcacg caaatcggcc agttctttgc ggagcttttc gttttcgata tcagtttccc
      661 tctgcgcata ccactgaatt gccatggcag tatcaaatac agattcaatg cccttactgc
      721 ctttggagac gcaagggagc ccctgagact gccagcgttc aatcgtccgc gggtccacgt
      781 taaaaatttc ggcaagcctc tttttattaa ccttcataga acaacccatt atcaaataca
      841 aggcccgaca tgaaaacgcc agaaaaaggc attttcggac actttcatgt cggacattta
      901 tgaatgcaat attaaaaaaa acaaaaagtt atattcgaga agtaccgaca cgatttaccc
      961 tgaaaaattt tcataaatag tgaaaaaccg cgaggtcgcc gccccgtaac gatctggatc
     1021 accggaaagg acccgccaac gactttcgcg tgcaggcatt aaaaattttg cagttccatg
     1081 cctagttgaa acctcgattt ctataacatc caattttgta aatttagata tagctcaact
     1141 tttcccaatg ttttcaagtg tataaaaaca attggcgtta cgccataaca ctatacttag
     1201 gataagtaaa gattttaagg agttttaatg agtcaacatc aatattatcc acagctgaaa
     1261 tggaagcctg ctgaatatga atctctgatg cttttagatc aaactacgct ctctggtttt
     1321 actccgatca ttaccattcc agacatagac tgggattatg aaaacgaatg ctacaagaag
     1381 agtttgagtt cttacttatc tgacttcggt attaaccttg cggcatcctg gaaagccaat
     1441 cgtcctgttt tgctggatgt taaatattta gataaacatg gttcgagccg ccatcatcct
     1501 ctagatatgt gtatccaaga tgctagagta aatggtaagg aaattatccc tgttgtttct
     1561 cccgcatatt caacaaacta tatacatgct gttcaacgca acttaatcaa tgggctcgct
     1621 atatctatca ccccccagac atggcaccaa ttcacaagtc tggttaacca cttaaatatt
     1681 catcctagtt taattgatgt aatcattgat tttggagata ttcaaaacgc aactgatagt
     1741 ttaaaacaac aagcattaag catggtcaac acattatcag gccaagctcc gtggagaaac
     1801 ttgattttat cttcaaccgc atacccggca tcacaggcag ggataccgca acatcaagtt
     1861 catcatattc cgcgccatga atacgatctt tggatgtacg tagtacagaa ttttagcaat
     1921 ggaagaacgc caagttttag tgattatccc accgctagct ctaccattac gagcgtagac
     1981 ccacgcttca tgtctcagta tgtctcagtg agatattcga acgatacctc atggatcttt
     2041 gtaaaaggta ccgcagttaa aggaaatgga tggggccaaa ctaaaaactt atgtactacc
     2101 cttgttagtt cgccagagta tcaagtcttt ggctccaaat ttagttgggg ggatgattac
     2161 atttaccaaa gatcattagg cgctaacaaa tctggcggct ctaaagaatg gcgtaaagtt
     2221 gcacatacgc accatattac gttagtcgtg agacagcttt attggttggc gcagactcag
     2281 cctgccaagc cttaactttc cagcctacgc gtttctttaa ggctgttctg acttcaggcc
     2341 tgagattcgc tattggaata ttttccgcaa taatattcca taactcaaat cggggcttgc
     2401 ttttgattcc tttggaatag ccccatcgtt caagtacgtc gatacattca tctttccaaa
     2461 gcaattgagc gagcatcaat gtgtcatggt ttcgattaag cttttctcca cgcatgtgct
     2521 ttataagaat ggcgcctttt ggcccaacag aaaccgtttt aacgccccac caacctggga
     2581 ttaactttaa tgctccctca aggtgtttct cagctacgac aagagtaacc ttgtccatta
     2641 cagaagaata atgcttgatt tgaagaggca aacgctccaa agagtcatat tcacttttga
     2701 gctcgtaccc gtgtataaca ccatttatta cagcaatgtc tgctctactg gcgccaaggg
     2761 atatggaaaa ttcatcgacc acaaggcagt ctggatctaa atgcgattct ttcaaaagct
     2821 tatgatgcac cgcgaaccta acatcttgat ctttcatgac ttctccttac tccctccgtt
     2881 attgaattat agcgcactgc attttactgc atttgagaga tttgaccact tcaatcacaa
     2941 aatgcttatc tgcagcaaca agattcatag ccatacgact atggtgatta ccttttgtct
     3001 ggaaaactga ccattccacg aagatcagat aggtctatag aatcttggtt tgtcatagcg
     3061 ttcgtcttac tttgagatga acctttgctg cataggagat cagcccgtca aggctcacca
     3121 gcactaactg actactcaaa ggctcattcc aaagggtttg gttcgacgtg gttgagtgcg
     3181 ctgcggtgcg cggtgaaata cctgtacaaa aatgccccgc atctgcgagg cattttcctg
     3241 aaagtcacgt attaaatttc agtgaaatta aaattatttt aagcactgcg tcctgatgta
     3301 ctcctgcagg tagttgacct gagcggttat cttgtcgatt ccacttcgga gacggtaata
     3361 attgagttca gcatctgctg taagtcttgg gctttctcca tcgcccatgc tgctggctcc
     3421 ggtcgttgac tttgcacagg tggcggcgac ttgcaggcgc ttacgcccag cagaaacatc
     3481 agcacgaaga ctttcgatag tcgcgttagc atcagcaagc tcctttgtgt atctggcgtc
     3541 gagttctgct acatcacgct gacgcatctg catgtcagta attaccacgt tcgccagctt
     3601 cagttctctg gcatttttgt cgcgctgggc tttgtaggta atggcgttat cgcggtaatg
     3661 attaacagcc catgacaggc agacgatggt gcagataacc agagtataaa taatcgctgc
     3721 gactctgctc actgatctat cccccaacag gctaatgcgc tttcctggtc acgacgaata
     3781 acctgtccat agcagttatt tgaacgtatg cggcaatcgc gcccaccatc ttttatccac
     3841 cagcgaatcg cctcgcatgc gcccttacga tcaccggcat tcagccgctt ataaaacgtc
     3901 gacgggaaac acttaccggg gccaatgtta tagggacaga atgacgctat acccgctttc
     3961 tgtggttcgg tcagtggtac tttaatattg cgctccaccc atgccagcgc cttatcacgt
     4021 tcaatagcgt taacctggtc gcatttttcc ttcgacagct tcattcccgg tatgacgggc
     4081 ttaccatcca ccattgtggc accacgacag atggtccata taccggaacc atcgcggtat
     4141 gccgtagtgt ggttaccctc tttttcatcc agaaactggt caagtatttg aggagcagac
     4201 gcgcctgcag caatcagcgc cagaacagca gctgacaggc cgtatttgat ttttgcgctc
     4261 atggatattt atcaggatgc taccaatgaa agatactgga aagccaactg caaaaagcta
     4321 acaacccgta atcgagttat cagaactgtt aatttttatg gtataccgcg cctctgaaca
     4381 ggggcgcgtt tctggcaaca gctcgtcccc ttcacataac ccggcagcaa catccatgaa
     4441 gacctgtctg atgctccttc tggctgctgc ctcataaaac tccagcgcgg caccttcaac
     4501 acggtccagc gagatgtcca ggtcaaaaat ttcaccgtca aagcgttttt tgtcccgtaa
     4561 cgctaaagtt accgtaactt tattctcaaa attgcggatc cctttcacaa tcagttcata
     4621 gttttgagtc attgaattac tctccccgtg cagccttacg acggtcctct ctgattttga
     4681 aatacaggtt agtcagatat gtcagcagcc caaacagcag actccccagc acgcctattg
     4741 ccgcccactg agacggggaa accctgtcca gcaactgcag gaaccagtag cccgttccca
     4801 ccgctgacgt ggtgtatgac acacctgttg tgattttttc catctggtac ataccccgtc
     4861 tcccgttatc cggaagctga caacaataaa aaaagccacc agttaagtac tgatggctct
     4921 gataactcat gcaggcatct cagacgaccc actgacacta ccggtgagtt taacgatacc
     4981 ttccatttga ctggctcact ttttatgatg atgctggtgc atttatctcc agcaccagac
     5041 tttctatctc aacgccatac gctgcatttt tggtaatatc cgtcagcgtc agcgcattca
     5101 gccccagtgt cagactgtct tttatgacct ggaatgccgg gccagccact ccattcagtt
     5161 tcggagtaac cgtggcactg ccggcggtga acaccagctc cagcgtctgc cagtcgttac
     5221 tgtaattccc gaactcgccc aactttgtgt ttcctgcttt cctgtgatgc atcagattca
     5281 gtttgccgtc tgtggtctgg gtgaagaacg acatcaggaa cgggttacca gtcccggtca
     5341 tcgccacgac gtcaggtaac gctacatcgg tatacagata aattcccaga ccgaactggt
     5401 tgttggtcag tgcgcctgac agtcgaaact tacagctcag tctgccaccc cgtgtcagca
     5461 gggagactgc gtcatccacc ggatgcatca gggaccaagg tttattgctc tgcttggtaa
     5521 ccttaaacac accatcttcc agcgcaacac tgccgccagt gatggtccag ccctgcgcag
     5581 cagcctctcc ggctgtcggc agcagggaga ctgtacgaac ggatgtgtca ccatcagacg
     5641 gccccgatgg agtgtcgccg ccgggcgagg gtttgatttc cggtgcctta ccactaatga
     5701 aggctaaggt gcgaccggct acgttcagaa tagcagttgc catacgatcg ggaataatgc
     5761 cacgacgcgc ccatgagctg aaatgcgtcg ggcgatttga tgatacccag tttttgttcg
     5821 ttcgggatgc cgaaccgtaa taaccagacc cggcaatatc aggatcttct gacgggttgt
     5881 ttgtcggtgt attaactccg ctaccatcgg tcataaaggg aacaaaataa atctgctggg
     5941 attctttacc tttatatgca ccatatacca cttcatattg cgtaccgtgt tcttgtttcc
     6001 acgcgtatgt cgtgtcgcca caaatccagg ggactgatgc cggacttcca ccgtgacact
     6061 gcgccgccag cccggcaagg tcagcacgga actgctgtac cattgcaaga aatgctgctg
     6121 gctgctgggc gtaactggca ttcgtcatat cgaattcccc ctgcatccag catatcgcca
     6181 gcaaaacgtt tttcggattt ttctgcaatg ctgccttcgt gcggaaaagc agatcctgat
     6241 ataacggctt acccactccc cagcgagccg aatcctgact ggcccccgtg gactcgctga
     6301 atgtcccctc cgtgccctgg gtgaatgccg aaccaccacg acagcatggt accagcagga
     6361 tccccgcgtt attagggata tacggaagca gttttttggc aatatgtaag ccctgtccga
     6421 cacagccgta ctgccctttg ctcaggtcag cccggggatg attaatcgta ctcatatcct
     6481 gaacatcatg cagacaatgg tcagcaggaa tgatgtcgtt aaatacgcat acttcaccac
     6541 cgggagtcac tgtgttacga cgggccagtt gcttaatgcg cggatggggc gcatcgtatg
     6601 aatccggaag cggaagccct tcaccgtaag ccatggcatt ggattgcccg gccagtacga
     6661 tgacgtagta ccactccggc tcagttgcac cactgacgac cacatcacct tctgctgcaa
     6721 tcgcctgcat cagggtataa ggggttatgg ccaccggact accaaacggc tgccagccct
     6781 ctttcagttt atgtgtcagc ttttccgcaa gatctgacgg cgacgccgcc ctgacaacat
     6841 catagtgttt aaatgccatg gttctttcca ccatctgaaa aatgattctt taaaatacct
     6901 gacatgtaat acagaaaaaa cacaaaacca taccttaaat aaaaacctca tcatcaagca
     6961 gatatgcatg gataaactac aagacgagat ataaaccacc ctgcatttaa ataaacaata
     7021 aacaacatca gaaaaataat tctgctctat ggtttaca
//
LOCUS       DAJVSY010000190         7056 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.192, whole genome shotgun sequence.
ACCESSION   DAJVSY010000190 DAJVSY010000000
VERSION     DAJVSY010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7056
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.192"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            40..246
                     /locus_tag="OQQ19_003724"
                     /pseudo
     CDS             40..246
                     /locus_tag="OQQ19_003724"
                     /inference="COORDINATES: protein motif:HMM:TIGR02601.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            991..2904
                     /locus_tag="OQQ19_003725"
                     /pseudo
     CDS             991..2904
                     /locus_tag="OQQ19_003725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001306477.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(3032..3754)
                     /gene="ubiG"
                     /locus_tag="OQQ19_003726"
     CDS             complement(3032..3754)
                     /gene="ubiG"
                     /locus_tag="OQQ19_003726"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HCS1805186.1"
                     /translation="MNAEKSPENHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLR
                     LGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESG
                     IQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPSGDVFFSTL
                     NRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNP
                     LTNTFKLGPGVDVNYMLHTQNK"
     gene            3901..6528
                     /gene="gyrA"
                     /locus_tag="OQQ19_003727"
     CDS             3901..6528
                     /gene="gyrA"
                     /locus_tag="OQQ19_003727"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HCS1805187.1"
                     /translation="MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPV
                     HRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYML
                     VDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP
                     TKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFP
                     TAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEK
                     IAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINM
                     VALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP
                     IIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL
                     TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL
                     VREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKG
                     KSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLP
                     LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDEL
                     IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG
                     DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMI
                     TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA
                     EGDDEIAPEVDVDDEPEEE"
     gene            6677..>7056
                     /locus_tag="OQQ19_003728"
     CDS             6677..>7056
                     /locus_tag="OQQ19_003728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416733.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2138 family protein"
                     /protein_id="HCS1805188.1"
                     /translation="MSGEKKAKGWRFYGLVGFGAIVLLSAGVWALQYAGSGPEKTLSP
                     LVMHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIE
                     GSIRRIVYEHDLTLKDKLFSSLLD"
BASE COUNT         1694 a         1742 c         2012 g         1608 t
ORIGIN      
        1 ggctatggag atggtccttc cactgcggcg ggtggcttta tgtatctcgg cttaagtgaa
       61 gttacctttg atattgccga cggaaaaacg ctggttatcg gcaatacaga gaatgacgga
      121 gctgttgact ctattgctgg taccgggttg atcaccaaaa caggttccgg cgatctggta
      181 cttaatgcag ataacaatga ctttactggc gagatgcaga ttgaaaacgg tgaagttacc
      241 ctgggccgca gcaactccct gatgaatgtc ggcgatacgc attgccagga cgatccgcaa
      301 gactgctacg gtctgacgat agggagtatt gataagtacc agaatcaggc agagctaaac
      361 gttggctcca cccaacaaac ctttgtgcac tcattgacgg gctttcagaa tggcacttta
      421 aatatcgatg ctggtggcaa tgttactgtt aatcaaggta gttttgctgg caccatcgaa
      481 ggtgctggtc agctcaccat tgcgcaaaac ggcagctacg tgctgtcggg ggcgcagtcg
      541 atggcgctaa ccggcgatat agtcgttgat gatggtgcgg tgctttcgct ggaaggcgac
      601 gcggcagatc tcgccgctct ccaggacgat ccgcagtcga tcgtgttaaa cggcggtgtg
      661 ctcgatctct ctgatttctc cacctggcag agcggcacat catacaatga tggccttgaa
      721 gtcagtggca gcagcggaac ggttatcggc agtcaggatg tggtagatct tgcaggtggc
      781 gacaatttgc atatccgcgg cgacgggaaa gatggcgtct acgtggtggt cgatgcgagc
      841 gacgggcagg taagtctggc aaacaataat agttatttgg gcacaacaca aatcgcctcc
      901 ggtacgctga tggtgagcga caactcgcag cttggagata cccactataa ccgccaggtt
      961 atctttaccg ataagcaaca agaaagcgtg atggagatta ctgccaatgt cgatactcgc
     1021 tctacgacga ctgagcatgg gcgtgatatt gaaatgcgcg ccgacggtga agtggcagtt
     1081 gatgcggggg tagacacgca gtggggcgca ctgatggctg acagcagcgg gcagcatcag
     1141 gatgagggta gcacatttac taaaacgggg gcgggtacgc tggagctgac cgccagcggt
     1201 acaacgcagt cggcagtacg tgtcgaagaa ggcaccctga aaggcgatgt tgcggatatc
     1261 tttccttatg cttcgtcact gtgggtcggt gatggggcga cgttcgttac tggcgcggat
     1321 caggatattc agtctatcga tgctacttcc agcggcacta tcgatatcag cgatggtacg
     1381 gttttgcgtc tgaccgggca ggatacttcc gtcgccctta atgcctcatt gtttaacggc
     1441 gatgggacgc tggtgaatgc taccgatggc gtgacgttga caggtgagct taataccaac
     1501 cttgaaactg acagcctgac ctatcttgcc gacgtgacgg ttaatggtga tctgaccaat
     1561 acgtccggtg cggttagcct gcaaaatggc gtcgctggcg atacgctaac ggtaaacggt
     1621 gattatactg gcggcggtac gctactgttc gacagcgaat taaacggcga tgactcggta
     1681 agcgatcaat tggtgatgaa cggtaatact gctggcaaca caactgtggt ggttaactcc
     1741 attacaggga ttggtgagcc gacatcgaca ggcattaaag tggttgattt cgcagctgat
     1801 cccacgcagt ttcaaaacaa tgcacagttc agtctggctg gcagtggcta cgtcaacatg
     1861 ggagcgtatg actacacgct agtggaagat aacaacgact ggtatctgcg atcgcaagaa
     1921 gtaacgccgc catcgccacc tgatccagac ccggacccaa cacccgatcc tgacccaaca
     1981 cccgatccaa tccccgctta ccagccggtg ctgaatgcca aagttggcgg ttatctcaat
     2041 aacctgcggg cggcaaatca ggcgtttatg atggagcgac gcgatcacgc tggtggcgat
     2101 ggtcagacgc tgaatttacg tgttatcggc ggacgttatc attacacggc ggcagggcaa
     2161 ctggctcagc aggaagacac ttctacggtg cagcttagcg gcggcttgtt tagcgggcgc
     2221 tggggcacgg atggcgagtg gatgcttggg gcggttggtg gctacagtga taatcagggc
     2281 gacagccgct cgaatatgac cggaactcgc gccgataacc agaaccacgg ttatgccgtt
     2341 gggctgacct caagctggta tcagcacggt aattagaagc agggggcctg gctggatagc
     2401 tggctgcaat acgcgtggtt taacaatgat gtttccgaac atgaagatgg cgtggatcgt
     2461 taccattcgt cggggattat cgcctcgctg gaagccgggt atcagtggtt accggggcgt
     2521 ggtgtggtga ttgaaccgca ggcgcaggtg atttatcagg acgtgcagca ggatgatttt
     2581 accgccgcta accatgcgcg cgtgtcacaa tcgcaggggg atgatattca gacgcggctg
     2641 ggtttacaca gcgaatggcg taccgcggtt ggtgtcacac caacattaga tctgaattat
     2701 tatcacgatc cccatgcgac ggaaattgaa gaagatggca gcactatcag tgacgatgcg
     2761 gtgaagcgac ggggtgaaat aaaagtggga gtcacgggca atatcagtca gcgagtgtcc
     2821 ctgcgcggca gcgtggcgtg gcagaaaggg agtgatgatt ttgcccagac ggcagggttt
     2881 ttgtcgatga cggtgaaatg gtaatcactg tctagtcggc acggttgccg gatgcggcgt
     2941 aaacgcctta tccggcctac ggggagcatt tgtaggcctg ataagacgcg gcaagcgtcg
     3001 catcaggcat tggctcggcc aaacaacaac ctcacttatt ctgcgtgtgc agcatatagt
     3061 tcacatccac gccggggccg agtttaaaag tattagtgag cgggttgtaa tgtagcccag
     3121 ttatatgtcg ctctttaagg cttgtctgat ctacccagcc aagcagttct gccggtttaa
     3181 taaacttctt cacatcatgc gtgcctttgg gcaccatgcg caaaatatat tccgcgccaa
     3241 ccaccgccat cagccatgac ttgccgttgc ggttaagcgt cgagaaaaag acatcgccgc
     3301 ttggtttcac cagttgcgca caggctctga ccactgactg cggatcgggg acgtgctcca
     3361 gcatctccat gcaggtcacc acatcatact gcccggcatg ttttgccgcg tgctcttcca
     3421 cggtttcctg cacataatcc acctgaatgc cgctttccag cgcgtgcagt tttgccacct
     3481 gcaatggctc aaagcccata tccagaccgg tcaccgtcgc gccttcgcgc gccatactct
     3541 cggccagaat gccgccgcca caaccgacat cgagcacctt tttgccaaat aaaccgccag
     3601 cacgctcggc aatatagccc agacgcagcg ggttaatgcg gtgcaacggt ttgaactcac
     3661 cttcaagatc ccaccagcgg gaggcgacgg cttcaaattt agcgatctct tcgtggtcta
     3721 cgttatggtt ttccggcgat ttttcggcat tcattggcac ttctactccg taattggcaa
     3781 gacaaacgag tatatcaggc attggatgtg aataaagcgt ataggtttac ctcaaactgc
     3841 gcggctgtgt tataatttgc gacctttgaa tccgggatac agtagaggga tagcggttag
     3901 atgagcgacc ttgcgagaga aattacaccg gtcaacattg aggaagagct gaagagctcc
     3961 tatctagatt atgcgatgtc ggtcattgtt ggccgtgcgc tgccagatgt ccgagatggc
     4021 ctgaagccgg tacaccgtcg cgtactttac gccatgaacg tactaggcaa tgactggaac
     4081 aaagcctata aaaaatctgc ccgtgtcgtt ggtgacgtaa tcggtaaata ccatccccat
     4141 ggtgactcgg cggtttatga cacgatcgtc cgtatggcgc agccattctc gctgcgttac
     4201 atgctggtag acggtcaggg taacttcggt tccatcgacg gcgactctgc ggcggcaatg
     4261 cgttatacgg aaatccgtct ggcgaaaatt gcccatgaac tgatggccga tctcgaaaaa
     4321 gagacggtcg atttcgttga taactatgac ggcacggaaa aaattcccga cgtcatgcca
     4381 accaaaattc ctaacctgct ggtgaacggt tcttccggta tcgccgtagg tatggcaacc
     4441 aacatcccgc cgcacaacct gacggaagtc atcaacggtt gtctggcgta tatcgatgat
     4501 gaagacatca gcattgaagg gctgatggaa cacatcccgg ggccggactt cccgacggcg
     4561 gcaatcatta acggtcgtcg cggtattgaa gaagcttacc gtaccggtcg cggcaaggtg
     4621 tatatccgcg ctcgcgcaga agtggaagtt gacgccaaaa ccggtcgtga aaccattatc
     4681 gtccacgaaa ttccgtatca ggtaaacaaa gcgcgcctga tcgagaagat tgcggaactg
     4741 gtaaaagaaa aacgcgtgga aggcatcagc gcgctgcgtg acgagtctga caaagacggt
     4801 atgcgcatcg tgattgaagt gaaacgcgat gcggtcggtg aagttgtgct caacaacctc
     4861 tactcccaga cccagttgca ggtttctttc ggtatcaaca tggtggcatt gcaccatggt
     4921 cagccgaaga tcatgaacct gaaagacatc atcgcggcgt ttgttcgtca ccgccgtgaa
     4981 gtggtgaccc gtcgtactat tttcgaactg cgtaaagctc gcgatcgtgc tcatatcctt
     5041 gaagcattag ccgtggcgct ggcgaacatc gacccgatca tcgaactgat ccgtcatgcg
     5101 ccgacgcctg cagaagcgaa aactgcgctg gttgctaatc cgtggcagct gggcaacgtt
     5161 gccgcgatgc tcgaacgtgc tggcgacgat gctgcgcgtc cggaatggct ggagccagag
     5221 ttcggcgtgc gtgatggtct gtactacctg accgaacagc aagctcaggc gattctggat
     5281 ctgcgtttgc agaaactgac cggccttgag cacgaaaaac tgctcgacga atacaaagag
     5341 ctgctggatc agatcgcgga actgttgcgt attcttggta gcgccgatcg tttgatggaa
     5401 gtgatccgtg aagagctgga gctggttcgt gaacagttcg gtgacaaacg tcgtactgaa
     5461 atcaccgcca acagcgcaga catcaacctg gaagatctga tcactcagga agatgtggta
     5521 gtgacgctct ctcaccaggg ctacgttaag tatcagccgc tttctgaata cgaagcgcag
     5581 cgtcgtggcg ggaaaggtaa atctgccgca cgtattaaag aagaagactt tatcgaccga
     5641 ctgctggtgg cgaacactca cgaccatatt ctgtgcttct ccagccgtgg tcgcgtctat
     5701 tcgatgaaag tttatcagtt gccggaagcc actcgtggcg cgcgcggtcg tccgatcgtc
     5761 aacctgctgc cgctggagca ggacgaacgt atcactgcga tcctgccagt gaccgagttt
     5821 gaagaaggcg tgaaagtctt catggcgacc gctaacggta ccgtgaagaa aactgtcctc
     5881 accgagttca accgtctgcg taccgccggt aaagtggcga tcaaactggt tgacggcgat
     5941 gagctgatcg gcgttgacct gaccagcggc gaagacgaag taatgctgtt ctccgctgaa
     6001 ggtaaagtgg tgcgctttaa agagtcttct gtccgtgcga tgggctgcaa caccaccggt
     6061 gttcgcggta ttcgcttagg tgaaggcgat aaagtcgtct ctctgatcgt gcctcgtggc
     6121 gatggcgcaa tcctcaccgc aacacaaaac ggttacggta aacgtaccgc agtggcggaa
     6181 tacccaacca agtcgcgtgc gacgaaaggg gttatctcca tcaaggttac cgaacgtaac
     6241 ggtttagttg ttggcgcggt acaggtagat gactgcgacc agatcatgat gatcaccgat
     6301 gccggtacgc tggtacgtac tcgcgtttca gaaatcagca tcgtgggccg taacacccag
     6361 ggcgtgatcc tcatccgtac tgcggaagat gaaaacgtag tgggtctgca acgtgttgct
     6421 gaaccggttg acgaggaaga tctcgatacc atcgacggca gtgccgcgga aggggacgat
     6481 gaaatcgctc cggaagtgga cgttgacgac gagccagaag aagaataatt ttacttcttc
     6541 atgccaaaag ggagctatct cccttgtttg aattgaaaag tccaggctgc aaagtctggg
     6601 cttttgtcgt attagggcac ggtaaagttt ggctgtgccc gtaaaaaatg gctggctata
     6661 cacaaggaat gtggcaatga gtggtgaaaa aaaggcgaaa ggctggcggt tctatggtct
     6721 tgtaggtttt ggcgcaatag tactgctttc cgctggcgtc tgggcgttgc aatatgctgg
     6781 cagtgggcca gaaaaaacgt tgtcgccgct ggtgatgcac aacaatctgc aaatcgatct
     6841 caatgagccg gacctctttc tcgacagcga ctctctgagc cagcttccca aagatctcct
     6901 caccattccg tttctccacg atgttctgag tgaagatttc gttttctatt atcagaatca
     6961 tgccgatcgt ctgggcattg aaggcagcat tcgtcgcatt gtctatgaac acgatctcac
     7021 gctgaaagat aaactctttt cgtcactctt agatca
//
LOCUS       DAJVSY010000191         7018 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.193, whole genome shotgun sequence.
ACCESSION   DAJVSY010000191 DAJVSY010000000
VERSION     DAJVSY010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7018
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.193"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(68..515)
                     /locus_tag="OQQ19_003729"
                     /pseudo
     CDS             complement(68..515)
                     /locus_tag="OQQ19_003729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312957.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
     gene            672..1601
                     /gene="metA"
                     /locus_tag="OQQ19_003730"
     CDS             672..1601
                     /gene="metA"
                     /locus_tag="OQQ19_003730"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HCS1805189.1"
                     /translation="MPIRVPDELPAVNFLREENVFVMTTSRASGQEIRPLKVLILNLM
                     PKKIETENQFLRLLSNSPLQVDIQLLRIDSRESRNTPAEHLNNFYCNFEDIQEQNFDG
                     LIVTGAPLGLVEFNDVAYWPQIKQVLEWSKDHVTSTLFVCWAVQAALNILYGIPKQTR
                     TDKLSGVYEHHILHPHALLTRGFDDSFLAPHSRYADFPAALIRDYTDLEILAETEEGD
                     AYLFASKDKRIAFVTGHPEYDAQTLAQEYFRDVEAGLDPEVPYNYFPHNDPQNTPRAS
                     WRSHGNLLFTNWLNYYVYQITPYDLRHMNPTLD"
     gene            1870..3471
                     /gene="aceB"
                     /locus_tag="OQQ19_003731"
     CDS             1870..3471
                     /gene="aceB"
                     /locus_tag="OQQ19_003731"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate synthase A"
                     /protein_id="HCS1805190.1"
                     /translation="MTEQATTTDELAFTRPYGEQEKQILTAEAVEFLTELVTHFTPQR
                     NKLLAARIQQQQDIDNGTLPDFISETASICDADWKIRGIPADLEDRRVEITGPVERKM
                     VINALNANVKVFMADFEDSLAPDWNKVIDGQINLRDAVNGTISYTNEAGKIYQLKPNP
                     AVLICRVRGLHLPEKHVTWRGEAIPGSLFDFALYFFHNYQALLAKGSGPYFYLPKTQS
                     WQEAAWWSEVFSYAEDRFNLPRGTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGR
                     WDYIFSYIKTLKNYPDRVLPDRQAVTMDKPFLNAYSRLLIKTCHKRGAFAMGGMAAFI
                     PSKDEEHNNQVLNKVKADKSLEANNGHDGTWIAHSGLADTAMAVFNDILGSRKNQLEV
                     MREQDAPITADQLLAPCDGERTEEGMRANIRVAVQYIEAWISGNGCVPIYGLMEDAAT
                     AEISRTSIWQWIHHQKMLSNGKPVTKALFRQMLGEEMKVIASELGEERFSQGRFGDAA
                     RLMEQITTSDELIDFLTLPGYCLLA"
     gene            3501..4798
                     /gene="aceA"
                     /locus_tag="OQQ19_003732"
                     /pseudo
     CDS             3501..4798
                     /gene="aceA"
                     /locus_tag="OQQ19_003732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418439.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase"
     gene            5079..6803
                     /gene="aceK"
                     /locus_tag="OQQ19_003733"
     CDS             5079..6803
                     /gene="aceK"
                     /locus_tag="OQQ19_003733"
                     /EC_number="2.7.11.5"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional isocitrate dehydrogenase
                     kinase/phosphatase"
                     /protein_id="HCS1805191.1"
                     /translation="MPRGLELLIAQTILQGFDAQYGRFLEVTSGAQQRFEQADWHAVQ
                     LAMKNRIHLYDHHVGLVVEQLRCITNGQSTDAAFLLRVKEHYTRLLPDYPRFEIAESF
                     FNSVYCRLFDHRSLTPERLFIFSSQPERRFRTIPRPLAKDFHPDHGWESLLMRVISDL
                     PLRLRWQNKSRDIHYIIRHLTETLGTDNLAESHLQVANELFYRNKAAWLVGKLITPSG
                     TLPFLLPIHQTDDGELFIDTCLTTTAEASIVFGFARSYFMVYAALVEWLREILPGKTT
                     AELYMAIGCQKHAKTESYREYLVYLQGCNEQFIEAPGIRGMVMLVFTLPGFDRVFKVI
                     KDKFAPQKEMSAAHVRACYQLVKEHDRVGRMADTQEFENFVLEKRHISPALMELLLQE
                     AAEKITDLGEQIVIRHLYIERRMVPLNIWLEQVEGQQLRDAIEEYGNAIRQLAAANIF
                     PGDMLFKNFGVTRHGRVVFYDYDEICYMTEVNFRDIPPPRYPEDELASEPWYSVSPGD
                     VFPEEFRHWLCADPRIGPLFEEMHADLFRADYWRALQNRIREGHVEDVYAYRRRQRFS
                     VRYGEMLF"
     gene            complement(6772..>7018)
                     /locus_tag="OQQ19_003734"
     CDS             complement(6772..>7018)
                     /locus_tag="OQQ19_003734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805192.1"
                     /translation="HARLFGFTAEDIMDFWQHKAPQKYSAFELAFEFGHRVIAELILN
                     TLNKMAESFGFTDNPRYIAEKNYMEALLKKASPHTVR"
BASE COUNT         1710 a         1819 c         1805 g         1684 t
ORIGIN      
        1 gtgaaaaaaa tgccgggtgc gacgctggcg cgtcttctcc agcctgggca ggcacggcag
       61 gggcggctta ttcccccaca tacgccagat tcagcaacgg atacggtttc cccaaatcgt
      121 ccacctcaga gcgtcccgta accttaaaac ccaccttctt atagaaccca accgcctgct
      181 cattttgctc attaacgttg gttgtcagtt ccggtgccat cgagagcgca tgctccacca
      241 gcatccgacc cacgccgcag ccgcacacat caggatcgat aaacagcgca tccatatgct
      301 gcccacttaa caacataaac ccaaccggct gatcccgttc attaaccgcg atccacaacg
      361 gcgcttccgg caggaaggaa cgaactagct agcacctcca gctcggcccg atactctgct
      421 gataaaaaat cgtgtgtggc atcgacagat cgacaccaaa tcgcaacgag ttcctcccct
      481 tcctcatgcc gtgagcggcg aatactaata accattttct ctccttttag tcattcttat
      541 attctaacgt agtcttttcc ttgaaacttt ctcaccttca acatgcaggc tcgacattgg
      601 caaattttct ggttatcttc agctatctgg atgtctaaac gtataagtgt atgtagtgag
      661 gtaatcaggt tatgccgatt cgtgtgccgg acgagctacc cgccgtcaat ttcttgcgtg
      721 aagaaaacgt ctttgtgatg acaacttctc gtgcgtctgg tcaggaaatt cgtccactta
      781 aggttctgat ccttaacctg atgccgaaga agattgaaac tgaaaatcag tttctgcgcc
      841 tgctttcaaa ctcacctttg caggtcgata ttcagctgtt gcgcatcgat tcccgtgaat
      901 cgcgcaacac gcccgcagag catctgaaca acttctactg taactttgaa gatattcagg
      961 aacagaactt tgacggtctg attgtaaccg gtgcgccgct gggcctggtg gagtttaatg
     1021 atgtcgctta ctggccgcag atcaaacagg tgctggagtg gtcgaaagat cacgtcacct
     1081 cgacgctgtt tgtctgctgg gcggtacagg ccgcgctcaa tatcctctac ggcattccta
     1141 agcaaactcg caccgacaaa ctctctggcg tttacgagca tcatattctc catcctcatg
     1201 cgcttctgac gcgtggcttt gatgattcat tcctggcacc acattcgcgc tatgctgact
     1261 ttccggcagc gttgattcgt gattacaccg atctggaaat tctggcagag acggaagaag
     1321 gggatgcata tctgtttgcc agcaaagata agcgcattgc ctttgtgacg ggccatcccg
     1381 aatatgatgc gcaaacgctg gcgcaggaat atttccgcga tgtggaagcc ggactagacc
     1441 cggaagtacc gtataactat ttcccgcaca atgatccgca aaatacaccg cgagcgagct
     1501 ggcgtagtca cggtaatttg ctgtttacca actggctcaa ctattacgtc tatcagatca
     1561 cgccatacga tctacggcac atgaatccaa cgctggatta atcttctgtg atagtcgatc
     1621 gttaagcgat tcagcacctt acctcaggca ccttcgggtg ccttttttat ttccgaaacg
     1681 cacctcagga ggtgaataaa ttttattcac attgttatca ataagttatc aagcattttc
     1741 aattaaaatg gaaattgttt ttgattttgc attttaaatg agtagtctta gttgtgctga
     1801 acgaaaagcg cacaacgatc cttcgttcac agtggggaag ttttcggatc catgacgagg
     1861 agctgcacga tgactgaaca ggcaacaaca accgatgaac tggctttcac aaggccgtat
     1921 ggcgagcagg agaagcaaat tcttactgcc gaagcggtag aatttctgac tgagctggtg
     1981 acgcatttta cgccacaacg aaataaactt ctggcagcgc gcattcagca gcagcaagat
     2041 attgataacg gaacgttgcc tgattttatt tcggaaacag cttccatttg cgatgctgat
     2101 tggaaaattc gcgggattcc tgcggactta gaagaccgcc gcgtagagat aactggcccg
     2161 gtagagcgca agatggtgat caacgcgctc aacgccaatg tgaaagtctt tatggccgat
     2221 ttcgaagatt cactggcccc ggactggaac aaagtgatcg acgggcaaat taacctgcgt
     2281 gatgcagtta acggtaccat cagctatacc aatgaagcag gcaaaattta ccagctcaag
     2341 cccaatccag cggttttgat ttgtcgggta cgcggtctgc acttgccgga aaaacatgtc
     2401 acctggcgtg gtgaggcaat ccccggcagc ctgtttgatt ttgcgctcta tttcttccac
     2461 aactatcagg ctctgttggc aaagggcagt ggtccctatt tctatctgcc gaaaacccag
     2521 tcctggcagg aagcggcctg gtggagcgaa gtcttcagct atgcagaaga tcgctttaat
     2581 ctgccgcgcg gcaccatcaa ggcgacgttg ctgattgaaa cgctgcccgc cgtgttccag
     2641 atggatgaaa tccttcacgc gctgcgtgac catattgttg gtctgaactg cggtcgttgg
     2701 gattacatct tcagctatat caaaacgttg aaaaactatc ccgatcgcgt cctgccagac
     2761 agacaggcag tgacgatgga taaaccattc ctgaatgctt actcacgcct gttgattaaa
     2821 acctgccata aacgcggtgc ttttgcgatg ggcggcatgg cggcgtttat tccgagcaaa
     2881 gatgaagagc acaataacca ggtgctcaac aaagtaaaag cggataaatc gctggaagcc
     2941 aataacggtc acgatggcac atggatcgct cactcaggcc ttgcggatac ggcaatggcg
     3001 gtattcaacg acattctcgg ctcccgtaaa aatcagcttg aagtgatgcg cgaacaagac
     3061 gcgccgatta ctgccgatca gctactggca ccttgtgacg gtgaacgcac cgaagaaggt
     3121 atgcgcgcaa atattcgcgt agccgtgcag tacatcgaag cgtggatctc tggcaacggc
     3181 tgtgtgccga tttatggcct gatggaagat gcggcgacgg ctgaaatttc ccgtacctca
     3241 atctggcagt ggatccatca tcaaaaaatg ttgagcaatg gcaaaccggt aactaaagcc
     3301 ttgttccgcc agatgctggg cgaagagatg aaagtcattg ccagcgaact gggcgaagaa
     3361 cgtttctccc aggggcgttt tggcgatgcc gcacgcttga tggaacagat caccacttcc
     3421 gatgagttaa ttgatttcct gaccctgcca ggctactgcc tgttagcgta aaccaccaca
     3481 taactatgga gcatctgcac atgaaaaccc gtacacaaca aattgaagaa ttacagaaag
     3541 agtggactca accgcgttgg gaaggcatta ctcgcccata cagcgcggaa gatgtggtga
     3601 aattacgcga ttcagtcaat cctgaatgca ccctggcgca actgggcgcg gcgagaatgt
     3661 ggcgtctgct gcatggcgag tcgaaaaaag ctacatcaac agcctcggtg cactgactgg
     3721 cggtcaggcg ctgcaacagg cgaaagcggg tattgaagca gtctatctgt cgggatggca
     3781 ggtagcggcg gacgctaacc tggcggccag catgtatccg gatcagtcgc tctatccggc
     3841 aaactcggtg ccagctgtgg tggagcggat caacaatact ttccgccgtg cggatcagat
     3901 ccaatggtcc gcgggcattg agccgggcga tccgcgctat gtcgattact tcctgccgat
     3961 cgttgccgat gcggaagccg gttttggcgg tgtcctgaat gcctttgaac tgatgaaagc
     4021 gatgattgaa gccggtgcag cggcagttca cttcgaagat cagctggcgt cagtgaagaa
     4081 atgcggtcac atgggcggca aagttttagt gccaactcaa gaagctattc agaaactggt
     4141 cgcggcgcgt ctggcagctg acgtgacggg cgttccaacc ctactggttg ctcgtaccga
     4201 tgccgcggat ctgatcacct ccgattgcga cccgtatgac agcgaattta ttaccggcga
     4261 gcgtaccagt gaaggcttct tccgtactca tgcgggcatt gagcaagcga tcagccgtgg
     4321 cctggcgtat gcgccatatg ctgacctggt ctggtgtgaa acctccacgc cggatctgga
     4381 actggcgcgt cgctttgcac aagctatcca cgcgaaatat ccgggcaaac tgctggctta
     4441 taactgctcg ccgtcgttca actggcagaa aaacctcgac gacaaaacta ttgccagctt
     4501 ccagcagcag ctgtcggata tgggctacaa gttccagttc atcaccctgg caggtatcca
     4561 cagcatgtgg ttcaacatgt ttgacctggc aaacgcctat gaccagggcg agggtatgaa
     4621 gcactacgtt gagaaagtgc agcagccgga atttgccgcc gcgaaagatg gctatacctt
     4681 cgtatctcac cagcaggaag tgggtacagg ttacttcgat aaagtgacga ctattattca
     4741 gggcggcacg tcttcagtca ccgcgctgac cggctccact gaagaatcgc agttctaagc
     4801 aacaacaacc gttgctgact gtaggccgga taaggcgttc acgccgcatc cggcaatcgg
     4861 tgcacgatgc ctgatgcgac gcttgcgcgt cttatcatgc ctacagccgt tgccgaacgt
     4921 aggccggata aggcatttac gccgcatccg gcaatcggtg cacgatgcct gatgcgacgc
     4981 ttgcgcgtct tatcatgcct acaaccgttg ccgaacgtag gctggataag gcgtttacgc
     5041 cgcatccggc aattctctgc tcctgatgag ggcgctaaat gccgcgtggc ctggaattac
     5101 tgattgctca aaccattttg caaggcttcg acgctcagta tggtcgattc ctcgaagtga
     5161 cttccggggc gcagcagcgt ttcgaacagg ccgactggca tgctgtccag ctggcgatga
     5221 aaaaccgtat ccatctttac gatcatcacg ttggtctggt cgtggagcaa ctgcgctgca
     5281 ttactaacgg ccaaagtacg gacgcggcat ttttactgcg cgttaaagag cattacacgc
     5341 ggctgttgcc ggattacccg cgcttcgaga ttgcggagag cttttttaac tccgtgtact
     5401 gtcggttatt tgaccaccgc tcgcttactc ccgagcggct ttttatcttt agctctcagc
     5461 cagagcgccg ctttcgtacc attccccgcc cgctggcgaa agactttcac cccgatcacg
     5521 gctgggaatc tctactgatg cgcgttatca gcgacctgcc gctgcgcctg cgctggcaga
     5581 ataaaagccg tgacattcat tacatcattc gccatctgac ggaaacgctg gggacagaca
     5641 acctcgcgga aagtcattta caggtggcga acgaactgtt ttaccgcaat aaagccgcct
     5701 ggctggtggg caaactgatc acgccttccg gcacgttgcc cttcttactg ccgatccacc
     5761 agacggacga cggcgagtta tttattgata cctgcctgac gacgaccgcc gaagcgagca
     5821 ttgtttttgg ctttgcgcgt tcttatttta tggtttatgc agcgctggtc gagtggctac
     5881 gggaaattct gccaggtaaa accactgctg aattgtatat ggctatcggc tgccagaagc
     5941 acgccaaaac cgaaagctac cgcgaatatc tcgtttatct acagggctgt aatgagcagt
     6001 tcattgaagc gccgggtatt cgtggaatgg tgatgttggt gtttacgctg ccgggctttg
     6061 atcgggtatt caaagtcatc aaagacaagt tcgcgccgca gaaagagatg tctgccgctc
     6121 acgttcgtgc ctgctatcaa ctggtgaaag agcacgaccg tgtgggccga atggcggaca
     6181 cccaggagtt tgaaaacttt gtgctggaga agcggcatat ttccccggca ttaatggaat
     6241 tactgctcca ggaagcagcg gaaaaaatca ccgatcttgg tgagcagatt gtaattcgcc
     6301 atctctatat cgagcggcgg atggtgccgc tcaatatctg gctggaacaa gtggaaggtc
     6361 agcagttgcg cgacgccatt gaagaatacg gtaacgctat tcgccagctt gccgctgcta
     6421 acatttttcc tggcgacatg ctgtttaaaa acttcggtgt cacccgtcac gggcgtgtgg
     6481 ttttttatga ttacgatgaa atttgctaca tgacggaagt gaatttccgc gacatcccgc
     6541 cgccgcgcta tccggaagac gaacttgcca gcgaaccgtg gtacagcgtc tcgccgggcg
     6601 atgttttccc ggaagagttt cgccactggc tatgcgccga cccgcgtatt ggtccgctgt
     6661 ttgaagagat gcacgccgac ctgttccgcg ctgattactg gcgcgcacta caaaaccgca
     6721 tacgtgaagg gcatgtggaa gatgtttatg cgtatcggcg caggcaaaga tttagcgtac
     6781 ggtatgggga gatgcttttt tgagtaaagc ttccatataa tttttctccg caatgtatcg
     6841 agggttatcc gtaaagccaa agctttcagc catcttattt aatgtattaa ggattaattc
     6901 agcaataacc cggtgaccaa attcaaaagc caactcaaag gcagagtatt tttgtggcgc
     6961 tttgtgttgc caaaaatcca taatatcttc agcggtaaat ccaaacaggc gtgcatgg
//
LOCUS       DAJVSY010000192         6874 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.194, whole genome shotgun sequence.
ACCESSION   DAJVSY010000192 DAJVSY010000000
VERSION     DAJVSY010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6874)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6874)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6874
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.194"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..156
                     /locus_tag="OQQ19_003735"
     CDS             <1..156
                     /locus_tag="OQQ19_003735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1805193.1"
                     /translation="ILQLCRNDSLMIGRESFSVDRITPDDGGCSYIRLRREGAGNVRA
                     GGYYEGA"
     gene            143..716
                     /locus_tag="OQQ19_003736"
                     /pseudo
     CDS             143..716
                     /locus_tag="OQQ19_003736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001214489.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
     gene            713..1114
                     /locus_tag="OQQ19_003737"
     CDS             713..1114
                     /locus_tag="OQQ19_003737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1805194.1"
                     /translation="MNRHTQIRQAVLASLKGECGGNVVLFDGLPAFIDAQELPAVAVW
                     LSDAQYTGKMTDEDDWQAVLHIAVFVRAQAPDSELDTWMENTIFPAMKDIPVLSGLID
                     TMIPLGFNYQRDNEMATWAMAEITYQITYTN"
     gene            1125..1865
                     /locus_tag="OQQ19_003738"
     CDS             1125..1865
                     /locus_tag="OQQ19_003738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707740.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HCS1805195.1"
                     /translation="MTTPNPLAKTKGAGTTFWMYTGKGDAFANPLSDTDWLRLAMVKD
                     LQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDTLATLAWRPGDSGQKKLVQLFDS
                     GEVCAFRIKYPNGTVDVFRGWLSSLGKTITSKEVMTRTVKISGVGRPYLAEEGAETVG
                     VTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKG
                     VKQGSVSIVGMTSDGEFVAVAAVTVSAP"
     gene            1924..2310
                     /locus_tag="OQQ19_003739"
     CDS             1924..2310
                     /locus_tag="OQQ19_003739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707739.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein G"
                     /protein_id="HCS1805196.1"
                     /translation="MFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRTAKFDAQEG
                     ELPEAERQIAFLRMGMDINAWLVSRSLWNAEQSQDVETLCASIMTTWSYDALGAGAER
                     VLSLSGMGTIENAGDDDHEALTPEKS"
     gene            2319..2647
                     /locus_tag="OQQ19_003740"
                     /pseudo
     CDS             2319..2647
                     /locus_tag="OQQ19_003740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308863.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein T"
     gene            2619..5660
                     /locus_tag="OQQ19_003741"
     CDS             2619..5660
                     /locus_tag="OQQ19_003741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1805197.1"
                     /translation="MDQIANLVIDLGIDAAEFKNEIPRIKNLLNGAAGDAERSSARMQ
                     RFMERQTQAARQTMHAASSAATAASAHAQTVEKNARAHERMAREVEQTRLRVDALNQK
                     MREEQAQARALAEAQDKAAAAFYRQIDSVKQAGAGLQELQRIQQQIRQARNSGGVGQQ
                     DYLALISEITAKTRALTQAEEQATRQKAAFIRQLKEQATRQNLSSSELLRARAAQLGV
                     SSAAEVYIRKMERAGKATHSLGLKSAAARRELGVLISQMARGNFGALRGSGITLANRA
                     GWTGALMSPKGMMTGGVIGGLVAAVLGLGKAWHDGRKEGEEFNRQLALTGHYAGVTVG
                     QLWKLSRAISGNGITQHAAAGALAQVVGSGAFHGNDIGMVAKAAAQMERSVGQSVSDT
                     INQFKRLKDDPVNAAKALDNALHFLTATQLEQIRVLGEQGRSSDAARIAMSALAEETG
                     KRTSDIDNNLNALGSTLQTLSDWWKQFWDAAMNIGREDSLDAQIDALQEKIQRAKKYP
                     WTNASTQVEYDQQRLNDLQEKKRRKDLQDAKAQAERNYQEQQKRRNAENAALNRMNET
                     EAARHQREIARINAMQYADQAVRDAAIQRENERYEKAIKKNTRATRNDEATRLLLQYS
                     QQQAQVEGQIAAARQSAGIATERMTEAHKQLLALQQRISDLDGKKLTADEKSVLARKN
                     ELIQALTLLDVKQQELQKQTALNDLRKKTVQLTSQLADKERALREQHNLDIATAGMGD
                     KQRQRYQAQLRIRQEYRQQLQQLENDSRQKGTYGTEDYRRAEEVLKGSLKRQLNENKR
                     YWQELEVAQGDWKNGAMRAFQNFTADADNAVGTAEQMFTVAFSSAGNALATFCTTGKL
                     NFKSFTSSLLSDMARIMAQMAMMQAVKGVGSLFGFTTNADGGVYQSADLSRYSGTVVN
                     RPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVADTGGSGMVMFAPQYNIGINND
                     GTNGQIGPAALKVVYDLGKKAAADFMQQQARDGGRLSGAYR"
     gene            5660..5989
                     /locus_tag="OQQ19_003742"
     CDS             5660..5989
                     /locus_tag="OQQ19_003742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1805198.1"
                     /translation="METFRWKVRPDMNVVSEPKVVAVKLGDGYEQRRPAGLNNLLSTY
                     SVTIRVRKGEHPPLKAFLERHGGVRAFQWTPPYDWKPIRVACRKWSASVGALWVTVTA
                     DFEQVVN"
     gene            5989..6688
                     /locus_tag="OQQ19_003743"
                     /pseudo
     CDS             5989..6688
                     /locus_tag="OQQ19_003743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706643.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
     gene            6693..>6874
                     /locus_tag="OQQ19_003744"
     CDS             6693..>6874
                     /locus_tag="OQQ19_003744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mov34/MPN/PAD-1 family protein"
                     /protein_id="HCS1805199.1"
                     /translation="MTQTESAILAHARRCAPAESCGFVVRTPEGERYIPCVNISAEPE
                     AYFRIAPEDWLRAEMQG"
BASE COUNT         1649 a         1575 c         2237 g         1413 t
ORIGIN      
        1 attttacagc tgtgtcgcaa tgattcgctg atgattggcc gggagtcttt cagcgtggat
       61 cgtattactc ctgatgacgg cggatgtagt tatatccggt tgcggcgtga aggagcagga
      121 aacgtaaggg cagggggata ttatgagggg gcttgagaat gccatccgca atctgaacag
      181 tcttgatacc cgtatggtgc cgcaggccag cgcatgggca gtaaaccggg ttgctgcaaa
      241 agttgtctcg gttgccaccc ggcaggtcgc caggaatacc gttgcgggag ataaccaggt
      301 gaaggggggc cccctgaaac tggtgcgtca gcgcgtccgg gtatttaaag ccagtccggc
      361 aggaaaaatg tatgcccgta tccgtgttaa ccggggcaat ctgcccgcca ttaagcttgg
      421 cacaacatgc cggcgtgccg gtgacggact gaaggtgggg aaatactttt ttcgtggtgc
      481 gtttatccag cagctggcga acggtcgctg gcatgttctc aggcgtcttc ctgaagcgtg
      541 ttttgaaaca ggaaaggaca gtaaggggcg gcccagaaaa aatcgtctgc ccgtggaggt
      601 tgtgaaaatt ccgctggccg gaccgctgac acaggcattt gaggatgccc gcgatcgcat
      661 cattgaaaca gctggggtat gccctgaaac agcaactgag gatacatttg ggatgaacag
      721 gcacacacaa atccgccagg cagtactggc aagcctgaag ggcgaatgcg gggggaatgt
      781 cgtgcttttt gacgggcttc cggcatttat tgatgcgcag gaactgcccg ccgtggcggt
      841 gtggctgagt gatgcgcagt acaccggaaa aatgacggat gaggacgact ggcaggctgt
      901 tctgcatatt gccgttttcg tccgtgcaca ggcgccggat tctgagctgg atacgtggat
      961 ggagaacacc atatttccgg ccatgaagga tattccggtg ctttccggac tcatcgacac
     1021 catgatccca ctcggtttta actatcaacg tgataatgag atggccacct gggcgatggc
     1081 ggaaatcacg taccagatca cgtacacgaa ttaaggaggt ggcaatgacc acaccaaatc
     1141 cactggcaaa gacgaaaggt gcgggaacga cgttctggat gtacaccggc aagggcgatg
     1201 cgtttgcgaa ccctttgtcg gacactgact ggctgcgtct tgcgatggtg aaggatctgc
     1261 aacctggcga aatgaccgct gatgcagaag atgacactta tctcgatgat gaagatgcag
     1321 actggaaaac gacaacccag gggcagaaat ccgtcggtga tactttggcg acgctggcct
     1381 ggcgtccggg tgacagcggg cagaaaaaac tggttcagtt gttcgattcc ggtgaagtct
     1441 gcgcgtttcg tatcaaatac cccaacggta cggttgatgt tttccgtggc tggctgagtt
     1501 cactgggtaa aaccattacc tcaaaagagg tgatgacccg tactgtaaaa atcagcggtg
     1561 tggggcgtcc gtatctggca gaggagggcg ctgaaaccgt gggtgttacc ggactgacgg
     1621 tggcaccggc atctgtcagt gtcaaagcgg gagcaaccac cacactgacc tttacagtaa
     1681 aacctgacgg ggccagtgac aaagcgatca gtgtgcattc gtcagatcct cagactgctt
     1741 cggtgaccct gagcgggctt gtggccacgg tgaaaggcgt gaagcagggc agtgtcagca
     1801 tcgtgggcat gacctctgac ggagagtttg tggcagtggc tgcggtgacc gtcagcgcac
     1861 cataacagga cgatactcat cattgccccg gttatccggg gctttttgca tccggagaac
     1921 atgatgtttc tgaaacagga tacgtttaat tatgaaaaac agtccgtggt gctcagtgag
     1981 ctgtccgggc tgcagagaat tgaatatctg acgtttgttc agcagcgaac ggcaaagttt
     2041 gatgcacagg agggagaact gccggaggct gaacgacaga ttgcttttct gcgtatggga
     2101 atggatatca atgcctggct ggtttcccgc tcactgtgga atgctgagca gtctcaggat
     2161 gttgagacgc tttgcgcatc cattatgaca acatggtcgt atgatgcgct gggcgcgggg
     2221 gcggagaggg ttctgtcgct gagcggtatg gggaccattg agaatgccgg ggatgatgat
     2281 catgaggcgc tgacgccgga aaagtcctga cgcgggaaat gcagtttgtc atgcggcttg
     2341 cccgggagtt ccggcgggca gactggcggc ggatgctgtc ggaaatgtcg gccactgagc
     2401 ttggtgaggg ggcgattatt tccggatgca gagcttcagt gatgtgtgga tggatgcgca
     2461 gtttgcctcg ctgaaggcat tgatcgtgag aatggtgtcc ggcagcagtg atgctgcggt
     2521 ggctgatttc agccttttac cggaagagaa cgggataccg gagcgaacgg acgaagaact
     2581 gatgcatctt ggggaaggta tttccggagg tgtgcgttat ggaccagata gccaacctgg
     2641 tcattgattt ggggattgat gcggcagagt ttaaaaatga aattccccgt atcaaaaacc
     2701 ttctgaatgg tgcagccggt gatgcagaac ggtcttctgc ccgtatgcag cgttttatgg
     2761 agcgtcagac tcaggcggcc cggcagacaa tgcatgcggc ttcttcggct gcaacagcag
     2821 catcagccca tgcgcagacg gtggagaaga atgcacgggc tcatgaacgc atggcccgtg
     2881 aggtggaaca aacccgtctg cgcgtggatg ccctgaatca gaaaatgcgc gaggaacagg
     2941 cgcaggccag ggcactggcg gaggcgcagg ataaagcggc tgccgccttt tatcgccaga
     3001 ttgacagtgt gaaacaggcc ggtgcggggc ttcaggaatt acagcgtatt cagcagcaga
     3061 tccgacaggc cagaaacagt ggcggggttg gtcagcagga ttatctggcg ctgatttcgg
     3121 agatcacggc gaaaacccgt gccctgacgc aggcagagga acaggccacc cggcagaaag
     3181 cggcgtttat ccgccagctt aaagagcagg caacccgcca gaatctgtcg tcttctgagt
     3241 tgcttcgcgc cagggcggct cagctggggg taagcagtgc tgcagaagtg tatatccgca
     3301 aaatggagcg ggcaggaaaa gccacacatt cgctggggct gaaaagtgcg gcagcccggc
     3361 gggagctggg ggtgttaatc agtcagatgg cgcgcggcaa ttttggtgcg ctgaggggat
     3421 ccgggataac gctggctaac cgtgccggat ggacaggcgc actgatgtcg ccgaaaggca
     3481 tgatgactgg cggcgttatt ggcggacttg tcgcggcggt cctgggtctg ggtaaagcct
     3541 ggcatgacgg ccggaaggag ggcgaggaat ttaaccgtca gctggcgctg acgggacatt
     3601 atgccggtgt cactgtcggg cagttgtgga aactcagccg ggccatatcc gggaatggta
     3661 tcacgcaaca tgcggcagcc ggtgcgctgg cacaggtggt gggcagtggg gcatttcatg
     3721 gaaacgatat tggtatggtg gcgaaagctg ccgcacagat ggagcgatcg gttggccagt
     3781 cggtcagcga taccataaat cagtttaagc ggctgaagga tgatcctgta aatgccgcga
     3841 aggcgctgga caatgcgctg cattttttga ctgccactca gcttgagcag atacgcgtcc
     3901 ttggggagca ggggcggtcc agtgatgcgg cccggatcgc catgtctgcg ctggcagagg
     3961 aaaccggtaa acgcacatct gatattgata ataatctcaa tgcgctgggt agtacgctgc
     4021 aaaccttgtc tgactggtgg aagcagttct gggatgcggc catgaatatt ggtcgtgaag
     4081 actcgctgga tgcgcagatt gatgcgttac aggaaaaaat tcagcgcgcg aaaaaatatc
     4141 cgtggacaaa cgcctccaca caggtggagt acgatcagca gcgtcttaac gatcttcagg
     4201 agaaaaaacg ccggaaggat ttgcaggatg caaaagcgca ggcagaacgg aattaccagg
     4261 agcaacagaa acgccggaat gctgaaaatg ccgcgctgaa ccggatgaat gaaacggaag
     4321 ctgcacgaca tcagcgggaa attgcgcgta ttaatgccat gcagtacgcc gaccaggctg
     4381 tcagggatgc ggcgatacag cgtgaaaatg aacgttacga aaaagccatt aagaaaaata
     4441 cacgggcaac ccgtaatgat gaggccaccc ggttattgct gcagtacagt cagcagcagg
     4501 cacaggtgga agggcagatt gctgctgcca gacagtcagc aggcattgcc actgaaagga
     4561 tgactgaagc gcataaacag cttctggccc tgcagcagcg catcagcgac ctggacggga
     4621 aaaagctgac ggcagatgaa aagagtgtgc tggcccgtaa gaatgagctg attcaggcgc
     4681 tgacgctgct ggatgtgaaa cagcaggagc tgcagaaaca gacagcgctt aacgacctga
     4741 gaaaaaaaac ggttcagctg accagccagc tggcagacaa agaacgtgca ctgcgtgagc
     4801 agcacaatct ggatattgcc actgcaggta tgggggataa gcagcggcag cgctaccagg
     4861 cacagttgcg catccggcag gaataccggc aacagttgca acagcttgag aatgacagtc
     4921 gccagaaagg cacttacggg acggaggact accggagggc tgaggaggtg ctgaagggga
     4981 gcctgaagcg acaactgaat gaaaacaaac gctactggca ggaactggaa gtggcgcagg
     5041 gcgactggaa aaacggtgcc atgcgggcgt ttcagaattt tacggcggat gcggataatg
     5101 cggtgggaac ggcagaacag atgtttacag tggcattcag cagtgccggt aatgcactgg
     5161 cgacattctg taccaccggt aagctgaatt ttaaatcctt cacctcttcc ctgttgtcag
     5221 atatggccag aattatggca cagatggcca tgatgcaggc ggtaaagggc gtcggctctt
     5281 tattcggctt cacgactaat gctgatggcg gtgtttacca gtctgctgat ttgagtcgct
     5341 acagtggcac ggtggttaac cgtccgacgt tttttgcttt tgcaaaaggc gcgggtgtga
     5401 tgggggaagc gggacctgaa gccattctgc cactgcgtcg cggtgctgat ggtaagctgg
     5461 gggttgtggc ggatactggt ggttcaggca tggtgatgtt tgccccgcag tacaacatcg
     5521 ggatcaataa cgacggcacg aacgggcaga taggtccggc agcactgaag gtggtttatg
     5581 acctcgggaa aaaagcggcc gcggacttta tgcaacagca ggcccgtgat ggtggccggt
     5641 taagtggagc ataccggtaa tggagacgtt tcgctggaag gtgcgcccgg atatgaatgt
     5701 ggtatcagag ccaaaagtgg tggcagtgaa gctgggtgat ggttatgaac agcgtcgccc
     5761 ggcgggactg aataatctgc tgtcgactta cagcgtgacg atacgtgttc gtaaaggtga
     5821 acacccacct ttaaaagcct ttctggaacg gcacggtggc gtccgcgcat ttcagtggac
     5881 gccaccttat gactggaaac cgatcagggt ggcttgtcgt aaatggtcgg caagcgtggg
     5941 ggcgttatgg gtgactgtaa cggccgattt tgaacaggtg gtgaactgat gcaggatatc
     6001 cggcaggaaa cactgaatga atgcacccgt gcggagcagt cggccagcgt ggtgctctgg
     6061 gaaatcgacc tgacagaggt cggtggagaa cgttattttt tctgtaatga gcagaacgaa
     6121 aaaggtgagc cggtcacctg gcaggggcga cagtatcagc cgtatcccat tcagggggag
     6181 tggttttgaa ctgaatggca aaggcaccag tacgcgcccc acgctgacgg tttctaacct
     6241 gtacggtatg gtcgccggga tggcggaaga tctgcagagt ctggtcggcg gaacggtggt
     6301 ccggcgtaag gtttacgccc gttttctgga tgcggtgaac ttcgtcaacg gaaacagtga
     6361 cgccgatccg gagcaggagg tgatcagccg ctggcgcatc gagcagtgca gcgaactgag
     6421 cgcggtcagt gcctcttttg tgctggccac accaacggag acggatggcg cggttttccc
     6481 ggggcgtatc atgctggcga atacctgtat gtggacctac cgttctgatg agtgtggtta
     6541 cacgggcagg gcagtggctg acgagttcga caaaccaacg acggatatcc ggaaggacaa
     6601 atgcagcaag tgtatgcgcg ggtgtgagtt gcgcaacaat accggtaatt tcggcggttt
     6661 cctttccatc aataaacttt ctcagtaaat ccatgacaca gacagaatca gcgattctgg
     6721 cgcacgcccg gcgatgtgcg ccagcggagt cgtgtggctt cgtggtgaga acgccggagg
     6781 gggagcggta tatcccttgt gtgaatattt ctgcagagcc ggaggcgtat tttcgtatcg
     6841 caccggaaga ctggctgcgg gcagagatgc aggg
//
LOCUS       DAJVSY010000193         6803 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.195, whole genome shotgun sequence.
ACCESSION   DAJVSY010000193 DAJVSY010000000
VERSION     DAJVSY010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6803)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6803)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6803
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.195"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            186..2102
                     /gene="dnaK"
                     /locus_tag="OQQ19_003745"
     CDS             186..2102
                     /gene="dnaK"
                     /locus_tag="OQQ19_003745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001737966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HCS1805200.1"
                     /translation="MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQ
                     DGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAW
                     VEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI
                     AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEV
                     LATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA
                     QQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDI
                     DDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLL
                     DVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAAD
                     NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN
                     EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE
                     SALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQTAGADASANNAKDD
                     DVVDAEFEEVKDKK"
     gene            2191..3321
                     /gene="dnaJ"
                     /locus_tag="OQQ19_003746"
     CDS             2191..3321
                     /gene="dnaJ"
                     /locus_tag="OQQ19_003746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HCS1805201.1"
                     /translation="MAKQDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAE
                     AKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIF
                     GGGRGRQRAARGADLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQT
                     CPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPA
                     GVDTGDRIRLAGEGEAGQHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAAL
                     GGEIEVPTLDGRVKLKVPGETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLN
                     EKQKQLLQELQESFGGPTGEHNSPRSKSFFDGVKKFFDDLTR"
     gene            complement(3425..3577)
                     /gene="mokC"
                     /locus_tag="OQQ19_003747"
     CDS             complement(3425..3577)
                     /gene="mokC"
                     /locus_tag="OQQ19_003747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin MokC"
                     /protein_id="HCS1805202.1"
                     /translation="MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF
                     TAYESE"
     gene            4163..5329
                     /gene="nhaA"
                     /locus_tag="OQQ19_003748"
     CDS             4163..5329
                     /gene="nhaA"
                     /locus_tag="OQQ19_003748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HCS1805203.1"
                     /translation="MKHLHRFFSSDASGGIILIIAAILAMMMANSGATSGWYHDFLET
                     PVQLRVGSLEINKNMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAI
                     GGMIVPALLYLAFNYADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALA
                     IIDDLGAIIIIALFYTNDLSMASLGVAAVAIAVLAVLNLCGVRRTGVYILVGVVLWTA
                     VLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSL
                     QGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMAVGIL
                     CGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRLRPSV"
     gene            5395..6294
                     /gene="nhaR"
                     /locus_tag="OQQ19_003749"
     CDS             5395..6294
                     /gene="nhaR"
                     /locus_tag="OQQ19_003749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_705976.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional activator NhaR"
                     /protein_id="HCS1805204.1"
                     /translation="MSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEE
                     RLQGKLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADA
                     LSKRLVSSVLNAAVVEGEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGL
                     FSVRIGECGVSFWCTNPPPEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEI
                     LGEFDDAALMKAFGAMHNAIFVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERM
                     IQHPAVQRICNTDYSALFSPAAR"
     gene            complement(6332..>6803)
                     /locus_tag="OQQ19_003750"
     CDS             complement(6332..>6803)
                     /locus_tag="OQQ19_003750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000871680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fimbrial family protein"
                     /protein_id="HCS1805205.1"
                     /translation="VRFNYNLNTILLVNLMTCGFEDQSIDTGRFVLSRINNENYQFHH
                     IRFDCIQGEQGELVFEPSDVEYYFEPVTIQESGTSILKNELENSEDGAGQVGFQLSND
                     GTNEIQYGKSNYYSFQHPHEGSNQIPLFIRPRTYGNNVSSGQIMSRVKIVVMYN"
BASE COUNT         1739 a         1602 c         1758 g         1704 t
ORIGIN      
        1 ctgcgcaaaa gcacaaaaaa tttttgcatc tcccccttga tgacgtgggt tacgacccca
       61 tttagtagtc aaccgcagtg agtgagtctg caaaaaaatg aaattgggca gttgaaacca
      121 gacatttcgc ccctattaca gactcacaac cacatgatga ccgaatatat agtggagacg
      181 tttagatggg taaaataatt ggtatcgacc tgggtactac caactcttgt gtagcgatta
      241 tggatggcac cactcctcgc gtgctggaga acgccgaagg cgatcgcacc acgccttcta
      301 ttattgccta tacccaggat ggtgaaactc tggttggtca gccggctaaa cgtcaggcag
      361 tgacgaaccc gcaaaacacc ctgtttgcga ttaaacgcct gattggccgc cgcttccagg
      421 acgaagaagt acagcgtgat gtttccatca tgccgttcaa aattattgct gctgataacg
      481 gcgacgcatg ggtcgaagtt aaaggccaga aaatggcacc gccgcagatt tctgctgaag
      541 tgctgaaaaa aatgaagaaa accgctgaag attacttggg tgaaccggta actgaagctg
      601 ttatcaccgt accggcatac tttaacgatg ctcagcgtca ggcaaccaaa gacgcaggcc
      661 gtatcgctgg tctggaagta aaacgtatca tcaacgaacc gaccgcagct gcgctggctt
      721 acggtctgga caaaggtact ggcaaccgta ctatcgcggt ttatgacctg gggggtggta
      781 ctttcgatat ttctattatc gaaatcgacg aagttgatgg cgaaaaaacc ttcgaagttc
      841 tggctaccaa cggtgatacc cacctgggtg gtgaagactt cgacagccgt ctgatcaact
      901 acctggttga agaattcaag aaagatcagg gcattgacct gcgcaacgat ccgctggcaa
      961 tgcagcgcct gaaagaagcg gcagaaaaag cgaaaatcga actgtcttcc gctcagcaga
     1021 ccgacgttaa cctgccgtac atcactgcag atgcgaccgg tccgaaacac atgaacatca
     1081 aagtgactcg tgcgaaactg gaaagcttgg ttgaagatct ggtaaaccgt tccattgagc
     1141 cgctgaaagt tgcactgcag gacgctggcc tgtccgtatc tgatatcgac gacgttatcc
     1201 tcgttggtgg tcagactcgt atgccaatgg ttcagaagaa agttgctgag ttctttggta
     1261 aagagccgcg taaagacgtt aacccggacg aagctgtagc aatcggtgct gctgttcagg
     1321 gtggtgttct gactggtgac gtgaaagacg tactgctgct ggacgttacc ccgctgtctc
     1381 tgggtatcga aaccatgggc ggtgtgatga cgacgctgat cgcgaaaaac accactatcc
     1441 cgaccaagca cagccaggtg ttctctaccg ctgaagacaa ccagtctgcg gtaaccatcc
     1501 atgtgctgca gggtgaacgt aaacgtgcgg ctgataacaa atctctgggt cagttcaacc
     1561 tggatggtat caacccggca ccgcgcggca tgccgcagat cgaagttacc ttcgatatcg
     1621 atgctgacgg tatcctgcac gtttccgcga aagataaaaa cagcggtaaa gagcagaaga
     1681 tcaccatcaa ggcttcttct ggtctgaacg aagatgaaat ccagaaaatg gtacgcgacg
     1741 cagaagctaa cgccgaagct gaccgtaagt ttgaagagct ggtacagact cgcaaccagg
     1801 gcgaccatct gctgcacagc acccgtaagc aggttgaaga agcaggcgac aaactgccgg
     1861 ctgacgacaa aactgctatc gagtctgcac tgactgcact ggaaactgct ctgaaaggtg
     1921 aagacaaagc cgctatcgaa gcgaaaatgc aggagctggc acaggtttcc cagaaactga
     1981 tggaaatcgc ccagcagcaa catgcccagc agcagactgc cggtgctgat gcttctgcaa
     2041 acaacgcgaa agatgacgat gttgtcgacg ctgaatttga agaagtcaaa gacaaaaaat
     2101 aatcgcccta taaacgggta attatactga cacgggcgaa ggggaatttc ctctccgccc
     2161 gtgcattcat ctaggggcaa tttaaaaaag atggctaagc aagattatta cgagatttta
     2221 ggcgtttcca aaacagcgga agagcgtgaa atcaaaaagg cctacaaacg cctggccatg
     2281 aaataccacc cggaccgtaa ccagggtgac aaagaggccg aggcgaaatt taaagagatc
     2341 aaggaagctt atgaagttct gaccgactcg caaaaacgtg cggcatacga tcagtatggt
     2401 catgctgcgt ttgagcaagg cggcatgggc ggcggcggtt ttggcggcgg cgcagacttc
     2461 agcgatattt ttggtgacgt tttcggcgat atttttggcg gcggacgtgg tcgtcaacgt
     2521 gcggcgcgcg gtgctgattt acgctataac atggagctca ccctcgaaga agctgtacgt
     2581 ggcgtgacca aagagatccg cattccgact ctggaagagt gtgacgtttg ccacggtagc
     2641 ggtgcaaaac caggtacaca gccgcagacc tgtccgacct gtcatggttc tggtcaggtg
     2701 cagatgcgtc agggtttctt tgccgtgcag cagacctgtc cacactgtca gggccgcggt
     2761 acgctgatca aagatccgtg caacaaatgt catggtcatg gtcgtgttga gcgcagcaaa
     2821 acgctgtccg ttaaaatccc ggcaggggtg gacactggag accgcatccg tcttgcgggc
     2881 gaaggtgaag cgggccagca tggcgcaccg gcaggcgatc tgtacgttca ggttcaggtt
     2941 aaacagcacc cgattttcga gcgtgaaggc aacaacctgt attgcgaagt cccgatcaac
     3001 ttcgctatgg cggcgctggg tggcgaaatc gaagtaccga cccttgatgg tcgcgtcaaa
     3061 ctgaaagtgc ctggcgaaac ccagaccggt aagcttttcc gtatgcgcgg taaaggcgtc
     3121 aagtctgtcc gcggtggcgc acagggtgat ttgctgtgcc gcgttgtcgt cgaaacaccg
     3181 gtaggcctga acgagaagca gaaacagctg ctgcaagagc tgcaagaaag cttcggtggc
     3241 ccaaccggcg agcacaacag cccgcgctca aagagcttct ttgatggtgt gaagaagttt
     3301 tttgacgacc tgacccgcta acctccccaa aagcctgccc gtgggcaggc ctgggtaaaa
     3361 atagggtgcg ttgaagatat gcgagcacct gtaaagtggc ggggatcact ccccgccgtt
     3421 gctcttactc ggattcgtaa gccgtgaaaa cagcaacctc cgtctggcca gttcggatgt
     3481 gaacctcaca gaggtctttt ctcgttacca gcgccgccac tacggcggtg atacagatga
     3541 cgatcagggc gacaatcatc gccttatgct gcttcattgc tctcttctcc ttgaccttac
     3601 ggtcagtaag aggcactcta catgtgttca gcatataggg ggcctcgggt tgatggtaaa
     3661 atatcactcg gggcttttct ctatctgccg ttcagctaat gcctgagaca gacagcctca
     3721 agcacccgcc gctattatat cgctctcttt aacccatttt gttttatcga ttctaatcct
     3781 gaagacgcct cgcatttttg tggcgtaatt ttttaatgat ttaattattt aactttaatt
     3841 tatctcttta tcgcaattat tgacgacaag ctggattatt tttgaaatat tgtcctaaca
     3901 aataacgccg actgacaaga aattaattat tacttttcct aattaatccc tcagaaatcc
     3961 tcaccttaag ctatgattat ctgagcttag ggtcactcgt cagcgcttac agccgtcaaa
     4021 aactcatctc accgctgatg gcgaaaattc tacaaaggct cgtaaaaaac gaattattcc
     4081 tacactataa tctgatttta acgatgattc gtgcggggta aaatagtaaa aacgatttat
     4141 tcacctgaaa gagaaataaa aagtgaaaca tctgcatcga ttctttagca gtgatgcctc
     4201 gggaggcatt attcttatca ttgccgctat cctggcgatg atgatggcca acagcggcgc
     4261 aaccagtgga tggtatcacg actttctgga gacgccggtt cagctccggg ttggttcact
     4321 cgaaatcaac aaaaacatgc tgttatggat aaatgacgcg ctgatggcgg tatttttcct
     4381 gttagtcggt ctggaagtta aacgtgaact gatgcaagga tcgctagcca gcttacgcca
     4441 ggccgcattt ccagttatcg ccgctattgg tgggatgatt gtgccggcat tactctatct
     4501 ggcctttaac tatgccgatc cgattacccg cgaagggtgg gcgatcccgg cggctactga
     4561 cattgccttt gcacttggag tgctggcgct gttgggaagt cgtgttccgt tagcactgaa
     4621 gatctttttg atggctctgg ctattatcga cgatcttggg gccatcatta tcatcgcatt
     4681 gttctacact aatgacttat cgatggcctc tcttggcgtc gcggctgtag caattgcggt
     4741 actcgcggta ttgaatctgt gtggtgtacg ccgcacgggc gtctatattc tggttggcgt
     4801 agtgttgtgg actgcggtgt tgaaatcggg ggttcacgca accttggcgg gggtaattgt
     4861 cggcttcttt attcctttga aagagaagca tgggcgttct ccagcgaagc gactggagca
     4921 tgtgttacac ccgtgggtgg cgtatctgat tttgccgctg tttgcatttg ctaatgctgg
     4981 cgtttcactg caaggcgtca cgctggatgg cttgacctcc attctgccat tggggatcat
     5041 cgctggcttg ctgattggca aaccgctggg gattagtctg ttctgctggt tggcgctgcg
     5101 tttgaaactg gcgcatctgc ctgagggaac gacttatcag caaattatgg cggtggggat
     5161 cctgtgcggt atcggtttta ctatgtctat ctttattgcc agcctggcct ttggtagcgt
     5221 agatccagaa ctgattaact gggcgaaact cggtatcctg gtcggttcta tctcttcggc
     5281 ggtaattgga tacagctggt tacgcgttcg tttgcgtcca tcagtgtgac aggacggttt
     5341 accggggagc cataaacggc tcccttttca ttgttatcag ggagagaaat gagcatgtct
     5401 catatcaatt acaaccactt gtattacttc tggcatgtct ataaagaagg ttccgtggtt
     5461 ggcgcagcgg aggcgcttta tttaactcca caaaccatta ccggacagat ccgggctctg
     5521 gaagagcgcc tgcaaggcaa attatttaag cgcaagggac gtggtctcga acccagcgag
     5581 ctgggagaac tggtctatcg ctatgccgat aaaatgttca ccttaagcca ggaaatgctg
     5641 gatattgtga actatcgcaa agaatccaat ttattgtttg acgttggcgt ggctgatgca
     5701 ctttccaaac gcctggtcag tagcgtgctg aatgctgcag tggtagaagg cgagccgatt
     5761 catcttcgct gcttcgaatc cacccacgaa atgctactgg agcaattaag ccagcataaa
     5821 ctggatatga tcatttccga ctgtccgata gactctacgc agcaggaagg cctgttctcc
     5881 gtgagaattg gcgaatgtgg cgtgagtttc tggtgtacaa atccaccacc agaaaaaccg
     5941 ttcccggctt gtctggaaga acggcgactt ttgattcctg ggcgacgttc aatgttaggg
     6001 cgcaaattgc ttaactggtt taactcccag ggattaaacg tagaaatcct cggcgagttt
     6061 gatgatgccg cgttgatgaa agcttttggt gcaatgcaca atgcaatctt cgttgcccca
     6121 acgctttatg catatgactt ttatgccgat aaaactgtcg tagaaattgg tcgcgtcgag
     6181 aatgtgatgg aagagtacca tgctattttt gctgagcgga tgattcagca cccggcggta
     6241 cagcgaatct gcaatacgga ttattctgcg ctttttagtc cagcggcgcg ttaatcggca
     6301 gctcccccaa agttaaagtg gaggagatag attagttgta cataaccacg attttgactc
     6361 ggctcattat ttgcccgctt gagacattat ttccatatgt acgcgggcga ataaatagag
     6421 gaatctgatt acttccttca tggggatgct gaaaagagta gtaattgctt ttaccatact
     6481 ggatttcatt cgtaccatca ttggagagtt gaaagcctac ttgacccgca ccgtcctcac
     6541 tgttttctaa ctcatttttt aatatgctgg ttcctgactc ctgtatcgtc actggttcaa
     6601 agtaatattc aacatcactg ggttcaaaaa ctaattcacc ttgctcgccc tggatgcagt
     6661 caaatcttat atgatgaaac tgataatttt cattattgat acgagacagt acaaatcgtc
     6721 cagtgtcgat ggattgatct tcaaaaccac aggtcattaa atttaccagt aaaatagtat
     6781 ttaaattata attaaagcgg acg
//
LOCUS       DAJVSY010000194         6677 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.196, whole genome shotgun sequence.
ACCESSION   DAJVSY010000194 DAJVSY010000000
VERSION     DAJVSY010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6677
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.196"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(210..485)
                     /locus_tag="OQQ19_003751"
     CDS             complement(210..485)
                     /locus_tag="OQQ19_003751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000187070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805206.1"
                     /translation="MTPEKHPETTMKRHRLTEAEERRLAEAIAAEARAMGLTKKDKMP
                     QETKRRLRARILKAILDERTASKNREATLTAGQDPDDTFTWQPLRRR"
     gene            719..2812
                     /locus_tag="OQQ19_003752"
     CDS             719..2812
                     /locus_tag="OQQ19_003752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-type pyocin domain-containing protein"
                     /protein_id="HCS1805207.1"
                     /translation="MSDYEGSGPTEGIDYGHSMVVWPSTGLISGGDVKPGGSSGIAPS
                     MPPGWGDYSPQGIALVQSVLFPGIIRRIILDKELEEGDWSGWSVSVHSPWGNEKVSAA
                     RTVLENGLRGGLPEPSRPAAVSFARLEPASGNEQKIIRLMVTQQLEQVTDIPASQLPA
                     AGNNVPVKYRLMDLMQNGTQYMAIIGGIPMTVPVVDAVPVPDRSRPGTNIKDVYSAPV
                     SPDLPDLVLSVGQMNTPVLSNPEIQEEGVIAETGNYVEAGYTMSSNNHDVIVRFPEGS
                     GVSPLYISTVEILDSNGLSQRQEAENKAKDDFRVKKEEAVARAEAEKAKAELFSKAGV
                     NQPPVYTQEMMERANSVMNEQGALVLNNTASSVQLAMTGTGVWTAAGDIAGNISKFFS
                     NALEKVTIPEVSPLLMRISLGALWFHSEEAGAGSDIVPGRNLEAMFSLSAQMLAGQGV
                     VIEPGATSVNLPVRGQLINSNGQLALDLLKTGNESIPAAVPVLNAVRDTATGLDKITL
                     PAVVGAPSRTILVNPVPQPSVPTDTGNHQPVPVTPVHTGTEVKPVEMPVTTITPVSDV
                     GGLRDFIYWRPDAAGTGVEAVYVMLNDPLDSGRFSRKQLDKKYKHAGDFGISDTKKNR
                     ETLTKFRDAIEEHLSDKDTVEKGTYRREKGSKVYFNPNTMNVVIIKSNGEFLSGWKIN
                     PDADNGRIYLETGEL"
     gene            2809..3072
                     /locus_tag="OQQ19_003753"
     CDS             2809..3072
                     /locus_tag="OQQ19_003753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032488334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin D immunity protein"
                     /protein_id="HCS1805208.1"
                     /translation="MNKMAIIDLAKLFLASKITAIEFSERICVERRRLYGVKDLSPNI
                     LNCGEELFMAAERFEPDADRADYEIDDNGLKVEVRSILEKFKL"
     gene            3142..3288
                     /locus_tag="OQQ19_003754"
     CDS             3142..3288
                     /locus_tag="OQQ19_003754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_072020761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin release lysis protein"
                     /protein_id="HCS1805209.1"
                     /translation="MKKKIGGSMILVLAVLCLTACQANYVRDVQGGTIAPSSSSKLIG
                     VAVQ"
     gene            complement(4336..4527)
                     /locus_tag="OQQ19_003755"
     CDS             complement(4336..4527)
                     /locus_tag="OQQ19_003755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="HCS1805210.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADDQADICEALHDH
                     ADELYRSCLARFGDDGENL"
     gene            4595..4918
                     /locus_tag="OQQ19_003756"
     CDS             4595..4918
                     /locus_tag="OQQ19_003756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="HCS1805211.1"
                     /translation="MLTIRVTDEEHARLLARCEGKQLASWMRKVCLGAPPSKTSGLPT
                     LAPPLLRQFASVGNNLNQIARKINSGQWSGHDRVHVVAALMAIGRELSELRDEVRKQG
                     ERDDS"
     gene            4881..5624
                     /locus_tag="OQQ19_003757"
                     /pseudo
     CDS             4881..5624
                     /locus_tag="OQQ19_003757"
                     /inference="COORDINATES: protein motif:HMM:NF015397.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            5596..6156
                     /locus_tag="OQQ19_003758"
     CDS             5596..6156
                     /locus_tag="OQQ19_003758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="HCS1805212.1"
                     /translation="MSNLLQMGTDFEKKLKERAVSTENILNSEFRKLEASVDRELNLN
                     GQKIRDAISAHTAAVKEQLETLNSAVNAQFSATENELARRQEELLWKLVKGRILYPSL
                     TALCVTGGIFLASWGLIQWQESRIAANILAIRDQEETLAKLREKTWGVTYHEGRNGKF
                     LVLPSGVKGENNWTVEKKNAVRLVRE"
     gene            6163..6396
                     /locus_tag="OQQ19_003759"
     CDS             6163..6396
                     /locus_tag="OQQ19_003759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="HCS1805213.1"
                     /translation="MTELEMHLLNALEQLQQDYTQRLKDWESAFTDLQHMFELTRQEN
                     GQLREQCDDLSQQVQRLVEQVDHLSRLFITNSR"
BASE COUNT         1670 a         1418 c         1934 g         1655 t
ORIGIN      
        1 aaaaaaaaca gtgtcatgag gtttacgcag gcaaaaccag cgttattcac atggctgaat
       61 agctatgcat acggttaaaa tttatcaggt gcgatcgcgg cagcttttcg ggtggtttgt
      121 tgctattttt acctgtcagc agccgtgatc gcgctgaacg catttcagcg gtgcgtacaa
      181 ttaaggggtt atgttaaata acccttagct tagcggcggc gcagtggttg ccaggtgaag
      241 gtgtcatccg ggtcctgtcc ggcagtcagt gtggcttctc gatttttgct ggccgttcgt
      301 tcatcaagaa tggctttaag tatccgtgcc cggaggcgtc gctttgtttc ctgcggcatt
      361 ttgtcctttt tcgtcagccc catggcacga gcttcagcgg caatggcttc tgccagtcgg
      421 cgctcttcgg cttcggtcag tctatggcgt ttcatggtgg tctccggatg tttctctggt
      481 gtcataacag tttaactgtt ggctctctcc ttatgctaat cagccttctt tcatgcctgt
      541 tgccattgag tttaagaatg attggttgtt tttcttgagc gttttcacaa aaacgtaaat
      601 ccagtgggtt gacaggattt acgaggtgac gtaacttttc actgtatata aaaccactgg
      661 ttttatatac agtttgttgt ttttaacgca ttgttttaaa agtcaaagag gtatttttat
      721 gagtgattac gaaggtagtg gtccgacaga aggtattgat tatgggcact cgatggtcgt
      781 gtggccgtca acaggactga tttcgggtgg tgatgtgaaa ccaggaggct catcaggtat
      841 cgctccatcc atgcctccgg gatgggggga ttacagccca cagggtatcg cacttgtaca
      901 aagtgttctt tttccgggaa ttattcgccg gattattctg gataaggaac ttgaagaggg
      961 agactggtcg ggatggtctg tcagtgtgca tagcccttgg ggaaacgaga aagtttccgc
     1021 tgcacgaaca gttcttgaga atggtttacg tggtggtttg ccagaaccgt ctcgcccggc
     1081 tgctgtttct tttgcccgtc tggagcctgc ttccggaaat gagcaaaaaa ttattcgtct
     1141 tatggttaca cagcaactgg aacaggtaac ggatattccg gccagccagt taccagcagc
     1201 gggtaataat gtaccggtga aatatcgtct gatggacctt atgcagaacg gtacgcaata
     1261 tatggctatt atcggaggta ttccgatgac agtgccggta gttgatgccg ttccagttcc
     1321 ggaccggagt cgtccgggaa caaatattaa agatgtttac agtgcccctg tatcaccaga
     1381 tctaccggac ctggtattaa gtgtgggtca gatgaatact ccggttctgt ctaatcccga
     1441 aattcaggaa gaaggagtta ttgctgagac aggtaattat gttgaggctg gttatacgat
     1501 gtccagtaat aatcatgatg tcattgttcg ttttcctgaa ggcagtggtg tttctccgtt
     1561 atatatttca actgtagaga ttctggacag taatggtctg agtcagcgtc aggaagccga
     1621 aaataaagca aaggatgatt tcagagtcaa gaaagaagaa gcggtagccc gggctgaagc
     1681 tgaaaaagca aaagccgagt tatttagtaa agcaggtgtg aaccagcctc ctgtatatac
     1741 acaggaaatg atggaaaggg ctaattcagt aatgaatgag cagggagctc ttgttctgaa
     1801 taacactgcc agttctgtac aactggcgat gaccggaact ggtgtctgga ctgctgctgg
     1861 tgatattgca ggcaacataa gcaagttttt cagtaatgct ctggagaaag taaccatacc
     1921 cgaagtgagt cccctgctta tgcggatttc tcttggtgct ctgtggtttc attcagaaga
     1981 agctggagca ggaagtgata tcgtgccggg gcgaaatctg gaggcgatgt tttcgctgag
     2041 tgctcagatg ttggctggac agggcgtggt cattgaacct ggtgcgacga gtgtaaatct
     2101 gcctgttcgt ggacaattga taaacagtaa cgggcaatta gctctggatt tactgaaaac
     2161 agggaatgaa agtatcccgg ctgcggttcc tgttcttaat gctgtccgtg atacagcaac
     2221 aggactggat aaaatcacgt taccagcagt agtaggcgca ccttcccgga cgattctggt
     2281 taatccggta ccacaacctt cggtgccaac agatacaggt aatcatcaac ccgttccggt
     2341 tacaccagtg catacaggaa cggaagtaaa accggtcgaa atgccagtaa cgacgattac
     2401 tcctgtttct gatgttggtg gactacgaga ttttatttac tggcgtcctg atgctgctgg
     2461 gactggtgtt gaagctgttt atgtgatgct taatgatcct ctggattcag ggcgattttc
     2521 gcgtaaacaa cttgataaaa aatataaaca tgctggtgat tttggtatta gtgatacaaa
     2581 aaagaatcgt gaaactctta ctaaattcag ggatgctatt gaggagcatt tatcggataa
     2641 ggatacagta gagaaaggaa cataccgaag agaaaaaggt tcaaaagttt attttaatcc
     2701 taatacgatg aatgtggtta taattaagtc aaatggtgag ttcttatctg ggtggaaaat
     2761 aaatccagat gcggataatg gtcgaattta tttagagaca ggtgaactat gaacaagatg
     2821 gcaataatcg atttggcgaa attattttta gcttcgaaaa ttacagcaat tgagttttca
     2881 gagcgaattt gtgttgaacg gagaagattg tatggtgtta aggatttgtc tccgaatata
     2941 ttaaattgtg gggaagagtt gtttatggct gctgagcgat ttgagcctga tgcagatagg
     3001 gctgattatg aaattgatga taatggactt aaggttgagg tccgatctat cttggaaaaa
     3061 tttaaattat aatcatgagt gattttaata tctggcattt aagtataaat gtcagatatt
     3121 cactcatgac aaggagatgt catgaaaaaa aagatagggg gatctatgat tctcgttctt
     3181 gctgttttgt gtctgactgc ttgccaagct aactatgtaa gggatgttca gggaggaaca
     3241 attgctccat catcatcttc gaaactaatc ggggtggcgg ttcagtgaaa aatattaaag
     3301 gatcttcttg agatcctttt tttctgcgcg taatctgctg cctgtaaacg aaaaaacccg
     3361 ccttgtggcg ggtccttccg tccgatcaga agtcttcgac ctcttctaat cggcggtggt
     3421 aactggcttg gaggagcaca gtcaccaaaa ctgtcttttc agtttagcct taactggttc
     3481 ataacttcaa gagcaactcc tctaaatcag ttaccaatgg ctgctgccag tggcgttgag
     3541 tcgtgtcttt tccgggttgg ccccaagaga acagttaccg gagaaggtgc agcagtcggg
     3601 ctgaacgggg ggttcctgca tacagcccgg cccggagcga actgcctaag tcgccccgag
     3661 ataccagaag acgtgagcta tgagaaagcg ccacgtgtcc cgcaagggag aaaggcggaa
     3721 aaggtatccg gcaatcgata tggcgggaac gtgggggcgc aggagggagc gattcaccgg
     3781 aaacggtgat gatctttaag ccacgtcggg tttcgccacc gctggcggat ttcatggttg
     3841 agtcggaaga ctcccacaga tgcaccgaaa aagtgtctgt tttgtgaagt ccgtcagggg
     3901 ggcggagcct atggaaaaag cgccagcggc gcggcctttt gtcctggctt tgcctttttg
     3961 ctcacatgtt ctttccggcc ttatcccctg attctgtgga taactgtgtt accgtttttg
     4021 tgtgagtcag taccgctcgc cgcagccgaa cgaccgagcg tagcgagtca gtgagcgagg
     4081 aagcggaaga gcgccggaag ctacattttc tccttacgca tctgtgcggc atttcacacc
     4141 cggcatggtg cacttttcat acaatccgca ctgatgccgc ataagtaagc cagtatacac
     4201 tccgctatcg ctacgtgact gggtcatggc tgcgccccga cacccgctaa aacctgctga
     4261 cgcgccctga cgggcttgtc tgctcccggc atccgctcac aggccagctg tgaccgtctc
     4321 cgggagctgc atgtgtcaga ggttttcacc gtcatccccg aagcgtgcga ggcagctgcg
     4381 gtaaagctcg tcagcgtggt cgtgaagcgc ttcgcagatg tcagcctggt cgtcggcgtc
     4441 cagttcattc agtttttcca gcagggtcag cgtctggctt ctgatgaagc gggccatgtt
     4501 aagggcggtt ttttcctgtt tagtcacagt tctgtttctc catgtgtggg gagtctgtcg
     4561 gaggttttta atgataccgg tgaaacgcga aaggatgctc acgatacggg tcacggatga
     4621 ggaacatgcg cggctgctgg cacgttgtga gggaaaacaa cttgcgtcat ggatgcgtaa
     4681 ggtctgcctg ggggcaccgc catcgaaaac gtcaggtctt ccgacactgg caccgccgct
     4741 gttgcgccag ttcgcttcgg tcggcaataa cctgaatcag atagcccgga agataaacag
     4801 cggacagtgg tcggggcatg accgggttca tgtggtggct gcactgatgg ccatcggacg
     4861 tgaactgagt gagctgaggg atgaggtccg taaacaggga gaacgggatg atagttaagt
     4921 ttcatgccag gggaaaaggc ggtggcagtg gtccggttga ttacctgctg ggccgggagc
     4981 gtaaccggga aggggcgaga gttctgcggg gtgctcccga agaggtgcgg gaactcatcg
     5041 atgccacgcc gtttgcgaaa aaatacacct cgggggttct gtcttttgca gagcagaccc
     5101 tgccaccggg agagcgtgaa agggtgatgg agagctttga gcgggtactg atgcccggtc
     5161 ttgaaaaaaa tcagtacagc atcctgtggg tggagcacca ggacaagggg cgtcttgagc
     5221 tgaattttgt catcccgaat atggagctgg cgagcggaaa acggctccag ccctattacg
     5281 accgagcgga ccgtccgcga atcaatgcct ggcagacact ggtgaatcac cattacgggc
     5341 tgcacgaccc gaacgcaccg gagaacaggc ggacacttgt caccccgaat aatctgccga
     5401 aagcgaaaca ggaggccgca gaagcgatta cgaggggact ggaggctctt taccatgccg
     5461 gagcgctaaa aacgcgtcag gatgtcactg aggcgcttac agcggcaggt tttgaggttg
     5521 tgaggacaac caggagcagt atcagtatcg ccgacccgga gggcgggcgt aatctcaggc
     5581 tgaaaggggc gctgtatgag caatctttta caaatgggga cagacttcga gaagaaactg
     5641 aaagagcgtg ccgtctctac agagaacata ctgaacagcg agttcaggaa gctcgaagcg
     5701 tctgtagaca gggaactgaa cttaaacggg cagaaaatca gagacgctat cagcgcacac
     5761 acagcagcgg tgaaagaaca actggagacg ctgaacagtg ccgtgaacgc gcagttcagc
     5821 gccacagaga acgaactggc ccggcggcag gaagagctgc tctggaagct ggtcaaaggg
     5881 cggatactgt acccgtcgct gacggcgctt tgcgtcacgg gcgggatttt tctggcgtca
     5941 tgggggctga ttcagtggca ggaaagccgg attgcggcga acatcctggc tatcagggac
     6001 caggaagaga cgctggcgaa actccgggaa aaaacatggg gtgtgacgta tcacgagggc
     6061 aggaacggga aatttctggt attgccgtcc ggggtgaagg gggaaaacaa ctggacggtg
     6121 gagaagaaga acgcagtaag actggtcagg gagtaagtga gtatgacaga gctggaaatg
     6181 cacttactga acgccttaga gcaattgcag caggactata cgcagcggct gaaagactgg
     6241 gagagcgcct tcacggattt gcagcatatg ttcgagctga cacgacagga gaacgggcaa
     6301 ctgagggaac agtgcgacga cttgagtcag caggtgcaga gattagtcga gcaggtggac
     6361 cacttgagtc ggttatttat cacgaacagc agataaggga tgaacaggaa aggcaggcac
     6421 gcctggaacg ggagcgtgcg cggtcctggc atgaagagca ggaacgggaa gcacgggtat
     6481 ggcgtggccc gtcaataggg atatgacggt gagttgttcc gggaggttgc cagatggtac
     6541 cggaacgcgt taaaaacgca tccgggcgcg attctggcgt gtcgtttttg ttgctgtgtt
     6601 ttgcctcttt gccagatcgc gctcattcct cagcctcatc ccgcgatgtc tgcgtatgtc
     6661 atcaactgaa aagatgg
//
LOCUS       DAJVSY010000195         6627 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.197, whole genome shotgun sequence.
ACCESSION   DAJVSY010000195 DAJVSY010000000
VERSION     DAJVSY010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6627)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6627)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6627
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.197"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..357
                     /locus_tag="OQQ19_003760"
     CDS             <1..357
                     /locus_tag="OQQ19_003760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417590.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805214.1"
                     /translation="AITALNFYQGDVPSVMIRIQPENMSPFIIDISTGEHDNYIIQTL
                     DVGTFAPFGEQCTCSAVNKKELECIKETISKYCAKFTQKEAILTAPTHFNKTCITSDC
                     WQILFFSPDHFNNDFY"
     gene            379..1311
                     /locus_tag="OQQ19_003761"
     CDS             379..1311
                     /locus_tag="OQQ19_003761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005056257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805215.1"
                     /translation="MFPVSSIGNDISSDLVRRKMNDLPEIPIENNLEALAPGIEKLKQ
                     TSIQMVTLLNALQPGGKCIITGDFQKELAYLQNVILYNDSFLRLDFLGYNAQIIQRSD
                     NTCELTINEPLKNQEISTGNINANCPLKDIYNEIRRLNATFSCGTGDIVDLSSLDLRN
                     VDLDYYDFTDKHMANTILNPFKLDSTNFTNANMFQVNFVSSTQNATISWDYLLKITPV
                     LISISDMYSEEKIKFVESCLNELGDITEEQLKIMRFAIIKSIPRATLTDKLENELTKE
                     IYKSSSKINNCLNRIKLPEMKEFSSKKKHMITSI"
     gene            complement(1946..2322)
                     /gene="rnpB"
                     /locus_tag="OQQ19_003762"
     ncRNA           complement(1946..2322)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="OQQ19_003762"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(2355..3500)
                     /gene="garK"
                     /locus_tag="OQQ19_003763"
     CDS             complement(2355..3500)
                     /gene="garK"
                     /locus_tag="OQQ19_003763"
                     /EC_number="2.7.1.165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312029.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate 2-kinase"
                     /protein_id="HCS1805216.1"
                     /translation="MKIVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSVPVADG
                     GEGTVEAMIAATQVSERHAWVTGPLGEKVNASWGISGDGKTAFIEMAAASGLELVPAE
                     KRDPLVTTSRGTGELILQALESGATNIIIGIGGSATNDGGAGMVQALGAKLCDANGNE
                     IGFGGGSLNTLNDIDISGLDPRLKDCVIRVACDVTNPLVGDNGASRIFGPQKGASEAM
                     IVELDNNLSHYAEVIKKALHVDVKDVPGAGAAGGMGAALMAFLGAELKSGIEIVTTAL
                     NLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSLTDDVGVVH
                     QHGIDAVFSVLTSIGTLDEAFRGAYDNICRASRNIAATLAIGMRNAG"
     gene            complement(3597..4487)
                     /gene="garR"
                     /locus_tag="OQQ19_003764"
     CDS             complement(3597..4487)
                     /gene="garR"
                     /locus_tag="OQQ19_003764"
                     /EC_number="1.1.1.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312030.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxy-3-oxopropionate reductase"
                     /protein_id="HCS1805217.1"
                     /translation="MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAA
                     GAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLA
                     SREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV
                     HIGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLD
                     AKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGT
                     ADHSALACYYEKLAKVEVTR"
     gene            complement(4517..5287)
                     /gene="garL"
                     /locus_tag="OQQ19_003765"
     CDS             complement(4517..5287)
                     /gene="garL"
                     /locus_tag="OQQ19_003765"
                     /EC_number="4.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxyglucarate aldolase"
                     /protein_id="HCS1805218.1"
                     /translation="MNNDVFPNKFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWL
                     VLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVET
                     KEEAEQAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDN
                     VDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAP
                     VEADARRYLEWGATFVAVGSDLGVFRSATQKLADTFKK"
     gene            complement(5303..6601)
                     /gene="garP"
                     /locus_tag="OQQ19_003766"
     CDS             complement(5303..6601)
                     /gene="garP"
                     /locus_tag="OQQ19_003766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005155249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactarate/glucarate/glycerate transporter
                     GarP"
                     /protein_id="HCS1805219.1"
                     /translation="MHTRYLILLIIFIVTAVNYADCATLSIAGTEVAKELQLSTVSMG
                     YIFSAFGWAYLLMQIPGGWLLDKFGSKKVYTYSLFFWSLFTFLQGFVDMFPLAWAGIS
                     MFFMRFMLGFSEAPSFPANARIVAAWFPTKERGTASAIFNSAQYFSLALFSPLLGWLT
                     FAWGWEHVFTVMGVIGFVLTALWIKLIYNPTDHPRMSAEELKFISENGAVVDMDHKKP
                     GSAAASGPKLHYIKQLLSNRMMLGVFFGQYFINTITWFFLTWFPIYLVQEKGMSILKV
                     GLVASIPALCGFAGGVLGGVFSDYLIKRGLSLTLARKLPIVLGMLLASTIILCNYTNN
                     TTLVVMLMALAFFGKGFGALGWPVISDTAPKEIVGLCGGVFNVFGNVASIVTPLVIGY
                     LVSELHSFNAALVFVGCSALMAMVCYLFVVGDIKRMELQK"
BASE COUNT         1815 a         1725 c         1443 g         1644 t
ORIGIN      
        1 gcaattactg cattgaattt ctatcaaggc gatgttcctt ctgtcatgat ccgaatccaa
       61 ccggaaaata tgagtccatt catcatagat atttctacag gagaacatga taattatatc
      121 atacaaacat tagatgtagg cacttttgca ccttttggtg aacaatgtac ttgctcagcc
      181 gtcaataaaa aagagctgga atgtattaag gagacgattt ctaagtattg cgcaaagttc
      241 acccaaaaag aagccatctt aacagcccct acgcacttta ataaaacctg cattacttca
      301 gattgttggc aaattctctt tttttcaccc gatcatttta ataatgattt ttattgatta
      361 tttataaagg ataaaataat gttccctgtt tcatcaattg gtaatgatat tagtagtgat
      421 ttagtccgtc gaaaaatgaa tgaccttcct gaaatcccca tagaaaataa tctcgaagca
      481 ctagcaccag gtatagaaaa actaaaacag acctctattc aaatggtcac tttacttaac
      541 gcgttacaac caggtggaaa atgtattatc actggtgatt ttcaaaaaga attagcgtac
      601 ttacaaaatg taattcttta taatgactcg tttcttcgtc tggatttttt aggttataac
      661 gcccaaatta ttcaacgatc ggacaatacc tgcgaactta ccattaatga accgttaaaa
      721 aaccaggaaa tatctacagg caatatcaat gctaattgtc cattaaaaga tatttacaat
      781 gaaatcagga ggttgaacgc aacctttagt tgtgggactg gagatatagt tgatctatcc
      841 tctctggact tacgtaatgt cgatttagat tattatgatt tcacagataa acatatggct
      901 aatactattc taaatccttt taaattggat tcaacaaatt ttactaatgc caacatgttt
      961 caggttaatt ttgttagttc aacacaaaac gccacaatct cctgggatta tttactaaaa
     1021 ataacgcctg ttttaataag tattagcgat atgtattctg aagaaaaaat caagtttgtc
     1081 gaaagttgtt taaatgagct tggagacatt accgaagaac aattaaaaat tatgagattt
     1141 gcaattataa aatctatacc aagggcaact cttacagata aattagaaaa tgaattaaca
     1201 aaagaaatat ataaaagctc atcgaaaatc aacaattgct tgaacagaat taaattacca
     1261 gagatgaaag aattctcatc aaaaaaaaaa catatgatta catcgatata atcattgaag
     1321 attatgaaaa tatcaaagaa aatgcttatc tggtcgtccc ccaaattaat tatactatgg
     1381 atttaaacat agaagactcc agctcagaag agttaatacc ctcgagaaag acgaaaattc
     1441 ttcggacaat ggctttgaag tcgaagaata taacgcatat gaagcatata actcagagaa
     1501 tctatatttt accagagagg aatatacgta tgattacgac ctttcaaatg caatatagac
     1561 ttaataactt cttacaaaat ctataattaa taccgtagat attcattcat cttaccctgt
     1621 gcaccaaaag caaaaactca ctgacgcggg tttgaaactg atggcaaccg caaaaatgcc
     1681 tgatgcgcta cgcttatcag gcctacgcca tctctgcaat atattgaatt tgcgtgcttt
     1741 tgtaggcagg ataaggcgtt cacgccgcat ccggcatgaa taaagcgcac tcaacaatct
     1801 gaaacccgcc ggaacggttt attacgtaca tcaggtgaaa ctgaccgata agccgctttc
     1861 ttttgggtat agtgtcgtgg acagtcattc atctttctgc ccctccaaaa gcaaaaaccc
     1921 gccgaagcgg gtttttacgt aaatcaggtg aaactgaccg ataagccggg ttctgtcgtg
     1981 gacagtcatt catctaggcc agcaatcgct cactggctca agcagcctac ccgggttcag
     2041 tacgggccgt accttatgaa cccctatttg gccttgctcc gggtggagtt taccgtgcca
     2101 cggactgtta ccagccgcgc ggtgcgctct taccgcaccc tttcaccctt acctgatccc
     2161 gcttgcgcgg gccatcggcg gtttgctctc tgttgcactg gtcgtgggtt tcccccccag
     2221 gcgttacctg gcaccctgcc ctatggagcc cggactttcc tcccctccgc ccgtctcccc
     2281 cgaagaggac gacgacgaag cggcgactgt ctggtcagct tcggcgcgca gtatagaggg
     2341 tttgcgcgcc cttgtcaccc cgcgttgcgc attccaatcg ccagtgtcgc ggcgatatta
     2401 cgtgaagcac ggcagatatt gtcataagcc ccgcggaatg cttcgtccaa cgtacctatg
     2461 ctggtcaata cgctgaagac cgcatcaatg ccatgctgat gtacaacgcc aacatcatcg
     2521 gtcaggctac ccgcaatgcc aatcaccggt ttatggtact tcttcgccac gtttgcgaca
     2581 ccaatcggta ccttgccgtg aatactctgg ctgtcaatac gcccttcacc ggtgatcacc
     2641 agcgtacaat cgtgaatatg ttcttccaga ttcagcgccg tagtgacgat ttcaatacca
     2701 cttttcagtt ccgcaccaag aaacgccatc agcgccgcgc ccataccgcc cgcagctcct
     2761 gcgccgggga catctttcac atcaacatgc agcgcttttt taatgacctc ggcatagtga
     2821 gagaggttat tgtccagctc aacaatcatc gcttcactgg ctcccttttg tgggccaaag
     2881 atgcgcgatg cgccgttatc gcccaccagc ggattggtga catcacaagc gacgcgaatg
     2941 acgcaatctt ttaagcgcgg atcgaggccg gaaatatcaa tatcattcag agtattaaga
     3001 ctaccgccgc caaaaccaat ttcattgccg ttggcgtcgc ataatttcgc ccccagcgcc
     3061 tgtaccatgc ctgcgccgcc atcatttgta gcgctgccgc caatgccgat aataatgttt
     3121 gtcgcaccgc tctccagcgc ctgcaggatt aactcgcctg tgccgcgtga agtggtcacg
     3181 agtggatcgc gtttttccgc aggtaccagc tccagcccac tggccgccgc catttcaata
     3241 aacgcggttt tgccatcgcc ggagatcccc caactggcat tcactttctc gcccaacggc
     3301 cctgtaaccc aggcgtgacg ttcggaaacc tgggtggctg caatcatcgc ttccaccgtt
     3361 ccttcgccac cgtcggcaac cggaacagaa acgtactgtg catcaggaaa aatttcccga
     3421 aatccttttt ctatcgcctg cgcaacctcg ctggcagata aactttcttt ataagagtct
     3481 ggggcgatta cgattttcat acctatgcct gttaccacat gacgccggag ggcgtttctc
     3541 ttattcggcg tggattccag gcccggattg caatacgcca tccgggcacg acgtcattaa
     3601 cgagtaactt cgactttcgc cagtttttcg tagtagcacg ccagagcgct atgatccgcc
     3661 gttcctaaac catctgcacg cagtgcctgc atcatctcca taaccgcagc tgtgagcggc
     3721 agttgcgcgc cgacgccgtg agaagtatcc agcgcattcg ccagatcctt aatatgcaga
     3781 tcaatgcgga agcccggctt gaagttgcgg tccatcacca tcggcgcttt ggcatccagc
     3841 acggtactgc ccgccagccc accgcgaatt gcctgataaa ccaggtccgg gttaacgccc
     3901 gctttagttg ccagcgttaa cgcttctgac atcgcagcaa tattcagcgc cacaatgacc
     3961 tgatttgcca gtttggtgac gttacctgca ccgatttccc cgatatgcac cacggaaccc
     4021 gccatcgctt tcatcaaatc atagtatttg tcgaaaatag ccttgtcgcc gcccaccatc
     4081 actgacagcg taccgtcgat ggctttcggt tcaccgccgc tcaccggagc atccagcata
     4141 tcaatgcctt tcgctttcag cgcttcgctg atttcacggc ttgccagcgg tgcgatagaa
     4201 ctcatatcga tcaataccgt acctggcttc gcgccttcaa taatgccatt ctcacccagc
     4261 gccacctctt tcacatgagg ggagtttggc agcatggtta tgatgacgtc gcactgttca
     4321 gcgatcgctt tagccgtaga cgctgtttct gcacctgcag caatcacgtc agcaatagct
     4381 tctgggttac ggtcagcaac caccagcgag taacctgctt tcagaaggtt tttactcatt
     4441 ggtttaccca taatccccag gccaataaaa ccaactttca tagtcatatc aatcatctct
     4501 cttgttgcgg tggtggttat tttttaaagg tatcagccag tttctgagtg gcagagcgga
     4561 agacgccaag atcgctgccg acagccacaa acgtcgcgcc ccattccaga taacgacgcg
     4621 catcggcttc gaccggcgcg agaataccgc tgggtttgcc gtgcgcactg gcacggttaa
     4681 aaatatgctg aattgctttt tgtacatccg gatgcgaggc attgccgaga tggcccaatg
     4741 ccgcagccag atcgctgggg ccgacgaaga taccgtctac accttcggta gcggcaatag
     4801 catcgacgtt atctacgccc tgctgacttt ctatctggac cagaatagtg atgttcttgt
     4861 tcgactgagc gaaataatcc gccacggtgc caaacatatt ggcgcggtga gaaacggaga
     4921 cgccgcgaat gccttccggc gggtaacgag ttgatgccac cgcctgctct gcttcctctt
     4981 ttgtttctac aaaaggaatc aggaaattat agaaaccgat atccagaaga cgcttaataa
     5041 ttaccggctc gttggtcggc actcgcacta ctggcgcgct ggcgctgcct ttcagggcca
     5101 ttaactgcgg aataaacgtg gaaatatcgt ttggcgcatg ttcgccatcc agcaccagcc
     5161 agtcaaaccc agccaaacca agaacttcag tgctaatcgg gttagagagt gctgaccagc
     5221 aaccaatttg tacctgtttc gcagccagtg cggctttgaa tttattcggg aaaacatcgt
     5281 tattcatcgc ttataccttt gcttatttct gcaattccat acgtttaatg tcgccaacta
     5341 cgaagaggta gcagaccatc gccatcagcg ctgaacatcc cacgaaaacc agtgctgcat
     5401 tgaaggagtg cagttcactt accaggtagc caatcaccag tggagtgaca atggaggcaa
     5461 cattgccaaa gacgttaaag acgccgccac agaggccaac aatctctttc ggcgcggtgt
     5521 cagaaatcac cggccagccc agagcaccaa atcctttgcc aaaaaaagcc agcgccatca
     5581 gcatgaccac cagcgtggtg ttgttggtgt agttacataa gatgatggtg gaagccagca
     5641 acattcccag cacaatcggt agcttacgtg ccagggtcag ggataaaccg cgtttgatca
     5701 gataatccga gaagacacct cccagcacgc cgcccgcaaa accacacagt gccggaatcg
     5761 aggcgaccag acccactttc agaatcgaca tgcctttttc ctgcaccaga taaatcggga
     5821 accaggtgag gaagaaccag gtgatggtgt tgataaaata ttgtccgaaa aatacgccca
     5881 acatcatgcg gttagagagc aattgcttga tgtaatgcag tttgggaccg cttgctgccg
     5941 cgctgcccgg ctttttgtgg tccatatcga ccaccgcgcc attttcagag ataaacttca
     6001 gctcttccgc agacatacgt gggtgatctg tcgggttata aatcaacttg atccacagcg
     6061 ccgtcagcac aaaaccaatc acccccataa cggtgaagac gtgctcccag ccccaggcga
     6121 aagtcagcca gccaagcaga ggcgaaaaga gcgccagcga gaaatattgc gccgagttaa
     6181 agatggcgga ggcagtacca cgttctttcg tcgggaacca ggcggcgaca atacgggcgt
     6241 tcgccgggaa tgatggcgct tccgagaagc cgagcataaa gcgcataaag aacatagaga
     6301 tccctgccca ggccagcggg aacatatcaa caaagccttg caggaaggtg aatagcgacc
     6361 agaaaaagag gctgtaggtg taaacttttt tcgagccaaa cttatcaagc agccagccgc
     6421 cgggaatttg catcagcagg taggcccagc caaaagcgga gaagatgtaa cccatcgaaa
     6481 ccgtacttaa ctgcaactct tttgccactt cggtaccagc aatagacagc gttgcacaat
     6541 cggcgtagtt aacggcggta acaataaaaa taatcagtaa tattaaatag cgggtatgca
     6601 cgcctttctt ttttacgtca acggtgt
//
LOCUS       DAJVSY010000196         6590 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.198, whole genome shotgun sequence.
ACCESSION   DAJVSY010000196 DAJVSY010000000
VERSION     DAJVSY010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6590)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6590)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6590
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.198"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            27..173
                     /locus_tag="OQQ19_003767"
     CDS             27..173
                     /locus_tag="OQQ19_003767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001163619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter"
                     /protein_id="HCS1805220.1"
                     /translation="MQHGHIAQRGNHDELAQQSGWYRDMYRYQQLEAALDDAPEIREE
                     AVDA"
     gene            166..1947
                     /locus_tag="OQQ19_003768"
     CDS             166..1947
                     /locus_tag="OQQ19_003768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SmdB family multidrug efflux ABC transporter
                     permease/ATP-binding protein"
                     /protein_id="HCS1805221.1"
                     /translation="MRSFSQLWPTLKRLLAYGSPWRKPLGIAVLMMWVAAAAEVSGPL
                     LISYFIDNMVAKNNLPLKMVAGLAAAYVGLQLFAAGLHYAQSLLFNRAAVGVVQQLRT
                     DVMDAALRQPLSEFDTQPVGQVISRVTNDTEVIRDLYVTVVATVLRSAALVGAMLVAM
                     FSLDWRMALVAIMIFPVVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEIINGMSVIQ
                     QFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSSLILCGLLMLFGFSAS
                     GTIEVGVLYAFISYLGRLNEPLIELTTQQAMLQQAVVAGERVFELMDGPRQQYGNDDR
                     PLQSGTIEVDNVSFAYRDDNLVLKNINLSVPSRNFVALVGHTGSGKSTLASLLMGYYP
                     LTEGEIRLDGRPLSSLSHSALRQGVAMVQQDPVVLADTFLANVTLGRDISEERVWQAL
                     ETVQLAELARSMSDGIYTPLGEQGNNLSVGQKQLLALARVLVETPQILILDEATASID
                     SGTEQAIQHALAAVREHTTLVVIAHRLSTIVDADTILVLHRGQAVEQGTHQQLLAAQG
                     RYWQMYQLQLAGEELAASVREEESLSA"
     gene            2128..2466
                     /gene="glnK"
                     /locus_tag="OQQ19_003769"
     CDS             2128..2466
                     /gene="glnK"
                     /locus_tag="OQQ19_003769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HCS1805222.1"
                     /translation="MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAE
                     LYRGAEYSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRI
                     RTGEADEAAL"
     gene            2496..3782
                     /gene="amtB"
                     /locus_tag="OQQ19_003770"
     CDS             2496..3782
                     /gene="amtB"
                     /locus_tag="OQQ19_003770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter AmtB"
                     /protein_id="HCS1805223.1"
                     /translation="MKIATIKTGLASLAMLPGLVMAAPAVADKADNAFMMICTALVLF
                     MTIPGIALFYGGLIRGKNVLSMLMQVTVTFALVCILWVVYGYSLAFGEGNNFFGNVNW
                     LMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTL
                     SYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPH
                     NLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRG
                     KPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPC
                     DVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA
                     FIGYKLADLTVGLRVPEEQELEGLDVNSHGENAYNA"
     gene            complement(3831..4691)
                     /gene="tesB"
                     /locus_tag="OQQ19_003771"
     CDS             complement(3831..4691)
                     /gene="tesB"
                     /locus_tag="OQQ19_003771"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase II"
                     /protein_id="HCS1805224.1"
                     /translation="MSQALKNLLALLNLEKIEAGLFRGQSEDLGLRQVFGGQVVGQAL
                     YAAKETVPEERLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIF
                     YMTASFQAPEAGFEHQKTMPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEV
                     RPVEFHNPLKGHVAEPHRQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIG
                     FLEPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVAST
                     VQEGVMRNHN"
     gene            4909..5481
                     /locus_tag="OQQ19_003772"
     CDS             4909..5481
                     /locus_tag="OQQ19_003772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaY family lipoprotein"
                     /protein_id="HCS1805225.1"
                     /translation="MKLVHMASGLAVAIALAACADKSADIQTPAPTANTSISATQQPA
                     IQQPNVSGTVWIRQKVALPPDAVLTVTLSDASLADAPSKVLAQKAVRTEGKQSPFSFV
                     LPFNPADVQPNARILLSAAITVNDKLVFITDTVQPVINKGGTKADLTLVPVQQTAVPV
                     QASGGATTTVPSTSPTQVNPSSAVPAPTQY"
     gene            complement(5512..5823)
                     /locus_tag="OQQ19_003773"
     CDS             complement(5512..5823)
                     /locus_tag="OQQ19_003773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706349.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HCS1805226.1"
                     /translation="MEKEDSFPQRVWQIVAAIPEGYVTTYGDVAKLAGSPRAARQVGG
                     VLKRLPEGSTLPWHRVVNRHGTISLTGPDLQRQRQALLAEGVMVSGSGQIDLQRYRWN
                     Y"
     gene            5986..6082
                     /gene="ffs"
                     /locus_tag="OQQ19_003774"
     ncRNA           5986..6082
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="OQQ19_003774"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            6202..6555
                     /locus_tag="OQQ19_003775"
     CDS             6202..6555
                     /locus_tag="OQQ19_003775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 domain-containing protein"
                     /protein_id="HCS1805227.1"
                     /translation="MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWAS
                     DVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFD
                     GKRMIYGGFESIIDE"
BASE COUNT         1444 a         1637 c         1915 g         1594 t
ORIGIN      
        1 gggatgcgtt catataaatt attgtgatgc agcacggaca tatcgcccag cgtggcaatc
       61 atgatgagtt ggcgcaacaa agcggctggt atcgcgatat gtatcgctat caacaactgg
      121 aggcggcgct cgacgacgct ccggaaattc gcgaggaggc cgtcgatgcg tagttttagc
      181 caactgtggc cgactctcaa gcgtctgtta gcgtacggtt cgccgtggcg taaaccgctg
      241 gggattgcgg tcctgatgat gtgggttgcg gcagcggcag aagtcagtgg gccgctgctt
      301 atcagctatt ttatcgacaa tatggtagcg aaaaataacc tgccgttgaa aatggttgca
      361 gggctggctg cggcgtatgt tgggctacaa ctgtttgccg ccgggctaca ttacgcgcag
      421 tcgctgctgt ttaatcgggc ggcagtaggc gtagtgcaac agttgcgtac cgacgtgatg
      481 gatgccgcat tgcgccagcc attaagcgag tttgataccc aacccgtcgg gcaggtgatt
      541 tcccgcgtca ctaatgacac tgaagtgatc cgcgatctct acgttaccgt agtggcaact
      601 gtcctgcgta gcgccgcact ggtgggcgcg atgctggtgg cgatgttcag cctcgactgg
      661 cgaatggcgc tggtggcgat aatgattttc ccggtggtgc tggtggtaat ggtgatatac
      721 cagcgttaca gcacgccgat tgtccgtcgt gtgcgcgcct atctggcgga tatcaacgac
      781 ggctttaacg aaatcatcaa tggcatgagc gttatccagc agttccgtca gcaggcgcga
      841 tttggcgaac gtatggggga ggccagtcgt tcacactata tggccaggat gcaaaccctg
      901 cgcctcgacg gttttctgct gcgtccgctg ctgagtctgt tttcatcgct cattctttgt
      961 ggcttgttga tgctgtttgg cttctccgct agcggcacca ttgaagtagg cgtgctgtat
     1021 gcgtttatca gctatcttgg gcgacttaac gaacccttaa tcgaactgac cacgcaacag
     1081 gcgatgctgc aacaggctgt tgttgctggt gagcgcgtgt ttgaactgat ggacggaccg
     1141 cgccagcaat atggcaatga tgatcgcccg ttacagagtg gcaccatcga agtcgataac
     1201 gtgtcatttg cttatcgcga tgacaatctg gtgctaaaga acattaatct ctctgtgcct
     1261 tcgcgtaact ttgtggcact ggtcgggcat accggcagtg gcaaaagcac cctcgccagt
     1321 ttattgatgg gctattaccc gctaacggaa ggtgagattc gccttgatgg tcgtccatta
     1381 agttcgctaa gtcacagcgc gctgcgccag ggcgtggcaa tggtgcagca agatccggtg
     1441 gtgctggcgg ataccttcct cgccaacgtg acgctggggc gtgatatctc cgaagaacgc
     1501 gtctggcagg cgctggaaac cgtgcaactg gcggagctgg cgcgcagcat gagtgatggt
     1561 atttatacgc cgctgggcga gcaggggaat aatctctccg tcgggcaaaa gcaactgctg
     1621 gcactggcac gcgtgttggt ggagacgccg caaatcctga tccttgatga ggcaaccgcc
     1681 agcattgact ccggtactga acaggcgatt caacatgctc tggcggctgt gcgtgaacat
     1741 accacgctgg tggtgattgc tcaccgctta tcgaccattg ttgatgccga caccattctg
     1801 gtgcttcatc gtgggcaagc cgtggagcag ggcactcacc agcaactgct ggcggcccag
     1861 ggacgctact ggcagatgta tcaactgcaa cttgcgggcg aagagctggc agccagcgtg
     1921 cgtgaagaag aatcattgag cgcctgaata gcgcaatatt tcatcgttgg tgcaaaaatg
     1981 taacgcactg tgcactgtca tagtgcgttt tcattttcaa tcttcttaac ttcctgctct
     2041 ctttctcgtt tttcatttct ggcacaccgc ttgcaatacc ttcttcgtgt agcagaacca
     2101 ttaccgaatt ctgactggag gggatctatg aagctggtga ccgtgataat caaaccattc
     2161 aagctggaag acgttcgtga agcgttatct tccattggta ttcagggcct gaccgtcacc
     2221 gaagtgaaag gtttcgggcg tcagaaaggg catgccgagc tgtaccgggg ggcggaatac
     2281 agcgtcaact tcctgccaaa agtaaaaatt gatgtggcaa ttgctgatga ccaactcgat
     2341 gaagtgatcg atatcgtcag taaggcggct tacaccggaa aaattggcga cggcaaaatc
     2401 ttcgtcgctg aattgcaacg cgtcattcgt attcgtaccg gcgaagccga cgaagcggcg
     2461 ctgtaatctc tggcacacag caacaggaac gaaaaatgaa gatagcgacg ataaaaactg
     2521 ggcttgcttc actggcgatg ctgccgggac tggtaatggc tgcacctgcg gtggccgata
     2581 aagccgacaa tgcgtttatg atgatttgta ctgcgctggt gctgtttatg actattccgg
     2641 ggattgccct gttttacggt gggttgattc gcggcaaaaa cgtgctgtcg atgctgatgc
     2701 aggtgacggt gacgtttgca ctggtctgta ttctctgggt ggtttacggt tactcgctgg
     2761 cgtttggtga gggtaacaac ttcttcggca acgttaactg gttgatgctg aaaaacatcg
     2821 aactgacggc ggtgatgggc agcatttatc agtatatcca cgtagcgttt cagggatcgt
     2881 ttgcctgcat taccgtaggc ttgatagttg gggcgctggc ggaacgaatc cgcttctcag
     2941 ctgtgttgat tttcgtggtg gtatggctga cgctctctta cattccgatt gcgcatatgg
     3001 tgtggggcgg cggtttgctg gcttctcacg gtgcactgga tttcgcgggt ggcacagtgg
     3061 tgcacattaa cgccgcaatc gccggtctgg tgggcgcgta tctgataggc aaacgcgtgg
     3121 gcttcggtaa agaggcgttt aaaccgcaca acctgccgat ggtcttcacc gggactgcca
     3181 ttctctatat cggttggttt ggctttaacg ccgggtcagc gggcacggcg aatgaaatcg
     3241 cggcactggc atttgtgaat actgtggtcg caacggcggc ggcaattctt ggctggatct
     3301 tcggtgaatg ggcgctgcgt ggtaagcctt cactgctggg ggcgtgttct ggcgcgattg
     3361 ccggtctggt cggcgtgacg ccagcgtgcg gctacattgg ggttggcggc gcgttgatta
     3421 tcggcgtggt agctggtctg gcgggcttgt ggggcgttac catgctcaaa cgcttgctgc
     3481 gggtggatga tccctgcgat gtcttcggtg tgcacggcgt ttgtggcatt gtcggctgta
     3541 tcatgaccgg gatttttgcc gccagctcgc tgggcggcgt gggcttcgct gaaggtgtga
     3601 cgatgggtca tcagttgctg gtacagctgg aaagcatcgc cattacgatc gtctggtccg
     3661 gtgtggtggc atttattggc tacaaattgg cggatctgac ggttggtctg cgtgtaccgg
     3721 aagagcagga gctagaaggg ctggatgtca acagtcacgg cgagaatgcc tataacgcgt
     3781 aacaagcact gcaaaaaaca gccggacggt tttcacctcc ggctattttt ttaattgtga
     3841 ttacgcatca ccccttcctg aacggtcgag gcaaccagta cgccgtcctg ggtataaaac
     3901 tcaccgcgca caaagccacg tgcgctggac gccgaggtgc tctccacgct atacagcagc
     3961 cattcattca aattaaacgg gcgatggaac cacatggaat ggtcaatggt ggcaatctga
     4021 atccccggtt cgagaaaacc gatgccgtgc ggctgtagag ctaccggcag gaagttaaga
     4081 tcagaagcgt aaccgagcag atactgatga acgcgcaggt catccggcac gctaccattt
     4141 gcgcggatcc acacctgacg atgtggttct gcgacgtgac ctttcagtgg gttatgaaac
     4201 tccaccggac ggacttccag cggacgatcg cagatgaatt tatctttaag cactggcggc
     4261 agcaggtgcg ccagcgattg ggcgatttgc gtttccgaag gcaggccatc aggcgctggc
     4321 gcggacggca ttgttttttg atgttcgaaa cccgcttctg gtgcctggaa agaggccgtc
     4381 atataaaaaa tcggtttgcc gttttgaata gcagcaaccc ggcgggcgct gaagctgtta
     4441 ccatcacgca gcgtttcgac atcataaata atcggtttct tactatcgcc tgggcgaaga
     4501 aagtagctgt gaaacgaatg taccagccgc tcttccggga cggtctcttt tgcagcatac
     4561 aaggcctgac ccacgacctg gccgccaaac acctggcgta aacctaaatc ttcactctgg
     4621 ccgcgaaaga gtcctgcctc aattttttcc agatttaaca atgccagtaa attttttagc
     4681 gcctgactca tataactctc cagtaacaaa gctgccgcag caagccaaag tgagttgagt
     4741 ataacgcaaa tttgccactg gtccgatggg tgcaataatc tgaattacgg gctaattaca
     4801 ggcagaaatg cgtgatgtgt gccacactta ttgacgttac tattttgtta accactcttc
     4861 cggcgaggaa agttagcccg ctggtgcatt gataataagg agaaatgaat gaaactcgtg
     4921 cacatggcca gtggtttagc ggttgcgatt gcgttggcgg cttgcgcaga taaaagcgcg
     4981 gatattcaga cgccagcccc gactgcaaat acgtctattt cagcaacaca acaacctgct
     5041 atccagcaac cgaatgtctc cggtaccgtc tggatccggc agaaagtcgc actgccgcct
     5101 gatgctgtgc tgaccgtgac actttctgac gcgtcgttag ccgatgcacc gtcaaaagtg
     5161 ctggcgcaga aagcggtgcg taccgaaggt aaacagtcac cattcagctt tgttctgcca
     5221 tttaacccgg cagatgttca gccgaacgcg cgtattctgt tgagtgcggc gattaccgtg
     5281 aatgacaaac tggtatttat taccgatacc gttcagccgg tgatcaacaa gggcggaact
     5341 aaagccgacc tgacattggt gccggtgcag caaaccgccg tgccggttca ggccagcggt
     5401 ggtgcaacga ctaccgtacc ttcgacttca ccaactcagg tgaatccgtc ttcggcagtt
     5461 ccagctccta cgcaatatta agcgacgtta accctctccg cccggagagg gttagtagtt
     5521 ccagcgataa cgctgcaagt cgatttgccc gcttcccgat accatcacac cttctgccag
     5581 taatgcctgt cgctgacgct gtaaatccgg tccggttagc gaaattgtgc cgtggcgatt
     5641 aaccacccgg tgccagggta aggtgctgcc ttcagggaga cgctttaaca caccgcccac
     5701 ctggcgcgcg gcgcggggcg atcccgccag tttcgccaca tcaccgtaag tggtgacata
     5761 gccttcggga atagcggcga cgatttgcca gacgcgttgg ggaaatgaat cttctttttc
     5821 catcttttct tcctgaggta atttttcagc ataatctgga aaaacgcccg agtgaagtcg
     5881 cattgcgcaa gaaaccagca tctggcacgc gatgggttgc aattagccgg ggcagcagtg
     5941 ataatgtgcc tgcgcgttgg ttctcaacgc tctcaatggg ggctctgttg gttctcccgc
     6001 aacgctactc tgtttaccag gtcaggtccg gaaggaagca gccaaggcag atgacgcgtg
     6061 tgccgggatg tagctggcag ggcccccacc catttctgcc tcccaccgtt tcgtcaaaaa
     6121 aacccaacat ggctaaactt taaccacaac tgacgtcgca agaattgtct ggctgcgcag
     6181 tacgcttcgg aggtatgtct gatgaagtat gttgatggtt ttgtggttgc cgttcctgcc
     6241 gataaaaagg atgcctatcg ggaaatggcc gctaaggctg cgccattgtt taaagagttt
     6301 ggcgcgcttc gtattgtcga atgctgggcc agcgatgtac cggatggcaa agtgaccgat
     6361 tttcgtatgg cggtgaaagc ggaagagaat gaagaggttg tctttagctg gattgaatac
     6421 ccttcaaaag aggtccgcga cgctgctaat caaaagatga tgtcggaccc acggatgaaa
     6481 gagttcggcg agtccatgcc gtttgacggc aagcgaatga tctatggcgg attcgagtca
     6541 atcatcgacg aataggtagc gtgacgggct gtgcggcgtg ccgtcagccc
//
LOCUS       DAJVSY010000197         6390 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.199, whole genome shotgun sequence.
ACCESSION   DAJVSY010000197 DAJVSY010000000
VERSION     DAJVSY010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6390
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.199"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..206)
                     /locus_tag="OQQ19_003776"
     CDS             complement(<1..206)
                     /locus_tag="OQQ19_003776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311770.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="knotted carbamoyltransferase YgeW"
                     /protein_id="HCS1805228.1"
                     /translation="MKTVNELIKDINSLTSHLHEKDFLLTWEQTPDELKQVLDVAAAL
                     KALRAENISTKVFNSGLGISVFRD"
     gene            685..2163
                     /locus_tag="OQQ19_003777"
     CDS             685..2163
                     /locus_tag="OQQ19_003777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001251544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HCS1805229.1"
                     /translation="MELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAG
                     TGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTP
                     VILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK
                     IFATMIDNMDQGVLVVDDESRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTH
                     GHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGEC
                     RVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPE
                     QLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAR
                     EILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED
                     IEHWCITFYICIPVVWDRFILALLPMSSKYCVSIVGPETCAS"
     gene            2046..2462
                     /locus_tag="OQQ19_003778"
     CDS             2046..2462
                     /locus_tag="OQQ19_003778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004993937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterial regulatory, Fis family protein"
                     /protein_id="HCS1805230.1"
                     /translation="MHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLME
                     YLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMI
                     REALSRHNSKKQVADELGIGIATLYRKIKKYELLNT"
     gene            complement(2502..2981)
                     /gene="xdhC"
                     /locus_tag="OQQ19_003779"
     CDS             complement(2502..2981)
                     /gene="xdhC"
                     /locus_tag="OQQ19_003779"
                     /EC_number="1.17.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase iron sulfur-binding
                     subunit XdhC"
                     /protein_id="HCS1805231.1"
                     /translation="MNHSETITIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGC
                     CVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKGGKLSHVQQAYAKSGAVQ
                     CGFCTPGLIMATTAMLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCEKTK"
     gene            complement(2978..3856)
                     /gene="xdhB"
                     /locus_tag="OQQ19_003780"
     CDS             complement(2978..3856)
                     /gene="xdhB"
                     /locus_tag="OQQ19_003780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase FAD-binding subunit XdhB"
                     /protein_id="HCS1805232.1"
                     /translation="MFDFASYHRAATLADAINLLANNPQAKLLAGGTDVLIQLHHHND
                     RYRHIVDIHNLAELRGITLAEDGSLRIGSATTFTQLIEDPITQRHLPALCAAAMSIAG
                     LQIRNVATYGGNICNGATSADSATPTLIYDAKLEIHSPRGVRFVPINGFHTGPGKVSL
                     EHDEILVAFHFPPQPKEHAGSAHFKYAMRDAMDISTIGCAAHCRLDNGNFSELRLAFG
                     VAAPTPIRCQHAEQTAQNAPLNLQTLEAISESVLQDVAPRSSWRASKEFRLHLIQTMT
                     KKVISEAVAAAGGKLQ"
     gene            complement(3867..6164)
                     /gene="xdhA"
                     /locus_tag="OQQ19_003781"
     CDS             complement(3867..6164)
                     /gene="xdhA"
                     /locus_tag="OQQ19_003781"
                     /EC_number="1.17.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase molybdenum-binding
                     subunit XdhA"
                     /protein_id="HCS1805233.1"
                     /translation="MEAREATATGESCMRVDAIAKVTGRARYTDDYVMAGMCYAKYVR
                     SPIAHGYAVSINDEQARSLPGVLAIFTWEDVPDIPFATAGHAWTLDENKRDTADRALL
                     TRHVRHHGDAIAIVVARDELTAEKAAQLVSIEWQELPVITTPEAALAEDAAPIHNGGN
                     LLKQSTMSTGNVQQTIDAADYQVQGHYQTPVIQHCHMESVTSLAWMEDDSRITIVSST
                     QIPHIVRRVVGQALDIPWSCVRVIKPFVGGGFGNKQDVLEEPMAAFLTSKLGGIPVKV
                     SLSREECFLATRTRHAFTIDGQMGVNRDGTLKGYSLDVLSNTGAYASHGHSIASAGGN
                     KVAYLYPRCAYAYSSKTCYTNLPSAGAMRGYGAPQVVFAVESMLDDAATALGIDPVEI
                     RLRNAAREGDANPLTGKRIYSAGLPECLEKGRKIFEWEKRRAECQNQQGNLRRGVGVA
                     CFSYTSNTWPVGVEIAGARLLMNQDGTINVQSGATEIGQGADTVFSQMVAETVGVPVS
                     DVRVISTQDTDVTPFDPGTFASRQSYVAAPALRSAALLLKEKIIAHAAVMLHQSAMNL
                     TLIKGHIVLVERPEEPLMSLKDLAMDAFYHPERGGQLSAESSIKTTTNPPAFGCTFVD
                     LTVDIALCKVTINRILNVHDSGHILNPLLAEGQVHGGMGMGIGWALFEEMIIDAKSGV
                     VRNPNLLDYKMPTMPDLPQLESAFVEINEPQSAYGHKSLGEPPIIPVAAAIRNAVKMA
                     TGVAINTLPLTPKRLYEEFHLAGLI"
BASE COUNT         1594 a         1511 c         1615 g         1670 t
ORIGIN      
        1 ttgtcgcgga atacggaaat acctaatcca ctattaaaga ctttggttga gatgttttca
       61 gcacgcagtg cttttaatgc tgcggcaacg tccagtactt gtttcagttc atctggcgtc
      121 tgttcccacg ttaacaaaaa atctttctcg tgaaggtgag aggtcagcga attgatatcc
      181 ttaatcagct cattaacagt tttcatcata aagtcccggt agtggaatga caggcaaagt
      241 ggtttatttc actgtgactt gccaaagtga ttggtgtttt cacagctata cctgggacta
      301 acaataagtg tgccagaatt atccgcgcgg ctgcaaaaga ctaatttgac ggataatgtg
      361 tggggttgat cacaaattga tgccagcttc tggttgtttg taaaatacga aaacgtttgg
      421 ctttttttat cgcgttattt atttgctgct aagtatcaga aataagataa aggggcaggc
      481 tatctctctt cagtttgata aactcaccgc cgtaattctc atattgatat agaaatgtga
      541 tatctcttcc ataatttcat tagaaaatga taaaaatctt atgtttttat caaagccaat
      601 ttcgcctgag ttaatatcat catgatctgt gaaccatcaa cgtcttcaat gatcgacttt
      661 taagtaagtc tggaaggtaa agctatggag cttgctacta cgcagtcagt attgatgcaa
      721 attcaaccga caattcagcg ttttgccaga atgcttgcca gcgttttgca gcttgaggtt
      781 gagatcgttg atgaaaactt gtgtcgcgtc gccggaacgg gcgcgtatgg gaagtttctt
      841 ggtcgccagt tgagcggcaa ctcacgcctg ctccgccacg tcctggaaac gaaaactgaa
      901 aaagttgtga cacagtctcg cttcgatccc ctttgcgaag gttgcgatag taaagaaaat
      961 tgccgtgaaa aagcatttct gggtacgcct gtcattttac aggatcgttg tgttggggtg
     1021 ataagtttga ttgccgttac ccacgagcaa caagagcata tcagtgataa tttacgcgaa
     1081 ttttctgatt atgttcgcca tatatccacc atttttgttt cgaaacttct ggaggatcag
     1141 gggccaggag ataacatcag taaaatattc gcgaccatga tcgataatat ggatcagggc
     1201 gtattagttg ttgatgatga aagtcgggtt cagtttgtta atcagactgc cttaaaaaca
     1261 cttggtgttg tacaaaataa tattattggg aaacctatcc gtttcagacc attaacattt
     1321 gagagtaatt ttactcatgg acatatgcag catattgttt cgtgggacga taaaagtgaa
     1381 ttaatcattg gtcaattgca taacattcag ggccgacaat tatttttaat ggcatttcac
     1441 caatcgcata ccagtttttc tgtagcaaat gcacctgatg aaccacatat tgaacaattg
     1501 gttggcgagt gccgtgttat gcggcaatta aaacgactca ttagccgtat tgcacccagc
     1561 ccatccagcg ttatggtggt tggtgaaagc ggcacgggta aagaagtcgt cgcccgagca
     1621 atccataagt tgagcggaag acggaataaa ccctttattg ctatcaactg tgccgcgatt
     1681 ccggagcagc ttctggaaag cgaactgttc ggttatgtta aaggcgcatt tactggcgct
     1741 tctgccaacg gtaaaacagg gttgattcag gcggcgaata cgggcacgct gtttctcgat
     1801 gaaataggtg atatgccatt aatgttgcag gctaaattac tgcgcgctat tgaggcgcgt
     1861 gaaattctgc cgattggtgc cagtagccca atacaagtcg acattcgcat catttctgca
     1921 actaatcaga atttggccca gttcattgcc gaaggtaaat tccgcgaaga tctcttctac
     1981 cgacttaatg ttatcccgat aactctgcca ccgctgcgtg aacgtcagga agatattgaa
     2041 cattggtgca ttacttttta catctgcata cccgtcgtct gggatcggtt tatcctggca
     2101 ttgctcccga tgtcgtcgaa atattgcgta agcatcgttg gcccggaaac ctgcgcgagt
     2161 taagcaattt gatggaatat ctggttaacg tagttccttc aggtgaagtt atcgacagca
     2221 cgctattgcc gccaaatctg ctgaataatg gcacaacgga gcaaagtgat gtaacagagg
     2281 tcagtgaggc gcacctgtca ctcgatgatg cgggcggcac ggcgctggag gagatggaaa
     2341 agcaaatgat ccgcgaggcg ctttcacgtc ataacagcaa gaagcaagtt gctgatgaac
     2401 tgggcatcgg cattgctacg ctctatcgca agattaagaa atatgagttg ttaaacacat
     2461 aacctcagtg aatccggcct gaattcaggc cggatatcct tttacttcgt tttctcgcaa
     2521 tccagaactg tatttacaat catctgatac cccgtgcagc gacaaagatt tcccgccagt
     2581 ccgcgacgaa tttccgtaat ggttaatggc ttctcgcgtg gtttcgccag cattgccgtg
     2641 gtagccataa tcaggccagg cgtacaaaac ccgcactgca ctgcgccgga tttcgcataa
     2701 gcctgctgaa catgagaaag ttttccgcct ttcgcttcac cttccagcgt gcggatctct
     2761 tttccttcag cccaggcggc aaggtataag caactgtcta ttgctgtgcc gtcgaccaac
     2821 accgtacagg caccacattc acccacgcag cacccttgtt tgacacttag cagtccttgt
     2881 tcgcggagta attccgagag cggcgtgcct ggtgcggcgt gaagctgaaa aggcatcccg
     2941 ttaatggtgc attcgatggt aattgtttcg ctgtgattca ttgcaatttt ccccccgccg
     3001 cggcgacggc ttcgctaatc acttttttgg tcatcgtctg gatgagatgc agacgaaact
     3061 ctttactggc ccgccatgaa gaacgcgggg cgacatcttg caggacagat tcgctgatag
     3121 cttccagcgt ttgcaggttt aatggcgcat tttgtgcagt ctgttcggca tgttggcagc
     3181 gaatcggcgt tggcgcggca acaccaaatg ccaggcgtaa ttcgctgaaa ttgccgttat
     3241 ccagtcggca atgtgcggcg cagccaatcg ttgaaatatc cattgcgtcg cgcatggcat
     3301 atttaaaatg cgcgctgccc gcgtgttctt tcggctgtgg cggaaaatga aaggcgacga
     3361 ggatttcgtc atgctcaaga gacactttgc ccggcccggt gtgaaagcca ttaatcggga
     3421 cgaaacgaac accgcgcggg gagtggatct ccagtttcgc gtcataaatt agcgttggcg
     3481 tggcagaatc tgcgctggtg gcaccgttgc aaatatttcc accgtaggta gcgacgttac
     3541 ggatctgcag tccagcaatg gacatggccg cagcacataa cgccgggaga tgacgttgag
     3601 ttataggatc ttctattagc tgggtaaatg tcgttgcaga gccgatacgt agcgagccat
     3661 cttccgccag cgtaattccc cgcagctccg ccagattatg aatatcaaca atatggcgat
     3721 aacggtcatt gtgatggtgg agctgaatca gtacgtcagt gccaccggcg agcagtttgg
     3781 cctgcgggtt gttagccagc aggttgatgg catcggcaag ggttgctgcg cgatggtaag
     3841 aagcaaaatc aaacatgatg ttatcctcaa atcaatcctg ccagatggaa ctcttcatat
     3901 aaccgttttg gcgtcagcgg cagtgtattg attgcaacac cggtagccat cttcaccgcg
     3961 ttacgaatag cagcggcaac aggaattatt ggtggctcac ccagtgactt atgtccgtat
     4021 gcggattgcg gctcattgat ttcgacgaac gcgctttcca gttgtggcag atccggcatg
     4081 gtcggcattt tgtaatccag cagattgggg ttacggacca cgccgctttt agcatcgatg
     4141 atcatctctt caaatagcgc ccagccaatg cccattccca ttccgccgtg tacctgacct
     4201 tctgccagca gtggattaag aatatgccct gaatcatgaa cgttgaggat gcggttgatg
     4261 gtgactttgc acagcgcaat atcgaccgtc agatcaacaa aggtacagcc aaacgccggt
     4321 gggttagtgg tggttttgat ggagctttca gcagagagct gcccgccgcg ttcagggtgg
     4381 tagaaagcgt ccatcgccaa atcttttaac gacattaacg gctcttccgg tcgttcaacc
     4441 agcacgatat ggccttttat cagggtcaga ttcatcgctg actgatgtag catgactgcg
     4501 gcgtgagcga tgattttctc ttttaataat agtgccgcac tgcgcagcgc aggcgcggca
     4561 acatagctct ggcgtgaggc aaatgtgccg ggatcgaacg gcgtaacgtc ggtatcttga
     4621 gttgaaataa cgcgaacgtc gctgaccgga acccccacgg tttctgccac catttgcgag
     4681 aagacggtgt cggcaccctg accgatttcc gtcgcgccgc tttgcacgtt gatggttcca
     4741 tcctgattca tcagaaggcg cgcgcctgct atttctacgc cgacaggcca ggtgttagag
     4801 gtgtagctaa aacaggcgac gccaacgccg cggcgcaaat tgccttgctg gttctggcat
     4861 tctgcacggc gtttttccca ttcaaagatt ttccggcctt tttcaagaca ctccggcaac
     4921 cctgcgctgt aaatacgttt gcccgtgagc ggattagcat ctccttcgcg ggcggcgttg
     4981 cgtaaacgaa tttcaacagg atcaatacct aacgctgtcg cggcgtcatc aagcatagac
     5041 tcaacggcaa atacgacttg tggcgcgcca taaccacgca tcgcaccagc cgaggggagg
     5101 ttggtatagc aggtctttga actgtaagcg taggcacaac gaggataaag gtaagcgact
     5161 ttattccccc ccgcagaagc gatggagtgc ccgtgagatg cataagcgcc ggtgttagac
     5221 agaacatcca gactataacc tttcaatgtt ccgtcgcggt tcacgcccat ttgcccgtca
     5281 atggtaaaag cgtggcgggt acgggttgcg aggaaacact cttcacggct aagggaaact
     5341 ttcaccggaa tgccgccaag cttgctggtc aggaatgccg ccattggctc ttccagtaca
     5401 tcctgtttat taccaaaacc gccaccgaca aatggtttga tgactcgtac gcatgaccag
     5461 ggaatatcca gcgcctgacc aaccacgcgg cgaacaatgt gcgggatctg ggtgctggaa
     5521 acgatggtaa ttcgcgagtc atcctccatc cacgccagcg atgttacgct ttccatgtga
     5581 caatgttgaa taacgggggt ctgatagtgc ccctgtacct ggtagtcggc ggcatcgatt
     5641 gtttgttgga cattacccgt cgacatcgtg ctttgtttca gtaaattgcc accgttatgg
     5701 attggtgcag cgtcttctgc cagcgccgct tctggcgtgg tgataacggg taattcttgc
     5761 cactcaatgc tgaccaattg cgccgctttt tctgccgtga gttcatcgcg ggccacgacg
     5821 atggcaatgg cgtcaccatg atgacgaaca tggcgagtta gcagtgcgcg atcggcggta
     5881 tcgcgcttgt tttcgtcaag tgtccaggca tgcccagctg tagcgaatgg aatatcaggc
     5941 acatcttccc aggtaaaaat cgccagtacg cccggcaaac ttctggcttg ttcatcatta
     6001 atacttacgg cataaccatg tgcgataggg ctacgtacat atttcgcata acacatgccc
     6061 gccataacat aatcgtcagt atatcgtgcc cgcccggtga ccttagcaat ggcatcgacg
     6121 cgcatgcatg attcacccgt agcggttgct tcccgcgctt ccatagaaat cccctcgatt
     6181 tgaacatttg gttcttatgg caaagattta gtctaagcag gcaagattta cgccagaaac
     6241 gacgataagc gttaggggag gtaggaagtg tgatgacgtt aaaaaaacac agatatgata
     6301 cgaaacagga gtctgaatag gggcagtgat acgtatcaat atgagtggcg ataaaatcaa
     6361 tgtgataaat tgggattatt acgcatcagg
//
LOCUS       DAJVSY010000198         6337 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.200, whole genome shotgun sequence.
ACCESSION   DAJVSY010000198 DAJVSY010000000
VERSION     DAJVSY010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6337
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.200"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            30..152
                     /locus_tag="OQQ19_003782"
     CDS             30..152
                     /locus_tag="OQQ19_003782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001124879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HCS1805234.1"
                     /translation="MPKKMRTTRNLLLMATLLGSALFARAADKEMTIGAIYLDT"
     gene            168..1013
                     /locus_tag="OQQ19_003783"
     CDS             168..1013
                     /locus_tag="OQQ19_003783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001248814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HCS1805235.1"
                     /translation="MRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDA
                     IILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLSN
                     AAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDK
                     AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE
                     NNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATH
                     VDGLP"
     gene            1036..2547
                     /locus_tag="OQQ19_003784"
     CDS             1036..2547
                     /locus_tag="OQQ19_003784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HCS1805236.1"
                     /translation="MFTATEAVPVAKVVAGNKRYPGVVALDNVNFTLNKGEVRALLGK
                     NGAGKSTLIRMLTGSERPDSGDIWIGETRLEGDEATLTRRAAELGVRAVYQELSLVEG
                     LTVAENLCLGQWPRRNGMIDYLQMAQDAQRCLQALGVDVSPEQLVSTLSPAQKQLVEI
                     ARVMKGEPRVVILDEPTSSLASAEVELVISAVKKMSALGVAVIYVSHRMEEIRRIASC
                     ATVMRDGQVAGDVMLENTSTHHIVSLMLGRDHVDIAPVAPQEIVDQAVLEVRALRHKP
                     KLEDISFTLRRGEVLGIAGLLGAGRSELLKAIVGLETYEQGEIVINGEKITRPDYGDM
                     LKRGIGYTPENRKEAGIIPWLGVDENTVLTNRQKISANGVLQWSTIRRLTEEVMQRMT
                     VKAASSETPIGTLSGGNQQKVVIGRWVYAASQILLLDEPTRGVDIEAKQQIYRIVREL
                     AAEGKSVVFISSEVEELPLVCDRILLLQHGTFSQEFHSPVNVDELMSAILSVH"
     gene            2572..3570
                     /locus_tag="OQQ19_003785"
     CDS             2572..3570
                     /locus_tag="OQQ19_003785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1805237.1"
                     /translation="MSASSLSLPLGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNA
                     PGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEV
                     PLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPID
                     ENEVLDWLGGQFLGVPVSALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGIN
                     VRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRG
                     SLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLANILLTQRSSKAKR"
     gene            3603..4697
                     /locus_tag="OQQ19_003786"
     CDS             3603..4697
                     /locus_tag="OQQ19_003786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HCS1805238.1"
                     /translation="MKINRIVNEGFMKTMLAAYLPGNSTVDLREVAVPTPGINQVLIK
                     MKSSGICGSDVHYIYHQHRATAAAPDKPLYQGFINGHEPCGQIVAMGQGCRHFKEGDR
                     VLVYHISGCGFCPNCRRGFPISCTGKGKAAYGWQRDGGHAEYLLAEEKDLILLPDALS
                     YEDGAFISCGVGTAYEGILRGEVSGSDNMLVAGLGPVGMMAMMLAKGRGAKRIIGVDM
                     LPERLAMAKQLGVMDHGYLATTEGLPQIIAELTHGGADVALDCSGNAAGRLLALRSTA
                     DWGRVVYIGETGKVEFEVSADLMHHQRRIIGSWVTSLFHMEKCAHDLTDWKLWPRNAI
                     THRFSLEQAGDAYALMASGKCGKVVINFPD"
     gene            4709..5581
                     /locus_tag="OQQ19_003787"
     CDS             4709..5581
                     /locus_tag="OQQ19_003787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase"
                     /protein_id="HCS1805239.1"
                     /translation="MTIYTLSHGPLKLDVSDQGGVIEGFWRDTTPLLRPGKKSGVATD
                     ASCFPLVPFANRVSGNRFVWQGREYQLQPNVEWDAHYLHGDGWLGEWQCVSHSDDSLC
                     LVYEHRRGVYHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGTGWHPYFPLSPQTRIQ
                     AQASGYWLEREQWLAGEFCEQLPQELDFNQLAPLPRQWVNNGFAGWNGQARIEQPQEG
                     YAIIMETTPPAPCYFIFVSDPAFDKGYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPG
                     ESTTSEMSLRVEWL"
     gene            complement(5629..6051)
                     /locus_tag="OQQ19_003788"
     CDS             complement(5629..6051)
                     /locus_tag="OQQ19_003788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HCS1805240.1"
                     /translation="MNTLRYFDFGAARPVLLLIARIAVVLIFIILGFPKMMGFDGTVQ
                     YMASLGAPMPMLAAIIAVVMEVPAAILIVLGFFTRPLAVLFIFYTLGTAVIGHHYWDM
                     TGDAVGPNMINFWKNVSIAGAFLLLAITGPGAISLDRR"
     gene            complement(6148..>6337)
                     /locus_tag="OQQ19_003789"
     CDS             complement(6148..>6337)
                     /locus_tag="OQQ19_003789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phenoxybenzoate dioxygenase"
                     /protein_id="HCS1805241.1"
                     /translation="WLCRGNPETQKAIWFNLQNGVLIGAVTLNQGREIRPIRKWIQSG
                     KTFDAKLLIDENIALKSL"
BASE COUNT         1469 a         1515 c         1834 g         1519 t
ORIGIN      
        1 ttgttaataa aaaccctaca ggaggcacta tgcctaaaaa aatgagaaca acccgtaatc
       61 tattattaat ggctacgcta ttaggtagcg cactatttgc cagggctgcg gataaagaaa
      121 tgaccattgg tgcaatatac cttgatacct agggatatta cgctggagtg cgtcagggcg
      181 ttcaggatgc ggcaaaagat tcttcagtac aggtacagtt aattgaaact aacgcccagg
      241 gtgatatttc gaaagaaagt acctttgttg ataccctcgt ggcgcgtaat gtcgatgcca
      301 ttattttatc ggcagtgtct gaaaatggca gtagccgtac cgttcgtcgc gccagtgaag
      361 cgggtattcc ggtgatttgc tacaacacct gtattaatca aaagggtgtc gataaatatg
      421 tctcggcgta tctggtcggc gatccactgg aatttggtaa aaaactgagt aacgctgccg
      481 ccgattattt tattgccaat aaaattgacc agccgaaaat tgccgtcatc aattgcgaag
      541 cctttgaagt ttgtgtgcag cgacgtaaag gatttgaaga agtattaaaa tcccgcgttc
      601 ccggcgcgca aattgtcgct aatcaggaag ggactgtttt agataaagcg atttccgttg
      661 gtgaaaaact gattatctcc acgccggatc tcaacgccat tatgggggag tcgggcggtg
      721 cgacactcgg cgcggtaaaa gcggtacgta atcaaaatca ggccggaaaa attgctgttt
      781 tcggttcgga tatgacaacc gaaattgctc aggagctgga aaacaatcag gtgctgaaag
      841 cggtagtgga tatttccggt aagaaaatgg gcaatgctgt tttcgcgcaa acattgaagg
      901 ttatcaataa acaagccgac ggtgaaaaag tgattcaggt gccaatcgat ctctatacca
      961 aaacggaaga tggtaaacag tggctggcaa cgcacgttga tggtctgccc taatcgctga
     1021 ttcgcagagg tccctatgtt cacggcaaca gaggcagtcc cggtagcaaa agtggtggca
     1081 ggaaataagc gttaccccgg cgtcgttgcg ctggataacg ttaacttcac gctcaataaa
     1141 ggcgaagttc gtgcgctgtt aggtaaaaac ggcgcgggca aatcgactct cattcgaatg
     1201 cttaccggca gcgaacgccc ggatagcggt gatatctgga ttggcgagac gcgactggaa
     1261 ggtgacgaag ctacgttgac tcgccgtgcc gctgaactgg gggttcgtgc ggtttatcag
     1321 gaattaagtc tggtggaagg gctgacggtg gcagaaaacc tctgccttgg tcaatggcct
     1381 cgccgcaacg gcatgattga ttacctgcaa atggcgcagg atgcccaacg ttgcttacag
     1441 gcgctgggcg ttgacgttag tcctgaacaa cttgtttcaa cgctaagccc ggcgcaaaag
     1501 caactggtgg aaattgcacg ggtgatgaag ggcgagccgc gcgtggtcat tcttgatgaa
     1561 cccaccagct cgcttgccag tgcagaagtt gaactggtga tcagtgcggt gaaaaagatg
     1621 tcggcactgg gcgtggcggt gatttatgtc agccaccgga tggaagaaat ccgccgcatt
     1681 gcctcctgtg ccaccgttat gcgcgatggt caggtggcgg gcgatgtgat gctcgaaaac
     1741 acctccacgc atcatattgt gtcgctaatg ctagggcgtg atcacgttga tattgcgccg
     1801 gttgcccctc aggaaattgt ggatcaggcc gtactggaag tccgtgcgtt acgccataag
     1861 cccaagctgg aggatatcag ctttacgtta cgtcgcggcg aagtgcttgg cattgctggc
     1921 ctgctggggg cagggcgcag tgaattgctg aaggcgattg ttgggctgga gacgtatgaa
     1981 cagggcgaaa ttgttatcaa cggcgagaaa atcacgcgcc ccgattacgg cgacatgctg
     2041 aaacgcggca ttggctatac gccagaaaac cgcaaagaag cggggatcat tccctggttg
     2101 ggcgttgacg aaaatacagt gctgaccaat cggcaaaaaa tcagcgccaa cggagtgctg
     2161 caatggtcca ccatccgccg cctgaccgaa gaggtgatgc agcggatgac ggtcaaggcc
     2221 gccagtagcg aaacgcccat cggcacgctt tctggtggca atcagcaaaa agtggtgatc
     2281 ggtcgttggg tctatgccgc cagccagatt ttgttgctcg acgagccaac gcgcggcgtc
     2341 gatatcgaag ccaaacagca gatttaccgt attgtccgtg agctggctgc cgaaggaaaa
     2401 agcgtggtgt ttatctccag tgaagtggag gagttgccgc tggtgtgcga ccgcatcctg
     2461 ttgttacagc acggtacgtt ctcgcaggag tttcactcgc cggtcaatgt ggatgagctg
     2521 atgtccgcca ttctgtctgt gcactgatga attttaccga ggaacctgaa gatgtctgct
     2581 tcgtcattat cattgccgct gggcaagagc gtctcgctca aacaatttgt cagtcgccat
     2641 attaatgaga tcggtttgct ggtggtaatc gccattcttt atctggtctt ctccctgaat
     2701 gcgcctggct ttatctcatt gaataaccag atgaacgtgc ttcgcgatgc tgccaccatc
     2761 gggatcgccg cctgggcaat gacgctgatt attatctccg gtgaaattga tgtcagcgtt
     2821 ggaccgatgg tggcttttgt ctcggtgtgc ctggcatttt tgctgcaatt tgaagttccg
     2881 ttggcgattg cttgtctgct ggtgttgctg ttaggcgcgc tgatgggaac gctcgccggg
     2941 gtgctgcgcg gcgtgtttaa cgtgcccagt ttcgttgcca cactggggct gtggagcgcc
     3001 ctgcgcggaa tggggctgtt tatgaccaac gcactgccag tgccgattga cgaaaacgag
     3061 gtgctggact ggctgggcgg acaatttctc ggtgtgccag tatccgcgct gatcatgatg
     3121 gtgttgtttg cgctgtttgt gttcattagc cgaaaaaccg ccttcgggcg ctcggttttt
     3181 gccgttggcg gtaatgccac ggcggcgcag ttgtgcggta ttaacgttcg tcgagtgcgc
     3241 attcttatct ttaccctttc gggattatta gcggcggtga ccggcatttt gctggcggca
     3301 cgcctcggtt ccggtaacgc aggtgccgca aacggtctgg agtttgacgt catcgccgcg
     3361 gtcgtggtcg gcggtacggc actttccggc ggtcgcggtt ccctgttcgg tacattgctt
     3421 ggtgtgctgg tgattacgct aatcggtaac ggtctggtgc tgctcggtat taactccttt
     3481 ttccagcagg tggtacgcgg cgtcatcatc gtggtggcgg tgctggcgaa tatcttgctg
     3541 acccagcgaa gcagtaaagc gaaacgctaa accttaacgc ccctggcgcg ggtgcggcag
     3601 ggatgaaaat taatcgtatt gttaatgagg gatttatgaa aacgatgctg gcagcttatt
     3661 taccaggaaa ttcaaccgtc gatctgcggg aagttgcggt gccgacgccg gggattaacc
     3721 aggtactgat caaaatgaaa tcctccggga tttgcggaag cgatgtccac tatatctatc
     3781 atcaacaccg tgccacggcg gcggcacccg ataaaccgtt ataccaggga tttatcaacg
     3841 gtcatgaacc atgcgggcag attgtggcga tggggcaagg ctgtcgccat tttaaagagg
     3901 gtgatcgcgt gctggtgtat cacatttctg gctgtggttt ttgcccgaac tgccgccgcg
     3961 gctttcctat ctcttgtact ggcaaaggaa aagcggctta cggctggcag cgtgacggcg
     4021 gtcatgccga atacttgctg gcggaagaaa aagatctgat cctcctgccg gatgcgctta
     4081 gctacgaaga tggtgcgttt atcagttgcg gcgttggtac agcgtatgaa ggaattttgc
     4141 gcggcgaagt ttccggcagt gataacatgc tggtggccgg tctggggcca gtcggcatga
     4201 tggcgatgat gctggcgaaa ggtcgcggtg caaaacggat catcggcgtt gatatgctgc
     4261 cggaacgtct ggcgatggca aaacagttag gggtgatgga tcacggctat ttagcaacca
     4321 ccgaaggtct gccgcagatt atcgccgaac tcacccacgg tggcgcggat gttgcgctcg
     4381 attgttctgg taatgccgca ggtcgcttgc tggcactgcg atccaccgct gattggggac
     4441 gggtggttta catcggagaa accggaaaag tggagttcga ggtcagcgcc gatctgatgc
     4501 accatcaacg gcggattatc ggctcctggg tgaccagtct gttccatatg gaaaaatgcg
     4561 cccatgatct gacggactgg aaactgtggc cgcgtaacgc cattacccat cgcttctcgc
     4621 tggaacaggc tggagatgcc tatgcgctga tggcgagcgg caaatgcggg aaagttgtga
     4681 ttaacttccc ggattaagga gttagcggat gaccatctat accttatctc acggaccgct
     4741 aaagctggat gtctctgacc agggcggcgt aatcgaaggc ttctggcgtg acacgacgcc
     4801 gcttttacgt cctggtaaaa aaagcggtgt ggcaaccgat gcttcctgtt ttccgctggt
     4861 gccgtttgca aaccgggtga gcggcaatcg ttttgtctgg caggggcgtg agtatcaact
     4921 gcaaccgaat gttgagtggg atgcgcacta tctacacggc gatggctggc tgggcgagtg
     4981 gcaatgtgtc tcgcacagcg atgatagctt gtgtctggtg tatgaacatc gcagaggtgt
     5041 ctatcactat cgggtaagtc aggcgtttca tttaacggcg gatacgctga cggtgacgct
     5101 ctctgtcacc aatcaagggg cagagacgct gccatttggt accggctggc atccttattt
     5161 tccgttgtca ccacaaacgc ggattcaggc gcaggcgagc ggttactggc tggagcggga
     5221 gcagtggctg gcgggtgagt tttgcgagca gctaccgcag gaactggatt ttaaccagct
     5281 cgcgccgttg ccgcgccagt gggtgaacaa tggttttgcc ggatggaatg gtcaggcccg
     5341 catcgagcag ccgcaggaag gttatgccat catcatggaa acgacgccac ctgcaccgtg
     5401 ttatttcatc tttgtttccg accctgcgtt tgataaagga tatgcgtttg atttcttctg
     5461 tctggaaccg atgagccatg cgccggatga tcatcatcgc ccggaagggg gtgatctcat
     5521 tgcgctagca ccaggggaat caacaacttc agagatgtcg ttgcgggtag agtggctgta
     5581 atttattaaa tgccggataa ggcgttcacg ccgcatccgg catctttcct aacgccgatc
     5641 gagagaaatt gcccccggcc cggtaattgc caatagcaag aacgcgccag cgatactgac
     5701 attcttccag aaattaatca tatttggccc aaccgcatcg ccggtcatat cccagtaatg
     5761 gtgaccaatc accgccgtac ccagcgtgta gaaaataaac agcaccgcca gcggacgggt
     5821 gaaaaagcca agcacgatta atatcgcggc gggcacttcc ataactaccg caataatcgc
     5881 tgccagcatc ggcattggcg cgcccaacga ggccatatat tggaccgtac cgtcaaagcc
     5941 catcattttg ggaaaaccca aaataatgaa aattaagacc acggcgatac gggcaattaa
     6001 taacaaaacg gggcgggcag ctccaaaatc aaaataacgt agtgtgttca taaccaatcc
     6061 ctttgcaaga taatgtgatt taaacgtaat acacactctt gcacctcgcc acgccccagg
     6121 cgttgagata ttcgctaatt atcctggtta cagtgattta agcgcgatgt tctcatctat
     6181 cagcagtttc gcatcaaacg ttttgccgct ctggatccat ttgcgaattg ggcgaatctc
     6241 acgcccctga ttcagcgtga ccgcaccgat aagcacgccg ttttgcagat taaaccaaat
     6301 cgccttctga gtttccgggt tgccacgaca aagccag
//
LOCUS       DAJVSY010000199         6329 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.201, whole genome shotgun sequence.
ACCESSION   DAJVSY010000199 DAJVSY010000000
VERSION     DAJVSY010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6329
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.201"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            25..150
                     /locus_tag="OQQ19_003790"
     CDS             25..150
                     /locus_tag="OQQ19_003790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001397278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCS1805242.1"
                     /translation="MIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL"
     gene            239..1699
                     /locus_tag="OQQ19_003791"
     CDS             239..1699
                     /locus_tag="OQQ19_003791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol dehydrogenase family protein"
                     /protein_id="HCS1805243.1"
                     /translation="MGNNLLSAKATLPVYDRNNLAPRIVHLGFGAFHRAHQGVYADIL
                     ATEHFSDWGYYKVNLIGGEQQIADLQQQDNLYTVAEMSADAWTARVVGVVKKALHVQM
                     DGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLDHPMVAADVQNPHQPKTATG
                     VIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAKAVDVKLAQWIEDNVTFP
                     STMVDRIVPAVTEDTLAKIEQLTGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAE
                     LVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRYAAYGLMLQEQAP
                     TLKVQGVDLQDYANRLIERYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKF
                     DLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGKARVQSLLAIKAIF
                     GDDLPDNSLFTAKVTEAYLSLLAHGAKATVAKYSVK"
     gene            complement(1735..1938)
                     /gene="ydfZ"
                     /locus_tag="OQQ19_003792"
     CDS             complement(1735..1938)
                     /gene="ydfZ"
                     /locus_tag="OQQ19_003792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative selenium delivery protein YdfZ"
                     /protein_id="HCS1805244.1"
                     /translation="MTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRG
                     KTVVVEGCEEKLAPLDLIRLGMN"
     gene            complement(1935..2801)
                     /locus_tag="OQQ19_003793"
     CDS             complement(1935..2801)
                     /locus_tag="OQQ19_003793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005005969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1805245.1"
                     /translation="MTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVR
                     FNVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAA
                     SMITESQCYQLEQNLHQQRIAIEHKQLDDFFELDDNFHQLLTQIADCQLAWDTIENLK
                     ATVDRVRYMSFDHVSPPEMLLRQHLDIFSALQKRDGDAVERAMTQHLQEISESVARSA
                     RKTATGLAKSNSFTLIPSGMRGFSPRLTAHACIKKDVSLIKNKKYFTRQEYLYCARYV
                     GFDCKSERRKHL"
     gene            complement(2890..3636)
                     /gene="ydfG"
                     /locus_tag="OQQ19_003794"
     CDS             complement(2890..3636)
                     /gene="ydfG"
                     /locus_tag="OQQ19_003794"
                     /EC_number="1.1.1.298"
                     /EC_number="1.1.1.381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional NADP-dependent 3-hydroxy acid
                     dehydrogenase/3-hydroxypropionate dehydrogenase YdfG"
                     /protein_id="HCS1805246.1"
                     /translation="MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL
                     GDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETM
                     IDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLN
                     LRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWW
                     VSTLPAHVNINTLEMMPVTQSYAGLNVHRQ"
     gene            3773..5818
                     /gene="dcp"
                     /locus_tag="OQQ19_003795"
     CDS             3773..5818
                     /gene="dcp"
                     /locus_tag="OQQ19_003795"
                     /EC_number="3.4.15.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707439.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-dipeptidase Dcp"
                     /protein_id="HCS1805247.1"
                     /translation="MTTMNPFLVQSTLPYLAPHFDQIANHHYRPAFDEGMQQKRAEIA
                     AIALNPQTPDFNNTILALEQSGELLTRVTSVFFAMTAAHTNDELQRLDEQFSAELAEL
                     ANDIYLNGELFARVDAVWQRRESLGLDSESIRLVEVIHQRFVLAGAKLAQADKAKLKV
                     LNTEAATLTSQFNQRLLAANKSGGLVVNDIAQLAGMSEQEIALAAEAAREKGLDNKWL
                     IPLLNTTQQPALAEMRDRATREKLFIAGWTRAEKNDANDTRAIIQRLVEIRAQQAKLL
                     GFPHYAAWKIADQMAKTPEAALNFMREIVPAARQRASDELASIQAVIDKQQGGFSAQP
                     WDWAFYAEQVRREKFDLDEAQLKPYFELNTVLNEGVFWTANQLFGIKFVERFDIPVYH
                     PDVRVWEIFDHNGVGLALFYGDFFARDSKSGGAWMGNFVEQSTLNETHPVIYNVCNYQ
                     KPAAGEPALLLWDDVITLFHEFGHTLHGLFARQRYATLSGTNTPRDFVEFPSQINEHW
                     ATHPQVFARYARHYQSGAAMPDELQQKMRNASLFNKGYEMSELLSAALLDMRWHCLEE
                     NEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLADD
                     GYQWFVEQGGLTRENGQRFREAILSRGNSEDLERLYRQWRGKAPQIMPMLQHRGLNI"
     gene            complement(5863..>6329)
                     /locus_tag="OQQ19_003796"
     CDS             complement(5863..>6329)
                     /locus_tag="OQQ19_003796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2-oxo-tetronate isomerase"
                     /protein_id="HCS1805248.1"
                     /translation="NLTSALSQRLIADQLRLTTAESCTGGKLASALCAAEDTPKFYGA
                     GFVTFTDQAKMKILSVSQQSLERYSAVSEKVAAEMATGAIERADADVSIAITGYGGLE
                     GGEDGTPAGTVWFAWHIKGQTYTAVMHFAGDCETVLALAVRFAHVQLLQLLL"
BASE COUNT         1583 a         1512 c         1628 g         1606 t
ORIGIN      
        1 gccattatga tcatggcata ttcagtgatt ggtttaatct ctgcgctgaa aatgccagag
       61 gtgaaagacc gtgatttaag tgcgctggaa gacgctgcgg aagatcaacc gcgtgttgta
      121 agagctgcgc aaccttccag aagtctgtaa accctcaatc ccttctctta ccggagaggg
      181 gatttttatt catataacaa aacatatagc ttgccatatt taaatttaag gaattgttat
      241 gggaaataat ttgttatcag caaaagcgac actccctgtt tatgatcgta ataacctggc
      301 cccaagaatt gttcatttag gctttggtgc atttcaccgt gcgcatcagg gcgtgtatgc
      361 cgatattctt gctacagaac atttcagtga ctggggatat tataaggtca acttaatcgg
      421 cggcgaacag caaattgccg atttacaaca gcaagataat ctttataccg ttgcggaaat
      481 gtcggccgat gcgtggacgg ctcgcgtcgt tggcgtcgtt aaaaaagcct tgcacgtaca
      541 gatggatggc ttagaaaccg tgttggctgc gatgtgtgaa ccgcaaatcg cgattgtctc
      601 tctgacaatc accgaaaaag ggtatttcca ctctccggcg accggacagt taatgctcga
      661 tcacccgatg gtcgctgccg acgtgcaaaa tccccaccag ccgaaaacag caacaggggt
      721 gattgttgag gcgctggccc gccgtaaagc ggcaggactt cccgcattta ccgtcatgtc
      781 atgtgacaac atgccagaaa acggtcatgt tatgcgtgac gttgtcactt catacgcgaa
      841 agctgttgat gtaaaactgg cacaatggat cgaagataac gtgactttcc catcaacaat
      901 ggtggaccgt attgtgcccg cagtgacaga ggatacgctg gcgaaaatcg aacaacttac
      961 cggtgtgcgc gatcctgcgg gcgttgcctg tgaacctttc cgccagtggg taatagaaga
     1021 taactttgtt gccggacgtc cagaatggga aaaagcggga gccgaactgg ttagtgatgt
     1081 gctgccttat gaagagatga agttgcgcat gctcaacggc agtcattcat tcctggcgta
     1141 tttgggttat cttgccggat atcagcacat taatgactgc atggaagatg aacattatcg
     1201 ttatgcggcg tatggcttga tgttgcagga acaagcgccg acgctgaaag tgcagggcgt
     1261 tgatttgcaa gattacgcta accgattaat tgaacgctat agcaatccgg cgttacgtca
     1321 tcgaacctgg cagattgcga tggatggtag ccagaaattg ccacagcgga tgttggattc
     1381 tgttcgctgg catctggcgc atgacagcaa gttcgatctg ctggcgctgg gcgtcgcggg
     1441 ttggatgcgt tatgtcggtg gtgttgatga acagggaaat ccgatagaaa tcagtgaccc
     1501 actgttacct gttattcaga aggctgtaca aagtagtgcc gaagggaaag cgcgcgtcca
     1561 gtcattgctg gcgattaagg caatctttgg tgatgatttg ccagacaata gcttgtttac
     1621 tgcaaaagtg acggaagcgt acttgtcttt attagcgcat ggcgcgaaag cgaccgtggc
     1681 gaaatattcc gtgaagtaaa aaaagcaatg ccgccatcgg cggcattcac acacttagtt
     1741 catgccgaga cgaatcaggt ccagaggtgc cagtttctct tcacaacctt caacaactac
     1801 ggtttttccg cggcggattt gctcagcggt cagaccttca gtatcaatcg acaggatctt
     1861 gccagtgtga ccggtgccgc taaccataac acggctgcca gtggtgattg cgttacggtt
     1921 acgatcgtag gtcgtcatag gtgttttctc ctttctgatt tacagtcgaa gcccacgtaa
     1981 cgggcgcaat ataaatactc ctgtcgagtg aaatattttt tgtttttgat caagctcaca
     2041 tcttttttga tgcatgcatg agccgtaagg cggggggaaa agcctctcat cccggatggg
     2101 atgagagtaa atgaattact cttcgctaaa ccagtcgctg ttttcctggc ggatctggcc
     2161 acggattcgc tgatttcctg caaatgttgc gtcattgcac gttctaccgc atcgccatca
     2221 cgtttttgca gggcagagaa aatatcaaga tgctggcgta acagcatttc tggtggagaa
     2281 acatggtcga aactcatata gcgcacgcga tcaacggtcg ctttcaggtt ctcaatggta
     2341 tcccacgcca gttgacagtc ggcaatctgc gtcaggagtt gatggaagtt gtcatcaagt
     2401 tcaaaaaaat catccagttg cttgtgctca atggcaatgc gttgctggtg aagattttgt
     2461 tccagttggt agcactggct ttcggtaatc atgctcgccg cccgacgcgc caccgcgcac
     2521 tcaatggcct gacggataaa actgccgttg cgcacctggg ccatggaaat tttgttgacg
     2581 tagctgccac gctgtggacg aatttgaatc aggccgtttt ccgccagttt aataaaggct
     2641 tcacgaaccg gctggcgtga cacattgaaa cgaacagaaa cttctttttc cgacaacggt
     2701 gtgcctggag caatcaggca atggacaatg tcgcgacgaa ggatacgata aatttgctga
     2761 ttgacaggct gtgtgggatt aagttgcgtt tcgacggtca ttcgttcttg cttgtgagtg
     2821 agttaactgc atgagtctac cacttttttg tgacaagcaa taacccggca gttacgccgg
     2881 gtataaaaat tactgacggt ggacattcag tccggcatag ctttgggtaa ccggcatcat
     2941 ttccagggta ttgatattga cgtgagcagg cagcgttgac acccaccaaa cggcttcgct
     3001 gacatcttct ggcgtcaatg caacggtatt ttgataggtt ttttccgctt taccgtcatc
     3061 gcctttaaag cggacattgg aaaactcggt gccacccacc agacccggtt cgatgtcggt
     3121 gacgcgcacc gccgtaccat gcaggtccgt acgcagattc aggctaaact gacgaacaaa
     3181 cgctttcgtc gcaccgtaaa cgttaccacc ggcataaggc cagctacctg ccgttgagcc
     3241 aatgttaata atatgaccat gattacgttc aaccataccc ggtaagacgg cgcgcgtcat
     3301 atataccagg cctttgttgt tggtatcaat catcgtttcc cagtcttcaa cgctggcttt
     3361 atgcgcaggc tccatgccca acgccaggcc ggcattattt accaggatat caatattgca
     3421 ccactcggca ggaagcgatg ccagcatctc ttcaatagcg gcgcggttgc gaacgtccag
     3481 ttgggcgatg tacagattat ctcccagttc gtcttttaac tcctgcaacc gttcctggcg
     3541 acggccagtg gcgataactt tatgcccttg ttgaataaaa cgacgagtaa tgcattcacc
     3601 aaaacctgcc gttgctccag ttactaaaac gatcatctca ctgttcctca acgcttttgt
     3661 gtgtcaataa catagcacgt gatgcttaag agcgggtaat actggtttgt aagattgcac
     3721 tccgttatca gtaagcctac gctatggaac acctcgcgtt caggagaaga aaatgacaac
     3781 aatgaatcct ttccttgtgc aaagcacact accgtatctg gctccccatt ttgatcaaat
     3841 tgccaatcat cactatcgcc cggcattcga tgagggaatg cagcaaaagc gggcagaaat
     3901 tgctgccatc gcgcttaacc cgcaaacgcc tgatttcaac aatactattc tggcactgga
     3961 acaaagcgga gaattactta cccgcgttac cagcgtcttt tttgcgatga ctgcggcgca
     4021 taccaatgat gaattacagc gtcttgatga acagttttcc gctgaactgg cggaactggc
     4081 taatgatatc tatctgaacg gtgaattatt cgcgcgggta gatgctgtct ggcagcgccg
     4141 tgaatccctg gggcttgata gtgaatccat ccgcctggtg gaggtgattc atcaacgttt
     4201 tgtccttgcc ggagccaaac ttgcgcaagc tgataaagca aaattaaaag tactgaatac
     4261 agaagctgcg accctgacca gccagtttaa ccagcgatta ctggcagcaa ataaatccgg
     4321 cggtctggtt gtgaacgata tcgcgcagct ggcaggaatg agtgagcaag agattgcgct
     4381 ggcggcagag gcggctcgcg agaaaggtct ggataacaaa tggctgattc cgctgctgaa
     4441 taccacccaa caaccggcgc ttgccgagat gcgcgatcgt gcgacgcgtg aaaaactgtt
     4501 tattgcgggc tggacgcgag cggaaaaaaa tgatgccaat gatacccgcg ctatcattca
     4561 acgtctggta gagattcgcg cacagcaggc gaaactgctt ggttttcctc attatgccgc
     4621 atggaaaatc gccgatcaga tggcaaaaac gccagaagca gcactcaact ttatgcggga
     4681 aattgttcca gcggcgcgtc aacgtgctag cgatgaatta gcctccatac aggcggttat
     4741 cgataagcag caaggcgggt ttagcgcgca gccgtgggac tgggcatttt atgccgaaca
     4801 ggtacggcgg gagaaatttg atcttgatga ggcgcagctc aagccatatt ttgaattaaa
     4861 cacggtgttg aatgaaggtg tattctggac cgcgaatcag ctcttcggta ttaagtttgt
     4921 cgaacgtttt gatattcctg tctaccatcc tgacgttcgt gtgtgggaaa tttttgatca
     4981 taatggcgtg ggactggcgt tattttacgg tgatttcttc gcccgtgatt caaaaagcgg
     5041 cggtgcatgg atgggcaatt ttgttgagca atcaacgctt aatgaaacgc atccggtaat
     5101 ttataacgtt tgcaattatc agaaacccgc tgccggtgag cctgcgttgt tactctggga
     5161 tgatgtcata accttattcc atgaatttgg tcatacgctg cacggccttt ttgcccgcca
     5221 gcgttatgcc acgctttccg gcaccaacac gccgcgtgat tttgtcgaat ttccgtcgca
     5281 aatcaacgaa cactgggcaa cgcatccgca ggtattcgct cgctacgccc ggcattatca
     5341 gagcggggca gcaatgcctg acgaactgca acagaaaatg cgtaatgcca gcctgttcaa
     5401 caaagggtat gagatgagcg aactgcttag cgccgcactt ctcgatatgc gctggcattg
     5461 cctggaagaa aacgaagcaa tgcaggatgt cgatgatttt gaattgcggg cgctggtggc
     5521 ggaaaatatg gatcttcctg ctataccgcc acgctatcgc agcagttatt tcgcccatat
     5581 ttttggtggc ggatatgctg caggttatta cgcttatctg tggacgcaaa tgttggccga
     5641 tgatgggtac cagtggtttg ttgagcaggg cggattaacg cgtgaaaatg ggcagcgttt
     5701 tcgcgaggcg atcctttcca gaggtaacag cgaagatctg gaacgcctgt atcgacaatg
     5761 gcgcggtaag gctcctcaga ttatgccgat gctgcaacat cgtggcttga atatataaac
     5821 accaccaatg gctggcctgg agatatcgcc aggccagcct ggttatagca gtaattgcag
     5881 cagctggacg tgggcaaacc tcaccgctaa agctaatacc gtttcgcagt cgccagcaaa
     5941 atgcataacc gcagtgtagg tctggccttt aatatgccac gcgaaccaga cggtacccgc
     6001 tggcgtacca tcttcaccgc cctccagtcc gccgtagccg gtaatggcaa tactgacatc
     6061 agcatccgca cgctctatgg cacctgttgc catttctgct gccactttct cactcaccgc
     6121 agaatatcgt tcaagagatt gctggcttac gctgaggatt ttcatctttg cctgatcggt
     6181 gaaagtaaca aagcctgcac cgtaaaattt gggtgtatct tcagctgcac acagggcgct
     6241 agccaactta ccgccggtgc atgattcggc ggtagttaag cgtaattgat ccgcgataag
     6301 tctttgactc aacgcggatg tcaggtttt
//
LOCUS       DAJVSY010000200         6293 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.202, whole genome shotgun sequence.
ACCESSION   DAJVSY010000200 DAJVSY010000000
VERSION     DAJVSY010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6293)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6293)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6293
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.202"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(85..621)
                     /gene="ssb1"
                     /locus_tag="OQQ19_003797"
     CDS             complement(85..621)
                     /gene="ssb1"
                     /locus_tag="OQQ19_003797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein SSB1"
                     /protein_id="HCS1805249.1"
                     /translation="MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDK
                     ATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEV
                     VVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
                     PAAPSNEPPMDFDDDIPF"
     gene            875..3697
                     /gene="uvrA"
                     /locus_tag="OQQ19_003798"
     CDS             875..3697
                     /gene="uvrA"
                     /locus_tag="OQQ19_003798"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HCS1805250.1"
                     /translation="MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTIT
                     EIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKG
                     EHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLA
                     ESFETALELSGGTAVVADMDDPKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGA
                     CPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEA
                     PWGSLSANVHKVVLYGSGKENIEFKYMNDRGDTSIRRHPFEGVLHNMERRYKETESSA
                     VREELAKFISNRPCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAG
                     QRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGV
                     MYVLDEPSIGLHQRDNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGV
                     HGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLK
                     DVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHF
                     DKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRC
                     EACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEARE
                     FFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYIL
                     DEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGE
                     ILVSGTPETVAECEASHTARFLKPML"
     gene            complement(3732..4088)
                     /locus_tag="OQQ19_003799"
     CDS             complement(3732..4088)
                     /locus_tag="OQQ19_003799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HCS1805251.1"
                     /translation="MTISELLQYCMAKLGAEQSVHNDWKATQIKVEDVLFAMVKEVEN
                     RPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQ
                     AVNLLPEEKRKLLVQL"
     gene            complement(4092..4508)
                     /locus_tag="OQQ19_003800"
     CDS             complement(4092..4508)
                     /locus_tag="OQQ19_003800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbQ family protein"
                     /protein_id="HCS1805252.1"
                     /translation="MWYQKTLTLSAKSRGFHLVTDEILNQLADMPRVNIGLLHLLLQH
                     TSASLTLNENCDPTVRHDMERFFLRTVPDNGNYEHDYEGADDMPSHIKSSMQGTSLVL
                     PLHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQGE"
     gene            complement(4619..5332)
                     /gene="aphA"
                     /locus_tag="OQQ19_003801"
     CDS             complement(4619..5332)
                     /gene="aphA"
                     /locus_tag="OQQ19_003801"
                     /EC_number="3.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid phosphatase AphA"
                     /protein_id="HCS1805253.1"
                     /translation="MRKITQAISAVCLLFALNSSAVALASSPSPLNPGTNVARLAEQA
                     PIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFW
                     EKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPAT
                     NMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTY
                     KPLPQAGAFGEEVIVNSEY"
     gene            5734..5956
                     /locus_tag="OQQ19_003802"
                     /pseudo
     CDS             5734..5956
                     /locus_tag="OQQ19_003802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165333.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1594 a         1554 c         1568 g         1577 t
ORIGIN      
        1 cataacggag gcttcttttt tatggctggc agatgcttta atcatccacc ttaaaacaat
       61 ataacctatt gttttaatga caaatcagaa cggaatgtca tcatcaaagt ccatcggcgg
      121 ctcgttagac ggcgctgccg gagcggactg ctgcgggcga gactgcgcgc cgccgctgaa
      181 ctgattgcca ccctgcggct gctgaggctg accccaaccg ccctgcggct gaccaccacc
      241 gatattacca cctgccggag cgccaccacc ctgacgacca cccagcatct gcatggtgcc
      301 gccaacgttc accacgactt ctgtggtgta gcgatcctga ccggattgat cggtccattt
      361 acgggtacgc agctgacctt cgatataaac ctgagaacct ttacgcagat attcgctggc
      421 cacttctgcc agtttgccga acagcacaac gcggtgccat tcagtctgtt ctttcatctc
      481 gccggtcgct ttatcacgcc aggattcgga agtagccagc gtaatgttgg caactgcgcc
      541 accatttggc atgtagcgta cttccgggtc ctgacccaga ttaccaacga gaataacctt
      601 gtttacgcct ctgctggcca tgttcgtgtc tcctgaaaaa aatcgttctg aataagtgta
      661 aacgcgcgat tgtaccatta ccaatagcgc ttttactatg ttgtgacctc ggttccggga
      721 aacaaacctg gccagacatt gttacacaac actccggata atgcattcca atactgtata
      781 ttcattcagg tcaatttgtg tcataattaa ccgtttgtga tcgccggtag caccatgcca
      841 ccgggcaaaa aagcgtttaa tccgggaaag gtgaatggat aagatcgaag ttcggggcgc
      901 ccgcacccat aatctcaaaa acatcaacct cgttatcccc cgcgacaagc tcattgtcgt
      961 gaccgggctt tcgggttctg gcaaatcctc gctcgctttc gacaccttat atgccgaagg
     1021 gcagcgccgt tacgttgaat ccctttccgc ctacgcgcgg cagtttctgt cactgatgga
     1081 aaagccggac gtcgatcata ttgaggggct ttctcctgcc atctcaattg agcagaaatc
     1141 gacgtctcat aacccgcgtt ctacggtggg gacaatcacc gaaatccacg actatttgcg
     1201 tttgttgttc gcccgcgtcg gcgaaccgcg ctgtccggac cacgacgtcc cgctggcggc
     1261 gcaaaccgtc agccagatgg tggataacgt gctgtcgcag ccggaaggca agcgtctgat
     1321 gctactcgcg ccaatcatta aagaacgcaa aggcgaacac accaaaacgc tggagaacct
     1381 ggcaagccag ggttacatcc gtgctcgtat tgatggcgaa gtctgcgatc tttccgatcc
     1441 gccgaaactg gaactgcaaa agaaacacac tattgaagtg gtggttgatc gcttcaaggt
     1501 gcgtgacgat cttacccaac gtcttgcgga gtcgtttgaa accgcgctgg agctttccgg
     1561 tggtacagcg gtagtggcgg atatggacga cccgaaagcg gaagagctgc tgttctccgc
     1621 caacttcgcc tgcccaattt gcggctacag tatgcgtgaa ctggagccac gactgttttc
     1681 gtttaacaac ccggcaggtg cctgcccaac ctgtgacggc cttggcgtac agcaatattt
     1741 cgatcctgac cgcgtgatcc aaaaccccga gctgtcactg gctggcggtg cgatccgtgg
     1801 ctgggatcgc cgcaacttct attacttcca gatgctgaaa tcgctggcag atcactataa
     1861 gttcgacgtc gaagcgccgt ggggcagcct gagcgcgaac gtgcataaag tggtgttgta
     1921 cggttctggc aaagaaaaca ttgaattcaa atacatgaac gatcgtggcg atacctccat
     1981 ccgtcgtcat ccgttcgaag gcgtgctgca caatatggag cgccgttata aagagacaga
     2041 atccagtgcg gtacgtgaag aattagccaa gtttatcagc aatcgcccat gcgccagctg
     2101 cgaagggacg cgtctgcgtc gggaagcgcg ccacgtttat gtcgagaata cgccgctgcc
     2161 tgctatctcc gacatgagca tcggtcatgc gatggaattc ttcaacaatc tcaaactagc
     2221 tggtcagcgg gcgaagattg cagaaaaaat ccttaaagag atcggcgatc gtctgaaatt
     2281 cctcgttaac gtcggcctga attacctgac actttcccgc tcggcagaaa cactttccgg
     2341 cggtgaagcc cagcgtatcc gtctggcgag ccagattggt gcgggcctgg ttggcgttat
     2401 gtatgtactg gacgagccgt ctatcggcct gcaccagcgc gataacgagc gcctgttggg
     2461 tacgcttatc catctgcgcg atctcggtaa taccgtgatt gtggtggagc atgacgaaga
     2521 cgcaattcgc gccgctgacc atgtgatcga tatcggtcct ggtgcgggtg ttcacggcgg
     2581 tgaagtggtc gcagaaggtc cgctggaagc gatcatggcg gtgcctgaat cgttgaccgg
     2641 gcagtacatg agcggtaaac gcaagattga agtgccgaag aaacgcgttc cggcgaatcc
     2701 agaaaaagtg ctgaagctga caggtgcacg cggcaacaac ctgaaggacg tgacgctcac
     2761 gctgccagtc ggtctgttta cctgcatcac aggggtttca ggttccggta aatcgacgct
     2821 gattaacgac acactgttcc cgattgccca acgccagttg aatggtgcga ccatcgccga
     2881 accggcaccg tatcgcgata ttcaggggct ggagcatttc gataaagtga tcgatatcga
     2941 ccaaagccca attggtcgta ctccacgttc taacccggcg acctataccg gcgtgtttac
     3001 acctgtgcgc gaactgtttg cgggcgtacc ggaatcccgt gcgcgtggtt atacgccagg
     3061 acgtttcagc tttaacgtcc gtggcgggcg ctgcgaagcc tgtcagggcg acggtgtgat
     3121 caaagtggag atgcacttcc tgccggatat ctacgtgccg tgcgatcagt gcaaaggtaa
     3181 acgctataac cgtgaaacgc tggaaattaa gtacaaaggc aaaaccatcc acgaagtgct
     3241 ggatatgacc atcgaagagg cgcgtgagtt ctttgatgcg gtgccagctc tggcgcgtaa
     3301 gctgcaaacg ttgatggacg ttggtctgac gtacattcgc ctggggcagt ccgcaaccac
     3361 actttctggt ggtgaagccc agcgcgtgaa gctggcgcgt gagctgtcaa aacgcggcac
     3421 cgggcagacg ctgtatattc tcgacgagcc gaccaccggt ctgcacttcg ccgatattca
     3481 gcaactcctc gacgtgctgc ataaactgcg cgatcagggc aataccattg tggtgattga
     3541 gcacaatctc gacgtgatca aaaccgctga ctggattgtc gacctgggac cagaaggcgg
     3601 cagtggcggc ggcgaaatcc tcgtctccgg tacgccagaa accgtcgcgg agtgcgaagc
     3661 ttcgcatacg gcacgcttcc tcaagccgat gctgtaatcg ttaaggccgc tttctgagcg
     3721 gccttttcct ttcagagttg taccagcaat ttacgctttt cttccggtag taaattcact
     3781 gcctgctgat aagacgcatc caccagataa tagatttgcg aatccggcag cgaaccgtcg
     3841 agatacacgg tgctccagtg cgctttattc agatggcggc taggacgcac atcgctgtgc
     3901 tgctgacgta gcagctccgc cagctccggg ctggttttca gcgaaacagc tgggcgattt
     3961 tctacttctt tcaccatcgc aaacagtaca tcttccactt tgatctgcgt cgctttccag
     4021 tcgttatgca cgctctgttc tgcgcctagt tttgccatgc aatattgtag caactccgaa
     4081 atggtcattt tttactcccc ttgtagtgtc gcgatgatgc gacgcgatcc gccgtggatg
     4141 cgatgttccc ccagccagat gccttgccag gtgccggtct gaatacgccc tttatgtaac
     4201 ggcaatacaa gcgatgttcc ctgcattgag gatttgatat gagaaggcat atcgtctgct
     4261 ccctcatagt catgctcata atttccgttg tcgggaacgg tgcggaggaa aaaacgctcc
     4321 atgtcgtggc gtacggtggg atcgcagttc tcattaagtg tcagagaggc ggaggtatgt
     4381 tgcagcaaca gatgcagtaa gccgatgtta acgcgcggca tatcagccag ctgattcaga
     4441 atttcatccg ttaccagatg aaacccacga gatttggcgc taagcgtgag cgtcttttga
     4501 taccacatgt gctgctcctt gataaaactc tcttaatcag tttgcagcaa gacagcgaaa
     4561 ggataaaggt gtgattaaaa aaacagcatt cgggagagca tcacgctctc ccgctctgtc
     4621 agtattctga attgacgatc acctcttcac caaacgcacc cgcttgtggc aagggtttgt
     4681 aggtagagtt ggaggcgcgc agaatgcgga taccacgagc gccgacatcg cgtgcggcgg
     4741 taatatcatt atcagaatcg ccataaaaaa ttcggatatt tttatcctgc agccattgcg
     4801 attttgtatt ttgccctggt ttatcgcccg caaagatcac cggattcatg ttggtggcag
     4861 gaatatgaaa attatccgcc agcgtttttg aaaccgtttc tgttttcgtc ggactacgac
     4921 cagtcacaaa gaagatcgcg tcaccgcggc gtacatgcat atcaatcagc tggcgagcga
     4981 cctcttttgg aatgctgaat tcatcccagc cattgttcat tttttcccag aacacaggat
     5041 ttttcagata atcttcgctt tctggcgaga aggttttttt gccgcgccag aagcccgggc
     5101 tggaaaaaag taccgtgtca tcgatatcaa accccaccgc cattggcgga cgccctgcga
     5161 ggctattttc aatttgtgcg accgaaaccc aatgaattgg tgcctgttca gcaagcctgg
     5221 caacgttagt accagggtta agcggtgaag gagatgaggc cagggcaaca gcggaactgt
     5281 ttagagcgaa caataagcaa acggcactga ttgcctgtgt gatcttgcgc atatttttcc
     5341 ctaaatagtc agtatgttga aactttttat tgtgagattt gttgcaaaaa ccatctgacc
     5401 ataacgccag ctgcagggga aaggaaggat tatctgcggt ttttgtgatg aaaagcagga
     5461 tgattatatt taacccagta aatacgttcc tgtctttttt tgtataaaaa atgtttatta
     5521 ctcgatgtaa ggatacatta attttacgtt tattatgatg aatcctctgc aaatgagcga
     5581 aatttgatag aacatttatc tgctgtacga tttaatgaac ttaatgatac agcattacaa
     5641 aaacaatcga agtttataaa gatgattcct gattgaccag aaccctatcc tacaatggtg
     5701 attaatttta ttactcgcga tggagatgat gatatgaata tatcatatat gaatagcaac
     5761 aaaacgacat ctttacctgt tgagctagat gcactaaata ataaagatat ctcttatgcc
     5821 aaagattttt cttatgtcaa agatttcttt ttatacatag aaacacagtt aaaaattgca
     5881 aaagattttt gtagacttgg agaagaagta tcaagttcta ttgcaagtaa agtttttcac
     5941 gcatttattg atttagttaa caaaatcagg ggtaagaaag actttatgta tatttgcacg
     6001 ctttgctgtt ttgccgagga ggttaaaggt gattattctc attacaggac ctttttattt
     6061 gatattggta atcaatataa ggttaaactt acacaaagcg gaaaaaaaga gttctcttta
     6121 acattagaat ttaacgatac tataattgaa tctcagaaag tcacaggcaa taaggcaaag
     6181 catattcttg aggatataga aatattctat cgtaacaaac ccgatactta ttattaaatt
     6241 taataatggt tagatgtgca gaaattatta ctccacacga aaaaataggg aaa
//
LOCUS       DAJVSY010000201         6186 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.203, whole genome shotgun sequence.
ACCESSION   DAJVSY010000201 DAJVSY010000000
VERSION     DAJVSY010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6186)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6186)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6186
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.203"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            144..347
                     /locus_tag="OQQ19_003803"
     CDS             144..347
                     /locus_tag="OQQ19_003803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000051842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AaeX family protein"
                     /protein_id="HCS1805254.1"
                     /translation="MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRVLVPTGIYDFV
                     WHPALFNTALYCCLFYLISRLFV"
     gene            355..1287
                     /gene="aaeA"
                     /locus_tag="OQQ19_003804"
                     /pseudo
     CDS             355..1287
                     /gene="aaeA"
                     /locus_tag="OQQ19_003804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417708.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="p-hydroxybenzoic acid efflux pump subunit AaeA"
     gene            1293..3260
                     /gene="aaeB"
                     /locus_tag="OQQ19_003805"
     CDS             1293..3260
                     /gene="aaeB"
                     /locus_tag="OQQ19_003805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="p-hydroxybenzoic acid efflux pump subunit AaeB"
                     /protein_id="HCS1805255.1"
                     /translation="MGIFSIANQHIRFAVKLATAIVLALFVGFHFQLETPRWAVLTAA
                     IVAAGPAFAAGGEPYSGAIRYRGFLRIIGTFIGCIAGLVIIIAMIRAPLLMILVCCIW
                     AGFCTWISSLVRIENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSEIVIGIVCA
                     IIADLLFSPRSIKQEVDRELESLLVAQYQLMQLCIKHGDGEVVDKAWGDLVRRTTGLQ
                     GMRSNLNMESSRWARANRRLKAINTLSLTLITQSCETYLIQNTRPELITDTFREFFDT
                     PVETAQDVHKQLKRLRRVIAWTGERETPVTIYSWVAAATRYQLLKRGVISNTKINATE
                     EEILQGEPEVKVESAERHHAMVNFWRTTLSCILGTLFWLWTGWTSGSGAMVMIAVVTS
                     LAMRLPNPRMVAIDFIYGTLAALPLGLLYFLVIIPNTQQSMLLLCISLAVLGFFLGIE
                     VQQRLLGSMGALASTINIIVLDNPMTFHFSQFLDSALGQIVGCVLAFTVILLVRDKSR
                     DRTGRVLLNQFVSAAVSAMTTNVARRKENHLPALYQQLFLLMNKFPGDLPKFRLALTM
                     IIAHQRLRDAPIPVNEDLSAFHRQMRRTADHVISARSDDKRRRYFGQLLEELEIYQEK
                     LRIWQAPPQVTEPVHRLAGMLHKYQHALTDS"
     gene            3352..3624
                     /locus_tag="OQQ19_003806"
     CDS             3352..3624
                     /locus_tag="OQQ19_003806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="barstar family protein"
                     /protein_id="HCS1805256.1"
                     /translation="MNIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDVLMN
                     DVLPLPLEIEFVHLGEKTRRRFGALILLFDEAEEELEGHLRFNVRH"
     gene            complement(3680..3943)
                     /gene="yhcN"
                     /locus_tag="OQQ19_003807"
     CDS             complement(3680..3943)
                     /gene="yhcN"
                     /locus_tag="OQQ19_003807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417705.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide/acid stress response protein YhcN"
                     /protein_id="HCS1805257.1"
                     /translation="MKIKTTVAALSVLSVLSFGAFAADSIDAAQAQNREAIGTVSVSG
                     VASSPMDMREMLNKKAEEKGATAYQITEARSGDTWHATAELYK"
     gene            complement(4309..4779)
                     /gene="argR"
                     /locus_tag="OQQ19_003808"
     CDS             complement(4309..4779)
                     /gene="argR"
                     /locus_tag="OQQ19_003808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001257852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HCS1805258.1"
                     /translation="MRSSAKQEELVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQS
                     KVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHTSP
                     GAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFTVKDLYEAILELFDQEL"
     gene            5214..6152
                     /gene="mdh"
                     /locus_tag="OQQ19_003809"
     CDS             5214..6152
                     /gene="mdh"
                     /locus_tag="OQQ19_003809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000861594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HCS1805259.1"
                     /translation="MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAV
                     DLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV
                     QQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAE
                     LKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKA
                     GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVE
                     ERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK"
BASE COUNT         1512 a         1438 c         1599 g         1637 t
ORIGIN      
        1 tagataacag cataacagtt acgctaatat attaaatatc aatctacagc aatgttgctc
       61 tcgcccggct ttccatgccc ttctctgcgg cgacagatgc tgaaaataat aacgcctgct
      121 ctctctatac aaccaaggtc aacatgagtc tgtttcccgt tatcgtggtg tttgggctgt
      181 ccttcccacc gatatttttt gaattgcttt tatcactggc gattttctgg ctggtgcgcc
      241 gggtacttgt gccaacaggt atctacgact ttgtctggca tccggcgttg ttcaacaccg
      301 cgctctattg ctgcttgttt tatttgatat cgcgactgtt cgtttgaggt tgaagtgaaa
      361 acactaataa gaaaattctc ccgtacggcc atcacggtcg tattagtcat tctggccttc
      421 atcgcaattt ttaatgcctg ggtctattac accgaatccc cctggacgcg tgacgcgcgc
      481 tttagcgctg acgtcattgc gatcgcgccg gacgtttctg gactcattac ccaggtgaat
      541 gttcatgata accagctggt gaaaaaagga cagatactgt tcaccatcga ccagccgcgc
      601 tatcaaaagg cgcttgagga agcgcaagcc gatgttgctt attatcaggt actggcacag
      661 gagaaacgcc aggaggccgg acgtcgtaac cgtctcggtg tgcaggcgat gtctcgcgaa
      721 gagatcgact aggctaacaa cgtactacaa acggttctgc atcagttagc gaaagcgcag
      781 gcgacccgcg atctggcaaa actggatctt gaacgcacgg tgatccgcgc gccagcagat
      841 ggctgggtga ccaacctcaa cgtctatacc ggtgagttta ttactcgagg atcaacggcg
      901 gttgcgctgg tgaaacagaa ctccttctat gtactggcct atatggaaga aactaagctg
      961 gaaggggtgc gtccggggta tcgtgcagag atcacgccgc ttggcagtaa caaagtgctg
     1021 aaagggactg ttgatagtgt tgccgcaggg gtcaccaacg ccagcagcac gcgtgacgac
     1081 aaagggatgg cgactataga ctctaacctt gaatgggtgc gtcttgcgca acgtgttccg
     1141 gttcgtattc gtctcgacaa ccagcaagag aacatctggc ctgcgggcac cactgctaca
     1201 gtggtggtca ctggcaaaca agatcgcgac gaaagccagg attcgttctt ccgtaaaatg
     1261 gcccatcgcc tgcgtgagtt tggttaatca cgatgggtat tttctccatt gctaaccaac
     1321 atattcgctt tgcggtaaaa ctggcgaccg ccattgtact ggcgctgttt gttggctttc
     1381 acttccagct ggaaacgcca cgctgggcgg tactgacagc ggcgattgtt gccgccggtc
     1441 cggcctttgc tgcgggaggt gaaccgtatt ctggcgctat tcgttatcgt ggctttttgc
     1501 gcatcatcgg cacatttatt ggctgtattg ccggactggt gatcatcatt gcgatgatcc
     1561 gcgcaccatt attgatgatt ctggtgtgct gtatctgggc cggtttttgt acctggatat
     1621 cctcgctggt acgaatagaa aactcgtacg cgtgggggct ggccggttat accgcgctga
     1681 tcattgtgat caccattcag ccggaaccat tgcttacgcc gcagtttgcc gtcgaacgtt
     1741 gtagcgagat cgttatcggt attgtgtgtg cgattatagc ggatttgctc ttttctccgc
     1801 gatcgatcaa acaagaagtg gatcgagagc tggaaagttt gctggtcgcg caatatcaat
     1861 taatgcaact ctgtatcaag catggcgatg gtgaagttgt cgataaagcc tggggcgacc
     1921 tggtgcgacg caccacgggg ctacaaggca tgcgcagcaa cctgaatatg gaatcttccc
     1981 gctgggcgcg ggccaatcga cgtttaaaag cgatcaatac gctatcgctg acgctgatta
     2041 cccaatcctg cgaaacttat cttattcaga atacgcgccc ggaattgatc actgatactt
     2101 tccgcgaatt ttttgacacg ccggtagaaa ccgcgcagga cgtccacaag cagctcaaac
     2161 gcctgcggag agttatcgcc tggaccgggg aacgggaaac gcctgtcacc atttatagct
     2221 gggtcgcggc ggcaacgcgt tatcagcttc tcaagcgcgg cgttatcagt aacacaaaaa
     2281 tcaacgccac cgaagaagag atcctgcaag gcgaaccgga agtcaaagta gagtcagccg
     2341 aacgtcatca tgcgatggtt aacttctggc gaaccacact ttcctgcatt ctgggcacgc
     2401 ttttctggct gtggacgggc tggacttccg gcagtggtgc aatggtgatg attgcggtag
     2461 tgacgtcact ggcaatgcgt ttgccgaatc cacgcatggt ggcgatcgac tttatctacg
     2521 ggacgctggc cgcgctgccg ttagggctgc tctacttttt ggtgattatc cctaataccc
     2581 aacagagcat gttgctgctg tgtattagcc tggcagtgct gggatttttc ctcggtatag
     2641 aagtacagca acggctactg ggctcgatgg gggcgctggc cagcaccata aatattatcg
     2701 tgctggataa cccgatgact ttccatttca gtcagtttct cgacagcgca ttagggcaaa
     2761 tcgtcggctg tgtgctcgcg ttcaccgtta ttttgcttgt gcgggataaa tcgcgcgaca
     2821 ggaccggacg tgtactgctt aatcagtttg tttctgccgc tgtttccgcg atgactacca
     2881 atgtggcacg tcgtaaagag aaccacctcc cggcacttta tcagcagctg tttttgctga
     2941 tgaataagtt cccaggggat ttgccgaaat ttcgcctggc gctgacgatg attatcgcgc
     3001 accagcgcct gcgtgatgcg ccgatcccgg ttaacgagga tttatcggcg tttcaccgac
     3061 aaatgcgccg cacagcagac catgtgatat ctgcccgtag cgatgataaa cgtcgtcggt
     3121 actttggcca gttgctggaa gaacttgaaa tctaccagga aaagctacgc atctggcaag
     3181 cgccaccgca ggtgacggaa ccggttcatc ggctggcggg tatgctccat aagtatcaac
     3241 atgcgttgac cgatagttag gtcaaaacca acgccaaaag tgtcggtttt ttcatggcta
     3301 tacttagcga tgcacggcag aactcgccgc gaaacgtgac ggtggcaata gatgaatatt
     3361 tatacctttg attttgatga gattgagagt caggaggatt tttatcgtga ctttagccaa
     3421 acctttggtc tggcgaaaga taaggtacgc gatctcgact cactatggga tgtgttaatg
     3481 aacgatgtcc tgccgctacc acttgagatt gaatttgttc atctgggaga gaaaacgcgt
     3541 cgccgttttg gcgcgttaat attgctgttt gatgaggcag aggaagagct ggaagggcat
     3601 ttgcgtttta atgttcgtca ttagcgcaaa aaaaagcccc cgaaccgggg gcaatatcgt
     3661 cggacaagac gatgagggtt tatttgtaca gttcagccgt agcgtgccag gtgtcaccgc
     3721 tacgagcttc agtaatctgg taggccgttg cgcctttctc ttccgctttt ttgttcagca
     3781 tttcacgcat atccattggc gaagacgcca caccacttac ggatacggtc ccgattgctt
     3841 cacgattttg tgcttgtgca gcatcaatgg agtcggcagc gaatgcaccg aaagagagaa
     3901 cagaaagtac gcttaatgca gctacagtgg ttttgatttt catgattttt acctcgacat
     3961 aatcttttag ctgggccttt gttttgtgac ccatatcaca aaatcaagca tacactaatt
     4021 attgaactaa ttaataccac gctaactgtt tcagttgata ctaagtgtta aaaatgtgaa
     4081 ttttaataac aaaaaagaat taaaaacacg gtcatttatt tttaattcta gtattttcaa
     4141 ttagataatg aattttgcat aatgtgcttt ttttaccgta tgtattcatt atgtgaatga
     4201 catgtcgcag taaaactgca ctattcgtta aattaatcgc aggggaaagc agggggttga
     4261 gagggataag caacattttc cccgccgcca gaagcgacgg ggcagagatt aaagctcctg
     4321 gtcgaacagc tctaaaatcg cttcgtacag gtctttgacg gtgaaaccgt tagcaggggt
     4381 ggtaaagatg gtgtcatcgc cagcgatggt gcccagaata ccttctgctt tgcccagtga
     4441 gtccagcagg cgagcaatta actgcgccgc gccagggctg gtatgaatca cgacaactgc
     4501 atcgttgtag tcgatatcca gcaccagatt cttcaatgga ctggaggtgg ttggtacacc
     4561 cagttcagct ggcaggcagt aaaccatttc cattttggca ttgcgtgtac gtacagcacc
     4621 aaacttggtc aacatccgcg agactttaga ctgattaata ttgtcaaagc cttgctcctg
     4681 caacgcggcg acgatttcgc cctgggagct aaatttctct tctttaagta atgctttaaa
     4741 tgctttaact agttcttctt gcttagccga gcttcgcata agtcacccga tatggtggtt
     4801 gatacaacat tattgtgcat acagatgaat ttttatgcaa acagtcaacc ctgaagaagg
     4861 ctgaaataat gttatgaaag agcgggattt tatcaaattt cgttattgag aaacatgcct
     4921 gcgtcacggc atgcaaattc tgcttaaaag taaattaatt gttatcaaat tgatgttgtt
     4981 ttggctgaac ggtagggtat attgtcacca cctgttggaa tgttgcgcta atgcataagc
     5041 gactgttaat tacgtaagtt aggttcctga ttacggcaat taaatgcata aacgctaaac
     5101 ttgcgtgact acacattctt gatatgtggt cattgtaaac ggcaattttg tggattaagg
     5161 tcgcggcagc ggagcaacat atcttagttt atcaatataa taaggagttt aggatgaaag
     5221 tcgcagtcct cggcgctgct ggcggtattg gccaggcgct tgcactactg ttaaaaaccc
     5281 aactgccttc aggttcagaa ctctctctgt atgatatcgc tccagtgact cccggtgtgg
     5341 ctgtcgatct gagccatatc cctactgctg tgaaaatcaa aggtttttct ggtgaagatg
     5401 cgactccggc gctggaaggc gcagatgtcg ttcttatctc tgcaggtgta gcgcgtaaac
     5461 cgggtatgga tcgttccgac ctgtttaacg ttaacgccgg catcgtgaaa aacctggtac
     5521 agcaagttgc gaaaacctgc ccgaaagcgt gcattggtat tatcactaac ccggttaaca
     5581 ccacagttgc aattgctgct gaagtgctga aaaaagccgg tgtttatgac aaaaacaaac
     5641 tgttcggcgt taccacgctg gatatcattc gttccaacac ctttgttgcg gaactgaaag
     5701 gcaaacagcc aggcgaagtt gaagtgccgg ttattggcgg tcactctggt gttaccattc
     5761 tgccgctgct gtcacaggtt cctggcgtta gttttaccga gcaggaagtg gctgatctga
     5821 ccaaacgtat ccagaacgcg ggtactgagg tggttgaagc gaaagccggt ggcgggtctg
     5881 caaccctgtc tatgggccag gcagctgcac gttttggtct gtctctggtt cgtgcactgc
     5941 agggcgaaca aggcgttgtc gaatgtgcct acgttgaagg cgacggtcag tacgcccgtt
     6001 tcttctctca accgctgctg ctgggtaaaa acggcgtgga agagcgtaaa tctatcggta
     6061 ccctgagcgc atttgaacag aacgcgctgg aaggtatgct ggatacgctc aagaaagata
     6121 tcgccctggg cgaagagttc gttaataagt aattgattag cgaataataa aaaaccggag
     6181 cacaga
//
LOCUS       DAJVSY010000202         6054 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.204, whole genome shotgun sequence.
ACCESSION   DAJVSY010000202 DAJVSY010000000
VERSION     DAJVSY010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6054)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6054)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6054
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.204"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..2015
                     /locus_tag="OQQ19_003810"
     CDS             <1..2015
                     /locus_tag="OQQ19_003810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001215568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4132 domain-containing protein"
                     /protein_id="HCS1805260.1"
                     /translation="RGDYSALISEFKTFWHSYQREWQLYMLAALPIEKTAQAWNVLSK
                     EPHVGVEFVMTHLQLAGLQGFIHSFSRYPQEALPVAQYFAAIELAPLIARAFNKLKTL
                     RENARTWLLKYPEHAITGLLPSALDKAGEAQDNARAALRMLTENGHQPLLQEIARRYN
                     QPEVTDAVNALLALDPLDNHPTKIPTLPAFYQPSLWTRPVLKANAQSLPDSALLHLGE
                     MLRFPQEEALYPGLLQVKDACTADSLAEFVWDLFTAWLTAGAPSKESWAFTALGVLGN
                     DDTARKLTPLIRAWPGESQHKRATVGLDILAAIGSDIALMQLNGIAQKLKFKALQERA
                     KEKIADIAESRELTVAELEDRLAPDLGLDDNGSLLLDFGPRQFTVSFDETLKPFVRDA
                     SGSRLKDLPKPNKSDDESRSNDAVNRYKLLKKDARIVAAQQVARQESAMCLRRRWSPE
                     NFKLFLVEHPLVRHLTRRLIWGVYSAENQLQACFRVAEDNSYSTADDDLFTLPEGGIS
                     IGIPHVLEISPTDAAAFGQLFADYELLPPFRQLDRNSYALTGAERNASELTRWAGRKC
                     PSGRVMGLANKGWIKGTPQDGGWIGWMIKPLGRWSLVMEIDEGFAVGMSPAELSAEQL
                     LSKLWLWEGKAESYGWGSNSTQEAQFSVIDAITASELINDIEALFE"
     gene            2025..2267
                     /locus_tag="OQQ19_003811"
     CDS             2025..2267
                     /locus_tag="OQQ19_003811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005069643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /protein_id="HCS1805261.1"
                     /translation="MDKELPWLADNAQLELKYKKSKTPLSHRNWPGEPVSVITESIIQ
                     TLGDELLQKAEKKKRLSGVMKIFHWSGSPPSRRPST"
     gene            2264..5656
                     /locus_tag="OQQ19_003812"
     CDS             2264..5656
                     /locus_tag="OQQ19_003812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001440040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4132 domain-containing protein"
                     /protein_id="HCS1805262.1"
                     /translation="MIGEHKPSVPARTMAALACIAQNDSQQLLDEIVQQEGLEYATEV
                     VIARLFIARCYESDPLVVTLQYQDEDYGYGYRSETYNEFDLRLRKHLSLAEESCWQRC
                     ADKLIAALPGITKVRRPFIALILPEKPEIANELVGLECPRTHFHSKKWLKVVANDPTA
                     VRKLEHYWSQDIFSDREASYMSHENHFGYAACAALLREQGLAAIPRLAMYAHKEDCGS
                     LLVQINHPQVIRTLLLVADKNKPSLQRVAKYHKNFPHATLAALAELLALTEPPARPGY
                     PIIEDKKLPAQQKARDEYWRTLLQTLMASQPQLAEEVMQWLSTQARAVLNSYLSAPPK
                     PVIDSTDNSNLPEILVSLPWRSKKKMTAPRLDLAPLELTPQVYWQPGEQERLAATESA
                     RYFSTESLAQRMEQKSGRVVLQELGFGDDVWLFLNYILPGKLDAARNSLIVQWHYYQG
                     RVEEILNGWNSPEAQLAEQALRSGHIEALINIWENDNYSRYRPEKSVWNLYLLAQLPR
                     EMALTFWLRINEKKHLFAGEDYFLSILGLDALPGLLLAFSHRPKETFPLILNFGATEL
                     ALPVARVWRRFAAQRDLARQWILQWPEHTASALIPLVFTKPSDNSEAALLALRLLYEQ
                     GHGEFLQTVANRWQRTDVWSALEQLLKQGPMDIYPARIPKAPDFWHPAMWSRPRLITN
                     NQPVTGDALEIIGEMLRFTQGGRFYSGLEQLKTFCQPQTLAAFAWDLFTAWQQAGAPA
                     KDNWAFLALSLFGDESTARDLTTQILAWPQEGKSARAVSGLNILTLMNNDMALMQLHH
                     VSQRAKSRPLRENAAEFLQVVAEDRGLSQEELADRLVPTLGLDDPQALSFDFGPRQFT
                     VRFDENLNPVIFDQQNVRQKSVPRLRADDDQLKAPEALARLKGLKKDATQVSKNLLPR
                     LEAALRTTRRWSLADFHSLFVNHPFTRLVTQRLIWGVYPANEPRCLLKAFRVAAEGEF
                     CNAQDEPIDLPADALIGIAHPLEMTVEMRSEFAQLFADYEIMPPFRQLSRRTVLLTPD
                     ESTSNSLTRWEGKSATVGQLMGMRYKGWESGYEDAFVYDLGEYRLVLKFSPGFNHYNV
                     DSKALMSFRSLRVYRDNKSVTFAELDVFDLSEALSAPDVIFH"
     gene            5718..>6054
                     /locus_tag="OQQ19_003813"
     CDS             5718..>6054
                     /locus_tag="OQQ19_003813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805263.1"
                     /translation="MIVQKELVAIYDYEVPVPENPFSFRLEIHKCSELFTGSVYRLER
                     FRLHPTFHQRDREDVDPLINDALIYIRDEFIDERKLRGESPEPVPVIFNCELQNIFNQ
                     LIEYYFIKVG"
BASE COUNT         1553 a         1564 c         1532 g         1405 t
ORIGIN      
        1 agaggggaga ttattctgcg ctgatcagcg aatttaaaac cttctggcac tcctatcaac
       61 gggaatggca gctttacatg ttagccgccc tgcctatcga aaaaacagcg caggcgtgga
      121 atgtcctcag taaagagcca cacgtcggtg tcgagtttgt catgacgcac ctgcaactcg
      181 ctgggttaca gggttttatt cactcctttt cacgctatcc acaagaagct ctacctgtag
      241 cacaatattt tgcggctatc gaattagcgc cactgattgc ccgtgccttc aacaaactca
      301 aaacgctacg cgaaaacgcc cgcacctggc tgttgaaata cccggaacat gccattaccg
      361 gcctgctgcc ttcggcgctc gacaaagccg gtgaagcaca ggataacgcc cgcgctgcct
      421 tgcgtatgct taccgaaaat ggtcatcagc cattactgca agaaatcgcc cggcgttata
      481 accagccgga agtaaccgac gcggtgaacg ctctgcttgc gctcgatccc ttagataatc
      541 acccaacaaa aatccccact cttccggcct tttatcagcc atcgctctgg acgcgcccgg
      601 tattaaaagc aaacgcccaa tcactgccag atagtgccct cctccacctc ggcgaaatgc
      661 tccgcttccc tcaggaagag gctctgtatc cgggattatt gcaggtgaaa gatgcctgta
      721 ccgccgactc actggctgaa tttgtctggg atctgtttac cgcctggctg actgcgggcg
      781 cgccgtcgaa agagagttgg gcgtttactg cgttaggcgt tctcggtaac gatgataccg
      841 ctcgcaaact gacgccatta atccgcgcct ggcctggtga atcccagcat aaacgcgcca
      901 ccgttgggtt ggatattctc gccgctatcg gtagtgatat tgccctgatg cagcttaacg
      961 gcatcgccca gaaacttaaa ttcaaagcat tacaggagcg ggcaaaagaa aaaattgccg
     1021 acattgccga gagccgcgaa ctcacggtgg cggagcttga agatcggtta gcaccggatc
     1081 tcggtctgga tgataacggt tcgttgctgc tggatttcgg cccacgccag ttcaccgtca
     1141 gctttgatga aaccttaaaa ccgtttgtgc gtgacgcttc cggcagccgc ctgaaagacc
     1201 tgcccaaacc aaacaaaagc gatgatgaat cgcggtcgaa cgatgcggtt aaccgctaca
     1261 aattgctgaa aaaagatgcg cgtatcgtcg ccgcccagca ggtagcaagg caggaatccg
     1321 ccatgtgcct gcgtcgccgc tggtcgccag aaaactttaa gctcttcctg gttgagcatc
     1381 cgttggttcg ccacttaacc cgccgtctga tttggggcgt ttatagcgcc gaaaaccagc
     1441 tacaggcgtg ctttagggtg gcggaagata acagctacag caccgctgac gatgatcttt
     1501 tcaccctgcc ggaaggcggt atctctatcg gcattcctca cgttctggaa atatcaccga
     1561 cggatgctgc cgcctttggt cagctttttg ccgactacga actgctacca ccattccgtc
     1621 agcttgaccg taacagttac gccctgacag gagccgagcg caacgccagc gaactgaccc
     1681 gctgggcagg cagaaaatgc ccgagcggtc gggtcatggg gctggcgaat aaaggctgga
     1741 taaagggcac cccgcaggat ggaggctgga tcggctggat gatcaaaccc ctgggccgct
     1801 ggtcgttagt catggaaatc gatgaaggtt ttgcggtagg catgtcgcca gccgaactca
     1861 gcgctgagca gctcttaagc aagctgtggc tatgggaagg caaagcagaa agctatggct
     1921 gggggagtaa ttcaacacag gaagcgcagt tctccgtaat cgatgccatc accgccagcg
     1981 agctaattaa cgatattgaa gccctgtttg aataaggaaa gagcatggac aaggaattac
     2041 cgtggctggc ggataacgcc caactggaac tgaaatataa aaaaagcaaa acgccgctca
     2101 gtcatcgcaa ttggccgggc gaaccggtgt ctgttatcac tgaaagcatc attcagacac
     2161 tgggtgatga attgctacaa aaagctgaga agaaaaaaag attgtctggc gttatgaaaa
     2221 tttttcactg gagtggcagt ccgccatcac gcaggccatc aacttgatcg gcgaacacaa
     2281 accctcagtc ccggcccgga caatggcggc gctagcctgt atcgcgcaaa atgacagcca
     2341 acagttgctc gacgaaatcg tccaacaaga ggggctggaa tatgcgactg aggtggtaat
     2401 tgcacgcctg tttattgcgc ggtgttatga gagtgatcct ctggtagtga cattgcagta
     2461 tcaggacgag gattatggct atggttatcg ctcagaaacc tataacgaat tcgatctccg
     2521 actgcgtaag catctctctc tggcagagga aagctgctgg cagcgttgcg ccgacaaact
     2581 cattgccgca ctaccaggaa taaccaaagt tcgccgccct tttattgcgc tgatcctccc
     2641 ggaaaaacca gaaatagcca atgagttggt aggccttgaa tgcccgcgaa ctcattttca
     2701 ttctaagaag tggttaaaag ttgttgctaa tgaccccaca gcggtgagaa aactcgaaca
     2761 ctactggagc caggatatat ttagcgatcg agaagccagc tacatgtcgc atgaaaacca
     2821 cttcggctac gcggcctgcg ccgccctttt gcgcgaacaa ggactggcag ccattccgcg
     2881 cctcgcgatg tatgcccata aagaagattg cggcagtctg ctggtacaaa ttaaccatcc
     2941 gcaagtcatc cgcaccttgc tactggtggc tgataaaaac aaacccagcc tgcaacgtgt
     3001 agctaaatac cataaaaact tcccccatgc gacgctcgcc gcactggcag aactgctggc
     3061 gttaacagaa ccaccagccc gccctggtta tccaatcatc gaagacaaaa agctgcctgc
     3121 acagcaaaaa gcacgcgatg aatactggcg tacgctgtta caaacgctga tggcatcgca
     3181 gccacaactg gcagaagagg tgatgcagtg gttaagtact caagccaggg cagtgctgaa
     3241 tagttattta tcggcaccgc ccaaaccggt tattgatagt accgataaca gcaatctgcc
     3301 tgaaatcctc gtttcgctac cgtggcgtag taagaaaaaa atgacagctc cacgtcttga
     3361 tttggcaccg ctcgaattaa ctccgcaagt ttactggcaa ccaggcgaac aagagaggct
     3421 tgccgccact gagtctgccc gttatttcag cacggaatct cttgcgcaac gcatggaaca
     3481 aaaaagtgga cgagttgtat tacaggaact gggttttggg gatgatgtat ggctgtttct
     3541 gaattatata ctccccggaa aactggatgc tgcacgcaat tcactcattg ttcagtggca
     3601 ttactaccag gggcgggttg aagagatcct gaatggctgg aactccccgg aagcacaatt
     3661 agcagaacag gcgctccgca gcggtcacat agaagcgtta attaacatat gggaaaatga
     3721 caactactca cgttatcgtc cggaaaagag tgtctggaac ctgtatttat tggcacagtt
     3781 gccgcgtgag atggctttga ccttctggct gcgtatcaat gagaaaaagc atctgttcgc
     3841 gggtgaggac tattttctca gtatcctcgg attggatgcg ctaccaggtc tgctgttggc
     3901 tttttcacat cgtccaaaag aaacatttcc gttaatttta aattttggcg caacagaact
     3961 ggcgctgcct gttgcccgcg tctggcgacg tttcgcggcg cagcgtgatc tggctcgcca
     4021 gtggatttta caatggccgg aacatacggc tagtgcactt atccctcttg tctttaccaa
     4081 acccagcgat aatagcgaag ccgcattact tgccctgcgt ttactgtacg aacagggaca
     4141 tggcgaattt ctacaaaccg tggcaaaccg ctggcagcgt acagatgtat ggtctgccct
     4201 ggagcagttg cttaaacagg gtccaatgga catttacccg gcacgcattc caaaagcccc
     4261 tgatttctgg catccggcaa tgtggtccag gcctcgactt atcactaata atcagcctgt
     4321 taccggtgac gctctggaaa ttatcggcga aatgctgcgc tttacccagg ggggacgttt
     4381 ttatagcggg ctggaacaac tgaaaacgtt ctgccagcca caaacgctgg ccgcttttgc
     4441 ctgggatctc ttcactgcct ggcaacaagc gggggccccc gcaaaagaca actgggcatt
     4501 tctggcatta agtctctttg gtgacgaaag cacggcacgg gatctgacga cacagatcct
     4561 cgcctggcca caagaaggca aatctgcccg tgctgtcagt ggtctgaata tacttaccct
     4621 gatgaataat gatatggcgc tgatgcagct gcatcatgta tcacaacggg cgaaatcacg
     4681 ccccttacgt gaaaacgcag cggaatttct tcaggtggtc gcagaagatc gcgggctaag
     4741 ccaggaagag ttagcggaca gattagtccc aaccctgggc cttgatgatc cgcaggcgtt
     4801 gagttttgat tttggtcccc ggcagtttac cgttcgcttc gatgaaaacc tcaacccggt
     4861 tatctttgat cagcaaaacg ttcgccagaa aagcgttccc cggttgcgcg ccgatgacga
     4921 tcaactgaaa gcgcccgagg cactggcccg actaaaaggg ctaaaaaaag atgctactca
     4981 ggtgagcaaa aacctgctcc cgcgtcttga agctgcccta cgtaccaccc gacgctggtc
     5041 gctggcagat tttcattctc tgtttgttaa tcatcccttt acccgtctgg ttacccagcg
     5101 attaatatgg ggggtttatc cggcaaatga accgcgttgt ttactcaaag cctttcgtgt
     5161 ggccgcagag ggggagttct gcaatgcgca agatgagcca attgacctgc ctgcggacgc
     5221 tctgattggc attgcccacc cgttagaaat gacagtagaa atgcgcagtg aatttgcaca
     5281 gctttttgcc gattacgaaa ttatgccgcc ttttcgccag ttgtcgcgcc gcacggtgct
     5341 gctcacacct gacgagtcaa ccagtaacag cctgactcgc tgggaaggta aatccgctac
     5401 cgttgggcag cttatgggaa tgcgatacaa aggctgggag tcaggttatg aggacgcatt
     5461 tgtctatgac ctgggtgagt accggctggt ccttaagttt tcacccggtt ttaaccacta
     5521 caatgttgat agcaaagcgc taatgagctt ccgttctctt cgagtgtacc gtgacaataa
     5581 atccgtaact tttgccgaac ttgatgtgtt tgatttgagt gaggcgttaa gcgcacctga
     5641 cgtcattttc cattaaaaac acagcgggca gtgatgcaac tgcccgttat caacacgact
     5701 taccagcggg gaaagcgatg atcgtgcaaa aagagctggt tgctatttac gattatgagg
     5761 tccctgtacc tgaaaatccg ttttccttca gacttgagat ccataaatgc tctgaattat
     5821 ttacaggttc cgtctatcga ctggaacggt tccggctaca tccaacattt catcaacgtg
     5881 atcgagagga tgttgacccg ctaataaatg atgcgttgat ttatataaga gatgagttta
     5941 ttgatgagcg gaaattacga ggtgaatcac ctgaacctgt accagtaatt tttaattgtg
     6001 aactacagaa tatattcaac caactaatag aatattactt tattaaagtg ggaa
//
LOCUS       DAJVSY010000203         6051 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.205, whole genome shotgun sequence.
ACCESSION   DAJVSY010000203 DAJVSY010000000
VERSION     DAJVSY010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6051
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.205"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(95..2197)
                     /locus_tag="OQQ19_003814"
     CDS             complement(95..2197)
                     /locus_tag="OQQ19_003814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCS1805264.1"
                     /translation="MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTP
                     AAVSVVDGEEMRLATPRINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIR
                     GIRLYVDGIPATMPDGQGQTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQ
                     QPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQK
                     NLANAKLGVRIDEASKLSLIFNSVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTI
                     KQTQAGLRYERSLSAQDDMSVMMYAGERETTQYQSIPMAPQLNPSHAGGVITLQRHYQ
                     GIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGMPEYGQKGELRRDERN
                     LMWNIDPYLQTQWQLSEKLSLDAGVRYSSVWFDSNDHYVTPGNGDDSGDASYHKWLPA
                     GSLKYAMTDAWNIYLAAGRGFETPTINELSYRADGQSGMNFGLKPSTNDTIEIGSKTR
                     IGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAGDFRVNA
                     SWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMA
                     DDENTAKAPSYTLVGLFTGYKYNYHNLTVDLFGRVDNLFDKEYVGSVIVNESNGRYYE
                     PSPGRNYGVGMNIAWRFE"
     gene            2439..3500
                     /locus_tag="OQQ19_003815"
     CDS             2439..3500
                     /locus_tag="OQQ19_003815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HCS1805265.1"
                     /translation="MHLRHLFSSRLRGSLLLGSLLVASSFSTQAAEEMLRKAVGKGAY
                     EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQT
                     LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI
                     GKESVIWVVDGENIKLKTAIQNTGKMSTGLALDSKGKRLYTTNADGELITIDTADNKI
                     LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLA
                     VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ
                     KSTKQQEATQPDDVIRIAL"
     gene            complement(3613..5112)
                     /gene="ansP"
                     /locus_tag="OQQ19_003816"
     CDS             complement(3613..5112)
                     /gene="ansP"
                     /locus_tag="OQQ19_003816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310084.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparagine permease"
                     /protein_id="HCS1805266.1"
                     /translation="MSKHDTDTSDQHAAKRRWLNAHEEGYHKAMGNRQVQMIAIGGAI
                     GTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFL
                     GEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNM
                     IGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHG
                     LLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLV
                     MLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMA
                     MGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIAS
                     WAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYPNGTYT
                     IAALPIIGILLVIGWFGVRKRVAEIHSTAPVVEEDEEKQEIVFKPETAS"
     gene            5379..5996
                     /locus_tag="OQQ19_003817"
     CDS             5379..5996
                     /locus_tag="OQQ19_003817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HCS1805267.1"
                     /translation="MIKVYGVPGWGSTISELMLTLADIPYQFVDVSGFDHEGTSRELL
                     KTLNPLCQIPTLALENDEIMTETAAIALMVLDRRPDLAPPVGRAERQQFQRLLVWLVA
                     NVYPTFTFADYPERWAPDAPEQLKKNVIEYRKSLYIWLNSQLTAEPYAFGEQLTLVDC
                     YLCTMRTWGPGHEWFQDNATNISAIADAVCQLPKLQEVLKRNEII"
BASE COUNT         1610 a         1537 c         1444 g         1460 t
ORIGIN      
        1 gtcttgctga aattatgcaa caaaatattg ctattttata ccagcaatac aatcgttaaa
       61 gtaaatgccc ggcaaatacc gggcatcaag gtaattactc aaatctccac gcaatattca
      121 tgccgacacc ataatttcgt ccgggcgaag gttcgtaata tctcccgttt gactcattga
      181 caatgacaga accaacgtat tctttatcga ataaattatc gacacgacca aataaatcca
      241 cagttaaatt gtggtaattg tatttatacc cggtgaataa gccgacgaga gtataagacg
      301 gcgcttttgc cgtattttca tcatctgcca taatatcgcc catataacgc gcttccgtgc
      361 ctgcatacca accatcttcc ggtacataac ctatcgacgc aaagcccata ttacgggcga
      421 tccctggcat ccgattaccg ttacaatcct gttcattgca aacattgctg cgataggtcg
      481 catcaagcca ggtccaggac gcgtttacgc gaaaatctcc tgcgaaacgt tgatcccatg
      541 ccagttcagc gccttgacga cgggtctttc cggcattttt gtaagtcgta cgcccaccgc
      601 tactgctatc gacaacaatt tcatcatcag tgtcggtctg aaacaatgcg agactaagca
      661 gcccatcacc aatacgcgtt ttactgccga tctcaattgt atcgttggtg gatggtttta
      721 aaccaaagtt cataccgctt tgcccatcag cacgataaga cagctcatta atcgtcggcg
      781 tttcaaagcc tcgcccggct gccagataga tattccaggc atcggtcatt gcatatttta
      841 acgaaccggc aggtagccat ttatgataac tggcatcacc gctgtcatcg ccgttacccg
      901 gagtaacgta atggtcgttg gaatcaaacc acacggagct gtagcgcacg ccagcatcca
      961 gcgacagttt ttcgctcagc tgccactgcg tctgtaaata gggatcgatg ttccacatca
     1021 gattgcgttc gtcgcgacgc aactcacctt tttgcccgta ctccggcatg ccgctattca
     1081 ggcggaagtt attgtagccc ttgcggtttt cactcatgtt ttcgtagttc aggccggtag
     1141 tgaacgtgac cggaacgccc agttcaccac ggtgtgtcca gcggctgtct atcccctggt
     1201 aatggcgttg cagggtaatc acgccgcccg catgtgacgg gttaagttgt ggtgccatgg
     1261 gtattgactg gtactgggtc gtttctcgct ctccggcata catcatcaca ctcatatcat
     1321 cttgcgcgct caggctacgc tcatagcgca acccagcctg agtttgcttg atggtttttc
     1381 gcgtgtcgta ctgttctgca cgaggcgctt gttgtggatt agccttccat tctgctttgg
     1441 ttagcccacc tgggtcatct gctttgatat ccacactatt gaaaatcaga cttaatttgc
     1501 tggcttcatc aatgcgtacg cccagtttgg cattggctaa atttttctgt gcgccactat
     1561 ggtcacgata gccgtgggtc gtaaaacgcg tggttgagac ggtgtaatcg acatcgccag
     1621 gctgtgtgcc gtctcccgtt gcgcccgttg ctttcagccc atagcgccag ctgccaaaac
     1681 tgccgtagta actactggct tcaatggttg gtggctgttg tccggtctgg gtggtgacat
     1741 tcattacccc accagacgcg ttgccataca gggcagagaa ggggccacgc agcacttcca
     1801 cattttgcac actgcttaaa tcgatgttgg atgtttgccc ttgcccgtcg ggcatggtgg
     1861 cgggaatacc gtccacatac aggcgaatac cgcgaatacc gtaagtggag cgggagccaa
     1921 atccgcgaat cgacagctgt aaatcttgcg catagttctg ccggttttgt acctgcaaac
     1981 caggcacgcc ggtcagtgat tcggacaagt taatgcgcgg tgttgccagg cgcatctcct
     2041 cgccatccac cacgcttact gctgctgggg tatccagttc tgaaaccacc tgcggtgcgg
     2101 cactgacaat catagtctgt tcatcagcgg caaaaacaac gggggaaagg acaagcagtg
     2161 cgggcaaaac ggtctgtcgg acggaaaaaa tcttcatgaa aaaagccagg ttaagaatgg
     2221 gaaaacgctg tcatggtaat aaaattgtaa acttatgcaa aacgaaacgg cacgatacgt
     2281 taattaattg agaaaattgt agtcgtaacg gcaagaaatg ctccacattt gagaaaataa
     2341 tgattaccat tcccatttat aacaagagcg tgacgatgat tacgcttagc gaagcattgt
     2401 gaagcagcaa aaatattggt tcatcaaagg gagtcgtcat gcatttacgt catctgtttt
     2461 catcgcgcct gcgtggttca ttactgttag gttcattgct tgttgcttca tcattcagta
     2521 cgcaggccgc agaagaaatg ctgcgtaaag cggtaggtaa aggtgcctac gaaatggctt
     2581 atagccagca agaaaacgcg ctgtggctcg ccacttcgca aagccgcaaa ctggataaag
     2641 gtggcgtggt ttatcgtctt gatccggtca ctctggaagt gacgcaggcg atccataacg
     2701 atctcaagcc gtttggtgcc accatcaata acacgactca gacgttgtgg tttggtaaca
     2761 ccgtaaacag cgcggtcacg gcgatagatg ccaaaacggg cgaagtgaaa ggccgtctgg
     2821 tgctggatga tcgtaagcgc acggaagagg tgcgcccgct gcaaccgcgt gagctggtag
     2881 ctgatgatgc cacgaacacc gtttacatca gtggtattgg taaagagagc gtgatttggg
     2941 tcgttgatgg cgagaatatc aaactgaaaa ccgccatcca gaacaccggt aaaatgagta
     3001 ccggtctggc gcttgatagc aaaggcaaac gtctttacac cactaacgct gacggcgaat
     3061 tgattaccat cgacaccgcc gacaataaaa tcctcagccg taaaaagctg ctggatgacg
     3121 gcaaagagca cttctttatc aacatcagcc ttgataccgc caggcagcgt gcatttatca
     3181 ccgattctaa agcggcagaa gtgttagtgg tcgatacccg taatggcaat attctggcga
     3241 aggttgcggc accggaatca ctggctgtgc tgtttaaccc cgcgcgtaat gaagcctacg
     3301 taacgcatcg tcaggcaggt aaagtcagtg tgattgacgc gaaaagctat aaagtggtga
     3361 aaacgttcga tacgccgact catccaaaca gcctggcgct gtctgccgat ggcaaaacgc
     3421 tgtatgtcag tgtgaaacaa aaatccacta aacagcagga agctacccag ccagacgatg
     3481 tgattcgtat tgcgctgtaa tagatatggc gagggtgaaa acggtgagac ttgcctgcct
     3541 tttatcacgg cgtatccggc actttcgtca gtaatctgaa tttgcccggc acgtagccgg
     3601 gcaattttgc aattaactcg ccgtttcagg cttaaacaca atttcctgtt tttcttcatc
     3661 ttcctcgacg actggcgcag tgctgtgaat ttcagcaacg cgtttgcgca caccaaacca
     3721 gcctataacc agcagaatac cgataatcgg cagcgccgcg atagtataag tcccgttcgg
     3781 gtaatcgaac gccatcagca caaggacact cagtaaaaac agtaatgtca gccaggaagt
     3841 gaagggcgcg ccaggcagtt taaaactgac atccgctgct ttgccttctt taatcgcttt
     3901 acgcaggcgc atctggcaca cgatgataaa cgcccatgaa gcgatgattc ccagcgacgc
     3961 gaagttcaac acaatctcaa atacgcgcga cggcaccaga tagttgagga atacgccgac
     4021 gacatacaca accagtgtcg ctagaatccc ggcatacggc acatgctgac gactcatttt
     4081 cgccataaaa ctcggtgcgg aaccgcccat cgccattgag cgcagaatac gtccggtgca
     4141 gtacagacct gagttcaggc tggagagggc agcggtcagc accacaatgt tcataatgct
     4201 gccgatatat ggcacaccca gtttagagaa aaacgtcacg aacggacttt gccccgcctg
     4261 atacgcgctc cacggcaata acataaccag caacaccacg gagccgacgt aaaacaggcc
     4321 aatacgccaa atcacactgt taatggcttt aggcaccatg gtctgcggat ctttacattc
     4381 tccggcagct gtacccacca tttcaatgga ggcaaaagca aacactacgc cctgaatcaa
     4441 caccagcgca ggcagcaaac cgtgggggaa gaagccgcca ttatcggtga ttaaatgaaa
     4501 gccagtggtg ttgccatcca gcggctgacc actaccgagg aacactgtac ccacgaccaa
     4561 aaaggtcaca atggcgagca ctttaataag cgcaaaccag aactccatct ccgcaaacca
     4621 tttcacaccg atcatattca tggtgccaac gatggtaagt gcagcgagcg caaagaccca
     4681 ctgcggcacg ccgccaaacg caccccagta atgcatatac agagcgacgg cggtaatatc
     4741 aacaatcccc gtcatcgccc agttgatgaa gtacatccag ccagcaacat aagcggcttt
     4801 ctcacccaaa aactcacggg cataagagac aaaactgcca ctggaagggc ggtgtagcac
     4861 cagctcaccc aatgcacgca gaataaaaaa cgaaaacaag ccacaaatta aataaaccag
     4921 tgccagtgct ggacccgcca tttgcagtcg ggctcctgca cctaaaaaca agccggtgcc
     4981 aatcgcgccg ccaatggcga tcatctgtac ctggcgattg cccatcgctt tgtgataccc
     5041 ctcttcgtgg gcattaagcc agcggcgttt cgcggcgtgt tgatctgaag tgtcggtgtc
     5101 gtgtttactc attgctctcc ctgattgctt taatgaaaaa gtcatataag ttgccatgaa
     5161 caatgtttat tcatcctggc gatgatagtt atcaccatta ttctttatgg gtataaaact
     5221 atcggcgcag catcctaccc gttatcgata tacgatgcaa aacatcccct tacaatcctg
     5281 aaggggattc atacaactga cgaaaaaatg acaaatactt ttgctggtta acctgtgtac
     5341 tgtcctacac ttaatcttta aaagattgtg aggggcatat gattaaggtg tatggcgtac
     5401 ccggatgggg ctctacaatc agtgagctga tgctaacact ggctgatatt ccttatcagt
     5461 tcgttgatgt cagtggtttt gaccacgagg gaacttcacg cgagttattg aaaaccctga
     5521 acccgttgtg tcagattccg acactggcgc tggaaaatga cgagattatg acggagacag
     5581 cggcgattgc attgatggtt ctcgatcgtc gcccggacct tgcgccaccg gttgggcgcg
     5641 ccgaacgtca gcagtttcaa cggctattgg tctggctggt tgctaatgtc tatccaacat
     5701 tcactttcgc cgattaccct gagcgttggg ctcctgacgc acctgaacag ttaaagaaga
     5761 atgttattga atatcgtaaa tcgctttata tctggctgaa ttcacaattg accgctgaac
     5821 cttatgcgtt tggtgagcaa ctaacgctgg tggactgtta tctttgcact atgcgcacat
     5881 gggggcctgg gcatgaatgg tttcaggata atgccacgaa tatcagtgcg attgctgatg
     5941 ctgtatgtca gttaccgaaa ttacaagaag tattaaaaag gaatgaaatt atttgagtgg
     6001 gataccagag gattatgtta tttattattc agtaacttta tccacaatga t
//
LOCUS       DAJVSY010000204         6051 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.206, whole genome shotgun sequence.
ACCESSION   DAJVSY010000204 DAJVSY010000000
VERSION     DAJVSY010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6051
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.206"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            29..922
                     /locus_tag="OQQ19_003818"
     CDS             29..922
                     /locus_tag="OQQ19_003818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1805268.1"
                     /translation="MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQ
                     IGARLLARTNRSVLLTAAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFTSS
                     APFIRAVSDTLSLFRRDYPGVHLQTREMNTREQIAPLIEGTLDMGLLRNTALPETLEH
                     AVIVHEPLMAMIPHDHPLANNPNVTLAELAKEPFVFFDPHVGTGLYDDILGLMRRYHL
                     TPVITQEVGEAMTIIGLVSAGLGVSILPASFKRAQLNEMRWVPIAEEDAVSEMWLVWP
                     KHHEQSPASRNFRIHLLNALR"
     gene            1057..2277
                     /gene="mlc"
                     /locus_tag="OQQ19_003819"
                     /gene_synonym="dgsA"
     CDS             1057..2277
                     /gene="mlc"
                     /locus_tag="OQQ19_003819"
                     /gene_synonym="dgsA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor Mlc"
                     /protein_id="HCS1805269.1"
                     /translation="MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAP
                     ASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALR
                     DLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTE
                     NGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQV
                     VIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNLGCLETIASVDSILE
                     LAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFN
                     PQKILIGSPLSKAADILFPVISDSIRQQALPTYSQHISVESTQFSNQGTMAGAALVKD
                     AMYNGSLLIRLLHG"
     gene            2402..3097
                     /gene="bioD"
                     /locus_tag="OQQ19_003820"
     CDS             2402..3097
                     /gene="bioD"
                     /locus_tag="OQQ19_003820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310326.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HCS1805270.1"
                     /translation="MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGS
                     KETPEGLRNKDALVLQSVSTIELPYEAVNPIALSEEESSVAHSCPINYTLISNGLANL
                     TDKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIA
                     NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLA
                     MLRSVLAVDRVTV"
     gene            complement(3050..4342)
                     /gene="clcB"
                     /locus_tag="OQQ19_003821"
     CDS             complement(3050..4342)
                     /gene="clcB"
                     /locus_tag="OQQ19_003821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001296088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="voltage-gated ClC-type chloride channel ClcB"
                     /protein_id="HCS1805271.1"
                     /translation="MHHLHIYPDLRTMFRRLLIATVVGILAAFAVAGFRHAMLLLEWL
                     FLNNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLMGWQKFTQQRPHAPTDYMEALQ
                     TDGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTPRQEWKLWI
                     ACGAAAGMAAAYRAPLAGSLFIAEVLFGTMMLASLGPVIISAVVALLVSNLINHSDAL
                     LYNVQLSVTVQARDYALIISTGVLAGLCGPLLLTLMNACHRGFVSLKLAPPWQLALGG
                     LIVGLLSLFTPAVWGNGYSTVQSFLTAPPLLMIIAGIFLCKLCAVLASSGSGAPGGVF
                     TPTLFIGLAIGMLYGRSLGLWFPDGEEITLLLGLTEMATLLAATTHAPIMSTLMICEM
                     TGEYQLLPGLLIACVIASVISRTLHRDSIYRQHTAQHS"
     gene            complement(4501..5115)
                     /gene="dmsD"
                     /locus_tag="OQQ19_003822"
     CDS             complement(4501..5115)
                     /gene="dmsD"
                     /locus_tag="OQQ19_003822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707489.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tat proofreading chaperone DmsD"
                     /protein_id="HCS1805272.1"
                     /translation="MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWET
                     QWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDS
                     TLALRQWMREKGIQFEMKQYEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWST
                     RFLDVFIEKAEHPFYRALGELSRLTLAQWQSQLLIPVAVKPLFR"
     gene            complement(5158..6012)
                     /locus_tag="OQQ19_003823"
     CDS             complement(5158..6012)
                     /locus_tag="OQQ19_003823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit"
                     /protein_id="HCS1805273.1"
                     /translation="MGNGWHEWPLVIFTVLGQCVVGALIVSGIGWFAAKNDADRQRIV
                     RGMFFLWLLMGIGFIASVMHLGSPLRAFNSLNRIGASGLSNEIAAGSIFFAVGGLWWL
                     VAVIGKMPQALGKLWLLVSMALGVIFVWMMTCVYQIDTVPTWHNGYTTLAFFLTVLLS
                     GPILAAAILRAARVTFNTTPFAIISVLALIACAGVIVLQGLSLASIHSSVQQASALVP
                     DYASLQVWRVVLLCASLGCWLCPLIRRREPHVAGLILGLILILGGEMIGRVLFYGLHM
                     TVGMAIAG"
BASE COUNT         1579 a         1552 c         1575 g         1345 t
ORIGIN      
        1 taataatctc aaataagatg ttttaaatat gaatattgaa cttcgtcatc tgcgttactt
       61 tgttgctgtt gcggaagagc tgcatttcgg gcgcgccgct gcccgcctga atatttcgca
      121 accaccgcta agtcagcaga ttcaggcact ggagcaacaa attggtgccc gactgctggc
      181 acgaactaat cgcagtgtat tgctgacggc agcaggaaaa cagtttcttg cagatagtcg
      241 gcaaatcctg tctatggtag atgacgctgc cgctcgcgct gaaagactgc atcagggtga
      301 agcgggggag ttgcgcattg gttttacttc gtccgctcct tttattcggg cggtgtccga
      361 tacgttatcg ctgtttcgcc gtgattatcc cggtgtccat ttacaaaccc gcgaaatgaa
      421 cactcgtgag caaatcgctc cgctcattga aggaacgctg gatatgggat tgctgcgtaa
      481 cacagcgtta ccggagacgc ttgaacacgc agtcatcgtc catgaaccgc ttatggcgat
      541 gatcccgcac gatcatcccc tggcaaataa cccgaatgta acgttggctg aactggcgaa
      601 agaacccttc gtcttttttg atccgcacgt cgggacaggg ctgtatgacg atattctcgg
      661 gctgatgcga cgttaccatt tgacgcccgt catcactcag gaggtgggcg aggcaatgac
      721 catcatcggt ctggtttccg ccggtctggg tgtttcaatt ttgcctgctt catttaaacg
      781 tgctcagctc aacgaaatgc gctgggtgcc gattgctgaa gaggatgcgg tttctgaaat
      841 gtggttggtc tggccgaaac atcatgaaca aagtccagct tcgcgtaact ttcgtattca
      901 tctgctgaat gctctcaggt gagggaaatt tcagcgaaaa agcccgaaaa atgtgctgtt
      961 aatcacatgt ctaagtaaaa atttgacgac acgtattgaa gtgcttcacc atagcctaca
     1021 gattatttcg gagcgcgaaa atatagggag tatgcggtgg ttgctgaaaa ccagcctggg
     1081 cacattgatc aaataaagca gaccaacgcg ggcgcggttt atcgcctgat tgatcagctt
     1141 ggtccagtct cgcgtatcga tctttcccgt ctggcgcagc tggctcctgc cagtatcact
     1201 aaaattgtcc gtgagatgct cgaagcacac ttggtgcaag agctggaaat caaagaagcg
     1261 gggaaccgtg gccgtccggc ggtgggactg gtggttgaaa ctgaagcctg gcactatctt
     1321 tctctgcgca ttagtcgcgg tgagattttc cttgctctgc gcgatctgag cagcaaactg
     1381 gtggtggaag agtcgcagga actggcgtta aaagatgact tgccattgct ggatcgtatc
     1441 atttcccata tcgatcagtt ttttatccgc caccagaaaa aacttgagcg tctaacttcg
     1501 attgccataa ccctgccggg aattattgat acggaaaatg gtattgtaca tcgcatgccg
     1561 ttctacgagg atgtaaaaga gatgccgctc ggcgaggcgc tggagcagca taccggcgta
     1621 ccggtttata ttcagcatga tatcagcgca tggacgatgg cagaggcctt gtttggtgcc
     1681 tcacgcgggg cgcgcgatgt gattcaggtg gttatcgatc acaacgtggg ggcgggcgtc
     1741 attaccgatg gtcatctgct acacgcaggc agcagtagtc tcgtggaaat aggccacaca
     1801 caggtcgacc catatggtaa acgctgttat tgcgggaacc tcggctgcct cgaaaccatc
     1861 gccagtgtgg acagtattct tgagctggca cagctgcgtc tcaatcaatc catgagctcg
     1921 atgttacatg ggcaaccgtt aaccgtggac tcattgtgtc aggcggcatt gcgcggcgat
     1981 ctactggcaa aagacatcat taccggggtg ggcgcgcatg tcgggcgcat tcttgccatc
     2041 atggtgaatt tatttaaccc acaaaaaata ctgattggct caccgttaag taaagcggca
     2101 gatatcctct tccctgtcat ctcggacagc atacgtcagc aggcccttcc tacgtatagt
     2161 cagcacatta gcgttgagag tactcagttt tctaaccagg gcacgatggc aggcgctgcg
     2221 ctggtaaaag acgcgatgta taacggttct ttgttgattc gtctgttgca tggttaacat
     2281 tttttaactg ttctaccaaa atttgcgcta tctcaatttg ggccaggaaa gcataactta
     2341 gactttcaag gttaattatt ttcctagttt atatttgtga agcataacgg tggagttagt
     2401 gatgctgaag cgtttcttta ttaccggtac agacacttct gtagggaaaa cggtggtttc
     2461 ccgcgcattg ctacaagcgt tagcctccca gggaaaaaca gttgcgggat ataaacccgt
     2521 agcgaagggg agcaaagaga cacccgaagg gctgcgtaat aaagatgccc tggtgttgca
     2581 gagtgtttca accatcgaac tgccttatga agcagttaat cctatcgcgt taagcgaaga
     2641 agaaagtagc gtggcgcaca gttgcccaat caattacacc ctcatttcaa acggcctggc
     2701 aaacctgacc gataaagtcg atcatgtcgt ggtagaaggg actggcggct ggcgcagtct
     2761 gatgaatgat ttgcgtccac tctctgaatg ggtggtgcag gaacagttgc cggtgttgat
     2821 ggttgtcggt attcaggaag gttgcattaa ccatgcactg ctaacagctc aggcgattgc
     2881 caacgacggg ctgccgctca ttggctgggt ggctaaccga atcaacccag gactggcgca
     2941 ttatgcggaa atcattgatg tgctgggtaa aaaacttccg gcaccgctca ttggtgaact
     3001 gccttatctg ccgcgcgccg aacagcgaga actggggcaa tacatccgct tagctatgct
     3061 gcgcagtgtg ctggcggtag atagagtcac ggtgtaacgt ccgcgaaatt accgacgcaa
     3121 tgacgcaggc aatcaataaa ccggggagta gctgatactc cccggtcatt tcacatatca
     3181 tcaacgtcga cataatcggc gcgtgcgtgg ttgccgccaa cagtgtcgcc atctcggtca
     3241 atccgagtaa aagcgtaatt tcttcgccat cagggaacca taatcccagg ctacgaccat
     3301 acaacatgcc aatggcaaga ccgataaata gcgtcggtgt aaagacacca ccgggtgcgc
     3361 cggaaccgct actcgccagc acggcacaca gtttacaaag gaagatcccg gcaatgatca
     3421 ttaacagtgg tggggcggtt aaaaaggatt gtacggtgct atagccgttg ccccacactg
     3481 caggtgtgaa cagggaaagc agacccacga tcaacccgcc tagtgccagt tgccagggcg
     3541 gcgcaagttt gagactcaca aatccacgat gacaggcgtt cattaacgtt aacaacagtg
     3601 gtccgcacag acctgccagc acacctgtac tgataatcag cgcatagtca cgagcctgaa
     3661 ccgtcactga gagttgtacg ttgtagagta acgcgtcgct atgattaatc agattgctaa
     3721 ccagcaatgc cacgacggcg gaaataatca ccgggccgag agaggccaac atcatagtgc
     3781 caaacagcac ttcggctata aataaactgc cagcaagcgg ggcacgatag gccgcagcca
     3841 ttcccgccgc ggcgccacag gcgatccata atttccactc ctggcgtggc gtaaaacgtt
     3901 gggcaaaaca ggaggcggca agggcagcta aaagaatcat cgcaccttcg cgaccaattg
     3961 cactgccgct ggttactacc agcagcgagg caagcgattt aaccaggctt gctgcgtaat
     4021 cgaactgtcc atcggtttgc aacgcttcca tgtaatcggt cggcgcatga gggcgttgtt
     4081 gggtaaattt ctgccagccc atcagcaaca aacccgccgc cagtccgccg agcgccggag
     4141 ttagcaaccg tcgccagggg gaaaggtttg tcgctgcatt gaccagactg ccggagtcat
     4201 tattgaggaa caaccactcc agtagcagca tcgcatgacg aaacccggca acggcaaagg
     4261 ccgcgagaat accgacgact gttgcgataa gcagacggcg gaacatagtg cgcagatccg
     4321 gatagatgtg tagatgatgc atgagcagaa atgggcaatg aaacacgggc gactattttg
     4381 cggcaaaaga ggccagccgc aaaagcagtg cgtgctttaa gagataaaaa aacgtgacac
     4441 tgtaacctat tattgccgga ttgcgcgtaa tcgtcaccat ccggcaatat tacggtgatc
     4501 ctatcgaaac agcggtttaa ccgcgacagg aattaacagt tgtgattgcc attgcgccag
     4561 cgttaagcga gacagttcac ccagtgcacg gtagaaaggg tgttctgctt tttcgataaa
     4621 aacatcaaga aaacgtgttg accacggaaa aaggtgccat gccagcaatt cttcgcattc
     4681 tgtctggcga ccattctccg ccaaccacgc agccatcaac agcagtgaac caaaatgatc
     4741 ttccggttcg tattgcttca tttcaaactg aatgcctttc tcgcgcatcc actgacgaag
     4801 tgccaatgtt gaatcgccaa acagcacaga ttcgcgatcc agccagaccg acccccacgg
     4861 cggagacggc agtgcccacg ggccgacaaa caaacgctgc caggcctggg cgtgagtctc
     4921 ttcacactgt gtctgaaaag ccgtcaccag cggcgctaat gacgcttctg gtagaggcca
     4981 ctgagtttcc cagccgtcac tggtgagtac cgcaaccaga ggtgcggctt ccgcactctc
     5041 tggagcgtaa taaaacagcg cgcccaacac gcgcgccgcg acagaaaaat tatcttgctg
     5101 tgaaaaatgg gtcattccta acatcctgaa atgtgcgggt tgccccgcac caatttgtta
     5161 acctgcaata gccattccta ctgtcatgtg caggccataa aagagcacac gcccgatcat
     5221 ctcaccgcca agtatgagga ttagccccag aataagtccg gcaacgtgag gttcacggcg
     5281 acgaatgagc gggcaaagcc agcatccaag acttgcgcat aacaatacca cacgccagac
     5341 ctgtaaggag gcgtaatctg gtaccagtgc gctggcttgt tgcacggatg agtgaataga
     5401 cgccagagac aaaccttgca gcacaatcac cccggcacaa gcgatcagcg ccagaacgct
     5461 aatgatggca aatggtgtgg tattaaatgt aacgcgagct gcccgcagaa ttgcggcagc
     5521 aagtattgga ccgctcaaca ataccgtcag gaagaaagcc agcgtagtgt aaccgttatg
     5581 ccaggttggc acggtgtcga tttgatacac gcaggtcatc atccagacga aaatgacgcc
     5641 gagcgccatg ctgacaagta accagagttt ccccaacgct tgcggcattt taccgatgac
     5701 cgccaccagc caccatagtc caccaacggc aaaaaatatg gaaccggcag caatctcgtt
     5761 actcagacca gaagctccga ttcgattcag cgagttaaac gctcgcagtg gcgatcccag
     5821 gtgcatgaca gaggcaataa acccgatgcc catcaacagc cagaggaaaa acatgccacg
     5881 gacaatacgc tgacggtctg cgtcattttt ggcggcgaac cagccaattc cgctaacaat
     5941 cagcgcgcct actacgcatt gacccaatac ggtaaagata accagtggcc attcatgcca
     6001 tccatttccc attttacact tcctccggat tagccagata accagtggta t
//
LOCUS       DAJVSY010000205         6050 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.207, whole genome shotgun sequence.
ACCESSION   DAJVSY010000205 DAJVSY010000000
VERSION     DAJVSY010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6050)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6050)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6050
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.207"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(25..393)
                     /locus_tag="OQQ19_003824"
     CDS             complement(25..393)
                     /locus_tag="OQQ19_003824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805274.1"
                     /translation="MNMMRIFYIGLSGVGMMFSSMASGHDAGGLQSPACGVVCDPYIC
                     VNSDGISPELTRKYLGEKAAENLQSLQGYDPSEFTFANGVFCDVKEKLCRDDRYFGVD
                     GKRSGKINQITTKMLFMCRE"
     gene            919..1614
                     /gene="minC"
                     /locus_tag="OQQ19_003825"
     CDS             919..1614
                     /gene="minC"
                     /locus_tag="OQQ19_003825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HCS1805275.1"
                     /translation="MSNTPIELKGSSFTLSVVHLHEAEPKVIHQALEDKIAQAPAFLK
                     HAPVVLNVSALEDPVNWSAMHKAVSATGLRVIGVSGCKDAQLKAEIEKMGLPILTEGK
                     EKAPRPAPAPQAPAQNTTPVTKTRLIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIAD
                     GNIHVYGMMRGRALAGASGDRETQIFCTNLMAELVSIAGEYWLSDQIPAEFYGKAARL
                     QLVENALTVQPLN"
     gene            1638..2450
                     /gene="minD"
                     /locus_tag="OQQ19_003826"
     CDS             1638..2450
                     /gene="minD"
                     /locus_tag="OQQ19_003826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020801817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HCS1805276.1"
                     /translation="MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLR
                     NLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGV
                     AKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGIL
                     ASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVL
                     RASNQGEPVILDINADAGKAYADTVERLLGEERPFRFIEEEKKGFLKRLFGG"
     gene            2454..2720
                     /gene="minE"
                     /locus_tag="OQQ19_003827"
     CDS             2454..2720
                     /gene="minE"
                     /locus_tag="OQQ19_003827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division topological specificity factor
                     MinE"
                     /protein_id="HCS1805277.1"
                     /translation="MALLDFFLSRKKNTANIAKERLQIIVAERRRSDAEPHYLPQLRK
                     DILEVICKYVQIDPEMVTVQLEQKDGDISILELNVTLPEAEELK"
     gene            complement(3199..3318)
                     /locus_tag="OQQ19_003828"
     CDS             complement(3199..3318)
                     /locus_tag="OQQ19_003828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001131457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HCS1805278.1"
                     /translation="MPLSYAGYHHFIMMSLVSGEHNTPALSLQDESPGLVPAG"
     gene            complement(3279..3464)
                     /locus_tag="OQQ19_003829"
     CDS             complement(3279..3464)
                     /locus_tag="OQQ19_003829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805279.1"
                     /translation="MSRRYSSATITLVILFCRRPHCRKISVRQYYLKRVIFYPTTLQR
                     TAFKKCLFLMRDIIISS"
     gene            3565..3738
                     /locus_tag="OQQ19_003830"
     CDS             3565..3738
                     /locus_tag="OQQ19_003830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805280.1"
                     /translation="MSYSSFKIILIHVKNIIPIITATLILNYLNNSERSLVKQILIED
                     EIIVRATYLIPDI"
     gene            3740..4084
                     /locus_tag="OQQ19_003831"
     CDS             3740..4084
                     /locus_tag="OQQ19_003831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415690.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper family protein"
                     /protein_id="HCS1805281.1"
                     /translation="MKKKILAFGLISALFCSTPAMADMNRTTKGALLGAGVGLLTGNG
                     VNGVLKGAAVGAGVGAVTEKGRDGKNARKGAKVGAAVGAVTGVLTGNGLEGAIKGAVI
                     GGTGGAILGKMK"
     gene            4088..4423
                     /locus_tag="OQQ19_003832"
     CDS             4088..4423
                     /locus_tag="OQQ19_003832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmgD family protein"
                     /protein_id="HCS1805282.1"
                     /translation="MMMKKFALLAGLFVFAPMTWAQDYNIKNGLPSETYITCAEANEM
                     AKTDSAQVAEIVAVMGNASVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAID
                     DTMRAIGKK"
     gene            complement(4480..6050)
                     /locus_tag="OQQ19_003833"
                     /pseudo
     CDS             complement(4480..6050)
                     /locus_tag="OQQ19_003833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707067.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
BASE COUNT         1662 a         1396 c         1385 g         1607 t
ORIGIN      
        1 atagaacata atgtaaacaa ggcatcactc acgacacata aataacatct ttgtggtgat
       61 ttgattgatt tttccactcc gcttaccatc cacaccaaaa taacgatcat cacgacataa
      121 tttttcttta acatcgcaaa atacaccgtt agcgaatgta aattcgctgg gatcgtagcc
      181 ttgtaatgat tgtaagtttt cagcggcttt ttcgccgaga tatttccttg ttaactctgg
      241 ggaaatgcca tctgagttca cacaaatata cgggtcgcaa acaacgccgc acgccggaga
      301 ttgaagtccg ccagcgtcat gtccagacgc cattgatgag aacatcatcc ccacacctga
      361 caatccgata taaaaaatac gcatcatatt catagcacat cctgataatc caaccgtaca
      421 acacttatgc tcatttcatc atcaatccgt aatcaaaacc gctgacctgg acgagttacg
      481 atgacctgac agaagtatca gacgtcttct gcggtttcta tgattatgat agagcaattc
      541 tatggcggat attaagataa cgggtatctg ttctttaatg atgctgcaaa aaatggaaag
      601 ttaagaaagc ctggcgtggt gaaaaaatac acttgcctca atactggata tttaaacagg
      661 tctggagatg ctgtcacgat tagggtgcgg aaaaaggaag cgtaaataag aacaatcaaa
      721 agtacgacgg caatgggttg attgacaagg gtatttttta agctatgaat cagcgccatt
      781 tatcacagaa tagactttta ctctgaataa atgggagggt gacttgcctc aatataatcc
      841 agactataac atgccttata gtcttcggaa catcatcgcg cgctggcgat gattaatagc
      901 taattgagta aggccaggat gtcaaacacg ccaatcgagc ttaaaggcag tagcttcact
      961 ttatctgtgg ttcatctgca tgaggcagaa cctaaggtta tccatcaggc gctggaagac
     1021 aaaatcgctc aggcccccgc atttttaaaa catgcccccg ttgtactcaa cgtcagtgca
     1081 ctggaagacc cggtaaactg gtcagcgatg cataaggcgg tgtcggcaac cggtttgcgg
     1141 gttattggcg taagtggctg caaagatgcg caacttaaag ccgaaattga aaagatgggg
     1201 ctgcctatcc tgacggaagg aaaggaaaaa gcgccgcgtc cagctcccgc accacaggct
     1261 ccagcgcaaa atacaacgcc ggtcacaaaa acgcgtttaa tagatacccc ggtgcgttcc
     1321 ggtcagcgta tttatgctcc acaatgtgat ctgattgtta caagccacgt tagcgctggg
     1381 gccgaattga ttgccgatgg gaacattcat gtctatggca tgatgcgcgg tcgtgcgctt
     1441 gcaggggcaa gtggtgaccg ggaaacgcaa atattttgta cgaacctgat ggcggaactg
     1501 gtgtccatcg caggtgaata ctggctgagt gatcaaatcc cagcagaatt ttatggcaaa
     1561 gcggcgcgac tgcagttagt cgaaaacgct ttgaccgttc aaccgttaaa ttgatccctt
     1621 tttaacaagg aatttctatg gcacgcatta ttgttgttac ttcgggcaaa gggggggttg
     1681 gtaagacaac ctccagcgcg gccatcgcca ctggtttggc ccagaaggga aagaaaactg
     1741 tcgtgataga ttttgatatc ggcctgcgta atctcgacct gattatgggt tgtgaacgcc
     1801 gggtcgttta cgatttcgtc aacgtcattc agggcgatgc aacgctaaat caggcgttaa
     1861 ttaaagataa gcgtactgaa aatctctata ttcttccggc atcgcaaaca cgcgataaag
     1921 atgccctcac ccgtgaaggg gtcgccaaag ttcttgatga tctgaaagcg atggattttg
     1981 aatttatcgt ttgtgactcc ccggcaggga ttgaaaccgg tgcgttaatg gcactctatt
     2041 ttgcagacga agccattatt accaccaacc cggaagtctc ctcagtacgc gattctgacc
     2101 gtattttagg cattctggcg tcgaaatcac gccgcgcaga aaatggcgaa gagcctatta
     2161 aagagcacct gctgttaacg cgctataacc caggccgcgt aagcagaggt gacatgctga
     2221 gcatggaaga tgtgctggag atcctgcgca tcaaactcgt cggcgtgatc ccagaggatc
     2281 aatcagtgtt gcgcgcctct aaccagggtg aaccggtcat tctcgacatt aacgccgatg
     2341 cgggtaaagc ctacgcagat accgtagaac gtctgttggg agaagaacgt cctttccgct
     2401 tcattgaaga agagaagaaa ggcttcctca aacgcttgtt cggaggataa gttatggcat
     2461 tactcgattt ctttctctcg cggaagaaaa acacagccaa cattgcaaaa gaacggctgc
     2521 agattattgt tgctgaacgc cgtcgcagcg atgcagaacc gcattatctg ccgcagttgc
     2581 gtaaagatat tcttgaggtc atttgtaaat acgtacaaat tgatcctgag atggtaaccg
     2641 tacagcttga gcaaaaagat ggcgatattt ctattcttga gctgaacgtg accttaccgg
     2701 aagcagaaga gctgaaataa gcccgctgta aaaacgcatt tatcttcaag gcagagtcat
     2761 ttctgccttg agtttttcat ccctctcatc cacgttgtgg taaagcggcg agtattcttg
     2821 ctgatactcc tcattgctat ttccacctcc ccctttacac cttaaggctg ttcccacgca
     2881 cagaacaaaa tgtttatgcc tggttgagta aataacctca ttgttagtgt ggatacactg
     2941 ggggatgata accccgcaat ttcattattc attgttctcc cataggatga ggtttcccgc
     3001 cgtaactggc gggctttttt tgccccagaa ttttcccttt tagccccctg taaacgaaaa
     3061 ctgcgccgaa gcgcagttta atcgttgatg gtcagaacga ccagttcacg atatatactg
     3121 cgggtatcga ctgatttcga ttccatgcca ttggataaat gatagtagcg tctaagtgac
     3181 ctaagctctg ctgcaacatc agcccgcagg caccagacca ggggattcat cctgaagaga
     3241 cagcgcaggt gtattgtgtt caccactcac caaagacatc atgatgaaat gatgatatcc
     3301 cgcataagaa agaggcattt tttaaacgca gtgcgctgaa gtgtagttgg ataaaaaatc
     3361 actcttttca gataatactg tcgtacgctt atctttcgac aatgaggccg tcggcaaaat
     3421 aaaatgacta atgtaatcgt tgctgatgaa tatcttctgc tcacataaaa atcacacaat
     3481 aatattgata aatcagatta tcttaccttt acaacattgc gttaacagtc aatgacactt
     3541 cttgaataaa aatattgcta atcaatgagt tattcctcat ttaagattat tctcattcac
     3601 gtaaaaaaca taattcctat catcacagcc acgctcattt tgaattatct gaataatagc
     3661 gagcgttctt tagttaagca gatcttaatt gaagacgaaa ttattgtgcg tgcaacttac
     3721 ttaataccgg acatctaagt tgaagaaaaa aatacttgcc ttcgggctta tctcagcatt
     3781 gttctgctcc acgccagcga tggcggatat gaatcgcacc acgaaaggtg cattgctagg
     3841 cgcaggcgtt ggtttactta ctggcaatgg tgttaatggc gtactgaaag gtgcagctgt
     3901 tggcgctggt gttggtgcag taacagaaaa aggccgcgac ggtaaaaatg cgcgtaaagg
     3961 tgcaaaagta ggtgccgccg ttggtgctgt cactggcgtt ctgaccggca atggcctcga
     4021 aggggcgatt aaaggtgccg tgattggcgg tacgggtggt gcaattctgg gtaaaatgaa
     4081 ataaggaatg atgatgaaaa aatttgcttt actggcgggc ctgtttgttt tcgcaccaat
     4141 gacctgggcg caggactaca atattaaaaa cggtttaccg tcagaaacct atattacttg
     4201 cgcagaagcc aacgaaatgg caaaaactga cagcgcacag gttgcagaaa ttgttgcggt
     4261 aatgggtaat gccagcgttg ccagccgtga tttaaaaatt gagcaatctc cggaactgag
     4321 cgccaaagtg gtagaaaaac tgaatcaggt ttgcgctaaa gacccgcaaa tgctgttgat
     4381 cacggcaatt gatgacacca tgcgtgctat cggcaaaaaa taatatttca tatgtaccgc
     4441 gtcgatgaat acgacgcggt tttttagcta acggcgggat cagaacttat atttcaggcc
     4501 caccatcact gcggtgtcat tgtagccatt atcacccagc tgcacgccca cattccccca
     4561 gacgctggcc gctggattca ggttgccatt tacgccaagt ttaatttccc ccaaattact
     4621 cgccccatct tgttcgactt tcacaccgtt cattgagaca gcaaaatctt tactgttatg
     4681 gatccagttc atttcaacaa aaggttcaaa gtcgtcaccg tgcggaccgc tgtttttctc
     4741 ctgagtacga ataaaggtgc ggaaaccaag tcgggtctgg atgttgttat ttgcgtcatt
     4801 ctcaatacgt gagccattgg cttcggtgtg cgcattatga tcgacgccca tccagatagc
     4861 ctgtgcctgt ggctggaata tccacgtgta tttcgccgct tccagaccaa aggatttatt
     4921 cagggcaaag ccctaacccg cttccagcga gacggttgcg cctttcgcac tataggattc
     4981 ataggctaat tcatcccctt tcaccgagtt tttaaaccag ctatattgcg cccaggcgtc
     5041 aatgtatgcg ccttttttac tgatgtcatc ggcaaaccaa gtggcataca gccctgcgca
     5101 atagcctctg acactccctt tcgaacgata atccgacacg ctggaatgag ttgagttgta
     5161 gtcgcgggca taaccagcca tcactcccaa acgccaactg tcactgtcgg taaaaccacc
     5221 ggttaacaga tcggccccta actgcgagac gtagcgatgc gaggtcgttc tcaactgtcc
     5281 gttgctgtca cgccaggcat tatgcccgcc aatttgacgt agccaaagtc ggcttgaacg
     5341 ctcctgttca gttacaggat cgatgtagcg catttcaccc gcacggtcgt tcagacgcat
     5401 aacaaaaaga gtgttagcgg ctgccaggtt ggcgacgtaa cttccagctt cggggcgcag
     5461 gacgggggta ggcgtttctg ttggttctga atttccctct gagctgttat cctcctcatt
     5521 cactgactga taacttgtca aataccagtt tttgccttgt tgttttagtt gatattcgaa
     5581 agctccagct gcaatccttg catcaccttg tctgaaggct tctgctggag attcatcgcc
     5641 attcacagtt atgagttcga tcccgtttag cgtggccgcg ccgcttcctc cagcattttt
     5701 cacatagacg gtagttgaac ccgaagtatt accctcaaca ataagtctgt ccgtagccga
     5761 tttatcatca cctaatacgg tgcggatatt aagctgacca ttattaccga cataattacc
     5821 ttttacggtt aatgtttttc cttgggtaaa tgtttgacca tcatcatacg aaagattgat
     5881 aatactgtct gaattagtca gatgggtaac aacggagtca tctttcatat tccagattgt
     5941 attttctgaa agcttcagcg tggttgtgcc gctaacgagt ttagtcgctc catttagaat
     6001 agagtcggac gaaattatgt ttaagtcacc tccagtatta ttaaccagaa
//
LOCUS       DAJVSY010000206         5815 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.208, whole genome shotgun sequence.
ACCESSION   DAJVSY010000206 DAJVSY010000000
VERSION     DAJVSY010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5815
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.208"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..856
                     /gene="pdeC"
                     /locus_tag="OQQ19_003834"
     CDS             <1..856
                     /gene="pdeC"
                     /locus_tag="OQQ19_003834"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="c-di-GMP phosphodiesterase PdeC"
                     /protein_id="HCS1805283.1"
                     /translation="FALPAGILGSLVLLLLWLRIRQNYLSPKRKLQRALEKHQLCLYY
                     QPIIDIKTEKCIGAEALLRWPSEQEQVMNPAEFIPLAEKEGMIEQVTDYVIDNVFRDL
                     GDYLATHADRYVSINLSASDFHTSRLIARINQKTEQYAVRPQQIKFEVTEHAFLDVEK
                     MTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDILKIDKSFVETLTTHKTSHLIA
                     EHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGWFFAKAMPPQVFMQWMEQLP
                     ARELTRGQ"
     gene            complement(859..1182)
                     /gene="soxS"
                     /locus_tag="OQQ19_003835"
     CDS             complement(859..1182)
                     /gene="soxS"
                     /locus_tag="OQQ19_003835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide response transcriptional regulator
                     SoxS"
                     /protein_id="HCS1805284.1"
                     /translation="MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRT
                     VTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPSD
                     YRHRL"
     gene            1268..1732
                     /gene="soxR"
                     /locus_tag="OQQ19_003836"
     CDS             1268..1732
                     /gene="soxR"
                     /locus_tag="OQQ19_003836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensitive transcriptional activator SoxR"
                     /protein_id="HCS1805285.1"
                     /translation="MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSG
                     NQRRYRRDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREEL
                     DRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEEGTGARLLEDEQN"
     gene            2278..3627
                     /gene="ghxP"
                     /locus_tag="OQQ19_003837"
                     /gene_synonym="yjcD"
     CDS             2278..3627
                     /gene="ghxP"
                     /locus_tag="OQQ19_003837"
                     /gene_synonym="yjcD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanine/hypoxanthine transporter GhxP"
                     /protein_id="HCS1805286.1"
                     /translation="MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVI
                     VVPGMLGKAGFPPAAVFVATCLVAGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLG
                     QHISVPVALGAVFLMGVLFTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANG
                     VGLVIKNPLDGLPVALGDFATFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGL
                     IFDPNVHFSGVFGMPSLSDENGNSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTI
                     RAVAGQANLLDKDGQIIDGGKALTTDSMSSVFSGLVGAAPAAVYIESAAGTAAGGKTG
                     LTAITVGVLFLLILFLSPLSYLVPGYATAPALMYVGLLMLSNVAKIDFADFVDAMAGL
                     VTAVFIVLTCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVVIAVALVTFYAGGWAI"
     gene            3779..5428
                     /locus_tag="OQQ19_003838"
     CDS             3779..5428
                     /locus_tag="OQQ19_003838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="HCS1805287.1"
                     /translation="MEIFFTILIMTLVVSLSGVVTRVMPFQIPLPLMQIAIGALLAWP
                     TFGLHVEFDPELFLVLFIPPLLFADGWKTPTREFLEHGREIFGLALALVVVTVVGIGF
                     LIYWVVPGIPLIPAFALAAVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGL
                     VSLKFAVAVAMGTMIFTVGGATVEFMKVAIGGILAGFVVSWLYGRSLRFLSRWGGDEP
                     ATQIVLLFLLPFASYLIAEHIGVSGILAAVAAGMTITRSGVMRRAPLAMRLRANSTWA
                     MLEFVFNGMVFLLLGLQLPGILETSLMAAEIDPNVEIWMLFTDIILIYAALMLVRFGW
                     LWTMKKFSNRFLKKKPMEFGSWTTREILIASFAGVRGAITLAGVLSIPLLLPDGNVFP
                     ARYELVFLAAGVILFSLFVGVVMLPILLQHIEVADHSQQLKEERIARAATAEVAIVAI
                     QKMEERLAADTEENIDNQLLTEVSSRVIGNLRRRADGRNDVESSVQEENLERRFRLAA
                     LRSERAELYHLRATREISNETLQKLLHDLDLLEALLIEENQ"
     gene            complement(5582..>5815)
                     /locus_tag="OQQ19_003839"
     CDS             complement(5582..>5815)
                     /locus_tag="OQQ19_003839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HCS1805288.1"
                     /translation="MFNTRLYRVNFDEASVQGMGISILRGEENIPIDSDTLVTLQKFF
                     EEDCTSHTGMSQTEDNINAVAMKITADIMQHAD"
BASE COUNT         1257 a         1376 c         1603 g         1579 t
ORIGIN      
        1 ttttgcgttg cccgccggta ttttggggag tcttgttctg ctattactct ggctacgtat
       61 tcgacaaaac tatttgtctc ccaaacgcaa attgcaacgc gctctagaaa aacatcaact
      121 ttgtctttat taccagccaa taatcgatat caaaacagaa aaatgtatcg gcgctgaagc
      181 gttgttacgt tggcctagtg agcaggagca agtaatgaat ccggcagagt ttattccgct
      241 ggcagaaaag gaggggatga tagaacaggt aactgattat gttattgata atgtcttccg
      301 cgatctgggc gattacctgg caacacatgc agatcgctat gtttctatta acctgtcggc
      361 ctccgatttt catacgtcac ggttgatagc gcgaatcaat cagaaaacag agcaatacgc
      421 ggtgcgtccg cagcaaatta aatttgaagt gactgagcat gcatttcttg atgtcgaaaa
      481 aatgacgccg attattctgg ctttccgcca ggctggttac gaagtggcaa ttgatgattt
      541 tggtattggc tactctaact tgcataacct taaatcattg aatgtcgata ttttgaaaat
      601 cgataaatcg tttgttgaaa cgctgaccac ccacaaaacc agtcatttga ttgcggaaca
      661 catcatcgag ctggcgcaca gcctggggtt aaaaacgatc gctgaaggcg tcgaaactga
      721 ggagcaggtt aactggctgc gcaaacgcgg cgtgcgctat tgccagggat ggttttttgc
      781 gaaggcgatg ccgccgcagg tgtttatgca atggatggag caattacccg cgcgggagtt
      841 aacgcgcggg caataaaact acaggcggtg gcgataatcg ctgggagtgc gatcaaactg
      901 ccgacggaaa acgcgggaga aggtctgctg cgagacataa cccaggtcca ttgcgatatc
      961 aaaaatcgga cgctcggtgg tgcgcaactc aacggcggcc agtaacaggc gacgttggcg
     1021 aatgtaatcg ccaagcgtct gatgcgtcac cgtgcggaac attcgttgca agtaccactt
     1081 tgaatagcct gatttttttg cgactacatc aatgttaagc ggctggtcaa tatgctcgtc
     1141 aatccatgcg ataagatcct gaataatttt ctgatgggac ataaatctgc ctcttttcag
     1201 tgttcagttc gttaattcat ctgttgggga gtataattcc tcaagttaac ttgaggtaaa
     1261 gcgatttatg gaaaagaaat taccccgcat taaagcgctg ctaacccccg gcgaagtggc
     1321 gaaacgcagc ggtgtggcgg tatcggcgct gcatttctat gaaagtaaag ggttgattac
     1381 cagtatccgt aacagcggca atcagcggcg atatagacgt gatgtgttgc gatatgttgc
     1441 aattatcaaa attgctcagc gtattggcat tccgctggcg accattggtg aagcgtttgg
     1501 cgtgttgcca gaagggcata cgttaagtgc gaaagagtgg aaacagcttt cgtcccaatg
     1561 gcgagaagag ttggatcggc gcattcatac cttagtggcg ctgcgtgacg aactggacgg
     1621 atgtattggt tgtggctgcc tttcgcgcag tgattgcccg ttgcgtaacc cgggcgaccg
     1681 cttaggagaa gaaggtaccg gcgcacgctt gctggaagat gaacaaaact aaagcgccac
     1741 aagggcgctt tagtttgttt tccggtcttt gtctttctct ctatcccgct ggtacacagg
     1801 agggtttccc ccgacgtcaa cacacctcat tcgagcacgt ggtggaggtt ccggttggtg
     1861 ttgatgcttt aattgtatgt caccgacgtt tcttcgccag tgtaaaagta tactttttaa
     1921 ccgcaatatt tttgtcatct cagacgattt tttatcgcaa tcctgaacgg tatacggctc
     1981 gataacgctg caatcttgcg caccgacgat aacgtttgcg catcaattgc ctgttttttc
     2041 atcgtcaaga caataaaaga gaaaaaagca gcaaacttcg gttgaaaaag ccgctatgat
     2101 cgccggataa tcgtttgctt tttttaccac ccgttttgta tgcgcggagc taaacgtttg
     2161 cttttttgcg acgcagtaaa ttgtcgcaaa cctggagcag gaagataacg tttcgctggc
     2221 aggggattgt ccgccacgca tcttgacgaa aattaaactc tcaggggatg ttttcttatg
     2281 tctacgccat cagcgcgtac cggcggttca ctcgacgcct ggtttaaaat ttcacaacgt
     2341 ggaagcactg tccgtcagga agtggttgcc gggttaacaa cgtttctggc gatggtctac
     2401 tcggtcatcg tcgttccagg tatgttgggt aaagcaggct tcccgcctgc ggcagttttc
     2461 gttgcaacct gtctggttgc cggactcggt tctatcgtga tgggtctgtg ggctaatctg
     2521 ccgttggcga ttggttgcgc catctccctg acggcgttta ccgcattcag cctggtgctg
     2581 gggcaacata ttagcgtacc tgtcgcgctg ggtgccgtgt tcctgatggg tgtgctgttt
     2641 acggtaattt ctgccacggg tatccgtagc tggattttgc gcaacttgcc gcacggtgtg
     2701 gcgcacggca cggggatcgg tatcggtctg ttcctgctgc tcattgccgc taatggtgtt
     2761 ggtctggtga ttaaaaaccc gcttgatggt ctgcccgttg cgctgggtga tttcgcgacc
     2821 ttcccggtga ttatgtcact ggtaggtctg gcggtgatca tcggcctgga aaaactgaaa
     2881 gtccctggtg gcattctgct gaccattatc ggtatctcaa ttgtcggttt gatcttcgat
     2941 cctaacgtcc atttctccgg cgttttcggc atgccttcat tgagcgatga aaacggcaat
     3001 tcactgattg gcagcctgga cattatgggc gcgctgaatc ctgtagtcct gccaagcgtt
     3061 ctggcgctgg tgatgacggc agtatttgat gccaccggaa ctatccgtgc cgtcgccggc
     3121 caggcgaacc tgctggataa agatgggcag atcatcgacg gtgggaaagc actgaccact
     3181 gactccatga gcagcgtttt ctctggcctg gtgggtgctg ctccggcagc ggtatacatc
     3241 gagtctgcgg cgggtacggc ggcgggcggt aaaaccggtt tgacggctat caccgttggc
     3301 gtgctgttcc tgctgattct gttcctctct ccgctctctt acctcgttcc ggggtatgca
     3361 acggctccgg cgctgatgta cgttggcctg ctgatgctga gcaacgtggc gaaaatcgac
     3421 tttgctgatt ttgttgatgc gatggcgggt ctggttacgg cggtattcat cgtgctgacc
     3481 tgtaacatcg taacaggcat catgatcggc ttcgcgactc tggtgattgg tcgtctggtt
     3541 tccggcgaat ggcgcaagtt gaacatcggt acggtcgtta tcgccgtggc gctggtgacc
     3601 ttctatgcgg gtggctgggc tatctaatct ttcatcggat tctgaaaacg ggtggcaatg
     3661 gctgcccgtt tttattttct ccgcacattg tgtgagcttt tgcgatattc tgaaaaaatg
     3721 agaattcagg cataacgcct ttctcagatc ataaaaaaac atcgcaaaca gggaacgcat
     3781 ggaaatcttc ttcaccatac tgataatgac cctcgtggtc tcgctgtccg gggtggtcac
     3841 tcgtgtcatg ccctttcaga tcccgcttcc gcttatgcaa atcgccatcg gtgcgctact
     3901 ggcgtggccg acgtttggtt tgcatgtgga gtttgatcct gaactctttt tagtcttgtt
     3961 tatcccgccg ttgctgttcg ctgatggctg gaaaacgccg acccgtgaat ttctcgaaca
     4021 tggtcgagag attttcggcc tcgcgctggc gctggtggtg gtcaccgtgg tcggcattgg
     4081 cttccttatt tactgggtgg tgccgggcat tccgctgatc cccgcctttg cgctggcggc
     4141 ggtactttct ccgaccgatg ctgtggcgct ctccggaatt gttggcgaag ggcgcatccc
     4201 gaaaaaaatc atgggcattt tgcagggcga agcgttgatg aatgacgcct ccggcctggt
     4261 gtcgttgaag tttgccgtgg cagtggcgat ggggacgatg atcttcaccg tcggcggtgc
     4321 gacggtcgaa tttatgaaag tagccattgg tggtattctt gccggttttg tggtgagctg
     4381 gctgtatggt cgctcgctgc gattcctcag ccgctggggc ggtgatgaac ccgcgacgca
     4441 gatcgttctg ctgttcttgc tgccattcgc ttcttatctg attgccgaac atattggcgt
     4501 ttccggcatc ctcgctgcgg ttgccgccgg gatgaccatc acccgctccg gtgtgatgcg
     4561 ccgtgcgccg ctggcaatgc gcctgcgcgc aaacagcacc tgggcgatgc tggaatttgt
     4621 ctttaacggc atggtgttcc tgctgttagg tctgcagctg ccgggtattc tggagacgtc
     4681 gctgatggcg gcagaaatcg accctaacgt cgaaatctgg atgctgttta ccgatattat
     4741 tctgatatat gcggcgctga tgctggtccg tttcggctgg ctgtggacga tgaaaaagtt
     4801 cagcaaccgc ttcctgaaga agaagccgat ggagtttggt tcgtggacca cacgagaaat
     4861 cctgatcgcg tctttcgccg gggtgcgtgg ggcgatcact ctggccggtg tgctctctat
     4921 cccgctgctc ttgccggatg gtaacgtctt cccggcgcgc tatgagctgg tgttcctggc
     4981 ggctggcgtc attctcttct cgctgtttgt cggtgtggtg atgttgccta ttctgctaca
     5041 acacattgaa gtcgcggatc attcgcaaca attgaaagag gaacgtattg cgcgagcggc
     5101 aacggcagaa gtggcgattg tggcgatcca gaaaatggag gagcgtctgg cggcggatac
     5161 cgaagagaat atcgataacc agctgcttac ggaggtcagt tctcgcgtca ttggtaacct
     5221 gcgtcgtcgc gccgatggac gtaacgacgt tgaaagttcc gtgcaggaag agaaccttga
     5281 gcgtcgcttc cgtctggcgg cattgcgttc tgaacgtgct gaactgtacc acctgcgcgc
     5341 cacgcgggag atcagcaacg aaacgctgca aaaattactg cacgatctcg atttgcttga
     5401 agcgttgcta attgaggaaa atcagtaagc cgaaagcgac gtaaccaggc ccgaggtaat
     5461 ctgaaaaagg tgcaatcttt tgcaccttta acaggttagc tcgggctaac attcatgatt
     5521 ctaaaacaaa taagttatct ctcttgtaaa gtcaattcat tggctgttct tcgacttaac
     5581 ctcaatctgc gtgttgcata atatctgcag taatcttcat agcgactgca ttaatattat
     5641 cctcagtttg tgacatgcca gtatgagagg tacaatcttc ttcaaagaat ttctgtagtg
     5701 ttaccagggt atcactatca atggggatat tttcctctcc acggagtatg gaaatgccca
     5761 ttccctggac gctagcctca tcaaaattaa cccgatagag acgggtatta aacat
//
LOCUS       DAJVSY010000207         5792 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.209, whole genome shotgun sequence.
ACCESSION   DAJVSY010000207 DAJVSY010000000
VERSION     DAJVSY010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5792)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5792)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5792
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.209"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(135..2054)
                     /gene="dhaR"
                     /locus_tag="OQQ19_003840"
     CDS             complement(135..2054)
                     /gene="dhaR"
                     /locus_tag="OQQ19_003840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415719.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase operon
                     transcriptional regulator DhaR"
                     /protein_id="HCS1805289.1"
                     /translation="MSGAFNNDGRGISPLIATSWERCNKLMKRETWSVPHQAQGVTFA
                     SIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGF
                     HDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQALWNWAFCATPLFDSKGRLTGT
                     IALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVIS
                     WDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFE
                     SQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQT
                     RRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAAL
                     AEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDA
                     RRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNN
                     KLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPE
                     HLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRK
                     MKQHGIDAGQFKRRV"
     gene            2282..3391
                     /gene="dhaK"
                     /locus_tag="OQQ19_003841"
     CDS             2282..3391
                     /gene="dhaK"
                     /locus_tag="OQQ19_003841"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000733719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HCS1805290.1"
                     /translation="MKKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVAG
                     KVALLSGGGSGHEPMHCGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLI
                     IKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLV
                     GAAAERGDSLDACAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIH
                     GEPGIDRRSFSSLDQTVDEMFDTLLGNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGD
                     RVIALVNNLGATPLSELYGVYNRLTTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLK
                     VDDETLALWDAPVHTPALNWDKLGESNVTEQNSNC"
     gene            3363..3995
                     /gene="dhaL"
                     /locus_tag="OQQ19_003842"
     CDS             3363..3995
                     /gene="dhaL"
                     /locus_tag="OQQ19_003842"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase ADP-binding subunit
                     DhaL"
                     /protein_id="HCS1805291.1"
                     /translation="MSLSRTQIVNWLTRCGDIFSTESEYLTGLDREIGDADHGLNMNR
                     GFSKVVEKLPAIADKDIGFILKNTGMTLLSSVGGASGPLFGTFFIRAAQATQARQSLT
                     LEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVESLRQSSEQNLSVPVALEAASS
                     IAESAAQSTITMQARKGRASYLGERSIGHQDPGATSVMFMMQMLALAAKE"
     gene            4006..5424
                     /gene="dhaM"
                     /locus_tag="OQQ19_003843"
     CDS             4006..5424
                     /gene="dhaM"
                     /locus_tag="OQQ19_003843"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415716.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaM"
                     /protein_id="HCS1805292.1"
                     /translation="MVNLVIVSHSSRLGEGVGELARQMLMSDSCKIAIAAGIDDPQNP
                     IGTDAVKVMEAIESVADADHVLVMMDMGSALLSAETALELLAPKIAAKVRLCAAPLVE
                     GTLAATVSAASGADIDKVIFDAMHALEAKREQLGLPSSDTEISDTCPAYDEEARSLAV
                     VIKNRNGLHVRPASRLVYTLSTFNADMLLEKNGKCVTPESINQIALLQVRYNDTLRLI
                     AKGPEAEEALIAFRQLAEDNFGETEEVAPPTLRPVPPVSGKAFYYQPVLYTVQAKSTL
                     TVEEEQDRLRQAIDFTLLDLMTLTAKAEASGLDYIAAIFSGHHTLLDDPELLAAASEL
                     LQHEHCTAEYAWQQVLKELSQQYQQLDDEYLQARYIDVDDLLHRTLVHLTQTKEELPQ
                     FNSPTILLAENIYPSTVLQLDPAVVKGICLSAGSPVSHSALIARELGIGWICQQGEKL
                     YAIQPEETLTLDVKTQRFNRQG"
BASE COUNT         1458 a         1475 c         1429 g         1430 t
ORIGIN      
        1 agcaagtcaa cggaggatat cgcttcagct tttaagtgcg tgatagacaa gcccttaaac
       61 gatgctgaaa aatgttagcg tgcgccggaa tgaaatatag atcactctga tgtattagaa
      121 atcgtttctg tctttcatac ccggcgctta aactgccctg catcaatgcc atgttgcttc
      181 attttccgcc acagcgtagt gcggccgatt ccaagtaaag ccgacatttc ctgaatgcga
      241 ccgcctgtga cctgggctgc gttaataatt gcctcttttt caacttccgc aaatgacaga
      301 ctggtggaaa ggcgggtggc gctgacatca tctgttgcct gctcggtaaa cagatgttcc
      361 ggcaaatcac tgacgcgaat gcgcccatta tcactactca gagcaagatt ctcgatgacg
      421 ctgtaaagtt caaaatcgtt gcctggccat gcacaagaaa ccaggcgagc gagggcatcg
      481 tcatcaattt tcagccgcgt agagaagcgt ttttcaagac tgcgtaattt gttattcacc
      541 agcgccggaa tgctgccacg ccgcatacgc agaggcggga tggtaatttc aaatgcatgc
      601 agcgcgtaat acagctggcg actaaaacga ttttgttcca ccagcattgc gaggtccgcg
      661 gtcgttgttg caatcacttt gacatcaatt ggtattaaac gccgcgcatc cagtcgcgtg
      721 ataacaccct gcttgataac ctgaagcaaa gcagactgta actccaccgc cagatattca
      781 atcttttcaa gaaacagcgt gccgccgtgc gccagttcca gccgactcag acggccattt
      841 tcattgtccg tacgatcgcc accaataaat tcttccgcca gtgccgcatc accatataac
      901 tcacaattga cggcgatata aggacctgca gcacgctcgc tttcattatg aattgcctga
      961 cttagcagtg ccttgcccac gccctcttct ccacaaagca ggacaggaaa gctactgcgc
     1021 gccgcctggc gaccaaaatg aatcaagcgg cgggtttgcg gatcgtcctg tggcatatga
     1081 gcaaaggtat ggctgacttt tcctaattga ctggtcatca actgccgcat ctgttccaca
     1141 ggatggagca acaaaataaa gctggttccc tgcgtttcta ttatcggttt aagggttatc
     1201 accgcatcaa taaactgatg ctgactttca aaggttgctt ctacgtgttt gagcggatgt
     1261 gcctgtttta ttgcttgttg caatacggcg ggtaacgtta agagttcagt gattgcccgt
     1321 ccctgacttg ccgtcgcgtc aaggcgcaag acccgcgccg cctgggcatt gataaattgc
     1381 aaattaccct gctcgtccca gctaatcacg ccatcatcca tactttctaa cagggcatta
     1441 agttgattta aatgacggtt agtttcagcg agcaaactgt ccgtcagcag taaatttccg
     1501 acctcgcggg cgattgccaa cgtcaacggc aaatcagctg cggtagtttg ctcaaccgga
     1561 cacgccagcg ctattgttcc cgtcaatcgg cccttgctgt caaacaacgg cgttgcacaa
     1621 aaggcccagt tccagagtgc ctgtttgaaa tgttgatcgg ccatcgtttt cacggcctga
     1681 ccagagatag ccgctaacga tagcgcacaa gtaccaataa ttccctcggc gcaatacgtg
     1741 ccgtcatgga atccaagtgc acttagctgc tgcaaggttt gcggatcgcc attacggctg
     1801 agaatgcagg cggtttcatc gaggataaac agcgcacact ctcgcggtgc catatattcc
     1861 caggcatctt ccagcgcagc ctgcccgagc gtcagcatcg ctttcttacg ccgataaata
     1921 gaagcaaatg tcacgccctg ggcctgatgt ggtacgctcc atgtctcccg tttcatcagc
     1981 ttattgcatc gctcccagga ggttgcaatt aagggagata tgccccgacc atcgttgtta
     2041 aaagcgccac tcatatcccg catcccttat gacaaaaggt gttccggctc gcaattttaa
     2101 gtattagtac acgtaaaagt ttcaatatgg aacattcatt aaagcatatg tttcactatg
     2161 aaacataatt tgggctaatt ttcttttccc ttgcctgatg cacaatggat tcatcggcag
     2221 tcagtggtcg ccgtgtcgtt gaacatcatc catgccctac cgtaattgct ggagcaaaat
     2281 aatgaaaaaa ttgatcaatg atgtgcaaga cgtactggac gaacaactgg caggactggc
     2341 gaaagcgcat ccatcgctga cattgcatca ggatccggtg tatgtcaccc gagctgatgc
     2401 ccctgttgca ggaaaagtcg ccctgctgtc gggtggcggc agcggacacg agccgatgca
     2461 ctgtgggtat atcggtcagg ggatgctttc gggggcctgt ccgggcgaaa ttttcacctc
     2521 accgacgccc gataaaatct ttgaatgcgc catgcaagtt gatggcggcg aaggtgtact
     2581 gttgattatc aaaaattaca ccggcgatat tcttaacttt gaaacagcga ccgagttact
     2641 gcacgatagc ggcgtaaaag tgaccactgt ggtcattgat gacgacgttg cggtaaaaga
     2701 cagtctttat actgccgggc gacgcggcgt tgccaacacc gtattaattg aaaaactcgt
     2761 aggcgcagcg gcggagcgtg gcgactcact ggacgcctgt gcggaactgg ggcgtaagtt
     2821 gaataatcaa ggccactcaa taggtatcgc tctcggtgcc tgtaccgttc ctgccgcggg
     2881 caaaccttct tttaccctgg cggataatga gatggagttt ggcgtcggca ttcatggtga
     2941 gccgggtatt gaccgccgct ccttctcttc ccttgatcaa accgtcgatg aaatgttcga
     3001 caccctgctg ggaaatggct cataccatcg cactttacgt ttctgggatt atcaacaagg
     3061 cagttggcag gaagaacaac aaaccaaaca accgctccag tctggcgatc gggtgattgc
     3121 gctggttaac aatcttggcg caactccgct ttctgagctg tacggcgtct ataaccgcct
     3181 gaccacacgt tgccagcaag cgggattgac tatcgaacgt aatttaattg gcgcgtactg
     3241 tacctcactg gatatgaccg gtttctcaat caccttactg aaagttgatg acgaaacgct
     3301 ggcactctgg gacgccccgg tccacacccc ggcccttaac tgggataaat taggagaaag
     3361 caatgtcact gagcagaact caaattgtta actggctcac tcgttgtggc gatattttca
     3421 gcaccgagag cgagtatctt accggactgg atcgcgaaat tggcgacgct gaccacgggc
     3481 taaatatgaa ccgaggcttt agcaaagtgg tggaaaaact ccctgctatc gcagataaag
     3541 atatcggttt cattctcaag aataccggta tgacgctgct ttccagcgtc ggtggtgcca
     3601 gtggtccgct gttcggtacc ttctttatcc gcgccgcaca ggcgacccag gcacggcaaa
     3661 gcctgacact ggaagagctt tatcagatgt tccgcgatgg cgcggacggc gtaatcagtc
     3721 gcgggaaagc cgaacctggc gataaaacca tgtgtgatgt gtgggtgccg gtggtggaat
     3781 cgttacgtca gtccagcgag caaaatctct ctgttccggt ggcgctcgaa gctgccagta
     3841 gcatcgccga atccgctgca caaagtacga ttacgatgca agcccgcaaa ggccgcgcca
     3901 gttatctcgg tgaacgcagt attggtcacc aggatcccgg cgcgacctcg gtgatgttta
     3961 tgatgcaaat gttggcgtta gccgcaaaag agtaaggaat tggtgatggt aaacctggtc
     4021 atagtttcac atagcagccg actgggagaa ggtgtcggtg aattagcccg tcagatgtta
     4081 atgagtgata gttgtaaaat cgccattgcc gcgggaattg acgatccaca aaatcctatt
     4141 ggtaccgatg ccgtcaaagt gatggaggcc atcgaatctg ttgctgatgc cgaccatgtg
     4201 ctggtcatga tggatatggg tagcgcatta ttgagtgctg aaactgcgct ggaattgctg
     4261 gctcccaaga tcgccgcaaa agtacgtttg tgtgctgcgc cgttggtcga aggtacactg
     4321 gcagcaacgg tcagcgcggc ctcgggagcg gatatcgaca aagttatctt tgacgctatg
     4381 catgcgctgg aagccaaacg tgaacaactg ggtttaccgt cctccgacac tgaaatctct
     4441 gacacatgtc ctgcgtacga tgaagaagcc cgttctctgg cggtggtcat aaaaaaccgt
     4501 aacggcctgc atgtacgtcc ggcctcccgg ctggtttata ccttatcgac atttaatgcc
     4561 gatatgttgc tggaaaaaaa cggcaaatgc gtcacaccag agagtattaa ccagattgcg
     4621 ttactacaag ttcgctataa cgatacgctg cgcctgattg cgaaagggcc agaagctgaa
     4681 gaggcactga tcgctttccg tcagctggct gaagataact ttggtgaaac ggaggaagtc
     4741 gctccaccta ctctgcgtcc cgttccgcct gtttcgggta aagcctttta ttatcaacca
     4801 gttttatata cggtacaggc aaaatcaacc ctgaccgtgg aagaagaaca agatcgatta
     4861 cgccaggcta ttgacttcac gttattagat ctgatgacgt taacagcgaa agcagaagcc
     4921 agcgggcttg actatattgc cgcaatcttt tctggtcacc atacactgtt agatgatccg
     4981 gaactgctgg cggcggcaag cgaactcctt cagcatgaac attgcacggc agaatatgcc
     5041 tggcagcaag ttcttaaaga acttagccag caataccagc aactggatga tgaatatcta
     5101 caagctcgct atattgatgt ggacgatctt ctgcatcgca ccctggtcca cctgacccaa
     5161 acgaaagaag aactcccgca gtttaactcg ccaactattc tactggcgga gaacatttat
     5221 ccttccacag tactgcaact ggatccggcg gttgtaaaag gtatctgcct tagcgccgga
     5281 agtccggtat cccacagcgc cctaatcgcc cgtgaactgg ggattggctg gatttgccag
     5341 cagggtgaga aactgtatgc gatacaacca gaagaaacgc taacgctgga cgttaaaacg
     5401 caacgtttca accgtcaggg ttaagccact gttcggatgg catcgttctg atgtcatccg
     5461 gcaatttact cagcactaat ggtttttaac tacctgttat atttttcacc aatttatgat
     5521 gatttttctt cgctaatcac gaacccaacg ccgctggctg gctaataaac agacgttatt
     5581 tgatcactct atttcgccgt tatttatccc tttaattccc ttttctaaaa tgcctgacag
     5641 ttcgcagaat gagatttcga tcatgcagct agtgcgatcc tgaactaagg ttttctgata
     5701 cttgaatacc gttttattcg gtttcgccaa aggagaatga ttgatgaaat cccccgcacc
     5761 ttctcgcccg caaaaaatgg cgttaattcc ag
//
LOCUS       DAJVSY010000208         5595 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.210, whole genome shotgun sequence.
ACCESSION   DAJVSY010000208 DAJVSY010000000
VERSION     DAJVSY010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5595
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.210"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..401)
                     /locus_tag="OQQ19_003844"
     CDS             complement(<1..401)
                     /locus_tag="OQQ19_003844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000511771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS1805293.1"
                     /translation="MGILEQEMKRLAQQAGGSHKTVHDRIKLVQRFCERLVLAQNVQI
                     RRVEQLKARYIEGYVRERLAQGITKRSLQNEMAAVRCILKQAGRDRLAQSERLNNRSL
                     GLSGASRNGTKRAITPEHYRHVLETARAKDPG"
     gene            960..1106
                     /locus_tag="OQQ19_003845"
     CDS             960..1106
                     /locus_tag="OQQ19_003845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000285696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805294.1"
                     /translation="MYRIKTLASVAMFCDPVFAEVCTGKRIDRPDNRRFFQVVKRWAL
                     STTA"
     gene            complement(1266..1583)
                     /locus_tag="OQQ19_003846"
     CDS             complement(1266..1583)
                     /locus_tag="OQQ19_003846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016161430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HCS1805295.1"
                     /translation="MDRGEIWLVSLDPTTGHEQSGKRPVLIVSKASFNTFTRLPVVVP
                     VTSGGNFAREAGFTVSLDGAGTKTTGVIRCDQPRTIDMGARSGKRLERIPDAVVNEVL
                     ARL"
     gene            complement(1584..1841)
                     /locus_tag="OQQ19_003847"
     CDS             complement(1584..1841)
                     /locus_tag="OQQ19_003847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000557619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HCS1805296.1"
                     /translation="MYTTRLKKVGGSVMLAVPPAVLKTLGLSTDSEVGMTIDNGCLII
                     EPQKRPRYSLEELLAQCDPHAEISEEGREWIDAPAVGKEIL"
     gene            complement(2190..2396)
                     /locus_tag="OQQ19_003848"
     CDS             complement(2190..2396)
                     /locus_tag="OQQ19_003848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003842122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1805297.1"
                     /translation="MMLQDWHPADIIAGLKKRGTSLSALSRQAGLASSTLANALTRRW
                     PKGERLIAEALGIKPEQIWPSRYR"
     gene            complement(2393..2854)
                     /locus_tag="OQQ19_003849"
     CDS             complement(2393..2854)
                     /locus_tag="OQQ19_003849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000201268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805298.1"
                     /translation="MATIPTQTHPLLAVPFSAATDFTVLADHCENVAETLIESEDPVL
                     RLALCGRLAACLTLLQPTLNDPIPSHLTDSLTVDALPADMPRFVPDAELLCDYSLTLA
                     QLLIGQGMQPKVEQTITGLLCELVWYFAAEMKAPRWLRTADGVKFIDEVAA"
     gene            complement(3225..4829)
                     /locus_tag="OQQ19_003850"
     CDS             complement(3225..4829)
                     /locus_tag="OQQ19_003850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016239422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805299.1"
                     /translation="MITKELVDESNFISQLVDIGRFDESYQQSVAFLNKLERITIRND
                     NYFIVLANIAGALVDIGQMQNNKNASELGCNLMEDNKEAFISVLGECLYYYNYGNALS
                     NLVSITNPNDHTFKSIEELVSLKNIYWRSFKLSAEEQEEFQAELSVNLANSLRSQFRL
                     SESLRYYDLTNLKGLDIPQAWVNRSMSLMVLNLISSSFSIKLLKEVRAGYIKASVSKN
                     IPPQWESFYLERIAQTNEKIAEYAVDDETDEHDEALTQQEFEVLSPYRQFCLRNHLTL
                     SEHGLYCPCVGSATDDLVIASRGGVTGDFIIPMEMVLNRLKSEFSLARHLYFDYLHPQ
                     NTDYIKYESHFLELYNDEVLGIEIEKIRTAFRLCFGILDKIAVAICELYNLYPTTKKG
                     TPQKNIYFQNFWQLDVDNRRQLFEKVKSPGLLALYSIATDLNKDKGGELAFYKEWRNG
                     LEHKFLVVHKSDKPEDIYESYQLIEDILFIKESDFIHHFEHLLQITRSAIFSFAFMVR
                     QEGMKEKKEGIHYMTRELHAINYSAD"
     gene            complement(4842..5207)
                     /locus_tag="OQQ19_003851"
     CDS             complement(4842..5207)
                     /locus_tag="OQQ19_003851"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805300.1"
                     /translation="MVSDKRADIIVSLPQIKIPIEIKRDYHRDVWTALNGQLDKLYTK
                     NPDAAGHGIYLVFWFGSARPNSLPHLAKNTSQPENASAMENMLNETVPVDKRDRLSAI
                     VIDVSCEGIPPVEAPKSSV"
     gene            complement(5235..5444)
                     /locus_tag="OQQ19_003852"
     CDS             complement(5235..5444)
                     /locus_tag="OQQ19_003852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001044500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805301.1"
                     /translation="MNKTPANIMDLYSLLLDHIRDISNRIANENTDIYKQFWNEDSYG
                     RTLTPKPEESCRNIFLDLLRVRLNP"
BASE COUNT         1447 a         1346 c         1306 g         1496 t
ORIGIN      
        1 cccggatctt ttgcgcgggc ggtttccagc acatggcggt aatgctccgg cgtgatggcc
       61 cgcttcgtac cgttacggga tgcgccagac aggcccagcg agcggttatt cagtcgctca
      121 ctctgcgcca gcctgtcacg cccggcctgt ttcagaatgc agcgcaccgc cgccatctca
      181 ttttgcaggg aacgcttcgt gataccctgc gccagtcgtt cacgaacata tccctcaata
      241 taccgcgcct taagctgctc cacccggcgg atctgcacat tctgtgccag aaccagacgc
      301 tcacaaaacc gctgcaccag cttaatacgg tcgtgaacgg tcttatggct gccgcccgcc
      361 tgttgtgcca atcgcttcat ttcctgctcc agaatcccca tacattcccc ctttcatgat
      421 tgccgcaaac tcatccccaa aaactcaaca ctgatacagc gttccccggc gcacaggccg
      481 atagcccctg agttttgtcg gggctgcgaa cgatacctga gcgccggggc ggcagccgtt
      541 gaggtgtggt ggggcttcgg ttgtgctctc agagcagccg cccgcttgcg cgggtcatcc
      601 cccggatcgt ccagatccgc ctcggtatcg gttcatattc tccttatggg taaatggcct
      661 aaaaaggcgg tgtcagaatc cagccatgag ctggcgcagt tgagttttct ggtgcaggtc
      721 gaaagggctt gcgtgcgtca ctttcccgct ttgcgcggtt aaagtgacgc acggatctgg
      781 tgcagcatct gagatttatc gtctggtgca gttttacggt cacgcggcag caaagcctga
      841 cggcaatgca ggccgcagcc cgtaaggtaa aaggcgctga gggtgtcagc agatgcaggt
      901 tagccgggag aattccggcg cggtgcagat tcagaccagc aggctggcga agtaaaagga
      961 tgtatcgtat taaaactctg gcctccgtcg cgatgttctg cgacccggtg tttgcagagg
     1021 tctgcaccgg taaacggatc gaccgtcctg ataacaggcg cttctttcag gttgtgaagc
     1081 gttgggcgct gtctacgaca gcatagagca agggggagac tacgcctgtg ccgctggcgc
     1141 ggaaaggaga aactgttttt acctgcaaaa ggatttttta atcacttgtt gttataaaaa
     1201 atgagggcgc tgtatgtgac agcgccctcg ttcaggttac ataaaaaata tcagctcaga
     1261 atagcttaca gtcgagccag cacctcattc acgacagcat cgggtatacg ttccagccgc
     1321 ttaccgctcc gagctcccat atcaatggtt ctgggctggt cgcagcgaat aacgcccgtt
     1381 gtttttgttc ccgccccgtc cagtgaaacg gtaaaaccgg cttcgcgggc aaagtttccg
     1441 ccgctggtga cagggacaac aacaggcaac cgggtgaacg tgttaaacga tgccttcgat
     1501 acgatgagta ccggacgttt tccactttgt tcatggccag tggtgggatc cagtgaaacg
     1561 agccagattt ctcctctgtc catctacagg atctccttgc ccaccgcagg cgcatcaatc
     1621 cattcccgac cctcttcgct tatttcagcg tgcggatcgc actgcgccaa cagttcttcg
     1681 agcgaatagc ggggacgttt ttgaggttca ataatcaggc agccattatc aatggtcatg
     1741 cccacttcgc tgtccgtcga cagccctagc gttttcagca ctgcgggggg aaccgccagc
     1801 atgacggatc cgccaacctt tttcaggcga gtggtataca tagagcacct ccggatatta
     1861 tattttaata taacatccat gatagacgat gcacaactat tcatcagatt cattgtggtt
     1921 tccttagtgt aataaagcgt gaagaaagcc ttaatccatc ggaagacaga tccggcagtt
     1981 ttcaaaggcg acattgccgg taaaagggca accgtcctga tacatcaggc gcttctttca
     2041 ggtcatgaag catttcgtac aggcgggagc ttagtgcgta acaaagaagg ccgataatag
     2101 gaaactgctt ttgcagttca aaggattatg acggttcgga taaacaaaat gcggcgcagc
     2161 ttccgtatcc gggctgcgcc gcaggaacat cagcggtagc gcgaaggcca gatttgctca
     2221 ggcttgatgc ctaacgcttc ggcaattaac ctttcgcctt tgggccagcg gcgggtaagc
     2281 gcattagcca gcgtggagga cgccagacct gcctgacgcg aaagcgctga cagcgaagtg
     2341 cctcgttttt tcagcccggc gataatgtcg gcaggatgcc agtcctgcag catcatgcag
     2401 ccacctcgtc gataaacttc acgccatcgg cggtgcggag ccagcgcggg gctttcattt
     2461 cggcggcaaa ataccagacc agttcacata ataagcctgt tatcgtctgc tccacttttg
     2521 gctgcatccc ctgcccgata agaagttgcg ccagcgtcag tgagtaatca caaagtaatt
     2581 ctgcgtcggg gacaaatcgg ggcatatcgg caggtagagc atcaacggtc aggctgtcag
     2641 tcagatgaga cgggatgggg tcgttcagcg tgggttgcag caaagtgaga caggcggcaa
     2701 gtcgcccgca aagcgccagc cgcagcaccg gatcttcgct ttcgatcagg gtttcggcga
     2761 cgttttcgca gtggtctgcc agtacggtaa aatctgtggc agcactgaag ggaacagcaa
     2821 gtaacgggtg tgtctgagtg gggatcgtag ccataaaggc agcctccagt atgtggtttg
     2881 aaaaccacca ccagaggttc caatctcatg ggtggtggac tgaacgaggt tggaactacc
     2941 ggccatactg gaaccggcgc accttacggt gcccccgccc agcccaccat aattttggtg
     3001 tagctaagcg cgcgacataa aaaaagacgc agacgcgtca cgtgtcgcca gtatggttat
     3061 atttcggggt tccaatcccg gcacctgatt ttgcaggtgc gggtaaaaga taccgctttc
     3121 ggttgaaaac ggcaagggga agtcgtggaa tagagatcgc agattgttat aaatatacac
     3181 aatagttaat gttaacaaag acggcacata tattaacttt actctcaatc tgctgaatag
     3241 tttatcgcat gtaattctcg ggtcatatag tggataccct ccttcttttc tttcatcccc
     3301 tcttgcctca ccataaaagc aaacgaaaaa attgctgaac gagttatctg aagtaaatgc
     3361 tcaaaatggt gaataaaatc actttctttg ataaaaagaa tatcttctat tagttgataa
     3421 gattcgtaaa tgtcctcagg tttatcactt ttatgtacaa ctaaaaactt atgctctaaa
     3481 ccattgcgcc attctttata gaaagccaac tccccaccct tatctttatt caggtcggta
     3541 gcaatactgt acagcgccag aagccctggt gattttacct tttcaaataa ttgtcttctg
     3601 ttatcaacat ctaactgcca gaaattctga aaatagatat tcttctgagg tgtacctttt
     3661 tttgttgttg ggtaaagatt ataaagttca catatggcta ccgcaatttt atcaagaata
     3721 ccaaagcaaa gacgaaatgc cgtcctgatt ttttcaattt ctattcctaa aacttcgtca
     3781 ttatacaatt ccagaaaatg gctttcgtac ttaatgtaat ccgtattttg tggatgaaga
     3841 taatcaaaat aaagatggcg tgcgagtgaa aactccgatt taaggcgatt taataccatc
     3901 tccatgggaa tgataaaatc acctgttaca ccgcctcgcg aagcaatcac aagatcatct
     3961 gtagcactcc ctacacatgg gcaatacagg ccatgttctg ataaagtcag atgatttcta
     4021 agacaaaact gtcgatatgg gcttaacact tcgaactctt gttgtgtaag tgcttcatcg
     4081 tgttcgtcag tttcatcatc aacagcatat tctgcgattt tctcgttagt ctgcgctatg
     4141 cgttctaaat agaacgattc ccattgtggt gggatatttt ttgatacaga cgctttaata
     4201 tatcctgctc tcacttcttt tagtaacttg attgaaaatg aagatgaaat aagattgagg
     4261 accataagtg acatcgaacg gttgacccaa gcctgtggta tatctaatcc cttaagattg
     4321 gtaagatcat aatatctcaa tgactcactg agccgaaatt gacttcttaa tgaattagcc
     4381 aaattaacag atagttcagc ctgaaattcc tcctgctcct cagcagatag cttaaaagaa
     4441 cgccagtaga tattttttaa ggaaaccaat tcttctatcg atttgaatgt atggtcattg
     4501 gggttagtaa tgctcaccag attagatagc gcattaccat agttataata gtaaaggcac
     4561 tctcctaaca ctgatataaa tgcttctttg ttatcttcca tcaggttgca accaagctct
     4621 gacgcatttt tattattttg catctgcccg atgtcaacaa gagcacccgc aatgttcgcc
     4681 aatactataa agtagttatc gttcctgatt gttattcttt ccagtttgtt caggaacgca
     4741 actgactgtt gataagattc gtcaaatctt ccaatatcaa ccagttggct aatgaaatta
     4801 ctttcatcga caagttcttt tgttatcaaa ataaattttc cttatacaga ggatttcggt
     4861 gcttcaacag gaggtatgcc ctcacaggag acatctataa ctatcgctga taagcggtct
     4921 cttttatcaa ccggcacagt ttcattaagc atattttcca ttgcactggc gttttcaggt
     4981 tgagatgtat ttttcgccaa atgaggcagg gaattcggtc gagcagaacc aaaccaaaaa
     5041 accagataga taccgtgacc agcagcatcg gggtttttag tataaagctt gtccaattgc
     5101 ccattaagtg cagtccagac atcacgatga taatcacgct ttatctcgat aggtattttt
     5161 atctgcggta gtgaaacaat gatatctgcc cttttatcag aaaccatgtg tccttctggt
     5221 tcacagctta ttttttatgg attaagccgg acacggagta aatccagaaa aatattacgg
     5281 caactctctt caggtttagg cgttagggta cggccatagc tgtcttcatt ccagaattgc
     5341 ttataaatat cggtattttc attggcaatt cggttagaaa tatcccgtat atgatcaagc
     5401 aataatgagt aaagatccat tatgttggca ggcgttttat tcatcaatgt acttacagtc
     5461 tgcttccagt cggcatgatg gaactgtgat tctctataac gaattttctg attgctttgg
     5521 gcatgtgaga gatgatcccg ataactttca cattcaggca gcagtaataa gcgctcaagt
     5581 acttcactag catcg
//
LOCUS       DAJVSY010000209         5591 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.211, whole genome shotgun sequence.
ACCESSION   DAJVSY010000209 DAJVSY010000000
VERSION     DAJVSY010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5591
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.211"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(35..772)
                     /gene="bamD"
                     /locus_tag="OQQ19_003853"
     CDS             complement(35..772)
                     /gene="bamD"
                     /locus_tag="OQQ19_003853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HCS1805302.1"
                     /translation="MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQ
                     DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH
                     PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
                     TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM
                     ENSYRQMQMNAQAEKVAKIIAANSSNT"
     gene            907..1887
                     /gene="rluD"
                     /locus_tag="OQQ19_003854"
     CDS             907..1887
                     /gene="rluD"
                     /locus_tag="OQQ19_003854"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017383977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HCS1805303.1"
                     /translation="MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQR
                     VLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIVINKPRDL
                     VVHPGAGNLDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVE
                     SLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF
                     RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDR
                     QALHATMLRLYHPISGIEMEWHAPIPEDMVELIEVMRADFEEHKDEVDWL"
     gene            1884..2615
                     /gene="pgeF"
                     /locus_tag="OQQ19_003855"
     CDS             1884..2615
                     /gene="pgeF"
                     /locus_tag="OQQ19_003855"
                     /EC_number="1.10.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase"
                     /protein_id="HCS1805304.1"
                     /translation="MSKLIVPQWPLPKGVAACSSTRIGGVSLPPYDSLNLGAHCGDNP
                     EHVEENRKQLFAAGNLPSKPVWLEQVHGKDVLKLTGEPYASKRADASYSNTPGTVCAV
                     MTADCLPVLFCNRAGTEVAAVHAGWRGLCAGVLEETVSCFADKPENILAWLGPAIGPR
                     AFEVGAEVREAFMAVDAKASAAFIQHGDKYLADIYQLARQRLANVGVEQIFGGDRCTY
                     TENETFFSYRRDKTTGRMASFIWLI"
     gene            2745..5318
                     /gene="clpB"
                     /locus_tag="OQQ19_003856"
     CDS             2745..5318
                     /gene="clpB"
                     /locus_tag="OQQ19_003856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002461515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HCS1805305.1"
                     /translation="MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGG
                     SVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRG
                     DNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA
                     LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG
                     LAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF
                     IDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQ
                     KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAID
                     LIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSD
                     KERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPE
                     LEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQEL
                     HHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFD
                     SDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA
                     HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKEL
                     VLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDE
                     ALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAV
                     Q"
BASE COUNT         1391 a         1335 c         1516 g         1349 t
ORIGIN      
        1 ctcaagggct gccgttttgt gtttcaggtt tctgttatgt attgctgctg tttgcggcga
       61 tgattttcgc tactttttca gcttgcgcat tcatctgcat ctgacggtat gaattttcca
      121 tcagtggcag cgcatcacgc gtagcctggg tatccgggta gtcgcgcaac atgccttcta
      181 cgcggttaac gacggcaacc catgcaccac gttctgtata gtactcggca acggagtatt
      241 catatttcgc cagacgatct ttcaggaata ccagacgttt ggttgcatcg gtagtgtact
      301 gactgttcgg atagccgcgc accagtttgg aaaagtcact aaacgcagct cgtgcatgtt
      361 gaggatcgcg atcgctacgg tcaacgccaa agaacccttg cagcgcactg tcatccagcg
      421 ccatattggt caggccacgc atgtacatga cataatcgat attcggatgg gtcgggttaa
      481 ggcgaataaa acgatcgatg gcagcctgtg ctaacggcaa atcggcgttt ttatagtagg
      541 cgtagatgag atccagctgc acctgctgcg aatacggacc aaacggatag cgattatcta
      601 atgcttccag ttgcgttatt gcctgtctcc agttaccgtc ctgcagcttt tgttgtgcag
      661 tcgcgtaaat ttcatttggt ggattatcag gtacttcttc ctttgacccc gagcaacccg
      721 ccaaaaacag gcttagtgtg gcggctgcca ccagatattt catgcgcgtc atgacgtttt
      781 gactttcctc aaaatgtaat acgggagatt ctctgttcct gctcccggtt aagaccagct
      841 acaatagcac actatattaa acggcaaagc cgtaaaaccc caacgataaa cgaagaagca
      901 gtatatatgg cacaacgagt acagctcact gcaacggtgt ccgaaaacca actcggtcaa
      961 cgcttagatc aggctttggc cgaaatgttc ccggattatt cacgttcgcg aataaaagaa
     1021 tggatcctcg accagcgcgt gctggtaaac ggcaaagttt gtgataagcc gaaagaaaaa
     1081 gtattgggtg gcgagcaggt tgccatcaac gctgagattg aagaagaagc gcgttttgaa
     1141 ccgcaggata tcccgctgga tatcgtctat gaagatgaag atatcatcgt cattaataaa
     1201 ccgcgcgacc tggtggtaca tcctggcgcg ggtaacctgg atggcacggt actgaatgcg
     1261 ttgcttcatt attatccgcc cattgccgat gtaccgcgtg cgggcatcgt ccatcgtctg
     1321 gataaagaca ccactggcct gatggttgtg gcaaaaaccg ttccggctca gacgcgttta
     1381 gtcgaatctt tgcaaaggcg tgaaattact cgtgagtatg aagcggtggc aattggtcat
     1441 atgaccgctg gcggtacagt agatgaacca atcagccgcc acccgaccaa acgtactcac
     1501 atggcggtgc atcccatggg caaaccggcg gtcactcact atcgcatcat ggaacacttc
     1561 cgtgtgcaca cgcgtctgcg gttgcgtctg gaaaccggac gtacgcacca gatccgcgtg
     1621 catatggcgc atattaccca tccgctggtg ggcgatccgg tttatggtgg ccgtccgcgt
     1681 ccgccaaaag gtgcttcgga agcgtttatc tccacgctgc gtaagtttga ccgccaggcg
     1741 cttcatgcaa ctatgctgcg tctttatcac ccgatctccg gcatcgaaat ggaatggcat
     1801 gcgcctattc cagaagatat ggtggagttg attgaggtta tgcgcgccga tttcgaagag
     1861 cataaggatg aagtggactg gttatgagta agctgattgt cccgcagtgg ccgctgccaa
     1921 aaggtgttgc ggcctgtagc tctacccgta tcggcggcgt gagcttgcca ccttacgact
     1981 ctctcaacct tggcgctcat tgtggtgata acccggagca cgtagaggag aatcgcaagc
     2041 aactttttgc tgcgggaaat ttgccttcaa aaccggtctg gcttgagcag gtacacggca
     2101 aagatgtgct taagctcact ggcgaacctt atgcctcaaa acgggcggat gcctcttata
     2161 gcaatacgcc cggcacggtt tgcgcagtga tgactgccga ctgcctccct gtgctgtttt
     2221 gcaatcgagc gggaacggaa gtcgccgccg ttcatgctgg ctggcgtgga ctgtgcgcag
     2281 gcgtgctgga agagacggtt tcctgttttg ctgataaacc tgaaaacatt ctcgcctggt
     2341 tagggccggc aattggtcca cgcgcgttcg aagtgggggc ggaggttcgc gaggcgttta
     2401 tggcagtaga cgctaaagca agtgcagctt tcattcagca tggtgataag tatctggcgg
     2461 atatttatca gcttgcccgg cagcgtctgg cgaacgtggg tgttgagcaa attttcggcg
     2521 gcgaccgttg tacatatacg gaaaatgaga ctttcttctc ttatcgtcgc gacaagacca
     2581 ccggtcgtat ggcaagtttc atttggctga tataacctaa agaatcaaga cgattcggta
     2641 cgcgtgattt tcttttcaca ttaatctggt caataacctt gaataattga gggatgacct
     2701 catttaatct ccagtagcaa ctttgatccg ttatgggagg agttatgcgt ctggatcgtc
     2761 ttactaataa attccagctt gctcttgccg atgcccaatc acttgcactc gggcacgaca
     2821 accaattcat cgaaccactt catttaatga gcgccctgct gaatcaggaa gggggttcgg
     2881 ttagtccttt attaacatcc gctggcataa atgctggcca gttgcgcaca gatatcaatc
     2941 aggcattaaa tcgtttaccg caggttgaag gtactggtgg tgatgtccag ccatcacagg
     3001 atctggtgcg cgttcttaat ctttgcgaca agctggcgca aaaacgaggt gataacttta
     3061 tctcgtcaga actgttcgtt ctggcggcac ttgagtctcg cggcacgctg gccgacatcc
     3121 tgaaagcagc aggggcgacc accgccaaca ttactcaagc gattgaacaa atgcgtggag
     3181 gtgaaagcgt gaacgatcaa ggtgctgaag accaacgtca ggctttgaaa aaatatacca
     3241 tcgaccttac cgaacgagcc gaacagggca aactcgatcc ggtgattggt cgtgatgaag
     3301 aaattcgccg taccattcag gtgctgcaac gtcgtactaa aaataacccg gtactgattg
     3361 gtgaacccgg cgtcggtaaa actgccatcg ttgaaggtct ggcgcagcgt attatcaacg
     3421 gcgaagtgcc ggaaggattg aaaggccgcc gcgtactggc gctggatatg ggcgcgctgg
     3481 tggctggggc gaaatatcgc ggtgagtttg aagaacgttt aaaaggcgtg cttaacgatc
     3541 ttgccaaaca ggaaggcaac gtcatcctgt ttatcgacga attacatacc atggtcggcg
     3601 cgggtaaagc cgatggcgca atggacgccg gaaacatgct gaaaccggcg ctggcgcgtg
     3661 gtgaattgca ctgcgtaggt gccacgacgc ttgacgaata tcgccagtac atcgaaaaag
     3721 atgctgcgct ggaacgtcgt ttccagaaag tgtttgttgc cgagccttct gttgaagata
     3781 ccattgcgat tctgcgtggc ctgaaagaac gttacgaatt gcaccaccat gtgcaaatta
     3841 ctgacccggc aattgttgca gcagcgacgt tgtctcatcg ctacattgct gaccgtcagc
     3901 tgccggataa agccatcgac ctgatcgatg aagcagcatc cagcattcgt atgcagattg
     3961 actcaaaacc agaagaactc gaccgactcg atcgtcgtat catccagctc aaactggaac
     4021 aacaggcgtt aatgaaagag tctgatgaag ccagtaaaaa acgcctggat atgctcaacg
     4081 aagaactgag cgacaaagaa cgtcagtact ccgagttaga agaagagtgg aaagcagaaa
     4141 aggcatcgct ttctggtacg cagaccatta aagcggaact ggaacaggcg aaaatcgcta
     4201 ttgaacaggc tcgccgtgtg ggggacctgg cgcggatgtc tgaactgcaa tacggcaaaa
     4261 tcccggaact ggaaaagcaa ctggaagccg caacgcagct cgaaggcaaa actatgcgtc
     4321 tgttgcgtaa taaagtgacc gacgccgaaa ttgctgaagt gctggcgcgt tggacgggga
     4381 ttccggtttc tcgcatgatg gaaagcgagc gcgaaaaact gctgcgtatg gagcaagaac
     4441 tgcaccatcg cgtcattggt cagaacgaag cggttgatgc ggtatctaac gctattcgcc
     4501 gtagccgtgc ggggttggcg gatccaaatc gcccgattgg ttcattcctg ttcctcggcc
     4561 caacgggtgt ggggaaaact gagctttgta aggcgctggc gaactttatg tttgatagcg
     4621 acgaggcgat ggtccgtatc gatatgtccg agtttatgga gaaacactcg gtgtctcgtc
     4681 tggttggtgc gcctccggga tatgtcggtt atgaagaagg tggctacctg accgaagctg
     4741 tgcgtcgtcg tccgtattcc gtcatcctgc tggatgaagt ggaaaaagcg catccggatg
     4801 tcttcaacat tctgttgcag gtactggatg atggtcgtct gactgacggg caggggagaa
     4861 cggtcgactt ccgtaatacg gttgtcatta tgacctctaa cctcggttcc gatttgattc
     4921 aggaacgctt cggtgaactg gattatgcgc acatgaaaga gctggtgctc ggtgtggtaa
     4981 gccataactt ccgtccggaa ttcattaacc gtattgatga agtggtggtc ttccatccgc
     5041 tgggtgaaca gcacattgcc tcgattgcgc agattcagtt gaaacgtctg tacaaacgtc
     5101 tggaagaacg tggttatgaa atccacattt ctgacgaggc gctgaaactg ctgagcgaga
     5161 acggttacga tccagtctat ggtgcacgtc ctttgaaacg tgctatccag cagcagatcg
     5221 aaaacccgct ggcacagcaa atactgtctg gtgaattggt tccgggtaaa gtgattcgcc
     5281 tggaagttaa tgaagaccgg attgtcgctg tccagtaatg ataaaacgag cccttcgggg
     5341 ctcgtttttg tctataagtt agacggaaaa gactatattt aagatgtttt gcctgaaaaa
     5401 tgagcgaacg ataaagtttt tatatttttc gcttgtcagg ccggaataac tccctataat
     5461 gcgccaccac tgacacggaa caacggcaaa cacgccgccg ggtcagcggg gttctcctga
     5521 gaatctcaac agagaaaagc aaaaaaatgc ttgactctgt agcggggaag cgtattatgt
     5581 acaccccgcg c
//
LOCUS       DAJVSY010000210         5529 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.212, whole genome shotgun sequence.
ACCESSION   DAJVSY010000210 DAJVSY010000000
VERSION     DAJVSY010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5529)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5529)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5529
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.212"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            1..1133
                     /locus_tag="OQQ19_003857"
                     /pseudo
     CDS             1..1133
                     /locus_tag="OQQ19_003857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(1173..2387)
                     /gene="ydcO"
                     /locus_tag="OQQ19_003858"
     CDS             complement(1173..2387)
                     /gene="ydcO"
                     /locus_tag="OQQ19_003858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001748359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BenE family transporter YdcO"
                     /protein_id="HCS1805306.1"
                     /translation="MLRCLYAITYEVTMRLFSIPPPTLLAGFLAVLIGYASSAAIIWQ
                     AAIVARATTAQISGWMTALGLAMGVSTLTLTLWYRVPVLTAWSTPGAALLVTGLQGLT
                     LNEAIGVFIVTNALIVLCGITGLFARLMRIIPHSLAAAMLAEILLRFGLQAFASLDGQ
                     FTLCGSMLLVWLATKAVAPRYAVIAAMIIGIVIVIAQGDVVTTDVVFKPVLPTYITPD
                     FSFAHSLSVALPLFLVTVASQNAPGIAAMKAAGYSAPVSPLIVFTGLLALVFSPFGVY
                     SVGIAAITAAICQSPEAHPDKDQRWLAAAVAGIFYLLAGLFGSAITEMMAALPVSWIQ
                     MLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASGLTLVGIGSAFWGLIAGGVCY
                     VVLNLIADRNQY"
     gene            2440..2976
                     /gene="sutR"
                     /locus_tag="OQQ19_003859"
     CDS             2440..2976
                     /gene="sutR"
                     /locus_tag="OQQ19_003859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator SutR"
                     /protein_id="HCS1805307.1"
                     /translation="MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNE
                     SSPTVATLWKIATGLNVPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHF
                     SIQMASGAISESTPHEKGVIEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYR
                     NGGEQTVHFHSLIHYPRS"
     gene            3049..5010
                     /gene="rlhA"
                     /locus_tag="OQQ19_003860"
     CDS             3049..5010
                     /gene="rlhA"
                     /locus_tag="OQQ19_003860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA 5-hydroxycytidine C2501 synthase"
                     /protein_id="HCS1805308.1"
                     /translation="MTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNA
                     SNSLKDIAELVPFAHRYGAKIFVTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMG
                     ILELDIPPIELHASTQCDIRTVEKAKFLSDVGFTQIVLARELNLDQIRAIHQATDATI
                     EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLS
                     MKDNDQTANLGALIDAGVRSFKIEGRYKDMNYVKNITAHYRQMLDAIIEERGDLARAS
                     SGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLPVGEVLKVAKDHLDV
                     AVTEPLANGDGLNVMIKREVIGFRANTVEKTGENQYRVWPNEMPADLHKIRPHHPLNR
                     NLDHNWQQALTKTSSERRVAVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNA
                     EKAMNNLKDGLAKLGQTLYYARDVQINLPGALFVPNSLLNQFRREAADMLDAARLASY
                     QRGSRKPVAEPAPVYPQTHLSFLANVYNQKAREFYHRYGVQLIDAAYEAHEEKGEVPV
                     MITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKN
                     HILKMPLPGSVVASVSPDELLKTLPKRKG"
     gene            complement(5102..5332)
                     /locus_tag="OQQ19_003861"
     CDS             complement(5102..5332)
                     /locus_tag="OQQ19_003861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncJ family protein"
                     /protein_id="HCS1805309.1"
                     /translation="MFTKALSVVLLTCALFSGQLMAGHKGHEFVWVKNVDHQLRHEAD
                     SDELRAVAEESAEGLREHFYWQKSRKPEAGQR"
BASE COUNT         1453 a         1411 c         1397 g         1268 t
ORIGIN      
        1 gcaggcgcat gtcgtttcgt tttcaatcgt gatctggcac gtcagaatga gaatcatgag
       61 gccggtaata aatacatccc ttacgggaaa atggcttcct ggctggttga gtggaaaaat
      121 gccactgaaa cgcaatggct taaagattct ccctcacagc cattgcaaca gtcactgaaa
      181 gaccttgagc gggcttacaa aaacttcttc cggaagcggg ctgcttttcc ccgattcaaa
      241 aagcggggac agaatgatgc attccgctac ccgcaggtta agctcgatca ggaaaacagc
      301 cgtatttttc tgccgaaact gggctggatg cgctaccgga atagccgtca ggtcacgggt
      361 gttgtgaaaa atgtcactgt cagccagtcc tgcggtaagt ggtacatcag tattcagaca
      421 gaaagtgaag tatccactcc ggctcaccct tcagcatcaa tggtcggact ggatgctggc
      481 gtggctaaac tcgccacgct gtcagatggc acagtctttg agcctgtaaa cagttttcag
      541 aaaaaccaga agacgctggc gagacttcag cgacagttaa gccgcaaggt caaattcagc
      601 aacaactggc agaagcagaa acgcaaaata cagcgactgc attcctgtat cgcaaatatc
      661 cgcagggact accttcacaa agtcacaacg gccgtcagca aaaaccacgc aatgatagtc
      721 attgaggatt tgaaggtcag caacatgtca aagtcagcag gggtacggtc agccagccgg
      781 ggcgcaatgt ccgggcaaaa tcaggtttaa accgttcgat actggatcag ggctggtatg
      841 aaatgcaccg ccagcttgag tacaagcagc tctggcgtgg cggtcaggtg cttgctgttc
      901 cgccagcgta tacaagccag cgttgcgcgt actgtggtca tacagcgaaa gagaaccgcc
      961 tgtcacaaag taaattcaga tgccaggtat gtggatatac agcgaacgcc gatgtaaatg
     1021 gcgctcgtaa cattttagcg gcggggcacg ccgttcttgc ctgtggagag atggtgcagt
     1081 caggccgccc gttgaagcag gaacccaccg aaatgattca ggcgacagcc tgaacgtagc
     1141 agggatccac gtctttcagg gcgtgtagga tgtcaatatt ggtttctgtc agcgattaaa
     1201 ttcaacacca cgtaacaaac gcctccggca attaatcccc agaacgcaga accaatcccg
     1261 accagcgtca atccacttgc cgttaccaga aatgccacca ccgccgcgtc gcgctcacgc
     1321 tcattatgca gcgcctgata caaactgccg ccaatggtac tcaacagcgc cagacctgcc
     1381 agcatctgga tccaacttac gggcagggca gccatcatct cggtaatggc actaccaaac
     1441 agacctgcga gcaaatagaa aatgcctgca acggcagctg ccagccaacg ttgatcttta
     1501 tccggatgcg cttccgggct ttggcaaata gccgcggtga ttgccgcaat accgacggaa
     1561 taaacgccga aaggggaaaa aaccagtgcc agcaatccag taaatacaat taatggcgaa
     1621 acaggagccg aatatccagc tgctttcatt gctgcgatac ccggtgcgtt ttgcgatgcc
     1681 accgtcacca gaaaaagggg gagtgcaacg ctcaggctgt gagcaaacga aaaatcaggg
     1741 gtaatataag tggggagaac gggtttaaag acaacatcag ttgtgacaac gtcaccttgc
     1801 gcgatgacga tcacgatccc aataatcatc gcggcaatta ccgcatagcg cggcgcaacg
     1861 gccttggttg ccagccatac cagcaacata cttccacaca acgtaaattg accgtccaga
     1921 ctggcaaacg cctgtaaacc aaagcgtaat aaaatctcgg caagcattgc cgccgcaagc
     1981 gagtgcggaa taatgcgcat cagacgagca aagagtcccg ttatgccgca gaggactatt
     2041 aacgcgttgg tgacaataaa aacgccgatg gcttcgttaa gtgttagtcc ctgcaatccg
     2101 gtgaccaaca aagccgcgcc aggcgttgac catgcggtga gaacaggtac gcgataccat
     2161 aatgtcagag tcagcgtact gacgcccatt gccagcccca gcgccgtcat ccagccagag
     2221 atttgtgcag tggtggctct ggcgacaatc gctgcttgcc agattattgc cgctgaactg
     2281 gcgtagccaa ttaataccgc cagaaacccc gccagtagcg tgggtggagg aatagaaaac
     2341 agacgcatag tcacctcgta cgttatagcg tacaggcacc gtagcatttg tccgttataa
     2401 cgcacaagtg ataaacttcc gttttgccgg aggagtcgca tggaaaatct cgctcgcttt
     2461 ttatccacca cacttaaaca actacgccag cagcgcggct ggagtctttc gcgactggca
     2521 gaagcgacgg gcgtttctaa agcaatgtta gggcagattg agcgtaatga gtccagtccg
     2581 acggtcgcga cattatggaa aattgccacc gggttgaacg taccattttc aacatttatt
     2641 tctccgccgc agtccgctac gccttcagtt tatgatccac aacagcaggc gatggtgatc
     2701 acttcgctgt ttccttatga tccacaactc tgctttgaac acttctcgat tcagatggca
     2761 tctggtgcaa taagcgaatc gacgccccat gagaaggggg taatcgaaca tgtcgtcgtc
     2821 attgatggac aacttgatct gtgcgttgat ggggaatggc agacccttaa ttgtggggaa
     2881 ggcgttcgat ttgctgcaga cgtcacgcat atctatcgta atggtgggga gcaaaccgta
     2941 cattttcatt ccctcatcca ttacccgcgc agttaagcgg gaaaactatt tcgcaacgtc
     3001 gcgcttgtgg ctaaaatagc cgccattttt cagctactgg ataagaatgt gaccgtatct
     3061 tctcatcgac ttgaactgtt aagcccggca cgcgatgccg ccattgcccg cgaagctatt
     3121 ttgcacggtg ccgatgctgt ttatatcggc ggccctggtt ttggtgcccg tcataatgcc
     3181 agtaatagcc tgaaagatat tgccgagctg gtgccgtttg cccatcgtta tggtgcaaaa
     3241 attttcgtca cgcttaacac cattttgcat gatgatgagc tggaacccgc gcaacggctg
     3301 attactgacc tctaccagac cggtgtcgat gcgctgattg ttcaggatat ggggattctg
     3361 gaacttgata ttccgccgat tgaactgcac gccagtacgc agtgcgacat tcgtacagtt
     3421 gaaaaagcga agttcctctc tgatgttggc ttcacgcaga ttgtgctggc gcgagagctg
     3481 aatcttgatc agatccgcgc gattcaccag gctacggacg cgaccattga attctttatt
     3541 catggggcac tgtgcgtggc ctattcgggt cagtgctaca tttctcatgc gcaaacaggg
     3601 cgtagcgcca accgtggcga ttgctcgcag gcgtgccgtt tgccatacac attgaaagac
     3661 gatcaggggc gggtggtttc ctatgaaaaa catctgctgt cgatgaaaga taacgatcag
     3721 actgccaacc tcggcgcgct gattgatgct ggtgtacgct ccttcaagat tgaaggtcgt
     3781 tacaaagata tgaactacgt gaagaatatc accgcccatt atcgccagat gcttgatgcc
     3841 attattgaag aacgtggcga tctggcgcgc gcttcatcag gtcgtactga acatttcttt
     3901 gttccatcga cggaaaagac tttccaccgt ggtagcacag attattttgt gaatgcccgt
     3961 aaaggcgata ttggcgcgtt cgattcgccg aaatttatcg gcctgccggt gggtgaagta
     4021 ttgaaagtgg cgaaagatca tctcgatgtt gccgtcaccg agccactggc aaatggtgat
     4081 ggcctgaacg tgatgattaa acgtgaagtc atcggttttc gtgccaatac ggtcgagaaa
     4141 accggagaaa atcagtaccg cgtctggccc aatgaaatgc cagcagattt gcacaaaatt
     4201 cgtccacatc acccactaaa ccgtaatctt gatcataact ggcagcaggc actgacaaaa
     4261 acctccagcg aacgtcgggt ggcggtagac attgaactgg gcggctggca ggaacaactg
     4321 attctgaccc tcaccagtga agagggtgtc agcatcacgc atacgctgga cgggcagttc
     4381 gacgaagcca ataacgccga aaaagcaatg aacaatctga aggatggtct ggcaaaactg
     4441 gggcaaaccc tctattacgc ccgcgatgtg caaattaatt tgccgggggc gctgtttgta
     4501 ccaaacagtc tgttaaacca gttccgccgt gaagctgctg acatgctgga tgctgcgcgt
     4561 cttgccagtt accagcgcgg cagccgtaaa ccggttgctg agcctgcgcc ggtttatccg
     4621 caaacgcatc tgagtttcct cgcgaacgta tacaaccaga aagcgcgtga attttatcat
     4681 cgctatggtg tgcagctgat tgacgcggcg tatgaggcac atgaagagaa gggcgaagtc
     4741 ccggtgatga tcaccaagca ttgtctgcgc tttgccttta atctgtgccc gaaacaggcg
     4801 aaaggcaata tcaaaagctg gaaggcgacg ccaatgcaac tggttaacgg cgatgaagta
     4861 ttaacgctaa agtttgattg ccgcccatgc gagatgcacg tcattggcaa aatcaaaaat
     4921 cacatactga aaatgccgtt accgggaagc gtagtggcat ccgtaagtcc ggatgagctg
     4981 ctgaaaacat tgcctaagcg aaaagggtaa aacgccagtt ttctggttac tcacaactca
     5041 ttgaatctgc atgatattgc ctgccgggta aggcgtcacg ccgcatccgg catcaaacga
     5101 ctcaacgttg tcccgcttct ggtttgcgcg atttttgcca gtaaaaatgc tcgcgcaaac
     5161 cttccgccga ctcttccgcc acagcacgca attcatcgct gtccgcttca tgacgcagct
     5221 gatgatccac attctttacc cacacaaatt catgtccttt gtgccctgcc atgagttgtc
     5281 ctgagaacag cgcacacgtt aataagacaa ccgataacgc cttcgtaaac atcctgccac
     5341 ctttttctta ccttttgccg ctatgatgcc gatcgtttct tgaggttatt attcagtttt
     5401 gcaaattagc gcaaagaaat tctggaatct tccttcctga ttttgcattg cattctgtcg
     5461 ttgcggcgat ttagtgctat tttcgagcaa attacacaca gaggtaaaca ctaatgttta
     5521 ctttgttga
//
LOCUS       DAJVSY010000211         5510 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.213, whole genome shotgun sequence.
ACCESSION   DAJVSY010000211 DAJVSY010000000
VERSION     DAJVSY010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5510)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5510)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5510
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.213"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..1404
                     /locus_tag="OQQ19_003862"
     CDS             <1..1404
                     /locus_tag="OQQ19_003862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exoribonuclease"
                     /protein_id="HCS1805310.1"
                     /translation="YPGRLQGYINAYLTETDHENPSKETLTATRHTPEKDILEEINRE
                     VVTERETEEEKPQPSDAMAGEQATTETMEPDTTEHCQNAQSLDAQSQVSSANQVKVTA
                     DEVNKIMQAANISQPDADKLLAVSRGEFVEGISDPNDPKWVKGIQTRDSVNQNQHESE
                     RNDQKAEQNSPNALQNEPETKQSEPVAQQEPEKVCTACGQSGGGNYPDCGAVMDDATY
                     QKTFDEENQVEVQENDPEEMEGAEHPHKENAGSAQDHASDSKTGETADPLITVNGHHE
                     ITSTSRTCDHLMIDLETMGKNPDAPIISIGAIFFDPQTGDMGPEFSKTIDLETAGGVI
                     DRDTIKWWLKQSREAQSAIMTDEIPLDDALLQLREFIDENSGEFFVQVWGNGANFDNT
                     ILRRSYERQGIPCPWRYYNDRDVRTIVELGKAIDFDARTAIPFEGERHNALDDARYQA
                     KYVSAIWQKLIPSQADF"
     gene            1463..1666
                     /locus_tag="OQQ19_003863"
     CDS             1463..1666
                     /locus_tag="OQQ19_003863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HCS1805311.1"
                     /translation="MSSLFLTEDELLILTGCKYASHQRKWLMENELPFYTNRSGKPIV
                     SRDLFTCNKTLPPREVEPNFGAI"
     gene            1666..2691
                     /locus_tag="OQQ19_003864"
                     /pseudo
     CDS             1666..2691
                     /locus_tag="OQQ19_003864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005105555.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
     gene            complement(2719..2808)
                     /locus_tag="OQQ19_003865"
     tRNA            complement(2719..2808)
                     /locus_tag="OQQ19_003865"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2772..2774),aa:Ser,seq:cga)
     gene            2902..3699
                     /gene="mtfA"
                     /locus_tag="OQQ19_003866"
     CDS             2902..3699
                     /gene="mtfA"
                     /locus_tag="OQQ19_003866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310801.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DgsA anti-repressor MtfA"
                     /protein_id="HCS1805312.1"
                     /translation="MIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVTLAE
                     RFLQQKRLVPLQGFELDSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDE
                     WEDDIGLVHNQRIVQSGQSWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGD
                     RASGVPFIPLREVAGWEHDLHAAMNNIQEEIELVGENAASIDAYAASDPAECFAVLSE
                     YFFSAPELFAPRFPSLWQRFCQFYQQDPLQRLHHANDTDSFSATNVH"
     gene            3800..3875
                     /locus_tag="OQQ19_003867"
     tRNA            3800..3875
                     /locus_tag="OQQ19_003867"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3833..3835,aa:Asn,seq:gtt)
     gene            4189..5510
                     /locus_tag="OQQ19_003868"
                     /pseudo
     CDS             4189..5510
                     /locus_tag="OQQ19_003868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416485.4"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta domain-containing
                     protein"
BASE COUNT         1592 a         1280 c         1324 g         1314 t
ORIGIN      
        1 tacccgggac gccttcaggg gtatatcaac gcctatttga cggaaactga tcacgagaac
       61 cccagcaagg aaactctcac agctacccgg catacgccgg aaaaagatat cctggaagaa
      121 attaaccgcg aggtggttac tgagcgtgaa acagaagaag aaaaaccaca accatctgac
      181 gcaatggcag gtgaacaggc aacaactgaa acaatggaac cggatacaac tgaacattgc
      241 cagaacgcgc agtcgctgga tgctcagtcg caggtgagtt ccgctaacca agtaaaagtc
      301 accgctgacg aagtaaacaa aattatgcag gcagccaata tcagccagcc tgacgccgat
      361 aagttacttg ctgtatcgcg tggtgaattt gttgagggga ttagcgaccc taatgatccg
      421 aaatgggtca aggggatcca gactcgcgat tctgtgaacc agaaccagca tgaatcggaa
      481 cggaacgacc aaaaagcgga acaaaacagc ccaaatgcgt tacaaaacga gccagaaacg
      541 aaacaatccg aaccagtagc gcaacaggaa ccggaaaaag tctgcaccgc ctgcggtcag
      601 agcggtggcg gcaactaccc tgattgtggc gcggtgatgg acgacgcaac ataccagaaa
      661 acattcgatg aagagaatca ggttgaagtt caggaaaatg atccggagga aatggaaggc
      721 gctgaacatc cacacaagga gaatgctggc agcgctcagg accacgccag cgatagtaaa
      781 actggcgaga cggcagatcc cttaattacg gtgaatggtc atcacgaaat cacatccacc
      841 agcaggacgt gtgaccatct aatgatcgac cttgaaacca tgggaaaaaa tcctgatgcc
      901 ccgatcatct caataggtgc aatatttttc gatccgcaaa ccggagatat gggacccgaa
      961 tttagtaaga ctatcgatct ggaaactgct ggcggagtca ttgatcggga caccattaaa
     1021 tggtggctta agcaatcacg cgaagcgcaa tctgccatta tgaccgatga aatcccgtta
     1081 gatgatgcac tgttacaatt gcgggaattt atcgacgaaa actccggtga attttttgtt
     1141 caggtctggg gaaatggagc caacttcgac aacacgattt tgcgccgttc atacgaacgg
     1201 caggggatcc cctgcccgtg gcgttactac aacgatcgcg atgtacgcac aatcgttgag
     1261 ctggggaaag ccatagactt cgatgccaga acggctattc cattcgaagg tgagcgccat
     1321 aatgcacttg atgacgctcg ttaccaggca aaatacgttt cagctatctg gcaaaaactg
     1381 atcccgagtc aggctgattt ttaatgttca accctaattg ccgctaaccg tatatagtta
     1441 gcggcggtta tgagatatag ctatgagcag cttattttta accgaagatg aattgctaat
     1501 attaacgggc tgcaaatatg caagccacca gcgaaaatgg ttaatggaaa acgagcttcc
     1561 gttctatacc aatcgtagtg gcaaaccgat tgtcagccgg gatctattta cctgcaataa
     1621 aactttacca ccacgcgagg tagagccgaa ttttggtgcg atctgatggg aagacgaagg
     1681 aaaaatcctg agcacgaaaa attacctcca aatgtatacc caaataaata tagttatgta
     1741 tggaaaccaa catccagcga atctgtaaca ctaaccgcca tcaaggatgg tttagctgct
     1801 ttatggaaaa agtatgagga aactgtaaat aatcgcgatc gtgcaatgac attcggtcgc
     1861 ttgtgggaaa aattcctcgc cagcgcctat tacagtgacc tcagtccaag aacacaaaaa
     1921 gattatctgc aacatcaaaa aagttgcttg ccgtattcgg taaggtgccg gcagattcca
     1981 taaaaccaga acacatccgt cgatacatgg acaagagagg ggaacagagt aaaacgcaag
     2041 ccaaccatga agtcccgcgt ttacagttgg gggtatgagc gagggtacgt gaaggctaac
     2101 ccatgtgcag gtgtaagtaa attcaaggcc aaaaaccgcg aacgatatgt aaccgacaaa
     2161 gaataccagg cagtattaag cgttgcacct cttcctgttt ttatcgcaat ggaaattgcc
     2221 tatctgtgtg cagcgagggt ttccgatgtg ttatcgctga aatgggagca gattggaaac
     2281 gacgggatct ttatccagca agggaaaaca ggaaaaaaac agataaaagc atggagtcca
     2341 cgattacagg cggcgatcga aaaagcaaaa cagttaccaa catccgccta tgtaatcagc
     2401 aatcaatacg gcaaccgata tatgtacaaa ggctttaacg aaatgtgggt agaagcaaga
     2461 aatcgcgcag gcaaaatttc aggtatttta accgacttca cctttcatga tctgaaggcg
     2521 aaaggaattt cagactatga aggaagcagt cgggataagc aacttttctc tggtcacaaa
     2581 accgaggggc aagtgctaat ctatgacagg aaggttaaag tttcaccgac acttgatgtc
     2641 ccgttacctg aaaatattcc aagtaattcc acgtgtgatt tttgtcactg acttaatgat
     2701 gtataagtga ttgaattttg gcggagagag ggggatttga acccccggtg gagttgcccc
     2761 cactccggtt ttcgagaccg gtccgttcag ccgctccggc atctctccgt tcagatggtt
     2821 gccatgatgc caggaaattt ggcattttaa cagtccctgt ccgtgcaatt ttgttcaagt
     2881 gacgagtttg cgagcaaaac gatgattaag tggccctgga aagtacaaga atcagcacat
     2941 caaactgccc ttccctggca ggaagcacta tcgatccccc ttttaacgtg tctgacggaa
     3001 caggaacaaa gcaaattagt cactcttgcc gaacgttttt tacagcaaaa gcggcttgtt
     3061 cctttacagg gctttgaact ggattcatta agaagctgcc ggatagcact tctattttgc
     3121 ctacccgttc tggagttagg actggaatgg ctggatggtt ttcatgaagt cttaatttat
     3181 cctgcgccat ttgtggtcga tgatgaatgg gaagacgata tcggtctggt gcataaccaa
     3241 cgtattgttc agtcaggtca gagctggcag caagggccta tcgttttgaa ctggttggat
     3301 atacaagatt cttttgatgc ttctggtttt aacctgatta ttcatgaagt cgctcataag
     3361 ctggacaccc gtaacggcga tcgcgccagc ggagttccct ttattccgtt gcgtgaggtt
     3421 gctggctggg aacacgatct tcatgctgca atgaacaaca ttcaggaaga aatcgaattg
     3481 gttggcgaga atgcggcgag cattgatgct tatgcagcca gcgatcctgc tgaatgtttt
     3541 gccgtacttt ctgaatattt ctttagcgcc ccagaacttt ttgctcctcg tttcccttca
     3601 ttgtggcaac gtttctgcca attttatcaa caagatcctt tgcagagact gcatcacgct
     3661 aatgatacag actcgttttc ggcgacgaat gttcattaat taacaacttt gcatattaat
     3721 taaccaattg aaatgactta tgaaatttag tgttgacaga caaggtaccg ctaagtaata
     3781 tgcgccccgt tcacacgatt cctctgtagt tcagtcggta gaacggcgga ctgttaatcc
     3841 gtatgtcact ggttcgagtc cagtcagagg agccaaattc taaaaattcg cttttttagc
     3901 gcaatgtcac tgaccttagt tgaacattgt tttttaacgg atagcgggtt tttaacatct
     3961 taagcgccct cgacctttat ggttgagggc gttttgctat gaacgccatc accattttcc
     4021 cctcgattat aaaacttgag ttattcagta gtctcccctc ttgcaactca cacccaaaac
     4081 tgcctaacga aaagttatta attttcaatc atattgctat cagtatttac attttttcgc
     4141 tgtgctagaa agggcgcatt tatgttagct cgttcaggga aggtaagcat ggctacgaag
     4201 aagagaagtg gagaagaaat aaatgaccga caaatattat gcgggatggg aattaaacta
     4261 cgccgcttaa ctgcgggtat ctgtctgata actcaacttg cgttccctat ggctgcggca
     4321 gcacaaggtg tggtaaacgc cgcaacccaa caaccagttc ctgcacaaat tgccattgca
     4381 aatgccaata cggtgcccta catccttgga gcgctggaat cggcccaaag cgttgccgaa
     4441 cgtttcggta tttcggtggc tgagttacgc aaactcaacc agtttcgtac gtttgctcga
     4501 ggttttaata atgtccgcca gggtgatgaa ctggatgtcc cggcacaagt tagtgaaaaa
     4561 aaattaaccc cgccgccggg taatagcagt gacaacctcg agcaacagat agccagtact
     4621 tcacagcaaa tcgggtctct gctcgccgaa gatatgaaca gcgagcaagc ggcaaatatg
     4681 gcgcgtggat gggcctcttc tcaggcttca ggcgcaatga cagactggtt aagccgcttc
     4741 ggtaccgcaa gaatcacgct gggcgtggat gaagatttta gcctgaagaa ctcccagttc
     4801 gattttctcc atccgtggta tgaaacgcct gataatctct ttttcagtca gcatactctc
     4861 catcgtactg acgagcgtac gcagattaac aacggcttag gttggcgtca tttcactccc
     4921 acatggatgt caggcatcaa cttctttttc gaccacgatc ttagccgtta ccactcccgc
     4981 gccggcattg gcgcggagta ctggcgcgac tatctaaaat taagcagtaa cggctatttg
     5041 cgactgacca actggcgcag cgcacctgaa ctggacaacg attatgaagc acgcccggcc
     5101 aatggctggg atgtacgcgc agaaagctgg ctacccgcct ggccgcacct tggcggtaaa
     5161 ctggtctatg aacagtatta tggcgatgaa gtggccctgt tcgataaaga cgatcggcaa
     5221 agtaatcctc atgccataac cgctggactt aactataccc ccttcccgct gatgaccttc
     5281 agcgcggagc aacgctaggg taaacagggc gaaaatgaca cccgttttgc cgtcgatttt
     5341 acctggcaac ctggcagcgc aatgcagaaa cagcttgacc cgaatgaagt cgctgcacgg
     5401 cgtagccttg caggcagccg ttatgatctg gtggatcgca acaacaatat cgttctggaa
     5461 tatcgcaaaa aagaactggt tcgcctgacc ctgacagacc ccgtgacagg
//
LOCUS       DAJVSY010000212         5442 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.214, whole genome shotgun sequence.
ACCESSION   DAJVSY010000212 DAJVSY010000000
VERSION     DAJVSY010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5442)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5442)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5442
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.214"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(994..1935)
                     /gene="fabY"
                     /locus_tag="OQQ19_003869"
                     /gene_synonym="yiiD"
     CDS             complement(994..1935)
                     /gene="fabY"
                     /locus_tag="OQQ19_003869"
                     /gene_synonym="yiiD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001666856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid biosynthesis protein FabY"
                     /protein_id="HCS1805313.1"
                     /translation="MYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGSERDAWDAMAH
                     HQMVVDEQGNLVAVGRLYINADNEASIRFMAVHPDVQDKGLGTLMAMTLESVARQEGV
                     KRVTCSAREDAVEFFAKLGFVNQGEITTPTTTPIRHFLMIKPVATLDDILHRGDWCAQ
                     LQQAWYEHIPLSEKMGVRIQQYTGQKFITTMPETGNQNPHHTLFAGSLFSLATLTGWG
                     LIWLMLRERHLGGTIILADAHIRYSKPISGKPHAVADLGALSGDLDRLARGRKARVQM
                     QVEIFGDETPGAVFEGTYIVLPAKPFGPYEEGGNEEE"
     gene            complement(1980..2417)
                     /gene="dtd"
                     /locus_tag="OQQ19_003870"
     CDS             complement(1980..2417)
                     /gene="dtd"
                     /locus_tag="OQQ19_003870"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000560980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HCS1805314.1"
                     /translation="MIALIQRVTRASVTVEGEVTGEIGAGLLVLLGVEKDDDEQKANR
                     LCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSKGASPDRA
                     EALYDYFVERCRQQEMNTQTGRFAADMQVSLVNDGPVTFWLQV"
     gene            complement(2414..3287)
                     /locus_tag="OQQ19_003871"
                     /pseudo
     CDS             complement(2414..3287)
                     /locus_tag="OQQ19_003871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312836.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor BrkB family protein"
     gene            complement(3281..3880)
                     /gene="yihX"
                     /locus_tag="OQQ19_003872"
     CDS             complement(3281..3880)
                     /gene="yihX"
                     /locus_tag="OQQ19_003872"
                     /EC_number="3.1.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312835.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphatase"
                     /protein_id="HCS1805315.1"
                     /translation="MLYIFDLGNVIVDIDFNRVLGAWSDLTRVPLATLKKSFHMGEAF
                     HQHERGEISDEAFAEALCHEMALPLSYEQFSHGWQAVFVALRPEVIAIMHKLREQGHR
                     VVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSD
                     TVFFDDNADNIEGANQLGITSILVKDKTTIPDYFAKVLC"
     gene            complement(4021..4908)
                     /locus_tag="OQQ19_003873"
     CDS             complement(4021..4908)
                     /locus_tag="OQQ19_003873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001309103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase"
                     /protein_id="HCS1805316.1"
                     /translation="MKTERKNEHYLALQQAFDAPWPGPVGELVTLEKGNIHLQIYPHD
                     GARITSLKAFGSEVLRQWQPQRRAFQYGCFPMVPWAGRLGNATLNAGGQCYSLPANKP
                     PHALHGMACYSTWEIIDKTADSLTLRMPLASPWPWQGEVIQTFLLENDALVLQLEVHS
                     YADTFPASAGWHPWFAKKLTPQNTESLQVLFDADWQEEAGSDELPTGNRISPQAGPWD
                     DCFGFYNGVKVKLLWPGKLAMTMISSANSLVVFDKQPDATCINPLTQAPNAINLTPEL
                     VTPDRPLVIETRWQFTPES"
     gene            complement(4898..>5442)
                     /locus_tag="OQQ19_003874"
     CDS             complement(4898..>5442)
                     /locus_tag="OQQ19_003874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001291189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1805317.1"
                     /translation="GIVYISSQLVLSRDIPLTGMLIASAIGIFSCPLVGWLSDRIGQK
                     SLYLSGAGFCVLFAFPFFLLLDSKSTLIIWCSMILGYNLGPTMMFAVQPTLFTRMFGT
                     KVRYTGLSFAYQFSAILGGLSPLIASSLLALGGGKPWYVALFLFAVSVLSFVCVWLIE
                     PTDEQETASYRYIREQSHEN"
BASE COUNT         1474 a         1370 c         1275 g         1323 t
ORIGIN      
        1 tctggggaat atctccccgg cagccttcag ggaaaaatat catcagatgg ctgcttaaaa
       61 aaagaacaaa tggtagtgtc cgctattgcc agtacacctc attctgataa atgaagaaaa
      121 accgtattca tcgccattac caccacctta cctatattac tcattaatgt atgtgcgaaa
      181 attacgccgg aaaatcatta aaaaaaagcg gatttttgca tgttgttttg tttttgcgag
      241 gcgttttcca gaaataataa gagtgttgca gttgtttcat ttattactca aaaatggttt
      301 agttatcgcc caggatgaat tatgggtgct atgaatatat tatattcaga gatatttatt
      361 tgcataatct gaatggtgta gccgaaaaac gtcagcatcc taacagcacc aggatttaag
      421 gtgaaattaa tctttcatca cagaccggtc agtactgcca ccaaccggtc tttacttgct
      481 catcgttata attttgttgg taacagttcg ggaaagttgt ttttctaaat taacaacaga
      541 ataactttct tgtttaatga gattaatatt ggcaaccatt atagcctcct tcccacggtt
      601 taagagcaaa catacaacat aatgattcat aacatacaga gcagtaaatg aatgatactg
      661 acaatgatgc cagcccatta tctttgcata atgtttgtga gctatagatt ttaaaaatat
      721 ttatgaggaa agtatggcac cagaggaggt tttgactatc aaaaatcgct caaacctgaa
      781 ctaagatgat gagttaagca ttatctgcga taattgccac tcagctctac aaataatatt
      841 taaatgctcc tgaacagtga tgtagcaaga cacgtatggt gccaacgaag aataaaaatt
      901 tatagagttc ttattcaata ttaccggcat agacagggaa tgatgtaaat gaccggaatg
      961 aatgagagag gcagcaccgc ccctctccat aagctactct tcttcgttcc cgccctcttc
     1021 atacgggcca aatggcttcg cgggcagaac gatatacgtg ccttcaaaca ctgcacccgg
     1081 cgtctcgtcg ccaaagattt caacttgcat ctgcacccgt gcttttcgtc cgcgcgccag
     1141 acggtcgaga tcgccgctta aggcaccaag gtcggctacc gcatgaggtt taccgctaat
     1201 cggcttgctg tagcggatat gcgcatcggc cagaataatc gttccgccga ggtggcgttc
     1261 gcgcagcatc agccagataa gcccccaacc ggtgagcgtt gccagcgaga ataaactccc
     1321 ggcaaacagc gtatggtgcg gattctgatt accggtttcc ggcatggtgg tgataaattt
     1381 ttgcccggta tattgctgaa tgcgcacgcc cattttttca ctaagcggga tgtgttcgta
     1441 ccacgcctgt tgcagctgcg cgcaccagtc gccgcgatgc aaaatatcat ccagagtggc
     1501 aacaggttta atcatcaaaa aatggcgaat cggcgtggtg gttggtgtgg tgatttctcc
     1561 ctgattaaca aaccccagct tggcgaaaaa ctccaccgcg tcttcacggg cgctacaggt
     1621 cacgcgctta acgccttcct gacgcgccac cgactccagg gtcatcgcca tcaacgtccc
     1681 cagccctttg tcctgcacgt cgggatgaac ggccataaag cgaatggacg cttcattgtc
     1741 ggcattaata tacagtcggc ctaccgccac cagattcccc tgctcgtcga cgaccatctg
     1801 atgatgcgcc atcgcatccc acgcgtcgcg ttccgaacct tttggttgat gcaggggctt
     1861 acgcaacatt tcccagcgaa actgatagta acgctctaac tcttcttctg tttgtggaac
     1921 ccgaaggtga tacatagcga tactctctct tgtttcccgt gacaaccctg gaagctggct
     1981 catacctgca accagaatgt cacggggcca tcattgacca gcgatacctg catatcggca
     2041 gcgaagcgtc ctgtttgcgt gttcatctct tgctggcggc agcgttcgac gaaatagtca
     2101 tataacgcct ctgcgcgatc cggtgatgcg cctttggaga aacttgggcg catcccccgt
     2161 tcggtatctg cggcgagggt aaactgggaa accaccagta cactgccgcc cgcctgttgc
     2221 acgttgagat tcatcttgcc ttcggcatcg ctaaagatgc ggtagccgag cacacgctcg
     2281 cacagacggt ttgctttctg ttcgtcgtca tccttttcga cacccaataa caccaaaagt
     2341 cccgcgccaa tttcgcccgt cacttctccc tccacggtga cgctggcacg ggttacgcgt
     2401 tgaattaatg caatcatggt tcgtcgtctt cttcttgttc agctgcttgt tttagtttgc
     2461 ggtattcccc gagagtgaca gtaatttccg cgccaagcaa gacgatacac catgtccagt
     2521 agacccaaac aaagagaatg gggatcaccg ccagcacacc gtaaatgagc tgatatgacg
     2581 ggaacatggt gatataaagc gcgaaacctt tctttcctgc ttcgaacagg agtgcggcga
     2641 caaacgcgcc gacaatcgcg tcgcggttag gtacgcggat ggtaggaaca atgctgtaca
     2701 gcaaccagaa ggagatccac gacaacagca acggaaaaat acgcagcacg ttgtcgatga
     2761 cagtattgag atcgctcgcc cagcgcaggg agagcaaata ggaactgatc gccagactgg
     2821 cccctgccag cagcggcccc agcgttaaaa tcatccagta cacggcgaac gagtaaattt
     2881 ttggtcgcgc tcgtttactg cgccagatgg tattcaacgc gctatcgatg gagtacatca
     2941 acaataacgc ggtgacgatc agcccgcacg ccccaacggc ggtcatcttg ttggaattgg
     3001 caacaaattg ttcgatatac cgctgaataa catcgccagt agcaggcaga aagttggcaa
     3061 aaataaagtg acgtaactga atgctgacgt cggaaaacat gggaaaagcg gcgaaaagcg
     3121 caaaaacaac ggcaaccagc ggcactaatg agagcaacga ccacataggc aaggttacct
     3181 gccagggttg tcatgttgtc ctcatcaata cgttgccaga gtagttttag ccaggcccat
     3241 agtggacggg tacggtgcct ggctttgtcc tgaatggttt ttagcataac accttcgcga
     3301 aatagtccgg gatggtggtt ttatctttca ccagaatact ggtaatgccc agctgattgg
     3361 ctccttctat attatcggcg ttatcgtcga aaaagaccgt atcgctgggt gaaaaacctt
     3421 ccgcctgcaa aacatgctgg taaattcgtg cttcaggttt gcgcatcccc agatcttgcg
     3481 acagatagat atggtcagca gcatcacgaa tttccgggta ttcttccggc cagaaggtgg
     3541 tatgcaggcg gttggtattg gaaagcacca ccacgcgatg cccctgctca cgcagtttat
     3601 gcatgatggc gatcacttcc gggcgcagcg caacaaacac cgcctgccag ccgtgagaga
     3661 actgctcgta gcttagcggt agagccatct catgacacag cgcctctgcg aacgcttcgt
     3721 cgctaatttc cccacgctca tgctgatgaa acgcctcccc catatgaaaa ctcttcttaa
     3781 gcgtagccag tggaacacgc gttaaatcgc tccaggctcc cagcacacgg ttaaagtcga
     3841 tatcgacaat cacattacct aaatcaaaga tatagagcat ttttgcctcc tttcgcgcca
     3901 caagaaatta actgtagcgg gaaaggatgg gtttggctat gtggcaataa gggtaatctt
     3961 gtgatgctga ttgcgaaaaa gcagagtaat ttcactggct ttttcgcaat agatgaatgg
     4021 ttaagattca ggtgtaaatt gccaacgagt ttcgatgacc agcggcctat ctggtgtcac
     4081 caattccggc gttagattta ttgcgttagg tgcctgagtc agcgggttaa tacaggtggc
     4141 atcgggctgt ttatcaaata ccaccagact gtttgcagaa gagatcatgg tcatcgcgag
     4201 tttaccaggc cacagtaact taaccttcac cccgttataa aaaccaaaac agtcatccca
     4261 gggaccggct tgaggagaga tacgatttcc agttggcagt tcatcactac ccgcttcttc
     4321 ttgccagtcc gcatcaaaaa gcacctgcaa cgattctgta ttttgcggag tcagcttttt
     4381 cgcaaaccac ggatgccagc cagcggaggc cgggaatgta tcggcatatg aatggacttc
     4441 cagttgcaaa accagcgcat cgttctccag caaaaaagtc tgaatcactt ccccttgcca
     4501 gggccacggt gaagccaggg gcatacgtaa agtcagggaa tctgctgttt tgtcgatgat
     4561 ttcccacgtt gagtaacaag ccataccatg caacgcatgt ggtggtttat tggcgggtaa
     4621 agaataacat tgcccaccag cattcagcgt cgcattcccc agtcgccctg cccacggcac
     4681 cattgggaaa cagccatact gaaaagctct gcgctgcggc tgccattggc gtaatacttc
     4741 agaaccaaat gcctttaacg aggttatcct ggcaccatca tgcggataaa tctgcaggtg
     4801 aatattgcct ttttccagcg tcactaactc tcctacaggc ccaggccatg gcgcgtcaaa
     4861 cgcctgttgt agcgccaggt aatgctcgtt ttttcgttca gttttcatga gattgttccc
     4921 tgatgtagcg gtaagaagcg gtttcttgtt catcggtcgg ctcaatcagc cagacgcaaa
     4981 caaaggaaag aactgagaca gcaaataaaa acagagcgac ataccacggt tttcctcccc
     5041 ctagcgccag caaacttgag gcgataaggg ggcttagtcc gccaagaatc gcggaaaatt
     5101 gataagcaaa agaaaggccg gtatatcgta ctttggtacc gaacatgcgg gtgaaaagtg
     5161 ttggctgcac ggcaaacatc atcgtcggac ctaagttgta gccgaggatc atactgcacc
     5221 agatgatgag cgtacttttg ctatccagta ataagaagaa aggaaacgcg aacaggacac
     5281 aaaatcctgc tcccgacaaa tacagacttt tttgacctat acgatctgat aaccatccaa
     5341 ccaatggaca actgaaaata ccgatcgccg aggcaatcaa catacccgtc aggggaatat
     5401 ctcgcgacaa tactaattgg ctggaaatat agacaatacc aa
//
LOCUS       DAJVSY010000213         5439 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.215, whole genome shotgun sequence.
ACCESSION   DAJVSY010000213 DAJVSY010000000
VERSION     DAJVSY010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5439
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.215"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..914
                     /gene="adeQ"
                     /locus_tag="OQQ19_003875"
                     /gene_synonym="yicO"
     CDS             <1..914
                     /gene="adeQ"
                     /locus_tag="OQQ19_003875"
                     /gene_synonym="yicO"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418120.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adenine permease AdeQ"
                     /protein_id="HCS1805318.1"
                     /translation="PLSLRIGITSGIGLFIALMGLKNTGVIVANKDTLVMIGDLSSHG
                     VLLGILGFFIITVLSSRHFHAAVLVSIVVTSCCGLFFGDVHFSGVYSIPPDISGVIGE
                     VDLSGALTLELAGIIFSFMLINLFDSSGTLIGVTDKAGLIDGNGKFPNMNKALYVDSV
                     SSVAGAFIGTSSVTAYIESTSGVAVGGRTGLTAVVVGVMFLLVMFFSPLVAMVPPYAT
                     AGALIFVGVLMTSSLAHVNWDDFTESVPAFITTVMMPFTFSITEGIALGFMSYCIMKV
                     CTGRWRDLNLCVVVVAALFALKIILVD"
     gene            967..1419
                     /locus_tag="OQQ19_003876"
     CDS             967..1419
                     /locus_tag="OQQ19_003876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418119.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1198 domain-containing protein"
                     /protein_id="HCS1805319.1"
                     /translation="MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVES
                     MVDQMGKSAGDEFLRYLHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKAR
                     LAAPITDAQVRLALGFLRETEPEMQDINAFQMRYNAFFQPAEGVHWLH"
     gene            1630..2820
                     /gene="nepI"
                     /locus_tag="OQQ19_003877"
                     /pseudo
     CDS             1630..2820
                     /gene="nepI"
                     /locus_tag="OQQ19_003877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418118.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="purine ribonucleoside efflux pump NepI"
     gene            complement(2861..3154)
                     /locus_tag="OQQ19_003878"
     CDS             complement(2861..3154)
                     /locus_tag="OQQ19_003878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805320.1"
                     /translation="MKPTTLLLIFTFFAMPGIVYAESPFSSLQSAKEKTTVLQDLRKI
                     CTPQASLSDEAWEKLMLSDENNKQHIREAIVAMERNNQSNYWEALGKVECPDM"
     gene            3376..4194
                     /gene="nlpA"
                     /locus_tag="OQQ19_003879"
     CDS             3376..4194
                     /gene="nlpA"
                     /locus_tag="OQQ19_003879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpA"
                     /protein_id="HCS1805321.1"
                     /translation="MKLTTHHLRTGAALLLAGILLAGCDQSSSDAKHIKVGVINGAEQ
                     DVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELDANVFQHRPFLEQDNQAHGY
                     KLVAVGNTFVFPMAGYSKKITTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKE
                     GKGLLHTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDS
                     VFIEDKNSPYVNILVAREDNKNAENVKEFLQSYQSPEVAKAAETIFNGGAVPGW"
     gene            complement(4221..5120)
                     /locus_tag="OQQ19_003880"
     CDS             complement(4221..5120)
                     /locus_tag="OQQ19_003880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005030206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1805322.1"
                     /translation="MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSQMSSQFLTMTRL
                     IFAGLILLTLSFVHGDKIFSIINNHKDAISLLIFSVVGALTVQLTFLLTIEKSNAATA
                     TVLQFLSPTIIVAWFSLVRKSRPGILVFCAILTSLVGTFLLVTHGNPTSLSLSPAALF
                     WGIASAFAAAFYTTYPSTLIARYGTLPVVGWSMLIGGLILLPFYARQGTNFVVNGSLI
                     LAFFYLVVIGTSLTFSLYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGITFTLPDW
                     LGTLLILSSVILISMDSRRRPEK"
     gene            complement(5231..>5439)
                     /locus_tag="OQQ19_003881"
     CDS             complement(5231..>5439)
                     /locus_tag="OQQ19_003881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1805323.1"
                     /translation="GMLYFQDLMPEKIGSATTLYANTSRVGWIIAGSVDGIMVEIWSY
                     HALFWLAIGMLGIAMICLLFIKDI"
BASE COUNT         1299 a         1238 c         1394 g         1508 t
ORIGIN      
        1 ttcccttaag tttacgtatt ggtatcacca gcggaattgg attatttatc gccttaatgg
       61 gattaaaaaa tactggcgtt attgtcgcca ataaagacac gctggtgatg attggcgatt
      121 taagttctca cggcgtgttg ttaggtattt tagggttttt tattataacc gtgttgtcat
      181 cacgtcattt tcatgccgcg gtgctggttt ctatagtggt gacgtcttgc tgtggattat
      241 ttttcggtga tgttcatttt agcggcgtct attccattcc gcctgatatt agcggcgtca
      301 ttggtgaagt agatttgagc ggcgcgttaa cacttgaact cgccggtatc attttctcct
      361 ttatgctgat caacctattt gattcatcag gaacattaat tggtgtaact gataaagcgg
      421 gcttaataga tggtaacggt aaattcccca atatgaataa ggcgctgtat gttgatagcg
      481 tcagttcggt ggcgggtgcg tttatcggca cctcgtctgt tactgcctat attgaaagta
      541 cttctggtgt ggcagtcggt ggccgcacgg ggctgactgc ggttgtggtt ggcgttatgt
      601 tcctgttggt tatgttcttc tcaccgctgg tggcgatggt tcctccttac gcaaccgccg
      661 gagcgttaat ctttgttggc gtgctgatga cttcgagcct ggcgcacgtt aactgggatg
      721 attttaccga atcggtgcct gcgtttatta ccacggtgat gatgcccttt actttctcga
      781 tcaccgaagg gattgcactc ggctttatgt cgtactgcat catgaaagtg tgcaccgggc
      841 gctggcgcga tctgaacctg tgtgtggtgg tggtcgcagc tctgtttgca ctgaagatta
      901 ttctggtgga ttagtaactg gcgagggttt ccagatatca tgagttctga ttacgcagga
      961 gaactcatga tctggataat gctcgccacg ctggcggtag tgtttgtggt tggttttcgg
     1021 gtgctgacat ccggggccag aaaagcgatt cgccgtctca gtgatcggct gaatatcgat
     1081 gtcgtacccg tggagtcgat ggtcgatcaa atgggaaagt cagccggtga cgaattttta
     1141 cgttatttgc atcgcccgga tgagtcgcac ctgcaaaacg ccgcgcaggt gttgctcatc
     1201 tggcaaattg tcattgtcga tggtagcgaa cagaacctgc tgcaatggca tcggatttta
     1261 caaaaagccc gtcttgccgc gccgattacc gatgctcaag tcaggctggc gctgggtttt
     1321 ctgcgcgaaa ccgaacctga aatgcaggat attaatgctt ttcagatgcg ctataacgcg
     1381 ttctttcagc ctgccgaggg cgttcactgg ctgcattaaa accgcttcgt cttatcagcc
     1441 tacagaccgc gcctgacctg tcgggtggat aagacgttca cgccgcatcc ggtaatcttt
     1501 gccctgttcc gtttcgatct taactccagc tcaagcaaca ccgtaaaagt tgcaaaaacg
     1561 ttaaatgcgt cacacatttc aatgttaaag tggtcggctt ttcccctgaa acatgccacg
     1621 ggtaacacca tgagtgaatt tattgccgaa aaccgcggcg cggatgccat cacccgaccg
     1681 aactggtcag ccgttttctc ggtggcgttt tgtgtcgcct gtctgattat cgttgagttt
     1741 ttgcccgtca gtttgttgac gccaatggcc caggatttag gcatttcgga aggggttgcc
     1801 gggcaatcgg tgaccgtgac cgcctttgtg gcaatgtttg ccagtttgtt tattacccag
     1861 acaattcagg ctactgaccg ctgctacgtt gttattttgt ttgccgtttt gctgacgctc
     1921 tcctgcttgc tggtttcctt tgctaactca ttcagtttgc ttttaatcgg tcgtgcctgt
     1981 ctggggctgg cgctgggcgg gttctgggcg atgtcggcgt cgctgaccat gcgtctggtg
     2041 ccgccgcgta cggtgccgaa ggcgctgtcg gtgatcttcg gcgcggtttc tattgcgctg
     2101 gtgattgccg cgccgttggg cagtttttta ggcgagctta tcggttggcg caatgtcttt
     2161 aatgcggcgg cggtgatggg cgtgctgtgt attttctgga ttatcaaatc attgccttca
     2221 ctgccaggcg aaccctcgca tcagaaacaa aatactttcc gcttattaca acgtccgggt
     2281 gtgatggcag ggatgatcgc catcttcatg tctttcgccg ggcagtttgc tttcttcacg
     2341 tatattcgcc cggtgtatat gaacctggcg ggattcggcg tggatggctt aacgctggtg
     2401 ctgttgagtt ttggtatcgc cagctttatt ggtacgtcgc tttcgtcgtt cattcttaaa
     2461 cgttcggtaa aactggcctt agcaggcgcg ccgtgaatac tggctgtgag tgcgttggta
     2521 ctgacgttgt ggggaagcga taaaatcgtt gctaccggcg tggcgattat ctgggggcta
     2581 acttttgcat tggttcccgt cggctggtca acgtggatca cccgctcgct ggccgatcag
     2641 gcagaaaaag ccgggtctat tcaggtggcg gttattcagc ttgctaatac ctgtggcgcg
     2701 gcaatcggcg gttatgcgct ggataatatt ggtctgactt cgccgttgat gttgtccggc
     2761 acattgatgt tgctgactgc attgttggtt actgcaaagg tgaaaatgaa gaaatcctga
     2821 tatcaggtaa agaagcgttg gtcagtagtt gttgctgttc ttacatatcc gggcattcta
     2881 ccttacccaa cgcttcccaa taattgctct gattattacg ttccatcgcc acgatggcct
     2941 cgcgtatatg ttgtttattg ttttcatctg acaacattaa cttttcccac gcttcatctg
     3001 ataatgacgc ctgtggcgtg caaattttac gtaaatcttg taataccgtg gttttctctt
     3061 ttgcggactg cagtgagcta aaaggcgact cggcgtatac gatgcctggc atagcgaaaa
     3121 aagtgaaaat aagcagtagt gtcgttggtt tcatggattc aaccttttac aaatgtgtat
     3181 cgaatgaagc ataagtgtag tttgctttca tcgctctcat cattctgtac gaaacgcgct
     3241 tgcgtggtca gtaagaagtg ccagacttta tattccactt ttattccttt ttattcttat
     3301 cgatagcgtt tcgtttttta aaccgcagcg accttaccgc tatagtcagg taatcattaa
     3361 taaaaggata aaaaaatgaa actgacaaca catcatctac ggacaggggc cgcattattg
     3421 ctggccggaa ttctgctggc aggttgcgac cagagtagca gcgatgcaaa acacattaaa
     3481 gttggcgtta taaatggcgc agaacaagat gtcgcggaag tcgctaaaaa ggtggcaaaa
     3541 gagaaatatg gcctcgatgt tgaactggta ggatttagcg gttcgttgct accgaacgat
     3601 gcgacaaatc atggcgaact tgatgcgaat gtcttccagc atcgaccctt tcttgaacaa
     3661 gataatcagg cgcatggtta taaactggta gcggtgggaa atacgtttgt cttccctatg
     3721 gcgggttatt ccaaaaaaat cacaaccgtg gcgcaaataa aagaaggcgc gacagtggcg
     3781 atccccaacg acccgaccaa ccttggtcgc gcacttttac tgttgcaaaa agagaagcta
     3841 attactctga aagagggaaa agggttatta cataccgcgc tggatataac cgataatcct
     3901 cgtcatttgc agattatgga actcgagggg gcgcagcttc cgcgcgtact ggatgatccc
     3961 aaagttgatg tagcgattat cagcaccact tacattcagc agacagggct ttctccggtg
     4021 cacgacagcg tatttattga agataagaat tcgccgtatg tgaatatttt ggtggcacgg
     4081 gaagataata agaatgcaga aaacgtgaag gaatttctgc aatcttatca atcacccgaa
     4141 gtcgctaaag cggcagaaac catttttaac ggtggcgcgg tgcctggctg gtaattctca
     4201 ctcatgccgc gccggacgat ttatttttct ggccggcgac gggaatccat tgaaatcaaa
     4261 atcaccgatg acagaatcag cagcgttccc agccagtccg gtaatgtgaa cgtgatcccc
     4321 agcaacagca aagagagtag cgcgctactt aatggttctg cacagctcaa aatgctggct
     4381 tttggaccgc caattaattg tgctcctttc aggtacagac taaatgtcag ggacgtacca
     4441 atgaccacca aataaaaaaa cgccagaatc aaactgccgt taacgacaaa gtttgttcct
     4501 tgtctggcat aaaaaggcaa cagaatcaga ccgccaatca gcatactcca gccgacgact
     4561 ggtaacgtgc catagcgggc aattagcgtt gagggatagg tggtatagaa tgcagcagca
     4621 aatgccgagg caatgcccca gaacaacgcg gcaggagaga gcgataatga cgtcggatta
     4681 ccgtgtgtca ccaataaaaa agtcccgacc agcgatgtca aaatagcgca gaaaaccaga
     4741 atgcccgggc gcgatttacg caccagtgag aaccaggcga cgataatcgt cggtgagagg
     4801 aattgcagca ccgttgccgt ggctgcgttc gatttttcga tggttagcaa aaaagtgagc
     4861 tgtacagtta gcgcgccaac cacggaaaaa atcagcaggc taatggcatc tttatgattg
     4921 ttaataatag aaaagatttt atcgccatga acaaatgaca gcgtcagtag aatcaaaccg
     4981 gcgaatatca aacgcgtcat agtcaaaaac tgcgacgaca tctggctttg ctccatgatg
     5041 tattgcgcgc agacccctga acttccccac aacacggcgg caatcagaac gttcagcatc
     5101 ccctttctgg tggaacccat ttttccctct gcatactgtt ttgtcgttta tgtatgcagg
     5161 catgatagca aaaatggcga ggatggctct gtttgcgcca cgccgatttt tcttagccca
     5221 gactggtgag ctaaatatct ttaataaaca gcaggcaaat catcgcaata cccaacatcc
     5281 ctatcgccag ccagaacaac gcatggtagc tccagatttc aaccataatt ccgtcaacag
     5341 agccggcgat aatccagccg acgcgtgaag tatttgcata taacgttgtc gcagagccta
     5401 ttttttcagg cattaagtcc tgaaaataaa gcatgccga
//
LOCUS       DAJVSY010000214         5333 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.216, whole genome shotgun sequence.
ACCESSION   DAJVSY010000214 DAJVSY010000000
VERSION     DAJVSY010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5333
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.216"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            285..626
                     /gene="raiA"
                     /locus_tag="OQQ19_003882"
     CDS             285..626
                     /gene="raiA"
                     /locus_tag="OQQ19_003882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HCS1805324.1"
                     /translation="MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE
                     PQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK
                     DANFVEEVEEE"
     misc_feature    729..854
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01859"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Phe leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF01859"
     gene            730..777
                     /gene="pheL"
                     /locus_tag="OQQ19_003883"
     CDS             730..777
                     /gene="pheL"
                     /locus_tag="OQQ19_003883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pheA operon leader peptide PheL"
                     /protein_id="HCS1805325.1"
                     /translation="MKHTPFFFAFFFTFP"
     gene            877..2037
                     /gene="pheA"
                     /locus_tag="OQQ19_003884"
     CDS             877..2037
                     /gene="pheA"
                     /locus_tag="OQQ19_003884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydratase"
                     /protein_id="HCS1805326.1"
                     /translation="MTSENPLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHR
                     PVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNKINPH
                     SARIAFLGPKGSYSHLAARQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIEN
                     TSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLSTINTVYSHPQPFQQCSK
                     FLNRYPHWKIEYTESTSAAMEKVAQAKSPHVAALGSEAGGTLYGLQVLERIEANQQQN
                     FTRFVVLARKAINVSDQVPAKTTLLMATGQQAGALVEALLVLRNHNLIMTRLESRPIH
                     GNPWEEMFYLDIQANLESAEMQKALKELGEITRSMKVLGCYPSENVVPVDPT"
     gene            complement(2080..3201)
                     /gene="tyrA"
                     /locus_tag="OQQ19_003885"
     CDS             complement(2080..3201)
                     /gene="tyrA"
                     /locus_tag="OQQ19_003885"
                     /EC_number="1.3.1.12"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydrogenase"
                     /protein_id="HCS1805327.1"
                     /translation="MVAELTALRDQIDEVDKALLNLLAKRLELVAEVGEVKSRFGLPI
                     YVPEREASMLASRRAEAEALGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVV
                     IVGGGGQMGRLFEKMLTLSGYQVRILEQHDWDRAADIVADAGMVIVSVPIHVTEQVIG
                     KLPPLPKDCILVDLASVKNGPLQAMLAAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGR
                     KPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQ
                     LLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSERNLALIKRYYKRFGEAIELLKQG
                     DKQAFIDSFRKVEHWFGDYAQRFQSESRVLLRQANDNRQ"
     gene            complement(3212..4282)
                     /gene="aroF"
                     /locus_tag="OQQ19_003886"
     CDS             complement(3212..4282)
                     /gene="aroF"
                     /locus_tag="OQQ19_003886"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroF"
                     /protein_id="HCS1805328.1"
                     /translation="MQKDALNNVHITDEQVLMTPEQLKAAFPLSLQQEAQIADSRKTI
                     SDIIAGRDPRLLVVCGPCSIHDLETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTT
                     VGWKGLINDPHMDGSFDVEAGLQIARKLLLELVNMGLPLATEALDPNSPQYLGDLFSW
                     SAIGARTTESQTHREMASGLSMPVGFKNGTDGSLATAINAMRAAAQPHRFVGINQAGQ
                     VALLQTQGNPDGHVILRGGKAPNYSPADVAQCEKEMEQAGLRPSLMVDCSHGNSNKDY
                     RRQPAVAESVVAQIKDGNRSIIGLMIESNIHEGNQSSEQPRSEMKYGVSVTDACISWE
                     MTDALLREIHQDLNGQLTARVA"
     gene            4490..4855
                     /locus_tag="OQQ19_003887"
     CDS             4490..4855
                     /locus_tag="OQQ19_003887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2799 domain-containing protein"
                     /protein_id="HCS1805329.1"
                     /translation="MMKKFIAPLLALLVSGCQIDPYTHAPTLTSTDWYDVGMEDAISG
                     SAIKDDDAFGDSQADRGLYLKGYAEGQKKTCQTDFTYARGLSGKSFPASCNNVESASQ
                     LHEVWQKGADENASTIRLN"
     gene            5005..>5333
                     /locus_tag="OQQ19_003888"
     CDS             5005..>5333
                     /locus_tag="OQQ19_003888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfiR family protein"
                     /protein_id="HCS1805330.1"
                     /translation="MRFSHRLFLLLILLLTGAPILAQEPSDVAKNVRMMVSGIVSYTR
                     WPALSGPPKLCIFSSSRFSTALQENAATSLPYLPVIIHTQQEAMISGCNGFYFGNESP
                     TFQMELT"
BASE COUNT         1458 a         1353 c         1200 g         1322 t
ORIGIN      
        1 aaaaagagcc agtcagttgc ttaactgact ggcattacag cccttgagct gccgtttttt
       61 tattctgtta gttgtgaaac tgaagcgatt tagtcactat cgatctcatc aaatatggct
      121 cgctttgaga tattcctcaa gtaaaaaaac acctcttcct gcgatttctc acaaaaaaga
      181 ttcgttgaca aaaagtgaca aaattatgag attcccatca cacattttga catcaggaac
      241 ggtatgctga attcaccaag acgggaagac aagaggtaaa atttatgaca atgaacatta
      301 ccagcaaaca aatggaaatt actccggcca tccgccaaca tgtcgcagac cgtctcgcca
      361 aactggaaaa atggcaaaca catctgatta atccacatat cattctgtcc aaagagccac
      421 aagggtttgt tgctgacgcc acaatcaata cacctaacgg cgttctggtt gccagtggta
      481 aacatgaaga tatgtacact gcaattaacg aattgatcaa caagctggaa cggcagctca
      541 ataaactgca gcacaaaggc gaagcacgtc gtgccgcaac atcggtgaaa gacgccaact
      601 tcgtcgaaga agttgaagaa gagtagtcct ttatattgag tgtatcgcca acgcgccttc
      661 gggcgcgttt tttgttgaca gcgtgaaaac agtacgggta ctgtactaaa gtcacttaag
      721 gaaacaaaca tgaaacacac accgtttttc ttcgcattct tttttacctt cccctgaatg
      781 ggaggcgttt cgtcgtgtga aacagaatgc gaagacgaac aataaggcct cccaaaccgg
      841 ggggcctttt ttattgataa caaaaaaggc aacactatga catcggaaaa tccattactg
      901 gcgctgcgag agaaaatcag cgcgctggat gaaaaattat tagcattact ggcagagcgg
      961 cgcgaactgg ccgtcgaggt gggaaaagcc aaactgctct cgcatcgccc ggtacgagat
     1021 attgatcgtg aacgcgattt actggaaaga ttaattacgc tcggtaaagc gcaccatctg
     1081 gacgcccatt acattactcg cctgttccag ctcatcattg aagattccgt attaactcag
     1141 caggctttgc tccagcaaca tctcaataaa attaatccgc actcagcacg catcgctttt
     1201 ctcggcccca aaggttctta ttcccatctt gcggcgcgcc agtatgctgc ccgtcacttt
     1261 gagcaattca ttgaaagtgg ctgcgccaaa tttgccgata tttttaatca ggtggaaacc
     1321 ggccaggccg actatgccgt cgtaccgatt gaaaatacca gctccggtgc cataaacgac
     1381 gtttacgatc tgctgcaaca taccagcttg tcgattgttg gcgagatgac gttaactatc
     1441 gaccattgtt tgttggtctc cggcacgact gatttatcca ccattaatac ggtctacagc
     1501 catccgcagc cattccagca atgcagcaaa ttccttaatc gttatcctca ctggaagatt
     1561 gaatataccg aaagtacgtc tgcggcaatg gaaaaggttg cacaggcaaa atcaccgcat
     1621 gttgctgcgt tgggaagcga agctggcggc actttgtacg gtttgcaggt actggagcgt
     1681 attgaagcga atcagcaaca aaacttcacc cgatttgtgg tgttggcacg taaagccatt
     1741 aacgtgtctg accaggttcc ggcgaaaacg acgttgttaa tggcgaccgg gcaacaagcc
     1801 ggtgcgctgg ttgaagcgtt gctggtgctg cgcaaccaca atctgattat gacccgtctg
     1861 gaatcacgcc cgattcacgg taatccatgg gaagagatgt tttatctgga tattcaggcc
     1921 aatcttgaat cagcggaaat gcaaaaagca ttgaaagagt taggtgaaat tacccgttca
     1981 atgaaggtat tgggctgtta cccaagtgag aacgtagtgc ctgttgatcc aacctgatga
     2041 aaaggtgccg gatgatgtga atcatccggc actggattat tactggcggt tgtcattcgc
     2101 ctgacgcaat aacacgcggc tttcactctg aaaacgctgt gcgtaatcgc cgaaccagtg
     2161 ctccaccttg cggaaactgt caataaacgc ctgcttatcg ccctgcttca gcaactcaat
     2221 cgcctcgccg aaacgcttat agtaacgttt gattaacgcc agattacgct ctgacgacat
     2281 aataatgtcg gcataaagct gcggatcctg agcaaacagt cgcccgacca tcgccagctc
     2341 aaggcggtaa atcggcgaag agagcgccag aagttgctca agctgaacat tttcttctgc
     2401 cagatgcagc ccataagcaa aagtagcaaa gtggcgcaga gcctgaataa acgccatatt
     2461 ctgatcgtgc tcgacagcgc taatacgatg cagccgagcg ccccagacct gaatttgctc
     2521 cagaaaccat tggtatgctt ccggcttacg tccatcacac cagaccacaa cttgctttgc
     2581 caggctaccg ctgtccgggc cgaacatcgg gtgtaacccc agtaccgggc catcgtgcgc
     2641 cgccagcatg gcctgtaatg gtccattttt cactgatgcc agatcaacca gaatacaatc
     2701 tttcggtaaa ggcggtaatt tgccgataac ttgctcagta acgtggattg gcacactaac
     2761 aatcaccatt ccggcatcgg caacaatatc agccgctcga tcccagtcat gttgctccag
     2821 aatccgcacc tgataacccg agagtgtcag catcttctcg aacaggcgtc ccatctgacc
     2881 gccaccgccg acgataacca ccggacgcag tgacggacaa agtgttttaa atcctttgtc
     2941 gttttcactg gagtaagatt cacgcatcac ccgacgcaaa acatcctcaa tcagatctgg
     3001 cggtaccccc agagcttccg cctctgcacg acgcgaggcc aacatagatg cctcgcgctc
     3061 cggaacataa ataggcagtc caaagcggct tttcacctcg cccacttcag caaccagttc
     3121 cagacgcttc gctaataaat tcagcagcgc tttatcgact tcatcaattt gatcgcgtaa
     3181 tgcggtcaat tcagcaacca taataaacct cttaagccac gcgagccgtc agctgcccgt
     3241 tcagatcctg atgaatttca cgcagcaagg catcggtcat ttcccagcta atgcaggcat
     3301 cggttacgga tacaccgtat ttcatttcac tgcgcggttg ctcagaagac tgattgccct
     3361 cgtggatatt actttcgatc atcagaccaa taattgagcg attgccatct ttgatttgag
     3421 caaccacgga ttctgccacc gcaggctgac ggcgataatc tttattggaa ttaccgtggc
     3481 tgcaatctac catcagagac gggcgcagtc ccgcctgttc catctctttt tcacattgcg
     3541 caacatccgc agggctatag ttcggcgctt taccaccgcg caggatgaca tgcccgtccg
     3601 gattcccctg agtttgtagc aacgcaacct gccctgcctg gttaatgcca acaaaacggt
     3661 gcggctgggc ggcggcgcgc atagcgttaa ttgctgttgc cagactgccg tcggtgccgt
     3721 ttttaaaacc aaccggcatg gaaagcccgg aggccatttc acggtgagtt tgcgattccg
     3781 ttgtacgagc accaattgct gaccagctaa acagatcgcc caggtattgc gggctattcg
     3841 gatctaacgc ttccgtcgcc agtggcagtc ccatattcac cagctcaagc agcaatttac
     3901 gcgcgatctg cagcccggct tctacatcaa aagagccatc catatgggga tcgttaatta
     3961 accctttcca gccgacagtg gtacggggtt tttcaaaata gacgcgcatt accagataga
     4021 ggctatcgct gacctctgcg gcaagggctt taaatcgacg agcatattcc agagcagttt
     4081 ccagatcatg aatggaacaa ggaccacaaa ctaccagcag acgaggatcg cgcccggcga
     4141 taatatctga aatggtttta cgcgagtcag caatctgggc ttcttgttgc aggctcaatg
     4201 gaaaagcggc cttcagttgt tccggagtca ttaaaacctg ttcgtcggta atatgtacgt
     4261 tattcagcgc gtctttttgc atgatggcga tcctgtttat gctcgtttgc gatagttgat
     4321 cctcagcgag gatgacgtaa cgataacaca taaagtaaag ttttcaatcc atatttcgta
     4381 cgcttttctt tacacgaaca atttactcgc gctttgatgc ttatttcgta caaataaatt
     4441 tacaccccct ttaaaaacaa tccgctatgc tttgaaaaag gagaaagaaa tgatgaaaaa
     4501 gtttatcgcc cccttattgg ctttactggt tagcggatgt cagattgatc cttatactca
     4561 cgcgccaacc ttgaccagca ccgactggta tgatgtcggt atggaagatg cgatatcggg
     4621 cagcgccata aaagatgacg atgcatttgg cgattcacag gcggatcgcg gtctatacct
     4681 taaaggatat gccgaaggac aaaagaaaac ttgccagacc gattttactt atgcccgggg
     4741 actttccggt aaaagctttc ctgccagctg taacaatgtt gaaagtgcca gccaactgca
     4801 tgaagtatgg caaaaagggg ctgatgaaaa tgccagcaca atacgattaa attaattaaa
     4861 accccacaaa taaattaaac ataagatttt actcattgtg ttttatttct cacattgatg
     4921 acgatcgcat gaaaaaatga tattttaatg agcattctga aaaaatatcg atgcatttcg
     4981 agcgaagaag gtggggatcc ctgaatgcgt ttttctcacc gactgttctt acttctgatt
     5041 ctcctgctga cgggagcacc aatactcgct caggagcctt ctgacgttgc gaaaaacgtg
     5101 cgtatgatgg tttccggtat tgtcagttac acccgctggc ctgcgctatc agggccacca
     5161 aagttatgta tcttttcatc ttcacgtttt agtaccgccc tacaagagaa tgccgcgaca
     5221 tctttgcctt atctgcctgt catcattcac actcaacaag aggcgatgat ttcaggctgc
     5281 aatggttttt attttggcaa cgagtcaccg acattccaga tggaattaac cga
//
LOCUS       DAJVSY010000215         5208 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.217, whole genome shotgun sequence.
ACCESSION   DAJVSY010000215 DAJVSY010000000
VERSION     DAJVSY010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5208)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5208)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5208
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.217"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..117
                     /locus_tag="OQQ19_003889"
     CDS             <1..117
                     /locus_tag="OQQ19_003889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3829 domain-containing protein"
                     /protein_id="HCS1805331.1"
                     /translation="DWDKEQLQDANSSWMVEDSFPRALREYNEMVDDYNSLR"
     gene            complement(167..1915)
                     /locus_tag="OQQ19_003890"
     CDS             complement(167..1915)
                     /locus_tag="OQQ19_003890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative frv operon regulatory protein"
                     /protein_id="HCS1805332.1"
                     /translation="MLNERQLKIVDLLEQQPRTPGELAQQTGVSGRTILRDIDYLNFT
                     LNGKARISASGSAGYQLEIFERRSFFQLLQKHDNDYRLLALLLLNTFTPRAQLASALN
                     LPETWVAERLPRLKQRYERACCLASRPGLGHFIDETEEKRVILLANLLRKDPFLIPLA
                     GVTRDNLQHLSTACDNQHRWPLMQGDYLSSLILAIYALRNQLTDEWPQYPGDEIKQIV
                     EQSGMFLGDNAVRTLTGLIEKQHQQAQVISADHVLGLLQRVPDIASLNIIDTQLVENI
                     TGHLLRCLAAPVWIAEHRQSSMNNLKAAWPAAFDMSLHFITLLREQLDIPLFDNDLIG
                     LYFACALERHQNERQPIILLSDQNAIATINQLAIERDVLNCRVIIARSLSELVAIREE
                     IEPLLIINNSHYLLEDAVNNYITVKNIITAAGIEQIKHFLATAFIRQQPERFFSAPGS
                     FHYSNVRGESWQHITRQICAQLVAQHHITADEAQRIIAREGEGENLIVNRLAIPHCWS
                     EQERRFRGFFITLAQPVEVNNEVINHVLIACAAADARHELKIFSYLASILCQHPAEVI
                     AGLTGYEAFMELLHKG"
     gene            complement(1915..2985)
                     /locus_tag="OQQ19_003891"
     CDS             complement(1915..2985)
                     /locus_tag="OQQ19_003891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709702.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HCS1805333.1"
                     /translation="MNIELLQQLCEASAVSGDEQEVRDILINTLEPCVNEITFDGLGS
                     FVARKGNKGPKVAVVGHMDEVGFMVTHIDESGFLRFTTIGGWWNQSMLNHRVTIRTHK
                     GVKIPGVIGSVAPHALTEKQRQRPLSFDEMFIDIGANSRDEVEKRGVAMGDFISPEAN
                     FACWGEDKVVGKALDNRIGCAMMAELLQTVNNPEITLYGVGSVEEEVGLRGAQTSAEH
                     IKPDVVIVLDTAVAGDVPGIDNIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAH
                     NDLPLQFSTMKTGATDGGRYNVMGGGRPVVALCLPTRYLHANSGMISKADYDALLTLI
                     RDFLTTLTAEKVNAFSQFRQMD"
     gene            complement(2975..4426)
                     /locus_tag="OQQ19_003892"
     CDS             complement(2975..4426)
                     /locus_tag="OQQ19_003892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose-like transporter subunit IIBC"
                     /protein_id="HCS1805334.1"
                     /translation="MESSLRIVAITNCPAGIAHTYMVAEALEQKARSLGHTIKVETQG
                     SSGVENRLSSEEIAAADYVILATGRGLSGDDRARFTGKKVYEIAISQALKNIDQIFSE
                     LPTNSQLFAADSGVKLGKQEMQSGSVMSHLMAGISAALPFVIGGGILVALANMLVQFG
                     LPYTDMSKGAPSFTWVVESIGYLGFTFMIPIMGAYIASSIADKPAFAPAFLVCYLAND
                     KALLGTQSGAGFLGAVVLGLAIGYFVFWFRKVRLGKALQPLLGSMLIPFVTLLVFGVL
                     TYYVIGPVMSDLMGGLLHFLNTIPPSMKFAAAFLVGAMLAFDMGGPINKTAWFFCFSL
                     LEKHIYDWYAIVGVVALMPPVAAGLATFIAPKLFTRQEKEAASSAIVVGATVATEPAI
                     PYALAAPLPMITANTLAGGITGVLVIAFGIKRLAPGLGIFDPLIGLMSPVGSFYLVLA
                     IGLALNISFIIVLKGLWLRRKAKAAQQELVHEH"
     gene            complement(4437..4883)
                     /locus_tag="OQQ19_003893"
     CDS             complement(4437..4883)
                     /locus_tag="OQQ19_003893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIA"
                     /protein_id="HCS1805335.1"
                     /translation="MAALTASCIDLNIQGNGAYSVLKQLATIALQNGFITDSHQFLQT
                     LLLREKMHSTGFGSGVAVPHGKSACVKQPFVLFARKAQAIDWKASDGEDVNCWICLGV
                     PQSGEEDQVKIIGTLCRKIIHKEFIHQLQQGDTDQVLALLNQTLSS"
BASE COUNT         1318 a         1341 c         1316 g         1233 t
ORIGIN      
        1 gactgggata aagagcaact tcaggacgca aactcaagct ggatggtcga agactctttc
       61 ccgagagcat tacgcgagta caacgaaatg gttgatgact ataatagcct gcgttaaacg
      121 tttttgatga taaatgcagt gtcggatgcg gcgcatctga cacagttcac cccttgtgaa
      181 gtaactccat aaatgcctca tatcctgtta acccggcaat aacctctgcc ggatgctgac
      241 acaatatgct tgccagatag ctaaatattt ttagctcatg acgcgcatcg gcggcggcgc
      301 aggcgatcaa gacatggtta atgacttcgt tattcacctc aactggttgg gcgagggtaa
      361 taaaaaatcc acgaaaacgt cgctcctgtt cgctccagca atgtgggatg gcgaggcgat
      421 taacaatcag gttttcacct tcgccttcgc gggcgatgat gcgttgtgct tcatcggcgg
      481 taatatggtg ttgtgcgact aattgcgcac aaatttgccg ggtaatatgt tgccagcttt
      541 caccgcgtac attcgaataa tgaaaacttc cgggggcaga gaaaaaacgc tccggttgct
      601 ggcgaataaa tgccgtcgcc agaaaatgtt ttatttgttc gataccggca gccgtaatga
      661 tattttttac ggtgatgtaa ttatttaccg cgtcttccag taaataatgg ctattgttaa
      721 tgatcaataa cggctcaatc tcttcgcgaa tggcaacaag ttcgcttaag ctacgggcaa
      781 taattacccg acaatttaaa acatcgcgct caatggcgag ctgattaata gtggcaatcg
      841 cgttctggtc cgagagcaaa atgatcggct ggcgttcgtt ttgatgccgc tccagcgcac
      901 aggcaaaata caaaccgatc agatcgttgt cgaaaagggg aatatcgagc tgttcacgca
      961 gtagcgtaat aaagtgcaga ctcatatcaa aggccgcagg ccaggctgct ttcaggttat
     1021 tcatgctact ttggcggtgc tcagcaatcc acaccggtgc ggcaaggcaa cgtaataaat
     1081 gcccggtaat attctcaacc aactgcgtat caataatatt caatgacgcg atgtctggca
     1141 ccctttgcag caaccccagc acatgatcgg ctgaaattac ctgcgcttgc tgatgctgtt
     1201 tctctatcaa acctgtcagg gttcttacag cgttatcacc aagaaacatg ccgctttgtt
     1261 caacgatttg ttttatctcg tcaccgggat attgcggcca ctcatcggtc agttgattac
     1321 gcagggcgta aatcgccaga atcaggctgg agagataatc accctgcatg agcggccagc
     1381 ggtgttggtt gtcgcaggcc gtggataaat gctgaaggtt gtctcgtgtt acgcccgcca
     1441 gcggaattaa aaacggatct ttgcgcagca agttcgccag caagataacg cgcttctctt
     1501 ctgtctcatc aatgaaatgg cccaaaccgg ggcggctggc caggcaacaa gcgcgttcat
     1561 aacgctgttt taaccggggc agacgctctg cgacccacgt ttctggcaaa ttaagcgccg
     1621 aggcgagttg cgcacgggga gtaaaggtat tcagtaataa cagtgccagc agccgatagt
     1681 cgttatcgtg cttttgcagc aactgaaaaa agctgcggcg ctcgaagatt tccagctgat
     1741 agcccgcact accactggcg gaaatgcggg ctttgccgtt aagggtaaag ttgagatagt
     1801 caatatcacg caggatggtc ctgcctgaaa cgccagtctg ttgcgccagc tcaccaggcg
     1861 tgcgcggctg ttgctccagc agatcgacaa tctttaactg gcgttcgttt agcattaatc
     1921 catctgacgg aactggctaa acgcgttgac tttctccgcg gttaaggtgg tcagaaaatc
     1981 ccgtatcaac gtgagcagag catcgtaatc ggcttttgaa atcataccgc tgttagcgtg
     2041 cagatagcgg gttggcaggc acagcgcaac aaccggacgc ccgccgccca tcacgttgta
     2101 gcgcccgcca tccgtcgcac cggttttcat ggtggaaaat tgcagcggta aatcgttatg
     2161 tgcggcacag ctttttaacg ctgctaccag tttctggttg gggaagtagc gcttgtcaaa
     2221 cagcatcagc cccggcccct ggcccagttt cagcgggtat ttaatgttat caatgcccgg
     2281 aacatcgcct gcgacagcgg tatccagcac gatcactaca tccggtttaa tgtgttccgc
     2341 cgaggtttgt gccccgcgta gcccaacttc ttcttccacg ctgccgacgc catacagcgt
     2401 aatttcggga ttattcaccg tctgcaatag ttcagccatc attgcgcagc cgatgcggtt
     2461 atccagcgcc ttgccgacca ctttatcttc gccccagcag gcaaaattgg cttccgggct
     2521 aataaaatcg cccatcgcca caccgcgttt ttccacctca tcgcgactgt ttgcgccaat
     2581 atcaatgaac atctcatcaa atgacagcgg ccgttgcctt tgcttttccg ttaacgcatg
     2641 aggcgcgacg gaaccaatca caccagggat tttcactccc ttgtgtgtgc gtatggttac
     2701 ccggtggttg agcatcgact gattccacca gccaccaatg gtggtgaaac gcagaaaacc
     2761 gctctcgtcg atgtgggtga ccataaagcc gacttcatcc atatgcccga caacggcaac
     2821 ttttggacct ttattcccct tacgggcaac aaagctgccc agaccatcaa aggtgatctc
     2881 attaacgcaa ggttccagcg tgtttatcag aatgtcgcga acttcctgtt catcgccgct
     2941 gacggcgctg gcttcgcaca actgttgcag taactcaatg ttcatggaca agctcctgtt
     3001 gcgcggcttt cgctttgcgg cgtaaccaca atcctttcag gacgataatg aatgaaatgt
     3061 tcagcgcgag gccaatcgcc agcaccagat aaaacgaacc caccggcgac atcaggccga
     3121 tcagcgggtc aaagataccc aaaccaggtg ccagacgttt gattccgaaa gcgatcacca
     3181 gcacgccggt aatgccaccc gccagcgtat tggcggtaat catcggcaac ggagctgcca
     3241 gagcgtaagg tatagccggt tcggttgcga ctgtggcacc gaccacaatg gcactactgg
     3301 cagcctcttt ttcctgtcgg gtaaacagtt tgggcgcaat gaacgtcgca agacccgccg
     3361 caacgggcgg catcaacgcg acaacgccga cgatggcgta ccagtcataa atgtgttttt
     3421 ccagcagtga gaagcagaag aaccaggcgg ttttattgat ggggccgccc atatcgaacg
     3481 ccagcatcgc accgaccaga aacgctgctg caaacttcat tgatggagga atggtattca
     3541 ggaagtggag cagcccgccc atgaggtcgg acatcaccgg cccgataacg tagtaagtga
     3601 gcacgccgaa aaccagcaga gtaacgaacg ggatcagcat tgaaccgagc agcggttgta
     3661 atgctttgcc aaggcgcact ttgcggaacc agaagacgaa atagccaatc gccagcccca
     3721 gcaccaccgc gccgaggaat cccgcacccg actgggtgcc gagcagcgct ttgtcgttcg
     3781 ccagatagca aaccagaaac gccggagcga aagccggttt atcggcaatc gacgaggcaa
     3841 tataagcgcc catgatgggg atcataaagg tgaagccaag gtaaccgatg gattcaacta
     3901 cccaggtaaa cgacggcgcg cctttcgaca tatcggtata cggcaaaccg aactgcacca
     3961 gcatgttggc aagcgccacc aggataccac cgccgatgac aaacggcagc gccgcagaga
     4021 tgcccgccat caggtggctc atcacgctgc cgctttgcat ttcctgtttg ccaagcttca
     4081 cgccactatc tgcggcaaaa agctgcgagt ttgtcggtaa ttcgctgaaa atctggtcga
     4141 tatttttcaa cgcctgggag atggcaatct cataaacttt cttcccggta aaccgcgcgc
     4201 gatcatcacc gctcaggcca cgcccggtag cgagaatgac gtaatcggca gcggcaatct
     4261 cttcgctgga taagcggttt tcaacgccac tggacccttg agtttccact tttatggtat
     4321 ggccgagaga acgggctttc tgttccaggg cttccgccac catgtaggtg tgagcgatcc
     4381 cggcggggca gttggtgatc gcgacaatac gtaaggatga ctccatcgcc acttccttat
     4441 gagctgaggg tttgatttaa caaggcaagc acttggtcgg tatcgccctg ttgcagttga
     4501 tgaataaatt ccttgtgaat aattttgcga cacagtgtgc cgatgatttt gacctgatcc
     4561 tcttcgccgc tttgcggcac gccgaggcag atccagcaat tgacgtcttc gccatcgctg
     4621 gctttccagt caatagcctg cgctttgcgg gcgaataata cgaacggttg tttaacgcag
     4681 gcgcttttac cgtgcggcac ggcgacaccg gaaccaaatc cagtagagtg cattttttcg
     4741 cgcagcagca gggtttgcag gaactggtgt gagtcggtga taaaaccgtt ttgtaacgct
     4801 attgtcgcca actgcttcag aacggaataa gcgccattgc cctgaatatt caggtcaata
     4861 cagcttgcag taagagctgc cattaatcgg actccataaa atatatttta atcaattgta
     4921 atggtggagc gattaagtga tgagaggcga tatgtcggta aacaatgaca atttgagaca
     4981 gagtgaaagg tcagatttgc ggagtaatgc acataatggt tatttaaata aaccacatga
     5041 atcattaatg ggttattcat tatttttgtg atttactcac aatgtatcag ggaaatataa
     5101 cttaccggga gatgtaatat gtttaatttt tcaaatcgaa atttaaaata ttgtgccgga
     5161 ggcatctccg gcacattggg caattacggc aggtaaaaca cttcttgc
//
LOCUS       DAJVSY010000216         4960 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.218, whole genome shotgun sequence.
ACCESSION   DAJVSY010000216 DAJVSY010000000
VERSION     DAJVSY010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4960
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.218"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..247)
                     /locus_tag="OQQ19_003894"
     CDS             complement(<1..247)
                     /locus_tag="OQQ19_003894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3029 family protein"
                     /protein_id="HCS1805336.1"
                     /translation="MPTSHENALQQRCQQIVTSPVLSPEQKRHFLALEAENNLPYPQL
                     PAEARRALDEGVICDMFEGHAPYKPRYVLPDYARFLAN"
     gene            505..1284
                     /gene="deoC"
                     /locus_tag="OQQ19_003895"
     CDS             505..1284
                     /gene="deoC"
                     /locus_tag="OQQ19_003895"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005097947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HCS1805337.1"
                     /translation="MTDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQTKTPVGNTA
                     AICIYPRFIPIARKTLKEQGTPEIRIATVTNFPHGNDDIEIALAETRAAIAYGADEVD
                     VVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIK
                     AGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAI
                     ADELFGADWADARHYRFGASSLLASLLKALGHGDGKSASSY"
     gene            1411..2733
                     /gene="deoA"
                     /locus_tag="OQQ19_003896"
     CDS             1411..2733
                     /gene="deoA"
                     /locus_tag="OQQ19_003896"
                     /EC_number="2.4.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313368.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine phosphorylase"
                     /protein_id="HCS1805338.1"
                     /translation="MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAM
                     TIFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMV
                     AACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSL
                     APADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSE
                     ALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVT
                     MALCVEMLISGKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDFVENYAKYL
                     PTAMLTKAVYADTEGFVSEMDARALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQ
                     VDGQRPLAVIHAKDENSWQEAAKAVKAAIKLADKAPESTPTVYRRISE"
     gene            2785..4008
                     /gene="deoB"
                     /locus_tag="OQQ19_003897"
     CDS             2785..4008
                     /gene="deoB"
                     /locus_tag="OQQ19_003897"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HCS1805339.1"
                     /translation="MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEAD
                     NGRKGPLNLPNLTRLGLAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGH
                     WEIAGVPVLFEWGYFSDHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEH
                     MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIG
                     DKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKAT
                     GLDALFDATIKEMKEAGDNTIVFTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMS
                     LLRDDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLA
                     KYFGTSDMEYGKAMF"
     gene            4088..4807
                     /gene="deoD"
                     /locus_tag="OQQ19_003898"
     CDS             4088..4807
                     /gene="deoD"
                     /locus_tag="OQQ19_003898"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HCS1805340.1"
                     /translation="MATPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVR
                     GMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLR
                     DVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALGIDARVGNLFSADLF
                     YSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAER
                     QTTFNDMIKIALESVLLGDKE"
BASE COUNT         1194 a         1263 c         1364 g         1139 t
ORIGIN      
        1 cgttcgccag aaaacgggcg taatcgggta agacatagcg cggtttgtac ggcgcatgac
       61 cttcaaacat atcgcagatt acaccctcat ccagcgcgcg gcgggcttcg gcaggaagct
      121 gcggataagg cagattgttt tctgcttcca gagccagaaa atggcgcttc tgctccgggc
      181 taagcactgg gctggtgaca atttgctggc aacgttgttg cagtgcattt tcatgagaag
      241 tgggcatctt cttttccttt tatgccgaag gtgatgcgcc attgtaagaa gtttcgtgat
      301 gttcactttg atcctgatgc gtttgccacc actgacgcat tcatttgaaa gtgaattatt
      361 tgaaccagat cgcattacag tgatgcaaac ttgtaagtag attaccttaa ttgtgatgta
      421 tatcgaagtg tgttgcggag tagatgttag aatactaaca aactcgcaag gtgaatttta
      481 ttggcgacaa gccaggagaa tgaaatgact gatctgaaag caagcagcct gcgtgcactg
      541 aaattgatgg acctgaccac cctgaatgac gacgacaccg acgagaaagt aattgctctg
      601 tgtcatcaga ccaaaactcc ggtcggcaat accgccgcta tctgtatcta tcctcgcttt
      661 atcccgattg ctcgcaaaac gctgaaagag cagggcaccc cggaaatccg aatcgctacg
      721 gtaaccaact tcccacacgg taacgatgac atcgaaatcg cgctggcaga aacccgtgcg
      781 gcaatcgcct acggtgctga tgaagttgac gttgtgttcc cgtaccgcgc gctgatggcg
      841 ggtaacgagc aggttggttt tgacctggtg aaagcctgta aagaggcttg cgcggcagcg
      901 aatgtactgc tgaaagtgat catcgaaacc ggcgaactga aagacgaagc gctgatccgt
      961 aaagcgtctg aaatctccat caaagcgggt gctgacttca tcaaaacctc taccggtaaa
     1021 gtggcagtga acgcgacgcc ggaaagcgcg cgcatcatga tggaagtgat ccgtgatatg
     1081 ggcgtagaaa aaaccgttgg tttcaaaccg gcgggcggcg tgcgtactgc ggaagatgcg
     1141 cagaaatatc tcgccatcgc agatgaactg ttcggtgctg actgggcaga tgcgcgtcac
     1201 taccgctttg gtgcttccag cctgctggca agcctgttga aagcgctggg ccacggtgac
     1261 ggtaagagcg ccagcagcta ctaagcaaga tgctttacgc ctgatgcgct gcgcttatca
     1321 ggcctacgag acgtatctac ccgtaggccg gataaggcgt agacgcatcc ggcaaaagcc
     1381 gcctcatact cttttcctcg ggaggttacc ttgtttctcg cacaagaaat tattcgtaaa
     1441 aaacgtgatg gtcatgcgct gagcgatgaa gaaattcgtt tctttatcaa cggcattcgc
     1501 gacaacacta tctccgaagg gcagattgcc gccctcgcga tgaccatttt cttccacgat
     1561 atgacaatgc ctgagcgtgt ctcgctgacc atggcgatgc gagattcagg aaccgttctc
     1621 gactggaaaa gcctgcatct gaatggcccg attgttgata aacattccac cggcggcgtc
     1681 ggcgatgtca cttcgctgat gttggggccg atggtcgcag cctgcggcgg ctatattccg
     1741 atgatctccg gtcgcggcct cggtcatact ggcggtacgc tcgacaaact ggaatccatc
     1801 cctggcttcg acattttccc ggatgacaac cgtttccgcg aaattattaa agacgtcggc
     1861 gtggcgatta tcggtcagac cagctcactg gctccggcgg ataaacgttt ctacgcgacc
     1921 cgtgatatta ccgcaaccgt ggactccatc ccgctgatca ctgcctcgat cctggcgaag
     1981 aaactggcgg aaggtctgga tgcgctggtg atggacgtga aagtgggtag cggcgcgttt
     2041 atgccgacct acgaactctc tgaagccctt gccgaagcga ttgttggcgt ggctaacggc
     2101 gctggcgtgc gcaccaccgc gctgctcacc gacatgaatc aggtactggc ctccagtgca
     2161 ggtaacgcgg ttgaagttcg tgaagcggtg cagttcctga cgggtgaata tcgtaacccg
     2221 cgtctgtttg atgtcacgat ggcgctgtgc gtggagatgc tgatctccgg caaactggcg
     2281 aaagatgacg ccgaagcgcg cgcgaaattg caggcggtgc tggacaacgg taaagcggca
     2341 gaagtctttg gtcgtatggt agcggcacaa aaaggcccga ccgacttcgt tgagaactac
     2401 gcgaagtatc tgccgacagc gatgctgacg aaagcagtct atgctgatac cgaaggtttt
     2461 gtcagtgaaa tggatgcccg cgcgctgggg atggcagtgg ttgcaatggg cggcggtcgt
     2521 cgtcaggcat ctgacaccat cgattacagc gtcggcttta ctgatatggc gcgtctgggc
     2581 gaccaagtag acggtcagcg tccgctggcg gttatccacg cgaaagacga aaacagctgg
     2641 caggaagcgg cgaaagcggt gaaagcggca attaaacttg ccgataaagc accggaaagc
     2701 acaccaactg tctatcgccg tatcagcgaa taacggtata ctgatctgat catttaaatt
     2761 tgaagcactg agtacggaga acatatgaaa cgtgcattta ttatggtgct ggactcattc
     2821 ggcatcggcg ctacagaaga tgcagaacgc tttggtgacg tcggggctga caccctgggt
     2881 catatcgcag aagcttgtgc caaaggcgaa gctgataacg gtcgtaaagg cccgctcaat
     2941 ctgccaaatc tgacccgtct ggggctggcg aaagcacacg aaggttctac cggtttcatt
     3001 ccggcgggaa tggacggcaa cgctgaagtt atcggcgcgt acgcatgggc gcacgaaatg
     3061 tcatccggta aagatacccc gtctggtcac tgggaaatcg ccggtgtccc ggttctgttt
     3121 gagtggggat acttctccga tcacgaaaac agcttcccgc aagagctgct ggataaactg
     3181 gtcgaacgcg ctaatctgcc gggttacctc ggtaactgcc actcttccgg tacggtcatt
     3241 ctggatcagc tgggcgaaga gcacatgaaa accggcaagc cgattttcta tacctccgct
     3301 gactccgtgt tccagattgc ctgccacgaa gaaacctttg gcctggataa actctacgaa
     3361 ctgtgcgaaa tcgcccgtga agagctgacc aacggcggct acaacatcgg tcgtgttatc
     3421 gctcgtccgt ttatcggtga caaagccggt aacttccagc gtaccggtaa ccgtcacgac
     3481 ctggctgttg agccgccagc accgaccgtg ctgcagaaac tggttgatga aaaacacggt
     3541 caggtggttt ctgtcggtaa aattgcagac atctacgcca actgcggtat caccaagaaa
     3601 gtgaaagcaa ctggcctgga cgcgctgttt gacgccacca tcaaagagat gaaagaagcg
     3661 ggtgataaca ccatcgtctt caccaacttc gttgacttcg actcttcctg gggccaccgt
     3721 cgcgacgtcg ccggttatgc tgcgggtctg gagctgttcg accgccgtct gccggagctg
     3781 atgtctttgc tgcgcgatga cgacatcctg atcctcactg ctgaccacgg ttgtgatccg
     3841 acctggaccg gtactgacca cacgcgtgaa cacattccgg tactggttta cggcccgaaa
     3901 gtaaaaccgg gttcactggg tcaccgtgaa accttcgcgg atatcggcca gactctggca
     3961 aaatattttg gtacttctga tatggaatat ggcaaagcca tgttctgata atgggtgcgg
     4021 cttgatgccc tcaccccggc cctctcccac agggagaggg tgaaaacatg ttgataagga
     4081 taaaacaatg gctaccccac acattaatgc agaaatgggc gatttcgctg acgtagtttt
     4141 gatgccaggc gacccgctgc gtgcgaagta tattgctgaa actttccttg aagatgcccg
     4201 tgaagtgaac aacgttcgcg gtatgctggg cttcaccggt acttacaaag gccgcaaaat
     4261 ttccgtaatg ggtcacggta tgggtatccc gtcctgctcc atctacacca aagaactgat
     4321 caccgatttc ggcgtgaaga aaattatccg cgtgggttcc tgtggcgcag ttctgccgca
     4381 cgtaaaactg cgcgacgtcg ttatcggtat gggtgcctgc accgattcca aagttaaccg
     4441 catccgtttt aaagatcatg actttgccgc tatcgctgac tttgacatgg tgcgtaacgc
     4501 ggtagacgcg gctaaagcac tgggcattga tgctcgcgtt ggtaacctgt tctccgctga
     4561 cctgttctac tctccggacg gcgaaatgtt cgacgtgatg gaaaaatacg gcatcctcgg
     4621 cgtggaaatg gaagcggctg gtatctacgg cgtcgctgca gaatttggcg cgaaagccct
     4681 gaccatctgt accgtgtctg accacatccg cactcacgag cagaccactg ccgctgagcg
     4741 tcagaccacc ttcaacgaca tgatcaaaat cgcactggaa tccgttctgc tgggcgataa
     4801 agagtaattg tgtttcgctg aaaggcgatt gtcgtgtgaa gccggagtgg gagactgctc
     4861 cggcttttta gtatctattc atcaatagca actgatttat agatttacta ttatttttca
     4921 tatggataga aaataaaatc tattcaagta tctattcacg
//
LOCUS       DAJVSY010000217         4960 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.219, whole genome shotgun sequence.
ACCESSION   DAJVSY010000217 DAJVSY010000000
VERSION     DAJVSY010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4960
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.219"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            390..1364
                     /gene="hemB"
                     /locus_tag="OQQ19_003899"
     CDS             390..1364
                     /gene="hemB"
                     /locus_tag="OQQ19_003899"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308450.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HCS1805341.1"
                     /translation="MTDLIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDY
                     KAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDGLVARM
                     SRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGAD
                     FIAPSAAMDGQVQAIRQALDAAGFKDTAIMSYSTKFASSFYGPFREAAGSALKGDRKS
                     YQMNPMNRREAIRESLLDEAQGADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEY
                     AMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLAEKKILR"
     gene            complement(1470..2321)
                     /gene="tauD"
                     /locus_tag="OQQ19_003900"
     CDS             complement(1470..2321)
                     /gene="tauD"
                     /locus_tag="OQQ19_003900"
                     /EC_number="1.14.11.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine dioxygenase"
                     /protein_id="HCS1805342.1"
                     /translation="MSERLSITPLGPYIGAQISGADLTRPLSDNQFEQLYHAVLRHQV
                     VFLRDQAITPQQQRALAQRFGELHIHPVYPHAEGVDEIIVLDTHNDNPPDNDNWHTDV
                     TFIETPPAGAILAAKELPSTGGDTLWTSGITAYEALSVPFRQLLSGLRAEHDFRKSFP
                     EYKYRKTEEEHQRWREAVAKNPPLLHPVVRTHPVSGKQALFVNEGFTTRIVDVSEKES
                     EALLGFLFAHITKPEFQVRWRWQPNDIAIWDNCVTQHYANADYLPQRRIMHRVTILGD
                     KPFYRAG"
     gene            complement(2336..3142)
                     /gene="tauC"
                     /locus_tag="OQQ19_003901"
     CDS             complement(2336..3142)
                     /gene="tauC"
                     /locus_tag="OQQ19_003901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine ABC transporter permease TauC"
                     /protein_id="HCS1805343.1"
                     /translation="MSVLINEKLHSRRLKWRWPLSRQVTLSIGTLAVLLTVWWTVAAL
                     QLISPLFLPPQQVLAKLLTIAGPQGFMDATLWQHLAASLTRIVLALLAAVVIGIPVGI
                     AMGLSPTVRGILDPVIELYRPVSPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSA
                     LAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAEL
                     IAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTP"
     gene            complement(3139..3906)
                     /gene="tauB"
                     /locus_tag="OQQ19_003902"
     CDS             complement(3139..3906)
                     /gene="tauB"
                     /locus_tag="OQQ19_003902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine ABC transporter ATP-binding subunit"
                     /protein_id="HCS1805344.1"
                     /translation="MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLL
                     NLIAGFVPYQHGSIQLAGKRIEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGIEK
                     MQRLEIAHQVLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD
                     AFTRDQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSSGPGRVLERLPLNFA
                     RRFVAGESSRSIKSDPQFIAMREYVLSRVFEQREAFS"
     gene            complement(3919..4881)
                     /gene="tauA"
                     /locus_tag="OQQ19_003903"
     CDS             complement(3919..4881)
                     /gene="tauA"
                     /locus_tag="OQQ19_003903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414899.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1805345.1"
                     /translation="MAISSRNTLLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQAGNT
                     FAKESGASVDWRKFDSGASIVRALASGDVQIGNLGSSPLAVAASQQVPIEVFLLASKL
                     GNSEALVVKKTISKPEDLIGKRIAVPFISTTHYSLLAALKHWGIKLGQVEIVNLQPPA
                     IIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHP
                     EVVKAFAKSAIDAQQPYIANPDAWLKQPENISKLARLSGVPEGDVPGLVKGNTYLTPQ
                     QQTAELTGPVNKVIIDTAQFLKEQGKVPAVANDYSQYVTSRFVQ"
BASE COUNT         1182 a         1416 c         1243 g         1119 t
ORIGIN      
        1 tggacatata taatttatgg agaaaaacac gcatcaaatt gataaaagga cgatatttca
       61 acatgttgca gataatgtta tttttgatac atacgcgtta taaatatcaa aaacacaaac
      121 cagataaata tcttatcaat atacaacaaa gtttgaatta ttcaatttat agcagcacaa
      181 ccaaacgcaa aaaaaaataa taaccaagag ctataaataa agattaaaaa tattttcagt
      241 gaatatgaac ttattgctat ttctattaca aagatgtcct ggtctctctt tcattctctt
      301 cttgtcaaca tcacgacaac tttcgtaaaa cactcctgcc ccgcttcagg tatactgtgc
      361 accttaattc cacaaacatc aggcagacca tgacagactt aatccaacgc cctcgtcgcc
      421 tgcgcaaatc tcctgcgctg cgcgctatgt ttgaagagac aacacttagc cttaacgacc
      481 tggtgttgcc gatctttgtt gaagaagaaa ttgacgacta caaagccgtt gaagccatgc
      541 caggcgtgat gcgcattcca gagaaacatc tggcacgcga aattgaacgc atcgccaacg
      601 ccggtattcg ttccgtgatg actttcggca tctctcacca taccgatgaa accggcagcg
      661 acgcctggcg ggaagatgga ctggtggcgc gtatgtcgcg catctgcaag cagactgtgc
      721 cagaaatgat cgtcatgtca gacacttgtt tctgtgaata cacttctcac ggtcactgcg
      781 gtgtgctgtg cgagcatggc gtcgacaacg acgcgactct ggaaaattta ggcaagcaag
      841 ccgtggttgc agctgctgca ggcgcagact tcatcgcccc ttccgccgcg atggacggcc
      901 aggtacaggc gattcgtcag gcgctggacg ctgcaggctt taaagatacg gcgattatgt
      961 cgtattcgac caagttcgcc tcttcctttt atggcccgtt ccgtgaagct gccggaagcg
     1021 cattaaaagg cgaccgcaaa agctatcaga tgaaccctat gaaccgtcgc gaggcgattc
     1081 gtgagtcact gctggatgaa gcccagggcg cagactgcct gatggttaaa cctgctggag
     1141 cgtacctcga catcgtgcgt gagctgcgtg aacgtactga attgccgatt ggcgcgtatc
     1201 aggtgagcgg tgagtacgcg atgattaagt tcgccgcgct ggcgggtgct atagatgaag
     1261 agaaagtcgt gctcgaaagc ttaggttcaa ttaagcgtgc gggtgcggat ctgattttca
     1321 gctactttgc gctggatttg gctgagaaga agattctgcg ttaatttttt tcctctcaga
     1381 aagggggagt taacctgttg aaagtacggt gaacgccccc tcaccctaac cctctcccca
     1441 agggggcgag ggaaccgtcc gcactcgtat caccccgccc gataaaacgg tttatcccca
     1501 agaatcgtca cccgatgcat aatccgccgc tgtggcaggt aatcggcatt ggcatagtgc
     1561 tgagtcacgc agttatccca aatcgcaata tcattcggtt gccagcgcca acgcacctga
     1621 aactccggtt tagtgatatg ggcgaataaa aagcctaaca aggcttcgct ctctttctcg
     1681 ctgacatcga caattcgcgt agtaaagcct tcattcacaa acagcgcctg tttaccgctc
     1741 accggatgcg ttcgcaccac cggatgtagc aacggaggat ttttcgcgac cgcctcgcgc
     1801 cagcgttgat gttcctcctc ggttttgcgg tatttgtatt ccgggaacga tttacggaaa
     1861 tcatgctccg cacgcagccc gctcagcagc tggcggaagg gaacagagag cgcctcatag
     1921 gccgtaatac cgctggtcca gagcgtatca ccgccggtcg aaggtaattc tttagctgcc
     1981 agaatcgccc ctgcgggtgg cgtttcaata aatgtcacat cggtatgcca gttgtcgtta
     2041 tctggcggat tatcgttatg ggtatccagc acgatgatct cgtcaacccc ttcggcatga
     2101 gggtaaacag ggtgaatatg cagttcgcca aaacgctggg ccagcgcgcg ttgctgctgc
     2161 ggcgtaatgg cttgatcgcg cagaaacacc acctgatggc gcagcaccgc atggtaaagc
     2221 tgttcaaact gattatcgct taacgggcgc gtcaggtcgg cacccgaaat ttgtgcgccg
     2281 atatacggcc ccagcggggt aatgctcaga cgttcactca ttgtacttct ccatgctagg
     2341 gcgtcagacg gcgctgtaac gcgcgcaaac ccagttctaa aagaaaggcg ataatcgcaa
     2401 tcaccgcgat tcccgccagc accacgtcag tcgcgagaaa ttcacccgct gactgaacca
     2461 taaatcctaa accgcgcgtc gcggcaatca gctccgccgc taccagcgta gaccagccca
     2521 cacccagacc aatgcgtaat ccggtgagga tttccggcag cgcgccgggc aaaatgacaa
     2581 accacagcac ctgcgcacgg ctggcaccca gcgactgggc ggcacgaatg cgaacctgct
     2641 gcgcgctttt cacccccgcc agcgccgaca tcgccaccgg tgcaaaaatc gctaaataga
     2701 tcagtaagat cttcgaggtt tcaccaatac caaaccagat caccatcagc ggcaaataag
     2761 ccagcggcga caccggacga taaagttcga ttaccggatc cagaatgccg cgcaccgtcg
     2821 ggcttagccc catggcgatc ccgaccggaa taccgatcac caccgccgcg agtagcgcca
     2881 gcacaatgcg cgtcaggctg gctgccagat gctgccacag cgtggcgtcc ataaatccct
     2941 gcggtccggc aatggtgagc agttttgcca gtacttgttg cggcggcaaa aacagcgggc
     3001 taatcagttg cagcgccgcc accgtccacc atacagtgag taaaaccgct aacgtgccaa
     3061 tgcttaaggt cacctgacgc gagagcggcc agcgccattt cagccgccgc gaatgcagtt
     3121 tttcattaat gagcacactc atgagaacgc ctcccgttgc tcaaatacgc ggcttaaaac
     3181 atattcgcgc atggcgatga attgtggatc ggacttgatg ctgcggctcg actctcccgc
     3241 aacaaagcgg cgagcaaagt tgagcggcag ccgctccagc acacggccag ggccggatga
     3301 aagcagaacc agttcagtcg ccataaacac cgcttcttct atatcgtggg taatcaacag
     3361 cacctgcttg cccgtctcct gccagagttt cagcagcaga gtttgcatct ggtcgcgggt
     3421 gaaggcgtcc agcgcaccaa acggttcgtc gagtaataac agctggggat tcgccgccag
     3481 cgcgcgggca atccccaccc gctgacgttg accaccggaa agctgccaga tatagcgttt
     3541 ttctgcgcct tccagcccca cttttttcag cacctggtgc gcgatttcca gtcgctgcat
     3601 tttctctata cctgccaatt gcaggccgaa cgccacgttg tcctgtacat tgcgccacgg
     3661 tagcagccct tcattctgaa aaaccacccc gcgctctgct cccggtccct caatacgctt
     3721 acccgccagt tgaatgctgc catgctgata aggcacaaaa ccggcaatca gattcagcaa
     3781 cgtggtttta ccgcagccgg acggccccag caccaccagt agctcgccgc tttccagcgt
     3841 caggttgata tcttccagtg ccggtttgcc gccataatcg gcatagagat gagagatttg
     3901 cagcatctgc gcctcctttt attgcacgaa gcgcgaggta acgtactggc tgtaatcatt
     3961 cgctacagcc gggaccttgc cctgctcttt caaaaactgc gcggtgtcga tgattacttt
     4021 gttcaccggt ccggtcagtt ctgccgtttg ttgctgcggc gtcagatagg tattcccctt
     4081 aaccagcccc ggaacgtcac cttccggcac gccgcttaaa cgcgccagtt tgctgatgtt
     4141 ttccggctgt ttcagccacg cgtctgggtt agcaatgtac ggttgctgag catcgatggc
     4201 gcttttagcg aacgctttca cgacctcagg atgtttctcg gcaaaatctt tgcgcaccac
     4261 ccagacgtcc agcgttggcg caccccactg cccgacctgt tcagaatcgg tcaacacctt
     4321 gccgtctttt tccagggcgt taaccgccgg tgcccagaca taagcaccat caatatcacc
     4381 ccgctgccat gcggcgataa tcgcgggcgg ctgcaggttc acaatctcca cttgccctag
     4441 tttaatcccc cagtgtttca gcgccgccag caggctgtag tgggtggtgg agataaacgg
     4501 tacggcaatg cgtttgccaa tcaaatcttc gggtttgctg atagttttct ttaccaccag
     4561 cgcttcggag ttacccagtt ttgacgccag caagaagact tcaatcggca cctgttggct
     4621 ggctgcaacc gctaatgggc tggaaccgag gttgccgatt tgcacgtcgc cagaagccag
     4681 cgcccgcacg atgctggctc cgctgtcaaa cttacgccag tccacgctcg ccccgctctc
     4741 tttagcaaag gtgttgccgg cctgagccac tttcgccggt tcggctgagg tttgatacgc
     4801 cacggtgacg ttcaccgcct gtgcctgaaa agcgatgaat gccagtgcgg caagaagtgt
     4861 gttacgcgat gaaattgcca tgattgtctg ctccccagtc ttgttatggg agcagtattc
     4921 aggaataaaa acattcatta aaagaattag tcgttatcgc
//
LOCUS       DAJVSY010000218         4911 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.220, whole genome shotgun sequence.
ACCESSION   DAJVSY010000218 DAJVSY010000000
VERSION     DAJVSY010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4911)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4911)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4911
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.220"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..3318)
                     /gene="sigA"
                     /locus_tag="OQQ19_003904"
     CDS             complement(<1..3318)
                     /gene="sigA"
                     /locus_tag="OQQ19_003904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease autotransporter toxin SigA"
                     /protein_id="HCS1805346.1"
                     /translation="MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSI
                     YGSYGETAFAAMLDINNIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVP
                     DFSAVSNKGATTSIGGAYSVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRL
                     NKFVVETTGVTESADFSLSPEDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLF
                     GQNYNPDLLSASLFNLDWKNKSYIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHG
                     VTSTVGFISSTNIAWTNYSLFNNILVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVS
                     GGGELTLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGD
                     NLHKIGSGTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSES
                     GNGEIYFTRNGGTLDLNGYDQSFQKIAATDAGTTVTNSNVKQSTLSLTNTDAYMYHGN
                     VSGNISINHIINTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGN
                     NNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNL
                     ENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSA
                     GESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIE
                     LAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQNYAWVNGNIKSDKKASILF
                     GVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQS
                     LKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGS
                     NNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEH
                     TTWTLTGYKVAENTASSSAAKSYMSGNYKAFLTEVNNLNKRMGDLRDTNGEVGAWARI
                     MSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSV
                     GAGLYASAIFDSGAYIDL"
     gene            complement(3679..4683)
                     /locus_tag="OQQ19_003905"
                     /pseudo
     CDS             complement(3679..4683)
                     /locus_tag="OQQ19_003905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003557916.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
     gene            4680..4911
                     /locus_tag="OQQ19_003906"
                     /pseudo
     CDS             4680..4911
                     /locus_tag="OQQ19_003906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080195.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT         1209 a         1087 c         1093 g         1522 t
ORIGIN      
        1 caggtcgata taggcaccag agtcaaatat agcggaagca tacagacctg ccccgacgga
       61 cttcgtcttg ccactgaatg cattactgct ggcatgactg tcggtatacg tcatagtcag
      121 accagtgaaa aggtcaagtc catccagctc atgtttttta tccacaccaa tctgcacatg
      181 ggtgtagttg tcactgtatc caccagaagc tgaacctgct ccgctcatga tgcgggccca
      241 tgcaccgacc tcgccattgg tgtcacgcag atcccccatt cgtttattca ggttgttgac
      301 ttctgtcagg aaggctttgt aattaccgga catatacgat tttgctgcac tggaagatgc
      361 tgtattttca gccaccttat atccggtcag ggtccacgtg gtatgttcct gatcctcttt
      421 cgtgctgatc acaggagata tgttgctgaa acctatggcc tgagtactgg ctttaaatat
      481 ctctttattg cttccttttg gggctgttat caggtcaacg tttaatcctg agttattatt
      541 tcccactttc tgtatatcga ccgacagact gttattgctt ccggttaact gatttttaac
      601 aatgagttta tccgattgat ttacagactg gctcagatca gcccgcataa tcacagcagt
      661 attagtggca tccagtgtgt ttactgtcac agtatggaaa cccgaattct ctatgttact
      721 aaacaacaaa agactgtcgc gggtttttaa tgattgcagg gctgactgtc cgtttactct
      781 ccataaggtg ttatacatgc tggctgaggc agcaggagca tcaatacctc cggtataaga
      841 agtatcaaag ccacccagca aacctgtagc cagcggtgtg tgtgtggttt tgtccaggtt
      901 atcttcttta tactggtcaa caccaaacag aatagatgct tttttgtctg attttatatt
      961 accattgacc caggcataat tttgagcctt taacgtggca ccatcttctg tcatattata
     1021 tccatctgac atatagattg ccgggctgta tttattattt tctgtagggg tgcctgttaa
     1081 tgtcagggtt ccggccagtt caatagcttt atctacatac atttttccct gggcggtaac
     1141 agtagctcct ttgttgataa tcaggtctgt attaattaag gataatgcac cagtcatagt
     1201 aacagttgat ttatcaccaa cagttatttt gctgttttga gcactcagac tgccgttgaa
     1261 actactttcg cctgctgaat ccccggagcg aagctgttgt ctgaatccaa aaccttcgcc
     1321 agtaatgttt cttcctgaga acatgtcaat gtatgcagtt ttatttccca gaacaatttg
     1381 agagttttta gcctctatgt gtccttttac attagcatcc cggcctatac tcagggttgc
     1441 gttttctaaa tttaatttcc ggaaattaaa tttacgactt tcccagtcgg gctgggaaaa
     1501 agaggctatc tgattgttgg acttatattc cgtattgtaa cgtttattta cagtgctttc
     1561 ctggtccttt atggcagcag aatagtcttt ttgacataaa aaaggaattg gacagttgtt
     1621 attgccttct ttaaatatgg catgttctgt cgcatgtcct tgtaatgtta actgtgcatt
     1681 ccggacagag atatcgtttt tgatatcgac tgagccatca aagatcagat tggcattatt
     1741 gttatgttgc tgggtagtat tgataatatg atttatgctt atattacctg atacattccc
     1801 atggtacata tatgcatcag tattagtaag tgataatgtt gattgcttca cgtttgagtt
     1861 cgttacggtt gttcccgcat ctgttgctgc gattttctga aatgactggt catagccgtt
     1921 tagatccagt gttccgccat ttctggtaaa atagatttcg ccattaccgc tttcgcttaa
     1981 agcgtctttg gcatttattt ttaccgtacc tttacctccg gccatgtaaa ttttattgaa
     2041 ggctttttca gcactaagga tgacagtccc attacctatt ttaaggttat ttccctgtgc
     2101 tatttttaca tccagagtac cactacctat tttatgcaga ttatctccgg caacgccctt
     2161 aacattccat tcaacggtgg tattattatc aatatctatc ccggcacctt tataagactt
     2221 atcttttccg tacactttat atgtctggtt cttatcgaat ataagcccgc caatgccaag
     2281 atcggtatcc tgcttgagcg ttaattcccc tcctcctgag acagacaggt ccttatcttt
     2341 tataatcgat gataactctt gttttttacc atccagctgc atagtgtttg tgaaattctt
     2401 ttttaaattg tttaccagaa tattattaaa taacgagtag tttgtccagg ctatattggt
     2461 actactgata aaaccaactg tactggtaac accatggaaa acccattttt gttgttcttt
     2521 atcatataga taagaaccag aaccactatc gccaaaaatt ggtgagtttt taaaaggggt
     2581 tctgttggta taaatgtaac tcttgttttt ccagtccaga ttaaaaagac ttgcgcttaa
     2641 caagtcggga ttatagtttt gtccaaacag atattgtttg ccgtttaata tcgttgaggt
     2701 tgttccggca cctgctctga agccaattat ttgttcctta ccgttgtagt ttacgccata
     2761 tcttttcatc gcatcttcgg gagaaagtga gaagtcggca ctctccgtaa cccctgttgt
     2821 ttccacgacg aatttattca gacgatgaac cgaaaagtcg ccagatgata ctctgttact
     2881 tgctttatat gctgtctgat cccatgactg tgttgttatt gcatgatgct gtgtaccgtt
     2941 atgagtcgca gtaacactgt acgcacctcc aattgatgtt gttgcacctt tgttggaaac
     3001 agcagaaaaa tcaggtacag gtagttctgg aaaatgaaat atctttccat ctttcatcat
     3061 taattgaaca tttgttgcac ccggtctgaa ctctcctctg ttttgagcaa ggtcaagata
     3121 atcgcgggtc catatattat ttatatccag cattgctgca aatgctgttt caccataact
     3181 tccatatatt gaggataaaa taataccgag gataactttc tttcttgatg taccgacact
     3241 aactttccgg gtcagttcag aaacagcaac taatccacct gtaatatgac tatatttcag
     3301 tgaataaatt ttattcatac gtgaactccg atatttctga gttgtggtta tgggatagca
     3361 tttaattaca acggggaact atcagtcatg gtacgtaact gataagggta taatgataat
     3421 cactgtcagt tatatttgta tgacagatgt aacaaaatga aaaaaaagat aagcacaagt
     3481 gattgattgg tcagatattg atcacctggt gtttgtattt tgacctttgc gatcaaaatt
     3541 tgatctttgt tgtttccggt caatccttta caggttttct gtattatccg ggggagttaa
     3601 gtctgtcgat gtccgacaga cttttgatga tggaaacaac atgcagcgat aatgtgcatg
     3661 ctgttttgca ggtggaactc agaaggtgaa ctggaactgt gcgaccgcac cgtaagtgtt
     3721 gtccgtgccg atcaggcctg caacatcaag gtgaaccaca tcaaacggtg agatccccac
     3781 cccggccgtg aatgcactgc cgtcgttacc ggccagattc tgacggtaac cggcgcgcag
     3841 ctgtgcccat ttccaggcat taaattctgc gccaatggcg gcaaactgac ggttgctgtc
     3901 ggaggtgaaa ccgctggccg gggtcagatc cacatcaaat gcggtggtga acatcgcgtt
     3961 gtgccaggag acaccggccg tcacctgcgg gcggatcctg aaggtttccg tgataccgtt
     4021 cacttctttt gtctcaatac tacgggggat caggttctgt gcgaccagtc ccagcgtcca
     4081 gttgtcatcc aggttcgtac tggcaccgat gtcggcgttg atgccatttt tcgtgttgtg
     4141 gtagcggtcg cctttgaagg cgctgctgtc ataatttctg accagcacgt tgtagttgaa
     4201 caggtcgacg cgctggaatt tgggggggaa gcccagagac catttctgcc cggccgtttc
     4261 cagttccgta gccagagcaa tacccacatc agtgatcagt gccgcgcggg caaaggcctg
     4321 tgatgtcagg cggcttttgt ccacctcctg cccggtgctg tttgccacct cttccaggta
     4381 agtgaggtca gcatcagaga ctttaccgtc gacactgacg gtgccgtgtg atttaaccat
     4441 cagtgcggca gagaggcgat caccgggaag ggccgccaca gcagaaacgc ccagctgtgc
     4501 ggcggcatgt gtgttacgga agtcccggag gtgttctttc aggcgtgcgg cagcctcagg
     4561 aacaccgtgg ttactttcga tggcgcggtc gaaggccttc cactcatcac tgatccggtc
     4621 ggcgttgtcg gtgatattat ccggattgga gagctgcgcg ccgacggacg gaagcaggat
     4681 gctgggctca tgcgcgacgc aaaatccacg atgtatatat cagtactaaa agcgcgacgg
     4741 cggaagaagc tctgaaacta atcggtgaac tgtacgccat agagcacgat atacgcgggt
     4801 taccggtgtc tgaacgcctg gcggtcaggc aaatgcagag tagaccgctc ctgacttccc
     4861 tgtataagct gatgcaggag aaagaacaca cgttatcgaa gaaatgtcgt c
//
LOCUS       DAJVSY010000219         4862 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.221, whole genome shotgun sequence.
ACCESSION   DAJVSY010000219 DAJVSY010000000
VERSION     DAJVSY010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4862)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4862)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4862
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.221"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            148..264
                     /locus_tag="OQQ19_003907"
     CDS             148..264
                     /locus_tag="OQQ19_003907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004996477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCS1805347.1"
                     /translation="MPGIPPEIRWNNQKNALQLWNKEGGVVRREGDPLEMAQ"
     gene            628..1470
                     /locus_tag="OQQ19_003908"
     CDS             628..1470
                     /locus_tag="OQQ19_003908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HCS1805348.1"
                     /translation="MLNEGGILFKANHVPVLMYHHVSHCPGLVTLSPVTFRKQMKWLA
                     ENNWKTLSSDELEFFYRGGKLPRKSVMLTFDDGYLDNWFQVYPLLKEFNLKAHIFLIT
                     GFIGNGPVRHSPGKEYSHRDCEHQIATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTH
                     TRWDKKFSSREEQCKHLRQDLLSGREYLKEMTGKCSKHLCWPEGYYNKDYIQVAEELG
                     FYYLYTTERRMNAPAKGTTRIGRISTKERESCAWLKRRLFYYTTPFFSSLLAFHKGPR
                     LPDD"
     gene            1473..2561
                     /gene="capU"
                     /locus_tag="OQQ19_003909"
     CDS             1473..2561
                     /gene="capU"
                     /locus_tag="OQQ19_003909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative hexosyltransferase CapU"
                     /protein_id="HCS1805349.1"
                     /translation="MNILFTESSPNIGGQELQAVAQMKALKKMGHSVLLVCRENSKIA
                     FEASKLGIDITFALFRNSLHIPTAWRLLGIVHGFQPNAIVCHSGHDSNIVGLVRLFTW
                     KHPFRIIRQKTYLTQKTKVFSINHFCDEVIVPGTSMKTHLEQEGCRTRVTVVPPGFDF
                     QKLYVDSRNSLPPNVLSWLASRRGCPVIAQVGMLRPEKGHEFMLNLLFHLKMNGRQFC
                     WLIVGSGSPELREHLQYQIDSMGMHDDVFIADNVFPAAPVYRVASLVVLPSENESFGM
                     VLAEASAFSVPVLASQIGGIPDVIQNNQTGTLLPAGNKHAWMCALNDFFNDPGRFYQM
                     ARQAKQDIEERFDINKTALKILTLAKHK"
     gene            2566..3516
                     /gene="virK"
                     /locus_tag="OQQ19_003910"
     CDS             2566..3516
                     /gene="virK"
                     /locus_tag="OQQ19_003910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor VirK"
                     /protein_id="HCS1805350.1"
                     /translation="MFSVSNLSFIGFLKRIVFSSDSLPGKWEHRKFRFMYILRCAINP
                     VASIRYYYELRSLPCIEDILAIHPTLPARIHRPYLHKGGRAWTRGQYILEHYRFVQNL
                     PEKYSKFLFPQKSVSLVQFIGKDGENFDIQCSSSGFDREGELMLSLFYNKTVITRLTF
                     SVILTQNGHIAFIGGLQGAPKNTGPDVIRCATRACYGIFPKRIIFEAFCALMKACNIS
                     ECLAVSEHSHVFRQLRYWYQKRKTFVAVYSDFWESVAGKTCGDWYRLPTQVIRKPLSD
                     IASKKRSEYRKRYALLDYIHETTIRSLDAYPVHSEHQDLN"
     gene            3581..4525
                     /gene="lpxM"
                     /locus_tag="OQQ19_003911"
                     /gene_synonym="msbB"
     CDS             3581..4525
                     /gene="lpxM"
                     /locus_tag="OQQ19_003911"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858371.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HCS1805351.1"
                     /translation="MKKYKSEFIPEFKKNYLSPVYWSTWFLLGMIAGISMFPPSFRDP
                     VLAKIGRWAGRLSKKARRRATINLSLCFPEKSDTEREIIVDKMFATALQSIVMMAELA
                     IRGPEKFQKRVFWKGLEILEEIRYNNRNVIFLVPHGWSVDIPAMLLAAQGEKMAAMFH
                     QQRNPVIDYVWNSVRRKFGGRLHSREDGIKPFIQSVRQGYWGYYLPDQDHGPEYSEFA
                     DFFATYKATLPIIGRLMNISQAMIIPLFPVYDEKKHFLTIEVRPPMDACIASADNKMI
                     ARQMNKTVEILVGSHPEQYIWVLKLLKTRKSNEADPYP"
     gene            complement(4679..>4862)
                     /locus_tag="OQQ19_003912"
     CDS             complement(4679..>4862)
                     /locus_tag="OQQ19_003912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001395480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HCS1805352.1"
                     /translation="IYQPVYSPWVNHAERLWQALHDTITRNHQCRSMWQLLKKVRHFM
                     ETVSPFPGGKHGLAKV"
BASE COUNT         1386 a          922 c         1116 g         1438 t
ORIGIN      
        1 tatcggtggc aatagcctgt gcaaattttt tataacccgg gatcgtgtca ggattcagag
       61 tatgataaag acagattttc atggctgccg gtttccgtcg tgcaaaaaac atgctgattt
      121 tacgaaggaa tgccttactg aacaaccttg cccggaatac cccccgaaat cagatggaac
      181 aatcagaaaa atgctctgca gttatggaat aaagaaggtg gggtggtacg ccgggagggc
      241 gatccgctgg aaatggcgca gtagctgcag gcctgtcatg atgccggaat agaagttcgt
      301 gtacaggtta atgaaagcgt caccccgtaa ataaactctg cgctgaaatt cctttttttc
      361 attggagcac ctgtgttgtt ctgaggtgaa catatcacct ctgttcaggt agccaaattc
      421 agtgtgccac ctcaaggttc ttagtgagtc gtttttaaaa gatatgataa tatatcattg
      481 tttatgaatt gttgatgttt aatttagtaa aatatatcaa gtatgccatg ggtttgctat
      541 gttattcatc cagtatctgg aaataaaatg caccagcttt attgggtttt ccttttgtct
      601 ctgcttacta ggtgccagaa actttaaatg ttaaacgaag ggggcatttt gttcaaagcc
      661 aatcatgttc cggtattaat gtatcatcat gtcagtcatt gccccggact ggttacactt
      721 tctcccgtga cattccggaa gcaaatgaaa tggttggctg aaaataactg gaaaacactg
      781 tcatcagatg aactggagtt tttttatcgg ggcggaaaac tcccccggaa aagcgttatg
      841 ttgacatttg atgatggata ccttgacaac tggtttcagg tatatccttt attaaaagag
      901 tttaatctca aagcacatat ttttttaatt accggtttta ttgggaatgg tccggttcgt
      961 cactctcctg gaaaggaata ttctcatcgc gattgcgaac atcaaatagc gacagggaat
     1021 gctgataatg ttatgcttcg ctggtctgaa gtaaacgaaa tgttgcaatc tggtctggtc
     1081 gaatttcatg ttcatacgca tactcataca cgctgggata aaaagttcag ttcacgagaa
     1141 gaacagtgta aacatcttcg gcaggacttg ttgagtggga gagaatattt gaaagaaatg
     1201 acaggaaaat gcagtaaaca tttgtgttgg ccggaaggtt attataataa ggattatatt
     1261 caggtcgctg aagaacttgg attctattat ttatatacaa cagaaagaag aatgaatgct
     1321 cctgctaaag gaactacacg gataggaaga ataagcacca aagaacggga aagttgcgca
     1381 tggctgaaaa gacgactttt ttattataca acaccgtttt tttcatcgtt gctggccttt
     1441 cataaggggc caagattacc ggatgattaa taatgaatat actatttacg gaatcatcac
     1501 cgaatatagg tggtcaggaa ttacaggctg ttgctcaaat gaaggccctg aagaaaatgg
     1561 ggcattcagt tctgcttgtc tgcagggaaa acagcaaaat tgcttttgaa gccagtaaat
     1621 tgggaattga tatcacattc gcgttatttc gaaacagtct tcacatccct actgcatgga
     1681 gattactcgg aatagttcat ggttttcagc ccaatgcaat cgtttgtcac agtgggcatg
     1741 atagcaatat tgttggttta gtacggttat tcacttggaa acatccattc agaattatca
     1801 ggcaaaagac atatttgaca caaaaaacaa aagttttttc aataaatcat ttttgcgatg
     1861 aggtgattgt tcccggaaca agtatgaaga cacatctgga gcaggaagga tgtcgaaccc
     1921 gggttactgt tgtgcctcca ggctttgatt tccagaaatt atacgttgat tcccgaaaca
     1981 gtttgcctcc aaatgttctt tcttggctgg cgtcccgaag gggatgcccc gttattgctc
     2041 aggtaggaat gttgcgcccg gaaaaagggc acgaatttat gttgaattta ctgttccatt
     2101 taaaaatgaa tggacgacag ttctgttggt tgattgtggg gtctggttcg cctgaactgc
     2161 gggagcattt acagtatcag attgacagta tgggcatgca tgatgatgtt tttattgctg
     2221 acaatgtttt tcctgccgcc cccgtatatc gggttgccag tctggtggtt ctgccttcag
     2281 aaaacgaatc gtttggtatg gtactggcag aagcatcggc attttctgtg cctgtactgg
     2341 ccagtcagat tggtggaatc cctgatgtta ttcagaacaa ccagaccggg acattgttac
     2401 cagcaggtaa taagcacgca tggatgtgcg ccctgaatga tttttttaat gaccctgggc
     2461 gtttttatca gatggctcgc caggcaaaac aggatataga agagcggttt gatattaata
     2521 aaactgcgtt aaaaatactc acattagcga agcacaagta acaatatgtt ttctgtaagt
     2581 aacttatcat ttatcggttt ccttaaaagg attgtttttt cctcagattc actcccgggg
     2641 aagtgggaac acagaaaatt ccggttcatg tacattttgc gatgtgctat aaatccggtt
     2701 gccagtattc gatattatta cgaactgcgt tccttgccgt gcattgagga tattctggca
     2761 atacacccca cgttgccagc aagaattcat cgcccttatt tgcataaagg ggggcgcgcc
     2821 tggacccgtg gacaatatat tcttgagcat tatcgctttg tgcaaaattt gccagaaaaa
     2881 tattctaaat ttttgtttcc acaaaaatcg gtatcattag tccaattcat cgggaaagat
     2941 ggagagaatt ttgatatcca gtgttcttcc agtggttttg accgggaagg agagttgatg
     3001 ttgtcattgt tttacaataa aacagttatt acccggttaa cattttcagt cattctgact
     3061 caaaatggac acattgcttt tattggcgga ttacagggag cccctaaaaa taccggacct
     3121 gatgttattc ggtgcgcaac ccgggcctgt tatgggattt tcccaaaacg gattattttt
     3181 gaagcatttt gtgcgttgat gaaagcttgc aatatctctg agtgtctggc agtcagtgag
     3241 cacagtcatg ttttccggca attgagatac tggtatcaga aacgcaaaac ctttgttgcg
     3301 gtctatagtg atttctggga gtctgtagca ggaaaaacct gtggtgactg gtacagatta
     3361 ccaacccagg tgattcgaaa gccgctaagc gatatagcca gtaaaaaacg ctctgagtac
     3421 cgaaaacgat acgctttgct ggattatatc catgaaacta ctatccgctc tttggatgca
     3481 tatcctgtac actcagaaca tcaggattta aattaaggtt tgatgtattc tctgaataaa
     3541 acagtaatga taattttggt agaggcattc gcactaaata atgaaaaaat ataaatctga
     3601 gtttattcct gaatttaaga aaaattatct ttcccctgtt tactggtcta catggttcct
     3661 tttgggaatg attgcaggta tttcaatgtt tcccccttca ttcagagatc ctgtcttggc
     3721 aaaaataggg cgttgggcgg gcagattgag caaaaaagct cgtcgcaggg cgacgattaa
     3781 tttatcgctt tgtttcccag aaaagagtga tacagaacgg gaaataattg tcgacaaaat
     3841 gtttgccaca gcattgcaat ccatagtgat gatggcagaa ctggcaattc gtggtccgga
     3901 aaagttccag aaacgagtgt tctggaaagg cctcgaaatt cttgaggaaa ttcgatacaa
     3961 taacagaaat gtgatttttc tggttcccca tggctggagc gtggatattc ctgcaatgtt
     4021 gctggcagct cagggggaaa aaatggccgc catgtttcat cagcaacgaa atccagtgat
     4081 tgattatgtc tggaattctg tacggcgtaa attcgggggg cgcttacatt cccgggagga
     4141 tgggataaaa ccatttattc agtcagtacg ccagggatac tgggggtatt accttccaga
     4201 tcaggatcat ggtcctgaat acagtgaatt tgctgatttt tttgcgacct ataaagcgac
     4261 attaccaatt attggacgtc tgatgaacat cagtcaggct atgattatac cgcttttccc
     4321 ggtttatgat gaaaaaaaac atttcctgac tattgaagtt cggccaccaa tggatgcatg
     4381 cattgccagc gcggacaata aaatgattgc ccgacaaatg aacaaaacag tggaaatttt
     4441 ggtggggtca catccggaac agtatatctg ggttttaaaa ttgttaaaaa cgcgcaaatc
     4501 aaacgaagcg gacccgtacc cttgaaatta taaagtacag gtatttccac tagttgtttc
     4561 ttacaggtta ccaatcgaaa cacatccccc ttccgtgtgt tgcccgtttg gcacggagga
     4621 ctgtgtagat gcagttcgtt aaatttaatt tatgcctaaa tagctgcgct taataccgct
     4681 acacttttgc cagtccatgt ttgcctccgg ggaatgggct gacggtttcc ataaaatggc
     4741 gaactttttt caacagttgc cacattgagc ggcactgatg attacgcgtt attgtgtcgt
     4801 gaagtgcctg ccatagccgt tcagcatgat tcacccatgg cgagtaaacc ggctgataaa
     4861 tg
//
LOCUS       DAJVSY010000220         4852 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.222, whole genome shotgun sequence.
ACCESSION   DAJVSY010000220 DAJVSY010000000
VERSION     DAJVSY010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4852)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4852)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4852
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.222"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..1250)
                     /locus_tag="OQQ19_003913"
     CDS             complement(<1..1250)
                     /locus_tag="OQQ19_003913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AGCS family amino acid carrier protein"
                     /protein_id="HCS1805353.1"
                     /translation="MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFG
                     KSLKNSIHPQPGGLTSFQSLCTSLAARVGSGNLAGVALAITAGGPRAVFWMWVAAFIG
                     MATSFAECSLAQLYKERDVNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSG
                     VQANAVARALSFSFDFPPLVTGIILAVFALLAITRGLHGVARLMQGFVPLMAIIWVLT
                     SMVICVINIGQLPHVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMG
                     STPNAAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILLAGNDTTYMPLEGIQ
                     LIQKAMRVLMGSWGAEFVTLVVILFAFSSIVANYIYAENNLFFLRLNTPKAIWCLRIC
                     TFATVIGGTLLSLPLMWQLADIIMA"
     gene            1529..2482
                     /gene="tal"
                     /locus_tag="OQQ19_003914"
     CDS             1529..2482
                     /gene="tal"
                     /locus_tag="OQQ19_003914"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HCS1805354.1"
                     /translation="MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQ
                     IPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLS
                     YDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFS
                     FAQARACAEAGVFLISPFVGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGY
                     ETVVMGASFRNIGEILELAGCDRLTIAPTLLKELAESEGAIERKLSYTGEVKARPARI
                     TESEFLWQHNQDPMAVDKLAEGIRKFAIDQEKLEKMIGDLL"
     gene            2597..3184
                     /gene="mog"
                     /locus_tag="OQQ19_003915"
     CDS             2597..3184
                     /gene="mog"
                     /locus_tag="OQQ19_003915"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HCS1805355.1"
                     /translation="MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSVLTTPFELET
                     RLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQ
                     MRQISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKDAAGNVVVHGIFA
                     SVPYCIQLLEGPYVETAPEVVAAFRPKSARRDVSE"
     gene            complement(3219..3785)
                     /gene="satP"
                     /locus_tag="OQQ19_003916"
     CDS             complement(3219..3785)
                     /gene="satP"
                     /locus_tag="OQQ19_003916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HCS1805356.1"
                     /translation="MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIF
                     YSGIAQIFAGLLEYKKGNTFGLTAFTSYGSFWLTLVAILLMPKLGLTDAPNAQFLGVY
                     LGLWGVFTLFMFFGTLKGARVLQFVFFSLTVLFALLAIGNIAGNAAIIHFAGWIGLIC
                     GASAIYLAMGEVLNEQFGRTVLPIGESH"
     gene            complement(3934..4647)
                     /gene="msyB"
                     /locus_tag="OQQ19_003917"
     CDS             complement(3934..4647)
                     /gene="msyB"
                     /locus_tag="OQQ19_003917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acidic protein MsyB"
                     /protein_id="HCS1805357.1"
                     /translation="MNVNYLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLM
                     RNELFKSMEGHPEQHRRNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKL
                     KADKEMSTFEIEQQLLEQFLRNTWKKMDEEHKQEFLHAFDARVNELEELLPLLMKDKL
                     LAKGVSHLLSSQLTRILRTHAAMSVLGHGLLRGAGLGGPVGAALNGVKAVSGSAYRVT
                     IPAVLQIACLRRMVSATQV"
     gene            complement(4673..>4852)
                     /locus_tag="OQQ19_003918"
     CDS             complement(4673..>4852)
                     /locus_tag="OQQ19_003918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2541 family protein"
                     /protein_id="HCS1805358.1"
                     /translation="ARSASQSLNIPSEIKEGQTTDWININSDNDNKRCVSKITFSGHT
                     VNSSDMATLKIIGDD"
BASE COUNT         1275 a         1250 c         1229 g         1098 t
ORIGIN      
        1 gccattatga tatctgccag ttgccacatc agcggaaggc ttagcaaggt gccgccgatg
       61 accgttgcga aggtgcagat ccgcaaacac cagatcgctt taggggtgtt caggcgtaaa
      121 aagaagagat tgttttcggc ataaatgtag ttggcaacga tggagctgaa ggcaaacaga
      181 ataaccacga gggtaacaaa ctcagcaccc caggaaccca ttagcacccg catcgccttc
      241 tggataagct gaataccttc cagcggcatg taggttgtgt cgttacccgc cagtaatatc
      301 agcatggcgc ttgccgtaca gatgaccagg gtgtcgataa aaatgccaat catctggaca
      361 atcccttgcg ctgccggatg cggaggccag gacgccgctg ccgctgccgc gtttggcgtc
      421 gaacccattc ccgcctcatt ggaaaacata ctgcgctgaa aaccgttagt aatcgcctgg
      481 cttaaggtat atcccgccgc gccgcctgcc gcttcctgcc agccaaaagc actctcaaaa
      541 atagaccaaa tgacgtgggg aagttgcccg atatttatta cgcaaatcac catgctggtc
      601 agcacccaga ttatcgccat caacgggaca aacccctgca tgagccgggc gacgccatga
      661 agaccgcgag tgattgccag cagagcaaag acagcgagaa taatgcctgt caccagcggg
      721 ggaaaatcaa aagaaaaact cagggctcgg gcaacggcgt tcgcctgaac tccgctgaaa
      781 attatgccgt aggcgatgag caaaaagacg gcgaacagaa cgcccatcca acgcatcccc
      841 agcccgcgcg ccatatacca tgccggtccg ccacgaaact gcccattgac gtcacgttct
      901 ttataaagtt gtgcaaggga acattcggca aacgaggtcg ccatgccgat aaacgcggca
      961 acccacatcc aaaagacggc tctaggtcca ccggcggtaa tagccagcgc aacgccggcc
     1021 aggttgccgc tacccacgcg cgccgcaaga ctggtacaca atgactgaaa tgaggttaaa
     1081 ccgcctggct gtggatgaat gctattttta agacttttgc caaactggcg gatgtagcga
     1141 aactgcacaa atccggtgcg aaaagtgaac caacaacctg cgccgaagag caggtaaatc
     1201 attaccgatc cccaaaggac gctgttaata aaggagaaaa aatctggcat gcatatccct
     1261 cttattgccg gtcgcgatga ctttcctgtg taaacgttac caattgttta agaagtatat
     1321 acgctacgag gtacttgata acttctgcgt agcatacatg aggttttgta taaaaatggc
     1381 gggcgatatc aacgcagtgt cagaaatccg aaacagtctc gcctggcgat aaccgtcttg
     1441 tcggcggttg cgctgacgtt gcgtcgtgat atcatcaggg cagaccggtt acatccccct
     1501 aacaagctgt ttaaagagaa atactatcat gacggacaaa ttgacctccc ttcgtcagta
     1561 caccaccgta gtggccgaca ctggggacat cgcggcaatg aagctgtatc aaccgcagga
     1621 tgccacaacc aacccttctc tcattcttaa cgcagcgcag attccggaat accgtaagtt
     1681 gattgatgat gctgtcgcct gggcgaaaca gcagagcaac gatcgcgcgc agcagatcgt
     1741 ggacgcgacc gacaaactgg cagtaaatat tggtctggaa atcctgaaac tggttccggg
     1801 tcgtatctca actgaagttg atgcgcgtct ttcctatgac accgaagcgt caattgcgaa
     1861 agcaaaacgc ctgatcaaac tctacaacga tgctggtatt agcaacgatc gtattctgat
     1921 caaactggct tctacctggc agggtatccg tgctgcagaa cagctggaaa aagaaggcat
     1981 caactgtaac ctgaccctgc tgttctcctt cgctcaggct cgtgcttgtg cggaagcagg
     2041 cgtgttcctg atctcgccat ttgttggccg tattcttgac tggtacaaag cgaatactga
     2101 taagaaagag tacgctccgg cagaagatcc gggcgtggtt tctgtatctg aaatctacca
     2161 gtactacaaa gagcacggtt atgaaaccgt ggttatgggc gcaagcttcc gtaacatcgg
     2221 cgaaattctg gaactggcag gctgcgaccg tcttaccatc gcacctacac tgctgaaaga
     2281 gctggctgag agcgaagggg ctatcgaacg taaactgtct tacaccggcg aagtgaaagc
     2341 gcgtccggcg cgtatcactg agtccgagtt cctgtggcag cacaaccagg atccaatggc
     2401 agtagataaa ctggcggaag gtatccgtaa gtttgctatt gaccaggaaa aactggaaaa
     2461 aatgatcggc gatctgctgt aatcattctt agcgtgaccg ggaagtcggt cacgctacct
     2521 cttctgaagc ctgtctgtca ctcccttcgc agtgtatcat tctgtttaac gagactgttt
     2581 aaacggaaaa atcttgatga atactttacg tattggctta gtttccatct ctgatcgcgc
     2641 atccagcggc gtttatcagg ataaaggcat ccctgcgctg gaagaatggc tgacatcggt
     2701 gctaaccacg ccgtttgaac tggaaacccg cttaatcccc gatgagcagg cgatcatcga
     2761 gcaaacgttg tgtgagctag tggatgaaat gagttgccat ctggtgctca ccacgggcgg
     2821 aactggcccg gcgcgtcgtg acgtaacgcc cgatgcgacg ctggcagtag cggaccgcga
     2881 gatgcctggc tttggtgaac agatgcgcca gataagcctg cattttgtac caactgcgat
     2941 cctttcgcgt caggttggtg tgattcgcaa acaggcgctg atccttaact tacccggtca
     3001 gccgaagtct attaaagaga cgctggaagg tgtgaaggac gctgcgggta acgttgtggt
     3061 acacggtatt tttgccagcg taccgtactg cattcagttg ctggaagggc catacgttga
     3121 aacggcacca gaagtggttg ctgcattcag accgaagagt gcaagacgcg acgttagcga
     3181 ataaaaaaat ccccccgagc ggggggatct caaaacaatt agtgggattc accaatcggc
     3241 agaacggtgc gaccaaactg ctcgttcagt acttcaccca tcgccagata gattgcactg
     3301 gcaccacaga tcagaccaat ccagccggca aagtggatga ttgcggcgtt accggcaatg
     3361 ttaccgatcg ccagcagggc aaacagcaca gtcaggctaa agaaaacgaa ttgcagaacg
     3421 cgtgcgcctt tcagcgtgcc gaagaacata aacagcgtaa atacgcccca cagacccagg
     3481 tagacaccaa ggaactgtgc atttggcgca tcggtcagac ccagtttcgg catcagcaga
     3541 atcgcaacca gcgtcagcca gaaagaaccg taagaggtga atgcggttaa accgaaagtg
     3601 ttgccttttt tgtactccag cagaccagca aaaatttgcg cgatgccgct gtagaaaatg
     3661 cccatggcaa gaataatacc gtccagagcg aaataaccca cgttgtgcag gttaagcaga
     3721 atggtggtca tgccgaagcc catcaggccc agcggtgccg gattagccaa cttagtgttg
     3781 cccataattc ctcaaaaatc atcatcgaat gaatggtgaa ataatttccc tgaataactg
     3841 tagtgttttc agggcgcggc ataataatca gccagtgggg cagtgtctac gatcttttga
     3901 ggggaaaatg aaaattttcc ccggtttccg gtatcagacc tgagtggcgc taaccatccg
     3961 gcgcaggcag gcgatttgca gtacggctgg aatcgtcacg cgataggcgc tgccgctgac
     4021 cgctttaacc ccatttagtg ccgcacctac agggcctccc agccccgcgc cgcgcagcaa
     4081 accatgccca agtacgctca ttgctgcgtg ggtgcgtaaa atgcgggtca gttggctgga
     4141 aagcaaatgc gacacgcctt ttgccaataa tttgtctttc atcagcagcg gcagcagctc
     4201 ttccagctca ttcaccctcg catcgaacgc gtgcagaaac tcctgcttat gttcctcgtc
     4261 cattttcttc caggtattac gcagaaattg ttccagtaac tgttgctcaa tttcaaacgt
     4321 agacatctct ttgtcggctt tcagcttcaa tcgttttgaa acatcgagca aaatggcccg
     4381 atacaattta ccgtgtccgc gcagtttgtt ggcgatacta tcgccaccaa aatgctgtaa
     4441 ttctccagca atcagctgcc agttgcggcg atgttgctcg ggatgccctt ccatcgattt
     4501 aaacagttcg ttgcgcatca gtacgctgga gaggcgagtt ttgccttttt cattatgggt
     4561 gagcaatcgg gcgaaatttg ccaactgttc ctcactacaa tgctgaagaa aatccagatc
     4621 tgaatcattc aggtaattaa cattcatttt ttgtggcttc tatattctgg cgttagtcgt
     4681 cgccgataat tttcagcgtg gccatatccg atgagttcac cgtatgaccg gaaaaggtga
     4741 tttttgagac gcagcgttta ttgtcgttat cactgttaat gttgatccag tcagtggttt
     4801 gcccttcttt tatttctgaa ggaatattca gactctgact ggcgctacgg gc
//
LOCUS       DAJVSY010000221         4819 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.223, whole genome shotgun sequence.
ACCESSION   DAJVSY010000221 DAJVSY010000000
VERSION     DAJVSY010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4819
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.223"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..4048)
                     /locus_tag="OQQ19_003919"
     CDS             complement(<1..4048)
                     /locus_tag="OQQ19_003919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HCS1805359.1"
                     /translation="MNKIFKVIWNPATGNYTVTSETAKSRGKKSGRSKLLISALVAGG
                     MLSSFGALANAGNDNGQGVDYGSGSAGDGWVAIGKGAKANTFMNTSGSSTAVGYDAIA
                     EGQYSSAIGSKTHAIGGASMAFGVSAISEGDRSIALGASSYSLGQYSMALGRYSKALG
                     KLSIAMGDSSKAEGANAIALGNATKATEIMSIALGDTANASKAYSMALGASSVASEEN
                     AIALGRSSVASGTDSLAFGRQSLASAANAIAIGAETEAAENATAIGNNAKAKGTNSMA
                     MGFGSLADKVNTIALGNGSQALADNAIAIGQGNKADGVDAIALGNGSQSRGLNTIALG
                     TASNATGDKSLALGSNSSANGINSVALGADSIADLDNTVSVGNSSLKRKIVNVKNGAI
                     KSDSYDAINGSQLYAISDSVAKRLGGGAAVDVDDGTVTAPTYNLKNGSKNNVGAALAV
                     LDENTLQWDQTKGKYSAAHGTSSPTASVITDVADGTISASSKDAVNGSQLKATNDDVE
                     ANTANIATNTSNIATNTANIATNTTNITNLTDSVGDLQADALLWNETKKAFSAAHGQD
                     TTSKITNVKDADLTADSTDAVNGSQLKTTNDAVATNTTNIANNTSNIATNTTNISNLT
                     ETVTNLGEDALKWDKDNGVFTAAHGTETTSKITNVKDGDLTTGSTDAVNGSQLKTTND
                     AVATNTTNIATNTTNISNLTETVTNLGEDALKWDKDNGVFTAAHGNNTASKITNILDG
                     TVTATSSDAINGSQLYDLSSNIATYFGGNASVNTDGVFTGPTYKIGETNYYNVGDALA
                     AINSSFSTSLGDALLWDATAGKFSAKHGTNGDASVITDVADGEISDSSSDAVNGSQLH
                     GVSSYVVDALGGGAEVNADGTITAPTYTIANADYDNVGDALNAIDTTLDDALLWDADA
                     GENGAFSAAHGKDKTASVITNVANGAISAASRDAINGSQLYTTNKYIADALDGDAEVN
                     ADGTITAPTYTIANAEYNNVGDALDALDDNALLWDETANGGAGAYNASHDGKASIITN
                     VANGSISEDSTDAVNGSQLNATNMMIEQNTQIINQLAGNTDATYIQENGAGINYVRTN
                     DDGLAFNDASAQGVGATAIGYNSVAKGDSSVAIGQGSYSDVDTGIALGSSSVSSRVIA
                     KGSRDTSITENGVVIGYDTTDGELLGALSIGDDGKYRQIINVADGSEAHDAVTVRQLQ
                     NAIGAVATTPTKYFHANSTEEDSLAVGTDSLAMGAKTIVNGDKGIGIGYGAYVDANAL
                     NGIAIGSNAQVIHVNSIAIGNGSTTTRGAQTNYTAYNMDAPQNSVGEFSVGSADGQRQ
                     ITNVAAGSADTDAVNVGQLKVTDERVAQN"
     gene            complement(4092..4775)
                     /locus_tag="OQQ19_003920"
     CDS             complement(4092..4775)
                     /locus_tag="OQQ19_003920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001049551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3251 domain-containing protein"
                     /protein_id="HCS1805360.1"
                     /translation="MNLKKIFFSAVTVSVLCALTGCDYIEEGKPESSLLKQQEEHNNK
                     IDLLEKQQAQLKSQLETIQKQQTGIISSTKTLTHVIKSVKDQQNTFIFTEFNPAKTKY
                     FILNNGSVALAGRVLSIDATENGSVIHISLVNLLSTPISNIGFNATWGGEKPVDAKEF
                     ARWQQLLFNTSMKSTLKLLPGQWQDINLTLKGVSPNNLGYLKLAINMENIQFDNLPSA
                     ENRQKRSKK"
BASE COUNT         1097 a         1191 c         1132 g         1399 t
ORIGIN      
        1 tattttgcgc tacgcgctca tcagtgactt tcaactgacc cacgttaacc gcatcggtat
       61 ccgctgaacc agctgcgacg tttgtgatct gacgttgacc atccgcacta ccgactgaga
      121 attcaccgac agagttctgc ggtgcgtcca tgttgtaggc ggtataattg gtttgagcgc
      181 cacgagtggt cgtagaacca ttacctatcg caatactgtt gacatgaatg acttgcgcat
      241 tgctaccaat ggcaatgccg ttaagtgcat tcgcgtccac gtaggcacca taaccgatac
      301 caataccttt atcgccattc acgatggttt tcgcacccat tgccagcgag tcagttccca
      361 ctgccagtga atcttcttcc gttgaattag cgtggaagta tttagtcggc gtggttgcga
      421 ccgcaccaat cgcattctgc aattgacgaa ccgtaacggc gtcatgggct tcggaaccat
      481 cggctacgtt gatgatttga cgatatttac cgtcatcacc gatagacaat gcaccgagca
      541 gttcgccatc cgtggtgtcg taaccaataa caacgccatt ttccgttatg ctggtgtcac
      601 gggagccttt ggcaatcact cggctggaaa cagagctgct acctagggcg atacccgtat
      661 caacgtcgct gtagctgccc tgaccaatag ctacgctgct atcgcctttg gcgacagagt
      721 tataacctat agctgtagcg ccaacaccct gtgcgctggc gtcgttgaac gctaagccgt
      781 cgtcgttagt acgcacatag ttaatacccg caccgttttc ttggatatag gttgcgtcgg
      841 tgttaccagc gagctgattg ataatttggg tgttctgctc aatcatcata ttcgtcgcat
      901 tcaactgaga accgttcact gcatcggtac tgtcctcact aatactgcca ttagcgacat
      961 tagtgatgat gctggcttta ccgtcatggc tggcattgta ggctccagca ccgccattgg
     1021 cagtctcatc ccacagcagg gcgttatcat caagcgcatc cagagcgtca ccgacgttgt
     1081 tgtactcggc gttcgcaatg gtgtaagtcg gtgcggtgat ggtgccgtca gcgttgactt
     1141 ctgcgtcacc atccagcgca tcagcgatgt acttattggt ggtatagagt tgtgagccgt
     1201 taatcgcgtc tctgctggca gcagagattg caccgttagc gacgttagtg attacactgg
     1261 cagttttatc ttttccgtga gcggcgctaa atgcaccatt ttcaccggcg tccgcatccc
     1321 agagcagagc gtcgtcaaga gtggtatcga tagcattcag ggcatcaccg acattatcgt
     1381 aatcagcatt agcaatggtg tacgtcggcg cagtgatggt gccgtctgca ttgacttcgg
     1441 caccaccccc cagcgcatca acaacataac tgctcacgcc gtggagttgt gagccgttta
     1501 ctgcgtcaga actggagtct gaaatttcac catctgcgac atcagtgatc acgcttgcgt
     1561 caccattagt accgtgtttg gcactgaatt tacctgcggt ggcatcccaa agcagagcat
     1621 cgccgagaga cgtgctaaat gaggagttaa tcgcagccag tgcatcgccg acgttataat
     1681 aatttgtttc accgattttg taggttggac cggtaaacac accgtcagta ttcacagaag
     1741 cattgccgcc gaagtaggtg gcgatattgc tgcttaagtc ataaagctgg ctaccgttaa
     1801 tggcatcgga actggttgca gtgactgtgc cgtccaggat attggtgatt ttgctggcgg
     1861 tattgttgcc atgagctgca gtgaagacac cattgtcctt atcccatttc agcgcatcct
     1921 caccaagatt agtcaccgtc tcagtcagat tagagatgtt ggtggtgtta gtggcgatat
     1981 tggtggtatt cgtcgccacg gcatcgttgg tggttttcag ctgagagccg ttaacggcat
     2041 cggtgctgcc agtcgtcagg tcgccatctt taacgttggt gattttgctg gtggtctcgg
     2101 tgccatgagc tgccgtgaat acaccattgt ccttatccca tttcagcgca tcctcaccaa
     2161 gattagtcac cgtctcagtc agattagaga tgttggtggt gttagtggca atattggaag
     2221 tgttattggc gatattggtg gtattcgtcg ccacagcatc gttggtggtt ttcagctgag
     2281 agccgttaac agcatcagtg ctgtcagccg tcaggtcggc atctttaacg ttggtgattt
     2341 tgctggtggt atcctggccg tgagctgcac tgaatgcctt tttagtttcg ttccagagca
     2401 gggcatcagc ctgaaggtca ccaacggaat ccgtcaggtt ggtgatattg gtggtattgg
     2461 tggcaatatt tgccgtattc gtggcaatgt tgctggtatt agtagcgata ttggcggtgt
     2521 tggcttcgac atcgtcattg gtagctttca gttgggaacc gttaaccgca tccttactgg
     2581 aggctgaaat cgtgccatcc gcaacatcgg tgattacgct ggcagttggg ctactagtac
     2641 catgagcagc gctgtatttg cctttggttt ggtcccattg cagggtgttt tcatcaagta
     2701 cagcgagcgc agcccctacg ttatttttgc taccattttt taaattgtag gttggtgctg
     2761 taacagtacc gtcatcaaca tctactgcag cccctcctcc aagccttttt gctaccgagt
     2821 cgctaatggc ataaagctgt gaaccattaa tggcatcgta actgtcagac ttgatcgcgc
     2881 catttttcac attaacgatc ttgcgtttta atgaactatt gccgacagag acggtattgt
     2941 ctaaatccgc aatggaatct gcgcccagcg cgacagagtt aataccgttg gcactgctat
     3001 tactaccaag cgcaagactc ttatcaccag ttgcattact ggctgtgcct aaggcaatgg
     3061 tgtttaagcc tctcgactgg ctaccattac ccagagcgat ggcatccacg ccatcagctt
     3121 tgttgccctg gcctatggcg attgcattat ctgccagagc ctggctgcca tttcctaatg
     3181 cgatagtatt gactttatcg gcaaggcttc cgaaccccat tgccatgcta ttagtccctt
     3241 ttgccttcgc attattgcca atagcagttg cattttcagc ggcttcggtc tcagcaccta
     3301 tcgcaatagc gttcgctgcg ctggcaagtg attgtctgcc aaatgcgagg ctgtcagtac
     3361 cgctagctac actgctacgc cccagggcaa ttgcgttttc ttcagatgcg acgctacttg
     3421 ctcccagcgc cattgaatac gcttttgacg cattggcggt gtcgccaaga gcaatactca
     3481 taatctcagt agctttagtg gcatttccca gggcaatggc gtttgctcct tccgctttgg
     3541 aagagtcccc catagcaata gacaatttac ccaatgcttt tgaataacgg ccgagggcca
     3601 ttgagtattg gcccaatgaa tacgaagagg cacccagtgc tatacttcta tcgccttctg
     3661 atattgcact aaccccaaag gccattgatg caccaccaat cgcatgggtt tttgacccga
     3721 tggcagagct atattggcct tcagctatag cgtcataacc cacagcagta ctggaaccac
     3781 tggtgttcat aaaagtattt gctttcgccc ctttgcctat agcaacccag ccgtcgccag
     3841 ctgatccact accgtaatca acaccctgac cgttgtcatt cccggcattc gccaatgccc
     3901 caaacgacga caacattcca cccgcaacca gcgcagaaat taacagctta ctgcgcccag
     3961 atttcttgcc acggcttttt gccgtttcgc tggtaacagt ataattccct gtcgcagggt
     4021 tccagataac tttaaatatt ttgttcatta atgatgctcg ctattccttg ttataagtgt
     4081 actaactgca tttatttttt gcttcttttc tgccgatttt cagcagaggg aagattgtcg
     4141 aactgaatat tttccatgtt gatggctaac ttcagatatc ccaggttatt gggcgagaca
     4201 cccttcaggg tcaaattaat gtcttgccat tgacctggta ataatttcaa tgtggatttc
     4261 attgatgtgt tgaaaagtaa ttgttgccac cgggcaaact ctttggcatc gacaggtttt
     4321 tcaccacccc atgtcgcatt aaaaccaata tttgagatag gtgtacttaa taagttgacc
     4381 agtgaaatat gaataacact gccattctct gtggcgtcaa tggataacac tcgacccgct
     4441 aaagccaccg aaccattgtt caggatgaaa tacttcgttt ttgctgggtt aaactcggta
     4501 aaaataaaag tgttttgttg atctttaacg gatttaatta cgtgagttaa agtctttgta
     4561 ctgcttatta tgccagtttg ttgtttttga atagtttcca gttgactctt tagctgtgct
     4621 tgttgttttt caagtagatc aattttattg ttatgttctt cttgttgttt caataaacta
     4681 ctttctggct tgccttcttc aatgtagtca catcccgtta atgcgcagag aactgaaaca
     4741 gtgacagcac tgaaaaaaat cttcttcaag ttcatgtaaa aatccttatt tcctccgacc
     4801 agcgatcaat gccggtaga
//
LOCUS       DAJVSY010000222         4794 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.224, whole genome shotgun sequence.
ACCESSION   DAJVSY010000222 DAJVSY010000000
VERSION     DAJVSY010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4794
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.224"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..799
                     /locus_tag="OQQ19_003921"
     CDS             <1..799
                     /locus_tag="OQQ19_003921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YadA family autotransporter adhesin"
                     /protein_id="HCS1805361.1"
                     /translation="SITNLNNQVTNLDTRVTNIENGIGDIVTTGSTKYFKTNTDGVDA
                     NAQGKDSVAIGSGSIAAADNSVALGTGSVAEEENTISVGSSTNQRRITNVAAGVNATD
                     AVNVSQLKSSEAGGVRYDTKADGSIDYSNITLGGGNGSTTRISNVSAGVNNNDAVNYA
                     QLKQSVQETKQYTDQRMVEMDNKLSKTESKLSGGIASAMAMTGLPQAYTPGASMASIG
                     GGTYNGESAVALGVSMVSANGRWVYKLQGSTNSQGEYSAALGAGIQW"
     gene            1167..2822
                     /gene="lldP"
                     /locus_tag="OQQ19_003922"
     CDS             1167..2822
                     /gene="lldP"
                     /locus_tag="OQQ19_003922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HCS1805362.1"
                     /translation="MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAAS
                     WTVAIALAVALLFYKMPVANALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDI
                     IRSSILSITPDQRLQMLIVGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLC
                     LIVNTAPVAFGAMGIPILVAGQVTGIDSFEIGQMVGRQLPFMTIIVLFWIMAIMDGWR
                     GIKETWPAVVVAGGSFAIAQYLSSNFIGPELPDIISSLVSLLCLTLFLKRWQPVRVFR
                     FGDLGASQVDMTLAHTGYTAGQVLRAWTPFLFLTATVTLWSIPPFKALFASGGALYEW
                     VINIPVPYLDKLVARMPPVVSEATAYAAVFKFDWFSATGTAILFAALLSIVWLKMKPS
                     DAISTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGHAFTFFSPFLG
                     WLGVFLTGSDTSSNALFAALQATAAQQIGVSDLLLVAANTTGGVTGKMISPQSIAIAC
                     AAVGLVGKESDLFRFTVKHSLIFTCMVGVITTLQAYVLTWMIP"
     gene            2822..3598
                     /gene="lldR"
                     /locus_tag="OQQ19_003923"
     CDS             2822..3598
                     /gene="lldR"
                     /locus_tag="OQQ19_003923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LldR"
                     /protein_id="HCS1805363.1"
                     /translation="MIVLPRRLSDEVADRVRALIDEKNLEAGMKLPAERQLAMQLGVS
                     RNSLREALAKLVSEGVLLSRRGGGTFIRWRHDTWSEQNIVQPLKTLMADDPDYSFDIL
                     EARYAIEASTAWHAAMRATPGDKEKIQLCFEATLSEDPDIASQADVRFHLAIAEASHN
                     IVLLQTMRGFFDVLQSSVKHSRQRMYLVPPVFSQLTEQHQAVIDAIFAGDADGARKAM
                     MAHLSFVHTTMKRFDEDQARHARITRLPGEHNEHSREKNA"
     gene            3595..4785
                     /gene="lldD"
                     /locus_tag="OQQ19_003924"
     CDS             3595..4785
                     /gene="lldD"
                     /locus_tag="OQQ19_003924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent L-lactate dehydrogenase"
                     /protein_id="HCS1805364.1"
                     /translation="MIISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSE
                     VALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADTHGIP
                     FTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPT
                     PGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLE
                     DYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHG
                     GRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLY
                     ALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQGLGKELPAALAPMAK
                     GNAA"
BASE COUNT         1054 a         1272 c         1301 g         1167 t
ORIGIN      
        1 gagcattact aacctgaaca atcaggtcac taatctggat actcgcgtta ctaatatcga
       61 aaacggtatt ggcgacattg tcaccaccgg tagcaccaag tacttcaaga ccaacaccga
      121 tggcgtagat gccaacgccc agggtaaaga tagcgttgct attggttctg gttccattgc
      181 tgccgctgac aacagcgtcg cactgggtac cggttccgtt gcagaggaag aaaatacaat
      241 ctctgtaggt tcttctacta accaacgccg tatcaccaac gtagctgccg gtgttaatgc
      301 caccgatgcg gttaacgtgt cgcagctgaa atcttctgaa gcaggcggcg tgcgctacga
      361 caccaaagct gatggttcta tcgactatag caatatcacc ctcggtggtg gcaacggcag
      421 tacgactcgt atcagcaacg tctccgctgg cgtcaacaac aacgacgcgg tgaactacgc
      481 gcagttgaag caaagcgtgc aggaaacgaa gcaatacacc gatcagcgga tggttgagat
      541 ggataacaaa ctgtctaaaa ctgaaagcaa gttgagcggt ggtatcgctt ctgcaatggc
      601 aatgaccggt ctgccgcagg cttatacacc gggtgccagc atggcttcta ttggtggcgg
      661 tacttacaac ggtgaatcgg cagttgcttt aggtgtatcg atggtgagcg ccaatggtcg
      721 ttgggtctac aaattacaag gtagtaccaa tagccagggt gaatactccg ccgcactcgg
      781 tgccggtatt cagtggtaat gatccattaa gttagtgtga ctaagggcaa acgccaaatt
      841 gcctgatgcg ttacgcgcat caggcaagat aaggcgctcc gggtcaacaa tctaagggca
      901 attctctgat gaggattgcc cttttcttta ccagacatct ccccccacaa gaattggccc
      961 taccaattct tcgcttatct gacctctggt tcacaattcc ccaattaaaa ctcacatcaa
     1021 tattgccaat acacaacatt tagttaacca ttcattgtca ttatccctac acaacacaat
     1081 tggcagtgcc acttttacac aacgtgtgac aaggagatga gcaacagact cattacacga
     1141 tgtgcgtgga ctccaggaga cctgcaatga atctctggca acaaaactac gatcccgccg
     1201 ggaatatctg gctttccagt ctgatagcat cgcttcccat cctgtttttc ttctttgcgc
     1261 tgattaagct caaactgaaa ggatacgtcg ccgcctcatg gacggtagca atcgcccttg
     1321 ccgtggcttt gctgttctat aaaatgccgg tcgctaacgc gctggcctcg gtggtttatg
     1381 gcttcttcta tggtttgtgg cccatcgcgt ggatcattat tgcagcagtg ttcgtctata
     1441 agatctcggt gaaaaccggg cagtttgaca tcattcgctc gtctattctt tcgataaccc
     1501 ctgaccagcg tctgcaaatg ctgatcgtcg gtttctgttt cggcgctttc cttgaaggag
     1561 ccgcaggctt tggcgcaccg gtagcaatta ccgccgcatt gctggtcggc ctgggtttta
     1621 aaccgctgta cgccgccgga ctgtgcctga ttgttaacac cgcgccagtg gcatttggcg
     1681 cgatgggcat tccaatcctg gttgccggac aagtaacagg catcgacagt tttgagattg
     1741 gccagatggt ggggcgtcag ctaccgttta tgaccattat cgtgctgttc tggatcatgg
     1801 cgattatgga cggctggcgc ggtatcaaag agacgtggcc tgcggtcgtg gttgcgggcg
     1861 gctcgtttgc catcgctcag taccttagct ccaacttcat tgggccggag ctgccggaca
     1921 ttatctcttc gctggtatca ctgctctgcc tgacgctgtt cctcaaacgc tggcaaccag
     1981 ttcgcgtatt ccgcttcggt gacttggggg cgtcacaggt tgatatgacg ctggcccaca
     2041 ccggttacac cgcgggtcag gtgttacgtg cctggacacc gttcctgttc ctgaccgcta
     2101 ccgtaacact gtggagcatc ccgccgttta aagccctgtt cgcatcgggt ggtgcgctgt
     2161 atgagtgggt gatcaacatt ccggtgccgt acctcgataa actggttgcc cgtatgccac
     2221 cagtggtcag cgaggctaca gcctatgccg ccgtgtttaa gtttgactgg ttctctgcca
     2281 ccggcaccgc cattctgttt gctgcactgc tctcgattgt ctggctgaag atgaaaccgt
     2341 ctgacgctat cagcaccttc ggcagcacgc tgaaagaact ggctctaccc atctactcca
     2401 tcggcatggt gctggcgttc gcctttatct cgaactattc cggactgtca tcaacactgg
     2461 cactggcact ggcgcacacc ggtcatgcat tcaccttctt ctcgccgttc ctcggctggc
     2521 tgggggtatt cctgaccggg tcggatacct catctaacgc cctgttcgcc gcgctgcaag
     2581 ccaccgcagc acaacaaatt ggcgtctctg atctgttgct ggttgccgcc aataccaccg
     2641 gtggcgtcac cggtaagatg atctccccgc aatctatcgc tatcgcctgt gcggcggtag
     2701 gcctggtggg caaagagtct gatttgttcc gctttactgt caaacacagc ctgatcttca
     2761 cctgtatggt gggcgtgatc accacgcttc aggcttatgt cttaacgtgg atgattcctt
     2821 aatgattgtt ttacccagac gcctgtcaga cgaggttgcc gatcgtgtgc gggcgctgat
     2881 tgatgaaaaa aacctggaag cgggcatgaa gttgcccgct gagcgccaac tggcgatgca
     2941 actcggcgta tcacgtaatt cactacgcga ggcgctggca aaactagtga gcgaaggcgt
     3001 gctgctcagt cgacgcggcg gcgggacgtt tattcgctgg cgtcatgaca catggtcgga
     3061 gcaaaacatc gtccagccgc taaaaacgct gatggccgat gatccggatt acagtttcga
     3121 tattctggaa gcccgctacg ccattgaagc cagcaccgca tggcatgcgg caatgcgcgc
     3181 cacacctggc gacaaagaaa agattcagct ttgctttgaa gcaacgctaa gtgaagaccc
     3241 ggatatcgcc tcacaagcgg acgttcgttt tcatctggcg attgccgaag cctcacataa
     3301 catcgtgctg ctgcaaacca tgcgcggttt cttcgatgtc ctgcaatcct cagtgaagca
     3361 tagccgtcag cggatgtatc tggtgccacc ggttttttca caactgaccg aacaacatca
     3421 ggctgtcatt gacgccattt ttgctggtga tgccgacggg gcgcgtaaag caatgatggc
     3481 gcaccttagt tttgttcaca ccaccatgaa acgattcgat gaagatcagg ctcgccacgc
     3541 acggattacc cgcctgcccg gtgagcataa tgagcattcg agggagaaaa acgcatgatt
     3601 atttccgcag ccagcgatta tcgcgccgca gcgcaacgca ttctgccgcc gttcctgttc
     3661 cactatatgg atggtggtgc atattctgaa tacacgctgc gccgcaacgt ggaagatttg
     3721 tcagaagtgg cactgcgcca gcgtattctg aaaaacatgt ccgacttaag cctggaaacg
     3781 acgctgttta atgagaaatt gtcgatgccg gtagcactgg caccggtggg tttgtgtggc
     3841 atgtatgcgc gtcgtggcga agttcaggca gccaaagcgg cggacacgca tggcattccg
     3901 tttactctct cgacggtttc cgtttgcccg attgaagaag tcgcgccagc catcaagcgc
     3961 ccaatgtggt tccagcttta tgtactgcgc gatcgcggct ttatgcgtaa cgcgctggag
     4021 cgagcaaaag cagcgggttg ttcgacgctg gttttcaccg tggatatgcc gacaccgggc
     4081 gcacgctacc gtgatgcgca ttcaggtatg agcggcccaa atgcggcaat gcgccgctac
     4141 ttgcaggcgg tgacgcatcc gcaatgggcg tgggatgtgg gcctgaacgg tcgtccacat
     4201 gatttaggta atatctcagc ttatctcggc aaaccaaccg gactggaaga ttacatcggc
     4261 tggctgggga ataacttcga tccgtccatc tcatggaaag accttgagtg gatccgcgat
     4321 ttctgggatg gcccgatggt gatcaaaggg atcctcgatc cggaagatgc gcgcgatgca
     4381 gtacgttttg gtgctgatgg aattgtggtt tctaaccacg gtggccgcca gctggacggt
     4441 gtactctctt ccgctcgtgc gttgcccgct attgcagatg cggtgaaagg tgatatcgcc
     4501 attctggcgg atagcggaat tcgtaacggg cttgatgtcg tgcgtatgat tgcgctcggt
     4561 gccgacaccg tactgctggg tcgtgctttc ctgtatgcgc tggcaacagc gggccaggcg
     4621 ggtgtagcta acctgctaaa tctgatcgaa aaagagatga aagtggcgat gacgctgact
     4681 ggcgcgaaat cgatcagtga aattacgcaa gattcgctgg tgcaagggct gggtaaagag
     4741 ttgcctgcgg cactggctcc catggcgaaa gggaatgcgg catagtcgtt tgcg
//
LOCUS       DAJVSY010000223         4673 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.225, whole genome shotgun sequence.
ACCESSION   DAJVSY010000223 DAJVSY010000000
VERSION     DAJVSY010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4673
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.225"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            60..1859
                     /gene="cysJ"
                     /locus_tag="OQQ19_003925"
     CDS             60..1859
                     /gene="cysJ"
                     /locus_tag="OQQ19_003925"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent assimilatory sulfite reductase
                     flavoprotein subunit"
                     /protein_id="HCS1805365.1"
                     /translation="MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVL
                     NQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYK
                     FKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEF
                     FCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSV
                     ATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDAL
                     GVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYAT
                     LTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIAS
                     SQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPAN
                     PETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKD
                     GVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQAL
                     LEVIAEFGGMDIEAADEFLSELRVERRYQRDVY"
     gene            1859..3571
                     /gene="cysI"
                     /locus_tag="OQQ19_003926"
     CDS             1859..3571
                     /gene="cysI"
                     /locus_tag="OQQ19_003926"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001290736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory sulfite reductase (NADPH)
                     hemoprotein subunit"
                     /protein_id="HCS1805366.1"
                     /translation="MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGF
                     KGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPHHAMLLRCRLPGGVITTKQWQAIDKF
                     AGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSN
                     PYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKT
                     TVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGY
                     LPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPI
                     RPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRI
                     TANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERF
                     LPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGN
                     RIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPAR
                     DLWD"
     gene            3646..4380
                     /gene="cysH"
                     /locus_tag="OQQ19_003927"
     CDS             3646..4380
                     /gene="cysH"
                     /locus_tag="OQQ19_003927"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase"
                     /protein_id="HCS1805367.1"
                     /translation="MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNL
                     PGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLK
                     VYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ
                     SGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTT
                     RKWEPGMSEEETRFFGLKRECGLHEG"
BASE COUNT         1153 a         1218 c         1334 g          968 t
ORIGIN      
        1 tgttttatgg gcgctgacag ggcgcagaaa cagctttgct tactggaaca taacgacgca
       61 tgacgacaca ggtcccacct tccgcgttgc ttccgttgaa cccggagcaa ctggcacgcc
      121 ttcaggcggc cacgaccgat ttaacgccta cccagcttgc ctgggtttct ggctatttct
      181 ggggcgtact caatcagcag cctgctgcgc ttgcagcgac gccagcgcca gccgcagaaa
      241 tgccgggtat aactattatc tccgcctcgc aaaccggcaa tgcgcgccgg gttgctgaag
      301 cattacgcga tgatttatta gcagcaaaac tgaacgttaa gctggtgaac gcgggcgact
      361 ataaattcaa acaaatcgcc agcgaaaaac tgctcatcgt agtgacgtca acgcaagggg
      421 aaggggaacc gccggaagaa gccgtcgcgc tgcataagtt cctgttctcc aaaaaagcgc
      481 caaagctgga aaacaccgcg tttgccgtgt ttagcctcgg cgatagctct tatgaatttt
      541 tctgccagtc cgggaaagat ttcgacagca agctggcgga actgggtggt gaacgcctgc
      601 tcgaccgtgt cgatgccgat gttgaatacc aggctgctgc cagcgagtgg cgcgcccgcg
      661 tggttgatgc gcttaaatcg cgtgcgcctg tcgcggcacc ttcgcaatcc gtcgctactg
      721 gcgcggtaaa tgaaatccac accagcccgt acagcaaaga cgcgccgctg gtggctagcc
      781 tctctgttaa ccagaaaatt accgggcgta actctgaaaa agacgttcgc catatcgaaa
      841 ttgacttagg tgactcgggc ctgcgttacc agccgggtga cgcgctgggc gtctggtatc
      901 agaacgatcc ggcactggtg aaagaacttg tcgaactgct gtggctgaaa ggcgatgaac
      961 ctgtcaccgt cgagggcaaa acgttgcctc tgaacgaagc gctacagtgg cacttcgaac
     1021 tgaccgtcaa caccgccaac attgttgaga attacgccac gcttacccgc agcgaaacac
     1081 tgctgccgct ggtgggcgat aaagcgaagt tacagcatta cgccgcgacg acgccgattg
     1141 tcgacatggt gcgtttctct ccggcgcaac tggatgccga agcgctgatt aatctgctgc
     1201 gcccgctgac cccgcgcctg tattccatcg cctcctcgca ggcggaagtc gagaacgaag
     1261 tacacgtcac cgttggtgtg gtgcgttacg acgtggaagg ccgagcccgt gccggtggtg
     1321 cctccagctt cctcgcggat cgcgtggaag aagagggcga agtccgcgta tttatcgaac
     1381 ataacgataa ctttcgcctg cccgctaacc cggaaacccc ggtgattatg attggcccag
     1441 gcaccggtat tgcgccgttc cgcgccttta tgcagcaacg cgccgccgac gaagcgccag
     1501 gtaaaaactg gctgttcttt ggtaatccgc actttacgga agacttcctg taccaggtgg
     1561 agtggcagcg ctacgtcaaa gatggcgtgc tgacacgtat cgatcttgcc tggtcgcgcg
     1621 accaaaaaga aaaagtttac gtacaagaca aactgcgcga acagggcgcg gagctgtggc
     1681 gctggatcaa tgatggtgcc cacatttatg tctgcggcga cgctaatcgc atggcgaaag
     1741 acgttgagca ggcacttctg gaagtgattg ccgaatttgg tggcatggac atcgaagcgg
     1801 cggatgaatt tttaagtgag ctgcgcgtag agcgccgtta tcagcgagat gtctactaat
     1861 gagcgaaaaa catccagggc ctttagtggt cgaaggaaaa ctgacagacg ccgagcgcat
     1921 gaagcttgaa agcaactacc tgcgcggcac cattgcggaa gatttaaacg acggtctgac
     1981 cggcggcttt aagggcgaca acttcctgct gatccgcttc cacggcatgt atcagcagga
     2041 tgaccgcgac atccgcgccg aacgtgctga acagaagctg gagccgcacc acgcgatgct
     2101 gcttcgctgt cgtctgccgg gtggggtgat taccactaaa cagtggcagg cgatcgacaa
     2161 atttgccggt gaaaacacca tctatggcag cattcgcctg accaaccgcc agacattcca
     2221 gttccacggc attctgaaaa agaacgtcaa accggtgcac cagatgctgc actcggtcgg
     2281 tcttgatgcg ctggcgacag ctaacgacat gaaccgtaac gtactctgca cctcgaaccc
     2341 ttacgagtcg cagctgcacg cggaagcgta cgagtgggcg aagaagattt ctgagcatct
     2401 gttgcctcgt acccgcgcgt atgcggagat ctggctcgac caggaaaaag tcgccactac
     2461 tgatgaagaa ccgatccttg gtcagaccta cctgccgcgt aagttcaaaa ccacggtagt
     2521 gatcccgccg cagaacgata tcgatctgca tgccaacgac atgaacttcg tggcaatcgc
     2581 cgaaaacggc aagctggtag gcttcaacct gctggtgggc ggtgggcttt ctatcgaaca
     2641 cggcaacaag aaaacctacg cccgcacggc gagcgagttt ggctatctgc cgctggagca
     2701 tacgctggcg gtggccgaag ctgtcgtgac aactcagcgt gactggggta accgaaccga
     2761 tcgtaaaaat gccaaaacca aatacacgct ggagcgcgtg ggggttgaga cgtttaaagc
     2821 ggaagtggag cgtcgcgcgg ggatcaaatt tgaaccgatc cgtccatatg agttcaccgg
     2881 acgaggcgat cgtattggct gggttaaggg cattgatgat aactggcacc tgacgctgtt
     2941 tatcgaaaat ggtcgcatcc ttgattatcc ggggcgtccg ctgaaaaccg gcctgctgga
     3001 gatcgcgaag atccacaaag gcgatttccg cattacggcg aaccagaatc tgatcatcgc
     3061 cggtgtaccg gaaagcgaga aagcgaagat cgagaagatc gccaaagaga gcgggttaat
     3121 gaatgccgtc acgccgcagc gtgaaaactc gatggcctgc gtgtcattcc cgacttgccc
     3181 gctggcgatg gcggaagcag agcgtttcct gccgtctttt atcgacaaca tcgataattt
     3241 aatggcgaaa catggtgtca gcgatgagca tatcgtgatg cgtgtaacag gctgcccgaa
     3301 cggttgtggt cgcgcgatgc tggcggaagt gggcctggtg ggtaaagcgc cgggtcgcta
     3361 caacctgcat cttggcggca accgcattgg gacacgtatc ccacggatgt ataaagaaaa
     3421 catcaccgag ccggaaatcc tggcgtcgct tgatgaactg atagggcgct gggcgaaaga
     3481 gcgcgaagcg ggtgaaggct tcggcgactt tacggtgcgt gcgggcatca ttcgcccggt
     3541 gctcgatccg gcgcgcgatt tgtgggatta accatcagcc cggtcttgta ggcctgataa
     3601 gaacgcgtga gcgtcgcatc aggcaaggca aacagtgagg aatctatgtc caaactcgat
     3661 ctaaacgccc tgaacgaact gccgaaggta gatcgcattc tggcgctggc ggaaactaac
     3721 gccgaactgg aaaaactgga cgctgaaggc cgcgtagcct gggcgctgga taatctgccc
     3781 ggtgaatatg tactttcttc cagctttggc attcaggcgg cggtgagcct gcatctggtg
     3841 aatcaaattc gcccggatat tccggtgatc ctcaccgata cgggttactt gttcccggaa
     3901 acctaccgct ttattgacga gttaacggac aaactcaagc tcaacctgaa agtgtaccgt
     3961 gctaccgaaa gcgcagcctg gcaggaagca cgctacggaa aactgtggga gcagggcgtt
     4021 gaaggcattg aaaagtacaa tgacatcaac aaagtcgaac cgatgaaccg ggctctgaaa
     4081 gaacttaacg cgcaaacctg gtttgctggc ctgcgccgtg aacaatccgg cagtcgcgcc
     4141 aatttaccgg tgctggcaat tcagcgtggc gtatttaaag tgctgccgat tatcgactgg
     4201 gataaccgaa ctatttatca gtacctgcaa aaacatggcc tgaaatatca cccattatgg
     4261 gatgaaggat atttatcggt cggtgatacc catacaaccc gtaaatggga acctggcatg
     4321 tcggaagaag aaacacgttt ctttggctta aaaagggaat gtggattgca cgaagggtaa
     4381 atattgccgg ataaattaaa cgcctctgtc agaaatgatg ggggcgtttt tattttgcga
     4441 gcagtattcc tgattttaaa cgtgaacgcc gctggaagaa ttatcaggta tagaatggcg
     4501 tcgggtgctt gaggctgtct ggcgttaagc attcgcgagg ttccagatgg acaaaagccc
     4561 caggcgatat ttctatcaac ctgaggccag cgttcgaacc caaacaattc gaatgttagt
     4621 ctcttctttg cagggaggca agacatgctg acaaaatatg cccttgtggc aat
//
LOCUS       DAJVSY010000224         4662 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.226, whole genome shotgun sequence.
ACCESSION   DAJVSY010000224 DAJVSY010000000
VERSION     DAJVSY010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4662)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4662)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4662
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.226"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..755)
                     /locus_tag="OQQ19_003928"
     CDS             complement(<1..755)
                     /locus_tag="OQQ19_003928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416329.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CSS-motif domain-containing protein"
                     /protein_id="HCS1805368.1"
                     /translation="MQKAQRIIKTYRRNRMIVCTICALVTLASTLSVRFISQRNLNQQ
                     RVVQFANHAVEELDKVLLPLQAGSEVLLPLIGLPCSVAHLPLRKQAAKLQTVRSIGLV
                     QDGTLYCSSIFGYRNVPVVDILAELPAPQPLLRLTIDRALIKGSPVLIQWTPAAGSSN
                     AGVMEMINIDLLTAMLLEPQLQQISSASLTVDKRHLLYGNGLVDSLPQPEDNENYQVS
                     SQRFPFTINVNGPGATALAWHYLPTQLPLAVLL"
     gene            complement(886..2250)
                     /gene="sdaA"
                     /locus_tag="OQQ19_003929"
     CDS             complement(886..2250)
                     /gene="sdaA"
                     /locus_tag="OQQ19_003929"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HCS1805369.1"
                     /translation="MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDSVTR
                     VAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDIDSIPGFIRDVEERERLLLAQGR
                     HEVDFPRDNGMRFHNGNLPLHENGMQIHAYNGDEVVYSKTYYSIGGGFIVDEEHFGQD
                     AANEVSVPYPFKSATELLAYCNETGYSLSGLAMQNELALHSKKEIDEYFAHVWQTMQA
                     CIDRGMNTEGVLPGPLRVPRRASALRRMLVSSDKLSNDPMNVIDWVNMFALAVNEENA
                     AGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFMAAGAIGALYKMNASISG
                     AEVGCQGEVGVACSMAAAGLAELLGGSPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPC
                     IERNAIASVKAINAARMALRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIK
                     VQCD"
     gene            complement(2434..3012)
                     /locus_tag="OQQ19_003930"
     CDS             complement(2434..3012)
                     /locus_tag="OQQ19_003930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HCS1805370.1"
                     /translation="MEYRSLTLDDFLSRFQLLRPQINRETLNHRQAAVLIPIVRRPQP
                     GLLLTQRSIHLRKHAGQVAFPGGAVDDTDASVIAAALREAEEEVAIPPSAVEVIGVLP
                     PVDSVTGYQVTPVIGIIPPDLPYRASEDEVSAVFEMPLAQALHLGRYHPLDIYRRGDS
                     HRVWLSWYEQYFVWGMTAGIIRELALQIGVKP"
     gene            complement(3016..4377)
                     /gene="pabB"
                     /locus_tag="OQQ19_003931"
     CDS             complement(3016..4377)
                     /gene="pabB"
                     /locus_tag="OQQ19_003931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component 1"
                     /protein_id="HCS1805371.1"
                     /translation="MKTLSPAVITLPWRQDAAEFYFSRLSHLPWAMLLHSGYADHPYS
                     RFDIVVAEPICTLTTFGKETVVSESEKRTTTTDDPLQVLQQVLDRADIRPTHNEDLPF
                     QGGALGLFGYDLGRRFESLPEIAEQDIVLPDMAVGIYDWALIVDHQRHTVSLLSHNDV
                     NARRAWLESQQFSPQEDFTLTSDWQSNMTREQYGEKFRQVQEYLHSGDCYQVNLAQRF
                     HATYSGDEWQAFLQLNQANRAPFSAFLRLEQGAILSLSPERFILCDNSEIQTRPIKGT
                     LPRLPDPQEDSKQAEKLANSAKDRAENLMIVDLMRNDIGRVAVAGSVKVPELFVVEPF
                     PAVHHLVSTITARLPEQLHASDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWCG
                     SIGYLSFCGNMDTSITIRTLTAINGQIYCSAGGGIVADSQEEAEYQETFDKVTKILRQ
                     LEK"
     gene            4451..4630
                     /locus_tag="OQQ19_003932"
     CDS             4451..4630
                     /locus_tag="OQQ19_003932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaH family protein"
                     /protein_id="HCS1805372.1"
                     /translation="MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRAN
                     HSGERIVARFEDEDE"
BASE COUNT         1170 a         1198 c         1212 g         1082 t
ORIGIN      
        1 cttagcagca ccgccagcgg taattgtgtt ggaagatagt gccatgccag cgccgtagcc
       61 cccggaccat taacgttaat ggtaaaagga aagcgttgcg aagaaacctg atagttttca
      121 ttgtcttcag gttgcggaag ggaatctacc agcccattac catagagcaa atgccgtttg
      181 tccaccgtca ggctggcgct actgatttgc tgcagttgtg gttcaaggag cattgccgtc
      241 agtaagtcga tgttaatcat ctccatgacc ccagcattgc tactgcccgc tgcaggcgtc
      301 cattgaatca aaaccggact gcctttaatc agggcacggt cgatcgtcag gcgtaaaagt
      361 ggttgcggtg caggaagttc agccagaatg tccacgacgg gcacattgcg ataaccaaaa
      421 atgctggagc aatagagtgt gccgtcttgc accaggccaa tggatcgcac agtttggagt
      481 tttgccgcct gtttacgtaa tggcaaatgg gcgacagagc agggcagacc aatcagcgga
      541 agcaagactt cgctacctgc ctgtagggga agcagtactt tatctaattc ctctacagcg
      601 tgattggcga attgtactac ccgttgttga tttaagttac gctgtgaaat aaatcgcacg
      661 ctcagggtcg aagcgagcgt aacgagtgcg caaatcgtac aaacaatcat tcgattacgt
      721 cgataggttt taatgatccg ttgtgctttt tgcatgcggg ccaccctgta agcgtatggc
      781 gacaaacgcc tgacgcaaca gtggatgtgt agtggggaat attacagcag acgagaaagc
      841 gggtataaat tcgcccatcc gttgcagatg ggcgagtaag aagtattagt cacactggac
      901 tttgattgcc agaccaccgc gtgaggtttc gcggtatttg gcgttcatgt ccttaccggt
      961 ttcgtacatc gtttcgatga ccttatccag cgagacgcgc ggtgcactgg tgcggcgcag
     1021 agccatccgt gcggcgttaa tcgccttcac agaggcaatg gcattacgct caatgcacgg
     1081 cacctgaacc tgccctgcaa ccgggtcgca ggttaaacca aggttgtgtt ccatgccaat
     1141 ttccgccgcc acgcaaacct gttccgggct accgcccagc agttctgcaa gacccgcagc
     1201 agccattgaa caggcaacac ccacttcgcc ctggcaacca acttccgcac cggaaataga
     1261 ggcgttcatt ttatacaatg caccaatcgc gcccgctgcc ataaagtaac gggtatagat
     1321 gtccgggctg accgattcaa taaagtggtc atagtaagcc agcactgccg gaacgatacc
     1381 gcaggcaccg ttggttggcg cagttaccac acgaccaccg gcggcgtttt cttcgttaac
     1441 tgccagcgca aacatgttta cccagtcaat gacattcatc ggatcgttag acagtttatc
     1501 gctggaaacc agcatccggc gcagggcaga cgcacgacgt ggcacgcgca gcgggcctgg
     1561 cagtacacct tcggtgttca tcccgcgatc gatacatgcc tgcatggttt gccagacatg
     1621 cgcgaaatac tcgtcgatct ctttcttgct gtgcagcgcc agttcgttct gcatagcgag
     1681 accagacagc gaatagccgg tttcattaca gtacgcgagc agttcggtgg cagatttgaa
     1741 cggatacggc acgctcactt cgttggcagc atcctgacca aagtgttctt catcgacgat
     1801 aaaaccgccg ccgatggaat aataagtttt gctgtagacg acttcatcgc cgttataggc
     1861 gtggatttgc ataccgtttt catgcagcgg caggttgccg ttatgaaaac gcatcccgtt
     1921 gtcgcgcggg aaatccactt catgccgtcc ctgtgccagc agcagacgtt cgcgctcttc
     1981 tacgtcgcga ataaaaccgg gaatactgtc gatatccacg gtggcaggtt cgttacctgc
     2041 aagacccata ataatggcga tatcggtgtg gtggccttta cccgtcagcg acagtgaacc
     2101 ataaacgtcc acggcaacgc gagtaacgct atccagtaag cctttttcga ccagatcatc
     2161 gacgaactgt ttacccgcct tcataggccc tacggtatgg gaagatgagg gaccaatccc
     2221 caccttaaac atgtcgaata gactaatcac gataatactc ctgacaaggt gactggactt
     2281 ccagtaacga actaataaca gcgcatagtg taagagggaa cgcggcgact ggcttaacta
     2341 ttcacatgaa ttaaactaat caaaaaccgc gatttaacta atattgcgat gattgtctca
     2401 agtagtgttt tgtagatgta aagataagta tagtcagggt ttcacaccaa tttgcagcgc
     2461 cagctcacga attatgcctg cggtcattcc ccatacaaaa tactgttcgt accaggacag
     2521 ccatacccga tgtgaatcgc cacggcggta gatatctaaa gggtgataac gacccagatg
     2581 taatgcctgg gcgagcggca tttcaaacac cgccgagact tcatcttcac tggcgcgata
     2641 cggcagatcg ggcgggataa tgccgatcac tggggttacc tgatagccag ttacgctatc
     2701 gacgggcggc agcacgccga taacttcaac ggcggaaggc ggtatagcga cctcttcttc
     2761 agcttcgcgc agcgcggcgg cgataactga tgcgtccgtg tcatcgactg cacctccagg
     2821 gaatgccact tgtccagcgt gtttacgcag atgaattgaa cgctgagtca gcaacaaccc
     2881 cggttgcggt cgacggacga tggggattaa cacggcagcc tgacgatgat ttagggtttc
     2941 ccggttaatt tgcgggcgca aaagttgaaa gcgagataaa aaatcatcaa gcgtcaggct
     3001 acggtattcc acgtcttact tctccagttg gcgtaatatc ttagtaactt tatcaaaagt
     3061 ttcctgatat tccgcttctt cctggctatc ggcgacaatt ccaccgcccg cagagcagta
     3121 tatttgtccg ttaatggcag tcagcgtgcg gatagtaatg ctggtatcca tgttgccgca
     3181 aaagctcaaa tagccaatgc tgccgcacca ggcattacgt cgctgcggtt ccagttcgtc
     3241 gataatttcc atagcccgta ctttcggagc cccggttatt gagccaccag gaaaagctgc
     3301 gcgcagcaga tcgctggcgt gtaactgttc tggtagtcgc gccgttatag tgctgaccag
     3361 atgatgcacg gcagggaagg gttccaccac gaagagctct ggtactttta ccgaaccggc
     3421 tacggcaaca cgaccgatat cattacgcat taaatcgaca atcatcagat tttcggcacg
     3481 atctttcgct gagttcgcca gtttttctgc ttgtttgcta tcttcctgag gatcgggcag
     3541 gcgtggtagc gtgcctttaa tcgggcgggt ctggatttca ctattatcac aaagaataaa
     3601 ccgctctggc gaaaggctta aaattgcacc ctgttcaaga cgtaaaaaag cgctaaatgg
     3661 cgcgcggttg gcctgattaa gctgaaggaa tgcctgccat tcatcgccag aataggtcgc
     3721 atgaaaacgc tgggcgagat tcacctgata gcaatcaccg ctgtgcagat attcctgtac
     3781 ctggcgaaat ttttcgccgt actgctcgcg ggtcatattg gattgccagt cggaagtgag
     3841 cgtgaaatct tcctgcggcg agaattgctg gctttccagc caggcccgac gggcattgac
     3901 atcattatga ctcagcaaag aaactgtatg acgctggtgg tcgacaatga gcgcccaatc
     3961 gtagataccc actgccatat ccggcagaac gatatcttgt tccgcaattt ctggcagtga
     4021 ctcaaaacgg cggcccagat cgtagccaaa caaccccagt gcgccgccct gaaatggcaa
     4081 atcttcgtta tgcgttgggc gaatgtctgc gcgatccagc acctgctgga gcacctgtag
     4141 cgggtcatca gtggtcgttg tgcgtttttc gctttcacta acaacggttt ctttaccgaa
     4201 agtggttaaa gtgcaaatcg gctcggcgac cacaatatca aagcggctat acggatgatc
     4261 ggcatagccg gagtgtaaaa gcatcgccca cggcaggtgg cttaagcggg agaaataaaa
     4321 ttcagcggcg tcctgacgcc agggtaaagt aatcacagcg ggagataacg tcttcatcag
     4381 tcctgactct actggctatg tgccgggtag catgaaataa ttagcgccaa caatttagca
     4441 ggagttaaca atgtttgcag gtttaccttc actcacccat gaacagcagc aaaaagctgt
     4501 cgagcggatc caggaactga tggcacaagg gatgagcagc ggccaggcaa tcgcgctggt
     4561 ggcagaagag ctgcgtgcca accactccgg cgagcgaatc gtggcgcgtt ttgaggatga
     4621 agacgagtaa cacactaatc cgtatcgatt tcgttataga ag
//
LOCUS       DAJVSY010000225         4588 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.227, whole genome shotgun sequence.
ACCESSION   DAJVSY010000225 DAJVSY010000000
VERSION     DAJVSY010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4588)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4588)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4588
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.227"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            256..618
                     /gene="queD"
                     /locus_tag="OQQ19_003933"
     CDS             256..618
                     /gene="queD"
                     /locus_tag="OQQ19_003933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708563.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HCS1805373.1"
                     /translation="MSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEV
                     DPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLL
                     SAVMVKETCTAGCIYRGE"
     gene            696..1964
                     /locus_tag="OQQ19_003934"
     CDS             696..1964
                     /locus_tag="OQQ19_003934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HCS1805374.1"
                     /translation="MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNL
                     SGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRA
                     RFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVL
                     AERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGA
                     FLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVP
                     EGGLHSMPVQYAGNGWQLVGDALRSCVNTGISVRGMGMALTGAQAAQTLISACQHREP
                     QNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPV
                     PPLRQLFWRHLRRHGLWHLAGDVIRSLRCL"
     gene            1955..2215
                     /locus_tag="OQQ19_003935"
     CDS             1955..2215
                     /locus_tag="OQQ19_003935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HCS1805375.1"
                     /translation="MSVAHNLWRVADAPHIVPADSVERQMVQWLINACPAGLFSLTPE
                     GDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG"
     gene            2232..2807
                     /locus_tag="OQQ19_003936"
     CDS             2232..2807
                     /locus_tag="OQQ19_003936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate responsive antiterminator"
                     /protein_id="HCS1805376.1"
                     /translation="MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTIS
                     NIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGF
                     FCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVC
                     DEEDACNAINAGVVALSTTNTGVWTLAKKLL"
     gene            complement(2955..3815)
                     /locus_tag="OQQ19_003937"
     CDS             complement(2955..3815)
                     /locus_tag="OQQ19_003937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HCS1805377.1"
                     /translation="MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQV
                     LDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHW
                     GNALTATLQTEKRPLCLSLARQAGAAKNATLPSGIQQLNIVPGALPDWLVSTEDLKNV
                     TRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISG
                     HLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEA
                     LVTNIHADCQ"
     gene            complement(3812..>4588)
                     /locus_tag="OQQ19_003938"
     CDS             complement(3812..>4588)
                     /locus_tag="OQQ19_003938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HCS1805378.1"
                     /translation="NILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQ
                     AAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEF
                     VARHIAEWQHQNPLDLIITGSQSSEGQNGQTPFLLAEMLGWTCFTQVERFTLDALFIT
                     LEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAM
                     QCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP"
BASE COUNT         1055 a         1234 c         1167 g         1132 t
ORIGIN      
        1 agaagataag gttaacgggg tgaacggtgt ggattaaaga cgggatagcg ataactaata
       61 accaaatcga ctaacctgtt ttagcaatag tctttaacaa caaaatagat taaccaaccc
      121 aatgaaaaac aaatgaattt agccaatcat taagataaat cagcgatttt gcgcaacaaa
      181 gtcgttttag ataatgcgaa aaaacagcct ttccggtact ctacggcggt tttatcgtcc
      241 tgtagagaaa ttatgatgtc caccacgtta tttaaagatt tcaccttcga agccgctcac
      301 cgcttaccac acgtcccgga agggcataaa tgtggtcgcc tgcacgggca ttcctttatg
      361 gtgcgactgg aaattaccgg ggaagtcgat ccgcatacgg gctggattat cgatttcgct
      421 gaactaaaag cggcgtttaa gccaacttat gagcgcctcg atcaccatta tctcaatgat
      481 attccaggtc tggaaaaccc aactagcgaa gttttagcaa aatggatttg ggatcaggtt
      541 aaacccgttg tgccgctgtt aagtgcggtg atggtaaaag aaacctgcac cgctggttgt
      601 atctatcgcg gcgaatgata agagtgtgtc ggcggtcaat ttcccttaag taacgctatg
      661 ttagggtatt gtgttcagga tatctggggc atgacatgga agacgactgc gacattatta
      721 ttattggtgc cggtattgca ggcaccgctt gcgcgttacg ctgcgcgcga gcgggtttat
      781 ccgttttgtt actggaacgc gctgaaatcc ccggcagcaa aaatctttcc ggcggacggt
      841 tatataccca tgcactcgcg gaactcctcc ctcagtttca tctgaccgcg cctcttgaac
      901 gacgcatcac tcacgaaagc ctttccctgt taacgcccga tggcgtaacg acgttttcca
      961 gcttacagcc cggcggtgaa tcctggagtg tattacgtgc acggttcgat ccgtggctgg
     1021 ttgccgaagc cgaaaaagaa ggtgtcgaat gtatccccgg agcgacggtg gatgcactgt
     1081 atgaagaaaa cggcagagtc tgtggcgtta tttgtggtga cgatattctc cgcgcccgtt
     1141 atgtggtgct ggcagaaggt gccaacagcg tcctggctga acgtcacggg ttagtgactc
     1201 gtcctgctgg cgaagcgatg gcgttgggga tcaaagaagt gctgtcgctg gaaacatccg
     1261 ctattgaaga acgttttcat ctggagaata acgaaggcgc agcgttgctg ttcagcggcg
     1321 gaatctgtga tgacttaccc ggcggcgcat ttctttatac taatcaacaa acgctctcgt
     1381 tagggattgt ttgcccgctc tcttccctta cgcaaagtcg tgttccggca agcgagctgc
     1441 tgactcgctt taaagcgcat ccggcagtgc gcccgcttat caaaaacacg gaatcactgg
     1501 agtatggtgc gcatctggtg ccagaaggtg gcttgcacag tatgccggtg caatacgccg
     1561 gtaacggctg gcagctggtg ggcgatgcgt tgcgcagttg cgtcaatacc ggaatttccg
     1621 tgcgcggcat gggtatggcg ctgactggcg cgcaggcggc acaaacgctg ataagcgcct
     1681 gccagcaccg cgagccgcaa aatctgtttg cgctttatca tcacaacgta gagcgcagcc
     1741 tgctatggga tgttctacaa cgttatcagc atgttccggc gcttttgcaa cgccctggct
     1801 ggtatcgggc gtggcctgcg ttaatgcagg atatttcccg cgatttatgg gatcagggtg
     1861 ataaacctgt tccaccgctg cgccagttat tctggcgtca tttacgtcgt catggcctgt
     1921 ggcatctggc gggcgatgtt atcaggagtc tgcgatgtct gtagcccata atctctggcg
     1981 cgttgctgat gcgccgcaca ttgttccggc tgactccgtt gagcgtcaga tggtacaatg
     2041 gttgattaac gcctgtccgg caggtctttt ttcgctcaca ccggaaggtg acttacgcgt
     2101 tgattatcac ggctgcctgg agtgtggcac ctgccgtttg ctgtgcgacg aatccacact
     2161 acaacagtgg cgctatccgc cttccggatt cggcatcacc taccgctttg gataaataat
     2221 aaggataatt tatgcccctc ttacacctgc tccgccagaa tccggtgatt gctgccgtta
     2281 aagataatgc cagcctgcaa ctggcaatcg actctgaatg ccagtttatt tccgtgttgt
     2341 acggcaatat ctgcaccatc agtaatatcg ttaaaaagat taagaacgcc gggaaatatg
     2401 cttttattca tgttgatttg ctggaaggcg cgtcaaataa agaagtcgtg attcagtttt
     2461 tgaaactggt gaccgaggcg gacggcatta tcagtaccaa agcctcaatg ttgaaagcgg
     2521 caagagcgga aggttttttc tgtattcatc gcctgtttat tgttgattca atttcgtttc
     2581 acaacattga taagcaagtt gcgcaatcga atccggattg tattgagatc ctgccaggct
     2641 gtatgcccaa agtgctgggc tgggtgacag agaaaatccg ccaaccgctg attgccggtg
     2701 ggctggtgtg cgatgaagaa gatgcgtgta atgcgattaa cgcgggtgtc gtggcgcttt
     2761 ccaccacgaa taccggggtc tggacgttag cgaaaaaatt actttgacgg gataatcgta
     2821 accaattgaa tttggtttga tttgtaggcc gcacgccaca tccgacattc agcgcctgat
     2881 gcgacgcttg acgcgtctta tcaggcctac aagtccccag gccagaaccg taggcaggat
     2941 catccggcaa cacattattg gcaatctgcg tgaatgtttg tcaccagtgc ctccagcacc
     3001 actttccagt catcaaccac gccaacatct gcctgtgaaa ataccgcagc gctggcgtca
     3061 tgattaatcg ccaccacaaa cttgctattg cgtacgcccg ccattaacgc tgctgcgccg
     3121 gaagcgccaa caacaataca cacctcaggt gccagcaaat gtccggaaat accaatcact
     3181 ttttcagcat caacgccacc gttcatcact cgcgcccgac tgtagcccac ttcggctccc
     3241 agcttttctg ccagcatagc gatttcctgg ttatctgcct ctccgccctg ccccaccacc
     3301 agcacccgtc tggcctcagc taatgggtcg cgagtaacat ttttcagatc ctctgtgcta
     3361 accagccagt cgggaagcgc acccgggaca atgttcagtt gttgtattcc agagggcaac
     3421 gtggcgtttt tcgctgctcc cgcctgacgc gccagagaaa ggcatagcgg gcgtttttct
     3481 gtttgcagcg tcgccgttag cgcatttccc cagtgggatt tgcgcacgct tacggttgga
     3541 atatctaacg aagtcacctg gcagatgctt gcaccatgta aacgccaggc cagccgggtc
     3601 gacagttcat cgccaaacgt tcccggcgga aagagaacaa cgtccgcagg cgttcgctgc
     3661 cactgttcca ccaacgcatc cagcacctgt tccgccacta caggctgagg ttcaatctgc
     3721 cagtgcgcca gggtacaacc actgaaatcc tgcgccgcca gccagcttgc tattgcggca
     3781 ttctcctgat ttattgtcac aattgcgata ttcatggctg catcctttgg cgtaaatagt
     3841 cctgccatag cttttgagct ttttctgcta ccgtttgccc atcaatcagc gtcgctccgc
     3901 gtcgttgctc tgctcttgcc agttgcagac actgcatcgc tggcatttcg gcagcaacag
     3961 ttttacggat aatttctgct ttccccgcag ccattcgctg gcgcattccc ggtactggca
     4021 aggccacttc accgcactga cgcacggcaa tcaccgcagg caagcgaacc cggcaacaac
     4081 gcaacccatg ttcagtacgc tgttcgaggg tgataaacag cgcgtcgaga gtgaaacgct
     4141 ccacctgggt gaagcaggtc cagcccagca tttccgccag caaaaatggc gtttgcccat
     4201 tctgcccttc gctgctttgg ctgccggtaa ttatcagatc cagcggattc tgatgctgcc
     4261 attcggcaat atggcgagcg acaaattccg gcgcaaagcg cagatctgcc gccgtctcca
     4321 gcaatacagc ttcctcaaac ccaagagcca tgagatagcg cagccagtgc aatgcccgtt
     4381 catcccccat gctcaacgcg gttaaagaca tcggcgtacc gttttttctc tgcgccaaca
     4441 gcagcgcggc agcggcctgt tcatcagcac cgagtaaact tcgcagtagc gaaatatccg
     4501 gtccgctttt accctgagcc gccgcctgcc actctttttc cgccagcatt ccggcatccg
     4561 gttcggcttt aaacgctaac agaatgtt
//
LOCUS       DAJVSY010000226         4564 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.228, whole genome shotgun sequence.
ACCESSION   DAJVSY010000226 DAJVSY010000000
VERSION     DAJVSY010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4564)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4564)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4564
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.228"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            103..852
                     /locus_tag="OQQ19_003939"
     CDS             103..852
                     /locus_tag="OQQ19_003939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000093946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HCS1805379.1"
                     /translation="MSSFLLGRFLHPGVFSLCVLLPLLASATTSHISFSYAARQRMQN
                     RARLLKQYQTHLKKQASYIVEGNAESRRALRQHNREQIKQHPEWFPAPLKASDRRWQA
                     LVENNHFLSSNHLHNITEVAIHRLEQQLGKPYVWGGTRPDQGFDCSGLVFYAYNKILE
                     AKLPRTANEMYHYHRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRT
                     GETIRVSRLAEPFWQDHFLGARWILTEETIL"
     gene            1028..1525
                     /gene="rayT"
                     /locus_tag="OQQ19_003940"
     CDS             1028..1525
                     /gene="rayT"
                     /locus_tag="OQQ19_003940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="REP-associated tyrosine transposase RayT"
                     /protein_id="HCS1805380.1"
                     /translation="MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRNAIIKVKR
                     DRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHA
                     IRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDINAG
                     ERIIL"
     gene            complement(1749..3461)
                     /locus_tag="OQQ19_003941"
                     /pseudo
     CDS             complement(1749..3461)
                     /locus_tag="OQQ19_003941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001140833.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
     gene            3433..4218
                     /gene="lafU"
                     /locus_tag="OQQ19_003942"
     CDS             3433..4218
                     /gene="lafU"
                     /locus_tag="OQQ19_003942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706230.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lateral flagellar export/assembly
                     protein LafU"
                     /protein_id="HCS1805381.1"
                     /translation="MTTIKLIVNSVSKSERESIIAALHGQSIFNGGGLSPLNKISPSH
                     PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEME
                     IVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHIDAMA
                     YKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRI
                     EIMVLTKSASDTLYQYFGQHGDKVVQPLVQKLDKQQVLSQRTR"
BASE COUNT         1088 a         1202 c         1194 g         1080 t
ORIGIN      
        1 tatgaaacct caatagtaat atgcaaataa gcaattaata atcccgttta ctcctccggt
       61 cttttaaaat tctcaccttc attcagccgg tttatgtcct tcatgtcttc gttcttgctc
      121 ggcagatttc tgcatccagg cgtgttttcg ttatgcgttt tgctcccttt actcgccagc
      181 gccaccacat cacatatctc tttcagctac gccgcccgcc agcggatgca aaaccgtgcg
      241 cgtttattaa aacagtacca aacccatctg aaaaaacagg ccagctacat tgtggaaggc
      301 aatgccgaaa gcagaagggc gctacgccag cacaaccggg agcagataaa acagcatcca
      361 gaatggtttc ctgcgccgct caaggcaagt gacagacgct ggcaggcgtt ggtagaaaac
      421 aatcatttcc tcagcagcaa ccacctgcat aatatcaccg aagtggcgat tcaccgtctg
      481 gagcaacagc ttggcaagcc ttacgtctgg ggcggcacgc ggcccgatca aggcttcgac
      541 tgtagcgggt tggtttttta tgcctacaac aagatccttg aggctaagct cccgcgcacg
      601 gctaatgaga tgtatcacta ccatcgggca accattgtgg caaataacga cctgcgccgg
      661 ggagatttgc tgtttttcca tatccacagc cgtgaaattg ccgaccatat gggcgtgtat
      721 ctgggagacg gtcagtttat tgagtcgccg cgcacggggg aaaccattcg ggtaagtcgg
      781 ttagctgaac ctttctggca ggatcatttt ttgggcgcgc ggtggatatt gacggaagag
      841 acgattttgt aggacggata aggcgtttac gccgcatccg gcggtggtgc gcagatgcct
      901 gatgcgacgc tgacgcgtct tatcatgcct acaaatctgt gcgtttttgc gagccgcttt
      961 cctgttattc catcacctca ttgccgacct ttccttttct tcttaccgtt gagaaaaagg
     1021 agtcgccatg tctgaatatc gtcgttatta catcaagggg ggaacctggt ttttcacggt
     1081 gaatttacgc aatcgtcgaa gccaactctt gaccacccag taccagatgc tccgtaacgc
     1141 cattattaaa gttaagcgag acaggccttt tgaaatcaac gcctgggtcg ttttgccaga
     1201 gcatatgcat tgcatatgga cattacctga aggcgatgat gatttttcct ctcgctggcg
     1261 ggaaattaaa aagcaattta cccatgcttg tggattgaaa aatatctggc aaccacgttt
     1321 ttgggagcac gccatccgca ataccaaaga ttataggcat catgttgatt atatttatat
     1381 aaatccagta aagcatggtt gggtaaagca agtgagtgat tggccattct caacgttcca
     1441 tcgcgatgtc gcgcgagggt tatatcccat cgattgggcg ggggacgtaa cggatataaa
     1501 tgctggcgag cgtatcattt tataattatg cgcagatgcc tgatgcgacg ctggcgcgtc
     1561 ttatcatgcc tacaaacctg tgccggatcg gtaggccgga taaggcgttt atgccgcatc
     1621 cggcggttat gcgcagatgc ctgatgcgac gctggcgcgt cttatcatgc ctacaaacct
     1681 gtgctggatc ggtaggccgg ataaggcgtt cacgccgcat ccggcagttg tgcaccaatg
     1741 ctggatactt acatcaacgc ccccataatc ttcaactcca gctcgtccgg cacttcgtta
     1801 tacgacagca catgcagccc cggcgcaaac aaccttgcat aacgcgccag caaagggcgc
     1861 agctgcggtg gcaccagcag caccgggtct ttccccgccg ctttcatctg ctctttcacc
     1921 tgtggcatcg tactctggaa ctggttgagc atattcgggt ccactggcac gctgtcgagc
     1981 atcactttac cgccctgttg cgcctgattc actaggttag tcagcagatt ttccagctca
     2041 ttattcaggg tatacaccgt cagctcctgc ttgcgaacga acggatgggt aatgctgcgc
     2101 cgcagcgcca ggcgcacatc ggctgccagc agaatatgat ctttggtcac cgcgctactg
     2161 gcgaccagca cggtggcgat ggtgacgata tcgcgcaggg aaacgccttc ggtcagcagc
     2221 gcccggtaca ctttcagcaa ctggctgtaa ttgagcaccg cgcttaaatc ctccgccagg
     2281 cgcggtgcca tcgacgacaa acggttatgc aactgcgtaa tatcgtcata gttaaataaa
     2341 tcaggaatat agctgcgcac aatcttattt acatgggtag caatcacgct ggcgctgtcg
     2401 atcacctgat accccatatt cagcaccttc gctttctgcg caggctggat ccaggtcacc
     2461 ggcatcccgt acgccgggtc gttccccagc acgccgtcta tctcgccgta ggtttcgctg
     2521 gagggctggg ccatcagttt atccgccgga atatccgctt catcagcctt aatgccgttg
     2581 atgaaaatag cgtactggct gggcttaagg cggaagtttt cccgaatgcg gatctccggc
     2641 agcagcacgc cgttgccgtc ggatatcacc tgtcgcacgc cgcgaatacg ctgggtgagc
     2701 gggttgccct gggctttatc gaccagcgcc accagcttgt agccgaggct taaactgata
     2761 ggctcgataa gcggaatggt ttcccaactg acctgttgct cgctggtttc ggtgatggtg
     2821 cgggtcagcg tttcgagact tttctcttcc gcttccgccg cctgcgggcg tttgctcatc
     2881 cgccagccgg taaagccaag cagggcgctg aacagcaaaa acggcagatg tggcattccc
     2941 ggcactaccg ccagtacgaa cataattccg gtagcggtgt agagcaccga tgggcttgcc
     3001 agcaactggt tacgcacgtc atgggcgata tcgccgttgt cgctgacgcg ggtgaggata
     3061 atcgccgccg cggtggagag tagcagggaa gggatttgcg ccaccagccc gtcgccgatg
     3121 gtcatcagca catactgctg gaaggcggcg tcggcgctca ggttgtattt gaagatcccg
     3181 atacagacgc cgccgatcag gttgatcgcc agaatcatca tcccggcgat agcatccccg
     3241 cgcacaaatt tcgatgcccc gtccatcgcg ccgtagaaat cggcctcgct ggcaacatct
     3301 ttacgtcggg tttgtgcctg cgcctgattg atcaacccgg cattaagatc ggcgtcaatc
     3361 gccatctgct taccgggcat cgcatccagg gtaaagcggg ctgaaacctc ggaaatacgc
     3421 tcggcccctt tggtgacgac gataaagttg attgtcaaca gcgtcagtaa atccgagcgt
     3481 gaaagcatta tcgccgcgct gcacgggcag tcgattttta acggtggtgg gctgtcgccg
     3541 ttaaataaaa tcagcccgtc tcatccgcca aaacctgcca ccgtggcggt gccggaagaa
     3601 acggagaaaa aagcgcgcga cgtcaatgag aaaacggcgc tgctgaagaa gaaatccgcc
     3661 accgagcttg gcgagctggc aaccagtatc accaccattg cccgtgatgc gcatatggaa
     3721 gcgaatctgg agatggagat tgttccccag ggattacgcg tgctgattaa agacgaccag
     3781 aatcgcaata tgttcgaacg cggcagcgcg cagattatgc cgttctttaa aacgctgctg
     3841 gtggagctcg cgccagtttt cgactcgctc gataacaaaa ttattattac cgggcatatc
     3901 gatgcgatgg cttacaaaaa caatatctac aacaactgga acctttcggg tgaccgcgcg
     3961 ctttcggctc gtcgggtgct ggaagaggcc ggaatgccgg aagataaagt gatgcaggta
     4021 agcgcaatgg cggaccagat gctgctggat tccaaaaatc cgcaaagcgc gggcaaccgg
     4081 cgcattgaga ttatggtgct gaccaaaagt gcgtccgata cgctgtatca atactttggt
     4141 cagcatgggg ataaagtggt gcagccgctg gtgcaaaagc tggataagca gcaggtgctt
     4201 tcgcagcgaa cgcgttaaat gctgaatctt tacgcatttc tcaaactctg aaatcactgt
     4261 atactttacc agtgttgaga ggtgagcaat gcgtaaaatc atgattttca cttcctaaaa
     4321 caccccttat aatctggtca tagagtcatt atagcactgg atgaatatac agatgaggaa
     4381 ggtttacagt tacattcgct tttcgtcaac gaaacaagct tttggtgata gtcatcgaag
     4441 acagagtaag gccatacagg attggttagc cagccatcca gaccacatcc tagacgaatc
     4501 tcttagtttt gaagatttag gacgttcagc ctttcacggt gaccatctaa aagaaggtgg
     4561 agca
//
LOCUS       DAJVSY010000227         4439 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.229, whole genome shotgun sequence.
ACCESSION   DAJVSY010000227 DAJVSY010000000
VERSION     DAJVSY010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4439
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.229"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..1088
                     /gene="nadB"
                     /locus_tag="OQQ19_003943"
     CDS             <1..1088
                     /gene="nadB"
                     /locus_tag="OQQ19_003943"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HCS1805382.1"
                     /translation="VGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGD
                     GIAMAWRAGCRVANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDF
                     DERGELAPRDIVARAIDHEMKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGIDL
                     TQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLV
                     YGWSAAEDITRRMPDAHGVSTLPPWDESRVENPDERVVIQHNWHELRLFMWDYVGIVR
                     TTKRLERALRRINMLQQEIDEYYAHFRVSNNLLELRNLVQVAELIVRCAMMRKESRGL
                     HFTLDYPELLTHSGPSILSPGNHYINR"
     gene            complement(1073..1810)
                     /gene="trmN"
                     /locus_tag="OQQ19_003944"
     CDS             complement(1073..1810)
                     /gene="trmN"
                     /locus_tag="OQQ19_003944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417070.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(1)(Val)
                     (adenine(37)-N(6))-methyltransferase TrmN"
                     /protein_id="HCS1805383.1"
                     /translation="MSQSTSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAG
                     VKRCLDIGAGSGLLALMLAQRTSDSVIIDAVELESEAAAQAQENINQSPWAERINVHT
                     ADIQQWLTQQTVRFDLIISNPPYYQQGVECAIPQREQARYTTTLDHPSLLTCAAECIT
                     EEGFFCVVLPEQIGNGFTELALSMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFS
                     DRLVIRGPDQNYSEAYTALTQAFYLFM"
     gene            1942..3276
                     /gene="srmB"
                     /locus_tag="OQQ19_003945"
     CDS             1942..3276
                     /gene="srmB"
                     /locus_tag="OQQ19_003945"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase SrmB"
                     /protein_id="HCS1805384.1"
                     /translation="MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDV
                     LGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKH
                     THLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEAD
                     RMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRE
                     RKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNC
                     YLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLH
                     RIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIEELRPKTRTPSEKQTG
                     KPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE"
     gene            complement(3485..4366)
                     /locus_tag="OQQ19_003946"
     CDS             complement(3485..4366)
                     /locus_tag="OQQ19_003946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311470.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1805385.1"
                     /translation="MDLRRFITLKTVVEEGSFLRASQKLCCTQSTVTFHIQQLEQEFS
                     VQLFEKIGRRMCLTREGKKLLPHIYELTRVMDTLREAAKKGSDPDGELRVVSGETLLS
                     YRMPQVLQRFRQRAPKVRLSLQSLNCYVIRDALLNDEADVGVFYRVGNDDALNRRELG
                     EQSLVLVASPQIADVDFTEPGRHNACSFIINEPQCVFRQIFESTLRQRRITVENTIEL
                     LSIESIKRCVAANIGVSYLPRFAVEKELESGELIELPFGEQSQTITAMCAHHAGKAVS
                     PAMHTFIQCIEECFLPG"
BASE COUNT         1125 a         1209 c         1127 g          978 t
ORIGIN      
        1 ttgtaggcgc gtgggtatgg aaccgaaata aagaaacggt ggaaacctgc cacgcaaaag
       61 cagtggtact ggcaaccggc ggtgcgtcga aggtgtatca gtacaccacc aatccggata
      121 tttcttctgg cgatggcatt gctatggcgt ggcgcgcggg ctgtcgggtt gccaatctcg
      181 aatttaatca gttccaccct accgcactgt atcacccaca ggcacgcaat ttcctgttaa
      241 cggaagcact gcgcggcgaa ggcgcttatc tcaagcgccc ggatggcacg cgttttatgc
      301 ccgattttga tgagcgcggc gaactggccc cgcgcgatat tgtcgcccgc gccattgacc
      361 atgaaatgaa acgcctcggc gcagattgta tgttcctcga catcagccat aagcccgccg
      421 attttattcg ccagcatttc ccgatgattt atgaaaaatt gctcgggctg gggattgatc
      481 tcacacaaga accggtaccg attgtgcctg ctgcacacta tacctgcggt ggtgtaatgg
      541 ttgatgatca tgggcgtacg gacgtcgagg gcttgtatgc cattggcgag gtgagttata
      601 ccggcttaca cggcgctaac cgcatggcct cgaattcatt gctggagtgt ctggtctatg
      661 gctggtcggc ggcagaagat atcaccagac gtatgcctga tgcccacggc gtcagtacgt
      721 taccaccgtg ggatgaaagc cgcgttgaga accctgacga acgggtagta attcagcata
      781 actggcacga gctacggctg tttatgtggg attacgtcgg cattgtgcgc acaacaaaac
      841 gtcttgagcg cgccctgcgg cgtatcaata tgttgcaaca ggaaatagac gaatattacg
      901 cccacttccg cgtgtcgaat aatttgctgg agctgcgtaa tctggtgcag gttgcggaat
      961 tgattgttcg ctgtgccatg atgcgcaagg agagtcgtgg cctgcatttc acactggatt
     1021 atccggaact gctcacccat tccggtccgt cgatcctttc ccccggcaat cattacataa
     1081 acagataaaa agcctgggtc agcgccgtat acgcttcgga atagttctgg tctggcccac
     1141 gaatgactaa gcgatcgcta aagcattctc ccgcctgcgg ggagaatgcc agcagcaccc
     1201 gatgcggcag tcgcgcttcg ttttccgcca catccgtccg caaacgtaaa tgccagccca
     1261 tgcttaatgc cagctccgta aaaccattac caatctgctc tggcagcact acgcagaaaa
     1321 atccctcttc ggtaatgcac tccgccgcac aggtcagcag cgatgggtga tcaagcgtag
     1381 tggtatagcg agcctgttcc cgttgaggga tcgcgcactc tactccctgc tgatagtaag
     1441 gtgggttact gatgattaaa tcgaagcgta ctgtctgctg tgtgagccac tgctgaatat
     1501 ccgccgtatg gacgttaatc cgctctgccc acggggactg gttgatattt tcctgcgcct
     1561 gcgcggcagc ttcactttcc agctcaacgg catcaattat cacgctgtca ctggttcgct
     1621 gcgccagcat cagtgccagc aacccgctac ccgcgccgat atcaaggcaa cgtttcaccc
     1681 cagccaccgg tgcccatgcg cccagcaaaa tgccatccgt tcccactttc atcgcacagc
     1741 gatcgtgagc aacaaaaaac tgtttaaaag taaatccatt acgacgaagc acggatgtag
     1801 actgtgacat gaaaataaaa ccttgcagga aaaacggcga tagcaccggg tgagaacaat
     1861 acccgagaag cgatatccat acaaacagat gaagattgca gccgtaacgt ctataatcag
     1921 cgccccacac agaggtagaa catgactgta acgacttttt ccgaacttga actcgacgaa
     1981 agcctgctgg aagccctcca ggataaaggt ttcactcgcc cgaccgccat tcaggctgcc
     2041 gccattccgc ctgcgctcga tggccgtgat gtactcggtt ctgcgccgac aggcaccggt
     2101 aaaacggcgg cgtatctgct gccagcgttg cagcacctgc tcgatttccc gcgtaagaaa
     2161 tccggtccgc cgcgtatttt gatcctcacc ccaactcgcg agctggcgat gcaggtggcc
     2221 gatcatgccc gcgaactggc gaaacatacg catctggata tcgccaccat taccggcggc
     2281 gtagcctata tgaaccacgc ggaagtgttc agcgaaaatc aggacatcgt ggtcgccacg
     2341 accggacgtc tgctgcaata cataaaagaa gagaacttcg attgccgcgc ggttgaaacg
     2401 ctgatcctcg acgaagcaga ccgtatgctg gatatgggct tcgctcagga tatcgaacat
     2461 attgctggcg aaacgcgctg gcgtaaacag accctgctct tttcggcaac gctggaaggc
     2521 gatgcgattc aggactttgc cgagcgtctg ctggaagatc cggtggaggt ttctgccaat
     2581 ccgtccaccc gtgagcgcaa aaaaattcat cagtggtatt accgcgccga tgacctggaa
     2641 cataaaaccg cattgctggt gcatctgtta aaacagccgg aagcgacccg ctcaattgtg
     2701 tttgtgcgta agcgtgaacg tgtgcatgag ctggcaaact ggctgcgcga agcgggcatc
     2761 aacaactgct atctcgaagg tgagatggta cagggcaagc gtaatgaagc gattaaacgc
     2821 ctgaccgaag gccgcgtaaa cgtactggta gcaaccgatg ttgccgcgcg cggtatcgac
     2881 attccagacg tcagccacgt ctttaacttc gatatgccgc gcagtggtga tacttatttg
     2941 caccgtatcg gacgtaccgc gcgcgccggt cgtaaaggca ccgcgatttc gctggtggaa
     3001 gcccatgacc atctgctgct tggcaaagtt ggccgttata ttgaagagcc gataaaagct
     3061 cgcgtcattg aggaactacg cccgaaaacg cgtacgccaa gcgagaagca gaccggcaag
     3121 ccatcgaaga aagtactggc aaaacgcgcc gagaagaaaa aagctaaaga gaaagagaag
     3181 ccgcgggtga aaaaacgcca tcgcgacacc aaaaatattg gtaagcgccg taaaccgagc
     3241 ggaacgggcg tgccaccgca aacgacagaa gagtaatctt aattccgggt ttaagcccgg
     3301 aattaaaagt gctggcaaac gcaaaactgc ctgatgcgct acgcttatca ggcctacatg
     3361 gctcatgcaa tatattgaat ttgcacgatc ttgtaggccg gataaggcgt tcacgccgca
     3421 tccggcatga acaaaacgca cttcgtcgac aagttgggtg ccgggtttaa gcccggcatt
     3481 atttttatcc cggcaaaaaa cactcttcaa tacactgaat aaaagtgtgc atcgccgggc
     3541 taaccgcttt tccagcatgg tgtgcgcaca tagccgtaat ggtctgcgac tgttcgccaa
     3601 aaggcaattc aattaattct ccgctctcaa gctctttttc caccgcaaag cggggcaagt
     3661 aactgacacc gatattcgcc gcgacacaac gtttgatact ttcaatgctt aacagctcaa
     3721 tggtgttttc caccgtgatc cgccgctgac gcagcgtgct ctcaaatatc tgccggaaga
     3781 cacattgcgg ttcgttgata ataaagctac aggcgttatg tcttcccggc tcagtaaaat
     3841 cgacatctgc aatttgcggt gaagccacca gcaccagcga ttgttcaccc aactctcgtc
     3901 ggttcagggc atcatcattc cctacgcgat aaaagacgcc gacatcggcc tcatcattca
     3961 gtagcgcatc acggatcacg taacagttca gcgactgcaa cgataaacgc acttttggtg
     4021 cgcgttgccg aaaacgctgc aacacctgcg gcattcggta agagagcaac gtttcgcccg
     4081 aaacaacgcg tagttccccg tccggatctg accccttttt ggcagcctca cgaagcgtat
     4141 ccatcactcg ggtaagttca taaatgtgcg gcagcaactt ttttccttcg cgggtaaggc
     4201 acatccgtcg gccaattttc tcaaataact ggactgaaaa ctcctgctca agctgctgaa
     4261 tatgaaaagt caccgtcgat tgtgtacagc acaatttttg cgaagctcgc aaaaaggaac
     4321 cctcttccac cacggtttta agcgtaataa aacggcgcag atccataacc ccgaacctat
     4381 cgaaaatatc gaatctagaa tataaaaaca ttcatttttt taaatgttct gtgtcgggt
//
LOCUS       DAJVSY010000228         4430 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.230, whole genome shotgun sequence.
ACCESSION   DAJVSY010000228 DAJVSY010000000
VERSION     DAJVSY010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4430)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4430)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4430
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.230"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            128..457
                     /locus_tag="OQQ19_003947"
     CDS             128..457
                     /locus_tag="OQQ19_003947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311560.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HCS1805386.1"
                     /translation="MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAE
                     AARSKAQALLKETRARMHGRTRVQQAARDAVGCADSFVRERPWCSVGTAAAVGIFIGA
                     LLSMRKS"
     gene            705..950
                     /gene="nrdH"
                     /locus_tag="OQQ19_003948"
     CDS             705..950
                     /gene="nrdH"
                     /locus_tag="OQQ19_003948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-like protein NrdH"
                     /protein_id="HCS1805387.1"
                     /translation="MRITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALR
                     AQGFRQLPVVIAGDLSWSGFRPDMINRLHPAPHAASA"
     gene            947..1357
                     /gene="nrdI"
                     /locus_tag="OQQ19_003949"
     CDS             947..1357
                     /gene="nrdI"
                     /locus_tag="OQQ19_003949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class Ib ribonucleoside-diphosphate reductase
                     assembly flavoprotein NrdI"
                     /protein_id="HCS1805388.1"
                     /translation="MSQLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYIL
                     IVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCG
                     VPWLYRFELMGTQSDIENVRKGVTEFWQRQPQNA"
     gene            1330..3474
                     /gene="nrdE"
                     /locus_tag="OQQ19_003950"
     CDS             1330..3474
                     /gene="nrdE"
                     /locus_tag="OQQ19_003950"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit alpha"
                     /protein_id="HCS1805389.1"
                     /translation="MATTTAECLTQETMDYHALNAMLNLYDSAGRIQFDKDRQAVDAF
                     MATHVRPNSVTFSSQQQRLNWLVNEGYYDESVLNRYSRDFVITLFAYAHTSGFRFQTF
                     LGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGDATLALQLTDEMLSGRFQPA
                     TPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAG
                     APIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKREN
                     ADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGKPFADIAISEHYDEL
                     VADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPVAGRINMSNLCSEIL
                     QVNCASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSH
                     IRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRT
                     SMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMW
                     AQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPA
                     PFMTNENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY
                     AWRKGIKTLYYIRLRQMALEGTEIEGCVSCAL"
     gene            3484..4398
                     /gene="nrdF"
                     /locus_tag="OQQ19_003951"
     CDS             3484..4398
                     /gene="nrdF"
                     /locus_tag="OQQ19_003951"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit beta"
                     /protein_id="HCS1805390.1"
                     /translation="MKLSRISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPA
                     WQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPYALTPHEEAVLSNISFMEAVHA
                     RSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAQIIQQHYRGDDPLKKKIASVFLESF
                     LFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREEL
                     KSFAFDLLLELYDNELQYSDELYAETPWADDVKAFLCYNANKALMNLGYEPLFPAEMA
                     EVNPAILAALSPNADENHDFFSGSRIGN"
BASE COUNT         1093 a         1133 c         1131 g         1073 t
ORIGIN      
        1 gcgggcctac cttacctgat tgcgcattca caacgctttc agaaaagtcc ataaagccgc
       61 gatgaacctc agttaagaaa attatggtct acactgaaaa ttacatcgaa ttctaatggg
      121 ggatcatatg tttaaccgac cgaaccgcaa cgacgttgat gatggcgtgc aggatatcca
      181 gaatgatgtc aatcaattag ctgacagcct cgaatctgta ttgaagtcct ggggcagcga
      241 cgccaaaggg gaagctgaag ccgcacgcag taaagctcag gcgttgctga aagaaaccag
      301 ggcgcgaatg catggtcgta ctcgcgtcca gcaagccgcg cgcgatgccg ttggctgcgc
      361 ggattctttt gttcgtgaaa gaccctggtg tagcgtgggt acagcagctg cggtaggtat
      421 ttttatcggc gcactgttaa gcatgcgcaa atcgtagtgc aaaaatgata ataaatacgc
      481 gtctttgacc ccgaagcctg tcttcggggt ttctttttgc ctggtgaatc acaaaaatcc
      541 ccctcccccg tcacgctcat atccagggta atttcgatca ctatttgcta tatattgtgt
      601 agttgaatct ttttccaact acatctagta tctctgtatc aacagagaga caacccgacg
      661 cgtatcatcg cgccgtatct tcattttaaa cggaaatacg aatcatgcgc ataactattt
      721 acactcgtaa cgattgcgtt cagtgccacg ccaccaaacg ggcgatggaa aaccgggggt
      781 ttgattttga aatgattaat gtcgatcgcg ttcctgaagc agcggaagcg ttgcgtgctc
      841 agggctttcg tcagttgccg gtagtgattg ctggcgatct tagctggtct ggtttccgtc
      901 cggacatgat taaccgtctg catccagcgc cacacgcggc cagtgcatga gccagctcgt
      961 ctacttctcc agcagctccg aaaacacgca gcgttttatc gaacgtttag gtctgcccgc
     1021 ggtgcgcatc ccgctcaatg agcgggaacg gattcaggta gacgagcctt acatcctgat
     1081 cgtgccctct tacggcggcg gcggtacggc tggcgcggtg ccacgacagg taattcgctt
     1141 tttaaacgac gagcacaacc gggcgttgct tcgcggcgtt attgcttctg gtaatcgcaa
     1201 ctttggtgag gcgtatggcc gcgccggaga tgtgattgcc cggaaatgcg gcgtgccgtg
     1261 gctgtaccgt tttgaactca tgggtacgca aagcgatatc gaaaacgttc gtaaaggagt
     1321 aaccgaattt tggcaacgac aaccgcagaa tgcctgacgc aggaaacgat ggattaccac
     1381 gcgctgaatg cgatgcttaa cctctacgat agcgcaggtc gcattcagtt cgataaagac
     1441 cgccaggccg ttgacgcctt tatggcgacg catgtgcgtc cgaacagtgt gaccttcagt
     1501 agccagcagc agcgcctgaa ctggctggtc aacgaaggtt actatgatga aagcgttctt
     1561 aatcgctact ctcgcgactt tgtcattacg ctgtttgcct acgcacacac cagcggtttt
     1621 cgtttccaga cattcctcgg ggcatggaag ttttacacca gctatacgtt gaagacattc
     1681 gacggtaaac gttatctgga agattttgcc gatcgagtca cgatggtggc gctgacgctg
     1741 gcacaaggcg atgcgacgct ggcgttgcaa ctgaccgatg aaatgctgtc aggacgcttt
     1801 cagccagcca ctccgacatt cctcaactgc ggtaagcagc agcgcggcga actggtttcc
     1861 tgttttctgc tgcgtattga agacaatatg gagtcgattg gccgggcggt aaattccgca
     1921 ctgcaactgt cgaaacgcgg cggcggcgtg gcatttttgc tgtcgaatct gcgagaagcg
     1981 ggcgcgccaa ttaaacgtat tgaaaatcaa tcttctggcg taattccggt gatgaaaatg
     2041 ctggaagacg cattttccta tgccaaccaa ctcggcgcgc gtcagggggc aggtgcagtc
     2101 tatttacatg ctcatcatcc cgatattctg cgttttctcg atacaaaacg ggaaaatgcc
     2161 gacgaaaaaa tccgcattaa aacactgtcg ctgggcgtgg tgatcccgga tatcactttc
     2221 catctggcaa aagagaatgc gcagatggcg ctgttttcgc cctatgacgt tgagcgagtt
     2281 tatggcaagc cgtttgccga tatcgccatc agcgaacact atgacgaact ggttgccgat
     2341 gaacgcatcc gcaaaaaata cctcaacgcc cgtgatttct tccagcggct ggcagaaatc
     2401 cagtttgagt ccggctatcc ctacatcatg tatgaagaca cggtaaaccg tgctaaccct
     2461 gtcgccgggc gcataaatat gagtaatctc tgctcagaga ttttgcaggt caactgtgcc
     2521 tcagagtatg acgagaatct cgactatgcc cgcacaggcc atgatatctc ctgcaattta
     2581 ggttcgttga atattgcgca caccatggat tcccccgatt ttgcccgcac ggtagagact
     2641 gccgtgcgcg gtttaacggc ggtgtcagat atgagtcata tccgcagcgt gccgtccatc
     2701 gaagccggaa atgccgcctc acacgccatc ggactggggc agatgaattt acacggctat
     2761 ctggcgcgag aaggcatcgc ttatggttcg ccggaagcac tggatttcac caatctctat
     2821 ttctatgcca tcacctggca cgcactgcgt acctcgatgt tgctggcgcg cgaacgcggt
     2881 gaaaccttcg ccgggttcaa acagtcacgt tatgccagtg gtgaatattt tagccaatat
     2941 ctgcaaggta actggcagcc gaaaacggcg aaagttggcg aactgtttgc ccgcagcggt
     3001 attacgttac ctacccgtga gatgtgggcg caactgcgcg acgacgtgat gcgctacggc
     3061 atttataacc agaatcttca ggcggtgccg ccaaccggtt ctatctctta tatcaaccat
     3121 gctacgtcga gtattcatcc gattgtggcg aaagtagaga tacgcaaaga gggcaaaaca
     3181 ggacgcgttt actaccctgc cccgtttatg actaacgaga atctggcgct gtatcaggat
     3241 gcttacgaaa tcggcgcaga aaagatcatc gacacctacg ccgaagcgac tcgccatgtc
     3301 gatcaggggc tgtcgctgac gctgtttttc cccgataccg ccaccactcg cgatatcaac
     3361 aaagcgcaga tttacgcctg gcgcaagggt atcaaaacgc tctattacat tcgcctgcgt
     3421 cagatggcgc tggaaggcac tgaaattgaa ggctgcgtct cctgtgcact ttaaggaata
     3481 tctatgaaac tctcacgtat cagcgccatc aactggaaca agatatctga cgataaagat
     3541 ctggaggtgt ggaatcgcct gaccagcaat ttctggctac cagaaaaggt gccgctgtcg
     3601 aacgatattc ctgcctggca gacattaact gtcgtagaac aacaactgac gatgcgcgtt
     3661 tttactggcc tgacgctgct cgacacgctg caaaatgtta tcggcgcgcc ttcgctgatg
     3721 ccctatgcac tcacgcctca tgaagaagcg gtattatcga atatcagctt tatggaagcg
     3781 gttcatgccc gctcttacag ttcgattttc tcgacgctgt gtcagaccaa agatgtcgat
     3841 gccgcctacg cctggagtga agaaaacgca ccgttgcagc gaaaagctca gattattcag
     3901 caacattatc gcggtgatga tccgctgaaa aagaaaatcg ccagtgtgtt tcttgaatct
     3961 tttttgttct attccggttt ctggctgccg atgtattttt ccagccgcgg aaagctgacc
     4021 aataccgcag atctgatccg tctgattatc cgcgatgaag cagtccacgg ttactacata
     4081 ggctataaat atcagaaaaa catggaaaag atatctctgg gacaacgtga agagttgaag
     4141 agtttcgcct tcgatttgtt gctggaactc tacgacaacg agttgcaata cagcgatgag
     4201 ctgtacgccg aaaccccgtg ggctgacgat gtgaaagcgt ttctctgtta caacgccaat
     4261 aaggctttga tgaatctggg ctacgaaccg ttatttcccg cagaaatggc ggaagtgaat
     4321 ccggcaatcc tcgccgcgct ttcgccgaat gccgatgaaa atcacgattt cttttccggt
     4381 tcacgtatag gaaattgaaa aactaagcga tacccctgtc cgcgccttat
//
LOCUS       DAJVSY010000229         4402 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.231, whole genome shotgun sequence.
ACCESSION   DAJVSY010000229 DAJVSY010000000
VERSION     DAJVSY010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4402)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4402)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4402
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.231"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            228..600
                     /locus_tag="OQQ19_003952"
                     /pseudo
     CDS             228..600
                     /locus_tag="OQQ19_003952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611434.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(1162..2109)
                     /gene="icsP"
                     /locus_tag="OQQ19_003953"
     CDS             complement(1162..2109)
                     /gene="icsP"
                     /locus_tag="OQQ19_003953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858404.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="omptin family outer membrane protease IcsP"
                     /protein_id="HCS1805391.1"
                     /translation="MKLKFLVLALCVPAIFTTHATTNYPLFIPDNISTDISLGSLSGK
                     TKERVYHPKEGGRKISQLDWKYSNATIVRGGIDWKLIPKVSFGVSGWTTLGNQKASMV
                     DKDWNNSNTPQVWTDQSWHPNTHLRDANEFELNLKGWLLNNLDYRLGLIAGYQESRYS
                     FNAMGGSYIYSENGGNRNKKGAHPSGERTIGYKQLFKIPYIGLTANYRHENFEFGAEL
                     KYSGWVRSSDTDKHYQTETIFKDEIKNQNYCSVAANIGYYVTPSAKFYIEGSRNYISN
                     KKGDTSLYEQSTNISGTIKNSASIEYIGFLTSAGIKYIF"
     gene            complement(3490..3642)
                     /locus_tag="OQQ19_003954"
                     /pseudo
     CDS             complement(3490..3642)
                     /locus_tag="OQQ19_003954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            3698..4390
                     /gene="ospZ"
                     /locus_tag="OQQ19_003955"
     CDS             3698..4390
                     /gene="ospZ"
                     /locus_tag="OQQ19_003955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector cysteine
                     methyltransferase OspZ"
                     /protein_id="HCS1805392.1"
                     /translation="MISPIKNIKNVFPINTANTEYIVRNIYPRVEHGYFNESPNIYDK
                     KYISGITRSMAQLKIEEFINEKSRRLNYMKTMYSPCPEDFQPISRDEASIPEGSWLTV
                     ISGKRPMGQFSVDSLYHPDLHALCELPEISCKIFPKENSDFLYIIVVFRNDSPQGELR
                     ANRFIELYDIKREIMQVLRDESPELKSIKSEIIIAREMGELFSYASEEIDSYIKQMND
                     RFSQIKARMSVT"
BASE COUNT         1352 a          864 c          849 g         1337 t
ORIGIN      
        1 tgcgatctgg ttcaacaata tgcagatggt acacaacctc tttaaccagc ccatccggat
       61 tattcagagc ccttccgcaa tccggaataa aagtgctgtt ttaccgtgaa ccctctgaaa
      121 atcagcgagc agtgttttaa ccagccgacg ttcagagcgt actgacagac ggtggacaat
      181 ttgaataaac agttcaatca gaccgtagat gctctcccgt tggcgacatg ctgggagcgg
      241 tggaacaccg cttcggcaac gagcttccgg cgtctccagt gaagtgactg acggataatg
      301 gttcatgcta ccgggctaat gaaacacgcc agttcacccg gatgttggga ctttgttgaa
      361 ccgaagaaca cggcggtgcg gagtccggag agtaacagaa tagcaaagag cttcgtgaaa
      421 acaataaagt gtgactacat cagtatcatg cccaaacctg acgggttaac ggcagcaaag
      481 aaccttgcag aggcattcga gcattataac gaatggcatc cgcatagtgc gctggattat
      541 cgctcgccac gggaatatct gcggcagcgg gccaatgata acaggtgtct ggaaatatag
      601 gggcaaagcc acccacgaac gatccagcat ataatcaaga aattagattt catttaacat
      661 aagatagatt atgtgcacca agaggcattt ccttaatttc tgaatttaca ggctcttttg
      721 ctctctttgc tatgctgtgg atttggaaag atagagtgct ggctgattat ttaggtattt
      781 tcatcagcat gtccctgata gcactgttcc atcagcgctt tcaggcgata atagtagacc
      841 ttggatagcc tctgctcatg tgtaacttga taccccgaga acagccacga tgctctaagc
      901 ggttcttatt tctccggtct cagggtcggt aatgccaaca gtaagtccac agtaatcaac
      961 gaagagtttt ttgaaccgcc ccggaaatcc tggagactaa acgccctgag aaagaggtaa
     1021 acagaatgac taaaaataca cgtttttccc ccgaagtccg tcaacgggca gttcgtatgg
     1081 ttctggaaag tcagggcgaa tatgactcac aatgggcggc aatttttagc catgaaaacg
     1141 taatcaactc ggtgaaccaa ttcaaaaaat atactttata cctgcggaag tgagaaaacc
     1201 aatatattca atacttgcac tatttttaat ggtgccagat atattggtac tttgctcata
     1261 aagagatgta tcaccttttt tattagaaat gtaatttctg gagccttcta tataaaattt
     1321 tgcactgggg gtgacatagt atccaatatt cgcagcaaca gagcagtaat tttggttttt
     1381 tatttcatct ttaaaaattg tctcagtctg atagtgttta tctgtatcag atgaacgaac
     1441 ccaaccacta tatttcagtt ctgctccaaa ctcaaaattc tcatggcggt aattagcagt
     1501 taatccaata taaggtattt tgaagagctg tttgtaacct attgttcttt caccactagg
     1561 atgtgcccct tttttattcc tgttcccccc gttttcacta taaatataac tccctcccat
     1621 tgcattaaaa ctgtaacgac tctcttggta acctgctatt agtccaagtc gataatccaa
     1681 attatttaat aaccaacctt taagattcag ctcgaattcg ttagcatcac ggagatgcgt
     1741 attgggatgc cagctctggt cggtccatac ctgaggggta ttggaattgt tccagtcttt
     1801 atcaaccatg cttgctttct ggttacctaa agtagtccaa ccggaaactc cgaaagacac
     1861 ttttggaatt agcttccaat cgatgccacc tctaacaata gtcgcattac tgtatttcca
     1921 gtccagttga ctaatttttc tccccccttc cttgggatga taaacgcgtt cttttgtttt
     1981 gccactcaga gatcctagac taatatccgt actgatgtta tccggtatga aaagtggata
     2041 gttagtggta gcatgtgtag taaagatcgc aggtacacaa agtgcaagta caaggaattt
     2101 taatttcatc gagaactcta cttttttggt tgaaatgtcc atgatcttct tactttataa
     2161 gataaacgtc aatgccaagc attattttaa ttaaatattt gtttatgtta ccaagaacat
     2221 atcttttatt ataatattta ttgaactttt gtaaaaataa aaaaatacct cattgtgcga
     2281 ataaagtaac gggggccata gatttctcta cctacctttt ggtgttcata cctgaggctg
     2341 atagtttcag gattccgcga caattctact caccttcttg ttctctcgcc aatatgaaat
     2401 caatcagaaa agcgttccat aagaacaacg ataagacaat aaattgtcat cacggctgca
     2461 atagccaacg tgcctttcag taccaacatg acaacctcct gtatttgacg taacgtgtgc
     2521 tgataaatat gtatttgtat ctcaactgac tcaatacaac acttaagtat agtttttcag
     2581 attttgtttt tcccgtgaaa tattatggaa atggcagaag caatacattg aattccgatt
     2641 cgagtgaata cggctagcgg gcacctcact ttagcactga agccatcaac ttttatttga
     2701 cttatttcaa tggaaagctt tctcactatc agtacaggta attcccatcc ttttaaagtc
     2761 gagagtcaga ctgcgactaa tacagttaaa gtgaccaaac tcagttatcc tctacacatt
     2821 ttacctcatg tttacttgga caattcattg gtgcttttat aaaagaataa atattctact
     2881 aatttaatgc atcacctaaa atagtatttt ttataataga actgtatcta tagtatatta
     2941 ttaaagctta attatttatt atgctttaat gtggttgtcc gattaaggac taatccttga
     3001 aaacgccgta tagggcggga gttcactcta ttgcgataac gtaaccgtac aatattgtgc
     3061 gtttcccaaa ttgaccacta ctgaactatt ctgggattta aatgcaataa aatggttggt
     3121 tgaaggtcgt ggtgatgatg ttagtccttt tgagaatatt ccagtgccag atcttactta
     3181 taataaagag gcttggcagt ttggataagc tattgtcctt attccactaa tacaaacttt
     3241 ttgtaaagta tattaaatat acttcatttc atactgaaat ccccggaagt attcaatcaa
     3301 acaattacac cataaaagga agagggagcc ccaattaagt tatcaagcat gtttatgata
     3361 cctgcagggt ataaattttc tggctgcaag cagacacata taaaacgtct ttattgatcc
     3421 tacccacata atatggacgc agtcgtaagt gaggctctgt gagcctaccc acgtaatatg
     3481 gacacaggcc taagcgaggt tctggttttc aaattgttcc ggactgaggc cgccacacca
     3541 acggtgccgt cgccagcgat tgtaatcgca ctcgatataa ttaaacactg ttgcccgcac
     3601 tatttcccga tagataaagt gttctccgtg gagacattcc acttaggaac aattatattg
     3661 ttcatggtaa tgtttatatt tgagtataga gattaaaatg attagtccca tcaagaatat
     3721 taagaacgta tttccaataa atactgcaaa tactgaatat atagtgagaa atatttatcc
     3781 tagagttgaa catggttact ttaatgaatc accaaacata tatgacaaga agtatatctc
     3841 tggtataacc agaagtatgg cacaattaaa aatagaggag tttattaatg agaaatccag
     3901 acgacttaat tatatgaaga caatgtattc tccatgtccg gaagattttc agcctatttc
     3961 cagagacgaa gccagtatac cggaaggaag ctggttgaca gttatatctg gaaaacgtcc
     4021 tatggggcaa ttttctgtgg atagtttgta ccatcctgac ttacatgcat tatgtgagct
     4081 cccagagatt agttgtaaga tcttccctaa agaaaatagt gattttttgt atataattgt
     4141 tgtattcaga aatgattctc cccaaggaga actacgggca aatcggttta tagaactata
     4201 tgatataaaa agagagatta tgcaagtgtt aagagatgag tcgccagagt taaagtctat
     4261 taaatctgag attattattg ctcgtgaaat gggagaactt tttagttatg catcagagga
     4321 aatagatagc tacataaaac aaatgaatga caggttttct caaatcaagg ctcgaatgtc
     4381 tgttacttaa tgtatattaa tt
//
LOCUS       DAJVSY010000230         4379 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.232, whole genome shotgun sequence.
ACCESSION   DAJVSY010000230 DAJVSY010000000
VERSION     DAJVSY010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4379)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4379)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4379
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.232"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(62..724)
                     /gene="exoX"
                     /locus_tag="OQQ19_003956"
     CDS             complement(62..724)
                     /gene="exoX"
                     /locus_tag="OQQ19_003956"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease X"
                     /protein_id="HCS1805393.1"
                     /translation="MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPIS
                     PQAMAIHRITEAMVADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKL
                     ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ
                     MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWSFNNLDSMSPELRLTLKHYLE
                     NT"
     gene            complement(748..1404)
                     /locus_tag="OQQ19_003957"
     CDS             complement(748..1404)
                     /locus_tag="OQQ19_003957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HCS1805394.1"
                     /translation="MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPS
                     LSLLACDYSRRALPAPPDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPW
                     RKTPGIYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARR
                     LQFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
                     "
     gene            complement(1506..1736)
                     /gene="holE"
                     /locus_tag="OQQ19_003958"
     CDS             complement(1506..1736)
                     /gene="holE"
                     /locus_tag="OQQ19_003958"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit theta"
                     /protein_id="HCS1805395.1"
                     /translation="MLKNLAKLDQTEMDKVNVDLAAAGVAFKERYNMPVIAEAVEREQ
                     PEHLRSWFRERLIAHRLASVKLSRLPYEPKLK"
     gene            1875..2249
                     /gene="yobA"
                     /locus_tag="OQQ19_003959"
     CDS             1875..2249
                     /gene="yobA"
                     /locus_tag="OQQ19_003959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopC domain-containing protein YobA"
                     /protein_id="HCS1805396.1"
                     /translation="MASTARSLRYALAILTTSLVTPSVWAHAHLTHQYPAANAQVTAA
                     PQAITLNFSEGVETGFSGAKITGPKNENIKTLPAKRNEQDQKQLIVPLADSLKPGTYT
                     VDWHVVSVDGHKTKGHYTFSVK"
     gene            2253..3120
                     /gene="copD"
                     /locus_tag="OQQ19_003960"
                     /pseudo
     CDS             2253..3120
                     /gene="copD"
                     /locus_tag="OQQ19_003960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416354.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis membrane protein CopD"
     gene            3133..3474
                     /locus_tag="OQQ19_003961"
     CDS             3133..3474
                     /locus_tag="OQQ19_003961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebY family protein"
                     /protein_id="HCS1805397.1"
                     /translation="MMKKSILAFLLLTSSAAALAAPQVITVSRFEVGKDKWAFNREEV
                     MLTCRPGNALYVINPSTLVQYPLNDIAQKEVASGKTNAQPISVIQIDDPNNPGEKMSL
                     APFIERAEKLC"
     gene            complement(3856..>4379)
                     /locus_tag="OQQ19_003962"
     CDS             complement(3856..>4379)
                     /locus_tag="OQQ19_003962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001189081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1805398.1"
                     /translation="NCIREAADQLPAWFPLAMDLALVTGQRREDITNMRFSDIYDDRL
                     HIRQIKTGMMIAIPLSLSLPVAGLRLGAVVEQCRMVSRGDYLISAGIRKNSPDGSIHP
                     DGLTKKFVAARKLTGIQFSENPPTFHEVRSLAGRLYKETCGEEFAQRLLGHTSEKTTK
                     MYLDEREKTYLLL"
BASE COUNT         1089 a         1057 c         1080 g         1153 t
ORIGIN      
        1 cgatggaata tgcttttctg gtcgcgctgg cgcagggaac attacccgct acgcctgcgg
       61 attaagtatt ttccagataa tgtttcagtg ttaaacgcag ctccgggctc atgctgtcca
      121 ggttattaaa tgaccagcgc agatagcccg gatcgcgttc ggcaacgtcg gaaaccgctt
      181 tgccacggta tttgccaaag gtgaaggtcg tcatcaacga cggacgtccg gtgatatcgg
      241 ccatctgttc tgccgtccag ccggaggtgt tcataatatc gataagcaac gcggcggtga
      301 tataacagtc atacaacgcg cggtgatgat gcaggcccgg cggcgtctgt acattgagct
      361 tccgtgtttt atataacgcc atattgctgt acttgatccc tggccacaaa cgacgggcca
      421 gtttcatagt gcaaatccac tcaccgggca tctcaggcag tacgcggcgg tcaaagctgg
      481 cgttgtgcgc gacataccat tcactaccgt aatagtgtgg gatcacatct tcaatccacg
      541 gtttatcggc gaccatggct tcggtgatgc gatgaatcgc catcgcttgt ggactaatag
      601 gacgatcggg gcgcaccagg tggctcatgg ggttgacgat ttttccgtca atgacatcaa
      661 cagaggcaat ctcaacgatc cctccctgca aaccgcaggt ttctgtatcg ataatgcgca
      721 acatggcatg ctccaggccg aaaaagccta gcgtaatgga atgatatcgc cttgccaacc
      781 ctgtgatgaa cgctgaccga ctaacaataa tgaaccacga tcggcgcgaa cgatgagacg
      841 accatattca tcccatagtg cactgttacc acgggcattt gccatcagca cggcaatcga
      901 gtactgatgt gaaaaaaatt gtaagcgacg ggccgacgcc agcaggtcgg gttctcccag
      961 acattgccct gtagtaaaca gtgaacaggt cgggtccata tccatacctt gcggttgttc
     1021 atcgaccacc gtgatggttc tggaacgacg gcccagacat gcaccatgac tctgatggta
     1081 gatcccaggc gtttttcgcc acggtgcgaa caccgcaatt ccacgaataa agcgatcgtt
     1141 atattcaacg ggaaggccgg caatgatggt cattcgccag gtcgttgcgg cataacaaag
     1201 cgggtctaac agtgagagat cgggtggggc aggaagggca cgtcgcgaat aatcacacgc
     1261 cagtaaagaa agcgatggaa aaactaacag ctgacattgt tgcctggcgg cggccctcac
     1321 aaactccaga tgatgagcta cctgttcggt gagtgaggtt ttacgaggct catattgcgc
     1381 tgctgcaact ttccagaacg acataatgac ttccttttca aaatgactgc aaattatggg
     1441 tgcggtttag aaaatactca taatttagca ggcgttatgt aagaaagtgt aactctgtat
     1501 aagttttatt taagtttggg ctcgtaaggt aaacgtgaca gtttgaccga agccaaacgg
     1561 tgggcaataa gcctctcgcg aaaccagctg cgcaaatgtt caggctgttc acgttcaacc
     1621 gcttcagcga tcaccggcat attgtagcgt tctttaaatg ccaccccggc cgccgccaaa
     1681 tcgacattca ctttatccat ttctgtttga tccagtttag ccagattctt cagcattctt
     1741 aatctcctca tcattcgcgg gcaaaagtta ctaagagtga gccaggatgg caagccggaa
     1801 ttgatgatcc tcgactcaga cattagacaa ggttatgctc tgtaaaaaag ttattacaaa
     1861 aagtaataga taatatggct tcaactgcac gctcccttcg ctacgcgctg gcaatcctga
     1921 ccacttcgtt ggtgacacct tccgtctggg cacatgcgca tttaacgcat cagtatcctg
     1981 cggcaaacgc gcaagtgaca gctgcaccgc aggcaatcac tttaaacttc tcggaaggtg
     2041 ttgaaacagg attcagtggt gcaaaaatca cggggccaaa aaacgaaaat attaaaacat
     2101 taccggcgaa gcgaaatgag caggaccaaa agcaactgat tgttccactg gccgattcgc
     2161 tgaaacccgg aacctacacc gttgactggc atgttgtttc ggtggacggg cataaaacga
     2221 aaggacacta cacctttagc gtgaaataaa tcatgctggc gtttacctgg atcgcgctgc
     2281 gatttatcca tttcacctcg ctgatgctgg tttttggctt cgcaatgtac ggtgcctggc
     2341 tggccccctt gacgattcgt cgcttgctgg cgaagcgttt tctgcgttta caacagcacg
     2401 ctgccgtctg gagtttgatc agtgccactg caatgctcgc cgttcagggc gggttgatgg
     2461 gaacgggatg gacagatgta ttttcgccaa acatttggca ggctgttttg caaacgcagt
     2521 ttggtggcgt ctggttatgg caaattgttc tcgccctcgt aacgttgcgc ccttatgcaa
     2581 ccgcggaata tgccacgttt gctgtttatg ctcactaccg cgcaatttat tctgctggcg
     2641 ggagtggggc atgcgacgct gaatgaaggg gtaacggcga aaatccatca gactaatcac
     2701 acgattcacc tgatttgtgc ggcggcgtgg tttgggggat tactgccggt gctctggtgt
     2761 atgcaactca tcaaaggccg ttggcgacac caggctattc aggcgctgat gcgtttttca
     2821 tggtgcgggc attttgcggt gatcggcgta ctggcaagcg gggtgcttag tgcattgttg
     2881 attaccggat ttccccccac gcttacgact tactggggcc aactcttatt gctcaaagcc
     2941 atcctggtga tgattatggt ggtcattgcg ctggctaatc gttatgttct tgtaccgcgc
     3001 atgaggcagg atgaagatcg tgcggcaccc tggtttgtgt ggatgactaa actcgaatgg
     3061 gcgataggtg cggtagtgct ggtgatcatc agcctgcttg cgactctcga acctttttga
     3121 tggattacga aaatgatgaa aaaaagtatt ctggcgtttc tgttactcac cagttctgca
     3181 gcggcgctgg ctgcaccgca ggtgattacc gtcagtcgtt ttgaagtggg taaagacaaa
     3241 tgggcgttta atcgcgaaga ggtgatgctg acttgccgac cgggtaatgc tttgtatgtt
     3301 attaatccga gtaccctcgt gcagtatcct ttaaacgata tcgcacaaaa ggaagttgcc
     3361 agtgggaaga ccaatgccca acccatttcg gtgattcaga ttgatgatcc taacaatccc
     3421 ggcgaaaaaa tgagtctggc accgtttata gaacgagctg aaaaactctg ttaattacct
     3481 aaaatagcct tttgatttcc aataaaaaaa ccgcctcagt tctttcacca gaacgggcgg
     3541 ttttaacatt tcagctgatg accaccacgc tttttattga ccattttgca cgcaaactgg
     3601 aaaacctggc gtcgtcatct attcttaaag ggcaaggcaa ctaagcctgc attaatgcca
     3661 acttttagcg cacggctctc tcccaagagc catttccctg gaccgaatac aggaatcgta
     3721 ttcggtcttt ttttaattgc atttgaaatc aattagttgc aaatgtctcc ccgaaattta
     3781 ctcgaatttc tgtattccgg tcttttttgg ttatatcaca accaaaatac atttaacaat
     3841 ccatttacgt taaaatcaga gcagtaagta cgttttttct ctctcatcaa gatacatttt
     3901 tgttgtcttc tccgatgtgt ggccaagtag acgctgagca aattcttctc cacatgtttc
     3961 tttgtacaat cgtccagcca ggcttctgac ttcgtgaaaa gttggtgggt tttcactgaa
     4021 ctggatacct gttaattttc tggctgcgac aaatttcttt gtcaggccgt ccgggtgaat
     4081 gctgccgtca gggctgtttt ttctaatccc ggcactgatt agataatccc ccctacttac
     4141 catgcggcac tgttcaacta ctgcaccaag tcgtaaacca gcgacaggaa ggctgagtga
     4201 cagggggata gcaatcatca ttcctgtctt aatttgcctg atgtggagac gatcatcata
     4261 aatatcactg aaccgcatat tcgttatgtc ttcgcgacgt tgtcctgtta caagggctaa
     4321 atccatagct aatgggaacc atgccggaag ttgatctgct gcctccctga tgcagttgt
//
LOCUS       DAJVSY010000231         4373 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.233, whole genome shotgun sequence.
ACCESSION   DAJVSY010000231 DAJVSY010000000
VERSION     DAJVSY010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4373
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.233"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..100)
                     /locus_tag="OQQ19_003963"
     CDS             complement(<1..100)
                     /locus_tag="OQQ19_003963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxypyruvate isomerase"
                     /protein_id="HCS1805399.1"
                     /translation="MLRFSANLSMLFGEYDFLARFEKAAQCGFRGVE"
     gene            complement(113..1894)
                     /gene="gcl"
                     /locus_tag="OQQ19_003964"
     CDS             complement(113..1894)
                     /gene="gcl"
                     /locus_tag="OQQ19_003964"
                     /EC_number="4.1.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate carboligase"
                     /protein_id="HCS1805400.1"
                     /translation="MAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIR
                     HILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITG
                     QAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLV
                     DLPFDVQVAEIEFDPDMYEPLPVYKPAASRMQIEKAVEMLIQAERPVIVAGGGVINAD
                     AAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFG
                     IGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQ
                     EMQKAGRLPCRKEWVADCQQRKRTLLRKTYFDNVPVKPQRVYEEMNKAFGRDVCYVTT
                     IGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQ
                     FLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYG
                     VDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILERVTNISMGSE
                     LDNVMEFEDIADNAVDAPTETCFMHYE"
     gene            complement(1984..2799)
                     /gene="allR"
                     /locus_tag="OQQ19_003965"
     CDS             complement(1984..2799)
                     /gene="allR"
                     /locus_tag="OQQ19_003965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor AllR"
                     /protein_id="HCS1805401.1"
                     /translation="MTEVRRRGRPGQAEPVAQKGAQALERGIAILQYLEKSGGSSSVS
                     DISLNLDLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVFNVGAAYIHNRDVLSVA
                     GPFMRRLMLLSGETVNVAIRNGNEAVLIGQLECKSMVRMCAPLGSRLPLHASGAGKAL
                     LYPLAEEELMSIILQTGLQQFTPTTLVDMPTLLKDLEQARELGYTVDKEEHVVGLNCI
                     ASAIYDDVGSVVAAISISGPSSRLTEDRFVSQGELVRDTARDISTALGLKAHP"
     gene            complement(2877..3359)
                     /gene="allA"
                     /locus_tag="OQQ19_003966"
     CDS             complement(2877..3359)
                     /gene="allA"
                     /locus_tag="OQQ19_003966"
                     /EC_number="4.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ureidoglycolate lyase"
                     /protein_id="HCS1805402.1"
                     /translation="MKLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALV
                     EILEQDRTLISINRAQPANLPLTIHELERHPLGTQAFIPMKGEVFVVVVALGDDKPDL
                     STLRAFITNGEQGVNYHRNVWHHPLFAWQRVTDFLTIDRGGSDNCDVESIPEQELCFA
                     "
     gene            3589..>4373
                     /gene="allS"
                     /locus_tag="OQQ19_003967"
     CDS             3589..>4373
                     /gene="allS"
                     /locus_tag="OQQ19_003967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator AllS"
                     /protein_id="HCS1805403.1"
                     /translation="MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENT
                     GVALFFRTTRSVTLTAAGEHLLSQARDWLSWLESMPSKLQQVNDGVERQVNIVINNLL
                     YNPQAVAQLLAWLNERYPFTQFHISRQIYMGVWDSLLYEGFSLAIGVTGTEALANTFS
                     LDPLGSVQWRFVMAADHPLANVEEPLTEAQLRRFPAVNIEDSARTLTKRVAWRLPGQK
                     EIIVPDMETKIAAHLAGVGIGFLPKSLCQSMIDNQQLVSRVIPT"
BASE COUNT         1117 a         1185 c         1044 g         1027 t
ORIGIN      
        1 attcaacgcc gcgaaaacca cactgcgcag ctttctcaaa acgggcgaga aaatcatatt
       61 caccaaataa catcgataaa ttagcagaga aacgtaacat tatttatctc ccttattcat
      121 agtgcatgaa gcaggtttca gtcggtgcgt ccactgcgtt atcggcgata tcttcaaatt
      181 ccatgacgtt atccagttcg ctgcccatcg aaatattggt cacacgctcg agaataactt
      241 ccacgactac cggtacccga tattgcgcca ttaaggcttt cgcctgttca aaggctggcg
      301 caatatcttc cggtttgaag acgcgaatcg ctttacaacc taaaccttcc gctactttta
      361 cgtggtcgac gccgtaaccg ttcacttcgc tggagttgat attctcgaaa gcgagttgca
      421 cgcagtagtc catgtcaaag gcgcgttgtg actgacgaat caggccgaga taggcgttat
      481 tcaccagcac atggatgtac ggaatgttga actgcgcgcc aacggctaac tcttcaatca
      541 ggaactggaa gtcaaagtcg ccagaaatcg ccaccacatt gcgtttcgga tcagcggcac
      601 aaacccctag cgcagccgga atcgtccagc ctaacggacc agcctgacca cagttgatcc
      661 agtggcggtc tttaaagaca tgcagcattt gtgccgcagc gatttgtgac agaccgatgg
      721 tggtgacata acaaacatcg cgaccaaagg ctttgttcat ctcttcatac acgcgctgcg
      781 gtttcaccgg cacgttgtcg aagtaggttt tgcgcagcaa agtgcgtttg cgctgctggc
      841 agtcggcgac ccattcttta cgacacggca gacgacccgc tttttgcatc tcctgcgcca
      901 cttcaaccag cagtgtcagc gccgctttag catcagagac aatgccgaga tccggacaca
      961 gcacgcgacc aatttgcgtc ggctcaatat cgatatgaac gattttgcgc ccttcggtgt
     1021 atttctctac cgaaccggta tgacggttag caaaacggtt accgatacca aacaccatgt
     1081 cggacgccag caacgttgcg ttaccgtaac gatgcgcggt ttgcagaccg accatcccgg
     1141 ccatcagttc atgatcgtcc gggatacagc cccagcccat cagcgttggg atcaccggaa
     1201 cgctggtcag ttcagcaaac tgttgtaaca gtgcagctgc gtcagcattg attaccccgc
     1261 ccccggcaac aatcaccgga cgttcggcct ggattaacat ttctacagct ttttcgatct
     1321 gcatacggct ggcagcaggt ttgtagaccg gcagcggttc gtacatgtca ggatcaaact
     1381 cgatttccgc aacctgaacg tcgaacggta aatccaccag taccggaccc ggacgaccag
     1441 aacgcatcag gtgaaatgcc tgttgcagca cgcgaggcac cagcgccgct tcacgaactg
     1501 taaccgccat tttgctgacc ggtttagcaa ttgcttcaat atctacggcc tgaaaatctt
     1561 ctttatgcag acgggcgcgc ggtgcctggc cggtaatgca cagaatagga atggaatcag
     1621 cagaagcgga atagagcgcg gtgatcatgt ccgtgcccgc aggaccggaa gtccccagac
     1681 atacgccgat attccctgcc gttgcgcggg tataaccttc cgccatgtgc gaagcacctt
     1741 ccacatgacg cgccagaatg tgacgaatac cgccgtgctt acgcatcgct gagtagaacg
     1801 gattgattgc agctcccgga acaccgaagg cggtggtgat accttctttc tccagcacat
     1861 acattgccgc gtcaacggct ctcatttttg ccattttatt cctatctcta tttattggaa
     1921 aatttttcca actttcaaat tttgtcaaaa aaacccgctc cgcagagcgg gatgcgacag
     1981 acattatgga tgtgctttca gtcccaacgc cgtgctgata tcgcgggcgg tgtctctgac
     2041 cagctcaccc tgactgacaa aacgatcttc tgtcagtctt gatgaaggcc cggagatgga
     2101 gatagcggca acaacgctac cgacatcatc gtaaattgct gaagctatgc aattcagacc
     2161 tacaacatgc tcttctttat ctacggtata gcccagttca cgcgcttgtt ccaggtcctt
     2221 cagcaaggtg ggcatatcca caagcgtagt tggcgtaaac tgctgcaaac cggtttgcag
     2281 aatgatgctc atcaactcct cttccgccag cggataaagc agcgctttgc ccgcaccgga
     2341 agcatgcagc ggcagacgac tgcccagtgg cgcacacatc ctgaccattg atttacactc
     2401 taactgacca attaatactg cttcattgcc gttacggatc gcgacattga ccgtttcgcc
     2461 ggaaagtaac atcaggcggc gcataaacgg cccggcgacg gagaggacat cgcggttatg
     2521 gatgtacgcc gcaccgacgt taaagacacc taatcctata tgccaccagc ctaattgact
     2581 gtcctgatag acaaaatccg ctgcttgtaa aaccttcagc aagcgaaagg tcgtggagag
     2641 cggcaaatcc agattgagag aaatatcgct aaccgacgaa cttcccccac ttttttccag
     2701 atattgcaga atcgcaattc cccgctctaa cgcctgtgcg cccttctgtg ccacaggctc
     2761 cgcctgtcct ggcctgccgc gccgtctaac ttccgtcata cctacgttaa ctccgaccta
     2821 caagtgagca taaacaatga acaattagtt tatcttatgc aagtcggttg caggcgtcac
     2881 gcaaaacaga gttcctgttc aggaatactt tcaacatcac agttgtcact gccgccgcga
     2941 tcgatggtca gaaaatcggt gacgcgctgc caggcgaaaa gtgggtgatg ccagacgtta
     3001 cgatggtaat tcactccctg ttcgccgttg gtgataaacg cccgcagcgt tgacaggtct
     3061 ggtttgtcgt cgcctaacgc cacgaccacc acaaacactt cacctttcat cgggataaag
     3121 gcctgagtgc ccagcggatg acgttcgagt tcgtgaatgg tcagcggcag attcgccggt
     3181 tgcgcgcggt taatgctaat aagcgtacgg tcttgctcaa gaatctcaac cagcgccaaa
     3241 tcgtggtaac gctccaccag gccattgtta atatggaaaa aatcccgttg ctgagtttcg
     3301 attacgtcgc cataagcact aaaggcttcc tgacttaacg gtaatacctg aagtttcatc
     3361 tttttgtcct tgtaacataa ttccgttcaa ccaccgccga ccggtcagct tgggttcaat
     3421 aacaggcaat ctaaaacctt aagagaacaa catcaataca aaagttggaa tatttttcca
     3481 aaactagatt tagtccacaa attgaacagg gttatcatgt aaaaatactg ataaatcaga
     3541 ggataagaaa atcacgcaac ttgcggattt aaaaggggat acctgaagat gttcgatcca
     3601 gaaaccttgc ggactttcat tgcggttgct gaaacaggaa gtttttcaaa agcggcagaa
     3661 cgattatgta aaaccacggc gacgatcagt tatcgcatta aacttctgga agagaatacc
     3721 ggagtagcgc tgtttttccg tacgactcgt agcgtaacgt tgacagcggc tggcgagcat
     3781 ctactttccc aggccagaga ctggctgagc tggctggaaa gtatgcccag caagctgcaa
     3841 caggtgaatg atggcgtgga acgccaggtg aatattgtca tcaacaacct gctctataac
     3901 ccccaggccg tcgcccagtt gctggcgtgg ctgaatgaac gttacccctt tacccagttt
     3961 cacatctccc gacaaatcta tatgggcgtc tgggactcgc tattgtacga aggtttttcg
     4021 ctggctatcg gcgtcacggg aactgaggcg ctggcaaata cctttagtct tgatccctta
     4081 ggatcggtgc aatggcgatt tgtcatggcg gcggatcatc cgctggcgaa cgttgaagag
     4141 ccgctaacag aagcgcagtt gcgtcgcttt ccggcggtca atattgaaga cagcgcccgc
     4201 accttaacca aacgcgtcgc ctggcgattg ccagggcaaa aagagattat tgttcctgat
     4261 atggaaacga aaatcgccgc ccatctggcg ggcgttggca ttggtttttt gccaaaatcg
     4321 ctttgccagt caatgatcga taatcaacaa ctggtcagcc gggtaatccc aac
//
LOCUS       DAJVSY010000232         4296 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.234, whole genome shotgun sequence.
ACCESSION   DAJVSY010000232 DAJVSY010000000
VERSION     DAJVSY010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4296)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4296)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4296
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.234"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            46..2208
                     /gene="ybiO"
                     /locus_tag="OQQ19_003968"
     CDS             46..2208
                     /gene="ybiO"
                     /locus_tag="OQQ19_003968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001267224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel protein"
                     /protein_id="HCS1805404.1"
                     /translation="MRWILFILFCLLGAPAHAVSIPGVTTTTTTDSTTEPAPEPDIEQ
                     KKAAYGALADVLDNDTSRKELIDQLRTVAATPPAEPVPKIVPPTLVEEQTVLQKVTEV
                     SRHYGEALSARFGQLYRNITGSPHKPFNPQTFSNALTHFSMLAVLVFGFYWLIRLCAL
                     PLYRKMGLWARQKNRERSNWLQLPAMIIGAFIIDLLLLALTLFVGQVLSDNLNAGSRT
                     IAFQQSLFLNAFALIEFFKAVLRLIFCPNVAELRPFTIHDETARYWSRRLSWLSSLIG
                     YGLIVAVPIISNQVNVQIGALANVIIMLCMTVWALYLIFRNKKEITQHLLNFAEHSLA
                     FFSLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFVSG
                     MFSRWLAKTITLSPHTQRNYPELQKRLNGWLSAALKTARILTVCVAVMLLLSAWGLFD
                     FWNWLQNGAGQKTVDILIRIALILFFSAVGWTVLASLIENRLASDIHGRPLPSARTRT
                     LLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGV
                     FIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGI
                     GSVVANYDVDRHEDADKANQALKDAVAELMENEEIRGLIIGEPNFAGIVGLSNTAFTL
                     RVSFTTLPLKQWTVRFALDSQVKKHFDLVGVRAPVQTY"
     gene            complement(2268..3194)
                     /gene="rlmF"
                     /locus_tag="OQQ19_003969"
     CDS             complement(2268..3194)
                     /gene="rlmF"
                     /locus_tag="OQQ19_003969"
                     /EC_number="2.1.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415328.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(1618)-N(6))-methyltransferase
                     RlmF"
                     /protein_id="HCS1805405.1"
                     /translation="MSAQKPGLHPRNRHHSRYDLATLCQVNPELRQFLTLTPAGEQSV
                     DFANPLAVKALNKALLAHFYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIP
                     ANASILDIGVGANCIYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLR
                     RQKESGAIFNGIIHKNEQYDATLCNPPFHDSAAAARAGSERKRRNLGLNKDDALNFGG
                     QQQELWCEGGEVAFIKKMIEESKGFAKQVMWFTSLVSRGENLPPLYRALTDVGAVKVV
                     KKEMAQGQKQSRFIAWTFMNDEQRRRFVNRQR"
     gene            3470..3729
                     /locus_tag="OQQ19_003970"
                     /pseudo
     CDS             3470..3729
                     /locus_tag="OQQ19_003970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415327.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
     gene            3994..>4296
                     /locus_tag="OQQ19_003971"
     CDS             3994..>4296
                     /locus_tag="OQQ19_003971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HCS1805406.1"
                     /translation="MENNRNFPARQFHSLTFFAGLCIGITPVAQALAAEGQTNADDTL
                     VVEASTPSLYAPQQSADPKFSRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPGV"
BASE COUNT          998 a         1129 c         1077 g         1092 t
ORIGIN      
        1 gcatctatac ttatcttttt gctctgtttt ctcactggag gagtcatgcg gtggatcctg
       61 ttcatcctct tctgcctgct gggcgcacct gcccacgcgg tatccatacc cggcgttaca
      121 accacaacga caacggactc aacgactgaa ccggccccgg aaccggatat cgaacaaaaa
      181 aaagcggcct atggcgcact agcggatgtg ctggataacg acacctcgcg taaagaattg
      241 atcgaccagt tgcgtactgt cgccgcgacg ccccctgcgg aaccggtccc gaagatcgtg
      301 ccgccgacgc tggttgaaga gcaaaccgtg ctgcaaaagg tcaccgaagt cagccgccat
      361 tatggtgaag ccctttccgc ccgcttcggg caactttatc gcaatattac cggctccccg
      421 cataagccgt ttaatccaca aacattcagc aatgcgctga cccatttttc aatgttagcg
      481 gtattagtgt ttggttttta ctggctgatt cgcctgtgcg cactgccgct gtatcgcaaa
      541 atgggcctgt gggcgcggca aaaaaatcgt gagcgcagta actggttgca gcttccggcg
      601 atgattatcg gggcgtttat tatcgaccta ctgttactgg cactgacatt atttgtcggc
      661 caggtattaa gcgacaacct gaatgcaggc agtcgcacca tcgctttcca acaaagtttg
      721 tttctcaacg cctttgccct gattgaattt ttcaaagctg tactacgcct gattttttgc
      781 ccaaacgtgg ctgaactgcg cccgttcacg attcatgacg agaccgcccg ttactggagt
      841 cgtcgcctga gctggttaag cagtttgata ggttatggcc tgattgtggc cgtgccgatt
      901 atctctaatc aggtgaatgt acagataggt gcgctggcga acgtcatcat tatgctgtgc
      961 atgaccgtct gggcgttgta cctgatcttt cgcaataaaa aagagattac ccaacatttg
     1021 ctcaactttg cggagcattc gctggccttt ttcagcctgt ttatccgcgc ctttgcgctg
     1081 gtgtggcact ggctggcaag cgcctatttt atcgtgctgt ttttcttttc gttgttcgat
     1141 ccgggcaaca gcctgaaatt tatgatgggt gcaacggtgc gcagcctggc gattattggt
     1201 atcgcagcgt ttgtttccgg tatgttttcc cgctggctgg cgaaaaccat caccctctcg
     1261 ccacatactc agcgtaacta tccggagttg caaaaacggc tgaatggctg gctttcggcg
     1321 gcgctgaaaa cggcgcgtat tctgaccgtc tgcgtggcgg taatgttgct gttgagcgca
     1381 tggggattgt tcgatttctg gaactggctg caaaacggcg cggggcagaa aaccgtagat
     1441 atcctgatcc gtatcgcact tattcttttt ttctcggcgg ttggctggac ggtgctcgcc
     1501 agtttgatcg aaaaccggct ggcttcggat attcatggcc gcccgctacc cagcgcccgt
     1561 acgcgtaccc tgctgacgct gtttcgtaac gcgctggcgg tgattatcag taccatcacc
     1621 atcatgattg tgttgtcgga aatcggcgtc aatatcgcgc cattgctggc aggtgccggg
     1681 gcattaggtc tggctatctc gtttggttcg caaacgctgg tgaaagatat cattaccggg
     1741 gtgtttattc agtttgaaaa cggcatgaac actggagatt tggtgactat cgggccgttg
     1801 accggcacag tggaacggat gtcgattcgc tccgtgggcg tgcgccagga taccggggcg
     1861 tatcacatca ttccgtggtc ttcgataacc acctttgcta acttcgtccg cggtattggt
     1921 tcggtagtgg caaactacga tgttgatcgc catgaagatg ctgataaagc caatcaggca
     1981 ctgaaagatg cggtagcgga attgatggaa aacgaagaaa ttcgcgggct gattattggt
     2041 gaaccgaatt ttgccgggat tgtcggctta agcaataccg cgtttacact gcgtgtttcg
     2101 ttcaccacgc tgccactcaa acagtggacg gtacgctttg ccctcgacag ccaggtgaaa
     2161 aaacatttcg acctggtggg cgttcgcgcg ccagtgcaga cttattaggt gctgcctact
     2221 ccgggcgcga ccccggctga accgttaccg ccgggggagc caacgcttta acgctggcga
     2281 ttgacaaaac ggcggcgctg ctcgtcgttc ataaaggtcc aggcaataaa gcgactctgc
     2341 ttttgcccct gggccatctc tttttttacc accttcaccg cgcccacgtc ggtcagagca
     2401 cgatacaacg gcggtaagtt ttcaccacga gataccagcg aggtaaacca catcacctgc
     2461 ttcgcgaagc ctttgctctc ttcaatcatc tttttgataa aggcgacttc accaccttca
     2521 caccacaact cctgttgctg accaccaaag ttcagtgcat cgtctttgtt cagccccagg
     2581 ttacggcgtt tacgctcact acctgcccgc gctgcagcgg cggaatcgtg gaatggcggg
     2641 ttacacaagg tcgcgtcgta ttgctcgttt ttatggatga tgccgttaaa aattgcccca
     2701 ctctcttttt gccgacgcag acgaatggcg cggttaagcc ccggattagc actgataatc
     2761 gcctgcgcac tgcttaacgc ctggctgctg gtttcactac cggtaaaacg ccagccatat
     2821 tcatgtacgc caatcagcgg ataaatacag ttcgcaccaa cgccgatatc cagaatgctg
     2881 gcattcgctg gaattgttcc gcttgcttca gccagtaaat cggcaaggtg atgaatataa
     2941 tccgcccggc cgggtactgg tgggcagaga aaaccgtcgg ggatatccca gttcgctacg
     3001 gcgtaaaaat gggccagcaa cgccttattg agcgccttca ccgccagcgg attggcaaag
     3061 tctacgcttt gctccccggc gggtgtaagc gtgaggaatt gcctgagttc aggattgacc
     3121 tgacaaagcg tggcgagatc gtagcggctg tgatgacggt tgcgcggatg caaccccggt
     3181 ttctgggcgg acatagcatt ctcctttaag cagcggcgta agatacccgc ataacgcgac
     3241 agggtaaata tctggctgcg tttatcattc cccaaaacct taacatggct atggtttatg
     3301 gcaattcatc ataaaaatca gcattatgca tgtcattgat ttgtcttatt ttgtaaaaat
     3361 atatcgttca aaaaataagc acatctctgt caattttttg cgtcatttgc atcgcgcagg
     3421 cgacctacac ttatcaggca ctacccgttg tatttatgag gatgtcatta tgaaaaagtg
     3481 cctcacacta ctgattgcca ccgtcctgag cagaatctct ctcacggctt atgccgcgca
     3541 accgatgagt aacctggaca gcggtcagct acggcccgcg gtaccgtttc ggcaactggc
     3601 gcatcaaacc taagcgatct ggaggataaa ctggcagaaa aagcgcgcga acaaggcgcg
     3661 aaaggttatg tcattaattc cgcaggcgga aatgaccaga tgttcggtac tgcaaccatc
     3721 tacaaataac cccaccaacg taactgcatt cgcctctgga tgcagttttc gcctgttttg
     3781 taatcaaaaa acatcaaata tgaactcaat gtaaataaat gtatttcttt ttcgcgcaat
     3841 gggtgataga aaatcgcgcc aagtgataat gtttatcaaa attattatca cttgcatgaa
     3901 cactatcacg ggattaacag tggcatcgca tccgcagaga tgctttctcg tgacagtgaa
     3961 aatttcaaca tataagaaaa agtcacctgc aaaatggaaa acaatcgcaa tttccctgcc
     4021 agacaatttc attcgctcac gttctttgcc ggtctttgta ttggcatcac gcctgtggct
     4081 caggcactcg ccgccgaagg gcaaactaac gcggatgaca cgctggttgt cgaagcatca
     4141 acgccttcgc tttatgcgcc acaacaatct gccgatccga aattctcgcg tccggtagcg
     4201 gatactaccc gcacgatgac ggtgatttct gaacaagtga ttaaagatca gggcgcaacc
     4261 aaccttaccg acgcgctcaa aaacgtcccc ggcgtg
//
LOCUS       DAJVSY010000233         4269 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.235, whole genome shotgun sequence.
ACCESSION   DAJVSY010000233 DAJVSY010000000
VERSION     DAJVSY010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4269)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4269)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4269
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.235"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..213)
                     /locus_tag="OQQ19_003972"
     CDS             complement(<1..213)
                     /locus_tag="OQQ19_003972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416381.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HCS1805407.1"
                     /translation="MLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKF
                     RASGQPVFLVRVGWSADYAEALKQPVD"
     gene            523..2295
                     /gene="aspS"
                     /locus_tag="OQQ19_003973"
     CDS             523..2295
                     /gene="aspS"
                     /locus_tag="OQQ19_003973"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HCS1805408.1"
                     /translation="MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI
                     VQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTII
                     NRADVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDI
                     ETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD
                     EDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAE
                     RRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQI
                     DEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEAILDRTAAQDGDMI
                     FFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHP
                     FTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEE
                     EQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTE
                     APSFANPTALAELSIQVVKKAENN"
     gene            2413..2865
                     /gene="nudB"
                     /locus_tag="OQQ19_003974"
     CDS             2413..2865
                     /gene="nudB"
                     /locus_tag="OQQ19_003974"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HCS1805409.1"
                     /translation="MKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVE
                     EGETAPQAAMREVKEEVTIDVVAEQLTLIDSQRTVEFEIFSHLRHRYAPGVTRNTESW
                     FCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA"
     gene            2894..3634
                     /locus_tag="OQQ19_003975"
     CDS             2894..3634
                     /locus_tag="OQQ19_003975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCS1805410.1"
                     /translation="MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPD
                     ANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECL
                     SDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVITFEKGDEDTIMEAALEAGAE
                     DVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMR
                     LIDMLEDCDDVQEVYHNGEISDEIAATL"
     gene            3669..4190
                     /gene="ruvC"
                     /locus_tag="OQQ19_003976"
     CDS             3669..4190
                     /gene="ruvC"
                     /locus_tag="OQQ19_003976"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005068993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HCS1805411.1"
                     /translation="MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSR
                     LKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY
                     AARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQM
                     SESRLNLARGRLR"
BASE COUNT         1055 a         1061 c         1199 g          954 t
ORIGIN      
        1 atcaaccggc tgttttaatg cttcggcgta atcggcagac cagccaactc gcaccagaaa
       61 cacgggctga ccgctggcgc gaaatttcgc cgccagcttc ccggcgcgat taactacctc
      121 atcggcagta tgtggaccac cggcaaaagg taagatgcct tcttgtaaat cgatcaccac
      181 caacgcagtg gttttagcat taagttcaag catgctgact cctgaaaaaa caaaatcgtg
      241 cctcacacct taatgcgatt agccgatggc ggaacgacaa attttgttaa tttttatgag
      301 ttcgggcaac acctttatag caaactggcg tagagtctga tttcaggccc gatataaagt
      361 ggtaacgagg cgttccagcg cgggctaggc tcttacggtg cggcagaatt tccagtataa
      421 tagccgcctt ttttcattca gttgtgacat acagctaacg ctgcgacttg gtcacctgcg
      481 cagcaggggg catccgccgg cagctaagtt aagggatatc tcatgcgtac agaatattgt
      541 ggacagctcc gtttgtccca cgtggggcag caggtgactc tgtgtggttg ggtcaaccgt
      601 cgtcgtgatc ttggtagcct gatcttcatc gatatgcgcg accgcgaagg tatcgtgcag
      661 gtatttttcg atccggatcg tgcggacgcg ttaaagctgg cctctgaact gcgtaatgag
      721 ttctgcattc aggtcacggg caccgtacgt gcgcgtgacg aaaaaaatat taaccgcgat
      781 atggcgaccg gcgaaatcga agtgctggcg tcctcgctga ctatcatcaa ccgcgcagat
      841 gttctgccgc ttgactctaa ccacgtcaac accgaagaag cgcgtctgaa ataccgctac
      901 ctcgacctgc gtcgtccgga aatggctcag cgcctgaaaa cccgcgctaa aatcaccagc
      961 ctggtgcgcc gttttatgga tgaccacggc ttcctcgaca tcgaaactcc gatgctgacc
     1021 aaagccacgc cggaaggcgc gcgtgactac ctggtgcctt ctcgtgtgca caaaggtaaa
     1081 ttctacgcac tgccgcaatc cccacagttg ttcaaacagc tgctgatgat gtccggtttt
     1141 gaccgttact atcagatcgt taaatgcttc cgtgacgaag acctgcgcgc tgatcgtcag
     1201 cctgagttta ctcagatcga tgtggaaact tctttcatga ccgcgccgca agtgcgtgaa
     1261 gtgatggaag cgctggtgcg tcatttgtgg ctggaagtga agggcgtgga tctgggcgat
     1321 ttcccggtaa tgacctttgc ggaagcagaa cgccgttatg gttctgataa accggatctg
     1381 cgtaacccga tggaactgac cgacgttgcc gatctgctga aatctgttga gtttgcagta
     1441 tttgcggggc cggcgaacga tccgaaaggc cgtgttgccg ctctacgtgt tccgggtggc
     1501 gcatcgctga cccgtaagca gatcgacgaa tacggtaact tcgttaaaat ctacggcgcg
     1561 aaaggtctgg cttacatcaa agttaacgaa cgcgcgaaag gtctggaagg tatcaacagc
     1621 ccggtagcga agttccttaa tgcagaaatc atcgaagcca tcctggatcg tactgccgcg
     1681 caagatggcg atatgatttt cttcggtgcc gacaacaaga aaattgttgc cgacgcgatg
     1741 ggcgcactgc gcctgaaagt gggtaaagac cttggtctga ccgacgaaag caaatgggca
     1801 ccgctgtggg ttatcgactt cccgatgttt gaagacgacg gtgaaggcgg cctgacggca
     1861 atgcaccatc cgttcacctc accgaaagac atgactgctg cagaactgaa agctgcaccg
     1921 gaaaatgcgg tggcgaacgc ttacgatatg gtcatcaatg gttacgaagt gggcggtggt
     1981 tcagtacgta tccataatgg tgatatgcag cagacggtgt ttggtattct gggtatcaac
     2041 gaagaggaac agcgcgagaa attcggcttc ctgctcgacg ccctgaaata cggtactccg
     2101 ccgcacgcag gtctggcatt cggtcttgac cgtctgacca tgctgctgac tggcaccgac
     2161 aatatccgtg acgttatcgc cttcccgaaa accacggcgg cagcgtgtct gatgactgaa
     2221 gcaccgagct ttgctaaccc gactgcactg gctgagctga gcattcaggt tgtgaagaag
     2281 gcagagaata actgatatga ctcaaataca cgaaatcatt cgcgttgcat caaggcggca
     2341 attgagtgaa ctcccatgag catagataac tatgtgaatg ggatgagcga aggcagtcaa
     2401 cgaagaggca gcgtgaagga taaagtgtat aagcgtcccg tttcgatctt agtggtcatc
     2461 tatgcacaag atacgaaacg ggtgctgatg ttgcagcggc gtgacgatcc cgatttctgg
     2521 cagtcggtaa ccggcagcgt ggaagagggt gaaaccgcgc cgcaagctgc catgcgcgaa
     2581 gtaaaggaag aggtcaccat tgatgttgtc gctgaacaac tgaccttaat tgacagtcag
     2641 cgcacggtag agtttgaaat tttttcacat ttacgtcatc gctatgcgcc gggcgtgacg
     2701 cgtaatacgg aatcatggtt ctgtcttgcg cttccgcacg agcggcagat cgttttcact
     2761 gaacatctgg cttacaagtg gcttgatgcg cctgctgcgg cggcgctcac taagtcctgg
     2821 agcaaccggc aggcgattga acagtttgta attaacgctg cctgaacagg cagggctatc
     2881 tggagatatt tttatggcag gtcatagtaa atgggccaac accagacatc gtaaagctgc
     2941 gcaggatgct aagcgcggta aaatcttcac taaaatcatt cgtgagctgg taaccgcggc
     3001 taagctgggc ggtggcgatc cggacgctaa cccgcgtctg cgtgcggcgg tggataaagc
     3061 actgtctaac aacatgaccc gtgacacact gaaccgcgca attgcacgtg gtgtgggcgg
     3121 tgatgatgat gcaaacatgg aaaccatcat ctacgaaggt tacggtcctg gcggcacggc
     3181 aatcatgatt gaatgtctgt ctgacaaccg caaccgtacc gttgctgaag tgcgtcatgc
     3241 attcagcaaa tgtggcggta acctcggtac agatggttcc gtagcctatc tgttcagcaa
     3301 aaaaggcgtg atcaccttcg agaaaggcga tgaagacacc atcatggaag cagctctgga
     3361 agcaggtgct gaagacgttg tgacctatga tgacggcgcg attgatgtct acactgcatg
     3421 ggaagaaatg ggtaaagtgc gcgacgctct ggaagcggca ggtctgaaag cagacagcgc
     3481 ggaagtttcc atgatcccgt ccaccaaagc tgatatggat gcagaaaccg caccgaaact
     3541 gatgcgtctg atcgatatgc tggaagattg cgacgacgtg caggaagttt accataacgg
     3601 tgaaatctct gatgagattg cagcgactct ctgatgaggc ctgctaaaca gcaaaacgga
     3661 gacgcgtgat ggctattatt ctcggcattg acccgggttc gcgcgtgacc ggctatggcg
     3721 tcatccgcca ggtaggcagg caactgtcct acctgggtag cggatgcata cgcaccaagg
     3781 tggatgattt accgtctcgt ctgaagctca tctatgcggg cgtgacggaa atcatcaccc
     3841 agttccagcc agattatttc gccattgaac aagtctttat ggccaaaaat gccgactcgg
     3901 ctctgaaact ggggcaggcg cgcggcgtgg cgattgtggc ggcggtgaat caggaattgc
     3961 cggtatttga atatgcggca cgtcaggtaa agcaaacggt ggtaggtatt ggtagtgccg
     4021 aaaaaagtca ggtgcagcat atggtccgca ccttgctgaa actgcccgct aatccacagg
     4081 cggatgccgc cgatgcgtta gctatcgcga ttacccattg tcacgtcagc cagaatgcaa
     4141 tgcagatgag cgaatcgcgg ctgaacctgg cgagagggcg actgcgttaa gttataccgc
     4201 ctcggtcagt tcaggctgag gcgtttcaac tccctccgcg tgaatcaaca ccaaacccgg
     4261 atgatgcca
//
LOCUS       DAJVSY010000234         4203 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.236, whole genome shotgun sequence.
ACCESSION   DAJVSY010000234 DAJVSY010000000
VERSION     DAJVSY010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4203
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.236"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            112..615
                     /gene="yeaK"
                     /locus_tag="OQQ19_003977"
     CDS             112..615
                     /gene="yeaK"
                     /locus_tag="OQQ19_003977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mischarged aminoacyl-tRNA deacylase"
                     /protein_id="HCS1805412.1"
                     /translation="MTEMAKGSVTHQRLIALLSQEGANFRVVTHEAVGKCEAVSEIRG
                     TALGQGAKALVCKVKGNGVNQHVLAILAADQQADLSQLASHIGGLRASLASPAEVDEL
                     TGCVFGAIPPFSFHPKLKLVADPLLFERFDEIAFNAGMLDKSVILKTTDYLRIAQPEL
                     VNFRRTA"
     gene            complement(616..720)
                     /locus_tag="OQQ19_003978"
     CDS             complement(616..720)
                     /locus_tag="OQQ19_003978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416302.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805413.1"
                     /translation="MNDQMFVETLIITSSFFAIAVVLVLSVLLIERTG"
     gene            889..1335
                     /locus_tag="OQQ19_003979"
     CDS             889..1335
                     /locus_tag="OQQ19_003979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HCS1805414.1"
                     /translation="MFDVTLLILLGLAALGFISHNTTVAVSILVLIIVRVTPLSTFFP
                     WIEKQGLSIGIIILTIGVMAPIASGTLPPSTLIHSFLNWKSLVAIAVGVIVSWLGGRG
                     VTLMGSQPQLVAGLLVGTVLGVALFRGVPVGPLIAAGLVSLIVGKQ"
     gene            complement(1292..2113)
                     /gene="nimR"
                     /locus_tag="OQQ19_003980"
     CDS             complement(1292..2113)
                     /gene="nimR"
                     /locus_tag="OQQ19_003980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NimR"
                     /protein_id="HCS1805415.1"
                     /translation="MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLI
                     LALHGAITCTVENALWMVPPQYAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTC
                     CTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKI
                     RTMVEMMAKGPVEWGSLGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQG
                     LVKGDTVQKVAHTLGYDSTTAFITMFKKGLGQTPGRYIAGLTTVSPQSAKPDPRQ"
     gene            2210..3406
                     /gene="nimT"
                     /locus_tag="OQQ19_003981"
     CDS             2210..3406
                     /gene="nimT"
                     /locus_tag="OQQ19_003981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005117270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-nitroimidazole transporter"
                     /protein_id="HCS1805416.1"
                     /translation="MTCSTSLSGKNRIVLIAGILMIATTLRVTFTGAAPLLDTIRSAY
                     SLTTAQTGLLTTLPLLAFALISPLAAPVARRFGMERSLFAALLLICAGIAIRSLPSPY
                     LLFGGTAVIGGGIALGNVLLPGLIKRDFPHSVARLTGAYSLTMGAAAALGSAMVVPLA
                     LNGFGWQGALLMLMCFPLLALFLWLPQWRSQQHANLSTSRALHTRGIWRSPLAWQVTL
                     FLGSNSLVYYVIIGWLPAILISHGYSEAQAGSLHGLLQLATAAPGLLIPLFLHHVKDQ
                     RGIAAFVALMCAVGAVGLCFMPAHAITWTLLFGFGSGATMILGLTFIGLRASSAHQAA
                     ALSGMAQSVGYLLAACGPPLMGKIHDANGNWSVPLMGVAILSLLMAIFGLCAGRDKEI
                     RSYPVL"
     gene            3446..3793
                     /locus_tag="OQQ19_003982"
     CDS             3446..3793
                     /locus_tag="OQQ19_003982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310528.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 domain-containing protein"
                     /protein_id="HCS1805417.1"
                     /translation="MNIQCKRVYDPAEQSDGYRVLVDRLWPRGIKKTDLALDEWDKEI
                     TPSTELRKAFHGEVVDFTTFREQYLAELAQHEQEGKRLADIAKKQPLTLLYAAKNTTQ
                     NHALVLADWLRSL"
     gene            complement(3815..4069)
                     /gene="yoaF"
                     /locus_tag="OQQ19_003983"
     CDS             complement(3815..4069)
                     /gene="yoaF"
                     /locus_tag="OQQ19_003983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing lipoprotein YoaF"
                     /protein_id="HCS1805418.1"
                     /translation="MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQK
                     GGTLIPVSTAQGVSNNCKLPGGETIDEWALWRRDHPAGEK"
BASE COUNT          967 a         1065 c         1043 g         1128 t
ORIGIN      
        1 catgatgcgt ataaagcttc cgatgagcgt ttatatgtca ataagcagaa caaaaacagc
       61 cgttcatgat aaccttctgt ggttgtttgc ttgtaatctc aggagcgtga aatgactgaa
      121 atggctaaag gaagcgtgac gcatcagcgg ttaatcgctt tattatcaca agaaggtgct
      181 aacttccgcg tcgttaccca tgaagcggta ggtaaatgtg aagcggtgtc agaaattcgt
      241 ggcaccgctt taggccaggg agctaaggca ctggtatgta aagtcaaagg caatggcgta
      301 aatcaacatg ttctggcgat cctcgctgcc gatcaacagg ccgatctgag ccaacttgcc
      361 agccatatag gcggattacg cgcttcgtta gccagccctg ctgaagtcga tgaactcaca
      421 ggctgtgtct tcggcgcgat cccccctttc agcttccatc caaaactcaa actggttgcc
      481 gaccctctac tcttcgaacg atttgatgaa atcgccttca atgcagggat gctggataaa
      541 tccgttattt tgaaaaccac ggattatttg cgcattgcgc aaccagaact ggtcaatttc
      601 cgccgcactg cgtaactagc ctgtccgttc aataagcaga acggacaaaa ccagcacaac
      661 agcaatggca aaaaacgatg acgtgataat cagtgtctcg acgaacattt gatcgttcat
      721 agcatgcccc cgggagatag ctgttttcac gttattgtta gcgtgcacaa atggcagttt
      781 gatgacagtt cgcctgattt ttatgcaaaa aacgtaaaga ttttctactt ccttcctgca
      841 gcaagcgtaa agtaagcagg cttattattt tttggcaagg aaaccacgat gtttgatgtc
      901 actttgctga tcctgctcgg gttagctgcg ctgggcttta tcagtcataa caccactgtc
      961 gccgtttcaa ttctggtgtt gatcattgtc cgcgtcacac cgttaagcac ctttttcccg
     1021 tggattgaaa aacaggggct aagtatcggg ataatcattc tgacgattgg cgttatggcc
     1081 cccatcgcca gcgggacgct accgccctca accttgattc actcgtttct gaactggaaa
     1141 tcgctggtgg caattgcagt aggcgtgatt gtctcctggc tgggtgggcg cggcgtgacc
     1201 ttaatgggca gccagccgca actggtcgcc gggctgctgg taggcactgt tttaggcgtg
     1261 gcgctgtttc gcggcgtacc ggtcggcccg cttattgccg cgggtctggt ttcgctgatt
     1321 gtggggaaac agtagttaat cccgcaatat atcggcctgg cgtttgcccc aggcctttct
     1381 taaacatagt aataaaggcc gttgttgaat cataccccag cgtatgagca actttctgta
     1441 cagtatcgcc tttcactaat ccctgaagtg ccataatcag ctgtaactgc tgacgccact
     1501 ggcgaaaact caaccccgtc tcttttacga tcagtcgcgc aagattgcgt tcactcatcg
     1561 caaaaaagcc agcccattgc cctaatgacc cccactcgac gggccctttc gccatcatct
     1621 ccaccatcgt gcggatttta ggatgagaag aaacgggcag gtgcagctgt tgttgtggct
     1681 gctgagggag ttcatcaaac aggacctgta ttaatctgcg ggtcatcggc tcagcacgct
     1741 gagtcgtcgt cctgtttgcc agggttaaaa tcaattcccg gcataagggc gatattttca
     1801 atgtgcaaca tgttgtcggc attgtcactg cgctgggttc gataaacaga aaacagagtt
     1861 cagcgttagc tgtcacttga ttgctatgtt ccaccccgcc cggtatccaa accgcatatt
     1921 gcggcggcac catccacaaa gcattttcca ccgtacaggt aattgcacca tgtaatgcta
     1981 gtatcagctg tcctttgcgg tgctgatgta caggactggt taactcatcc gttccggcgt
     2041 gaatacaaaa tgcgaccgcg gcttcatggt gtcggtcggg ttcatagcca ttgagattca
     2101 acctgtgcat cattttgtcc gaatttagcg ataatttgtc attttagctt gattcaacat
     2161 aacaataaaa acggtaaggt acagcctcgt ttgtaacaat gagaagcata tgacctgttc
     2221 aacttcatta agcggcaaaa acaggattgt ccttatcgct ggcattctga tgattgccac
     2281 aacattacgc gtcaccttta ccggcgcagc accgttactg gatacgattc gttccgctta
     2341 ctcgctgacg acagcgcaaa ccggcttatt gaccaccctg ccattattgg cctttgcgct
     2401 aatctcacct ttggccgccc cggtagcgcg acgttttggt atggaacgta gcctgtttgc
     2461 cgcgttactt ttgatctgtg ctggtatcgc aattcgctct ctcccttcgc cttacttatt
     2521 atttggcggt acagcggtca ttggcggtgg gattgcatta ggcaatgtct tactgccagg
     2581 attaattaaa cgcgatttcc ctcattccgt cgccagactt accggcgcat attccctgac
     2641 aatgggagct gcggcggcac ttggatcggc tatggtagtg ccgctggctt tgaacggttt
     2701 tggctggcaa ggcgcgttgc tcatgctgat gtgttttcct ctgctggctc tttttttatg
     2761 gctgccacag tggcgaagcc aacaacatgc aaatttgagt acctcgcgcg ccttacatac
     2821 tcggggtatc tggcgttcgc cgcttgcctg gcaggtcaca ttgtttcttg ggagcaactc
     2881 actggtctat tacgtgatta ttggctggct tccggcgatc ctcatcagtc acggctatag
     2941 cgaagcacag gcgggttcac tgcatggttt gctgcaacta gccacagcag ctcccggttt
     3001 gctgatccct cttttcttac atcatgtgaa agaccagcgt ggtattgcag cgttcgttgc
     3061 cttgatgtgc gcagtgggcg ctgttgggct ctgctttatg ccagcgcacg cgatcacctg
     3121 gactctgctt ttcggttttg gttccggcgc aacaatgata ctggggttga cgttcattgg
     3181 tcttcgggca agttctgcgc atcaggcggc ggcactctcg gggatggcac aatccgtcgg
     3241 gtatttgctg gcagcctgtg ggccgccgct aatgggtaaa atacacgatg ctaacggtaa
     3301 ctggtccgta ccactgatgg gtgttgcaat actttcacta ctgatggcga ttttcggact
     3361 ttgcgccggg agagacaaag aaattcgctc atatccggtg ctatagtgac gtgacaaatc
     3421 atgcgtgaaa gggagaacaa acacgatgaa tattcagtgc aaacgcgttt atgatccggc
     3481 tgaacagagc gatggttatc gcgtactggt cgaccgcctc tggccgcgcg gtatcaaaaa
     3541 aaccgattta gcccttgatg agtgggataa agaaatcacg ccgtcaacgg aactgcgcaa
     3601 agcctttcac ggcgaagtcg tcgattttac aacctttcgc gagcaatatc ttgcagaact
     3661 ggcgcaacac gagcaagaag gaaagcggct ggcggacatc gccaaaaaac agccgctgac
     3721 cctgctctac gcagcaaaaa acaccacgca gaaccatgcg ctggtgctgg ccgactggct
     3781 acgtagcttg tgattttagt acagcatccg gcggttattt ttcaccagcc ggatggtccc
     3841 gtcgccacaa tgcccattca tcaatcgttt caccgcccgg taatttgcaa ttgttgctga
     3901 ccccttgcgc tgtcgacact ggaatgagcg tcccgccctt ctgctggcaa tagaccgacg
     3961 ccggatttgc cataccaatc tgcggcggtt taggtgcttc tggctgagaa ggggttgaac
     4021 aaccagccag gaccagcaag caaggcagaa caaaactgat aattttcatt tattgatctc
     4081 acatatttat ccagacttag agtatcgcgg tatcgttttg ttttgcagca ctatttttat
     4141 tacattcact caaaacatat tacgtcttgt ttcatctttg ttgatgatgt tttatcatgc
     4201 ctg
//
LOCUS       DAJVSY010000235         4111 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.237, whole genome shotgun sequence.
ACCESSION   DAJVSY010000235 DAJVSY010000000
VERSION     DAJVSY010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4111)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4111)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4111
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.237"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(953..1144)
                     /locus_tag="OQQ19_003984"
     CDS             complement(953..1144)
                     /locus_tag="OQQ19_003984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="HCS1805419.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDH
                     ADELYRSCLARFGDDGENL"
     gene            1209..1532
                     /locus_tag="OQQ19_003985"
     CDS             1209..1532
                     /locus_tag="OQQ19_003985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="HCS1805420.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGRLPT
                     LAPPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQG
                     TRDDS"
     gene            1474..2232
                     /locus_tag="OQQ19_003986"
                     /pseudo
     CDS             1474..2232
                     /locus_tag="OQQ19_003986"
                     /inference="COORDINATES: protein motif:HMM:NF015397.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2210..2740
                     /locus_tag="OQQ19_003987"
     CDS             2210..2740
                     /locus_tag="OQQ19_003987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001673158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="HCS1805421.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTEKMLNDEFRKLEESVSKAVTSN
                     ETKIKDAIALFTASTEESLKKHREGVKEAMMQHRKDVLKLAGNTGMMLLGMVIFLFTV
                     SGGTLWYLGGMIQANLEEIRKQNESLEKLNAKTWGVRYHEGSNGRFLVLPEGMKAETN
                     WTMENGKQNAVRLVQE"
     gene            2747..2980
                     /locus_tag="OQQ19_003988"
     CDS             2747..2980
                     /locus_tag="OQQ19_003988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="HCS1805422.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWESAFVELQKMFSLTQRDN
                     AMLNEQVMQLSQQVQHLSERTERLSQLYSENRR"
     gene            complement(3528..3995)
                     /locus_tag="OQQ19_003989"
     CDS             complement(3528..3995)
                     /locus_tag="OQQ19_003989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014526575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805423.1"
                     /translation="MRIDISHQTRHTPPNMLPREQNCVAMALSACFRQQLNPVVNSLL
                     KERIIHSPKELEHDNAVIRALQKLQIQEVCNSTLWETAKQQLLQKSDGRYFAINSKHL
                     AFPGPGESHAFCCIKYKNAIGINGNNAETQSTHYQPYPYDKVSIWGPFPHNLT"
BASE COUNT          983 a          933 c         1226 g          969 t
ORIGIN      
        1 aaaaaaacca ccgctaccaa cggtggtttg tttgccggaa tctagagcta ccaactcttt
       61 cttccgaagg taactggctt ggtggagcac agataccaaa tgctgtcctt ctagtgtagc
      121 cgcagttagg ccaccacttc aagaactctt aatatctcaa tccaccttgt acagttacca
      181 atggctgctg ccagtggcgt taagtcgtgt cttaccgggt tggactcaag acgatagtta
      241 ccggatgagg cgcagcggtc gggctgaacg gggggttcgt gcacacagcc cagcttggag
      301 cgaacgacct acaccgaact gagataccta cagcgtgagc tatgagaaag cgccacgctt
      361 cccgaaggga gaaaggcgga caggtatccg gtaagcggca gggtcggaac aggagagcgc
      421 acgagggagc ttccaggggg aaacgcctgg tatctttata gtcctgtcgg gtttcgccac
      481 ctctgactag agcgtcgatt tttgtgatgc tcgtcagggg ggcggagcct atggaaaaac
      541 gccatcggcg cggccttctt cctgttcctg gtcttttgct cacatgttct ttccggcgtt
      601 atcccctgat tctgtggata accgcatttc gtttttgagt gagtagatac cgctcgccgc
      661 agtcgaacga ccgagcgtag cgagtcagtg agcgaggaag cggaaaagcg cctggacgtg
      721 cattttctcc ttacgcatct gtgcggcatt tcacacccgg tatggcgcac ttttcataca
      781 atccgcattg atgccgcatg gtgaagccag tatacactcc gctatcgcta cgtgactggg
      841 tcatggctgc gccccgacac ccgctaaaac ccgctgacgc gccctgacgg gcttgtctgc
      901 tcccggcatc cgctcacaga taagctgtga ccgtctccgg gagctgcatg cgtcagaggt
      961 tttcaccgtc atccccgaag cgagcgaggc aactgcggta aagctcatcg gcgtggtcgt
     1021 gaagcgattc acagatgtct gcctgttcat ccgcgtccag ttcgttgagc ttctccagca
     1081 gcgttaatgt ctggcttctg ataaagcggg ccatgttaag ggcggttttt tcctgtttag
     1141 tcactgatgc ctccgtgtaa gggggatttc tgttcatggg ggtaatgata ccgatgaaac
     1201 gcgagaggat gctcacgata cgggttactg atgatgaaca tgctcgtttg ctggaacgtt
     1261 gtgagggtaa acaactggcg gtatggatgc ggcgggtctg cctgggggag ccggttgccc
     1321 gttccgggag gctgccgaca ctggcaccgc cgttactgcg tcagctggcc gccatcggga
     1381 ataacctgaa tcagacagcg aggaaggtga acagcgggca gtggtcttcc ggtgaccggg
     1441 ttcaggtggt ggccgcactg atggccatcg gggatgagct gcgccggctg cgtctggccg
     1501 tcagggaaca ggggacgcgg gatgatagtt aagtttcatg ccaggggaaa aggtggtggc
     1561 agtggtccgg ttgattacct gctgggaagg gagcgtaacc gggaaggggc aacggtgctt
     1621 cagggtaatc cggaagaagt ccgggaactc atcgatgcca cgccatttgc gaagaaatac
     1681 acgtccggtg ttctctcgtt cgcggagaag gcgctgccag cgggaggacg tgaaaaagtg
     1741 atggcgagtt ttgagcgtgt actgatgccc ggtctcgaaa aaaatcagta cagcatcctg
     1801 tgggtggagc accaggacaa gggacggctt gagctgaatt ttgtcattcc gaacatggag
     1861 ctacagaccg gaaaacgcct ccagccgtac tacgaccggg cagacaggtc gagaattgat
     1921 gcctggcaga cgctggtgaa tcaccattac gggctgcatg acccgaacgc cccggagaac
     1981 cgccggacgc tgactctccc tgataacctg ccggaaacga aacaggcgct tgctgagagc
     2041 attacacggg ggatagacgc tctttatcat gtcggggaga taaaagaccg tcaggatgtg
     2101 attcaggcgc tcacagaggc ggggcttgaa gtggtcaggg tgacgcgaag cagtatcagc
     2161 attgcagacc cgaacggcgg gaagaatatc agactgaaag gagcattcta tgagcaatct
     2221 tttacagacg ggcgcggagt tcgagaaaaa gctgaaagag agagccgaat ctacagagaa
     2281 aatgctgaac gacgagttca ggaagctcga agaatctgta agcaaggctg tgacatcaaa
     2341 cgagacgaaa atcaaagacg ctatagccct gttcacagct tcgacagagg aatcactgaa
     2401 aaaacaccgg gaaggggtga aagaggcgat gatgcagcac aggaaggacg tgttaaagct
     2461 ggcagggaat acgggcatga tgttgctggg gatggttatt ttcctgttta ccgtgagtgg
     2521 cgggacgctc tggtatcttg gcgggatgat acaggcgaac ctggaagaaa tcaggaagca
     2581 gaacgagagt ctggagaagc tgaacgcgaa gacatggggc gtgcgttatc acgaggggag
     2641 caacggacgt tttctggtgt tgcccgaggg gatgaaagcc gaaacgaact ggacgatgga
     2701 aaacgggaaa cagaatgccg taaggctggt acaggagtaa cagagcatga cggagctgga
     2761 aagacatttg ctgaacgcat tagagcaact gcaacaggac tatatgcagc ggctgaacga
     2821 atgggagagc gccttcgtgg aattgcagaa aatgttttcg cttacgcaac gggacaacgc
     2881 gatgctgaac gagcaggtca tgcagttgag tcagcaggtg cagcacttga gcgagcggac
     2941 agaacgcttg agccagttat acagcgagaa caggagataa gggacgaacg gctgatacag
     3001 gaatgcgaac atgagttatc cctggagcgt gagcgccagc cggaaataca ggaacgcaca
     3061 ctggatggtc cttcactggg atggtaatca gagacaggct aaaatgttgt cagcgcgttt
     3121 ccggtgcatt ttttgggata atggttggtt cgggggggca ccgggaacgc gcttcagtca
     3181 gaccttgctg aaaacacagg aacgcgttaa aacgcatacg ggcgcgattc tggtgtgtct
     3241 tttgttgctg tgttttgcct ctattgccag atcgcgctca ttcccctgaa cttctgtttt
     3301 cccgctcagg tccccgtctt cttcgcttcc gaaagcatga aaaaaatccg tttcagctgt
     3361 ctctggctgg caattcctgc gtgattcaca tggctgcata gctatgcatg tggttaaaat
     3421 ttaccgggtg cgatcgcggc agtttttcgg gtggtttgtt gccattttta cctgtctgct
     3481 gccgtgatcg cgccgaacgc gtttcagcgg tgcgtacaat taagatatta cgttaaattg
     3541 tgagggaatg gtccccatat actgacttta tcatagggat agggttggta gtgggtcgat
     3601 tgggtttcgg cattgtttcc gttaatgcca attgcatttt tgtatttgat gcaacagaag
     3661 gcgtgagatt ctcctgggcc tggaaaggct aagtgtttag aattgatggc aaaatatctt
     3721 ccgtccgatt tttgaagtag ttgttgtttg gctgtctccc aaagggtgct gttacaaact
     3781 tcttgaattt gtagtttttg cagggctctt attactgcgt tgtcatgttc caattcttta
     3841 ggggagtgta ttattctctc ttttaataag ctgtttacca cagggtttag ttgttgtcta
     3901 aagcacgcag ataatgccat tgctacacaa ttttgttccc gaggaagcat gtttggcggg
     3961 gtatgccgtg tttgatgtga tatgtctatt ctcatagaag gtctctggct tatagcatca
     4021 acaaatacgg ctataaaaca aaattttcat agagtgattc aagatcttct tgagatcctt
     4081 ttttgcggcg cgtaatctgc tgcctgcaaa c
//
LOCUS       DAJVSY010000236         4081 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.238, whole genome shotgun sequence.
ACCESSION   DAJVSY010000236 DAJVSY010000000
VERSION     DAJVSY010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4081
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.238"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            33..932
                     /gene="pgrR"
                     /locus_tag="OQQ19_003990"
     CDS             33..932
                     /gene="pgrR"
                     /locus_tag="OQQ19_003990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator PgrR"
                     /protein_id="HCS1805424.1"
                     /translation="MKREEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEE
                     RLGLRLLTRTTRSVVPTEAGEHLLSVLGPMLHDIDSALASLSELQNRPSGTIRITTVE
                     HAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRI
                     GPDIPMAIVGSPDYFSRRSVPTSVSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVR
                     MEGQLLLNTIDLIIDAAIDGHGLAYLPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYY
                     PHRRHAGSAFSLFIDRLKYKGAV"
     gene            1269..2882
                     /gene="mppA"
                     /locus_tag="OQQ19_003991"
     CDS             1269..2882
                     /gene="mppA"
                     /locus_tag="OQQ19_003991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415845.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide ABC transporter
                     substrate-binding protein MppA"
                     /protein_id="HCS1805425.1"
                     /translation="MKHSVSVTCCALLVSSISLSYAAEVPSGTVLAEKQELVRHIKDE
                     PASLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIVPGVATQWKSNDNRIWTFTLRDNA
                     KWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAGINNAQAIIDGKATPDQLGVTA
                     VDAHTLKIQLDKPLPWFVNLTANFAFFPVQKANVESGKEWTKPGNLIGNGAYVLKERV
                     VNEKLVVVPNTHYWDNAKTVLQKVTFLPINQESAATKRYLAGDIDITESFPKNMYQKL
                     LKDIPGQVYTPPQLGTYYYAFNTQKGPTADQRVRLALSMTIDRRLMTEKVLGTGEKPA
                     WHFTPDVTAGFTPEPSPFEQMSQEELNAQAKTLLSAAGYGPQKPLKLTLLYNTSENHQ
                     KIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNTGNFDVIRASWVGDYNEPSTFLTLL
                     TSTHSGNISRFNNPAYDKVLAQASTENTVKARNADYNAAEKILMEQAPIAPIYQYTNG
                     RLIKPWLKGYPINNPEDVAYSRIMYIVKH"
     gene            complement(2933..3964)
                     /gene="ynaI"
                     /locus_tag="OQQ19_003992"
     CDS             complement(2933..3964)
                     /gene="ynaI"
                     /locus_tag="OQQ19_003992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low conductance mechanosensitive channel YnaI"
                     /protein_id="HCS1805426.1"
                     /translation="MIAELFTNNALNLVIIFGSCAALILMSFWFRRGNRKRKGFLFHA
                     VQFLIYTIIISAVGSIINYVIENYKLKFITPGVIDFICTSLIAVILTIKLFLLINQFE
                     KQQIKKGRDITSARIMSRIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAG
                     KDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIEGTVAEIGWRITKITTFDNRPLYVPN
                     SLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAIDQRQTLLV
                     YFNQFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFAFPSQTLYMD
                     NITPPEQGR"
BASE COUNT         1145 a          896 c          961 g         1079 t
ORIGIN      
        1 taaatgatta atagattgca tggagatact gaatgaagcg tgaagaaatc gctgatctga
       61 tggcgtttgt cgtcgttgca gaggagcgta gcttcactcg tgcagcagcc cgcctgagca
      121 tggcgcagtc agctttaagc cagatagtgc gtcgtataga agaacgattg ggattgcggc
      181 ttctgacgcg aaccacgcgc agcgttgttc caactgaagc gggcgagcat cttttgtctg
      241 ttcttggccc tatgttgcat gacatagatt cagccctggc atccctgagc gagctgcaga
      301 accgcccatc cgggacaata cgtattacta ctgtagaaca tgcagcaaaa acgatattgt
      361 taccagcaat gcgcacattc ctgaaatcgc atcctgaaat tgatattcag ctcaccattg
      421 attatggttt gaccgatgtc gtttctgaac gttttgatgc aggcgtccgt ctgggtgggg
      481 agatggataa agatatgatc gccattcgaa tcgggccaga tataccaatg gctattgttg
      541 gctcaccgga ttatttttct cgccgaagtg ttccaacgtc agtgtcacaa ttaatagatc
      601 atcaggcaat taatttgtat cttcccacat cgggtacagc aaatcgctgg agattaatac
      661 gcggtggacg tgaagttcgt gttcgcatgg aaggtcagct tttactgaat acgatagacc
      721 tgatcattga tgctgcaatt gatgggcatg gattggcgta tctaccttat gatcaggttg
      781 agcgggctat taaagaaaaa aaactgatac gtgttttgga taaattcaca ccagatttac
      841 ccggttatca cctgtactat ccacaccgtc gacatgctgg ctcggcattc tcattattta
      901 tagataggct gaagtataaa ggtgctgttt agcactactt gctgatacat taatttaatt
      961 tctctcttaa cgtattctca gttcctttca acgttttggt tattttttat tcttcgtaca
     1021 atggcgacag atgctgattt tgataccgaa aactggtttg aacgtgcgaa gcctgaacgt
     1081 agtattcggt gttctatgtg ctttgccgca ttttggcgtc gattatttac actaaatctg
     1141 atttaatata ttgatacata aaacatttta tgcttcctgt gtcacttttt tgatggaagt
     1201 tgtttgcatt tctttaaggc gaaacaaata attacgcatc aattttaatg tcggttagag
     1261 ggaaacttat gaagcactct gtttcagtca cgtgttgtgc gctgttggtc agcagcattt
     1321 ctctttcgta tgctgcagaa gttccgagcg gcacagtact ggcagagaag caggagctgg
     1381 tgcgccacat taaagatgag cctgcgtcgc tggatcccgc taaagccgtg ggcctgccag
     1441 agattcaggt cattcgcgat ctgtttgaag gactggtgaa tcagaacgag aaaggggaga
     1501 ttgtccccgg cgttgcgact cagtggaaaa gtaatgacaa ccgtatctgg acttttaccc
     1561 tgcgcgataa cgcaaaatgg gcggatggca caccggtaac ggcgcaagat tttgtctaca
     1621 gctggcagcg tctggtggac ccgaaaacgc tatcgccatt tgcatggttt gccgcgctgg
     1681 cgggaatcaa caacgcacag gcgattattg atggtaaagc tacgcctgac cagcttggcg
     1741 tcaccgcagt tgatgcccat accttgaaaa ttcagcttga taaaccgttg ccgtggtttg
     1801 tgaatttaac cgctaacttt gccttcttcc cggtgcaaaa agccaacgta gaaagcggta
     1861 aagagtggac gaaacccgga aatctgatcg gcaatggcgc ttatgttctt aaagaacgcg
     1921 tagtcaatga aaaactggtc gtggtaccga atacccatta ttgggataac gccaaaacgg
     1981 tactgcaaaa agtgaccttc ctgccaatta atcaggaatc cgcagccact aagcgttacc
     2041 tcgcggggga tattgatatc accgaatcct tcccgaaaaa tatgtatcag aagctgttga
     2101 aggatattcc ggggcaggtt tatacgccgc cgcagctcgg gacctattat tatgcgttta
     2161 acacgcaaaa agggccgacg gcagatcagc gcgttcgcct ggcattaagt atgacgatag
     2221 atcgccgcct gatgaccgaa aaagtgttgg gaacgggcga aaagccagcg tggcatttta
     2281 caccagatgt taccgccgga tttacgccgg aaccttcgcc gtttgaacaa atgagtcagg
     2341 aagaactgaa tgcgcaggca aaaactttgt tgagcgcagc tggttatggt ccgcaaaaac
     2401 cgctgaagct gacgcttttg tataacactt cagaaaacca tcaaaaaatt gcgattgctg
     2461 tagcatcgat gtggaaaaag aaccttggcg tagatgttaa attgcaaaat caggaatgga
     2521 aaacctatat cgatagccgt aacaccggca attttgatgt tatccgcgcc tcatgggtgg
     2581 gggattataa tgaaccctcc actttcctga cattattaac gtcaacgcat tcaggaaata
     2641 tttcacgctt taacaatccg gcatacgaca aagttctggc ccaggcatcg acggaaaata
     2701 ccgttaaagc gcgtaatgcc gattacaacg cggcagaaaa aatcctcatg gagcaagcac
     2761 cgattgcacc aatttatcaa tataccaatg gacgattaat caagccgtgg ctgaaaggtt
     2821 atcccattaa taacccggaa gatgtggcgt acagccggat tatgtatatt gtgaagcatt
     2881 gatgtgatgg gaactggcgt tacccttgtg gataacgcca gtgatgtctg atttagcgcc
     2941 cctgttccgg cggtgtaatg ttatccatat acagcgtctg gctggggaag gcaaagtccg
     3001 cgccgtgtga ctgcacaata tcgataatct tcaaataaac gtcttgttgt gcagcaagcc
     3061 attcagccca taccgtggtt ttggtaaagc aataaaccat aatattcaat gacgagtcgg
     3121 caaactggtt gaaataaacc agtaaggttt gtcgctggtc gatggccggg tgatttttca
     3181 gcatctcacg tacggcttcg acaataacgc ccacttttgc cgcatcctca taacgtaaac
     3241 caatggtcgt ggtaatgcgg cggttggtca ttcgtcctgg gttttctacg ctgatcgacg
     3301 aaaacagcga gttcggtacg tacaatggac gattatcaaa ggtcgtaatt ttggtaattc
     3361 gccagccaat ttccgctact gtaccttcga tatttctgtc cggtgaacgg atccagtcgc
     3421 caatactgaa aggacggtcg aaatagagca tgatcccgga aaagaaatta ctcagaatat
     3481 ctttaccggc cataccgaca gccagaccac caataccacc aaaggtcagc aagccagaaa
     3541 ggctcatgcc gaaatgttcg ccataaagca gaacaagcac cacaataatg gtgattttga
     3601 taatgcgcga cataatccgc gcactggtga tatcgcgacc ttttttaatc tgctgttttt
     3661 caaactgatt aatcagcaaa aatagcttaa tcgtcagaat aaccgcaatc agggacgtac
     3721 agataaaatc gataacgcct ggggtgataa atttgagttt atagttttct ataacataat
     3781 taataatgct accaacagca ctgataatta tggtgtagat taaaaattgc accgcatgga
     3841 ataaaaaacc ttttctttta cgatttccgc ggcgaaacca aaagctcatc agaatcaatg
     3901 ctgcgcagct accgaaaata atgaccagat taagcgcatt atttgtaaac agttcagcga
     3961 tcattgtttt atcaggctcc tccagataat tgtcgtcatg ccggaacccc ctggcggggc
     4021 tattttaccg cgacaattca ttcagatcat caatagtcag ggaaggaagt agcaacatta
     4081 g
//
LOCUS       DAJVSY010000237         4069 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.239, whole genome shotgun sequence.
ACCESSION   DAJVSY010000237 DAJVSY010000000
VERSION     DAJVSY010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4069)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4069)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4069
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.239"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..1046)
                     /locus_tag="OQQ19_003993"
     CDS             complement(<1..1046)
                     /locus_tag="OQQ19_003993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708400.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein"
                     /protein_id="HCS1805427.1"
                     /translation="MREINMLRNISSCLFPHISKITSPNHYLSEWDDWEKQGLPEEQR
                     TEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKEL
                     IARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLK
                     KLEVRNNELQTLPSLPSNLKILKVAHNHLTELPPLPRRLQLLFAYSNRLSNLPNIQEN
                     IIMRRFFYFENNQITTIPTNLFRLDPHITIEIANNPLSDQTLLFLIQQTSVPNFNGPQ
                     FRISLSDQNRLFLRQMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVS
                     TQWTSFSTEENSRA"
     gene            1537..1647
                     /locus_tag="OQQ19_003994"
     CDS             1537..1647
                     /locus_tag="OQQ19_003994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA invertase"
                     /protein_id="HCS1805428.1"
                     /translation="MLIGYVRVSTNDQNTDLRRNALNCAGYELIVERMGA"
     gene            1927..2922
                     /gene="pgl"
                     /locus_tag="OQQ19_003995"
     CDS             1927..2922
                     /gene="pgl"
                     /locus_tag="OQQ19_003995"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HCS1805429.1"
                     /translation="MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS
                     PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYN
                     AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG
                     HLVAQDPAEVTTIEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL
                     DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ
                     PRGFNVDHSGKYLIAAGQKSHLISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH"
     gene            complement(2963..3915)
                     /locus_tag="OQQ19_003996"
                     /pseudo
     CDS             complement(2963..3915)
                     /locus_tag="OQQ19_003996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308823.3"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
BASE COUNT         1089 a          830 c          953 g         1197 t
ORIGIN      
        1 aatgcccggg aattctcctc ggtggaaaaa gaagtccatt gtgtagaaac ctcccgacga
       61 tctgcttcag gaaaccaggc tgccacagtt tcgggaagag gggggatctg aaagttctgc
      121 cccccttcag tgatgactct gatatggcgc gaatgtaaat tttgcggcaa catctggcgt
      181 aaaaacagtc tgttttggtc tgacagggaa atacgaaact gaggcccgtt aaaatttgga
      241 accgaagttt gctgtattaa gaatagcaga gtttgatctg ataaggggtt atttgcaatc
      301 tcaatagtta tatgaggatc taaacgaaaa agatttgtcg ggattgtagt tatttggttg
      361 ttttcaaaat aaaaaaatct tctcatgata atattttctt ggatgtttgg taagttgctt
      421 aatctattgc tatatgcaaa aagaagttgc agtctcctag gtaaaggggg cagttcagta
      481 agatggttgt gcgcaacctt aagtatctta agattagaag gcagagatgg aagagtttgc
      541 agttcgttgt tcctaacctc aagttttttt aaattcaagg gtaatgaagg cagtgtggat
      601 aacctattat actctgcgct tagtgatttg atggtgtctg gtaataacgg cagattctct
      661 aattgatttt cggacacatc caaagttatt agataatgtg gtaatgcaga tatatgtgtt
      721 aagaaattat ctcttgcaat aagttcttta atattttcag gtaaatcagt aaggatggtt
      781 aatttattac agctcacatc aagcttttta atgcaagcag ggagtacagg taacgaggaa
      841 agcgccaagg ctcgcaggtc cagtttatgc cccttagagg taagacatgc acgaagtctt
      901 cttaccgcct cagtacgctg ttcttccggt aacccctgtt tctcccaatc atcccattcg
      961 gacaaataat ggttggggga tgtaattttg ctgatatgtg gaaataaaca ggatgaaata
     1021 tttctgagca tattaatttc tcgcatatgg atatggaatt agattgtgaa taaattgtat
     1081 ttaatgtatc tctcctaatg aggagggtgt ttcagaatat tcgccataag ggaatgagtg
     1141 ttatatcatg ctttctatcc tggtaagtat gtttgctttt ttcgtatatt tggttcatct
     1201 ttttttgatg ttttacatat tcacaatgca gaggatttat accagaagac attagtcttg
     1261 agtaagatac tacaacatct ccaactattt tagccagcct gactacttga cttggtaata
     1321 tttgttgcta ataatcatgt ataaaataag cttatataca tagtaacttc agcaaaggat
     1381 ttagtaatga tccaaatcat atatcaatgt actgtttttt tctttaaaaa aacagtacat
     1441 tctattttat aatgactgtg tattcccatg gaaggagatc acccaattct cccccccgac
     1501 ttttgacgca gtgtcttgtt aacaggggga tttaccatgc ttattggcta tgtacgcgta
     1561 tcaacaaatg accagaacac cgatctacga cgtaatgcgt tgaactgtgc aggatatgag
     1621 ctgattgttg agcgaatggg agcttgattg gaagttgtta gggtatggtg tttacggtcg
     1681 ttgatatggc gaacaaacgc ggggagcgtc acgctcccta aatggtcgcg aaaatatctg
     1741 tggcattgtc aaatttgtga cggtgactaa tattttaatg atatgccatt cgaaatggtg
     1801 tgctaacgta ttgatttaat tgtgacgcga tgttgtattt tatcgcgttt tgttgtctgt
     1861 ttttcattcg cttgatgttg ctatttacat gaaaaataaa gaatttattg tttttgaggt
     1921 gtgtttatga agcaaacagt ttatatcgcc agccctgaga gccagcaaat tcacgtctgg
     1981 aacctgaatc atgaaggcgc actgacgctg acacaggttg tcgatgtgcc ggggcaggtg
     2041 cagccgatgg tggtcagccc ggacaaacgt tatctctatg ttggtgttcg ccctgagttt
     2101 cgcgtcctgg cgtatcgtat tgccccggac gatggcgcac tgacctttgc cgcagagtct
     2161 gcgctgccgg gtagtccgac gcatatttcc accgatcacc aggggcagtt tgtctttgta
     2221 ggttcttaca atgcgggtaa cgtgagcgta acgcgtctgg aagatggcct gccagtgggc
     2281 gtcgtcgatg tggtcgaggg gctggacggt tgccattccg ccaatatctc accggacaac
     2341 cgtacgctgt gggttccggc attaaagcag gatcgcattt gcctgtttac ggtcagcgat
     2401 gatggtcatc tggtggcgca ggaccctgcg gaagtgacta ccattgaagg ggccggcccg
     2461 cgtcatatgg tattccatcc aaacgaacaa tatgcgtatt gcgtcaatga gttaaacagc
     2521 tcagtggatg tctgggaact gaaagatccg cacggtaata tcgaatgtgt ccagacgctg
     2581 gatatgatgc cggaaaactt ctccgacacc cgttgggcgg ctgatattca tatcaccccg
     2641 gatggtcgcc atttatacgc ctgcgaccgt accgccagcc tgattaccgt tttcagcgtt
     2701 tcggaagatg gcagtgtgtt gagtaaagaa ggcttccagc caacggaaac ccagccgcgc
     2761 ggcttcaatg ttgatcacag cggcaagtat ctgattgccg ccgggcaaaa atctcacctc
     2821 atctcggtat acgaaattgt tggcgagcag ggactactgc atgaaaaagg ccgttatgcg
     2881 gtcgggcagg gaccaatgtg ggtggtggtt aacgcacact aaccgctgat ttaaccggcg
     2941 cagtctctcc tgcgccggtg tattaaccta tctcctgtaa cgcatgtctc tggcgttcga
     3001 cgatattggt ccacaaattg tctttatcgt cagtccacaa attaatcagc aaggcaaaaa
     3061 agcgttcagc tgccggagaa agcacggcat ctttgcggcg aataatcccc aatgtccgac
     3121 gtataacggg ttccaccagt gggataccaa taatcgaaga atagggcgca tggggcattg
     3181 ccagaccagg aagcgccgaa atccccagtc ctgcctccac tagtcctaat gacgtcgaaa
     3241 gatgacgcac ttcgtaaaac cagtccagct tccagggctt gtcggccagc tgttgttcta
     3301 tcaacagtcg gttgccgctg gaggagcgta cgccaatcat tttgtaaccc actaactcct
     3361 gccattctac aagctgcttt ttggccaatg gatggtcacg ccgacaggca gcacgaacgg
     3421 ctcgttgacc agtggggtaa aatcaatgga tgaatttgtg acgttgttca tgtttatgcc
     3481 aaagtctgat tcgttacaca gcaccgattc catgcaatta ttcgtgcctt gttccagaat
     3541 ccgcacttta atattgggat acagctcatt aaatttaccg attgccagcg gtaaaaaata
     3601 aaatactgcg gtcggaatac acgctaacgt caccatacca cgatgataag cattcatatc
     3661 acgaatatta aaaagcgttt catcgaattt ctttattaat tcccgcgcct ccgggagcaa
     3721 cctttttcct gcttttgtta acgtaacctt gcgagttgta cgctcaaata gttgaatatg
     3781 taaatcttcc tccatctttt ttattcttcg cgttaatgca ggttgcgtaa tattgagtaa
     3841 tttagcggca ttgttaaacg aactggactc tgccagtatg acaaatgcct tcatacttga
     3901 taattcatgc ttcattatta ctccggaaaa tggaagcgac gattttgggt ggctggccgt
     3961 taaaaatttt aactgcattt agccaactta aattaatgaa aaaatgttat taatcgttga
     4021 gctaaagtca ttagagatgc tttgccctta atgtaaccat atcgcaata
//
LOCUS       DAJVSY010000238         3911 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.240, whole genome shotgun sequence.
ACCESSION   DAJVSY010000238 DAJVSY010000000
VERSION     DAJVSY010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3911)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3911)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3911
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.240"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(313..732)
                     /locus_tag="OQQ19_003997"
     CDS             complement(313..732)
                     /locus_tag="OQQ19_003997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309968.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1805430.1"
                     /translation="MVHEDKARKEFASRLALACENAGYEQHGRQAEIARRMKLTPKAV
                     SKWFNGETIPRREKLRELATLIGTTPTYLLGEDTEESGQVRFYQELNPRQKIIIDLLD
                     ELPDSETDELLKTLEEKKQKYNAIYEELARKKKQKAS"
     gene            812..1066
                     /locus_tag="OQQ19_003998"
     CDS             812..1066
                     /locus_tag="OQQ19_003998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS1805431.1"
                     /translation="MNQKTLEDVIKTVRVAVVADVCGVSQRAIYKWMDNGKLPRTEYT
                     GETNYAEKIALASNGLFSADAILTIGRNKTTTKKLMGVDS"
     gene            1063..1488
                     /locus_tag="OQQ19_003999"
     CDS             1063..1488
                     /locus_tag="OQQ19_003999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HCS1805432.1"
                     /translation="MKIKHEHIRMAMNAWAHPDGEKVPAAKITKAYFELGMTFPELYD
                     DSHPEALARNTQKIFRWVEKDTPDALKKIQALLPAIEKAMPPLLVARMRSHSSAYFRE
                     LVETRERLVRDADDFVAVAIAGFNQMNRGGPAGNIVAVH"
     gene            1560..2630
                     /locus_tag="OQQ19_004000"
     CDS             1560..2630
                     /locus_tag="OQQ19_004000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001736248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage replisome organizer"
                     /protein_id="HCS1805433.1"
                     /translation="MANAWLRLWHDMPNDPKWRTIARVSGQPIATVMAVYIHLLVSAS
                     RNVTRGHIDVTTEDLASALDVTEEVIDSILQTMQGRVLDGDLITGWEKRQVLKEDNGN
                     ISQTAKSPAERKRAQRERERKREQNGDCHGASRYVTHMSRRVTTDKDTDKDTDQEDQN
                     TMVHGVKNATNQAGDVQTVNPGQPAGTTPEADSAYALKADSGAVQQAMTASPEQSHQL
                     QQPEADSAIQREADRVVPENTGQSVGRVDYPDVFEQVWREYPLRAGANPKKSAFSAWK
                     ARLREGVPPEAMLDGVRRYARYLAATGKTGTEFVQRATTFFGPDRNFENPWLLPVSGT
                     NNQRCVNHISEPDNEIPPGFRG"
     gene            2671..3093
                     /locus_tag="OQQ19_004001"
     CDS             2671..3093
                     /locus_tag="OQQ19_004001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001151247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF977 family protein"
                     /protein_id="HCS1805434.1"
                     /translation="MAKVFTQEEREKIKGQVLELVRQSGRETLRQLEAKTGATRYLMS
                     VLARELVASGDVYNSGYGLFPSEQARKDWQNARKKLSRAKLKKPSAVDPDLIWSLPDG
                     EIRRYDSRLNIICRECRKSEVMQRILSFYQGNFQEVMA"
     gene            3090..3395
                     /locus_tag="OQQ19_004002"
     CDS             3090..3395
                     /locus_tag="OQQ19_004002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001266129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4406 domain-containing protein"
                     /protein_id="HCS1805435.1"
                     /translation="MRVRVYIAGPMTGYKNFNREAFHNAEEELKREGHTVLNPAVLPD
                     GLTQPQYMDICMAMIRCVDAIYMLKGWQRSAGAKAELALAEKLGHAVIFQETASVQD"
     gene            3382..3837
                     /locus_tag="OQQ19_004003"
     CDS             3382..3837
                     /locus_tag="OQQ19_004003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000335116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ead/Ea22-like family protein"
                     /protein_id="HCS1805436.1"
                     /translation="MCKTNYQALRERYSPIQVPECPVCGDEMSIQRIFSRTHIVYACT
                     GEGDDGYFKTGRTFADEHYLKSRVTVVDVSAPDVLALLKELEVKDKRIAELTDALTQM
                     INAHKTTIRFGHERITECGGDCDSPEKMISENPDIRMAEAVLRAGIKTE"
BASE COUNT         1070 a          842 c         1050 g          949 t
ORIGIN      
        1 atcgatagta tccatgctga cctcatttcc ccttaacgcc ggggtagcgg aacaaaaacc
       61 tgctgcatag ttattaaagt tgaaccctgc cgtcatgttc ttacgcctcg ggctggctac
      121 ttaacccctg accactgcct ggtaactcga agtattgccc tgcattctgt ggggcggggt
      181 gggtggcagg tatataatgt actttgcgtt cattgttgta aagtgcttat ggtacatttt
      241 gtgtgtaaaa aaatgagatg ggataaagtg aagcacaaac ccggaggaag gcgctaccgg
      301 atttatgctg gtttaagagg ctttttgttt tttctttcgt gctaactctt cgtaaattgc
      361 attgtacttc tgttttttct cttcaagagt ttttaaaagt tcatctgtct cactgtcagg
      421 gagctcgtcc agaaggtcaa tgatgatttt ttgtcttgga tttaactcct gatagaaacg
      481 tacctgtcca ctttcttctg tatcctctcc caaaagatag gttggtgttg ttcctattag
      541 tgttgctaat tcccttaatt tctcccggcg aggaattgtt tcgccattaa accatttgct
      601 aaccgctttt ggtgttaatt tcattcgacg ggcaatttct gcctgccttc catgttgttc
      661 ataaccagcg ttttcacagg ctagcgcaag cctactggcg aactctttac gcgctttatc
      721 ttcatgaacc ataagttcaa tgatattcgc tcttgaatgt actgtcagtt ctgttatggc
      781 atgtactcaa agttcacatt gtgagggtga tatgaaccag aaaacacttg aagatgtaat
      841 caaaactgtt cgcgttgctg ttgtggccga cgtttgtggt gtcagccaaa gagcaatcta
      901 taaatggatg gataacggaa aattgcctcg cacagaatat accggcgaaa caaattacgc
      961 tgaaaaaatc gctcttgcat caaacggatt attttctgcc gatgcaattt taactattgg
     1021 caggaataaa actactacga aaaagctgat gggagttgat tcatgaaaat caagcatgaa
     1081 cacatccgca tggcgatgaa tgcctgggcg catccggacg gcgaaaaagt accggctgcg
     1141 aaaattacca aagcgtattt cgagctggga atgacgttcc cggaactgta tgacgacagc
     1201 catccggaag ccctggctcg caatactcag aaaattttcc gctgggtgga gaaagacacc
     1261 cctgatgcgc ttaaaaaaat tcaggcgttg ttaccagcta tcgaaaaagc aatgccacct
     1321 ctgctggtgg cccgaatgcg cagccatagc tcagcctatt ttcgggaact agtggagacg
     1381 cgggaacgac tggtgagaga cgctgatgat tttgtcgcag tggcgatcgc tggtttcaac
     1441 cagatgaatc gtggtggccc tgcaggaaat attgtggctg tgcattgact cgcaatattc
     1501 ataccggatc acttccggca atttgtgagt aaaaagattc ggtatcaaaa gaggtgagta
     1561 tggctaacgc ctggctcaga ttatggcatg acatgccaaa tgaccctaag tggcgaacaa
     1621 ttgccagggt gtcagggcag ccaattgcaa cagtgatggc agtgtatatc cacctcctgg
     1681 tgagcgcgtc acgaaatgtc acgcgaggtc acattgatgt cacgacagaa gatttggcaa
     1741 gtgcgctcga cgtgacagaa gaggtaattg attcaatttt gcagacgatg caggggcggg
     1801 tacttgatgg tgatttaatc actggatggg aaaaacgcca ggtgctgaaa gaggacaacg
     1861 gcaatatttc gcaaaccgca aaatctcctg cagagcgcaa gagggcgcag cgagagaggg
     1921 aaagaaagcg ggaacaaaat ggcgattgtc acggcgcgtc acgatatgtc acgcacatgt
     1981 cacgacgagt cacgacagat aaagatacag ataaagatac agatcaagaa gatcaaaaca
     2041 ctatggtcca tggcgtaaaa aacgccacga accaggcagg ggatgttcag accgtcaatc
     2101 ctggtcagcc agcaggcacg acaccggaag ccgattcagc gtatgcgctg aaagccgatt
     2161 cgggcgctgt gcagcaggcg atgaccgcaa gtccggagca atcacaccaa ctgcagcagc
     2221 ctgaagccga ttccgccatt cagcgggaag ccgatcgggt agtcccggaa aacaccgggc
     2281 agtctgtggg acgagtggat tatccggatg tgttcgaaca ggtctggcgg gagtacccgt
     2341 tgcgtgccgg ggcaaacccg aagaaatccg ctttcagtgc ctggaaggcc agattacgcg
     2401 agggggtgcc accagaggcc atgctggatg gcgtgaggcg ttacgcaaga tacctggcgg
     2461 ctaccgggaa aacgggaacg gaatttgttc agcgagcgac gacgtttttt ggaccggacc
     2521 ggaattttga gaacccctgg ttgctcccgg taagcggcac gaacaaccag cgttgtgtga
     2581 atcatatttc tgaaccggat aacgaaattc cgccgggctt cagggggtaa gtgttaattt
     2641 ctggtcatga ggtaattttc aggagggctt gtggcaaaag tttttacaca agaagagcgg
     2701 gaaaaaatta aagggcaggt tcttgaactc gtacgccaga gtgggcgcga gacgttacga
     2761 caactggaag ctaaaactgg ggcaacaaga tatctgatga gcgttctggc cagagagctg
     2821 gttgccagtg gcgatgtata caactctggt tacgggttat tcccgtctga acaggcgcgt
     2881 aaggactggc aaaatgcccg taaaaagctc tcaagggcaa agctgaagaa accatctgcg
     2941 gttgatccgg accttatctg gtcattacct gacggagaaa tacgtcgcta cgacagtcgc
     3001 ctaaacataa tctgtcgcga gtgccggaag agcgaagtta tgcagcgcat attgtcgttt
     3061 tatcagggta attttcagga ggtgatggcg tgagggtgag agtctatatc gccggtccaa
     3121 tgaccgggta taaaaatttc aaccgtgagg cgtttcacaa tgcggaagag gaactgaaac
     3181 gggaagggca taccgtctta aacccggcag tacttccgga cgggctgaca cagccgcagt
     3241 acatggatat ctgcatggcg atgattcgtt gtgtggatgc gatttacatg ctgaaaggct
     3301 ggcagcggtc agcaggcgct aaggcagaac tggcgctggc ggagaaactg gggcatgcgg
     3361 tgatttttca ggagacagcc agtgtgcaag actaattacc aggcattacg tgaacgttat
     3421 tcaccaattc aggtgccgga atgtcctgtt tgtggcgatg aaatgtcgat acagcgcata
     3481 ttttccagaa cgcatattgt gtatgcctgc acaggtgagg gggatgatgg atattttaaa
     3541 actggtcgaa cttttgcgga tgagcattac ctgaaatcgc gcgtaaccgt cgttgatgtt
     3601 agcgctcctg acgtactggc tttactgaaa gagctggaag ttaaagacaa acgcattgca
     3661 gaattgacag atgcgcttac acaaatgatt aatgcgcaca aaaccacaat tcgttttggt
     3721 catgaacgca taactgaatg tggtggtgat tgcgactcgc cggaaaagat gatttcagaa
     3781 aatccggata tcagaatggc agaggctgtt ttgagagcag gaataaaaac tgaataatta
     3841 aatttagcac agcaaataaa atttaatcct taaccggagg gatttctgca ccctcagaac
     3901 atcaggaggc c
//
LOCUS       DAJVSY010000239         3853 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.241, whole genome shotgun sequence.
ACCESSION   DAJVSY010000239 DAJVSY010000000
VERSION     DAJVSY010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3853)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3853)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3853
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.241"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..439
                     /locus_tag="OQQ19_004004"
     CDS             <1..439
                     /locus_tag="OQQ19_004004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HCS1805437.1"
                     /translation="FTTIMKENGLKANSLCVEITETVIERINEHFYLNIEQLRKQGVR
                     ISIDDFGTGLSNLKRFYEINPDSIKVDSQFTGDIFGTAGKIVRIIFDLARYNRIPVIA
                     EGVESEDVARELIKLGCVQAQGYLYQKPMPFSAWDKSGKLVKE"
     gene            447..1775
                     /locus_tag="OQQ19_004005"
     CDS             447..1775
                     /locus_tag="OQQ19_004005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HCS1805438.1"
                     /translation="MSRINKFVLTVSLLIFIMISAVACGIYTQMVKERVYSLKQSVID
                     TAFAVANIAEYRRSVAIDLINTLNPTEEQLLVGLRTAYADSVSPSYLYDVGPYLISSD
                     ECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLGLE
                     RFSLLSKSLAMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVF
                     AYKKDVYLRVCTLIIFFAALVAVISGASCLYLVRRVINRGIVEKEAIINNHFERVLDG
                     GLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGSYLCLFDVDKFKNI
                     NDTFGHLLGDEVLMKVVKILKSQIPVDKGKIYRFGGDEFAVIYTGGTLEELLSILKEI
                     VHFQVGSINLSTSIGVAHSNECTTVERLKMLADERLYKSKKNGRAQISWQ"
     gene            complement(1822..3147)
                     /gene="rimO"
                     /locus_tag="OQQ19_004006"
     CDS             complement(1822..3147)
                     /gene="rimO"
                     /locus_tag="OQQ19_004006"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HCS1805439.1"
                     /translation="MSKVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDD
                     ADMVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITG
                     PHSYEQVLEHVHHYVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIP
                     SMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTS
                     MVSLCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMK
                     RPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCF
                     KYSPVEGADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDE
                     EGAIGRSMADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV"
     gene            3360..3743
                     /gene="bssR"
                     /locus_tag="OQQ19_004007"
     CDS             3360..3743
                     /gene="bssR"
                     /locus_tag="OQQ19_004007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator BssR"
                     /protein_id="HCS1805440.1"
                     /translation="MFVDRQRIDLLNRLIDARVDLAAYVQLRKAKGYMSVSESNHLRD
                     NFFKLNRELHDKSLRLNLHLDQEEWSALHHAEEALATAAVCLMSGHHDCPTVITVNAD
                     KLENCLMSLTLSIQSLQKHAMLEKA"
BASE COUNT         1006 a          857 c          950 g         1040 t
ORIGIN      
        1 ttttaccacc atcatgaaag aaaatggcct gaaggcgaac agcctctgtg ttgagatcac
       61 tgaaaccgtg atcgagcgaa ttaatgaaca tttttatctc aatattgaac aactgcgtaa
      121 acaaggggta cggatatcga ttgatgactt tggcaccggt ttgtcaaacc tgaaacgttt
      181 ttatgaaatt aatccagaca gcataaaggt ggactcgcaa tttaccggcg atattttcgg
      241 tactgcggga aaaattgtgc gcattatttt cgatctggca cgctataacc ggatcccggt
      301 gattgcggaa ggcgtagaga gcgaagacgt tgcacgcgaa ttaattaaat taggatgtgt
      361 tcaggctcag gggtatctgt accagaaacc tatgccattc tccgcctggg ataaaagtgg
      421 aaaattagta aaagagtagt ttacgtatgt ccagaatcaa taagttcgta cttacagtca
      481 gtctgctgat ttttatcatg atttcagcag ttgcctgcgg gatctacact caaatggtaa
      541 aggaacgggt gtatagcctg aaacagtccg ttattgatac tgcttttgcg gtggcaaata
      601 ttgctgaata tcggcgtagc gtggcaattg atcttatcaa cacgctaaat cccactgagg
      661 aacagctgtt ggttggtttg cgcacagctt acgccgactc ggtttccccc tcttatttgt
      721 acgatgtcgg tccttatctg atttccagtg acgaatgtat tcaggtaaag gagttcgaga
      781 aaaattattg tgcagatatt atgcaggttg tgaagtatcg acatgtcaaa aatacagggt
      841 ttatctcttt tgacggtaaa accttcgtct attacctcta tccggtaact cacaatcgta
      901 gtctgatatt tttgcttggt ctggagcgtt tttctttact gtcaaaatcg ctggcgatgg
      961 acagcgagaa cctgatgttc tctctattta agaacggtaa accggtgacc ggtgatgaat
     1021 ataatgctaa aaacgccatc ttcaccgttt cggaagcgat ggagcacttc gcctatttgc
     1081 cgaccggatt gtacgtattt gcgtataaaa aagatgttta tttgcgggtc tgtacattga
     1141 ttattttctt tgccgcattg gtggctgtga tatcgggtgc cagttgcctc tatctggtac
     1201 gcagagtgat taatcgtggt attgtggaga aagaagccat cattaataac cattttgaac
     1261 gcgtactgga tggcgggctt ttcttttcgg ctgccgatgt caaaaaactc tacagtatgt
     1321 ataactcggc gttcctggac gacctgacca aagcaatggg cagaaaatcc tttgacgaag
     1381 atttaaaagc gctgccggaa aaaggcagtt atttgtgcct gtttgacgtc gataaattca
     1441 aaaacattaa cgacaccttc ggtcatttgc tgggcgatga agtgttgatg aaagtggtga
     1501 aaatccttaa atcacagatc ccggtagata aaggtaaaat ctaccgcttc ggcggtgacg
     1561 aatttgcggt gatttatacg ggtggaacgc tggaagagtt gctatcgatt ctaaaagaaa
     1621 tcgttcattt ccaggtggga agcattaatt taagtaccag tatcggtgta gcgcattcaa
     1681 atgaatgtac caccgtcgaa cgcttgaaaa tgctggcgga tgagcggctg tataagagta
     1741 agaaaaacgg cagggctcag attagctggc agtaatcatt attcgcaggc cggacaaatg
     1801 attttgcccg gcctgaatta attaaacccg gctaccccac aaatcgtact catcggcgtg
     1861 ctcgactttc acacgcagga tatcacccgg cttaacgttg gtttcaccat tgagataaac
     1921 cgcgccgtcg atttccggtg catctgccat gctgcgacca atcgcgcctt cttcgtccac
     1981 ttcgtcgata atcaccagaa tttcacggcc cactttctct tgcaggcgct cggcggaaat
     2041 ctgctgctgc agctgcatga aacggttcca gcgttcttct ttaacttctt ccggaacctg
     2101 gtcaggcagg gcattggcgt ctgcaccttc aaccgggctg tatttaaagc agccaacgcg
     2161 atccagacgc gcttctttca ggaagtcgag tagcatctgg aaatcttctt ctgtctcgcc
     2221 agggaagccg acaataaagg ttgagcgtag ggtcagttcc gggcagattt cgcgccactg
     2281 tttgatgcgc gccagttggc gatctacaga acccggacgc ttcatcagtt tgagaatgcg
     2341 cgggctggcg tgctgcaacg gaatgtccag atacggcagg attttgcctt ctgccatcag
     2401 tgggatgacg tcgtccacat gcggataagg gtaaacgtag tgcagacgtg tccagatccc
     2461 cagtttcgat aactgttcgc acaggctgac catgctggtt tttaccggct cgccgttgtg
     2521 gaagccagta cgatgtttaa catcaacgcc ataggcggaa gtatcctgcg agatcaccag
     2581 aatctcttta acgcccgcat ctaccagacg tttcgcttca cttaacactt cgccaatcgg
     2641 acggctcacc aggtcgccgc gcatagacgg aataatgcag aaggtgcagc ggtgattaca
     2701 gccttccgaa attttcagat aggcataatg acgcggcgtc agtttcacac cttgttctgg
     2761 caccaggctc aggaatgggt tgtgtttcgg ttttggcacg tagtgatgaa cgtgctccag
     2821 aacctgctca tagctatgag gcccggtgat ttccagcact ttcgggtgga cttcgcggat
     2881 ctgatcttct tttgccccca gacaaccggt cacaattacc ttgccgtttt cattcaacgc
     2941 ttcaccaatg gcttccagtg attcttgtac cgcgctgtca ataaagccgc aggtgttgac
     3001 gatcaccatg tccgcatcgt catagctcgg taccacgtca taaccttcag tgcggagttc
     3061 ggtgagaata cgctctgaat cgacaaggtt tttcggacag ccaagggaaa caaagccgat
     3121 tttcggctgg ggagttactt tgctcatagc ttaaaaaata ttcagttaca ggaaaggtca
     3181 gggcagggat tctacagagt tctggataaa atttgtatcg caatctcatt cgctggcgga
     3241 ggcgaaggaa atgtaaattt tgttaattcg gcgtgaagaa ttgatcctgg acagcatttt
     3301 gctcaaaaaa tagccatact atttaattgc aacaaggctg gaaagaggag gatcgaagta
     3361 tgttcgttga cagacagcga atcgatctgc tgaaccggtt gatcgacgca cgcgttgacc
     3421 tcgctgcata cgtgcaactg aggaaggcaa aaggatacat gtccgtcagc gaaagcaatc
     3481 atctacgaga taactttttt aaactgaatc gcgaactgca cgataaatcg ctgcggttga
     3541 atcttcatct ggatcaggaa gagtggagtg ctcttcatca tgctgaagaa gcattagcga
     3601 cagccgcagt atgtttgatg agtgggcacc atgattgccc gactgttatt accgtcaacg
     3661 ccgataagct tgaaaattgt ctgatgagct taacgctgag tatccagagc ctgcagaagc
     3721 acgccatgct tgagaaggcc tgaaaactaa gggggagaaa gcgtctcccc cttcatgttt
     3781 aagtttttgt aaaaatgaat ttgttatctc ctccactgac tacgctttaa gccagagtca
     3841 atccggaggc gtt
//
LOCUS       DAJVSY010000240         3819 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.242, whole genome shotgun sequence.
ACCESSION   DAJVSY010000240 DAJVSY010000000
VERSION     DAJVSY010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3819
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.242"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            1..211
                     /locus_tag="OQQ19_004008"
                     /pseudo
     CDS             1..211
                     /locus_tag="OQQ19_004008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310610.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C"
     gene            193..1575
                     /gene="torZ"
                     /locus_tag="OQQ19_004009"
                     /pseudo
     CDS             193..1575
                     /gene="torZ"
                     /locus_tag="OQQ19_004009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707760.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine N-oxide reductase TorZ"
     gene            complement(1740..2711)
                     /gene="cmoB"
                     /locus_tag="OQQ19_004010"
     CDS             complement(1740..2711)
                     /gene="cmoB"
                     /locus_tag="OQQ19_004010"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HCS1805441.1"
                     /translation="MIDFGNFYSLIAKNHLSHWLETLPAQIANWQREQQHGLFKQWSN
                     AVEFLPEIKPYRLDLLHSVTAESEEPLSTGQIKRIETLMRNLMPWRKGPFSLYGVNID
                     TEWRSDWKWDRVLPHLSDLTGRTILDVGCGSGYHMWRMIGAGAHLAVGIDPTQLFLCQ
                     FEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHRRSPLEHLWQLKDQLVN
                     EGELVLETLVIDGDENTVLVPGDRYAQMRNVYFIPSALALKNWLKKCGFVDIRVVDVC
                     VTTTEEQRRTEWMVTESLSDFLDPHDPSKTVEGYPAPKRAVLIARKP"
     gene            complement(2708..3451)
                     /gene="cmoA"
                     /locus_tag="OQQ19_004011"
     CDS             complement(2708..3451)
                     /gene="cmoA"
                     /locus_tag="OQQ19_004011"
                     /EC_number="2.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HCS1805442.1"
                     /translation="MSHRDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIIS
                     MISMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHI
                     DAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGAL
                     VLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARL
                     HKAGFEHSELWFQCFNFGSLVALKAEDAA"
     gene            complement(3492..>3819)
                     /locus_tag="OQQ19_004012"
     CDS             complement(3492..>3819)
                     /locus_tag="OQQ19_004012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310606.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HCS1805443.1"
                     /translation="LRLQYRVAYGDGGFSELQSAIRIHGNAVEYIPIAIVLMLFMEMN
                     GAETWMVHICGIVLLAGRLMHYYGFHHRLFRWRRSGMSATWCALLLMVLANLWYMPWE
                     LVFSLR"
BASE COUNT         1010 a          952 c         1010 g          847 t
ORIGIN      
        1 aggcgagctg gctaccgtga atcctggtac cgatctcacc gtcgttgatg ccagtggcaa
       61 acagccgatc gttctgttgc agggttatca aatgcagggc agtgaaaaca cgctctacct
      121 ggcggcaggt caacggctgg cgctagccac attaagtgaa gaaggtatca aggcgctcac
      181 gctaaacggg gaatggcagg ctggggaatt cagcgccagc aatatggtga acagaaacac
      241 tggatgctgg tgacgctggc ggcggtgtta gggcagattg gtacaccggg cggcggtttt
      301 ggtttctctt atcattactc caatggtggc aacccgacac gtgttggcgg cgtgctgccg
      361 gaaatgtctg cggcgattgc cggacaggcc agcgaggccg ctgatgatgg cggaatgagg
      421 gcgattcctg ttgcccgtat cgtcgatgcg ctggaaaatc ctggcggcaa atatcagcat
      481 aacggtaaag agcaaacgta tccgaatatc aaaatgatct ggtgggcggg tggcggtaac
      541 tttacccatc accaggatac taatcgtctg attaaagcat ggcagaaacc ggagatgatc
      601 gtcgtttctg aatgctactg gaccgcagct gctaaacatg cagatatcgt attaccgatc
      661 accacatcgt ttgagcgcaa tgacttgacg atgaccggtg attacagcaa ccagcatatt
      721 gtgccgatga agcaggctgt cgctccgcaa tttgaagcgc gaaacgattt tgatgtgttt
      781 gccgatcttg cggaattact gaaacctggc ggaaaagaga tctataccga aggtaaagat
      841 gaaatggcgt ggctgaaatt tttctatgat gccgctcaga aaggtgcccg tgcgcaacgc
      901 gtgactatgc cgatgtttaa tgccttctgg cagcaaaata aactgatcga aatgcgccgc
      961 agcgagaaga acgaacagta cgttcgttat gctgatttcc gcgccgatcc ggtgaaaaat
     1021 gcgctgggta cgccaagcgg caaaattgag atttactcca aaacgctgga aaaatttggc
     1081 tataaggatt gcccggcaca tccaacctgg cttgcgcctg atgagtggaa gggtaccgcc
     1141 gacgagaagc agttgcagct tctgaccgca catccggcac accgtttaca tagtcagctt
     1201 aactatgcgg aactgcgtaa aaaatatgcg gttgcagatc gtgaaccaat cactattcat
     1261 accgaagatg ctgctcgctt tggtattgcg aatggtgatc tggtgcgtgt gtggaacaaa
     1321 cgtggtcaga ttctgacagg cgcggtggtg actgacggga tcaaaaaagg cgtggtatgc
     1381 gtgcatgaag gtgcatggcc agatctggaa aatggcttgt gtaaaaacgg cagtgcgaac
     1441 gtgttaacgg cggatatccc cagctcgcag ctggcaaatg cctgtgccgg taactctgcg
     1501 ctggtgtata tcgaaaaata tacgggtaac gcaccgaagt taacggcatt tgataagcct
     1561 gctgttcagg cgtaagaagt gaatagcgcc cggaaacggg cgctgaggtt atgcaaacgt
     1621 aaaactgcct gatgcgctat gcttatcagg cctacatagt ccctgcaata gattgaatta
     1681 gcaagggttt gtaggccgga taaggcattc acgctgcatc cggcagtaat accagacctt
     1741 tacggcttgc gcgcaatcag caccgcgcgt ttaggcgcag gataaccttc aactgtctta
     1801 ctcggatcat gtgggtcgag gaaatcggac agagattcgg taaccatcca ttcagtgcgt
     1861 cgctgctctt cagtagtggt aacgcacaca tccacaacgc ggatatctac aaaaccacac
     1921 ttcttcagcc agtttttcag cgccagcgcg gaagggatga aatagacatt acgcatttgc
     1981 gcgtaacgat cgcctggtac cagcaccgtg ttctcatcgc catcaataac cagcgtttcc
     2041 agcaccagtt caccctcatt caccagttga tctttcaact gccagagatg ctccagcggc
     2101 gaacggcgat ggtaaagcac gcccatcgaa aagacggtat caaaggcttt cagtgccgga
     2161 agctgttcaa tacctaacgg taacaaatgt gcgcgctgat cgttacccag tagtttacgc
     2221 accgcttcaa actggcacag aaacagttgc gtagggtcga tccccaccgc gaggtgcgcg
     2281 cctgcgccaa tcatgcgcca catgtgataa ccgctgccgc agccgacatc cagaatggtg
     2341 cgtccggtta aatcagaaag atggggcaga acacgatccc atttccagtc ggaacgccat
     2401 tcggtatcga tgttgacgcc atacagtgag aacggccctt tgcgccatgg catcaggttc
     2461 cgcataagcg tttcaatgcg tttaatttgc ccggtgctca gtggctcttc gctttcggcg
     2521 gttacgctat gcaataaatc cagacgatac ggtttaattt caggcagaaa ttccaccgcg
     2581 ttggaccact gcttaaacag cccgtgctgc tgctcgcgct gccagttagc aatctgcgcg
     2641 ggcagcgttt cgagccagtg tgaaagatga tttttggcaa tcagagaata aaagttacca
     2701 aagtcgatca tgcagcgtcc tctgctttta atgccaccag tgaaccaaag ttaaagcact
     2761 ggaaccacag ctcgctatgc tcaaaaccgg ctttatgcag gcgtgcttta tgggtttcca
     2821 cggaatcggt cagcatcacg ttttccagca tgctgcgctt ctggctgatc tccagttcgc
     2881 tgtaaccgtt ggcacgttta aagtcgtggt gcatgttgaa caacagttca ccaactttgg
     2941 catcttcgaa actgaatttt tccgaaagca ccagcgcgcc gcccgggttc agtccttgat
     3001 aaattttatc cagtaatgcc tggcgctcgg aaggttccag gaattgcagg gtaaaattca
     3061 gcaccaccat cgatgcgttt tcaatggcga tatcgcgaat atcaccttca atgacgtcta
     3121 ctggcgtagg ggctttatag gcgtcaatat gacgacggca gcgttcaatc atcgccgggg
     3181 agttgtcgat ggcaataatt ttgcaattat catgatgaat gttgcgacgc accgagagcg
     3241 tcgccgcgcc cagagaacaa cccagatcgt aaacctgcgt accaggttga acgaagcgct
     3301 cggctaacat actaatcatg gaaataatat tggaatagcc gggaacggaa cgctggatca
     3361 tatccgggaa gacttcagct acccgttcat caaaggtcca gtcgcccagt ctggcgatag
     3421 gggcagaaaa tagcgtgtcg cggtgagaca taacgtaaaa atccgggaaa aagaaagtgg
     3481 cgtattgtgc gctaacgcag ggagaaaacc aactcccagg gcatatacca aagattcgcc
     3541 agcaccatca gcaacagcgc acaccaggtg gcgctcatgc cggaacgtcg ccagcgaaac
     3601 agacggtgat gaaaaccgta ataatgcatc agacgaccag caagcaaaac gatgccgcaa
     3661 atatgcacca tccaggtttc tgcgccattc atttccataa acagcatcag cacaatcgcg
     3721 atgggaatat attccaccgc gttaccatga atgcgaatag cgctttgcag ttcgctaaaa
     3781 ccaccgtcac cataggcaac gcggtactgc aaacgcaag
//
LOCUS       DAJVSY010000241         3774 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.243, whole genome shotgun sequence.
ACCESSION   DAJVSY010000241 DAJVSY010000000
VERSION     DAJVSY010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3774)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3774)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3774
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.243"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..211)
                     /locus_tag="OQQ19_004013"
     CDS             complement(<1..211)
                     /locus_tag="OQQ19_004013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001215568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WGR domain-containing protein"
                     /protein_id="HCS1805444.1"
                     /translation="MRHFIYQDEKSHKFWAVEQQGNELHISWGKVGTKGQSQIKSFSD
                     AAAAAKAELKLIAEKVKKGYVEQAKD"
     gene            complement(352..2385)
                     /gene="metG"
                     /locus_tag="OQQ19_004014"
     CDS             complement(352..2385)
                     /gene="metG"
                     /locus_tag="OQQ19_004014"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HCS1805445.1"
                     /translation="MTQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGH
                     EVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEE
                     NRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCE
                     VCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSDALQEQVANK
                     MQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSV
                     SFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPTNLFVHGYVTVNGAKM
                     SKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVN
                     LASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALAD
                     LANRYVDEQAPWVVAKQESRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN
                     TELTWDGIQQPLLGHKVNPFKALYNRIDMRQVEALVEASKEEVKAAAAPVTGPLADDP
                     IQETITFDDFAKVDLRVALIENAEFVEGSDKLLRLTLDLGGEKRNVFSGIRSAYPDPQ
                     ALIGRHTIMVANLAPRKMRFGISEGMVMAAGPGGKDIFLLSPDAGAKPGHQVK"
     gene            2517..3626
                     /gene="apbC"
                     /locus_tag="OQQ19_004015"
     CDS             2517..3626
                     /gene="apbC"
                     /locus_tag="OQQ19_004015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310946.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HCS1805446.1"
                     /translation="MNEQSQAKSPEALRAMVAGTLANFQHPTLKHNLTTLKALHHVAW
                     MDDTLHVELVMPFVWHSAFEELKEQCSAELLRITGAKAIDWKLSHNIATLKRVKNQPG
                     INGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQ
                     RPTSPDGTHMAPIMSHCLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDY
                     LVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVE
                     NMSVHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDKGTPTVISRP
                     ESEFTAIYRQLADRVAAQLYWQGEVIPGEISFRAV"
BASE COUNT          903 a          966 c          968 g          937 t
ORIGIN      
        1 tatccttcgc ttgctccaca taccccttct tcaccttctc cgcaatcagc ttaagctccg
       61 cttttgccgc tgccgcagca tctgaaaaac tttttatctg gctttgccct ttggtgccaa
      121 cttttcccca actgatatgc aactcgtttc cctgttgctc aactgcccag aatttatgtg
      181 atttttcgtc ctgatagata aagtgtctca ttctgcatcc ctgtaatttt atccagttga
      241 atgcagatgc taccagtatt tatgcgggtt agagagagac aaaatcgcaa gaaaacaact
      301 ttaggaattt ataaagaaaa ggcgctgtcg atgcagcgcc ttgaaggggg attatttcac
      361 ctgatgaccc ggtttagcac cggcatccgg gcttagcagg aaaatatctt tcccgccagg
      421 accggcagcc atcaccatgc cttcagagat accgaagcgc attttacgtg gtgctaggtt
      481 agccaccata atggtgtgac gaccaatcag tgcctgcgga tccgggtaag cagaacgaat
      541 accggagaag acattgcgtt tttcaccgcc gagatccagc gtcaggcgca gcagtttgtc
      601 agaaccttca acaaactctg cgttttcaat cagcgccacg cgcaggtcaa ctttagcgaa
      661 gtcgtcaaag gtgatggttt cctgaatcgg atcatctgcc agcgggccag ttaccggcgc
      721 ggcagcggct tttacttctt ctttagaggc ttccaccagt gcttcaacct gcctcatatc
      781 gatgcggtta tacagcgcct tgaacggatt cactttgtgg cccagcagcg gttgctggat
      841 accatcccag gtcagttccg tattgaggaa tgcttctgca cgctcggtca gtttcggcag
      901 taccggcttc aggtaagtca tcagcacgcg gaacaggttg atgcccattg agcaaattgc
      961 ctgcaggtcg gcatcgcggc tttcctgttt cgccaccacc cacggagcct gttcatcgac
     1021 atagcggtta gccagatcag ccagcgccat gatttcgcgc acggctttac caaattcacg
     1081 gctttcccac gcttcaccaa tcacttcagc ggcatcagtg aaggttttgt acaactgcgg
     1141 gtcagccagt tcgcttgcca gcacgccgtc aaaacgcttg ttgataaagc ccgcattacg
     1201 ggaggccagg ttaaccactt tgttaacgat atcggcattc acacgctgaa cgaaatcttc
     1261 caggttgaga tcgatatcat cgatgcgcga agagagtttc gcagtgtagt agtaacgcag
     1321 gctgtctgcg tcaaaatgat tcagccaggt gctggcttta ataaaggtgc cgcgagactt
     1381 ggacatcttc gcgccgttca ccgtcacata gccatgaaca aacaggttgg tcggcttgcg
     1441 gaagttgctg ccttccagca tggcaggcca gaacaggctg tggaagtaaa cgatatcttt
     1501 accgatgaag tggtacagct cggcggtgga gtctttcttc cagtattcat cgaagcttac
     1561 gctgtcgccg cgcttgtcgc acagattctt gaaagaaccc atgtagccaa tcggtgcgtc
     1621 cagccagacg tagaaatatt tgcccggcgc gttcggaatt tcaaaaccga agtaaggtgc
     1681 gtcgcgggag atatcccact gttgcaggcc agattcaaac cactcctgca ttttgtttgc
     1741 cacctgctcc tgcaacgcat cgctgcgggt ccatgcctgc aacatttcgc tgaaagaggg
     1801 cagatcaaag aagaagtgtt cagaatcacg cattaccggg gtagcgccag aaaccaccga
     1861 tttcggctcg atcagttcag tcgggctgta ggtcgcgccg cagacttcgc agttatcgcc
     1921 gtattgatcc ggggatttac atttcgggca ggtgcctttc acaaaacggt ccggcaggaa
     1981 catgcctttt tccggatcgt acagctgaga gatggtgcgg tttttaataa aaccgttttc
     2041 tttcaggcga gagtagataa gttctgacaa ctggcggttc tcttcgctgt gtgtcgagtg
     2101 atagttgtca tagctgatgt taaagcctgc gaaatcagtc tgatgctcct gactcatttc
     2161 gccaatcatc tgctccgggg tgataccaag ctgctgagct ttcagcatga tcggtgtacc
     2221 gtgggcatcg tcggcgcaga tgaagttgac ctcgtggccg cgcattcgct ggtaacggac
     2281 ccagacatca gcctggatgt gctccagcat atggccgagg tggattgagc cgttagcgta
     2341 cggcagtgcg cacgtcacca gaattttctt cgcgacttga gtcatagtag gcattacttc
     2401 ttaatagtga aaaggggtta gatagtacca aatgggaaaa tgttaagtaa gtacttctct
     2461 atattcttca ggtaaactat cagctgatgg tttatctata caaaaaagga gtcgggatga
     2521 acgaacaatc ccaggccaaa tcaccagaag ccttgcgcgc aatggtcgcc gggacactgg
     2581 ccaattttca gcacccaacc ctgaagcata acctcaccac gctgaaagcg ttgcaccatg
     2641 tcgcctggat ggacgacacg ttgcatgtgg aactggttat gccattcgtc tggcatagcg
     2701 cgtttgaaga gttaaaagag caatgtagcg ccgaactgct gcgtatcacc ggggcgaaag
     2761 ctatcgactg gaaactgtcg cacaatatcg ccaccttaaa acgcgtgaag aatcagccgg
     2821 gtattaatgg tgtgaagaac atcattgcgg tcagttccgg taaaggcggc gtgggtaaat
     2881 cctccacggc ggtaaacctg gcgctggcac tggcggcgga aggggcgaaa gtcggcattc
     2941 tggacgccga tatctacggc ccatcaattc ccaccatgct gggcgcagaa aatcagcgtc
     3001 caacttcgcc ggacggtacc catatggcac cgattatgtc tcattgcctg gcaaccaatt
     3061 caattggtta tctggtcact gacgacaatg cgatggtgtg gcgtggaccg atggcgagca
     3121 aggcgttaat gcagatgttg caggaaacct tgtggccgga tctcgactat ctggtgcttg
     3181 atatgccgcc aggcaccggt gacattcaat tgacgctggc gcaaaacatt ccagtaactg
     3241 gtgcagtcgt ggtcaccacc ccgcaggaca tcgcgttgat cgatgcgaaa aaaggcattg
     3301 tgatgttcga gaaagtcgag gttccggtgc ttggtattgt cgagaacatg agtgtgcata
     3361 tttgcagtaa ctgtggtcac catgaaccga ttttcggtac cggtggtgca gagaaactgg
     3421 ctgaaaaata ccacacacag ctgctggggc agatgccgtt acacatctcc ttacgtgagg
     3481 atctcgataa aggcacgcca acggttatca gccgtccgga gagcgaattt accgctatct
     3541 accgccagct ggctgaccgc gttgcagctc agctctactg gcagggtgaa gtcattccag
     3601 gcgagatttc cttccgcgcg gtctaacgcc tattaaccat tctggttatt cttcatacac
     3661 cgcagagatg ttacattgat gcggtgtatt agtttttgcc gcattaatga acacttattt
     3721 aatactgcga atattctgcg gaccttcgtc cgaaactcta caaagtcgat tgat
//
LOCUS       DAJVSY010000242         3762 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.244, whole genome shotgun sequence.
ACCESSION   DAJVSY010000242 DAJVSY010000000
VERSION     DAJVSY010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3762)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3762)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3762
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.244"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..2357
                     /gene="yejO"
                     /locus_tag="OQQ19_004016"
     CDS             <1..2357
                     /gene="yejO"
                     /locus_tag="OQQ19_004016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311108.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="autotransporter YejO"
                     /protein_id="HCS1805447.1"
                     /translation="GGYQYIEMNGTAEYSVLNDGYQIVQMGGAANQTTLNNGVLQVYG
                     AANDPTIKGGRLIVEKDGITVLAAIEKGGLLEVKEGGLAIAVDQKAGGAIKASTRVME
                     AFGINRLGQFEIKNGIANNMLLENGGSLRVEENDFAYNTTVDSGGLLEVMDGGTATGV
                     DKKAGGKLIVSTNALEVSGTNSKGQFSIKDGVSKNYELDDGSGLIVMEDTQAIDTILD
                     EHATMQSLGKDTGTKVQANAVYDLGRSDQNGSITYSSKAISENMVINNGRANVWAGTM
                     VNVSVRGNDGILEVMKPQINYAPAMLVGKVVVSEGASFRTHGAVDTSKADVSLENSVW
                     AIIADITTTNQNTLLNLANLAMSDANVIMMDEPVTRSSVTASAENFITLTTNTLSGNG
                     NFYMRTDMANHQSDQLNVTGQATGDFKIFVTDTGASPAAGDSLTLVTTGGGDAAFTLG
                     NAGGVVDIGTYEYTLLDNGNHSWSLAENRAQITPSTTDVLNMAAAQPLVFDAELDTVR
                     ERLGSVKSVSYDTAMWSSAINTRNNVTTDAGAGFEQTLTGLTLGIDSRFSREESSTIR
                     GLFFGYSHSDIGFDRGGKGNIDSYTLGAYAGWEHQNGAYVDGVVKVDRFANTIHGKMS
                     NGATAFGDYNSNGAGAHVESGFRWVDGLWSVRPYLAFTGFTTDGQDYTLSNGMRADVG
                     NTRILRAEAGTAVSYHMDLQNGTTLEPWLKAAVRQEYADSNHVKVNDDGKFNNDVAGT
                     PGVYQAGIRSSFTPTLSGHLSVSYGNGAGVESPWNTQAGVVWTF"
     gene            complement(3032..3313)
                     /locus_tag="OQQ19_004017"
     CDS             complement(3032..3313)
                     /locus_tag="OQQ19_004017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805448.1"
                     /translation="MTEAEILGLIRRAGGISQQTDEQATQPDSVTAENYARVVAEVMR
                     RDGIQLNDVDMRNIRIRVLEMLAYNRRVALYRETEKITYHWKKPERLRR"
     gene            complement(3594..>3762)
                     /locus_tag="OQQ19_004018"
     CDS             complement(3594..>3762)
                     /locus_tag="OQQ19_004018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000565611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805449.1"
                     /translation="SEETEHRFDEGLQIYGYSPEDVSKARNKMAGFLAGWRHAVSVRR
                     ASMEQSADTEQ"
BASE COUNT          991 a          818 c          981 g          972 t
ORIGIN      
        1 acggagggta tcagtacatt gaaatgaatg gtaccgcaga atactcagta ttaaatgacg
       61 gttatcaaat tgttcaaatg ggtggcgcgg caaaccagac taccctcaat aatggtgtgc
      121 tacaggttta tggcgcagcg aatgatccca cgattaaagg cgggcgctta atcgttgaaa
      181 aagatgggat taccgtcctt gccgctatcg aaaagggagg attactggag gttaaagagg
      241 ggggattagc gattgcggta gatcagaaag caggcggtgc tattaaagca agcacgcggg
      301 tcatggaggc attcggaata aaccgtctcg gtcagttcga aatcaagaat ggtattgcta
      361 acaatatgct gttggaaaac ggcggaagtt tgcgagttga agaaaatgac ttcgcttata
      421 atactactgt agatagtggc ggcttactgg aggttatgga tggcgggact gcaactggcg
      481 ttgataaaaa agcaggcgga aaattaattg tctcaacgaa tgcgctggaa gtgagtggta
      541 caaacagtaa aggccaattt agtataaaag atggtgtgtc aaaaaattat gaactggatg
      601 atggttccgg gctcattgtt atggaggaca cgcaggccat tgatactatc cttgatgagc
      661 atgccactat gcaatcgctg ggaaaggata ctggtacgaa agtgcaggca aatgcggtat
      721 atgatctcgg tcgatcagac cagaatggaa gtatcacgta ttcctctaaa gccatctctg
      781 aaaatatggt tatcaacaat ggccgcgcta atgtctgggc tggcacaatg gttaacgtgt
      841 cagtcagagg gaatgatggc attcttgagg tcatgaagcc gcaaataaat tatgcacccg
      901 ctatgttggt gggtaaggta gtggtttctg agggcgcttc ttttagaacg catggtgccg
      961 tggataccag caaagcggac gtttcgctcg aaaatagcgt atgggccatc attgccgata
     1021 tcactacgac gaaccaaaac accctcctca acttagccaa ccttgcgatg tctgacgcaa
     1081 atgtgattat gatggatgag ccagtgactc gttcatcagt gacggcaagt gcggaaaatt
     1141 tcattacgtt gaccaccaat accctgtcgg gaaacggcaa tttttatatg cgtaccgata
     1201 tggctaatca tcagagcgat cagctcaacg tcaccggtca ggcaacaggt gatttcaaaa
     1261 tattcgtgac ggacaccggt gccagcccgg cagcaggaga tagccttaca ctggtaacaa
     1321 cgggcggcgg tgatgctgca tttacgttgg gcaatgccgg aggcgttgtt gatatcggta
     1381 cgtatgaata taccttgctg gataatggca accatagctg gagtttggca gagaatcgcg
     1441 cgcaaattac cccttcaacc actgatgtgc tgaatatggc ggccgcacaa ccgctggtat
     1501 ttgatgcaga actggacacc gtgcgtgagc gtcttggtag cgtaaaaagc gttagttacg
     1561 atacggcgat gtggagttcg gcaattaaca cccgcaacaa cgtgaccact gatgcgggag
     1621 ctggttttga gcaaacattg acgggcctga cgctcggtat cgatagccgt ttctcccgtg
     1681 aagaaagcag tacaattcgc ggcttgttct ttggttactc tcattctgat attggttttg
     1741 atcgcggcgg aaaaggtaat atcgatagct ataccctggg ggcttatgcc ggttgggagc
     1801 atcagaacgg tgcctatgtt gatggggtgg tgaaagttga ccgttttgcc aacaccatcc
     1861 atggcaagat gagtaatggg gcaacagcgt ttggcgatta caatagtaac ggcgcgggtg
     1921 ctcatgttga gagcgggttc cgttgggttg acggattgtg gagtgttaga ccctatctgg
     1981 cctttaccgg ctttaccaca gatggtcagg actacacgtt atcaaacggc atgcgcgctg
     2041 atgtgggaaa tacccggata ttacgcgctg aagcgggaac ggcggtaagc tatcacatgg
     2101 acctgcaaaa tggtacgacg ctggaaccct ggctgaaagc cgccgtacgt caggaatacg
     2161 ccgattctaa ccatgtgaaa gttaatgacg atggcaaatt taataatgat gtggctggaa
     2221 cccctggcgt ttatcaggct gggataaggt catcgtttac cccgacgtta agcggtcatt
     2281 tgtcagtcag ctatggcaat ggcgcagggg tagaatcgcc gtggaatact caggcgggag
     2341 tggtctggac gttctgataa cagaaaataa acaggctgtg atgtgtcacg gtctgtttat
     2401 caaattaatt gcagatataa aaaaaccaac cgtaaaggtt ggttttttct tgggattcac
     2461 gagagtagtt taattgagcg tgtaacttca tgatttaaaa taatgtatat gattcaactt
     2521 ttaaaccgta taaccaaacg tataactaaa atgatttgct gaaaaaatgc acaattcagg
     2581 gtcggatttt cccggatgtt taatttataa aaacgaagct ggtggatgat ctgcgtggtg
     2641 atttccacca ttcagagcag gggcggtcat catgcccatg ccataacaaa aaccccatat
     2701 tcgtggtttt tctgtgttgt ggctattctg ccgttgccgt gctggtggat atttccgtta
     2761 tggggatcac catatcggca tcatgcccac cagccagcgc aattttgcgc tttgctttaa
     2821 gttcagcaag ttaccgcgcc ggattacgcc aatggctgtt tccgaaagaa tcaacgggtt
     2881 aggccttaat gggctgcgtg gtaattatca gcatccagaa tatgacgggt tatgtttccg
     2941 acctcctcaa tttgaggttc ccgaaaatat caacgggtta ggctggtttc cccgatgttc
     3001 gccgctggcg aatttcgaaa atatcaacca gttaccgccg caaccgctcc ggcttcttcc
     3061 agtggtatgt aattttctcc gtttcccgat acagtgccac gcggcgattg taggccagca
     3121 tttcaagaac gcggatccgt atgttgcgca tatccacatc attaagctgg ataccatcac
     3181 ggcgcatcac ctcagcaaca acacgcgcat aattttcggc tgtcacgctg tccggctgcg
     3241 tggcctgttc gtcagtctgc tggctgattc caccagcacg gcggattaat cccagtattt
     3301 cggcttctgt cattgtgcac ctatcgttct gattgtctgg tgtcgtcggg tccttcctgg
     3361 aattatggac ccgttacggg gcggcgacct cgcgcgtttt cactatttat gaaaattttt
     3421 cgggatccat gtccggtttc tctacaagtt aaccatatga aaaatataaa aacatgcttt
     3481 ccatgaaccg gacatgcgca aaaaacagac actaaaaccg gacatcgaac cagttaaccg
     3541 aaagtgtgca caaatcacat gcattgctgc gagtgattaa caagttatcg gctttactgt
     3601 tctgtatcgg ctgattgctc catgctggca cggcgaacgc ttacggcatg acgccaccca
     3661 gccagaaagc cagccatttt atttcgtgcc ttgctcacat cttccggtga atagccgtaa
     3721 atctgcaaac cttcatcaaa tcgatgttct gtttcttcac tg
//
LOCUS       DAJVSY010000243         3737 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.245, whole genome shotgun sequence.
ACCESSION   DAJVSY010000243 DAJVSY010000000
VERSION     DAJVSY010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3737
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.245"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..860)
                     /locus_tag="OQQ19_004019"
     CDS             complement(<1..860)
                     /locus_tag="OQQ19_004019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000094541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HCS1805450.1"
                     /translation="MSSHFTPFTLKDISRPGGGFAMLAVDQREAMRLMFAAAGQPKPI
                     ADSVLTDFKVAATRILSPYASAVLADKQFCLEQIVEQGAVANSCGLIVAADLFIPGNG
                     IPVDSVEIDMSVDPHKAREMGAKAMKLLVLWREDEPAEERLAMVDKFVRRCRSAGLVS
                     IIEPVVRPPRRGWDFDRESAIVAAAAELGGTEADLYKAEMPLGGKGDEKTLLAACQQL
                     NDQMKMPWVILSSGVDADIFGRAVSIAMKGGASGFLAGRAVWASVVGAQDPQTMLRDV
                     SVPRLQRLAE"
     gene            complement(885..1763)
                     /gene="yihU"
                     /locus_tag="OQQ19_004020"
     CDS             complement(885..1763)
                     /gene="yihU"
                     /locus_tag="OQQ19_004020"
                     /EC_number="1.1.1.373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001318159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfolactaldehyde 3-reductase"
                     /protein_id="HCS1805451.1"
                     /translation="MATIAFLGLGQMGSPMANNLLQKGHSLQVFDVNAQAVDALVTQG
                     ATAAQTQAEAAAGAEFIITMLPNGDIVRQVLLGEKGVCEAVSSDALLIDMSTIHPLQT
                     DALIRELQEKGISMMDAPVGRTSVNAIDGTLLILAGGTDEQIARARPILMCMGNELVE
                     AGGPGMGIRVKLINNYMSIALNALSSEAAVLCESLGLNLDVAIKVMSGTAAGKGHFTT
                     TWPGKVLKGDLSPAFMVDLALKDLRIAVDVARETGTPLNMGIAAESYYAAASQDGKGR
                     QDWSALLNQVRQQAGL"
     gene            1936..2832
                     /locus_tag="OQQ19_004021"
     CDS             1936..2832
                     /locus_tag="OQQ19_004021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000196715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS1805452.1"
                     /translation="MTRIACVGITVQDRIYSLPTLPEGGGKYQANHYLEIGGGPAATA
                     AVAIAKLGVEVDFIGRVGDDSCGNTLLAELEGWGVNTAFCRRYPNARSSQSAILVDQH
                     GERIIVNYPSPDLGTDAEWLEAIDFSRYNLILADVRWHSGTEKAFSLARLAGVTTLLD
                     ADMTPQDISPLVALADHAVFSTPGLKRMTGLQSPEEGLFQATTQTAGKVYVTLGSEGS
                     LWIEDGHLCQQEAFSVNVVDTTGAGDVFHGALAVALAEKMPTKEAIRFASAVAAMKCT
                     QPGGRAGIPNREQTESFLSLYA"
     gene            2872..3660
                     /locus_tag="OQQ19_004022"
     CDS             2872..3660
                     /locus_tag="OQQ19_004022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000022208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1805453.1"
                     /translation="MSIIEVTGNPRHDQLVHLIAERGYMNIEELAQLLDVSTQTVRRD
                     IRKLSEQGLITRHHGGAGRVSSVMNTAFEQRELSLTAEKRAIAEAVADYLPERCTVFI
                     TIGTTVEAVARALLNRRDLRIITNSLRVAQILYKNQDIEVMVPGGTLRAHNGGIIGPG
                     AVDFIEGFRADYLITSIGAIEHDGTLLEFDLNEALVARTMIKHARNTLLVADHTKFAA
                     SAAVSIGNARNVRAFFTDAPPPNSFCQLLSEENVELVVAEQEVS"
BASE COUNT          962 a          955 c          902 g          918 t
ORIGIN      
        1 atttctgcca accgttgtaa acgaggaaca gagacatcgc gcagcatagt ttgtggatct
       61 tgtgcaccaa caaccgacgc ccaaaccgct cgtccagcca ggaagcccga cgcaccacct
      121 ttcatggcaa tacttactgc acggccaaaa atatcggcat caacgccaga agaaagaatt
      181 acccacggca tcttcatctg atcgttaagt tgctgacagg cggcaagtaa ggttttttca
      241 tcgcctttgc cccctaatgg catctcggct ttgtaaagat cagcctctgt tccaccaagc
      301 tctgcggcgg cggcaacaat ggcgctttca cgatcaaagt cccaaccgcg acgaggtgga
      361 cgcaccacag gttcaataat gctcaccagc ccggcactac ggcagcgacg aacaaattta
      421 tcaaccattg ccagacgttc ctctgcgggt tcatcttcac gccagagtac aagtaatttc
      481 attgccttag cccccatttc acgggcttta tgcgggtcga cggacatatc tatttcaacg
      541 ctatcaaccg ggatgccatt acctgggata aaaagatcgg cagcgacaat caggccgcaa
      601 gaattagcaa cagcgccctg ctcgactatt tgctcaagac aaaattgttt atccgccaga
      661 acggcagaag cataaggaga aaggattcgg gtcgcggcaa ctttaaaatc ggtgagtaca
      721 ctgtcggcga tgggttttgg ctgccctgct gccgcaaaca tcaagcgcat ggcctcacgc
      781 tgatcgacag ctaacatggc aaatccacca cctgggcggg agatatcttt cagcgtaaat
      841 ggggtgaagt gggatgacat agaaactcct gttaatagat aaaattaaag accagcctgc
      901 tggcgaacct gatttagcag ggcactccag tcctgccgcc ctttgccgtc ttgacttgct
      961 gcagcgtaat aactttctgc tgcaatcccc atattgagcg gtgtccccgt ctcccgagcg
     1021 acgtcaactg caatacgcag atctttcaac gccagatcca ccatgaaggc gggtgaaaga
     1081 tcgcctttca gcactttgcc aggccaggtg gtcgtaaaat gtcctttccc tgctgccgta
     1141 ccactcatca ccttaattgc gacatcaaga tttaatccca gtgactcaca taacacagcg
     1201 gcctcggagg acagcgcatt aagcgcaatg ctcatatagt tgttaattag cttcacgcgg
     1261 atccccattc ctgggccgcc agcctcgacc agctcattac ccatgcacat aagaatcggg
     1321 cgtgcacgtg caatctgctc atcagtgcca cccgctaaaa tcagcaatgt gccatcaatc
     1381 gcattcacgg acgttctgcc cacgggagcg tccatcatac tgatgccttt ttcttgtaac
     1441 tcccgtatta atgcatcggt ctgtaaggga tgaatagtcg acatatcaat caataacgcg
     1501 tcagatgaaa cagcctcaca gacgcctttt tcccccaaca gaacctgtcg aacaatgtca
     1561 ccattgggaa gcatagtgat gataaattca gcgcctgctg ctgcttccgc ttgggtttgt
     1621 gccgcagtgg ccccctgcgt aactagcgca tcgacggcct gtgcattgac atcaaatacc
     1681 tgcaatgaat gccctttttg caatagattg ttagccattg ggctacccat ctgccccagc
     1741 ccgagaaatg caatggttgc catgaatact ctcctgtctg acattgacaa aataatgaca
     1801 attgaaaatt cgtttttgtc tgtttttgag catatttgtg atttatgttc aaaaacacga
     1861 cacgcatcac taatttgatc atttgcgtca tttaaattga ccaaagacga caaaattaaa
     1921 caggacaaga caaatatgac cagaattgca tgcgtgggta tcacagttca ggacagaatt
     1981 tattctttgc ccactctgcc ggagggcggc gggaaatatc aggcaaatca ttatcttgag
     2041 attggtggcg gcccggcagc aacagccgct gttgcaatcg caaagcttgg cgtggaggtt
     2101 gatttcatcg gtcgcgtcgg cgatgacagt tgtggaaata ccttacttgc agaacttgag
     2161 ggttggggcg tcaataccgc attttgccgc cgatatccta acgcccgttc gtcgcaatca
     2221 gcgatcctcg ttgatcagca tggcgaacgg attatcgtta attatccaag tcctgatctc
     2281 ggtactgatg ccgaatggtt agaagcgatc gatttctctc gttataatct gattctggcc
     2341 gatgttcgct ggcatagcgg tactgaaaaa gcattctcgc tagcgcgcct tgcgggtgtg
     2401 acaacgcttt tagacgccga tatgacaccg caggatattt ctccacttgt cgcgcttgcc
     2461 gatcacgccg tgttctcaac accagggctg aaacgcatga ctggcctgca gtctcctgaa
     2521 gaaggtttgt tccaggcaac gacacaaaca gcaggtaaag tgtatgttac gctgggttct
     2581 gaaggatcgt tgtggattga agatggtcat ttgtgtcaac aggaggcatt ttctgtcaat
     2641 gtggttgata ccactggagc aggcgatgtt tttcacggcg cactcgcggt agcgttggca
     2701 gaaaaaatgc caacaaaaga ggctattcgt tttgccagtg cggttgccgc gatgaaatgt
     2761 acccagcctg gcggtcgggc cggcattcct aatcgtgagc aaaccgaatc atttttgtca
     2821 ctttatgcgt aaaatggtaa acatctaccg aggaggggca agggagtatt catgagtatc
     2881 atcgaagtga caggtaatcc acgccatgac caactcgttc atctaatcgc agaacgcggt
     2941 tatatgaata ttgaagaact ggcacaactg ctggatgttt caacgcaaac cgtgcgccgg
     3001 gatatccgaa aactcagtga gcagggcttg atcacccgtc atcatggagg ggccgggcgc
     3061 gtctccagcg tcatgaatac cgcttttgag caacgggaac tttcgctcac cgccgagaaa
     3121 cgggcgatcg ctgaggcagt cgccgattac cttcccgaac gctgtaccgt ctttatcacc
     3181 atcggtacaa ccgtagaagc cgttgccagg gcattactca accggcgtga tttacgcatt
     3241 atcactaaca gcctacgtgt ggcacagatt ctttataaga atcaggatat tgaagtgatg
     3301 gtgccgggag gcactttacg cgctcataac ggcgggatta tcggcccagg agccgtggat
     3361 tttattgaag gcttccgcgc agattattta atcaccagta taggtgccat tgaacatgac
     3421 ggcaccctac tggaatttga tctaaatgaa gcgttagtcg cgagaacgat gattaaacat
     3481 gcgcggaata cattgttagt ggccgatcat acgaagtttg ccgcgtctgc tgccgtttca
     3541 attggcaatg cacggaatgt cagggctttt tttactgatg ccccgcctcc caattctttc
     3601 tgccagttgt taagtgaaga gaatgttgaa ctggtggttg ccgagcaaga agtatcctga
     3661 aattgaaatt tcggaaaatc cgctgggaat ttcagcggat tttgttttcc ataagcaaaa
     3721 aaaacctgcc agcgatg
//
LOCUS       DAJVSY010000244         3727 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.246, whole genome shotgun sequence.
ACCESSION   DAJVSY010000244 DAJVSY010000000
VERSION     DAJVSY010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3727)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3727)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3727
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.246"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(118..2187)
                     /gene="glyS"
                     /locus_tag="OQQ19_004023"
     CDS             complement(118..2187)
                     /gene="glyS"
                     /locus_tag="OQQ19_004023"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001291772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HCS1805454.1"
                     /translation="MSEKTFLVEIGTEELPPKALRSLVESFAANFTVELDNAGLAHGT
                     VQWFAAPRRLALKVANLAEAQPDREIEKRGPAIAQAFDAEGKPSKAAEGWARGCGITV
                     DQAERLTTDKGEWLLYRAHVKGESTEALLPNMVATSLAKLPIPKLMRWGASDVHFVRP
                     VHTVTLLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPEILRERGKVIAD
                     YEERKAKIKADAEEAARKIGGNADLSESLLEEVASLVEWPVVLTAKFEEKFLAVPAEA
                     LVYTMKGDQKYFPVYANDGKLLPNFIFVANIESKDPQQIISGNEKVVRPRLADAEFFF
                     NTDRKKRLEDNLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAEQIGADVNHATRAGLL
                     SKCDLMTNMVFEFTDTQGVMGMHYACHDGEAEDVAVALNEQYQPRFAGDDLPSNPVAC
                     ALAIADKMDTLAGIFGIGQHPKGDKDPFALRRAALGVLRIIVEKNLNLDLQTLTEEAV
                     RLYGDKLTNANVVDDVIDFMLGRFRAWYQDEGYTVDTIQAVLARRPTRPADFDARMKA
                     VSHFRTLDAAAALAAANKRVSNILAKSDEVLSDRVNASTLKEPEEIKLAMQVVVLRDK
                     LEPYFAEGRYQDALVELAELREPVDAFFDKVMVMVDDKELRLNRLTMLEKLRELFLRV
                     ADISLLQ"
     gene            complement(2197..3108)
                     /gene="glyQ"
                     /locus_tag="OQQ19_004024"
     CDS             complement(2197..3108)
                     /gene="glyQ"
                     /locus_tag="OQQ19_004024"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HCS1805455.1"
                     /translation="MQKFDTRTFQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMT
                     CLRALGPEPMAAAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLGSL
                     KELGMDPTIHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVT
                     GEITYGLERLAMYIQGVDSVYDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEYADVDF
                     LFTCFEQYEKEAQQLLALENPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILRI
                     RTLTKAVAEAYYASREALGFPMCNKDK"
     gene            complement(3203..3502)
                     /locus_tag="OQQ19_004025"
     CDS             complement(3203..3502)
                     /locus_tag="OQQ19_004025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YsaB family lipoprotein"
                     /protein_id="HCS1805456.1"
                     /translation="MMMNAFFPAMALMVLVGCSTPSPVQKAQRVKVDPLRSLNMEALC
                     KDQAAKRYNTGEQKIDVTAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR"
BASE COUNT          864 a         1006 c          958 g          899 t
ORIGIN      
        1 cataaaatta atatatgaga taatctttat tcagcagaag attattaaag gttgctgtat
       61 tatttagcga taataaaaaa agcctgccag atggcaggct ttttaataac ggcgttatta
      121 ctgcaacagc gaaatatccg caacgcgcag gaacagttcg cgcagtttct ccagcatggt
      181 cagacggttg agacgcaatt ctttgtcatc aaccatgacc atcactttat cgaagaaagc
      241 atcaaccggc tcacgcagct ctgccagttc gaccagcgca tcctggtaac gaccttccgc
      301 aaagtacggc tccagcttgt cacgtagcac cacaacctgc atcgccagtt taatttcttc
      361 cggctctttc agggtagagg cattcacgcg gtcgctcagc acttcgtcag atttcgccag
      421 aatgttagat acacgtttgt tcgccgccgc cagtgcagca gctgcatcca gggtacggaa
      481 atgcgatacc gctttcatac gggcatcgaa atcagccgga cgagtcggac gacgcgccag
      541 taccgcctgg atggtgtcaa cggtgtaacc ttcgtcctga taccaggcgc ggaagcgacc
      601 gagcataaag tcgataacat catcaaccac gttggcgtta gtcagcttat cgccatacag
      661 acgcactgct tcttcggtca gcgtttgcag atcaaggttg aggttcttct caacgataat
      721 tcgcagcacg ccaagtgcgg cacgacgcag cgcaaacggg tctttgtcgc ctttcggatg
      781 ctgaccgata ccgaagatac ccgccagagt atccatctta tcagcaatcg ccagcgcaca
      841 agctaccggg ttggacggca ggtcatcacc ggcaaagcgc ggctgatact gctcattcag
      901 cgcgacggct acgtcttccg cttcgccatc gtgacacgcg tagtgcatcc ccataacgcc
      961 ttgggtgtcg gtgaactcga agaccatgtt ggtcatcagg tcacacttag acagcaggcc
     1021 cgcacgggtt gcgtggttaa cgtcagcgcc aatctgttca gcaatccagc cagccagcgc
     1081 ctggatgcgg tcagttttgt cacgcagcgt acccagctgt tgctggaaca gcacggtttg
     1141 caggcgcggc aggttatctt ccagacgttt tttacggtcg gtattgaaga agaactcggc
     1201 atccgccaga cgtggacgaa cgactttctc gttaccagag ataatttgct gcggatcttt
     1261 cgattcgatg ttggcaacga agatgaagtt cggcagcagt ttgccatcgt tcgcatacac
     1321 cgggaagtat ttctggtcac ctttcatggt gtaaaccagg gcttcagccg gcaccgcgag
     1381 gaatttctct tcgaattttg cggtcagaac gaccggccac tccaccagcg aagccacttc
     1441 ttccagcagg ctttcgctta agtcagcgtt accgccaatc ttacgcgctg cttcttcggc
     1501 atcggcttta atcttcgctt tacgttcttc gtaatcggcg atgactttcc cgcgctcacg
     1561 cagaatttcc ggatactgat cggcgttgtc gatggtgaat tccggttcgc ccataaagcg
     1621 gtggccgcga atcacgcgat cggactgaat gcccagaata gttgccggaa tgactttgtc
     1681 gcccagcagc agggtcacgg tgtgcaccgg acgcacgaag tgcacgtcgc ttgcgcccca
     1741 acgcatcagt ttcgggatcg gcagtttcgc cagagaagtc gcaaccatat tcggcagcag
     1801 tgcttcggtg ctttcgccct tcacatgggc gcgatacagc agccattcgc ctttatcggt
     1861 agtcagacgc tcagcctggt caacggtaat accgcaacca cgcgcccaac cttctgccgc
     1921 tttgctcggt ttgccttcag cgtcgaacgc ctgggcaatc gccgggccgc gtttttcgat
     1981 ttcacgatcc ggttgcgctt ccgccaggtt agctactttc agcgccagac gacgcggagc
     2041 agcaaaccat tgaacggtgc cgtgtgcgag gccagcgtta tccagctcca cagtaaaatt
     2101 cgcagcaaag gactcaacca ggctgcgcag tgcttttggt ggcagctctt cagtgccgat
     2161 ttccaccaga aaagttttct cagacatagc cgcctcttac ttatctttgt tgcacatcgg
     2221 gaagccgagg gcttcacggg aagcgtagta tgcttctgcc actgctttgg tcagggtgcg
     2281 aatgcgcaga atgtagcgct gacgctcggt gacggagatg gctttacgcg catccagcag
     2341 gttgaagctg tgggcggctt tcagaatacg ctcgtaggct ggcagcggca gcggattttc
     2401 cagcgccagc agctgctgcg cttctttctc gtactgctca aagcaggtga acaggaagtc
     2461 cacatccgcg tattcgaagt tgtaagtgga ctgctccact tcgttctgat ggaacacgtc
     2521 gccgtaggtg gttttaccca gcgggccgtc gctccagacc aggtcgtaaa cgctgtctac
     2581 gccctgaatg tacatggcca gacgttccag accgtaggtg atctcgccgg taaccggttt
     2641 acactccaga ccaccaacct gctggaagta agtgaactgc gtcacttcca tgccgtttag
     2701 ccacacttcc cagcccagtc cccaggcacc cagagtcggg ttttcccagt tatcttccac
     2761 gaaacggatg tcgtgaatag tcgggtccat gcccagctct ttcagagaac cgaggtacag
     2821 ctcctgaata ttgtccggcg atggcttaat gaccacctgg aactgatagt agtgctgtaa
     2881 acggttgggg ttttcgccgt agcgaccatc ggtcgggcga cgagaaggct gaacataagc
     2941 agccgccatc ggttctggcc ccagcgcgcg cagacaggtc attgggtgag aggttcccgc
     3001 gccgacttcc atgtccaatg gttgaacaat ggtgcagccc tggcgagccc agtaatcctg
     3061 taaggtcagg atcaagccct ggaaggtcct ggtatcaaac ttttgcatat tatttcgtgc
     3121 tggatacgtg tggatttaaa ggaagggatc agtatacccg ctggatggaa gatatacagt
     3181 acgaaacggg aaaaagcagg gcttaacgca tggaaagatg caaaaaatgg ccatctgcgt
     3241 caaaagaaca gacaaactgc tctttacgga aggtataacc gcgcatttca tagcttccct
     3301 ggaactgttc gaaggcggtg acgtcgattt tttgctcgcc ggtgttataa cgttttgccg
     3361 cctgatcctt gcataacgct tccatattca acgaacgcag aggatcaacc tttacccgtt
     3421 gtgctttctg cacgggtgac ggtgtagaac aacccactag caccataagc gccattgccg
     3481 gaaagaaagc gttcatcatc attaaattac cgtctggttt gcaggtgagt cttattattt
     3541 atatcggtat agtggctgat atcttacgaa tttccttaag cctctataag ctgtagtgat
     3601 aaaactcaga ttattccagt gcgccaacca aatgatttat cggtcagact ttttttaacc
     3661 agatacagag acacagatgc aggtaatgct gccaacttac tgatttagtg tatgatggtg
     3721 attttaa
//
LOCUS       DAJVSY010000245         3723 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.247, whole genome shotgun sequence.
ACCESSION   DAJVSY010000245 DAJVSY010000000
VERSION     DAJVSY010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3723
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.247"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            35..262
                     /locus_tag="OQQ19_004026"
     CDS             35..262
                     /locus_tag="OQQ19_004026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HCS1805457.1"
                     /translation="MRLIVVSIMVTLLSGCGSIISRTIPGQGHGNQYYPGVQWDVRDS
                     AWRYVTILDLPFSLVFDTLLLPIDIHHGPYE"
     gene            complement(263..637)
                     /locus_tag="OQQ19_004027"
     CDS             complement(263..637)
                     /locus_tag="OQQ19_004027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309456.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acidic protein MsyB"
                     /protein_id="HCS1805458.1"
                     /translation="MTMYATLEEAIDAAREEFLADNPGIDAEDANVQQFNAQKYVLQD
                     GDIMWQVEFFADEGEEGECLPMLSGEAAQSVFDGDYDEIEIRQEWQEENTLHEWDEGE
                     FQLEPPLDTEEGRAAADEWDER"
     gene            complement(720..1944)
                     /gene="mdtG"
                     /locus_tag="OQQ19_004028"
                     /pseudo
     CDS             complement(720..1944)
                     /gene="mdtG"
                     /locus_tag="OQQ19_004028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415571.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtG"
     gene            complement(2116..3036)
                     /gene="lpxL"
                     /locus_tag="OQQ19_004029"
     CDS             complement(2116..3036)
                     /gene="lpxL"
                     /locus_tag="OQQ19_004029"
                     /EC_number="2.3.1.241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid IV(A) lauroyltransferase"
                     /protein_id="HCS1805459.1"
                     /translation="MTNLPKFSTALLHPRYWLTWLGIGVLWLVVQLPYPVIYRLGCGL
                     GKLALRFMKRRAKIVHRNLELCFPEMSEQERRKMVVKNFESVGMGLMETGMAWFWPDR
                     RIARWTEVIGMEHIRDVQAQKRGILLVGIHFLTLELGARQFGMQEPGIGVYRPNDNPL
                     IDWLQTWGRLRSNKSMLDRKDLKGMIKALKKGEVVWYAPDHDYGPRSSVFVPLFAVEQ
                     AATTTGTWMLARMSGACLVPFVPRRKPDGKGYQLIMLPPECSPPLDDAETTAAWMNKV
                     VEKCIMMAPEQYMWLHRRFKTRPEGVPSRY"
     gene            3261..3723
                     /locus_tag="OQQ19_004030"
                     /pseudo
     CDS             3261..3723
                     /locus_tag="OQQ19_004030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415573.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
BASE COUNT          915 a          951 c          945 g          912 t
ORIGIN      
        1 ttatgccggt atttttttac ggaagaggta tcaaatgcgt ttaattgtgg tgagcatcat
       61 ggtgaccttg ctgagtggct gtggcagcat tattagtcgc actataccgg ggcaggggca
      121 tggcaaccaa tattatcccg gtgtgcaatg ggatgtgcgt gactccgcct ggcgttatgt
      181 cacaatcctt gatctgccat tctccctggt ttttgatact ttactgctgc cgatcgacat
      241 tcatcatggc ccgtatgagt gattaacgtt catcccactc atcagctgct gcgcgtcctt
      301 cctcggtatc cagcggtggc tcaagctgaa attccccctc gtcccattca tgtaatgtat
      361 tctcttcctg ccactcctgg cgtatctcta tctcatcata gtcgccatca aaaacacttt
      421 gcgcggcttc accgctaagc ataggtaaac attcaccttc ttccccttcg tcggcaaaaa
      481 actcaacttg ccacatgatg tcgccgtcct gcaaaacgta tttttgggca ttgaactgtt
      541 gcacattcgc atcttcggcg tcgatgccgg ggttgtctgc aagaaattct tcgcgtgcag
      601 cgtcaatggc ttcttcaagc gttgcgtaca tggtcatcac gattctccct ttgagttgat
      661 gaggtttcag ggaaaaggat agctgattct ccgcttttgc aagtatgaaa ggcgaaaaat
      721 cagttcgata cctggggtat tcgacgacga cgtagactgt tccatgaata gactgcgttg
      781 aataacacta cgccagcggt gacgagaaat accgctctga aaccgtagtt cgctgaaatc
      841 gctgctccca tcaatggtcc ggtaacgttg ccaatatcac gaaacgattg gttatagctg
      901 aagatacgcc cggcgatctg gttgctcgag ttgtaaacca acaatgtctg tacggcgggg
      961 agtagtgcac catcggcggc accgagcaaa aaacgtaaaa tcccaagttg caatggcgtc
     1021 tgaacgtaag acattgggat caacagcagt acagaaaaga tcagcgctgt aatcaggatc
     1081 ttttcgggtc cgattcgatc gccaagtttg ccgagtcgtg gtgcacttag cagagccgcc
     1141 acgcctggca ccgaggcgat catgccactg ataaaggcga cgttactgac gttacccgcc
     1201 agttcgcgga catacagcgt cagaatgggg gcaattgagc ccgtcgccac ctggatgatt
     1261 aacgtagtga caaacaggct gagtaccagt ttcgggtttt taagtgatgt caccacttcc
     1321 cgcatgtgca gcatctcttt tttgctgacc ggctggaatt tttctctgat gcaaaacagg
     1381 gtgacgaaaa agcagagtat gagcacactg gtggtaataa agaataccgg acgtaagccg
     1441 tagctatcgg cgagcaggcc gccagccatt gggccgagca acgcaccacc aacgccgcct
     1501 gtggagagcg tacccagcgc ccagccgctt ttattacgcg gtacttgtgt ggcgataaga
     1561 gcattagcgt tggggacaaa tccgccaagt aacccaagaa gcgcccgcag gatcaaaaac
     1621 tgccagatat tttgtgccag ccccatcaac accatcacga tgcccatgcc gagggcagag
     1681 cgtaatagca tgagttttcg gcctttacgg tcggcgagtc caccccaaaa cggtgaggcg
     1741 atggccgaaa ataaaaatgt aatgctgaag acaataccgg accatattca gggcggagtg
     1801 accggtaacg ccaagctgct caacgtagag gggtaagaag ggcattacca gactgaaggc
     1861 ggcaccggta agaaaacagc ctagccaggc gacgatcagg tttcgtttcc agtttatagg
     1921 ggtgtcattt tcacagggtg acatagcaat ccgctgttgg tgcgccaggc gcggtgaaca
     1981 taagaagaaa agataagcac actaattatg cgcccgactt ccagggggcg caatccagag
     2041 agcttttatc gctaaatcag ggggatttgc tgtggtaatg ccggatgcca ttctgaagca
     2101 tccggcaggg gagatttaat agcgtgaagg aacgccttcc gggcgtgttt taaagcgacg
     2161 gtgtaaccac atatactgct ctggtgccat catgatgcat ttttcgacca ctttgttcat
     2221 ccacgcggcg gtagtttcgg catcatccag tggcggagaa cactctggcg gcagcataat
     2281 caattgatac cctttgccat ctggcttacg gcgtggaacg aagggcacca gacatgcgcc
     2341 ggacatccgt gccagcatcc aggttccggt cgtggtcgca gcctgctcaa cggcaaataa
     2401 cgggacgaaa acgcttgagc gcgggccgta atcatgatcc ggtgcgtacc agaccacttc
     2461 gccttttttc agggctttaa tcatgccttt taaatctttg cggtcgagca tcgatttatt
     2521 tgagcgcaaa cggccccagg tttgtagcca gtcaatcagt ggattatcgt tcgggcggta
     2581 aacgccaatc cccggttcct gcataccaaa ctgccgcgca cccagctcca gtgtcagaaa
     2641 atggatgcca actaacagga tgccgcgttt ttgcgcctgc acgtcacgaa tgtgttccat
     2701 gccgatcact tccgtccagc gcgcgattcg gcggtccggc cagaaccacg ccatgccggt
     2761 ttccatcagg cccatgccaa cggattcgaa attcttcacc accattttac ggcgttcttg
     2821 ttcgctcatt tccgggaagc acagttccag gttgcgatgc acaatttttg cgcgtcgttt
     2881 cataaaacgt aacgccagtt ttcctaatcc acaaccgagg cggtagataa ccgggtaggg
     2941 caattgcacg actaaccaaa gtacgccaat acccaaccag gttaaccaat aacgcggatg
     3001 aagcagtgcg gtggagaact tgggtagatt cgtcatatca atcctgtttt tcaacctatt
     3061 cgggcaattg tatgtattgt cgcatttttt cgcccgcaac caaaatttgt ggctgaagac
     3121 tgggcgaaat tgccgcgctt gtaaataaca aataattttt aatgcgcaaa tgtagcgtaa
     3181 aatgtgtgga tgttaattat cgataattgc tatatcatgc cgcggatttt tactttccca
     3241 tctcgcagga accgtacacc atgccagtgt tacacaaccg catttccaac gacgcgctaa
     3301 aagccaaaat gttggctgag agcgaaccgc gaaccaccat ttcgttttac aagtatttcc
     3361 acatcgccga tcctaaggcg acccgtgacg ctttatatca gctgtttacc gcgctgaatg
     3421 tttttgggcg agtgtatctg gcgcatgagg gcattaacgc gcaaatcagc gtacctgcga
     3481 gcaatgttga aacatttcgc gcgcagctct gccttcgacc cggctttaga gggtttacgc
     3541 ctgaatatcg cgttggatga tgacgggaaa tccttctggg tactgcgcat gaaggtacgt
     3601 gatcgcattg ttgccgacgg tattgacgat cctcactttg atgccagcaa tgttggtgag
     3661 tatctgcaag cggcggaagt gaacgccatg cttgacgatc ccgatgcact atttatcgac
     3721 atg
//
LOCUS       DAJVSY010000246         3685 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.248, whole genome shotgun sequence.
ACCESSION   DAJVSY010000246 DAJVSY010000000
VERSION     DAJVSY010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3685
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.248"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(279..566)
                     /locus_tag="OQQ19_004031"
     CDS             complement(279..566)
                     /locus_tag="OQQ19_004031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebO family protein"
                     /protein_id="HCS1805460.1"
                     /translation="MNEVVNSGVMNIASLVVSVVVLLIGLILWFFINRASSRTNEQIE
                     LLEALLDQQKRQNALLRRLCEANEPEKADKKTIESQKSVDDEDIIRLVAER"
     gene            complement(641..784)
                     /gene="mgrB"
                     /locus_tag="OQQ19_004032"
     CDS             complement(641..784)
                     /gene="mgrB"
                     /locus_tag="OQQ19_004032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoP/PhoQ regulator MgrB"
                     /protein_id="HCS1805461.1"
                     /translation="MKKFRWVVLVVVVLACLLLWAQVFNMMCDQDVQFFSGICAINQF
                     IPW"
     gene            943..1182
                     /locus_tag="OQQ19_004033"
     CDS             943..1182
                     /locus_tag="OQQ19_004033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805462.1"
                     /translation="MRFIIRTVMLIALVWIGLLLSGYGVLIGSKENAAGLGLQCTYLT
                     ARGTSTVQYLHTKSGFLGITDCPLLRKSNIVVDNG"
     gene            complement(1325..2116)
                     /gene="kdgR"
                     /locus_tag="OQQ19_004034"
     CDS             complement(1325..2116)
                     /gene="kdgR"
                     /locus_tag="OQQ19_004034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator KdgR"
                     /protein_id="HCS1805463.1"
                     /translation="MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMS
                     KSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMREISR
                     LTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEV
                     KQILEGVEYKRSTERTITSTEALLPVLDQVREQGYGEDNEEQEEGLRCIAVPVFDRFG
                     VVIAGLSISFPTLRFSEERLQEYVAMLHTAARKISAQMGYHDYPF"
     gene            2293..3666
                     /locus_tag="OQQ19_004035"
     CDS             2293..3666
                     /locus_tag="OQQ19_004035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1805464.1"
                     /translation="MPKVQADGLPLPQRYGAILTIVIGISMAVLDGAIANVALPTIAT
                     DLHATPASSIWVVNAYQIAIVISLLSFSFLGDMFGYRRIYKCGLVVFLLSSLFCALSD
                     SLQMLTLARVIQGFGGAALMSVNTALIRLIYPQRFLGRGMGINSFIVAVSSAAGPTIA
                     AAILSIASWKWLFLINVPLGIIALLLAMRFLPPNGSRASKPRFDLPSAVMNALTFGLL
                     ITALSGFAQGQSLTLIAAELVVMVVVGIFFIRRQLSLPVPLLPVDLLRIPLFSLSICT
                     SVCSFCAQMLAMVSLPFYLQTVLGRSEVETGLLLTPWPLATMVMAPLAGYLIERVHAG
                     LLGALGLFIMAAGLFSLVLLPASPADINIIWPMILCGAGFGLFQSPNNHTIITSAPRE
                     RSGGASGMLGTARLLGQSSGAALVALMLNQFGDNGTHVSLMAAAILAVIAACVSGLRI
                     TQPRSRA"
BASE COUNT          924 a          904 c          815 g         1042 t
ORIGIN      
        1 taaaataaga aaaattgatg aatgagcaaa aaaatcaaga gagaaacgtt tcgctaataa
       61 ataataccac gcttaatcac aaatccgatg taaacatcct aataaattaa tgaggaaaat
      121 atctttttct gatatcccgt tacgcaaata aataatatga taattatttg aagtcagacc
      181 agagttttaa tttgaagcag ttgcaccatg acagtgcgta taatcaggat gaattgagta
      241 acccttcaac gacggggtta ctcaagattg aggaaggatt atcgttcggc gaccaggcga
      301 ataatatctt cgtcatcaac cgatttttga ctctcaatgg tctttttatc tgctttctct
      361 ggttcgtttg cttcgcacaa acgacgtaaa agtgcatttt gacgtttttg ctgatccagc
      421 aacgcctcaa gcagttcaat ctgttcgtta gtccgtgaac tggcacgatt gataaaaaac
      481 cacaagatga gcccgataag aagaactacc accgatacaa ccaaagacgc aatgttcatc
      541 acgcctgaat ttacaacttc gttcatttca ccacctctga gtagaggcgc tattctacca
      601 ctgctggaga ggaagaaaat ctagtgctga aaaaatgata tcaccacggg ataaactggt
      661 taatggcaca aattccgctg aaaaattgta catcctgatc gcacatcatg ttgaatacct
      721 gcgcccaaag cagcaagcaa gccaacacca cgacaaccag aacgacccat cgaaactttt
      781 tcactccaat ctccgcttca cctaccttat gtcattaaac tagcatgcgt tagttaaaca
      841 gcgcctaact atgtcgatat tcgtgctttt tcggaatgag tagcttgctt cagcgcatat
      901 tgccgctacg attaagcgaa cataaaaaga gaagaggttg taatgcgatt catcattcgc
      961 acagttatgc tgatagcact ggtatggata ggattattac tcagcggata tggcgttttg
     1021 attggaagca aagagaatgc cgcaggatta ggtttgcaat gtacctatct gactgccaga
     1081 ggcaccagca cggtacaata cttgcacact aaaagtggtt tcttggggat aacagattgc
     1141 ccactgttac gtaaaagcaa tatcgtggtc gataatggtt aagggtaata aataaccaga
     1201 ttctcactca tgagtaaaat attcttatag caagcgcgtt taatataacg caccttcaac
     1261 tttatttttc tcatgctaaa taaagaacct gtctgtttga tattccgaca ggttcttact
     1321 ctcatcagaa cggatagtcg tgataaccca tttgggcaga aattttgcgc gctgcggtat
     1381 gcaacattgc gacatattcc tgtaaacgct cttcagagaa acgcaacgtc gggaaggaga
     1441 tgctcaaacc ggcaatgacc acgccaaagc gatcaaatac cggtaccgca atgcatcgca
     1501 gcccttcttc ctgctcttcg ttatcttcgc catacccctg ctcgcgcacc tggtccagaa
     1561 cgggtaataa cgcttctgta ctggtgatgg tccgctcggt actgcgttta tactccacgc
     1621 cctcaagaat ttgcttcact tcatcgcgat cgcgccatgc cagcagtacc ttaccaatcg
     1681 cggtgctgta cagcggatta cgacgcccaa tccgtgaata catgcgcaaa ttgtacatag
     1741 agtcaatttt gtgaatgtaa acaatactgt cttcgtccag tgcgccgagg tggatagttt
     1801 ctttggtcag gcgggagatc tcacgcatct ggatatctgc gctacgaatt aaatcgacgt
     1861 tttgtaacgc gcgagcgccc agttcaaaca atttcagggt cagggaatat ttctccgact
     1921 ccccttcctg cgccacataa cctaaggttt tcatggtctg taaaaagcga taaacggtgc
     1981 tttttgacat catgacgcgc tgcgacagct cggttatccc tatttcgcgc tcttcaccca
     2041 gcgcctgcaa aatgccaaaa acttttagca cggaagatac agaatcaggc tgtttatcca
     2101 gatctgcgtt agccatttat cacctcattg cgagtgtttt ataaaaatca gaactgtttt
     2161 ttattataat ttcgcaccag gggggtcgca atccatcttt tgccggttag ttacaattct
     2221 gcgacatcca ccgtgaatat cagtgctaga atcatacccc tgttgattat tcaccaaaga
     2281 tataaaattc ctatgccaaa agttcaggcc gacggcctgc cattgcccca gcgatacggt
     2341 gcgatattaa ccattgtgat tggtatttcg atggctgtcc ttgacggcgc aatcgccaac
     2401 gtcgccctgc caacaatcgc cacggacctt catgccacgc cagccagttc catctgggta
     2461 gtgaacgcct atcaaatcgc cattgtcatc tccctgctct cgttttcgtt tctgggcgat
     2521 atgtttggct atcgacgtat ttataaatgc ggtctggtcg tttttctgtt gtcttcactg
     2581 ttctgcgccc tttctgattc gctgcaaatg ctcacccttg cgcgtgtcat acaaggtttc
     2641 ggcggtgcag cgttgatgag cgttaatacc gcacttatcc gcctgatcta tccacaacgt
     2701 tttctgggga gagggatggg cataaactcg tttattgttg ccgtctcttc tgctgccggg
     2761 ccgacaattg ctgcagcaat cctctccatc gcatcctgga aatggttatt tttaatcaac
     2821 gtaccgttag gtattatcgc cctgcttctg gcgatgcgtt ttctgccacc caatggttct
     2881 cgcgccagta aaccccgttt cgacctgccc agcgccgtga tgaacgcgtt aaccttcggc
     2941 ctgcttatca ctgcgttgag tggtttcgct caggggcaat cgctgacgtt aattgctgcg
     3001 gaactggtgg taatggttgt tgttggtatt ttctttattc gccgccagct ttctcttccc
     3061 gtaccgctgc taccggtgga tttactgcgt atcccgctgt tttcactttc tatttgcaca
     3121 tctgtttgct ctttctgcgc acaaatgctg gcaatggttt ccctgccctt ttacctgcaa
     3181 accgtgctcg ggcgtagtga agtcgaaaca ggtttacttc tgacaccgtg gccgttagca
     3241 acgatggtga tggctccgtt ggcaggctat ttgattgaac gcgtacatgc aggattgctg
     3301 ggtgctctag ggttgttcat catggctgcg gggctttttt ccctggttct gctgcccgcg
     3361 tcacctgcgg atatcaatat tatctggccg atgatcttat gtggcgctgg atttggcttg
     3421 ttccagtcac ccaataacca caccattatt acctccgctc ctcgcgaacg tagcggtgga
     3481 gccagtggca tgttaggaac ggctcgtcta ctgggtcaga gtagcggcgc ggcactggtg
     3541 gcgctgatgc taaatcagtt cggtgataat ggtacgcacg tttcgctgat ggctgcggct
     3601 attctggcag tgattgctgc ctgtgtcagt ggtttacgta tcactcagcc acgatccagg
     3661 gcataaaaaa agcgcgtcga tcagg
//
LOCUS       DAJVSY010000247         3678 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.249, whole genome shotgun sequence.
ACCESSION   DAJVSY010000247 DAJVSY010000000
VERSION     DAJVSY010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3678
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.249"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(168..482)
                     /gene="fliE"
                     /locus_tag="OQQ19_004036"
     CDS             complement(168..482)
                     /gene="fliE"
                     /locus_tag="OQQ19_004036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HCS1805465.1"
                     /translation="MSAIQGIEGVISQLQATAMSARAQDSLPQPTISFAGQLHAALDR
                     ISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSM
                     QV"
     gene            697..2355
                     /gene="fliF"
                     /locus_tag="OQQ19_004037"
     CDS             697..2355
                     /gene="fliF"
                     /locus_tag="OQQ19_004037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HCS1805466.1"
                     /translation="MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAK
                     APDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL
                     PKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS
                     LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLT
                     LSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTE
                     EQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNN
                     RQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK
                     PLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSSDESGGELPFWQQQAFIDQ
                     LLAAGRWLLVLLVAWLLWRKAVRPQLTSRAEAMKAVQQQAQAREEVEDAVEVRLSKDE
                     QLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWINNDHE"
     gene            2348..3343
                     /gene="fliG"
                     /locus_tag="OQQ19_004038"
     CDS             2348..3343
                     /gene="fliG"
                     /locus_tag="OQQ19_004038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HCS1805467.1"
                     /translation="MSNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANV
                     TQISNKQLTDVLAEFEQEAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRD
                     TASGIETLNFMEPQSAADLIRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLR
                     IATFGGVQPAALAELTEVLNGLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAV
                     REFDGELAQKIIDEMFLFENLVDVDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLR
                     NMSQRAADILRDDLANRGPVRLSQVENEQKAILLIVRRLAETGEMVIGSGEDTYV"
     gene            3336..>3678
                     /gene="fliH"
                     /locus_tag="OQQ19_004039"
     CDS             3336..>3678
                     /gene="fliH"
                     /locus_tag="OQQ19_004039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416450.2"
                     /note="binds to and inhibits the function of flagella
                     specific ATPase FliI; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HCS1805468.1"
                     /translation="MSDNLPWKTWTPDDLAPPQAEFVPMVEPEETIIEEAEPSLEQQL
                     AQLQMQAHEQGYQAGIAEGRQQGHEQGYQEGLAQGLEQGLAKAKSQQAPIHARMQQLV
                     SEFQTTLDALDS"
BASE COUNT          925 a          967 c         1029 g          757 t
ORIGIN      
        1 cttcctatga gcaaagcgaa gacaaaacat gttatcgcgt ttacggatcg tggatggcag
       61 aaaactttca ggatcaggta tccattttaa accagaaata gggtgagttt gtcccatcca
      121 tgccccacgc gggcagatgg gatgtaatta ccaacaggtt acaaaaccta cacctgcatg
      181 gacatcactt cctgatacgc cgccaccagc ttattacgca cctgaatccc catttgcata
      241 gaaactgagg ctttttgcat atcggtcatc acatcgttta acgccacgcc gggttcaccg
      301 agggtgaatt tttctgcctg cgtgcgggcg gctgtttgtg tatcgcttat gcgatcgagc
      361 gcggcgtgca gctgcccggc aaaactaatg gtcggttgcg gcagtgaatc ctgcgcacgc
      421 gcactcatcg ccgtagcctg taactggctg ataacccctt caatcccctg tatcgctgac
      481 attttcgtct cctggataat ttctggtagc aaagcctacc agtaagtcaa taagacaaag
      541 gcgctaaata gcaacaaaaa aacgggttta ttggcggata gaaaaaaacg aaagcacaaa
      601 taatggcagc gtcaattttt cgagtttgct gacccgggag tgagtcttgt tccactttgc
      661 caataacgcc gtccataatc agccacgagg tgcgcgatga atgcgactgc agcccagaca
      721 aaatctcttg agtggcttaa tcgcctgcgt gcgaatccga aaattccatt gattgttgcc
      781 ggttccgcgg cagtggcggt catggtcgca ctgatcctgt gggcgaaagc ccccgactac
      841 cgcacattat tcagcaatct ttccgatcag gatggtggcg caattgtcag ccaactgacg
      901 caaatgaata ttccttaccg cttcagcgaa gccagcggcg ctattgaagt tccggcagat
      961 aaagttcacg agctgcgtct gcgcctggcg caacaaggtt tgcccaaagg cggcgcggtc
     1021 ggtttcgaac tactcgatca ggaaaagttt ggtatcagcc agttcagcga acaggtgaat
     1081 tatcagcggg cgctggaagg cgagctttct cgtaccatcg aaactatcgg cccggtaaaa
     1141 ggggcgcgcg tacatctggc aatgccgaaa ccgtctttat tcgtccgtga acaaaaatcc
     1201 ccttctgcat cggtgacggt aaatctatta cccggccgcg cactcgatga agggcaaatt
     1261 agcgccattg tacatctggt ttccagcgcg gttgctggtc tgccgccggg gaacgtcacg
     1321 ctggtggatc agggtggaca tctgttaacc ctgtccaata ccagcgggcg cgatcttaat
     1381 gacgctcagt tgaaatatgc cagcgatgtc gaaggccgga ttcagcggcg tattgaagcg
     1441 atcctgtcgc caattgttgg taacggtaat attcacgccc aggtcacggc gcaactggac
     1501 ttcgccagta aagaacaaac ggaagaacag tatcgcccta acggtgatga atctcatgcg
     1561 gcgcttcgtt cacgccagct taatgagagc gagcaaagcg gttccggtta tccgggcggc
     1621 gtaccggggg cgttgtcgaa tcaaccggca cctgcgaata acgcgccaat cagcacgcct
     1681 ccggcaaatc aaaataaccg ccagcagcag gcgagcacca ccagcaatag cgggccgcgt
     1741 agcacacagc ggaatgaaac cagtaactac gaagtcgatc gcaccattcg tcataccaaa
     1801 atgaacgtgg gcgatgtgca acgtctgtca gtcgcggtag tggtaaatta caaaaccttg
     1861 ccagacggta aaccattgcc tctcagcaac gaacagatga agcaaattga agatctgacc
     1921 cgcgaggcga tgggcttttc tgaaaaacgc ggtgactcgc tcaatgtcgt taactcgccg
     1981 ttcaatagca gtgacgaaag cggcggagaa ctgccgttct ggcaacagca agcgtttatc
     2041 gatcagttgc tggctgccgg tcgctggttg ctggtactgc tggtggcgtg gctgctgtgg
     2101 cggaaagcgg tacgcccgca gttaacaagt cgcgccgagg cgatgaaagc tgtacagcaa
     2161 caggcgcagg cccgtgagga agtggaagat gcggtggaag tccgcctgag caaagacgaa
     2221 caactccaac aacgacgcgc taaccaacgt ctgggggcag aagtcatgag ccagcgtatc
     2281 cgtgaaatgt ctgataacga tccgcgcgtg gtggcgctgg tcattcgcca gtggataaat
     2341 aacgatcatg agtaacctga caggcaccga taaaagcgtc atcctgctga tgaccattgg
     2401 cgaagaccgg gcggcagagg tgttcaagca cctctcccag cgcgaagtgc aaaccctgag
     2461 cgctgcaatg gcgaacgtca cgcagatctc caacaagcag ctaaccgatg tgctggcgga
     2521 gtttgagcaa gaagctgaac agtttgccgc actgaatatc aacgccaacg attatctgcg
     2581 ttcggtattg gtcaaagctc tgggtgagga acgtgccgcc agcctgctgg aagatattct
     2641 cgaaactcgc gataccgcca gcggtattga aacgctcaac tttatggagc cgcagagtgc
     2701 cgccgatctg attcgcgatg agcatccgca aattatcgcc accattctgg tgcatctgaa
     2761 gcgcgcccag gccgccgata ttctggcgtt gttcgatgaa cgtctgcgcc acgacgtgat
     2821 gttgcgtatc gccacctttg gcggcgtgca gccagccgcg ctggcggaac tgaccgaagt
     2881 actgaatggc ttgctcgacg gtcagaatct caagcgcagc aaaatgggcg gcgtgagaac
     2941 ggcagccgaa attatcaacc tgatgaaaac tcagcaggaa gaagccgtta ttaccgccgt
     3001 gcgcgaattc gacggcgagc tggcgcaaaa aattatcgac gagatgttcc tgttcgaaaa
     3061 tctggtggat gtcgacgatc gcagcattca gcgtctgttg caggaagtgg attccgaatc
     3121 gctgttgatc gcgctgaaag gggccgagca gccactgcgc gagaaattcc tgcgcaatat
     3181 gtcgcagcgt gccgccgata ttctgcgcga cgatctcgcc aaccgtggtc cggtgcgtct
     3241 gtcgcaggtg gaaaacgaac agaaagcgat tctgctgatt gtgcgccgcc ttgccgaaac
     3301 tggcgagatg gtaattggca gcggcgagga tacctatgtc tgataatctg ccgtggaaaa
     3361 cctggacgcc ggacgatctc gcgccaccac aggcagagtt tgtgcccatg gtcgagccgg
     3421 aagaaaccat cattgaagag gccgaaccca gccttgagca gcaactggcg caactgcaaa
     3481 tgcaggccca tgagcaaggt tatcaggcgg ggattgccga aggtcgccag caaggtcatg
     3541 agcagggcta tcaggaagga ctggcccagg ggctggagca aggtctggca aaggcgaagt
     3601 ctcaacaagc gccaattcat gcccggatgc agcaactggt cagcgaattt caaactaccc
     3661 ttgatgcgct tgatagtg
//
LOCUS       DAJVSY010000248         3677 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.250, whole genome shotgun sequence.
ACCESSION   DAJVSY010000248 DAJVSY010000000
VERSION     DAJVSY010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3677
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.250"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(51..176)
                     /locus_tag="OQQ19_004040"
                     /pseudo
     CDS             complement(51..176)
                     /locus_tag="OQQ19_004040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415772.1"
                     /note="receptor for colicin S4; incomplete; partial in the
                     middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein OmpW"
     gene            complement(481..651)
                     /locus_tag="OQQ19_004041"
     CDS             complement(481..651)
                     /locus_tag="OQQ19_004041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001710241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805469.1"
                     /translation="MVRLPPVVMSAKSATARTTIAREDAEDHQVKLSAQKLEELLASM
                     VKDEVDRNDGIY"
     gene            complement(766..1034)
                     /locus_tag="OQQ19_004042"
                     /pseudo
     CDS             complement(766..1034)
                     /locus_tag="OQQ19_004042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000937495.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
     gene            1091..1759
                     /locus_tag="OQQ19_004043"
     CDS             1091..1759
                     /locus_tag="OQQ19_004043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HCS1805470.1"
                     /translation="MVKSMKKNTDDGAKIYTPLTLKLYDWWVLGVSNRLAWGCPTKEH
                     LLPHYLEHVGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHK
                     ISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATI
                     LGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSA
                     SGKK"
     gene            complement(1814..2398)
                     /locus_tag="OQQ19_004044"
     CDS             complement(1814..2398)
                     /locus_tag="OQQ19_004044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000885581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1805471.1"
                     /translation="MAFRMSEQARTIKIYNLLAGTNEFIGEGDAYIPPHTGLPANSTD
                     IAPPDIPAGFVAVFNSDEASWHLVEDHRGKTVYDVASGDELFISELGPLPENVTWLSP
                     EGEFQKWNGTAWVKDTEAEKMFRIREAEETKNNLMQVASEHIAPLQDAADLEIATEEE
                     TSLLEAWKKYRVLLNRVDTSTAPDIEWPTNPVRE"
     gene            complement(2398..3645)
                     /locus_tag="OQQ19_004045"
                     /pseudo
     CDS             complement(2398..3645)
                     /locus_tag="OQQ19_004045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001601124.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
BASE COUNT          970 a          902 c          786 g         1019 t
ORIGIN      
        1 tgccatgtcc ttattgaccc cgtatattac ggggtcgttt ttgtgcggaa ttaaaaacga
       61 tatcctgctg agaacataaa cacccacgga tcgaggcgta cgctatcatg ttgctgtgca
      121 ccgcccagct tataattggc ggtggtatcg atatccatgt accagactgg taggtttcaa
      181 aaaacacaat aaccaattgt atttgaagca aaaaacaaga ctttgagatg ttttttttgt
      241 accttttttt atgtttttaa ctgtctgatt ttattgaaat cttttttagt tttgcagaag
      301 gaatttttta cttgattgta actttttcgt ttttttgggg gctaattgac gcgcaatgct
      361 gggcggggag cgcacagcca aaaaaaccga aattgaccgc taattactgc caatcatcat
      421 cgctctgatt gagcgtaaat cattcaggtt attcagttct tccttctgct ctcgctgacg
      481 tcaataaatc ccatcattgc gatcaacctc atccttaacc attgatgcga gcagttcttc
      541 cagtttctgc gctgacagct ttacctggtg atcttcagca tcttcccggg ctattgtggt
      601 tcgcgcagtg gctgattttg ctgacatcac cacagggggc agacggacca ttgaaccatg
      661 gcctccggaa caaataaggg caaaaataac aaccactatc gaaagcttac aaactaaccg
      721 cagcacgttc ctgcatacga cgtgtctgcg gcataatccc aatgattact ccctgacagg
      781 atttgcaggc cactcaatat cggtgcagtt gatgtatcaa cacgattcaa caatacccga
      841 tatttattcc atgcctccag caacgatctt tcttcctccg ttgcgatttc cagatctaca
      901 gcatcctgca gtggcgcaat atactcactg aattcctgga tgtagaactg tgtggtgacg
      961 gtcttccagc cattcgtctc ctgctgtatc gaagcatacc aggctatttc aatatcgcta
     1021 tgctgcggca gcatttaacc ccttgtaatt catcgccata attgatttaa ttcacaaata
     1081 aaactataac atggtgaaat caatgaaaaa aaacacagat gatggggcta aaatttacac
     1141 accacttacc ctaaagcttt atgactggtg ggttttggga gtatcaaatc ggcttgcatg
     1201 gggatgtcct acaaaggaac accttcttcc acactatctg gaacatgtag gtaacaacca
     1261 tctggatatt ggtgttggaa ctgggtttta ccttactcac gtacctgaga gtagtctgat
     1321 atctttaatg gatttgaacg aagctagcct gaacgcggca tctacaaggg ctggggaatc
     1381 aaaaattaaa cataaaatta gccatgatgt ttttgaacct tatcccgcgg cgttacatgg
     1441 tcaatttgat tccatttcca tgttttacct tcttcactgc ctgcctggaa atatatctac
     1501 aaaaagctgt gtaatacgca atgcggcgca ggccttaact gacgatggaa ctctatacgg
     1561 agccacaatt cttggcgatg gagttgtgca caatagcttc ggtcaaaaac tgatgcgcat
     1621 ttacaatcag aaaggcatct tttcaaacac aaaagattcc gaagaaggct taacacatat
     1681 actctcagag catttcgaga atgttaaaac caaggttcaa ggtactgtag taatgttttc
     1741 cgcttcaggg aaaaaatagc atccaaccgc agcacgttct tgcttaagac gtgctgcggc
     1801 ataatcccaa tgattactcc ctgacagggt tcgtaggcca ctcaatatca ggtgcagttg
     1861 atgtatcaac acggttcagc aacacccgat actttttcca ggcttccagc aatgaggttt
     1921 cttcctccgt tgcaatttcc agatctgcag catcctgaag cggcgcaata tgctcactgg
     1981 ctacctgcat caggttgttt tttgtttctt ccgcctcccg gatccggaac attttttctg
     2041 cttccgtatc cttcacccag gctgtgccgt tccacttctg aaactcccct tccggcgata
     2101 accaggtaac attttccggt aacggaccga gttcagaaat aaataactcg tcccctgacg
     2161 ctacgtcata aaccgtttta ccccgatggt cttcaacgag atgccacgat gcctcatcac
     2221 tgttgaaaac agccacaaag ccagcaggaa tatctggtgg tgcaatatcg gtactgtttg
     2281 ctggcagacc tgtatgaggc ggaatatatg cgtcaccttc accaataaat tcattagttc
     2341 cggccagcag attataaatt tttatggtcc gtgcttgttc actcattctg aatgccatta
     2401 tgcaagcctc acaatatagt taaatgcgat gtttttgacg gtgttttccg cgttaccagc
     2461 agcgttaacg gtgatggtgt gtccatgtga accaatcgca acggagtgcg tatgcgcacc
     2521 aatacctaca gtatgtgcat gtgcgccaga acttgctgca gtaccagaca gcgagtgggt
     2581 atgagcacct gctgactgtg tctgaatacg ttgataatac gatctacggg aagaagtccc
     2641 cgggcttact tgatactgtg aatcctggac ataagtgaac ccaccgccat cataaaatgc
     2701 taacgcagaa ccgccgcctc ctggtcaacg aataccatta ccatgagtat gatcaccggc
     2761 agaccccgta gagccactca gactgtgcgt atgcgccccg gtgttattcg tggatttggt
     2821 tccgtaatca aacgacgatg tgtttttcgt ccccaaatcc gtactggatg cgctggcgct
     2881 gtgggtgtgc gatttaatgc cgtcctgttc ctgagacaat acggcacgac cactggcggg
     2941 tttgccctta atcgtccagc cacgcatatc agggatcacg cctgacggat aagcggctgc
     3001 aagtttcggg tatgcagatt tgtcaaaagt ctgcccctgc atcagggcat agccagacgg
     3061 aacggtatct gatggccacg ggattggtgc gccaggcgga taaaactgct ctgatggcgt
     3121 atagagtgaa taaactgtac cgtccgttaa cccttccggc ttattagcag aatatgctgg
     3181 tgacgtatga atcgtcacgc tggcattact ggtataatcc cattgaatat ttacaccagt
     3241 cgcataattt ccgattgcaa cgtaaatatc gtaagtatca ccagatgtat tgacccaggc
     3301 aaaatttgta aaccctgtcg atgtgcgctg ccataaagca ccagtaatcc ccttcggatt
     3361 accattacct gcacgcaaaa caagttcaga tatacctgcc tgttgaggtg accccacgtt
     3421 aaatcccgca ccaccaatca acgtaattga aacaacagaa ctcgcctgtg gcatggttac
     3481 cgttgctaat ttgaaccaac cagcaccacc gctgaatgac attgttgttg agttaagcgt
     3541 accaatatct ttcggcgtca gtgttatatc cgctgaaagc gccttaccat tcaccttacg
     3601 ggcagaaggt acccgaccat tcgcattatc attagctgct ttcactgctt tcggtgtcgc
     3661 ggcaagcgtt tcagatg
//
LOCUS       DAJVSY010000249         3625 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.251, whole genome shotgun sequence.
ACCESSION   DAJVSY010000249 DAJVSY010000000
VERSION     DAJVSY010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3625
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.251"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(296..991)
                     /locus_tag="OQQ19_004046"
     CDS             complement(296..991)
                     /locus_tag="OQQ19_004046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414842.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HCS1805472.1"
                     /translation="MDNRGEFLNNVAQALGRPLRLEPQAEDAPLNNYANERLTQLNQQ
                     QRCDAFIQFASDVMLTRCELTSEAKAAEAAIRLCKELGDQSVVISGDTRLEELGISER
                     LQQECNAVVWDPAKGAENISQAEQAKVGVVYAEYGLTESGGVVLFSAAERGRSLSLLP
                     ESSLFILRKSTILPRVAQLAEKLHQKAQAGERMPSCINIISGPSSTADIELIKVVGVH
                     GPVKAVYLIIEDC"
     gene            complement(984..2411)
                     /locus_tag="OQQ19_004047"
     CDS             complement(984..2411)
                     /locus_tag="OQQ19_004047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HCS1805473.1"
                     /translation="MSIKTSNTDFKTRIRQQIEDPIMRKAVANAQQRIGANRQKMVDE
                     LGHWEEWRDRAAQIRDHVLSNLDAYLYQLSEKVTQNGGHVWFAKNKEDATRYILQVAQ
                     RKNARKVVKSKSMVTEEIGVNHVLQDAGIQVIETDLGEYILQLDQDPPSHVVVPAIHK
                     DRHQIRRVLHERLGYEGPETPEAMTLFIRQKIREDFLSAEIGITGCNFAVAETGSVCL
                     VTNEGNARMCTTLPKTHIAVMGMERIAPTFAEVDVLITMLARSAVGARLTGYNTWLTG
                     PREAGHVDGPEEFHLVIVDNGRSEVLASEFRDVLRCIRCGACMNTCPAYRHIGGHGYG
                     SIYPGPIGAVISPLLGGYKDFKDLPYACSLCTACDSVCPVRIPLSKLILRHRRVMAEK
                     GITAKAEQRAIKMFAYANSHPGLWKVGMMAGAHAASWFINGGKTPLKFGAISDWMEAR
                     DLPEADGESFRSWFKKHQAQEKKNG"
     gene            complement(2422..3141)
                     /locus_tag="OQQ19_004048"
     CDS             complement(2422..3141)
                     /locus_tag="OQQ19_004048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HCS1805474.1"
                     /translation="MNVNFFVTCIGDALKSRMARDSVLLLEKLGCRVNFPEKQGCCGQ
                     PAINSGYIKEAIPGMKNLIAALEDNDDPIISPAGSCTYAVKSYPTYLADEPEWASRAE
                     KVAARMQDLTSFIVNKLGVVDVGASLQGRAVYHPSCSLARKLGVKDEPLTLLKNVRGL
                     ELLTFAEQDTCCGFGGTFSVKMAEISGEMVKEKVGHLMEVRPEYLIGADVSCLLNISG
                     RLQREGQKVKVMHIAEVLMSR"
BASE COUNT          912 a          987 c          761 g          965 t
ORIGIN      
        1 tttgccttgt caaaaaaatg gtagatgaat accaacaaaa ctctgggcag taataaacaa
       61 cattctgata gagagtgcct gtataaagct gaagtgacaa tgaccgggaa gggaacccgt
      121 tttcaggaat ggatgcctgt ctttttcact gtaaatatcc tggcattact aatgccagga
      181 tatttacaga agagcagcat aaccatgacg gaacggggtt aagtcaggtt gtccttaacg
      241 ctattttcaa cctcgtatgc cttcttcagg tttatgttca gatctcatat ctctctcagc
      301 aatcctcaat aatcagatac accgctttca ccgggccatg aaccccgacg actttgataa
      361 gctcaatatc cgccgttgaa ctagggccgc taatgatgtt aatgcaggac ggcattcgtt
      421 caccggcctg cgctttctga tgcaattttt ctgcgagttg cgctacacgc ggcaggattg
      481 tgcttttacg caggataaaa agagaagatt ccgggagcag gctcaatgaa cgcccgcgct
      541 cggcggcgga aaaaagaacc acgcctcccg attcggttaa accatattca gcatacacaa
      601 cacccacttt agcctgctct gcctgcgaga tattctcggc acctttcgcc ggatcccaaa
      661 caacggcatt gcattcctgc tgcaaacgtt cactaatccc caattcctcc agcctcgtgt
      721 caccgctaat cacgaccgac tgatctccca gctctttaca cagacgtatt gcagcttctg
      781 ccgccttcgc ctcgctggtc agctcacagc gcgtcaacat aacatcgctg gcaaactgaa
      841 taaacgcgtc acagcgctgc tgttggttaa gttgggtaag ccgctcgtta gcatagttgt
      901 taagcggcgc atcttctgct tgcggttcaa gtcgcagcgg gcgacccagt gcctgagcaa
      961 cgttattcaa aaattcgcct cgattatcca ttctttttct cctgcgcctg atgtttctta
     1021 aaccaactac ggaaactctc tccgtcagct tcaggaagat cgcgtgcttc catccagtcg
     1081 ctaatcgcgc caaatttgag tggtgttttg ccgccattga taaaccagct tgccgcatga
     1141 gcgccggcca tcatcccgac tttccacaat cctggatgac tattggcata agcgaacatt
     1201 tttatcgccc gttgctctgc ttttgcggtg atcccttttt cagccatcac ccgacgatga
     1261 cgcaaaatca gttttgacag cggaatacgc accggacaca cgctgtcaca agcagtgcat
     1321 aaagagcagg cgtagggtaa atctttaaaa tctttatagc cgccaagtag cggagaaatc
     1381 accgcaccaa ttggccctgg ataaatagag ccatatccat gaccgccaat atggcgatat
     1441 gccggacaag tattcataca agccccgcag cgaatacagc gcagcacatc ccgaaattca
     1501 gaggccagca cctcagaacg cccgttatcg acaataacca gatgaaactc ttcaggacca
     1561 tcaacgtgcc ccgcttcgcg cggtcctgtc agccaggtgt tgtatcccgt caaacgtgca
     1621 ccaacggcac tgcgcgccag catggtgatc aatacatcta cctcggcaaa cgtgggggca
     1681 atacgctcca ttcccatcac tgcaatatgc gttttaggca gcgtggtaca cattcgcgca
     1741 ttaccttcat tggtcaccag gcataccgaa cctgtctctg ccaccgcgaa attacagccg
     1801 gtaataccta tttcagcact gaggaaatct tcgcggattt tttgccggat gaataaggtc
     1861 atcgcttcag gcgtttccgg cccctcatag cccagacgtt cgtgtagcac tcgacggatc
     1921 tgatggcgat ctttatgaat tgccgggacc acaacatgag atggcggatc ttgatccagc
     1981 tggagaatat attcacccag atcggtttca atcacctgaa tgccagcatc ctgcaacaca
     2041 tgattgacac caatctcttc ggtcaccatc gatttagatt tcaccacctt ccgggcattt
     2101 ttgcgttggg caacctgtaa aatgtagcgg gtagcgtctt ctttgttttt tgcaaaccag
     2161 acgtgaccgc cgttttgcgt cactttttct gagagctggt acagataagc gtcgagatta
     2221 ctcagaacat gatcacgtat ctgggcggcc cgatcgcgcc actcctccca gtgccccaat
     2281 tcatcgacca ttttttgccg atttgcccca atacgctgct gcgcgtttgc caccgctttg
     2341 cgcatgatcg gatcttcaat ttgctgacgg atgcgagtct taaaatctgt attactggtt
     2401 ttgatcgaca tctttatatc ctcagcggct catcaacact tcagcaatat gcatcacttt
     2461 gactttctgc ccttcccgtt gtaatcgccc actgatgttc agcaggcaac tcacgtcagc
     2521 accaattaaa tactcagggc ggacttccat caggtgccca accttttctt tcaccatctc
     2581 gccggatatt tcggccattt tgaccgagaa cgtgccgcca aatccgcagc aggtatcctg
     2641 ttcagcaaag gtcaacagct ccagtccacg cacatttttc agcagcgtaa gtggctcgtc
     2701 cttcactccc agcttacggg ccaggctaca agatgggtga tacacagctc tcccttgcaa
     2761 actggcacct acatcgacta cccctaattt attaacaata aaagaggtga gatcctgcat
     2821 acgcgcggca accttttcgg cacgtgatgc ccattcaggt tcatccgcca gatacgtcgg
     2881 gtaacttttt acggcatagg tgcaagagcc agccggtgaa ataatgggat cgtcgttatc
     2941 ctccagtgcg gcgatcagat ttttcatccc tggaatcgct tctttgatat aaccgctatt
     3001 gatcgcaggc tgaccgcagc atccctgttt ctccgggaaa tttacgcgac agccgagttt
     3061 ttccagtagc agcacggagt ctcgtgccat tcttgatttc agggcgtcac caatacaggt
     3121 gacaaagaaa ttgacattca caactaatac tccattactt catgcccatt tatgcccgat
     3181 gtttcccccc caccggggga tcaatcatca ataaatatgg cgttcttttt taattggcta
     3241 gcaacatact acccctcatt tgtatgacaa atgataatct ttcacccaaa cgtcaaatgc
     3301 aataactaat tttatttctt tcggcatcgc tcacatttta tggagaaatc gacgatcatt
     3361 tttggcataa gaaatccatt taaaaatggc cacatccctt atacctattc agagctactt
     3421 attcaggggt tattgagata tacactgatg gtgtacaaac aaaatcaccg acaataatca
     3481 cgtatcaagt aatagtcggg attttattta attgaagcaa tttagtttgt atctttggta
     3541 atgctgccaa cttactgatt tagtgtatga tggtgatttt aaggtgcttg cgtggcttcc
     3601 atttccatca gatgtccttc ctgct
//
LOCUS       DAJVSY010000250         3602 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.252, whole genome shotgun sequence.
ACCESSION   DAJVSY010000250 DAJVSY010000000
VERSION     DAJVSY010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3602
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.252"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..372
                     /locus_tag="OQQ19_004049"
     CDS             <1..372
                     /locus_tag="OQQ19_004049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000874423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805475.1"
                     /translation="WRIAEWPGEGGEGHLSSFFVQTDKASINVAYHHTVNQQKELGTF
                     GAFDHDWHTLAFKFKGSNSINVTPVLDGVDGQAFDLVKWANTANGLNRFVITDITGSA
                     ETYPVLIDTVEVKANKAGAAA"
     gene            512..694
                     /locus_tag="OQQ19_004050"
     CDS             512..694
                     /locus_tag="OQQ19_004050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001304601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1378 family protein"
                     /protein_id="HCS1805476.1"
                     /translation="MTFIHQVMLYFCTAVCVLYLLSGGYRAVRDFWCRQIDKRAAEKI
                     SASQSAGSKPEEPVTP"
     gene            618..965
                     /locus_tag="OQQ19_004051"
     CDS             618..965
                     /locus_tag="OQQ19_004051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001427342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF826 domain-containing protein"
                     /protein_id="HCS1805477.1"
                     /translation="MIKGPLRKSAPVSQPEANPKNPLLLNNPFQRENPMSEITSLVTA
                     EAVKEVLRSEEVRSALKQKLRQNLESRLDAEVDAILDELLGVAAVPEPEGIAGDGSAS
                     DGGEPTPDSDMMM"
     gene            1042..1257
                     /locus_tag="OQQ19_004052"
     CDS             1042..1257
                     /locus_tag="OQQ19_004052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II holin family protein"
                     /protein_id="HCS1805478.1"
                     /translation="MYQMEKITTGVSYTTSAVGTGYWFLQLLDRFSPSQWAAIGVLGS
                     LLFGLLTYLTNLYFKIREDRRKAARGE"
     gene            1262..1606
                     /locus_tag="OQQ19_004053"
     CDS             1262..1606
                     /locus_tag="OQQ19_004053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdfR family protein"
                     /protein_id="HCS1805479.1"
                     /translation="MKKKYELVVKGINNYPNKITVTVALEIGGYPSLLLPDVAISLDR
                     TEDATLEFYEAEAKKQAKQFFMDVAAGLCEGDGPLPEKRPVILEAQDVLITYRGKLPG
                     IITGSLKTPPLA"
     gene            1657..2190
                     /locus_tag="OQQ19_004054"
     CDS             1657..2190
                     /locus_tag="OQQ19_004054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HCS1805480.1"
                     /translation="MNTKIKYGLSAAVLALIAAGAPAPEILDQFLDEKEGNHTTAYRD
                     GAGIWTICRGAILVDSKPVVPGMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQK
                     AGIASFCPYNIGPGKCFPSTFYRRINAGDRRGACEAIRWWIKDGGRDCRIRSNNCYGQ
                     VSRRDQESALACWDIDR"
     gene            2346..2528
                     /locus_tag="OQQ19_004055"
     CDS             2346..2528
                     /locus_tag="OQQ19_004055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310767.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805481.1"
                     /translation="MAKYKRILLRLTMKNGLELKAPVTDDISRALAFAIKWVAVGVAV
                     SPMLYGLAKLVIALKS"
     gene            2855..3007
                     /locus_tag="OQQ19_004056"
     CDS             2855..3007
                     /locus_tag="OQQ19_004056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001228697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rz1 family lipoprotein"
                     /protein_id="HCS1805482.1"
                     /translation="MLPLVVSACGSTPPAPVPCVKPPAPPEWIMQPAPDWQTPLNGII
                     SPSESG"
     gene            3093..3317
                     /locus_tag="OQQ19_004057"
     CDS             3093..3317
                     /locus_tag="OQQ19_004057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805483.1"
                     /translation="MKKLLVTVKPFQGTIPFRILQRGRVLVEGSFSGKCTQLHSRTFQ
                     VNATNEELTVECTMNAAKCRMVSAALQPVC"
BASE COUNT          926 a          789 c         1023 g          864 t
ORIGIN      
        1 tggcgaatag cggaatggcc gggtgagggt ggtgaaggcc atctgagttc tttctttgtc
       61 cagacagata aagccagtat taatgttgca taccatcata cagttaatca acaaaaagaa
      121 cttggcacgt ttggcgcatt cgaccatgac tggcatacgc ttgcatttaa atttaagggc
      181 agtaacagca ttaatgttac tccggtgctt gatggtgtgg atggacaggc gtttgacctg
      241 gtgaaatggg ccaatactgc taatggactc aacaggtttg tcattacgga tattacaggt
      301 agtgcagaaa cctaccctgt acttattgat acggtggaag ttaaagcaaa caaagctgga
      361 gcagccgcat aattgctaaa aaaagccgcc agcggcagga atggaagctg gcggaggtaa
      421 tcccaatgga gaatgtaaag aaaagatgct ttcgtacatt ggttttttaa atgaaaacaa
      481 ttctcattgt caaccataac ggtaagaaat tatgacattt attcatcagg tgatgctgta
      541 cttctgtacg gcggtctgtg tgctgtatct tctttcgggt gggtacaggg ctgtgcgcga
      601 tttctggtgc aggcagattg ataaaagggc cgctgagaaa atcagcgcca gtcagtcagc
      661 cggaagcaaa cccgaagaac ccgttactcc ttaacaaccc ctttcagcga gaaaatccca
      721 tgtcagaaat cacatccctg gtcactgcag aggcagtgaa ggaagtcctg cgctctgaag
      781 aagtccggag cgcactgaaa cagaaacttc gccagaatct tgagtcgcgt cttgatgcag
      841 aagtggatgc cattctggat gagctgctgg gcgtagcagc ggttcctgag ccggaaggta
      901 tcgcgggtga cgggagtgct tcagatggcg gtgaacctac acctgacagc gacatgatga
      961 tgtaagcatg cgcaagggac catcggtgtg tgccggtggt ctttatattg ttgtgagctt
     1021 ccggattgcg ggagacgggg tatgtaccag atggaaaaaa tcacaacagg tgtgtcatac
     1081 accacgtcag cggtgggaac gggctactgg ttcctgcagt tgctggacag gttttccccg
     1141 tctcagtggg cggcaatagg cgtgctgggg agtctgttgt ttgggctgct gacatatctg
     1201 actaacctgt atttcaaaat cagagaggac cgtcgtaagg cggcgcgggg agagtaaagc
     1261 gatgaagaaa aaatacgaac tggttgttaa agggataaat aattacccga ataagattac
     1321 tgttactgtg gcactggaaa ttggtgggta tccgtcactg ttgttgccag atgtggcgat
     1381 tagtcttgac cgtactgaag atgccacgct ggagttttac gaagctgagg cgaaaaagca
     1441 ggcgaagcag tttttcatgg atgttgctgc cgggttatgt gaaggggatg gtccgttgcc
     1501 ggaaaagcgc cccgtaattt tagaggcgca ggatgtgttg ataacctaca gaggaaaact
     1561 accgggaata attactggtt ctctgaagac tccaccgctg gcctgaagac ttaacatatc
     1621 cagggatttg aaatcgataa accctgataa atatccatga acaccaaaat caaatacggc
     1681 ctgtcggctg ccgttctggc gctgattgcc gcaggtgcgc ctgcgcctga aatcctcgac
     1741 cagtttctgg atgaaaagga aggtaaccac accacggcat accgtgatgg cgcgggtatc
     1801 tggaccatct gccgcggtgc catcctggtg gatagtaaac ctgtcgtccc gggcatgaag
     1861 ttgtcgaagg aaaaatgcga ccaggtcaac gccattgagc gtgataaggc gctggcatgg
     1921 gtggagcgca atattaaagt gccgctgacc gaaccccaga aagcgggtat cgcgtcattt
     1981 tgtccctata acattggccc cggtaagtgt ttcccgtcga cgttttacag acggattaat
     2041 gctggtgacc gcaggggagc atgcgaagcg attcgctggt ggattaagga cggtggcaga
     2101 gactgccgta tccgctcaaa taattgctac ggtcaggtat cccggcgaga ccaggaaagt
     2161 gcgctggcgt gctgggacat cgacagataa gcagaatatt ttgctgaaaa taaggcatga
     2221 gcacgcggac ggataacacg aaatcctgcg aactggcgaa acgtaagtga ataaaagtaa
     2281 aaaccccgtt tgttggcacc aggcggggtt ttgtgtttct gaccttgagt aaggcaaggg
     2341 agaacatggc gaagtataaa cgaattctgt tgaggttgac catgaaaaac ggccttgaac
     2401 tgaaagcgcc tgtaactgat gacatcagca gagcactggc ttttgccatt aagtgggtgg
     2461 cggtcggtgt tgctgtgtcc ccgatgctgt atgggctggc aaaactggtc attgcgttga
     2521 aatcgtgaag ggaggattaa gcatgtcaga caaactcata acgctggcga agatcctctg
     2581 tgtaattgtc ggcatttcat tttcactaat gctggttgct ctttttcttt ccatggcctg
     2641 gatgatgttg tcttcgtcgg ggctgctggg gtgaacataa accgaatgct ttccgcgttt
     2701 accgttattc tgctggtggt ctgtggtgcg ctgtggctgg caacagacca ttaccgtgat
     2761 aacgccatca cctacaaagc gcagcgcgat aaaaaagcca gagagctgga gctggcaaac
     2821 gcaaccatta ctgacatgca gcagcgccag cgtgatgttg ccgctggtcg taagcgcctg
     2881 cggatcaacg ccacctgctc cggtaccgtg cgtgaagcca ccggcacctc cggaatggat
     2941 aatgcaaccg gcccccgact ggcagacacc gctgaacggg attatttcac cctcagagag
     3001 cggttgatga caatgcagaa gcaactggaa ggggcgcagg aatatatccg cactcagtgt
     3061 attaactagt atttttgtta tccggagaat gcatgaagaa attactggta accgtaaagc
     3121 cttttcaggg aacaattccg ttccgtattt tgcagcgtgg tcgtgttctt gttgaaggtt
     3181 cgttcagtgg taaatgtacg caattacact cccggacctt tcaggtgaat gccacgaatg
     3241 aagagctaac cgttgagtgt acgatgaatg ccgctaaatg ccgcatggta tccgctgcat
     3301 tacagccagt gtgttgagcg accttattaa ccatgcgcgg tattgtcgcc gtatccccgc
     3361 attaacagag accgcagccc gaccgggaga ctcctctgcg cgagtgtgcg gggataatca
     3421 aaaacgatac acaccggggt ttaccgcgtt aacggagcgc ggcgttgtcc cctcatggtc
     3481 gctggtccgg tgcgatggtg gaagaaaccg gacgatgtgt tacctcgcaa gctctgttat
     3541 gtcatgtgtc tgatttgtga tttaagtcgg ataattgtcg ttgccattaa gcagaggatt
     3601 ga
//
LOCUS       DAJVSY010000251         3587 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.253, whole genome shotgun sequence.
ACCESSION   DAJVSY010000251 DAJVSY010000000
VERSION     DAJVSY010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3587
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.253"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(623..2332)
                     /locus_tag="OQQ19_004058"
     CDS             complement(623..2332)
                     /locus_tag="OQQ19_004058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858142.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShET2/EspL2 family type III secretion system
                     effector toxin"
                     /protein_id="HCS1805484.1"
                     /translation="MPLNKTFSSSIFSTKNSLSTDMSVNRDNRTITSSIMRVSNSSEL
                     IQFKNKTAPYFSEKRNVKVNINGVAKDIYGRQIVCRHLASYWEMNFMETNGKVNYQLL
                     STPDAIAKNVCLEKTEDFSKSPAYIYFVENKKWGTVITNFFYNMKKNGDFVRTLSACT
                     LNHQMALGLKIKRVQESEKWVVQFFDPNRTVTHKRTVFTCDSHFELSQLSAKDFFDDF
                     YWKIYGLEQPGQVIFEDRHNSPLTNTVKLLPDELINSRVIYHAITKNLTEVLFILMEK
                     YKNGEISQSKLVNLLATRSSDGTPAFYIALQNGCSDIIQVYGKILNMCNLSQETILTL
                     LAAVGANNVPGLCMSFMNGHVDTIKAYGEIVFKTPLTSDKRLYLLAAKDSHDLPGLFF
                     ALQNGHADSIRMFGSLLNKKMLSSEQIKELLKVKHGLFMALQNGHTKAIMAYGDILKI
                     LPPHQEYIDELLWIKNPNGTSGLFMAFYNGHTETIRAFCNILKNYSFTTRRLVEMLSA
                     TNKDGIPGVFVSVVNRDKETILEYCRIIKENNLEPDTIAEQFSKKMKKTFIEIINRFN
                     HFL"
     gene            complement(2764..3483)
                     /locus_tag="OQQ19_004059"
     CDS             complement(2764..3483)
                     /locus_tag="OQQ19_004059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector
                     phosphothreonine lyase"
                     /protein_id="HCS1805485.1"
                     /translation="MPIKKPCLKLNLDSLNVVRSEIPQMLSANERLKNNFNILYNQIR
                     QYPAYYFKVASNVPTYSDICQFFSVMYQGFQIVNHSGDVFIHACRENPQSKGDFVGDK
                     FHISIAREQVPLAFQILSGLLFSEDSPIDKWKITDMNRVSQQSRVGIGAQFTLYVKSD
                     QECSQYSALLLHKIRQFIMCLESNLLRSKIAPGEYPASDVRPEDWKYVSYRNELRSDR
                     DGSERQEQMLREEPFYRLMIE"
BASE COUNT         1066 a          720 c          639 g         1162 t
ORIGIN      
        1 aagcttgata caactggtct ggtatataca gtttctttga gtgcggttac gtccacagag
       61 gtaacggtaa aagtaacccc ttgtcgggac cactccgacc gcgcacagag gcattttcat
      121 cgctgacagg ccgcattgcc tcgcagggct ggaggaggat cggtgatatc cggacgaccg
      181 taccggctta cgccgggctt cggcggtttt actcctctgc catgtgcaac aacggagtgc
      241 cgccttacat gccgctggcg cggcatatcc tggtaacatt tttgttgata ccaccttccg
      301 gccttatcct gaccagtggg ctttcctggc atcgatgata ccgatgaacg cgcatgatat
      361 tgagccgacg atattacggg caactggaaa tactcaccct ctggatgtga cctttatcca
      421 tgaagaagat ttggccatac catggaaacc tgaacaatca tcagtttacg cccatgtaaa
      481 cccctacggg atatttgaac tcgatatgga aacaaggttg ccaatcgagg tggttgcctg
      541 aaagttggca gttacccggt cactacacct tgttggagtg aacatatcaa aaacaggtag
      601 ttacacaatt taaattacag tctcataaaa aatgattaaa tctatttatt atttcaataa
      661 acgttttttt catcttcttt gaaaattgtt ctgctatagt atccggttcc agattgttct
      721 cttttattat tctacaatac tctaatattg tttctttgtc tctatttact acagatacaa
      781 atacaccagg aataccatct ttattagttg cggacagcat ttcgaccaat cgtcttgtgg
      841 taaaactata gttttttaga atattacaaa aggcacgtat tgtttcggta tggccattat
      901 aaaatgccat aaaaagtcct gatgtaccgt tgggattttt tatccataat aattcatcta
      961 tatattcctg gtgagggggg agtattttta gtatatctcc atacgccata atggcctttg
     1021 tgtgcccatt ttgaagtgcc ataaacaacc catgctttac tttcaataat tctttaattt
     1081 gttcactact aagcattttc ttattaagca gacttccgaa catacgaata ctatctgcat
     1141 gtccattctg caatgcaaaa aataacccag gtaaatcatg gctgtctttc gcagctaata
     1201 gatataatct cttatcggaa gttaacgggg ttttaaagac tatttcccca taggctttta
     1261 ttgtgtctac atgtccgttc ataaaagaca tgcataaacc cggcacattg tttgccccta
     1321 ccgcagcaag caatgtaagt attgtttctt gactaagatt gcacatattt aatatcttac
     1381 catatacttg aataatgtct gaacatccgt tttgaagtgc tatataaaat gcaggagtac
     1441 catcagagct tctcgtggcc agaaggttca ccagtttaga ttgagaaatt tcaccatttt
     1501 tgtatttttc catcagtata aataatactt ctgtcagatt ctttgttatc gcatgatata
     1561 taactctgga attgatcaat tcatctggta aaagtttcac tgtgtttgtt agaggggaat
     1621 tatgcctatc ttcaaatatt acctgcccgg gttgctccag accataaatt ttccaataaa
     1681 aatcatcaaa aaaatcctta gcggataatt gactcagttc gaaatggcta tcacaagtaa
     1741 atacagtacg tttatgagta acagttcgat taggatcgaa aaactgaaca acccattttt
     1801 cactttcttg tacgcgcttt attttcaacc ctaacgccat ttggtggttt aatgtgcatg
     1861 ctgataatgt tctgacaaag tctccatttt ttttcatgtt ataaaaaaaa ttagtaataa
     1921 ctgttcccca ctttttattt tccacaaaat aaatataagc tggtgatttt gaaaaatctt
     1981 ccgttttttc caaacataca ttttttgcaa tagcatcagg ggtgctaaga agctgatagt
     2041 ttaccttccc atttgtttcc ataaaattca tttcccaata ggaagctagg tgacggcaaa
     2101 ctatttgtct tccatatata tcttttgcca ctccatttat atttaccttc acatttctct
     2161 tttctgaaaa ataaggtgct gttttattct taaactgaat tagttcactg gagtttgaga
     2221 ccctcataat agaacttgtt attgttctat tatctctgtt aacagacata tctgttgata
     2281 acgaattttt tgttgaaaat atactagatg aaaatgtttt atttaacggc atagaagaca
     2341 accatagaga tgttataata ctattagatt gcagttacta atagtaaaag cctccttaca
     2401 aggaggtagc ttattcagaa tgctcctata agatagcgag ctcgtcaacg atacagatga
     2461 tctgattata ttgtgcaaaa ggagaacagg aaaataggca ctggaaaaga tgaaggcctg
     2521 atgggagcat taactaatgc aaaatccgac aggttaatat cccgaaaagc aatcaaacga
     2581 ctcaaacagg agatgcacgc tgaagtggtg gacaactgtt cggatttcag atgagtagct
     2641 cagcagttta tgagccgaat gctctgtcac ggtcaggaat caggctgcat acgctgtgcc
     2701 aaatctaatc gtagttattc taaccagttt tccagctaca aggtggtgta gctggcatct
     2761 tctctactct atcatcaaac gataaaatgg ttcctctcgt aacatttgct cttgcctttc
     2821 acttccatct cgatcgcttc gtagttcatt acgatagctg acatatttcc agtcttcagg
     2881 tctaacatct gacgccggat actccccggg agcgattttg cttcttaata gattagactc
     2941 gagacacatt ataaattgtc gtattttatg aagtaataaa gcactatatt gcgagcattc
     3001 ctgatctgat tttacatata gcgtaaactg agctcctatc cccacacgag attgctgaga
     3061 aactcgattc atatcagtta tcttccattt atctatagga ctgtcctctg aaaataataa
     3121 accagacaaa atttggaatg ccagaggaac ttgctcccta gctatactaa tatgaaactt
     3181 gtccccaaca aaatccccct tactctgagg attttcacga catgcatgaa taaacacatc
     3241 tccactatgg ttcacaatct ggaatccttg gtacatgaca gaaaaaaatt gacatatatc
     3301 agagtaagtt ggcacgttcg atgctacttt gaaatagtac gctgggtatt gccgtatttg
     3361 gttgtacaat atattgaagt tatttttcaa tctttcattc gcagaaagca tctgcggtat
     3421 ttcagacctc acaacattca aagaatctaa atttagtttt agacagggct tttttatggg
     3481 catagaaaac gtcctctata aaatagatat attatcttat attgattgtt tatcatcttt
     3541 tataaaacga tacattatat gtaatgtatg taagcgtaag ggtcttc
//
LOCUS       DAJVSY010000252         3540 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.254, whole genome shotgun sequence.
ACCESSION   DAJVSY010000252 DAJVSY010000000
VERSION     DAJVSY010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3540
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.254"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            232..543
                     /locus_tag="OQQ19_004060"
     CDS             232..543
                     /locus_tag="OQQ19_004060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000483533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HCS1805486.1"
                     /translation="MFNVITHPAALDELLELPDNLRGRMTRLIERLEQEGNKMKMPHS
                     RVIGGGLFELRVGDKNIARTLYAYATGNEIYLLHAFVKKTQKTPTKAIEIARMRLKEM
                     N"
     gene            543..830
                     /locus_tag="OQQ19_004061"
     CDS             543..830
                     /locus_tag="OQQ19_004061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000865085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1805487.1"
                     /translation="MKVKGVPFSQVKQKLLSTPEAVKGYEDADKELEMVEMLYEMREK
                     AGLTKSALAERMGLRPSAISRLESNPLGASMKTLTKYAHACGATIDIHAVY"
     gene            complement(1367..2554)
                     /locus_tag="OQQ19_004062"
     CDS             complement(1367..2554)
                     /locus_tag="OQQ19_004062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
                     /protein_id="HCS1805488.1"
                     /translation="MLPRFADIFQQGNRWLNWLEKQPEGAVRPVVIESVTKIMACGTT
                     LMGYTQWCCSSPDCCHTKKVCFRCKSRSCPHCGVKAGAQWIQYLLSLVPDCPWQHIVF
                     TLPCQYWSLVFHNRWLLAEMSRIAADVILEICHQADVEPRIFTVIHTWGRDQQWHPHI
                     HLSTTAGGVTSGHTWKNLHFYARKVMSMWRYRITRLLSRKYPDLVMPDALAAEGSSKR
                     EWNRFLDTHYRRGWNVNVSRVMDNATHVAVYFGSYLKKPPVPVSRLEHYAGQDEIGLR
                     YNSHRTKREEYLLMSGDEFMERFSWHVADKGFRMVRYYGFLSPAKRRLLEEVVYIITE
                     TVRKTAMQITWRGMYQRLLKVDPLKCVLCGSQMRFTGLKRGYRLAEQVLMHEPLARMR
                     WCG"
     gene            complement(2554..2919)
                     /locus_tag="OQQ19_004063"
     CDS             complement(2554..2919)
                     /locus_tag="OQQ19_004063"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805489.1"
                     /translation="MARSAKPRKRKPASQRSELPRYVVKLHEDDFFDEEDAEVLRFDS
                     FDDAVECCADLNIPFFVDAGNKKLVFWFVRVDDEGYPEIARCTEREFATILSGISAGG
                     MYCPECGTVHWPDGVAPPF"
     gene            3004..3333
                     /locus_tag="OQQ19_004064"
                     /pseudo
     CDS             3004..3333
                     /locus_tag="OQQ19_004064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146522.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3 family transposase"
     gene            3363..3446
                     /locus_tag="OQQ19_004065"
                     /pseudo
     CDS             3363..3446
                     /locus_tag="OQQ19_004065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052676.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
     gene            3446..>3540
                     /locus_tag="OQQ19_004066"
     CDS             3446..>3540
                     /locus_tag="OQQ19_004066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HCS1805490.1"
                     /translation="MEQKWTSKALSDLARLYDFLVLASKPAAARMV"
BASE COUNT          926 a          920 c          835 g          859 t
ORIGIN      
        1 aaggtgaaat ctgtcaatca gtaccggctt acgccgggct tcggcggttt tactcctgtg
       61 ccatatgcaa caacggagtg ccgccttcca tgccgctaac gcggcatcaa aaaatccctc
      121 ttctccagtt gcccccctcc gaactcagag tgtattttca tttattgatg aaatttactg
      181 tttgcgcaat tttcctgttt tagtgtattt tgtcattctg gaggctataa tatgtttaat
      241 gtgattactc acccggccgc actggatgaa cttctagaat taccagacaa tctgcgtggt
      301 cgtatgacca gactgattga acggctggaa caggaaggta acaaaatgaa aatgcctcac
      361 agccgtgtaa ttggcggagg gctttttgaa ctgagagtcg gggataaaaa tatcgcaagg
      421 acactgtacg cttatgcaac gggtaacgaa atctatctgc tgcatgcatt tgtgaaaaaa
      481 acgcaaaaga caccaacgaa agctattgaa attgccagga tgcgtctgaa ggagatgaac
      541 tgatgaaagt aaaaggtgtt ccattcagcc aggtaaagca aaaactactc agtactccag
      601 aagctgtcaa agggtatgag gatgctgaca aagaactgga gatggtggaa atgttatacg
      661 aaatgagaga aaaagcggga ttaacaaagt cagcactggc cgaacgaatg gggttacgcc
      721 cgtcagccat cagtcgcctg gaaagtaacc ctttaggggc cagcatgaaa actttgacaa
      781 aatatgctca tgcctgtggc gcaaccatcg atattcacgc tgtctattga ggggtccgct
      841 tggaattcgg aaaataaacc acgttaagac tattttttag ataaatgact ttcaggaatc
      901 gccaagatgg cgggataaca gcggttttgg tgtcctaaat cgtacaattc tgtacatcca
      961 cgcaagggaa tgtacggaag taagccagac ggttatcgga cggtcagaac atttcgtaca
     1021 gcctttacgt tcagtgagtt agctggcctg gacgtaacca ctcgttagct caattctctt
     1081 agcgtgggaa aatttccgaa ttccaagcgg acccctttat ccttgccccg ctgaatgagg
     1141 aaacgctgtt ccgggggatt atgctgaacg tcttccgttc atcgatagga attaaaaccc
     1201 caaaaagatt aaaaaacacc acaaaacgga tgtttcttca acaccacttt tgctcatatg
     1261 aacggaaccg acgattaaac tggatggctc tgattgattc agggtatgaa tggcggtttt
     1321 ttgctccgtt tccctcaaaa tggacgctac ttaccctctg cggctctcag ccgcaccacc
     1381 gcatccgggc cagcggctca tgcatcagga cctgctctgc cagacggtag ccccgcttca
     1441 gccccgtaaa acgcatctga ctcccgcaca gcacgcactt cagcgggtca accttcagta
     1501 acctctgata catccctctc caggtgattt gcatcgccgt ttttctcact gtctccgtta
     1561 tgatgtacac cacttcttcc agtaaccgcc gtttcgccgg actcagaaaa ccgtagtacc
     1621 tcaccatacg gaacccctta tccgccacat gccaggagaa cctttccatg aactcatctc
     1681 cactcatcaa caggtattct tcccgttttg ttcggtgact gttgtaacgc agtccgattt
     1741 catcctgacc ggcataatgc tccagacgac tcaccggcac cggtggcttt ttcaggtaag
     1801 agccaaagta caccgccaca tgggtggcat tatccatcac ccgggatacg ttgacattcc
     1861 agccacggcg gtaatgcgtg tccaggaagc gattccattc ccgtttactg cttccttctg
     1921 ctgccagcgc atccggcatc accaggtcag ggtatttccg tgacagtaac cgtgttatcc
     1981 ggtagcgcca catgctcatc accttacggg cgtaaaaatg aagatttttc caggtgtggc
     2041 ccgacgtcac accaccggca gttgtcgata aatggatatg cggatgccac tgctggtcac
     2101 gcccccatgt gtggatcacc gtgaatatcc tcggctccac atctgcctga tggcagattt
     2161 ccagtatcac atccgctgca atgcggctca tctctgccag caaccaccgg ttgtggaaca
     2221 ccagggacca gtactggcag ggtaacgtga acacaatatg ctgccatggg cagtcgggga
     2281 ccaggctcag cagatactgt atccactgtg cgccagcctt caccccgcag tgcgggcagg
     2341 agcggctttt acaccggaag cagacctttt ttgtatggca acagtccggt gatgaacagc
     2401 accactgtgt ataccccatc agtgtggtcc cgcacgccat gattttggtc accgactcaa
     2461 tcaccaccgg acgtactgcc ccttccggct gcttctccag ccagttaagc cagcggtttc
     2521 cctgctgaaa gatatcggca aaacggggaa gcatcagaag ggcggggcga ctccgtccgg
     2581 ccagtgaacc gtgccacact ccgggcagta cataccgccg gcgctgatac cggaaagaat
     2641 ggtcgcaaat tcccgctccg tgcagcgggc aatttccgga tacccttcgt catcaacacg
     2701 tacaaaccag aagaccagtt ttttgtttcc ggcatccaca aagaacggaa tattcaggtc
     2761 tgcgcaacac tcaacggcat catcaaaact atcaaagcgc agaacttctg cgtcttcttc
     2821 gtcaaaaaaa tcatcttcgt gaagcttcac gacatagcgg ggaagttcgc ttctttgaga
     2881 ggcgggttta cgtttacggg gtttagctga acgggccata taaccacctg aaagacaatg
     2941 acattgcctg tttttataac ggtaattgca gaccatgaca agccgcagcc gtcaggctgc
     3001 ctactcgagc ttcagctcaa taaaggcgaa tatcgacata aattaccccg atggatcttt
     3061 tttgcaaatc agggtgaatt cacgaccggt gattacgaag aaatcatgaa taaggccagc
     3121 gccctgagtc tggtatcgaa tgcaatcctg tactggaata catcaagaat aagcaatatt
     3181 gttgaagggt tacgtgaaaa tggtgaggtt attgatgatg acgtattagc ccatatatca
     3241 ttactgccct ataaacacgt attacctaat ggtacttatt ttgttgatgg agaaccttac
     3301 ggtactgagc ctaccgaaag agcaaaaccg taagtttctg ttcaaatgct cccgctggtc
     3361 catccggaca gattatcgac catcaggctg tacaggcctg ggcggacagc ctcagtactg
     3421 acaatccgtt accggtgcca cgctgatgga acagaagtgg accagtaagg cgctttctga
     3481 tttggcgcgg ttatatgatt ttctggtgct ggccagtaaa cctgctgccg ccagaatggt
//
LOCUS       DAJVSY010000253         3495 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.255, whole genome shotgun sequence.
ACCESSION   DAJVSY010000253 DAJVSY010000000
VERSION     DAJVSY010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3495)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3495)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3495
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.255"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..239
                     /locus_tag="OQQ19_004067"
     CDS             <1..239
                     /locus_tag="OQQ19_004067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HCS1805491.1"
                     /translation="AQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTD
                     KWQRRTHSLWRHREWHASAFTGICNDLAAASTFV"
     gene            176..778
                     /locus_tag="OQQ19_004068"
     CDS             176..778
                     /locus_tag="OQQ19_004068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000090847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HCS1805492.1"
                     /translation="MARICLYGDLQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLSD
                     GWYQVRIAGRDAGETELSARLNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVA
                     IWMPGVGIMASNLLFSLGASMTLGGVAQMLAPKARTPRTQTTDNGKQNTCFSSLDNMV
                     AQGNVLPVLYGEMRVGSRVVSQEISTADEGDGGQVVVIGR"
     gene            839..>3495
                     /locus_tag="OQQ19_004069"
     CDS             839..>3495
                     /locus_tag="OQQ19_004069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HCS1805493.1"
                     /translation="MGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKS
                     VLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITR
                     TITSANIDRLRLTFGVQALVENTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTT
                     SQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALV
                     GVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCR
                     WDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRK
                     AWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSAL
                     KDRHNVVEVNWIDPDNGHETATELVEDAQAILRYGRNVTKMDAFGCTSRGQAHRAGLW
                     LIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLD
                     REITLPSSCTTLISLVDGNGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTL
                     RQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDRRGTVNGVTPPAVQHL
                     TAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVAADDGSERLVSTARTTETTYRFRQ
                     LALGNYSLTVRAVNARGQQGDPASVSFRIAAPAAPVTIELIPGYFQITAVPKLAVYDP
                     TVQFEFWFSEKRIADIRQVETSARYLGTALYWIAASINIRPGHDYYFYVRSVNTVGKS
                     AFVEAVGRASDDAEGYLSFYKGLINNTHLGKELWTQIDNGQLAPDLTEIRTSITNVSN
                     EITQTVNKKLENQSAAIQQIQKVQVDTNN"
BASE COUNT          789 a          882 c         1119 g          705 t
ORIGIN      
        1 cagcacaacc gggcgatgtg ctgctgtgct gttttggttc atcggtgccg aatcatgccg
       61 ccatttactg cggcgacggt gagctgctgc accatattcc tgaacaactg agtaaacgag
      121 agaggtatac cgacaaatgg cagcgacgca cacactccct ctggcgtcac cgggaatggc
      181 acgcatctgc ctttacgggg atttgcaacg atttggccgc cgcatcgacc ttcgtgtgaa
      241 aacgggggct gaagccatcc gcgcactggc cacacagctc ccggcgtttc gtcagaaact
      301 gagtgacggc tggtatcagg tgcgcattgc cgggcgtgat gcaggtgaaa ccgaattgtc
      361 tgcccgtctt aatgagccgc tggcaaatgg tgcagtgatc cacatagtac cgcgtctggt
      421 gggagctaaa agtggcggtg tgtttcaggc ggtgctgggg gcagctgtta tggcggttgc
      481 tatatggatg ccgggggtag gaattatggc gagtaatctg ctgttttctc tcggtgccag
      541 tatgacgctt ggcggtgttg cacagatgct ggcaccgaaa gccagaactc cccgtacaca
      601 gacaacggat aacggcaaac agaacacctg tttctcctca ctggataaca tggttgccca
      661 gggcaatgtt ctgcctgttc tgtacggtga aatgcgcgtg gggtcgcggg tggtatctca
      721 ggagatcagc acggcagacg aaggggatgg tggtcaggtt gtggtgattg gtcgctgatg
      781 caaaatgttt catgtgaaac cgcctgcggg cggttttgtc gtttatggag cgtgaggaat
      841 gggtaaaggc agcagtaagg ggcatacccc gcgcgaagcg aaggacaacc tgaaatccac
      901 gcagttgctg agtgtgattg atgccatcag cgaagggccg gttgacggtc cggtggatgg
      961 attaaaaagc gtgctgctga acggtacgcc agtcctggac agcgagggga agacaaactt
     1021 ttccggtgtt acggtggtgt tccgcgccgg cgagcaggag cagacaccgc cggaggggtt
     1081 tgaatcttcc ggctcagaga ctgtgctggg tacggaagtg aaatacgaca cgccgatcac
     1141 ccggaccatc acgtcggcaa acattgatcg tctgcgcctg accttcggtg tgcaggcact
     1201 ggtggaaaac acctcaaagg gggaccggaa tccgtcggaa gtccgcctgc tggttcagat
     1261 acagcgtaac ggtggctggg tgacggaaaa agacatcacc attaagggca aaaccacttc
     1321 gcagtatctg gcctcggtgg tggtgggtaa cctgccgccg cgcccgttta atatccggat
     1381 gcgcaggatg acaccggaca gcaccacaga ccagctgcag aacaaaacgc tctggtcgtc
     1441 gtacaccgaa atcatcgatg tgaaacagtg ctacccgaac acggcgctgg tcggcgtgca
     1501 ggtggattca gagcagttcg gtaaccagca ggtgagtcgc aattatcatc ttcgcgggcg
     1561 cattctgcag gtgccgtcga actataaccc gcagacgcgg caatacagcg gtatctggga
     1621 cggaacgctt aagccagcat acagcaacaa catggcctgg tgtcggtggg acatgctcac
     1681 tcatccgcgc tacggcatgg ggaaacgtct tggtgcggca gatgtggaca aatgggcgct
     1741 gtatgtcatc ggccagtact gcgaccagtc agtgccggac ggatttggcg gcacggagcc
     1801 gcgcatcacc tgtaacgctt acctgaccac acagcgtaag gcgtgggatg ttctcagtga
     1861 tttctgctcg gcgatgcgct gtatgccggt atggaacggg cagacgctga cgttcgtgca
     1921 ggaccgaccg tcggataaag tgtggaccta taaccgcagt aatgtggtga tgccggatga
     1981 tggcgcgccg ttccgctaca gcttcagcgc cctgaaggac cgccataatg tcgttgaggt
     2041 gaactggatt gatccggaca acggtcatga gacggcgaca gagcttgtgg aggacgcgca
     2101 ggccattctc cgttacggtc gtaacgtcac gaagatggat gcctttggct gtaccagccg
     2161 gggacaggcg caccgcgccg ggctgtggct gattaaaacg gaactgctgg aaacgcagac
     2221 cgtggacttc agcgtcggcg cagaagggct tcgccatgta ccgggtgatg tcattgaaat
     2281 ctgcgatgat gattatgccg gtatcagcac cggtggtcgc gtactggcgg tgaacagcca
     2341 gacccggacg ctgacgctcg accgtgaaat cacgctgccg tcctcctgta ccacgctgat
     2401 aagcctggtt gacggaaatg gcaatccggt cagcgtggag gttcagtccg tcaccgacgg
     2461 cgtgaaggtg aaagtgagcc gggttcctga cggcgttgca gaatacagcg tgtgggggct
     2521 gaagctgccg acgctgcgcc agcgcctgtt ccgctgcgtg agtatccgtg agaacgacga
     2581 cggcacgtat gccatcaccg ccgtgcagca tgtgccggaa aaagaggcca tcgtggataa
     2641 cggggcacac tttgacggtg accggcgcgg cacggtgaat ggtgtcacgc cgccagcggt
     2701 gcagcatctg accgccgaag tcaccgcaga cagcggggaa tatcaggtgc tggcgcgatg
     2761 ggacacgccg aaggtggtga agggtgtgag cttcctgctt cgcctgaccg tggcagcgga
     2821 cgacggcagt gagcggctgg tcagcacagc caggacgacg gaaaccacat accgcttcag
     2881 gcagctggcg ctggggaatt acagtctgac agtccgggcg gtaaatgccc gggggcagca
     2941 gggcgatccg gcgtcggtat cgttccggat tgcggcaccg gcagcgcctg tcactattga
     3001 actgataccg gggtattttc agataacggc ggtcccgaaa ctggctgtat acgacccgac
     3061 ggtgcagttt gagttctggt tttcggaaaa gcggattgcg gatatcaggc aggttgaaac
     3121 cagcgcccgc tatcttggca cggcgctgta ctggatagcc gccagtatca atatcaggcc
     3181 gggccatgat tattattttt acgttcgcag tgtgaacacc gttggcaaat cggcatttgt
     3241 ggaggccgtc ggtcgggcga gcgatgatgc ggaaggttat ctgagttttt ataaagggtt
     3301 gatcaataac acgcatctcg gcaaggagtt gtggacgcag attgataacg gtcagcttgc
     3361 gccggacctg actgaaatca ggacgtccat tacgaatgtc agcaatgaaa tcacgcaaac
     3421 cgtcaataaa aaactggaaa atcagagtgc tgcaatccag cagatacaga aagttcaggt
     3481 tgatacaaat aataa
//
LOCUS       DAJVSY010000254         3484 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.256, whole genome shotgun sequence.
ACCESSION   DAJVSY010000254 DAJVSY010000000
VERSION     DAJVSY010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3484)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3484)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3484
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.256"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            1..1947
                     /locus_tag="OQQ19_004070"
                     /pseudo
     CDS             1..1947
                     /locus_tag="OQQ19_004070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414756.2"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
     gene            complement(1990..2436)
                     /gene="ivy"
                     /locus_tag="OQQ19_004071"
     CDS             complement(1990..2436)
                     /gene="ivy"
                     /locus_tag="OQQ19_004071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308274.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ivy family C-type lysozyme inhibitor"
                     /protein_id="HCS1805494.1"
                     /translation="MFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQG
                     HKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFS
                     TIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK"
     gene            2617..3387
                     /gene="yafV"
                     /locus_tag="OQQ19_004072"
     CDS             2617..3387
                     /gene="yafV"
                     /locus_tag="OQQ19_004072"
                     /EC_number="3.5.1.111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutaramate amidase"
                     /protein_id="HCS1805495.1"
                     /translation="MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMF
                     TSGFAMEAAASSLAQDDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTV
                     HFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVYYDLRFPVWSRNLNDYDLAI
                     YVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIA
                     TADAHQATRIDAELSMMALREYREKFPAWQDADEFRLR"
BASE COUNT          779 a          890 c         1000 g          815 t
ORIGIN      
        1 atgattatca aaaaagagta cggctgactg gagttctcag cttatgccca gtctcgcgtg
       61 ctgcaaaaac tctccggcgt gagcgggatc ctggcgatta ccgtcggcgt gccgaactca
      121 ttaggcccgg gcgagctgct gcaacattac ggcactgacg agcagaaaga tcactatctg
      181 ccgcgtctgg cgcgtggtca ggagatccct tgctttgcac tgacaagccc ggaagcgggt
      241 tccgatgcgg gcgcgattcc ggacaccggg attgtctgca tgggcgaatg gcagggccag
      301 caggtgctgg ggatgcgtct gacttggaac aaacgctata ttacgctggc accgattgcg
      361 actgtgcttg ggctggcgtt taaactctcc gacccggaaa agctgctggg tggcgcagaa
      421 gatttaggta ttacctgtgc gctgatcccg accaccacgc cgggcgtgga aattggtcgt
      481 cgccacttcc cgctgaacgt accgttccag aacggaccga cgcgcggtaa agatgtcttc
      541 gtaccgatcg attacatcat cggtgggccg aaaatggccg ggcaaggctg gcggatgctg
      601 gtggagtgcc tctcggtagg ccgcggcatc accctgcctt ccaactcaac cggcggcgtg
      661 aaatcggtag cgctggcaac gggcgcgtat gctcacattc gccgtcagtt caaaatctct
      721 atcggaaaga tggaagggat tgaagagccg ctggcgcgta ttgccggtaa tgcctacgtg
      781 atggatgctg cggcatcgct gattacctac ggcattatgc tcggcgaaaa acctgccgtg
      841 ctgttggcta tcgttaagta tcactgtacc caccgcgggc agcagtcgat tattgatgcg
      901 atggatatca ctggtggcaa aggcattatg ctcgggcaaa gcaacttcct ggcgcgtgct
      961 taccagggcg caccgattgc catcaccgtt gaaggggcta acattctgac ccgcagcatg
     1021 atgatcttcg gacaaggagc gattcgttgc catccgtacg tgctggaaga gatggaagcg
     1081 gcgaagaaca atgacgtcaa cgcgttcgat aaactgttgt tcaaacatat cggtcacgtc
     1141 ggtagcaaca aagttcgcag cttctggctg ggcctgacgc gcggtttaac cagcagcacg
     1201 ccaaccggcg atgccactaa acgctactat cagcacctga accgcctgag cgccaacctc
     1261 gccctgcttt ctgatgtctc gatggcagtg ctgggcggca gcctgaaacg tcgcgagcgc
     1321 atctcggccc gtctggggga tattttaagc cagctctacc tcgcctctgc cgtgctgaag
     1381 cgttatgacg acgaaggccg taatgaagcc gacctgccgc tggtgcactg gggcgtacaa
     1441 gatgcgctgt atcaggctga acaggcgatg gatgatttac tgcaaaactt cccgaaccgc
     1501 gtggttgccg ggctgctgaa tgtggtgatc ttcccgaccg gacgtcatta tctggcacct
     1561 tctgacaagc tggatcataa agtggcgaag attttacaag tgccgaacgc cacccgttcc
     1621 cgcattggtc gcggtcagta cctgacgccg agcgagcata atccggttgg cttgctggaa
     1681 gaggcgctgg tggatgtgat tgccgccgac ccaattcatc agcggatctg taaagagctg
     1741 ggtaaaaacc tgccgtttac ccgtctggat gaactggcgc acaacgcgct ggcgaagggg
     1801 ctgattgata aagatgaagc cgctattctg gtgaaagctg aagaaagccg tctgcgcagt
     1861 attaacgttg atgactttga tccggaagag ctggcgacga agccggtaaa gttgccggag
     1921 aaagtgcgga aagttgaagc cgcgtaattg aataacggag ccgaaaggct ccgtttcttt
     1981 atccgctaat tatttaaaat taaagccatc cggatggttt tccaggctgc cggtcaacgc
     2041 cgcgaacagc accgttttac catcaatcga aagcgcatcg ttcacattca gccaggtgag
     2101 tttctcttgc gacgttttct catcaatagt cgagaacagc cccgtcatct gattagattt
     2161 ctcggaccac atcacagcga tacgttgcga gccacagtca tgcggtttgc acgcgctcat
     2221 cacctgatac gtctcatctc ccaacgttac ggtttgtgcg ggagtataag taccgccttt
     2281 catcacccag gcaggcagct tatgcccttg taccatctga ttaaatgcag ctttggtggt
     2341 ttcgcccttt gcaaggctgc taatggttaa atcatcctgc gccattgcac tggtggcgat
     2401 gaccagagcg gcgactgtcg ttattgcctt aaacatcatt cctcccgagc ttatcctgcc
     2461 catgttatta accttctaaa gcctggcgat aacacgataa tttgcaaatc agatatttcc
     2521 aatatcagca tttgttatca atttattctg cgctaaggca actgcctgat aaggtgttaa
     2581 agttataaaa cccttcgcat aaaggagttg tacaccgtgc ctggtttgaa gattacgctt
     2641 ttgcagcaac cactggtgtg gatggatggc cctgccaacc tgcgtcattt tgatcgtcaa
     2701 ctggaaggta ttaccgggcg cgatgtgatc gttctaccgg agatgtttac cagcggcttt
     2761 gccatggaag cggcagcttc gtcgctagca caagatgacg tagtgaactg gatgacagct
     2821 aaggcgcagc agtgcaatgc gctgatagca ggcagtgttg cattacaaac ggagtctggt
     2881 tcggttaacc gctttttgct ggttgagccg ggcggcacgg tacattttta tgataagcgt
     2941 catctgttcc gcatggcaga tgagcatcta cattataaag cgggcaatgc gcgagtgatt
     3001 gtggaatggc gcggctggcg tattttgccg ttggtgtact acgacttacg ttttccggtg
     3061 tggtcgcgca atctcaacga ttatgacctc gccatctacg ttgccaactg gcctgctccg
     3121 cgctctctgc actggcaggc attgctgacg gcccgcgcga ttgagaatca ggcgtatgtg
     3181 gcgggatgca atcgcgtcgg cagcgatggc aacggctgcc attatcgcgg tgacagccgg
     3241 gtgattaatc cacaaggcga gattatcgct actgccgacg cgcatcaggc aacgcgcatt
     3301 gatgcggagc tgtcgatgat ggcattgcgg gaatatagag aaaagtttcc ggcatggcag
     3361 gatgcggatg agtttaggtt gcggtgagtg ggggttgtgt ttaaggctgg gggagagtcg
     3421 gggtaagact acgaaagccc gctctccgca aggactgacg ccagatagtt tctgtccata
     3481 gctg
//
LOCUS       DAJVSY010000255         3410 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.257, whole genome shotgun sequence.
ACCESSION   DAJVSY010000255 DAJVSY010000000
VERSION     DAJVSY010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3410
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.257"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(20..322)
                     /locus_tag="OQQ19_004073"
     CDS             complement(20..322)
                     /locus_tag="OQQ19_004073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000890114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805496.1"
                     /translation="MLEIVLSPVKAQQFTVTLGAQVCTIRLNQRTTGMYIDIIVNGEP
                     CLYGVLCLNNNRIVRYGYLPFQGDLFFTDTEGNSDPDWRGLGSRYRLYWLLPEELI"
     gene            complement(322..1032)
                     /locus_tag="OQQ19_004074"
     CDS             complement(322..1032)
                     /locus_tag="OQQ19_004074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000010340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805497.1"
                     /translation="MSFSFDNISLNNFSLSESNVLSAVRGGGVLGLINSVLAPSFGIY
                     YARNDPAGAHQKGGKPFSPDSFVVVEVGAEASVSTVPVEQGAYTTFNKIQRSPELHVT
                     FIVEGWTAFSGSVPNLTNFSTTSRTNVLETLERMRTTAGLYDIETPDKTWTSCDLVKY
                     DYRMRSNNGPTLLTVTAVFQTVMNTGEVSVGSTDKSSPTDNDKAKGAASVKTQPVTAS
                     VTQPSDADRRSATNRGIT"
     gene            complement(1029..3050)
                     /locus_tag="OQQ19_004075"
     CDS             complement(1029..3050)
                     /locus_tag="OQQ19_004075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HCS1805498.1"
                     /translation="MAQVLDELVLSLGIDDRDFTAGEQAVHAALNRLTTVMEGVADTF
                     SQGQKKTSESLEKTGKDADKTARRMEDAGKRASRFFSGIRSEILALAGVSLTLGGLKN
                     LVTGFARDLNRLSVESDAFGMKARNLDGWLRAARANNVDEGEMSGAFSRLANAKAAFR
                     AGRSFDPVLQDLFQVAARAGISVDLNTDSTEAIMRKLAVIFPRLTKSEQTAYGNALGF
                     SYAGQQFLGSGHALKDVDEFTSRSQVTPGRTALARKLRKELVELDQTWSGIGMTISTA
                     LMPYALKLSHWLETLGDWMQQHPEEVNRFITTFLNDVESVASLANKAAGELGGWQNVI
                     ITLIGLKVASWVRGLTKALSGPGGLLFAITALYPVVDGLLTSIVGRENKDWLDSHGFF
                     WASDGTFFFNKKEMETYQTKLDVGEKPGNITRAQSPTVWQQGMLDTQASQATGREAAF
                     GESWLQGMRATQEKLGNAMQNRQRPTKTGEALLGWLQPKLSQLEEKYNLPPGLLRSVA
                     ITESRGNQFAVSPAGAMGLFQFMPKTASEFGLRGNDAFDPEKAADAAARKLGGLIRFF
                     HGDLAKALAAYNWGEGNVQRKGLAAAPEETRNYIPRVLANLPYPGAAMAIRSLHPAPV
                     SQSTVTETTHIGTLNVTTTSDNVKGITDDARRRITNSALVSVYSSGVTG"
     gene            complement(3034..3216)
                     /locus_tag="OQQ19_004076"
     CDS             complement(3034..3216)
                     /locus_tag="OQQ19_004076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000228829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HCS1805499.1"
                     /translation="MVDYVNVPRTIATVISSGKASKAELDSVLGVQDLWDLLEIIHVD
                     AHNEQVIQENRNGAGT"
BASE COUNT          798 a          993 c          814 g          805 t
ORIGIN      
        1 attttacgtt gtctgtagct catatcagtt cctcaggtaa cagccagtag agccggtacc
       61 gggatccgag cccccgccag tcagggtcac tattcccctc cgtgtcggta aaaaacaggt
      121 ccccctgaaa cggcaggtat ccgtaccgga caatccggtt attattcaga cacagcacgc
      181 catacaggca cggttcacca ttaacaatga tatcgatata catccccgta gtacgctgat
      241 tcaggcgaat ggtgcagacc tgagcgccca gtgtcaccgt aaactgctgg gctttaacgg
      301 gagataaaac aatttccagc atcaggtgat ccccctgttc gtggcacttc gtctgtcagc
      361 gtctgacggt tgtgtcaccg acgccgtaac tggctgcgtt ttaaccgatg cggccccttt
      421 tgctttatcg ttgtccgtgg gagacgactt atccgtactt cccactgaca cctctcctgt
      481 attcattacg gtctgaaata ccgcagtaac cgtcagtaag gtcggaccat tattacttcg
      541 cattcggtag tcatatttca caaggtcgca ggatgtccat gtcttgtccg gcgtctcaat
      601 atcgtagagt cctgccgtgg tacgcatcct ttcaagcgtt tccagcacat tcgtccgcga
      661 ggtggtggaa aaatttgtca ggttcgggac ggatccggaa aaggccgtcc acccctctac
      721 aatgaaagtc acatgcagtt ccggcgatct ctggatttta ttaaaggtgg tataagcccc
      781 ctgctccacg gggacggtgg aaacagaagc ctccgcgccc acctcaacga caacaaaaga
      841 atccggggag aaaggtttgc cacccttctg atgggcacct gccggatcat tccgtgcgta
      901 ataaataccg aatgacggtg ccagtacact attaatgagt cccaggacac cgccgccacg
      961 aactgcactc agtacgttac tttcactgag cgaaaagtta ttcagggaaa tattatcgaa
     1021 agaaaaactc atcctgttac cccgctggaa taaaccgaca caagcgccga attcgtgata
     1081 cgccgacgtg cgtcatcggt aatacccttc acattgtccg acgttgtggt gacattcagt
     1141 gtcccgatat gcgtggtttc cgttacggtg gactgcgata caggcgcagg atggagcgac
     1201 cgtatggcca ttgccgcacc cggataaggc aggttcgcca gcacccgcgg aatatagttg
     1261 cgggtctcct ccggagcagc agccagtccc ttacgctgaa catttccctc tccccagtta
     1321 tatgccgcca gagccttagc cagatcgcca tgaaaaaaac gtatcaggcc accaagtttt
     1381 ctcgcggcgg catcagcggc tttttcggga tcaaaggcat cgttccccct cagaccaaat
     1441 tcactggccg tcttcggcat gaactgaaac agtcccatcg caccagcagg tgagacggca
     1501 aactgattac cacgggattc ggtgatcgca acgctgcgca gcagtccggg cggcaggtta
     1561 tatttttcct ccagttgaga cagtttcggt tgcagccagc ctaacagggc ttccccggtc
     1621 ttcgtcggtc gctggcggtt ttgcatggca ttaccgagtt tttcctgcgt cgcacgcata
     1681 ccctgtagcc aggattcacc gaaggctgct tccctcccgg ttgcctgaga agcctgagta
     1741 tccagcatgc cctgctgcca tactgtgggt gattgtgccc gggtgatgtt gccaggcttt
     1801 tctccgacat ccagttttgt ctgatacgtc tccatctctt tcttattgaa aaagaaagtc
     1861 ccgtctgaag cccagaaaaa accatgtgaa tccagccagt ccttattttc cctgccaaca
     1921 atggatgtca gtaatccgtc aacaaccggg taaagcgccg ttatcgcaaa aagaaggcct
     1981 ccggggccac tgagggcttt tgtcagcccc cgcacccatg acgccacttt cagcccgatc
     2041 agcgtaataa tgacattctg ccagcccccc agttctccgg cagccttatt cgccagggag
     2101 gccactgact caacgtcatt cagaaatgtg gtgataaacc tgttcacttc ctccggatgt
     2161 tgctgcatcc agtcaccgag tgtctccagc cagtggctga gcttcagcgc gtacggcatc
     2221 aacgcggtgc taatcgtcat cccgatgccg gaccaggtct gatcgagctc aacaagctct
     2281 tttcgtagct tacgggccag cgctgtacgc cccggcgtaa cctgcgaacg ggaagtaaat
     2341 tcgtccacat ctttcagcgc atgaccggag ccaagaaact gctgtccggc ataactgaag
     2401 cccagcgcgt tgccgtaggc agtttgttcg gactttgtca gtcgcggaaa aataaccgcc
     2461 agcttgcgca tgatggcttc agtgctgtca gtatttaaat caacactaat gcccgccctg
     2521 gctgcaacct gaaacaaatc ctgtaacaca ggatcaaagg accttccggc tctgaaggcc
     2581 gcttttgcat ttgcaagccg ggaaaatgcc ccagacattt ccccttcatc aacattattt
     2641 gcccgcgcag cccgtaacca tccgtccaga tttctggcct tcatgccaaa agcatcggat
     2701 tccacggaca gacggttcag atcacgggca aaacctgtta ccaggttctt cagccccccc
     2761 agcgtcagac tgacacccgc aagagccaga atctcgctac ggatccctga aaaaaaacgg
     2821 gacgcccgtt tcccggcatc ttccattcga cgggccgttt tatcagcatc ttttccggtt
     2881 ttttccagtg attcactggt tttcttctgt ccctgactga atgtgtcagc gacaccttcc
     2941 atcaccgtcg tgagccggtt aagggcagca tgtactgcct gttccccggc agtaaagtcc
     3001 ctgtcatcaa tcccgaggga cagaacaagc tcatcaagta cctgcgccat ttctgttctc
     3061 ctgtatcacc tgttcgttat gggcatccac atgaattatt tccagcagat cccataagtc
     3121 ctgcacacca aggacagaat ccagttcagc ttttgaagcc ttaccggagg agataacggt
     3181 cgcaatggta cggggaacat taacgtaatc caccaccccg aacggtctgt cggggtcgag
     3241 ataacgcggg gggatatcta gctgacgacg gtagcgaaaa aatccacatg cagcttaaag
     3301 acctccgcac gcagattaag acgggtaatg atttcttcaa tatcctcttc aacaagcggt
     3361 ctccggatgc tgcgtttttt cggatcggga acaaactgca cacagtccat
//
LOCUS       DAJVSY010000256         3381 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.258, whole genome shotgun sequence.
ACCESSION   DAJVSY010000256 DAJVSY010000000
VERSION     DAJVSY010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3381
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.258"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(55..2707)
                     /locus_tag="OQQ19_004077"
                     /pseudo
     CDS             complement(55..2707)
                     /locus_tag="OQQ19_004077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415720.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
BASE COUNT          843 a          792 c          782 g          964 t
ORIGIN      
        1 gctgcttaaa aaaagaacaa atggtagtgt ccgctattgc cagtacacct cattcacata
       61 gacattcagc tggctgttgc ctgcggtgat gtcatacccc agtatcatgc tggcacgccc
      121 cagcagcgat tcgtagtgat tcagatgtat attgaggcca ttactcgcct tcatagccat
      181 ctcattctgg tggctgtatg taagctgggt ttgcggctct atatagaacc cataaccagt
      241 aggggacagg ttgaacctct gcccggcttc tagggagatg ctcattccat tcgcagtgcc
      301 gttggcgtta acgccgttgt tatgactgtc cagtacgtgg aaactatttt tctggcgcga
      361 tgcttttata acgagatcgc tgtaaaaacc gttttgtgcc atgtaactgg cgtacattcc
      421 catgtagtct gaacgtgcgg taccgtcgcc tccgctatag tccggcgatg catgtgttga
      481 gccaatatac agaccgacat acaacggcat ttcatcagag agacgtttat ccccaccaaa
      541 ctggataccg ctgtaaccca tgtcaaagcc gctcagtttg ccactggcaa aggagtccag
      601 gcttccccca taactgcgca accagatatt accgtcttta ctctgatttc gcaggtcacc
      661 catccgttgc atcagcgtac ggttttcaac atagttcaat aagtaaccga cattgagata
      721 attgccgcca gcatctgcgg tcgtggtggg tttaggcgtg ggagcgggtt caggcgtagg
      781 atcggggttg actatgggag gctgagcggg agctggtgtg ggttcaggat taggagtcgg
      841 ttccggaact gtcccggaag cgtaaagctc ccagttagtg ccatttttac gcacatcgta
      901 cagatatccc ccccaactca acctgagaag acgcgctgaa cgaggccgcg ccgtcagtgg
      961 tttttaccac tgtcagaact tcatttcccg ttgtggcctc gctgccctgg ttgcggatag
     1021 ccaatacgtg attaccagca ctactcccgc tgatattcaa taaatcccct ttattattaa
     1081 cgccattacc ctcgccaaca acatcagcac gcataataaa ggtactgtta ccgctcaggt
     1141 tctctacgtt taatgtggca aatgtgccgg cagttgaccc gtggctggca aaatcgacag
     1201 ttgaatggct cagcgccagc gtgtcgagat tagaattact tgttacgttc cagacgctgt
     1261 tattcattgc aacgtccagt tttccgccat tgacattatc gctgagggag gaacctgtcc
     1321 aaaccgaccc agggtgcata tccagattga ttagcccacc tttggaaaaa acgctaccgt
     1381 tgataagcat acgacccgag gcgttgatgc ggctggcggc ataaccatcg tcatgttgcg
     1441 ttgcaatggc catctggtcg ggtgtactca tatcaatgac cagatcgctc gtgaggtcga
     1501 tctggctgtt ggtcatggca taaattcccc tggctcctgc cgcgccggtg atagccaaac
     1561 tgtctccggt tattctaccg ccgctgagcg cccacaaacc cagcgccaga ctgccattac
     1621 gatcaactgt aatatcggta ttttgcatgt tgacaacagc cgttgccgtc tgggccgagg
     1681 caccataaga accgccggaa aagatgctgt ttcgttgcgc tgccgtgcca gaaaaattga
     1741 ttgtcgcgtc tgaaccactg gtgacgaggc caccgccctg cgcggaagaa atatggctat
     1801 ctgcaccgat agtggttgta ccaccacgaa cttcgacgcc attggccgcg gctccagtta
     1861 catcaacagt gagtgcattc gcgctaacct ggccaaagct ccagaggccg tgtgcattat
     1921 cgccattggt tttaatggaa ctgtttgttc cgagatcgac aacagagttt ttctgtacgt
     1981 ttatccccat ggcgctgtag ccctgaacat cgattgtcag gtctgtagcc gtaaaacgcg
     2041 cagcaccatt ggcgttattg ccgttgagac caccgatata aacacctgta cttccatcgg
     2101 tcgtgatttt acttccgctt ccaagatcga cactggtgcc atagtcattg atggttaggc
     2161 ctataccgtt cgagttttca atggtgaatt gagtggctgt tagtgttgag ctatgcccaa
     2221 taatgatgcc gtcatcgtta ctcttaatgg tgctgcctgt gcctaagtca gcatgggtat
     2281 agtcaccaat taagttaatg ccgatggcag aggtttgacc aacaacatct actgtgagtc
     2341 ggttagctgt cagggagctg tttttgccct gaataatgat tccttttgca tatccagagg
     2401 cgtcgttgac attgacggtg acatcattac ccaggttgat attgccaggc gtgtttcctg
     2461 ctggggtcat tacaccatag aggtttcctg atggatcggc ggtatctcct gtaattctgt
     2521 caccatcatt aatagtaata ttggtgccat attgacttcc tgtatcagca gctatcagca
     2581 ggggggaaaa gataattgca ttcaaaccaa tagcgccaaa ttttatcagt tgaattgagg
     2641 gcgaacggat ttttaattca gcgagacgat ctgctttggt attcccattg tgttgtttga
     2701 tgcccatacc actcctatat agtacccaga ctatgggtct atggattttg tcattttgtt
     2761 taaatcaatg aataatatcc tcttatcatc atgatatttg tatggtgcaa tcatgatgag
     2821 cttctcagag aataattctc tattaccggg caaaatcagg aacacaggaa ttaatatata
     2881 tttaacatcc cccttacaaa ggtgagttta tatcgagtta ttccctaagt tgtcgttact
     2941 tattccaatt cgttactata aatatggcaa aaatattaca acaaacagcg gttaaaaaat
     3001 ttggtgaaga ttttttgtaa taatcctaat tagttatggg aatttcgctt gatgtatctg
     3061 cataacaaaa acaatatgcg ccatttttgc attactaata agaaaaagca aaaaacatcg
     3121 atattcattt ttggtcaatg ggttttctgg cctatcgttg ttattgtgct actggttatc
     3181 attttcatct tgccagcata ttggagcgtg atcaattttg atcagctgtg aaggtggctg
     3241 atgtgtagtg atacaaaaac ttacgttata tcactgctaa tgagatatcc gtcatctgaa
     3301 cacttatgtc tttaattatt ctcgtggttc actataggca ataagcacaa aagtgtagga
     3361 tgttacaaga atgattagga c
//
LOCUS       DAJVSY010000257         3317 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.259, whole genome shotgun sequence.
ACCESSION   DAJVSY010000257 DAJVSY010000000
VERSION     DAJVSY010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3317
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.259"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(118..744)
                     /gene="dsbA"
                     /locus_tag="OQQ19_004078"
     CDS             complement(118..744)
                     /gene="dsbA"
                     /locus_tag="OQQ19_004078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA"
                     /protein_id="HCS1805500.1"
                     /translation="MKKIWLALAGLVLAFSASAAQYEDGKQYTTLEKPVAGAPQVLEF
                     FSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAWAVAMALG
                     VEDKVTVPLFEGVQKTQTIRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKA
                     AADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKK"
     gene            complement(761..1747)
                     /gene="srkA"
                     /locus_tag="OQQ19_004079"
     CDS             complement(761..1747)
                     /gene="srkA"
                     /locus_tag="OQQ19_004079"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response kinase SrkA"
                     /protein_id="HCS1805501.1"
                     /translation="MNNSAFTFQTLHPDTIMDALFEQGIRVDSGLTPLNSYENRVYQF
                     QDEDRRRIVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFY
                     FAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLF
                     EDATLIPSGLKAAFLKATDELIAAVTAHWREDSTVLRLHGDCHAGNILWRDGPMFVDL
                     DDARNGPAIQDLWMLLNGDKAEQRMQLETIIEAYEEFSEFDTAEIGLIEPLRAMRLVY
                     YLAWLMRRWADPAFPKNFPWLTGEDYWLRQTATFIEQAKVLQEPPLQLTPMY"
     gene            complement(1824..2093)
                     /locus_tag="OQQ19_004080"
     CDS             complement(1824..2093)
                     /locus_tag="OQQ19_004080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihD family protein"
                     /protein_id="HCS1805502.1"
                     /translation="MKCKRLNEVIEFLQPAWQKEPDLNLLQFLQKLAKESGFDGELAD
                     LTDDILIYHLKMRDSAKDAVIPGLQKDYEEDFKTALLRARGVIKE"
     gene            2163..2747
                     /gene="mobA"
                     /locus_tag="OQQ19_004081"
     CDS             2163..2747
                     /gene="mobA"
                     /locus_tag="OQQ19_004081"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase MobA"
                     /protein_id="HCS1805503.1"
                     /translation="MNLMTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALM
                     TQLSHVVVNANRHQEIYQASGLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDT
                     PYIPPDLAARLNHQRKDAPVVWVHDGERDHPTIALVNRAIEPLLLEYLQAGERRVMAF
                     MRLAGGHAVDFSDHKDAFVNVNTPEELARWQEKR"
     gene            2729..3256
                     /gene="mobB"
                     /locus_tag="OQQ19_004082"
     CDS             2729..3256
                     /gene="mobB"
                     /locus_tag="OQQ19_004082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418293.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HCS1805504.1"
                     /translation="MAGKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT
                     HHDMDVDKPGKDSYELRKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKL
                     DLILVEGFKHEEIAKIVLFRDGARHRPEELVIDRHVIAVASDVPLNLDVALLDINDVE
                     GLADFVVEWMQKQNG"
BASE COUNT          880 a          799 c          785 g          853 t
ORIGIN      
        1 tccacttatg ctgaaataat gtccagcggc aggatgtatt atcagaatgt atttatattt
       61 attaaataat aaaaaaagcc cgtgaatatt cacgggcttt atgtaattta cattgaatta
      121 ttttttctcg gacagatatt tcactgtatc agcatactgc tgaacaaaaa catccatatt
      181 gctggtatcc ataccctgcg gattcagctg atatttaccg ttaacaaaca tcgccggaac
      241 accgcgcaat tgcacgtcag ctgcagcttt ttcctgctga gctaccagag atttcaccac
      301 gaagctgttc cacgccgcgt cgtactcttc acctttaata cctgcgttga taaatacatc
      361 gcggatatca gaagcagaac gaatggtctg ggttttctgt acgccttcaa acagcggaac
      421 agtcactttg tcttccacgc ccagcgccat cgccacagcc catgcctgag tcagatcttt
      481 gcccaggtca ccacccatga agttgacgtg gtatttagtc atcttcacgc cttccggcag
      541 ttttttcttc acattatcag aaatatgcag aacttcttca aactgatagc agtgcggaca
      601 gaagaaagag aaaaactcca gcacttgcgg cgcgccagct accggttttt ccagggtagt
      661 gtactgttta ccatcttcat actgcgccgc cgatgcgcta aacgctaaaa ctaaaccagc
      721 cagcgccagc caaatctttt tcatgatcta ctctctccga ttaatacata ggtgttaatt
      781 gtaaaggggg ttcttgtaga acttttgcct gttctataaa agtcgccgtt tgtcgcagcc
      841 agtaatcttc cccggttaac cacgggaaat ttttcgggaa cgcgggatca gcccaacgcc
      901 gcattagcca ggcaagataa taaaccaaac gcatggcgcg taaaggttca atcagtccga
      961 tttcagcggt gtcgaactcg ctaaattctt cataagcttc aataatagtt tccagttgca
     1021 tccgctgctc ggctttatcg ccattgagca acatccacaa atcctgaata gctggaccat
     1081 tacgtgcatc atccagatca acaaacattg gaccatcgcg ccagagaata ttcccggcgt
     1141 ggcagtctcc atgtaagcgc agaacggtgg aatcttcccg ccagtgcgct gtaacggcgg
     1201 cgatcagctc atctgtcgct ttcaggaatg ccgctttcaa cccggaaggt atcagtgtag
     1261 cgtcctcaaa cagcttgcgt ggctcaatga gatattcatt cagaccgatg gtcgggcgat
     1321 ggataaaaag ctgtttgcgc cccgtctggt gcatacgccc taaataacgc ccaaccgctt
     1381 ccatctgatc gatattatca gcttcgaact ggcgaccacc gacgcttgga aaaacagcga
     1441 aataaaatcc ctgatgattc aataaagtct gaccgttaaa ggccacaggt gctgcgaccg
     1501 gaacttcatc atttaccaac tgcaacgcaa attgatgttc ttcgaggatt tgatcggctg
     1561 tccaacgttc agggcgataa aatttgacga caatacgtcg acgatcttcg tcctgaaatt
     1621 gatagacacg gttttcatag ctgttaagcg gggtaagacc ggaatccacc cggatccctt
     1681 gctcaaatag agcatccatg atggtatccg ggtgtagtgt ctggaaagta aaagcgctgt
     1741 tgttcatccc atcatccgga aaacattacg aatgatgaag gatatcattt cacgatgatt
     1801 ttggtggcgc cgcttacaag cttttactct ttaattacgc cgcgagcgcg taacagcgcc
     1861 gttttgaagt cttcttcata atctttctgc aaacccggga tcaccgcatc tttcgcggaa
     1921 tcacgcattt tcaggtgata gatcagaatg tcatccgtca aatccgccag ttcgccgtca
     1981 aaacctgact ctttcgccag tttctgcaaa aattgcaaca ggttaaggtc tggctctttt
     2041 tgccaggctg gctggaggaa ttcaataact tcattcagac gtttacattt catagtgatg
     2101 ctccttactc ttgagacaga cacgttagca gggtcaatcc cacaataaaa gaggcgatat
     2161 cggtgaatct gatgacgacg ataacaggcg ttgtgctggc aggcggtaaa gccagacgaa
     2221 tgggtggcgt agataaagga ttgcttgaat taaacggcaa accattatgg caacatgtcg
     2281 ctgacgcgct tatgacgcag ctctctcacg tcgtggttaa tgccaatcgt catcaggaaa
     2341 tctatcaggc aagcggtctg aaagtgattg aagattcact ggcggattac ccaggccctc
     2401 tggcaggaat gctttcagta atgcagcagg aagctggtga gtggtttttg ttttgcccgt
     2461 gcgatacgcc ttacattccc cctgatttag cagcccggct taatcatcag cgcaaagatg
     2521 cgcctgtcgt gtgggtccat gacggtgaac gcgatcaccc gactattgct ctggtaaacc
     2581 gcgctattga gcctttatta ctggaatatc tgcaagcagg agaacgccgg gtaatggcat
     2641 ttatgcgtct ggctggcggt catgcggttg atttcagcga tcataaagat gcatttgtta
     2701 acgtgaatac gccagaggag cttgcccgat ggcaggaaaa acgatgatac cgttactcgc
     2761 ctttgccgcg tggagtggta ccggaaaaac tacgcttttg aaaaaactga tcccggcatt
     2821 atgcgccaga gggatccgtc cagggctgat taagcatacg caccatgata tggatgttga
     2881 taagccaggc aaagatagct atgagctgcg caaggctggc gcggcacaaa ccatcgttgc
     2941 cagccagcaa cgatgggcct tgatgacgga aacaccagac gaagaagagc tggatctaca
     3001 gtttctcgca agtcgaatgg atacctcaaa gctggatttg attctggtcg aagggtttaa
     3061 gcatgaagag atcgcaaaga ttgtgctgtt tcgcgatgga gccagacatc gacctgaaga
     3121 attagtgata gacaggcatg ttattgctgt agccagtgat gtgccgctta atcttgatgt
     3181 cgcattactg gatattaatg atgttgaggg gctggctgat tttgtggtgg agtggatgca
     3241 aaagcagaac ggataagcaa gagtaggctg gatcagacgc agccagtgtc gcatccgacc
     3301 tttttctgca ccaacgc
//
LOCUS       DAJVSY010000258         3232 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.260, whole genome shotgun sequence.
ACCESSION   DAJVSY010000258 DAJVSY010000000
VERSION     DAJVSY010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3232)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3232)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3232
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.260"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            577..1293
                     /locus_tag="OQQ19_004083"
     CDS             577..1293
                     /locus_tag="OQQ19_004083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805505.1"
                     /translation="MNDNSLLRNSSLFIAYMGCVGWVSAYSYGWGTSFYYGFPWWVVG
                     AGLDDVARSLLYAIIVMGILFTGWGIGILFFLLIKKRSKIQDLSFFRLFFAITLLFFP
                     VIFELLILKQYFILPLSLSCIISSLVISIIIRIYGRIFSVSCFSDIPFVREHRIKLIM
                     AGFLVYFWLFSFLVGWYKPQLKKEYQMLCYNNSWYYVLARYDSRLVLSSSFKDDSNRF
                     LIFNTEQSGFYEINDVYVRK"
     gene            1845..2249
                     /locus_tag="OQQ19_004084"
     CDS             1845..2249
                     /locus_tag="OQQ19_004084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858300.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805506.1"
                     /translation="MNTALIVALMCMWYAVPAAAKETLLAMPRNSTEHCYAEINVHGP
                     YGVYFRVVPHPPGGKSWVECNSDYYYSDKPPGVQILGTRAGCRVYGICGTTSTLHVAG
                     RGVVCIKNICSPRGMIIHRIRKRPVVAVSDEM"
     gene            2312..2946
                     /locus_tag="OQQ19_004085"
                     /pseudo
     CDS             2312..2946
                     /locus_tag="OQQ19_004085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(2988..3197)
                     /locus_tag="OQQ19_004086"
                     /pseudo
     CDS             complement(2988..3197)
                     /locus_tag="OQQ19_004086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611998.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
BASE COUNT          892 a          675 c          734 g          931 t
ORIGIN      
        1 ttgtgggcca taaatattcc aaaaaaatag cccgctccgt ttattaccgg aacgggcgag
       61 agcatgacat tgtctgtaat tataatgaga ctgctgattc tacttatttt taatttcaag
      121 aaaagcgttt tctacaaaga attatgagat ttaatgtttt gtttagacaa tattgtcatt
      181 ctgttcaata atgaaagtct tcatcaacaa caagtaaaaa caacgtccct ctcatcgaac
      241 cggacttgca gatttcccgc atccggctct cttgcaacac atcagacctt cacgttcggg
      301 cggttatggg gaaggtccag caagctgtat gagccctaac tgtttgaata ccagtagatt
      361 accagaaact tctatcgatt gaagacatta ccaactagcg ttactaaatg ttgaccaagt
      421 tttgttcact tgtctggttt tgatagtagc attctgcaga gtattttgat atgataaata
      481 tgcattaaca atgatattat tgttaatttc ctagcatgaa aattaaaaga tcaacttttt
      541 atctcgaata ttttttacat tatcagttgg tttcttatga atgacaattc attgcttaga
      601 aattcttcat tattcatcgc ctatatggga tgtgtagggt gggtcagtgc ttattcttat
      661 ggctggggaa cctcttttta ctatggattt ccatggtggg ttgttggtgc aggtttggat
      721 gatgttgcca gaagtttact ctatgctatc atagtaatgg gtatactttt taccggttgg
      781 gggattggta ttttattttt tcttcttata aagaaaagaa gtaaaataca agacttgagt
      841 ttttttagac tattttttgc tattacccta ctgtttttcc ctgtaatatt cgaactttta
      901 attctcaaac aatatttcat acttccatta tcactttcat gcattattag ttcattggtt
      961 atttcaataa taattcgcat atatggacgg atcttttctg tatcatgttt ttcagatatc
     1021 ccttttgtta gagaacaccg cattaagtta attatggctg gttttttggt ttatttttgg
     1081 cttttttcct ttcttgttgg ctggtataaa cctcaattaa aaaaagaata tcagatgctt
     1141 tgttataata atagttggta ttatgttctt gctcgttatg attcacggct cgttttgtct
     1201 agttcattta aagatgacag taacagattc ttaatattta atacagaaca gtcgggattt
     1261 tatgaaatca atgatgttta tgtcagaaag taataatcct ctcccacaaa gtgaattaaa
     1321 cgaatatata atgcgttcga agtatatgta ttgagctgtc atactgagaa acaaacctta
     1381 gggcagcaca attaaagcca gaaacaacta tgcaagaaag ttactaaata agtgctcgga
     1441 acagtaaaac actcaggggg gactcagtcc agattatgta atcagataaa ttgccaaaca
     1501 tcacaaatca ccagcaggac tgagtgatgc cgagcattgc accaataccc cgtgatgaac
     1561 gatgcctgat gcagaaagct ccctataaaa caaagaacaa aaactacgac cggcgattca
     1621 ccgtcatact gatgctgcat cgtggtgaca ctgtctgtca ctttcatgtt gactgaacaa
     1681 ctctgctgcg aagaaggtgt accgccggcg ggatttgatt gtccggcgtc tagcttccac
     1741 ttccctgatg gaactgaaag ttgttatggc cggtcagctt gccctgtccg caggacatga
     1801 ggtgctgtga cggacagcac cagtaacgga aagtgacaat aaaaatgaat actgcgctga
     1861 tagttgcact aatgtgtatg tggtatgcgg tacccgctgc tgcaaaagag actttactgg
     1921 ctatgccacg taattcaaca gaacattgct atgcggagat taatgtgcac ggaccatatg
     1981 gggtgtattt ccgagtggtc ccgcatcccc ccgggggaaa gagctgggtc gaatgtaaca
     2041 gtgactacta ttactctgat aaaccaccgg gagtacagat actcggaacc cgtgcagggt
     2101 gtcgggtata cggaatctgc gggaccacct cgacactgca tgtggctgga agaggggttg
     2161 tgtgtattaa aaatatatgc agtccacgtg ggatgataat tcacaggata cggaaacgtc
     2221 ctgtagtggc tgtaagcgat gagatgtgat cttatccagc aatagtggac acgcggctaa
     2281 gtgagtaaac tctcagtcag aggtgactca catgacaaaa acagtatcaa ccagcaaaaa
     2341 aacacgtaaa cagcattcgc ctgaattttg cagtgaagcc ctgaagcttg ctgaacgcat
     2401 cggtgttgct gccgcagccc gtgaactcag cctgtatgaa tctcagctct atgcgtggcg
     2461 cagcaaactg cagcaacaga tgacctcgtc tgagcgtgaa agtgaactgg ccgctgaaaa
     2521 tgcccgcctg aagcggcaac tggcggtgca ggcagaggaa ctggctatcc tccaaaaggc
     2581 cgcgacatac tttgcgaagc gcctgaaatg aagtatgtct ttattgaaaa acatcaggct
     2641 gagttcagca tcaaggcaat gtgccgcgcg ctccgggtgg cccgcagcgg ctggtatacg
     2701 tggtgtcagc ggcggacagg gataagccct cgtcagcagt tccgtcagca ctgcgacagc
     2761 gttgtcctcg cggcggcctt tacccggtca aaacagcgtt acggtgcacc acgcctgacg
     2821 gatgaactgc gtgctcaggg ttaccacttt aacgtaaaaa ccgtggcggc aagcctgcgc
     2881 cgtcaggggc tgagggcaaa ggcctcccgg aagttcagcc cggtcagtta ccgcgcacat
     2941 ggcctgaggt gtactggcaa tagcggacac caccatttgt tctttttcta agcagtcatc
     3001 tgataatatt ttatcctgaa ggctgccggg gagatattcc ccagacgaga gtgacgacgc
     3061 tgacgattgt agaaaatctc aatgtattcc cgtattactg agatggcctc atcccggctc
     3121 ttaaaacgat agtggctcag gctttcattt ttcagcgttc cccagaagct ttccatcgga
     3181 gcgttgtcgt aacagtttga ggtagcctga gtttaacgga cactccttcc tg
//
LOCUS       DAJVSY010000259         3223 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.261, whole genome shotgun sequence.
ACCESSION   DAJVSY010000259 DAJVSY010000000
VERSION     DAJVSY010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3223)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3223)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.261"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..907
                     /locus_tag="OQQ19_004087"
     CDS             <1..907
                     /locus_tag="OQQ19_004087"
                     /EC_number="2.7.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pseudouridine kinase"
                     /protein_id="HCS1805507.1"
                     /translation="ANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNK
                     AWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDM
                     NISNAITAEYLAQHREFIQRAKVIVADCNISEEALAWILDNAANVPVFVDPVSAWKCV
                     KVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLNRLVLSMGGDGVY
                     YSDISGENSWSAPIKTNVINVTGAGDAMMAGLASCWVDGMPFAESVRFAQGCSSMALS
                     CEYTNNPDLSIANVISLVENAERLN"
     gene            874..1833
                     /gene="psuG"
                     /locus_tag="OQQ19_004088"
     CDS             874..1833
                     /gene="psuG"
                     /locus_tag="OQQ19_004088"
                     /EC_number="4.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine-5'-phosphate glycosidase"
                     /protein_id="HCS1805508.1"
                     /translation="MVSGERRTSELKISPELLQISPEVQDALKNKKPVVALESTIISH
                     GMPFPQNAQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEEFELLGREGHNVTKVS
                     RRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQEL
                     ANTNVTVVCAGAKSILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSSFDVSIRLDS
                     ASEIARAMAVKWQSGLNGGLVVANPIPEQFAMPEESINAAIDQAVAEAEEQGVIGKES
                     TLFLLARVAELTGGDSLKSNIQLVFNNAILASEIAKEYQRLAG"
     gene            1927..3176
                     /locus_tag="OQQ19_004089"
                     /pseudo
     CDS             1927..3176
                     /locus_tag="OQQ19_004089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416669.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
BASE COUNT          770 a          724 c          872 g          857 t
ORIGIN      
        1 ggcgaatatt gatgtcgccg gatattcaca tgaatcatta aattatgcgg attcaaatcc
       61 aggtaaaata aaatttacgc ctggtggagt cgggcgcaat attgcacaaa acctggcgtt
      121 gctggggaac aaagcctggc tactgagcgc cgtaggcagt gacttttatg gtcaatcgct
      181 gctaacgcaa accaatcaat ctggcgttta tgtcgataaa tgcctgattg tgccgggaga
      241 aaatacgtct agttatttat cattactcga taataccggt gaaatgctgg ttgctataaa
      301 tgacatgaat attagcaacg ctattacagc tgaatatctc gcacagcacc gtgaatttat
      361 tcagagggca aaggtcattg tcgcggactg taatatcagt gaagaggcac tggcatggat
      421 tctggataat gccgccaacg tacccgtatt tgtcgatccg gtttccgcat ggaaatgtgt
      481 caaagtgcgc gaccgtctaa atcagatcca cactctgaag ccaaaccgcc ttgaagcgga
      541 aaccctgagt gggattgcgc tgtcagggcg tgaagatgtg gcaaaagttg ctgcctggtt
      601 ccatcaacat ggcctgaacc gactggtatt gagcatgggc ggcgacggcg tttattacag
      661 cgatatcagc ggtgaaaata gctggtctgc gccgatcaaa accaatgtta ttaatgttac
      721 cggagcgggc gatgccatga tggcgggact tgcttcgtgt tgggtagacg gaatgccgtt
      781 tgccgaatct gttcgtttcg cacagggatg ttcgtcaatg gcgctctcct gtgaatacac
      841 caataacccc gatttatcga ttgccaacgt tatatcgtta gtggagaacg cagaacgtct
      901 gaattaaaaa tttcccctga attattacaa atttccccgg aagtgcagga cgctttaaaa
      961 aacaaaaaac cggttgtggc gctggaatcg accattattt ctcacgggat gccgttccca
     1021 caaaatgccc agaccgcaat tgaagtagaa gaaactattc gtaaacaggg cgctgtacct
     1081 gccactatcg ccattattgg cggcgtgatg aaagtgggtt taagcaaaga agaatttgaa
     1141 ttactgggtc gtgaagggca taacgtgacc aaagttagtc gtcgcgattt accttttgtt
     1201 gttgccgccg gaaaaaatgg cgcaaccact gtggcttcaa cgatgattat tgcggcgctt
     1261 gccggaatta aagtatttgc caccggggga attggtggtg tgcatcgcgg ggcggaacat
     1321 accttcgata tttctgccga tttgcaagaa ctggcaaata ctaatgtcac cgttgtttgt
     1381 gccggggcga aatctattct cgatttagga ttaaccactg agtatttaga aaccttcggt
     1441 gtgccgttaa ttggctatca gactaaagcg ctgcctgcgt ttttctgccg taccagctcg
     1501 tttgacgtca gtattcgtct cgacagcgcc agtgaaattg cccgtgcaat ggcggtgaaa
     1561 tggcaaagcg ggctgaacgg tggcctcgtg gtagcgaacc cgatcccgga acagtttgcg
     1621 atgccggagg aatctatcaa tgcagccata gatcaagccg tcgccgaagc cgaagagcag
     1681 ggcgttattg gtaaagaaag tacactgttc ctgctggcgc gcgttgctga gctgaccggc
     1741 ggtgacagcc tgaaatccaa tatccagctg gtattcaaca acgccattct ggcgagtgaa
     1801 attgccaaag aataccagcg tctcgcgggt taatttccga cgggcagaaa gccgtcgccc
     1861 gtactcatca agcataccaa aacctggcgc tgacgccggg tttactggca tgaagggaaa
     1921 atcattatgg atataatgag aagtgttgtg gggatggtgg tgttactggc aatagcattt
     1981 ctgttgtcag tgaataaaaa gagcatcagt ttgcgcacgg ttggagccgc actgctgctg
     2041 caaatcgcta ttggtggcat catgctctac ttcccaccgg gaaagtgggc agtagaacag
     2101 gcggcattag gcgttcataa agtgatgtct tacagtgatg ccggtaggcc ttcatttttg
     2161 gttcgctggt tgggccgaaa atggatgtcc tgtttgacgg tgcgggtttt atcttcgcct
     2221 ttcgcgtact tccggcgatt attttcgtta ctgcgctcat cagtctgctg tactacattg
     2281 gcgtgatggg gctgctgatt cgcatccttg gcagcatttt ccagaaagct cttaacatca
     2341 gcaaaatcga atcttttgtc gcagtcacaa ctattttcct cgggcaaaat gagatcccgg
     2401 cgatcgttaa accgtttatc gatcgcatga atcgcaacga gttgtttacc gcaatttgta
     2461 gcgggatggc gtccattgct ggttcgatga tgattggtta tgccggaatg ggcgtaccaa
     2521 ttgactacct gttagcggca tcgctgatgg cgatcccagg tggtattttg tttgcacgta
     2581 ttcttagccc ggccaccgag ccttcgcagg tcacatttga aaatctgtcg ttcagcgaaa
     2641 cgccgccaaa aagctttatc gaagcggcgg cgagcggtgc gatgaccggg ctgaaaatcg
     2701 ccgctggtgt agcgacggtg gtaatggcat ttgtcgcaat tattgcgctg atcaacggca
     2761 ttatcggcgg aattggtggc tggtttggtt tcgccaatgc ctctctggaa agtatttttg
     2821 gctatgtgct ggcaccgctg gcgtggatca tgggtgtgga ctggagtgat gccaatcttg
     2881 cgggtagcct gattgggcag aaactggcga ttaacgaatt cgtcgcttac ctgagtttct
     2941 ccccatacct gcaaacgggc ggcacgctgg aagtgaaaac cattgcgatt atctcctttg
     3001 cgctttgtgg ttttgctaac tttggttcta tcggtgttgt cgttggcgca ttttcggcta
     3061 tttcgccaaa acgcgcgccg gaaatcgccc agcttggttt acgggcgctg gcagcagcaa
     3121 cgctttccaa cctgatgagt gcgactattg ccgggttctt tattggttta gcttgagttt
     3181 cattgccgga tgtacgcgct tattaagcgt tgcatccggc aat
//
LOCUS       DAJVSY010000260         3207 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.262, whole genome shotgun sequence.
ACCESSION   DAJVSY010000260 DAJVSY010000000
VERSION     DAJVSY010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3207
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.262"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..923)
                     /gene="curA"
                     /locus_tag="OQQ19_004090"
     CDS             complement(<1..923)
                     /gene="curA"
                     /locus_tag="OQQ19_004090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415966.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent curcumin/dihydrocurcumin
                     reductase"
                     /protein_id="HCS1805509.1"
                     /translation="MGQQKQRNRRWVLASRPHGAPVPENFRLEEDDVATPGEGQVLLR
                     TVYLSLDPYMRGRMSDEPSYSPPVDIGGVMVGGTVSHVVESNHPDYQPGDWVLGYSGW
                     QDYDISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATG
                     PVGATVGQIGKLKGCRVVGGAGGAEKCRHAIEVLGFDVCLDHHAGDFAEQLVKACPKG
                     IDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKR
                     IRLQGFIIAQDYGHRIHEFQKEMGQWVKEDK"
     gene            1104..1622
                     /gene="mddA"
                     /locus_tag="OQQ19_004091"
     CDS             1104..1622
                     /gene="mddA"
                     /locus_tag="OQQ19_004091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-methionine sulfoximine/L-methionine sulfone
                     acetyltransferase"
                     /protein_id="HCS1805510.1"
                     /translation="MSIRFARKADCAAIAEIYNHAVLYTAAIWNDQTVDADNRIAWFE
                     ARTIAGYPVLVSEEDGVVTGYASFGDWRSFDGFRHTVEHSVYVHPDHQGKGLGRKLLS
                     RLIDEARDSGKHVMVAGIESQNQASLHLHHSLGFVVTAQMPQVGTKFGRWLDLTFMQL
                     QLDERTEPDAIG"
     gene            1619..2068
                     /locus_tag="OQQ19_004092"
     CDS             1619..2068
                     /locus_tag="OQQ19_004092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1805511.1"
                     /translation="MNQSLTLAFLIAAGIGLVVQNTLMVRITQTSSTILIAMLLNSLV
                     GIVLFVSILWFKQGMAGFGELVSSVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAV
                     LVASQLIGGLMLDIFRSHGVPLRALFGPICGAILLVVGAWLVARRSF"
     gene            complement(2069..2302)
                     /locus_tag="OQQ19_004093"
     CDS             complement(2069..2302)
                     /locus_tag="OQQ19_004093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcY family protein"
                     /protein_id="HCS1805512.1"
                     /translation="MSHLDEVIARVDAAIEESVIAHMNELLIALSDDAELSREDRYTQ
                     QQRLRTAIAHHGRKHKEDMEARHEQLTKGGTIL"
     gene            complement(2388..2561)
                     /gene="ortT"
                     /locus_tag="OQQ19_004094"
     CDS             complement(2388..2561)
                     /gene="ortT"
                     /locus_tag="OQQ19_004094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415962.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orphan toxin OrtT"
                     /protein_id="HCS1805513.1"
                     /translation="MSLYQHMLVFYAVMAAIAFLITWFLSHDKKRIRFLSAFLVGATW
                     PMSFPVALLFSLF"
     gene            2756..2851
                     /gene="yncL"
                     /locus_tag="OQQ19_004095"
     CDS             2756..2851
                     /gene="yncL"
                     /locus_tag="OQQ19_004095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response membrane protein YncL"
                     /protein_id="HCS1805514.1"
                     /translation="MNVSSRTVVLINVFAAVGLFTLISMRFGWFI"
BASE COUNT          794 a          812 c          747 g          854 t
ORIGIN      
        1 attttatcct ctttcaccca ttgccccatc tccttctgaa actcatggat gcggtgacca
       61 taatcctgag cgataataaa cccttgcaag cgaatacgtt ttttcagcac cgttgccatc
      121 aacaggggta aacgatccgg accgggtggt agctctgtag cgttatagct gctcactaag
      181 ccacaaacgg gaatgcgcgc agatgtatta agtaatggta gcactgcatc aaatacctta
      241 ccgcccacgt tttcataata gatatcaata ccttttgggc acgctttcac cagttgttcg
      301 gcaaaatcac ccgcgtggtg atcaagacaa acatcgaagc ccagcacctc gatagcatgg
      361 cggcattttt ctgcgccacc ggcccccccc accaccctgc aacctttaag tttgccgatt
      421 tgccccaccg ttgctcccac aggacctgtc gccgcagcta ccaccaacgt ttcgccctct
      481 ttaggctgac cgatatccag cagccccata taagcggtaa agcctggcat ccccagcaca
      541 cccagcgacc acgatggatt ttgcggatga tcgccaagtt tcaccagatc atcaccactg
      601 gatatgtcat agtcctgcca tccactgtag cccagcaccc agtcgccagg ctgataatca
      661 ggatgattcg actccacaac atggctcacc gtgccgccga ccatcacgcc gccaatatca
      721 acaggcggtg aataagatgg ctcatcgctc atacgtccac gcatatacgg gtccagggac
      781 aaataaactg tgcgcagtaa cacctgtcct tcacccggtg tggcgacatc atcttcttca
      841 agacggaaat tctccggaac cggtgcgcca tgtggacgcg aggccagaac ccaacgtcga
      901 ttacgctgct tttgttgccc cataatgctc tcctgtgctt ttggcatgaa tccatcaata
      961 gtagcaggct cacgggattg gttttgtttg cagccgtcac atcccctctg caacacgcaa
     1021 taatttcatc gaggaatccg ttgcttcggg ctgttttcga tagtattgat aacatcatca
     1081 tcattatttt atcgaggcca gacatgtcca tccgttttgc ccgcaaagcc gattgtgctg
     1141 ccattgcgga aatttataac cacgccgtgt tgtatacggc ggctatctgg aatgaccaaa
     1201 cggttgatgc agataaccgc attgcctggt ttgaagcgcg gaccatagca ggttatccgg
     1261 tgctggtaag tgaagaagat ggcgtagtga cgggatatgc ctcgtttggc gactggcgta
     1321 gtttcgatgg ttttcgccat accgtggaac attcggttta tgtccatccc gatcatcagg
     1381 gcaaaggtct ggggcgtaaa ttgttaagcc gattgattga tgaagcgcgg gatagcggga
     1441 agcatgtcat ggtcgccggg atcgaatcgc aaaatcaggc ctcgctgcat ctgcaccatt
     1501 cgctgggatt tgtcgtcacc gcacaaatgc cgcaggtggg cactaaattt gggcgctggc
     1561 tggatctgac atttatgcag ttgcaactcg acgaacgcac tgaaccggac gcgattggat
     1621 gaatcagtcg ctcacccttg cttttttgat tgccgccgga attggtctgg tagtccagaa
     1681 cacgctgatg gtgcgcatca cccagacctc ctctaccatt ctcatcgcca tgttgctgaa
     1741 ctcactggtg gggattgtgc tctttgtttc tattttatgg tttaaacaag gcatggcggg
     1801 gtttggcgaa ctggtgtcca gcgtgcgctg gtggacactt atacccggct tgctgggatc
     1861 gttttttgtc ttcgccagta tcagcggata tcagaatgtg ggagcggcga caactattgc
     1921 agtactggtc gccagccagc taattggcgg tctgatgctg gatatcttcc gcagtcatgg
     1981 cgtaccacta cgggcgttgt tcggcccaat ttgtggcgca attttacttg tggttggcgc
     2041 ctggttggta gccagacgct cattttaatc agaggatggt gccgcctttg gttaactgtt
     2101 cgtggcgcgc ttccatatct tctttatgct tgcgaccgtg atgagcaata gcggtgcgca
     2161 aacgctgctg ctgggtgtag cgatcttccc gacttaactc cgcgtcatcg ctcagggcga
     2221 ttaataattc gttcatatgg gcaatgacgc tctcttcaat cgcggcatcc acgcgcgcga
     2281 tgacttcatc cagatgcgac atactttctc cttaaccact tgtgaaattt atcgattcat
     2341 ccaaatgata taagtctgcg tggtgccgtc aagccagtga gtaagattta aaacagtgaa
     2401 aacaacagcg ccaccgggaa actcatcggc catgttgccc ccaccagaaa ggcgcttaag
     2461 aaacggatgc gtttcttatc gtgagaaaga aaccaggtga taagaaatgc gattgctgcc
     2521 ataaccgcat aaaaaacaag catatgttga tagagagaca tgtacgggcg tccagccaga
     2581 tgaataaaac gcgcgcaaat atgcgtcatt ttttgacgtg catcaagttt tttcaccagt
     2641 ttgagaaaaa atcatcaaac agcaacttgc ccttatccat cttcagaatg agtattattg
     2701 cggattttct taacccgtac tatacacata ggggcaatga taaaaggtgg caaaaatgaa
     2761 tgtttccagt agaactgtag tactgataaa tgtctttgct gctgttggtt tgtttactct
     2821 tatctctatg agatttggct ggtttatttg atgtagtgat tttgcacgca gcacgtactg
     2881 tcagagaaat caactctctg acagtacgca agatcttctc atactctcca ggtttacaac
     2941 attatcctta atatttactt ctttttgctg gcatctacat tgaaatgagt agaaaacatc
     3001 cccctactgt cgtctataca aacagcttac tgattcaaac ggaatcttgt tttcacattt
     3061 ttctatcatg aatactttat acgcgcggga gtctataaat gctgaggtag cctgagttta
     3121 acggacactc cttcctgaaa tagaatggca tcagaaggag ctaataatga gcagaaaaaa
     3181 ccaacgttac tctaaagagt tcaaagc
//
LOCUS       DAJVSY010000261         3203 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.263, whole genome shotgun sequence.
ACCESSION   DAJVSY010000261 DAJVSY010000000
VERSION     DAJVSY010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3203
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.263"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            102..3005
                     /locus_tag="OQQ19_004096"
     rRNA            102..3005
                     /locus_tag="OQQ19_004096"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            3101..>3203
                     /gene="rrf"
                     /locus_tag="OQQ19_004097"
     rRNA            3101..>3203
                     /gene="rrf"
                     /locus_tag="OQQ19_004097"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT          853 a          701 c          991 g          658 t
ORIGIN      
        1 tcaagctgaa aattgaaaca ctgaacaacg aaagttgttc gtgagtctct caaattttcg
       61 caacacgatg atgaatcgta agaaacatct tcgggttgtg aggttaagcg actaagcgta
      121 cacggtggat gccctggcag tcagaggcga tgaaggacgt gctaatctgc gataagcgtc
      181 ggtaaggtga tatgaaccat tataaccggc gatttccgaa tggggaaacc cagtgtgatt
      241 cgtcacacta tcattaactg aatccatagg ttaatgaggc gaaccggggg aactgaaaca
      301 tctaagtacc ccgaggaaaa gaaatcaacc gagattcccc cagtagcggc gagcgaacgg
      361 ggagcagccc agagcctgaa tcagtgtgtg tgttagtgga agcgtctgga aaggcgtgcg
      421 atacagggtg acagccccgt acacaaaaat gcacatattg tgagctcgat gagtagggcg
      481 ggacacgtgg tatcctgtct gaatatgggg ggaccatcct ccaaggctaa atactcctga
      541 ctgaccgata gtgaaccagt accgtgaggg aaaggcgaaa agaaccccgg cgaggggagt
      601 gaaaaagaac ctgaaaccgt gtacgtacaa gcagtgggag cacgcttagg cgtgtgactg
      661 cgtacctttt gtataatggg tcagcgactt atattctgta gcaaggttaa ccgaataggg
      721 gagccgaagg gaaaccgagt cttaactggg cgttaagttg cagggtatag acccgaaacc
      781 cggtgatcta gccatgggca ggttgaaggt tgggtaacac taactggagg accgaaccga
      841 ctaatgttga aaaattagcg gatgacttgt ggctgggggt gaaaggccaa tcaaaccggg
      901 agatagctgg ttctccccga aagctattta ggtagcgcct cgtgaattca tctccggggg
      961 tagagcactg tttcggcaag ggggtcatcc cgacttacca acccgatgca aactgcgaat
     1021 accggagaat gttatcacgg gagacacacg gcgggtgcta acgtccgtcg tgaagaggga
     1081 aacaacccag accgccagct aaggtcccaa agtcatggtt aagtgggaaa cgatgtggga
     1141 aggcccagac agccaggatg ttggcttaga agcagccatc atttaaagaa agcgtaatag
     1201 ctcactggtc gagtcggcct gcgcggaaga tgtaacgggg ctaaaccatg caccgaagct
     1261 gcggcagcga cgctgatgcg ttgttgggta ggggagcgtt ctgtaagcct gtgaaggtgt
     1321 gctgtgaggt atgctggagg tatcagaagt gcgaatgctg acataagtaa cgataaagcg
     1381 ggtgaaaagc ccgctcgccg gaagaccaag ggttcctgtc caacgttaat cggggcaggg
     1441 tgagtcgacc cctaaggcga ggccgaaagg cgtagtcgat gggaaacagg ttaatattcc
     1501 tgtacttggt gttactgcga aggggggacg gagaaggcta tgttggccgg gcgacggttg
     1561 tcccggttta agcgtgtagg ctggttttcc aggcaaatcc ggaaaactaa ggctgaggcg
     1621 tgatgacgag gcactacggt gctgaagcaa caaatgccct gcttccagga aaagcctcta
     1681 agcatcaggt aacatcaaat cgtaccccaa accgacacag gtggtcaggt agagaatacc
     1741 aaggcgcttg agagaactcg ggtgaaggaa ctaggcaaaa tggtgccgta acttcgggag
     1801 aaggcacgct gatatgtagg tgaagtccct cgcggatgga gctgaaatca gtcgaagata
     1861 ccagctggct gcaactgttt attaaaaaca cagcactgtg caaacacgaa agtggacgta
     1921 tacggtgtga cgcctgcccg gtgccggaag gttaattgat ggggtcagcg caagcgaagc
     1981 tcttgatcga agccccggta aacggcggcc gtaactataa cggtcctaag gtagcgaaat
     2041 tccttgtcgg gtaagttccg acctgcacga atggcgtaat gatggccagg ctgtctccac
     2101 ccgagactca gtgaaattga actcgctgtg aagatgcagt gtacccgcgg caagacggaa
     2161 agaccccgtg aacctttact atagcttgac actgaacatt gagccttgat gtgtaggata
     2221 ggtgggaggc tttgaagtgt ggacgccagt ctgcatggag ccgaccttga aataccaccc
     2281 tttaatgttt gatgttctaa cgttgacccg taatccgggt tgcggacagt gtctggtggg
     2341 tagtttgact ggggcggtct cctcctaaag agtaacggag gagcacgaag gttggctaat
     2401 cctggtcgga catcaggagg ttagtgcaat ggcataagcc agcttgactg cgagcgtgac
     2461 ggcgcgagca ggtgcgaaag caggtcatag tgatccggtg gttctgaatg gaagggccat
     2521 cgctcaacgg ataaaaggta ctccggggat aacaggctga taccgcccaa gagttcatat
     2581 cgacggcggt gtttggcacc tcgatgtcgg ctcatcacat cctggggctg aagtaggtcc
     2641 caagggtatg gctgttcgcc atttaaagtg gtacgcgagc tgggtttaga acgtcgtgag
     2701 acagttcggt ccctatctgc cgtgggcgct ggagaactga ggggggctgc tcctagtacg
     2761 agaggaccgg agtggacgca tcactggtgt tcgggttgtc atgccaatgg cactgcccgg
     2821 tagctaaatg cggaagagat aagtgctgaa agcatctaag cacgaaactt gccccgagat
     2881 gagttctccc tgactccttg agagtcctga aggaacgttg aagacgacga cgttgatagg
     2941 ccgggtgtgt aagcgcagcg atgcgttgag ctaaccggta ctaatgaacc gtgaggctta
     3001 accttacaac gccgaaggtg ttttggcgga tgagagaaag attttcagcc tgatacagat
     3061 taaatcagaa cgcagaagcg gtctgataaa acagaatttg cctggcggcc gtagcgcggt
     3121 ggtcccacct gaccccatgc cgaactcaga agtgaaacgc cgtagcgccg atggtagtgt
     3181 ggggtctccc catgcgagag tag
//
LOCUS       DAJVSY010000262         3195 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.264, whole genome shotgun sequence.
ACCESSION   DAJVSY010000262 DAJVSY010000000
VERSION     DAJVSY010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3195)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3195)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3195
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.264"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            199..939
                     /locus_tag="OQQ19_004098"
     CDS             199..939
                     /locus_tag="OQQ19_004098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HCS1805515.1"
                     /translation="MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPV
                     YIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQ
                     LKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTG
                     ALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVN
                     GRYVVSKPLSHEVVQPQLASNYTLPEAK"
     gene            complement(910..1677)
                     /locus_tag="OQQ19_004099"
     CDS             complement(910..1677)
                     /locus_tag="OQQ19_004099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HCS1805516.1"
                     /translation="MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGK
                     GCRTFKDPQPSFNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRN
                     WTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIA
                     SLADELRQKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTT
                     PNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV"
     gene            complement(1883..2461)
                     /gene="lpcA"
                     /locus_tag="OQQ19_004100"
     CDS             complement(1883..2461)
                     /gene="lpcA"
                     /locus_tag="OQQ19_004100"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HCS1805517.1"
                     /translation="MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAG
                     GKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFS
                     RYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEI
                     RVPHFGYADRIQEIHIKVIHILIQLIEKEMVK"
     gene            2701..>3195
                     /gene="fadE"
                     /locus_tag="OQQ19_004101"
     CDS             2701..>3195
                     /gene="fadE"
                     /locus_tag="OQQ19_004101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414756.2"
                     /note="functions in fatty acid oxidation; converts
                     acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HCS1805518.1"
                     /translation="MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWS
                     AWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDL
                     FQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLK
                     EHRFF"
BASE COUNT          765 a          810 c          819 g          801 t
ORIGIN      
        1 atcttaggaa ataaatgata catgcgcttt tcggactatt gaaaactgcc cctgtgctaa
       61 atttgtaaac cctgcgccga caggcttgcg taaaactctt ttggtgataa tgtgagcctt
      121 ccaaatccag actattccga tttgggatcc attttgccgt cctggcgtgt gtaaccgttt
      181 tatcaaggaa taagcagtat gcgtaaaatc gcattaattc ttgcgatgtt gttgatcccg
      241 tgcgtttcgt ttgccggttt gctgggcagc agtagctcga ccacgccagt gagcaaagag
      301 tataagcagc agttgatggg atcccctgtc tacatccaga tcttcaagga agaacgtacg
      361 ctcgatctct acgtcaaaat gggcgagcaa tatcagctgc tcgacagtta taaaatctgt
      421 aaatattccg gcggcttagg gccaaaacag cgtcagggcg atttcaaaag cccggaaggg
      481 ttttatagcg tccagcgtaa tcagttaaaa ccagacagcc gttactacaa agcgattaat
      541 attggtttcc ccaatgccta tgaccgtgcg catggttatg aagggaaata cctgatgatc
      601 cacggcgatt gtgtttccat cggctgctac gcaatgacca atcagggtat tgatgagatc
      661 ttccagttcg ttactggtgc gctggtgttt ggtcagccga gcgtgcaagt gagtatttac
      721 ccgttccgca tgaccgacgc caatatgaag cgccataaat attccaactt taaggacttc
      781 tgggagcaac tgaagccggg ttacgactac tttgagcaaa cccgtaagcc accgaccgtt
      841 tctgtggtca atggtcgtta cgtggtcagc aagccgttaa gccacgaagt tgtgcagcca
      901 caactggcat caaactacac gctccccgag gcaaaataag cgccattcgc ctggcataat
      961 cttttgccag gtttcattgc ccgtcagcgg ctgtgtcgca atcaccgtga ccacatcatt
     1021 cggtgtggtc tgcgagctga agtcgatttc tacatcctga tccagcagcg ttgccacgcc
     1081 aaacggtgcg cggcgggtga tccagtgcag attcgtcgag caatacgcca ttacatagcg
     1141 cccatccgaa agcagcatgt tgaaaacgcc cttctgccgc agttcgtccg ccagtgaagc
     1201 gatatattta aacactgctg ccatgttgcc cggcgtgcgc gggtaacgct gcgttaattt
     1261 atgcagcagc cagcagaagg ctttttcgct gtcggtttcg cctaccgggc ggaagttgcc
     1321 ggtttccagt gatttgtagc ccgtcagttg tccgttatgg gcataagtcc agttacgccc
     1381 ccataactcg cgggtaaatg ggtgagtatt ttccaacgcc acctcgcccc gattagcctg
     1441 gcgaatatga gccaccaccg aacaggattt tatcgggtag tcctggacaa gtttggcgat
     1501 gggggaatta aagctgggtt gtggatcttt aaatgtgcga cagcctttac cttcgtaaaa
     1561 ggtaatgccc cagccatctt tatgtggccc ggttccacca ccacgctgta caagtccggt
     1621 gaaactaaag cagatatcgg tagggacgtt ggcgctcatc ccgagcaatt cgcacatggg
     1681 taacctccac aacagcggga gcgcatggcc cccggcgaag attgatttaa gaattttcag
     1741 gtcggatgcg gcgtaaacga attattcggc ctacggttcg cgtacagatt tgtaggcatg
     1801 ataagacgcg tcagcatcgc atcaggcatc agcgcacaag tgccggatgc ggcgtaaacg
     1861 ccttatccgg cctacgccag acttacttaa ccatctcttt ttcaattaac tggatcagga
     1921 tatggatcac tttaatgtga atctcctgaa tgcggtcggc ataaccaaag tgcggtacgc
     1981 gaatttcgat atccgccgtg ccagccattt tgccgccgtc tttaccggtc agggtgatca
     2041 ctttcatccc cttctcacgc gccgctgcga tcgctttgat cacgtttgca gagttaccgg
     2101 aggtggagat ccccagcagt acatcgcctt cgcgacctac cgcttcaacg tagcgggaga
     2161 aaatatcatt gaaaccgaaa tcattaccga cgcaggaaat atgactaacg tcagaaatag
     2221 caatcgccgg gtagcccgga cggttttcac ggtagcgacc ggtcaactct tcggcaaagt
     2281 gcatagcgtc gcaatgggaa ccgccgttgc cgcaggaaag cactttgcca ccggctttaa
     2341 agctgtctgc taacaggacc gccgcgcgct gaatggcgtg aatattggcg tcatctttta
     2401 aaaagttagc cagcgtttcc gccgcttcgt tcagttcgtt acgaataaga tcttggtaca
     2461 tgaggatatc cttcagcata aatgtaatag acaaaatgca gtgtaccgga taccgccaaa
     2521 agcgagaagt acgggcaggt gctatgacca ggactttttg acctgaagtg cggataaaaa
     2581 cagcaacaat gtgagctttg ttgtaattat attgtaaata cattgctaaa tgtatttaca
     2641 tccactacaa ccatatcatc acaagtggtc agacctccta caagtaaggg gcttttcgtt
     2701 atgatgattt tgagtattct cgctacggtt gtcctgctcg gcgcgttgtt ctatcaccgc
     2761 gtgagcttat ttatcagcag tctgattttg ctcgcctgga cagccgccct cggcgttgct
     2821 ggtctgtggt cggcgtgggt actggtgcct ctggccatta tcctcgtgcc atttaacttt
     2881 gcgcctatgc gtaagtcgat gatttccgcg ccggtatttc gaggtttccg taaggtgatg
     2941 ccgccgatgt cgcgcactga gaaagaagcg attgatgcgg gcaccacctg gtgggagggc
     3001 gacttgttcc agggcaagcc ggactggaaa aagctgcata actatccgca gccgcgcctg
     3061 accgccgaag agcaagcgtt tctcgacggc ccggtagaag aagcctgccg gatggcgaat
     3121 gatttccaga ttactcatga gctggcggat ctgccgccgg agttgtgggc gtaccttaaa
     3181 gagcatcgct tcttc
//
LOCUS       DAJVSY010000263         3193 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.265, whole genome shotgun sequence.
ACCESSION   DAJVSY010000263 DAJVSY010000000
VERSION     DAJVSY010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3193)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3193)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3193
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.265"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            88..1116
                     /gene="murB"
                     /locus_tag="OQQ19_004102"
     CDS             88..1116
                     /gene="murB"
                     /locus_tag="OQQ19_004102"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HCS1805519.1"
                     /translation="MNHSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVL
                     ILGEGSNVLFLEDYRGTVIINRIKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMP
                     GLENLALIPGCVGSSPIQNIGAYGVELQRVCAYVDCVELATGKQVRLTAKECRFGYRD
                     SIFKHEYQDRFAIVAVGLRLLKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKL
                     PDPKVNGNAGSFFKNPVVSAETAKALLAQFPTAPNYPQAGGSVKLAAGWLIDQCQLKG
                     MQMGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNVWLEPEVRFIGASGE
                     VSAVETIS"
     gene            1113..2078
                     /gene="birA"
                     /locus_tag="OQQ19_004103"
     CDS             1113..2078
                     /gene="birA"
                     /locus_tag="OQQ19_004103"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional biotin--[acetyl-CoA-carboxylase]
                     ligase/biotin operon repressor BirA"
                     /protein_id="HCS1805520.1"
                     /translation="MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLR
                     DWGVDVFTVPGKGYSLPEPIQLLNAEQILGQLDGGSVAVLPVIDSTNQYLLDRIGELK
                     SGDACVAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEV
                     LRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESV
                     VNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPV
                     KLIIGDKEIFGISRGIDKQGALLLEQDGIIKPWMGGEISLRSAEK"
     gene            complement(2107..3057)
                     /gene="coaA"
                     /locus_tag="OQQ19_004104"
                     /gene_synonym="panK"
     CDS             complement(2107..3057)
                     /gene="coaA"
                     /locus_tag="OQQ19_004104"
                     /gene_synonym="panK"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HCS1805521.1"
                     /translation="MSIKEQTLMTPYLQFDRNQWAAQRDSVPMTLSEDEIARLKGINE
                     DLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKS
                     TTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFV
                     SDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVF
                     VSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMT
                     LWKEINWLNLKQNILPTRERASLILTKSANHAVEEVRLRK"
BASE COUNT          875 a          691 c          807 g          820 t
ORIGIN      
        1 ctacaaactc tccctgtcgt cataactaca agccatcccc ccacagatac ggtaaactag
       61 cctcgttttt gcatcaggaa agcagctatg aaccactcct taaaaccctg gaacacattt
      121 ggcattgatc ataatgctca gcacattgta tgtgccgaag acgaacaaca attactcaat
      181 gcctggcagt atgcaaccgc agaaggacaa cccgttctta ttctgggtga aggaagtaat
      241 gtactttttc tggaagacta tcgcggcacg gtgatcatca accggatcaa aggtatcgaa
      301 attcatgatg aacctgatgc gtggtattta catgtaggag ccggagaaaa ctggcatcgc
      361 ctggtaaaat acactttgca ggaaggtatg cctggtctgg aaaatctggc attaattcct
      421 ggttgtgtcg gctcatcacc tatccagaat attggtgctt atggcgtaga attacagcga
      481 gtttgcgctt atgttgattg tgttgaactg gcgacaggca agcaagtgcg cttaactgcc
      541 aaagagtgcc gttttggcta tcgcgacagt atttttaaac atgaatacca ggatcgcttc
      601 gccattgtag ccgtaggtct gcgtctgcta aaagagtggc aacctgtact aacgtatggt
      661 gacttaactc gtctggatcc tacaacagta acgccacagc aagtatttaa tgcggtgtgt
      721 catatgcgca ccaccaaact ccctgatcca aaagtgaatg gcaatgccgg tagtttcttc
      781 aaaaaccctg ttgtatctgc cgaaacggct aaagcattac tggcgcaatt tccaacagca
      841 ccaaattacc cccaggcggg tggttcagta aaactggcag caggttggct tattgatcag
      901 tgccagctaa aagggatgca aatgggtggg gctgcggtgc accgtcaaca ggcgttagtt
      961 ctcattaatg aagacaatgc aaaaagcgaa gatgtggtgc aactggcaca ccatgtaaga
     1021 caaaaagtgg gtgaaaaatt taatgtctgg cttgagcctg aagtccgctt tattggtgca
     1081 tcaggtgaag tgagcgcagt ggagacaatt tcatgaagga taacaccgtg ccactgaaat
     1141 tgattgccct gttagcgaac ggtgaatttc actctggcga gcagttgggt gaaacgctgg
     1201 gaatgagccg ggcggctatt aataaacaca ttcagacact gcgtgactgg ggcgttgatg
     1261 tctttaccgt tccgggtaaa ggatacagcc tgcctgagcc catccagtta cttaatgctg
     1321 aacagatatt gggtcagctg gatggcggta gtgtagccgt gctgccagtt attgactcca
     1381 cgaatcagta ccttcttgat cgtatcggag agcttaaatc gggcgatgcc tgtgttgcag
     1441 aataccagca ggctggccgt ggtcgccggg ggcggaaatg gttttcgcct tttggcgcaa
     1501 acttatattt gtcgatgttc tggcgtctgg aacaaggccc ggcggcggcg attggtttaa
     1561 gtctggttat cggtatcgtg atggcggaag tattacgcaa gctgggagca gataaagttc
     1621 gtgtcaaatg gcctaatgac ctctatctgc aggatcgcaa gctggcaggc attcttgtgg
     1681 agctgactgg caaaactggc gatgcggcgc aaatagtcat tggagccggg atcaacatgg
     1741 caatgcgccg tgttgaagag agtgtcgtta atcaggggtg gatcacgctg caggaagcgg
     1801 ggatcaatct cgatcgtaat acgttggcgg ccatgctaat acgtgaatta cgtgctgcgt
     1861 tggaactctt cgaacaagaa ggattggcac cttatctgtc gcgctgggaa aagctggata
     1921 attttattaa tcgcccagtg aaacttatca ttggtgataa agaaatattt ggcatttcac
     1981 gcggaataga caaacagggg gctttattac ttgagcagga tggaataata aaaccctgga
     2041 tgggcggtga aatatccctg cgtagtgcag aaaaataaga aaggggagta ttcgctcccc
     2101 tgcaaattat ttgcgtagtc tgacctcttc taccgcatga ttagcacttt tcgtcaggat
     2161 taaactggcg cgctcacgag taggtagaat attttgcttt aagttcagcc agttgatctc
     2221 tttccacaat gtcatggcag tcttaatcgc ttcttcttta gttaatttcg cgtagttatg
     2281 aaaataggaa tccgggtcgg taaaagcccc ttcgcggaat ttcaggaaac ggttgatata
     2341 ccacgtctga agtaagtctt ccggtgcatc aacatatatc gaaaaatcga caaaatcaga
     2401 aacaaataca tgatgtggat cgtgtggata atccattccg ctctgtaaga catttaaccc
     2461 ttcaagaatt aaaatatcag gctgaacaac agttttatct ccatccggga tcacatcata
     2521 aataagatgc gagtaaacag gggctgtaac gtttggcacg ccggacttga gatcggaaac
     2581 aaacttcacc aggcgatgca tatcatacga ttccgggaag cctttcttct tcatcagacc
     2641 acgttctttc agaacctgat tagggtgaag gaagccatct gtagtgatca gttcaacacg
     2701 acgatgttcc ggccaacggc ttaatagcgc ctgcaataca cgggcggttg tacttttccc
     2761 caccgcgaca ctaccagcaa tactgataat gtaaggaatg cgttgcccgt tggtaccaag
     2821 aaactgttcc agaactgcct gacggcgcag attcgagctt atatagaagt tcagcaaacg
     2881 tgacagaggt aaatagatct cggcaacttc ttctaacgag agatcttcat taataccttt
     2941 gagacgggcg atctcatctt ccgataacgt cataggtacg gaatcacgct gagctgccca
     3001 ctggttgcgg tcaaactgta ggtaaggcgt cattaacgtt tgctctttta tactcataag
     3061 catgtttctg gcggtcatag ctctatcggc aaagcgatat ttgccatggc gcgtcacagt
     3121 tctgttgaat gggttaatgg gcaggagggt aacaccagat ggggaggaat aataagaaaa
     3181 aatctctcct agg
//
LOCUS       DAJVSY010000264         3173 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.266, whole genome shotgun sequence.
ACCESSION   DAJVSY010000264 DAJVSY010000000
VERSION     DAJVSY010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3173)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3173)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3173
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.266"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            345..504
                     /locus_tag="OQQ19_004105"
                     /pseudo
     CDS             345..504
                     /locus_tag="OQQ19_004105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001066419.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(722..2812)
                     /gene="iha"
                     /locus_tag="OQQ19_004106"
     CDS             complement(722..2812)
                     /gene="iha"
                     /locus_tag="OQQ19_004106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional siderophore receptor/adhesin Iha"
                     /protein_id="HCS1805522.1"
                     /translation="MRITTLASVVIPCLGFSASSIAAAEDVMIVSASGYEKKLTNAAA
                     SVSVISQEELQSSQYHDLAEALRSVEGVDVESGTGKTGGLEISIRGMPASYTLILIDG
                     VRQGGSSDVTPNGFSAMNTGFMPPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITRKN
                     ADKWLSSVNAGLNLQESNKWGNSSQFNFWSSGPLVDDSVSLQVRGSTQQRQGSSVTSL
                     SDTAATRIPYPTESQNYNLGARLDWKASEQDVLWFDMDTTRQRYDNRDGQLGSLTGGY
                     DRTLRYERNKISAGYDHTFTFGTWKSYLNWNETENKGRELVRSVLKRDKWGLAGQPRE
                     LKESNLILNSLLLTPLGESHLVTVGGEFQSSSMKDGVVLASTGETFRQKSWSVFAEDE
                     WHLTDALALTAGSRYEHHEQFGGHFSPRAYLVWDVADAWTLKGGVTTGYKAPRMGQLH
                     KGISGVSGQGKTNLLGNPDLKPEESVSYEAGVYYDNPAGLNANVTGFMTDFSNKIVSY
                     SINDNTNSYVNSGKARLHGVEFAGTLPLWSEDVTLSLNYTWTRSEQRDGDNKGAPLSY
                     TPEHMVNAKLNWQITEEVASWLGARYRGKTPRFTQNYSSLSAVQKKVYDEKGEYLKAW
                     TVVDAGLSWKMTDALTLNAAVNNLLNKDYSDVSLYSAGKSTLYAGDYFQTGSSTTGYV
                     IPERNYWMSLNYQF"
BASE COUNT          795 a          837 c          732 g          809 t
ORIGIN      
        1 gacctctcag taaatatcaa tacggttctg gcgagccgct tacgtgcagc agtcttatcc
       61 ggcagtttaa aggggaggac ggagaccaat gaggcactgg agcagattca gtgcagaggt
      121 gacctgcttt atcaaactta attgtgacaa aatggcgatt gagaaggtgc aattgactta
      181 tccggattcg gtcgtggcga ggtggtgccc ctgcattctg ctaaccgggt tatgagccag
      241 gagtcagcga tagacaaagg gacttatctg accgggcccc cggaaaaatg gcgggagaga
      301 atgatacctt cctgctgacg agaccggact ttgagatgac gagcgatagt gcggcagtga
      361 tgtacagcct gatcggtagc tgcaaaactt aacggaatcg agccggaaac gtggctacgc
      421 cacgtgatca gtgtaatcaa cacctggcct gccaaccgca tgaaagagtt gttgccctgg
      481 aacgtcactc tctctgtaaa ctaattttta ccccacgtcc ttcacggtgc gcttacactc
      541 tggacaagta tgtaaatgat aagttaaaaa taatccgtgc atttcctgtg acgatattag
      601 ttgttggtaa cgaaatctca ttagcggatc ggaaatgcac ttaacctaat acgttgccac
      661 tgttccgcca ggagttgcag tggcaacgta ttctaccgtc agtgatagcg ttttgttatt
      721 atcagaactg atagttcagc gacatccagt aatttcgctc aggtatcaca tatcctgttg
      781 ttgatgatcc cgtctggaag taatcaccgg catacagcgt actcttaccg gcactgtaca
      841 ggctcacgtc actgtaatcc ttgttgagca ggttattcac cgcagcattc agcgtcaggg
      901 catccgtcat cttccaggac agacctgcat ccaccaccgt ccaggctttc aggtattctc
      961 ctttctcatc atacactttc ttctgtacag cgctcagtga cgaataattc tgggtgaaac
     1021 gtggtgtttt cccgcgataa cgggcaccca gccatgatgc cacctcttcg gtgatctgcc
     1081 agttcagttt cgcattcacc atgtgttcag gggtataact cagcggcgca cctttgttat
     1141 caccatcacg ttgttcactt cgggtccagg tgtaattcag tgacagcgtg acatcctctg
     1201 accacagcgg caatgtgccg gcaaattcca caccgtgcaa ccgggccttt ccgctgttta
     1261 catagctatt ggtgttatca tttatggaat aagagacaat cttgttggag aagtcagtca
     1321 taaaacctgt gacattggca ttcagaccgg cggggttatc gtaatacacc ccagcctcat
     1381 aactgacgct ctcttccggc ttcaggtcgg ggttaccaag tagatttgtt tttccctgcc
     1441 cggacacacc actaatccct ttatgtagct gccccattct gggtgcctta tatcccgtgg
     1501 tcacaccgcc tttcagcgtc caggcatctg ccacatccca gaccagatat gcacgcggac
     1561 tgaagtgtcc cccgaattgc tcatgatgtt catagcggct gcccgcagtc agcgcaagtg
     1621 catccgtgag atgccactca tcctcagcaa ataccgacca gcttttctgc cggaaagttt
     1681 cacctgtgct ggcaaggaca actccgtctt tcatggacga gctctgaaac tcgcccccca
     1741 ccgtaaccag atgagattct cccagagggg taagcagtaa tgaattcagg ataaggttcg
     1801 attccttaag ctcccgcggc tgaccggcaa gcccccattt gtcgcgcttc agtacactgc
     1861 gtacgagctc acgaccttta ttttctgtct cgttccagtt cagatacgat ttccatgttc
     1921 cgaaggtgaa agtatgatca tagccagctg aaattttgtt ccgctcatag cgcagggtcc
     1981 ggtcatatcc ccccgtcaga ctccccagtt gcccatcccg gttatcataa cgctgccggg
     2041 tggtatccat atcaaaccag agcacatcct gctccgacgc cttccagtca agacgtgcac
     2101 caagattata attctgtgac tccgtgggat aaggaatacg cgtggctgct gtatcgctca
     2161 gtgatgtgac cgatgagccc tgacgctgtt gtgtgctacc gcgtacctgc aggctgacag
     2221 aatcatccac aagggggcca ctgctccaga aattaaactg gctgctgtta ccccatttgt
     2281 tgctttcctg cagattcagc cctgcattga cggaagagag ccatttgtct gcattctttc
     2341 tggtaatgat attcaccaca ccgcccatcg catcagagcc atacagtgtg gacatcggcc
     2401 ccctgataac ctcaatacgc tcaatggcgg ccagaggggg catgaacccg gtattcatgg
     2461 cagaaaaacc gttgggagtc acgtcactgc ttccgccctg acgaacacca tcaatcagta
     2521 tcagcgtgta actggctggc attcctcgga tgctgatttc cagcccaccg gttttacccg
     2581 taccactttc aacatccaca ccctctactg atctcagagc ctccgccaga tcgtggtact
     2641 ggctggactg caattcctcc tggctaatca cagaaacact ggcggctgcg ttagtcagct
     2701 ttttctcata gccggatgcc gagacaatca tcacatcctc tgcagcagct atgctgctgg
     2761 ctgaaaatcc gagacaggga atgactacgg aagccagagt ggttattcgc atattactaa
     2821 tctccgatca tgttaaccgg caagacaata cacaaataca aacaataatg agaataattt
     2881 atatttgcct tttacaaaaa ataaagatta ttaacaaaac taaatataaa taacaactgc
     2941 ctcggcatgc cagttaacag ctatccgtat ggcgtgttcg gttttgcgaa taaaaaatgg
     3001 ttactgtaga agcggatttc caccacatgt caaccatgaa tggtcagtgg tgcgagacga
     3061 ctgggatgat ttggtcgatg acttcttccg gtgaatactg atagaaacat tgaaatattg
     3121 taagagaaag cgttcaaaat tctgtggcac gtgaaaaatt ctacagcgtc atc
//
LOCUS       DAJVSY010000265         3145 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.267, whole genome shotgun sequence.
ACCESSION   DAJVSY010000265 DAJVSY010000000
VERSION     DAJVSY010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3145)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3145)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3145
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.267"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..141
                     /locus_tag="OQQ19_004107"
     CDS             <1..141
                     /locus_tag="OQQ19_004107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308592.1"
                     /note="activator of the allDC-ylbA operon involved in
                     allantoin utilization; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator AllS"
                     /protein_id="HCS1805523.1"
                     /translation="MRPPSPLSLAWRKFGSGKAVEDIVTLFTQRRPEISGFLEIFGNP
                     RS"
     gene            210..1304
                     /gene="mnmH"
                     /locus_tag="OQQ19_004108"
     CDS             210..1304
                     /gene="mnmH"
                     /locus_tag="OQQ19_004108"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HCS1805524.1"
                     /translation="MQERHTEQDYRALLIADTPIIDVRAPIEFEQGAMPAAINLPLMN
                     NDERAAVGTCYKQQGSDAALALGHKLVAGEIRQQRIDAWRAACLQNPQGILCCARGGQ
                     RSHIVQSWLHAAGIDYPLVEGGYKALRQTAIQATIELAQKPIVLIGGCTGSGKTLLVQ
                     QQPNGVDLEGLARHRGSAFGRTLQPQLSQASFENLLAAEMLKTDARQDLRLWVLEDES
                     RMIGSNHLPECLRERMTQAAIAVVEDPFEIRLERLNEEYFLRMHHDFTHAYGDEQGWQ
                     EYCEYLHHGLSAIKRRLGLQRYNELAAQLDTALTTQLTTGSTDGHLAWLVPLLKEYYD
                     PMYRYQLEKKAEKVVFRGEWAEVAEWVKAR"
     gene            1420..1785
                     /locus_tag="OQQ19_004109"
                     /pseudo
     CDS             1420..1785
                     /locus_tag="OQQ19_004109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014543172.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            complement(2347..2796)
                     /locus_tag="OQQ19_004110"
     CDS             complement(2347..2796)
                     /locus_tag="OQQ19_004110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001348602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805525.1"
                     /translation="MLAISSNLSKMIIFIFAIIIIVVLCVITYLYLYKDESLVSKHYI
                     NYMAIPENDGVFTWLPDFFSHVAVDISIYTNVEDDYFFSYFSLTNDDGGRFKKTLTVR
                     AREQVAKIVSKNDPDTKKVWCKYGKIPGQGDGVNLFLLVKLMLRIIL"
     gene            complement(2777..3145)
                     /locus_tag="OQQ19_004111"
                     /pseudo
     CDS             complement(2777..3145)
                     /locus_tag="OQQ19_004111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308587.2"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="RHS repeat-associated core domain-containing
                     protein"
BASE COUNT          841 a          727 c          712 g          865 t
ORIGIN      
        1 atgcgccctc cttcgccatt gagtctggca tggcgcaaat ttggcagcgg caaagcggta
       61 gaagatattg tgaccttgtt tacccagcgc aggccggaaa tcagcggatt tttagaaatt
      121 ttcggcaacc cacgcagtta aaaatcaagt ttccttgcgc gttggcgcgt aaaatagcgc
      181 gcaagctgat ttgaggttca cttttaacta tgcaagagag acacacggaa caggactatc
      241 gtgccctgct gattgctgat acgcccatta ttgatgttcg cgcccctatc gagtttgagc
      301 aaggcgcaat gcccgccgct atcaatctgc cgttaatgaa taacgatgaa cgcgccgccg
      361 ttggcacctg ctataaacag caagggtcag acgcggcgct ggcgctgggg cataaactgg
      421 tggcgggtga aattcgtcag cagcgcatag acgcctggcg ggcagcgtgc ctgcaaaatc
      481 cgcaaggtat tctctgctgt gcccgtggcg gtcaacgctc acatattgtg caaagctggt
      541 tgcatgcagc ggggattgat tatccgctgg tggaaggcgg ttataaggca ctgcgccaga
      601 ccgcgattca ggcgactatt gaactggcac aaaaaccgat agtgctgatt ggcggttgta
      661 ccggcagcgg taaaacgctg ttagtgcagc aacagccgaa cggtgtcgat ctggaagggc
      721 tggcgcgtca tcgcggttcg gcgtttggtc gcacgttaca accacaactt agccaggcga
      781 gttttgaaaa tctgctggct gccgaaatgc taaaaaccga cgcccgtcag gatttgcgcc
      841 tgtgggtgct ggaagatgaa agccggatga tcggttcgaa tcacctgccg gaatgtctgc
      901 gcgagcgaat gactcaggcg gcgattgcgg tggtagaaga tccgtttgag atccgtcttg
      961 aacgcctgaa cgaagagtat ttcttgcgta tgcatcatga ttttacccac gcgtacggcg
     1021 acgaacaggg ctggcaggaa tattgcgaat acctgcatca cggactttcg gctattaagc
     1081 gtcggctggg gttacagcgc tataacgaac tcgctgccca gctggatacg gcgctgacaa
     1141 cgcaactcac caccggcagc accgacggtc atctggcctg gctggtgccg ttacttaaag
     1201 aatattacga cccaatgtat cgctatcagc ttgagaaaaa agcggaaaaa gttgtctttc
     1261 gcggtgagtg ggcggaagtg gcggaatggg ttaaggcgcg gtaatgaggg acgtatttgt
     1321 attagtcgcg acttgatctg acacatggcc ttgaaaggtt gagagttacc ggttttgata
     1381 tgagtgtcga atccttatcc aaaacaagag gtaactctca tgcttcatac tgccaatccc
     1441 gtcatcaaac acaaagccgg tttgctcaat ctggctgaag aactcagcaa cgtatcaaaa
     1501 gcctgtaaaa tcatgggcgt ttcgcgtgat acgttttatc gttaccgcga actggtcgct
     1561 gaaggcggtg tggatgcgca gattaatcgt agtcgccgcg ctcctaacct taagaaccgt
     1621 accgatgagg caactgaaca ggctgttgtt gattacgccg tcgctttccc gacacatggt
     1681 cagcaccggg ccagcaacga gctgcgtaaa caggggggtt ttatctccga cagtggtgtc
     1741 cgttctgtct ggttactcca taaccttgag aatctcaaaa gacgatactg aacaaatttt
     1801 atcaggtgac gttccgtaaa aagttgtatg gagttctcga tgcagtcggc gcgactatca
     1861 gtacccccgc tgaaccctgg actatcgggc cgccgtactg gggcatgtca ccctggcgtg
     1921 ccgctggttt tccgctaatg gtttatttcc tctttctttc ccggcaagaa tttattttaa
     1981 tccggaagga ttatttattt tcagataggg actcacatta aacacgtaac attttaatta
     2041 atgcatggct gaatatgtat tacacaatgt cagatatcgt aaaagaccag tgcaattcta
     2101 tgtaaactct ctgactgttc attttatttg ttgtttcagg gtcggaactc accctcaata
     2161 aacaactgaa tacgagtaga tattcatcgt ctgagctata tggctttaca caatagccga
     2221 catgtctttt ctcagtcagg aattttactt ttcctcacta cgaagttgac gacttcgata
     2281 tgggatagac tcttaattca agcaattact ctgcacaagc atcaggcaat ccagctccaa
     2341 tatttgttat aaaataatgc gtaacattaa tttcaccaac aaaaaaaggt ttacaccatc
     2401 cccttgccct ggtatcttac catatttaca ccacactttt tttgtatctg gatcattctt
     2461 tgatacgatt ttcgccactt gttccctggc cctcactgtc aatgttttct taaacctacc
     2521 cccatcatca tttgttaggg aaaaataaga aaaaaaataa tcatcttcta catttgtgta
     2581 tattgatata tccaccgcta cgtgcgaaaa aaaatctggg agccatgtaa aaactccatc
     2641 attttctggt attgccatat agtttatgta atgtttactt acaagagatt catctttgta
     2701 taaataaaga taagtaatta cgcataaaac aacaatgatt ataatagcaa aaataaatat
     2761 tatcatcttt gatagattac ttgagatagc cagcatcttg taaagccttt atcgtttttt
     2821 tatgctctgg attaatataa tcactacatc tatctgagca atctgttgtt gatggacatg
     2881 tcaacccatg gtcatttaca gccaagtctt ttttattatc ttcaatcatt tcagaatggg
     2941 atagctttac ttttctgccg tacataccga acagatttaa tccgtaatct ctaatctctt
     3001 tttcataacc cagccctttc gccgatcggc taacaccagc gtcatttaat ttagacactc
     3061 gacaaaatgc catacaatgg aaaaattgat cagtcccacc taaatttaat ctcttcataa
     3121 gtatcagata atatatccca tgctc
//
LOCUS       DAJVSY010000266         3086 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.268, whole genome shotgun sequence.
ACCESSION   DAJVSY010000266 DAJVSY010000000
VERSION     DAJVSY010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3086)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3086)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3086
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.268"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..190)
                     /locus_tag="OQQ19_004112"
     CDS             complement(<1..190)
                     /locus_tag="OQQ19_004112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF898 family protein"
                     /protein_id="HCS1805526.1"
                     /translation="MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLP
                     WALMKCKRYLYANMEVNGQ"
     gene            383..885
                     /locus_tag="OQQ19_004113"
                     /pseudo
     CDS             383..885
                     /locus_tag="OQQ19_004113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026287.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            complement(931..1347)
                     /gene="rraB"
                     /locus_tag="OQQ19_004114"
     CDS             complement(931..1347)
                     /gene="rraB"
                     /locus_tag="OQQ19_004114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HCS1805527.1"
                     /translation="MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLE
                     TLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAE
                     KFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH"
     gene            1509..2513
                     /gene="argF"
                     /locus_tag="OQQ19_004115"
     CDS             1509..2513
                     /gene="argF"
                     /locus_tag="OQQ19_004115"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HCS1805528.1"
                     /translation="MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLT
                     GKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYD
                     GIQYRGYGQEIAETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLV
                     YAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTED
                     VAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLP
                     AFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
                     "
     gene            complement(2585..3067)
                     /locus_tag="OQQ19_004116"
     CDS             complement(2585..3067)
                     /locus_tag="OQQ19_004116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012565194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805529.1"
                     /translation="MIWDKLVAYVNDFNLSNQEKSRLILRLFDDVKLLFNEVPVSILV
                     NDIFLKDFFMKQPDFAKWYFYQLLKKYEGEQLYLNELGYVYGNEEKTNEIVNNNPGYV
                     VEIFEEKMGNELKIRTRMMEILRDGKINICEYINKEQLEKLNPPEDLRIAIKKLGWNN
                     "
BASE COUNT          864 a          700 c          659 g          863 t
ORIGIN      
        1 gttgtccgtt aacttccata ttagcataga gataacgctt acatttcatt aatgcccatg
       61 gtaaatagat acctagcgtt ataatcgtta acaacacatt caccacacaa ataagaaaat
      121 atctctcacc tgtaccatga aaaacaaacg aatgggacgg aacatccatt tcattaataa
      181 cttgagccat aaaaattccc tgaattaaaa aatccattga tataatttat atatacagac
      241 agtaaaatgt tctgccacgt tacaatactc ttatcagtaa taggctggca aaaactttat
      301 tgctttataa gatgcttgcg cacgtaagaa gagagtggta ttaaacaaat gtataattac
      361 tttattttta ttgggttaaa ctatgaataa cattgcgccg caatcacctg taatgcgtcg
      421 cctgacgcta caggataatc ctgctattgc ccgcgtcatt cgtcaggtat ccgccgaata
      481 cggtcttacc gctgataaag gctacaccgt cgccgatccg aatcttgacg aactgtatca
      541 agtgtatagt cagccgggtc atgcatattg ggtggttgag tacgagggtg aagtggtcgg
      601 cggcggtggg attgcgccat tagcaggtag tgaatcggac atttgcgaac tgcaaaagat
      661 gtattttctt ccggctattc gcggtaaagg gctggcgaaa aaactggcct taatggtgat
      721 ggagcaggca cgagagatgg gcttcaaacg ctgctatctg gaaacgaccg ctttttaaag
      781 gaagccattg cgctttatga gcatttgggc tttgagcata tcgactatgc acttggctgc
      841 acgggccatg ttgattgtga agtgcggatg ttgcgcgaac tctaaaaaaa tgcccgctag
      901 tgtgtgctat cgggcatttt aatcaattaa ttagtggcga accccgtcat cgtcttcatc
      961 gacaaaatct tcatcgtcgc cgtcttcgcc attaggatct tcaaaataag tgccccaacc
     1021 gtcgtactca acgtcaaatt tctccgccaa tgtcatcagt tgttcaacct gggcatcgat
     1081 cagatcggca ttcaacgcgc actcgctgag gatgtcgcag caaatcacga tatcaccatc
     1141 ttcaacttcc agctcttctg gatcggtcac ttcgtaaccg agtttaaacg cttcaactgc
     1201 tgctttttcc agggtttcca gatcgtctgc ggaaagatgg tgttcgatgg tgtacagcgc
     1261 gtccggatcg ctgccatctt ccagtaattc ttcaataatc aaacgagttt cttcacgctg
     1321 ttcttccagt tgttccgggt ttgccatggc tcattcctct taatgtcctg ccgatactct
     1381 tattgtcaca taccactgac attgcctcca cctttgtgac aaagatttat gctttagact
     1441 tgcaaatgaa taatcatcca tataaattga attttaattc attgaggcgt tagccacagg
     1501 agggatctat gtccgggttt tatcataagc atttcctgaa attactcgat ttcacgccag
     1561 ctgaactcaa cagcctgctg cagttagccg cgaagctgaa agccgataag aaaagcggca
     1621 aagaagaagc caaactcact ggtaaaaaca tcgcgctcat cttcgaaaaa gactcgaccc
     1681 gtacccgatg ctctttcgaa gttgccgcat atgaccaggg tgctcgcgtt acttatctcg
     1741 gcccaagcgg cagtcagatt ggtcataaag agtcgattaa agacactgcc cgcgtgctgg
     1801 gtcgcatgta tgacggtatt cagtatcgcg gctatggtca ggagattgcc gaaacactgg
     1861 cggaatacgc tggcgtgccg gtatggaacg gcctgaccaa tgagtttcac cccacgcagt
     1921 tgctggcgga tctcctcacc atgcaggagc atttacccgg taaagcattc aacgaaatga
     1981 cgctggtcta tgcaggtgac gcacgtaaca acatgggcaa ttcgatgctc gaagctgcgg
     2041 cgcttaccgg tctggatttg cgtctggtcg cgccacaggc atgctggccg gaagctgcgc
     2101 tggttacgga atgccgcgcc ctggcacagc aaaatggcgg gaatattacg ctgacggaag
     2161 atgtagccaa aggagttgaa ggtgctgact ttatctatac cgatgtatgg gtgtcgatgg
     2221 gggaagcaaa agagaaatgg gcagaacgga ttgcattact gcgtgattat caggtgaaca
     2281 gcaagatgat gcagttgacc ggtaacccgg aggtcaaatt cctccactgc ctgcccgcgt
     2341 ttcatgacga ccagacgacg cttggtaaga aaatggcgga agagtttggc ctacatggcg
     2401 gaatggaagt gactgatgag gtcttcgaat ctgccgccag cattgttttt gatcaggcgg
     2461 aaaaccgcat gcataccatc aaagcggtga tggtcgcgac gctcagtaaa taattgatat
     2521 cgcaataaag atgccgggaa atacaaaaac atcccggcat cacattattt tatgcagtaa
     2581 tagttcaatt attccacccc aattttttta ttgctatacg taaatcttcc ggaggattta
     2641 atttttctaa ctgttcttta ttaatatatt cacatatatt tattttccca tcccggagga
     2701 tttccatcat tcttgttcta atttttaatt cattacccat cttttcttca aaaatctcaa
     2761 cgacataacc cggattgtta tttacaattt catttgtttt ttcttcatta ccataaacat
     2821 atcctaactc attaagatac agctgttcgc cctcatactt cttaagtaat tgatagaagt
     2881 accacttcgc aaaatcaggt tgcttcatga aaaaatcctt caaaaaaata tcatttacta
     2941 aaatgctgac aggcacttca ttaaatagca acttaacatc atcaaataac cttagtatta
     3001 agcgtgattt ttcttgattg cttaagttaa aatcattgac atatgcaacc aacttatccc
     3061 aaatcaattc ctgtaattta cggcta
//
LOCUS       DAJVSY010000267         3064 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.269, whole genome shotgun sequence.
ACCESSION   DAJVSY010000267 DAJVSY010000000
VERSION     DAJVSY010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3064)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3064)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3064
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.269"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(48..232)
                     /locus_tag="OQQ19_004117"
                     /pseudo
     CDS             complement(48..232)
                     /locus_tag="OQQ19_004117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311258.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
     gene            complement(394..468)
                     /locus_tag="OQQ19_004118"
     tRNA            complement(394..468)
                     /locus_tag="OQQ19_004118"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(433..435),aa:Arg,seq:cct)
     gene            complement(544..1476)
                     /locus_tag="OQQ19_004119"
     CDS             complement(544..1476)
                     /locus_tag="OQQ19_004119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HCS1805530.1"
                     /translation="MDNDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHI
                     RQDGEKELERDAMALLWSAIAAGLSMGASLLAKGIFHVELEGVPGSFLLENLGYTFGF
                     IIVIMARQQLFTENTVTAVLPVMQKPTMSNVGLLMRLWGVVLLGNILGTGIAAWAFEY
                     MPIFNEETHDAFVKIGMDVMKNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIIL
                     MTWLIALGDTTHIVVGSVEILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMS
                     HAQIRNDMSNKRKAEARQKAERAENIKKNDKNPA"
     gene            1770..2525
                     /gene="mlaA"
                     /locus_tag="OQQ19_004120"
     CDS             1770..2525
                     /gene="mlaA"
                     /locus_tag="OQQ19_004120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding lipoprotein MlaA"
                     /protein_id="HCS1805531.1"
                     /translation="MKLRLSALALGTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNF
                     NVLDPYIVRPVAVAWRDYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTR
                     FFLNTILGMGGFIDVAGMANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRD
                     DGGDMADGLYPVLSWLTWPMSVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYF
                     QRHDFIANGGELKPQENPNAQAIQDDLKDIDSE"
     gene            complement(2707..3042)
                     /locus_tag="OQQ19_004121"
     CDS             complement(2707..3042)
                     /locus_tag="OQQ19_004121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001315756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805532.1"
                     /translation="MAESFATGSDHQVVNELNGERLREPNEVFKRLGRAIRYNFQVDD
                     AKFRRDNVKEIISTLFANKVDVDHPENKYKDFKDLEDKVEKRLQNRQTEYQNEINQLS
                     APGVNFDDI"
BASE COUNT          766 a          705 c          712 g          881 t
ORIGIN      
        1 atcttttacg gggtgaaggt agatttcgta tgaagggtat ctgttgtctc ctgcaaagtc
       61 ataagcggat attttcctac ggtcagtatt tttttcttac cgtcaatctt gtagcgaagt
      121 tgccatacct tttcccggat acaggaacat aaaggtacag gccattacca tcgagaaggc
      181 ggtatggttt ttctttcggc tttgctgctt caatctgctt aacggtgagc atgggtaaaa
      241 atccggtggg taaaattatt ttatccactt tttacccgtc atggagtgcg gctgtcaacg
      301 atctgacgcg aaccatgacg aaccgtgaat atacggaagg cttgatattc aggggatttt
      361 gcggactggt acggatggga gcgaactgat aaatggtgtc ccctgcagga atcgaacctg
      421 caattagccc ttaggagggg ctcgttatat ccatttaact aagaggacaa tgcggcatga
      481 gtatacccgc taatggactg cggagtaagt acactgccgc tcgattgctt aaaccctcgc
      541 catttatgct gggtttttat catttttctt aatgttttcc gcacgttctg ctttttggcg
      601 tgcttctgct ttgcgcttgt tgctcatgtc gttacggatc tgtgcatgac tcattaacgc
      661 gaagataaag gtgccgccgc agatattccc cgctaaagta ggtagtgcga agggccaaat
      721 gaaatcgctc cagtgcagcg tgccgttaaa caccagatag aggatttcta cagaaccgac
      781 aacgatgtgg gtggtgtcac ccagtgcaat aagccaggtc atcaatataa tcaccacaat
      841 ctttgccgca cccgctgcag gaaacatcca aaccatagtg gcgatcagcc agccggaaat
      901 gatcgcgttg gcaaacatct cgctgggggt gttcttcatc acatccatgc cgattttgac
      961 aaatgcatcg tgagtttctt cattgaagat aggcatatat tcaaatgccc atgcagcaat
     1021 acctgtcccg agaatattac ccagcagcac gacgccccat aatcgcataa gtaagccgac
     1081 gttgctcatt gtcggttttt gcatgacggg tagtaccgca gtcacggtgt tttcggtaaa
     1141 taattgctgg cgggccataa tgacgataat aaaaccaaag gtataaccga gattctccaa
     1201 caagaagctg cccggcacgc cttccagttc gacatgaaat atcccttttg ccagtaacga
     1261 agcgcccatc gacagacccg ccgcaatggc tgaccacagt agtgccattg cgtcgcgttc
     1321 cagctctttt tcaccatcct ggcggatatg ttcatgaatt gccatcgccc gggaggggag
     1381 tcgatcttca tctatttcta tttttttgcc gcgctctttt tcttcgctct caacttcaat
     1441 ttcgtcgctg tgttgatcaa ttttgtcgtt gtccatggtc tcttctcttg aattagcacg
     1501 tatagctaaa gcgtagcggc ttttttgctc gcaactggcg ggagttactc tgaaaatgta
     1561 gaaaaggccg cgtttgcctt tttctgtttc tatagaatca agtagcctac agggcggcga
     1621 ttaccaggct atgatcaaat cagcaaatca gggcgtctgg acatcagttg acgtgctgtt
     1681 acaatcgccc acacctaaac aggcggatac ggtatcgttc cgtcatggat ggcaaactgc
     1741 ataagccata aaaaaacagg gagacattta tgaagcttcg cctgtcggcg cttgctctgg
     1801 gaactacgct tctggtgggg tgtgcgagtt ccggtacaga tcagcaaggg cgttctgacc
     1861 cgttagaagg gttcaaccgc accatgtaca acttcaactt caatgtatta gacccgtata
     1921 ttgttcgacc ggtcgctgtc gcctggcgtg attatgttcc gcaaccggcg cgtaacggtt
     1981 tgagcaactt taccggcaac cttgaagaac ctgcggtgat ggttaactac ttcttgcagg
     2041 gcgaccctta tcaggggatg gtccacttta cccgcttttt cctgaacacc attttgggga
     2101 tgggcggctt tattgatgtt gcagggatgg cgaacccgaa actgcaacgg actgaacctc
     2161 accgcttcgg tagtacgctt ggtcattatg gcgtgggtta tgggccttac gttcagttac
     2221 cgttctacgg tagcttcacg ctgcgtgatg acggtggtga tatggcggat ggtctttacc
     2281 cggttctttc ctggctgacc tggccgatgt ctgtgggtaa atggacgctt gaagggatcg
     2341 aaacccgcgc tcagctgctg gattccgatg gtctgctgcg tcagtcgtcc gatccttata
     2401 ttatggtgcg cgaagcgtac ttccagcgtc atgatttcat cgctaatggc ggcgaactca
     2461 aaccgcagga aaatccgaac gcacaagcga ttcaggatga tttaaaagat attgattctg
     2521 aataagaaac aaataaaaaa ggtgagtcgc aaaactcacc ttttttgttg ttatccctca
     2581 attaccacaa gtaaaaggag ataaaccgac aatgacccgg acgtaatgat gtaaaaatac
     2641 tgatgttcgt cactgactat ttccgatatt caggcgttga aaaatcaaaa aactggaaaa
     2701 ataattttaa atatcatcaa aattaacacc tggcgcagat agttgattaa tttcattttg
     2761 atattccgtc tggcgatttt gaagcctttt ttcaacttta tcttcgagat ccttaaagtc
     2821 tttgtattta ttttcaggat ggtcaacgtc aactttgtta gcgaataaag tagaaattat
     2881 ttcttttaca ttatcgcgtc taaattttgc atcgtccact tgaaaattat atcttattgc
     2941 tcgacctaaa cgtttaaaaa cttcgttagg ttctctcagt ctttccccgt tgagctcgtt
     3001 tacaacctga tgatcggaac ctgttgcaaa tgattctgcc atgatagctt tactgctttc
     3061 aaac
//
LOCUS       DAJVSY010000268         3000 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.270, whole genome shotgun sequence.
ACCESSION   DAJVSY010000268 DAJVSY010000000
VERSION     DAJVSY010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3000)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3000)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3000
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.270"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            278..538
                     /gene="repA"
                     /locus_tag="OQQ19_004122"
     CDS             278..538
                     /gene="repA"
                     /locus_tag="OQQ19_004122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication regulatory protein RepA"
                     /protein_id="HCS1805533.1"
                     /translation="MSQTENAVTSSLSQKRFVRRGKPMTDSEKQMAAVARKRLTHKEI
                     KVFVKNPLKDLMVEYCEREGITQAQFVEKIIKDELQRLDILK"
     gene            762..836
                     /gene="tap"
                     /locus_tag="OQQ19_004123"
     CDS             762..836
                     /gene="tap"
                     /locus_tag="OQQ19_004123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001370046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RepA leader peptide Tap"
                     /protein_id="HCS1805534.1"
                     /translation="MPGKVQDFFLCSLLLRIVSAGWCD"
     gene            829..1686
                     /gene="repA"
                     /locus_tag="OQQ19_004124"
     CDS             829..1686
                     /gene="repA"
                     /locus_tag="OQQ19_004124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858393.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="incFII family plasmid replication initiator
                     RepA"
                     /protein_id="HCS1805535.1"
                     /translation="MTDLQQTYYRQVKNPNPVFTPREGARTLPFCGKLMEKAVGFTSR
                     FDFAIHVAHARSLGLRRRMPPVLRRRAIDALLQGLCFHYDPLANRVQCSITTLAIECG
                     LATESAAGKLSITRATRALTFLAELGLITYQTEYDPLIGCYIPTDITFTSALFAALDV
                     SEEAVAAARRSRVEWENRQRKKQGLDTLGMDELMAKAWRFVRERFRSYQTELKSRGMK
                     RARARRDADRQRQDIVTLVKRQLTREISEGRFTASREAVKREVERRVKERMILSRNRN
                     YSRLATASP"
     gene            complement(2739..>3000)
                     /locus_tag="OQQ19_004125"
     CDS             complement(2739..>3000)
                     /locus_tag="OQQ19_004125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000484486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HCS1805536.1"
                     /translation="QAAAFLGVVPVEKYSGTSVRGCPKLSKIGPPEIRAKLYLASLCG
                     LRFNPLMKAMYERLCLRGKAKMCAIGALMRKLVHWCYGVLKT"
BASE COUNT          783 a          817 c          724 g          676 t
ORIGIN      
        1 caggggctga tcagcagtca ccggaacatc gtagctgacg ccttcacgtt gctcagttgt
       61 ccaaccccgg aaacgggaaa aagcaagttt tcctcgctcc cggcgtttcc ataactgaaa
      121 accatactat ttcacagttt aaatcacatt aaacgacagt aatccccgtt gatttgtgcg
      181 ccaacacaga tcttcgccac aattctcaag tcgctgattt caaaaaactg tagtatcctc
      241 tgcgaaacga tccctgtttg agtattgagg aggcgagatg tcgcagacag aaaatgcagt
      301 gacttcctca ttgagtcaaa agcggtttgt gcgcagaggt aagcctatga ctgactctga
      361 gaaacaaatg gccgctgttg caagaaaacg tcttacacac aaagagataa aagtttttgt
      421 caaaaatcct ctgaaagatc tcatggttga gtactgcgag agagagggga taacacaggc
      481 tcagttcgtt gagaaaatca tcaaagatga actgcagaga ctggatatac taaagtaaag
      541 actttacttt gtggcgtagc atgctagatt actgatcgtt taaggaattt tatggctggc
      601 cacgccataa ggtggcaggg aactggttct gatgtagatg tacaggagcc agaaaagcaa
      661 aaaccccgat aatcttcttt aactttggcg agtcagaaag attaccgggg cccacttaaa
      721 ccgtatagcc aacaatcaag ctatgcgggg agtatagtta tatgcccgga aaagttcaag
      781 acttctttct gtgctcgctc cttctgcgca ttgtaagtgc aggatggtgt gactgatctt
      841 caacaaactt attaccgcca ggtaaagaac ccgaatccgg tgttcacacc ccgtgaaggt
      901 gcccggacgc ttccgttctg cgggaaactg atggaaaagg cggtgggctt cacctcccgt
      961 tttgatttcg ccattcatgt ggcacatgcc cgttcgcttg gtctgcgtcg gcgcatgcca
     1021 ccggtactac gtcgccgggc cattgatgcg ctgctgcagg ggctgtgttt tcactatgac
     1081 ccactggcca accgcgtcca gtgttccatc accacgctgg ccattgagtg cggactggcg
     1141 acggagtctg ctgccggaaa actctccatc acccgggcca cccgggccct gacgttcctt
     1201 gcagagctgg gactgattac ctaccagacg gaatatgacc cgcttatcgg gtgctacatt
     1261 ccgaccgata tcacgttcac atctgcactg tttgctgccc tcgatgtatc agaggaggca
     1321 gtggccgccg cgcgccgcag tcgtgtggaa tgggaaaaca gacagcgcaa aaagcagggg
     1381 ctggataccc tgggtatgga tgaactgatg gcgaaagcct ggcgttttgt tcgtgagcgt
     1441 ttccgcagtt accagacaga gcttaagtcc cgtggaatga agcgtgcccg tgcgcgtcgt
     1501 gatgcggaca ggcagcgtca ggatattgtc accctggtga aacggcaact gacgcgtgaa
     1561 atctcggaag ggcgcttcac tgccagtcgt gaggcggtaa aacgtgaagt ggagcgtcgt
     1621 gtgaaggagc gcatgattct gtcacgtaac cgtaattaca gccggctggc cacagcttcc
     1681 ccctgaaagt gacctcctca gaataatccg gcacgcgccg gaggcattcg cacgcctgaa
     1741 gcccgccagt gcacaaaaaa tcagcgctac atacaaaaaa caacctcatc atccaccttc
     1801 tggtgcatcc ggtcccccct gtttttgata caaaacacgc ctcacagacg gggaattttg
     1861 cttatccaca ttaaactgca agggacttca ccataaggtt acaaccgttc acgtcataaa
     1921 gcgccagccg tcagccctac agggtgcaat gtatctttta aacacctgtt tatatctcct
     1981 ttaaactact taattacatt catttaaaaa gaaaacctgt tcactgcctg tcctgtggac
     2041 agacagatat gcacctccca ccacaagcgg cgggccccga ccgaagccgg tttagttaca
     2101 acatgcaaac ataaacccct aaaaaaccca agtccgacgc agaactgaaa ccacaaagcc
     2161 cctccctcat aactgaaaag cggccccgcc ccggcccgaa gggccggaac agagtcgctt
     2221 ttaattatga atgttgtaac tatattatca tcgctgtcag tcctctggct ggacgtatcg
     2281 agtacacgct cgtaagcggc cctcacggcc ctcacggccc gctaacgcgg agatacgccc
     2341 cgactgcggg taaacccttg tcgggctccg accgcgcaca gaagctctgt catagctgaa
     2401 aacgggtatg gcttggcagc taccatgttc tgtcaagaaa aatcgcttga actccgacgt
     2461 acagccccct aagtactgcc agcaagctgt cagcactaag tccccgatac agcgcggcat
     2521 agccgcgcta acggggttaa aagggcttac ctatacttca tcatcgctga aagcccgcat
     2581 ggcctcgcag ggcagagatg ggataggtga aacctatcaa tacgtaccgg cttacgccgg
     2641 gcttcggcgg tgttactcct gtaccatatg taactacatc atgccgcctt acatgcgcta
     2701 cgcgcatatg aagacaaata gcccacatca aacggttttt aggtcttcag tacgccatag
     2761 caccagtgca cgagttttct catcagcgca ccaatggcac acattttggc cttacctctc
     2821 aggcataatc gctcatacat cgctttcatc aatgggttaa atctcagacc acacaacgaa
     2881 gccagataca gtttcgcccg gatttccggc ggaccaattt ttgacagttt cggacaccct
     2941 ctgaccgagg tgccggaata tttttcaacg ggaacgacac ctaaaaatgc agccgcctgt
//
LOCUS       DAJVSY010000269         2918 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.271, whole genome shotgun sequence.
ACCESSION   DAJVSY010000269 DAJVSY010000000
VERSION     DAJVSY010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2918)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2918)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2918
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.271"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..1322
                     /locus_tag="OQQ19_004126"
     CDS             <1..1322
                     /locus_tag="OQQ19_004126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415419.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1805537.1"
                     /translation="LVVVFSWVFIFALYFTPYALIVGQLGSTFKDGKGGVSTWIKHTM
                     GPGLAYLAAWTYWVVHIPYLAQKPQAILIALGWAMKGDGSLIKEYSVVALQGLTLVLF
                     IFFMWVASRGMKSLKIVGSVAGIAMFVMSLLYVAMAVTAPAITEVHIATTNITWETFI
                     PHIDFTYITTISMLVFAVGGAEKISPYVNQTRNPGKEFPKGMLCLAVMVAVCAILGSL
                     AMGMMFDSRNIPDDLMTNGQYYAFQKLGEYYNMGNTLMVIYAIANTLGQVAALVFSID
                     APLKVLLGDADSKYIPASLCRTNASGTPVNGYFLTLVQVAILIMLPTLGIGDMNNLYK
                     WLLNLNSVVMPLRYLWVFVAFIAVVRLAQKYKPEYVFIRNKPLAMTVGIWCFAFTAFA
                     CLTGIFPKMEAFTAEWTFQLALNVATPFVLVGLGLIFPLLARKANSK"
     gene            complement(1323..2231)
                     /locus_tag="OQQ19_004127"
     CDS             complement(1323..2231)
                     /locus_tag="OQQ19_004127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1805538.1"
                     /translation="MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQR
                     LKIRLFNRTTRSVSLTEAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINDARV
                     AARIFLMPLLVGFTREYPDIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIG
                     PPVKLCVAATPEYFARYGKPRHPHDLLNHQCVVFRYPSGKPFHWQFAKELEIAVAGNI
                     ILDDVDAELEAVLMGAGIGYLLYEQIKEYLDTGRLECVLGDWSTERPGFQIYYPNRQY
                     MSCGLRAFLDYVKTGQISQSQRHRPQ"
     gene            2331..>2918
                     /locus_tag="OQQ19_004128"
     CDS             2331..>2918
                     /locus_tag="OQQ19_004128"
                     /EC_number="1.6.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H oxidoreductase"
                     /protein_id="HCS1805539.1"
                     /translation="MQSERIYLVWAHPRHDSLTAHIADAIHQRAMERKIQVTELDLYR
                     RNFNPVMTPEDEPDWKNMDKRYSPEVHQLYSELLEHDTLVVVFPLWWYSFPAMLKGYI
                     DRVWNNGLAYGDGHKLPFNKVRWVALVGGDKESFVQMGWEKNISDYLKNMCSYLGIED
                     ADVTFLCNTVVFDGEELHASYYQSLLSQVRDMVDAL"
BASE COUNT          738 a          622 c          728 g          830 t
ORIGIN      
        1 ggctggtggt tgttttttca tgggtgttta tctttgcgct ctatttcaca ccttatgcgc
       61 taattgttgg tcagttaggc tcgaccttca aagatgggaa gggcggggtc agtacctgga
      121 ttaaacacac gatgggaccc ggactggctt atctcgccgc gtggacctac tgggtggtgc
      181 atattcccta tctggcacaa aaaccccagg caattctgat tgcgctcggt tgggcgatga
      241 aaggcgacgg ttcgctaatc aaagaatatt cagtcgtagc gttacagggg ttaacgctgg
      301 tgctgtttat cttctttatg tgggttgctt cacgcggtat gaaatcgctg aaaatcgtcg
      361 gttctgtggc agggattgcg atgtttgtta tgtcgctcct gtatgtggcg atggcggtaa
      421 ccgcgcctgc gattactgaa gtgcatattg cgaccacaaa cattacctgg gaaacgttca
      481 ttcctcatat cgactttacc tacattacca ctatttcaat gctggttttc gcggttggcg
      541 gagcagagaa gatttctcct tacgttaatc aaacgcgcaa cccaggaaaa gaatttccaa
      601 aagggatgtt atgcctggcg gtgatggttg cggtttgtgc cattctgggc tcactggcga
      661 tggggatgat gtttgactcg cgtaatatcc cggatgactt aatgactaac ggtcaatatt
      721 acgcctttca gaagctgggc gagtattaca acatgggtaa tactttaatg gtgatttacg
      781 ccattgcgaa taccctggga caagtagctg cgctggtatt ctcgattgat gccccgctta
      841 aagtgctatt aggtgatgct gacagcaaat atattccagc cagtttatgt cgtaccaacg
      901 cttctggtac gcccgttaat ggctattttc tgaccctggt gcaggtggca attctgatta
      961 tgctgccgac tctcggcatc ggtgatatga acaatctcta taaatggctg ttgaatctta
     1021 actcggtagt gatgccgctg cgttatttat gggtatttgt tgcatttatt gcagtcgttc
     1081 gcctggcgca gaaatataaa ccagaatatg tctttattcg taataagcct ctggcaatga
     1141 ccgtcgggat ttggtgtttt gcctttaccg cctttgcctg tttgacgggg atcttcccga
     1201 aaatggaagc cttcactgca gagtggacct tccagttggc gctgaatgtt gcaacgccgt
     1261 ttgtgctggt aggattagga ctgattttcc cgctgctggc gcgtaaagcg aatagtaaat
     1321 aattattgtg gtcggtgacg ctgactctgg ctgatctgac ccgtttttac ataatcgaga
     1381 aatgcgcgca agccgcagga catatactgg cggtttggat aatagatctg gaagcctgga
     1441 cgctctgtgc tccagtctcc cagtacacat tctaaacgac cagtatcaag gtactccttg
     1501 atctgttcat agagcagata cccgatacca gcacccatca aaacggcctc cagttcagca
     1561 tcaacatcat ccagaatgat atttcctgcg acagcaattt ccagctcctt tgcaaattgc
     1621 cagtggaaag gtttgccgct gggataacga aaaacaacac attgatgatt aagcagatca
     1681 tgaggatggc ggggtttgcc atatcttgca aagtactctg gcgttgctgc tacacataat
     1741 ttcactggcg ggccgatcgc cacgctgatc atatcttttt cgacgatgcc actaagtcga
     1801 acgccagcgt caaagccctg ttggacgata tcgacaagag agtcgtcagt tgtgagctcg
     1861 actttaatat caggatattc acgtgtgaaa ccaaccagta aaggcattaa aaatatacgt
     1921 gcagctaccc gggcgtcatt gattttgagc gttcctgtcg gtgtcagacg aaaatcattc
     1981 atctcatcta acatgatctg aatttcgtcg aaagctgggc gcaatcgttc atagagatta
     2041 gaacccgctt ccgttaacga tacgcttcgg gttgtccgat tgaataagcg aattttaaga
     2101 cgttgttcca gtgttttaat actatggcta atggcggacg aggataagcc taactcatcg
     2161 cccgctgcac gaaagctttg attacgggcc acggcaaaga aagtggcaaa gtcagacata
     2221 ttcatccgca ttagtgaaaa tccttcatta actcatcctg aatcatcacg tttacaggat
     2281 tatgccgcct gcgtaaagtg cgctccagaa cttaacgtgg aggtaaaatt atgcagtctg
     2341 aacgtattta tttggtatgg gcccatcctc gtcatgattc attgaccgca catattgctg
     2401 atgcgatcca tcagcgggca atggagcgga aaatacaggt gacggaactc gatttatatc
     2461 ggcgtaattt caacccagtg atgacgccgg aagatgaacc agactggaag aatatggata
     2521 aacgttattc tccagaggtt catcagcttt attcagagct gcttgaacat gacacgttag
     2581 tggtggtttt tcctctctgg tggtacagct tcccggcaat gctaaaagga tatattgaca
     2641 gagtatggaa taatgggctg gcttatggag atgggcacaa attaccattc aataaagttc
     2701 gttgggtggc gctggttgga ggagacaaag aatcatttgt ccagatgggc tgggaaaaaa
     2761 atataagcga ttatttgaaa aatatgtgca gttatcttgg tattgaagat gccgatgtca
     2821 ctttcttgtg taatacagtg gtattcgatg gggaagaact tcatgcgagc tattatcagt
     2881 cgttattatc tcaggtacgg gatatggtag atgcacta
//
LOCUS       DAJVSY010000270         2881 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.272, whole genome shotgun sequence.
ACCESSION   DAJVSY010000270 DAJVSY010000000
VERSION     DAJVSY010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2881)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2881)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2881
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.272"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(924..1595)
                     /gene="queE"
                     /locus_tag="OQQ19_004129"
     CDS             complement(924..1595)
                     /gene="queE"
                     /locus_tag="OQQ19_004129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HCS1805540.1"
                     /translation="MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTW
                     EKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLL
                     PLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKH
                     PVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHK
                     YLNIA"
     gene            1734..1874
                     /locus_tag="OQQ19_004130"
     CDS             1734..1874
                     /locus_tag="OQQ19_004130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805541.1"
                     /translation="MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFI
                     QI"
     gene            1888..2760
                     /locus_tag="OQQ19_004131"
                     /pseudo
     CDS             1888..2760
                     /locus_tag="OQQ19_004131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417258.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YgcG family protein"
BASE COUNT          872 a          598 c          545 g          866 t
ORIGIN      
        1 tttaactagt tcggtttatc cctgttttta caaggaatat taactacact cgatgtcttt
       61 agaataaaag acaatacgaa tcgcacttta tcaattttca cttaaagtat gaactggata
      121 tctttattca taagaactat tcatcaacag cgtatagagg cggttatgta aaaccactca
      181 ttagcctcaa aacaaagaca aacttccaga tttattactt aaccaatgaa taacaagctt
      241 aaaaaatata ctgttattct aaagaaaaaa ttaacaggca ttaattcaat attaaaaaaa
      301 taatagatta aaatttctta acgatttaag aatcatacaa ataacacttt gattaaattt
      361 aattttttgt atcgataatt gtgaacctct ctggcatgga gaactatttt gaacatgagg
      421 tgttacgtgg atatgttgct tattacaagt actgctaata taaaaacttg agaaagagat
      481 aacgggttat atggtggttt atccccgctg gcgcgggaaa ctcccagctc ttgcccgcct
      541 caaagggttg taactcggtt tatccccgct ggcgcgggga actctgtaaa cataacctat
      601 tattaattaa tgatttttta agccagtaac aatctaccaa ctttacagta tcacacaaac
      661 aacacatcca ttatgttaaa gagtacttaa ttcattgatt aaaaaggtaa atatttaaaa
      721 taactctata caaattaaaa tctaccaaac tttaccgcaa taattttcac tccagcgaaa
      781 aattaatgcc acagaatttg tagataatgc taatgattag ccctggatgg gtaaaatgga
      841 ggagttttca gaggcgacaa acaatataaa tgagtagaag tctttacagg ttccacccat
      901 ttataacgct tataaatgtt taatcaggca atatttagat atttatgtgt ttgcatcgac
      961 aaacgccaat tacgcgcaat gcaggtttca atgcacaaac gtgtggcatc atccttttgg
     1021 ctaatcggct gcagtgcaat gactcgcggt ttatcatcgg tcagcgttgc caatagttca
     1081 tcgagtgctt caatatcgcg tacgcgcccc actggatgct tgatttcgtt ggctcgctcc
     1141 agtgcctgtg acaacacgtc atagccgccg cgcatgttca gctttggcga tacggtaacc
     1201 caggtattcg gtgtgcagcg tacttcatga gttccactgg tttcgatctg gcagctaaaa
     1261 ccgttctttt cgagcaggtc agtcagtggc agcaaatcat gaatgcaagg ctcaccaccc
     1321 gtaatcacca catgccgcgc ggtatatccc tgccgaccaa tgacagccag caaatcttca
     1381 ctgctcgccg ccccccactt atcactctct ttggtcttcg ccagaatgct gaaaagggag
     1441 acttcccgat cctcaagctt ttcccaggtg tgtttggtgt cgcaccaggc acagccaacc
     1501 gggcatccct gtaaacgaat aaaaatggcg gggacgccgg taaagtaacc ctcaccttgc
     1561 agggtctgga acatctcgtt aatcgggtac tgcatagcat tctctgtgaa gtggataatt
     1621 gttaattatt gcagatcctg ccgcaacaat catgccttat taacattctg ttacatgcag
     1681 atttaaagaa aaatgcgaaa catatcgtta ataattaaag ggagtaacgt attatgtcag
     1741 aagaaaataa agaaaatgga tttaatcatg tcaaaacatt caccaaaatt atatttattt
     1801 tttctgtatt agtttttaat gataacgagt ctaaaattac cgatgccgcc gtcaatttat
     1861 ttatccagat ttaatgagaa atttataatg cgctatttca tactaatgtt cactttcgta
     1921 tgttcctttg ttgcagccca accaactatt gtcccacaat tacagtaaca agttacggat
     1981 cttacgagta gcttaaactc acaagaaaag aaagaactga cgcacaagtt agaatctatt
     2041 ttcaataata cccaagtgca aattgctgta ttaattgttc ccacaaccaa agacgagaca
     2101 attgaacaat atgctacaag agtttttgac aattggcgtt taggagatgc caaacgtaat
     2161 gatgggatac tgatcattgt tgcctggtca gatcgtactg tccgcatcca ggtaggttat
     2221 gggctggaag aaaaggtaac cgatgctctg gctggagata tcatccgtag caacatgata
     2281 cccgcattta aacaacaaaa atttgctcag ggattagagc tagctataaa cgctttgaat
     2341 aaccaactca cttcacaaca ccaatatccg actaatcctt cagaaagtga atcagcgtct
     2401 tccagtgatc attattactt tgctattttt tgggtatttg cagtgatgtt cttccctttc
     2461 tggttttttc atcaaggcag taatttttgt cgcgcatgta aaagtggagt ctgtatttca
     2521 gcaatctatc ttttagattt attcctgttc tccgataaaa ttttttccat tgctgtattt
     2581 tccttctttt ttactttcac catatttatg gtctttacct gtttatgtgt acttcagaaa
     2641 agagcatcag gtaaaagtta tcattcagac aacagcggtt ccggtggagg ctcaagtggc
     2701 ggcggattta gcggcggtgg cggttcttct ggaggtggcg gcgcatccgg ccgctggtaa
     2761 ctcaaccata aaaaatgcca tcccggaggc tgtaatgcca gtcagttaag caactgactg
     2821 gctctttttc ggggctgtgg ggtatttcca gggcctctcc tttaccactc tcgggaaggc
     2881 c
//
LOCUS       DAJVSY010000271         2872 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.273, whole genome shotgun sequence.
ACCESSION   DAJVSY010000271 DAJVSY010000000
VERSION     DAJVSY010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2872)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2872)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2872
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.273"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..588
                     /locus_tag="OQQ19_004132"
     CDS             <1..588
                     /locus_tag="OQQ19_004132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1805542.1"
                     /translation="TITSGGNPPAFSLTPDGRLTAKNADISGNVNANSGTLNNVTINE
                     NCRVLGKLSANQIEGDLVKTVGKAFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPA
                     VAFSGAKHEREHTDIYSSCRLIVRKNGAEIYNRTALDNTLIYSGVIDMPAGHGHMTLE
                     FSVSAWLVNNWYPTASISDLLVVVMKKATTGITIS"
     gene            656..1255
                     /locus_tag="OQQ19_004133"
     CDS             656..1255
                     /locus_tag="OQQ19_004133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ail/Lom family outer membrane beta-barrel
                     protein"
                     /protein_id="HCS1805543.1"
                     /translation="MRKLCAVILSAVVWLVAAGMPASAAEHQSTLSAGYLQTHTDMPG
                     SDDLNGINVKYRYEFTDTLGLVTSFSYANAKDEQKTHYSDTRWHEDSVRNRWFSVMAG
                     PSVRVNEWFSAYAMAGVTYSRVSTFSGDYLRVTDSKGKTHDVLTGSDDGRHSNTSLAW
                     GAGVQFNPTESVAIDIAYEGSGSGDWRTNSFIVGVGYKF"
     gene            1320..>2872
                     /locus_tag="OQQ19_004134"
     CDS             1320..>2872
                     /locus_tag="OQQ19_004134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000216497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS1805544.1"
                     /translation="MAVLISGVLKDGAGKPIQNCTIQLKARRNSTTVVVNTVASENPD
                     EAGRYTMDVEYGQYSVSLLVEGFPPSHAGIITVYEDSKPGTLNDFLGAMTEDDVRPEA
                     LRRFELMVEEVARNASAVAQNTAAAKKSASDARTSAREAATHATDAAGSARAASTSAG
                     QAASSAQSASSSAGAASTKASEASKSAAAAESSKSAAATSASAAKTSETNAAASQQSA
                     ATSASTATTKASEAATSARDASASKEAAKSSETNAASSASSAASSATAAANSAKAAKT
                     SETNARSSETAAGQSASAAADSKTAAALSASAASTSAGQASASATAAGKSAESAASSA
                     STATTKAGEAAVQASAAARSASAAKTSETNAKASETSAESSKTAAASSASSAASSASS
                     ASASKDEATRQASAAKGSATTASTKATEAAGSATAAAQSKSTAESAATRAETAAKRAE
                     DIASAVALEDASTTKKGIVQLSSATNSTSESLAATPKAVKAAYELANGKYTAQDATTA
                     QKGIVQLSNA"
BASE COUNT          732 a          754 c          855 g          531 t
ORIGIN      
        1 accattacca gcggcggtaa tcctccggca ttttccctga caccggacgg gcggctgacg
       61 gcgaaaaatg ccgatattag cggtaacgtg aatgcgaact ccgggacgct caacaacgtc
      121 acgattaacg agaactgtcg ggttctggga aaactgtccg ccaaccagat tgaaggcgat
      181 ctcgttaaaa cagtgggcaa agctttcccc cgggactccc gtgcaccgga gcggtggcca
      241 tcagggacca ttaccgtcag ggtttatgac gatcagccgt ttgaccggca aattgttatt
      301 ccggcggtgg cattcagtgg cgctaagcat gagagagagc atactgatat ttactcctca
      361 tgccgtctga tagtgcggaa aaacggtgct gaaatttata accgtaccgc gctggataat
      421 acgctgattt acagtggcgt tattgatatg cctgccggtc acggtcacat gacactggag
      481 ttttcggtgt cagcatggct ggtaaataac tggtatccca cagcaagtat cagcgatttg
      541 ctggttgtgg tgatgaagaa agccactaca ggcatcacga ttagctgaat tttataaccc
      601 agatacgggc accagaaatg gtgccttttt tattgcagaa aagcgagagg taattatgcg
      661 taaattatgt gctgttattc tgtccgcagt agtctggctg gttgccgctg gtatgccagc
      721 gagcgcagca gagcatcagt ccacactaag cgccgggtat cttcagaccc atactgatat
      781 gccaggcagc gatgatctga acgggattaa cgtgaaatac cgttatgagt ttacggacac
      841 gctggggctg gtgacgtcat tcagttatgc caatgccaaa gatgagcaaa aaacgcatta
      901 cagcgatacc cgctggcatg aagattccgt gcgtaaccgc tggttcagcg tgatggcggg
      961 gccgtctgtg cgcgtgaatg aatggttcag cgcgtatgcg atggcgggtg tgacttacag
     1021 tcgtgtgtcg actttttccg gggattatct ccgtgtaact gacagcaagg ggaaaacgca
     1081 cgatgtgctg accggaagtg atgacggtcg ccacagcaac acgtctctgg cgtggggggc
     1141 tggcgtgcag tttaacccga ccgaatccgt ggccattgat attgcttatg aaggctccgg
     1201 cagtggtgac tggcgtacca acagtttcat cgttggtgtc ggctataaat tctgattagc
     1261 caggtaacac agtgttatga cagcccgccg gttcaggcgg gcttttttgt ggggggaata
     1321 tggcagtact gatttcaggt gtactgaaag atggtgcagg taagccgata caaaactgca
     1381 ccattcagct aaaggccagg cgcaacagca ccacggtggt ggtgaacaca gtggcctcag
     1441 aaaatccgga tgaagccggg cgttatacaa tggacgtcga gtatggtcag tacagcgtca
     1501 gtctgttggt ggagggattc ccgccgtcac acgccgggat tatcaccgta tatgaggact
     1561 caaagccggg cacactgaat gatttcctcg gtgcaatgac ggaggatgat gtccggccag
     1621 aggcactgcg ccgttttgaa ctgatggtgg aagaggtggc gcgtaacgcg tccgcagtgg
     1681 cacagaacac ggcagccgcg aagaagtcag ccagcgatgc ccgcacatca gcccgtgagg
     1741 cggcaaccca tgcgactgat gctgcaggct cagcacgcgc agccagcacg tcagccggac
     1801 aggccgcgtc gtcggctcag tcagcgtctt ccagcgcagg agcggcatca acaaaggcca
     1861 gtgaagcatc gaaaagtgct gctgctgcag agtcctcaaa aagcgcggca gctaccagtg
     1921 ccagtgccgc gaaaacgtca gaaacgaatg cggcagcgtc acaacaatca gcagccactt
     1981 ctgcatccac cgcgaccacg aaagcgtcag aagcagccac ttcagcacgg gatgcgtcgg
     2041 cttcaaaaga ggcggcaaaa tcatcagaaa cgaacgcagc ctcgagcgcc agcagcgcag
     2101 cttcctcggc aacggcggca gcaaattctg cgaaggcggc aaaaacgtcc gagacgaacg
     2161 ccaggtcttc tgaaacggca gcgggacaga gcgcctcagc tgcggcagac tcaaaaacag
     2221 cggctgcatt atctgccagt gccgcgtcaa caagtgccgg gcaggcctca gccagtgcca
     2281 ccgccgccgg aaaatcggca gaaagtgctg catcgtctgc ttcaacagcc acaacgaagg
     2341 ctggcgaagc cgctgtacag gccagcgcag cagcgaggtc tgcttccgca gcgaagacat
     2401 ccgagacgaa cgcgaaagcg tcggaaacca gcgcagaatc ctcaaaaacg gctgccgcat
     2461 cgtccgccag ttcggcggcg tcatcggcat catctgcgtc tgcttcaaaa gatgaggcga
     2521 ccagacaggc gtcagcagca aagggcagcg ccacgacggc atccacgaag gcgacagagg
     2581 cagctggcag tgcgacggcg gcagctcaga gcaaaagtac ggcggaatcc gcggcaacgc
     2641 gcgctgagac agcggcaaaa cgggcagagg atattgcatc cgccgtggcg cttgaggatg
     2701 cgagcacgac gaaaaagggg atagtacagc tcagcagtgc gactaacagc acttccgagt
     2761 cactggcggc aacgccaaaa gccgttaagg ccgcgtatga gctggctaac gggaaataca
     2821 ccgcacagga tgcaacgaca gcacagaaag ggatagttca gcttagcaac gc
//
LOCUS       DAJVSY010000272         2866 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.274, whole genome shotgun sequence.
ACCESSION   DAJVSY010000272 DAJVSY010000000
VERSION     DAJVSY010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2866
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.274"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..1073)
                     /locus_tag="OQQ19_004135"
     CDS             complement(<1..1073)
                     /locus_tag="OQQ19_004135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000142995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1737 domain-containing protein"
                     /protein_id="HCS1805545.1"
                     /translation="MAFKHYDVVRAASPSDLAEKLTHKLKEGWQPFGSPVAITPYTLM
                     QAIAAEGAVISATSDPEYYFVVVLAGQSNGMSYGEGLPLPGTYDRPDPRIKQLARRST
                     VTPGGAACKYNDIIPADHCLHDVQDMSRLNHPKADLSKGQYGTVGQGLHIAKKLLPFI
                     PANAGILLVPCCRGGSAFTTGADGTYSDASGASENSTRWGVDKPLYKDLIGRTKAALE
                     KNPKNVLFAVVWMQGEFDFGGTPANHAAQFGALVDKFRADLADMAGQCVGGSAGGVPW
                     ICGDTTYFWKQKNESTYQTVYGSYKNKTEKNIHFVPFMTDENGVNVPTNKPEEDPDIR
                     GIGYYGSKWRDSSATWTSQDRAS"
     gene            complement(1563..1639)
                     /locus_tag="OQQ19_004136"
     tRNA            complement(1563..1639)
                     /locus_tag="OQQ19_004136"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1603..1605),aa:Arg,seq:tct)
     gene            complement(1653..1729)
                     /locus_tag="OQQ19_004137"
     tRNA            complement(1653..1729)
                     /locus_tag="OQQ19_004137"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1693..1695),aa:Arg,seq:tcg)
     gene            complement(1737..1812)
                     /locus_tag="OQQ19_004138"
     tRNA            complement(1737..1812)
                     /locus_tag="OQQ19_004138"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1777..1779),aa:Ile,seq:cat)
     gene            complement(1853..2818)
                     /locus_tag="OQQ19_004139"
                     /pseudo
     CDS             complement(1853..2818)
                     /locus_tag="OQQ19_004139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001403604.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
BASE COUNT          644 a          851 c          693 g          678 t
ORIGIN      
        1 tggctcgccc tgtcctgtga cgtccaggtg gctgagctgt cacgccattt cgaaccgtaa
       61 taaccgatac cccgaatgtc cgggtcttct tccggtttgt tcgtcggcac attcaccccg
      121 ttctcatcgg tcatgaacgg tacgaaatgg atattctttt ccgttttatt tttatagctg
      181 ccgtacaccg tctggtacgt ggattcgttc ttctgcttcc agaaatacgt cgtgtccccg
      241 catatccagg gaacaccgcc agcagagcca ccgacgcact ggcctgccat atccgccagg
      301 tctgcacgga atttatcaac cagcgcacca aactgtgcgg catgatttgc cggcgtaccg
      361 ccaaaatcaa attccccctg catccacacc acggcaaaca gcacattttt cgggttcttc
      421 tccagtgccg cttttgttcg accgataagg tccttataca gcggcttgtc cacaccccag
      481 cgggttgaat tctccgaggc accactcgcg tcactgtatg tgccatcagc tccggtggtg
      541 aacgctgaac caccacgaca gcacggaacc agcagaatgc ccgcattcgc cggtataaac
      601 ggcagcagtt ttttggcgat atgcagcccc tgccccacgg ttccgtactg cccctttgac
      661 aggtccgctt tcggatggtt aagacggctc atgtcctgca catcatgcag acaatggtcc
      721 gccggaatga tgtcgttata tttgcatgct gcaccgcccg gtgtcaccgt actgcgacgc
      781 gccagttgct taatacgcgg gtccggacgg tcatatgtcc ccggcagcgg aaggccttca
      841 ccatacgaca tgccgtttga ctgccctgcc agaaccacaa caaagtaata ctccgggtcg
      901 ctggtggcgc tgattactgc accttctgct gcaatcgcct gcatcagagt ataaggggtt
      961 atggccaccg gactaccaaa cggctgccag ccctctttca gtttatgtgt cagcttttcc
     1021 gcaagatctg acggcgacgc cgccctgaca acatcatagt gtttaaaagc catgaatcct
     1081 cccggccggg ataatattgt gagtaaaatg aggagcgggc tgaagtccgg aagttacagg
     1141 acaatggcag aagagagacg acagcccgca attcgaaaaa gaccgcgcag ttgcgcagag
     1201 tgactactat ggggtattat tcgccagctg aaatattact tcacgtttta ttgtttattc
     1261 cttgccgccc gcgtctccca gcgcgggctt tttttgccca caagaaagcc cctccggaga
     1321 ggggctggag agtggcgcta tgtgccattg catggtgccg ggtgcctccc ggtgaattca
     1381 gtaccagcac ctgaatccgc gattatccca tatacctact cgctgattgc ccctccgcac
     1441 agggggattc accatgccag tttcttttaa caaactcccc gcaaaccaga caacagtcaa
     1501 ccgtctgaat tgtgagacat ttaaaaaaaa agcccgcaaa agcgagccag ggaaaataag
     1561 tgtggcgcgt tgtactggat tcgaaccagt gaccgattgc ttagaaggca attgctctgt
     1621 ccggctgagc taacaacgca tgatgcagat aatggaccgc catcggggac ttgaaccccg
     1681 cgcagccagc ttcgaaggct ggcgctcttt cctgatgagc taatggcggt atgtgatggt
     1741 ggcccttgct ggatttgaac cagcgacctg gcgattatga gtcgctcgct ctcaccactg
     1801 agctaaaggg ccgggagccg cataataacg acgcgtaatt aattcttcaa tatcatccgt
     1861 tctggctgac taaatcctgt acttcccgaa ccgtctgctc aaaacgttca gtctccagct
     1921 caacgccaat tgcacgacgc ccgagcgcca gtgccgcttt cactgtcgaa cccgacccca
     1981 tgaaaaaatc tgcaatcagg tcacccggac gactgctagc gctgattatc tgctgcagca
     2041 tttctgccgg tttttcgcac ggatgtttcc cgggatagaa ctgcaccggt ttatgcgtcc
     2101 acacatcggt atacggcacc tgcaccgtca cgccaaaata ccgccgcaga tgtttatatt
     2161 cactcagcag ctccgcatac tgccggttca gtgaggtata cgtatccacc agctggtggt
     2221 ggagcttttc cagttcacca cgccgatgct tctcttctgc cacccgggca aacagcgcct
     2281 gtaatttcag ataatcgctt tcattcggca actgccactg actggcactg aaccagtgcg
     2341 acaccatgtt tttctttcct gtggcatctg caatctgttt tgccgttatc cccagggcag
     2401 ctcgcgcatc acgaaagtaa gaaatcagcg gggccatcac atgctgtttc agtgcactgc
     2461 ccttcgcctc atagccatca tctttcgggc ggtacggccc ctgataatgt tccgcgaaca
     2521 gaatgcgctc tgtggcgggg aaatacgccc gcaggctttc cttgttgcat ccgttccagc
     2581 gtccggacgg cttcgctcag ataatatggt tcagcacact gaagcgttca cgcatcatga
     2641 tttcgatatc agatgccagg cgatgaccac agaacaggta aagacttccg gcaggtttca
     2701 gcacccgcca gaactgcgcc agacactgct ccagccactt caggtaatca tcgtcgccct
     2761 tccactggtt atcccagccc tcaggcttca ctttaaagta cggcgggtcc gtgactatca
     2821 ggtcaacaga attttcgggt aacgaccaga taaattccag gcagtc
//
LOCUS       DAJVSY010000273         2839 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.275, whole genome shotgun sequence.
ACCESSION   DAJVSY010000273 DAJVSY010000000
VERSION     DAJVSY010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2839)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2839)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2839
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.275"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            1..134
                     /locus_tag="OQQ19_004140"
                     /pseudo
     CDS             1..134
                     /locus_tag="OQQ19_004140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309413.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3440 domain-containing protein"
     gene            384..1250
                     /gene="ospB"
                     /locus_tag="OQQ19_004141"
     CDS             384..1250
                     /gene="ospB"
                     /locus_tag="OQQ19_004141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspB"
                     /protein_id="HCS1805546.1"
                     /translation="MNLDGVRPYCRTVNKKNESISDIAFAHIIKRVKNSSCTHPKAAL
                     VFLGEKGFCDSNDVLSIMGQQIPRVFKNKMLYDYVFKNEKSKNDFLKMAESWLPQSEP
                     IVINNDDDALNAAAYFSVKKAKIKTVNDTDFKEYNKVYILGHGSPGSHQLGLGSELID
                     VQTIISRMKDCGILNVKDIRFTSCGSADKVAPKNFNNAPAESLSCILNSLPFFKEKES
                     LLEQIKKHLENDESLSDGLKISGYHGYGVHYGQELFPYSHYRSTSIPADPEHTVKRSS
                     QKKTFIINKELD"
     gene            1580..2320
                     /gene="phoN2"
                     /locus_tag="OQQ19_004142"
     CDS             1580..2320
                     /gene="phoN2"
                     /locus_tag="OQQ19_004142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAP2 family phosphatase PhoN2"
                     /protein_id="HCS1805547.1"
                     /translation="MKTKNFLLFCIATNMIFIPSANALKAEGFLTQQTSPDSLSILPP
                     PPAEDSVVFQADKAHYEFGRSLRDANRVRLASEDAYYENFGLAFSDAYGMDISRENTP
                     ILYQLLTQVLQDSHDYAVRNAKEYYKRVRPFVIYKDATCTPDKDENMAITGSYPSGHA
                     SFGWAVALILAEINPQRKAEILRRGYEFGESRVICGAHWQSDVEAGRLMGASVVAVLH
                     NTPEFTKSLSEAKKEFEELNTPTNELTP"
     gene            complement(2673..>2839)
                     /locus_tag="OQQ19_004143"
     CDS             complement(2673..>2839)
                     /locus_tag="OQQ19_004143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="T3SS effector OspC family protein"
                     /protein_id="HCS1805548.1"
                     /translation="LEYFINNGLVDVNKKFQKANSGDTMLDNAMKSKDSKMIDFLLKN
                     GAVSGKRFER"
BASE COUNT          929 a          517 c          526 g          867 t
ORIGIN      
        1 cggtaagaga agttcatcat acttggcgca gttacgcgat gtttctgcta gaggtgatgc
       61 cgtaaagaac ggcagaacat taccggaaca agatagcggt ctacctgcac tggtatcaga
      121 cccggggctt ccccggatga tctccacggt actttaggta ctgtgtctat attatgtagg
      181 taggatcaat taactttgta gttgaaattc tttcattgaa ataatgaata aaaaagacaa
      241 accgcattaa acaatgccag aatataattg catttttgtt ccgttttttt aaatcatagt
      301 atacaaagaa gcttgcatac tatatgaaaa tataacaccc tttactatga tgtttataaa
      361 acaatatatg gagtcatgta ggtatgaatt tagatggtgt tagaccatac tgtagaacag
      421 tcaataaaaa gaatgaaagc atatcagata ttgcatttgc acatataata aaaagggtaa
      481 aaaattcatc atgtactcac ccaaaagcag cattggtttt tttaggagag aaaggttttt
      541 gtgatagcaa tgatgttcta tctattatgg gacaacaaat accaagagta tttaagaaca
      601 agatgttata tgattatgtt tttaaaaatg aaaaaagtaa aaatgatttt ctaaaaatgg
      661 ctgaatcatg gctaccacag agtgaaccaa tagtaataaa taatgatgat gacgcattga
      721 atgctgctgc ttatttttct gtaaaaaaag cgaaaataaa aacagtaaac gatactgatt
      781 ttaaagagta taataaggtt tatattcttg ggcacggtag tcctggttct catcaattag
      841 gccttggttc ggaacttatt gatgtacaaa caatcatttc aagaatgaaa gactgtggta
      901 ttctaaatgt gaaagatatc cgttttactt catgcggctc cgctgataaa gtggctccta
      961 aaaattttaa caatgcccct gctgaaagtc tttcttgtat ccttaactct ctgccttttt
     1021 ttaaggaaaa agaatctttg ctagagcaga taaaaaaaca ccttgaaaac gatgagtcat
     1081 tgagtgatgg tctaaaaata tccggctatc atggatatgg agttcactat ggtcaagagc
     1141 tttttcccta ctcacattat cgttcaactt caattcctgc tgatccggag catacagtaa
     1201 aaagaagctc tcagaaaaag acttttatta ttaataaaga actggattag tataaaattt
     1261 ttaacctata gttaattgtt tgcatttaag atgaagttat ttttttcttt agtagaaaag
     1321 tgcttcccta tgagggaaaa tcacaaatca tcataataca gagacaaaac gatacgaaca
     1381 aatagataaa aaacatcatt cttttactac attatttttc gtgaatatga aaaataatgt
     1441 tattacttta atataagact attttttgtt tttccatcac tctgttcaaa tttttccgca
     1501 tgacttgtgt tttttgtaac acagctcgtt ttttacagct gaccaaaatc atcaattaat
     1561 tatgctaagg aaataaatta tgaaaaccaa aaactttctt cttttttgta ttgctacaaa
     1621 tatgattttt atcccctcag caaatgctct gaaggcagaa ggttttctca ctcaacaaac
     1681 ttcaccagac agtttgtcaa tacttccgcc gcctccggca gaggattcag tagtatttca
     1741 ggctgacaaa gctcattatg aattcggccg ctcgctccgg gatgctaatc gtgtacgtct
     1801 cgctagcgaa gatgcatact acgagaattt tggtcttgca ttttcagatg cttatggcat
     1861 ggatatttca agggaaaata ccccaatctt atatcagttg ttaacacaag tactacagga
     1921 tagccatgat tacgccgtgc gtaacgccaa agaatattat aaaagagttc gtccattcgt
     1981 tatttataaa gacgcaacct gtacacctga taaagatgag aacatggcta tcactggctc
     2041 ttatccctct ggtcatgcat cctttggttg ggcagtagca ctgatacttg cggagattaa
     2101 tcctcaacgt aaagcggaaa tacttcgacg tggatatgag tttggagaaa gtcgggtcat
     2161 ctgcggtgcg cattggcaaa gcgatgtaga ggctgggcgt ttaatgggag catcggttgt
     2221 tgcagtactt cataatacac ctgaatttac caaaagcctt agcgaagcca aaaaagagtt
     2281 tgaagaatta aatactccta ccaatgaact gaccccataa agctggacag cctgtatcag
     2341 gctatggagg gcccatagac aaatctaccc tatatgagca taggaggagt ctatgggcac
     2401 accacgtttt acccctgaat ttaagggatt actggaaagg ctgggacata tccctccggc
     2461 agaagcagaa aaagcttatt atgctgccat cggaaacgat gatctggcaa cctgagttca
     2521 cagataaaac attctctagg aaactcgggg cggttccgtt caccacatgc aatgtggtgt
     2581 tgcaggggaa cggtctgcac catcccctat gtcgatcaat ataacagaaa tgacaacttc
     2641 agattcaggg cacaacctaa atatatttta ggtcacctct caaatcgttt gcctgatacc
     2701 gctccatttt ttaataaaaa atcaatcatt tttgaatctt tgcttttcat tgcattgtca
     2761 agcatagtgt ccccactatt tgctttttga aattttttgt ttacatcaac caatccatta
     2821 ttgataaaat attctagca
//
LOCUS       DAJVSY010000274         2740 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.276, whole genome shotgun sequence.
ACCESSION   DAJVSY010000274 DAJVSY010000000
VERSION     DAJVSY010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2740)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2740)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2740
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.276"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..172
                     /locus_tag="OQQ19_004144"
     CDS             <1..172
                     /locus_tag="OQQ19_004144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310435.2"
                     /note="acts in anaerobic beta-oxidation of fatty acids;
                     possible ligase/synthase involved in anaerobic growth on
                     fatty acids; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cyclohexanecarboxylate-CoA ligase"
                     /protein_id="HCS1805549.1"
                     /translation="EVVAFFSHKRVAKYKYPEHIVVIEKLPRTASGKIQKFLLRKDIM
                     RRLTQDVCEEIE"
     gene            complement(229..2607)
                     /gene="ppsA"
                     /locus_tag="OQQ19_004145"
     CDS             complement(229..2607)
                     /gene="ppsA"
                     /locus_tag="OQQ19_004145"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HCS1805550.1"
                     /translation="MSNNGSSPLVLWYNQLGMNDVDRVGGKNASLGEMITNLSGMGVS
                     VPNGFATTADAFNQFLDQSGVNQRIYELLDKTDIDDVTQLAKAGAQIRQWIIDTPFQP
                     ELENAIREAYAQLSADDENASFAVRSSATAEDMPDASFAGQQETFLNVQGFDAVLVAV
                     KHVFASLFNGRAISYRVHQGYDHRGVALSAGVQRMVRSDLASSGVMFSIDTESGFDQV
                     VFITSAWGLGEMVVQGAVNPDEFYVHKPTLAANRPAIVRRTMGSKKIRMVYAPTQEHG
                     KQVKIEDVPQEQRDIFSLTNEEVQELAKQAVQIEKHYGRPMDIEWAKDGHTGKLFIVQ
                     ARPETVRSRGQVMERYTLHSQGKIIAEGRAIGHRIGAGPVKVIHDISEMNRIEPGDVL
                     VTDMTDPDWEPIMKKASAIVTNRGGRTCHAAIIARELGIPAVVGCGDATERMKDGENV
                     TVSCAEGDTGYVYAELLEFSVKSSSVETMPDLPLKVMMNVGNPDRAFDFACLPNEGVG
                     LARLEFIINRMIGVHPRALLEFDDQEPQLQNEIREMMKGFDSPREFYVGRLTEGIATL
                     GAAFYPKRVIVRLSDFKSNEYANLVGGERYEPDEENPMLGFRGAGRYVSDSFRDCFAL
                     ECEAVKRVRNDMGLTNVEIMIPFVRTVDQAKAVVEELARQGLKRGENGLKIIMMCEIP
                     SNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDSGVVSELFDERNDAVKALLSMAIRA
                     AKKQGKYVGICGQGPSDHEDFAAWLMEEGIDSLSLNPDTVVQTWLSLAELKK"
BASE COUNT          654 a          761 c          682 g          643 t
ORIGIN      
        1 agaggtggtg gcttttttta gccataaacg ggtcgcaaaa tataaatatc ctgaacatat
       61 cgtggtaatc gaaaaactac cgcgcactgc ctcaggtaaa atacaaaagt ttttgttaag
      121 aaaagatatt atgcggcgat taacgcagga tgtctgtgaa gagattgaat aagtttcatc
      181 ttcggggatc acataaaccc ggcgacaaaa cgccgccggg tatttatttt atttcttcag
      241 ttcagccagg cttaaccagg tttgcaccac ggtgtccgga ttcagagaca ggctatcgat
      301 cccctcttcc atcaaccatg cggcaaaatc ttcgtggtcg gacggaccct gaccgcaaat
      361 cccgacatat ttgccctgtt tcttcgcggc acggatagcc atcgacagca atgctttcac
      421 cgcatcgttg cgctcatcga acagttcaga caccacgccg gagtcacgat ccagaccgag
      481 cgccaactgc gtcatgtcgt ttgagccaat tgagaagccg tcgaaatatt cgaggaactg
      541 ctcggccagc aaggcgttgg acgggatttc acacatcatg atgattttca gcccgttctc
      601 accacgcttc agcccctgac gcgccagttc ttcaaccacc gctttcgcct ggtctacggt
      661 acgcacgaac gggatcatga tctcaacgtt ggtcagcccc atgtcgttgc gcacacgttt
      721 cactgcttca cactccagcg cgaagcagtc gcggaagctg tcggaaacat agcggcccgc
      781 gccacggaag ccgagcatcg ggttctcttc atctggctcg taacgctcac caccgaccag
      841 gttggcatat tcgttcgatt taaaatcaga gagacggaca atgacgcgct tcggataaaa
      901 cgcggcaccc agcgtcgcga tcccttcagt cagacgacca acgtaaaatt cacgcggaga
      961 atcaaaacct ttcatcatct cgcggatttc gttttgcaac tgcggttcct gatcgtcaaa
     1021 ctcaagcagt gcgcgtgggt ggacgccaat catacggttg atgataaatt ccagacgcgc
     1081 aagtcccacg ccttcgttcg gcagacaggc gaagtcgaaa gctcgatccg ggttaccgac
     1141 gttcatcatc actttcaacg gcagatccgg catggtttct acgctggagc ttttcacgct
     1201 aaattccagc aactccgcat agacgtaacc ggtatcacct tcggcacaag aaacagtgac
     1261 gttctcaccg tctttcatcc gttctgttgc atcaccacag cccacgaccg ccggaatacc
     1321 cagttcacga gcgatgatcg ccgcgtgaca ggtacgaccg ccacggttgg tgactatggc
     1381 agatgctttc ttcatgatcg gttcccagtc cgggtcggtc atgtcagtga ccagcacgtc
     1441 accaggttcg atgcggttca tttcgctgat gtcatggatg actttcaccg gacccgcacc
     1501 gatgcgatga ccgatagcac ggccttcggc gataatctta ccctgtgaat gcagcgtata
     1561 acgctccatg acctgaccgc gtgagcgcac ggtttccgga cgcgcctgca caatgaacag
     1621 tttgccggtg tggccatctt tcgcccactc aatatccatc gggcgaccgt agtgtttctc
     1681 aatttgtacg gcctgttttg ccagttcctg cacttcttcg ttggtcagcg agaagatgtc
     1741 acgctgttcc tgcggtacgt cttcgatttt aacctgcttg ccgtgctcct gggtcggcgc
     1801 gtaaaccatg cggatttttt tcgaccccat ggtgcggcgc acgatagccg ggcgattcgc
     1861 cgccagtgtc ggtttatgca cgtaaaactc atccgggtta accgccccct gcacgaccat
     1921 ctcaccaagg ccccatgcgg aagtgataaa caccacctgg tcaaagccgg attcggtatc
     1981 aatggagaac atcacgccag aagatgcgag gtcggagcgc accatccgct gaacaccggc
     2041 ggagagcgcc acgccacggt gatcgtaacc ctggtgcaca cgataagaga tggcgcgacc
     2101 gttaaacaga gaagcaaata catgtttcac tgccacgaga acggcgtcaa acccctgaac
     2161 gttgaggaag gtttcctgct gaccggcaaa ggaagcgtcc ggcatatctt ctgcggtggc
     2221 ggaggagcgc accgcaaaag aggcgttttc gtcatcggcg gaaagctgag cataggcttc
     2281 gcggatggcg ttttccagct caggctggaa gggagtgtcg ataatccact ggcggatttg
     2341 cgcgcccgct ttcgcaagct gagtaacatc gtcaatatcc gttttatcca gcagttcata
     2401 aatgcgctgg tttacgccgc tttggtccag aaactggtta aacgcgtcgg cggttgtggc
     2461 gaaaccattc ggaacggaaa cgcccattcc ggaaaggtta gtaatcattt cacccaggga
     2521 ggcatttttg cccccaaccc tgtctacatc attcatgccg agttggttgt accaaagcac
     2581 cagcggtgac gagccattgt tggacatcga acaatccttt tgtgataaat gaacggtttg
     2641 agaaacacat ttctgcgcat ttatctttgc atatttaacc ggatgaaaaa aacggtgaat
     2701 cgttcaagca aatatatttt tttacttttt aagactgatc
//
LOCUS       DAJVSY010000275         2730 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.277, whole genome shotgun sequence.
ACCESSION   DAJVSY010000275 DAJVSY010000000
VERSION     DAJVSY010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2730)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2730)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2730
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.277"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..211)
                     /locus_tag="OQQ19_004146"
     CDS             complement(<1..211)
                     /locus_tag="OQQ19_004146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000589351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805551.1"
                     /translation="MIRFRLYIPPVILGFVIVPLLVWPTVIVLAVLIFTLTFLAEIIF
                     SFPLLVVCISLQELQLELMVEYALFF"
     gene            complement(214..981)
                     /locus_tag="OQQ19_004147"
     CDS             complement(214..981)
                     /locus_tag="OQQ19_004147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001182130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805552.1"
                     /translation="MQPSPAMQALIEQIYHTFRRYRVPQKFVVCCEYCLSQQEQKALR
                     STSLRAIPYSLINAWNSSPGPDPQNSDEVRYFLPRLLEFVAQGHFDNIHVVFSLRRIN
                     LANKENWRADERAILQRFACQYMTDWVSGDEAVELQYMLEMFFRADIALAPLLDAINS
                     VPGFWSTVSLACLLNRYCEDYIRDNQDDIDNVITTQINAWARNNHPLLKERARQAIEN
                     PLKQPEPMTEYQVWEDDWIIDECLCAMYDASSESLGK"
     gene            complement(984..1694)
                     /locus_tag="OQQ19_004148"
     CDS             complement(984..1694)
                     /locus_tag="OQQ19_004148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000424214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805553.1"
                     /translation="MELVNTLFASLAGTDPFTGVDITIANCKSAYWDEGIVQQLINQA
                     LDEGEKFVGADGLEGLLRYDVTLNIGLTSSKVWPGFSLDTATISRLCACGADFGFDPY
                     ISDVPDVQCDLNTTNDVTVQFTAMLNPDERVIIAKRPLKKCDSWIEDVYIFQVFKDAW
                     KFHNNNSLRGFRDKQAELKLYTRHYSVENCAEESCRDCNSCIRPSFSLSRSALIRLNA
                     ANARFVYQPFTRDQRARG"
     gene            complement(1710..2730)
                     /locus_tag="OQQ19_004149"
                     /pseudo
     CDS             complement(1710..2730)
                     /locus_tag="OQQ19_004149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001472437.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="PstS family phosphate ABC transporter
                     substrate-binding protein"
BASE COUNT          754 a          639 c          611 g          726 t
ORIGIN      
        1 tgaaaaaaag tgcatattca accattaact caagttgtaa ttcctgaaga gaaatacaca
       61 caaccaggag cggaaaggag aatattattt ctgccagaaa agttaacgtg aatataagta
      121 cggctaagac aataaccgtc ggccatacca ataatggcac gataacaaaa ccgagaatta
      181 cagggggaat ataaagccgg aatctaatca tttttatttt cctagtgatt cggatgatgc
      241 gtcatacatc gcgcataaac actcatcaat tatccagtca tcttcccaga cctgatattc
      301 tgtcattggt tcgggctgtt ttagcgggtt ctcaatcgct tgccgcgctc tttctttcag
      361 taaaggatga ttatttctag cccaggcatt gatttgggtg gtaatgacgt tatcgatatc
      421 gtcctggtta tctctgatat aatcctcaca atatctgttc aataaacagg caagagaaac
      481 ggtcgaccaa aagccgggaa ctgaattaat ggcatccagc aatggcgcaa gagcgatatc
      541 ggcacggaaa aacatttcca gcatatactg taattcgaca gcttcatcgc cggataccca
      601 atcagtcata tactggcagg caaatcgctg taaaattgcc cgttcatccg cacgccagtt
      661 ttctttgttg gcaaggttga tacggcgcag agaaaaaact acgtgaatat tgtcaaaatg
      721 cccctgtgca acaaattcca gtaaacgcgg cagaaaatag cggacctcat cgctattttg
      781 cggatcaggc cctgggctac tattccaggc attgattaag gaatacggga tcgctcgtaa
      841 cgatgtactc cgtaatgcct tttgttcctg ctgactcagg caatattcac aacaaaccac
      901 aaatttctgc ggcacccgat aacgacgaaa ggtgtgataa atctgctcaa ttaatgcctg
      961 catggcgggg ctgggttgca tagttacccc ctcgcccgct gatcgcgtgt aaacggttga
     1021 tagacaaaac gagcattcgc cgcgttcagg cgaataaggg cgctacgcga aagggaaaag
     1081 ctggggcgaa tgcaactatt gcagtctcga cagctttcct ctgcgcaatt ttccactgag
     1141 taatgacgcg tgtagagttt cagttcggcc tgcttatcgc gaaatccgcg taaactgtta
     1201 ttgttatgaa atttccaggc atctttaaag acctgaaaga tatagacatc ctcaatccag
     1261 gagtcacatt ttttaagcgg gcgctttgct attatcaccc gctcatccgg atttagcatc
     1321 gccgtaaatt gtacggtgac gtcatttgtc gtgttcaggt cacattgaac atctggtaca
     1381 tcactgatat aggggtcaaa tccaaaatca gcaccacagg cacaaagacg gctaatggtg
     1441 gcggtatcga gggaaaatcc cggccatact ttgctggagg ttaagccaat atttaatgtg
     1501 acatcatatc gaagcaatcc ctcaagaccg tcagcaccga cgaacttttc cccttcatcc
     1561 agggcctggt taataagttg ctgaacaatg ccttcatccc agtatgccga tttgcagttg
     1621 gcaatcgtaa tatccacgcc tgtgaaggga tcagtaccgg caaggcttgc aaataatgta
     1681 ttaactaatt ccatttttat tatccagctt taaggtagcg tcttatacat cgggacataa
     1741 cctacatctt ccaccaaact ctgtccctgc ggcgttaaaa accactccaa caatttttgt
     1801 gtctctgacg tcgtattttc ccgcgttacc ataaaggcat cgatgatata gggatatttg
     1861 ccgttgcgaa tgttttcggc agtcggtgca ataccgttaa tcgctagcag ttttatattt
     1921 ttatcggcgt tcatttgtgt tgcgtaataa cggaaggtgt aacctattgc gttgtttgta
     1981 ttacggtatt cggcaacgac tttaatcatt ccctccatca tacttgccac ttctgtttcc
     2041 tgcggcgaga tcatgcggac atttttcatg acctgggatt gcatcaccgt ctggctacca
     2101 gagtcttccg ggcgttgcta ggtctggatc tcctgatcgt taccgccaac agtacgccag
     2161 ttggtaattg caccactgaa gatgtcacgc acctgttgtt cagtcaggga attaaccgga
     2221 ttatccgcat tgacgatgaa aacaaacgct tcacgggcaa aaggcgtgta cagcaaagta
     2281 atgcccgatt cctcagcgcg ttttttctgc ccaccggaag gttgcgccac aaaaataata
     2341 tcagcatcac ctttaacaat cctgttatac gcatcggggg tacgagagct ctccagatat
     2401 tccctggtgt gaaaatcttc cggtataacg ctcaaagcat aaaatgcaga ggcataaatt
     2461 gggtacgccg ccgtagcacc atcgagtcgc ggccagtttt gcgtaaactg aatttgcggt
     2521 ttaccacgca gtggtgtcag ttgattattg agtttatcgg gtcgccaggc ccaggtatca
     2581 atattttcgc gcacaccgac gccgggattg agctgtttat ataaataacc ctgataacca
     2641 gcgacaaaac caagcatgag aaggataaac aggagggaat tacggcaacg tagcccggat
     2701 gtaccggtta aaggatgtct ggttggccgg
//
LOCUS       DAJVSY010000276         2705 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.278, whole genome shotgun sequence.
ACCESSION   DAJVSY010000276 DAJVSY010000000
VERSION     DAJVSY010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2705
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.278"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..2657)
                     /locus_tag="OQQ19_004150"
     CDS             complement(<1..2657)
                     /locus_tag="OQQ19_004150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HCS1805554.1"
                     /translation="MGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVEGPVDGLKS
                     VLLNSTPVLDSEGNTNISGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITR
                     TITSANIDRLRFTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTT
                     SQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALV
                     GVQVDSEQFGSQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTFKPAYSNNMAWCL
                     WDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRK
                     AWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSAL
                     KDRHNAVEVNWIDPDNGWETATELVEDTQAIARYGRNVTKMDAFGCTSRGQAHRAGLW
                     LIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISIGGRVLAVNSQTRTLTLD
                     REITLPSSGTTLISLVDGQGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTL
                     RQRLFRCVSIRENDGGTYAITAVQHVPEKEAIVDNGAHFDGDQSGTVNGVTPPAVQHL
                     TAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVTADDGSERLVSTARTTETTYRFRQ
                     LALGRYMLTVRAVNAWGQLGDPASVSFRIAAPAAPSRIELTPGYFQITATPHLAVYDP
                     TVQFEFWFSEKRITDIRKVETTARYLGTGLYWIAASINIKPGHDYYFYVRSVNTVGKS
                     AFVEAVGQPSDDASGYLDFFKGEIGKTHLAQELWTQIDNGQLAPDLAEIRTSIKDVSN
                     EITQTVNKKLEDQSAAIQQIQKVQVDTNN"
BASE COUNT          526 a          873 c          692 g          614 t
ORIGIN      
        1 ttattatttg tatcaacctg aaccttctgt atctgctgaa ttgccgcact ctggtcttcc
       61 agtttcttat tgacggtctg cgtgatttca ttgctgacat ccttaatgga cgtcctgatt
      121 tcagccaggt caggcgcaag ctgaccgtta tcaatctgcg tccacagctc ctgagccaga
      181 tgggttttcc ctatctcgcc tttgaaaaaa tccagataac cggatgcatc atcactcggc
      241 tgaccaacag cctccacgaa tgccgatttg ccaacggtgt tcacactgcg aacgtaaaaa
      301 taataatcat ggcccggttt gatattgata ctggcggcta tccagtacag ccccgtgcca
      361 agatagcgcg ctgtggtttc aaccttcctg atatcggtaa tccgcttttc cgaaaaccag
      421 aactcaaact gtaccgtcgg gtcataaacg gcaagatgcg gcgtggcggt tatctgaaaa
      481 tagcccggcg tcagctcaat ccgcgacggc gctgccggtg cggcaatccg gaacgatacc
      541 gacgccggat cgcccagctg tccccacgca tttaccgccc ggaccgtcaa catgtaacgc
      601 cccagcgcca gctgcctgaa gcggtatgtg gtttccgtcg tccgggccgt gctgaccagc
      661 cgctcactgc catcgtccgc tgtcacggtc aggcgaagca ggaagctcac gcccttcacc
      721 accttcggcg tgtcccagcg ggccagtacc tgatactccc cgctgtctgc ggtgacttcg
      781 gcagtcaggt gctgcaccgc tggcggcgtg acaccattca ccgtgccgct ctggtcgccg
      841 tcaaagtgcg ccccgttatc cacgatggct tctttttccg gtacatgctg cacggcggtg
      901 atggcatacg tgccgccatc gttctcacgg atactcacgc agcggaacag gcgctggcgc
      961 agcgtcggca gcttcagccc ccacacgctg tattcggcaa cgccgtcagg aacacggctc
     1021 actttcacct tcacgccgtc ggtgacggac tggacctcca cgctgaccgg attcccctgt
     1081 ccgtcaacca ggcttatcag cgtggtgccg gaggatggca gcgtgatttc acggtcgagc
     1141 gtcagtgtcc gcgtctggct gttcaccgcc agcacgcgcc cgccgatgct gataccggca
     1201 tagtcatcat cacagatttc aatgacatcg cccggtacat ggcgaagccc ttctgcaccc
     1261 acgctgaagt ccacggtctg cgtttccagc agctccgttt taatcagcca cagcccggcg
     1321 cggtgtgcct gcccccggct ggtacagcca aaggcatcca tcttcgtgac gttacgaccg
     1381 taacgggcaa tggcctgcgt atcttcaaca agctctgtcg ccgtctccca gccgttatcc
     1441 gggtcaatcc agttcacctc aacggcatta tggcggtcct tcagggcgct gaagctgtag
     1501 cggaacggcg cgccatcatc cggcatcacc acattactgc ggttataggt ccacacctta
     1561 tccgacggtc ggtcctgcac gaacgtcagc gtctgcccgt tccataccgg catacagcgc
     1621 atcgccgaac agaaatcact gagcacatcc cacgccttac gctgtgtggt caggtaagcg
     1681 ttacaggtga tgcgcggctc cgtgccacca aagccatccg gcactgactg gtcgcagtac
     1741 tggccgatga catacagcgc ccatttgtcc acatccgccg caccaagacg tttccccatg
     1801 ccgtagcgtg gatgggtcag catatcccac agacaccagg ccatgttatt gctgtatgct
     1861 ggcttaaacg ttccgtccca gataccgctg tattgccgag tctgcgggtt atagttcgac
     1921 ggcacctgca gaatacgccc gcgcagatga taattacggc tcacctgctg gctgccgaac
     1981 tgctccgaat ccacctgtac gccgaccagt gccgtgttcg ggtagcactg tttcacatcg
     2041 atgatttcgg tgtatgacga ccagagcgtt ttgttctgca gctggtctgt ggtgctgtcc
     2101 ggcgtcatcc tgcgcatccg gatattgaac gggcgcggcg gcaggttacc caccaccacc
     2161 gatgctagat actgtgaggt ggttttgcct ttaatggtga tgtctttttc cgtcacccag
     2221 ccaccattac gctgtatctg aaccagcagg cggacttccg acggattccg gtcccccttt
     2281 gaggtggttt ccaccagtgc ctgcacaccg aaggtaaagc gcagacggtc gatgtttgcc
     2341 gacgtgatgg tccgggtaat cggcgtgtcg tacttcactt ccgtacccag caccgtctcg
     2401 gagccggagg attcaaatcc ctccggcggt gtctgctcct gctcaccggc ccggaacacc
     2461 accgtgacgc cggatatatt ggtattcccc tcactgtcca gcaccggcgt actgttcagc
     2521 agcacgcttt ttaatccatc caccggacct tcaaccggcc cttcgctgat ggcatcgatc
     2581 acactcagca gctgcgtgga cttcaggttg tccttcgctt cgcgcggggt atgcccctta
     2641 ctgcttcctt tacccattcc tcacactcca taaacaacaa agccgcccaa aaggcggctc
     2701 atgag
//
LOCUS       DAJVSY010000277         2668 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.279, whole genome shotgun sequence.
ACCESSION   DAJVSY010000277 DAJVSY010000000
VERSION     DAJVSY010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2668)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2668)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2668
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.279"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            45..770
                     /locus_tag="OQQ19_004151"
     CDS             45..770
                     /locus_tag="OQQ19_004151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005112197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HCS1805555.1"
                     /translation="MKILNSNLITNISSTIRNHLLTSSKNIKTPPSPNMDVTSHRRLF
                     QKDGIGLSQTGKATQLVIMSHGGWKEISHPQTLFTRQKGDGWTVVPKNLRIDFYTKDN
                     DFTKGLSVLSEVNKRHTEAQKGLTPSLNISKDDLKVLANARNIPQSKLEEEMMSQAIY
                     RKEYATSNEKIKNYALYYHEQAQNIIQRHQDGLGNKNIDIAFITDKNHKKHLSDIFKV
                     INESGVKYDVIHFGACRVNREEK"
     gene            complement(996..1319)
                     /locus_tag="OQQ19_004152"
     CDS             complement(996..1319)
                     /locus_tag="OQQ19_004152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nikA protein"
                     /protein_id="HCS1805556.1"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLR
                     AAALGKNVNSLTDDRVLKEVMRLGALQKKLFIDGKRIGDREYAEVLIAITEYHRALLS
                     RLMAD"
     gene            1592..1786
                     /locus_tag="OQQ19_004153"
     CDS             1592..1786
                     /locus_tag="OQQ19_004153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="HCS1805557.1"
                     /translation="MNKQQQAVLNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHEL
                     AEELQNSIQTRFEVENSTER"
BASE COUNT          863 a          657 c          563 g          585 t
ORIGIN      
        1 aaaaaaaaac aataaaaaac accgcaaaaa tggattgtta acaaatgaaa atactcaatt
       61 cgaatctcat aacaaacata tcatcaacaa taagaaatca ccttctaaca tcatccaaaa
      121 atataaaaac acccccatca ccaaacatgg acgtaacaag tcatcgtcgt ttattccaga
      181 aagacggaat aggattgagc caaacaggaa aagcaacaca acttgtcatt atgtcgcatg
      241 gtggatggaa agagatctcc catccacaaa cactattcac gcgtcaaaaa ggcgatggat
      301 ggactgtagt ccccaaaaac ctaagaattg atttttatac aaaagacaac gacttcacaa
      361 agggactaag cgttctttca gaggtaaaca aacgccatac tgaagctcaa aaagggttaa
      421 caccatcact aaacataagc aaagatgacc taaaagttct agcgaacgcg cgcaatatac
      481 ctcaatcaaa attagaagaa gaaatgatgt cacaagccat atatagaaaa gaatacgcaa
      541 caagtaatga gaagataaaa aactatgctc tatattacca tgaacaagcc caaaatatta
      601 tacaaagaca tcaagatggc ttaggaaaca aaaatattga tatagcattt ataactgata
      661 aaaatcataa gaagcacctt tctgacatat ttaaagtaat aaatgaatca ggagtaaaat
      721 atgatgtaat tcactttggc gcttgccgag taaatagaga ggagaaataa tcatcattta
      781 ccataatccc ttaattgtac gcaccactga aacgcgctga acgcgattct gacgcagaca
      841 ccacaaaaat agatgtttta ccccggaaaa acaggaagga tgcgtcagga tcgttttcag
      901 ctcgctgcat agctatgcat gaaagcgaat ggagatcact ttgggagctt accgtgttca
      961 taccgtctgt tttcaacagt tttctccccg ggaagctaat ctgccataag cctggataac
     1021 agggcacggt gatactccgt aatagcgatc agcacctccg catactccct gtccccgata
     1081 cgcttgccgt cgataaagag ttttttctgt aacgccccca gtctcataac ttctttcagt
     1141 acccgatcat cagtcagtga gttaacgttc ttaccgagag ctgccgcccg taaaaaaccg
     1201 gaaacggtct tgccgcattc agcagccctt tttctgattt cctggtcttc ttctgccgtc
     1261 agacgaacag ggcgactgat agcccgcctg cgcgtattac ttccacttcg ttttgtcata
     1321 aaacatggct ccgtatctga catgggtgtc ggggcaaagc cctgaccagg gcaattgtaa
     1381 tagcgtgcat gtatgcgcgg tataacaatt gcacatcctg tcctgtcagc aagctcgaat
     1441 taccgacaaa ggcacggcag ttttttggca gttacagtgt tgtctgacag aaatacccgt
     1501 caaaaagcca ggcggcagca aaacagtcga aaagtggtac gcgatataat cacataacgc
     1561 agatgacaga cagaacggag aaaacgaaaa gatgaacaag cagcagcaag ccgtactcaa
     1621 catggcggga ttcataaaaa gccagagcct gacgctgctc gaaaaactgg acgcactcga
     1681 tgctgacgag caggccacca tgtgtgagaa actacacgaa ctcgcagaag aactccagaa
     1741 cagcatacag acacgctttg aagtagaaaa tagcacagag agataacgct caggacagga
     1801 tgtcgaacgg cacaacagag cgtaaggaga aaatgtcaca taaggcgctc ttccgcttcc
     1861 tcgctcactg actcgctacg ctcggtcgtt cgactgcggc gagcggtatc agctcactca
     1921 aaggcggtaa tgcggttatc cacagaatca ggggataacg ccggaaagaa catgtgagca
     1981 aaaagccgaa ggcagggaca aaggccgcgc aggtggcgtt tttccatagg ctccgccccc
     2041 ctgacgagca tcacaaaaat cgacgctcaa gtcagaggtg gcgaaacccg acaggactat
     2101 aaagatacca ggcgtttccc cctggaagct ccctcgtgcg ctctcctgtt ccgaccctgc
     2161 cgcttaccgg atacctgtcc gcctttctcc cttcgggaag cgtggcgctt tctcatagct
     2221 cacgctgttg gtatctcagt tcggtgtagg tcgttcgctc caagctgggc tgtgtgcacg
     2281 aaccccccgt tcagcccgac cgctgcgcct tatccggtaa ctatcgtctt gagtccaacc
     2341 cggtaagaca cgaattatcg ccactggcag cagccactga taaccgaatt agaggagtaa
     2401 gacttgaagt catgcgcctg ttaaggctaa actgaaagaa caagttttgg tgactgcgct
     2461 cctccaagcc agttacctcg gctcaaagag ttggtatctc tgagaacctt cgaaaaaccg
     2521 ccttgcaggg cggttttttc gtttacaggc agtagattac gcgcagaaaa aaaggatctc
     2581 aagaagaacc tttaattttt tttcacactt ggtatcctac tttaacccat aaaataaaca
     2641 cttacaccga cacgccctta aacaaaag
//
LOCUS       DAJVSY010000278         2579 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.280, whole genome shotgun sequence.
ACCESSION   DAJVSY010000278 DAJVSY010000000
VERSION     DAJVSY010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2579)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2579)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2579
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.280"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..2269
                     /locus_tag="OQQ19_004154"
     CDS             <1..2269
                     /locus_tag="OQQ19_004154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
                     /protein_id="HCS1805558.1"
                     /translation="KKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEK
                     DDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFT
                     NYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQASSWNTISSYLQ
                     RDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSA
                     IVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPM
                     MQRPRHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALG
                     IGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYT
                     NDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNI
                     SVGVSGQQWGIGYSLNYQYSRYTDENNDRALSLNLSIPLERWLPRSRVSYQMTSQKDR
                     PTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSS
                     QYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVIPY
                     LTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNG
                     KPLPFGALASNDDTGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFNTPD
                     SEPTTSVLQGTAQCH"
     gene            2280..>2579
                     /locus_tag="OQQ19_004155"
     CDS             2280..>2579
                     /locus_tag="OQQ19_004155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1805559.1"
                     /translation="MKRAPLITGLLLISTSCAYASSGGCGADSTSGATNYSSVVDDVT
                     VNQTDNVTGREFTSATLSSTNWQYACSCSAGKAVKLVYMVSPVLTTTGHQTGYYKL"
BASE COUNT          718 a          625 c          603 g          633 t
ORIGIN      
        1 taaaaagaag gtttcacaga aaaaaattac atttaccgcc aatgcagagc aacttctgca
       61 gccacagttt acggtagaac aactacgtga gctgggtatt aaggtggatg aaatcccggc
      121 gctggctgaa aaagatgacg atagcgtgat caactcgctt gaacaaatca ttcccggtac
      181 agctgctgaa tttgatttca atcatcagcg acttaatttg agcattcccc aaattgcact
      241 gtaccgtgat gcaagaggtt acgtctcccc ttctcgttgg gacgatggta taccaacgct
      301 gtttaccaac tactcgttta caggttctga taaccgttac cgccagggca atcgtagcca
      361 acgacagtac ctgaatatgc aaaatggtgc taattttggc ccctggcgat tacgtaacta
      421 ttctacgtgg acacgcaacg atcaggcgtc aagctggaac actatcagta gttatttaca
      481 acgtgatatc aaggcgttga agtctcagtt gcttctggga gaaagcgcca ccagcggcag
      541 tattttttcc agctacacct ttactggcgt gcaactcgct tccgacgata atatgttgcc
      601 aaacagccag cgcggatttg ccccaacggt acgcggtatc gcaaacagta gtgcaatcgt
      661 gactatcagg caaaatggtt atgtgatcta tcaaagcaac gtgccagcgg gtgcctttga
      721 aattaacgat ctctacccct cttccaacag cggcgattta gaagtcacga ttgaagaaag
      781 tgacggtaca caacgtcgct ttatccagcc ttattcttca ttacccatga tgcagcgacc
      841 taggcatcta aaatatagcg cgaccgctgg acgctatcgc gctgatgcaa acagtgatag
      901 caaggaaccc gaatttgctg aagccacggc aatatatggt ttgaataata cttttacgct
      961 gtatggcggc ctgctcggtt ctgaagatta ttatgcgctg gggatcggta tcggcggcac
     1021 acttggcgca ctgggcgcgt tgtcgatgga tatcaacaga gctgacaccc aattcgataa
     1081 ccagcactct tttcatggct atcaatggcg tacgcagtac atcaaagata tcccggaaac
     1141 caacaccaat atcgctgtta gctactatcg ctataccaac gatggctatt ttagttttga
     1201 tgaagccaat acccgcaatt gggactataa cagtcgccaa aaaagtgaaa ttcaattcaa
     1261 catcagccag acaatatttg atggggtaag tctgtatgcc tccggttcgc agcaagacta
     1321 ttggggcaat aacgagaaaa acaggaatat ctctgttggg gtttccggcc agcaatgggg
     1381 aattggttac agcctgaatt atcaatacag ccgctacact gatgaaaata atgaccgtgc
     1441 actctctttg aatctcagta ttccgttaga acgctggtta ccgcgtagcc gggtttccta
     1501 tcagatgacc agccagaaag atcgcccaac ccaacatgaa atgcgtcttg atggctcact
     1561 gctggatgat ggtcgcctga gctatagcct ggaacaaagt ctggatgacg ataacaacca
     1621 taacagtagc ctgaacgcca gttaccgttc accttatgga accttcagtg ccggatacag
     1681 ttacggtaat gacagcagcc aatacaatta cggcgttacc ggcggcgtgg ttatccatcc
     1741 tcatggcgtg acgctctcgc aatatctggg caacgctttt gcgcttatcg atgctaacgg
     1801 ggcttctggc gtgaggatac aaaactatcc ggggattgct actgatccct ttggctatgc
     1861 agtgattcct tatctcacga cttatcagga aaaccgtctc tcggtagata ctacgcagct
     1921 gcccgataac gtcgatcttg aacaaacaac acagtttgtg gtgcccaaca gaggtgcaat
     1981 ggtagcggcg cgtttcaacg ccaatatcgg ttatcgcgta cttgttacag tcagcgatcg
     2041 caacggtaaa ccgttgccct ttggcgctct tgccagcaac gatgatacgg ggcaacaaag
     2101 tatcgtcgat gagggcggca tactatatct ctctgggata tcgagtaaat cacaaagctg
     2161 gactgtacgc tggggaaatc aggcagatca acaatgtcag tttgctttta atacaccgga
     2221 ttcagaacca acaacctctg tattacaagg cacagcgcag tgccattaag gataaaaaaa
     2281 tgaaaagagc gcctcttata acaggacttt tgttgatatc cacatcctgc gcttatgcct
     2341 cctcaggagg gtgtggagcc gacagcacta gcggtgcgac aaattacagc agtgtggttg
     2401 atgatgttac ggtgaaccag acagataacg tgacaggacg ggagtttacc tctgcaacgc
     2461 taagtagcac taactggcaa tacgcctgtt cctgctctgc gggtaaggca gttaaacttg
     2521 tctatatggt cagccccgta cttaccacca ctggacatca gacaggatat tacaaactc
//
LOCUS       DAJVSY010000279         2538 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.281, whole genome shotgun sequence.
ACCESSION   DAJVSY010000279 DAJVSY010000000
VERSION     DAJVSY010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2538)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2538)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2538
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.281"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            122..574
                     /gene="yeeE"
                     /locus_tag="OQQ19_004156"
                     /pseudo
     CDS             122..574
                     /gene="yeeE"
                     /locus_tag="OQQ19_004156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416517.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transport protein YeeE"
     gene            588..815
                     /locus_tag="OQQ19_004157"
     CDS             588..815
                     /locus_tag="OQQ19_004157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HCS1805560.1"
                     /translation="MAIKKLDVVTQVCPFPLIEAKAALAEMASGDELVIEFDCTQATE
                     AIPQWAAEEGHAITDYQQIGDAAWSITVQKA"
     gene            complement(858..2282)
                     /gene="sbcB"
                     /locus_tag="OQQ19_004158"
     CDS             complement(858..2282)
                     /gene="sbcB"
                     /locus_tag="OQQ19_004158"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease I"
                     /protein_id="HCS1805561.1"
                     /translation="MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGE
                     PEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYN
                     NVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
                     PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMA
                     LIDVPQMPPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSD
                     TLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLK
                     ILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPA
                     LDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLV
                     QQYADDKEKVALLKALWQYAEEIV"
BASE COUNT          614 a          601 c          658 g          665 t
ORIGIN      
        1 cattataacg aatggcatcc gcatagtgcg ctgggttatc gctcgccacg ggaatatctg
       61 cggcagcggg cttgtaatgg gttaagtgat aacagatgtc tggaaatata ggggcaaatc
      121 cactgctgta ctcatcggtt tgattgcgct tttagcctgg cccctgagtg aagcaaccgg
      181 acgcatgttt gggttaggaa tcacttcccc aacggccaat attctgcaat ttctggtcgc
      241 gggtgacgtg aaatacatta actggggcgt tttcctggtg ttagggatct tcgtggggtc
      301 atttattgca gccaaagcga gccgtgagtt ccgcgttcgc gcagctgatg cacaaacaac
      361 attacgtagc gggttaggtg gtgtactgat gggcttcggt gccagtattg caggtggttg
      421 ctctatcggt aatggactgg ttatgactgc aatgatgacc tggcagggct ggattggcct
      481 tgtatttatg attctcggag tctggactgc atcctggctt gtgtatgttc gaccgcagcg
      541 taaggcgcga ctggcgactg ctgcggcaaa ttaagtaagg tgtaaagatg gcgattaaaa
      601 agctggatgt ggtgacgcag gtctgtccgt ttccactcat agaagcaaaa gcagcactgg
      661 cagaaatggc cagcggcgat gagttggtaa ttgagtttga ttgcacccag gcaactgaag
      721 caatcccaca gtgggcggca gaagaaggac atgccatcac cgattatcag cagattggcg
      781 atgcagcgtg gagcatcacc gttcaaaaag cctgactcaa cattgtcctc cgccgtacca
      841 gcggcggagg cttcaaatta gacgatctct tccgcgtact gccaaagtgc ttttaacagc
      901 gccacttttt ctttgtcatc ggcatattgt tgtaccagca tctgcaattc atcagcataa
      961 ccctgcaaaa actctggcgt gaatacctgg cggcggtgct ccagccagcg ttgctgctcg
     1021 gcataatcca gcgtccccgg gaagttgcgt gcccgataat tgaacaacag cttttcaatc
     1081 cgtttatcaa caaaagtgat atccagtgcc ggtaaattac gtggctcggt ttccagcaca
     1141 attttcattg ctgcacgatc tgcgtcactg aaaaagccgt tataaagctg tgcatccacg
     1201 ttatctgtag gcgtaaacgg ttcggcttcc gcgaatatcg ccaccacttt ttcacgcact
     1261 tgcggatttt cacgcagaat tttcaggtta tcgaggcaat gctgacgatt aattcccagt
     1321 cggtcggcat cttccgggcg tagcgtattc gcctgggcca gcaccggaca tttattgatg
     1381 tgcaccagct taaccggaac ggcggcgtta tcgccaagat cggtttttgc ggtatataaa
     1441 cgctcgcgca atgtgtcgct atccagttcc agtaatggcg aaatgtctcc tgccaaatcc
     1501 accataatta cagcattgcg attttcagga tgccacgcca gcggtgccac ccagctggta
     1561 ttgccgcgcc atgccccaaa cattccggaa acgtgaacca gggggggcat ctgcggaaca
     1621 tcaatcaacg ccatcagttt gtgtttatta cgatgggtaa agagataatc aaacaggcgt
     1681 ggctgacgcg tttttaccag tttcgccatc gcaatagtgg cgtacacatc agccatcgca
     1741 tcgtgggcgt tgctatgttc aataccattc gctttggtta aatgctcaag gcgaaagctc
     1801 ggtagaccgt catcattttc aggccagttt attccttccg ggcgcagggc ataacaggca
     1861 cgcataacat ccaacaaatc ccagcgcgag ttatcatgct gccagctcca ggcgtaagga
     1921 tcgtagaaat tacgataaaa aacgttgcgt gtgacttcgt cgtcgaaacg cacattgttg
     1981 tagcccagaa tacaggtctt cggtacggta aaaagcgagt gaatacgggc ggcaaacgcg
     2041 gcttcgtttt ctcctttcgc ccgtgcttcc tgcggggtaa taccggtaat taatactgct
     2101 ccaggctggg gtaaatagtc atccgcgggc ttgcagtaaa agacttcggg ttcgccgatg
     2161 acattgaatt cgctatcggt gcgaatggct gcgaactgtg cagggcgatc taacgcgggg
     2221 tgcgtgccaa aggtttcgta atcgtgaaag aggaaggtag gttgtttatc tgtgtctgtc
     2281 attgtctagc attgtccact gtagttaatt aactgtctgt tataactcga aaaacaacca
     2341 ttttttcacc tgagtatgtc tacgaacgtc aaatatagtt gtttactgtg cgctgttgtc
     2401 catgtgatat tgtgtaccag atgtgtacca aaccattatt tctgagcgta ccaaatatta
     2461 tttatggcta taagcgacac aaaactgcgt agtatttatg gtaaaccata ttcgggccca
     2521 caagaagtgg ctgatgcc
//
LOCUS       DAJVSY010000280         2468 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.282, whole genome shotgun sequence.
ACCESSION   DAJVSY010000280 DAJVSY010000000
VERSION     DAJVSY010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2468)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2468)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2468
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.282"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            128..1264
                     /gene="potA"
                     /locus_tag="OQQ19_004159"
     CDS             128..1264
                     /gene="potA"
                     /locus_tag="OQQ19_004159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     ATP-binding protein PotA"
                     /protein_id="HCS1805562.1"
                     /translation="MGQSKKLNKQPSSLSPLVQLAGIRKCFDGKEVIPQLDLTINNGE
                     FLTLLGPSGCGKTTVLRLIAGLETVDSGRIMLDNEDITHVPAENRYVNTVFQSYALFP
                     HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLETFAQRKPHQLSGGQQQRVAIAR
                     AVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI
                     VVMREGRIEQDGTPREIYEEPKNLFVAGFIGEINMFNATVIERLDEQRVRANVEGREC
                     NIYVNFAVEPGQKLHVLLRPEDLRVEEINDDNHAEGLIGYVRERNYKGMTLESVVELE
                     NGKMVMVSEFFNEDDPDFDHSLDQKMAINWVESWEVVLADEEHK"
     gene            1248..2111
                     /gene="potB"
                     /locus_tag="OQQ19_004160"
     CDS             1248..2111
                     /gene="potB"
                     /locus_tag="OQQ19_004160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309597.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotB"
                     /protein_id="HCS1805563.1"
                     /translation="MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFV
                     KMVFTLDNYTRLLDPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLL
                     FLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYI
                     LLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPA
                     MGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASR
                     LLNKKVSELDD"
     gene            complement(2343..2414)
                     /locus_tag="OQQ19_004161"
                     /pseudo
     CDS             complement(2343..2414)
                     /locus_tag="OQQ19_004161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001387760.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
BASE COUNT          592 a          606 c          622 g          648 t
ORIGIN      
        1 ctaagccagt aattcacaac aaagattggc gattcaagcg gtttgccgta gaattaccgc
       61 cctcattaag agtcaccaag gtggttaacc acaaaccccg catcggtaag ccatccgttg
      121 cgtttacatg ggacagagta aaaaattgaa taaacaaccg agttcgcttt caccgctggt
      181 gcaattggcg ggaattcgca aatgctttga tggtaaagag gtcattcccc agctggatct
      241 gactatcaac aatggcgagt tcctcacgct gcttggccct tctggctgcg gtaaaacaac
      301 cgttcttcgc ctgattgcag gtctggaaac tgttgattcc ggacgcatca tgctggataa
      361 cgaggacatc acccacgttc cggcggaaaa ccgctatgtg aacactgttt tccaaagcta
      421 cgcacttttc ccccacatga ccgtgttcga aaatgtggcc tttgggttgc gcatgcaaaa
      481 aacccccgct gctgaaatta cgccccgcgt gatggaagcc ctgcggatgg tgcaactgga
      541 aaccttcgct caacgtaaac cgcatcagct ctctggtggt caacagcaac gcgtcgccat
      601 tgctcgcgcg gtggttaaca agcctcgtct gttgttgctg gatgagtcgc tctcagcgct
      661 ggattacaaa ctgcgtaagc aaatgcagaa cgagctgaaa gcgttacagc gtaagcttgg
      721 cattacattc gtcttcgtga ctcacgacca ggaagaagca ctcaccatgt cagacaggat
      781 tgtggtgatg cgcgagggtc gcattgagca agacggcacg ccgcgtgaaa tctacgaaga
      841 gccgaaaaac ctgtttgttg ccggcttcat tggcgaaatt aatatgttta acgccacggt
      901 gatcgagcga ctcgacgagc agcgcgtacg cgccaacgtt gaaggccgcg aatgtaatat
      961 ctacgttaac ttcgccgttg aaccggggca aaaactgcat gttctgctgc gcccggaaga
     1021 cttacgtgtt gaagagatta acgacgacaa ccacgctgaa gggctgattg gttacgttcg
     1081 tgagcgtaac tacaaaggca tgacgctgga gtcggttgtt gaactggaaa atggcaagat
     1141 ggtgatggtc agcgaattct tcaatgaaga cgatcctgac tttgaccact ctctcgacca
     1201 aaaaatggcc attaattggg tagaaagctg ggaggtcgta ctggctgatg aagaacacaa
     1261 gtaagttcca gaatgtagtg attgtcacta ttgtcggttg gcttgtgttg tttgtctttc
     1321 tgcccaacct gatgatcatt ggcaccagct ttttgacccg cgacgacgcc agtttcgtca
     1381 aaatggtctt tacgctggat aactacacgc gtctgctcga tccgctctat tttgaagtgc
     1441 tattgcactc gctgaatatg gcgctgatcg ccaccctcgc ctgcctggtg ctgggctatc
     1501 catttgcctg gtttctggcg aagctgccac acaaggtgcg tccgctgctg ctgtttctgc
     1561 tgattgttcc gttctggacc aactcattga ttcgtatcta cgggctgaaa attttcctca
     1621 gcaccaaagg ctatctcaac gagtttttgc tctggctggg cgttatcgac acaccaatcc
     1681 gtatcatgtt cacgcccagt gcggtgatta tcggtctggt ttacattctg ctgccgttta
     1741 tggtgatgcc gctgtactcc agtatcgaaa aactggataa gccgttgctt gaggcggcgc
     1801 gcgatctcgg tgccagcaag ttacagactt ttatccgcat cattattcca ctgacgatgc
     1861 cggggattat tgccggatgt ctgctggtga tgctgccagc gatgggcctg ttctatgtgt
     1921 ccgacctgat gggcggtgcg aaaaacctgc tgatcggtaa cgtcatcaag gtacagttcc
     1981 tcaatattcg tgactggccg tttggtgcag ccaccagcat tacgctgact atcgtaatgg
     2041 gcctgatgtt gctggtttac tggcgcgctt ctcgtttgct gaataagaag gtgagcgaat
     2101 tagatgatta atcatttata ttcaatgcat taagtttgtt tttgagtggt tttgccgttt
     2161 aaggtaacgg cgttatagat cctatcaaaa tcaatcaatt ccattctggt tttggcgaaa
     2221 gatttttcga gagcttcggt ctttaactaa aactgattgc gtataacccc aatacccctc
     2281 cccgactatc tgaatggtcg gggaggcact tcacgcacaa aatatcatcc ctgcgccgtt
     2341 gattactctg caggtgaagt cggccactca atatcaggtg cagttgatgt atcaacacgg
     2401 ttcagcaaca cctgaagtgg cacactgaat ttggccacct gaacagaggt gatatgctca
     2461 cctcagaa
//
LOCUS       DAJVSY010000281         2444 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.283, whole genome shotgun sequence.
ACCESSION   DAJVSY010000281 DAJVSY010000000
VERSION     DAJVSY010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2444
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.283"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..753)
                     /locus_tag="OQQ19_004162"
     CDS             complement(<1..753)
                     /locus_tag="OQQ19_004162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HCS1805564.1"
                     /translation="MRVLLRPVLVPELGLVVLKPGRESMPVFHNTRVLVEPEPKSMRN
                     LPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHH
                     SETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERE
                     LSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQR
                     TKNLALLPHAHQQQNPPQEETVVSIAVDPESPA"
     gene            complement(755..1033)
                     /locus_tag="OQQ19_004163"
     CDS             complement(755..1033)
                     /locus_tag="OQQ19_004163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805565.1"
                     /translation="MAHDTKFYNSDNSAAPASRHGRRSHAFKSDWYQHDPCTEEQAEW
                     LIQRYRRHGYEIKKALSLDYRHWIIFVRLPYSERPPRPSCTFQQRIWR"
     gene            complement(1201..1356)
                     /gene="hokD"
                     /locus_tag="OQQ19_004164"
     CDS             complement(1201..1356)
                     /gene="hokD"
                     /locus_tag="OQQ19_004164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokD"
                     /protein_id="HCS1805566.1"
                     /translation="MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVF
                     TAYEPEE"
     gene            complement(2008..2424)
                     /locus_tag="OQQ19_004165"
     CDS             complement(2008..2424)
                     /locus_tag="OQQ19_004165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805567.1"
                     /translation="MTELTKEQLIEEAKLKIAITKCHPNSGMARVEGELFKIARASLE
                     AEPIAWRYRYVKKGVMDSQGELWVGDWKYVPKKEDCNDRPNYEIQALFTAPPVPVTSE
                     ELVKAVHFYEQLKRENPPASGNQINGLTMSVKRPAN"
BASE COUNT          579 a          639 c          572 g          654 t
ORIGIN      
        1 agccggagat tccggatcaa cggcaatgct gaccaccgtc tcttcctgtg gtggattctg
       61 ttgctggtgg gcgtgaggca gcagcgcaag attttttgtg cgctgcttca gtatgctggt
      121 ggcggtctgc tctcccggca cgatgtcgct ttcacggtac attgagcgga ttttttccgc
      181 acgcaacccc agcgaacgac gtaatactgc ttccggtagc gcgtccgcca cctgattgcg
      241 gaccgcccac caggataatt cagccagaga taattcacgc tcctgcgtac cgcttattgc
      301 gtgaccgatg acgtcaatca tccatgctga caggttttga tgagcaagtt gctcgagtga
      361 ttcggatgtc tggtcacgca actggttgtc gcagtgccag cacaacacca ttgcgccggt
      421 accataacgg tgaatgacgg tttcgctgtg atgataatcg ccgtgtggcc actggcagga
      481 tttaatatgg cgcaacagcc agtcagacaa tgcaccagca ccaccagcag cacgaatcac
      541 ccgtgcgtta ctgaaaaacg gcagcaatgt tttgtcttcc actagcggct ggcgaacggc
      601 aggaacgacc ccggacggca gattacgcat gcttttcggt tccggctcca ccagtacccg
      661 ggtattgtgg aataccggca tggattcacg gcctggctta aggaccacca gcccgagttc
      721 cggaaccaga acaggtcgaa gtaatacccg cacattacct ccagatccgt tgctggaatg
      781 tgcaggacgg acgcggtggc cgttcggaat aagggagcct gacgaagatt atccagtgac
      841 gataatcgag actgagggct ttcttaatct cgtatccgtg tctgcggtag cgctgaatca
      901 gccattcagc ctgttcttcg gtgcaggggt cgtgctgata ccagtcagat ttgaatgcat
      961 gagaacgccg cccgtgcctg ctggcaggcg cggcagagtt atccgaattg taaaatttgg
     1021 tatcgtgcgc catctgtttt ctctgctggc gcagcaggtg ccagttgttc aggctgacgg
     1081 atggattgta aaccagaacg accagaaaaa acaaaacccg ccgaagcggg ttaagtgcgg
     1141 gtgcgttgag gatgcctgac acatcagcgg tggcgaggga tttctccccc gccgggtctc
     1201 ttactcctca ggttcgtaag ctgtgaagac agcgacctcc gtctggccgg ttcggattcg
     1261 tacctcgcag aggtctttcc tcgttaccag tgccgtcact atgacggtta aacagatgac
     1321 gataagggcg attaacatcg ccttttgctg cttcatagcc tgcttctcct tgcctttcgg
     1381 cacgtaagag gctaacctac atgtgttcag catggattga gcctcagatt aatgttaagc
     1441 gtcttgcagg acgcgtagtg ttaactgggg cttttctcta tctgcctttt ggtgttcatg
     1501 cctgagacag atagcctcaa gcacccgcag tcattctact taactaagat ttccctgcaa
     1561 accgtttttg tccggcacag taaatatcca actaaaccaa tagcgttcgc tgtatttacc
     1621 gccagtattc aatgcacatg accgccatga acacccctaa aaaaagggca tttatatgtc
     1681 caaacattaa tatcaaaaca tcaatttttt ccatatacct tgctgtgaag atgatgggca
     1741 tacatgatgc gaacaaccag aacgcaacaa acaaaaactg caatgcgttt ttcattattc
     1801 cccctacaat caatgtgcaa taacatttaa acacacctca atttggccgg acatataaat
     1861 atctaaacca gaaaaaatca cttacatagc gttacaaact ctttagtcta aatactcatc
     1921 gtaaaacatt ccccatactt atcagtccgt tccgcgccag gtagcttatt gccttatctg
     1981 gcaacctata atcaggtttc cgctttttca gttggctggt cgtttaaccg acatagttaa
     2041 cccattaatc tggttgccgg atgctggtgg attttcgcgt tttagttgtt cataaaagtg
     2101 cacagcttta accagttctt ctgatgtaac cgggactggt ggggcagtga ataaggcctg
     2161 aatttcatag ttcggcctgt cgttacaatc ctcttttttc ggtacatatt tccagtcacc
     2221 aacccacaac tccccctgag agtccataac accttttttc acgtagcgat atcgccacgc
     2281 tatcggctct gcttccagcg atgcccgtgc aattttgaat aactcgccct ctactcgcgc
     2341 catccctgaa ttggggtggc atttcgtaat cgctattttt aatttggctt cttcgattaa
     2401 ttgttctttt gttaattcag tcattttcat taccgccctt tcag
//
LOCUS       DAJVSY010000282         2369 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.284, whole genome shotgun sequence.
ACCESSION   DAJVSY010000282 DAJVSY010000000
VERSION     DAJVSY010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2369
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.284"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..73)
                     /gene="csgC"
                     /locus_tag="OQQ19_004166"
     CDS             complement(<1..73)
                     /gene="csgC"
                     /locus_tag="OQQ19_004166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309448.1"
                     /note="involved in autoagglutination of curliated cells;
                     not involved in production of curli fibers; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curli assembly protein CsgC"
                     /protein_id="HCS1805568.1"
                     /translation="MNALLLLAALSSQITFNTTQQGDV"
     gene            complement(132..587)
                     /gene="csgA"
                     /locus_tag="OQQ19_004167"
     CDS             complement(132..587)
                     /gene="csgA"
                     /locus_tag="OQQ19_004167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curlin major subunit CsgA"
                     /protein_id="HCS1805569.1"
                     /translation="MKLLKVAAIAAIVFSGSALAGVVPQYGGGGNHGGGGNNSGPNSE
                     LNIYQYGGGNSALALQTDARNSDLTITQHGGGNGADVGQGSDDSSIDLTQRGFGNSAT
                     LDQWNGKNSEMTVKQFGGGNGAAVGQTASNSSVNVTQVGFGNNATAHQY"
     gene            complement(628..819)
                     /gene="csgB"
                     /locus_tag="OQQ19_004168"
                     /pseudo
     CDS             complement(628..819)
                     /gene="csgB"
                     /locus_tag="OQQ19_004168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309446.1"
                     /note="CsgB; functions as a nucleator in the assembly of
                     curli (coiled surface structures) on the cell surface;
                     incomplete; partial in the middle of a contig; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="curlin minor subunit CsgB"
     gene            1598..2248
                     /gene="csgD"
                     /locus_tag="OQQ19_004169"
     CDS             1598..2248
                     /gene="csgD"
                     /locus_tag="OQQ19_004169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator CsgD"
                     /protein_id="HCS1805570.1"
                     /translation="MFNEVHSIHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQ
                     RSLDDISSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWP
                     HINGVFYSMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHRE
                     KEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR"
     gene            2253..>2369
                     /locus_tag="OQQ19_004170"
     CDS             2253..>2369
                     /locus_tag="OQQ19_004170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309443.1"
                     /note="chaperone-like protein that participates in the
                     polymerization of curlin (CsgA) subunits into curli
                     (extracellular fibers from Escherichia and Salmonella spp.
                     that are involved in the colonization of inert surfaces
                     and biofilm formation); part of the curli secretion and
                     assembly protein complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curli assembly protein CsgE"
                     /protein_id="HCS1805571.1"
                     /translation="MKRYLRWIVAAEFLFAAGNLHAVEVEVPGLLTDHTVSSI"
BASE COUNT          676 a          513 c          476 g          704 t
ORIGIN      
        1 acacatcccc ttgctgggtc gtattaaagg ttatctgact ggaaagtgcc gcaaggagta
       61 ataacgcatt catattcttc tcccgaaaaa aaacagggct tgcgccctgt ttctgtaata
      121 caaatgatgt attagtactg atgagcggtc gcgttgttac caaagccaac ctgagtcacg
      181 ttgacggagg agttagatgc agtctggcca actgcagcac cgttgccacc accgaactgt
      241 ttaaccgtca tttcagaatt tttgccgttc cactgatcaa gagtagcgct attaccgaag
      301 ccacgttggg tcagatcgat tgagctgtca tctgagccct gaccaacatc tgcaccatta
      361 ccgccgccat gctgggtaat agtcaagtca gagttacggg catcagtttg cagagcaagt
      421 gcagagttac cgccaccgta ctggtaaatg ttcagctcag aatttgggcc gctattatta
      481 ccgccaccac cgtggttacc gccgccgccg tactgaggaa caacacctgc cagagcgcta
      541 ccggagaata cgattgctgc aattgctgct acttttaaaa gtttcatgta aaacccccat
      601 cggattgatt taaaagtcga atggaaatta acgttgtgtc acgcgaatag ccatttgcga
      661 ctgtctctgc actacaattg ccgttttttg agtaccatac tgtgtaatat ttgctttatt
      721 accagaacct ttctggataa tcatcgcagt attaccataa gcaccttgcg aaatactggc
      781 atcgttggca ctgcccgcct gatcaatata tgcaaggtta ttagactggc cccctgaatc
      841 tccagacaac cagtatcact taaataagtg atactggttg tctggagatt cagggggcca
      901 gtctacgcaa cctgtatttt gttaacgctg cgttatgatg gaaagtatgt ctgcggaaat
      961 atttttaata actcacccgc gcgttgtatt tttctttttt tgttcatacc aaagtattaa
     1021 aacccacgta aatacgctgt tatctacgca aaaaatattt tgttttcttt taaatctccg
     1081 ttttccgcta tcaaaaatca ccagacagtc atttttcttg cccgtcgctg attgctgcga
     1141 tatgtcttgc gcacaagccg tgacaaacct cgtctttttg gagtaaaaat ttgtccacgg
     1201 aggtgcggag aaaaaacaag aacgttttac atgacgaaag gactacaccg aaatattttt
     1261 tatatgtatt attagtaagt tatcaccatt tgtatgattt tttaaaattg tgcaataaaa
     1321 accaaatgta caacttttct atcatttcta aacttaataa aaccttaagg ttaatatttt
     1381 agtataacaa gttacattta gttacatgtt taacgcttga tttaagtttt gtaatggcta
     1441 gattgaaatc agatgtaatc cattagtttt atattttacc catttagggc tgatttatta
     1501 ctacacacag cagtgcaaca tctgtcagta cttctggtgc ttctatttta gaggcagctg
     1561 tcaggtgtgc gatcaataaa aaaagcgggg tttcatcatg tttaatgaag tccatagtat
     1621 tcatggtcat acattattgt tgatcactaa accttctttg caggcgacag ctctcttgca
     1681 gcaccttaaa caatcgctgg caattacagg aaaattacat aatattcaac gttctctgga
     1741 cgatatctct tcaggctcta ttattcttct ggatatgatg gaagcagata aaaagcttat
     1801 ccattattgg caggatactt tgagcaggaa aaacaacaat atcaaaatat tgttgctaaa
     1861 tacgcctgaa gattacccgt accgcgacat tgaaaactgg cctcatatca acggcgtttt
     1921 ttattccatg gaggatcaag aacgtgttgt caatgggttg caaggcgtcc tgcgcggcga
     1981 atgctacttt acgcaaaagc ttgccagcta cttgattacg cattcaggta actatcgtta
     2041 taacagcacg gaatcagccc tccttactca tcgggaaaaa gagatcctga ataagctgcg
     2101 tatcggcgcg tctaataacg agatcgctcg ttcgttgttc atcagcgaaa atacggttaa
     2161 aacgcatctt tataatcttt tcaagaagat agccgtaaaa aaccggacac aagcggtttc
     2221 ctgggcaaac gataacctca ggcgataaag ccatgaaacg ttatttacgc tggattgtgg
     2281 cggcagaatt tctgttcgcc gcagggaatc ttcacgccgt tgaggtagaa gtcccgggat
     2341 tgctaactga ccatactgtt tcatctatt
//
LOCUS       DAJVSY010000283         2317 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.285, whole genome shotgun sequence.
ACCESSION   DAJVSY010000283 DAJVSY010000000
VERSION     DAJVSY010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2317
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.285"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            520..663
                     /locus_tag="OQQ19_004171"
                     /pseudo
     CDS             520..663
                     /locus_tag="OQQ19_004171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558263.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            810..1078
                     /locus_tag="OQQ19_004172"
                     /pseudo
     CDS             810..1078
                     /locus_tag="OQQ19_004172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001449236.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1469..>2317
                     /locus_tag="OQQ19_004173"
     CDS             1469..>2317
                     /locus_tag="OQQ19_004173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858398.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HCS1805572.1"
                     /translation="MIKSTNIQAIGSGIMHQINNIYSLTPFPLPMELTPSCNEFYLKA
                     WSEWEKNGTPGEQRNIAFNRLKICLQNQEAELNLSELDLKTLPDLPPQITTLEIRKNL
                     LTHLPDLPPMLKVIHAQFNQLESLPALPETLEELNAGDNKIKELPLLPENLTHLRVHN
                     NRLHILPLLPPELKLLVVSGNRLDSIPPFPDKLEGLAMANNFIEQLPELPFSMNRAVL
                     MNNNLTTLPESVLRLAQNAFVNVAGNPLSGHTMRTLQQITTGPDYSGPRIFFSMGNSA
                     TISAPEH"
BASE COUNT          769 a          499 c          397 g          652 t
ORIGIN      
        1 caggaaggag tgtccgttaa actcaggcta cctcaactct cgtctgggga atatctcccc
       61 ggcagccttc aggataaaat attatcagat gactgcttag aaaaagaaca aatggtggtg
      121 tccgctattg ccagtacacc tcaagcttct taccatattt gaaataaagc tcaatagcgc
      181 aaattttttg ttcttcagta aacatgtttc atcttctgag agtccaggaa atcgtccgca
      241 tccccattac cgtcttatat cactggcgct gacatgtgct cattgatgaa gtgaatctga
      301 atgacatgtt ttgccatatc aacgccaacc ggtgtatatt tcatttgtgg agtctccagt
      361 ctgaggacgc tttatgcatc ccgtattggg cagtatgatg ccggaaagct gcgaggctcc
      421 acacctgcca gtttcaccct tttaaccatc atactactcc gtgtttaatt gtgtgggatg
      481 cgttcattac attttaacag tgtcaccccg tcggccacga aagataaaca ggtgaccaga
      541 aaagggatct tcatccagca catgctatat cttgaacgta acaacctgac cctccgcacc
      601 cgcatcaagc ggctggcacg taaaacaatc tgcttctcgc gttccgtgga aatccacgaa
      661 aagtcatcgg ctccttcatt gaaaaacaca tattctactg attggaagcg ccacccgaaa
      721 aagtatcgtt tttttacagt aaacttcatt tagccgacta taatgtaaaa aaataaattt
      781 tttaccgaaa tataacataa ggaagtaata tgcttacaca aactatattc ccttgtcttc
      841 ccaaaaaaca agaaaatatc atccctgaag tatcaaatac tatattagta tcttctactg
      901 ttactacaga tggatgtact gtttttaata aacaaaaaca gccatatacg aattgcaaat
      961 acctgctacc aaccgaacga aaaagttgaa attcacagct acagaaatac aatggttgac
     1021 aaagataaat gaagccggaa ttaatgaaaa acaaagccaa cggtattctg atttctgaag
     1081 ttaatttcag actcgtttaa gctccatttt caaaaaaaat atatcagggt ttgttactaa
     1141 taacttctga aaacagaaaa aaatagagca gtaattctat ttcagagagg agtaactcca
     1201 tctatcctcg atacgtactg aacgttatcg tgatatattc atcatgcttt cttcaccatt
     1261 attcgagtac agggagagac gcaatgacct taaatacctt tttatggctg aattaccatt
     1321 ctcaggaata acagcagact ccttcccata gacggcttag ggggaaagca atacccggag
     1381 aaagggtaca aagcaaactg ttttaaaatt aataagctat attctatttc actagaattc
     1441 ttatcgctga taagaaattt tagttataat gattaaatca accaatatac aggcaatcgg
     1501 ttctggtatt atgcatcaaa taaacaatat atactcgtta actccatttc ctttacctat
     1561 ggaactgact ccatcttgta atgaatttta tttaaaagcc tggagtgaat gggaaaagaa
     1621 cggtacccca ggcgagcaac gcaatatcgc cttcaatagg ctgaaaatat gtttacaaaa
     1681 tcaagaggca gaattaaatt tatctgagtt agatttaaaa acattaccag atttaccgcc
     1741 tcagataaca acactggaaa taagaaaaaa cctattaaca catctccctg atttaccacc
     1801 aatgcttaag gtaatacatg ctcaatttaa tcaactggaa agcttacctg ccttacccga
     1861 gacgttagaa gagcttaatg cgggtgataa caagataaaa gaattaccat tgcttcctga
     1921 aaatctaact catttacggg ttcataataa ccgattgcat attctgccac tattgccacc
     1981 ggaactaaaa ttactggtag tttctggaaa cagattagac agcattcccc cctttccaga
     2041 taagcttgaa gggctggcta tggctaataa ttttatagaa caactaccgg aattaccttt
     2101 tagtatgaac agggctgtgc taatgaataa taatctgaca acacttccgg aaagtgtcct
     2161 gagattagct cagaatgcct tcgtaaatgt tgcaggtaat ccactgtctg gccataccat
     2221 gcgtacacta caacaaataa ccaccggacc agattattct ggtcctcgaa tatttttctc
     2281 tatgggaaat tctgccacaa tttccgctcc agaacac
//
LOCUS       DAJVSY010000284         2282 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.286, whole genome shotgun sequence.
ACCESSION   DAJVSY010000284 DAJVSY010000000
VERSION     DAJVSY010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2282
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.286"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..184
                     /locus_tag="OQQ19_004174"
     CDS             <1..184
                     /locus_tag="OQQ19_004174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001395480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HCS1805573.1"
                     /translation="IYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFM
                     ETVSPFPGGKHGLAKV"
     gene            complement(204..455)
                     /locus_tag="OQQ19_004175"
     CDS             complement(204..455)
                     /locus_tag="OQQ19_004175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805574.1"
                     /translation="MPGTTTAMSINFIGITARTMNSNGSHGKPQIPVDYQKLLSIEDI
                     TFCRNRWGNIGENALRRVAVGKKLSFFGSDRGGENAAII"
     gene            378..1068
                     /locus_tag="OQQ19_004176"
                     /pseudo
     CDS             378..1068
                     /locus_tag="OQQ19_004176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(1085..1264)
                     /locus_tag="OQQ19_004177"
                     /pseudo
     CDS             complement(1085..1264)
                     /locus_tag="OQQ19_004177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611684.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            1594..>2282
                     /gene="ipaH7.8"
                     /locus_tag="OQQ19_004178"
     CDS             1594..>2282
                     /gene="ipaH7.8"
                     /locus_tag="OQQ19_004178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH7.8"
                     /protein_id="HCS1805575.1"
                     /translation="MFSVNNTHSSVSCSPSINSNSTSNEHYLRILTEWEKNSSPGEER
                     GIAFNRLSQCFQNQEAVLNLSDLNLTSLPELPKHISALIVENNKLTSLPKLPAFLKEL
                     NADNNRLSVIPELPESLTTLSVRSNQLENLPVLPNHLTSLFVENNRLYNLPALPEKLK
                     FLHVYYNRLTTLPDLPDKLEILCAQRNNLVTFPQFSDRNNIRQKEYYFHFNQITTLPE
                     SFSQLDSSYRI"
BASE COUNT          676 a          514 c          429 g          663 t
ORIGIN      
        1 catttatcag ccggtttact cgccatgggt gaatcatgtt gaacggctat ggcaggcact
       61 tcacgacaca ataacgcgta atcatcagtg ccgctcaatg tggcaactgt tgaaaaaagt
      121 tcgccatttt atggaaaccg tcagcccatt ccccggaggc aaacatgggc tggcaaaagt
      181 gtagcggtat taagcgcagc tatttagatt attgccgcat tttctccacc acgatcagag
      241 ccgaaaaaag ataatttttt tccaactgcc acccggcgta atgcgttttc accaatgtta
      301 ccccacctat tgcggcaaaa ggtaatgtct tcaatcgata gaagtttctg gtaatctact
      361 ggtatttgag gttttccatg actaccgtta ctgttcattg tccgcgctgt aattccgatg
      421 aagtttatcg acatggccgt agttgttccc ggcatgagcg tttccgttgt cgctcatgta
      481 aacgtgtttt ccagctcact tactcttatg aagccagaaa actcggcgtt aaggagcaga
      541 tcgttgaaat ggcacataac ggcgcagggg gctgttatac cgccagaaca ctgaaaatcg
      601 gcatcaatac cgtcatacgg acattaaaaa gctctcgccc cggcggataa catctgcgcc
      661 agtcgctcac gctgatgttg cccttatctg tgaacttgat gagcagtggc gcttcgttgg
      721 cagcaaggcg caacaacact ggccctggta tgcgtacaac actaaaactg gcggtgtgtt
      781 ggcttacact tgcgggccac ggaatgatga gacctgtcgg gaactgttag ccctgttgac
      841 tccgttctgt atcggcatgg tgaccagcga tgactggggc agctacgcca gagaagtgcc
      901 ggaggagaaa cacctgaccg gcaaaatctt cacgcaacgt atgaacgtaa caacctgacc
      961 ctccgccccc gcatcaagcg gctggcacgt aaaacaatct gcttctcgcg ttccgtggaa
     1021 atccacgaaa aagtcatcgg ttccttcatt gaaaagcaca tattctaatg attggaagta
     1081 ctacccggca aaactcattc agtgcattcc agtgattcag gatatagttg aacgccttta
     1141 ccatttcagc atggtttgac aaagttttcc tctggagctt tatccagtca tacaaggact
     1201 tcattcgcgg cacacatttc tcctgcctta ccgcaagccg tttttctgcc ggcctccctc
     1261 gtattaaatg tgtatcgttt ttttacagta attttaattt atcattctat aataggaata
     1321 aatgagcttg gctaaaatat gatataaaac aaatatactt actcggatta catttccttg
     1381 ctcactggaa tgttgaattc agtgttatta ttgactgcag tcacaataaa aaaaagaatt
     1441 ccatagaaaa cctcaacaaa taaattacaa ctaacttctg ttatgtgtaa aatggaaact
     1501 attaaaactt aatatcgaaa atggtaagtg aaatttgtat aaatatacaa ttttaaatat
     1561 ttattctcac aaatataagg ttgccctagc attatgttct ctgtaaataa tacacactca
     1621 tcagtttctt gctccccctc tattaactca aactcaacca gtaatgaaca ttatctgaga
     1681 atcctgactg aatgggaaaa gaactcttct cccggggaag agcgaggcat tgcttttaac
     1741 agactctccc agtgctttca gaatcaagaa gcagtattaa atttatcaga cctaaatttg
     1801 acgtctcttc ccgaattacc aaagcatatt tctgctttga ttgtagaaaa taataaatta
     1861 acatcattgc caaagctgcc tgcatttctc aaagaactta atgctgataa taacaggctt
     1921 tctgtgatac cagaacttcc tgagtcatta acaactttaa gtgttcgttc taatcaactg
     1981 gaaaaccttc ctgttttgcc aaaccattta acatcattat ttgttgaaaa taacaggcta
     2041 tataatttac cggctcttcc cgaaaaattg aaatttttac atgtttatta taacaggctg
     2101 acaacattac ccgacttacc ggataaactg gaaattctct gtgctcagcg caataatctg
     2161 gttacttttc ctcaattttc tgatagaaac aatatcagac aaaaggaata ttattttcat
     2221 tttaatcaga taaccactct tccggagagt ttttcacaat tagattcaag ttacaggatt
     2281 aa
//
LOCUS       DAJVSY010000285         2276 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.287, whole genome shotgun sequence.
ACCESSION   DAJVSY010000285 DAJVSY010000000
VERSION     DAJVSY010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2276
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.287"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..350)
                     /locus_tag="OQQ19_004179"
     CDS             complement(<1..350)
                     /locus_tag="OQQ19_004179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPC domain-containing protein"
                     /protein_id="HCS1805576.1"
                     /translation="MKIKSISKAVLLFALLTSTSFAAGKNVNVEFRKGHSSAQYSGEI
                     KGYDYDTYTFYAKKGQKVHVSISNEGADTYLFGPGIDDSVDLSRYSPELDSHGQYSLP
                     ASGKYELRVLQTRN"
     gene            592..885
                     /locus_tag="OQQ19_004180"
     CDS             592..885
                     /locus_tag="OQQ19_004180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309701.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgL domain-containing protein"
                     /protein_id="HCS1805577.1"
                     /translation="MFCVIYRSSKRDQTYLYVEKKDDFSRVPEELMKGFGQPQLAMIL
                     PLDGRKKLVNADIEKVKLALTEQGYYLQLPPPPEDLLKQHLSVMGQKTDDTNK"
     gene            957..1616
                     /locus_tag="OQQ19_004181"
     CDS             957..1616
                     /locus_tag="OQQ19_004181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HCS1805578.1"
                     /translation="MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLF
                     IKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDL
                     TLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLGLSVNGEQRQQG
                     TTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRV
                     L"
     gene            1708..2154
                     /locus_tag="OQQ19_004182"
     CDS             1708..2154
                     /locus_tag="OQQ19_004182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309703.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgN family cysteine cluster protein"
                     /protein_id="HCS1805579.1"
                     /translation="MNDVPFWQSKTLDEMSDAEWESLCDGCGQCCLHKLMDEDTDEIY
                     FTNVACRQLNIKTCQCRNYERRFEFEPDCIKLTRENLPTFEWLPMTCAYRLLAEGKDL
                     PVWHPLLTGSKAAMHGERISVRHIAVKESEVIDWQDHILNKPDWAQ"
BASE COUNT          592 a          491 c          587 g          606 t
ORIGIN      
        1 tcgtttcggg tttgcagcac tcgcagctca tatttgccag aagcagggag tgagtattgt
       61 ccgtgactat cgagttctgg ggaatatctg gataaatcaa cagaatcatc gattcctggc
      121 ccgaagaggt aagtatcagc gccttcatta gagatactca catgtacttt ctgacctttt
      181 ttggcataga aggtatatgt atcgtaatcg tatcccttta tttcgccgga gtactgagcg
      241 ctgctatggc cttttctgaa ctcaacattg acattcttac ccgcagcaaa gctcgtggag
      301 gttagcagtg caaacagcaa tacagcctta ctgatgctct tgattttcat tggtagtctc
      361 ctgttcagaa tgagtacgat gaactgttat aatataacaa tccctaacgg gagaattcca
      421 gtggcttttc tgcgttcggt aaaatcccgg cgcggcattt tttgccgggg ggattactta
      481 taaaggggca tggactcaac aaaccgcaga aatctacagc tggctggctt gtggcgcggg
      541 tttcattgat gttagcttat gccaaaacct ggcatcttaa agagtaaaag tatgttttgt
      601 gtgatttatc gaagcagcaa gcgtgaccag acctatttat atgtcgaaaa aaaagacgat
      661 ttttcgcgtg ttcctgagga actgatgaaa ggttttggtc agcctcagtt agcgatgatt
      721 ctgccgttgg atgggcggaa gaaactggtc aatgctgata ttgaaaaggt taaactggca
      781 ttaaccgagc aaggttacta tttgcagtta ccgccaccac ccgaagattt gctgaagcaa
      841 catctttccg tcatggggca gaaaacagac gacacgaaca aataaccgat atccggcggt
      901 ggcattatct ttgtcggcgc gggttttcat atccacgata aggtgagggg aacgttatgt
      961 atcaacatca caactggcaa ggtgcgctgc tggattatcc ggtgagtaaa gtagtctgtg
     1021 ttggcagtaa ctatgccaaa catattaaag agatgggcag cgcagtgccc gaagagccag
     1081 tgctgtttat taaaccagaa acggcactgt gcgatctgcg gcagccattg gcgatcccat
     1141 ccgatttcgg ttcagttcat catgaagtcg aactggcggt gttgattggt gcgacgctgc
     1201 gtcaggcaac ggaagagcat gtccgcaaag ccattgccgg ttacggcgtg gcgcttgatc
     1261 tgacattgcg tgatgttcag ggaaaaatga agaaagccgg gcagccgtgg gaaaaggcta
     1321 aagcgtttga taactcttgt ccgctttccg ggtttatccc cgcggcggaa tttaccggcg
     1381 atccacaaaa tacaacgctg ggcctgagcg taaacggcga acaacgccag caaggtacga
     1441 ctgcggacat gatccataaa atcgttccgt tgatcgctta tatgagcaag ttttttaccc
     1501 tcaaggccgg tgacgttgtg ttgacaggca cgcctgatgg cgtcggcccg ttgcaaagcg
     1561 gtgatgagct gacagtcact ttcgatgggc attctttgac aactcgcgtt ttgtaatact
     1621 ttttgccgcc tgaaagcggc ggcaaaactt gcatcgctgt gccagactgg ttataaggtg
     1681 cgttttaacg taatggcgga acacctgatg aacgatgtac ctttctggca aagtaaaacc
     1741 ctggacgaaa tgagcgatgc ggaatgggag tcgttgtgtg atggttgcgg tcagtgttgc
     1801 ctgcataaac tgatggatga agacaccgac gaaatctact tcactaacgt cgcctgtcgc
     1861 cagctcaata ttaaaacctg tcaatgtcgg aactacgaac gtcgtttcga gtttgaaccc
     1921 gactgcatta aattaacccg tgaaaatctg ccaacattcg aatggctgcc aatgacctgc
     1981 gcttatcgtt tgctggcgga aggtaaagat ttacctgtgt ggcatccgct acttactggt
     2041 tcgaaagcgg caatgcatgg tgaacgtatc tctgtgcgtc atatcgcagt gaaagaatca
     2101 gaagtgattg actggcagga tcatatctta aataaacctg actgggcgca gtgataaatt
     2161 taatagatgt tgatgggggc tttcttaata tacgtctgga tgctcgccat ttcgtagccc
     2221 tgtttttgaa agcgctctgt cataatgaga gttacccgat accttattat caacag
//
LOCUS       DAJVSY010000286         2263 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.288, whole genome shotgun sequence.
ACCESSION   DAJVSY010000286 DAJVSY010000000
VERSION     DAJVSY010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2263)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.288"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            111..432
                     /locus_tag="OQQ19_004183"
                     /pseudo
     CDS             111..432
                     /locus_tag="OQQ19_004183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001232281.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(466..672)
                     /locus_tag="OQQ19_004184"
     CDS             complement(466..672)
                     /locus_tag="OQQ19_004184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001570270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805580.1"
                     /translation="MTVSYKITYEHRDGDQIRMEEVLFHSEHEPTKDEIHDAVRKDTV
                     RFNSPSNGVTAVSGFKVISVVPVP"
     gene            complement(1170..1243)
                     /locus_tag="OQQ19_004185"
     tRNA            complement(1170..1243)
                     /locus_tag="OQQ19_004185"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1209..1211),aa:Gly,seq:ccc)
     gene            complement(1322..2077)
                     /locus_tag="OQQ19_004186"
     CDS             complement(1322..2077)
                     /locus_tag="OQQ19_004186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311765.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HCS1805581.1"
                     /translation="MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTV
                     KRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSSTRKSTAKSTT
                     KTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYA
                     AGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKTGQKIATMGST
                     DAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC"
BASE COUNT          603 a          533 c          491 g          636 t
ORIGIN      
        1 tcatacacta aatcagtaag ttggcagcat taccaatttt gctaagttaa tgcattaatc
       61 taaaaacgct ttaaatcaat acataaccat tatctcttgg gattatttac atgcgcaaaa
      121 gtttaatgct gttacttgct tcaacattga ttatttctgg atgtgcaaca aaaaaacaac
      181 tcgttccaac tggtggaagc aaatcagacg gcacagttag gatgagttat tcttacggta
      241 tgtttgaaag tcctgttgta gatccacaac aaggcatgaa tgcagccaaa gcgcgttgtg
      301 ccgcttaggg gatattcagg agccgagcct tttggtggat tcacttctca atgttcacaa
      361 ccttcttcat ctggttgtat gcaaacactt gtgactatcg aatatcaatg cactggcgat
      421 attaagaagt aataattagg ggcttccagc cccttctata accattcatg gaacagggac
      481 aaccgaaatc actttaaacc ctgaaacagc cgttactcca ttagatggag aattaaatct
      541 cacagtatct tttcttactg catcatgaat ttcatctttt gttggttcat gctctgaatg
      601 gaataaaacc tcttccattc taatttgatc accgtctcta tgctcataag taatcttgta
      661 gctaacagtc atatcaacct catgcagggg aattgtgaga ttattataga caatagaaac
      721 cataaagccc cgttggtgat acagcaacaa gcgggagcgt agcgacttca tcagattgtc
      781 agaaagatca caccttatca ggataaccgt gtacccgttg ggagcgtggc tgaaacgctg
      841 atagagcttg catatggttt gcaaggacca atatcaccat aaacctgttt acgcagccac
      901 aaggccgcac atcgggctta aatgcgtgtg ttcagtctgt cgatgacatt acaatgccag
      961 gatgggcttt atcttcacgt tgtgctatcg cggtgtgaga ggtgcaactg ccgccaacgt
     1021 taggttatac tgtcatctca ccgtgtaact taacgtgaca gttactaagg gcggatcaca
     1081 atggtagaac tcctaagcaa attaaatagg taactgttta agttgctgac agagaagact
     1141 tttttagtct tctccacctg gggagattct ggagcgggcg aagggaatcg aaccctcgta
     1201 tagagcttgg gaagctctcg ttctaccatt gaactacgcc cgcttcgaga tgcgtaaggc
     1261 attataaacc ttacgctctc cttagcaagt gccgcgctgc tgactgctga ttaattcgcc
     1321 atcagcattt tggcttgctg ccctgcggcg gcaagtaacg tagcggatca attgccgttg
     1381 cacggtaacg aatctggaaa tgcaggcgaa cagatgccgc atccgtgctc cccatagtgg
     1441 cgattttttg cccagtcttc acgctttgcc cattatttac cagcatcgtg tcattatggg
     1501 cgtaagccgt aatgtaatct tcactgtgtt taatcatgat gagattaccg tagccacgca
     1561 gctggttgcc cacatacacc acctttcctg cacccgcggc gtaaataggt gtaccccgtg
     1621 gagctgagat atcaatccct ttattgccgc catctgctgt cgaatacggc atgataactt
     1681 tccctgtcgt tggccataac caacaacgtt gccctactgg cggccaggaa gatttcggta
     1741 ccgctgatga cggtgtaacc gatgcggttt tggtcgttga tttggcggtt gatttacgtg
     1801 tactactgct acttttcgcc ccacccagtt ttagtttctg accaacttca atggtgtaag
     1861 ggggggaaat gccgttcagt cgcgccagtt cttttacgct ggttcccgtg gtgcgcgaaa
     1921 tacgatatag cgtatccccc cgtttcacgg tgtaaacgga gccggaatat gttcctgtat
     1981 cggatgattt gctacccgaa cagcccgcca aaagcagtcc aaccgataac aacatcacga
     2041 tacccagaga ttttttattc aggcgtcccg cactcaaaat ctttcctcgc ttaaaaaaca
     2101 agacgcctta tcatagcagc cagcctcttg atacccaatc tcttgcttct ggaaaaacgt
     2161 ggtaatagag aaagaggtta atttcatttg gcaaagggaa gtatcatcag caaaatattc
     2221 gctgtagagg tatcgaactt cctgactttt taccctattt ccc
//
LOCUS       DAJVSY010000287         2232 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.289, whole genome shotgun sequence.
ACCESSION   DAJVSY010000287 DAJVSY010000000
VERSION     DAJVSY010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2232)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2232)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.289"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..500)
                     /locus_tag="OQQ19_004187"
     CDS             complement(<1..500)
                     /locus_tag="OQQ19_004187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HCS1805582.1"
                     /translation="MAHIQLIKQTSSGLLLPATPESCDFLHQIKTGEWIHADFKRVRN
                     YAFHKRFFKLLQLGFDYWTPIGGAITPRERELVSGFVEYLCESVGREHTPALSEAAEQ
                     YLNTVATRRTRDTALLKSFEAFREWVTIQAGFYTEHIYPDGSRGRRAKSISFANMDET
                     EFQQVY"
     gene            complement(539..826)
                     /locus_tag="OQQ19_004188"
     CDS             complement(539..826)
                     /locus_tag="OQQ19_004188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805583.1"
                     /translation="MKIEELREIFSENGLYAVRVENGAIVSHCRIRCLQSQQRKSGAV
                     LFYFCNGLLTDGFILREDEFVTSLRVLKEIGFKAGFLLLLKNKLIYNLEQD"
     gene            complement(1076..1231)
                     /gene="hokD"
                     /locus_tag="OQQ19_004189"
     CDS             complement(1076..1231)
                     /gene="hokD"
                     /locus_tag="OQQ19_004189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokD"
                     /protein_id="HCS1805584.1"
                     /translation="MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVF
                     VDYESRK"
     gene            complement(1473..2138)
                     /locus_tag="OQQ19_004190"
     CDS             complement(1473..2138)
                     /locus_tag="OQQ19_004190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HCS1805585.1"
                     /translation="MTVADFKRPKLELPNGANKLLLHSCCAPCSGEVMEALQASGIDY
                     TIFFYNPNIHPQKEYLIRKDENIRFAEQHGVPFIDADYDTDNWFERAKGMEWEPERGI
                     RCTMCFDMRFERTALYAAENGFSVISSSLGISRWKNMQQVNDCGRRAVAHYPGMVYWD
                     YNWRKQGGSSRMIEISKREKFYQQEYCGCVYSLRDTNLHRKSQGRPLIKIGQLHYGKE
                     EKE"
BASE COUNT          563 a          579 c          507 g          583 t
ORIGIN      
        1 ttataaacct gctgaaactc ggtttcgtcc atattcgcaa acgagatgga tttcgccctg
       61 cgcccacggc taccgtccgg ataaatatgc tcggtgtaaa atccggcctg aatggttacc
      121 cactcgcgga aagcctcaaa cgactttagc aatgctgtat ctcgggttct gcgtgtcgca
      181 actgtattca gatattgctc tgcggcttcg ctcagagctg gcgtatgttc ccggcctact
      241 gattcgcaca ggtactcaac gaagcctgat accagttctc gttcgcgagg cgtaatcgcc
      301 ccaccgatcg gagtccagta atcgaatccc agttgcagga gtttgaaaaa acgcttgtgg
      361 aatgcgtagt tacgcacacg cttaaagtct gcgtgtatcc actcacctgt tttgatttga
      421 tgcagaaaat cgcaactctc cggcgtcgcc gggagaagta atccggaaga ggtttgtttg
      481 atcagttgta tatgcgccat cggctttctc cggtggcacg gtgttacaca gcaggagttc
      541 aatcctgctc aagattgtag atgagtttat tcttcagcaa aagcagaaaa ccagccttaa
      601 aaccaatctc tttcaaaacc cgtaatgatg tgacaaattc gtcctcacgc aaaataaaac
      661 cgtccgtcag aagtccatta caaaaataaa ataacacagc accgctcttc ctttgttgag
      721 attgcaaaca tctaatgcgg caatggctga caatcgctcc attctcaacg cgcacagcat
      781 agaggccatt ttcactaaaa atttcacgca attcttcgat tttcatcttc agaatccttc
      841 cagataaata gctctcccct gttcggggtc catccctctt ctccctgcgc gctacttaag
      901 tgagtcgatt ctatctgcga aggtgcgcga atcaaattca ccggaaataa acaacaaaaa
      961 acccgccgaa acgctgagag atcacagcga tgggcgggtt aagtgcgggt gcgttgagga
     1021 tgcctgacac atcagaggtg ggcggggatg ggatcagctc cccgcccggt cactcttact
     1081 tcctggattc gtagtctacg aagacagcga cctccgtctg gccggttcgg attcgtacct
     1141 cacagaggtc tttcctcgtt accagtgccg tcactatgac ggttaaacag atgacgatca
     1201 gggcgattaa catcgccttt tgctgcttca tagcctgctt ctccttgcct ttcggcatgt
     1261 aagaggctaa cctacatgtg caaagcatga aattggcctc agattaatgt taagcgtctt
     1321 gccggacgcg taatgttaac tggggctttt ctctatctgc cttttggtgt tcatgcctga
     1381 agcagatagc ctgaagcaga tagcctcaag cacccgcagt cattctactt acctcgccaa
     1441 tatgaaatca atcagaaagg tgccccataa aatcactcct tctcttcttt accgtagtgg
     1501 agttgaccaa ttttgataag agggcgtccc tgagatttgc ggtgtagatt ggtatcgcgc
     1561 agagaataca cacagccaca atattcctgc tgatagaatt tttcgcgctt gctgatttca
     1621 atcatacggg acgagcctcc ctgcttgcgc cagttataat cccagtacac catgcccgga
     1681 taatgcgcga cggctcgccg cccacagtcg ttaacctgct gcatattttt ccagcgtgaa
     1741 atgcccagtg aactgctgat cacactgaaa ccattttcag cggcgtacag cgctgtccgc
     1801 tcaaaacgca tgtcaaaaca catggtgcaa cggatccctc gttcgggctc ccattccatt
     1861 cctttggctc gttcaaacca gttgtctgtg tcgtaatcag catcaataaa cggcacgccg
     1921 tgttgttcag caaagcgaat attctcatcc ttacgaatta aatactcttt ctgaggatga
     1981 atgttcgggt tgtagaaaaa gatggtgtag tcgattcccg aggcctgaag cgcctccatc
     2041 acctcaccgg aacatggagc acagcaagag tgcagtagta gtttgtttgc cccgtttggg
     2101 agctccaatt tgggccgttt gaaatcagca actgtcataa atatgtttat tggggtcata
     2161 aaaatatcaa agagtgtagc attagaacgg ggctatcgga aacagatgtg tgactgctcc
     2221 ccgccctttc gg
//
LOCUS       DAJVSY010000288         2207 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.290, whole genome shotgun sequence.
ACCESSION   DAJVSY010000288 DAJVSY010000000
VERSION     DAJVSY010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.290"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(117..1571)
                     /gene="ospC2"
                     /locus_tag="OQQ19_004191"
     CDS             complement(117..1571)
                     /gene="ospC2"
                     /locus_tag="OQQ19_004191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC2"
                     /protein_id="HCS1805586.1"
                     /translation="MKIPEAVNHINVQNNIDLVDGKINPNKDTKALQKNISCVTNSSS
                     SGISEKHLDHCADTVKSFLRKSIAAQSYSKMFSQGTSFKSLNLSIEAPSGARSSFRSL
                     EHLDKVSRHYLSEIIQKTHPLSSDERHLLSIIINSDFNFRHQSNANLSNNTLNIKSFD
                     KIKSENIQTYKNTFSEDIEEIANHDFVFFGVEISNHQETLPLNKTHHTVDFGANAYII
                     DHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDNFKEVVDEVSRYVHGNQGKTDVPIF
                     NTKDMRLGIGLHLIDFIRKSKDQRFREFCYNKNIDPVSLDRIINFVFQLEYHIPRMLS
                     TDNFKKIRLRDISLEDAIKASNYEEINNKVTDKKMAHQALAYSLGNAKSDMALYLLSK
                     FNFTKQDIAEMEKMNNNMYCELYDVEYLLSEDSANYKVLEYFINNGLVDVNKRFQKAN
                     SGDTMLDNAMKSKDSKTIDFLLRNGAVSGKRFGR"
     gene            1996..>2207
                     /locus_tag="OQQ19_004192"
     CDS             1996..>2207
                     /locus_tag="OQQ19_004192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1805587.1"
                     /translation="MARYDLPDEAWTIIKPLLPPEPTTPRAGRPWAEHRKIINGMFWV
                     LCSGAPWRDLPERYGAWKTVYNRFNR"
BASE COUNT          685 a          405 c          366 g          751 t
ORIGIN      
        1 cgttcaccac atgcaatgtg ttgttgcagg ggaacggtct gcaccatccc ctatatcgat
       61 caatataaca aaaatgacaa cgtcagattc agggcacaac ctaaatatat tttaggtcac
      121 ctcccaaatc gtttgcctga taccgctcca tttcttaata aaaaatcaat tgtttttgaa
      181 tctttgcttt tcattgcatt gtcaagcata gtgtccccac tatttgcttt ttgaaatctt
      241 ttgtttacat caaccaatcc attattaata aaatattcta gcactttata gttggcacta
      301 tcttcactaa gtaaatactc aacatcatac agctcacaat acatattgtt gttcattttc
      361 tccatctctg cgatatcttg ttttgtaaaa ttaaatttag atagtaaata aagtgccata
      421 tcagattttg cattgcctag agaataagca agagcttgat gagccatttt tttatcagtc
      481 accttattgt taatttcttc ataattggat gctttaatgg catcctccaa agatatatct
      541 ctgagtctta tctttttgaa gttatctgtg cttagcattc ttggtatatg atactcaagc
      601 tgaaacacaa agtttataat tctatccaga ctaacaggat caatgttttt attataacaa
      661 aactctcgga atctttgatc tttactcttt cttataaaat caataagatg caacccaatt
      721 ccaagcctca tatctttagt attaaatatt ggcacatcag tttttccctg attaccatgc
      781 acatacctgc taacttcatc cacaacctct ttaaagttat ctaagaaaaa tgattggtgc
      841 tcatggtaaa aaacaggtgg aatagcatta tcaaagtggt cggttaatgt catatatcca
      901 tatggagagt catgatcaat gatatacgca ttagcaccaa aatccacagt atgatgtgtt
      961 ttatttagtg ggagtgtttc ttgatgattg gaaatttcaa ccccaaaaaa aacaaaatcg
     1021 tggttagcta tttcttcaat atcctcagag aatgtgtttt tatatgtttg tatattctca
     1081 gacttaattt tatcaaagga cttaatatta agagtattat ttgacaggtt agcgttactt
     1141 tgatgtctga agttaaaatc agaattaata ataatagaga gcaagtgacg ttcatccgaa
     1201 gaaagaggat gagttttttg tattatttca gaaagatagt gtctggacac cttatcgagg
     1261 tgctcaagtg accgaaatga tgaccgtgct ccagatggcg cttcaataga aagatttaat
     1321 gatttgaaac tggtcccttg agagaacatt ttactataac tttgcgctgc tatagacttc
     1381 cttaaaaagc ttttcacagt atcagcacag tgatctaaat gtttttcact tatgccagaa
     1441 gaggatgagt ttgttacgca tgatatgttt ttttgtaatg cttttgtatc tttgttcgga
     1501 tttatttttc catcaacaag atcaatattg ttctgaacat taatatgatt tactgcttca
     1561 ggtattttca taaaacatcc cccattatgt gcgtttttat ctgcagttat ttagaataaa
     1621 attatctaac ttaatatttt cttgtatgta ttataacgaa catattttaa tatgttgtac
     1681 gattttcact ctgaaatccc ctgagtttaa tcacacttcc tttactgaaa ggaattattg
     1741 caacagtatt atttgttttt ggatatatat cttgcgcctt gttatgtagt taatgctcag
     1801 aatatgatag ataaaataga gacgcagaac agggcatgct cataacatga tgataacata
     1861 aaaaattagt aacaataaat gaaagaatca tgggcgctca acaaaaagag agctaaatag
     1921 ctgcgcggaa tagtaggctg tgtcccttaa tcatctgagt tatagtaact gtctgtttac
     1981 acaacatatt gaactatggc tcgctacgac cttcccgatg aggcatggac catcatcaag
     2041 cccctgttac ctcctgaacc caccacacca cgggccggac gcccatgggc tgagcaccgt
     2101 aaaatcatca atggcatgtt ctgggtgtta tgttccggtg caccatggcg cgatttaccc
     2161 gaacgatatg gggcatggaa aactgtttat aaccgcttta accgatg
//
LOCUS       DAJVSY010000289         2194 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.291, whole genome shotgun sequence.
ACCESSION   DAJVSY010000289 DAJVSY010000000
VERSION     DAJVSY010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2194
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.291"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..709)
                     /gene="ipaH9.8"
                     /locus_tag="OQQ19_004193"
     CDS             complement(<1..709)
                     /gene="ipaH9.8"
                     /locus_tag="OQQ19_004193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858359.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH9.8"
                     /protein_id="HCS1805588.1"
                     /translation="MLPINNNFSLPQNSFYNTISGTYADYFSAWDKWEKQALPGEERD
                     EAVSRLKECLINNSDELRLDRLNLSSLPDNLPAQITLLNVSYNQLTNLPELPVTLKKL
                     YSASNKLSELPVLPPALESLQVQHNELENLPALPDSLLTMNISYNEIVSLPSLPQALK
                     NLRATRNFLTELPAFSEGNNPVVREYFFDRNQISHIPESILNLRNECSIHISDNPLSS
                     HALQALQRLTSSPDYHGP"
     gene            complement(971..1066)
                     /locus_tag="OQQ19_004194"
                     /pseudo
     CDS             complement(971..1066)
                     /locus_tag="OQQ19_004194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(1102..1407)
                     /gene="ccdB"
                     /locus_tag="OQQ19_004195"
     CDS             complement(1102..1407)
                     /gene="ccdB"
                     /locus_tag="OQQ19_004195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858358.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system toxin CcdB"
                     /protein_id="HCS1805589.1"
                     /translation="MQFKVYAYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSD
                     KVSRELYPVVHVGDESWRMMTTDMASVPIFVIGEEVADLSHRENDIKNAINLMFWGI"
     gene            complement(1409..1627)
                     /gene="ccdA"
                     /locus_tag="OQQ19_004196"
     CDS             complement(1409..1627)
                     /gene="ccdA"
                     /locus_tag="OQQ19_004196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin CcdA"
                     /protein_id="HCS1805590.1"
                     /translation="MKQRITVTIDSDSYQLLKSANVNISGLVNTAMQKEARRLRAERW
                     QAENQQGMAEIARFIEMNGSFADENRDW"
BASE COUNT          579 a          461 c          518 g          636 t
ORIGIN      
        1 gtgggccgtg gtagtccggc gaagaggtta atctttgcag ggcttgcaga gcatgggatg
       61 ataatgggtt atcactaata tgtattgaac attcattcct cagattaaga atgctttccg
      121 ggatatgact tatctgattt ctatcaaaaa aatactctct gacaacggga ttatttccct
      181 cagaaaatgc tggtagctca gtgaggaaat tacgggtcgc tctgagattt ttaagagcct
      241 gtgggagcga tggtaaggag actatttcgt tatagctgat attcatagtc aataacgaat
      301 cgggtaaagc tggcaggttt tccagctcat tgtgttgtac ctgaagtgac tccagcgcag
      361 gaggtagcac gggcaattct gataatttat tgctggcgga atataatttt tttagcgtaa
      421 caggcagttc aggtaggtta gttaattgat tatatgatac attgagcagc gttatctgag
      481 ctggtaagtt gtcaggtagc gaggacagat ttaaacggtc cagtcgaagt tcatcggaat
      541 tattgataag acattcttta agtcgggaga cagcctcatc acgctcttca ccggggagcg
      601 cttgtttttc ccatttatcc catgctgaaa agtaatcagc atatgtaccg gaaatagtgt
      661 tataaaaaga attttggggc aatgaaaagt tattatttat cggtaacatg atgggcatcc
      721 agttaaagcc ggtggacaaa tggctttgtt aaaagaaata agcaggagtt tttatgaagt
      781 tcattccatg aaatgaactt cagcactttt ttattataat aaggataaac aaaattggct
      841 gtaaaaaaac gatactgttt cagttaaccg tgaatggcct gtttgcaccg tattgttctt
      901 gtttttcggt tagttaaaca tcgtacttca tatttgaacg gtaagcggct cgtcagaacc
      961 gtattgatat ttactgagag gtcagatcaa ctttccaggg caacagatcg cgtacccggt
     1021 ttgccggcca gtcttggata tgctcaatga cgtaacgcag ccattttgtc aacgccacga
     1081 tttttgaccc tagcctgaca tttatattcc ccagaacatc aggttaatgg cgtttttgat
     1141 gtcattttcg cggtggctga gatcagccac ttcttccccg ataacgaaga tcggcacact
     1201 ggccatatca gtggtcatca tgcgccagct ttcatccccg acatgcacca ccgggtaaag
     1261 ctcacgggag actttatctg acagcaggcg ggcactggcc agggggatca ccatccgtcg
     1321 tccgggcgtg tcaataatgt cactctgtac atccacaaac agacgataac gactctctct
     1381 tttataggcg taaaccttaa actgcatttc accagtccct gttctcatcg gcaaaagagc
     1441 cgttcatttc aataaaacgg gcgatctcag ccatcccctg ctgattttca gcctgccagc
     1501 gttccgcacg cagacggcgg gcctcttttt gcatggccgt atttaccagg cctgagatat
     1561 tcacgtttgc ggatttaagt aactgatagc tgtcactgtc tatagtgaca gtaatacgct
     1621 gcttcatgat aagccctcaa aaacatactt atgatatgta tatgagtata tattaatggt
     1681 acaaaccatc aatatccata aaaagtacac cattaattca ctataagttt ttaatacaat
     1741 tttttctgct gcgatttttt tatacgataa ttagcatact tataacaccg taagtaaatt
     1801 acatgaaagc aggcacagcg tgatccgatt tttctgcgta taacgatttt ccggaagtgt
     1861 aatacggttg cgccccgggc cgggcaccct tttctgttgt tgtgtacggg cccacagaga
     1921 atggtaccgg aggcgggctc agaagtactg agtcgggtga tcgcgtcagg ccgcgaagta
     1981 ctgacacggg tattggtgac tggtgatgaa gtactgcccc gggtatgatt tcaggctgat
     2041 tcaggttctg attctctgtc agtccgcgtg gttgctggcc tggctgattt cctgttgtca
     2101 ggcgttcaac aaccgactgc aggttatagc ccggttcacg aaccacggca gcctggcggc
     2161 tgcaaatcgg ggtgtggcag aatatgagct ttca
//
LOCUS       DAJVSY010000290         2164 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.292, whole genome shotgun sequence.
ACCESSION   DAJVSY010000290 DAJVSY010000000
VERSION     DAJVSY010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2164)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2164)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.292"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            120..560
                     /locus_tag="OQQ19_004197"
     CDS             120..560
                     /locus_tag="OQQ19_004197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805591.1"
                     /translation="MIQKINILDSSQSGVKNGADSEAVLAALIEHLELINPSGRLSQN
                     TRSAMLQLREEEWSEFFFWLLNSLECLDYVIINLTPESKKTLMSEHRNNIQVAIDALY
                     RQRRCKSPGDDSETLTRRNDAIFGNHVWQTFAQYFPPGLEKPAV"
     gene            complement(639..2164)
                     /locus_tag="OQQ19_004198"
                     /pseudo
     CDS             complement(639..2164)
                     /locus_tag="OQQ19_004198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415715.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="alpha,alpha-trehalase"
BASE COUNT          499 a          512 c          549 g          604 t
ORIGIN      
        1 atattcgaca cctgctttac gggtgaaaaa aatcaatata gcacttcgat atccgataaa
       61 gtcggttccc ggtaacaaca acagaatcct tttttaatta ttgtttcgtt gtttttggtg
      121 tgattcagaa aataaatatt ttagacagta gccagtcagg cgttaaaaat ggggcggata
      181 gtgaggcggt tttggctgcg cttattgaac atttagaatt gatcaatcct tctggcagat
      241 taagccaaaa tacccgttcg gcaatgcttc agttacgcga agaggaatgg tctgaattct
      301 ttttttggtt gctaaattct ctggagtgtc tggattatgt gattattaat ttaactccag
      361 aaagcaaaaa aacgttgatg agtgaacacc gtaacaatat tcaggtagca atcgatgctt
      421 tatataggca acgtcggtgt aaatcaccgg gggatgatag tgaaacactt acccgtagaa
      481 atgacgctat cttcggcaac cacgtatggc aaacatttgc gcaatacttc ccgccaggac
      541 ttgaaaaacc ggctgtgtag aaaacaccat agctatggtg ttatctgccg acaacgccat
      601 ccggagaagc cgaatgacgt tgtcggagta agcgctggtt aaggtgtggg ttgtgcctct
      661 ttggttgagg gttgcgtcgt tgctgactta acggtcggac gcgtcgccgg aacattgtca
      721 cacggttgct ctttcgggca gatcaaatcc agcattttca gcgtcacgcc attggtccag
      781 ccaaagccat cctgtaatgg atattcgcca cctctttttg cccgtagttt tgtaatcctt
      841 ctgtcgcgac ccactgtaac ggtgcccagc catttggcgc atcccattgt tgcccacttt
      901 tcaccgacgt ggtgttcagg ccgccgggtt gcagcagatg tgttttcgtc gccgtcgcca
      961 ttttgttggc gcgatctttc gctgccgcat tgacgtacag cgggaacagg gcggccgcgg
     1021 ttaactgatt gcgcacttta tgacttttca ggtcgtaatc ggcataccag ccttgttgat
     1081 cgttccacag gtatttttcg attccttttt gacgggcatt cgccagcgtt tcgtactggt
     1141 ttgccatcgc gttatctcct gcagctttgc tggcgcgggc gaggattttt tccattttaa
     1201 acatcaggct gttcagatcg accggtacga tgctggtggt gcgtaaggta tttaactgct
     1261 gcgggttgtc catccagcgc gagctgaaat cccagccaga cgcagcggca gagcgcaggt
     1321 cgcggtaaat ttcagtggca ggtcgattcg gattgctttt ggcggtggca atatcttcca
     1381 cccatgactc tggtcgtggc gtatcgcgat cgtcccagta gcggttgaga agggtaccat
     1441 cctgaagttt gacaacgcgt ttttcctgtt gtccggcttg caggttttca acaccgtcca
     1501 tccagtaagc atattctttt tgcatttgcg gcaggtattg cttcaacgcg gcatcgcctt
     1561 catgctgcgc cagtaactct accatcaggg caaagaaggg cggttgcgag cggcttaaat
     1621 agtaactgcg gttgccgttg ggaatatgac cgtaagtgtc tatttcatga gcaaaattgg
     1681 ccaccatatc cgcgacttta tcccagtgac cgctttcggc aagtcctaac atggtgaagt
     1741 aactgtccca gtaatatacc tcgcgaaaac gtccgcccgg cacgacataa ggttccggca
     1801 gcggtaacag agaatcccat ttttcggtgt tttcggtaga acgcgttaat accggccaaa
     1861 gtccgtcaat atgttcgcgc agtgactgcc cctctggcgg aacatatttc tcgccttctt
     1921 tcggcagggt gaaattgacg ttaacgaaat ggcgcagatc aaatccgctc tggttttgct
     1981 gcatccgata atcagcggat cgctgttcgg cacggcatcg gcaaaggttt tttggtccgg
     2041 aaaaagtttg gcgttttgca catcattaaa cagcggccct aataaaatat caggcggctg
     2101 tggtgttacc ggtgtttctt ctgcctgcac cgatagcgca gcgaaacaca aaaagataca
     2161 ggct
//
LOCUS       DAJVSY010000291         2015 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.293, whole genome shotgun sequence.
ACCESSION   DAJVSY010000291 DAJVSY010000000
VERSION     DAJVSY010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2015)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2015)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2015
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.293"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>2015
                     /gene="rhsB"
                     /locus_tag="OQQ19_004199"
     CDS             <1..>2015
                     /gene="rhsB"
                     /locus_tag="OQQ19_004199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhs element protein RhsB"
                     /protein_id="HCS1805592.1"
                     /translation="EHADGSVTQSQFDAVGRLRTQTDAAGRTTEYSPDVVTGLITRIT
                     TPDGRASAFYYNHHSQLTSATGPDGLEIRREYDEWGRLIQETAPDGDIIRYRYDNPHS
                     DLPCATEDATGSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQMTAVHREEGLSQYR
                     AYDSRGQLIAVKDTQGHETRYEYNAAGDLTAVIAPDGSRNGTQYDAWGKAIRTTQGEL
                     TRSMEYDAAGRVIRLTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGKLIRSE
                     DEGLVTHWHYDEADRLTHRTVNGETAEQWQYDKRGWLTDISHLSEGHRVTVHYRYDEK
                     GRLTGERQTVHHPQPEALLWQHETRHAYNAQGLANRCIPDSLPAVEWLTYGSGWLAGM
                     KLGDTPLVDFTRDRLHRETLRRFGRYELTTAYTPAGQLQSQHLNSLQYDRDYTWNDNG
                     ELIRISSPRQTRSYSYSTTGRLTGVHTTAANLDIRIPYATDPAGNRLPDPELHPDSTL
                     SMWPDNRIARDAHYLYRYDRYGRLTEKTDLIPEGGIRTDDERTHRYHYDSQHRLVHYT
                     RTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPEVTWYGWDGDRLTTI
                     QNDRSRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADTLQQSGGE"
BASE COUNT          481 a          627 c          604 g          303 t
ORIGIN      
        1 gaacacgcgg acggcagcgt cacgcagagt cagtttgacg ccgtgggcag gctcaggaca
       61 cagacggatg ccgcaggccg gacaacagaa tacagcccgg atgtggtgac gggcctcatc
      121 acgcgcatca ccacgccgga tggcagggca tcggcgtttt actataacca ccacagccag
      181 ttaacgtcag ccaccgggcc tgacgggctg gaaatacgcc gggaatatga tgaatggggc
      241 cgtctgattc aggaaactgc ccctgacggc gatatcatcc gctaccgtta tgataatcca
      301 cacagtgact taccctgcgc aacggaagat gccaccggta gccggaaaac catgacgtgg
      361 agccgttacg gtcagttgct gagcttcacc gactgttccg gttatgtaac ccgttatgac
      421 catgaccgct tcgggcagat gacggcggtg caccgcgagg aagggctgag tcagtaccgc
      481 gcatacgaca gccgtggaca gttaattgcc gtgaaagaca cgcagggcca tgaaacgcgg
      541 tatgaataca acgccgccgg tgacctgacc gccgtcattg ccccggacgg cagcagaaac
      601 gggacacagt acgatgcgtg gggaaaggcc atccgtacca cgcagggcga gctgacgcgc
      661 agtatggaat acgatgctgc aggacgggtc atccgcctga ccagtgaaaa cggcagccac
      721 accaccttcc gttacgatgt actcgaccgg ctgatacagg aaaccggctt tgacggccgc
      781 acacagcgtt atcaccacga cctgaccggc aaacttatcc gcagcgagga tgaggggctg
      841 gtcacccact ggcactatga cgaagcagac cgcctcacgc accgcaccgt gaatggcgaa
      901 accgcagagc agtggcagta tgacaaacgt ggctggctga cagacatcag ccatctcagc
      961 gaagggcacc gggtgacggt gcattacagg tatgatgaga aaggccggct gaccggtgag
     1021 cgccagacgg tgcatcaccc gcagccggaa gcactgctct ggcagcatga gaccagacat
     1081 gcgtacaacg cgcagggact ggcgaaccgc tgtataccgg acagcctgcc cgccgtggaa
     1141 tggctgacct acggcagcgg ctggctggca ggtatgaagc tcggcgacac accgctggtg
     1201 gatttcaccc gcgaccgcct gcaccgggaa acgctgcgcc gcttcggccg ctatgaactc
     1261 accaccgctt atacccctgc cgggcagtta cagagccagc acctgaacag cctgcagtat
     1321 gaccgcgatt acacctggaa cgacaacggc gaactcatcc gcatcagcag cccgcgccag
     1381 acccggagtt acagctacag caccaccggc aggctgaccg gcgttcacac caccgcagcg
     1441 aaccttgata tccgcatccc gtatgccaca gacccggcag gtaaccgcct gcccgacccg
     1501 gagctgcatc cggacagcac cctcagcatg tggccggata accgtatcgc ccgtgacgcg
     1561 cactatcttt accggtatga ccgttacggc aggctgacgg agaaaaccga cctcatcccg
     1621 gaagggggta tccgtacgga tgatgagcgc acccaccggt accattacga cagtcagcac
     1681 cggctggtgc actacacgcg gacacaatat gcagagccgc tggtcgaaag tcgctatctt
     1741 tacgacccgc tgggccgcag ggtggcaaaa cgggtgtggc ggcgtgaacg tgacctgacg
     1801 ggctggatgt cgctgtcacg gaaaccggaa gtgacctggt acggctggga cggcgaccgg
     1861 ctgaccacaa tacagaacga caggagccgc atccagacga tttatcagcc ggggagcttc
     1921 acgccactca tcagagttga aaccgccacc ggtgagctgg cgaaaacgca gcgccgcagc
     1981 ctggcggata cccttcagca gtccggcggc gaaga
//
LOCUS       DAJVSY010000292         1975 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.294, whole genome shotgun sequence.
ACCESSION   DAJVSY010000292 DAJVSY010000000
VERSION     DAJVSY010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1975)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1975)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1975
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.294"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..440
                     /locus_tag="OQQ19_004200"
     CDS             <1..440
                     /locus_tag="OQQ19_004200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000291745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805593.1"
                     /translation="HGWNATEFSWFRYGQYNETGIYISIEKTIIITITVSGGCFKKEY
                     SIVSHMLVTDTITEATLYENGLYTRHIRLSRPVSDSKYPLPPGSQLIKNMTLRLRLQD
                     QQEETSVTLFQGKMSTDGNNYYIIKGKVSSVLLLLKMLQINHA"
     gene            complement(843..1243)
                     /locus_tag="OQQ19_004201"
                     /pseudo
     CDS             complement(843..1243)
                     /locus_tag="OQQ19_004201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000998048.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            1247..1822
                     /locus_tag="OQQ19_004202"
                     /pseudo
     CDS             1247..1822
                     /locus_tag="OQQ19_004202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001368704.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            1873..1975
                     /locus_tag="OQQ19_004203"
                     /pseudo
     CDS             1873..1975
                     /locus_tag="OQQ19_004203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          502 a          480 c          525 g          468 t
ORIGIN      
        1 agcatggctg gaatgcaact gagttctcat ggttccgata cggacagtat aacgaaacgg
       61 gtatttacat ctcgatcgag aagaccatta tcattacaat caccgtttct ggtgggtgct
      121 ttaaaaaaga atacagcatt gtctcccaca tgctggtcac tgacaccata acagaggcca
      181 ccctgtacga aaacgggctg tatacgcgcc acatcagact cagtcgccca gtatctgaca
      241 gcaaataccc cttgccaccc ggatctcagc tcattaaaaa tatgacctta cgactgcgcc
      301 tgcaggatca gcaggaagaa acatccgtga cattatttca gggaaaaatg agtaccgacg
      361 gaaataacta ttacatcatc aaaggtaaag taagctcagt acttctgtta ttaaaaatgc
      421 tgcagattaa tcacgcctga tctctgtccc ggtattttag cccgaggtat attctgaaat
      481 atcattcatc atgaccggcg tttatacaaa cgccggtcat tcgctaacag cttcaccgtt
      541 ccttccccca tccaggttcc gcatgagcgt gttgtaatgt tcataagcgt attatcgtaa
      601 gcttccgggg aactcatatt gacgcgtttt tcaggcgcgc gtcatcggcg gcgcatacga
      661 acgatcgtgg tttgataacg gttgatttat tttgttgcac aggggcgatc gccaggcagg
      721 taccggaggc gggctctgaa gtactgagta gggtgatcgc gtcaggccgc gaagtactga
      781 ctcggggatt aatagcaggt gatgagtaag cgtacagcga gggccgtatt gacggggatg
      841 tgttattcag ctggcagtgc tatgcgccac ggaagcagtt cgctgacccg gttgaccggc
      901 cagtctgcta tgacgccaag cacatggcga aggtagcttt ctggatccac gtcattcagt
      961 ttgcacgtcc cgatcaggct gtacagtagc gctccccgct caccaccatg gtcagagccg
     1021 aagaacagga agtttttacg acccagactg accgcccgca aggcattttc agcgatgttg
     1081 ttgtcgattt ccacccagcc atcgttcgca tagtacgtca gtgccggcca ctggttaagt
     1141 gcgtacgcga acgccttcgc caactctgag tgtcgcgaca gggtcttcat cttttccgca
     1201 accagctttc cagggatttc aacagcggtt tcgtttttcg ctgacaccat ggagggagtg
     1261 gttaaaagag caacgagaaa gtggtaatta taacgccagc cggatatggc gggaaatggt
     1321 ggcccgggga tttacaggca gtgaaaccat cgtcagggat gcggttgcca aatggcgtaa
     1381 aggctggaac ccaccggtta ctactgccgt cagacttcct tcagtgtccc gggtaagccg
     1441 ctggttgatg ccctggagaa taaccaggga tgaagaaaat tatgcttccc gatttattag
     1501 tctgatgtgt gaaaaagaac ctgagctgaa aatagcgcag caactggcac tcgagttcta
     1561 ccgtattctg aaaacccaaa ataaatcaca gctaagcagt tggttcactc gagtccacga
     1621 aagcggttca gcagaatttc ggcgcgtggc ggcggggatg gaagctgatg ctgcagctat
     1681 atgtgaggca atcagtagtc gctggagtaa tggtgttgtc gaaggtcatg taaatcgcct
     1741 gaagaagatg ctgaaacgcc agatgtatgg tcgagcagga tttgaactac tcaggcagag
     1801 ggtaatgagt ccactggcat gaaaatctcc acccaggttg cggaagagcc acttttcatc
     1861 cgtcgttgac agttataccg ccagtcagaa atataccgtc gtcagggcgt ggagctgagc
     1921 cgtgccacac tgggtcgctg gaccggtgcc gttgctgaac tgctggagcc gctgt
//
LOCUS       DAJVSY010000293         1952 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.295, whole genome shotgun sequence.
ACCESSION   DAJVSY010000293 DAJVSY010000000
VERSION     DAJVSY010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1952)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1952)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.295"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(26..>1952)
                     /gene="pdeF"
                     /locus_tag="OQQ19_004204"
     CDS             complement(26..>1952)
                     /gene="pdeF"
                     /locus_tag="OQQ19_004204"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase
                     PdeF"
                     /protein_id="HCS1805594.1"
                     /translation="FIIIIIIILCWGGYRVFTPRRNNVSHGDTRLISQRIFWQIVFPA
                     TLFLILFQFAAFVGLLASRENLVGVMPFNLGTLINYQALLVGNLIGVPLCYFIIRVVR
                     NPFYLRSYYSQLKQQVDAKVTKKEFALWLLALGALLLLLCMPLNEKSTIFSTNYTLSL
                     LLPLMMWGAMRYGYKLISLLWAVVLMISIHSYQNYIPIYPGYTTQLTITSSSYLVFSF
                     IVNYMAVLATRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDAPWSALCYLRIPGME
                     MLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQERITALDS
                     HLKQFRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAPENMQRR
                     GAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGDVYHEILLRMKGENDELI
                     SPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAHRFAINLSPTSVCQARFPF
                     EVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTGYASY
                     ARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIREA
                     VLSLGIDYMQGYLIGKP"
BASE COUNT          573 a          471 c          439 g          469 t
ORIGIN      
        1 tttcattcaa cgtatcaatt aacggctacg gcttaccaat aagataaccc tgcatataat
       61 cgatccccaa agagagcacc gcctcgcgga tctcttcgtt ttcaacgtac tctgccacta
      121 cccgcatttt cttcattcgc gccaggtggc aaatcgatgc cactatctga taatccagac
      181 tatttgacac aatattgcgg ataaaactgc cgtcaatttt aagcagatcg gcattcacat
      241 ttttaagccg tgcatagctg gcgtagccgg tgccgaaatc atcaatcgca atctggcagc
      301 ctaattcctg aagatgctgc aaggtgattt gcgcctgctt aacattggtc agagcattac
      361 tttcggtgac ttcaaaaata agttgccacg cttcaatctg atatttagcc agcaactgac
      421 tgacttcaaa aggaaaacga gcctgacata ccgaggttgg agacagatta atagcaaaac
      481 ggtgagcggg catcttcgct ctgttttcag ccataaattg cagcgtatgc tcaatgaccc
      541 acatgtcgat actcgacgat aaaccaaatt cgtgcgcgac cggcaagaag ctatcggggc
      601 tgatcagttc atcattctca cctttcatgc gcagaagaat ttcatggtaa acatcaccac
      661 gcataccggt aatcggctgg gccatcagga aaaaatggtt gtgttccagc gcctgctgta
      721 gtcgattcat catcgcgact ttatctttca attcgcgttg caaatacatt gccccgcgac
      781 gctgcatatt ttccggggcg ttggtcacga tggaaagttc ggcgaccgta tttagctctc
      841 ccagcagcag gtagatatga ttcactggcg agcgcacata gcagtaactg acgccaatct
      901 gcggttgcat cggcatgcca tcccaaaaga aacgaaattg cttgagatgg ctatccagtg
      961 cggtaatgcg ctcctggtgc gattctgtat tcagtcgcag cgcgagatcg ttacccgaaa
     1021 gctgataaac atcttcaccc ggttccagca agggtgacag ccagtgagaa agtttttgct
     1081 tgtattgaat ccgcagcatg atgccatagt tcttaaccag catttccatg ccagggatgc
     1141 gtaaataaca aagcgcagac cagggggcat cacgcaacgc gcgattcagg gcgcgaacat
     1201 ttggcagatg aaccaccggg tccacatacg caagccgctg aatgcgtctg actaccgctc
     1261 tctgacgggt tgccagtaca gccatataat tgacaataaa agagaatacc agataactgg
     1321 aggaggttat ggtcagctgc gtggtatagc caggataaat gggaatgtaa ttttgatagc
     1381 tgtggatgct gatcatcaac acgaccgccc agagcagaga aatcagctta taaccatagc
     1441 gcatcgctcc ccacatcatc aggggcagca ataatgacaa ggtataattg gtgctaaaaa
     1501 ttgtgctttt ttcatttaac ggcatgcata acagcaacaa taaagcacct aatgccagta
     1561 gccagagcgc gaactctttt ttggtgactt tggcatcaac ctgctgtttt aattgcgaat
     1621 aatagctacg taaataaaat ggatttcgca ctacccgaat gatgaagtag cacagcggga
     1681 caccgatcag attacccacc agtaaggcct gataattgat taaagtcccg aggttaaaag
     1741 gcatgacacc gaccagattt tctctgctcg ccaataatcc tacaaatgca gcaaactgga
     1801 aaagtatcag aaacagcgtt gcaggaaaca caatctgcca gaatatacgc tgggaaatta
     1861 aacgggtatc accatgtgaa acgttgttac gccggggagt aaagaccctg taaccgcccc
     1921 aacagagaat gataatgata atgataataa aa
//
LOCUS       DAJVSY010000294         1884 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.296, whole genome shotgun sequence.
ACCESSION   DAJVSY010000294 DAJVSY010000000
VERSION     DAJVSY010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1884)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1884)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1884
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.296"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            368..1156
                     /gene="virF"
                     /locus_tag="OQQ19_004205"
     CDS             368..1156
                     /gene="virF"
                     /locus_tag="OQQ19_004205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858179.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family invasion system transcriptional
                     regulator VirF"
                     /protein_id="HCS1805595.1"
                     /translation="MMDMGHKNKIDIKVRLHNYIILYAKRCSMTVSSGNETLTIDEGQ
                     IAFIERNIQINVSIKKSDSINPFEIISLDRNLLLSIIRIMEPIYSFQHSYSEEKRGLN
                     KKIFLLSEEEVSIDLFKSIKEMPFGKRKIYSLACLLSAVSDEEALYTSISIASSLSFS
                     DQIRKIVEKNIEKRWRLSDISNNLNLSEIAVRKRLESEKLTFQQILLDIRMHHAAKLL
                     LNSQSYINDVSRLIGISSPSYFIRKFNEYYGITPKKFYLYHKKF"
     gene            complement(1149..1520)
                     /locus_tag="OQQ19_004206"
                     /pseudo
     CDS             complement(1149..1520)
                     /locus_tag="OQQ19_004206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858162.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            1519..1884
                     /locus_tag="OQQ19_004207"
                     /pseudo
     CDS             1519..1884
                     /locus_tag="OQQ19_004207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611947.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          592 a          337 c          374 g          581 t
ORIGIN      
        1 aatatcaaca ccaaccggat ttgtggagcc tccagtctga aggggcttta tgcgttccgt
       61 ataggatatt atgatgctgg agttttgcga agctccactc ctttccgaac atttacacag
      121 atattgccta agaaaagtga aaccataata tggttatagt ccctttcagt gcaaatactt
      181 agcttgttgc acagagaaat agaagctgca taagctcttt cttcaaaaaa tgtaaataaa
      241 gttaaatata ggaaaaatta cttaatctat cttaataacg gaaagatttt gtatacaatc
      301 actgttacag aaatttctta gttactctgt aaacactaaa tatagtttgg tatattctgt
      361 tgaatttatg atggatatgg gacataaaaa caaaatagat ataaaggttc gcttgcataa
      421 ctatattatt ttatatgcaa aaaggtgttc aatgacggtt agctcaggca atgaaacttt
      481 gactatcgat gaagggcaaa ttgcttttat agagcgaaat atacaaataa acgtctccat
      541 aaaaaaatct gatagcatta atccatttga gattataagc cttgacagaa atttattatt
      601 aagcattatt agaataatgg aaccaattta ttcatttcaa cactcctatt ctgaggagaa
      661 aagggggtta aacaaaaaaa tattcctcct ctctgaggag gaggtttcta tcgatttgtt
      721 caaatctata aaagagatgc cttttggcaa aagaaagatc tatagtttag cttgcctttt
      781 atcagctgtt tctgatgagg aagctttata tacttcgata tcgatagctt cttctcttag
      841 tttttctgat cagataagga agattgttga aaaaaacatc gagaagagat ggcgtctttc
      901 tgatatttca aataacttga atttatcaga aatagctgtt agaaaacgat tggagagtga
      961 aaaattaaca tttcaacaaa tccttcttga tattcgcatg catcatgcag caaagctttt
     1021 attgaatagt caaagctata ttaatgatgt atcaagactt atcggaatat caagcccatc
     1081 ttattttata aggaaattta atgaatatta tggtataact ccaaagaaat tttacttata
     1141 tcataaaaaa ttttaaatgc ttcatagccc atcgctattg ccagatgggt tttccccaca
     1201 cctgatggcc ctagtaatac gatattttca ttacgttcta tgaagctgag tgagcgtaac
     1261 gactggagtt gcttctgcgg tgctctggtg gcgaatgtga agtcatactc ttcgaacgtt
     1321 ttcaccgccg ggaaggctgc cattcgggta tacatcgcct gtttacgttg atgacgtgcc
     1381 agtttttctt catgaagcag atgctccagg aagtccatat aactccattc ctggtctact
     1441 gcctgttgtg acagcgcagg cgctgcgctt atgtactgca cccattttgt tggacgatga
     1501 aatggaatag cccctaatat gtcaaagcca aaataccctt ttgaaaagcg ccttgaagtc
     1561 gtgaatcact acttcactac tgatgatggt tacaggatca tctcggcacg ttttggtgtc
     1621 cccgaaccca ggtcaggaca tgggttgccc tctatgaaaa acatggagaa aaaggcttaa
     1681 ttcccaaacc taaaggtgtt agtgctgatc cagagttgcg tattaaggtc gtgaaagctg
     1741 tgattgagca gcacatgtcc cttaatcagg ctgctgctca ctttatgctt gctggtagtg
     1801 gttctgtagc caggtggctg aaggtttatg aagagcgcgg agaagctggt ttacgcgcgc
     1861 tcaagattgg caccaaaaga aaca
//
LOCUS       DAJVSY010000295         1818 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.297, whole genome shotgun sequence.
ACCESSION   DAJVSY010000295 DAJVSY010000000
VERSION     DAJVSY010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1818)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1818)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.297"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(317..1465)
                     /locus_tag="OQQ19_004208"
     CDS             complement(317..1465)
                     /locus_tag="OQQ19_004208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1805596.1"
                     /translation="MSTYTRPVMLLLSGLLLLTLAIAVLNTLVPLWLAQEHMSTWQVG
                     VVSSSYFTGNLVGTLLTGYVIKRIGFNRSYYLASFIFAAGCAGLGLMIGFWSWLAWRF
                     VAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYVGTFLGQLLVSKVSTELMSV
                     LPWVTGLTLAGILPLLFTRVLNQQAENHDSTSITSMLKLRQARLGVNGCIISGIVLGS
                     LYGLMPLYLNHKGVSNASIGFWMAVLVSAGILGQWSIGRLADKFGRLLVLRVQVFVVI
                     LGSIAMLSQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGS
                     LLGPSFTAMLMQNFSDNLLFIMIASVSFIYLLMLLRNAGHTPKPVAHV"
BASE COUNT          574 a          465 c          395 g          384 t
ORIGIN      
        1 tggttggcgt agttattaac aacgttgcca aaaccccaga cagtgataaa agacatcagc
       61 gcaatgttgt accatcgcag ctgtttttcc tgaacattcc cagccataga caaatccttc
      121 gccaaaatta taggggcatc tgtaaaacga gggattatgc gcggcaaata agaagtgcgg
      181 aaatagcgaa atgcaaaatt ataacctgct gcacatttta tttttaaacg aataaaattt
      241 ggaataaagc aagtcagata gaagaaacaa aaaagcagag tgtgaaacag taagttcaca
      301 ctctgcttga attcatttac acgtgagcaa cgggtttcgg cgtatgaccg gcgttgcgca
      361 gcagcatcag caaatagata aacgatacgc tggcgatcat gataaacaat aaattatcgg
      421 agaaattctg cattagcata gcggtaaatg acgggccaag cagacttccc acagtatagc
      481 tcaacagtaa ggcctggttc atcgccacca gttgatgatg ttcaactttc tcgcaagccc
      541 atgccatcgc caccggatat agcgtaaagc cagcggcacc gaggatgaat aacgctgggg
      601 ccatcgccgc ctggctaagc atcgcgatac tgccgagaat gacgacaaag acctgaacac
      661 gcaacaccag cagtcgacca aacttatccg ccagacgtcc aatcgaccat tgtccaagga
      721 tacccgcact gaccagtacc gccatccaga aaccaatgct ggcattgctc acccctttgt
      781 gattgaggta cagcggcatc aggccatata gagatcccag aacgattcct gagataatgc
      841 agccattcac gccaagccgc gcctgacgga gttttagcat tgacgtaatt gacgtcgaat
      901 catggttttc agcctgctga ttcagcacac gcgtaaacaa cagcggtaag atccctgcca
      961 acgtcaaacc tgtaacccac ggcaatacgg acatcagctc ggttgaaact ttgctgacca
     1021 gtaactggcc taaaaacgtt cccacgtaat aaaccatcat atacgcagca agcaaacgcc
     1081 cacggttacg tgacgtccca ctgcacatca gcgcgctctc aacaaccacc caaatcatgg
     1141 cacagccgac gcccgcgaca aaacgccaag ccaaccagct ccagaatcca atcatcaggc
     1201 caaggccggc acagccagcg gcaaaaatga aggaggccag ataatagctg cggttaaagc
     1261 caatgcgctt aatgacatac cctgtcagca atgtaccgac aaggttgccg gtaaaatagg
     1321 atgagctgac aacgcctacc tgccatgtgg acatgtgttc ctgggcgagc caaagcggca
     1381 cgagtgtatt taacaccgca atcgccagag tcaacaaaag caggccagac agcaaaagca
     1441 tgacaggccg ggtatacgtg gacatgaatt aaaaccgtga ggaagttcaa atttcatgcg
     1501 catcatgcca ccgccaaaac attgtcaatg agtgaaaata cgcgatatcc cagcggcggt
     1561 attatcgatt tatattactc attcataacg ctaatgctga agagatgatt agtctcatct
     1621 gattgttttt attgaactaa cacaaatttc atacgcttcg ttcagtcgaa aaatttcatg
     1681 gtcacagcaa actcatattt cccgtctatg ctttcagagc aatgcatcgc gtctgatcga
     1741 tttcagacgt accactgact ctcgaaagga gaagaggatg accaaaccgt atgttcgtct
     1801 tgataaaaat gatactgc
//
LOCUS       DAJVSY010000296         1764 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.298, whole genome shotgun sequence.
ACCESSION   DAJVSY010000296 DAJVSY010000000
VERSION     DAJVSY010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1764)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.298"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..279
                     /locus_tag="OQQ19_004209"
     CDS             <1..279
                     /locus_tag="OQQ19_004209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213046.1"
                     /note="oxidoreductase, Fe-S subunit; terminal electron
                     transfer protein for the reduction of DMSO; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase subunit B"
                     /protein_id="HCS1805597.1"
                     /translation="PQYNETKGHMTKCDGCYDRVAEGKKPICVESCPLRALDFGPIDE
                     LRKKHGDLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPKEV"
     gene            281..1144
                     /gene="dmsC"
                     /locus_tag="OQQ19_004210"
     CDS             281..1144
                     /gene="dmsC"
                     /locus_tag="OQQ19_004210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit
                     DmsC"
                     /protein_id="HCS1805598.1"
                     /translation="MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRV
                     IACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSIFFAVGGIGW
                     LLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYNSIDTVPTWYSIWTPMGFFLTMF
                     MGGPLLGYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAA
                     LVPDYGALMSWRIVLLAVALCLWIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYG
                     LHMTVGMAVAS"
     gene            complement(1179..>1764)
                     /locus_tag="OQQ19_004211"
     CDS             complement(1179..>1764)
                     /locus_tag="OQQ19_004211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HCS1805599.1"
                     /translation="VLLVDHQAGLLSLVRDIEPDKFKNNVLALGDQAKYFNLPTILTT
                     SFETGPNGPLVPELKAQFPDAPYIAHPGNINAWDNEDFVKAVKATGKKQLIIAGVVTE
                     VCVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRMSQAGAQLMTWFGVACELHR
                     DWHNDIEGLATLFSNHIPDYRNLMTCYDTLTKQK"
BASE COUNT          380 a          425 c          489 g          470 t
ORIGIN      
        1 ccgcaatata acgaaacgaa aggccatatg accaaatgcg atggttgtta tgaccgtgtt
       61 gcggagggta aaaagccgat ctgtgttgaa tcttgtccgc tgcgggcgct ggatttcggc
      121 cctatcgacg agctgcgtaa aaaacatggc gatctggcgg ccgttgcgcc gttgccgcga
      181 gctcacttta ccaaaccgaa tattgtgatc aaacccaatg ccaatagccg cccgaccggg
      241 gataccactg gctatctggc aaacccgaag gaggtgtgag atgggaagtg gatggcatga
      301 atggccgctg atgatcttca cggtcttcgg gcaatgtgta gcaggtggtt ttatcgttct
      361 ggctttggcg ctgctcaaag gcgacctgcg agcagaagcc cagcagcgtg ttatcgcctg
      421 catgtttggt ttatgggtgc tgatgggcat tggctttatc gcctctatgc tccatcttgg
      481 ttcaccaatg cgcgctttta actcgctcaa ccgggtaggg gcttcagcac tcagtaacga
      541 aatcgccagc ggttcgatct tttttgccgt aggcggcatc ggctggttgc tggcaatgct
      601 gaaaaagctg tcaccggcat tgcgtacgct gtggctgata gtgacgatgg ttcttggcgt
      661 catctttgtc tggatgatgg tgcgtgtgta taacagcatt gataccgttc cgacctggta
      721 cagcatctgg acgccgatgg gcttcttcct gacgatgttt atgggcggcc cgttactggg
      781 ttacctgttg ttgagtctgg ctggcgtcga tggctgggcg atgcgtctgc tgccagcaat
      841 ttctgtactg gcactggtag tgagtggcgt ggtatcagtg atgcagggcg cagagctggc
      901 gactattcat agttctgtgc agcaggccgc agcgctggtg ccggactatg gtgcgctgat
      961 gtcctggcgg atcgtgcttt tggccgttgc cctgtgcttg tggattgcac cacagctaaa
     1021 aggttatcag cctgcggttc cgctactttc tgtatcattc attctgcttc tggcagggga
     1081 attaatcggt cgcggcgtat tctatggttt gcatatgacc gtggggatgg ccgtcgcaag
     1141 ctaatcataa caaccggggt ttcggccccg gttctctttt atttctgctt cgttaacgtg
     1201 tcataacagg tcatcaaatt acgataatca ggaatgtggt tagagaacaa cgtcgccagt
     1261 ccttcaatat cattatgcca gtcgcgatgc agctcgcacg ccacgccgaa ccatgtcatc
     1321 aattgcgcac cagcttgcga catgcgatcc catgccgaat gccgggtaat ttcattaaag
     1381 gtccctgacg cgtcagtcac gacaaagacg tcaaaccctt cttcaatggc tgaaagcgcc
     1441 gggaatgcca cgcaaacttc ggttaccaca ccggcaataa ttaactgttt tttacctgtc
     1501 gctttgacag cttttacaaa atcttcgtta tcccaggcgt taatatttcc cgggtgagca
     1561 atgtaaggtg catcggggaa ttgtgctttc agttctggaa ctaatgggcc gttaggaccg
     1621 gtttcaaaac tggtggtaag aatagttggt aagttgaaat acttagcctg gtcacccagc
     1681 gccagcacgt tatttttaaa cttatcgggt tcgatatccc gtacaaggga aagtaaacca
     1741 gcctggtgat caacaagcaa aacg
//
LOCUS       DAJVSY010000297         1737 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.299, whole genome shotgun sequence.
ACCESSION   DAJVSY010000297 DAJVSY010000000
VERSION     DAJVSY010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.299"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            67..807
                     /locus_tag="OQQ19_004212"
     CDS             67..807
                     /locus_tag="OQQ19_004212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone"
                     /protein_id="HCS1805600.1"
                     /translation="MFFNTKHTTALCFVTCMAFSSSSIADIVISGTRVIYKSDQKSVN
                     VRLENKGNNPLLVQSWLDTGDDNAEPGSITVPFTATPPVSRIDAKRGQTIKLMYTAST
                     SLPKDRESVFWFNVLEVPPKPDAEKVANQSLLQLAFRTRIKLFYRPDGLKGNPSEAPL
                     ALKWFWSGSEGKASLRVTNPTPYYVSFSSGDLEASGKRYPIDVKMIAPFSDEVMKVTG
                     LNGKASSAKVHFYAINDFGGTIEGNASL"
     gene            842..1737
                     /locus_tag="OQQ19_004213"
                     /pseudo
     CDS             842..1737
                     /locus_tag="OQQ19_004213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414681.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus outer membrane usher protein"
BASE COUNT          502 a          367 c          369 g          499 t
ORIGIN      
        1 aatagtgtta ataatttcta tttttatatt attccctgtt ttaattaact ctgtcaggga
       61 tggtttatgt tttttaacac caaacataca acagctttat gcttcgtaac ctgtatggct
      121 tttagttcat cgtctattgc ggacattgtc atttcgggta ctcgcgtaat atataaaagc
      181 gatcaaaaaa gtgtcaacgt acgtctggaa aataaaggga ataacccgtt gcttgtccag
      241 agttggttag atactggcga tgacaacgct gagcctggca gtattacagt cccttttact
      301 gccacgccgc cagtatcgcg tattgatgcc aaacgtgggc aaacaatcaa attaatgtac
      361 acagccagca cctcactgcc taaagacaga gagagcgtgt tctggtttaa cgtactggaa
      421 gttccaccaa aaccagatgc agaaaaggtc gcgaatcaaa gtctgctgca actggcattt
      481 cgcacacgta taaaactttt ctatcgcccg gatggattga agggaaatcc ctctgaagcc
      541 ccgttagccc tgaagtggtt ctggtcaggt tcagaaggta aggcgtcatt gcgagtgacc
      601 aatccaaccc cttactacgt ctcttttagc agtggtgatt tagaagctag cggtaaacgc
      661 tatccgattg atgtgaaaat gattgcacca tttagtgatg aggtcatgaa agtcactggc
      721 cttaatggca aagcaagttc tgcaaaagta catttttacg ccattaatga ttttggtggc
      781 accattgaag gtaatgccag tctgtaatca ggcaaggata taattccgca ggaagcataa
      841 cgtgactata aaaccaacta aaaattatca taatcatctg acccgtatcg ctacgttttg
      901 cgcgctgctg tattgcaata gtgctttctg tgctgaactt gttgaatatg accatacctt
      961 cctgatgggg cagaatgcct caaatattga tctcagccgg tatagtgaag gtaaccctgc
     1021 tataccgggt atgtacgacg tcagtgttta tgtcaacgat caacctatta ttaaccaaag
     1081 cattacattt attgaaattg aaggaaaaaa aacgcacaag cctgtatcac acttaagaat
     1141 ttattgcagt ttcatataaa ttctcccgat ataaataacg aaaaagccgt tctgcttgcc
     1201 agggatgaaa cactcggcaa ttgccttaat ttgacggaaa ttattcctca ggcttctgtt
     1261 cgttatgacg ttaacgagca acgtctggat atagacgttc ctcaggcatg ggtaatgaaa
     1321 aattaccaaa actatgttga tccatcgtta tgggaaaatg gcattaatgc ggccatgttg
     1381 tcatacaacc tcaacggata tcatagtgaa actcctggtc gaagaaatga cagcatttat
     1441 gctgctttta acggtgggat gaatttaggt gcatggcgac tgcgtgcctc aggcaactac
     1501 aactggatga ccgattctgg cagtaattat gattttaaga atcggtatat acagcgtgat
     1561 atcgcctcgc tgcgttctca actcattctt ggtgagtctt atacaacggg cgaaaccttt
     1621 gattctgtca gtatccgcgg cattcgttta tacagcgaca gccgcatgtt gcctccgaca
     1681 ttagcgagtt ttgcgcctat cattcatggc gttgctaata ccaacgccaa agtcact
//
LOCUS       DAJVSY010000298         1715 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.300, whole genome shotgun sequence.
ACCESSION   DAJVSY010000298 DAJVSY010000000
VERSION     DAJVSY010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.300"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            122..1399
                     /locus_tag="OQQ19_004214"
     CDS             122..1399
                     /locus_tag="OQQ19_004214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1805601.1"
                     /translation="MNKIKNYRWHMIALVCFITVINYLDRTALGIAAPTIMETTGITK
                     EQYSWIVSAFQLAYTLGQPVMGFFIDTVGLKLSFAICAAIWGLATMGHALTGTWSGLA
                     FMRALMGFSEASAIPAGVKTASTWFPAKERGVATGVFNMGTSLGAMLAPPLIAWCIMF
                     HSWQFAFIVSGSLALLAALFWFFCYKDPKDAKRLSDEERHYIESGQEQHLKTDKKEKT
                     SIKHILSQRNFWGIGIARFLADPAWGTINFWVPIFFVETLHFSLKEIAMFVWLPFLLG
                     DLGCLASGFVAKFFHDRGVSLINSRRITFTIAAVIMMRIGLVSIVENPYIAVLLISIG
                     AFSHQCLSTVAATLGGDLFKKDEVATAVGMAGACAWSGQLIFNLFIGAFVHIIGFAPF
                     FIALAFFDIIGAIALWTLIKVKDEEPQVQLATH"
BASE COUNT          447 a          367 c          373 g          528 t
ORIGIN      
        1 ttttaaaggg agaaatttac acacaataat tttcaatatt tcctctgtac ctgattttta
       61 ttacctatta cacggaaata ccaacaacca gggtttatta atataattaa aaggtttaaa
      121 catgaataaa ataaagaatt accggtggca tatgattgcc ctcgtatgct ttatcactgt
      181 aatcaattat ctggacagaa cggcgttagg tattgcggct ccaacgatta tggagacaac
      241 cggaataact aaagagcaat attcatggat tgtcagtgca ttccagttgg cctatacatt
      301 agggcaaccg gtaatgggct tctttattga taccgtgggt ctgaagttaa gttttgcgat
      361 atgtgccgca atttggggcc tggcgacaat gggccatgca ctaaccggaa cgtggtctgg
      421 tctggcattt atgcgcgccc tgatgggttt cagcgaagcg tcggcaattc cggcgggtgt
      481 aaaaaccgca tcaacatggt tcccggcaaa agagcgtggc gtggcgacag gtgttttcaa
      541 tatgggcacc tcactcggcg cgatgcttgc tccaccgttg attgcctggt gcattatgtt
      601 tcatagctgg caatttgcgt ttattgtttc aggtagtctt gctttgctcg cggctttatt
      661 ttggttcttt tgttataaag atccgaaaga tgccaaacgc ctttctgatg aagagcgcca
      721 ctatattgaa tcagggcaag aacagcatct taaaacagat aagaaagaaa aaacgtcaat
      781 caagcatatc ctcagccaac gtaatttctg ggggattggc atcgcgcgtt ttctcgcaga
      841 cccggcatgg ggaaccatta acttctgggt gccgattttc ttcgtcgaaa cgctgcattt
      901 tagcctgaaa gaaattgcca tgttcgtctg gctgcctttc ctgctgggcg atctcggctg
      961 tttagccagt ggttttgtcg cgaagttctt ccacgatcgc ggcgtgagtt taattaactc
     1021 acgaagaatt accttcacta ttgcagccgt cattatgatg aggattggcc tggtgagtat
     1081 tgtcgaaaat ccctacattg ccgtattact gattagtatt ggcgcgttct cgcatcaatg
     1141 tctttctact gtagcagcaa ctctgggtgg cgatctgttc aaaaaagacg aagtagctac
     1201 cgcagtgggt atggcaggag cctgtgcgtg gagcggtcag ttgattttca acctgttcat
     1261 cggggcattc gttcacatta tcggcttcgc gccgttcttt attgccctgg ctttctttga
     1321 cattattggt gctattgcgt tgtggacgct tatcaaagtt aaagatgaag aaccacaagt
     1381 acagttagct acccactaat tattttaaat aaaaacgcta taattgaggt tatggcgttt
     1441 ttaaagaagc ttgagttatc gaaccccgct taccaacgcg ttgtcagtca tctcccccct
     1501 ccctggtgca tcgttatatc cgtgatgagc gatttttgat attaatatct ttcaccatcc
     1561 gctattttca ccacttcaga aaacaaactt atttttatta atatcaattc tttttctttg
     1621 aacattcaac tgcgatattt gtaaaaacat taaacaggca acaataaaat gacattacca
     1681 acaactattt attcattccc cgcatattta cctcg
//
LOCUS       DAJVSY010000299         1684 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.301, whole genome shotgun sequence.
ACCESSION   DAJVSY010000299 DAJVSY010000000
VERSION     DAJVSY010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1684)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1684)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1684
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.301"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            1..234
                     /locus_tag="OQQ19_004215"
                     /pseudo
     CDS             1..234
                     /locus_tag="OQQ19_004215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000544830.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            655..1233
                     /locus_tag="OQQ19_004216"
     CDS             655..1233
                     /locus_tag="OQQ19_004216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805602.1"
                     /translation="MKVSFKSLGYIFHDIYNKKHTIDEFNDVVRKAVLSGKINELNAC
                     HKVAIFLAEKDNEITKKDKAKIIDTLTENYSIEFQQLMNISERTLNSSLYITPGESGF
                     VSFVNREGKICHTAYVKSSDNSMAYYHANYSSIDKYITDMCGLICMRHIESTCIIFYM
                     LDEKVLSAIAEFMNEKGWRAAFCSAKNLYKCV"
     gene            complement(1342..1600)
                     /locus_tag="OQQ19_004217"
                     /pseudo
     CDS             complement(1342..1600)
                     /locus_tag="OQQ19_004217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611146.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
BASE COUNT          553 a          291 c          386 g          454 t
ORIGIN      
        1 actgtcgata tgaaaaagcg agcatcatac tgacgtcaaa caaaggggtc gcagactggg
       61 gagaaatgtt cggagatcac gtgctggcaa cagcgatcct agatcggctg ctacacgctg
      121 aatatcaaag gagagagtta ccggttaaaa gagaaacgta aagctggagt gctgaccaaa
      181 aacacaacgc caatcagtga tgatgaaatg gtggaaaacg gacagcatca gtaacgaaag
      241 tatcttagca ggcatgaaaa tcgtccgcat cccctaaacg gtcaaaatgc ttctgccgtg
      301 aaggagggag aatgccatct catcacttat atctggcgaa tgaaacacag atggtcggcc
      361 ttgcccccaa acacacggcg gtgcaaaatg gaatggcaga aaacttcgtc aaaacgatga
      421 aatatgatta aatcagtgtt atgttcgaac ctgacgtgtt aacagcagta aagtagtctc
      481 gcgaaggtgt tcaaacatta taatgaatgg catcctcata gtgcgcaggg ttatcgcttg
      541 ctgcggaaat atctgaagcg acgtaccagt aatggggaaa atgatagctg gtttctgaaa
      601 atatagagga aaatgtgata tatatatcct gttaatattt aaggagaata taaaatgaaa
      661 gtctcgttta agtctttagg ctatattttt catgatatat ataataaaaa acacactatc
      721 gatgagttca acgatgtggt aagaaaagca gttttatcag gtaaaattaa cgagctgaat
      781 gcatgtcata aagtggcaat ttttcttgcc gaaaaagaca atgagataac aaagaaagac
      841 aaagccaaga taatagatac attaactgaa aactattcca ttgaatttca acaattaatg
      901 aatattagtg agcgcacgtt aaattcatct ttatatatta ctcctggtga aagtggtttt
      961 gtcagttttg ttaatcgtga aggaaaaata tgtcatactg catatgtaaa atcatcagat
     1021 aatagcatgg catattacca tgcaaattat agcagcattg acaaatatat tacggatatg
     1081 tgcggcctta tttgtatgag gcatattgag tctacttgca ttatttttta tatgcttgat
     1141 gaaaaagttt tatctgccat tgctgaattt atgaatgaaa aaggatggcg ggctgcgttt
     1201 tgttcagcaa agaacttata taaatgtgtt taattttaga aaaactattt ggtaaaatcc
     1261 aacaagagtc gagaggttcg cgttgcttca gcagggcctc agcctgttca accagactca
     1321 gttgcaggtc gtgacgcaga tttagtggtg gtggttgatt gtcagatacc agccgatgat
     1381 cttatagtgc atatcatcag actttgagaa gcatatggtt ttgcgggtaa gccgcttaag
     1441 atgtgtccgc aggttcagat tatgtcgctc tatccgctga gtgcatttct tgcttataac
     1501 atgactggtt gaggacaata aagttcggta taccggctca ggcatcggtc atgtagaagg
     1561 caatgctaaa ctggctcagc aaactaagag cagcgcgcat ccacttaccc aatgcggttg
     1621 agaaaatagc cttcgatcgc tttcatgtgg cgaaacaacc gggtgaggtg gtggataaaa
     1681 cccg
//
LOCUS       DAJVSY010000300         1676 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.302, whole genome shotgun sequence.
ACCESSION   DAJVSY010000300 DAJVSY010000000
VERSION     DAJVSY010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1676)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1676)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.302"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            14..172
                     /locus_tag="OQQ19_004218"
     CDS             14..172
                     /locus_tag="OQQ19_004218"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805603.1"
                     /translation="MYLSRISEAISLSAGEVAHRLIVPSSDIDLGETELPVLGEITWQ
                     AYDPARSK"
     gene            172..762
                     /locus_tag="OQQ19_004219"
     CDS             172..762
                     /locus_tag="OQQ19_004219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000380343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2313 domain-containing protein"
                     /protein_id="HCS1805604.1"
                     /translation="MDSLQDDYTKLLYGLMQPGPAWSDTDGVLDGLAPSLVRVHQRAD
                     ELVIEIDPGQSTELIERYEELYGLPDSCSPVGTQTLRQRQQRLEAKANVAGGINEQFF
                     LDQLEALGYTGVTIEQFQHLDASPDPEWGDRWRYFWRVTLPVDAGAQWQTCTDACNTP
                     IRTWGDTVAECVINKLYPSHTVVLFSYPDEDEDAQD"
     gene            749..1414
                     /locus_tag="OQQ19_004220"
     CDS             749..1414
                     /locus_tag="OQQ19_004220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004981765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1805605.1"
                     /translation="MHRIDTLTAVKDKFGPGKNGFTDGNLRTGRLATWLNSAMWNAIQ
                     EEICGVIEKAGIELNKEEHDQLYKAILLLVGGAINEEALLIKNNLSDVEDRDEAVENL
                     GLKPTVDKAKNAVQRDGDTMTGELKIRGVNALRIFNEAFGLIFRRSEECLHLIPTSEG
                     QGENGDIGPLRPFTINLRTGEISMSHKVSVGGGSQVNGALGIGVQNALGGIQLLSGIT
                     IQV"
     gene            1435..>1676
                     /locus_tag="OQQ19_004221"
     CDS             1435..>1676
                     /locus_tag="OQQ19_004221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1805606.1"
                     /translation="MDVYANGQHVFRFQNGVAIALKNIQAGNAKKFTLSSANNSTKNA
                     AFYLWGNPSRPVVAELGDDSGWHFYSQRNTDGSITFA"
BASE COUNT          424 a          361 c          483 g          408 t
ORIGIN      
        1 gccagagggg cgtatgtatc tgtccagaat cagtgaggcc atcagtttgt ctgctggtga
       61 agtggcccac cggttaatcg tcccttcatc ggatattgac ctgggggaga ccgagcttcc
      121 ggtgctcggc gagatcacct ggcaggctta tgacccggca aggagtaaat aatggattcg
      181 ttacaggatg attatacaaa gctgctgtac ggactgatgc agccggggcc tgcatggtca
      241 gataccgacg gtgtacttga cggtctggca ccatcgcttg tgcgtgttca ccagcgggct
      301 gatgaactgg tgattgaaat cgatcccggt cagtccacag agctgattga acgttatgaa
      361 gaattgtatg gtttacctga ttcctgttcc cctgtcggaa cccagacatt acgccagcgt
      421 cagcaacgtc ttgaagcaaa agccaatgtg gctggtggca taaatgagca gttcttcctg
      481 gatcagcttg aggcgctggg atataccggc gtaacgatcg aacagttcca gcacctggat
      541 gcaagccccg atccggaatg gggagatcgc tggcgttatt tctggcgtgt gacgttgccg
      601 gtggatgccg gtgctcagtg gcagacatgc acggacgcct gcaacacacc gatccggacg
      661 tggggggata cggttgcgga gtgcgtgatt aataaattat atccgtcaca caccgtcgtt
      721 ttattttcct atccagatga ggatgaagat gcacaggatt gatacgctga ctgcggtaaa
      781 agataagttt ggtccgggta agaacggatt tactgacgga aatcttcgca caggacgtct
      841 tgctacctgg ctgaacagtg ccatgtggaa tgccattcag gaggaaatct gtggtgtcat
      901 tgagaaggcc gggatagaac tgaataaaga agaacacgac cagctatata aggctatatt
      961 attgctggtg ggcggtgcaa ttaacgaaga ggcattgctg ataaaaaata acctttcgga
     1021 tgtggaagac agggatgagg ctgttgaaaa cctcggatta aaacccacgg tggataaggc
     1081 aaaaaatgcc gttcagcgtg atggcgacac catgaccgga gagctgaaaa tccgtggtgt
     1141 taatgcgctg aggattttca acgaagcttt tggcctgatt tttcgtcgtt cggaagagtg
     1201 cctgcacctt attcccacca gtgaaggtca gggggaaaat ggcgatattg gtcccctgcg
     1261 cccgttcacc attaatctgc ggacgggtga aatatccatg tcgcataaag tgtctgttgg
     1321 cggtggttcg caggtcaatg gtgcgctggg tatcggcgtt cagaacgccc tggggggaat
     1381 tcaattgctt tcggggataa cgatacaggt ataaaacaaa acggcgacgg cattctggat
     1441 gtttatgcga atggacagca tgtatttcgt ttccagaatg gtgtggcgat agcgttaaaa
     1501 aatattcagg ccggaaatgc taaaaaattc acgttatcca gcgccaacaa ctccacgaaa
     1561 aatgcagcgt tttatttgtg gggtaatcca tccaggcctg ttgttgcaga gcttggtgat
     1621 gattccggct ggcatttcta cagccagaga aataccgatg gtagtatcac attcgc
//
LOCUS       DAJVSY010000301         1666 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.303, whole genome shotgun sequence.
ACCESSION   DAJVSY010000301 DAJVSY010000000
VERSION     DAJVSY010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1666)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1666)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.303"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            13..1268
                     /locus_tag="OQQ19_004222"
                     /pseudo
     CDS             13..1268
                     /locus_tag="OQQ19_004222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415521.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YccE family protein"
BASE COUNT          546 a          262 c          341 g          517 t
ORIGIN      
        1 tagacgctat atatgggtag taatatacat ggaattagtt gcactgcaaa taattatttg
       61 aaacaggcct ggaacgatat aaaaaatgag tacgaaaaaa atcaaacata ttcaatcacg
      121 ctttttgaaa acacactggt gtgttttatg cggttataca atgaactcag acgtaaagta
      181 aatgaagagg atactccatg tctggaatgt gaatcactag aaaaagaatt tgaggaaatg
      241 cagaatgata atgatctatc attatttatg agaacattgc gtactaatga tacacaaatt
      301 tattcagggt ttcaggaggt attacatata ctatacaata tgttcaaaat gttgatattg
      361 ttagagtgtc cttgccgggc agaggttcag agtctatcac agattttaaa ggttattatt
      421 ggtatggctt tatggaatat attgaaaaca ttactgcgtg tgatgatgtt ttttctgagt
      481 attgtttaga tgatgaaaat atgagtatcc agccagaaca gataaatacg ccgggaatat
      541 ctgatttaga tactggtatt gatttgtctg gcatatcttt tattcagagt gaaattaata
      601 aaacatatgg attaaaatac gctccagtag atggcgatgg atattgtctg ttaagagcta
      661 tactggtttt aaaagaacat gagtattcat gggcgctggg cggccataag acgcaaaagc
      721 aagtatacga agagtttatt aaaattgttg ataaacaaac gatcgaggct cttgttgata
      781 cggcattcta taatctcagg gaagatgtaa agacgttatt tggcgttaat ctacaatctg
      841 acaacaaaat tcaggggcag ggtggttttt tatcatggag ttttttgtct tttaaaaaag
      901 aatttattga tagttgcttg aatgacaaaa aatgcatact gcatttaccc gaatttatat
      961 ttaatgataa caaggtacgc cttgttttag acaccgaccc agagcagagg gttaatgagg
     1021 tgaaaaattt cctcactgct ctttcagata gcatttgctc attatttatt gttaatagta
     1081 atatggcatc aatctccttg gggaatgaat ccttttcaac agatgacgac cttgagtatg
     1141 tttatttaat aaacactggc aatcattatg atgtttacct ccctcctgaa ctttttgctc
     1201 aggcttataa gttaaaaaat aaggaaatga atgcgcaact cgactattta aatcgttatg
     1261 caatttaatg gcaaaggcat atgctaaaaa ccattgttat tagtctcaca cttttttatt
     1321 ggtaaatatt gtctctgtat tggtaacgcc gcagatattc tgtttagcca caggtgcaat
     1381 tatcagcggc gtacgcgagg caggggctaa tcaggcatag tttgcgtcaa accttgcctg
     1441 tttttgaaga tgtatataga aaaacaggcg ttcaacaagc cattttgcga acctgttccc
     1501 ggaaaaaagt catatttctg tcacactctt tagtgattga taacaaaaga ggtgccagga
     1561 atgaacaaaa cgctaatcgc cgcagctgtg gcagggatag ttttactcgc ttcaaacgct
     1621 caggcacaaa ccgtaccgga aggctatcag ctacagcaag tgctca
//
LOCUS       DAJVSY010000302         1648 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.304, whole genome shotgun sequence.
ACCESSION   DAJVSY010000302 DAJVSY010000000
VERSION     DAJVSY010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1648
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.304"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..950)
                     /gene="corA"
                     /locus_tag="OQQ19_004223"
     CDS             complement(<1..950)
                     /gene="corA"
                     /locus_tag="OQQ19_004223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000947142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HCS1805607.1"
                     /translation="MLSAFQLENNRLTRLEVEESQPLVNAVWIDLVEPDDDERLRVQS
                     ELGQSLATRPELEDIEASARFFEDDDGLHIHSFFFFEDAEDHAGNSTVAFTIRDGRLF
                     TLRERELPAFRLYRMRARSQSMVDGNAYELLLDLFETKIEQLADEIENIYSDLEQLSR
                     VIMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQARE
                     ILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSY
                     GMNFEFMPELKWSFGYPGAIIFMILAGLAPYLYFKRKNWL"
     gene            1320..>1648
                     /locus_tag="OQQ19_004224"
     CDS             1320..>1648
                     /locus_tag="OQQ19_004224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805608.1"
                     /translation="MAHRLLIGKGMITLNLKRIFLTLTLLPLFSVAADDCALSDPTLT
                     VQAYTVNPQTERVKMYWQKANGEAWGTLHALLADINSQGQVQMAMNGGIYDESYAPLG
                     LYIENGQ"
BASE COUNT          426 a          427 c          412 g          383 t
ORIGIN      
        1 tacaaccagt tcttccgctt aaagtacaga tacggtgcca ggcccgcgag gatcataaag
       61 ataatcgcgc cagggtagcc gaagctccac ttcagttctg gcataaactc aaagttcatg
      121 ccatagctgg aagcaacgag cgtcggcggc aggaatacca cggataccac cgagaagatt
      181 ttgatgatgc ggttctgctc gatgttgata aaacccatcg ccgcctgcat caggaagttc
      241 accttctgga acagagattc gttatgcggc agcagggatt cgatatctcg caggatttca
      301 cgcgcctgct ccagttgtcc acccggtaag cgtgctttac gtaccaggaa gttgagcgcg
      361 cgctgggtat ccatcagaca caggcgtact ttccagccga tatcttccag ttccgccagc
      421 gtggagagcg cctcatcgta ctcatcgccc tgatgccctt ccataatcac ccggctcaac
      481 tgctccaggt cgctatagat attttcaatt tcatctgcca actgttcgat tttggtttcg
      541 aacagatcca gcagcagctc gtaggcgtta ccgtctacca tcgactggct acgggcacgc
      601 atacgataca gacgaaaagc gggcagttca cgctcacgca gagtaaacag acgaccatca
      661 cggatggtaa atgccacagt ggagttaccg gcgtgatctt ccgcatcttc aaagaagaag
      721 aaggagtgaa tatgcaggcc gtcgtcgtct tcaaagaaac gtgccgatgc ttcgatgtct
      781 tccagttccg ggcgggttgc caggctctgg ccaagttcag attgtacacg cagtcgctcg
      841 tcgtcgtccg gttcgacaag atcaatccat actgcattta caaggggttg tgactcttcg
      901 acttccagcc gggtcagtcg gttattttcc agttgaaatg cgctcagcat gaccgggact
      961 cccaatgctt aaaatatcgg acagttcggt gggcacacag aaacaaattg ggtttcagac
     1021 cattaaacag cctgactcag cgcgacggga aaaattgagg tcgctgacaa ccgctaaggc
     1081 tatcagcaaa aagggatagc cttaggagtt gatcctggat gacaggatag tgagccagta
     1141 tctactgggt gtgtccaagg cgaatgtcct cttagaatga tcgtgcgcgc atgttacgcc
     1201 agcaaaattt tgccgtcaac acgcaacaga acaccacaga acaatagttg aacttcgcgc
     1261 tttttggtac tcctcaaggt cgctaacagg ataaaaaaat cccacatcca ggacctataa
     1321 tggcgcatcg gctactcatt ggtaaaggaa tgatcacctt gaatctcaaa cggatttttc
     1381 tcaccctcac cttacttccc ttgttttctg ttgccgctga tgattgcgca ctctcagatc
     1441 cgacgctgac cgtacaggcg tataccgtta atcctcaaac agagcgggtg aaaatgtact
     1501 ggcaaaaagc caatggcgaa gcgtggggaa cgttacatgc tctgctggcg gatattaata
     1561 gtcagggtca ggtgcagatg gcgatgaacg gcggcatcta tgatgaaagc tatgcgccgc
     1621 tcggtttgta catcgaaaac ggtcagca
//
LOCUS       DAJVSY010000303         1621 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.307, whole genome shotgun sequence.
ACCESSION   DAJVSY010000303 DAJVSY010000000
VERSION     DAJVSY010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.307"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(1..1607)
                     /locus_tag="OQQ19_004225"
                     /pseudo
     CDS             complement(1..1607)
                     /locus_tag="OQQ19_004225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001441428.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
BASE COUNT          421 a          411 c          348 g          441 t
ORIGIN      
        1 caaaaaggca aacagatccg aagcgggata atctttttgg ggagaattgt tccagttagc
       61 aatatatccc gacagggggt tatacacctt agggttcatt tcaaaaggca atagcccttt
      121 ccagtcccat tttcccgtac caggaacggg taatcgcgga tcatggcctg attgacgatc
      181 tggataagca ccagtatgaa cataaccaat attgccgttt acatcagcat agtaccagtt
      241 gatggtcagt gcttgtttcg ctactcctgc caatttttgg ccttcatctg atgagtccag
      301 gccagcaaag acgccacctc tttaccatcc catgcgcggg atttagcgta agccgtttgt
      361 gtcgtctggt cagtttggag aatgttgcca tgcaccgtac gccagacagt aaaggtctct
      421 gcctgaccat ttttcaccgt aatggtttcc tcacggctta acattttcac ccacttacaa
      481 ttatataagt agtagcctgg tttctctgcc gacagccgtt cagcaaaaat atcgacatca
      541 tcgccgaaac ctgccgttga tccccaggaa atcacaccat tatgaccaaa aaccagccca
      601 ggataggcaa atggtgtatt gccagtgaca tcataaccag caccgtgcag accaatacca
      661 taagtatacg caggcgcata ccagccaaac tgcggaccat ttaccatgat tgctttcgca
      721 tcctgggctt tgcttttgcc gatcacccac atattgctgg tcgttggata ccccgccaga
      781 ccattggcac caccctgtgc aaattgtgca gcaatagttt cccggttctt ccctgctgtt
      841 aacgccagca gtgcgccatc cgcccctttt gctggtcggt caagcattgg tgcaggtaaa
      901 tcgtagcgtg gcaacagagc tgctgtttgc gagttttgct gattaaattt aagtgggtag
      961 ctactctctt gtacggcaat agtggttggc gctgatgggt ttaccagcca tttcaactga
     1021 ttaaataccg ccatgccttg tgatacacca tatttatctt ttaaagccgt tagcagtgcc
     1081 agattatcaa tttcgctagt gctatcagag aagcggtttg ccatggtgcc cacaaatatc
     1141 atcgcgacat caaacggttc ccagcgctta ggagtaaagc caaatgtatt aaactgtttt
     1201 ggtaagagcg tctctggatt ggtatttacc ttatcaatcc aggcattcat tccatcagcg
     1261 tagccttgca gaatggacat atcctctggg gaaagggcat caatttgcgc ccggatagca
     1321 tccggccagt agttacgacg gatatcttta tcaaatttca caaaatcttt gccaagcact
     1381 tccgcgacag tcccttgagt actgcgacgt gccatttcca tctgaaaaag gcgatcttgt
     1441 gctactacat agccatagcc ataaaatagg tgccatgtat cattggcata aatatgcggc
     1501 atgccgtatt catcgcgaac aatctttatc tcacttgacg actgctcagc cagtgcaggt
     1561 aagctccaat aatacatcag ggaagcagta acacagttca cgatcatacg atttctattt
     1621 t
//
LOCUS       DAJVSY010000304         1584 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.308, whole genome shotgun sequence.
ACCESSION   DAJVSY010000304 DAJVSY010000000
VERSION     DAJVSY010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.308"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(70..492)
                     /locus_tag="OQQ19_004226"
     CDS             complement(70..492)
                     /locus_tag="OQQ19_004226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805609.1"
                     /translation="MKIRHEHIESVLLALAAEKGQAWVANAITEEYLRQGGGELPLVP
                     GKDWNNQQNIYHRWLKGETKAQREKIQKLIPAVLAILPRELRHRLCIFDTLERRALLA
                     AQEALSTAIDAHDDAVQAVYRKAHFSGGGSSDDSVVVH"
     gene            complement(476..703)
                     /locus_tag="OQQ19_004227"
     CDS             complement(476..703)
                     /locus_tag="OQQ19_004227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1805610.1"
                     /translation="MLKIDAIAFFGSKTKLANAAGVRLASIAAWGELVPEGRAMRLQE
                     ASGGELQYDPKVYDEYRKAKRPGKVIHENQA"
     gene            780..1187
                     /locus_tag="OQQ19_004228"
     CDS             780..1187
                     /locus_tag="OQQ19_004228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1805611.1"
                     /translation="MKNETFGARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQ
                     PAGKRLFALSQALQCSPTWLLFGDEDKQPGEPIPDNQPAILTEDQKELLQLFDALPES
                     EQKALLSEMRARVENFNKLFEELLKARKRSANK"
     gene            1391..1543
                     /locus_tag="OQQ19_004229"
     CDS             1391..1543
                     /locus_tag="OQQ19_004229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000379550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1391 family protein"
                     /protein_id="HCS1805612.1"
                     /translation="MDTIDLGNNESLVCGVFPNQDGTFTAMTYTKSKTFKTEAGARRW
                     LAKNTS"
BASE COUNT          446 a          414 c          327 g          397 t
ORIGIN      
        1 ccgaaccttc ctccggatat aatctgtgat tccccaatca acagaaccag aggaggttcg
       61 gcataaacat caatgcacaa cgacagaatc gtcggacgac ccaccaccgc tgaaatgtgc
      121 tttccggtaa acggcctgaa ctgcgtcatc atgcgcatca attgccgtac tcaacgcttc
      181 ctgcgccgcc agtaatgcac ggcgttccag ggtatcgaag atacagagtc ggtgacgcag
      241 ctcacgcgga agaattgcca gaaccgcagg gatcagtttc tgaattttct ccctttgcgc
      301 tttcgtttca cctttcaacc aacggtgata gatattctgc tgattgttcc agtccttgcc
      361 tggtaccaga ggcaattcgc cgcccccctg ccgcagatat tcttcagtaa ttgcgttagc
      421 gacccacgcc tgcccttttt cggctgccag ggctaacagc actgattcga tgtgctcatg
      481 cctgattttc atgaatcacc ttcccaggtc gttttgcctt acgatattcg tcataaactt
      541 tggggtcgta ctgaagttcc ccgccagatg cctcttgcag gcgcatcgcg cggccttcag
      601 gaaccagttc cccccatgca gcaatgcttg ccagcctaac tcctgcggca ttggcaagct
      661 ttgttttgct gccaaaaaac gctatagcat caattttcaa catatcgagc tccttagatt
      721 ttcctaagga aactagatcg tagagaaacc taagtcaaga aagattagaa ttccctaata
      781 tgaaaaacga aaccttcggt gctcgcctct tacataggcg taaaaaatta aaactgtctc
      841 aggccgcatt aggtaagctg gtcaaagtgg ctcacgtaac aatttctcaa tgggaaagag
      901 atgaaacaca gccggcgggg aaaagattat tcgcactgag ccaagcgctt cagtgctcac
      961 cgacttggct tctttttggg gatgaagata aacaaccagg cgaaccgatc ccggataatc
     1021 agccagccat tctgacagaa gatcaaaaag agttacttca actgttcgac gcactgcctg
     1081 agtcagagca aaaggccctg ttgtcagaga tgcgtgctcg agttgaaaat ttcaacaaac
     1141 tttttgaaga actactcaaa gctcgcaaaa gaagcgcaaa caaataatcc ccttttttct
     1201 ccacaccctg taataaaaag cacaaacttt caaacacttg tgttttttac atcaaaaaaa
     1261 acttaggttt ttatacataa aatcttgact ccacgtctta ggttattcta aatttcattc
     1321 atcaagacac cgcacggtgt tctcagcaaa cagttccact accccggcgt taaggggaaa
     1381 tgaggtcagc atggatacta tcgatcttgg caacaacgaa tccctagtgt gtggcgtgtt
     1441 tcccaatcag gacggcacat tcaccgccat gacgtatacc aaaagcaaaa cgtttaaaac
     1501 cgaagctggc gcacgtcgct ggcttgccaa aaataccagc taatccattt attggattaa
     1561 ttcaatattc tcgctgtaga ggta
//
LOCUS       DAJVSY010000305         1581 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.309, whole genome shotgun sequence.
ACCESSION   DAJVSY010000305 DAJVSY010000000
VERSION     DAJVSY010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1581
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.309"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>1581
                     /locus_tag="OQQ19_004230"
     CDS             <1..>1581
                     /locus_tag="OQQ19_004230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000281525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HCS1805613.1"
                     /translation="IDGLPHVDFSRVDKFFTYADAFRESLPIISGELYFEAHQGCFTS
                     ESATKAHNRNMENKLHDAEFFTTITNNMTSILRSEFDEIWKEMLTLQFHDILPGSCIS
                     RVYLETEKEYIKLEAKTEKIISDTQSTLLSKIDTSSYKDPHILFNTTCFARNEWININ
                     NNWLKARVNSYGYAVIDPKNKIVNGLKAESRSIENNYIKLLFSENGDLISLYDKRYGK
                     EYITENMHSEIRAYHEDAGFFAAWDFASNYRDGESYVLLAEKMTTVISGPKTTMTLIY
                     HYNSSYLRFAFTLTQDSPRVDVQTFIDWHEPNVSLKVKFPVSVQTSLAQCQIQFGVID
                     RPTHSDDSFAFAKDEIPAHHWVDLSDRETGIALIAKNKYGYRVKDQTLDLTLLRSQHK
                     PGEIVKTDNYDNFLINNFADIGKQKFIFSLFPHHGDYRVGGVINQAYIMNHPLQVVPV
                     KPHPGELPPSLSFFAIDTNSVIIETIKLAEDGDGIIVRLYESHGLEISAMLSWVCNYH
                     YVQYVDLQENKLDDSFYCN"
BASE COUNT          505 a          301 c          283 g          492 t
ORIGIN      
        1 attgatggct tacctcatgt tgatttcagc cgtgttgata agttcttcac ttacgccgac
       61 gcttttcgcg aaagcttgcc cattatttca ggtgaacttt atttcgaggc tcatcaaggg
      121 tgctttacat cagagtcagc aactaaagct cataatcgaa atatggaaaa taaattacat
      181 gatgctgaat tttttacaac tattactaat aatatgacat caattcttcg cagtgagttt
      241 gatgaaatat ggaaagagat gctgaccttg caattccatg acatccttcc cggatcatgt
      301 atttcaagag tttatcttga aactgaaaag gaatatatta aactagaagc aaaaaccgag
      361 aaaattattt ctgatacgca gtctacttta ttaagtaaaa ttgatacttc ttcttataaa
      421 gatccgcaca ttttatttaa taccacctgt tttgctcgta acgaatggat caatataaac
      481 aacaactggc tcaaagcacg agtaaactct tatggttatg ctgtgattga tccaaagaat
      541 aagatcgtaa atggtctgaa ggcagaatct cgaagtattg aaaataatta cattaaactt
      601 cttttttcag aaaacggtga tttaatttcg ctatatgata aaagatatgg taaagaatac
      661 attactgaaa atatgcacag tgagatccgt gcataccacg aagatgcagg ttttttcgcg
      721 gcctgggatt ttgcttcaaa ttatcgtgat ggggaatcat atgttttact cgctgaaaaa
      781 atgacaactg taatcagcgg gcctaaaact acgatgacgc tgatttatca ctacaattcc
      841 tcttatcttc gcttcgcatt taccctgaca caggacagtc cacgcgttga tgtccaaact
      901 tttattgatt ggcacgaacc taatgtttct ctcaaagtca aattcccggt gtcagtacaa
      961 acatctcttg cacaatgtca aattcagttc ggtgtaattg acagaccaac gcatagcgat
     1021 gattcgttcg cttttgccaa agatgaaata ccagcacatc actgggtcga cctttctgat
     1081 cgagaaactg gcatagcttt aatagcaaaa aacaaatatg gctatcgtgt caaagaccag
     1141 acgcttgact taactttgct gcgttcgcag cataaacctg gggaaattgt taagacagac
     1201 aattatgata atttcctgat taataatttt gcagatattg gtaaacaaaa attcatattc
     1261 tccttatttc ctcatcatgg agattaccgt gtgggtggtg ttattaatca agcctatata
     1321 atgaatcatc ccttacaggt cgtccctgtc aaaccgcacc cgggtgaatt acccccttca
     1381 ctatcatttt ttgctatcga tactaacagc gttatcatcg aaacaataaa attagctgaa
     1441 gacggcgacg gtataatcgt aagattatat gagagtcatg gattagaaat ttcagccatg
     1501 ctttcgtggg tatgtaatta tcactacgtt caatatgtcg atcttcaaga aaataagtta
     1561 gatgacagtt tttattgcaa t
//
LOCUS       DAJVSY010000306         1575 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.310, whole genome shotgun sequence.
ACCESSION   DAJVSY010000306 DAJVSY010000000
VERSION     DAJVSY010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.310"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>1575
                     /locus_tag="OQQ19_004231"
     CDS             <1..>1575
                     /locus_tag="OQQ19_004231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000556401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HCS1805614.1"
                     /translation="NNGSQVNVTDSSLVSDTIGLTNGSSLNIGANGVVATDHLTVDSY
                     STVNLTESTGWNNYSNLYTNTITVTNGGVLDVNVDQFDTEAFRTDKLELTSGNIADHN
                     GNVISGVFDINSSDYVLNADLVNDRTWDTSKSNYGYGIVAMNSDGHLTINGNGDVDNG
                     TELDNSSVDNVVAATGNYKVRIDNATGAGTIADYKDKELIRVNDANTNATFSAANKAD
                     LGAYTYQAEQRGNTVVLQQMELTDYANMALSIPSANTNIWNLEQDTVGTRLTNSRHGL
                     ADNGGAWVSYFGGNFNGDNGTINYDQDVNGIMVGVDTKIDGNNAKWIVGAAAGFAKGD
                     MNDRSGQVDQDSQTAYIYSSAHFANNVFVDGSLSYSHFNNDLSATMSNGTYVDGSTNS
                     DAWGFGLKAGYDFKLGDAGYETPYGSVSGLFQSGDDYQLSNDMKVDGQSYDSMRYELG
                     VDAGYTFTYSEDQALTPYFKLAYVYDDSNNDNDVNGDSIDNGTEGSAVRVGLGTQFSF
                     TKNFSAYTDANYLGGG"
BASE COUNT          409 a          378 c          384 g          404 t
ORIGIN      
        1 aaataatggc tctcaggtaa atgttactga ttcctctctg gtatcagata ccattggttt
       61 aaccaacggt tcttcactga atattggtgc aaatggcgtg gttgctacag accacctgac
      121 tgttgatagc tacagtaccg ttaatttaac cgaatctacc ggttggaata attattctaa
      181 tctgtatacc aatactatca ctgtgactaa cggtggtgtg ctggatgtga atgttgatca
      241 gttcgatact gaagctttcc gtactgataa actggaactg accagcggca acattgctga
      301 ccataatggc aacgtaattt ctggtgtgtt cgacatcaac agcagcgatt acgttctgaa
      361 cgctgatctg gtgaacgacc gtacgtggga tacttccaag tctaactacg gttacggtat
      421 tgttgctatg aactctgatg gtcacctgac tatcaatggt aacggcgacg tagacaacgg
      481 tactgaactg gataacagct ctgttgataa cgttgttgct gcaaccggta actacaaagt
      541 tcgtatcgac aacgcaactg gcgctggcac tatcgctgat tacaaagata aagaacttat
      601 tcgggtaaac gacgctaaca ccaacgcgac cttctctgct gctaacaaag ctgacctggg
      661 tgcatacacc tatcaggctg aacagcgcgg taacaccgtt gttctgcaac agatggagct
      721 gaccgactac gctaacatgg cgctgagcat cccgtctgcg aacaccaata tctggaacct
      781 ggaacaagac accgttggta ctcgtctgac caactctcgt catggcctgg ctgataacgg
      841 cggcgcatgg gtaagctact tcggtggtaa cttcaacggc gacaacggca ccatcaacta
      901 tgatcaggat gttaacggca tcatggtcgg tgttgatacc aaaattgacg gtaacaacgc
      961 taagtggatc gtcggtgcgg ctgcaggctt cgctaaaggt gacatgaatg accgttctgg
     1021 tcaggtggat caagacagcc agactgccta catctactct tctgctcact tcgcgaacaa
     1081 cgtctttgtt gatggtagct tgagctactc tcacttcaac aacgacctgt ctgcaaccat
     1141 gagcaacggt acttacgttg acggtagcac caactctgac gcgtggggct tcggtttgaa
     1201 agccggttac gacttcaaac tgggtgatgc tggttacgag actccttacg gcagcgtttc
     1261 tggtctgttc cagtctggtg atgactacca gctgagcaac gacatgaaag ttgacggtca
     1321 gtcttacgac agcatgcgtt atgaactggg tgtagatgca ggttatacct tcacctacag
     1381 cgaagatcag gctctgactc cgtacttcaa actggcttac gtctacgacg actcaaacaa
     1441 cgataacgat gtgaacggtg attccatcga taacggtact gaagggtctg cggtacgtgt
     1501 tggtctgggt actcagttca gcttcaccaa gaacttcagc gcctataccg atgctaacta
     1561 cctcggtggt ggtga
//
LOCUS       DAJVSY010000307         1575 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.311, whole genome shotgun sequence.
ACCESSION   DAJVSY010000307 DAJVSY010000000
VERSION     DAJVSY010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.311"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..90
                     /locus_tag="OQQ19_004232"
     CDS             <1..90
                     /locus_tag="OQQ19_004232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaK family small membrane protein"
                     /protein_id="HCS1805615.1"
                     /translation="GIIFPVVIFITAVVFLAWFFIGGYAAPGA"
     gene            93..167
                     /gene="yoaJ"
                     /locus_tag="OQQ19_004233"
     CDS             93..167
                     /gene="yoaJ"
                     /locus_tag="OQQ19_004233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YoaJ"
                     /protein_id="HCS1805616.1"
                     /translation="MKKTTIIMMGVAIIVVLGTELGWW"
     gene            complement(226..474)
                     /locus_tag="OQQ19_004234"
     CDS             complement(226..474)
                     /locus_tag="OQQ19_004234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HCS1805617.1"
                     /translation="MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTILLGIVGAVVGG
                     WISTLFGFGKVDGFNFGSFVVAVIGAIVVLFIYRKIKS"
     gene            complement(622..804)
                     /locus_tag="OQQ19_004235"
     CDS             complement(622..804)
                     /locus_tag="OQQ19_004235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1869 domain-containing protein"
                     /protein_id="HCS1805618.1"
                     /translation="MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVN
                     TVRSYDTENEHDVCGW"
     gene            complement(808..1168)
                     /gene="yeaR"
                     /locus_tag="OQQ19_004236"
                     /pseudo
     CDS             complement(808..1168)
                     /gene="yeaR"
                     /locus_tag="OQQ19_004236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310533.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1971 domain-containing protein"
     gene            complement(1341..>1575)
                     /locus_tag="OQQ19_004237"
     CDS             complement(1341..>1575)
                     /locus_tag="OQQ19_004237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HCS1805619.1"
                     /translation="SFFVQFIDVNAPHTGISFFILATTLELVSFCYLSFLIISGAFVT
                     QYIRTKKKLAKVGNSLIGLMFVGFAARLATLQS"
BASE COUNT          433 a          375 c          350 g          417 t
ORIGIN      
        1 ggtattattt ttccggttgt aatctttatt acagcggtcg tatttttagc atggtttttt
       61 attggcggct atgctgcccc gggggcataa agatgaaaaa aacaacgatt attatgatgg
      121 gtgtggcgat tattgtcgta ctcggcactg agctgggatg gtggtaacgt cacctctaaa
      181 aaatagcaaa ggctgcctgt gtgcagcctt tgtgcaattt aagcgttaac ttttaatctt
      241 cctgtagata aatagcacga caatcgcacc aataacggca accacgaagc tgccaaaatt
      301 gaagccatcg actttaccaa agccaaacag cgtgctgatc catccgccga ctacggcacc
      361 gactatcccc agcaggatag tcataaagaa tccaccacca tctttacctg gcatgatcca
      421 cttcgccaga ataccggcaa taagcccaaa aataatccat gacagaatgc ccattgtttc
      481 ctcacttatc tgttttgcat tagcgggtta gtcgctgata aaaagcatag cacaacatcg
      541 ggagggcaag atttgtgacg agcatcacgg aggatttttt tgcgatggcg cagaaattgc
      601 gccatcaacg atcagtgata attaccaacc acaaacatca tgttcgtttt ccgtgtcata
      661 agaacgcacg gtattcacca gatcttttat cacttcagcc gccacttctg gcaccagcaa
      721 agtcatcggc gtctctgttt cataatcgac agaaacgcca ttactgttat tggtgacggt
      781 cacggtatac gttgctttgc ccatgattca tttcccgtta tgaatgactt tccgttgttg
      841 cgcaccttcc atcaggactt caggagccac gaagaagtca atgttgacat aagtatcgtc
      901 agtcatggct tcaatgttgt gccacttttc tggagggaac accgcaaact gccccgcttc
      961 gataaggatc acctgatcag gctctgcact gtgttcatca gcgtagccga gatatttgac
     1021 cgccccatgc ataacggaaa ggcgtgggta acccccctgg cgcgttcctt tatcaagatg
     1081 acgttcgaat tattccggca ggcgcagttt gtttattcca gaaaggcgtt gagcgcgtat
     1141 gaatataatt ctgtgggatt tgcagcatcc ttttccctcc ttcggtgaat gcgctgaaaa
     1201 cggtttattc cagccgtttc agggtacgcc tgataatttg cattttaaat accatttatt
     1261 ggttactttt tagcaccata tcagagaaaa atcagggagg attacaagtg ggaagcccgc
     1321 gacaacgcgg gctgaatgta tcaggattgc agcgtcgcca gtcgggcggc gaaacccacg
     1381 aacatcaaac caatcagtga gttgccaact ttagccagtt tctttttggt acgtatgtac
     1441 tgcgtgacaa aagcaccaga aataatcagg aagctcaaat agcagaaact caccagttcc
     1501 agcgtcgtcg ccagaataaa gaatgaaatt cccgtatgtg gggcattaac atcgataaac
     1561 tgtacgaaaa acgac
//
LOCUS       DAJVSY010000308         1551 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.312, whole genome shotgun sequence.
ACCESSION   DAJVSY010000308 DAJVSY010000000
VERSION     DAJVSY010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1551
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.312"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..409
                     /gene="bluF"
                     /locus_tag="OQQ19_004238"
     CDS             <1..409
                     /gene="bluF"
                     /locus_tag="OQQ19_004238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="blue light-responsive regulator BluF"
                     /protein_id="HCS1805620.1"
                     /translation="PEQIIVEFTESEVISRFDEFAEAIKSLKAAGISVAIDHFGAGFA
                     GLLLLSRFQPDRIKISQELITNVHKSGPRQAIIQAIIKCCTSLEIQVSAMGVATPEEW
                     MWLESAGIEMFQGDLFAKAKLNGIPSIAWPEKK"
     gene            614..1345
                     /gene="bluR"
                     /locus_tag="OQQ19_004239"
     CDS             614..1345
                     /gene="bluR"
                     /locus_tag="OQQ19_004239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor BluR"
                     /protein_id="HCS1805621.1"
                     /translation="MAYYSIGDVAERCGINPVTLRAWQRRYGLLKPQRSEGGHRLFDE
                     EDIQRIEEIKRWISNGVPVGKVKALLETTSQDTEDDWSRLQEEMMSILRMANPAKLRA
                     RIISLGREYPVDQLINHVYLPVRQRLVLDHNTSRIMSSMFDGALIEYAATSLFEMRRK
                     PGKEAILMAWNVEERARLWLEAWRLSLSGWHISVLADPIESPRPELFPTQTLIVWTGM
                     APTRRQNELLQHWGEQGYKVIFHAP"
BASE COUNT          448 a          335 c          354 g          414 t
ORIGIN      
        1 gcctgaacaa atcatcgttg aatttactga aagtgaagtc atatctcggt ttgatgagtt
       61 tgccgaagcg attaaatcgc taaaggctgc tggtatcagt gtagcaattg atcattttgg
      121 cgcaggtttt gctggtttgt tactcctgtc acgcttccag cctgacagaa ttaaaatcag
      181 tcaggaattg attaccaatg ttcataaaag tgggccacgg caggcaatta ttcaggcgat
      241 cataaaatgc tgtacatcac ttgaaattca agtcagtgct atgggcgtgg caacaccaga
      301 agagtggatg tggcttgaat ccgcaggaat tgagatgttt cagggagatc tgtttgctaa
      361 agctaaattg aatggtatcc cttccatagc gtggccagag aaaaaataat tttcagcaca
      421 ttctttcaca tgatttcagt aaatcatcgt gaaaatgaat acgttacgtt taaatttaat
      481 ccacattaaa aataatgttt catccaattt agctgaaatc ttatttatac tttgtacaat
      541 tttagcgtat attgtacaaa gtattattgg gtcgtgtaca ggcgacggag atttgtgacc
      601 gcaaggagga attgtggctt attacagcat tggtgatgtt gctgaacgtt gcgggattaa
      661 tcctgtcact ctccgggcct ggcaacgccg ctacggtttg ttaaaaccac agcgcagtga
      721 aggcggacac cgactctttg atgaagaaga catacaacgc atcgaagaga tcaagcgttg
      781 gataagtaat ggcgtccctg taggcaaagt taaagcatta ctggaaacca ccagccagga
      841 tacggaagat gactggagcc gcctgcaaga agagatgatg tcaattcttc gcatggctaa
      901 tcctgccaaa ctacgcgcga gaattatttc actgggtcga gagtacccag tagatcaatt
      961 gattaatcat gtttaccttc ctgttcgcca gcgtctcgtg cttgatcaca acacctcccg
     1021 cattatgagc agtatgtttg acggcgcatt aattgaatac gcagcaacct cgcttttcga
     1081 aatgcgccgt aagcccggta aagaagccat tctgatggcg tggaatgttg aagagagagc
     1141 acgattgtgg ctggaagcat ggcgtttatc attgtcagga tggcacattt ctgttcttgc
     1201 tgatcccatt gaatcgccgc gcccggaact gttcccgacg caaacattga ttgtctggac
     1261 aggcatggca ccaacgagaa ggcaaaacga acttttacaa cactggggtg agcaaggtta
     1321 taaagtcatc tttcatgccc cctaatttca cctttatccc gccccttaga cagaatgtta
     1381 taatctgaac ccacaacagc atttgtaccg gagctgatcc gttgcaaaat gctcaccggg
     1441 agaattcagg taatccctct atcacactct gtacatatca cagccaaagg acagaccaga
     1501 ttgaagtggt aaaaccgatc gtgcacacta cgcagtctca caactaacaa g
//
LOCUS       DAJVSY010000309         1549 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.313, whole genome shotgun sequence.
ACCESSION   DAJVSY010000309 DAJVSY010000000
VERSION     DAJVSY010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.313"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(328..453)
                     /locus_tag="OQQ19_004240"
     CDS             complement(328..453)
                     /locus_tag="OQQ19_004240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001431667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HCS1805622.1"
                     /translation="MWLPVLFRFLVDSLATLGHRLAASGITSRMLSVIPVLFFWG"
     gene            956..1432
                     /locus_tag="OQQ19_004241"
     CDS             956..1432
                     /locus_tag="OQQ19_004241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000469298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1805623.1"
                     /translation="MFIDSEKRLKQLSDEAKKNTEDLEEAKKNSRFTQVSPKGWERVR
                     ELLKDSQGISALKLYSFLAEHIDPTCGAVVADQQFLAEKLGVSRSTIIRWLNYLESKN
                     ALVRIPVAGKVCAYALDPHEVWKGYNTTKNHAAFVTKTLVNKDGDIQRRIMAMFSN"
BASE COUNT          404 a          381 c          405 g          359 t
ORIGIN      
        1 aaaaaaaacc gagccgccac ggttccggta gcgctcaagg cgcggccgga aaccgtctgg
       61 ggagaacccc agacccccat cgctgcaaca ccgacggtct acgaccacct accaaccgca
      121 tggctgcctg ttccgtgcaa atgggctttg cagggggctg gcgcggttcc tggcgacctg
      181 aaagcccctg gttaggggta tcggcgcgct tgacctcctg agagcctctg taagcgtttt
      241 tcgcgccttc catgccctgg cgggcatcta aaacccgttt cgtgcgtctg agagcttttg
      301 agcgcgtttg aggggctatc tggcgactca tccccaaaag aacaacaccg ggatcaccga
      361 caacatgcga gaggtgatcc cgctcgccgc aagtcgatga ccgagcgtag cgagcgaatc
      421 gacgaggaag cggaagagaa ctggaagcca cattgagcac ttacgcactg atgcggggtg
      481 tcggggtgaa gccctgacca agtggtaatc gtatcggcgt gcatgcgcgg ttatacgatt
      541 acacatcctg tcccgatttc tgaggcgttt taacggtgaa cggacggcaa aaacacgatg
      601 gagctgttga acgtgaaaac cacgaaatct ggcaaaaatc acggctggcg aggcttgcat
      661 aggagtaagc cagtatacac tccgctatcg ctacgtgact gggtcagggc ttcgccccga
      721 cacccccaaa gggcgttgcg ttgcacgcaa cacccttacc tagaatagat cttttacgcc
      781 gatttgtaag tggttgtttt tttagtgtgt tttttattta cctgtcgcat ccaggatgac
      841 acaacgttgt cgcatccagg atgcgacaac acgcaacaag gtgttgcata gatgtgtcat
      901 gatggcttag atttgaacca acgttagtgc atgggatttt cagagggaaa aaatcatgtt
      961 tattgattca gaaaaacgac tgaaacaact ttcagatgag gcaaagaaaa acaccgagga
     1021 tctcgaagaa gcaaagaaaa attcaaggtt tacacaagta tccccaaaag gttgggaacg
     1081 tgttcgagag ctgctgaagg atagccaagg catatcagca ctgaagctgt actcattttt
     1141 agcggagcat atcgatccta cgtgtggcgc tgtcgttgcg gatcagcaat ttctagctga
     1201 aaaacttgga gttagcagaa gcacaattat tcggtggctc aattacttag aatcaaaaaa
     1261 tgcattagtt agaatccccg ttgctggtaa ggtttgtgcg tatgccctcg atccacatga
     1321 agtctggaag ggatacaaca ctacgaaaaa ccatgcagcg tttgtcacta aaacactggt
     1381 caacaaagac ggtgatattc agcgccgaat catggccatg ttttcaaatt gagctagcgg
     1441 caggcggaca atcaggggct acgtgttaac gttctgacca tgattgtcta tcctgcattg
     1501 ctcttttgcc gcctcaaaat cctttgcgtg tttttgctcc ccgttctcc
//
LOCUS       DAJVSY010000310         1522 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.314, whole genome shotgun sequence.
ACCESSION   DAJVSY010000310 DAJVSY010000000
VERSION     DAJVSY010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.314"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(1..1386)
                     /locus_tag="OQQ19_004242"
                     /pseudo
     CDS             complement(1..1386)
                     /locus_tag="OQQ19_004242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313048.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SopA family protein"
BASE COUNT          521 a          266 c          224 g          511 t
ORIGIN      
        1 agcgctggga gcttaccacc ataacaggcc catcatcgac agaggagaac aggataaata
       61 tattatcgtt tcgtgttaat ttattagtgt taaaggttct taacttttct tcagtttcta
      121 taaatatagg tgaaacatca tcactacgaa tccactcttt ataaagatac caggcatttg
      181 ctttgatcat atcatccgtt gatcgtaagg cctgatcgat aagttggata aaaaaattgt
      241 tatttttatc aatcagccct ttattcatat taaacctgtt aataaaatgg atcatctgtt
      301 gggtatcgaa atccaccttg ctgaatcgat gttgacgcat aaaatcatcg aacttgttat
      361 cttcaccaga atggatataa ctgcgtataa ttggatcttt tatataagga caatggctaa
      421 atgttttctt catattctca ataaagtttt tattaacaat attaagaatt tttaattgca
      481 taaccagttt tactgccaga acggatttca atatcattgc attatctggc aatgtatcaa
      541 tcatttttat aatgttattg atataaccat cgagatcttc attcccaaat atatctgaat
      601 aatcaatagt taattccaat tgttctgtaa tgcaatcttt aaaattccct gtcgacattc
      661 gcacatgatc aaacataaca gctgtcaaat tcgatttaat aaatgatatt tctttggcag
      721 acagaaactc tgctctggtg aagtgcgaag cgtaaagata acaattatcg aagtttgaat
      781 ttctaatctg acattcgcga aaattactat gaccaagttg actctgcgag aagtcaactg
      841 tatcaagaat atcttggcta aaatcaacac attcgccact cgttttgaga aaaatcacat
      901 tgtgtaaacg tcgacattta aatatgacat tatcaactgt tgccttagta aaattgcaat
      961 tctcaatttc tttacattcg aaagttacat gttgtagatt tgatgataaa aaagacacct
     1021 tagaaataac gtcaccttta aaatgacaat ttgttacatc aaaatcagac aggtcgatat
     1081 acccctgcga atctttatcc atcagaaaat tacaagcgca ttctattttt tcatttctgt
     1141 agaattttac acttatagta tcattactaa ttgagacttc acgtaacata tttattgcat
     1201 gattttttcg ttccgttgtt ttatatttaa aaatatatca ctgatataaa taaagttatc
     1261 tctgtttaaa cctgtcaccc cattgaaatt acgtagtaaa tcaagatcta ctatattatt
     1321 tccttgaacc acatcatgtt tcatcaaaga gttattgcca ccagaatttg tgatatgacc
     1381 tatcataaaa cctctgtaat acagaaataa aataacctgg aaaagtagcc tgagcgtcca
     1441 gacactaccg gcgaaaggaa aagaatctct gataaggcat tgagataatg gacattctta
     1501 gtgaagaaga agtgaagtac ta
//
LOCUS       DAJVSY010000311         1516 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.315, whole genome shotgun sequence.
ACCESSION   DAJVSY010000311 DAJVSY010000000
VERSION     DAJVSY010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.315"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>1516
                     /locus_tag="OQQ19_004243"
     CDS             <1..>1516
                     /locus_tag="OQQ19_004243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HCS1805624.1"
                     /translation="HPETEALLWQHETRHAYNAQGLANRCIPDSLPAVEWLTYGSGWL
                     AGMKLGDTPLVDFTRDRLHRETLRRFGRYELSTAYTPAGQLQSQHLNSLQYDRDYTWN
                     DNGELIRISSPRQTRSYSYSTTGRLTGVHTTAANLDIRILYATDPAGNRLPDPELHPD
                     STLSMWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGGIRTDDERTHWYHYDSQHRLV
                     HYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPEVTWYGWDGDRL
                     TTIQNDRTRIQTVYQPGSFTPLIRVETATGELAKTQRRSLADALQQSGGEDGGSVVFP
                     PVLVQMLDRLESEILADRVSEESRRWLASCGLTVAQMKNQMDPVYTPARKIHLYHCDH
                     RGLPLVLISTEGATEWCAEYDEWGNLLNEENPHHLQQLIRLPGQQYDEESGLYYNRHR
                     YYDPLQGRYITQDPIGLKGGWNFYQYPLSPVNSMDPLGLYEFKSKNIDDIGIFAL"
BASE COUNT          356 a          453 c          454 g          253 t
ORIGIN      
        1 cacccggaga cggaagcact gctctggcag catgagacca gacatgcgta caacgcgcag
       61 ggactggcga accgctgtat accggacagc ctgcccgccg tggaatggct gacctacggc
      121 agcggctggc tggcaggtat gaagctcggc gacacaccgc tggtggattt cacccgcgac
      181 cgcctgcacc gggaaacgct gcgccgcttc ggccgttatg aactctccac cgcttacacc
      241 cctgccgggc agttacagag ccagcacctg aacagcctgc agtatgaccg cgattacacc
      301 tggaacgaca acggcgaact catccgcatc agcagcccgc gccagacccg gagttacagc
      361 tacagcacca ccggcaggct gaccggcgtt cacaccaccg cagcgaacct tgatatccgc
      421 atcctgtatg ccacagaccc ggcaggtaac cgcctgcccg acccggagct gcacccggac
      481 agcaccctca gcatgtggcc ggataaccgt atcgcccgtg acgcgcacta tctttaccgg
      541 tatgaccgtc acggcaggct gacagagaaa accgacctca tcccggaagg gggtatccgc
      601 acggatgatg agcgcaccca ctggtaccat tacgacagtc agcaccggct ggtgcactac
      661 acgcggacac aatatgcaga gccgctggtc gaaagtcgct atctttacga cccgctgggc
      721 cgcagggtgg caaaacgggt atggcggcgt gaacgggacc tgacgggctg gatgtcgctg
      781 tcacggaaac cggaagtgac ctggtacggc tgggacggcg accggctgac cacaatacag
      841 aacgacagaa cccgcatcca gacggtttat cagccgggaa gcttcacgcc actcatcaga
      901 gttgaaaccg ccaccggtga gctggcgaaa acgcagcgcc gcagcctggc ggatgccctt
      961 cagcagtccg gcggcgaaga cggtggcagt gtggtgttcc cgccggtgct ggtgcagatg
     1021 ctcgaccggc tggaaagtga aatcctggct gaccgggtga gtgaggaaag ccgccgctgg
     1081 ctggcatcgt gcggcctgac cgtggcgcag atgaaaaacc agatggaccc ggtgtacacg
     1141 ccggcgcgaa aaattcacct gtaccactgc gaccatcgcg gcctgccgct ggtgcttatc
     1201 agcacggaag gggcaacaga atggtgcgca gaatacgatg agtggggcaa cctgctgaat
     1261 gaagagaacc cgcatcatct gcagcagctc attcgcctgc cggggcagca gtatgatgag
     1321 gagtccggcc tgtattacaa ccgccaccgc tattatgacc cgctgcaggg gcgatatatc
     1381 actcaggatc cgattgggct gaagggggga tggaattttt atcagtatcc gctgagcccg
     1441 gtgaatagca tggatccatt aggattatat gaatttaaat caaaaaatat agatgatatt
     1501 ggaatatttg cattgg
//
LOCUS       DAJVSY010000312         1496 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.316, whole genome shotgun sequence.
ACCESSION   DAJVSY010000312 DAJVSY010000000
VERSION     DAJVSY010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1496
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.316"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..1494
                     /gene="pdeB"
                     /locus_tag="OQQ19_004244"
     CDS             <1..1494
                     /gene="pdeB"
                     /locus_tag="OQQ19_004244"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308537.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase
                     PdeB"
                     /protein_id="HCS1805625.1"
                     /translation="LPVGLSIWLAHQQVETSFIEELDTYSSRVAIRANKVATQGKDAL
                     QELERWQGAACSEAHLMEMRRVSYSYRYIQEVVYIDNNVPQCSSLEHESPPDTFPEPG
                     KISKDGYRVWLTSHNDLGIIRYMVAMGTAHYVVMIDPASFIDVIPYSSWQIDAAIIGN
                     AHNVVITSSDEIAQGIITRLQKTPGEHIENNGIIYDILPFPEMNISIITWASTKMLQK
                     GWHRQVFIWLPLGLVIGLLAAMFVLRILRRIQSPHHRLQDAIENRDICVHYQPIVSLA
                     NGKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSEPLTLLIIRSVFEDMGDWLRQH
                     PQQHISINLESTVLTSEKIPQLLREMINHYQVNPRQIALELTEREFADPKTSAPIISR
                     YREAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFVDALEYKNVTPHIIEMAKTLK
                     LKMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKEDFLRWAEQHL"
BASE COUNT          396 a          351 c          367 g          382 t
ORIGIN      
        1 ctgcctgtcg gcttaagcat ctggctggcc catcagcagg tagaaacatc gtttattgaa
       61 gagctggata cctattcctc ccgcgtcgct attcgggcca ataaggtggc gacacaaggg
      121 aaagatgcgc tgcaagagct ggaaagatgg caaggcgctg cctgtagcga agcccatctc
      181 atggaaatgc gtcgggtatc ttacagttat cgctatattc aggaagtggt ttatatcgat
      241 aacaacgttc cccagtgttc gtctctggag catgaaagtc cgcccgatac cttccccgag
      301 ccaggtaaaa tttcgaaaga tggttatcgt gtctggttaa catcgcataa cgatttaggc
      361 attatccgtt acatggtcgc catgggaacg gcacattatg tcgtcatgat cgaccccgct
      421 tcctttattg atgtcattcc ctatagctca tggcaaattg atgccgccat tattggcaat
      481 gcccataacg ttgtcataac cagcagcgat gaaattgctc agggaattat taccaggcta
      541 caaaaaacac ccggtgagca tatcgaaaat aatggaatca tttacgatat cctgcccttc
      601 ccggagatga atatttcgat catcacctgg gcttcaacga aaatgttgca gaaaggctgg
      661 catcggcaag tctttatttg gttaccgctc gggttggtga ttggcctgct ggcagcgatg
      721 tttgtgctgc gtattttgcg ccgtatccag tcaccgcatc atcggctgca ggatgctatc
      781 gaaaatcgtg atatttgcgt gcactatcag ccgattgtct ccttagccaa tggcaaaatt
      841 gtcggtgctg aggcactggc gcgctggccg cagacagacg gtagttggtt gtcaccagat
      901 agttttattc cgctggcaca gcaaacaggc ctttctgagc cattgacgct actgattata
      961 agaagcgtct ttgaagatat gggcgactgg ctgcgtcagc atccacagca gcatatttcg
     1021 atcaatcttg aatccaccgt gctcacctcg gaaaaaatcc cgcaattgct gcgtgaaatg
     1081 atcaatcact atcaggttaa tcccagacag atcgcgcttg aactcactga acgcgagttt
     1141 gccgatccga aaaccagcgc cccgataatt tctcgctacc gggaggcggg ccatgaaatt
     1201 tatcttgatg attttggtac gggatattca agtttaagtt atttacagga tctggatgtc
     1261 gacattctga agatcgataa atctttcgtt gatgcgctgg aatataaaaa tgtcacgccg
     1321 catatcatcg aaatggcaaa aacactgaaa ctgaaaatgg tagcggaggg aatcgaaacc
     1381 agtaaacaag aagagtggct acgccagcat ggcgtgcact acggtcaggg ctggctctac
     1441 agcaaggcat taccgaaaga agatttctta cgctgggccg agcaacattt gtgaat
//
LOCUS       DAJVSY010000313         1490 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.317, whole genome shotgun sequence.
ACCESSION   DAJVSY010000313 DAJVSY010000000
VERSION     DAJVSY010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1490)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1490)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1490
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.317"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..695)
                     /locus_tag="OQQ19_004245"
     CDS             complement(<1..695)
                     /locus_tag="OQQ19_004245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005105549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HCS1805626.1"
                     /translation="MLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGE
                     NRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALK
                     ELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMS
                     LELLDAARNALEVIPDFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQL
                     SPRIMQTLLQQTA"
     gene            complement(1011..>1490)
                     /locus_tag="OQQ19_004246"
     CDS             complement(1011..>1490)
                     /locus_tag="OQQ19_004246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HCS1805627.1"
                     /translation="TGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHKISHDV
                     FETYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATILGDGV
                     VHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFGNVKTKVQGTVVMFSASGKK"
BASE COUNT          436 a          264 c          313 g          477 t
ORIGIN      
        1 tgggcggttt gttgtaacaa agtttgcatt attctgggag atagttgatt ttctctaaga
       61 ttgacaacgc tatcagaact gaggccaagt atgctttccg gaattgccgt gatccggttc
      121 tgattaagcc agaatattct tataatatga tcatctcttt ctggaaaatc tggtattact
      181 tccaaagcat ttctggctgc atcaagtaat tccaatgaca ttggtaacct cggaagtaca
      241 gacaggtgat tgtcacttac gttaatatat tctagtgacg caggtaattc aggaagtgcg
      301 aacaaatggt tatcactcac atttatatat tccagcgaca ctggtaattc aggaagtgca
      361 gataattgat tactgcttgc attcagttct ttcaatgccc ttggtagctc ggggagcatt
      421 gatagttggt tattgcttac attaatttca tcaagattgt caggcaatcg tggtagagat
      481 ctgagaccta aacaagataa gtccaacgat gtttcactgt tttccagaca taattggagc
      541 cgggtaaaag cagtttccct gttttctccg gaaatgctgt ttttagtcca ttcaacccat
      601 tcggagagat aattattgtg aacattgtcg attgatgtag ttctgtaaaa agagacgttt
      661 ccagtggata gggggggatt atttacagga agcataataa cctcgcagaa ggatatcctg
      721 ataaaatgtg atactgggaa ataataagct aaaataaaat gtttcaggat tgaaatttat
      781 tgttttcatt ttaaggaagt gatgttgatt taactgtaaa aaaacgatac tattttctta
      841 gatggtaaat gtctcgcctg tgctatattt tgtttttcgg ttagttaaat atcgtacatt
      901 catatttgaa tgttctgccg gaatgcatta tcaatagagg taaagtcgca accccaaatc
      961 gtaaaggaaa ccgtagcacg tcttaagcaa gaacgtgctg cggttggatg ctattttttc
     1021 cctgaagcag aaaacattac tacagtacct tgaaccttgg ttttaacatt cccgaaatgc
     1081 tctgagagta tatgtgttaa gccttcttcg gaatcttttg tgtttgaaaa gatgcctttc
     1141 tgattgtaaa tgcgcatcag tttttgaccg aagctattgt gcacaactcc atcgccaaga
     1201 attgtggctc cgtatagagt tccatcatca gttaaggcct gcgccgcatt gcgtattaca
     1261 cagctttttg tagatatatt tccaggcagg cagtgaagaa ggtaaaacat ggaaatggaa
     1321 tcaaattgac catgtaacgc cgcgggataa gtttcaaaaa catcatggct aattttatgt
     1381 ttaatttttg attccccagc ccttgtagat gccgcgttca ggctagcttc gttcaaatcc
     1441 attaaagata tcagactact ctcaggtacg tgagtaaggt aaaacccagt
//
LOCUS       DAJVSY010000314         1459 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.318, whole genome shotgun sequence.
ACCESSION   DAJVSY010000314 DAJVSY010000000
VERSION     DAJVSY010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1459
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.318"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..730)
                     /gene="pdeC"
                     /locus_tag="OQQ19_004247"
     CDS             complement(<1..730)
                     /gene="pdeC"
                     /locus_tag="OQQ19_004247"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-di-GMP phosphodiesterase PdeC"
                     /protein_id="HCS1805628.1"
                     /translation="MSHRARHQLLALPGIIFLVLFPIILSLWIAFLWAKSEVNNQLRT
                     FAQLALDKSELVIRQADLVSDAAERYQGQVCTPAHQKRMLNIIRGYLYINELIYARDN
                     HFLCSSLIAPVNGYTIAPADYKREPNVSIYYYRDTPFFSGYKMTYMQRGNYVAVINPL
                     FWSEVMSDDPTLQWGVYDTVTKTFFSLSKEASAATFSPLIHLKDLTVQRNGYLYATVY
                     STKRPIAAIVATSYQRLITHFYNHL"
     gene            1160..1441
                     /locus_tag="OQQ19_004248"
     CDS             1160..1441
                     /locus_tag="OQQ19_004248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313069.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjcB family protein"
                     /protein_id="HCS1805629.1"
                     /translation="MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISS
                     GLGVVSACWFAMGLLGITMADITAIWHNIESVMIEEMNQTPPQWPMILT"
BASE COUNT          422 a          321 c          323 g          393 t
ORIGIN      
        1 taagatgatt ataaaaatgg gttataagac gttgatatga agtcgcaaca atggctgcaa
       61 ttgggcgttt tgtcgaataa actgtcgcat ataaatagcc atttctttgt acggttaaat
      121 ccttcaaatg aatcagcgga gaaaacgttg ctgccgaggc ctctttgctt aacgagaaaa
      181 aggttttcgt caccgtatca tacacacccc attgcaatgt cggatcatca gacatcactt
      241 cactccagaa gagagggttg ataaccgcca cataatttcc ccgctgcata taggtcattt
      301 tatagccaga gaaaaaaggc gtatcgcggt aataatagat agaaacgtta ggttcacgct
      361 tataatcggc cggtgcaatc gtatagccgt ttacaggcgc tatcagcgat gagcataaaa
      421 aatggttatc acgggcatag atcaattcat taatataaag atagccacga ataatattca
      481 acattcgctt ttgatgggct ggagtgcaaa cttgcccctg atagcgttca gctgcatcgc
      541 tcactaaatc tgcctggcga ataaccagct cggatttatc cagtgccagt tgagcaaagg
      601 ttcggagctg attattcact tctgattttg cccaaaggaa ggcaatccat agcgaaagaa
      661 tgatgggaaa gagaactaaa aagataatgc ccggcaacgc cagtaattgg tgtcgtgcac
      721 gatgactcat tgctatcaat ttcctgcctg tttatacccg gccattgtaa ggtgaaaacc
      781 ctgggtaccg acgtctttag ataaatctta cggtataaat agcacttttg cctgatttga
      841 aattgatacc tttctaatcg tcacctggat gaaaataatt cattgatatt caaaattaat
      901 ttcctacagg aatgcagagg cggcgggaag atatgccctt aatgccactg aaaaaccaca
      961 taatctgtac agcaataaaa gtcacggcct aatatggcta acaaacaatc aattgtgata
     1021 tatttcacaa aattaatgaa acaaacagag tgtttcattt ttgtgttctg caagccccgc
     1081 gatagccaga gtgtaccacg cctcccgtga acaacgccgc gctgtccagg gcatcggctc
     1141 ttttcagagg aattgtttga tggctaccct caccactggc gtggttcttc ttcgctggca
     1201 acttcttagt gccgtaatga tgtttctggc cagcacactc aacatccgtt ttcgtcggtc
     1261 tgattatgtc gggcttgcgg tgatcagcag cggtctgggc gttgtttccg cctgttggtt
     1321 cgcaatgggg ttgcttggca tcacaatggc ggacatcacc gctatctggc acaacatcga
     1381 gtcggtgatg atagaagaga tgaatcagac accgccacaa tggccaatga ttttgacctg
     1441 atacgtagaa gcctccata
//
LOCUS       DAJVSY010000315         1415 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.319, whole genome shotgun sequence.
ACCESSION   DAJVSY010000315 DAJVSY010000000
VERSION     DAJVSY010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1415)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1415)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1415
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.319"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            45..323
                     /locus_tag="OQQ19_004249"
     CDS             45..323
                     /locus_tag="OQQ19_004249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005028610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2612 domain-containing protein"
                     /protein_id="HCS1805630.1"
                     /translation="MSDAVYRRLILMKAMSNITDCSVPDINRMLRFMFGKKRRAYVLN
                     NGGLRMSYIFESALSLAELAIIQSSGALPSPPGVYVSVVLKESRNEGQ"
     gene            310..840
                     /locus_tag="OQQ19_004250"
                     /pseudo
     CDS             310..840
                     /locus_tag="OQQ19_004250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000772810.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
     gene            1174..>1415
                     /locus_tag="OQQ19_004251"
     CDS             1174..>1415
                     /locus_tag="OQQ19_004251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1805631.1"
                     /translation="MDVYANSQRVFRFQNGVAIAFKNIQAGTARKFTLSSANNSTKNA
                     AFYLWGNPSRSVVAELGDDSGWHFFSQRNTDNSITFA"
BASE COUNT          354 a          312 c          394 g          355 t
ORIGIN      
        1 aggcaccgtt ttacaacgga aaatcggata cccggactgt tgacctgtct gatgctgtat
       61 accggcggct gatactgatg aaagccatgt cgaacattac tgactgttcc gttccggata
      121 ttaaccggat gctgagattt atgttcggaa aaaaacggcg agcttatgtt ctgaataatg
      181 gtgggctgag gatgagttac atctttgagt ccgcgctctc gttggcagaa ctggcgatta
      241 tccagtcgtc gggtgcactg ccgtccccgc cgggtgttta tgtttcagta gttttaaagg
      301 agtcccgtaa tgaaggccag tgataaaccc cgccagctgg cggtcccctt tgcgagtacc
      361 ggagataaaa accgtatccc ggacaaggcg acacagcaga ccagagagag cggtaatgct
      421 gcgtatgatt caggttttcc tccggtgacc atgacagcgg tctcagcggg aggtataccg
      481 ccacacggca aggattttaa cggtctgatg tacgatatta ccgcagcaat acggttcgcc
      541 caggctggcg gtttgtacac gtataatgcc ggttttgcgg gggccattgg tggatatgca
      601 aaaggagcca ttctcgccgg agtcgcaaca acagcggtct ggctgaatac cacagacgat
      661 aacctgaccg atcctgaagg ctccgacagt gcgggctggg taaatcttct tgaggatccg
      721 aaaaggatat tcctgcggca gaagaacaat ctgtcagacc ttcagaataa agggacggta
      781 cgggataatc ttcaggttta cagtaaagag cagtcagatc aacgctatgt tcatcgggaa
      841 ggcgataaaa taaccggaga gctgaaaatc cgtggtgtta atgcgctgag gattttcaac
      901 gaagcttttg gcctgatttt tcgtcgttcg gaagagtgcc tgcaccttat tcccaccagt
      961 gaaggtcagg gggaaaatgg cgatattggt cccctgcgcc cgttcaccat taatttgcgg
     1021 acgggtgaaa tatccatgtc gcataaagtg tctgttggcg gtggttcgca ggtcaatggt
     1081 gcgctgggta tcggcgttca gaacgccctg ggggggaatt caattgttct tggtgataat
     1141 gacaccggat ttaaacagaa tggagacggt attctggatg tttatgctaa tagtcagcgt
     1201 gtattccgct ttcagaatgg agtggctatt gcttttaaga atattcaggc cggaactgcc
     1261 agaaaattca cgttatccag cgccaacaac tccacgaaaa atgcagcgtt ttatttgtgg
     1321 ggtaatccat ccaggtctgt tgttgcagag cttggcgatg attcaggctg gcattttttc
     1381 agccagagga atacagataa cagcatcacg ttcgc
//
LOCUS       DAJVSY010000316         1409 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.320, whole genome shotgun sequence.
ACCESSION   DAJVSY010000316 DAJVSY010000000
VERSION     DAJVSY010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1409
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.320"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..125)
                     /gene="ariR"
                     /locus_tag="OQQ19_004252"
     CDS             complement(<1..125)
                     /gene="ariR"
                     /locus_tag="OQQ19_004252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm/acid-resistance regulator AriR"
                     /protein_id="HCS1805632.1"
                     /translation="MLEDTTIHNAITDKALASYFRSSGNLLEEESAVLGQAVTNL"
     gene            complement(154..426)
                     /locus_tag="OQQ19_004253"
     CDS             complement(154..426)
                     /locus_tag="OQQ19_004253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component-system connector protein YmgA"
                     /protein_id="HCS1805633.1"
                     /translation="MKTSDNERIKYEITGQVVLQILRMKINFSLQTLIKQLLVMKSAE
                     EDAFRRDLIDSIIRDFSNSDSGGPNRRTATADNKSMFNGKKINRIH"
     gene            complement(469..705)
                     /locus_tag="OQQ19_004254"
     CDS             complement(469..705)
                     /locus_tag="OQQ19_004254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component-system connector protein YcgZ"
                     /protein_id="HCS1805634.1"
                     /translation="MHQNSVTLDSAGAITRYFAKANWPTQQETLGEIVTEILKDGRNL
                     SRKSLCAKLLCRLEHATGEEEQKHYNALIGLLFE"
     gene            1019..>1409
                     /gene="bluF"
                     /locus_tag="OQQ19_004255"
     CDS             1019..>1409
                     /gene="bluF"
                     /locus_tag="OQQ19_004255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="blue light-responsive regulator BluF"
                     /protein_id="HCS1805635.1"
                     /translation="MLTTLIYRSHIRDDEPVKKIEEMVSIANRRNMQSDVTGILLFNG
                     SHFFQLLEGPEEQVKMIYRAICQDPRHYNIVELLCDYAPARRFGKAGMELFDLRLHER
                     DDVLQAVFDKGTSKFQLTYDDRALQFFR"
BASE COUNT          413 a          289 c          252 g          455 t
ORIGIN      
        1 attaaattgg tgacagcctg ccctaacact gctgactctt cttctaacaa attacccgaa
       61 ctgcgaaagt aacttgctaa cgctttatca gttattgcat tatgaattgt agtatcttca
      121 agcatggtaa cctctcatct tacttatgaa attttaatgt attctgttta ttttcttacc
      181 attgaacata cttttattgt cagctgtcgc tgttcttcgg tttggccctc ctgaatcact
      241 attgctaaaa tcacgaatta tgctgtcaat taaatcgcgt cggaaagcat cttcctcagc
      301 cgatttcatt acgagtaatt gcttaataag agtctgcaat gaaaaattta tcttcatgcg
      361 cagtatctgg agcaccacct ggccagtaat ttcatatttt atacgttcat tatcagatgt
      421 cttcataacg acttcatagc taacctgtta aataatcagg ctgttgcatt attcaaaaag
      481 caacccaatt agtgcattat aatgtttctg ttcctcttcc ccagtcgcgt gttccagtcg
      541 gcaaagaagt ttggcacaaa gcgactttcg actcagatta cgtccatctt tcaaaatctc
      601 agtcacaatt tccccgagag tttcctgctg agtaggccag ttagcttttg caaagtaacg
      661 agtgattgct cccgcagaat ctaaagtcac tgaattttga tgcatgctac gcctctgtta
      721 aaaatgttaa tcaatgttaa gtgaggtaac aatagcaaac ttgtacgaaa tatgtgtaca
      781 gaatgataaa ttaatttttt gcaattagtg ccaatacata taaaacaatg tgttatgata
      841 aaacatattg catcatttaa ctgacaatct atacgagatt tttcgccaac tagtgttcaa
      901 ctttttccat tttttatcaa tgtaaagaaa cggttatgtt ttggtattaa aagaaagaca
      961 caagaagata tgtctgttac cgtcttactc tcgcctcacc cattaccctg gattgttaat
     1021 gcttaccacc cttatttatc gtagccatat acgtgacgac gaacctgtca aaaaaatcga
     1081 agaaatggtt tcgatagcaa atcgcaggaa catgcagtct gacgtaacag ggatcttact
     1141 gtttaatggt tctcattttt tccagcttct ggaaggtccg gaagaacagg ttaaaatgat
     1201 atatcgggct atatgccagg atccacggca ctataatatt gttgagctgc tgtgcgatta
     1261 cgcgcctgct cgccgttttg gcaaagcggg aatggaatta tttgatttgc gcctgcacga
     1321 gcgagatgac gttttacagg ccgtattcga caaaggcaca tcaaaatttc agctaactta
     1381 tgatgacaga gcgctacaat tttttcgta
//
LOCUS       DAJVSY010000317         1397 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.321, whole genome shotgun sequence.
ACCESSION   DAJVSY010000317 DAJVSY010000000
VERSION     DAJVSY010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1397
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.321"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(273..>1397)
                     /gene="ospC4"
                     /locus_tag="OQQ19_004256"
     CDS             complement(273..>1397)
                     /gene="ospC4"
                     /locus_tag="OQQ19_004256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC4"
                     /protein_id="HCS1805636.1"
                     /translation="HYISEIIQKVHPLSSDERHLLSIIINSNFNFRHQSNSNLSNNIL
                     NIKSFDKIQSENIQTHKNTYSEDIKEISNHDFVFFGVEISNHQEKLPLNKTHHTVDFG
                     ANAYIIDHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDNFKEVVDEVSRYVHGNQGK
                     TDVPIFNTKDMRLGIGLHLIDFIRKSKDQGFREFCYNKNIDPVSLDRIINFVFQLEYH
                     IPRMLSTDNFKKIKLRDISLEDAIKASNYEEINNKVTDKKMAHQALAYSLGNKKADIA
                     LYLLSKFNFTKQDVAEMEKMNNNRYCNLYDVEYLLSKDGANYKVLEYFINNGLVDVNK
                     KFQKANSGDTMLDNAMKSKNPKMIDFLLKNGAILGKRFEI"
BASE COUNT          437 a          243 c          228 g          489 t
ORIGIN      
        1 tcccgtaaag acaggagtca agttcccgct ccgacataac tgcgtgcaat ggattttgaa
       61 ggaaccgtca gcccattccc cggaggcaaa catgggctgg caaaagtgta gcggtattag
      121 gcacagctat ttaggaaaga gggaccatct ccatctcatt aaatggacca cgccagacaa
      181 ttcactgtca tgctgatgct gcactgtggg gacagaatca ctcatgatga cttcgataat
      241 cgacgacatt attatttggc cgagctttta ggtcatatct caaatcgttt gcctaatatt
      301 gctccatttt ttaataaaaa atcaatcatt tttggatttt tgcttttcat tgcattgtca
      361 agcatagtgt ccccactatt tgctttttga aattttttgt ttacatcaac caatccatta
      421 ttgataaaat attctagcac tttatagttg gcaccatctt tactaagtaa gtattcaaca
      481 tcatacagat tacaatatct attgttgttc attttctcca tctctgcgac atcttgtttt
      541 gtaaaattaa atttagatag taaataaagt gctatatcag cttttttatt gcctaaagaa
      601 taagcaaggg cctgatgagc cattttttta tcagtcactt tattgttaat ctcttcataa
      661 ttagatgctt taatcgcatc ctccaaagat atgtctctga gttttatttt tttgaagtta
      721 tctgtactta gcattcttgg tatatgatac tcaagctgaa acacaaagtt tataattcta
      781 tccagactaa caggatcaat atttttgtta taacaaaact ctctgaatcc ttgatcttta
      841 ctctttctta taaaatcaat aagatgcaac ccaattccaa gcctcatatc tttagtgtta
      901 aatattggaa catcagtttt cccctgatta ccatgcacat acctgctaac ttcatccaca
      961 acctctttaa agttatctaa gaaaaatgat tggtgctcat ggtaaaaaac aggtggaata
     1021 gcattatcaa agtgatcggt taatgtcata tatccatatg gagagtcatg atcaatgata
     1081 tacgcattgg cgccaaaatc tacagtatga tgtgttttat ttagcgggag tttttcttga
     1141 tgattggaaa tttcaacccc aaaaaaaaca aaatcgtggt tagagatttc tttaatatcc
     1201 tcagagtatg tattcttatg tgtttgtata ttttcagact gaattttatc aaaggattta
     1261 atattaagaa tattatttga cagattagag ttactttgat gtctgaagtt aaaattagaa
     1321 ttaataataa tagaaagtaa gtgacgttcg tctgaagaaa gaggatgaac tttttgtatt
     1381 atctcagaga tatagtg
//
LOCUS       DAJVSY010000318         1343 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.322, whole genome shotgun sequence.
ACCESSION   DAJVSY010000318 DAJVSY010000000
VERSION     DAJVSY010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1343)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1343)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1343
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.322"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            86..1005
                     /locus_tag="OQQ19_004257"
                     /pseudo
     CDS             86..1005
                     /locus_tag="OQQ19_004257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415843.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
     gene            1005..>1343
                     /locus_tag="OQQ19_004258"
     CDS             1005..>1343
                     /locus_tag="OQQ19_004258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000680621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS1805637.1"
                     /translation="MKHIQIRNSDMAWHIAANIQFPPNFDESKQYPAIISVHPFGSCK
                     EQTSGNIYGKALAEKGYLVLAYDASFQGESGGEPRWIEDPTQRVEDISRVIDYAVTLP
                     YVNAERIGVLG"
BASE COUNT          380 a          302 c          326 g          335 t
ORIGIN      
        1 tttagggtct aatcaactta atgatcaata tctatagtga tatcaccaac cgttaaaacg
       61 aaccgacaac tccatgagga acggaatgat gaataataaa gtcagcttca ctaacagcaa
      121 taatccaacc atctctttgt ctgcagtgat ctatttccct ccaaaatttg atgaaacccg
      181 tcagtatcag gcaattgtgg tatctcaccc aggtggggcg ttaaagaaca aacggccgga
      241 acctatgcca aaaaactggc ggaaaaggga tttgtcacta ttgcttatga cgcatcttat
      301 caaggtgaaa gtggcggcga gccgcgtcag ttagaaaacc catacattcg tactgaagac
      361 atcagtgccg tgattgatta cctgacaacg ctttcttatg tcgacaatac ccgaattggt
      421 gcgatgggaa tttgtgccgg tgcaggatat acagccaatg ctgcaattca ggatcgccgc
      481 atcaaggcca tcggtaccgt tagtgcggtc aatattggtt cgatgttccg taatggttgg
      541 gaaaacaatg tgaaatctat tgatgccctg ccatacgttg aagcgggttc aaacgcccga
      601 accagcgata ttagcagcgg agaatatgcc gttatgccac tggcaccaat gaaggagtcc
      661 gatgcgccga acgaagaact gcgtcaggcc tgggagtatt accacacccc tcgcgcgcag
      721 tatccaacag caccgggtta cgctactttg cgcagcctta accagattat tacctttgat
      781 gcttaccata tggcggaagt gtacctgact cagccgatgc agattgtggc gggcagccag
      841 gcagggagca aatggatgag tgacgatctg tacgatcgag catcaagcca agataaacgc
      901 tatcacattg ttgaaggcgc aaaccatatg gatctttatg acggcaaagc ctatgtggct
      961 gaagcaattt cagtattagc tccgttcttt gaggaaactc tgtaatgaaa catattcaaa
     1021 tccgcaatag tgatatggcc tggcatattg ctgccaatat tcagtttcca ccaaattttg
     1081 atgagtcaaa acagtatccg gcgattatca gcgtccatcc ttttggcagt tgtaaggagc
     1141 agacgtctgg caatatctat ggcaaagcat tggctgaaaa aggctatctc gttctcgctt
     1201 atgacgccag tttccaggga gaatctggtg gggagcctcg ctggatagaa gatccgacac
     1261 agcgcgtaga ggatattagc cgtgttatcg attatgcagt aactctgcca tatgttaatg
     1321 ctgaacgtat tggcgtgctg gga
//
LOCUS       DAJVSY010000319         1336 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.323, whole genome shotgun sequence.
ACCESSION   DAJVSY010000319 DAJVSY010000000
VERSION     DAJVSY010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1336)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1336)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1336
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.323"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..176)
                     /locus_tag="OQQ19_004259"
     CDS             complement(<1..176)
                     /locus_tag="OQQ19_004259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001544403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage regulatory CII family protein"
                     /protein_id="HCS1805638.1"
                     /translation="MFDYQVSKHPHFDEACRAFALRHNLVQLAERAGMNVQILRNKLN
                     PAQPHLLTAPEIWLL"
     gene            complement(209..430)
                     /locus_tag="OQQ19_004260"
     CDS             complement(209..430)
                     /locus_tag="OQQ19_004260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001247707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /protein_id="HCS1805639.1"
                     /translation="MRPNISITLTTPHVTIERYSELTGLSIDTINDMLADGRLIRHRL
                     RKDKKREKVMINIAAMTVDALSECNLNLN"
     gene            556..1125
                     /locus_tag="OQQ19_004261"
     CDS             556..1125
                     /locus_tag="OQQ19_004261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001047328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage repressor protein CI"
                     /protein_id="HCS1805640.1"
                     /translation="MNLEKGGRGAIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD
                     SFPAEWVIQCALETGTSLNWLTTGHGSKQTSGNTNTMEVAKYVLSDGALREDGFYIFD
                     KGFLPSTFKKPFVITDNNSEFICDKEFDDIRDGKWVISIDGEVTIRDITRLPGGRIFV
                     EGGNRAFECKIEDIEIIGKIISLTVKYVR"
     gene            1141..1332
                     /locus_tag="OQQ19_004262"
     CDS             1141..1332
                     /locus_tag="OQQ19_004262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001513672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805641.1"
                     /translation="MLGKVFFVVLSCSLLLSPLTTYAKNYPCSGKKGGVSHCTSDGKF
                     VCNDGTISKSKKICTKNSR"
BASE COUNT          398 a          242 c          300 g          396 t
ORIGIN      
        1 agcagccaga tttctggtgc ggttaataaa tgaggctgag ctgggttcag cttgttccgc
       61 agaatctgca cattcatgcc tgcacgttct gccagttgca ccagattgtg gcgcagtgca
      121 aatgcacgac aggcttcatc aaaatgtgga tgtttggaaa cttggtaatc aaacatggtc
      181 aatgcctctg atgtatttca gaatcgaact aattaaggtt tagattgcat tctgaaagcg
      241 catcaacggt cattgctgct atgttgatca tcactttttc gcgtttttta tctttgcgca
      301 gacggtgacg gataaggcgt ccatcagcca acatgtcatt gatggtatcg atggatagcc
      361 ctgtcagctc gctatagcgt tcaatagtca catgaggcgt ggtaagagtg attgaaatgt
      421 taggtctcat gatgcaacat tcctcgttta atgatgatta atcaggacga atacggatcg
      481 tttgtatttt gtgaacacca taaacatacg attgcacagt gaaatcgtca agataaaagt
      541 tcacttggag tgaccatgaa tttggagaaa ggcggacgag gcgccataga gcgcatggta
      601 gaagcttatg gattcaagac tcgacaggcg ttgtgcgatc atttaggaat ctctaaaagt
      661 acactcgcca cacgctacat gcgtgactca ttcccagcag aatgggtaat ccagtgcgcc
      721 cttgaaacgg gcacctcgct taattggctc acaaccggac atggttcaaa gcaaacttca
      781 ggtaatacaa atactatgga agttgctaaa tatgtattat ctgatggtgc cttgcgtgaa
      841 gacggttttt atatttttga taagggattt ctaccctcta cgtttaaaaa accttttgtc
      901 atcacagata acaattctga atttatttgt gataaagaat ttgatgacat acgtgatggt
      961 aaatgggtaa taagtattga tggcgaagta acgatccgtg acattactcg tttacccggt
     1021 ggaagaatct tcgtcgaggg tggaaacaga gccttcgaat gtaagataga agacattgaa
     1081 ataattggta aaattataag tttaacagtt aaatatgtta gataataccg ggaggaaact
     1141 atgcttggta aagtattttt tgtggtttta tcatgctctt tgttattaag cccactaact
     1201 acctatgcta aaaattatcc ttgttctggg aaaaagggag gtgtctctca ctgtacctcc
     1261 gatggaaaat ttgtttgcaa tgatggaact attagtaaat ccaaaaaaat ctgtactaaa
     1321 aactcacgat aacttt
//
LOCUS       DAJVSY010000320         1329 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.324, whole genome shotgun sequence.
ACCESSION   DAJVSY010000320 DAJVSY010000000
VERSION     DAJVSY010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1329
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.324"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(170..499)
                     /locus_tag="OQQ19_004263"
     CDS             complement(170..499)
                     /locus_tag="OQQ19_004263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310836.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF496 family protein"
                     /protein_id="HCS1805642.1"
                     /translation="METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLL
                     LDNLSDYIKPGMSVEAIQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGE
                     MKNGEAK"
     gene            complement(671..>1329)
                     /locus_tag="OQQ19_004264"
     CDS             complement(671..>1329)
                     /locus_tag="OQQ19_004264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HCS1805643.1"
                     /translation="TGEIDTALWRSGDVLLGSLLAMLFTGIWPQRAFIHWRIQLAKSL
                     TEYNRVYQSAFSPNLLERPRLESHLQKLLTDAVKMRGLIAPASKETRIPKSIYEGIQT
                     INRNLVCMLELQINAYWATRPSHFVLLNAQKLRDTQHMMQQILLSLVHALYEGNPQPV
                     FANTEKLNDAVEELRQLLNNHHDLKVVETPIYGYVWLNMETAHQLELLSNLICRALRK
                     "
BASE COUNT          326 a          311 c          312 g          380 t
ORIGIN      
        1 agtgcggtta ataacaatgg agttacagaa ctttttgcct tgctgcatac agaagatgtc
       61 tgtcgctaat ttcggtaagt tatcagatgg gaatgatgac ggtgatacac agaaaagaat
      121 caatgagcaa tgagggttgc caggcaaccc tcattgaata aaacaggaat tacttcgctt
      181 cgccgttttt catttcgccc atagctttca gctttttgga gatatcgcgg cgttctttgg
      241 agagctcggc atttttgatg atgtaatcgt caacgcgatc ttcatagtca cctttcatgc
      301 tggcgatgat gccctggatt gcttcaacgc tcatccccgg cttgatgtaa tcgctcaggt
      361 tgtccagcag caggacgcgc ttctggttgt cacggatctt tttctcaacg tcctgaattt
      421 cacgttgcag tttgttctta cgacggaaca gacgaacaaa ttccagtacg tcctggaatg
      481 aaggcttggt agtttccatt tttatacccc tgataatgtg agagtcggat tcgtttaagc
      541 aaccgctatc cgttagagcc aacattactc atagctgccg cagatgacaa tgcttttatc
      601 ccttttcact atcataccct ttatccttgc tgaatcgaag cagcagcaag atgattctgt
      661 agttcaggaa ttatttgcgc aaggcccggc aaatcagatt cgatagcaac tcaagctgat
      721 gtgccgtttc catgttcagc cacacataac catagattgg tgtttccaca accttcaggt
      781 catggtggtt attgagcaac tgacgcagct cttccactgc atcgttcaat ttttccgtat
      841 tggcaaaaac cggctgcgga ttaccttcgt acaacgcatg aacaaggctc agcagtattt
      901 gctgcatcat gtgctgggta tcacgaagtt tttgcgcgtt caataacacg aaatggctgg
      961 ggcgcgtggc ccagtacgca ttgatttgca actccagcat acaaaccaga ttgcggttaa
     1021 tggtctggat accttcatat atcgattttg gaatacgggt ttctttgctg gcgggcgcaa
     1081 tcagcccacg cattttcacg gcatcggtca ggagtttttg tagatggctt tccagacgtg
     1141 ggcgttcgag taagttcggt gagaatgcag attgatagac ccgattatac tcggtcagac
     1201 ttttcgccag ttgaatgcgc cagtggatga acgcccgttg tggccagata ccggtaaaca
     1261 acattgccag taaagagccg aggagcacat cgccgcttcg ccataacgcc gtatcaattt
     1321 cacctgtcg
//
LOCUS       DAJVSY010000321         1315 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.325, whole genome shotgun sequence.
ACCESSION   DAJVSY010000321 DAJVSY010000000
VERSION     DAJVSY010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1315)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1315)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1315
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.325"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..744
                     /locus_tag="OQQ19_004265"
     CDS             <1..744
                     /locus_tag="OQQ19_004265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS domain-containing protein"
                     /protein_id="HCS1805644.1"
                     /translation="YTPARKIHLYHCDHRGLPLALISTEGATEWCAEYDEWGNLLNEE
                     NPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNP
                     ISEIDPQGLNPLILGVVALMSCGLFSSGGVIQSGQQRRDQYGRKVNPEADKLTDEHKS
                     GVNPGGNCSPQNLSDLQNEKNRLCNQSRACAPQMLRKEILRRYEINLACASVRKQINN
                     QCFGGGDKAHMEEENKAYKTAADCSGLIK"
     gene            741..1244
                     /locus_tag="OQQ19_004266"
     CDS             741..1244
                     /locus_tag="OQQ19_004266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000720080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805645.1"
                     /translation="MKKIIFSNESAVYDELMIHFPCQPLPHISNDIIGLDELDVVYNF
                     FQKKQWNEIANNLKIKDDSYALELGITFLPEKVFCYYIPLYIYVSLFNKNDFWVFESD
                     FIQQYLCPEYRDYDDFLNFVFNFSDIQLSIIAQFMSYESDAGFFYASKACMDFWEDYS
                     PLLHKKI"
BASE COUNT          414 a          228 c          292 g          381 t
ORIGIN      
        1 tacacgccgg cgcgaaaaat ccacctgtac cactgcgacc atcgcggcct gccgctggcg
       61 cttatcagca cggaaggggc aacagaatgg tgcgcagaat acgatgagtg gggcaacctg
      121 ctgaatgaag agaacccgca ccagctgcag cagcttatcc gtttgccggg gcagcagtat
      181 gatgaggagt ccggcctgta ttacaaccgc caccgctatt atgacccgct gcaggggcga
      241 tatatcactc aggacccaat tgggctgaag gggggatgga atttttatca gtatccgttg
      301 aatccgatct cagagataga cccacaaggg ttaaatccgt taattcttgg tgttgtagca
      361 ctgatgagtt gcggtttgtt ttcatcaggt ggtgttatcc aaagtgggca acaacgcaga
      421 gatcaatatg gacgtaaagt taatccagaa gccgacaaat taacagatga acataagtca
      481 ggtgtaaatc ctggaggtaa ctgtagtccc cagaacctga gtgacttaca aaatgaaaaa
      541 aacagattat gtaaccagtc tagagcttgc gctcctcaga tgctgagaaa agaaatattg
      601 agacggtacg agataaattt ggcgtgcgct tcggtcagaa agcagattaa taatcagtgc
      661 tttggtggtg gagataaggc ccatatggaa gaagagaata aagcatataa aacagcagct
      721 gattgcagtg gcttaataaa atgaaaaaaa taattttctc taacgagagt gcagtctatg
      781 atgaacttat gattcatttt ccatgccagc cattacctca tatttcaaat gatattatag
      841 ggctggatga actggatgtt gtatataatt ttttccaaaa gaaacaatgg aatgaaatag
      901 ccaataattt aaaaataaag gatgactctt atgctttaga gttaggaatt acattcctcc
      961 ctgagaaagt attctgctat tacatccctc tgtatattta tgtctcgttg tttaataaga
     1021 atgatttttg ggtttttgaa tccgatttta ttcaacaata tttatgtcct gagtatcggg
     1081 attacgatga ttttttgaat tttgttttta atttttcaga tatacaacta tctattattg
     1141 cacagtttat gtcttatgaa tcagacgctg gattctttta tgcaagtaaa gcttgtatgg
     1201 atttttggga agattattca cctctattac ataagaaaat ttaatcgtaa aaggtataaa
     1261 tggtttaata aaaaacttgt ctactcgttg gagtagatga aaaataagat gacgt
//
LOCUS       DAJVSY010000322         1311 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.326, whole genome shotgun sequence.
ACCESSION   DAJVSY010000322 DAJVSY010000000
VERSION     DAJVSY010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1311)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1311)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1311
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.326"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(1..483)
                     /locus_tag="OQQ19_004267"
     CDS             complement(1..483)
                     /locus_tag="OQQ19_004267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1805646.1"
                     /translation="MEINVTAPALLTDEHILQPFDCGNEVLSNWLRGRAMKNQMLNAS
                     RTFVICLEDTLRVVGYYSLATGSVTHAELGRSLRHNMPNPVPVVLLGRLAVDVCIQGH
                     GFGKWLLSDAIHRVVNLADQVGIKAVMVHAIDDDARAFYERFGFVQSVVAPNTLFYKV
                     "
     gene            complement(474..776)
                     /locus_tag="OQQ19_004268"
     CDS             complement(474..776)
                     /locus_tag="OQQ19_004268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858193.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HCS1805647.1"
                     /translation="MEVFMSTAASVRKTPREHQINIRATDEERAVIDYAASLVNKNRT
                     DFIMELAYQEAKNIILDQRLFVLDNERYDSFITQLEAPVQNAEGRERLMAVKPEWK"
     gene            1048..>1311
                     /locus_tag="OQQ19_004269"
     CDS             1048..>1311
                     /locus_tag="OQQ19_004269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_145811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805648.1"
                     /translation="MSHNLEHQKVHTRMVKEVLKAVARANNHPYKSVFADFITGHPSC
                     TVCFWETFHKMYPDSPYEYVTFCHTCRRFDLYETEAEMKADDPK"
BASE COUNT          390 a          329 c          276 g          316 t
ORIGIN      
        1 tcagacttta taaaacaagg tattaggtgc cacaactgac tgaacaaaac caaaacgctc
       61 ataaaatgct ctggcgtcat catcaattgc atgtaccata acagccttaa tgccaacctg
      121 atcagccaga ttgacaaccc ggtgaatggc atcacttagt agccatttac cgaaaccatg
      181 cccctggata caaacatcaa cagccagacg ccctaacaga acaacaggga caggattggg
      241 catgttatgc cgcaaactgc gaccaagctc ggcatgagtg acggaaccag tagctaatga
      301 gtagtatccc acaacacgta aagtatcctc caagcaaata acgaacgtgc gagaagcatt
      361 gagcatctgg tttttcatag cccgaccacg taaccagtta cttagcacct catttccaca
      421 gtcaaatggc tgaagtatat gctcatccgt caacaatgct ggcgcggtga catttatttc
      481 cattcaggct ttaccgccat cagacgttca cgcccttctg cattctgcac aggagcttcc
      541 agttgcgtaa taaacgaatc ataacgttcg ttatccagca caaataaacg ttgatccagg
      601 ataatgtttt tagcttcctg gtacgccagt tccatgatga aatcggtacg gttcttattg
      661 accaagctcg cagcataatc aataacggct cgttcctcat cagttgcccg gatgttaatc
      721 tgatgttctc gcggtgtttt acggacgctt gcagctgtag acataaaaac ctccattggt
      781 aacaatttgc tatgcaatta atgttatcgc aaatggtaac agaacgctat acagaatcac
      841 ttacgggaaa agcgatcccc tgataaaaac aatggcagag acctgaacat tgtgacgatg
      901 atctgtgtcg gcgcacaaat catgtctgat tacggccgtt taatgtgatt ttgataatga
      961 aatgcctgaa ccacggcagc ctggcggctg caaatcgggg tgtggcagaa tatgagcttt
     1021 cagagtaacc atccagaatg agttcccatg tcacacaacc tggagcacca gaaagtccac
     1081 accagaatgg tgaaagaggt tctgaaagcc gtcgccagag ccaataatca cccttataag
     1141 tccgtatttg cagactttat caccggtcat ccctcctgca cggtctgttt ctgggaaacc
     1201 ttccacaaaa tgtacccgga ttcaccgtac gaatacgtca cgttctgcca tacctgccgt
     1261 cgttttgatt tatacgaaac agaagcggag atgaaggcgg atgacccgaa g
//
LOCUS       DAJVSY010000323         1302 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.327, whole genome shotgun sequence.
ACCESSION   DAJVSY010000323 DAJVSY010000000
VERSION     DAJVSY010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1302
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.327"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..908
                     /gene="pocR"
                     /locus_tag="OQQ19_004270"
     CDS             <1..908
                     /gene="pocR"
                     /locus_tag="OQQ19_004270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="regulatory protein PocR"
                     /protein_id="HCS1805649.1"
                     /translation="AATLNSELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFC
                     QMMRQHPQLSTRCRMSDRCGGLEASKSDQPCIYRCHAGLTDFSIPLVIAGHLVGFVLC
                     GQVRLRNDYVDLVDILNVDDCWQADPELLNEFRKVPEMDYSRVMASADLLKLIVENCL
                     KKQLNFVVIKENKSQSDSVRQTRAPSPHDNKMKKALRYIDAHLSDDLRLEDVASHVYL
                     SPYYFSKLFKKYHGIGFNAWVNQQRMASARELLCHSDWSIASIARNLGFSQTSYFCKV
                     FRQTYQVTPQVYRQQVSENAAMETV"
     regulatory      997..1172
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
BASE COUNT          353 a          277 c          324 g          348 t
ORIGIN      
        1 ctgcggcgac acttaattca gaactcatta ataaaatcgc gcaggatttt gcgcaggcga
       61 ccagccttgc ggttgtcgtg gtcaatattc acggcgatga aatttccgag ctgtttaact
      121 tcactccatt ttgtcagatg atgcggcaac accctcagct aagcactcga tgtcgcatga
      181 gcgatcgttg tgggggcctg gaagcctcta aatccgatca gccttgtatt tatcgctgtc
      241 atgccggatt aaccgatttc tctattccac tggtaatcgc cgggcattta gtcggttttg
      301 tattgtgcgg gcaagttcgt ctgcgtaatg attatgtcga tttggtcgat attctgaatg
      361 tcgatgattg ctggcaggca gatcccgaat tacttaatga atttcgcaaa gttcctgaga
      421 tggattactc aagagttatg gcctctgctg atttgttgaa gttgattgta gaaaattgcc
      481 tcaaaaaaca actcaatttt gtggttatta aagagaacaa atctcagtca gattcggtgc
      541 gccagactcg tgcgcctagt ccccacgaca ataaaatgaa aaaagcttta cgctatattg
      601 atgcgcattt atcagacgat ttgcgtctgg aagatgtcgc ctcgcacgtt tatctaagcc
      661 cttattattt cagtaagtta ttcaagaaat accatggaat cgggtttaat gcgtgggtaa
      721 accaacaacg gatggccagc gcgcgtgagt tactgtgcca tagtgactgg agcatcgcca
      781 gcattgcgcg taatttaggt ttttcgcaaa ccagttattt ttgcaaagtt ttccgtcaga
      841 cttatcaggt tacgccgcag gtgtatcgac agcaagtgag tgaaaatgcg gcgatggaaa
      901 cggtatagag taaatgctaa aaaaagggaa ggtttaaata aacgctggaa tgaataatta
      961 acgttattta cgtgttatgg gaaaagtaaa atcagctcat aacatacgct gacaggtgtg
     1021 gcacatttgt gcctgggaag agagtgaaaa tccctcgcag cccccgctgc tgtaatgctg
     1081 acaaacccga aaatgccact gatcgcgaga ttgggaaggt cgggagagga tgacgctaag
     1141 ccagaagacc agccagtcag tcaataccaa caacttcggt gggaagtggg ttgcccggaa
     1201 gcgtccggta gagtacaggc gcgtctttat acccctacca ccctgaaagg atcagggtat
     1261 ggcggcatca tttagttctt tcatcgcagt gccgacaggc ac
//
LOCUS       DAJVSY010000324         1273 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.328, whole genome shotgun sequence.
ACCESSION   DAJVSY010000324 DAJVSY010000000
VERSION     DAJVSY010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1273)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1273)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1273
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.328"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(57..896)
                     /locus_tag="OQQ19_004271"
     CDS             complement(57..896)
                     /locus_tag="OQQ19_004271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000935589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HCS1805650.1"
                     /translation="MLNVAIENQNGWNYSAPAPHKTGAGISTPKVTRAHNRAEAVFLC
                     VMHSHIQIMVRRAGQPQGWPGSRVTGSANPVRLTTHEISTSAGELINLSLEDVIMATT
                     LSHPDVTIENGRAVTTSISIAEFFGKQHHHVVQKIESFECSELFLTSNFSRVKFEHRG
                     NSYNAYQITKNGFVFLVMGFTGKKAATFKEAYIAEFDRMEAELRQNNTPPADKMIPGD
                     GRTLVVHFDKFGNVEFTETVPDGALVCTLETFRFYLEKQGWTLVNRGAIKNMTVEQLL
                     SLK"
BASE COUNT          330 a          312 c          296 g          335 t
ORIGIN      
        1 tgagggcagg tgtaaaacaa taatcaagca tggggttcat atccatagct ccatttttat
       61 tttaaggaaa gcaactgctc tacggtcatg tttttaattg cgccccggtt tacaagagtc
      121 cagccctgtt tttccagata aaaccggaaa gtctccaggg tacagaccag tgcgccatca
      181 ggaacggttt cggtgaattc gacattgccg aatttgtcga agtgaacaac cagagtgcga
      241 ccatcacccg gaatcatctt gtcagcaggt ggggtgttat tctggcgcag ttcggcctcc
      301 atgcggtcga actcagcaat gtaggcttcc ttgaatgtgg cggctttttt gcccgtgaag
      361 cccatcacca ggaaaacgaa gccgtttttg gtgatttggt aggcgttata agaattgccg
      421 cggtgttcga atttaacccg cgaaaagttg ctggttaaaa atagttcaga acattcgaag
      481 gattctattt tttgaacaac atggtgatgc tgcttgccaa aaaactcagc aatcgaaata
      541 gaagtagtga cggcgcgacc attttcgatg gttacgtcag ggtgagaaag ggtagtagcc
      601 ataatgacat cctcaagtga taagttaatt aactcaccag cagaggtgct aatctcatgg
      661 gtggtgagac gcacagggtt agcactaccg gtcactcgag aacccggcca gccttgcggc
      721 tgccccgcac gcctcaccat aatttgaatg tggctgtgca ttacgcataa aaaaaccgct
      781 tcagcgcggt tatgcgctcg agtaactttc ggggtgctaa tcccggcacc cgttttatga
      841 ggtgcaggtg cactataatt ccacccgttc tggttttcaa tagctacatt caacattttc
      901 tctttccttt catcaccgaa gtgaattttg tgatgcggtg cctagtgcct ccaggtgacg
      961 ttaaccagtt aacaattaca gtcggctttc ccacccaaac caataaggac taacatgact
     1021 tttaactgtg ccgcgtgcgc ttagccgcat tcaccgcatc acaaaattca ctttaaaaag
     1081 ggcggacatc agccagcaat taaaccgatg ccgccaactg gtacttcaca cagcaatgtc
     1141 gttatttaca accggaagcg cactcccacc atttaaattt cacagacaag accgactctt
     1201 tatgaatacc ggaaatgcgc cttcgtgttg tgcccggttt tatttcacca cctccgggct
     1261 ttggtggcct cgg
//
LOCUS       DAJVSY010000325         1261 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.329, whole genome shotgun sequence.
ACCESSION   DAJVSY010000325 DAJVSY010000000
VERSION     DAJVSY010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1261)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1261)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1261
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.329"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(1..1261)
                     /locus_tag="OQQ19_004272"
                     /pseudo
     CDS             complement(1..1261)
                     /locus_tag="OQQ19_004272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246439.1"
                     /note="internal stop; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT          372 a          355 c          280 g          254 t
ORIGIN      
        1 ccaaccagta aaacgcttca gttttcaacg caccccacag catcggccag aaaatgagtc
       61 ctgcaattgc ccctgtgcgc ataatagcgc gggcaaatcc gaccccagta gggcgaatag
      121 cgggaagata agagagtgtg gcaatggtca tgcccagccc accaggaccc gctgaatgga
      181 agaaaataat tgatcccaat aaccctaaag acagccaggg attagtcgtt gccagtgcgc
      241 ctaacgacag caatgctaag gtcacaacag caaatccata catcgactgt cggcgagtac
      301 ccagtcgttg gagaataaac gagccgatca tcccgcctgt caccccacaa agggcattca
      361 cgacggcaga accggtcaac gcgccagtaa gcccgccact tattattccc gccaacgtaa
      421 gaggaagata aacacctacg gcgttatatt gccacgcctg catggttgcc acgacacagc
      481 caagaatggt gcgtttgcgg taacgatcat taaataagat gccatatcca ccactgtatt
      541 tattctctgc tttttccgag aatttcgctt ctgttgtacc cgatgccgca acgcgagcct
      601 gaacaccata acgttttccc agaatgtcgc acgcttcctg gtaacgcccg acgcgtgcgg
      661 cccacattgc ggattcacca ataaagaagt aacgcaaaat catgaagatg actgcaaaaa
      721 tagctccgat gaatattccg taacgccaca attgttcttc agcgataccc gacagaagca
      781 gcggcaaaag taccaaataa acaacggttg tcgaaacata ccaggccatt tgccagaggt
      841 tgaccgacgt tccggttttc ttcgacgttg aaccacgaag ctctgccacg gcattggttg
      901 ccaaagggaa gtcgatgcct aaaccaaagc ccatgatgac gcggcacacc agcacccacc
      961 agatactggg agcaatagct accgctgcag caccgatggt gcacagcccc atgccaataa
     1021 taaatgcccg cttttgccca aagcggttta ttactcggtt cgctaataaa ccgccaatta
     1081 acgcggcgat taatactgat gcattgacgg ttgcagcaag acccggcgaa atgccgaatt
     1141 gagcggcaat gtatttatta ccaaacccca ccatcgccgc ctagtaggca tcaatcaata
     1201 tgccgcccaa agcaataaaa ataacgccga tactggtgtt gattgcagag ttcttattaa
     1261 c
//
LOCUS       DAJVSY010000326         1212 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.330, whole genome shotgun sequence.
ACCESSION   DAJVSY010000326 DAJVSY010000000
VERSION     DAJVSY010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1212)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1212)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1212
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.330"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(50..1192)
                     /locus_tag="OQQ19_004273"
     CDS             complement(50..1192)
                     /locus_tag="OQQ19_004273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000017332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HCS1805651.1"
                     /translation="MSGWFDLTLNQRVYNQDGKTANAVVTYDGNVGEQYNDAWFGDSA
                     NENIMQFSDIYLTTRGFLPFAPEADFWVGKHKLPQYEIQMLDWKTLTTDVAAGVGIEN
                     WALGVGLFDMSLSRDDVDVYSRDFSRTSQMNTNSVDVRYRNIPLWDDATLSLMAKYSA
                     PNKTDQQQDNENDNSYFEMKDSWMLTSVLRQNLQRDTFNEFTLQVANNSYASSFASFS
                     DASNTMAHGRYYYGDHTNGIAWRLISQGEMYLTDNIIMANALVYSHGEDVYSYESGAH
                     SDFDSIRTVIRPAWIWNTWNQTGLELGWFKQQNKTQQGVTLNESAYKTTLWHALKVGE
                     SILGSRPEIRFYGTYINILDNELSNFKFNENSKDEFMAGIQAEVWW"
BASE COUNT          348 a          296 c          221 g          347 t
ORIGIN      
        1 aaaaaccttt tttaaatcct gacatacaca actccttaac taaaatagat taccaccaga
       61 cttccgcctg gatgccggcc ataaactcgt ctttgctgtt ctcattaaac ttaaaattcg
      121 ataattcgtt atccagaata ttgatatacg ttccatagaa gcgaatttct ggtcgtgaac
      181 ctaaaatgct ttcacccact ttcaatgcat gccagagtgt cgttttataa gccgattcat
      241 ttagtgttac accctgctga gttttgttct gttgcttaaa ccagcctaat tcaagccccg
      301 tctgattcca tgtattccag atccaggccg gtcttattac agtgcgaata ctgtcaaaat
      361 cactatgagc accactttca taactataaa catcttcgcc gtgagaatag acaagcgcgt
      421 tagccataat aatattgtca gtaagataca tctcgccctg agagattaaa cgccaggcga
      481 tcccattggt atgatcacca tagtaatagc gaccatgcgc catcgtatta ctggcatctg
      541 agaaactggc aaaactgctg gcataggaat tattggcaac ctgtaacgta aattcattaa
      601 acgtatcgcg ttgcaggttt tgccgtaaaa cagaagtcag catccagcta tctttcattt
      661 caaaataact gttgtcattt tcgttatctt gttgttgatc cgttttatta ggtgcggaat
      721 atttagccat taatgataat gtcgcatcat cccataacgg gatattgcga taacgaacat
      781 ccacagaatt ggtattcatc tggctggtac gcgaaaaatc acgagagtaa acatcgacat
      841 catcacggct taaggacata tcaaacagcc ctacaccaag tgcccagttt tcaatcccca
      901 cacccgcggc gacatccgtg gttaaggttt tccagtccag catctggatc tcatattgcg
      961 ggagtttatg tttgccgacc cagaagtctg cctctggtgc gaagggtaaa aaacctcgcg
     1021 ttgtcaggta aatatcgctg aactgcatga tattttcatt ggcactgtca ccaaaccagg
     1081 catcgttata ctgctcaccc acgttgccat cataggtaac gaccgcattt gccgttttac
     1141 cgtcctgatt ataaacacgc tgatttaagg tcaggtcaaa ccaaccgctc atctcattac
     1201 caaaacgtcc ca
//
LOCUS       DAJVSY010000327         1210 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.331, whole genome shotgun sequence.
ACCESSION   DAJVSY010000327 DAJVSY010000000
VERSION     DAJVSY010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1210
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.331"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
BASE COUNT          370 a          210 c          237 g          393 t
ORIGIN      
        1 ttcaaaataa acgtttaata gggacaatca ccatttggat tgtccgctga ggaggcgaac
       61 gttttcctag acagctttat catgtcagcc cacattgttg gcgctgacaa tactaaggac
      121 aaacgatggg gaagtagctt tttagcgtta ttttcgggag taaaaaacat ggtatctttc
      181 cgtatgtcag ttgtatcttg ctggtattcg tagtcgtgat aaggcataca acgatattta
      241 tcttcacgtt agtgaagaat aagttgtttt gtgatctatg ttaatctggg attacaatcc
      301 gggcttgata catcgcatca cgacttttat tctcttcaga atagaatatg ttactccccg
      361 ttttacaggc tcaggatttg aattacaaat tatactttta agtgaacaat aactaggggt
      421 atttcttatt tcctgaaacc aggcttggcc catttcggga tgagtttgaa aaaactcctg
      481 acgcatacga tagtgatgaa ataaacgaaa caaattacgt caacaaactc aggcgtcttg
      541 cctgacatgc tcctgacatc attgatattc acgctcatct ggcatatgca tttgcgctct
      601 ttatgctgca attctggcga atgttcattt acagcgtcat caggatgccg ttatactcat
      661 tgataaaata ctaacatata accctgagaa taatcagggg acacgctggt tactggggac
      721 ggaattgtta cgtgctggca agcatgacag ggctctgtac gtattgacag gacatgtcaa
      781 tgaatttccc ccctactggt acgagcttgc tcttttacat tttatgaatg aggcatatat
      841 taatgctgca acggcatttc gatatggatt tttaacaagc atatattgtt gaaatgcttt
      901 gttagaatct ttatccattc cctggggctg tatagtatga tttttcaggt atttctgaat
      961 acagccaaat attattgcaa aatattctct aaattattag ttaaatatcc ataagcatta
     1021 ttgcctggga actggacata taattactct tctgtgctaa aggaacgttc tgaaatgttt
     1081 aagtatgcag agatgttgat ggcggaagaa gataataaag tatgtgaact tatttttaaa
     1141 caacaagata atttgatttt aaaaataaat gatagatttc ccagaataat tataaagaaa
     1201 taccgaacat
//
LOCUS       DAJVSY010000328         1202 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.332, whole genome shotgun sequence.
ACCESSION   DAJVSY010000328 DAJVSY010000000
VERSION     DAJVSY010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1202)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1202)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1202
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.332"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..239
                     /locus_tag="OQQ19_004274"
     CDS             <1..239
                     /locus_tag="OQQ19_004274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HCS1805652.1"
                     /translation="AQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTD
                     KWQRRTHSLWRHQAWHASAFTGIYNDLVAASTFV"
     gene            176..778
                     /locus_tag="OQQ19_004275"
     CDS             176..778
                     /locus_tag="OQQ19_004275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000090847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HCS1805653.1"
                     /translation="MARICLYGDLQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLNE
                     GWYQVRIAGRDAGENELSARLNEPLANGAVIHIVPRLAGAKSGGVFQAVLGAALIATA
                     IWMPGISIAFSNILFSMGAAMTLGGVAQMLAPKPKTPRTQTTDNGKQNTYFSSLDNMV
                     AQGNVLPVLYGEMRVGSRVASQEISTADEGDGGQVVVIGR"
     gene            851..1189
                     /locus_tag="OQQ19_004276"
     CDS             851..1189
                     /locus_tag="OQQ19_004276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001332187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805654.1"
                     /translation="MNKTILFCTIIALTGCKSLDYVKSGKPVMEGNSLKNIDELSGCI
                     SRQWAGNGTPITSLPIENGVSLLVPQAMGGYDVVLDIKKAGNGSSFTLYERVPALTPK
                     IFADSVNACK"
BASE COUNT          306 a          264 c          317 g          315 t
ORIGIN      
        1 cggcgcagcc gggcgatgtg ctgctgtgct gttttggttc atcggtgccg aatcatgccg
       61 ccatttactg tggtgacggc gagctgctgc accatattcc tgaacaactg agcaaacgag
      121 agaggtacac cgacaaatgg cagcgacgca cacactccct ctggcgtcac caggcatggc
      181 acgcatctgc ctttacgggg atttacaacg atttggtcgc cgcatcgacc ttcgtgtgaa
      241 aacgggggcc gaagccatcc gggcgctggc cacacagctc ccggcgtttc gccagaaact
      301 gaatgagggc tggtatcagg tgcgcattgc cgggcgtgat gcaggcgaaa atgaattatc
      361 tgcccgtctt aatgagccgc tggcaaatgg tgccgtgatc cacatcgtac cgcgtctggc
      421 gggtgccaaa agtggtggtg tttttcaggc agtgctgggt gcggcgctga ttgctacggc
      481 aatctggatg ccaggaatca gtatcgcttt cagtaacatt ctcttttcta tgggggcagc
      541 gatgacgctt ggtggtgtcg cacagatgct ggcccctaaa cccaaaactc cacgtacaca
      601 gacaacggat aacggcaaac agaacaccta tttctcctca ctggataaca tggttgccca
      661 gggcaatgtc ctgcctgttc tgtacggtga aatgcgcgtg gggtcacgtg tggcatctca
      721 ggagatcagc acggcagatg aaggggatgg tggtcaggtt gtggtaattg ggcggtaata
      781 ttatttactc atgttctaac tgatttaata tttatatcga acactgataa ttattctatt
      841 ggttagctat atgaacaaaa cgattttatt ctgcacgatt attgccttaa caggatgtaa
      901 atctttggat tacgtaaaat ccggaaaacc tgtaatggaa ggtaattcat taaaaaatat
      961 tgatgaattg tcaggctgca tatccagaca atgggctggt aatggaacac ctataacatc
     1021 ccttcctatt gagaatgggg taagcctttt agttccacag gctatggggg gatatgatgt
     1081 tgtgcttgat atcaaaaaag caggaaatgg cagtagtttt actctttatg aacgtgtacc
     1141 agcattaacg ccaaaaattt ttgctgatag tgttaatgca tgtaaataat agttaatcct
     1201 gc
//
LOCUS       DAJVSY010000329         1199 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.333, whole genome shotgun sequence.
ACCESSION   DAJVSY010000329 DAJVSY010000000
VERSION     DAJVSY010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1199)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1199)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1199
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.333"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..755)
                     /gene="ipaH4.5"
                     /locus_tag="OQQ19_004277"
     CDS             complement(<1..755)
                     /gene="ipaH4.5"
                     /locus_tag="OQQ19_004277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH4.5"
                     /protein_id="HCS1805655.1"
                     /translation="MKPINNHSFFRSLCGLSCISRLSVEEQCTRDYHRIWDDWAREGT
                     TTENRIQAVRLLKICLDTREPVLNLSLLKLRSLPPLPLHIRELNISNNELISLPENSP
                     LLTELHVNGNNLNILPTLPSQLIKLNISFNRNLSCLPSLPPYLQSLSARFNSLETLPE
                     LPSTLTILRIEGNRLTVLPELPHRLQELFVSGNRLQELPEFPQRLKYLKVGENQLRRL
                     SRLPQELLTLDVSNNLLTSLPENIITLPICTNV"
BASE COUNT          341 a          214 c          259 g          385 t
ORIGIN      
        1 ttaacattcg tacaaatggg caatgtgatt atattttcgg gtaatgaagt tagtaggtta
       61 ttggaaacat ccagtgtcaa tagttcttgc ggtaatctgg ataatctgcg tagttgattt
      121 tcacctacct tcaaatattt taagcgctga ggaaattctg gtagttcctg tagtctgttg
      181 ccggaaacaa agagttcttg tagtctatga ggcaattcag gcaagacagt aaggcgatta
      241 ccttcaatac gtaatattgt tagcgttgat ggaagctctg gtaacgtctc cagactatta
      301 aaacgtgccg agagtgattg taaatatggt ggtaatgatg gcagacatga caaatttcga
      361 ttgaatgaaa tattaagctt aatcagttga gatggaagtg tcgggagtat attcaagttg
      421 ttaccattta catgaagttc tgtcaaaagc ggagaatttt caggtaggga gattaactca
      481 ttgttggaaa tattaagttc acgtatatgc aaagggagtg gtggtaaaga acgtagtttc
      541 agtaagctta aattgagaac aggctcccgg gtatccagac atattttcaa taatcgaacc
      601 gcctggatgc gattttctgt tgttgttcct tccctagccc agtcatccca gatgcggtgg
      661 taatctctgg tacactgttc ttctaccgat aaacgagata tacatgataa gccacaaagg
      721 gaacgaaaaa aagaatgatt gttgatcggt ttcatttatt aacccctcac tattcatatc
      781 ttggtctatt aatgcaaata aaacgagaaa gtctttaaaa aaacaatcct agagctttat
      841 cggcgttttc attccagctg gaggaatatg ttcctgtctt tccagtaacc gtcgattgtt
      901 atatcagtct acccatgtta atgtgaccag ttctactttc atccagtttg gattgatctt
      961 tatcccctat attttcaaac aatttttatc atttaactca ttactgtctc gatattccca
     1021 tagcaaacga tctggttggt tagcccctca aaaaagtcag ttgcacgccg taaatccctg
     1081 ccggtattga gcgaggattt acgggttgtt gttaaggtcc gtaatcgggt cacagttttt
     1141 ccggagtcaa tccggtctgc ggtttatgct tatgcgacgt gattatgaat ggtgcagtc
//
LOCUS       DAJVSY010000330         1198 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.334, whole genome shotgun sequence.
ACCESSION   DAJVSY010000330 DAJVSY010000000
VERSION     DAJVSY010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1198
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.334"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            59..1069
                     /locus_tag="OQQ19_004278"
     CDS             59..1069
                     /locus_tag="OQQ19_004278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001494590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine dehydrogenase"
                     /protein_id="HCS1805656.1"
                     /translation="MDKITQVLFSDIGKVTTQYVEVPHQELKPHEVRIAPVLYGICGS
                     DLHVLKGGHPFAKPPVVPGHEIAARVTEVGSDVKNVQPGDHVVVDPIMACMECRACKA
                     GRFNLCEPPQVASFRAPGFARSQHIVPARNCHVAPASLPLKVLAFAEPAACARHCVNR
                     MPKASLESVLVIGAGTIGLSIVQALRIMGAGKITVIEPDAAKRALALKLGAAEVWAPG
                     ELAADVRFTGAIDVVAAQATLNDACTRVYAGGTVVCMGVPSGPREIPLPMMQRFERDL
                     LNSGMYIPEDFDAVIEWLADGRFDTSELVTDLFAIEDAAAAFERAQQNDSIKVMLQFA
                     PE"
BASE COUNT          283 a          293 c          325 g          297 t
ORIGIN      
        1 tcgatgaagg tatcgcgcaa cgctaatccc ctatggatat cgattctgga gaataacaat
       61 ggataaaatt acccaggttt tattttcaga tattgggaaa gtcaccactc aatatgttga
      121 agtaccacac caggaactta aaccgcacga agtgcggatt gcgcctgtgt tgtatgggat
      181 atgcggttcg gatctgcatg ttctgaaagg cggtcatccg tttgccaaac cacctgtcgt
      241 ccccggtcat gaaattgcag cgcgcgttac ggaagttggc agcgacgtta aaaatgtaca
      301 gccgggcgat catgttgtgg tcgatcccat catggcttgc atggaatgcc gagcctgcaa
      361 agcaggacgt tttaatcttt gtgaaccacc gcaggttgct agttttcgcg caccgggctt
      421 tgctcgctca caacacattg ttcctgcgcg taattgccat gtcgcaccag cctctttacc
      481 gctaaaagtg ttggcctttg ccgaaccggc ggcttgtgcc cgtcactgcg ttaaccgaat
      541 gccgaaagct tctctggaaa gcgtactggt aattggtgcc ggaacgatag gcttatccat
      601 cgtgcaggca ctgcgcatta tgggggcagg taagattacc gtgattgaac ctgacgctgc
      661 caaacgcgcg ctggcgttaa agctgggcgc agcagaagtt tgggcaccag gtgagctggc
      721 cgcagatgtg cgatttacgg gggcgattga tgtcgttgca gcgcaggcca cgcttaacga
      781 tgcatgtacc cgtgtatatg ccggaggcac cgtcgtgtgc atgggcgtac caagtgggcc
      841 gcgtgaaata ccattaccga tgatgcaacg tttcgagcgt gacttgctca actctggcat
      901 gtacatccct gaagatttcg atgctgttat cgaatggctg gcggatgggc ggtttgatac
      961 cagtgaactg gttaccgatt tatttgccat tgaggatgca gcggcggcat ttgaacgcgc
     1021 gcagcaaaat gactccataa aggtcatgct gcaatttgcg ccggaatgat tttctaaatc
     1081 tctgtctggc gctgcgtcac gtcagcgcca ccctacaaca attaaaaagg acactgcgat
     1141 gagtcaaatc accagtcctg caacttattc aattagtcgg ccacaggacg taattgat
//
LOCUS       DAJVSY010000331         1193 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.335, whole genome shotgun sequence.
ACCESSION   DAJVSY010000331 DAJVSY010000000
VERSION     DAJVSY010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1193)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1193)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1193
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.335"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..77)
                     /locus_tag="OQQ19_004279"
     CDS             complement(<1..77)
                     /locus_tag="OQQ19_004279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HCS1805657.1"
                     /translation="MSKVGINGFGRIGRLVLRRLLEVKS"
     gene            266..796
                     /gene="cybB"
                     /locus_tag="OQQ19_004280"
     CDS             266..796
                     /gene="cybB"
                     /locus_tag="OQQ19_004280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415935.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b561"
                     /protein_id="HCS1805658.1"
                     /translation="MENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINMI
                     HVSCGISILVLMVVRLLLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGL
                     VMMYNRGNPWFAFGLTMPYASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHY
                     FWKDNTLLRMMPRKRS"
     gene            1041..>1193
                     /locus_tag="OQQ19_004281"
     CDS             1041..>1193
                     /locus_tag="OQQ19_004281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805659.1"
                     /translation="MKKLALILFMGTLVSFYADAGRKPCSGSKGGISHCTAGGKFVCN
                     DGSISAS"
BASE COUNT          319 a          258 c          270 g          346 t
ORIGIN      
        1 ttgcttttga cttcaagtaa tcgacgcaac accagtcgac cgatacgacc aaaaccgtta
       61 ataccaacct tactcatggt tttctcctgt caggaacgtt cggatgaaaa ttgatccttt
      121 ccaggcttag cccaggattg tgggatgggc aatctccatt cttacagtga aacgtaacgt
      181 actgaaaacg ggtgaacaat atttaatgaa attttgagaa aagcccgtta tgttaacgga
      241 aaattatgtt aaagcaggaa atgttatgga aaataaatac tcaaggttac aaatcagcat
      301 tcactggctg gtctttttgc tggttatcgc agcgtattgc gcaatggagt ttcggggttt
      361 cttcccacgt agcgatcggc cactcatcaa catgattcat gtttcctgcg gcatctcaat
      421 tctcgtgctg atggtcgttc gtcttttgtt aaggctgaaa tacccaaccc cgccgattat
      481 acctaagcca aaaccgatga tgacgggact ggcgcatttg ggacatttgg tgatttatct
      541 cctgtttatt gcgctgccag tgattggttt ggtgatgatg tataaccggg gcaacccgtg
      601 gtttgcgttt ggtttgacga tgccttacgc ttcagaggcc aatttcgaac gggttgatag
      661 cttaaagtcg tggcatgaaa cgctggcgaa tctgggatat tttgtcatcg ggttgcacgc
      721 tgcggctgca ctggcacacc actatttctg gaaggacaac acacttctac gcatgatgcc
      781 gcgtaaacgt tcctgaagga tatttaaaga aaacgcctgt actaaaaccg acccgtggta
      841 caggcgaaga atacgggtct acatcggaag cgcctattat atttatttgt atgacaaata
      901 aaaccataat ccttgcccat acgtccatct ggcttatttt taatcaattc acccgatctt
      961 tgatctcatc aacggtatca aaataaacca gcgtataacg ttcaaatcga acataagatt
     1021 cgataaacca tggaggttat atgaaaaaac tggcacttat tttgtttatg ggaacgcttg
     1081 tttcctttta tgccgatgcc gggcgcaaac cctgttctgg ttcgaaaggg gggatctcac
     1141 actgtacggc aggcggcaaa tttgtctgta atgatggttc tattagtgcc tcg
//
LOCUS       DAJVSY010000332         1160 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.336, whole genome shotgun sequence.
ACCESSION   DAJVSY010000332 DAJVSY010000000
VERSION     DAJVSY010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1160
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.336"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..925
                     /locus_tag="OQQ19_004282"
     CDS             <1..925
                     /locus_tag="OQQ19_004282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000878026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS110-like element ISEc11 family transposase"
                     /protein_id="HCS1805660.1"
                     /translation="RRQDFLTFFGNREPCLIGMEACGGSQHWARELTKLGHKVRLLQA
                     RFVKAFVMGNKNDVMDARAIWMAVQQPGKEIAVKTEEQQSVLVLHRTRMQLVKFRTAQ
                     INALHGTLLEFGETIHKGRAAMEREFPEALERMKERLPPYLIMVLENQYNRLNELDSL
                     IEDIEKQLTSVARQNETCKRLLDIPGVGPLIATAAVATMGEASAFKSGREFAAYVGLV
                     PKQTGSGGKVRLLGISKRGDTYLRTLFIHGARAVALVAKEPGPWITELKKRRPASVAI
                     VAMANKLARTVWAITAHDRKYDRNHVSIRPY"
BASE COUNT          324 a          262 c          333 g          241 t
ORIGIN      
        1 gcgtagacag gattttctga cgttcttcgg caaccgtgag ccatgcctga ttggtatgga
       61 ggcctgtgga ggttctcagc actgggcacg ggaactgaca aaacttggtc ataaagtccg
      121 gttgttgcag gcccgcttcg ttaaggcatt cgtcatgggc aataagaatg atgtgatgga
      181 tgcccgggct atctggatgg cggttcagca gccgggtaaa gaaatcgccg taaaaacaga
      241 agaacagcag tcggtactgg ttctgcaccg tacccgcatg caactggtga agttccggac
      301 cgcacaaatt aatgccctgc acgggacgtt actggagttt ggtgaaacca tccacaaagg
      361 ccgggcagcg atggagcggg agttccccga agcactggaa cggatgaaag agagactgcc
      421 accgtatctc attatggttc tggaaaacca gtacaaccga ctgaatgagc tggactcact
      481 gatagaggat attgaaaaac agcttaccag cgtggcgagg cagaatgaaa cctgtaagcg
      541 gttgctggat attcctggcg ttggaccact tattgcgacg gcagcggtgg ccaccatggg
      601 ggaagcatca gcgtttaaat cggggcgaga gttcgccgca tatgttggtc tggttccaaa
      661 acaaactggc tccggaggga aagtacgtct gctggggata agcaaacgtg gtgacactta
      721 tctcaggaca ttatttatcc acggtgcaag agcggtggca ttagtagcta aagagcctgg
      781 cccgtggata accgaactga aaaaacgtcg tccagccagt gtggcaatcg tcgccatggc
      841 aaacaagctg gcacgaacag tatgggcgat aaccgcccat gaccgtaagt atgacaggaa
      901 ccacgtcagt atcagaccat attaatcgct gataccatta aacaatgaac tcttaacaaa
      961 agggtgaatg ctgaaaggtt gctatggcgg ccagagtgat gacaaagaca ggtaagaccg
     1021 tgactcacta aacctgaaca gtattttggg cttgaagtcc gccgtgaaaa taaggggtga
     1081 gtcggcgaat tacatagggg ctcgcagcgt tacggctgca ataaagccgg atataaagct
     1141 gcaacctacc cgtcatgtca
//
LOCUS       DAJVSY010000333         1158 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.337, whole genome shotgun sequence.
ACCESSION   DAJVSY010000333 DAJVSY010000000
VERSION     DAJVSY010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1158)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1158)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1158
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.337"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(316..>1158)
                     /locus_tag="OQQ19_004283"
     CDS             complement(316..>1158)
                     /locus_tag="OQQ19_004283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416329.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HCS1805661.1"
                     /translation="LLVGYIAWLATAYRMSFSREINLGLAQHEFELFCQPLLNARSQQ
                     CIGVEILLRWNNPRQGRISPDVFIPIAEEHHLIVPLTRYVMAETIRQRHVFPMSSQFH
                     VGINVAPSHFRRGVLIKDLNQYWFSAHPIQQLILEITERDALLDVDYRIARELHRKNV
                     KLAIDDFGTGNSSFSWLETLRPDVLKIDKSFTAAIGSDAVNSTVTDIIIALGQRLNIE
                     LVAEGVETQEQAKYLRRHGVHILQGYLYAQPMPLRDFPKCLAGSQPPPARHNGHITPI
                     MPLR"
BASE COUNT          320 a          292 c          288 g          258 t
ORIGIN      
        1 ccgaatagca atgtctgtcg cacaacaacc acaatgtcac aaataaaaaa tgagaataac
       61 cagttccctg aaggcgacgt agcccggtac aagagtaact cacgttagcg cttggcgacg
      121 gcggaacaaa gctgattcgc gacgtaagaa agtggcaggc tcatatgacg gacctctgta
      181 atgcggtatc caacccgcga atatcagcgt gattcaccgt cggatttact gctacgtcgc
      241 cctcagggaa ttaaacctaa aaagaaaatc gtcaaaatta gagattccgg tttgacacgg
      301 aaagtcatat cagcgttaac gtaacggcat aatgggcgtg atatgtccat tatgccgggc
      361 gggcggcggt tggctgcccg ccaggcattt gggaaaatcg cgtagcggca tcggctgtgc
      421 gtacaaatac ccttgcaaaa tatgcacgcc atgacggcgc aaatacttcg cctgttcttg
      481 cgtttccacg ccctccgcca ccagttcaat attcagtctt tgccccagcg cgatgatgat
      541 atcggtcacc gtcgagttaa ccgcgtcaga acctatagct gcggtaaatg acttatcaat
      601 tttcagcacg tcaggacgta atgtttcaag ccaggaaaat gaactgttgc cggtgccgaa
      661 gtcatcaatc gccagtttga cgtttttacg atgtagctcg cgggcaatcc gataatcaac
      721 atccagtaag gcatcgcgtt cggtgatttc gaggatcagt tgctgaatcg ggtgagcgct
      781 aaaccagtac tgattgagat cttttatcag cacaccacgg cgaaaatggc tgggtgcgac
      841 gttaatgcca acatgaaact gactactcat cgggaaaaca tggcgctgac gaatggtttc
      901 tgccatcaca tagcgggtca gtggcacaat taaatgatgt tcttccgcga taggaataaa
      961 cacatccggt gaaatccggc cctgacgcgg attgttccag cgcagcaaaa tctctacacc
     1021 aatacattgc tggctgcgcg cattaagcaa aggctgacag aacaattcga actcatgttg
     1081 cgccaggccc agattgattt cgcgggaaaa gctcatccgg taagcggtcg ccagccaggc
     1141 gatgtagccc accagtaa
//
LOCUS       DAJVSY010000334         1157 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.338, whole genome shotgun sequence.
ACCESSION   DAJVSY010000334 DAJVSY010000000
VERSION     DAJVSY010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1157)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1157)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1157
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.338"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(1..263)
                     /locus_tag="OQQ19_004284"
                     /pseudo
     CDS             complement(1..263)
                     /locus_tag="OQQ19_004284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611134.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(378..1016)
                     /gene="ospI"
                     /locus_tag="OQQ19_004285"
     CDS             complement(378..1016)
                     /gene="ospI"
                     /locus_tag="OQQ19_004285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector OspI"
                     /protein_id="HCS1805662.1"
                     /translation="MINGVSLQGTAGYEAHIEEGNVNVKKLLESLNSKSLGDMDKDSE
                     LAATLQKMINPSGGDGNCSGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQI
                     DSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLD
                     VQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC"
BASE COUNT          340 a          284 c          175 g          358 t
ORIGIN      
        1 agcaagcgct gtaactcttt tatttgtttt atagcggcag ccagttctga ggcaggaacg
       61 acatcctctc cggcagcaat agcagtgaga cttccttcca gatattattt tttccactta
      121 agcaacaggc tgggctgaat accatgcaaa cgcgccacat gggacaccgt catgccaggc
      181 tccattgtct gctgaataat ggcaattttt tcctgaggag ttttacgttt acgaagctcc
      241 agccccagca aagttccagt catctcaaaa ttagaactag tgttagacat atatccaagc
      301 ctatctctta ttttaagata catccactgt ctggcgtttc aaggggccgg ctcaaatcta
      361 tgtacaggct ctcagcatca gcaaagcctc ttactcttcc aactactact gttagcatag
      421 tgatcaaatt cctgatcaga tacatgaatt acctgaaccg aactattttc atctacaaat
      481 gcatctggcg atttttctac aggatcataa agattaaatc cctttcctgt ttgaacatcc
      541 aaaaacataa ttttttcacc atcgttaaat ccagctatcc aatgagtggc ctgttcaata
      601 gaaatcatta ctacacttcc ttttgaagtg ttttgtaaaa tattttctgc aatacgctca
      661 cgaaatttac tataagtttc attaggatgt gacactatgc cttcactatc aatttgctct
      721 aaatgcctat gaaaaaatcc ggtcatatac tctgatattt cattaggtac gggagcctct
      781 cttactccat accctaacat agccatacaa gcatgaagcg cacaccctga acagttacca
      841 tccccaccag acggatttat cattttctgt aaagtcgctg ccaattcaga atctttatcc
      901 atatcaccaa gacttttaga gtttaaagat tccagcaatt ttttaacatt tacatttccc
      961 tcctctatat gtgcctcata tccagcagtt ccctgtaacg acaccccatt aatcatattg
     1021 tatcctgaca gtatatatac tcactatatt ttcttcataa caaatatccc tctgatatga
     1081 caacaaaaaa cggagccgga ttcctgtttt tgtgaactgc agctattcga gtctaaaaag
     1141 tgatccactt accacca
//
LOCUS       DAJVSY010000335         1115 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.339, whole genome shotgun sequence.
ACCESSION   DAJVSY010000335 DAJVSY010000000
VERSION     DAJVSY010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.339"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            1..161
                     /locus_tag="OQQ19_004286"
                     /pseudo
     CDS             1..161
                     /locus_tag="OQQ19_004286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611997.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            178..696
                     /locus_tag="OQQ19_004287"
                     /pseudo
     CDS             178..696
                     /locus_tag="OQQ19_004287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          324 a          260 c          245 g          286 t
ORIGIN      
        1 gtgacagact ggcacgtctt cgtaaggagc tgaggctgca ctgtaagcag aaacgcaagt
       61 tcagggcgac cacaaactct gaccacaatc tgccggttac gccgaatctg ctgaatcaga
      121 actttacgcc cacagcacct aatcaggtct gggtcgcaga ttcagttgtc caggccttcc
      181 gaaatcaacc gactgaaggc gctggtcgcg aaactgcagc gtatgcagtt cggtaaaagc
      241 tcagaaaaac ttcgcgcaaa aaccgaacgg cggatacagg aagcacagga gcgagtcagc
      301 gcacttcagg aggaaatggc ggaaacactg ggtgagcaat atgacccggt actgccatct
      361 tccctgcgcc agtcttcagc ccgtaaaccg ttaccagcct cacttccccg tgccccccgg
      421 gtcatccggc cggaagagga atgctgtccg gcctgtggtg gtgaactcag tccactggga
      481 tgtgatgtgt cagagcagct ggagcttatc agcagcgcct ttaaggttat cgaaaaacaa
      541 cgccctaaac tggcctgtcg ccggtgcgac catatcgtgc aggcaccggt gccttcaaaa
      601 cccattgcac gcagttatgc cggagcgggg cttctggccc atgttgttac cggaaagtat
      661 gcagaccatc tgccattata ccgccaaagt gatctactat tccacacagc tatttagctc
      721 tctttttgtt gagctcccat gattctttca tttattgtta ctaattattt tatgttatca
      781 tgatgttaga acacgctctg ctctgtgtct ctattttatc tatcatattc tgaggattaa
      841 ctacataaca aggcgcaaga tatatatcca aaaacaaata ataccgttgc aataattcct
      901 ttcagtaaag gaggtgtgat taatttcagg ggatttcaga gtgaaaattg tacaacatat
      961 tgaaatatgt tcatttcgtt ataatacaca caagaaaata ttaagttaga taatatattc
     1021 taaataacca tagataaaaa tgcacataat ggggaatatt ttatgaaaat acctgaagca
     1081 gtaaatcata ttaatgttca gaataatatt gatct
//
LOCUS       DAJVSY010000336         1112 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.340, whole genome shotgun sequence.
ACCESSION   DAJVSY010000336 DAJVSY010000000
VERSION     DAJVSY010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1112)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1112)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1112
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.340"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..803)
                     /locus_tag="OQQ19_004288"
     CDS             complement(<1..803)
                     /locus_tag="OQQ19_004288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HCS1805663.1"
                     /translation="MLPTNNNHRLISNSFSTYSIDTSRAYENYLTHWTEWKNNRIQEE
                     QRDIAFQRLVSCLQNQETNLDLSELGLTTLPEIPPGIKSINISKNNLSLISPLPASLT
                     QLNVSYNRLIELPALPQGLKLLNASHNQLITLPTLPISLKELHVSNNQLCSLPVLPEL
                     LETLDVSCNGLAVLPPLPFSLQEISAIGNLLSELPPLPHNIHSIWAIDNMLTDIPYLP
                     ENLRNGYFDINQISHIPESILNLRNECSIDISDNPLSSHALQSLQRLTSS"
BASE COUNT          319 a          157 c          264 g          372 t
ORIGIN      
        1 gaagaggtta atctttgcag ggattgcaga gcatgggatg acaatgggtt atcactaata
       61 tctattgaac attcattcct cagattaaga atgctttccg ggatatgact tatctgattt
      121 atgtcaaaat aaccgttcct taaattttcc ggcaggtatg gaatatcggt taacatattg
      181 tcgattgccc atatggagtg aatgttgtga ggtagagggg ggagttcact aagaagattc
      241 cctattgcgc taatctcttg taaagaaaat ggtaaaggtg gtaaaactgc cagcccatta
      301 catgatacat ctaatgtttc cagtagttct ggtaaaacag gaagagaaca taattgatta
      361 tttgagacat gaagctcctt caaagatatg gggagtgtgg gtagtgtgat tagttgattg
      421 tgggacgcat tcaataattt aagtccttga ggcaaagcag gcagttcaat aagtctgtta
      481 tagctgacat taagctgtgt aagggacgca ggcaatgggg agattaagct taaattattt
      541 ttacttatat taattgattt aattcccggg gggatttcag gtaatgttgt caggcctaat
      601 tcagacaagt ctaggttcgt ctcttggttt tgtagacatg atactagtcg ctgaaaagcg
      661 atgtctcgtt gttcttcttg tatgcggtta tttttccatt cagtccaatg ggttagataa
      721 ttttcatatg cgcggctagt gtcgattgaa taagtggaga acgaatttga aattaatctg
      781 tgattgttat ttgtcgggag cataaatatc agggcgtatt ctttatgttg agaggtgttg
      841 gattcttttt tatctgcttt gcaatgttat tggttccctt cagcagtaga caggaacttc
      901 tggaggaggc ggatatatag tttgtgtaag catattaact ccatatgtta tatattgaag
      961 aacttctgct ttacactatc ctaaactgga tcggtttaat gtaaaaaaac gatacttttt
     1021 gggggagggg gcaatttttc cttaaggtat gaaaaaagga gctgaagcta tataatagct
     1081 attaatgcca ctggtatcag tgaatcatgt at
//
LOCUS       DAJVSY010000337         1092 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.341, whole genome shotgun sequence.
ACCESSION   DAJVSY010000337 DAJVSY010000000
VERSION     DAJVSY010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1092)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1092)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1092
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.341"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(198..464)
                     /locus_tag="OQQ19_004289"
     CDS             complement(198..464)
                     /locus_tag="OQQ19_004289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805664.1"
                     /translation="MLTQTIFPCLPQKQENIILEVSNPVLLSSTVTTDGYTVFNKKAA
                     IYELQIPATNRTKTLKFTATEMQWLTKINEVGIVEKQSQRHSNI"
     gene            complement(646..1044)
                     /locus_tag="OQQ19_004290"
                     /pseudo
     CDS             complement(646..1044)
                     /locus_tag="OQQ19_004290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612066.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
BASE COUNT          282 a          224 c          225 g          361 t
ORIGIN      
        1 cgtccctgca ctcgaataat ggtgaagaaa gcatgatgaa tatatcacga taacgttcag
       61 tatgtatcga ggatagatgg agttactcct ctctgaaata gaattactgc tctacttttt
      121 ctgtttccag aaattattag taacaaaccc tgatatattc ttttgaaaat ggagcttaaa
      181 cgagtctgaa attaacttca gatattagaa tgccgttggc tttgtttttc aacaattcct
      241 acttcattta tctttgtcaa ccattgcatt tctgtagcag tgaatttcaa cgttttcgtc
      301 cggttggtag caggtatttg taattcgtat atagctgctt ttttattgaa aacagtatat
      361 ccatctgtag taacagtaga agataataat acaggatttg acacttcaag gatgatattt
      421 tcttgttttt gtggaaggca agggaatata gtttgtgtaa gcatattgct tccttatgtt
      481 atattttagt aaagaattta ttttttacat tatagtcggc taaatgaagt ttactgtaaa
      541 aaaacgatac ttttttcgta agcgatgaga tgtggagcca gaaaaatggc tgcgttacgt
      601 cattgaactg tccttgaccc acgatattca gacagtcgtt gtatcttaag ttgacattac
      661 ccgctgacgt cgatattccc ttggtgagag ataacccaac gcactatgcg gatggttttc
      721 attgtaatgc tcgatcgcca ctgcaaggtt atgcaatgcc attcttggtt tcggcatgaa
      781 cgcgatgcag tcttccttca tcgttttcac gaaccgttct gctattccat tactctgagg
      841 gctactgact gccgtcgtgc agggctccag attcaactct ctggcgaact gccgtgtttc
      901 atgagccgta taagccgaac cgttatcggc cactggattg gccgttccgg tcctttatcg
      961 ccatatcgct gacatgacat cctgcaccgt tgctttgtca taatctcccg tgcctgctgc
     1021 ccagtctatg gcttcacgat cgcaatatgg aacgtaacgc tgtcatcggg agaatcgtca
     1081 atgcggcatt cg
//
LOCUS       DAJVSY010000338         1057 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.342, whole genome shotgun sequence.
ACCESSION   DAJVSY010000338 DAJVSY010000000
VERSION     DAJVSY010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1057)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1057)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1057
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.342"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            1..1057
                     /locus_tag="OQQ19_004291"
                     /pseudo
     CDS             1..1057
                     /locus_tag="OQQ19_004291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558238.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     misc_feature    243..359
                     /locus_tag="OQQ19_004291"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01497"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="AL1L pseudoknot; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /pseudo
                     /db_xref="RFAM:RF01497"
BASE COUNT          249 a          254 c          325 g          229 t
ORIGIN      
        1 agggcgattc gtatggttct ggaaagtcag ggcgaatatg actcacagtg ggcggcaatt
       61 tgttccattg ccccaaagat tggctgtaca ccggagactc tgcgtgtctg ggtacgccag
      121 catgagcggg ataccggagg cggtgatggc gggctcacca ccgctgaacg tcagcgtctg
      181 aaagagctgg aacgtgaaaa tcgtgaactg cgccgcagta acgatatcct tcgccaggct
      241 tccgcttatt ttgcgaaggc ggagttcgac cgcctctgga aaaagtgatg ccactgctgg
      301 ataagctgcg taagctgtac ggggtcggac cggtatgcag tgaactacat attgccccgt
      361 caacgtatta ccactgtcag caacagcgac atcatcctga taaacgcagt gcccgtgcgc
      421 agcgcgatga ctggctgaag aaagagatac tgcgcgtata cgatgggaat catcaggtat
      481 acggtgtgcg taaagtctgg cgtcagttgt tacgggaagg tatcagagtg gccagatgca
      541 ctgtggcacg tctcatggcg gttatgggac ttgccggtgt tctccggggt aaaaaggtcc
      601 gtacgaccat cagccggaaa gccgttgccg caggcgaccg cgtaaaccgt cagttcgtgg
      661 cagaacgacc tgaccagctg tgggtggctg attttactta cgtcagcaca tggcagggct
      721 tcgtctatgt ggcgttcatt attgatgtgt ttgccggata catcgtgggg tggcgggtct
      781 catcgtccat ggaaacgaca ttcgtgctgg atgctctgga gcaggcgtta tgggcccgtc
      841 gaccgtccgg cacggtccat cacagtgata aaggttctca gtatgtatcg ctggcctaca
      901 cacagcggct taaggaagcc ggattactgg catcaacagg aagtacaggc gactcgtatg
      961 acaacgcgat ggcggagagc atcaatggtc tttacaaagc ggaggtaata caccgtaaga
     1021 gctggaaaaa ccgtgcagaa gtggaactgg ccacact
//
LOCUS       DAJVSY010000339         1056 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.343, whole genome shotgun sequence.
ACCESSION   DAJVSY010000339 DAJVSY010000000
VERSION     DAJVSY010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1056
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.343"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..1033
                     /locus_tag="OQQ19_004292"
     rRNA            <1..1033
                     /locus_tag="OQQ19_004292"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          261 a          247 c          330 g          218 t
ORIGIN      
        1 actccgtgcc agcagccgcg gtaatacgga gggtgcaagc gttaatcgga attactgggc
       61 gtaaagcgca cgcaggcggt ttgttaagtc agatgtgaaa tccccgggct caacctggga
      121 actgcatctg atactggcaa gcttgagtct cgtagagggg ggtagaattc caggtgtagc
      181 ggtgaaatgc gtagagatct ggaggaatac cggtggcgaa ggcggccccc tggacgaaga
      241 ctgacgctca ggtgcgaaag cgtggggagc aaacaggatt agataccctg gtagtccacg
      301 ccgtaaacga tgtcgacttg gaggttgtgc ccttgaggcg tggcttccgg agctaacgcg
      361 ttaagtcgac cgcctgggga gtacggccgc aaggttaaaa ctcaaatgaa ttgacggggg
      421 cccgcacaag cggtggagca tgtggtttaa ttcgatgcaa cgcgaagaac cttacctggt
      481 cttgacatcc acggaagttt tcagagatga gaatgtgcct tcgggaaccg tgagacaggt
      541 gctgcatggc tgtcgtcagc tcgtgttgtg aaatgttggg ttaagtcccg caacgagcgc
      601 aacccttatc ctttgttgcc agcggtccgg ccgggaactc aaaggagact gccagtgata
      661 aactggagga aggtggggac gacgtcaagt catcatggcc cttacgacca gggctacaca
      721 cgtgctacaa tggcgcatac aaagagaagc gacctcgcga gagcaagcgg acctcataaa
      781 gtgcgtcgta gtccggattg gagtctgcaa ctcgactcca tgaagtcgga atcgctagta
      841 atcgtggatc agaatgccac ggtgaatacg ttcccgggcc ttgtacacac cgcccgtcac
      901 accatgggag tgggttgcaa aagaagtagg tagcttaacc ttcgggaggg cgcttaccac
      961 tttgtgattc atgactgggg tgaagtcgta acaaggtaac cgtaggggaa cctgcggttg
     1021 gatcacctcc ttaccttaaa gaagcgtact ttgcag
//
LOCUS       DAJVSY010000340         1050 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.344, whole genome shotgun sequence.
ACCESSION   DAJVSY010000340 DAJVSY010000000
VERSION     DAJVSY010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1050)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1050)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.344"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            264..1050
                     /locus_tag="OQQ19_004293"
                     /pseudo
     CDS             264..1050
                     /locus_tag="OQQ19_004293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226013.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
BASE COUNT          309 a          240 c          246 g          255 t
ORIGIN      
        1 acccttttgc ttttatatct gcgtctaaaa taaaaatgag ccgcaggtta accgcaaaag
       61 ttacatgctc acatagcaaa aagaatagcc aacttcatta tggcttcagt gagatgtatg
      121 gtcgtaggat ttcatacatt gacactggtt atacatacag taaaaatact ctctactgga
      181 gggcattttt tatggcagta cgaaaactca ccactgggaa atggctttgc gaatgttacc
      241 ccgccggacg aagtgggcgt cgtgtgcgta aacaattcgc caccaaaggc gaagcactgg
      301 cttttgagcg ccacacgatg gaagaaaccg aagcaaagcc ctggctgggt gaatcagtgg
      361 atcgtcgaac actgaaagac gtggttgagc tatggttcaa actacatggt aaatctctga
      421 cagctgggca gcatgtctat gacaaattgc tgttgatggt tgacgctctg ggcaatcctc
      481 ttgcaaccga tctcacctct aaaatgtttg cccactatcg agataaacgc ctgacaggcg
      541 ggatctactt cagcgagaaa tggaagaaag gagcaagccc ggtcaccatt aacctggagc
      601 aaagctatct aagtagtgtt tttagcgaac tatcccgtct gggcgaatgg tcgtatccga
      661 acccactgga gaacatgcga aaattcacca tcgcagaaaa agagatggca tggcttaccc
      721 atgagcagat tgttgaattg ctggctgatt gcaaacgtca ggacccaatt ctggcactgg
      781 tagttaagat atgcttaagc acaggcgcac gctagcgtga agccgtaaat cttacccgct
      841 cacaggtgac caaataccga attacctttg tcagaacgaa ggggaagaaa aacagaagca
      901 tccctatcag taaagagctt tacgaagaga tcatggcgct tgatgggttc aatttcttca
      961 cagactgcta ttttcaattt ttatccgtga tggaaaaaac gtctatcgtg ctccctcgcg
     1021 gtcaactcac acacgttctg cgccatacgt
//
LOCUS       DAJVSY010000341         1033 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.345, whole genome shotgun sequence.
ACCESSION   DAJVSY010000341 DAJVSY010000000
VERSION     DAJVSY010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1033)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1033)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1033
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.345"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>1033
                     /locus_tag="OQQ19_004294"
     CDS             <1..>1033
                     /locus_tag="OQQ19_004294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HCS1805665.1"
                     /translation="DIALPGPLPFILSRTYSSYRTKTPAPVGSLGPGWKMPADIRLQL
                     RDNTLILSDNGGRSLYFEHLFPGEDGYSRSESLWLVRGGVAKLDEGHRLAALWQALPE
                     ELRLSPHRYLATNSPQGPWWLLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGRTQTF
                     HREAAGEFSGEITGVTDGAGRHFQLVLTTQAQRAEEARQQAISGGTEPSAFPDTLPGY
                     TEYGRDNGIRLSAVWLTHDPEYPENLPAAPLVRYGWTPRGELAAVYDRSNTQVRSFTY
                     DDKYRGRMVAHRHTGRPEIRYRYDSDGRVTEQLNPAGLSYTYQYEKDRITITDSLNRR
                     EVLHTQGEAG"
BASE COUNT          203 a          322 c          337 g          171 t
ORIGIN      
        1 ccgacatcgc cctgcccggc ccgctgccgt tcatcctctc ccgcacctac agcagttacc
       61 ggacaaaaac gcccgcgccg gtggggagcc tcggccccgg ctggaaaatg cctgcggata
      121 tccgcttaca gctgcgcgat aacacactga tactcagtga taacggcggc agaagcctgt
      181 attttgagca cctgtttccc ggtgaggacg gttacagccg cagcgagtca ctgtggctgg
      241 tgcgcggcgg cgtggcgaaa ctggatgaag gtcaccggct ggccgcactc tggcaggcgc
      301 tgccggaaga actccgctta agtccgcatc gttatctggc gacaaacagt ccgcaggggc
      361 cgtggtggct gctcggctgg tgtgagcggg tgccggaagc ggatgaggtg ctgcctgcgc
      421 cgctgccgcc gtaccgggta ctgaccgggc tggtggaccg cttcgggcgc acacagacgt
      481 tccaccgcga agccgccggt gaattcagcg gcgaaatcac cggcgtgacg gatggtgccg
      541 ggcgtcactt ccaactggta ctgaccacgc aggcgcagcg ggcagaagaa gcccggcagc
      601 aggccatttc cggcgggacg gaaccgtccg cttttcctga taccctgccg ggttacaccg
      661 aatatggccg ggacaacggc atccgtctgt ctgccgtgtg gctgacgcac gacccggaat
      721 acccggagaa tttacctgcc gcgccgctgg tgcgctatgg ctggacgccg cgcggcgaac
      781 tggcggcagt gtatgaccgc agcaatacac aggtgcgtag ctttacttac gatgataaat
      841 accggggccg gatggtggcg caccgtcaca cgggccggcc ggaaatccgt taccgttacg
      901 acagcgacgg gcgggtgaca gaacagctta acccggcagg cttaagctac acgtatcagt
      961 atgagaagga ccgcatcacc atcaccgaca gcctgaaccg ccgtgaagtg ctgcacacgc
     1021 agggtgaagc cgg
//
LOCUS       DAJVSY010000342         1031 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.346, whole genome shotgun sequence.
ACCESSION   DAJVSY010000342 DAJVSY010000000
VERSION     DAJVSY010000342.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.346"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..465
                     /locus_tag="OQQ19_004295"
     CDS             <1..465
                     /locus_tag="OQQ19_004295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014837283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805666.1"
                     /translation="LPISAADKRRFYYYFQEKNTPNIERFFVFDSSEYRYALNMREVV
                     FHQFLSDGLRPIVDEDDDAYEDDYFNVHITLVNGGPVIPLSVEPDAPQNEETDDIGQL
                     NAFFDALDCEPETTDRFMITDEDGEDAFIRIGSIAMVRVALDVLEPVEDDDE"
BASE COUNT          258 a          208 c          254 g          311 t
ORIGIN      
        1 ttgcccattt cagcagcgga taagcggagg ttttattatt attttcagga aaaaaacacc
       61 ccaaacatag aacgcttctt cgtttttgat tcttccgagt atcgttatgc gttaaatatg
      121 cgtgaagtgg tatttcatca gttcctttct gatggtctgc ggccaatcgt tgacgaagac
      181 gatgatgcct acgaagacga ttattttaat gtccatatca cgctggtaaa cggcggacca
      241 gtgattccac tgagtgttga gccagatgcg ccgcaaaacg aagagacgga tgatatcggc
      301 cagttgaatg cattttttga cgcgctggat tgcgagcctg aaaccacgga tcgttttatg
      361 ataaccgacg aagatggaga agatgctttc attcgtattg gttctatcgc tatggtgcga
      421 gttgcgcttg atgtgctgga accagtggaa gacgatgatg agtagtattg aatggattga
      481 tttcatattg ttgagtctgg aatcgcggtg cggccttcgc accacaccgt atgcaaatcg
      541 agtcgctcaa gagcggcttt ttttgtgtct gaaatcaccc atatccgtgc agtatatagg
      601 cctgccagaa aagcagttca gtattcttca ttttgtagtc gatggtccca agtttgctct
      661 ggctggaagc tgcatcgtcc acattacgtg ggcagggtgg tttcgctatg ctacttgaac
      721 gttttgacca tgtggctcag gtagctaata ccaaaagacg tcattttgtc tccacgccca
      781 ccttggtgaa cattcaataa atagtttcgg tcgagagcag ttatgtaggg ctagcagacg
      841 agatgcgcag acatcttgtt gaagacaatt ttactgacca cctgagaacg ctattctacc
      901 gaataatatt tattatcttg gcgaataatg atgattacct gtgtaactat ggttttatgc
      961 tgatgggacc ggcagtacaa tttctgtagt gtactcgcaa tttcaggtct ctggcgttta
     1021 ttctggtgca a
//
LOCUS       DAJVSY010000343         1018 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.347, whole genome shotgun sequence.
ACCESSION   DAJVSY010000343 DAJVSY010000000
VERSION     DAJVSY010000343.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1018
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.347"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..767)
                     /gene="ipaH3"
                     /locus_tag="OQQ19_004296"
     CDS             complement(<1..767)
                     /gene="ipaH3"
                     /locus_tag="OQQ19_004296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase IpaH3"
                     /protein_id="HCS1805667.1"
                     /translation="MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGE
                     NRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASL
                     EYLDACDNHLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPT
                     SLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR
                     ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA"
BASE COUNT          289 a          163 c          249 g          317 t
ORIGIN      
        1 tgggcggttt gttgcgacag agactccctg atccgtgagg acagaggatt gtcttcgagg
       61 atgatagtgc aggtcggatc aaggctaagt atattttccg gaatgtgtgt gatgcgattc
      121 tcgcggcacc ggaaaaatat ctcggtttcc tctgagtgat gatttcttac aggtacggct
      181 ggtaggcttt ccagaagatt agtacttaca tcgagcgctt ccagtgattc aggtaactca
      241 gggagaaatg tcagctggtt atttcttact gagagcactt ccagcgatgt aggtaattca
      301 ggaagcatgg ttagctgatt gttatctgca ttaatatatt ccagcaatgc aggcaattca
      361 ggaagcatgg ttagttggtt gttatctaca tcaagatgtt tcagagatgc gggtaattca
      421 ggaagtgttg acaggtgatt gtcacaggcg tcaaggtatt ccagcgatgc tggcaattct
      481 ggtaatgata ttagggcatt ctgagtaatt tccagaacag tgatttgagg tggtaagttg
      541 tcaggtagcg aggacagatt taaacgattc agttgaagct cactgaactg attgatgaga
      601 cattctttaa gtagggagac cgcttcattc cgattttcac cggggagcgc ttgtttttcc
      661 catttatccc atgctgaaaa gtaatcagca tatgtaccgg aaatagtgtt ataaaaagaa
      721 ttttgggaca atgaaaagtt attatttatc ggtaacatga tggacattca gttaaagccg
      781 atggacaaat ggctttgtta aaagaaataa gtaggagttt ttatgaagtt cattccatga
      841 aatgaacttc agcacttttt tattataaaa ggacaaacaa aattggctgt aaaaaaacga
      901 tactgtttca gttaactgtg aatagcttgc ttgcaccgta ttgttcttgt ttttcggtta
      961 gttaaacatc gtacttcata tttgaacgtt ctgccggaat gcattatcaa tagaggta
//
LOCUS       DAJVSY010000344         1009 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.348, whole genome shotgun sequence.
ACCESSION   DAJVSY010000344 DAJVSY010000000
VERSION     DAJVSY010000344.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.348"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            201..395
                     /gene="bfd"
                     /locus_tag="OQQ19_004297"
     CDS             201..395
                     /gene="bfd"
                     /locus_tag="OQQ19_004297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin-associated ferredoxin"
                     /protein_id="HCS1805668.1"
                     /translation="MYVCLCNGVSDKKIRQAVRQFHPQSFQQLRKFIPVGNQCGKCIR
                     AAREVMQDELMQMPEFKEIA"
     gene            468..944
                     /gene="bfr"
                     /locus_tag="OQQ19_004298"
     CDS             468..944
                     /gene="bfr"
                     /locus_tag="OQQ19_004298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HCS1805669.1"
                     /translation="MKGDVKIINYLNKLLGNELVAINQYFLHARMFKNWGLMRLNDVE
                     YHESIDEMKHADKYIERILFLEGTPNLQDLGKLGIGEDVEEMLQSDLRLEQEGAKDLR
                     EAIAYADSVHDYVSRDMMIEILADEEGHIDWLETELDLIGKIGLQNYLQSQIKVKD"
     gene            complement(941..>1009)
                     /locus_tag="OQQ19_004299"
     CDS             complement(941..>1009)
                     /locus_tag="OQQ19_004299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HCS1805670.1"
                     /translation="PFGPFLAAAGFVIGWDSLLIGR"
BASE COUNT          302 a          205 c          231 g          271 t
ORIGIN      
        1 gctaaagttc tgggttaatt acacgttaat tagttttgaa ttgaaaaggg cgcttcggcg
       61 ccctttttgc tgcccgtaat ttgagctcga aatatttagt cgtaattttg ctcgctgaac
      121 tatggcgcaa ataaaactgt gctattgtaa tcataatcat tctcatttac actttgcgca
      181 gaatttgaac gggagcaatc atgtacgttt gtttgtgtaa tggtgtaagt gacaaaaaaa
      241 ttcgccaggc agtccgtcag tttcatccgc aatctttcca acaattgcgt aagtttattc
      301 ctgtgggaaa tcaatgcggt aagtgcattc gcgccgcgcg cgaagtgatg caggacgagt
      361 tgatgcagat gccagaattt aaagagattg cctgaagacc acgcttattt tttgacatcc
      421 cgctagcccc atctacgctc taatagtgga agcggaggga ctataaaatg aaaggtgatg
      481 ttaaaatcat aaattatctc aataaactat tgggaaatga gcttgtcgca atcaatcagt
      541 attttctcca tgcccggatg tttaaaaact ggggcctgat gcgtctcaat gacgtcgaat
      601 accatgaatc catcgatgag atgaaacacg ctgataaata tatcgagcgt attttgtttt
      661 tagaaggaac ccccaactta caggatttag gcaaactggg gattggtgaa gatgtcgagg
      721 agatgctgca atccgacctg cgattagaac aggaaggcgc gaaggatctg cgtgaggcta
      781 tcgcatatgc cgacagcgtt catgactatg ttagccgcga tatgatgatc gagatccttg
      841 ctgatgaaga aggtcatatc gactggctcg aaactgaact ggatctcatc ggtaaaattg
      901 gcctacaaaa ttacctgcaa tcacaaatta aagttaaaga ttaacggcct atcagcaaac
      961 tatcccagcc tataacgaaa cccgcagccg ccagaaatgg cccaaaagg
//
LOCUS       DAJVSY010000345         1007 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.349, whole genome shotgun sequence.
ACCESSION   DAJVSY010000345 DAJVSY010000000
VERSION     DAJVSY010000345.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1007)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1007)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.349"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>1007
                     /locus_tag="OQQ19_004300"
     CDS             <1..>1007
                     /locus_tag="OQQ19_004300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HCS1805671.1"
                     /translation="VEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETA
                     RLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAANYRSEHLWIVARDGVEVPV
                     SLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELG
                     QQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYAMGGSAGGMLMGVAINQRPE
                     LFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQA
                     YPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDNHLLLLCTDMDSGHGGKSGRFKSYE
                     G"
BASE COUNT          244 a          223 c          267 g          273 t
ORIGIN      
        1 ggttgaagag cgtcagcgcg ggttaaccag tttgcgccaa attaaccgca agacccggga
       61 agtcattggt attgcctttg atgatccagc ctatgtgacc tggattgcct acaatccaga
      121 acctgaaacc gcgcgattgc gttatggtta ttcttccatg accacaccag acactttgtt
      181 tgaactggat atggataccg gtgagcgtcg tgtattaaaa caaacggaag ttcctggttt
      241 tgatgcggcg aattaccgca gtgaacacct gtggatagtc gcccgtgatg gcgtcgaagt
      301 tccggtttcg ttggtctacc atcgcaaaca ttttcgcaaa ggacacaacc cgttgctggt
      361 gtatggctat ggttcttacg gcgcaagtat tgatgccgat ttcagtttta gccgcttgag
      421 tttgttagat cgtggctttg tctacgccat tgtccatgtt cgcggcggtg gtgagctggg
      481 gcaacaatgg tacgaagacg gaaaatttct gaagaagaaa aatacgttta atgattatct
      541 tgatgcctgc gatgcattgt taaaactggg ctatggctct ccttcgcttt gttatgcgat
      601 gggcgggagt gcggggggca tgttgatggg cgttgcaatt aatcaacgcc cggaattatt
      661 ccacggcgtt atcgcccagg taccgtttgt tgatgttgta acaacgatgc ttgatgaatc
      721 aattcctctt accactggtg agtttgaaga gtggggtaac ccgcaggatc cgcaatatta
      781 cgagtacatg aaaagctaca gcccgtatga caacgtcacc gcacaggctt atccgcattt
      841 actggtaacg accggtttac acgattctca ggtgcaatat tgggaaccgg caaaatgggt
      901 cgctaaattg cgcgagctga aaaccgataa ccatctttta ttgctctgta ccgacatgga
      961 ctcaggccat ggcggtaaat ctggccgctt taaatcgtac gaaggcg
//
LOCUS       DAJVSY010000346          999 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.350, whole genome shotgun sequence.
ACCESSION   DAJVSY010000346 DAJVSY010000000
VERSION     DAJVSY010000346.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 999)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 999)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..999
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.350"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..116
                     /locus_tag="OQQ19_004301"
     CDS             <1..116
                     /locus_tag="OQQ19_004301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS1805672.1"
                     /translation="VSASSCKVEFRHGNMTLENPSPELLTVLIRELTGRGR"
     gene            113..463
                     /gene="tnpB"
                     /locus_tag="OQQ19_004302"
     CDS             113..463
                     /gene="tnpB"
                     /locus_tag="OQQ19_004302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017901265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS1805673.1"
                     /translation="MISLPSGTRIWLVAGITDMRKSFNGLGEQVQHVLNDNPFSGHLF
                     IFRGRRGDMIKILWADADGLCLFTRRLEEGQFIWPAVRDGKVSITRSQLAMLLDKLDW
                     RQPKTSRLNALTML"
     gene            494..>999
                     /locus_tag="OQQ19_004303"
     CDS             494..>999
                     /locus_tag="OQQ19_004303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1805674.1"
                     /translation="MNQKYLIRIAELECQLRQKDQQLSLVEETEAFLRSALARAEEKI
                     EEDEREIEHLRAQIEKLRRMLFGTRSEKLRREVEQAEALLKQREQDSDRYSGREDDPQ
                     VPRQLRQSRHRRPLPEHLPREINRLEPEESCCPECGGELDYLGEVSAEQLELVSSALK
                     VIRTERVK"
BASE COUNT          254 a          255 c          284 g          206 t
ORIGIN      
        1 cagttagtgc cagctcctgc aaggtggagt tccgtcacgg taacatgacg ctggaaaatc
       61 cttcaccaga gctgctcaca gtgttgatcc gtgaactgac cgggagggga cgatgatctc
      121 actcccgtca ggcacccgca tctggctcgt tgctgggata accgatatgc gtaagtcttt
      181 caacgggctg ggtgaacagg tacagcatgt gctgaatgat aatcccttct ccggtcacct
      241 gttcatcttc cgtggccgac ggggtgacat gattaaaatc ctgtgggctg atgctgatgg
      301 tctgtgcctg ttcaccagac gcctggagga aggccagttt atctggcctg ctgtgcgtga
      361 cggcaaggta tccattaccc gctcgcaact ggcaatgctc ctcgataagc tggactggcg
      421 tcagccaaaa acatcccgcc ttaatgcact gacaatgttg taaaaatgtc atggccggat
      481 tataaaaacg gccatgaatc aaaaatacct cattcgcatt gcagaactgg aatgccagct
      541 ccgtcagaaa gaccagcaac tgagtctggt tgaagagacg gaggccttcc tgcgctctgc
      601 actggcccgc gccgaagaaa agatcgaaga agatgaacgg gaaatagaac atctgcgggc
      661 tcagatagaa aaactgcgcc ggatgctgtt cggtacccgt tctgaaaaac tgcgtcgtga
      721 agttgaacag gctgaggccc tgctgaaaca acgcgaacag gacagtgatc gttacagtgg
      781 gcgggaagac gatccgcagg ttccccgcca gttgcgacag tctcgtcatc gtcgcccgtt
      841 accggagcat ctgccccgcg aaataaatcg cctggagcca gaagaaagct gttgcccgga
      901 gtgtggcggt gagctggatt atctggggga agtcagcgca gaacaactgg aactggtgag
      961 cagcgctctg aaagtgatcc gcacagaacg ggtaaaaaa
//
LOCUS       DAJVSY010000347          996 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.351, whole genome shotgun sequence.
ACCESSION   DAJVSY010000347 DAJVSY010000000
VERSION     DAJVSY010000347.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.351"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..209)
                     /gene="tuf"
                     /locus_tag="OQQ19_004304"
     CDS             complement(<1..209)
                     /gene="tuf"
                     /locus_tag="OQQ19_004304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="EF-Tu; promotes GTP-dependent binding of
                     aminoacyl-tRNA to the A-site of ribosomes during protein
                     biosynthesis; when the tRNA anticodon matches the mRNA
                     codon, GTP hydrolysis results; the inactive EF-Tu-GDP
                     leaves the ribosome and release of GDP is promoted by
                     elongation factor Ts; many prokaryotes have two copies of
                     the gene encoding EF-Tu; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HCS1805675.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA
                     RAFDQIDNAPEEKARGITINTSHVE"
     gene            complement(324..399)
                     /locus_tag="OQQ19_004305"
     tRNA            complement(324..399)
                     /locus_tag="OQQ19_004305"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(364..366),aa:Thr,seq:ggt)
     gene            complement(406..480)
                     /locus_tag="OQQ19_004306"
     tRNA            complement(406..480)
                     /locus_tag="OQQ19_004306"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(445..447),aa:Gly,seq:tcc)
     gene            complement(597..681)
                     /locus_tag="OQQ19_004307"
     tRNA            complement(597..681)
                     /locus_tag="OQQ19_004307"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(645..647),aa:Tyr,seq:gta)
     gene            complement(690..765)
                     /locus_tag="OQQ19_004308"
     tRNA            complement(690..765)
                     /locus_tag="OQQ19_004308"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(730..732),aa:Thr,seq:tgt)
BASE COUNT          259 a          236 c          244 g          257 t
ORIGIN      
        1 tattcaacgt gagaagtgtt gatggtgata ccacgagctt tttcttccgg cgcgttatcg
       61 atctggtcga atgcgcgagc agcaccgccg taggttttag ccagtacggt agtgattgca
      121 gcggtcagcg ttgttttacc atggtcaacg tggccgatag taccgacgtt aacgtgcggt
      181 tttgtacgtt caaacttttc tttagacatc gattgtccct ctaagacacg gataaatcgg
      241 tgatatcacc acatcaacca ggcaacatgc ccgacttgtt gaatgcaata aacagaagga
      301 aaaaacaggg aggagaaaag aagtggtgct gataggcaga ttcgaactgc cgacctcacc
      361 cttaccaagg gtgcgctcta ccaactgagc tatatcagca catcttggag cgggcagcgg
      421 gaatcgaacc cgcatcatca gcttggaagg ctgaggtaat agccattata cgatgcccgc
      481 atcctggaac tcggctacct gattttcatt ctgcactgaa tatcgagaga agctctcttt
      541 attcgagccg gtaagcgaac ttatcgtctc gggctacgcc atcgcgtggc cgaaattggt
      601 ggtgggggaa ggattcgaac cttcgaagtc tgtgacggca gatttacagt ctgctccctt
      661 tggccgctcg ggaaccccac cggacttgat ggtgccgact accggaatcg aactggtgac
      721 ctactgatta caagtcagtt gctctaccta ctgagctaag tcggcatcaa gtagcgcgca
      781 ttctatggag acatgcgagt tcatgcaact aaaaaattgc ataatttgtt ttattggtca
      841 cattttatgc gacacgatga agaaacagcc gaatggaggg cagattagca cactttttca
      901 acatcattgt gctcaacaat gcgctcctgc taaaccataa ttcttcttat cagatggaat
      961 atctgtcaca ttgcttttca acgatagctt cctagg
//
LOCUS       DAJVSY010000348          987 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.352, whole genome shotgun sequence.
ACCESSION   DAJVSY010000348 DAJVSY010000000
VERSION     DAJVSY010000348.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 987)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 987)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..987
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.352"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..978
                     /locus_tag="OQQ19_004309"
     CDS             <1..978
                     /locus_tag="OQQ19_004309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HCS1805676.1"
                     /translation="CEHLPLYRQSEIFARQGVELSRALLSNLVDACCQLMTPLNDALY
                     RYVMNSRKVHTDDTPVKVLAPGRKKAKTGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQ
                     GKHPEQHLSPFRGILQADAFNGYDRLFSAEREGGALTEAGCWAHARRKVHDVYISTKS
                     ATAEEALKLIGELYAIEHEIRGLPVSERLAVRQMQSKPLLTSLYKLMQEKEHTLSKKC
                     RLRDAFRYIRKHWVALCNFSDDGLAEADNNAAERALRAVCLGKKNFMFFGSDHGGERG
                     ALLYGLIGTCRLNGIDPEAYLRYILSVLPEWPSNRVDELLPWNVALTNK"
BASE COUNT          248 a          244 c          285 g          210 t
ORIGIN      
        1 tgcgaacacc tgccactgta tcgtcagagt gaaatttttg cccgtcaggg tgtcgaactg
       61 agccgtgcat tactctccaa cttggttgac gcgtgctgcc agttaatgac gccgctgaat
      121 gatgctctgt accgttatgt aatgaacagc cgcaaagttc acactgatga cacaccagta
      181 aaagtgctgg caccgggcag gaagaaggcg aaaacaggat atatctggac gtatgtccgg
      241 gatgacagga atgccggttc gccagagcct ccggcggtct ggttcgccta ctcaccggac
      301 catcagggta aacatccgga gcagcacctt agtcccttcc ggggtatcct gcaggcagat
      361 gcgtttaatg gttacgatcg gctgttcagt gccgaacgag aaggcggcgc gttgacggaa
      421 gcaggatgct gggctcatgc gcggcgcaaa gtccacgatg tatatatcag taccaaaagc
      481 gcgacagcgg aagaagccct gaaactaatc ggtgagctgt acgccatcga gcacgaaata
      541 cgcgggttgc cggtgtctga acgcctggcg gtcaggcaaa tgcagagtaa accgctactg
      601 acttccctgt ataagctgat gcaggagaaa gaacacacgt tatcgaaaaa atgccgtctg
      661 agagatgcgt tccggtatat caggaagcac tgggttgcgt tgtgcaactt cagtgatgat
      721 ggtctggctg aggcggataa taatgccgcg gaaagagcgc ttcgtgcagt ctgtctcgga
      781 aagaaaaact ttatgttctt cggcagcgat cacggtggag agcgtggtgc gctactgtac
      841 gggctgatcg gcacctgccg actgaacggt atcgatccgg aagcgtatct gcgctatatc
      901 ctgagcgtac tgccggaatg gccttccaac cgtgttgacg aactcctgcc atggaacgta
      961 gcactcacca ataaataagc gtcaata
//
LOCUS       DAJVSY010000349          984 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.353, whole genome shotgun sequence.
ACCESSION   DAJVSY010000349 DAJVSY010000000
VERSION     DAJVSY010000349.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 984)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 984)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..984
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.353"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..190
                     /locus_tag="OQQ19_004310"
     CDS             <1..190
                     /locus_tag="OQQ19_004310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YfiR family protein"
                     /protein_id="HCS1805677.1"
                     /translation="QYPSKALLLIAKQNTECIIGSAFCLIIHNNDVRFAVNLDALSRS
                     GVKVNPDVLMLARKKNDG"
     gene            180..>984
                     /gene="dgcN"
                     /locus_tag="OQQ19_004311"
     CDS             180..>984
                     /gene="dgcN"
                     /locus_tag="OQQ19_004311"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DgcN"
                     /protein_id="HCS1805678.1"
                     /translation="MMDNDNSLNKRPTFKRALRNISMTSIFITMMLIWLLLSVTSVLT
                     LKQYAQKNLALTAATMTYSLEAAVVFADGPAATETLAALGQQGQFSTAEVRDKQQNIL
                     ASWHYTRKDPGDTFSNFISHWLFPAPIIQPIRHNGETIGEVRLTARDSSISHFIWFSL
                     AVLTGCILLASGIAITLTRHLHNGLVEALKNITDVVHDVRSNRNFSRRVSEERIAEFH
                     RFALDFNSLLDEMEEWQLRLQAKNAQLLRTALHDPLTGLANRAAFRSGIN"
BASE COUNT          260 a          259 c          219 g          246 t
ORIGIN      
        1 acaatatccg tcaaaggcgt tattattaat tgccaaacaa aataccgagt gcattattgg
       61 tagcgccttt tgtctgatca tccacaataa tgacgtcaga tttgccgtaa acctggatgc
      121 cttatcgcgt agcggtgtaa aggtcaaccc ggatgtctta atgctcgcac ggaagaaaaa
      181 tgatggataa cgataattct cttaataagc gccccacgtt taaaagagca ttacgcaaca
      241 tcagtatgac cagcatattt atcactatga tgctgatctg gttgctgctt tccgtgacct
      301 cggtgctgac cctgaaacag tacgcgcaaa aaaacctggc actgacagca gcaacaatga
      361 cttacagtct ggaagcagct gtcgtttttg ccgatggccc tgcagcaact gaaacactgg
      421 cagcgctggg ccagcaaggg caattttcaa ctgcagaagt acgtgataag cagcaaaata
      481 ttctggcgtc ctggcattac acccgtaagg atccaggcga tactttcagc aatttcataa
      541 gccactggct cttccccgcc cccatcattc agccgattcg tcacaatggt gaaaccattg
      601 gcgaagtacg cttaaccgct cgcgacagtt caatcagcca ttttatctgg ttttcgctcg
      661 ccgtactgac cggttgtatt ctgctggcat caggcatcgc aattaccctc acccgccatt
      721 tgcacaatgg cctagtggaa gcgctgaaaa atatcaccga tgtcgtacat gatgtgcgtt
      781 ccaaccgcaa tttttcccga cgagtttctg aagaacgtat cgctgagttt caccgcttcg
      841 ctctcgactt caacagtctg ctggatgaaa tggaagagtg gcagcttcgt ttacaggcca
      901 aaaatgcgca gcttctgcgt accgcgctac atgacccatt aaccgggctg gctaaccgcg
      961 cagcgtttcg tagcggcatc aata
//
LOCUS       DAJVSY010000350          980 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.354, whole genome shotgun sequence.
ACCESSION   DAJVSY010000350 DAJVSY010000000
VERSION     DAJVSY010000350.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 980)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 980)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..980
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.354"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(68..980)
                     /locus_tag="OQQ19_004312"
                     /pseudo
     CDS             complement(68..980)
                     /locus_tag="OQQ19_004312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418115.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT          309 a          227 c          225 g          219 t
ORIGIN      
        1 aaaaatatca tcagatggct gcttaaaaaa agaacaaatg gtagtgtccg ctattgccag
       61 tacacctcat accacagaga ataccaagga agatggcatt tagaatttgc aattccagct
      121 caaccgccgg agtcgtcgcc atgagtacgc tggcgtaaaa acacatacca ctcacgatag
      181 caatgagcat taatagtcgc ttgccaatac gtttcatgta atagcctgcg attaacatca
      241 tcggaatttc cagaccggca gcgataccaa tcatttctcc agccagttta tcggttagat
      301 gcagttcatc aataataaat agcggcatat ttatcatgta gagattattc gccgcccaca
      361 tcattgaaca gaccacaaaa agtagccgcg tatcccgctt cctatgggtg gagggtaaaa
      421 tttctacggg ttgggtaacg acaggaatat ttctttgtat tgatggcaaa aacaaccaga
      481 ctatcagccc gcaaacaaca aatgcgatgg cagcggtgag atacatcact ttaaaactaa
      541 accccattgc cagttcataa gcgagcggtg gcccgataac ccaggcaagc gagatctgag
      601 cacgtaaaaa tgtactgaac atgaccgtct cacggcctgt tctgtcggcg tgttcacggg
      661 cgagggcgaa catttgcggg tttgcggtag aagcaaaact actcagaagt acgcccgtag
      721 agaggagaat gaagtagttg agattccacg caaaaagcgt gcaggccagc actccaaata
      781 agcaacatag cagaatcagt aatttacggt cgccttgttt atcggagtgc cttgccagaa
      841 attgactgac cagaattccc ataatagcgc taccggtgaa gaaaaaacct accattatag
      901 gacgggcttt cagttcatct gcgaggaata tacttagggt aggagtctga agagcgcccg
      961 caatacccgt cagaaaggcg
//
LOCUS       DAJVSY010000351          969 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.355, whole genome shotgun sequence.
ACCESSION   DAJVSY010000351 DAJVSY010000000
VERSION     DAJVSY010000351.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 969)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 969)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.355"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..933)
                     /locus_tag="OQQ19_004313"
     CDS             complement(<1..933)
                     /locus_tag="OQQ19_004313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF945 family protein"
                     /protein_id="HCS1805679.1"
                     /translation="MIRKSATGVIVALAVIWGGGIWYTGTQIQPGVEKFIKDFNDAKK
                     KGEHAYDMTLSYKNFDKGFFNSHFQMQISFDNGAPDLNIKPGQKVAFDVDVEHGPLPI
                     TMLMHGNVIPALAAAKVNLVNNELTQPLFIAAKNKSPVEATLRFAFGGSFSTTLDVAP
                     AEYGKFSFGEGQFTFNGDGSSLSNLDIEGKVEDIVLQLSPMNKVTAKSFTIDSLTRLE
                     EKKFPVGESESKFNQVNIINQGEDVAQIDAFVAKTRLDRVKDKDYINVNLTYELDKLT
                     KGNQQLGSGEWSLIAESIDPSAVRQFIIQYNIAMQ"
BASE COUNT          282 a          216 c          173 g          298 t
ORIGIN      
        1 ctgcatcgca atgttatact ggatgataaa ttggcgcact gctgagggat caatagattc
       61 agcaatcaat gaccactcac cactaccgag ttgctgattc ccttttgtta acttatcaag
      121 ttcgtaggtc agattgacat tgatataatc tttgtcttta acgcgatcca gcctggtttt
      181 tgcaacgaaa gcatcgattt gggcaacgtc ttccccctga ttgataatat taacctgatt
      241 aaatttcgac tcgctttcac caaccggaaa tttcttttct tctaatcgtg tcagagaatc
      301 aatggtaaaa ctttttgccg ttactttgtt cattggtgat aattgcagaa caatatcttc
      361 gactttgcct tcaatatcca ggttagacaa tgaactacca tcaccattaa aagtaaactg
      421 gccctcacca aaagaaaact ttccatactc tgcaggggca acatctaatg tcgtagagaa
      481 tgagccacca aacgcgaatc gcaatgtcgc ttccacgggc gatttatttt tcgcggcgat
      541 aaatagcggt tgtgtcagtt cattattcac taagttcact tttgccgctg ccagtgctgg
      601 gatgacatta ccatgcatta acattgtgat gggcaacgga ccgtgctcaa catccacatc
      661 aaatgcaact ttctggcctg gcttgatatt gagatcgggt gcaccgttat caaatgaaat
      721 ttgcatttga aaatgggaat taaaaaagcc tttgtcaaag tttttataac ttaacgtcat
      781 atcgtaggca tgttcacctt tctttttagc atcgttaaaa tctttaataa atttttcgac
      841 accaggctga atttgcgtac ctgtgtacca tatgccacca ccccagatta cggctaacgc
      901 aacaataaca cctgtagctg acttacgtat catataaata ttccctgata aaacagcaaa
      961 actttgaat
//
LOCUS       DAJVSY010000352          941 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.357, whole genome shotgun sequence.
ACCESSION   DAJVSY010000352 DAJVSY010000000
VERSION     DAJVSY010000352.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..941
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.357"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..565
                     /gene="envY"
                     /locus_tag="OQQ19_004314"
     CDS             <1..565
                     /gene="envY"
                     /locus_tag="OQQ19_004314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator EnvY"
                     /protein_id="HCS1805680.1"
                     /translation="LLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPS
                     KPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIV
                     ASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTS
                     YFISVFKAFYGLTPLNYLAKQRQKVMW"
     gene            complement(611..687)
                     /locus_tag="OQQ19_004315"
     tRNA            complement(611..687)
                     /locus_tag="OQQ19_004315"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(651..653),aa:Arg,seq:tct)
BASE COUNT          259 a          227 c          217 g          238 t
ORIGIN      
        1 tctgttgttt ttaaataaga acttaacctg tgtaaagccc tggtcgcggc tggcaacccc
       61 ggttatcgct tgtcatagcc gtacaccgga agtgttccgg ctagccgcca accacagcaa
      121 gcagcaaccc agcaaaccct gcgaagcgga gttgacgcgc gcattacttt ttaccgtatt
      181 gtctaacttt cttgagcaat cgcggtttat tgccctactg atgtatatct tacgcagcag
      241 cgtccgcgac agcgtctgcc gcattattca aagcgatatt cagcattact ggaatctgcg
      301 aattgtcgcc agttcgctat gtttaagccc cagcctgctc aaaaagaaat taaaaaacga
      361 aaataccagc tatagccaga ttgtcacaga gtgtcgtatg cgttacgccg tacagatgtt
      421 attgatggat aacaaaaata tcactcaggt ggcgcaatta tgtggctata gcagcacgtc
      481 gtactttatc tctgttttta aggcgtttta cggcctgaca ccgttgaatt atctcgccaa
      541 acagcgacaa aaagtgatgt ggtgaagggc aaagcggaaa cggataagac gggcataaat
      601 gaagaagaaa tggcgcgccc tgcaggattc gaacctgcgg cccacgactt agaaggtcgt
      661 tgctctatcc aactgagcta agggcgcgtt gataccgcaa tgcggtgtaa tcgcgtgaat
      721 tatacggtca acccttgctg agtcaatggc ttttgatctg gttgctgaac aagtgaacga
      781 ccgcgtctga ttttctgatt tatttcgcta tagcggcaaa caaacgcaca ccgctgcgcg
      841 tctgaatcaa gaaaacccgt attttcatgt atcaaagtac aatttaccgc cctaacggaa
      901 aattgtccgc tcctatgaga ctggtaacta tgaaaccaac g
//
LOCUS       DAJVSY010000353          941 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.358, whole genome shotgun sequence.
ACCESSION   DAJVSY010000353 DAJVSY010000000
VERSION     DAJVSY010000353.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..941
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.358"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            1..355
                     /gene="tnpA"
                     /locus_tag="OQQ19_004316"
                     /pseudo
     CDS             1..355
                     /gene="tnpA"
                     /locus_tag="OQQ19_004316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000604919.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
     gene            complement(373..941)
                     /locus_tag="OQQ19_004317"
                     /pseudo
     CDS             complement(373..941)
                     /locus_tag="OQQ19_004317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310063.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3313 domain-containing protein"
BASE COUNT          240 a          219 c          215 g          267 t
ORIGIN      
        1 tgtatgtgct tattttgaag ctgaactggt tgaaatggat ggcgaaccag atcacgtcca
       61 tttgttaatt aactaacctc ccaaactggc gatatccagt ctggtaaaca gcctcaaagg
      121 cgtatcgggt aggttactgc gacgagatcg accagatatt gcagtcaggt attactacaa
      181 aggcgttttg tggagtcctg gctattttgc cagtagctgc ggaggtgcgc caatatccgt
      241 catccgccaa tacattgaac aacagcaaac acctggtcag gtggaaaacc gcgccttata
      301 tccccgccct gaaggatggg gttttacggc gcaccggata aaaagcgcca tctaacgatg
      361 gcgcgtctgg aactactttt tgttaacgtc aaacatggtg gcatcggtcg ccatgtcatc
      421 aataacttgt ttaatatttt cgaaagccat tggcgtactt tcgttattca ggtctttacc
      481 ttagccctga cgaacgactt tgataaccgg tttattagtc gctgcatcaa tcagctcacc
      541 ttcaaaatag aggcgagtat ccatggtacg gtgacctgta gccatttgcg tccccgcaac
      601 cactaatgca acaggaacca cttcatagaa ttgcagccct tctttgctgg tatctacacc
      661 ggtaatggcc ccacggaaaa tcagactacg cggcccagcg gtggtaacca gtggtttacg
      721 ctgcgctatc gcttctttca tttcggtgtt ggtatagttc aaaattttat ccagaacttt
      781 ctgccctacc tgggtagaag gttttggcac cggataataa gtgattgggt tccagacgat
      841 gctgtcatat ttgctttgat caaaactcgg gtctacccaa cgtaaaacag gtttacctgt
      901 tgctgaggtt gtttctttta aatcagagta attgtttaaa a
//
LOCUS       DAJVSY010000354          928 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.360, whole genome shotgun sequence.
ACCESSION   DAJVSY010000354 DAJVSY010000000
VERSION     DAJVSY010000354.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.360"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(45..381)
                     /locus_tag="OQQ19_004318"
                     /pseudo
     CDS             complement(45..381)
                     /locus_tag="OQQ19_004318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502602.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          305 a          167 c          168 g          288 t
ORIGIN      
        1 aatatgaaaa gatggtttaa ataccccgtt acttttgact tacactatac ggtatcgcat
       61 cgtttaatat tcgcaccggc cagattttta tttctattag ttgtcacaat actgaatgcg
      121 tacgaccaca gtattctggc tcctgtgtgg tcatgcttta attctgcgtt ccggacagat
      181 aagcagttgc ttgcaggaat ccttcttgtg ttaatgtcag ttcccctttt taccagtgct
      241 gatttccaca ttccgtccaa cagagcttat agcctttccc tggattatag cattgtccgg
      301 ctgaagttct ttttgaataa taatagaagc actgctggca gatccagtcc gtttttcata
      361 acccactgta ctgataacca taatctaatc agtagaaatt gagtcgaaaa taagcactac
      421 tccatacagg ataattagag gtcagtttga ttattcacaa ttcattatca gcattttctg
      481 tttctgacga aatcaacatg aaaagaacca tatatgataa ttattataat aacggcttta
      541 attggaatac atatattaca acgtattata tataattggt attctgggaa ctatattctc
      601 aaaatacagt agaaacgagg tatgtttctg gtggaaagga cagtgggatt aaaaagtaag
      661 aattgataaa aaaacgccag caacacatag tgccggcgga gggaataccc catggagaaa
      721 atgtgatgcc tagagcacca tgaatatata attaaaaata gttagagttg tcaatacttt
      781 cacaaaaata attttcgtag tttcgtagta tagaaagata tttttatgca tgacctacct
      841 gaatttgctc cgggtagagg ttataaataa aaattgaatc acgacaaaca caatattcat
      901 agtatggcga tgcctacgcc agcaagaa
//
LOCUS       DAJVSY010000355          921 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.361, whole genome shotgun sequence.
ACCESSION   DAJVSY010000355 DAJVSY010000000
VERSION     DAJVSY010000355.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.361"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..>921)
                     /locus_tag="OQQ19_004319"
     CDS             complement(<1..>921)
                     /locus_tag="OQQ19_004319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF898 family protein"
                     /protein_id="HCS1805681.1"
                     /translation="RFSYGITGGNVFFSCLVFVFFYFAILMTVSADMPLVGCVLTLSL
                     LVLLIFMAAKGLRYQALMTSLNGVRFSFNCSMKGFWWVTFFLPILMAIGMGTVFFIST
                     KMLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDT
                     AYCIKYAILAFLALLPFLAVAGYIIFEQILNAYDSSVYANDDIENLQQFMEMQRKMII
                     AQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISG
                     ITGGLAYPLLKIWMIDWQAKNTYLLGDLDDL"
BASE COUNT          354 a          207 c          141 g          219 t
ORIGIN      
        1 aaggtcatcc aaatcgccca gcaaatacgt attttttgcc tgccagtcaa tcatccatat
       61 tttcagcagt ggataagcca gaccgcccgt aatcccggat atcactacca acgcacacat
      121 gcgataaagc ataccgtggt acgttaaagt tgagcgaaaa cgaatacgcc catcattcag
      181 tgacaggtta ctcataaaat gatttcgcaa cgacaccgtt aaataactgg tgctaacagc
      241 aatcccaaaa taatagatta actgcgcgat tatcatttta cgttgcattt ccataaattg
      301 ctgtaaattc tcaatatcat catttgcata cacagaacta tcatacgcat ttaatatttg
      361 ttcgaagata atataaccag caacagcgag aaaaggtaat aaagctaaaa atgcgaggat
      421 ggcatatttt atacaatacg cagtatctaa tttcaccttg aaacgatgta taccgaaact
      481 ggtattgctc cagagaaaac tcattaccag gctatataaa gtaccattaa aaataccaat
      541 ggaaacaata ccaactattg ccatcagaac cacagatata ataacactac ttgaactatt
      601 ggcatgtagc atctttgtcg agataaagaa aacagtcccc atcccaatgg ccattaaaat
      661 cggcaagaaa aaggttaccc accagaaccc tttcatagag caattaaaac taaatcttac
      721 gccgttgaga ctagtcatca aggcctgata acgcagtcct tttgctgcca taaatataag
      781 caaaaccaac agtgacaaag tcaaaacaca gccaacaagc ggcatatctg ctgacactgt
      841 cattaagatt gcgaaataga aaaaaacaaa aacaagacaa ctaaaaaaaa cattcccacc
      901 agtaattcca taagaaaatc g
//
LOCUS       DAJVSY010000356          915 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.362, whole genome shotgun sequence.
ACCESSION   DAJVSY010000356 DAJVSY010000000
VERSION     DAJVSY010000356.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 915)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 915)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.362"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..186)
                     /locus_tag="OQQ19_004320"
     CDS             complement(<1..186)
                     /locus_tag="OQQ19_004320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II holin family protein"
                     /protein_id="HCS1805682.1"
                     /translation="MKSMDKISTGIAYGTSAGSAGYWFLQWLDQVSPSQWAAIGVLGS
                     LLLGLLTYLTNLYFKIRE"
     gene            complement(479..553)
                     /locus_tag="OQQ19_004321"
     tRNA            complement(479..553)
                     /locus_tag="OQQ19_004321"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(518..520),aa:Gly,seq:tcc)
     gene            complement(557..632)
                     /locus_tag="OQQ19_004322"
     tRNA            complement(557..632)
                     /locus_tag="OQQ19_004322"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(597..599),aa:Thr,seq:tgt)
     gene            complement(635..711)
                     /locus_tag="OQQ19_004323"
     tRNA            complement(635..711)
                     /locus_tag="OQQ19_004323"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(675..677),aa:Arg,seq:tct)
     gene            complement(713..789)
                     /locus_tag="OQQ19_004324"
     tRNA            complement(713..789)
                     /locus_tag="OQQ19_004324"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(753..755),aa:Ile,seq:cat)
BASE COUNT          267 a          234 c          212 g          202 t
ORIGIN      
        1 ttctcttatt ttgaaataca gattcgtcag ataagtcaga agccccagaa gcagacttcc
       61 cagcacacca atcgcagccc actgtgatgg actgacctga tccaaccact gcaaaaacca
      121 gtagccggca ctgccggcgg aggtgccgta ggcaatgccc gttgaaattt tgtccatgga
      181 tttcatagcc tcacctccgc aaataacgga tggcgtagtt ttacactgag aaatgaaagg
      241 gatttgaaaa gaaaaaaacg caaaagcggg cgaaacgata tatacagtaa ggaaagcact
      301 ctatccaaca aaccacccac agttaatcgg aataaaagca gagtgcttat gaatgatcgc
      361 acgcccgaag gttagtattt ctgcacagca attttgcaaa aaaaggcgat cattcataac
      421 ttaaacgtct ttcagtcact ccgggatttc ccatcatcgc agactgaaag actctgactg
      481 gagcgggcag cgggaatcga acccgcatca tcagcttgga aggctgaggt aatagccatt
      541 atacgatgcc cgcatatggt gccgactacc ggaatcgaac tggtgaccta ctgattacaa
      601 gtcagttgct ctgcctgctg agctaagtcg gcgctggccc accaccgagg actcgaacct
      661 cgcaccgtca acttagaagg ttgatgctct atccggatga gctagtggtg gttggtggcc
      721 cttgctggac ttgaaccagc gacctggcga ttatgagtcg ctcgctctga ccaactgagc
      781 taaagggccg gaggcagaat aataaccata tgtcatcaca tctgcaaact catctgacca
      841 ccagcacgtt taacgtcctg tgccgttttt caggtataaa aaaacccgca taaagcgggc
      901 tctttcaaat gtcca
//
LOCUS       DAJVSY010000357          915 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.363, whole genome shotgun sequence.
ACCESSION   DAJVSY010000357 DAJVSY010000000
VERSION     DAJVSY010000357.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 915)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 915)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.363"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            1..623
                     /locus_tag="OQQ19_004325"
                     /pseudo
     CDS             1..623
                     /locus_tag="OQQ19_004325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416251.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
     gene            674..>915
                     /gene="chbA"
                     /locus_tag="OQQ19_004326"
     CDS             674..>915
                     /gene="chbA"
                     /locus_tag="OQQ19_004326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N,N'-diacetylchitobiose transporter subunit
                     IIA"
                     /protein_id="HCS1805683.1"
                     /translation="MMDLDNIPDTQTEAEELEEVVMGLIINSGQARSLAYAALKQAKQ
                     GDFAAAKAMMDQSRMALNEAHLVQTKLIEGDAGEGK"
BASE COUNT          221 a          224 c          251 g          219 t
ORIGIN      
        1 ttcttcggta ttcatggcgc gctggcgctg accgcactgg acaacggcat tatgacgctg
       61 tgggcgctgg aaaatatcgc gacctatcag caatatggtt ccgtcgaagc ggcgctggca
      121 gccggtaaga ccttccatat ctgggccaag ccgatgctgg actcctttat tttccttggg
      181 gcagtggtgc gactttaggc ctgatcctgg ctatctttat cgcctctcgc cgtgctgatt
      241 atcgtcaggt ggcaaaactg gcgctgccgt ccggcatctt ccagattaac gaaccgattc
      301 tgtttggtct gccaattatc atgaacccgg tgatgtttat cccgtttgta ctggtacaac
      361 cgattctggc ggcaatcacc ctcgcagcgt actacatggg cattattcct ccggtgacca
      421 atattgcacc gtggaccatg ccaaccggtc tgggagcctt ctttaacacc aacggtagcg
      481 tcgctgcatt gctggtcgca ctcttcaacc ttggtatcgc aacgttaatt tatctgccct
      541 ttgttgtggt ggctaacaaa gcgcaaaacg cgattgataa agaagagagc gaagaagata
      601 tcgctaacgc cctgaaattt taatcgatgc cggtacggtt aatcgtgccg gtaagaagag
      661 agaggaacga tgtatgatgg atctcgataa cattcccgat acgcaaacag aagctgaaga
      721 gctggaagaa gtggtgatgg ggcttatcat caactccgga caagcgcgca gcctggcgta
      781 tgcggcactg aaacaggcga agcagggcga ttttgccgca gcaaaagcca tgatggatca
      841 gtcacggatg gcattgaatg aagcgcatct ggtacagacg aaactgattg aaggcgatgc
      901 gggcgaaggt aagat
//
LOCUS       DAJVSY010000358          914 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.364, whole genome shotgun sequence.
ACCESSION   DAJVSY010000358 DAJVSY010000000
VERSION     DAJVSY010000358.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 914)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 914)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..914
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.364"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>914
                     /gene="tuf"
                     /locus_tag="OQQ19_004327"
     CDS             <1..>914
                     /gene="tuf"
                     /locus_tag="OQQ19_004327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HCS1805684.1"
                     /translation="AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL
                     LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL
                     EGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII
                     KVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAK
                     PGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMP
                     GDNIKMVVTLIHPIAMDDGLRFAIREGGR"
BASE COUNT          212 a          230 c          264 g          208 t
ORIGIN      
        1 gcacacgtag actgcccggg gcacgccgac tatgttaaaa acatgatcac cggtgctgct
       61 cagatggacg gcgcgatcct ggtagttgct gcgactgacg gcccgatgcc gcagactcgt
      121 gagcacatcc tgctgggtcg tcaggtaggc gttccgtaca tcatcgtgtt cctgaacaaa
      181 tgcgacatgg ttgatgacga agagctgctg gaactggttg aaatggaagt tcgtgaactt
      241 ctgtctcagt acgacttccc gggcgacgac actccgatcg ttcgtggttc tgctctgaaa
      301 gcgctggaag gcgacgcaga gtgggaagcg aaaatcctgg aactggctgg cttcctggat
      361 tcttacattc cggaaccaga gcgtgcgatt gacaagccgt tcctgctgcc gatcgaagac
      421 gtattctcca tctccggtcg tggtaccgtt gttaccggtc gtgtagaacg cggtatcatc
      481 aaagttggtg aagaagttga aatcgttggt atcaaagaga ctcagaagtc tacctgtact
      541 ggcgttgaaa tgttccgcaa actgctggac gaaggccgtg ctggtgagaa cgtaggtgtt
      601 ctgctgcgtg gtatcaaacg tgaagaaatc gaacgtggtc aggtactggc taagccgggc
      661 accatcaagc cgcacaccaa gttcgaatct gaagtgtaca ttctgtccaa agatgaaggc
      721 ggccgtcata ctccgttctt caaaggctac cgtccgcagt tctacttccg tactactgac
      781 gtgactggta ccatcgaact gccggaaggc gtagagatgg taatgccggg cgacaacatc
      841 aaaatggttg ttaccctgat ccacccgatc gcgatggacg acggtctgcg tttcgcaatc
      901 cgtgaaggcg gccg
//
LOCUS       DAJVSY010000359          889 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.365, whole genome shotgun sequence.
ACCESSION   DAJVSY010000359 DAJVSY010000000
VERSION     DAJVSY010000359.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 889)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 889)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.365"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..201
                     /locus_tag="OQQ19_004328"
     CDS             <1..201
                     /locus_tag="OQQ19_004328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HCS1805685.1"
                     /translation="YEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIY
                     RQLTDEVLALRLSENGSQLHHS"
     gene            409..678
                     /locus_tag="OQQ19_004329"
     CDS             409..678
                     /locus_tag="OQQ19_004329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805686.1"
                     /translation="MAQVNMSVRIDAELKDAFMAAAKSMDRNGSQLIRDFMRQTVERQ
                     HNSWFRDQVAAGRQQLECGDVLPHDMVESSAAAWRDEMSRKIADK"
     gene            675..889
                     /locus_tag="OQQ19_004330"
                     /pseudo
     CDS             675..889
                     /locus_tag="OQQ19_004330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001585073.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
BASE COUNT          227 a          202 c          264 g          196 t
ORIGIN      
        1 tatgagatgc tggagaatga gtaccctcag agggtggctg accggctgaa agcatcaggt
       61 ctgagcggtg atgcggatgc ggagagggaa gccggtgcac aggtgatgcg tgagactgaa
      121 cagcagattt accgtcagct gactgacgag gtactggccc tgcgattgtc tgaaaacggc
      181 tcacaactgc accattcata atcacatcgc ataaaactgt cagcgccagt gataggacag
      241 gtgaaacctg tcaatacgta ccggcttacg ccgggcttcg gcggttttac tcctctgcca
      301 tatgcaacaa cggagtgccg ccttacatgc cgctggcgcg gcatatcctg gtgacgatat
      361 ctgaacagtt atatactgtg tatatacgtg gtaatgacga ggtggcaaat ggcacaggtt
      421 aatatgagtg taagaatcga cgcagaactg aaggatgctt ttatggccgc tgcaaaaagc
      481 atggaccgta atggctctca gttaatccgg gattttatgc gccagaccgt tgaacggcag
      541 cacaattctt ggttccgtga ccaggttgcg gcaggccgtc agcaactcga atgcggtgat
      601 gtgcttcccc atgacatggt cgaatcctct gctgctgcat ggcgggatga aatgagcagg
      661 aagattgctg ataaatgatg gagatgttct ggaccatgct ggccatccag gacaggaagc
      721 gcattcgtag tacattgcgg agcagaacct gatggccgcc attgaaccgg acgaacggat
      781 tggttattca gccagcagcc tggcagggca gccgtataaa ggccgcaacg gtcgtgtgga
      841 aggaacatct ggaccacaca aggtagcgtg taacgttatt ttgtgtgaa
//
LOCUS       DAJVSY010000360          884 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.366, whole genome shotgun sequence.
ACCESSION   DAJVSY010000360 DAJVSY010000000
VERSION     DAJVSY010000360.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 884)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 884)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..884
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.366"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..510
                     /locus_tag="OQQ19_004331"
     CDS             <1..510
                     /locus_tag="OQQ19_004331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ail/Lom family outer membrane beta-barrel
                     protein"
                     /protein_id="HCS1805687.1"
                     /translation="LSAGYLQPHTDMPGSDDLKGINVKYRYEFTDTLGLVTSFSYANA
                     EDEQKTHYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYL
                     RVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEGSGSGDWRTDG
                     FIVGVGYKF"
     gene            574..>884
                     /locus_tag="OQQ19_004332"
     CDS             574..>884
                     /locus_tag="OQQ19_004332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004981847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS1805688.1"
                     /translation="MAVKISGVLKDGAGKPVVNCAIELRARRTSPTVVAHVVATCVTD
                     NNGAYVIEAEPGYYEVALHCNGWQPTRVGDIDVAPTDAPGTLNAFLNAPKDGDLRPEV
                     M"
BASE COUNT          195 a          202 c          284 g          203 t
ORIGIN      
        1 ctgagcgccg ggtatcttca gccccatact gatatgccag gcagcgatga cctgaagggc
       61 attaacgtga aataccgtta tgagtttacg gacacgttgg ggctggtgac gtcattcagc
      121 tatgccaacg ctgaagatga gcaaaaaacg cattacagcg atacccgctg gcatgaggat
      181 tccgtgcgta accgctggtt cagcgtgatg gcggggccgt ctgtgcgcgt gaatgaatgg
      241 ttcagcgcgt atgcgatggc gggcgtggct tacagccgtg tgtcgacctt ctccggggat
      301 tatctccgcg taactgacaa caaggggaaa acgcacgatg tgctgaccgg gagtgatgac
      361 aaccgccaca gcaacacgtc tctggcgtgg ggggctggcg tgcagtttaa cccgaccgaa
      421 tccgtggcca ttgaccttgc ttatgaaggt tccggcagtg gcgactggcg cactgacggt
      481 ttcatcgtgg gtgtcggtta taagttctga ttagccaggt aacacagtgt tatgacagcc
      541 cgctggttca ggcgggcttt ttgtggggtg aatatggcag taaagatttc aggtgtactg
      601 aaagatgggg cgggtaaacc tgtcgtaaat tgtgcgattg aactgcgggc cagaagaacc
      661 agtccgaccg ttgtggcaca cgttgttgcc acttgcgtga cggacaataa cggtgcttat
      721 gtgattgagg ctgagccggg gtattacgag gttgcgcttc actgtaacgg ctggcagcca
      781 acccgtgtcg gggatattga tgtggcaccg actgatgcac cggggacact gaacgcgttt
      841 ctgaatgcac caaaggatgg tgatttacgt ccggaggtga tgaa
//
LOCUS       DAJVSY010000361          867 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.367, whole genome shotgun sequence.
ACCESSION   DAJVSY010000361 DAJVSY010000000
VERSION     DAJVSY010000361.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 867)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.367"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            269..361
                     /locus_tag="OQQ19_004333"
     CDS             269..361
                     /locus_tag="OQQ19_004333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001441976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HCS1805689.1"
                     /translation="MNDLPVRQTPMFTLLREAGFSSSPQGLDWG"
     gene            complement(412..759)
                     /gene="grxD"
                     /locus_tag="OQQ19_004334"
     CDS             complement(412..759)
                     /gene="grxD"
                     /locus_tag="OQQ19_004334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monothiol glutaredoxin 4"
                     /protein_id="HCS1805690.1"
                     /translation="MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACG
                     ERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE
                     TAAKYKSEEPDAE"
BASE COUNT          187 a          227 c          234 g          219 t
ORIGIN      
        1 tacaccagtg gcgctctctg ccaacgatcc ggctaatgtg tggggaaatc ttctgccctg
       61 gcctgcacat ccggcaacgc tggttccaac gcgtcgggcg ggtgcgctgg tggtcgtttc
      121 tagcggcaaa ttgttactct atctggcgca aggtggcaaa aaaatgctgg tctggcagga
      181 aaaagaggaa ttactcgccc cagaggtttt ccacgcgctg actaccgcac tgcgtcgcga
      241 accacggctg cgctttacgc taacagaagt gaatgatcta ccggtccggc aaacgccgat
      301 gtttacgctg ctgcgtgagg cgggattttc aagttcgcca caagggctgg attggggata
      361 gagaaaggac tgacggatgc ccgttcgcat ccgtcagtat tgcaggacgg attattccgc
      421 gtccggctct tcagacttgt atttagcggc agtttctttg atcagctgct gcagttcgcc
      481 acgctgatac atttcgatca cgatatcaca accgccgacc agctcgccgt caacccacag
      541 ttgcgggaag gtcggccagt tagcatattt cggcagttcc gcacgaatgt ccggattctg
      601 cagaatatca acataggcaa aacgttcgcc acatgcggca agcgcctgga ctgcctgggc
      661 agagaaaccg cagctcggca gtttcggtga acctttcatg tacagcagga tcgggttttc
      721 agcaatctgg cgttggattt tttcgatagt ggtgctcatt gtcttgcttc ctcaaacttc
      781 tttacggcag taatctgaca ttgtagcggg tcagtgcggc atcggaaaat aacattttca
      841 tcacgctttt gctattttat ccctttg
//
LOCUS       DAJVSY010000362          820 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.368, whole genome shotgun sequence.
ACCESSION   DAJVSY010000362 DAJVSY010000000
VERSION     DAJVSY010000362.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.368"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>820
                     /locus_tag="OQQ19_004335"
     CDS             <1..>820
                     /locus_tag="OQQ19_004335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HCS1805691.1"
                     /translation="DVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYVRDDRN
                     AGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEAACMAH
                     ARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARKARAAPLMQSLY
                     DRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRGVAVGRK
                     NWLFAGSDSGGEHAVVLYSLIGTCRLNNVEPEKWLRYVIEHLQDWPANRVRDLLP"
BASE COUNT          202 a          216 c          247 g          155 t
ORIGIN      
        1 gacgtcctgc gccagtatgt gctgatgccc ggtaaagttc atgcggatga tatccccgtt
       61 ccggtccagg agccgggcag tggtaaaaca agaactgccc ggctgtgggt ctatgtccgt
      121 gatgaccgta acgccggttc acagatgccc ccggcggtct ggttcgcgta cagcccggac
      181 cggaaaggta tccatccaca gaatcacctg gctggttaca gcggtgtgct tcaggcagat
      241 gcttacggtg gttaccgggc gttatacgaa tccggcagaa taacggaagc cgcgtgtatg
      301 gcccatgccc ggagaaaaat ccacgatgtg catgcaagag tgccaaccga catcaccacg
      361 gaagccctgc agcgtatcgg tgaactgtat accatcgagg cagaagtccg gggatgttca
      421 gcagaacagc gtctggcggc aagaaaagca agagccgcgc cactgatgca gtcactgtat
      481 gaccggatac agcaacagat gaaaacactg tcgcgtcact cggatacggc aaaagcgttc
      541 gcatacctac tgaaacagtg gaaggccctg aacgtgtact gcagtaatgg ctgggtggaa
      601 atcgacaaca acatcgcaga gaacgcctta cggggagtgg ccgtaggccg gaaaaactgg
      661 ctcttcgcgg gttccgacag cggtggcgaa catgcggtgg tgttgtactc gctgatcggc
      721 acatgccgtc tgaacaatgt agagccagaa aaatggctgc gttacgttat tgagcatctc
      781 caggactggc cggcaaaccg ggtacgcgat ctgttgccct
//
LOCUS       DAJVSY010000363          820 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.369, whole genome shotgun sequence.
ACCESSION   DAJVSY010000363 DAJVSY010000000
VERSION     DAJVSY010000363.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.369"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            122..>820
                     /locus_tag="OQQ19_004336"
     CDS             122..>820
                     /locus_tag="OQQ19_004336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805692.1"
                     /translation="MLPSISINNTSATYPESINENNNDEVNGLVQELKNLFNGKEGIS
                     TCIKHLLELIKNAIRVNDDPYRFNINNSSVTYIDIGSNDTDHITIGIDNQEPIELPAN
                     YKDKELVRTIINDNIVEKTHDINNKEMIFSALKEIYDGAPSFIFDKISHKLRHTVTEF
                     DESGKSEPTDLFTWYGKDKKGDSLAIVIKNKNGNDYLSLGYYDQDDYHIQRGIRINGD
                     SLTQYCSENARSASA"
BASE COUNT          313 a          146 c          136 g          225 t
ORIGIN      
        1 ggctattgtg cgctcataca ctcaaattaa agataggttc taaataaatg agcgtttttt
       61 gatagtctat ttcattaggt aatatatatt tgtaacaaat caatcaaaat ggaataaaat
      121 catgctacca tctatttcaa tcaacaatac cagcgcaact tacccagaat ccattaatga
      181 aaataacaat gatgaagtta atggattagt acaagagctc aaaaaccttt ttaatggtaa
      241 ggaaggaata agcacctgta ttaaacatct acttgagctt ataaaaaacg ccatacgagt
      301 aaacgacgat ccttatagat ttaatattaa taattcctca gttacttata ttgatattgg
      361 ctccaatgat acagaccata ttactattgg tatcgacaac caagaaccaa tagaattacc
      421 tgcgaactat aaagacaaag aactcgtccg tactatcatt aatgacaaca tagttgagaa
      481 gactcatgat atcaataaca aggaaatgat cttcagcgca ttaaaagaaa tatatgatgg
      541 agctcctagt tttatcttcg ataagatatc acacaaactc agacatacgg taacggaatt
      601 tgatgagagc gggaaaagcg aaccaacgga cttatttacc tggtacggta aagataaaaa
      661 aggcgactct ctcgctattg taattaaaaa taaaaacgga aatgattact tatccctcgg
      721 ttactacgat caggacgact accacattca aagaggaatt cgtattaatg gtgatagtct
      781 cacccaatat tgtagtgaaa acgccaggag tgcttcagcg
//
LOCUS       DAJVSY010000364          811 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.370, whole genome shotgun sequence.
ACCESSION   DAJVSY010000364 DAJVSY010000000
VERSION     DAJVSY010000364.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 811)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 811)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.370"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..346
                     /locus_tag="OQQ19_004337"
     CDS             <1..346
                     /locus_tag="OQQ19_004337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001613027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805693.1"
                     /translation="VMCLTKPAFSYYIAAYLKLFIENYYEADALVDTILNMLTPPVRN
                     GIPSTTWIAKNLDCFSRNKRVAISFTFQYLCNEYNDPNTEKALNIYWGQYLNESLLIK
                     NVQNSKNKCKSQ"
     gene            complement(407..586)
                     /locus_tag="OQQ19_004338"
     CDS             complement(407..586)
                     /locus_tag="OQQ19_004338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005006008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805694.1"
                     /translation="MVAVAAAVTDALLVFFRQLAPFVVLPALGIFIIHGTVRQAVGFI
                     VMPERDQALMSLTVI"
     gene            591..794
                     /locus_tag="OQQ19_004339"
     CDS             591..794
                     /locus_tag="OQQ19_004339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000977355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS domain-containing protein"
                     /protein_id="HCS1805695.1"
                     /translation="MMKNQMEPEYTPLRKIHLYHCDHRGLPLALIRSDGRTGWRVEYD
                     EWGNLLSEDNPHRERSSEVHFLY"
BASE COUNT          251 a          169 c          188 g          203 t
ORIGIN      
        1 tgtcatgtgt ctcactaaac cagcattctc atattatatt gcagcctatt taaaactttt
       61 tattgaaaat tattacgaag ctgatgcttt agtggatact attttaaata tgctcactcc
      121 tcctgttagg aatggtatcc ccagcactac atggatagca aaaaatcttg attgctttag
      181 tcgtaataaa agggtggcta tttcttttac attccaatat ttatgtaatg aatataatga
      241 tccaaatact gaaaaggcgt taaatatata ttggggacag tatctgaatg aatcattgct
      301 tattaaaaat gtacagaact ctaaaaataa atgtaaatca cagtaagaca gaaccaagca
      361 gaaatcgtgg gcgtggttcg caccctgacg gagggtgtag cgtgtactag atcacagtga
      421 gcgacatcaa agcttggtca cgttctggca ttacgatgaa gccgaccgcc tgacgcaccg
      481 taccgtgaat gatgaagatg ccgagtgctg gcagtacaac gaacggggct agctgacgga
      541 aaaagacgag cagcgcatcc gtgacggcgg cagccacagc caccattatc atgatgaaaa
      601 accagatgga gccggaatac acgccgctgc gtaaaattca cctgtaccac tgcgaccacc
      661 ggggactgcc gctggcgctg atacgcagtg acggccgaac cggatggcgt gtagagtatg
      721 acgaatgggg caacctgctg agtgaggata acccgcacag ggaaagatca tcagaagttc
      781 actttttgta ctaaataatt cgcattttat g
//
LOCUS       DAJVSY010000365          798 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.371, whole genome shotgun sequence.
ACCESSION   DAJVSY010000365 DAJVSY010000000
VERSION     DAJVSY010000365.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.371"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            84..284
                     /locus_tag="OQQ19_004340"
     CDS             84..284
                     /locus_tag="OQQ19_004340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000095744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlcI/YnfO family protein"
                     /protein_id="HCS1805696.1"
                     /translation="MSSKNRTRRTTTRNIRFPNQMIEQINIALDLKGSGNFSAWVIEA
                     CRRRLATDATHLRPASMKNNEK"
     gene            complement(416..742)
                     /locus_tag="OQQ19_004341"
     CDS             complement(416..742)
                     /locus_tag="OQQ19_004341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000828066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HCS1805697.1"
                     /translation="MKRNLPLIILLPSLVMGCTQHKTDMPRQLVKALPQYPAYAAANY
                     IKGRVDVKFDIGADGTVTRIEFIRSEPHHLFDEQVVKAMAKWRFEKDRPCKGVKKTFI
                     FSPSAP"
BASE COUNT          259 a          190 c          151 g          198 t
ORIGIN      
        1 tcgtattgat tgatctgcat caaattaacg taaaagcaac ttcagataat acaaatcagc
       61 aacactgaat atggggaaac attatgtcat caaagaacag aacccgcaga acaacaaccc
      121 gcaacatccg atttccaaac cagatgattg aacaaattaa catcgctctt gatctgaaag
      181 gttcaggaaa cttttcagcg tgggttattg aagcctgcag gagaaggctg gcaacagatg
      241 caacgcatct gcgcccggcc agcatgaaaa ataacgagaa atgaacgttc ggttacagga
      301 gcaggtaccc actgtcctcc aacaatattt catcttcata tccgacggaa caagacttac
      361 cctgccggga tgtacagaat aacaacagag tgataattaa tttctgatga aataatcagg
      421 gtgcagaagg actaaagata aacgttttct tcacgccttt acacggcctg tccttctcaa
      481 atcgccattt tgccatcgcc tttacaacct gctcatcaaa caaatggtgc ggctctgaac
      541 ggataaactc aattcgggtg acagtaccat cagcaccaat atcaaacttc acatcaaccc
      601 gtccctttat ataatttgcc gctgcatagg ccggatattg tggtaatgcc ttaaccaact
      661 gtcggggcat atctgtttta tgttgcgtac agcccataac cagagaaggc aacaaaataa
      721 ttaacggaag gtttcttttc attttcattc ccggcacaga taagaataag tcttattcta
      781 acaatgccac cctgtcgg
//
LOCUS       DAJVSY010000366          797 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.372, whole genome shotgun sequence.
ACCESSION   DAJVSY010000366 DAJVSY010000000
VERSION     DAJVSY010000366.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.372"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            9..>797
                     /gene="fdrA"
                     /locus_tag="OQQ19_004342"
     CDS             9..>797
                     /gene="fdrA"
                     /locus_tag="OQQ19_004342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase FdrA"
                     /protein_id="HCS1805698.1"
                     /translation="MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKA
                     LLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGAGSSQSL
                     TQVRRWDSACQKLSDANLALISVAGEYAAELANQALERNLNVMMFSDNVTLEDEIQLK
                     TRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIAQAGE
                     GITHAIGLGERDLSREVGGISALTALEMLSADEKSEVLAFVSKPP"
BASE COUNT          192 a          181 c          247 g          177 t
ORIGIN      
        1 gagttgttat gatccacgcc tttattaaaa aagggtgttt tcaggattcg gtcagtttaa
       61 tgattatttc acgaaaactc agcgaatcag aaaatgttga tgatgtttcc gtaatgatgg
      121 gtacgcccgc caataaagcg ttattagata ccacaggttt ctggcatgac gattttaata
      181 acgccacgcc gaacgatatt tgcgtggcaa ttcgtagcga agcggcggat gcggggatcg
      241 cgcaggcgat tatgcagcag cttgaagagg cgctaaaaca actggcgcag ggggcaggca
      301 gcagccagtc cttgacgcag gtgcgtcgct gggacagtgc ctgtcagaaa ttatccgatg
      361 ccaatctggc gctgatttca gtggctggcg agtatgcggc ggagctggcg aatcaggcgc
      421 tggagcgcaa cctcaacgtg atgatgttct ccgataacgt cacgctggaa gatgaaatcc
      481 aacttaaaac ccgcgcgcga gaaaaaggct tgctggtgat ggggccggac tgcggtacgt
      541 cgatgattgc cggcacgccg ctggcttttg ctaacgtgat gccggaaggc aacattggcg
      601 tcattggcgc ttccggtacc gggattcagg aactgtgttc gcagattgcg caggcagggg
      661 agggaattac tcacgcgatt ggtcttggcg agcgcgacct cagccgtgaa gtaggcggca
      721 tcagtgcgct gacggcgctg gaaatgctca gtgcagacga gaaaagcgaa gtgctggcat
      781 ttgtttcaaa gccacct
//
LOCUS       DAJVSY010000367          789 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.373, whole genome shotgun sequence.
ACCESSION   DAJVSY010000367 DAJVSY010000000
VERSION     DAJVSY010000367.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.373"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>789
                     /locus_tag="OQQ19_004343"
     CDS             <1..>789
                     /locus_tag="OQQ19_004343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="exonuclease"
                     /protein_id="HCS1805699.1"
                     /translation="RYEKGGKDGITMTFIGPSPSVQDKSASTDNTNINGEDMTEIEES
                     MLLPVSGQELPIRWLAQHGSEKPVTHVSRDELQALHIARAEELPAVTALAISHKTSLL
                     DSLEIRDLHKLVRDTDKVFPNPGNSDLGLITAFFEAYLDADYTVRGLLTKEWMKGNRV
                     SRITRTASGANAGGGNKTDRNPNLVHTLDTLDVEIAAATLPMDFNIYEIPGSVYRRAK
                     EVVLKKESPFKEWSAALRAPPGILDYSRAAIFALIRSAHPEFYH"
BASE COUNT          213 a          212 c          179 g          185 t
ORIGIN      
        1 accgctatga aaaaggcggg aaagatggca tcacaatgac atttatcggc ccttccccct
       61 ctgttcagga caaatcagcc agcactgata ataccaacat caacggcgaa gacatgactg
      121 agattgagga gagcatgctt ctacctgtct ccggtcagga actgcccatt cgttggcttg
      181 ctcaacacgg cagcgaaaaa ccagtaacgc acgtttcacg cgacgaactc caggcattac
      241 acattgcacg ggctgaagaa ctaccggctg ttactgccct ggctatttcg cataaaacca
      301 gtctgctcga ctcgctggag attcgcgacc tccacaaact ggttcgtgac actgacaaag
      361 ttttccctaa tcctggtaat tcagacctgg gactaataac tgcttttttc gaagcatact
      421 tggacgctga ctacactgtt cggggcctgc tgacaaaaga gtggatgaaa ggaaatcgtg
      481 tttcacgcat cacccgcacg gcttccggtg ctaatgctgg tggtgggaac aaaaccgatc
      541 gcaatccgaa tttagtacac accctcgaca cactggatgt ggagattgca gcagccacac
      601 ttccgatgga ttttaatatt tatgaaattc cgggcagcgt ttatcgtcgc gcaaaagaag
      661 tagtcctgaa aaaagaaagt ccgttcaaag aatggtccgc agcacttcgt gcacccccgg
      721 gtattctgga ctattcccgc gccgctattt ttgcacttat ccgaagcgca caccctgaat
      781 tttatcact
//
LOCUS       DAJVSY010000368          756 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.374, whole genome shotgun sequence.
ACCESSION   DAJVSY010000368 DAJVSY010000000
VERSION     DAJVSY010000368.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 756)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.374"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            159..588
                     /locus_tag="OQQ19_004344"
                     /pseudo
     CDS             159..588
                     /locus_tag="OQQ19_004344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747467.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          188 a          150 c          242 g          176 t
ORIGIN      
        1 tgcacggagc gggaatttgc gacaattcct gccggtatca acgccgacgg catgtattgc
       61 cctgaatgcg gtacggttca ctggccggat ggcgttattc cgcctttctg atgcttcccc
      121 gttttgccga tatttttcag cagggaaacc gatggcttaa ctggctggag aagcagccgg
      181 tgcagatgag ccgcctggaa cattatgccg gtcaggatga aattggcctg cgttacaaca
      241 gccaccggac aaaacgagaa gaaaaccttg tgatgagtgg cgacgagttt atggaaaggt
      301 tctcctggca tgtggcggat aaggggttcc ggatggtgat acggggtcct gagtccggtg
      361 aagcggcgat tactggaaga tgtggtgtac gccataacgg agacagtgag aaaaacggcg
      421 aggcaaatca caaggagagg gatgtatcag cagtgactga aggttgaccc gctgaagtgc
      481 gagctgtgcg gaggtcagat gcggtttacg gggctgaaga ggggttaccg tctggcagag
      541 caggttatga tgcatgagcc gctggctcga atacggtggt gcggctgaga gtcgcagagg
      601 ggaagttgcg tccatgttga ggggaacgga gcaaaaaacc atcagagata cattgaatca
      661 atcaatgtaa gcaatattaa gtgtctatac cgattacttg atgatcaggt tgtgttgaat
      721 aaacgcgcat tcttcggtgc ttttttaatc ttttgg
//
LOCUS       DAJVSY010000369          685 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.375, whole genome shotgun sequence.
ACCESSION   DAJVSY010000369 DAJVSY010000000
VERSION     DAJVSY010000369.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.375"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            201..389
                     /locus_tag="OQQ19_004345"
     CDS             201..389
                     /locus_tag="OQQ19_004345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1187 family protein"
                     /protein_id="HCS1805700.1"
                     /translation="MYKITATIEKEGGSPASWTRYSKTKLTKSECEKMLSGEKEAGVS
                     REQKVKLINFNCEKLQSS"
     gene            509..655
                     /gene="xisR"
                     /locus_tag="OQQ19_004346"
     CDS             509..655
                     /gene="xisR"
                     /locus_tag="OQQ19_004346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309957.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excisionase family protein"
                     /protein_id="HCS1805701.1"
                     /translation="MVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKR
                     GIIW"
BASE COUNT          235 a          128 c          161 g          161 t
ORIGIN      
        1 cccgctaatg ggaaagaatc aaaggtatgg actggccgac aatcaaagct ggtcgtaatg
       61 cactatggat tgaactggaa ggcgttgaat atgcattccc ggatccacaa acacaaaacg
      121 aaacgcaaca agcaggatac gatgagaata ttccggtgta aaaccaagtg cattttggga
      181 aaatattaat ggaggtgttc atgtataaaa ttacagccac tattgaaaag gaaggtggtt
      241 ctcctgccag ctggacaaga tactcaaaga caaaactaac gaaatcagaa tgcgaaaaaa
      301 tgctctcagg ggaaaaagaa gctggcgttt ccagagagca gaaagtaaaa ctgataaatt
      361 ttaattgcga gaaacttcag tcctcgtgaa ttgcattgta ttcaaattaa aacttcatag
      421 ctgattatta ataatcaaca tcgggcgtca atttcagcct aacattggcg cctgccagag
      481 gtgatgcgat ggctttaatg aagagtggat ggttgaatac ggcctgatgc ttcgcactgg
      541 tctgggtgcc agacaaattg aagcataccg ccagaactgt tgggtggaag gcttccactt
      601 caaacgagta tctcctttag ggaagccaga cagtaagcga gggattatct ggtaaaacta
      661 tccgaacata aatcagttta tcaaa
//
LOCUS       DAJVSY010000370          680 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.376, whole genome shotgun sequence.
ACCESSION   DAJVSY010000370 DAJVSY010000000
VERSION     DAJVSY010000370.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 680)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.376"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(88..>680)
                     /locus_tag="OQQ19_004347"
     CDS             complement(88..>680)
                     /locus_tag="OQQ19_004347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000680621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS1805702.1"
                     /translation="CGGGDYAINAALTEKRIKAVVSITGVNIGRLFREGFSNYDPIGA
                     LNAMASQRTKEARGGELQINELLPASLDAAKAHGLTERDVYEATDYYKTPRGQQPGGA
                     TKMLFSHAQKTLAWDAFAFTEVLLTQPVMVVVGEKVGAFGAYRDGLEVYGRAMVSQDR
                     QLVSLPDFSHYELYDKPEAVQEALEKVIPFFNPHLG"
BASE COUNT          172 a          186 c          140 g          182 t
ORIGIN      
        1 cgctattgcc agtacacctc acatggcggg ctatctgacc gccagcacca agaatcagta
       61 catttttcat aatatttctc atgaaactta tcccagatgg gggttgaaaa aaggaataac
      121 tttttccagc gcctcctgaa ctgcttccgg tttgtcatac agttcataat gtgagaaatc
      181 gggtaatgaa actaactgac gatcctgcga aaccatcgcc cggccataga cttccagtcc
      241 atcacgataa gcaccgaagg caccgacttt ttcaccaacg actaccatca ccggctgagt
      301 cagtaacact tcagtaaatg cgaaggcatc ccaggccagc gttttctgtg catgtgagaa
      361 caacattttt gtcgcacctc ccggttgttg cccgcgtggt gttttatagt agtcagttgc
      421 ttcataaaca tcgcgttcgg tcagtccatg ggcttttgct gcatccaggc tggcgggaag
      481 taattcgttg atctgtaatt ctccaccacg agcctctttg gttcgttgcg acgccattgc
      541 attcaatgcg ccaatcggat cgtaattgct gaaaccttcc cgaaaaagac gcccgatatt
      601 aacacccgta atactcacta ctgctttaat tcgtttttct gtcagcgcgg cattaatggc
      661 atagtcacca cccccacaca
//
LOCUS       DAJVSY010000371          679 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.377, whole genome shotgun sequence.
ACCESSION   DAJVSY010000371 DAJVSY010000000
VERSION     DAJVSY010000371.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.377"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            66..>679
                     /gene="istA"
                     /locus_tag="OQQ19_004348"
     CDS             66..>679
                     /gene="istA"
                     /locus_tag="OQQ19_004348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS21-like element IS100 family transposase"
                     /protein_id="HCS1805703.1"
                     /translation="MVTFETVMEIKILHKQGMSSRAIARELGLSRNTVKRYLQAKSEP
                     PKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIR
                     SLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVPGYSRMLYIEFTDNMR
                     YDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRF"
BASE COUNT          164 a          176 c          174 g          165 t
ORIGIN      
        1 gatccacacc caacgcctga aatcagatcc agggggtaat ctgctctcct gattcaggag
       61 agcttatggt cacttttgag acagttatgg aaattaaaat cctgcacaag cagggaatga
      121 gtagccgggc gattgccaga gaactggggc tctcccgcaa taccgttaaa cgttatttgc
      181 aggcaaaatc tgagccgcca aaatatacgc cgcgacctgc tgttgcttca ctcctggatg
      241 aataccggga ttatattcgt caacgcatcg ccgatgctca tccttacaaa atcccggcaa
      301 cggtaatcgc tcgcgagatc agagaccagg gatatcgtgg cggaatgacc attctcaggg
      361 cattcattcg ttctctctcg gttcctcagg agcaggagcc tgccgttcgg ttcgaaactg
      421 aacccggacg acagatgcag gttgactggg gcactatgcg taatggtcgc tcaccgcttc
      481 acgtgttcgt tgctgttccc ggatacagcc gaatgttgta catcgaattc actgacaata
      541 tgcgttatga cacgctggag acctgccatc gtaatgcgtt ccgcttcttt ggtggtgtgc
      601 cgcgcgaagt gttgtatgac aatatgaaaa ctgtggttct gcaacgtgac gcatatcaga
      661 ccggtcagca ccggttcca
//
LOCUS       DAJVSY010000372          666 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.378, whole genome shotgun sequence.
ACCESSION   DAJVSY010000372 DAJVSY010000000
VERSION     DAJVSY010000372.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 666)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.378"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            1..666
                     /locus_tag="OQQ19_004349"
                     /pseudo
     CDS             1..666
                     /locus_tag="OQQ19_004349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612230.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1-like element IS1A family transposase"
BASE COUNT          151 a          175 c          191 g          149 t
ORIGIN      
        1 tctgtttcta tcagctgtcc ctcctgttca gctactgacg gggtggtgcg taacggcaaa
       61 agcactgccg gacatcagcg ctatctctgc tctcactgcc gtaaaacatg gcaactgcag
      121 ttcacttaca ccgcttctca acccggtacg caccagaaaa tcattgatat ggccatgaat
      181 ggcgttggat gccgggcaac tgcacgcatt atgggcgttg gcctcaacac gattttacgt
      241 cacttaaaaa actcaggccg cagtcggtaa cctcgcgcat acagccgggc agtgacgtca
      301 tcgtctgcgc ggaaatggac gaacagtggg gctatgtcgg ggctaaatcg cgccagcgct
      361 ggctgtttta cgcgtatgac agtctccgga agacggttgt tgcgcacgta ttcggtgaac
      421 gcactatggc gacgctgggg cgtcttatga gcctgctgtc accctttgac gtggtgatat
      481 ggatgacgga tggctggccg ctgtatgaat cccgcctgaa gggaaagctg cacgtaatca
      541 gcaagcgata tacgcagcga attgagcggc ataacctgaa tctgaggcag cacctggcac
      601 ggctgggacg gaagtcgctg tcgttctcaa aatcggtgga gctgcatgac aaagtcatcg
      661 ggcatt
//
LOCUS       DAJVSY010000373          656 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.379, whole genome shotgun sequence.
ACCESSION   DAJVSY010000373 DAJVSY010000000
VERSION     DAJVSY010000373.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 656)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.379"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            215..574
                     /locus_tag="OQQ19_004350"
     CDS             215..574
                     /locus_tag="OQQ19_004350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001331208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1889 family protein"
                     /protein_id="HCS1805704.1"
                     /translation="MQIKVIYSLIDNMVNFKDKNMPAVIDKALDFIGAMDVSAPTPSS
                     MNESTAKGIFKYLKELGVPASAADITARADQEGWNPGFTEKMVGWAKKMEFGERTVIK
                     NPEYFSTYMQEELKALV"
BASE COUNT          211 a          127 c          131 g          187 t
ORIGIN      
        1 aactatataa ataaacataa ccatgccgtt gtgttcgccc ttcgattagc acctctggtt
       61 ttctttctta gctgaacaat ctggttatag cgtgcggact gaccgttaat tttctccatc
      121 ttactggata acacaccatg agctgctacc tttaaaacac ctgaatgtca acaggttaac
      181 tcgtgccata tcgttataat ccctttgata ttagatgcaa attaaggtca tatatagcct
      241 tatcgataac atggttaatt ttaaggataa gaatatgcct gctgtaatag ataaagccct
      301 ggatttcatt ggtgccatgg atgtatcagc gccaacacca agttcgatga atgaaagcac
      361 agcgaaggga atctttaaat atttaaaaga actgggagta cccgcgagtg ccgctgatat
      421 tacggcgcga gctgaccagg aaggctggaa ccctgggttc acggaaaaaa tggttggatg
      481 ggcaaaaaaa atggagtttg gtgaacgcac tgtaattaaa aatcctgaat acttttcaac
      541 atatatgcag gaagaactaa aagcactggt ctgagtttaa tttatatcag cataaatggg
      601 tcaggacgct tttaatcaca tataaaaagc gtcctttttc tcacaatcaa ataatc
//
LOCUS       DAJVSY010000374          650 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.380, whole genome shotgun sequence.
ACCESSION   DAJVSY010000374 DAJVSY010000000
VERSION     DAJVSY010000374.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 650)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.380"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(154..>650)
                     /locus_tag="OQQ19_004351"
     CDS             complement(154..>650)
                     /locus_tag="OQQ19_004351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HCS1805705.1"
                     /translation="AGLGTKDYSSHSLYVGAEAGYRYHVTEDSWIEPQAELVYGAVSG
                     KRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGE
                     TVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANF
                     RYSF"
BASE COUNT          179 a          165 c          146 g          160 t
ORIGIN      
        1 ttttttattc gctcatgttt aaggcataac aggcagataa ataatgtcag aaaaagaaag
       61 ctaataatga gagcaagagc gatatagtct gtcacagggt aatacatatt ctctccggta
      121 gaagaagggc cgcaaacgcg gcccgggctg ttatcagaaa gagtaacgga agttggcgtt
      181 gatcgcgtta tccacgttgt atttaccaaa tgccgatttc tcaaactcaa gaccaaagcg
      241 aagattatcg cgaatttcgg cgttgagacc aacattcatg agaatacgac cgtctttttc
      301 acctttgata cgtttctcac cggacgcatc acgcagtacg gtttcaccgt tggcaaacag
      361 gtcaaactgg tagccaaggc cggcgcgggc tgtgactttc cagtccttac cggagaagga
      421 tttacccaca tcaacaccgg tacgcccaat cagcggatta aagtccttat ccttcatggt
      481 cacgctcatt ccgcgatcct gccagtcgaa ccgtttacct gatacggccc cataaaccag
      541 ttctgcctgc ggctcaatcc aggagtcttc tgttacatga tagcggtagc ctgcttcagc
      601 acccacatac aaggaatgag aactgtagtc ttttgttccg agcccagcaa
//
LOCUS       DAJVSY010000375          632 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.381, whole genome shotgun sequence.
ACCESSION   DAJVSY010000375 DAJVSY010000000
VERSION     DAJVSY010000375.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 632)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.381"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            106..>632
                     /locus_tag="OQQ19_004352"
     CDS             106..>632
                     /locus_tag="OQQ19_004352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001395480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS630-like element IS630 family transposase"
                     /protein_id="HCS1805706.1"
                     /translation="MPIIAPISRDERRLMQKAIHKTHDKNYARRLTAMLMLHRGDRVS
                     DVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLRELVKHSPGD
                     FGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIRDPHKDEK
                     MAAIHKALDECSAEHP"
BASE COUNT          162 a          171 c          167 g          132 t
ORIGIN      
        1 cctaaatagc tgcgcggaat agtagatccc tttgagggaa cttagcccgg attgtgcgat
       61 ctgatcaatc gccaaatcaa aacaaatcac caaccggact gagcaatgcc gatcatagca
      121 ccaatttccc gtgacgaacg acgcctgatg cagaaagcca tccataaaac acacgataaa
      181 aattatgccc gcagactgac tgccatgctg atgctgcacc ggggcgaccg tgtcagcgac
      241 gttgccagaa cgctctgctg cgcccgttcc tctgttggac gctggattaa ctggttcacg
      301 cagtcgggtg ttgagggact gaaatcatta cctgccgggc gtgcccgtcg ctggccgttt
      361 gagcatatct gcacactgtt acgtgagctg gtaaaacatt ctcccggcga ctttggctac
      421 cagcgttcac gctggagtac agaactgctg gcaataaaaa tcaatgagat aaccggttgc
      481 cagttaaatg ccggaaccgt tcgccgctgg ttgccgtctg cggggattgt gtggcgaagg
      541 gctgcgccaa ctctgcgtat ccgtgacccg cataaagatg aaaagatggc agcaatccat
      601 aaagcactgg acgaatgcag cgcagagcat cc
//
LOCUS       DAJVSY010000376          625 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.382, whole genome shotgun sequence.
ACCESSION   DAJVSY010000376 DAJVSY010000000
VERSION     DAJVSY010000376.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.382"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(231..482)
                     /gene="dgcZ"
                     /locus_tag="OQQ19_004353"
                     /pseudo
     CDS             complement(231..482)
                     /gene="dgcZ"
                     /locus_tag="OQQ19_004353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416052.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DgcZ"
     gene            complement(522..>625)
                     /locus_tag="OQQ19_004354"
     CDS             complement(522..>625)
                     /locus_tag="OQQ19_004354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HCS1805707.1"
                     /translation="EYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA"
BASE COUNT          160 a          146 c          135 g          184 t
ORIGIN      
        1 tgggatgact aatgaacgga gataatccct cacctaaccg gccccttgtt acagttgtgt
       61 acaaggggcc tgatttttat gacggcgaaa aaaaaccgcc agtaaaccgg cggtgaatgc
      121 ttgcatggat agatttgtgt tttgctttta cgctaacagg cattttcctg cactgataac
      181 gaatcgttga cacagtagca tcagttttct caatgaatgt taaacggagc ttaaactcgg
      241 ttaatcacat tttgttcgtc aataaacata cagcgatttc ttcccgtttg cttaccctca
      301 tacattgccc ggtctgctct tccaatgacc acatccagag gctcttcagg aaatgcgcga
      361 ctgacacctg ctgtcacggt aatgttgata tgcccttcag aatgtgtgat ggcatggtta
      421 tcgactaact ggcaaattct gacacctgca cgacatgctt cttcatcatt agccgctttg
      481 aggtgtactg gcaatagcgg acactatcat ttgttctttt tttaagcagc catctgatga
      541 tatttttccc tgaaggctgc cggggagata ttccccagac gagagtgacg acgctgacga
      601 ttgtagaaaa tctcaatgta ttccc
//
LOCUS       DAJVSY010000377          604 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.383, whole genome shotgun sequence.
ACCESSION   DAJVSY010000377 DAJVSY010000000
VERSION     DAJVSY010000377.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.383"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..588
                     /locus_tag="OQQ19_004355"
     CDS             <1..588
                     /locus_tag="OQQ19_004355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein"
                     /protein_id="HCS1805708.1"
                     /translation="TITSGGNPPAFSLTPGGRLTAKNADISGNVNANSGTLNNVTINK
                     NCRVLGKLSANQIEGDLVKTVGKPFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPA
                     VAFRGAKHERKNNNIYSSCSLIVKKNGAEIYNRTTLDNTLIYTGVIDMPAGHGHMTLE
                     FSVSAWLVNGWYPTASISDLLVVVMKKATAGITIS"
BASE COUNT          160 a          140 c          161 g          143 t
ORIGIN      
        1 accattacca gcggcggtaa tcctccggca ttttccctga cacctggcgg acggctgacg
       61 gcgaaaaatg ccgatatcag cggtaacgtg aacgcgaact ccgggacgct caacaacgtc
      121 acgattaata agaactgtcg ggttctggga aaattgtccg cgaaccagat tgaaggcgat
      181 ctcgttaaaa cagtgggcaa acctttccca cgggactccc gggcaccgga gaggtggcca
      241 tcagggacca ttaccgtcag ggtttatgac gatcagccgt ttgatcggca aattgttatt
      301 cccgcggtgg cgtttcgcgg tgctaaacat gagcggaaga ataacaatat ttattcgtca
      361 tgcagcctga tagtgaagaa aaacggtgct gaaatttata accgaacgac cctggataat
      421 acgctgatat atacgggtgt tattgatatg cctgccggtc acggtcacat gacgctggag
      481 ttttctgtat cggcatggct ggtaaatggc tggtatccca cagcaagtat cagcgatttg
      541 ctggttgttg tgatgaagaa agccactgca ggcatcacga ttagctgaat tttataaccc
      601 agat
//
LOCUS       DAJVSY010000378          598 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.384, whole genome shotgun sequence.
ACCESSION   DAJVSY010000378 DAJVSY010000000
VERSION     DAJVSY010000378.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.384"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            1..598
                     /locus_tag="OQQ19_004356"
                     /pseudo
     CDS             1..598
                     /locus_tag="OQQ19_004356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611198.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
BASE COUNT          156 a          147 c          166 g          129 t
ORIGIN      
        1 attattttca acaggttgct ttcgctactt gatgcaaacg gctttattga ctggtctgcc
       61 accgcgctgg atggcagtaa tatccgggcg ctgaaatgtg ccgccggtgc tcaaaaaaac
      121 atcccgatat cgacggagat aatggcccgg gtcgctctcg cggcggtttt ggcaccaaaa
      181 tccatctggc aacagacgga agtggcctcc cgttaaatat cgtgctaagc cccggacaag
      241 ctcatgaaag ccagttcgcg caacgacttc tggacgggat tggcgttcag cgtcagaacg
      301 gcagcatgaa acgccgtgga catgcggtac tggctgataa agcgtattca gggcgcgcat
      361 tgcgcaacga gctgaaaaat aacggtataa aggcagtaat cccccgaaag tcaaatgaga
      421 aaatggcatc ggatggacgt gcacagcttg atcgtgatgc gtactgcaat cgtaatgtcg
      481 ttgaacggtg ctttgggcgg ctgaaagaat atcgccgcat cgccacgcgt tacgacaaaa
      541 cggcgagaaa ttacctggcg atggtgaaac tgggctgcat ccgactcttt tatcaacg
//
LOCUS       DAJVSY010000379          591 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.385, whole genome shotgun sequence.
ACCESSION   DAJVSY010000379 DAJVSY010000000
VERSION     DAJVSY010000379.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.385"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..486)
                     /locus_tag="OQQ19_004357"
     CDS             complement(<1..486)
                     /locus_tag="OQQ19_004357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001493460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1805709.1"
                     /translation="MQNRKWILSSLVMTFFGIPILTQFLAAVVAMLGVGLAGIIEVCN
                     ILITPTSYLLLNIFMLALGALMLFFSGRVWAGDSAPEKREIAVWRQCLFLVPGLLILV
                     GWIIALHLADYQFHQMGSGWLADLMLPWLGVLLVSVVGGEYWWIVIIPVGAHISFSLG
                     YG"
BASE COUNT          180 a          158 c          119 g          134 t
ORIGIN      
        1 gccgtacccc agcgaaaaac tgatatgcgc gccaacgggt ataatgacta tccaccagta
       61 ctcacctccg actactgaga ctaacaaaac gcccagccag gggagcataa gatcagccaa
      121 ccaacccgat cccatctggt gaaattgata atctgccaga tgcagcgcga ttatccagcc
      181 aaccaggatt aataaaccgg gtactaaaaa aagacattgt cgccagacgg ctatttctct
      241 tttttctggt gcactatcgc ctgcccatac tcgccccgag aaaaatagca ttaatgcgcc
      301 cagcgccagc ataaaaatgt tgagcagaag gtaacttgtt ggcgtgataa ggatattaca
      361 aacttcaata ataccggcaa gtccgacacc cagcatagca acaaccgccg ccaaaaattg
      421 cgtcagtatg gggatgccga aaaaagtcat taccagcgag gacaaaatcc attttctgtt
      481 ttgcattatt ctttccattc tttttgaatg gtgaaattat actccccgag tccccttgcc
      541 ccttctggac acttttccga aatgatggcg gaaaaaaacg ggaccctttg g
//
LOCUS       DAJVSY010000380          590 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.386, whole genome shotgun sequence.
ACCESSION   DAJVSY010000380 DAJVSY010000000
VERSION     DAJVSY010000380.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 590)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.386"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            244..>590
                     /locus_tag="OQQ19_004358"
     CDS             244..>590
                     /locus_tag="OQQ19_004358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1805710.1"
                     /translation="MSKKLGFALSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETR
                     VDGGNKDGLILLQTATVGEIDAGVLNDTVGAKAKPFSITVDCSKANPNPGSTAKMTFG
                     SVFFGNSKGTLNN"
BASE COUNT          170 a          110 c          122 g          188 t
ORIGIN      
        1 atcgccatac cctaaccaat tgcacttgtg aatttatttt tgcttaattt tgaattaaga
       61 aaatttaatt tgttcaaaag cccttaaagt gcacaatagg cgtcctaatg aacaatggtt
      121 gtaaattttg gtaacaaata tcattgctca ttaatatcta gcatctgctt ataacatttg
      181 tgtcatgaat agtcattctt caaaccagta gtctgactaa tggaatttta ttcaaggatt
      241 tttatgtcta aaaaattagg ttttgccctg tctggtctta tgctggcaat ggttgcaggt
      301 actgcttctg ctgatatgga tggtggtcag ttaaatatca gtggtctggt tgttgataac
      361 acctgtgaaa cccgcgttga cggcggtaat aaagatggtc tgatcctgct gcaaactgca
      421 actgttggtg aaatcgatgc tggcgtgctg aatgacaccg ttggcgctaa agccaaacct
      481 ttcagcatca ccgttgactg cagcaaagca aatccgaatc caggtagtac agctaaaatg
      541 accttcggtt ctgttttctt tggtaatagc aaaggaacgc tgaacaacga
//
LOCUS       DAJVSY010000381          574 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.388, whole genome shotgun sequence.
ACCESSION   DAJVSY010000381 DAJVSY010000000
VERSION     DAJVSY010000381.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 574)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.388"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>574
                     /locus_tag="OQQ19_004359"
     CDS             <1..>574
                     /locus_tag="OQQ19_004359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001215568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MolR family transcriptional regulator"
                     /protein_id="HCS1805711.1"
                     /translation="RHINHPFALTLLIRVAGQTKRCHDRMTKAIAAFPHAAMAALTEL
                     LGQKEENSWRIMLMTMLISQPALAEQVLPWLSTPAVAVLKSYQQQLTQPSNHACADLL
                     PAVLVSPPWLSKKKKSVMPVLDLTPLPLESCCTLTETAEKEIHTRHRWHAHQIDIGQK
                     EDIQNYLARLGFNRWNNGQYMKASDAVVEL"
BASE COUNT          165 a          149 c          130 g          130 t
ORIGIN      
        1 tgcgtcatat caatcatccg ttcgcattga cactgcttat acgtgtagcc gggcaaacta
       61 aacgctgtca cgatcggatg acgaaagcca ttgctgcgtt cccacatgca gcaatggcgg
      121 cactgacgga acttcttggg caaaaagaag agaacagttg gcgcattatg ctaatgacaa
      181 tgcttatctc acaaccagca ctggcagaac aggtccttcc ctggctctcg acacccgcag
      241 ttgccgtact gaaatcatac cagcaacaac tgacacagcc ctcaaaccat gcctgcgccg
      301 atctactgcc tgccgtatta gtctcaccgc cctggctttc gaaaaagaaa aaatctgtaa
      361 tgccggtatt ggatttaacg ccattaccgt tggagtcatg ctgtacattg actgagacgg
      421 cagaaaaaga gattcataca aggcatcgct ggcacgcaca tcaaatagac atcggccaaa
      481 aagaggatat tcagaactac ctggcacgtc tgggtttcaa tcgctggaat aatggccagt
      541 atatgaaagc gtctgatgct gttgtagaac tctg
//
LOCUS       DAJVSY010000382          558 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.389, whole genome shotgun sequence.
ACCESSION   DAJVSY010000382 DAJVSY010000000
VERSION     DAJVSY010000382.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 558)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.389"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..286
                     /locus_tag="OQQ19_004360"
     CDS             <1..286
                     /locus_tag="OQQ19_004360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805712.1"
                     /translation="DWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRL
                     KASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS"
     gene            complement(287..466)
                     /locus_tag="OQQ19_004361"
     CDS             complement(287..466)
                     /locus_tag="OQQ19_004361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001039895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805713.1"
                     /translation="MNKPQLAESQKTALLTEAESVIRPRGRAVRLNRETDESGEARGR
                     ASVFPESVRSVVYAM"
BASE COUNT          133 a          161 c          153 g          111 t
ORIGIN      
        1 ggactggttc tccctctggg gaccatggca tgctgtactg aagcgtacgg aagctgaccg
       61 ctgggcgctg gcagaagagc agaaatatga gatgctggag aatgagtacc ctcagagggt
      121 ggctgaccgg ctgaaagcat caggtctgag cggtgatgcg gatgcggaga gggaagccgg
      181 tgcacaggtg atgcgtgaga ctgaacagca gatttaccgt cagctgactg acgaggtact
      241 ggccctgcga ttgcctgaaa acggctcaca actgcaccat tcataatcac atcgcataaa
      301 ccacagaccg gactgactcc ggaaaaacag aggcccgccc ccgggcctcc ccggattcat
      361 ccgtttccct gttcagcctg acagcacgcc cccgcggccg gatgacagac tccgcttcgg
      421 taagcaaagc ggtcttctgt gattccgcca gttgcggctt attcattact caacgtcaaa
      481 cgcccgaatt gaagccaaat catccagacc gctcagctcc tctttcattt cacgctgacg
      541 gcgataaatc tcatcgtt
//
LOCUS       DAJVSY010000383          557 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.390, whole genome shotgun sequence.
ACCESSION   DAJVSY010000383 DAJVSY010000000
VERSION     DAJVSY010000383.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.390"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            1..>557
                     /gene="fimZ"
                     /locus_tag="OQQ19_004362"
     CDS             1..>557
                     /gene="fimZ"
                     /locus_tag="OQQ19_004362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria biosynthesis transcriptional regulator
                     FimZ"
                     /protein_id="HCS1805714.1"
                     /translation="MIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRP
                     VDLIIMDIDLPGTDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKC
                     NDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTVTVLSNREVTILRYLVSGL
                     SNKEIADKLLLSNKTVSAHKSNIYG"
BASE COUNT          180 a          102 c          105 g          170 t
ORIGIN      
        1 gtgatcatta tggatactca tcctatcatc agaatgtcta ttgaagttct gttgcaaaaa
       61 aacagtgaat tgcagattgt cctgaaaacg gatgattacc gcataaccat cgattatctc
      121 cgaacccgtc ctgttgattt aatcattatg gatatagact tgcccggaac agacggtttt
      181 accttcctga aaaggatcaa acaaatccag agcacagtga aagtgttatt tttatcatcg
      241 aaatcagaat gcttttatgc tggcagagcg atacaagctg gtgctaacgg ttttgtcagt
      301 aaatgcaatg atcagaatga tatttttcat gccgttcaga tgatcctctc cggatacacg
      361 ttttttccca gcgaaacgct taactatata aaaagcaata aatgtagtac gaatagttca
      421 acggtcactg tgctatctaa tcgtgaagtg accatattac gttatctggt tagcggatta
      481 tctaataaag aaattgccga taagttattg cttagcaata aaacagttag tgcgcataaa
      541 tctaatattt atggcaa
//
LOCUS       DAJVSY010000384          548 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.391, whole genome shotgun sequence.
ACCESSION   DAJVSY010000384 DAJVSY010000000
VERSION     DAJVSY010000384.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 548)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.391"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>548
                     /locus_tag="OQQ19_004363"
     CDS             <1..>548
                     /locus_tag="OQQ19_004363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001297906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1805715.1"
                     /translation="EAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDD
                     DLAAQTTQASNRIRGLLTQIHPALERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKL
                     AAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVA
                     LEVEQRVLAHPLYPVLTSMPGV"
BASE COUNT          118 a          181 c          142 g          107 t
ORIGIN      
        1 tgaagctaaa actgatgctc gtgacgctgc catcattgcc gaagctgccc gtaccctgcc
       61 tcacgcgcta cgcacgctga aactggctga cgagcaaatc gccgaactct ccatgctctg
      121 cggcttcgat gatgatcttg ccgcacagac aacgcaggcc agcaaccgta tccgcggcct
      181 tctgacccag atacatccgg cactggagcg cgttctcggt ccgagacttg agcacccggc
      241 ggtactcgat cttctccagc gatatccctc accagaaaaa ctcgcttcgc tgggtgagaa
      301 gaagctggca gcccagctct gcaaacttgc gcctcgtctg ggtaaacgcc ttgcagcaga
      361 catagctcag gcactggccg aacaaaccgt cgtcgttccc ggcacgaatg ccgctgccgt
      421 agtactgcca cgtctggcac tccagctcat cacgctgcgt aagcaaagag acgaggtggc
      481 gcttgaggta gaacagcgag ttcttgctca ccctctttac ccggtcctga ccagtatgcc
      541 cggagtcg
//
LOCUS       DAJVSY010000385          544 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.392, whole genome shotgun sequence.
ACCESSION   DAJVSY010000385 DAJVSY010000000
VERSION     DAJVSY010000385.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 544)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.392"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(50..>544)
                     /locus_tag="OQQ19_004364"
     CDS             complement(50..>544)
                     /locus_tag="OQQ19_004364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000824385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HCS1805716.1"
                     /translation="SVDYNIEGFGFVGAYSKSDRTNEQAGDGYGDNAEVWSLAAKYDA
                     NNIYAAMMYGETRNMTVLANDHFANKTQNFEAVVQYQFDFGLRPSLGYVYSKGKDLYA
                     RDGHKGVDADRVNYIEVGTWYYFNKNMNVYTAYKFNLLDKDDAAITDAATDDQFAVGI
                     IYQF"
BASE COUNT          150 a          119 c          111 g          164 t
ORIGIN      
        1 tcaggctagt gttatgtttt acagtaacac gccgcggcgc gttggctgat tagaactggt
       61 agatgatacc aactgcaaac tggtcatcag ttgcggcatc ggtaatcgct gcatcgtctt
      121 tatccagcag gttaaatttg tatgctgtgt agacgttcat gttcttattg aagtagtacc
      181 aggtaccaac ttcgatataa tttacgcggt cagcatcaac acctttatgt ccatcacgag
      241 cataaagatc tttgcctttg gaatatacgt agcctaaaga cggacgtaaa ccgaagtcga
      301 actgatactg tacaacagct tcaaagtttt gggttttatt tgcaaaatga tcattagcca
      361 aaacggtcat gttgcgggtt tcaccgtaca tcattgctgc atagatatta tttgcatcat
      421 acttggctgc taatgaccac acttcagcgt tatcaccgta gccgtcacca gcttgttcat
      481 tagtacgatc agatttgcta tatgcaccta caaaaccaaa accttcgatg ttgtagtcta
      541 caga
//
LOCUS       DAJVSY010000386          536 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.393, whole genome shotgun sequence.
ACCESSION   DAJVSY010000386 DAJVSY010000000
VERSION     DAJVSY010000386.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 536)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 536)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.393"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..152)
                     /locus_tag="OQQ19_004365"
     CDS             complement(<1..152)
                     /locus_tag="OQQ19_004365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805717.1"
                     /translation="MILRHRTGPAFQTIKDSLAVGLNALTLTDITKNATYGVEIESLV
                     LEINAPA"
     gene            complement(149..337)
                     /locus_tag="OQQ19_004366"
     CDS             complement(149..337)
                     /locus_tag="OQQ19_004366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000874242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1737 domain-containing protein"
                     /protein_id="HCS1805718.1"
                     /translation="MAFKHYDVVRAAPPSDLAEKLTHKLKEGWQPFGSPVAITPYTLM
                     QAIAAEGDVVVSGATEPE"
BASE COUNT          162 a          139 c           94 g          141 t
ORIGIN      
        1 gccggtgcat ttatctccag caccagactt tctatctcaa cgccatacgt tgcatttttg
       61 gtaatatccg tcagcgtcag tgcatttagt cccactgcca gactgtcttt tatggtctgg
      121 aatgccgggc cagtacgatg acgtagtatc actccggctc agttgcacca ctgaccacca
      181 catcaccttc tgctgcaatc gcctgcatca gggtataagg ggttatggcc accggactac
      241 caaacggctg ccagccctct ttcagtttat gtgtcagctt ttccgcaaga tctgacggcg
      301 gcgccgccct gacaacatca tagtgtttaa atgccatggt tctttccacc atctgaaaaa
      361 taattcttta aaatacctga catgtaatac agaaaaaaca caaaaccata ccttaaataa
      421 aaacctgatt atcaagcaga tatgcatgga taaactacaa gacgagatat aaaccaccct
      481 gcatttaaat aaacaataaa caacatcaga aaaataattc tgctctatgg tttaca
//
LOCUS       DAJVSY010000387          532 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.395, whole genome shotgun sequence.
ACCESSION   DAJVSY010000387 DAJVSY010000000
VERSION     DAJVSY010000387.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 532)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.395"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            115..384
                     /locus_tag="OQQ19_004367"
                     /pseudo
     CDS             115..384
                     /locus_tag="OQQ19_004367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439260.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
BASE COUNT          165 a          104 c          135 g          128 t
ORIGIN      
        1 gctgcatgac aaggtcatcg ggcattatct gaacataaaa cactatcagt aagttggagt
       61 cattacctta tttgtgaatt aaatcaatta tggcgatgaa ttacaagggg ttaaatgctg
      121 ccgcagcata gcgatattga aatagcctgg tatgcttcga tacagcagga gctgaatgtc
      181 tggaagaccg tcaccacaca gttctacatc caggaattca gtgagcatat tgcgccactt
      241 caggatgctg tagatctgga gatcgcaacg gaggaagaaa actcgttgct ggaagcctag
      301 aagaagtatc gggtgttgct gaaccgtgtt gatacatcaa ctgcacctga tattgagtgg
      361 ccggaagaac cagacacaat gtaagcgaaa aagaaaaacc gcagacgcga cgtatgcagg
      421 acgtgctgcg gttggctggt gaactttcga tagtgcgagt attgaatgat ttccagccgt
      481 taccgatttt atataactgc agtggaatta ttcaacacac aggcaaaacg ga
//
LOCUS       DAJVSY010000388          523 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.396, whole genome shotgun sequence.
ACCESSION   DAJVSY010000388 DAJVSY010000000
VERSION     DAJVSY010000388.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 523)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.396"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..102
                     /locus_tag="OQQ19_004368"
     CDS             <1..102
                     /locus_tag="OQQ19_004368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000902876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1805719.1"
                     /translation="IYAKSLQAMDFSAITDKSSYNAIEWPVSPEGSS"
     gene            126..>523
                     /locus_tag="OQQ19_004369"
     CDS             126..>523
                     /locus_tag="OQQ19_004369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707257.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS1805720.1"
                     /translation="MSVVISGALTDGAGIPMSGCQIILKSRVNTSEVVMRTRADVVTG
                     NNGEYSFEAQVGKYCVYLKRDWRDEYCVGDIAVYDDSKPGTLNDFLTAPDEGDLKPDV
                     VKRFEEMVAQAQQSAGAAAGNAQQTAQDVAA"
BASE COUNT          130 a          127 c          153 g          113 t
ORIGIN      
        1 atttacgcga aatcgctgca ggcgatggat ttcagcgcca tcactgataa atcctcatac
       61 aacgccattg aatggcccgt ctctccggaa ggttcttcct gatttaattt atcgcgagaa
      121 aaactatgtc tgtagtgata tcaggtgcgc tgactgatgg cgcaggcatc cccatgtccg
      181 gatgccagat tattctgaaa tcccgtgtaa acacctcaga agtggtgatg cgtaccaggg
      241 ctgatgtagt gaccggaaat aacggtgaat attcgtttga ggcacaggtc ggaaaatatt
      301 gcgtgtatct gaaacgggac tggcgcgacg agtactgtgt tggcgacatt gctgtatacg
      361 acgactcaaa gcccggcacg ctgaatgact ttctgactgc ccccgatgaa ggcgacctga
      421 agccggatgt cgtcaaacgc tttgaggaaa tggtggcgca ggcgcagcag agcgccgggg
      481 ccgcagccgg aaacgcacag cagacggcgc aggatgtggc ggc
//
LOCUS       DAJVSY010000389          522 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.397, whole genome shotgun sequence.
ACCESSION   DAJVSY010000389 DAJVSY010000000
VERSION     DAJVSY010000389.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.397"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            347..>522
                     /locus_tag="OQQ19_004370"
     CDS             347..>522
                     /locus_tag="OQQ19_004370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805721.1"
                     /translation="MKIPEAVNHINVQNNIDLVDGKTNPNKATKALQKNILRVTNSSS
                     SGISEKHLDHCANTV"
BASE COUNT          199 a           89 c           98 g          136 t
ORIGIN      
        1 aggaaacccg gggcggttca aggactctat catcgccaat catcagacat tgaaatagac
       61 gacactgaga tgacgcttac aattcttttg gtttctgtaa taagtaatct gacatccccc
      121 gtgcccagaa gaggagaggg atatcaagcc caagggttaa taattgatac tacggttaaa
      181 attgccttca gtaaaggaaa cgtgattaaa ttcaggggat ttcagagtga aaaccataca
      241 acatattaaa atctgttcat ttagctataa tacatacaag aaagtgtcca gttagataat
      301 gttatctaaa taaccacaga taaaaacgca cataattggg ggggggatga aaatacctga
      361 agcagtaaat catattaatg ttcagaataa tattgatctt gttgatggaa aaacgaatcc
      421 gaataaagca acaaaagcat tacaaaaaaa tatattacgc gtaacaaact catcttcttc
      481 tggcataagt gaaaaacatt tagatcactg tgctaatact gt
//
LOCUS       DAJVSY010000390          516 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.398, whole genome shotgun sequence.
ACCESSION   DAJVSY010000390 DAJVSY010000000
VERSION     DAJVSY010000390.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.398"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            236..516
                     /locus_tag="OQQ19_004371"
                     /pseudo
     CDS             236..516
                     /locus_tag="OQQ19_004371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001179707.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          133 a          136 c          126 g          121 t
ORIGIN      
        1 atccccgcca gcccggctaa gatggaggca cggcacagcc cgcacacgac gctgaggcta
       61 cagagctgaa aacccacaag gccatgcccc gcatggccgg gtaaagcgga gccggcggcg
      121 acttcctttg tgctctgtcc gggaccggca ggaaaaaggc ggggataatg agatggtcac
      181 ccccacccta acagcagtac gctgttaagg tgaatccctt aacggagaga ccatcataca
      241 gaacatcaca cttattggta tcgatctcgg aaagcattcc ttccacattc attgtcaaga
      301 caagtctggt aaggctcttc tgcgtaaaaa atttacccag tactaaactg atgcagtttc
      361 tggcaacatg tccgccctca gttgttgtaa tggaagcctg tgcgggtgca cactttttgg
      421 ctcgccgtat ctctgaattt tggacatgaa actaagctga tttctccaca gttcgttcgc
      481 ccgtttgtca aaagtaataa gaatgatttt gttgat
//
LOCUS       DAJVSY010000391          514 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.399, whole genome shotgun sequence.
ACCESSION   DAJVSY010000391 DAJVSY010000000
VERSION     DAJVSY010000391.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.399"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..279
                     /locus_tag="OQQ19_004372"
     CDS             <1..279
                     /locus_tag="OQQ19_004372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
                     /protein_id="HCS1805722.1"
                     /translation="SLNVYCRNGQVEIDNNIGENALRSVAVGRKNYLFFGSDNGGESA
                     AIIYSLLVTCKLNGVEPEDWLREVIVKLNDWPSNRVHELLPWNFSAVK"
BASE COUNT          125 a          115 c          139 g          135 t
ORIGIN      
        1 agcctgaacg tgtactgtcg taatggccag gtggaaatcg acaacaacat cggtgaaaac
       61 gcgctgcgat cggtggcggt tggaagaaaa aattatctct tcttcggttc tgacaacggt
      121 ggagaaagcg cggcgattat ctacagtctg ctggtcacct gcaaactgaa cggagtggag
      181 ccggaggact ggttgcgcga agtgatcgtg aagctcaatg actggccgtc gaaccgagtg
      241 catgaactgc tgccctggaa cttctcagct gtaaaataat ccttccgcta cgtacttctc
      301 tgggcgctta ccactcaacg gcatcgtcaa aattatcaaa gcgcagaaca tagatttatc
      361 atgtgtttta tggatggctt tctccatcag gcatcgttcg tcacgggaaa ttggtgctat
      421 gatcggcatt gatcagtccg gttggtgatt tgttttgatt tggcgattga tcagatcgca
      481 caatccgggc tgagttccct ctaagtgatc tagg
//
LOCUS       DAJVSY010000392          486 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.400, whole genome shotgun sequence.
ACCESSION   DAJVSY010000392 DAJVSY010000000
VERSION     DAJVSY010000392.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 486)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.400"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(41..277)
                     /locus_tag="OQQ19_004373"
     CDS             complement(41..277)
                     /locus_tag="OQQ19_004373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000514280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4754 family protein"
                     /protein_id="HCS1805723.1"
                     /translation="MGKEYKTLINKALERFYFRLSASGAHAERAARDSLTRAIRSLYD
                     VAFYADDLDALNELSELICAAVDLPLYFQTSVIT"
     gene            complement(289..>486)
                     /locus_tag="OQQ19_004374"
     CDS             complement(289..>486)
                     /locus_tag="OQQ19_004374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805724.1"
                     /translation="TPAGKNGADEATYVYLNGTRLLVELPYQTVQEIISEAEKARQVN
                     GDEPYIEIICMDSEAEIQKAD"
BASE COUNT          122 a          115 c          114 g          135 t
ORIGIN      
        1 ctcgccacgg gaatatctgc ggcagcgggc ttgtaatggg ttaagtgata acagatgtct
       61 ggaaatatag gggcaaatcc actgcggcac agatcagctc ggaaagttcg ttaagtgcat
      121 ccagatcatc agcgtaaaaa gccacgtcat acagacttcg gattgctctg gtcaatgagt
      181 cacgggccgc acgttcagca tgagcgcctg atgcacttaa gcgaaaataa aaacgctcaa
      241 gtgctttgtt aatgagagtt ttatattctt tgcccatcac aacgcccttt aatctgcttt
      301 ctgtatttca gcttctgaat ccatacaaat aatttcgata tagggttcat cgccattaac
      361 ctggcgtgcc ttttcagctt cgctaatgat ttcttgtacg gtctggtacg gaagttccac
      421 aagcagtcgc gtgccgttca gataaacgta agtggcttcg tcggctccgt ttttacccgc
      481 cggagt
//
LOCUS       DAJVSY010000393          478 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.401, whole genome shotgun sequence.
ACCESSION   DAJVSY010000393 DAJVSY010000000
VERSION     DAJVSY010000393.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.401"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..254
                     /gene="tnpA"
                     /locus_tag="OQQ19_004375"
     CDS             <1..254
                     /gene="tnpA"
                     /locus_tag="OQQ19_004375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000604943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HCS1805725.1"
                     /translation="DATEKLRTYFSNVCADFEAELVEMDGEPDHVHLLINYPPKLAIS
                     SLVNSLKGVLWSPGYFASSCGGAPISVIRQYIEQQQTPG"
BASE COUNT          140 a          120 c           97 g          121 t
ORIGIN      
        1 atgacgcgac agaaaaacta cgcacttact tttcaaatgt atgtgctgat tttgaagctg
       61 aactggttga aatggatggc gaaccagatc acgtccattt gttaattaac tatcctccca
      121 aactggcaat atccagtctg gtaaacagcc tcaaaggcgt tttgtggagt cctggctatt
      181 ttgccagtag ctgcggaggt gcgccaatat ccgtcatccg ccaatacatt gaacaacagc
      241 aaacacctgg ttaggtggaa aaccacgcct tatatccctg ccctgaagga cggggtttta
      301 cggcgcaccg gataagcctg gagattatct acaccagcat ggacatcatt gtactatgcc
      361 ccgtacatgc cccatcacat cctcaacatc aaagtattag agccttgcaa accattatgc
      421 gtctcagttt gtctcatcta tcttacgcaa aaaaaaatag aactaatatc aagcggcg
//
LOCUS       DAJVSY010000394          477 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.402, whole genome shotgun sequence.
ACCESSION   DAJVSY010000394 DAJVSY010000000
VERSION     DAJVSY010000394.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.402"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            35..477
                     /locus_tag="OQQ19_004376"
                     /pseudo
     CDS             35..477
                     /locus_tag="OQQ19_004376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612230.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
BASE COUNT          106 a          125 c          129 g          117 t
ORIGIN      
        1 atttagtgta tgatggtgat tttaaggtgc ttgcgtggct tccatttcca tcagatgtcc
       61 ttcctgctcc gctactgaag gcgtggtgcg taacggcaaa agcactgccg gacatcagcg
      121 ctatctctgc tctcattgcc gtaaaacatg gcaactacag ttcacttaca ccgcctctca
      181 gcccggtacg caccagaaaa tcattgatat ggccatgaat ggcgtcggat gtcgcgccag
      241 tgcacgcatt atgggcgttg gcctcaacac ggttttacgt cacttaaaaa actcaggccg
      301 cagtcggtaa cctcgcgcat acaaccgggc agtgatgtga ttgtctgcgc tgaaatggac
      361 gaacagtggg gctacgtcgg tgctaaatca cgtcagcgct ggctgtttta cgcgtatgac
      421 aggatacgga ggacggttgt ggcgcacgtc ttcggtgaac gcactctggc cacactg
//
LOCUS       DAJVSY010000395          476 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.403, whole genome shotgun sequence.
ACCESSION   DAJVSY010000395 DAJVSY010000000
VERSION     DAJVSY010000395.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.403"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>476
                     /locus_tag="OQQ19_004377"
     CDS             <1..>476
                     /locus_tag="OQQ19_004377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000198547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase zinc-binding domain-containing
                     protein"
                     /protein_id="HCS1805726.1"
                     /translation="LACGTRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATD
                     LWIATQLNRLPDCDWVHLVFTLPDTLWPVFESNRWLLNDVCRLAVENLLYAARKRGQE
                     PGIFCAIHTYGRRLNWHPHVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQL"
BASE COUNT          102 a          129 c          146 g           99 t
ORIGIN      
        1 tgctggcctg cggcacgcgg atactgggag tgaaggaata catctgcgat aaacctgagt
       61 gcccccacgt cagatacgtc actaactcat gcggcagccg tgcctgcccg tcctgcggaa
      121 aaaaggccac agacctgtgg atagcgacac agctgaatcg tcttcctgac tgcgactggg
      181 tacacctggt cttcaccctg ccggacacgc tgtggccggt gttcgaaagc aaccggtggc
      241 tgctgaatga cgtgtgccgt ctggcggtgg agaatctgct gtatgccgcc cggaaacggg
      301 ggcaggaacc cggtatcttc tgcgccatcc acacgtatgg ccgtcgtctc aactggcatc
      361 cgcatgtaca tgtgtctgta acctgtggag gtctgaataa gcatggtcag tggaaaaagc
      421 tgagcttcct gaaagacgcg atgcgttcac ggtggatgtg gaatatgcgg cagctg
//
LOCUS       DAJVSY010000396          467 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.404, whole genome shotgun sequence.
ACCESSION   DAJVSY010000396 DAJVSY010000000
VERSION     DAJVSY010000396.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 467)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 467)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.404"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            108..467
                     /locus_tag="OQQ19_004378"
                     /pseudo
     CDS             108..467
                     /locus_tag="OQQ19_004378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS1 family transposase"
BASE COUNT          121 a          115 c          110 g          121 t
ORIGIN      
        1 ttttaacgta aggtgagagg atttttaagt gtatccatag attaaaaatg acaatgcctc
       61 caattagttg aattaggggt tataataccc gcttttaagg ttctttcatg gtcacagtta
      121 actttcattg cccccgttgc cagtccgttc aggtttaccg tcacgggcag aacccaaaag
      181 gacatgatcg attccgttgc cgtgactgtc accgggtgtt tcagctcact tactgttacg
      241 aggcccgtaa accgggagtt aaaaaccaaa tcactgaaat ggcttcaacg gtgccggagt
      301 tcgcgatact gcccgtacgc tgaaaatcgg catcaatacc gtcatacgga cattaaaaag
      361 ctcccgcccc ggcggataac atctgcgcca gtcgctcacg ctgatgttgc ccttatctgt
      421 gaacttgatg ggcagtggag cttcgttggc agcaaggcgc aacaaca
//
LOCUS       DAJVSY010000397          439 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.405, whole genome shotgun sequence.
ACCESSION   DAJVSY010000397 DAJVSY010000000
VERSION     DAJVSY010000397.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.405"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>439
                     /locus_tag="OQQ19_004379"
     CDS             <1..>439
                     /locus_tag="OQQ19_004379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1805727.1"
                     /translation="PVESRRQAKGTRFLWQHSDKWMTESRQEKLIWLRAQMKLTSLCW
                     ALKELAKDIWSRPWSEERRNDWQRWLSLAANSDVPMMKNVAKTIGKRLYGILNAMRHG
                     VSNGNAEALNSKIRLLRIKAKGYRNRERFKLGVMFHYGKLNMAF"
BASE COUNT          128 a           95 c          139 g           77 t
ORIGIN      
        1 cctgttgaaa gtcgtcgtca ggcaaaggga actcgcttcc tgtggcagca cagcgataaa
       61 tggatgaccg aatccaggca ggaaaagctg atatggctgc gtgcgcagat gaagctgacg
      121 agcctgtgct gggcgctgaa agaactggca aaggatatct ggagcagacc atggagcgag
      181 gaaagacgca acgactggca gagatggctg tcgctggcgg ccaacagtga cgtccccatg
      241 atgaagaatg tggctaaaac gatagggaaa aggttgtacg gtatcctgaa cgccatgcgc
      301 catggcgtat caaacggaaa tgcggaagca ctgaacagca agatcaggct gctgagaata
      361 aaagccaagg gctaccgcaa ccgggagcgc tttaagctgg gagtgatgtt ccactatggg
      421 aaactgaata tggcgttct
//
LOCUS       DAJVSY010000398          434 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.406, whole genome shotgun sequence.
ACCESSION   DAJVSY010000398 DAJVSY010000000
VERSION     DAJVSY010000398.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.406"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>434
                     /locus_tag="OQQ19_004380"
     CDS             <1..>434
                     /locus_tag="OQQ19_004380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HCS1805728.1"
                     /translation="SGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTE
                     LAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQ
                     VWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELT"
BASE COUNT          124 a          108 c          121 g           81 t
ORIGIN      
        1 agcggttatt acaactgggt acagcatgaa ccctcagaca gaaaacaaag tgatgagcgg
       61 ctaaaactgg agattaaggt ggcacatatc cgcactcgcg aaacatatgg aacccggcgg
      121 ctccagacgg agctggcaga gaatggcatc atcgttggtc gtgaccgact ggcacgtctt
      181 cgtaaggagc taaggctacg ctgtaagcag aaacgcaagt tcagagcgac tacgaacccg
      241 aaccacaatc tgccagttgc gccaaatctg ctgaaccaga cgttcgctcc tacagcacca
      301 aatcaggtct gggtggcgga cctgacgtat gttgccacac aggagggatg gttgtacctc
      361 gctggcatca aagatgttta tacgtgcgaa attgtcggct acgccatggg agagcgcatg
      421 acaaaagagc tgac
//
LOCUS       DAJVSY010000399          431 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.407, whole genome shotgun sequence.
ACCESSION   DAJVSY010000399 DAJVSY010000000
VERSION     DAJVSY010000399.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.407"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..>431)
                     /locus_tag="OQQ19_004381"
     CDS             complement(<1..>431)
                     /locus_tag="OQQ19_004381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001063816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HCS1805729.1"
                     /translation="HYVGRADWGPAHRRWLSKYSFESPWRQLAFDEHRRTIEDRQAQC
                     ERLESALKEAVTEWRLYPVVEALQAMRGIQFITAVGLISELGDLTRFEHPRQLMSWFG
                     ITPSEYSSGGSRHQGSITKAGNSYARKLLVEAAWSYRHPAR"
BASE COUNT           93 a          121 c          105 g          112 t
ORIGIN      
        1 tgcgtgccgg atgacggtaa ctccacgctg cctcgaccaa tagctttctg gcatagctgt
       61 ttccggcttt ggtaatgctg ccctgatgtc tgcttccacc cgatgaatat tctgatggcg
      121 tgataccaaa ccatgacatc agttgtcgtg gatgttcaaa acgggtcaga tcacccagtt
      181 cagaaattaa tccaaccgca gtaataaact gaatccctcg catggcttgc agcgcctcta
      241 ctaccggata cagcctccat tcggtaacgg cctccttcag ggcggattcc agccgttcac
      301 attgtgcctg ccggtcttct attgtacgac ggtgttcgtc aaaagctaat tgtcgccagg
      361 gactttcgaa tgagtatttg ctgagccagc gtcggtgtgc agggccccaa tctgctcgcc
      421 cgacataatg g
//
LOCUS       DAJVSY010000400          430 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.408, whole genome shotgun sequence.
ACCESSION   DAJVSY010000400 DAJVSY010000000
VERSION     DAJVSY010000400.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 430)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 430)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.408"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..332)
                     /locus_tag="OQQ19_004382"
     CDS             complement(<1..332)
                     /locus_tag="OQQ19_004382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707670.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HCS1805730.1"
                     /translation="MTLYQIKPLFQSLLRPTMFWLYKHHVTANHITLTALALSLFTGL
                     LLVLVAQPILFLLLPIVLFIRMALNALDGMLARECNQQTRLGAILNETGDVISDIALY
                     LPFLFLPE"
BASE COUNT          138 a           95 c          100 g           97 t
ORIGIN      
        1 ctttccggta aaaataaaaa cggtaaatag agcgcaatat cggaaataac atcgccagtt
       61 tcattcaaaa tcgcccccag acgtgtttgc tgattgcact cacgcgccaa catgccatcc
      121 agcgcattga gcgccatacg gataaaaagc acgatgggca atagcaaaaa gaggatgggt
      181 tgtgccacca acaccaacag caatccggta aaaagagaaa gcgccagtgc cgtaagagtg
      241 atgtgattcg ctgtaacgtg gtgcttataa agccaaaaca tcgtcggcct taacagcgac
      301 tgaaagagcg gttttatctg gtagagcgtc atttatcatt ccgtgatatt cagtttgctc
      361 tatggtgcat caattgtgat ggcggagata tcacaacgcg gagcatcaac gtaaattcgg
      421 aatatatcaa
//
LOCUS       DAJVSY010000401          414 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.409, whole genome shotgun sequence.
ACCESSION   DAJVSY010000401 DAJVSY010000000
VERSION     DAJVSY010000401.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.409"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..258
                     /locus_tag="OQQ19_004383"
     CDS             <1..258
                     /locus_tag="OQQ19_004383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805731.1"
                     /translation="LNYGNFDARYKHRTEGVQDVRYGYEMYYNPGSNTVSWTFRSPSG
                     HGLSGISISDTGRNSADNVNGVYYRPLQKLINGIWYNVASI"
     gene            261..>414
                     /locus_tag="OQQ19_004384"
     CDS             261..>414
                     /locus_tag="OQQ19_004384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000902876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1805732.1"
                     /translation="MLHLKNITAGNPKTAEQYQLTKQYDVTWLFSEDGKNWYEEQKNF
                     ASDTIKM"
BASE COUNT          132 a           84 c           99 g           99 t
ORIGIN      
        1 ttaaattacg gaaacttcga tgcccgctat aaacatcgaa ctgagggggt acaggatgtg
       61 cggtatggtt atgaaatgta ttacaaccct ggcagcaaca ccgtttcatg gacgtttcgc
      121 tcaccttcgg gacacgggtt gtcagggata tcgatatcgg ataccggccg taactcagcg
      181 gataacgtca acggtgtgta ttaccgaccg ctgcaaaaac tgattaatgg catctggtat
      241 aacgtagcga gtatttaaca atgttgcatt taaaaaatat tacggcaggt aatccgaaaa
      301 ccgcggaaca atatcagctg acaaaacagt atgatgtcac ctggcttttt tcggaagacg
      361 gcaaaaactg gtatgaagaa cagaagaact ttgccagtga caccataaaa atgg
//
LOCUS       DAJVSY010000402          399 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.410, whole genome shotgun sequence.
ACCESSION   DAJVSY010000402 DAJVSY010000000
VERSION     DAJVSY010000402.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.410"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(106..270)
                     /locus_tag="OQQ19_004385"
                     /pseudo
     CDS             complement(106..270)
                     /locus_tag="OQQ19_004385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001135853.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
     gene            complement(257..>399)
                     /locus_tag="OQQ19_004386"
     CDS             complement(257..>399)
                     /locus_tag="OQQ19_004386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000902876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1805733.1"
                     /translation="ISDEDKEKLKACRIYAKSLQAMDFSTITDKATYNAINWPERPDA
                     AA"
BASE COUNT           89 a           98 c          101 g          111 t
ORIGIN      
        1 ctcgtctggg gaatatctcc ccggcagcct tcagggaaaa atatcatcag atgactgctc
       61 aaaaaaagaa caaatggtag tgtccgctat tgccagtaca cctcacacac ccggcagaac
      121 ggggaagtca tattccccgt tctgtgtggt gacatggctg aaaacacttt tcagaatccc
      181 tgcacggttg tgtatggagg ttagtgtaat ggttgcgccg tccagcggtt ctcccgtggg
      241 cgttttaatc acacctttaa gctgcggcat cgggacgctc cggccagttg atggcgttat
      301 atgtggcttt atctgtgatg gtgctgaaat ccatcgcctg cagcgatttc gcgtaaatac
      361 gacaggcttt cagcttttct ttatcttcgt cgctgatta
//
LOCUS       DAJVSY010000403          384 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.411, whole genome shotgun sequence.
ACCESSION   DAJVSY010000403 DAJVSY010000000
VERSION     DAJVSY010000403.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 384)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.411"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            186..341
                     /locus_tag="OQQ19_004387"
                     /pseudo
     CDS             186..341
                     /locus_tag="OQQ19_004387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343613.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS256 family transposase"
BASE COUNT          121 a           83 c           98 g           82 t
ORIGIN      
        1 cagagagcag aacgggatct atacttttgc gggtcaacat aagaggatga gtccttaata
       61 aaacaggtcc tcagagaata catattctgc ggagcgtgcg gcaacaacag gacgaacagg
      121 ggcggttttc aatttgcagc cgtcaggctg ccgtggttca ctccaacaac ggagacaggt
      181 aaattatgga cgaaaagaag cttaaagccc ttgcggctga actggctaaa ggcctcaaaa
      241 ccgaggccga cctcaatcag ttttcccgta tgcagacgaa attaactgtc gaaacggtgc
      301 ttaatgagga actaactgac catctcgggc atgaaaaaag ctacatccgg tagtaaacat
      361 tatcagtggg ttatgcgata tgat
//
LOCUS       DAJVSY010000404          373 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.412, whole genome shotgun sequence.
ACCESSION   DAJVSY010000404 DAJVSY010000000
VERSION     DAJVSY010000404.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..373
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.412"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(41..373)
                     /locus_tag="OQQ19_004388"
                     /pseudo
     CDS             complement(41..373)
                     /locus_tag="OQQ19_004388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414844.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          100 a           77 c           66 g          130 t
ORIGIN      
        1 tcaccatcat acactaaatc agtaagttgg cagcattacc aggtatttgt atctcatcga
       61 gaacttgcct gccattatgg tattctgacg cataccattt gataatagac gcctgcacgc
      121 gagatatttc cgcttcagca gttggtaaat ctctcttatc tcctgaccat tccagcttta
      181 tttctctgtt cttgacatct gggctggtgt gaaaaaatgt agtaattcgc tgtataacat
      241 cttcagtcat tgtggtctga caggcaaaat tattattgct atcacagcta acaagtatac
      301 ctggcgttgt ctggtttatt tttaggctgt aaatcacttt tatattgtct ttattgatat
      361 acagaaacaa cag
//
LOCUS       DAJVSY010000405          368 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.413, whole genome shotgun sequence.
ACCESSION   DAJVSY010000405 DAJVSY010000000
VERSION     DAJVSY010000405.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..368
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.413"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..358)
                     /locus_tag="OQQ19_004389"
     CDS             complement(<1..358)
                     /locus_tag="OQQ19_004389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCS1805734.1"
                     /translation="MSPTIYDIARVAGVSKSTVSRVLNKQTNISPEAREKVLRAIEEL
                     QYQPNKQARALTSSGFDAIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVILQT
                     SHNPAEDLQKCESKIKQ"
BASE COUNT           89 a           83 c           90 g          106 t
ORIGIN      
        1 tctgcttaat tttgctttca catttttgta agtcttctgc cggattgtgc gacgtctgca
       61 atatcacgtc gaaaccttcc tcttcagctt tggcggtgat ggcatgcaaa acttcagaga
      121 aaaacggatt acccgccgta gttttggtcg aacgggtaga aatcaccata atggcatcaa
      181 aacccgaaga ggtcagcgcg cgggcctgct tgtttggctg atactgtaat tcttcaatgg
      241 cccgtaacac tttttcgcgc gcttccgggg agatattagt ttgcttattc agcacgcgtg
      301 atacggtgga ttttgatacg cctgcaaccc tggcaatatc ataaatagta ggggacatag
      361 gtcaggaa
//
LOCUS       DAJVSY010000406          367 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.414, whole genome shotgun sequence.
ACCESSION   DAJVSY010000406 DAJVSY010000000
VERSION     DAJVSY010000406.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.414"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..102
                     /locus_tag="OQQ19_004390"
     CDS             <1..102
                     /locus_tag="OQQ19_004390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000902876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1805735.1"
                     /translation="IYAKSLQAMDFSVITDKTSYNAIEWPASPEISS"
     gene            126..>367
                     /locus_tag="OQQ19_004391"
     CDS             126..>367
                     /locus_tag="OQQ19_004391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707257.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS1805736.1"
                     /translation="MSVVISGALTDGAGIPMSGYHIILKSRVNTPEVVMHTVADVMTG
                     NDGEYCFHARTGKYGVYLKPGWHNEYNVGDIAVYEDS"
BASE COUNT           98 a           81 c           92 g           96 t
ORIGIN      
        1 atttacgcga aatcgctgca ggcgatggat ttcagtgtca tcactgataa aacctcatac
       61 aacgccattg aatggcccgc ctctccggaa atttcttcct gatttaattt atcgcgagaa
      121 aaactatgtc tgtagtgata tcaggtgcgc tgactgatgg cgcaggtatc cccatgtccg
      181 gataccatat tattctgaaa tcccgggtaa acaccccgga agtggtgatg cacactgttg
      241 ctgatgtgat gacaggaaac gatggtgaat actgtttcca tgcgcggact ggaaaatatg
      301 gtgtgtatct gaaaccgggc tggcacaacg agtacaacgt tggcgacatt gctgtatatg
      361 aggactc
//
LOCUS       DAJVSY010000407          367 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.415, whole genome shotgun sequence.
ACCESSION   DAJVSY010000407 DAJVSY010000000
VERSION     DAJVSY010000407.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.415"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            1..>367
                     /gene="leuE"
                     /locus_tag="OQQ19_004392"
     CDS             1..>367
                     /gene="leuE"
                     /locus_tag="OQQ19_004392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020454061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine efflux protein LeuE"
                     /protein_id="HCS1805737.1"
                     /translation="MVGAIFIVLVPGPNTLFVLKNSVSSGMKGGYLAACGVFIGDAVL
                     MFLAWAGVATLIKTTPILFNIVRYLGAFYLLYLESKILYATLKGKNNEAKSDEPQYGA
                     IFKRALILSLTNPKAILFYV"
BASE COUNT           87 a           72 c           92 g          116 t
ORIGIN      
        1 ctggttgggg ccatttttat tgtgttggtg cctgggccaa ataccctgtt tgtactcaaa
       61 aatagcgtca gtagcggtat gaaaggcggt tatcttgcgg cctgcggtgt atttattggc
      121 gatgcagtat tgatgtttct ggcatgggct ggagtggcga cattaattaa gaccaccccg
      181 atattattca acattgtacg ttatcttggt gcgttttatt tgctctatct ggagagtaaa
      241 attctctacg cgaccctgaa gggtaaaaat aacgaggcca aatccgatga gccccaatac
      301 ggggccattt ttaaacgcgc gttaattttg agcctgacta atccgaaagc cattttgttc
      361 tatgtgt
//
LOCUS       DAJVSY010000408          361 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.416, whole genome shotgun sequence.
ACCESSION   DAJVSY010000408 DAJVSY010000000
VERSION     DAJVSY010000408.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.416"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>361
                     /locus_tag="OQQ19_004393"
     CDS             <1..>361
                     /locus_tag="OQQ19_004393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HCS1805738.1"
                     /translation="KQTMQLSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHL
                     KGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPR
                     VVKERPWKYPTAPKKSQS"
BASE COUNT          108 a           71 c          111 g           71 t
ORIGIN      
        1 aaacagacga tgcaactgag caggctgacg ctgagaagta aaaagccgga gcttgtggag
       61 caagagctgt ggggtgtctt actggcttat aatctggtga gatatcagat gattaaaatg
      121 gcggaacatc tgaaaggtta ctggccgaat caactgagtt tctcagaatc atgcggaatg
      181 gtgatgagaa tgctgatgac attgcagggc gcttcaccgg gacgtatacc ggagctgatg
      241 cgcgatcttg caagtatggg acaacttgtg aaattaccga cgagaagggg aagggccttc
      301 ccgagagtgg taaaggagag gccctggaaa taccccacag ccccgaaaaa gagccagtca
      361 g
//
LOCUS       DAJVSY010000409          335 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.417, whole genome shotgun sequence.
ACCESSION   DAJVSY010000409 DAJVSY010000000
VERSION     DAJVSY010000409.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.417"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            88..>335
                     /locus_tag="OQQ19_004394"
     CDS             88..>335
                     /locus_tag="OQQ19_004394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805739.1"
                     /translation="MPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYY
                     FDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWL"
BASE COUNT          110 a           84 c           70 g           71 t
ORIGIN      
        1 ggctgcaatc aatgattatg gcggcagttc cgggacagaa actcgtccac tgcaataaca
       61 aatataaaaa acacaggtca tcagggaatg ccacaacgac accaccaggg acataaacgc
      121 acaccgaaac agttggcgct catcatcaaa cgctgtttgc cgatggtgct cactggcagc
      181 ggcatgcttt gcactaccgc taacgccgaa gagtattatt tcgaccccat tatgctggaa
      241 actacaaaaa gtggtatgca aacaactgat ctgtcacgtt tttcaaaaaa atacgcacaa
      301 ctaccaggaa cttatcaggt tgatatctgg ctgaa
//
LOCUS       DAJVSY010000410          334 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.418, whole genome shotgun sequence.
ACCESSION   DAJVSY010000410 DAJVSY010000000
VERSION     DAJVSY010000410.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 334)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 334)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.418"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            179..>334
                     /locus_tag="OQQ19_004395"
     CDS             179..>334
                     /locus_tag="OQQ19_004395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000820618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCS1805740.1"
                     /translation="MKRHNQRLKIISEYFGGVPVKNIGIREVYSFLEIRAAGSKFAIA
                     NQYRALLS"
BASE COUNT          126 a           49 c           74 g           85 t
ORIGIN      
        1 aatcggaaga gacaaaagaa ttgcagttaa tgaggctatt gcggcaaata tggaattatt
       61 atccacgcaa catataagct tactggatag aataaaaggt aatagcgtaa cattattctg
      121 cgagctgata ttaaatttca gaaatgaaat agagcgtaga caattaagca caaacaccat
      181 gaaaagacac aaccagaggt tgaaaatcat aagtgaatac tttggtggtg ttccggttaa
      241 aaatataggc ataagggagg tgtacagctt tcttgaaatc agagcagctg ggagtaaatt
      301 tgctattgct aaccagtaca gggcgctttt atca
//
LOCUS       DAJVSY010000411          332 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.419, whole genome shotgun sequence.
ACCESSION   DAJVSY010000411 DAJVSY010000000
VERSION     DAJVSY010000411.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 332)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 332)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.419"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            40..>332
                     /gene="iraM"
                     /locus_tag="OQQ19_004396"
     CDS             40..>332
                     /gene="iraM"
                     /locus_tag="OQQ19_004396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraM"
                     /protein_id="HCS1805741.1"
                     /translation="MKWIVIDTVIQPSCGISFSVIWSKIKLIIWYQSDAFLPPESIFT
                     LTHTGIMLNNKVLPVTIYNVVPFNKTFWNLIKNSQECPTNTDNVLNECFNNRCT"
BASE COUNT          124 a           66 c           51 g           91 t
ORIGIN      
        1 ttcagaacat caccagcaag gcataaacaa ggaaactaaa tgaagtggat tgtgattgat
       61 acagttatcc agccatcatg cggaatatct ttttcagtca tatggagtaa aataaaatta
      121 ataatctggt atcaatcgga tgctttctta cctcctgaaa gtatatttac actgactcac
      181 acaggcatca tgctcaataa caaagtgcta cctgtaacca tttacaacgt agtaccattc
      241 aataaaacat tctggaattt aatcaaaaac agccaggaat gccctacaaa tacagataac
      301 gtattgaatg aatgctttaa taaccgttgc ac
//
LOCUS       DAJVSY010000412          331 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.420, whole genome shotgun sequence.
ACCESSION   DAJVSY010000412 DAJVSY010000000
VERSION     DAJVSY010000412.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 331)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 331)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.420"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>331
                     /locus_tag="OQQ19_004397"
     CDS             <1..>331
                     /locus_tag="OQQ19_004397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707257.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1805742.1"
                     /translation="AEQAKNDIDAALTGTLKMANHLSEIAAAGEKAQQKSRDNLGLKS
                     AATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSV
                     AGPYDIII"
BASE COUNT           88 a           82 c           92 g           69 t
ORIGIN      
        1 gcagaacagg ccaaaaatga cattgatgct gcgctgaccg gcactctgaa aatggctaac
       61 catctgtcag aaatcgcagc agcaggcgaa aaggcacaac agaagtcccg ggataatctg
      121 gggctgaaaa gtgcggccac gatggaagca cagagcgaca tttacgaccg gacaaaaggc
      181 cgtctggcga tacccggcgc attcggcttt gggtgtgctt ttctgcctga agatgttatc
      241 cgttttgaca ctaagagtga tttcctggcc tgggtaagga atgcgctgcc aggtgaatat
      301 tccgttgctg gcccctacga catcatcata c
//
LOCUS       DAJVSY010000413          326 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.421, whole genome shotgun sequence.
ACCESSION   DAJVSY010000413 DAJVSY010000000
VERSION     DAJVSY010000413.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.421"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>326
                     /locus_tag="OQQ19_004398"
     CDS             <1..>326
                     /locus_tag="OQQ19_004398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HCS1805743.1"
                     /translation="EYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACML
                     GGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMD
                     PKRMIEA"
BASE COUNT           74 a           85 c           97 g           70 t
ORIGIN      
        1 gaatatccgc aatccgcagc catcgacctg cgttgcgtaa atatggttgc cgatctgtgg
       61 catgcgcctg cgccgaaaaa tggtcaggcc gttggcacca acaccattgg ttcttccgag
      121 gcctgtatgc tcggcgggat ggcgatgaaa tggcgttggc gcaagcgtat ggaagctgca
      181 ggcaaaccaa cggataaacc aaacctggtg tgcggtccgg tacaaatctg ctggcataaa
      241 ttcgcccgct actgggatgt ggagctgcgt gagatcccta tgcgccccgg tcagttgttt
      301 atggacccga aacgcatgat tgaagc
//
LOCUS       DAJVSY010000414          318 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.422, whole genome shotgun sequence.
ACCESSION   DAJVSY010000414 DAJVSY010000000
VERSION     DAJVSY010000414.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 318)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 318)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.422"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>318
                     /locus_tag="OQQ19_004399"
     CDS             <1..>318
                     /locus_tag="OQQ19_004399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HCS1805744.1"
                     /translation="SFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQL
                     LWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYS
                     ALRP"
BASE COUNT           82 a           76 c           99 g           61 t
ORIGIN      
        1 gtcgttctcg ccggacagca ggctcaccat gaaagcgctg gaaatggcat gggaaacccg
       61 tggtaagccc ggcggggtga tgttccacag cgatcagggc agtcattata cgagcaggca
      121 gttccggcag ttattgtggc gataccagat cagacagagt atgagccggc gcggaaactg
      181 ctgggataac agcccaatgg aacgcttctt caggagtctg aagaacgaat ggatgccggt
      241 ggtgggttac gtaagcttca gcgaggcagc tcacgccata acggactata tcgttggata
      301 ttacagcgca ctaagacc
//
LOCUS       DAJVSY010000415          315 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.423, whole genome shotgun sequence.
ACCESSION   DAJVSY010000415 DAJVSY010000000
VERSION     DAJVSY010000415.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 315)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 315)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.423"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>315
                     /locus_tag="OQQ19_004400"
     CDS             <1..>315
                     /locus_tag="OQQ19_004400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706235.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HCS1805745.1"
                     /translation="PALVGNDIGCGMALWQTDILARKYNADKFEKRLSDLDDVAEESW
                     LEENLPSAFAQHPWCSSLGSIGGGNHFAELQQVDQIINAELFALAGLDAQHLQLLVHS
                     GS"
BASE COUNT           80 a           76 c           83 g           76 t
ORIGIN      
        1 atccggcact ggtcggcaat gatatcggct gcggtatggc gctatggcaa acagatattc
       61 tcgctcgcaa atacaacgcc gataagtttg aaaagcgatt atcagatctg gatgacgttg
      121 ctgaagaaag ctggctggag gaaaacctgc cgtcagcatt tgcacagcat ccgtggtgca
      181 gctcgcttgg ctctatcggt ggcggcaatc atttcgctga actgcaacaa gttgatcaaa
      241 tcatcaacgc tgaactgttt gcactagcag gtctggatgc acaacatctg caactgttgg
      301 ttcatagcgg ctcgc
//
LOCUS       DAJVSY010000416          307 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.424, whole genome shotgun sequence.
ACCESSION   DAJVSY010000416 DAJVSY010000000
VERSION     DAJVSY010000416.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 307)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 307)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.424"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            4..243
                     /locus_tag="OQQ19_004401"
                     /pseudo
     CDS             4..243
                     /locus_tag="OQQ19_004401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004136079.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
BASE COUNT           88 a           60 c           64 g           95 t
ORIGIN      
        1 gtaattctac gcaaagttga aaaaatttat gacaatggat tcaaacctgt tcacggcatt
       61 gatctcgata taaacgatgg tgaattcatg gtttttgttg gaccatctgg gtgtgccaaa
      121 tcaactacat tacgcatgat tgcaggtctt gaagacgtat caggtggtga aatttacatt
      181 agcgaccgcc ttgttaatac ccttccgcct aaagatcgca gcattgcaat ggtgttccag
      241 aactaggtaa tgactccaac ttactgatag tgttttatgt tcagataatg cccgatgacc
      301 ttgtcat
//
LOCUS       DAJVSY010000417          302 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.425, whole genome shotgun sequence.
ACCESSION   DAJVSY010000417 DAJVSY010000000
VERSION     DAJVSY010000417.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.425"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>302
                     /locus_tag="OQQ19_004402"
     CDS             <1..>302
                     /locus_tag="OQQ19_004402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805746.1"
                     /translation="LDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADA
                     TESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKV"
BASE COUNT           63 a           89 c           79 g           71 t
ORIGIN      
        1 cttgaccgcc tttccgatac cgtctctgca cgcaatacct ccggattccg tgaacaggtc
       61 gctgcatggc tggaaaaact cagtgcctct gcggagcttc gacagcagtc tttcgctgtt
      121 gctgctgatg ccactgagag ctgtgaggac cgtgtcgcgc tcacatggaa caatctccgg
      181 aaaaccctcc tggtccatca ggcatcagaa ggccttttcg ataatgatac cggcgctctg
      241 ctctccctgg gcagggaaat gttccgcctc gaaattctgg aggacattgc ccgggataaa
      301 gt
//
LOCUS       DAJVSY010000418          282 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.426, whole genome shotgun sequence.
ACCESSION   DAJVSY010000418 DAJVSY010000000
VERSION     DAJVSY010000418.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.426"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            51..248
                     /locus_tag="OQQ19_004403"
     CDS             51..248
                     /locus_tag="OQQ19_004403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005096564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1805747.1"
                     /translation="MRKILQQKGDPDLIQCDYHLCNKQFLPEKAFTGELIYMHGNMIA
                     RKKRKYCGAACAEKDKMAHEL"
BASE COUNT          103 a           53 c           56 g           70 t
ORIGIN      
        1 acctcaggca gaccatcagt cataccggga ttaaaaaatg gctgtggaga atcagaaaaa
       61 ttctccagca aaaaggtgac ccggatttaa tacaatgtga ttaccatctc tgcaataaac
      121 agtttttacc tgaaaaagct tttactggcg agcttattta tatgcatgga aacatgattg
      181 ccagaaagaa acgaaaatat tgcggtgcag cttgtgccga aaaagacaag atggcacacg
      241 aactttaatt aactgaatat tcgaaactga atttatgcca gc
//
LOCUS       DAJVSY010000419          282 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.427, whole genome shotgun sequence.
ACCESSION   DAJVSY010000419 DAJVSY010000000
VERSION     DAJVSY010000419.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.427"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..272)
                     /locus_tag="OQQ19_004404"
     CDS             complement(<1..272)
                     /locus_tag="OQQ19_004404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MASE1 domain-containing protein"
                     /protein_id="HCS1805748.1"
                     /translation="MKLNATYIKIRDKWWGLPLFLPFLILPIFAHINTFAHISSGEVF
                     LFYLPLALMISMMMFFSWAALPGIALGIFVRKYAELGFYETLSLTA"
BASE COUNT           97 a           61 c           61 g           63 t
ORIGIN      
        1 ttagccgtta atgatagcgt ttcgtaaaaa cccagctctg catatttgcg gacaaaaatc
       61 cctaaggcga tccctggcaa tgccgcccag ctgaaaaaca tcatcatgct gatcatcagt
      121 gccagaggca gataaaagag aaaaacctca ccggaagaaa tatgcgcgaa agtattaatg
      181 tgggcgaaaa tgggcaagat taaaaaaggc aggaacagcg gaagccccca ccatttatca
      241 cgtattttta tataagttgc attcagtttc atagatgctc ag
//
LOCUS       DAJVSY010000420          277 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.428, whole genome shotgun sequence.
ACCESSION   DAJVSY010000420 DAJVSY010000000
VERSION     DAJVSY010000420.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 277)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 277)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..277
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.428"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            92..>277
                     /locus_tag="OQQ19_004405"
     CDS             92..>277
                     /locus_tag="OQQ19_004405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="IS21 family transposase"
                     /protein_id="HCS1805749.1"
                     /translation="MGSTVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQS
                     MLALPPEKKEYDVHPGEN"
BASE COUNT           72 a           77 c           76 g           52 t
ORIGIN      
        1 cgactgtgtc gccccttcag ggcacagact aaaggtaagg tggaacggat ggaacagttt
       61 ttacatccca ctaatgactc gcctgcgccc gatggggagc actgtcgatg ttgaaacagc
      121 caaccgccac ggtctgcgct ggctgcacga tgtcgctaac caacgaaagc atgaaacaat
      181 ccaggcccgt ccctgtgatc gctggctcga agagcagcag tccatgctgg cactgcctcc
      241 ggagaaaaaa gagtatgacg tgcatcctgg tgaaaat
//
LOCUS       DAJVSY010000421          277 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.429, whole genome shotgun sequence.
ACCESSION   DAJVSY010000421 DAJVSY010000000
VERSION     DAJVSY010000421.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 277)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 277)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..277
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.429"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..>277
                     /locus_tag="OQQ19_004406"
     CDS             <1..>277
                     /locus_tag="OQQ19_004406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001395480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1805750.1"
                     /translation="DIHLHPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVS
                     YVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQSWL"
BASE COUNT           82 a           71 c           78 g           46 t
ORIGIN      
        1 gatatccatc ttcatcccaa aatcggtgcg gactggcaac tgcgcggaca gcaaaaacgg
       61 gtggtcacgc cgggacagaa tgaaaaatat tatctggccg gagcgctgca cagcgggaca
      121 ggtaaagtca gctatgtggg cggcaacagc aaaagttcgg cgctgttcat cagcctgctg
      181 aagcggctta aagcgacata ccgtcgggcg aaaaccatca cgctgatcgt ggacaactac
      241 attatccaca aaagccggga aacacagagc tggctga
//
LOCUS       DAJVSY010000422          265 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.430, whole genome shotgun sequence.
ACCESSION   DAJVSY010000422 DAJVSY010000000
VERSION     DAJVSY010000422.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 265)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 265)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..265
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.430"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..>265)
                     /locus_tag="OQQ19_004407"
     CDS             complement(<1..>265)
                     /locus_tag="OQQ19_004407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HCS1805751.1"
                     /translation="LPWLSEADRRLQVQSDLPWWLVCRGAIHKFRCVPHLTGRRFEHG
                     VTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATG"
BASE COUNT           63 a           98 c           64 g           40 t
ORIGIN      
        1 ccctgtggcc tccagattat ccagatagag attctgaccg tgacgccacc agtcatcccc
       61 gcgatgaaaa tccggcatct caatccccgc cagatgataa gcatcccgga acagcgtgta
      121 acagtccgtc accccgtgct caaagcgccg cccggtgaga tgcggcacac agcggaactt
      181 gtgaatcgcc ccccggcaga ccagccacca cggcaaatca ctctgcacct gcagccgccg
      241 gtcagcctca ctcagccagg gcaga
//
LOCUS       DAJVSY010000423          250 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.431, whole genome shotgun sequence.
ACCESSION   DAJVSY010000423 DAJVSY010000000
VERSION     DAJVSY010000423.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 250)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 250)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..250
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.431"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            1..250
                     /locus_tag="OQQ19_004408"
                     /pseudo
     CDS             1..250
                     /locus_tag="OQQ19_004408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611435.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
BASE COUNT           61 a           61 c           74 g           54 t
ORIGIN      
        1 ctgctcggca agaaaacgat ggaaaatgaa ctcctcaaag aagccgttga atatggacgg
       61 gcaaaaaagt ggatagcgca cgcgccctta ttgcccgggg atggggagta agcttagtca
      121 gccgttgtct ccgggtgtcg cgtgcgcagt tgcacgtcat tctcagacga accgatgact
      181 ggatggatgg ccgccgcagt cgtcacactg atgatacgga tgtgcttctc cgtatacacc
      241 atgttatcgg
//
LOCUS       DAJVSY010000424          245 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.432, whole genome shotgun sequence.
ACCESSION   DAJVSY010000424 DAJVSY010000000
VERSION     DAJVSY010000424.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 245)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 245)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..245
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.432"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..99
                     /locus_tag="OQQ19_004409"
     CDS             <1..99
                     /locus_tag="OQQ19_004409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1805752.1"
                     /translation="DTGRNSADNVNGVYYRPLQKLINGTWYNVASI"
     gene            102..191
                     /locus_tag="OQQ19_004410"
                     /pseudo
     CDS             102..191
                     /locus_tag="OQQ19_004410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000902876.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
BASE COUNT           79 a           53 c           53 g           60 t
ORIGIN      
        1 gataccggcc gtaactcagc ggataacgtc aacggtgtgt attaccgacc gctgcaaaaa
       61 ctgattaatg gcacctggta taacgtagcg agtatttaac aatgttgcat ttaaaaaata
      121 ttactgcggg taatccgaaa actgcggaac aataccagat gacaaaaaaa tatgatatta
      181 cctggctttt ttgatatccc tgacaatccg tgtccggcag gtgcgcgaaa tctccacgaa
      241 acggt
//
LOCUS       DAJVSY010000425          241 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.433, whole genome shotgun sequence.
ACCESSION   DAJVSY010000425 DAJVSY010000000
VERSION     DAJVSY010000425.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 241)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 241)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..241
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.433"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..96)
                     /locus_tag="OQQ19_004411"
     CDS             complement(<1..96)
                     /locus_tag="OQQ19_004411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004986316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase"
                     /protein_id="HCS1805753.1"
                     /translation="MTQSDPRRQLVDTLTRWDGINLLNDDGKTWQQ"
BASE COUNT           61 a           62 c           56 g           62 t
ORIGIN      
        1 ctgctgccag gttttaccat catcattaag caaattgatg ccatcccaac gtgttaatgt
       61 atccaccaac tgacggcgcg gatcgctctg tgtcaaacca gatgtcgctg cttgcagagt
      121 aggtaaaaaa agcctcaggt taagatcctg acgactggtt tggcgaataa catcccatgc
      181 ctgatcagca gttaagcgtg gcttttgctc aagcagtcgg tcgatctccg taacgcgatc
      241 t
//
LOCUS       DAJVSY010000426          237 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.434, whole genome shotgun sequence.
ACCESSION   DAJVSY010000426 DAJVSY010000000
VERSION     DAJVSY010000426.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..237
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.434"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            5..>237
                     /locus_tag="OQQ19_004412"
     CDS             5..>237
                     /locus_tag="OQQ19_004412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1805754.1"
                     /translation="MSRKNQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW
                     VTAARKGLGTPGSRTVAELESEILQLRKALNEAR"
BASE COUNT           70 a           56 c           57 g           54 t
ORIGIN      
        1 aataatgagc agaaaaaacc aacgttactc taaagagttc aaagccgaag ctgtcagaac
       61 ggttcttgaa aatcaacttt cgatcagtga aggcgcttcc cgattatccc ttcctgaagg
      121 cactttagga caatgggtta ccgccgccag aaaagggctc ggtactcctg gttcccgcac
      181 ggtggctgaa ctggaatctg aaattctgca actgcgtaag gcgttaaatg aagctcg
//
LOCUS       DAJVSY010000427          232 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.435, whole genome shotgun sequence.
ACCESSION   DAJVSY010000427 DAJVSY010000000
VERSION     DAJVSY010000427.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 232)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 232)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..232
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.435"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..207)
                     /locus_tag="OQQ19_004413"
     CDS             complement(<1..207)
                     /locus_tag="OQQ19_004413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1805755.1"
                     /translation="MIVLILVFRLVIGVQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG
                     MTVSLVARQHGVAASQLFLWRKQYQ"
BASE COUNT           56 a           58 c           51 g           67 t
ORIGIN      
        1 ctggtattgc ttacgccaga gaaataactg gctggctgct acaccatgtt gccgggcaac
       61 gagggagacc gtcatccccg gttcaaagct ctgctgaaca attgcgatct tttcctgtgt
      121 ggtacgccgt ctgcgtttct ccggccctaa gacatcaatc atctgtactc caatgactag
      181 tctaaaaact agtattaaga ctatcactta tttaagtgat actggttgtc tg
//
LOCUS       DAJVSY010000428          230 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.436, whole genome shotgun sequence.
ACCESSION   DAJVSY010000428 DAJVSY010000000
VERSION     DAJVSY010000428.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 230)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 230)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..230
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.436"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(<1..>230)
                     /locus_tag="OQQ19_004414"
     CDS             complement(<1..>230)
                     /locus_tag="OQQ19_004414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706811.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HCS1805756.1"
                     /translation="DVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEA
                     WRAEQEAKPFTFEWNGRIWNAGPDSLGRLSPV"
BASE COUNT           39 a           74 c           58 g           59 t
ORIGIN      
        1 taccggggac aggcggccca gtgagtcggg accagcattc cagatacgac cgttccattc
       61 aaacgtgaac ggcttcgcct cctgttctgc gcgccatgct tcaatttcct gacgtctggc
      121 ctctctggcc gcttccagca tttctggtgt cacagtgaat ggggctatct caccccattt
      181 gccgctttgc agttcctgcc agatttgctg acccgtcgga gcgacatcat
//
LOCUS       DAJVSY010000429          228 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.denovo.437, whole genome shotgun sequence.
ACCESSION   DAJVSY010000429 DAJVSY010000000
VERSION     DAJVSY010000429.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 228)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 228)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..228
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.denovo.437"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(1..228)
                     /locus_tag="OQQ19_004415"
                     /pseudo
     CDS             complement(1..228)
                     /locus_tag="OQQ19_004415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003912930.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT           50 a           67 c           52 g           59 t
ORIGIN      
        1 tgttcttccc cagcacaatc accgaaaatg gttcgtcgac cgcgcagagt tcccgagtcc
       61 cggtttacct gagcaacacc gacaagtgcg ctgatttcac gtctcgagag gctgctcgat
      121 tcaggcattt ccgccagcaa tgctgcggca gtcatggctc taacacctca gacgttcagt
      181 aagctcttta aagtaactct gaatgtgcct gttcatatct gggtcttc
//
LOCUS       DAJVSY010000430        11188 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.guided.138, whole genome shotgun sequence.
ACCESSION   DAJVSY010000430 DAJVSY010000000
VERSION     DAJVSY010000430.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11188)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11188)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11188
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.guided.138"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            complement(37..603)
                     /locus_tag="OQQ19_004416"
                     /pseudo
     CDS             complement(37..603)
                     /locus_tag="OQQ19_004416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418580.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
     gene            complement(822..1799)
                     /gene="epmA"
                     /locus_tag="OQQ19_004417"
     CDS             complement(822..1799)
                     /gene="epmA"
                     /locus_tag="OQQ19_004417"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000004771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HCS1805757.1"
                     /translation="MSETASWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMS
                     QATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNE
                     EMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLEID
                     PLSADKTQLREVAAKLNLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPAS
                     QASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQ
                     HPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDRA"
     gene            2124..3932
                     /gene="frdA"
                     /locus_tag="OQQ19_004418"
     CDS             2124..3932
                     /gene="frdA"
                     /locus_tag="OQQ19_004418"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HCS1805758.1"
                     /translation="MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS
                     HTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGC
                     PWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLD
                     ILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAL
                     SHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLG
                     EPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICE
                     LAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRL
                     GSNSLAELVVFGRMAGEQATERAATAGNGNEEAIEAQAAGVEQRLKDLVNQDGGENWA
                     KIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIE
                     LGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEY
                     SDVKITTLPPAKRVYGGEADAADKAEAANKKEKANG"
     gene            3925..4659
                     /gene="frdB"
                     /locus_tag="OQQ19_004419"
     CDS             3925..4659
                     /gene="frdB"
                     /locus_tag="OQQ19_004419"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur protein"
                     /protein_id="HCS1805759.1"
                     /translation="MAEMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYI
                     KDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERD
                     LVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACP
                     QFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKH
                     VDPAAAIQQGKVESSKDFLIATLKPR"
     gene            4670..5065
                     /gene="frdC"
                     /locus_tag="OQQ19_004420"
     CDS             4670..5065
                     /gene="frdC"
                     /locus_tag="OQQ19_004420"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HCS1805760.1"
                     /translation="MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELI
                     FGLFALKNGPDAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDE
                     KMGPEPIIKSLWAVTVVATIVILFVALYW"
     gene            5076..5435
                     /gene="frdD"
                     /locus_tag="OQQ19_004421"
     CDS             5076..5435
                     /gene="frdD"
                     /locus_tag="OQQ19_004421"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HCS1805761.1"
                     /translation="MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL
                     FPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFY
                     GLAAILTVVTLIGIVTI"
     gene            5498..6631
                     /locus_tag="OQQ19_004422"
     CDS             5498..6631
                     /locus_tag="OQQ19_004422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BlaEC family class C beta-lactamase"
                     /protein_id="HCS1805762.1"
                     /translation="MFKTTLCALLITASCSTFAAPQQINDIVHRTITPLIEQQKIPGM
                     AVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLS
                     DPATKYWPELTAKQWNGITLLHLATYTAGGLPLQMPDEVKSSSDLLRFYQNWQPAWAP
                     GTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWG
                     YREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLTPLDINEKTLQQGIQLAQSRYW
                     QTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAIKPPTPAVRASWVHKTGA
                     TGGFGSYVAFIPEKELGIVMLANKNYPNPARVAAACQILNALQ"
     gene            6720..7253
                     /gene="blc"
                     /locus_tag="OQQ19_004423"
     CDS             6720..7253
                     /gene="blc"
                     /locus_tag="OQQ19_004423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin Blc"
                     /protein_id="HCS1805763.1"
                     /translation="MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWY
                     EIARFDHRFERGLEKVTATYSLRDGGGLNVINKGYNPDREMWQQSEGKAYFTGAPTRA
                     ALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVAT
                     REGFDVSKFIWVQQPGS"
     gene            complement(7250..7567)
                     /gene="sugE"
                     /locus_tag="OQQ19_004424"
     CDS             complement(7250..7567)
                     /gene="sugE"
                     /locus_tag="OQQ19_004424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418572.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound efflux SMR
                     transporter SugE"
                     /protein_id="HCS1805764.1"
                     /translation="MSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMA
                     LLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKL
                     STH"
     gene            complement(7749..7895)
                     /gene="ecnB"
                     /locus_tag="OQQ19_004425"
     CDS             complement(7749..7895)
                     /gene="ecnB"
                     /locus_tag="OQQ19_004425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein toxin entericidin B"
                     /protein_id="HCS1805765.1"
                     /translation="MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAAT
                     KAQQ"
     gene            complement(8006..8131)
                     /gene="ecnA"
                     /locus_tag="OQQ19_004426"
     CDS             complement(8006..8131)
                     /gene="ecnA"
                     /locus_tag="OQQ19_004426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein antitoxin entericidin A"
                     /protein_id="HCS1805766.1"
                     /translation="MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS"
     gene            complement(8183..8749)
                     /gene="efp"
                     /locus_tag="OQQ19_004427"
     CDS             complement(8183..8749)
                     /gene="efp"
                     /locus_tag="OQQ19_004427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HCS1805767.1"
                     /translation="MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLR
                     RLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGD
                     NAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGA
                     VVKVPLFVQIGEVIKVDTRSGEYVSRVK"
     gene            8791..9840
                     /gene="epmB"
                     /locus_tag="OQQ19_004428"
     CDS             8791..9840
                     /gene="epmB"
                     /locus_tag="OQQ19_004428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000940527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HCS1805768.1"
                     /translation="MAHIVTLNTPSREDWLTQLADVVTDPDELLRLLNIDADEKLLAG
                     RSAKKLFALRVPRSFIDRMEKGNPDDPLLRQVLTSQDEFVVASGFSTDPLEEQHSVVP
                     GLLHKYHNRALLLVKGGCAVNCRYCFRRHFPYAENQGNKRNWQTALEYVAAHPELDEM
                     IFSGGDPLMAKDHELDWLLTQLEAIPHIKRLRIHSRLPIVIPARITDALVERFSHSTL
                     QILLVNHINHANEIDETFRQAMAKLRRVGVTLLNQSVLLRDVNDNAQTLANLSNALFD
                     AGVMPYYLHVLDKVQGAAHFMVSDDEARQIMRELLTLVSGYLVPKLAREIGGEPSKTP
                     LDLQLRQQLLIKQGS"
     gene            10214..11083
                     /locus_tag="OQQ19_004429"
     CDS             10214..11083
                     /locus_tag="OQQ19_004429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjeJ family protein"
                     /protein_id="HCS1805769.1"
                     /translation="MAISIKGVNTGVIRKSNNFIALALKIKEPRNKESLFFMSVMELR
                     DLLIALESRLHQKHKLDAAARLQYEQARDKVIKKMAENIPEILVDELKNADINRRVNT
                     LELTDNQGENLTFVLTLHDGSKCELVVNELQIEMLARAIIHAINNAEMRELALRITSL
                     LDFLPLYDVDCQENGNLEYDTYSQPEWKHNLFDHYLAVLYRFKDESGKEQFSGAVVKT
                     REATPGKEVEAITRRMLDFSPRLKKLAGVPCQVYVRTVAANNAQPLTQDQCLRALHHL
                     RVQSTSKTAPQAK"
BASE COUNT         2934 a         2829 c         2787 g         2638 t
ORIGIN      
        1 atcatacact aaatcagtaa gttggcagca ttacccgaaa tgcccaccat ttaataacaa
       61 aatagtaatg cttactaaca gcaatactaa attcagacac attactgcaa taccgcccac
      121 cgcagtaatg cgggcaattt tattaatccc ctttgaagca acgacggtga ccagaatcat
      181 ccatgctact gccagcagac caaccacctg cgtaggctcc agtccggcaa tacgccagtg
      241 ctgggtcatg tcgctaccat agaggaatgt tgagaacggt acccaaactt tcgcggaggt
      301 actcaccatc cagatgatat aagaggaaaa ccacataaac gtaccaatga aggcaaaacg
      361 tggtccgaca ctattattca tccaggaata gataccacct tcttctttgc gataagcagc
      421 tcccatttca gccatcatta aggcgaatgg aataaagaat aacaatgcag aaaatatata
      481 aaagggaatc gcactataac ccattaagta ataagccgat gggctattgg caaatccaaa
      541 tacggaagta aagatcatca atatgagtcc tatcagactc atctttttta tcgtgtgagg
      601 catgaaacca tccttcattt cagcgcgtgt ataacacgtg cccactgaac tgcactgcgc
      661 aacattgagc aggcagcgta aaaaccaata cagaattgat acccggatga tatcaaatat
      721 ccagtcttaa attgtggcct ttaacggaaa aatgaaaaca tatgctacag aatggcgctt
      781 atcacgccat tcttcgctgt taattcagta atttttcaga attatgcccg gtcaacgcta
      841 aaggcgatga cttcagccag tgtctccgcg cccagcgcca acatcaccag acgatcaaca
      901 cctaatgcca cgccggaaca gtcaggcata ccgactttca aggcttcaat cagattctgg
      961 tcaatggggt gctgcggcaa accgcgcgcc gcgcgcttac ggttatcttg ttcaaagcgt
     1021 tgttgctgct cacgggcatc cgttaattca tggaaaccat tcgccagctc aataccttta
     1081 taataaacct caaagcgttc agcgacccga tgatcttcgg tactgatttg cgccagtgat
     1141 gcctggctgg ctggaaagtg gtacacaaag gtcggttttt ctttgccaat atttggctct
     1201 acgccaaagg taaacagcaa ttgtagcaac gtgtcgcggt cttcttcggt atcagcaacg
     1261 ttactcaaat tcagtttcgc tgcgacttcc cgcagttgcg ttttgtcggc agagagcggg
     1321 tcaatttcca gataacgcaa gaaagcttgt tgataagaaa ggctttctgc tgccgggcag
     1381 tccagcacct gttgtaagag atcgtccacc tcgttcatca accggtacat atcatagtgc
     1441 ggtcgatacc actcaagcat agtgaactca gggttgtgat aacgccccat ctcttcatta
     1501 cggaagctgc ggcacagctg gaataccggc ccacaaccgg caaccagcag gcgtttcata
     1561 tggtattccg ggctggtcat taaccagaga ttcatcccct gcgaatgccc ggggccaacg
     1621 aaacgtgtct caaacgggac caaatgaata tcggttaccg tcgcctggct catacaaggc
     1681 gtctccacct ccagcactcc acgatcagca aagaaacgac ggatctccgc cataatcgcc
     1741 gcgcgtttta ataagttagg aatggatgcg ctcggctgcc aggatgccgt ttcgctcata
     1801 gttaaatctc cagtttttga caagggcacg aagtctactc gcaacgcgac ggcgagacaa
     1861 attttacgca ggaatcaaac agcggtgggc agtgactaaa aaaagcacga tctgatggtt
     1921 tagtaattaa attaatcatc ttcagtgata atttagccct cttgcgcact aaaaaaatcg
     1981 atctcgtcaa atttcagact tatccatcag actatactgt tgtacctata aaggagcagt
     2041 ggaatagcgt tcgcagaccg taactttcag gcacttaccc tgaagtacgg ggctgtggga
     2101 taaaaacaat ctggaggaat gtcgtgcaaa cctttcaagc cgatcttgcc attgtaggcg
     2161 ccggtggcgc gggattacgt gctgcaattg ctgccgcgca ggcaaatcca aatgcaaaaa
     2221 tcgcactaat ctcaaaagta tacccgatgc gtagccatac cgttgctgca gaagggggct
     2281 ccgccgctgt cgcgcaggat catgacagct tcgaatatca ctttcacgat acagtagcgg
     2341 gtggcgactg gttgtgtgag caggatgtcg tggattattt cgtccaccac tgcccaaccg
     2401 aaatgaccca actggaactg tgggggtgcc catggagccg tcgcccggat ggtagcgtca
     2461 acgtacgtcg cttcggcggc atgaaaatcg agcgcacctg gttcgccgcc gataagaccg
     2521 gcttccatat gctgcacacg ctgttccaga cctctctgca attcccgcag atccagcgtt
     2581 ttgacgaaca tttcgtgctg gatattctgg ttgatgatgg tcatgttcgc ggcctggtag
     2641 caatgaacat gatggaaggc acgctggtgc agatccgtgc taacgcggtc gttatggcta
     2701 ctggcggtgc gggtcgcgtt tatcgttaca acaccaacgg cggcatcgtt accggtgacg
     2761 gtatgggtat ggcgctaagc cacggcgttc cgctgcgtga catggaattc gttcagtatc
     2821 acccaaccgg tctgccaggt tccggtatcc tgatgaccga aggctgccgt ggtgaaggcg
     2881 gtattctggt caacaaaaat ggctaccgtt atctgcaaga ttacggcatg ggcccggaaa
     2941 ctccgctggg cgagccgaaa aacaaatata tggaactggg tccacgcgac aaagtttctc
     3001 aggccttctg gcacgaatgg cgtaaaggca acaccatctc cacgccgcgt ggcgatgtgg
     3061 tttatctcga cttgcgtcac ctcggcgaga aaaaactgca tgaacgtctg ccgttcatct
     3121 gcgaactggc gaaagcgtac gttggcgtcg atccggttaa agaaccgatt ccggtacgtc
     3181 cgaccgcaca ctacaccatg ggcggtatcg aaaccgatca gaactgtgaa acccgcatta
     3241 aaggtctgtt cgccgtgggt gaatgttcct ctgttggtct gcacggtgca aaccgtctgg
     3301 gctccaactc cctggcggaa ctggtggtct tcggccgtat ggccggtgaa caagcgacag
     3361 agcgtgcagc aactgccggt aatggcaacg aagaggcaat tgaagcgcag gcagctggcg
     3421 ttgaacaacg tctgaaagat ctggttaacc aggatggcgg cgaaaactgg gcgaagatcc
     3481 gcgacgaaat gggcctagca atggaagaag gttgcggtat ctaccgtacg ccggaactga
     3541 tgcagaaaac catcgacaag ctggcagagc tgcaggaacg cttcaagcgc gtgcgcatca
     3601 ccgacacctc cagcgtgttc aacaccgacc tgctctacac cattgaactg ggccacggtc
     3661 tgaacgttgc tgaatgtatg gcgcactccg caatggcacg taaagagtcc cgcggcgcac
     3721 accagcgtct ggacgaaggt tgcaccgagc gtgacgacgt caacttcctc aaacacaccc
     3781 tcgccttccg cgatgctgat ggcacgactc gcctggagta cagcgacgtg aagattacta
     3841 cgctgccgcc agctaaacgc gtttacggtg gcgaagcgga tgcagccgat aaggcggaag
     3901 cagccaataa gaaggagaag gcgaatggct gagatgaaaa acctgaaaat tgaggtggtg
     3961 cgctataacc cggaagtcga taccgcaccg catagcgcat tctatgaagt gccttatgac
     4021 gcaactacct cattactgga tgcgctgggc tacatcaaag acaacctggc accggacctg
     4081 agttaccgct ggtcctgccg tatggcgatt tgtggttcct gcggcatgat ggttaacaac
     4141 gtgccaaaac tggcatgtaa aaccttcctg cgtgattaca ccgacggtat gaaggttgaa
     4201 gcgttagcta acttcccgat tgaacgcgat ctggtggtcg atatgaccca cttcatcgaa
     4261 agtctggaag cgatcaaacc gtacatcatc ggcaactccc gcaccgcgga tcagggtact
     4321 aacatccaga ccccggcgca gatggcaaag tatcaccagt tctccggttg catcaactgt
     4381 ggtctgtgct acgccgcgtg cccgcagttt ggcctgaacc cagagttcat cggtccggct
     4441 gccattacgc tggcgcatcg ttataacgaa gatagccgcg accacggtaa gaaggagcgt
     4501 atggcgcagt tgaacagcca gaacggcgta tggagctgta ctttcgtggg ctattgctcc
     4561 gaagtctgcc cgaaacacgt cgatccggct gcggccattc agcagggcaa agtagaaagt
     4621 tcgaaagact ttcttatcgc gaccctgaaa ccacgctaag gagtgcaaca tgacgactaa
     4681 acgtaaaccg tatgtacggc caatgacgtc cacctggtgg aaaaaattgc cgttttatcg
     4741 cttttacatg ctgcgcgaag gcacggcggt tccggctgtg tggttcagca ttgaactgat
     4801 tttcgggctg tttgccctga aaaatggccc ggacgcctgg gcgggattcg tcgacttttt
     4861 acaaaacccg gttatcgtga tcattaacct gatcactctg gcggcagctc tgctgcacac
     4921 caaaacctgg tttgaactgg caccgaaagc ggccaatatc attgtaaaag acgaaaaaat
     4981 gggaccagag ccaattatca aaagtctctg ggcggtaact gtggttgcca ccatcgtaat
     5041 cctgtttgtt gccctgtact ggtaaggagc ctgagatgat taatccaaat ccaaagcgtt
     5101 ctgacgaacc ggtattctgg ggcctcttcg gggccggtgg tatgtggagc gcaattattg
     5161 cgccggtgat gatcctgctg gtgggtattc tgctgccact ggggctgttt ccgggtgatg
     5221 cgctgagcta cgagcgcgtt ctggcgttcg cgcagagctt cattggtcgc gtattcctgt
     5281 tcctgatgat cgttctgccg ctgtggtgtg gtttacaccg tatgcaccac gcgatgcacg
     5341 atctgaaaat tcacgtgcct gcgggcaaat gggttttcta cggtctggct gctatcctga
     5401 cagttgtcac gctgattggt atcgttacaa tctaacgtat cgccaatgta aatccggccc
     5461 gcctatggcg ggccgttttg tatggaaacc agaccttatg ttcaaaacga cgctctgcgc
     5521 cttattaatt accgcctctt gctccacatt tgctgcccct caacaaatca acgatattgt
     5581 gcatcgcaca attaccccgc ttatagagca acaaaagatc cccggtatgg cggtggcggt
     5641 aatttatcag ggtaaacctt attactttac ctggggctat gcggacatcg ccaaaaagca
     5701 gcccgtcaca cagcaaacgt tgtttgagtt aggttcggtc agcaaaacat ttacgggcgt
     5761 gcttggtggc gatgctattg ctcgagggga aatcaagtta agcgatcccg caacaaaata
     5821 ctggcctgaa cttaccgcta aacagtggaa tgggatcaca ctattacatc ttgcgaccta
     5881 caccgctggc ggcctgccat tgcagatgcc ggatgaagtg aaatcctcaa gcgacttgct
     5941 gcgcttctat caaaactggc agcctgcatg ggctccagga acacaacgtc tgtatgccaa
     6001 ctccagtatc ggtttgttcg gcgcactggc tgtgaagccg tctggtttga gttttgagca
     6061 ggcgatgcaa actcgtgtct tccagccact caaactcaac catacgtgga ttaatgtacc
     6121 gcccgcagaa gaaaagaatt acgcctgggg atatcgcgaa ggcaaggcag ttcatgtttc
     6181 gccaggggcg ttagatgctg aagcttatgg tgtgaagtcg accattgaag atatggcccg
     6241 ctgggtgcaa agcaatttaa ccccccttga tatcaatgag aaaacgcttc aacaagggat
     6301 acaactggca caatctcgct actggcaaac cggcgatatg tatcagggcc tgggctggga
     6361 aatgctggac tggccggtca atcctgacag catcattaac ggcagtgaca ataaaattgc
     6421 actggcagca cgcccggtaa aagcgattaa gcccccaact cctgcagtac gcgcatcatg
     6481 ggtacataaa acgggggcga ccggcggatt tggtagctat gtcgcgttta ttccagaaaa
     6541 agagctgggt atcgtgatgc tggctaacaa aaactatccc aatccagcga gagtcgccgc
     6601 cgcctgtcag attctcaacg ctctacagta aaatttcatc gggtccgaat tttcggacct
     6661 tttctgcgct tttccttgct gtcatctaca cttagaaaaa aaccagtaag gaaacattta
     6721 tgcgcctgct ccctctcgtt gccgcagcga cagctgcatt tctggtcgtt gcctgcagtt
     6781 ctcctacgcc gccgcgtggc gtgacagtag tgaataattt cgacgctaaa cgctatctcg
     6841 gtacctggta tgagattgcc cgttttgatc accgttttga acgtggactg gaaaaagtca
     6901 ccgcaacata cagtctgcgt gatggcggcg gcctgaatgt catcaataaa ggctataacc
     6961 ctgacagaga aatgtggcag cagagtgaag ggaaagcgta ctttaccggc gcaccaacac
     7021 gcgctgcgct gaaagtgtca ttctttggtc ctttctatgg cggttataac gtcattgcac
     7081 ttgatcggga ataccgccat gcgctggttt gcggcccgga ccgcgactac ctgtggatac
     7141 tctcccgcac gccaaccatt tctgacgaag tgaaacagga gatgctggca gtcgcgaccc
     7201 gggaagggtt tgatgtcagt aagtttattt gggtacagca gcccggtagt tagtgagtgc
     7261 tgagtttcag accaataatc cccaatacga ttaacgccag actcgccagg cgcatcgggt
     7321 tagcggactc accgagcagc acaatgccgg tgatagccgc gccgactgcg ccaatacccg
     7381 tccacacggc ataagccgtc cctactggta acgatttcat cgcccaggca agtagcgcca
     7441 tactgacaat catcgccgtc acggtaataa cactcggcgt caaacgacta aagccgtggg
     7501 tatatttcag gccaacggcc cataccactt ccagcagacc agcaataact aagataatcc
     7561 aggacatatc aggctccgga gaattggggc cgtccccggt gaaaagacgc gtttgcaggt
     7621 cgtcctgcaa agctgatggt tgaacggata ttttgccagg tggcagggga atttcaacta
     7681 ttaccttagt gactatcgca gaaaaaacaa acggcacgac acagctgtcg taccgttatt
     7741 gcttattgct attgctgcgc tttcgttgct gcgccagaaa tcgcgttacc gccatcagaa
     7801 atgtcttcac caacgccacg cgtggtgttg caggcagtta atactgttga aagcaccaga
     7861 acagaaaaga tcgctgcaat tgtcttcttc accataacgt cttcctttta ggtaatgtta
     7921 tttatgtttg cctatagcaa attaataata gacaacatcg ccaaaaatga cggaaatctg
     7981 atgatttttc ggaagagaag aaaaattagc tggcagcgcg agagatggag ttgccgagat
     8041 gtttgatgtc ttcgccgaaa ccgcgagcgg tgttacagcc cgtgagcagc gtactggcaa
     8101 gcaaaacaag aacgataagg cgtttcatca tctctgacct gaataagtga tggtgcagcc
     8161 tgcaggccgc accacaaccg cattacttca cgcgagagac gtattcacca gagcgggtat
     8221 ccactttgat gacttcgccg atttgtacga acagcggaac cttaaccaca gcgccagtag
     8281 acagggtagc cggtttgccg ccagtacctg cggtatcacc tttcaggccc ggatcggtat
     8341 caacgatttc cagttcaacg aagttcggcg gagtaacgga gatcggctga ccattccaca
     8401 gagttacgat acactctgcc tgatccagca gccatttagc gttatcgcca attgcttttg
     8461 catcagcaga cagctgctcg aaagtttcgt tgttcatgaa gtgccagaac tcaccgtcgt
     8521 tgtacaggta agtcaggttc atatcgacaa catcagcgcc ttcagcggaa tcagtagatt
     8581 tgaaggtttt ttctacgcga gtaccggtca gcagacgacg cagtttaacg cgagcaaatg
     8641 cctggccttt acccggtttt acgaattcac tcgcttcaac cgcgtaaggt tcgccgtcta
     8701 acatgatttt aagaccagca cgaaaatcgt tgctatagta cgttgccata aggccctctg
     8761 aaatttgtta attggtagct aagccacaaa atggcgcata ttgtaaccct aaatacccca
     8821 tccagagaag attggttaac gcaacttgcc gatgttgtga ccgatcctga tgaacttctg
     8881 cgtcttttga atatagacgc ggacgaaaaa ctgttggccg gacgcagcgc caaaaagctg
     8941 tttgccctgc gtgtgccccg ctcatttatc gatcgcatgg agaaaggcaa tccggacgat
     9001 cctcttttgc gtcaggtact tacctcgcaa gatgagtttg tcgtcgcgtc cggattctcc
     9061 accgacccac tggaagaaca gcacagcgta gtgcctggtt tgttgcataa ataccacaac
     9121 cgggcgcttt tgctggtcaa aggcggctgc gcggtaaatt gccgctattg cttccgtcgc
     9181 cacttcccct atgccgaaaa tcagggcaac aagcgtaact ggcagactgc acttgagtat
     9241 gttgctgcgc atccggaact ggacgagatg attttctccg gcggcgatcc gctgatggcg
     9301 aaagatcacg agctggactg gttgctcaca caactggaag ccatcccgca tatcaaacgt
     9361 ctgcggattc acagtcgtct gccgattgtg atcccggcac gcatcacaga tgcgctggtt
     9421 gaacgctttt cacattctac gctgcaaatc ctgctggtga atcacatcaa ccatgccaat
     9481 gagatagatg aaacattccg tcaggcgatg gctaagttgc gccgggtagg cgttactttg
     9541 ctgaaccaga gcgttctgtt acgtgatgtg aacgataacg cacaaacgct ggcaaacctg
     9601 agtaatgcgt tgttcgatgc cggcgtgatg ccgtattacc tgcatgtgct cgataaagta
     9661 cagggcgcag cgcattttat ggtgagtgat gacgaagcac ggcagattat gcgtgagttg
     9721 ctgacattgg tgtcgggata tctggtgccg aaactggcgc gagaaattgg cggcgaaccc
     9781 agcaaaacgc cgctggatct ccagctacgc cagcagttac tgattaaaca gggaagttaa
     9841 acattaaaat tgcctgatgc gctacgctta tcaggcctac atcgtgcatt gaaattgaat
     9901 ggatttgcaa tgaactgtag gccggataag gcgtttacgc cgcatccggc aagagcaaca
     9961 aacgcaagta cagcaacctg tcattaaact gagaaattta atctttgccc gttgcataac
    10021 ctttaattat tcatatgcat tgctgttgtt actttttata tagctaacac caataattaa
    10081 cctttctttt ctgtttatat agagtgagca cggctattta tgttatttta acaactatta
    10141 ctaccaagcc catttatctg gcttataaat taaaattaat tatttaattg agaaatggtt
    10201 agggagaacc tacatggcca taagcatcaa gggtgttaat accggtgtta ttcgcaagag
    10261 taataatttc attgcactgg cgctgaaaat taaagaacct cgcaataaag aatcgttgtt
    10321 ctttatgtct gtcatggaac tgcgcgacct gctgattgcg ctggaaagtc gtctgcatca
    10381 aaagcataaa ctggatgctg ctgcacgcct tcagtatgag caagctcgcg ataaagtcat
    10441 taagaaaatg gcagaaaaca tcccagaaat tctggttgat gagcttaaaa atgccgatat
    10501 taatcgtcgg gttaacacgc tggaacttac cgataatcaa ggcgaaaatc ttaccttcgt
    10561 attaacgcta catgacggta gcaaatgtga gttagtcgtc aatgagttgc agattgaaat
    10621 gctagcgcga gcaatcattc atgcaattaa taatgcggaa atgcgtgaac tggcattacg
    10681 tattacctca ctgttagatt tcctgccgtt atatgacgtt gactgccagg aaaatggcaa
    10741 tctggaatat gacacctatt cccaaccgga atggaaacat aacttgttcg accattatct
    10801 ggcggtgctt taccgcttta aagatgaaag tggcaaagaa caatttagcg gcgcagtggt
    10861 gaaaacgcgt gaagcaacgc cgggtaaaga agtagaggcg atcactcgcc gaatgcttga
    10921 tttcagccca cgactgaaaa aactcgcggg tgtgccatgt caggtctatg ttcgcaccgt
    10981 agcggcgaat aacgcccaac cgctaaccca ggatcaatgc ttacgcgcgc tgcatcactt
    11041 acgtgttcaa tccaccagca aaactgcacc acaggcgaaa taatctcatc tttgctaatg
    11101 cgaggctgga gccatccagc ctgaaatgac tgataacgtg atcgttggtc atgccggatg
    11161 cggcgtaaac gccttatccg gcctacaa
//
LOCUS       DAJVSY010000431        10872 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 602068
            SAMEA8903790-rid15856733.guided.143, whole genome shotgun sequence.
ACCESSION   DAJVSY010000431 DAJVSY010000000
VERSION     DAJVSY010000431.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8903790
            Sequence Read Archive: ERR6006319
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10872)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10872)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478949.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478949.1
            Genome Coverage       :: 300x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 03:46:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,441
            CDSs (total)                      :: 4,353
            Genes (coding)                    :: 3,997
            CDSs (with protein)               :: 3,997
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 356
            CDSs (without protein)            :: 356
            Pseudo Genes (ambiguous residues) :: 0 of 356
            Pseudo Genes (frameshifted)       :: 191 of 356
            Pseudo Genes (incomplete)         :: 98 of 356
            Pseudo Genes (internal stop)      :: 103 of 356
            Pseudo Genes (multiple problems)  :: 34 of 356
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10872
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8903790-rid15856733.guided.143"
                     /serovar="S. boydii 4"
                     /isolate="602068"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="Bangladesh"
                     /collection_date="2009-02-13"
     gene            <1..651
                     /locus_tag="OQQ19_004430"
     CDS             <1..651
                     /locus_tag="OQQ19_004430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000521550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA ligase RtcB family protein"
                     /protein_id="HCS1805770.1"
                     /translation="HPIIRGTNKVTGQSILQRHIASFSHHGLPQGSDDALRYIAEHDD
                     ALAFACINRQMIALRIMQQVKATGSPVLDVAHNFVSACQIGDQQGWLHRKGATPDDNG
                     LVIIPGSRGDYSWIVQPVANEKTLHSLAHGAGRKWGRTECKWRLAAKYTVTQLSRTEL
                     GSRIICRDKQLIFEEAPQAYKSAESVVQCLVQAGLIIPVARLRPVLTLKNSGGKKG"
     gene            648..1262
                     /locus_tag="OQQ19_004431"
     CDS             648..1262
                     /locus_tag="OQQ19_004431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000602105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor H"
                     /protein_id="HCS1805771.1"
                     /translation="MILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETET
                     GRYSDTLRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRFTADE
                     QEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLL
                     IAWKLEQQQQENSAVLKSQRRMFHHQIERGNPRRTFTGMAFIEG"
     gene            complement(1319..2776)
                     /gene="pepD"
                     /locus_tag="OQQ19_004432"
     CDS             complement(1319..2776)
                     /gene="pepD"
                     /locus_tag="OQQ19_004432"
                     /EC_number="3.4.13.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosol nonspecific dipeptidase"
                     /protein_id="HCS1805772.1"
                     /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKG
                     FHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDG
                     EWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWL
                     QADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGG
                     EIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDAL
                     KSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRN
                     SDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA
                     KGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIG
                     PTITGPHSPDEQVHIESVGHYWTLLTELLKEIPAK"
     gene            3037..3495
                     /gene="gpt"
                     /locus_tag="OQQ19_004433"
     CDS             3037..3495
                     /gene="gpt"
                     /locus_tag="OQQ19_004433"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HCS1805773.1"
                     /translation="MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA
                     LLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIRE
                     MYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR"
     gene            3587..4831
                     /gene="frsA"
                     /locus_tag="OQQ19_004434"
     CDS             3587..4831
                     /gene="frsA"
                     /locus_tag="OQQ19_004434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase FrsA"
                     /protein_id="HCS1805774.1"
                     /translation="MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTI
                     PHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA
                     TQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEA
                     AQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYF
                     APRGIVMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGA
                     NVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEA
                     LRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFN
                     PVYRNFDKGLQEITGWIEKRLC"
     gene            4889..5290
                     /gene="crl"
                     /locus_tag="OQQ19_004435"
     CDS             4889..5290
                     /gene="crl"
                     /locus_tag="OQQ19_004435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-binding protein Crl"
                     /protein_id="HCS1805775.1"
                     /translation="MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNV
                     KPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLRE
                     FHEKLRELLTTLNLKLEPADDFRDEPVKLTA"
     gene            complement(5329..6384)
                     /gene="phoE"
                     /locus_tag="OQQ19_004436"
     CDS             complement(5329..6384)
                     /gene="phoE"
                     /locus_tag="OQQ19_004436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoporin PhoE"
                     /protein_id="HCS1805776.1"
                     /translation="MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYM
                     SDNDSKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGL
                     KYKDLGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFF
                     GVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQN
                     LQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQF
                     DFGLRPSLGYVLSKGKDIEGIGGEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNK
                     LNINNDDIVAIGMTYQF"
     gene            6672..7775
                     /gene="proB"
                     /locus_tag="OQQ19_004437"
     CDS             6672..7775
                     /gene="proB"
                     /locus_tag="OQQ19_004437"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HCS1805777.1"
                     /translation="MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHR
                     IVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQML
                     LTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILA
                     GADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKL
                     QAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAG
                     EITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDA
                     LRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR"
     gene            7787..9040
                     /gene="proA"
                     /locus_tag="OQQ19_004438"
     CDS             7787..9040
                     /gene="proA"
                     /locus_tag="OQQ19_004438"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HCS1805778.1"
                     /translation="MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILN
                     ANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSG
                     LRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQ
                     DALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVI
                     TGGIGVCHIYVDESVEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQ
                     MAESGVTLHADAAALAQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIR
                     EHGTQHSDAILTCDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLH
                     ARGPMGLEALTTYKWIGIGDYTIRA"
     gene            9155..9230
                     /locus_tag="OQQ19_004439"
     tRNA            9155..9230
                     /locus_tag="OQQ19_004439"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9188..9190,aa:Thr,seq:cgt)
     gene            complement(9245..10408)
                     /locus_tag="OQQ19_004440"
     CDS             complement(9245..10408)
                     /locus_tag="OQQ19_004440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HCS1805779.1"
                     /translation="MSLFRRGEIWYASFTLPNGKRFKQSLGTKDKRQATELHDKLKAE
                     AWRVSKLGEIPDITFEEACVRWLEEKAHKKSLDDDKSRIGFWLQHFAGMQLRDITESK
                     IYSAMQKMTNRRHEENWKLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLRAA
                     EREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPLKSVVEFALATGLRRSN
                     IINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKES
                     CTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVL
                     QEMGGWESIEMVRRYAHLAPNHLTEHARQIDSILNPSVPNLSQSRNKERTNDV"
     gene            complement(10582..10719)
                     /locus_tag="OQQ19_004441"
                     /pseudo
     CDS             complement(10582..10719)
                     /locus_tag="OQQ19_004441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518805.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
BASE COUNT         2591 a         2676 c         2805 g         2800 t
ORIGIN      
        1 caccccatta taaggggtac gaataaagta acggggcagt ctattttaca gcggcatatt
       61 gcctcgttct cgcatcatgg tttgcctcaa ggcagtgacg acgcgctacg gtatattgcg
      121 gaacatgacg atgcgctggc gtttgcgtgt attaatcgcc agatgatcgc tttgcgcata
      181 atgcaacaag ttaaggccac gggaagtccg gttctggatg tggcgcataa ctttgttagc
      241 gcgtgtcaaa tcggcgatca acagggctgg ttgcatcgta aaggtgccac gccggatgac
      301 aacggtctgg tgattattcc cggttcacgt ggtgattact cctggattgt acagcctgtt
      361 gcgaacgaaa aaacgctcca ctcgctggcg catggggcag ggcgtaaatg ggggcgcacc
      421 gagtgtaaat ggcgtctggc agcgaaatac acggtgacgc aactctcgcg gactgaactt
      481 ggcagtcgga taatttgtcg cgataaacaa ctcatctttg aagaagcgcc acaagcctat
      541 aaatcggctg aaagcgtggt gcaatgtctg gtgcaggccg gtttaattat tcctgtcgcg
      601 cggctgcgtc cggtgctaac gctcaaaaac agtggaggga aaaaaggatg atcttgctac
      661 aactctcctc agcgcagggg ccggaagaat gttgtctcgc agtgaaaaag gcgctggaca
      721 ggctaattaa agaagctgcc cgacaagacg tcgcggtaac ggtgttggaa acagaaacgg
      781 gccgctactc tgacacgctg cgttcagctc tggtttctct ggatggcgat aacgcatggg
      841 cattaagcga aagctggtgt ggcactattc agtggatttg tccgagtccg tatcggcctc
      901 atcatgggcg caaaaactgg tttctgggca ttgggcgttt taccgctgat gagcaggagc
      961 aatccgatgc gatccggtat gagacgctgc gttcgtcggg gccgggcggt caacatgtca
     1021 ataaaaccga ctcggcggta cgcgccacgc atttggcatc cggtattagc gtgaaggttc
     1081 agtcagagcg tagtcagcat gctaacaagc ggctggcacg attgctgatt gcctggaagc
     1141 tggagcagca gcaacaggaa aatagcgcgg tgctgaaatc gcagcggcga atgttccatc
     1201 accagattga acgtggcaac ccgagacgga catttacagg gatggctttt atcgaaggat
     1261 aatgaaggat gaaactgccg gaaggcgatt aaacgccatc cggcagcaaa tcaaataatt
     1321 acttcgccgg aatttctttc agcagttcag tcagcagtgt ccagtaatga cctacgcttt
     1381 cgatgtgaac ttgctcatcc ggagagtgtg gaccggtgat agttggcccg atagaaacca
     1441 tgtccatttc cggatacggt tttttgaaca gaccacattc caggcccgcg tggataatct
     1501 ggatgttcgg cgtcttgttg aacaggcgct gataggtttc acgtaccaga tgcatcaccg
     1561 gagaattagc gtccggctgc cagccaggat atgcgccttt cgcttcggtt ttcgcgccag
     1621 ccagtttacc cagcgaatcc agcatgctca ccacgtagtc tttaccgctg tcgatcagtg
     1681 aacggatcag gcagtgaatt tctacgttat tgtcagtcat ggtcaccaca ccgacgttca
     1741 gggaggtttc aaccacacct ttggctacat cggagttgcg gatcacaccg ttcggggtgg
     1801 cgttcagcag acgaataaag gtatcgcgag atttcgcaat cagggcagct ttatcgttcg
     1861 ctacagagtc cagcaacaag gccagatttt tctctttctc tgccagctcg tttttcagga
     1921 tctcctgata ggtattcacc agagatttca gtgcgtcgac tttatcagct gcgacagcaa
     1981 tggtcgcaaa ggcttcacgc gggatggcgt tacgcagtgt gccgccgttg aaatcgataa
     2041 ggcgcaggtc cagttcttct gcatgacccg ccaggaagcg caccagcagt ttgttggcat
     2101 tacccaggcc aacgtggatt tcaccgccgg agtgaccgcc tttcagacct tttaaggtta
     2161 acttgaaggt ttcaaaacca gctggaaccg cttcacgatc taaatgcagg ttggaggtga
     2221 agtcgatacc ccccgcacaa cccatgtaga tttcaccttc ttcttcggag tcggtgttaa
     2281 tcagaatatc agcctgcaac cagttgctct gtaagccaaa agcaccgtcc ataccggctt
     2341 cttcggtcat ggtcagcagc acttccagcg gaccgtgaac cacgttttcg tcagccagaa
     2401 ccgccagtgc agaggccata ccaatgccgt tatccgcacc cagcgtggtg ccgcgcgctt
     2461 taacccattc gccatcaata taaggctgga taggatcttt cgtgaagtca tgcacggtgt
     2521 cgttattttt ctgcggcacc atatcgaggt gggcctgtaa gacgaccggt ttacgatttt
     2581 ccatacctgc ggtagcaggt ttacgaatca ggatattacc tacctgatcg cgttcgacat
     2641 ggaaaccttt ctcttttgcc caaccaacaa tgtattcagc gagttgctct tcatgatagg
     2701 acgggtgcgg aatagaacag attttggcaa aaatatccca cagcggctgt ggagataatt
     2761 gagacagttc agacacgtta agtctccttg tcgatcaccc gcaaaacagt attgcaggtc
     2821 acagggttag cagaaaatgt tgtcaacaca agacaggctt gcgagatatg tttgagaata
     2881 ccactttatc ccgcgtcagg gagaggcagt gcgtaaaaag acgcggactc atgtgaaata
     2941 ctggttttta gtgcgccaga tctctataat ctcgcgcaac ctattttccc ctcgaacact
     3001 ttttaagccg tagataaaca ggctgggaca cttcacatga gcgaaaaata catcgtcacc
     3061 tgggacatgt tgcagatcca tgcacgtaaa ctcgcaagcc gactgatgcc ttctgaacaa
     3121 tggaaaggca ttattgccgt aagccgtggc ggtctggtac cgggtgcgtt actggcgcgt
     3181 gaactgggta ttcgtcatgt cgataccgtt tgtatttcca gctacgatca cgacaaccag
     3241 cgagagctta aagtgctgaa acgcgcagaa ggcgatggcg aaggcttcat agttattgat
     3301 gacctggtgg ataccggtgg tactgctgtt gcgattcgtg aaatgtatcc aaaagcgcac
     3361 tttgtcacca tcttcgcaaa accggctggt cgtccgctgg ttgatgacta tgttgttgat
     3421 attccgcaag atacctggat cgaacagccg tgggatatgg gcgtcgtatt cgtcccgcca
     3481 atctccggtc gctaatcttt tcaacgcctg gcactgccgg gcgttgttct ttttaacttc
     3541 aggcaggtta caatagtttc cagtaagtat tctggaggct gcatccatga cacaggcaaa
     3601 cctgagcgaa accctgttca aaccccgctt taaacatcct gaaacctcga cgctagtccg
     3661 ccgctttaat cacggcgcac aaccgcctgt gcagtcggct cttgatggta aaaccatccc
     3721 tcactggtat cgcatgatta accgtctgat gtggatctgg cgcggtattg acccacgtga
     3781 aatcctcgac gtccaggcac gtattgtgat gagcgatgct gaacgtaccg acgatgattt
     3841 atacgatact gtgattggct accgtggtgg caactggatt tatgagtggg ccacccaggc
     3901 gatggtgtgg caacaaaaag cctgtgcgga agaagatccg caactcagtg gtcgacactg
     3961 gctgcatgcg gctacgttgt acaacattgc cgcctatcct catctgaaag gagatgacct
     4021 ggccgagcaa gcgcaggctt tatcaaaccg cgcctatgaa gaggccgccc agcgtctgcc
     4081 gggcacgatg cggcagatgg agtttaccgt acccggcggt gcgcccatca ccggcttttt
     4141 gcatatgccg aaaggcgatg gcccgttccc gacagtatta atgtgtggtg gtctggatgc
     4201 gatgcagacg gactattaca gcctgtatga acgttatttt gcgccgcgcg gcattgtgat
     4261 gctgactatt gatatgccgt cggtgggctt ttcttcaaaa tggaagctca cccaggactc
     4321 cagcctgttg catcagcacg tcttaaaggc gctgcctaac gtaccgtggg tggatcacac
     4381 tcgcgtcgcg gcctttggtt tccgtttcgg cgctaacgtt gccgtgcgtc tggcatatct
     4441 tgaatcgccg cgtctgaaag cggttgcctg tcttggtccg gtagttcata ccctgttgag
     4501 tgattttaag tgccagcaac aggtgccgga aatgtatctt gacgttctgg cgagtcgttt
     4561 ggggatgcat gatgcttccg acgaagcgtt acgcgtggag ctgaatcgct attcattaaa
     4621 agtgcaagga ttgctgggac gtcgctgccc aacgccaatg ttatcaggct actggaagaa
     4681 cgatccgttc agcccggaag aggactcacg cttaatcacc tcatcatctg ctgacggtaa
     4741 attattagag atcccattta acccggtgta tcggaatttt gacaaaggtc ttcaggaaat
     4801 caccggctgg atcgaaaaac gcttgtgtta aaaatttgct aaattttgcc aatttggtaa
     4861 aacagttgca tcacaacagg agatagcaat gacgttaccg agtggacacc cgaagagcag
     4921 attgatcaaa aaatttaccg cactaggccc gtatattcgt gaaggtaagt gcgaagataa
     4981 tcgattcttt ttcgattgtc tggctgtatg cgtcaacgtg aaaccggcac cggaagtgcg
     5041 tgaattctgg ggctggtgga tggagctgga agcgcaggaa tcccgtttta cctacagcta
     5101 ccagtttggt ctgttcgata aagcaggcga ctggaagagt gttccggtaa aagatactga
     5161 agtggttgaa cgactggagc acaccctgcg tgagtttcac gagaagctgc gtgaactgct
     5221 gacgacgctg aatctgaagc tggaaccggc ggatgatttt cgtgacgagc cggtgaagtt
     5281 aacggcgtga gtgaaatgtg ccggatgcat cacatccggc aatatctatt aaaactgata
     5341 cgtcatccca atcgcgacaa tatcatcatt attaatattc aatttgttat cgctatccag
     5401 ttggttgatt ttataatcaa caaatgctga catatttttg ttgaaataat acgtagcacc
     5461 gacgtcgata taattaacca gatcttcacc accgatgccc tcaatatctt tccctttcga
     5521 taagacataa cccagcgatg gacgcagacc aaagtcaaac tggtattgag cgaccgcttc
     5581 aaagttctgt gtcttattgg caaagccgcc agttattggc gtcattttgc gagtttcaga
     5641 atagaaagtt gccagataaa tattattggc atcgtatttc agacctgttg cccatgcttc
     5701 tgcacgcttg cctgtgccac ggctttgcag gttctgctcg ttggtgcgat ctgagttggt
     5761 ataggcccca ctaatggcga aatcgctgcc gccaaagtca tatgtcaatg acgtgccgaa
     5821 gccatcgccg ttttgctttt taacgtcgcg gttttcgttt ttcccttgat attgcagggt
     5881 taagttcagg ccatcgataa cgccgaagaa gtcggtgttc cgatacgtcg ccagaccgct
     5941 ggcgcgtttg gtcataaagt tgtcggtctg cgccgaggag tcgccaccaa attccggaaa
     6001 catatcggtc caggcttcca cgtcatacaa cgcgcccagg ttacgaccat aatcgaaaga
     6061 acccaaatct ttatatttca acccggcaaa agcgagacgc gttttttgct gtgcagtatc
     6121 actctctgct ttattaccgg caaactctgc ttcccaacga ccataaccag tcagttgatc
     6181 gttaatttgt gtttcgcctt taaaaccaaa acggatataa ctctggtcgc catctttact
     6241 gtcgttatca ctcatataat gcatggcttt aactttgcca tagacatcca gtttattacc
     6301 gtctttgtta tatatttctg cggcctgtac ggatgcagat gccacaatgc ccatcaccac
     6361 taatgccaga gtgctctttt tcattttcat tcctgatttt aattaacgcg cgaatattca
     6421 gcgggagagc cccgttgaaa acaggaaagt ttttaacctg agattgttaa agatatatta
     6481 cagattaata atattcttaa aatgtggtaa tttattaaat ctgtaataaa agcgtaaaca
     6541 actgccgcta ggcttgctga tcccgcgcaa caaaacgcca tgctttgctc gcagatggtt
     6601 ggcaaccgac gacagtcctg ctaaaacgtt cgtttgatat catttttcct aaaattgaat
     6661 ggcagagaat catgagtgac agccagacgc tggtggtaaa actcggcacc agtgtgctaa
     6721 caggcggatc gcgccgtctg aaccgtgccc atatcgttga acttgttcgc cagtgcgcgc
     6781 agttacatgc cgccgggcat cggattgtta ttgtgacgtc gggcgcgatc gccgccggac
     6841 gtgagcactt gggttacccg gaactgccag cgactatcgc ctcgaaacaa ctgctggcag
     6901 cggtagggca gagtcgactg attcaactgt gggaacagct gttttcgatt tatggcattc
     6961 acgtcgggca aatgctgctg acccgtgctg atatggaaga ccgtgaacgc ttcctgaacg
     7021 cccgcgacac cctgcgtgcg ttgctcgata acaatatcgt tccggtaatc aatgagaacg
     7081 atgctgtcgc tacggcagag attaaagtcg gcgataacga taacctttct gcgctggcgg
     7141 cgattctggc gggtgccgat aaactgttgc tgctgaccga tcaaaaaggt ttgtataccg
     7201 ctgacccgcg cagcaatccg caggcagaac tgattaaaga tgtttacggc attgatgacg
     7261 cactgcgcgc gattgccggt gacagcgttt caggcctcgg aactggcggc atgagtacca
     7321 aattgcaggc cgctgacgtg gcttgccgtg cgggtatcga caccattatt gccgcgggca
     7381 gcaagccggg cgttattggt gatgtgatgg aaggcatttc cgtcggtacg ctgttccatg
     7441 cccaggcgac tccgcttgaa aaccgtaaac gctggatttt cggtgcgccg ccggcgggtg
     7501 aaatcacggt agatgaaggg gcaactgccg ccattctgga acgcggcagc tccctgttgc
     7561 cgaaaggcat taaaagcgtg actggcaatt tctcgcgtgg tgaagtcatc cgcatttgca
     7621 acctcgaagg tcgcgatatc gcccacggtg tcagtcgtta caacagcgat gcattacgcc
     7681 gtattgccgg acaccactcg caagaaattg atgcaatact gggatatgaa tacggcccgg
     7741 ttgccgttca ccgtgatgac atgattaccc gttaaggagc tggccgatgc tggaacaaat
     7801 gggcattgcc gcgaagcaag cctcgtataa attagcgcaa ctctccagcc gcgaaaaaaa
     7861 tcgcgtgctg gaaaaaatcg ccgatgaact ggaagcacaa agcgaaatca ttctcaacgc
     7921 taacgcccag gatgttgctg acgcgcgagc caatggcctt agcgaagcga tgcttgaccg
     7981 tctggcactg acgcccgcac ggctgaaagg cattgccgac gatgtacgtc aggtgtgcaa
     8041 cctcgccgat ccggtggggc aggtaatcga tggcggcgta ctggacagcg gcctgcgtct
     8101 tgagcgtcgt cgcgtaccgc tgggagttat tggcgtgatt tatgaagcgc gcccgaacgt
     8161 gacggttgat gtcgcttcgc tgtgcctgaa aaccggtaat gcggtgatcc tgcgcggtgg
     8221 caaagaaacg tgtcgcacta acgctgcaac ggtggcggtg attcaggacg ccctgaaatc
     8281 ctgcggctta ccggcgggtg ccgtgcaggc gattgataat cctgaccgtg cgctggtcag
     8341 tgaaatgctg cgtatggata aatacatcga catgctgatc ccgcgtggtg gcgctggttt
     8401 gcataaactg tgccgtgaac agtcgacaat cccggtgatc acaggtggta taggcgtatg
     8461 ccatatttac gttgatgaaa gtgtagagat cgctgaagca ttaaaagtga tcgtcaacgc
     8521 gaaaactcag cgtccgagca catgtaatac ggttgaaacg ttgctggtga ataaaaacat
     8581 cgccgatagc ttcctgcccg cattaagcaa acaaatggcg gaaagcggcg tgacattaca
     8641 cgcagatgca gctgcactgg cgcagttgca ggcaggccct gcgaaggtgg ttgctgttaa
     8701 agccgaagag tatgacgatg agtttctgtc attagatttg aacgtcaaaa tcgtcagcga
     8761 tcttgacgat gccatcgccc atattcgtga acacggcaca caacactccg atgcgatcct
     8821 gacctgcgat atgcgcaacg cccagcgttt tgttaacgaa gtggattcgt ccgctgttta
     8881 cgttaacgcc tctacgcgtt ttaccgacgg cggccagttt ggtctgggtg cggaagtggc
     8941 ggtaagcaca caaaaactcc acgcgcgtgg cccaatgggg ctggaagcac tgaccactta
     9001 caagtggatc ggcattggtg attacaccat tcgtgcgtaa ataaaaccgg gtgatgcaaa
     9061 agtagccatt tgattcacaa ggccattgac gcatcgcccg gttagtttta accttgtcca
     9121 ccgtgattca cgttcgtgaa catgtccttt cagggccgat atagctcagt tggtagagca
     9181 gcgcattcgt aatgcgaagg tcgtaggttc gactcctatt atcggcacca tttaaatcaa
     9241 taagttacac atcattagta cgttccttat ttcttgactg ggacaaattt gggaccgatg
     9301 ggttcagaat cgagtctatt tgccgtgcgt gttcggtaag gtgattaggt gcgaggtgag
     9361 catatcgacg aaccatttcg atagactccc agcctcccat ttcctgtaac actgataacg
     9421 ggactccggc ttgaaccagc caacttgccc aggtgtgtct caagtcgtga aatctgaaat
     9481 catcaatacc tgctcgtctc agcgccgctt tccaggctgt gtttgcgtca taccgcatct
     9541 tcctgactgt tggcgctttc gttccgtctg gtttggtaca gctttcctta tacacaaata
     9601 cccaacggtg atgattcccg atttgttttt tcaatacgcg acatgcagta tcattcagcg
     9661 caacgccaat tgcgcggttt gatttactct cttccgggtt tatccatgcc acccggcgct
     9721 gcatgtctat ttgttgccat tcaaggttga tgatgttcga gcgtcttaag cctgttgcaa
     9781 gtgcaaattc aacaacagac tttaatggct ccggacattc atcaatcagc ctttgtgctt
     9841 catgaggctc cagccagcgg atccgtttat tctttggttg aggcacttta ataattggtg
     9901 ccttatccag cattttccat tcacgctctg cggctcttag cagggccttt ataaatgaaa
     9961 gatgcgtagc cttcgttgca acggacgctg gttttggcgt gtattctgga acaggtttcc
    10021 ctttttttct gcatgcttct gccctgagtt tccagttttc ctcatgacgc cggttcgtca
    10081 ttttctgcat tgctgaataa atttttgatt cagtaatgtc tcttagttgc attcctgcga
    10141 aatgttgaag ccagaatccg atccggcttt tgtcatcgtc cagtgatttt ttatgtgctt
    10201 tctcttcaag ccacctgaca cacgcttcct cgaacgttat atcaggaatt tcaccaagtt
    10261 tgctgacccg ccatgcttca gcctttagct tgtcatggag ttctgtcgcc tgccttttgt
    10321 cctttgttcc aagagactgt ttaaatcttt taccgttcgg caatgtgaaa ctggcgtacc
    10381 atatttcacc tctgcggaag agtgacattt tctttcctct gttatgccat cacccgcgct
    10441 cacctggaca gtatgcagcg gagactgaag cgccgcaatg caggcttgtc gtgttgtgag
    10501 gtaaggagat ttattcttag tgggatcttt gcgtgttgcc tgcagacgcc ctgtgcgtat
    10561 ccagttaatg gcagtcggtc tggatatctt gagaaaatga caggcctcat ctagcgtgag
    10621 gctgtatggt tccattattt cacctcttgc tgtgatattg ttgaaaaatg aatgccagct
    10681 cgttgttgcc agacgatcca accgagagtc atatcccatg ccatgtattc gttatcgccg
    10741 ttttttgctc tccgactatc tactaagcca ccgaaatgtt tttccataaa taattcatag
    10801 gattcgcgtt catctggctc tacttccaga gatatgaggt agcctgagtt taacggacac
    10861 tccttcctga aa
//
